BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 001050
         (1173 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|255548744|ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
 gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
          Length = 1203

 Score = 1915 bits (4960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 922/1179 (78%), Positives = 1037/1179 (87%), Gaps = 15/1179 (1%)

Query: 1    MDSD---DNGFTDP-TSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQ 56
             DSD   D  F D  TSL D+GE  LK FC KAA  FFNEYGL+SHQINSYN+FI NG+Q
Sbjct: 34   FDSDSGSDCDFMDSSTSLTDIGEAKLKDFCNKAATLFFNEYGLISHQINSYNDFINNGIQ 93

Query: 57   KAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARL 116
            KAFDSFGE +VEPGYDPSKKGE EWRYAS++FG+V L+KP+F++G   DEH M PRHARL
Sbjct: 94   KAFDSFGELVVEPGYDPSKKGENEWRYASVKFGKVALEKPTFWSG--ADEHKMLPRHARL 151

Query: 117  QNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSD 176
            QNMTYSS+MKV V  +VYT+K V SDKFKTG++QY+ KEVL+ +  NI IG +PVMVKSD
Sbjct: 152  QNMTYSSKMKVNVSVEVYTRKVVRSDKFKTGKDQYVDKEVLNTDNRNITIGSLPVMVKSD 211

Query: 177  LCWMKGVEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNR 236
            LCWMK  EKGDCDFDHGGYF+IKGAEKVF+AQEQICLKRLW+SN  GWTV+YKSE KRNR
Sbjct: 212  LCWMKTAEKGDCDFDHGGYFLIKGAEKVFIAQEQICLKRLWISNIQGWTVSYKSEIKRNR 271

Query: 237  LIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
            LIVRLV +S  ED+K  +K L+VYFLSTEIP+WILFFALGV+SDKE+++LI +   D  I
Sbjct: 272  LIVRLVGLSALEDVKAEKKCLTVYFLSTEIPLWILFFALGVTSDKEVIDLIGYGSNDARI 331

Query: 297  LNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQ 356
            +NI FASIHDAD K + FR+G+ AL+YV + I+GT FPPGE+ E+    YLFP+LH  +Q
Sbjct: 332  VNIFFASIHDADEKTEGFRRGKEALEYVVRQIRGTRFPPGEN-EDFFLLYLFPTLHSLRQ 390

Query: 357  KARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQ 416
            KARFLGYMVKCLLQAY+G+RKC+N D FRNKR ELA ELLERELKVHIAHAR+RMAKALQ
Sbjct: 391  KARFLGYMVKCLLQAYNGQRKCNNWDSFRNKRFELAKELLERELKVHIAHARRRMAKALQ 450

Query: 417  RDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTL 476
            +DLYGDR VRPIE+YLDASI+TNGLSRAFSTGAWSHP+KR ERISG+VANLGRANPLQT+
Sbjct: 451  KDLYGDRDVRPIEHYLDASIVTNGLSRAFSTGAWSHPYKRMERISGVVANLGRANPLQTM 510

Query: 477  VDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEP 536
            VDLR+TR  VQYTGKVGDAR+PHPSHWG++CFLSTPDGENCGLVKNL  TGLVS +ILEP
Sbjct: 511  VDLRKTRYHVQYTGKVGDARFPHPSHWGRVCFLSTPDGENCGLVKNLATTGLVSVNILEP 570

Query: 537  IFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQV 596
            + ++L   GMEK+ +D+   L  K KVF++G+W+GVC+DS  FV+ELRR RRRK+LP QV
Sbjct: 571  LIDKLIARGMEKVPEDSHSDLDEKDKVFLNGEWVGVCEDSRLFVAELRRLRRRKKLPQQV 630

Query: 597  EIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEE 656
            EIKRDE Q EVRIF DAGRILRPLLVV+N+ KI++ +G N TFQ+LLD GIIE VGTEEE
Sbjct: 631  EIKRDEQQQEVRIFSDAGRILRPLLVVQNLHKIEAFKGGNCTFQSLLDKGIIEFVGTEEE 690

Query: 657  EDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKH 716
            EDC TAWGIK+LL  ++ K+ +K+THCELDMSFLLGLSCGIIPFANHDHARRVLYQ+QKH
Sbjct: 691  EDCSTAWGIKFLLSGVDGKQSLKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKH 750

Query: 717  SSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPG--YGHNHILPRPELYNG 774
            S QAIGFPTTNP+IRVDTLSHQL+YPQRPLFRT+ SDCLGKPG   GHN I+P+PELYNG
Sbjct: 751  SQQAIGFPTTNPNIRVDTLSHQLYYPQRPLFRTVTSDCLGKPGDTRGHNGIVPKPELYNG 810

Query: 775  QNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVN 834
            QNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKA+VDNKE+  KRR  DD VN
Sbjct: 811  QNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKADVDNKELLDKRRKYDDNVN 870

Query: 835  FGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKVVL 894
            FGKI SKIGRVDSLDDDGFPFIGANLQSGDIVIG+ A+SG DHSIKLKHTERGMVQKVVL
Sbjct: 871  FGKIPSKIGRVDSLDDDGFPFIGANLQSGDIVIGRCAESGPDHSIKLKHTERGMVQKVVL 930

Query: 895  SSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINP 954
            SSND+GKNF+VVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT QGIVPDIVINP
Sbjct: 931  SSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINP 990

Query: 955  HAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWG 1014
            H+FPSRQTPGQLLEAALGKGIA      C G  +YATPF+T SV+AIT QLHRAGFS+WG
Sbjct: 991  HSFPSRQTPGQLLEAALGKGIA------CGGSMKYATPFSTLSVEAITNQLHRAGFSRWG 1044

Query: 1015 TERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGI 1074
             ER+Y+GRTGEMVRSLIF+GPTFYQRLIHM+EDKVKFRNTGPVHPLTRQPVADRKRFGGI
Sbjct: 1045 NERVYNGRTGEMVRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGI 1104

Query: 1075 KFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYC 1134
            KFGEMERDCLIAHGA+ANLHERLFTLSDS QMHIC+KCKNVANVIQR V GGRK+RGPYC
Sbjct: 1105 KFGEMERDCLIAHGASANLHERLFTLSDSSQMHICQKCKNVANVIQRAVPGGRKIRGPYC 1164

Query: 1135 RICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTEFC 1173
            R+C+S D+IVK NVPYGAKLLCQELFSMGI+LKF+T  C
Sbjct: 1165 RVCESVDEIVKVNVPYGAKLLCQELFSMGISLKFETRLC 1203


>gi|224141967|ref|XP_002324332.1| predicted protein [Populus trichocarpa]
 gi|222865766|gb|EEF02897.1| predicted protein [Populus trichocarpa]
          Length = 1160

 Score = 1914 bits (4958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 905/1160 (78%), Positives = 1019/1160 (87%), Gaps = 16/1160 (1%)

Query: 12   TSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGY 71
            T+L +LG+E L++FC+KAA  FF+EYGL+SHQINSYN FI +GLQ+ FDSFGE  VEPGY
Sbjct: 13   TNLNELGKETLQSFCKKAASLFFDEYGLISHQINSYNSFINSGLQRVFDSFGEVAVEPGY 72

Query: 72   DPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGD-EHDMFPRHARLQNMTYSSRMKVKVQ 130
            D SK+ +GEWR AS+RFG+VTLD+PSF+ G   D EH+MFPRHARLQNMTYS+RMK+ V 
Sbjct: 73   DSSKQKDGEWRRASVRFGKVTLDRPSFWGGTSSDAEHNMFPRHARLQNMTYSARMKIHVN 132

Query: 131  FQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCDF 190
             QVYTQ    SDKFKTG ++ +QK V+  E   IIIGRIPVMVKSDLCW+  VEKGDCDF
Sbjct: 133  VQVYTQTVGRSDKFKTGIDKVVQKNVVHTENREIIIGRIPVMVKSDLCWLTTVEKGDCDF 192

Query: 191  DHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDI 250
            DHGGYF+IKGAEKVF+AQEQIC+KRLW+SNS GWTV+YKSE KRNRLIVRLV++SK E I
Sbjct: 193  DHGGYFLIKGAEKVFIAQEQICMKRLWISNSQGWTVSYKSEVKRNRLIVRLVELSKLEYI 252

Query: 251  KGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNK 310
            KG +K L VYFLSTEIP+WILFFALGV SDKE+++LID+   D SI+NI FASIHDAD K
Sbjct: 253  KGEKKGLCVYFLSTEIPLWILFFALGVRSDKEVIDLIDYASNDASIVNIFFASIHDADEK 312

Query: 311  CDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQ 370
            C+ FR+   AL YVDKL+K T FPP ES E+ ++ YLFP L+  + KARFLGYMVKCLL+
Sbjct: 313  CEHFRREDRALDYVDKLLKKTRFPPKESIEDAISAYLFPRLNSRRHKARFLGYMVKCLLE 372

Query: 371  AYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEY 430
            AY+G RKCDNRD FRNKR ELA ELLERELKVH++HA +RM KALQRDLYGDR V PIE+
Sbjct: 373  AYTGHRKCDNRDSFRNKRFELASELLERELKVHVSHALRRMTKALQRDLYGDRDVHPIEH 432

Query: 431  YLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTG 490
            YLDASI+TNGL+RAFSTGAW HPFK  ER+SG+V NLGRANPLQT++DLR+TRQQV YTG
Sbjct: 433  YLDASIVTNGLTRAFSTGAWCHPFKWMERVSGVVGNLGRANPLQTMIDLRKTRQQVLYTG 492

Query: 491  KVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFNSGMEKLA 550
            KVGDARYPHPSHWG++CFLSTPDGENCGLVKNL VTG+VST+I E + ++LF+SGMEKL 
Sbjct: 493  KVGDARYPHPSHWGRVCFLSTPDGENCGLVKNLAVTGVVSTNISESLVDKLFDSGMEKLV 552

Query: 551  DDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIF 610
            DD    L GK KVF++G+W+GVC+DS  FV ELR  RRR+ELP QVEIKRDE Q EVRIF
Sbjct: 553  DDTYTKLDGKHKVFLNGEWVGVCEDSCLFVGELRSMRRRRELPYQVEIKRDEQQREVRIF 612

Query: 611  MDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLK 670
             DAGRILRPLLVVEN+ KIK+ +G NY F +LLD GIIE +GTEEEEDCCTAWGIK+LL 
Sbjct: 613  SDAGRILRPLLVVENLDKIKAFKGGNYIFTSLLDKGIIEFIGTEEEEDCCTAWGIKFLLA 672

Query: 671  DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSI 730
            DIE K+P+K++HCELDMSFLLGLSCGIIPFANHDHARRVLYQ+QKHS QAIGF TTNP+I
Sbjct: 673  DIEGKQPMKYSHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFSTTNPNI 732

Query: 731  RVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQE 790
            RVDTLSHQL YPQRPLFRTMISDCL         +LP+PEL+NGQNAIVAVNVHLGYNQE
Sbjct: 733  RVDTLSHQLHYPQRPLFRTMISDCL---------VLPKPELFNGQNAIVAVNVHLGYNQE 783

Query: 791  DSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDD 850
            DSLVMNRASLERGMFRSEHIRSYKAEVDNKE+  KRR S+D + FGKIQSKIGRVDSLDD
Sbjct: 784  DSLVMNRASLERGMFRSEHIRSYKAEVDNKELTDKRRKSEDSITFGKIQSKIGRVDSLDD 843

Query: 851  DGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQ 910
            DGFPFIGAN+QSGDIVIGK A+SGADHS+KLKHTERGMVQKVVLSSND+GKNF+VVSLRQ
Sbjct: 844  DGFPFIGANMQSGDIVIGKCAESGADHSVKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQ 903

Query: 911  VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA 970
            VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQG+VPDIVINPHAFPSRQTPGQLLEAA
Sbjct: 904  VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGVVPDIVINPHAFPSRQTPGQLLEAA 963

Query: 971  LGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSL 1030
            LGKGIA      C G KRYATPF+T SVD I +QLHRA FS+WG ER+Y+GRTGEMVRSL
Sbjct: 964  LGKGIA------CGGSKRYATPFSTLSVDDIIDQLHRAKFSRWGNERVYNGRTGEMVRSL 1017

Query: 1031 IFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAA 1090
            IF+GPTFYQRL+HM+EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA+
Sbjct: 1018 IFMGPTFYQRLVHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAS 1077

Query: 1091 ANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPY 1150
            ANLHERLFTLSDS +MHIC+KCKNVANVIQR V GGRK+RGPYCR+C+S DD+VK +VPY
Sbjct: 1078 ANLHERLFTLSDSSEMHICQKCKNVANVIQRGVPGGRKIRGPYCRVCESVDDLVKVSVPY 1137

Query: 1151 GAKLLCQELFSMGITLKFDT 1170
            GAKLLCQELFSMGI+LKFDT
Sbjct: 1138 GAKLLCQELFSMGISLKFDT 1157


>gi|225430474|ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
            vinifera]
          Length = 1198

 Score = 1895 bits (4909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 899/1182 (76%), Positives = 1033/1182 (87%), Gaps = 18/1182 (1%)

Query: 1    MDSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFD 60
            M+ DD+       + DL +E+LKTFC+K AVSFFNEYGL+ HQINS+N+FIKNG+Q+ FD
Sbjct: 26   MEIDDD-LMGSIEIDDLNKEYLKTFCKKVAVSFFNEYGLIQHQINSFNDFIKNGIQRVFD 84

Query: 61   SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAG--NGGDEHDMFPRHARLQN 118
            SFGE  VEPGYDPSK+GEG+WRYAS+RFG+VTL++P  +AG  +G +  +  PRHARLQN
Sbjct: 85   SFGEIPVEPGYDPSKRGEGDWRYASVRFGKVTLERPRVWAGESDGKESLNFLPRHARLQN 144

Query: 119  MTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE-QYIQKEVLSDETTNIIIGRIPVMVKSDL 177
            MTYSSRMK +V FQVYTQK V SDK+KTG++ +Y++K+V+ ++  +I+IGRIPVMVKS+L
Sbjct: 145  MTYSSRMKAQVHFQVYTQKLVRSDKYKTGKDNKYVEKKVIFEDNRDILIGRIPVMVKSEL 204

Query: 178  CWMKGVEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRL 237
            CWM GVE+GDC++DHGGYF+IKGAEK F+AQEQICLKRLWVS++  W VAY+   KR R+
Sbjct: 205  CWMNGVERGDCEYDHGGYFLIKGAEKTFIAQEQICLKRLWVSSNPTWMVAYRPIWKRKRV 264

Query: 238  IVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSIL 297
             V+L +  K E+ +GGEKVL+VYF STEIPIWILFFALG SSDKE+V+LIDF  +D  I 
Sbjct: 265  YVKL-EPPKDENNRGGEKVLTVYFSSTEIPIWILFFALGASSDKEVVDLIDFNIDDAGIS 323

Query: 298  NILFASIHDADNKCDE----FRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHG 353
            NIL ASIH+AD + ++    FR+  NA+ +VDKL+K   FPPGES +EC++ YLFP+  G
Sbjct: 324  NILVASIHEADREAEKKGMYFRRQGNAISFVDKLVKSCKFPPGESIQECISKYLFPNFSG 383

Query: 354  TKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAK 413
             KQKARFLGYMVKCLLQAY+GRRKCDNRDDFRNKRLELAGELLEREL+VHI HA +RM K
Sbjct: 384  VKQKARFLGYMVKCLLQAYTGRRKCDNRDDFRNKRLELAGELLERELRVHIRHAERRMVK 443

Query: 414  ALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPL 473
            A+QR+LYGDR +RPIE YLDASI+TNGLSRAFSTG WSHPFKR ERISG+VA L R NPL
Sbjct: 444  AMQRELYGDRDLRPIENYLDASIITNGLSRAFSTGQWSHPFKRMERISGVVATLRRTNPL 503

Query: 474  QTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI 533
            Q   D+R+TRQQVQYTGKVGDARYPHPSHWGK+CFLSTPDGENCGLVKNL +TGLVST +
Sbjct: 504  QMTADMRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEV 563

Query: 534  LEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELP 593
            L+P+ ++LF+ GMEKL DD S  L GK KVF+DGDW+GVC+D +SFV ELR KRR KELP
Sbjct: 564  LDPLVDKLFDCGMEKLVDDTSTKLSGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELP 623

Query: 594  TQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGT 653
             QVEIKRDE Q EVRIF DAGRILRPLLVVEN+ K+K+ +G ++TFQ+LLD GI+EL+G 
Sbjct: 624  QQVEIKRDEQQGEVRIFSDAGRILRPLLVVENLKKVKTFKGDDFTFQSLLDKGIVELIGA 683

Query: 654  EEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQS 713
            EEEEDC TAWGIKYLLK   D  P+K+THCELDMSFLLGLSCGIIP+ANHDHARRVLYQS
Sbjct: 684  EEEEDCSTAWGIKYLLKG-HDDPPVKYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQS 742

Query: 714  QKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGY--GHNHILPRPEL 771
            +KHS QAIGF TTNP+IRVDTLSHQL+YPQRPLFRTMISDCLGKPGY  GH  I+PRPE 
Sbjct: 743  EKHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRTMISDCLGKPGYSEGHKGIVPRPEY 802

Query: 772  YNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDD 831
            +NGQ AIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYK+EVDN E   K+R S+D
Sbjct: 803  FNGQIAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKSEVDNNESLDKKRKSED 862

Query: 832  MVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQK 891
             V+FGK+QSKIGRVDSLDDDGFPFIGANLQ+GDIVIG+ A+SG DHSIKLKHTERGMVQK
Sbjct: 863  SVHFGKMQSKIGRVDSLDDDGFPFIGANLQNGDIVIGRCAESGVDHSIKLKHTERGMVQK 922

Query: 892  VVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIV 951
            VV+S+NDDGKNF+VVSLRQVR+PCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIV
Sbjct: 923  VVVSANDDGKNFAVVSLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIV 982

Query: 952  INPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFS 1011
            INPHAFPSRQTPGQLLEAALGKGIA      C GL R+ATPF+T SVDAI +QLHRAGFS
Sbjct: 983  INPHAFPSRQTPGQLLEAALGKGIA------CGGLLRHATPFSTLSVDAIADQLHRAGFS 1036

Query: 1012 KWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRF 1071
            +WG ER+Y+GRTGEM+RSLIF+GPTFYQRLIHM+EDKVKFRNTGPVHPLTRQPV+DRKRF
Sbjct: 1037 RWGHERVYNGRTGEMLRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRF 1096

Query: 1072 GGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRG 1131
            GGIKFGEMERDCLIAHGAAANLHERLFTLSDS  MHICR+CKN++NVIQR V GGRKVRG
Sbjct: 1097 GGIKFGEMERDCLIAHGAAANLHERLFTLSDSAYMHICRRCKNISNVIQRSVAGGRKVRG 1156

Query: 1132 PYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTEFC 1173
            PYCR C+S ++IVK NVPYGAKLLCQELFSMGI+LKF+T+ C
Sbjct: 1157 PYCRYCESSEEIVKVNVPYGAKLLCQELFSMGISLKFETQLC 1198


>gi|449455519|ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
            sativus]
          Length = 1197

 Score = 1893 bits (4903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 887/1173 (75%), Positives = 1025/1173 (87%), Gaps = 16/1173 (1%)

Query: 8    FTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIV 67
            +++P ++ DLGE FLK FC+K++++FFN+YGL+SHQINSYN+FIKNG+QKAFD FG+ +V
Sbjct: 34   YSEPVNIHDLGEAFLKDFCKKSSMAFFNQYGLISHQINSYNDFIKNGIQKAFDFFGDILV 93

Query: 68   EPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNG-GDEHDMFPRHARLQNMTYSSRMK 126
            +PGYDPSKKG+GEWRYA+++FG+VTLDKP F+ G   G E++M PRHARLQNMTYSSRMK
Sbjct: 94   QPGYDPSKKGDGEWRYATVKFGKVTLDKPKFWGGAASGKEYNMLPRHARLQNMTYSSRMK 153

Query: 127  VKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTN--IIIGRIPVMVKSDLCWMKGVE 184
            + +  ++YTQK V+SDKFKTG++QY+ KE +   + N  + IGR+PVMV SDLCWMK  +
Sbjct: 154  INISLEIYTQKLVSSDKFKTGKDQYVDKEPVEGASDNRDVFIGRLPVMVNSDLCWMKDGQ 213

Query: 185  KGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDM 244
            K DC+FD GGYF+IKGAEK+F+AQEQICL+RLW+SN  GWTVAY+SE KRNRLI+RLV+ 
Sbjct: 214  KRDCEFDRGGYFLIKGAEKIFIAQEQICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVEN 273

Query: 245  SKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASI 304
            SK ED+K  EKVL+VYFLSTE+P+WILFFALGVSSDKEIV+LID+  +D ++LNILFAS+
Sbjct: 274  SKSEDLKSKEKVLNVYFLSTEVPVWILFFALGVSSDKEIVDLIDYGRDDPTVLNILFASV 333

Query: 305  HDADN--KCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLG 362
             + DN  K  +FR+G+ AL ++D  I+ T+FPP +  E+C+N YLF SL G+KQK  FLG
Sbjct: 334  REVDNDDKWKDFRRGKRALTFLDNEIRKTSFPPADKIEDCLNLYLFASLKGSKQKCHFLG 393

Query: 363  YMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGD 422
            YMVKCLLQAY+GRRKCDNRDDFRNKR ELA ELLERELKVHIAHAR+RM KALQRDLYGD
Sbjct: 394  YMVKCLLQAYTGRRKCDNRDDFRNKRFELAAELLERELKVHIAHARRRMEKALQRDLYGD 453

Query: 423  RTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
            R V PIE+YLDASI+TNGLSRAFSTGAW+H FKR ERISG+VA LGRANPLQT+ +LRRT
Sbjct: 454  RQVHPIEHYLDASIITNGLSRAFSTGAWAHAFKRMERISGVVATLGRANPLQTMAELRRT 513

Query: 483  RQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLF 542
            RQQV YTGKVGDARYPHPSHWG++CFLSTPDGENCGL+KNL  TGLVS +  + I   LF
Sbjct: 514  RQQVAYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLIKNLSGTGLVSLNTKKSITPTLF 573

Query: 543  NSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
              GME L D+ S S  GK+++F+DG+W+GVC+DSLSFV+ +RRKRRR     QVE+KRDE
Sbjct: 574  RCGMENLVDNTSTSFCGKYRIFLDGEWVGVCEDSLSFVTNVRRKRRRNPFLHQVEVKRDE 633

Query: 603  LQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTA 662
               EVRIF DAGRILRPLLVVEN+ +I   +G+NYTFQ+LLD GIIEL+GTEEEEDC  A
Sbjct: 634  QLKEVRIFSDAGRILRPLLVVENLNRIDKSKGENYTFQSLLDKGIIELIGTEEEEDCRVA 693

Query: 663  WGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIG 722
            W IK+L+   ED+   K++HCELDMSFLLGLSCG++PFANHDHARR L+QSQKHS+QAIG
Sbjct: 694  WSIKHLM---EDEGTTKYSHCELDMSFLLGLSCGLVPFANHDHARRALFQSQKHSNQAIG 750

Query: 723  FPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGY--GHNHILPRPELYNGQNAIVA 780
            F  TN + RVDTLSHQL YPQRPLFRTM +DCLG PGY   H  ILP+PE YNGQNAIVA
Sbjct: 751  FSPTNSNFRVDTLSHQLHYPQRPLFRTMTADCLGTPGYLSSHAGILPKPEFYNGQNAIVA 810

Query: 781  VNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQS 840
            VNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKE   KRR SDD +NFGK QS
Sbjct: 811  VNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKESSEKRRKSDDAINFGKTQS 870

Query: 841  KIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDG 900
            KIGRVDSLDDDGFP+IGANLQSGDIVIG+ A+SGADHSIKLKHTE+GMVQKVVLSSNDDG
Sbjct: 871  KIGRVDSLDDDGFPYIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDG 930

Query: 901  KNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSR 960
            KN++VVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSR
Sbjct: 931  KNYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSR 990

Query: 961  QTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYD 1020
            QTPGQLLEAALGKGIAA       G  +YATPF+TPSVDAIT+QLHRAGFS+WG+ER+Y+
Sbjct: 991  QTPGQLLEAALGKGIAA------GGSLKYATPFSTPSVDAITDQLHRAGFSRWGSERVYN 1044

Query: 1021 GRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEME 1080
            GRTGEM+RSLIF+GPTFYQRLIHM+EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEME
Sbjct: 1045 GRTGEMMRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEME 1104

Query: 1081 RDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSG 1140
            RDCLIAHGA+ANLHERLFTLSDS QMH+C+KCKNVA+VIQR V GGRK+RGPYCR+C+S 
Sbjct: 1105 RDCLIAHGASANLHERLFTLSDSSQMHVCQKCKNVASVIQRSVAGGRKMRGPYCRVCESF 1164

Query: 1141 DDIVKANVPYGAKLLCQELFSMGITLKFDTEFC 1173
            DDIV+ NVPYGAKLLCQELFSMGI LKF+T+ C
Sbjct: 1165 DDIVRVNVPYGAKLLCQELFSMGINLKFETQLC 1197


>gi|296082132|emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score = 1871 bits (4847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 890/1180 (75%), Positives = 1023/1180 (86%), Gaps = 28/1180 (2%)

Query: 1    MDSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFD 60
            M+ DD+       + DL +E+LKTFC+K AVSFFNEYGL+ HQINS+N+FIKNG+Q+ FD
Sbjct: 62   MEIDDD-LMGSIEIDDLNKEYLKTFCKKVAVSFFNEYGLIQHQINSFNDFIKNGIQRVFD 120

Query: 61   SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAG--NGGDEHDMFPRHARLQN 118
            SFGE  VEPGYDPSK+GEG+WRYAS+RFG+VTL++P  +AG  +G +  +  PRHARLQN
Sbjct: 121  SFGEIPVEPGYDPSKRGEGDWRYASVRFGKVTLERPRVWAGESDGKESLNFLPRHARLQN 180

Query: 119  MTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE-QYIQKEVLSDETTNIIIGRIPVMVKSDL 177
            MTYSSRMK +V FQVYTQK V SDK+KTG++ +Y++K+V+ ++  +I+IGRIPVMVKS+L
Sbjct: 181  MTYSSRMKAQVHFQVYTQKLVRSDKYKTGKDNKYVEKKVIFEDNRDILIGRIPVMVKSEL 240

Query: 178  CWMKGVEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRL 237
            CWM GVE+GDC++DHGGYF+IKGAEK F+AQEQICLKRLWVS++  W VAY+   KR R+
Sbjct: 241  CWMNGVERGDCEYDHGGYFLIKGAEKTFIAQEQICLKRLWVSSNPTWMVAYRPIWKRKRV 300

Query: 238  IVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSIL 297
             V+L +  K E+ +GGEKVL+VYF STEIPIWILFFALG SSDKE+V+LIDF  +D  I 
Sbjct: 301  YVKL-EPPKDENNRGGEKVLTVYFSSTEIPIWILFFALGASSDKEVVDLIDFNIDDAGIS 359

Query: 298  NILFASIHDADNKCDE----FRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHG 353
            NIL ASIH+AD + ++    FR+  NA+ +VDKL+K   FPPGES +EC++ YLFP+  G
Sbjct: 360  NILVASIHEADREAEKKGMYFRRQGNAISFVDKLVKSCKFPPGESIQECISKYLFPNFSG 419

Query: 354  TKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAK 413
             KQKARFLGYMVKCLLQAY+GRRKCDNRDDFRNKRLELAGELLEREL+VHI HA +RM K
Sbjct: 420  VKQKARFLGYMVKCLLQAYTGRRKCDNRDDFRNKRLELAGELLERELRVHIRHAERRMVK 479

Query: 414  ALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPL 473
            A+QR+LYGDR +RPIE YLDASI+TNGLSRAFSTG WSHPFKR ERISG+VA L R NPL
Sbjct: 480  AMQRELYGDRDLRPIENYLDASIITNGLSRAFSTGQWSHPFKRMERISGVVATLRRTNPL 539

Query: 474  QTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI 533
            Q   D+R+TRQQVQYTGKVGDARYPHPSHWGK+CFLSTPDGENCGLVKNL +TGLVST +
Sbjct: 540  QMTADMRKTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAITGLVSTEV 599

Query: 534  LEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELP 593
            L+P+ ++LF+ GMEKL DD S  L GK KVF+DGDW+GVC+D +SFV ELR KRR KELP
Sbjct: 600  LDPLVDKLFDCGMEKLVDDTSTKLSGKNKVFLDGDWVGVCEDPISFVVELRTKRRHKELP 659

Query: 594  TQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGT 653
             QVEIKRDE Q EVRIF DAGRILRPLLVVEN+ K+K+ +G ++TFQ+LLD GI+EL+G 
Sbjct: 660  QQVEIKRDEQQGEVRIFSDAGRILRPLLVVENLKKVKTFKGDDFTFQSLLDKGIVELIGA 719

Query: 654  EEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQS 713
            EEEEDC TAWGIKYLLK   D  P+K+THCELDMSFLLGLSCGIIP+ANHDHARRVLYQS
Sbjct: 720  EEEEDCSTAWGIKYLLKG-HDDPPVKYTHCELDMSFLLGLSCGIIPYANHDHARRVLYQS 778

Query: 714  QKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYN 773
            +KHS QAIGF TTNP+IRVDTLSHQL+YPQRPLFRTMISD            LPRPE +N
Sbjct: 779  EKHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPLFRTMISD------------LPRPEYFN 826

Query: 774  GQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMV 833
            GQ AIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYK+EVDN E   K+R S+D V
Sbjct: 827  GQIAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKSEVDNNESLDKKRKSEDSV 886

Query: 834  NFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKVV 893
            +FGK+QSKIGRVDSLDDDGFPFIGANLQ+GDIVIG+ A+SG DHSIKLKHTERGMVQKVV
Sbjct: 887  HFGKMQSKIGRVDSLDDDGFPFIGANLQNGDIVIGRCAESGVDHSIKLKHTERGMVQKVV 946

Query: 894  LSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVIN 953
            +S+NDDGKNF+VVSLRQVR+PCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVIN
Sbjct: 947  VSANDDGKNFAVVSLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVIN 1006

Query: 954  PHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKW 1013
            PHAFPSRQTPGQLLEAALGKGIA      C GL R+ATPF+T SVDAI +QLHRAGFS+W
Sbjct: 1007 PHAFPSRQTPGQLLEAALGKGIA------CGGLLRHATPFSTLSVDAIADQLHRAGFSRW 1060

Query: 1014 GTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGG 1073
            G ER+Y+GRTGEM+RSLIF+GPTFYQRLIHM+EDKVKFRNTGPVHPLTRQPV+DRKRFGG
Sbjct: 1061 GHERVYNGRTGEMLRSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVSDRKRFGG 1120

Query: 1074 IKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPY 1133
            IKFGEMERDCLIAHGAAANLHERLFTLSDS  MHICR+CKN++NVIQR V GGRKVRGPY
Sbjct: 1121 IKFGEMERDCLIAHGAAANLHERLFTLSDSAYMHICRRCKNISNVIQRSVAGGRKVRGPY 1180

Query: 1134 CRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTEFC 1173
            CR C+S ++IVK NVPYGAKLLCQELFSMGI+LKF+T+ C
Sbjct: 1181 CRYCESSEEIVKVNVPYGAKLLCQELFSMGISLKFETQLC 1220


>gi|356518213|ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Glycine
            max]
          Length = 1205

 Score = 1816 bits (4703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 866/1177 (73%), Positives = 1002/1177 (85%), Gaps = 20/1177 (1%)

Query: 10   DPTS---LCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETI 66
            DPT+   L +LGE+ +K +C+KA++ FFNEYGL+SHQINS+N FI  GLQK F+SFG+ +
Sbjct: 36   DPTNAEILEELGEDIVKYWCKKASMLFFNEYGLISHQINSFNHFIHTGLQKTFESFGDLV 95

Query: 67   VEPGYDPSKKGEGE-WRYASMRFGQVTLDKPSFFAGNG-GDEHDMFPRHARLQNMTYSSR 124
            V PG+DPSKKGE E +RYAS++FG V LDKP F+ G G   E  M PRHAR+Q MTY+S+
Sbjct: 96   VTPGFDPSKKGENEHFRYASVKFGNVKLDKPMFWGGEGNAQEFKMLPRHARIQRMTYASK 155

Query: 125  MKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVE 184
            +K++V+ QVY  K+V SDKFKTG+ +++ +EV+ ++   IIIGR+PVMVKSDLCWMK  E
Sbjct: 156  VKIQVKVQVYVPKKVRSDKFKTGKAEFLDREVMKEDEREIIIGRLPVMVKSDLCWMKEAE 215

Query: 185  KGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDM 244
            K D +FDHGGYFI+KGAEK F+AQEQ+ LKRLWV NS GW +AYKS+ KRNR++++LV  
Sbjct: 216  KEDDEFDHGGYFIVKGAEKTFIAQEQLYLKRLWVMNSPGWMIAYKSQMKRNRMVIKLVGN 275

Query: 245  SKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASI 304
            S+ E+++ G+  L+VYFLS E+P+W+LFFALGVSSDKEIV+LI    +D  I NILFAS+
Sbjct: 276  SRGEEVENGDMSLAVYFLSVEVPVWVLFFALGVSSDKEIVDLIGCGNDDVRIQNILFASV 335

Query: 305  HDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYM 364
             DAD KC  FR+GR+A++Y++K +K   FPP ES +EC+  Y+FP + G  +KARFL YM
Sbjct: 336  RDADEKCGAFRRGRHAVQYLEKCVKSVQFPPSESMQECLEMYVFPGISGLNRKARFLAYM 395

Query: 365  VKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRT 424
            VK LL AY+GRRKCDNRDDFRNKRLELA ELL+RELKVHIAHARKRMAKALQRDLYGDR 
Sbjct: 396  VKGLLLAYTGRRKCDNRDDFRNKRLELASELLDRELKVHIAHARKRMAKALQRDLYGDRD 455

Query: 425  VRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQ 484
            VRPIE+YLDASI+TNGL RAFSTGAWSHP+KR ERISG+VAN+GR NPLQT+ +LRR RQ
Sbjct: 456  VRPIEHYLDASIITNGLQRAFSTGAWSHPYKRMERISGVVANVGRTNPLQTMAELRRARQ 515

Query: 485  QVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST---SILEPIFEQL 541
            QVQYTGKVGDARYPHPSHWGK+CFLSTPDGENCGLVKNL VTGLVST   ++ E I  +L
Sbjct: 516  QVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTGLVSTDVSAVSEYILPKL 575

Query: 542  FNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
             + GME+L DD S  LG K KV ++GDW+GVC DS SFV+ELR +RRR ELP QVEIKRD
Sbjct: 576  LDCGMEELVDDTSTHLGNKDKVLLNGDWVGVCPDSSSFVAELRSRRRRNELPHQVEIKRD 635

Query: 602  ELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCT 661
            + Q EVRI+ DAGRILRPLLVV N+ KIK  +    +FQ+LLD G+IEL+G EEEEDCCT
Sbjct: 636  QSQHEVRIYSDAGRILRPLLVVGNLLKIKGFKSDCNSFQSLLDKGVIELIGPEEEEDCCT 695

Query: 662  AWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAI 721
            AWG++YL    E K+ +K+THCELDMSFLLGLSC ++PFANHDHARRVLYQSQKHSSQAI
Sbjct: 696  AWGVEYLFGK-EGKRSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAI 754

Query: 722  GFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKP--GYGHNHIL---PRPELYNGQN 776
            GF TTNP+IRVDTLSHQL YPQ+PLFRTM SDCLGKP    G N I    P+ E YNGQN
Sbjct: 755  GFSTTNPNIRVDTLSHQLHYPQKPLFRTMASDCLGKPDNSLGQNKISKIPPKAEFYNGQN 814

Query: 777  AIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFG 836
            AIVAVNVHLGYNQEDSLVMNRASL+RGMFRSEHIRSYK+E+DNKE   K+R  +D+VNF 
Sbjct: 815  AIVAVNVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYKSEIDNKESSDKKRKPEDIVNFA 874

Query: 837  KIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSS 896
            K+QSKIGRVDSLDDDGFP++GANLQSGDI+IGK A+SGAD+S+KLKHTERG VQKVVLSS
Sbjct: 875  KLQSKIGRVDSLDDDGFPYVGANLQSGDIIIGKGAESGADNSVKLKHTERGYVQKVVLSS 934

Query: 897  NDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHA 956
            ND+GKNF+VVSLRQVRSP LGDKFSSMHGQKGVLGFLESQENFPFT QGIVPDIVINPHA
Sbjct: 935  NDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHA 994

Query: 957  FPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTE 1016
            FPSRQTPGQLLEAALGKGIA      C G+ R ATPF+TPSVDAITEQLHRAGFS+WG E
Sbjct: 995  FPSRQTPGQLLEAALGKGIA------CGGILRQATPFSTPSVDAITEQLHRAGFSRWGNE 1048

Query: 1017 RLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKF 1076
            R+Y+GRTGEMVRSLIF+GPTFYQRL HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKF
Sbjct: 1049 RVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKF 1108

Query: 1077 GEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRI 1136
            GEMERDCLIAHGA+ANL+ERLFTLSDS Q+HIC KCKNVANVI R V GGRK+RGPYCR 
Sbjct: 1109 GEMERDCLIAHGASANLYERLFTLSDSSQIHICSKCKNVANVILRPVSGGRKIRGPYCRH 1168

Query: 1137 CDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTEFC 1173
            C+S DDIV A+VPYGAKLLCQELFSMGI LKF+T+ C
Sbjct: 1169 CESADDIVVAHVPYGAKLLCQELFSMGINLKFETQLC 1205


>gi|356509878|ref|XP_003523670.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Glycine
            max]
          Length = 1205

 Score = 1814 bits (4699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 856/1172 (73%), Positives = 999/1172 (85%), Gaps = 14/1172 (1%)

Query: 9    TDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVE 68
            T+   L +LGE+ +K +C+KA++ FF+EYGL+SHQINS+N F+  GLQ  FDSFG+ +V 
Sbjct: 41   TNSEILEELGEDMVKYWCKKASMLFFDEYGLISHQINSFNHFVAIGLQNTFDSFGDLVVT 100

Query: 69   PGYDPSKKGEGE-WRYASMRFGQVTLDKPSFFAGNG-GDEHDMFPRHARLQNMTYSSRMK 126
            PG+DPSKKGE E +RYAS++FG+V LDKP F+ G G   E  M PRHAR+Q MTY+S++K
Sbjct: 101  PGFDPSKKGENEHFRYASVKFGKVKLDKPMFWGGEGNAQEFKMLPRHARIQRMTYASKVK 160

Query: 127  VKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG 186
            ++V+ QVY  K+V SDKFKTG+E+++ +E++ ++   IIIGR+PVMVKSDLCWMK  EK 
Sbjct: 161  IQVKVQVYVPKKVRSDKFKTGKEEFLDREIMKEDEREIIIGRLPVMVKSDLCWMKDAEKD 220

Query: 187  DCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSK 246
            D +FDHGGYFI+KGAEK F+AQEQ+ LKRLWV NS GW +AYKS+ KRNR++++LV  S+
Sbjct: 221  DDEFDHGGYFIVKGAEKTFIAQEQLYLKRLWVMNSPGWMIAYKSQMKRNRMVIKLVGNSR 280

Query: 247  FEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHD 306
             E+++ G+  L+VYFLS E+P+W+LFFALGVSSDKEIV+LI    +D  I NILFAS+ D
Sbjct: 281  SEEVENGDMCLTVYFLSVEVPVWVLFFALGVSSDKEIVDLIGCGNDDVRIQNILFASVRD 340

Query: 307  ADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVK 366
            AD KC  FR+ RNA++Y++K +K   FPP ES +EC+  Y+FP + G  +KARFL YMVK
Sbjct: 341  ADEKCGAFRRVRNAVQYLEKCVKSVQFPPSESMQECLEMYVFPGISGLNRKARFLAYMVK 400

Query: 367  CLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR 426
             LL AY+GRRKCDNRDDFRNKRLELA ELL+RELKVH+AHARKRMAKALQRDLYGDR VR
Sbjct: 401  GLLLAYTGRRKCDNRDDFRNKRLELASELLDRELKVHVAHARKRMAKALQRDLYGDRDVR 460

Query: 427  PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
            PIE+YLDASI+TNGL RAFSTGAWSHP+KR ERISG+VAN+GR NPLQT+ +LRR RQQV
Sbjct: 461  PIEHYLDASIITNGLQRAFSTGAWSHPYKRMERISGVVANVGRTNPLQTMAELRRARQQV 520

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVS---TSILEPIFEQLFN 543
            QYTGKVGDARYPHPSHWGK+CFL+TPDGENCGLVKNL VTGLVS   T + E I  +L +
Sbjct: 521  QYTGKVGDARYPHPSHWGKVCFLTTPDGENCGLVKNLSVTGLVSTDVTDVTESILLKLVD 580

Query: 544  SGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDEL 603
             GM++L DD S  LG   KV ++GDW+GVC DS SFV+ELR +RRR ELP QVEIKRD+ 
Sbjct: 581  CGMQELVDDTSTHLGSMDKVLLNGDWVGVCPDSSSFVAELRSRRRRNELPHQVEIKRDQS 640

Query: 604  QSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAW 663
            Q EVRI+ DAGRILRPLLVV N+ KIK  +   Y+FQ+LLD G+IEL+G EEEEDCCTAW
Sbjct: 641  QHEVRIYSDAGRILRPLLVVGNLLKIKGFKSDRYSFQSLLDKGVIELIGPEEEEDCCTAW 700

Query: 664  GIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGF 723
            G++YL    E K+ +K+THCELDMSFLLGLSC ++PFANHDHARRVLYQSQKHSSQAIGF
Sbjct: 701  GVEYLFGK-EGKRSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGF 759

Query: 724  PTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGY--GHNHILPRPELYNGQNAIVAV 781
             TTNP+IRVDTLSHQL YPQ+PLFRTM SDCLGKP +  G + I P+ E YNGQNAIVAV
Sbjct: 760  STTNPNIRVDTLSHQLHYPQKPLFRTMTSDCLGKPDHSLGQSKIPPKAEFYNGQNAIVAV 819

Query: 782  NVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSK 841
            NVHLGYNQEDSLVMNRASL+RGMFRSEHIRSYK+E+DNKE   K+R  +D+VNF K+QSK
Sbjct: 820  NVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYKSEIDNKESSDKKRKPEDIVNFAKLQSK 879

Query: 842  IGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGK 901
            IGRVDSLDDDGFP++GANLQSGDI+IGK A+SGAD+S+KLKHTERG VQKVVLSSND+GK
Sbjct: 880  IGRVDSLDDDGFPYVGANLQSGDIIIGKCAESGADNSVKLKHTERGYVQKVVLSSNDEGK 939

Query: 902  NFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQ 961
            NF+VVSLRQVRSP LGDKFSSMHGQKGVLGFLESQENFPFT QGIVPDIVINPHAFPSRQ
Sbjct: 940  NFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQ 999

Query: 962  TPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDG 1021
            TPGQLLEAALGKGIA      C G+ + ATPF+TPSVDAITEQLHRAGFS+WG ER+Y+G
Sbjct: 1000 TPGQLLEAALGKGIA------CGGILKQATPFSTPSVDAITEQLHRAGFSRWGNERVYNG 1053

Query: 1022 RTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMER 1081
            RTGEMVRSLIF+GPTFYQRL HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMER
Sbjct: 1054 RTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMER 1113

Query: 1082 DCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGD 1141
            DCLIAHGA+ANL+ERLFTLSDS Q+HIC KCK VANVI R V GGRK+RGPYCR C+S D
Sbjct: 1114 DCLIAHGASANLYERLFTLSDSSQIHICSKCKKVANVILRPVSGGRKIRGPYCRHCESAD 1173

Query: 1142 DIVKANVPYGAKLLCQELFSMGITLKFDTEFC 1173
            DIV A+VPYGAKLLCQELFSMGI LKF+T+ C
Sbjct: 1174 DIVVAHVPYGAKLLCQELFSMGINLKFETQLC 1205


>gi|357466021|ref|XP_003603295.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
 gi|355492343|gb|AES73546.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
          Length = 1237

 Score = 1805 bits (4674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 869/1212 (71%), Positives = 1001/1212 (82%), Gaps = 60/1212 (4%)

Query: 14   LCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDP 73
            L +LG++ +K FC+KA+V FF++YGL+SHQINSYN+FI +GLQ AFDSFG+  V PG+DP
Sbjct: 34   LNELGDDMVKYFCKKASVMFFDQYGLISHQINSYNQFINSGLQSAFDSFGDLTVTPGFDP 93

Query: 74   SKKGEGE-WRYASMRFGQVTLDKPSFFAGNG-GDEHDMFPRHARLQNMTYSSRMKVKVQF 131
            SKKG  E +RYA+++FG+VTL++P F+ G G   E  M PRHARLQ MTY+S+MKV V  
Sbjct: 94   SKKGADEHYRYATVKFGKVTLERPKFWCGEGNAQELKMLPRHARLQRMTYASKMKVDVHI 153

Query: 132  QVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCDFD 191
            QVY  K+V SDKFKTG+E+YI K++  ++T  I IGR+PVMVKSDLCWM   EKGDC+FD
Sbjct: 154  QVYVMKKVRSDKFKTGKEEYIDKDIKWEDTREITIGRLPVMVKSDLCWMSEAEKGDCEFD 213

Query: 192  HGGYFIIKGAEK------------------------------------------------ 203
            HGGYF+IKGAEK                                                
Sbjct: 214  HGGYFLIKGAEKLWRLLVADFDIADVVNGGQYCRFFRHKCATKWSKLQKFGSPPQYAIEN 273

Query: 204  -VFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFL 262
             +F+AQEQI LKRLWVSN   W VA+KS+ KRNR++V+LV+ S  E I  GEK+L+VYFL
Sbjct: 274  TIFIAQEQIFLKRLWVSNIPYWAVAFKSQMKRNRMVVKLVEGST-EGITNGEKLLTVYFL 332

Query: 263  STEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALK 322
            S EIP+WILFFALGV+SDKEIV+LID+   +  I NILFASI +AD+KC+ FR+G+NAL 
Sbjct: 333  SVEIPVWILFFALGVTSDKEIVDLIDYGEANGRIENILFASIREADDKCEAFRRGKNALL 392

Query: 323  YVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRD 382
            ++++ +KG  FPP ES +EC N Y+FP++ G K+KAR+L YMVK LL AY+GRRK DNRD
Sbjct: 393  FLEERVKGVQFPPAESIDECFNMYVFPNVKGLKRKARYLAYMVKVLLLAYTGRRKTDNRD 452

Query: 383  DFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLS 442
            DFRNKRLELAGELLERE+KVH AHARKRM KALQRDLYG+R VR IE+YLDASI+TNGL 
Sbjct: 453  DFRNKRLELAGELLEREIKVHFAHARKRMGKALQRDLYGEREVRQIEHYLDASIITNGLQ 512

Query: 443  RAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSH 502
            RAFSTGAW+HPFKR ERISG+VA LGR NPLQT+ +LRRTRQQVQYTGKVGDARYPHPSH
Sbjct: 513  RAFSTGAWTHPFKRMERISGVVATLGRTNPLQTMAELRRTRQQVQYTGKVGDARYPHPSH 572

Query: 503  WGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFNSGMEKLADDASYSLGGKFK 562
            WGK+CFLSTPDGENCGLVKNL VTG+VST + E I  QL + GME+L DD +  LG K K
Sbjct: 573  WGKVCFLSTPDGENCGLVKNLAVTGVVSTDVTESILPQLSDCGMEELVDDTTTVLGKKDK 632

Query: 563  VFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLV 622
            VF++GDW+GVC DS+SFV+ELR +RRR ELP QVEIKRD+ Q EVRI  DAGRILRPLLV
Sbjct: 633  VFLNGDWVGVCSDSISFVAELRTRRRRNELPHQVEIKRDQCQQEVRILSDAGRILRPLLV 692

Query: 623  VENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTH 682
            V N+ KIK  + ++ +FQ+LLD+G+IEL+G EEEED  TAWG++YL    E K  +K+TH
Sbjct: 693  VSNLLKIKGSKSEHKSFQSLLDNGVIELIGPEEEEDFKTAWGVQYLFGK-EGKSSVKYTH 751

Query: 683  CELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYP 742
            CELDMSFLLGLSC ++PFANHDHARRVLYQSQKHSSQAIGF TTNP+IRVD LSHQLFYP
Sbjct: 752  CELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFATTNPNIRVDALSHQLFYP 811

Query: 743  QRPLFRTMISDCLGKPGY-GHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLE 801
            QRPLF+TM SDCLGKPGY G + ++P+ E YNGQNAIVAVNVHLGYNQEDSLVMNRASL+
Sbjct: 812  QRPLFQTMTSDCLGKPGYLGQSKVVPKSEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQ 871

Query: 802  RGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQ 861
            RGMFRSEHIRSYKAE++NKE   KR+  +D+VNFGKIQSKIGRVDSLDDDGFPF+GANLQ
Sbjct: 872  RGMFRSEHIRSYKAEIENKESSEKRKKPEDIVNFGKIQSKIGRVDSLDDDGFPFVGANLQ 931

Query: 862  SGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFS 921
            SGDI+IG+ ADSG DHSIKLKHTERG VQKVVLSSND+GKNF+VVSLRQVRSP LGDKFS
Sbjct: 932  SGDIIIGRCADSGTDHSIKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFS 991

Query: 922  SMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKG 981
            SMHGQKGVLGFLESQENFPFT QGIVPDIVINPHAFPSRQTPGQLLEAALGKGIA     
Sbjct: 992  SMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIA----- 1046

Query: 982  ICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRL 1041
             C G  R ATPF+T SV+AIT+QLHRAGFS+WG ER+Y+GRTGEMVRSLIF+GPTFYQRL
Sbjct: 1047 -CVGSLRNATPFSTSSVEAITDQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRL 1105

Query: 1042 IHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLS 1101
             HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA+ANL+ERLFTLS
Sbjct: 1106 HHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYERLFTLS 1165

Query: 1102 DSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFS 1161
            DS Q+HIC KCKNVANVI R V GGRK+RGPYCR C+S DDIV A+VPYGAKLL QELFS
Sbjct: 1166 DSSQIHICSKCKNVANVILRPVSGGRKIRGPYCRFCESADDIVVASVPYGAKLLSQELFS 1225

Query: 1162 MGITLKFDTEFC 1173
            MGI LKF+TE C
Sbjct: 1226 MGINLKFETELC 1237


>gi|297830452|ref|XP_002883108.1| NRPD2a [Arabidopsis lyrata subsp. lyrata]
 gi|297328948|gb|EFH59367.1| NRPD2a [Arabidopsis lyrata subsp. lyrata]
          Length = 1169

 Score = 1696 bits (4391), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 813/1184 (68%), Positives = 975/1184 (82%), Gaps = 31/1184 (2%)

Query: 1    MDSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFD 60
            MD D+       +L +LGE FL++FC+KAA SFF E+GL+SHQ+NSYN FI++GL+  F+
Sbjct: 6    MDIDEIEIAGQMNLSELGETFLQSFCKKAATSFFEEFGLISHQLNSYNFFIEHGLRNVFE 65

Query: 61   SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
            SFGE +VEP +D  KK +G+WRYA+++FG+VT +KP+FF+ +   E +  P HARLQNMT
Sbjct: 66   SFGEMLVEPSFDVIKKKDGDWRYATVKFGEVTFEKPTFFSDD--KELEFLPWHARLQNMT 123

Query: 121  YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
            YS+R+KV VQ +V+ +  V SDKFKTG+++Y++KE+L  +  +I+IG IPVMVKS LC  
Sbjct: 124  YSARIKVNVQVEVFKKTVVKSDKFKTGQDEYVEKEILDVKKQDILIGSIPVMVKSVLCKT 183

Query: 181  --KGVE---KGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRN 235
              KG E   KGDC FD GGYF+IKGAEKVF+AQEQ+C KRLW+SNS  WTV+++SE KRN
Sbjct: 184  SEKGKENCKKGDCAFDQGGYFVIKGAEKVFIAQEQMCTKRLWISNS-PWTVSFRSETKRN 242

Query: 236  RLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCS 295
            R IVRL +  K +D K  EKVL+VYFLSTEIP+W+LFFALGVSSDKE ++LI F   D S
Sbjct: 243  RFIVRLSENEKADDYKRREKVLTVYFLSTEIPVWLLFFALGVSSDKEAMDLIAFDGVDAS 302

Query: 296  ILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTK 355
            I N L ASIH+AD  C+ FR G NAL YV+  IK T FPP ES ++C+  YLFP L G K
Sbjct: 303  ITNSLIASIHEADAVCEAFRCGNNALTYVEHQIKSTKFPPAESVDDCLRLYLFPGLQGLK 362

Query: 356  QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKAL 415
            +KARFLGYMVKCLL AY+G+RKC+NRD FRNKR+ELAGELLERE++VH+AHAR++M +A+
Sbjct: 363  KKARFLGYMVKCLLSAYAGKRKCENRDSFRNKRIELAGELLEREIRVHLAHARRKMTRAM 422

Query: 416  QRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQT 475
            Q+ L G+  ++PIE+YLDAS++TNGL+RAFSTGAWSHPF++ ER+SG+VANLGRANPLQ+
Sbjct: 423  QKQLSGEGELKPIEHYLDASVITNGLNRAFSTGAWSHPFRKMERVSGVVANLGRANPLQS 482

Query: 476  LVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE 535
            L+DLRRTRQQV YTGKVGDARYPHPSHWG++CFLSTPDGENCGLVKN+ + GLVST +LE
Sbjct: 483  LIDLRRTRQQVLYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVSTQVLE 542

Query: 536  PIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQ 595
             + E L+  GME+L DD S  L GK KV ++GDW+G+C DS SFV+EL+ +RR+ ELP +
Sbjct: 543  SVVEMLYACGMEELMDDTSTPLCGKHKVLLNGDWVGLCADSESFVAELKSRRRQSELPRE 602

Query: 596  VEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEE 655
            +EIKRD+  +EVRIF DAGR+LRPLLVVEN+ K+K  +   Y F+ LLD GI+EL+G EE
Sbjct: 603  MEIKRDKDDNEVRIFTDAGRLLRPLLVVENLHKLKQDKPTQYPFKHLLDQGILELIGIEE 662

Query: 656  EEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQK 715
            EEDC TAWGIK LLK+     P  +THCELD+SFLLG+SC I+PFANHDH +RVLYQSQK
Sbjct: 663  EEDCNTAWGIKQLLKE-----PKNYTHCELDLSFLLGVSCAIVPFANHDHGKRVLYQSQK 717

Query: 716  HSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQ 775
            H  QAIGF +TNP+IR DTLS QLFYPQ+PLF+T+ S+CL K             L+NGQ
Sbjct: 718  HCQQAIGFSSTNPNIRCDTLSQQLFYPQKPLFKTVASECLKK-----------EVLFNGQ 766

Query: 776  NAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF 835
            NAIVAVNVHLGYNQEDS+VMN+ASLERGMFRSE IRSYKAEVD K+ + KR+  D++V F
Sbjct: 767  NAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVDTKDSE-KRKKMDELVKF 825

Query: 836  GKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKVVLS 895
            GK  SKIG+VDSL+DDGFPFIGAN+ +GDIVIG+  DSGADHSIKLKHTERG+VQKVVLS
Sbjct: 826  GKTYSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCTDSGADHSIKLKHTERGIVQKVVLS 885

Query: 896  SNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPH 955
            SND+GKNF+ VSLRQVRSPCLGDKFSSMHGQKGVLG+LE Q+NFPFTIQGIVPDIVINPH
Sbjct: 886  SNDEGKNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPH 945

Query: 956  AFPSRQTPGQLLEAALGKGIAAL------GKGICSGLKRYATPFATPSVDAITEQLHRAG 1009
            AFPSRQTPGQLLEAAL KGIA+            + L R+ATPF+TP V  ITEQLHRAG
Sbjct: 946  AFPSRQTPGQLLEAALSKGIASPIQKKEGSSAAYTKLTRHATPFSTPGVTEITEQLHRAG 1005

Query: 1010 FSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRK 1069
            FS+WG ER+Y+GR+GEM+RSLIF+GPTFYQRL+HMSEDKVKFRNTGPVHPLTRQPVAD+K
Sbjct: 1006 FSRWGNERVYNGRSGEMMRSLIFMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADKK 1065

Query: 1070 RFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKV 1129
            RFGGIKFGEMERDCLIAHGA+ANLHERLFTLSDS QMHICRKCK  ANVI+R    GRK+
Sbjct: 1066 RFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHICRKCKTYANVIERTPSSGRKI 1125

Query: 1130 RGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTEFC 1173
            RGPYCR+C S D +V+  VPYGAKLLCQELFSMGITL FDT+ C
Sbjct: 1126 RGPYCRVCASSDHVVRVYVPYGAKLLCQELFSMGITLNFDTKLC 1169


>gi|79416709|ref|NP_189020.2| nuclear RNA polymerase D2A [Arabidopsis thaliana]
 gi|334185578|ref|NP_001189957.1| nuclear RNA polymerase D2A [Arabidopsis thaliana]
 gi|75335101|sp|Q9LK40.1|RPD2A_ARATH RecName: Full=DNA-directed RNA polymerase D subunit 2a;
            Short=AtNRPD2a; Short=Nuclear RNA polymerase D 2a;
            AltName: Full=Nuclear RNA polymerase E 2; AltName:
            Full=Protein DEFECTIVE IN MERISTEM SILENCING 2; AltName:
            Full=Protein DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 2;
            AltName: Full=RNA polymerase IV subunit 2a; Short=POL IV
            2a
 gi|9293951|dbj|BAB01854.1| DNA-directed RNA polymerase, subunit B [Arabidopsis thaliana]
 gi|57791156|gb|AAW56422.1| polymerase IV second largest subunit [Arabidopsis thaliana]
 gi|62183738|gb|AAX73261.1| RNA polymerase IV second-largest subunit [Arabidopsis thaliana]
 gi|332643291|gb|AEE76812.1| nuclear RNA polymerase D2A [Arabidopsis thaliana]
 gi|332643292|gb|AEE76813.1| nuclear RNA polymerase D2A [Arabidopsis thaliana]
          Length = 1172

 Score = 1693 bits (4385), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 814/1175 (69%), Positives = 970/1175 (82%), Gaps = 30/1175 (2%)

Query: 9    TDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVE 68
            T   +L +LGE FL++FC+KAA SFF++YGL+SHQ+NSYN FI++GLQ  F SFGE +VE
Sbjct: 18   TGEINLSELGEGFLQSFCKKAATSFFDKYGLISHQLNSYNYFIEHGLQNVFQSFGEMLVE 77

Query: 69   PGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVK 128
            P +D  KK + +WRYA+++FG+VT++KP+FF+ +   E +  P HARLQNMTYS+R+KV 
Sbjct: 78   PSFDVVKKKDNDWRYATVKFGEVTVEKPTFFSDD--KELEFLPWHARLQNMTYSARIKVN 135

Query: 129  VQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM--KGVE-- 184
            VQ +V+    V SDKFKTG++ Y++K++L  +  +I+IG IPVMVKS LC    KG E  
Sbjct: 136  VQVEVFKNTVVKSDKFKTGQDNYVEKKILDVKKQDILIGSIPVMVKSILCKTSEKGKENC 195

Query: 185  -KGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVD 243
             KGDC FD GGYF+IKGAEKVF+AQEQ+C KRLW+SNS  WTV+++SENKRNR IVRL +
Sbjct: 196  KKGDCAFDQGGYFVIKGAEKVFIAQEQMCTKRLWISNS-PWTVSFRSENKRNRFIVRLSE 254

Query: 244  MSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFAS 303
              K ED K  EKVL+VYFLSTEIP+W+LFFALGVSSDKE ++LI F  +D SI N L AS
Sbjct: 255  NEKAEDYKRREKVLTVYFLSTEIPVWLLFFALGVSSDKEAMDLIAFDGDDASITNSLIAS 314

Query: 304  IHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGY 363
            IH AD  C+ FR G NAL YV++ IK T FPP ES +EC++ YLFP L   K+KARFLGY
Sbjct: 315  IHVADAVCEAFRCGNNALTYVEQQIKSTKFPPAESVDECLHLYLFPGLQSLKKKARFLGY 374

Query: 364  MVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDR 423
            MVKCLL +Y+G+RKC+NRD FRNKR+ELAGELLERE++VH+AHAR++M +A+Q+ L GD 
Sbjct: 375  MVKCLLNSYAGKRKCENRDSFRNKRIELAGELLEREIRVHLAHARRKMTRAMQKHLSGDG 434

Query: 424  TVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTR 483
             ++PIE+YLDAS++TNGLSRAFSTGAWSHPF++ ER+SG+VANLGRANPLQTL+DLRRTR
Sbjct: 435  DLKPIEHYLDASVITNGLSRAFSTGAWSHPFRKMERVSGVVANLGRANPLQTLIDLRRTR 494

Query: 484  QQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFN 543
            QQV YTGKVGDARYPHPSHWG++CFLSTPDGENCGLVKN+ + GLVST  LE + E+LF 
Sbjct: 495  QQVLYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVSTQSLESVVEKLFA 554

Query: 544  SGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDEL 603
             GME+L DD    L GK KV ++GDW+G+C DS SFV+EL+ +RR+ ELP ++EIKRD+ 
Sbjct: 555  CGMEELMDDTCTPLFGKHKVLLNGDWVGLCADSESFVAELKSRRRQSELPREMEIKRDKD 614

Query: 604  QSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAW 663
             +EVRIF DAGR+LRPLLVVEN+ K+K  +   Y F  LLDHGI+EL+G EEEEDC TAW
Sbjct: 615  DNEVRIFTDAGRLLRPLLVVENLQKLKQEKPSQYPFDHLLDHGILELIGIEEEEDCNTAW 674

Query: 664  GIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGF 723
            GIK LLK+     P  +THCELD+SFLLG+SC ++PFANHDH RRVLYQSQKH  QAIGF
Sbjct: 675  GIKQLLKE-----PKIYTHCELDLSFLLGVSCAVVPFANHDHGRRVLYQSQKHCQQAIGF 729

Query: 724  PTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNV 783
             +TNP+IR DTLS QLFYPQ+PLF+T+ S+CL K             L+NGQNAIVAVNV
Sbjct: 730  SSTNPNIRCDTLSQQLFYPQKPLFKTLASECLKK-----------EVLFNGQNAIVAVNV 778

Query: 784  HLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIG 843
            HLGYNQEDS+VMN+ASLERGMFRSE IRSYKAEVD K+ + KR+  D++V FGK  SKIG
Sbjct: 779  HLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVDAKDSE-KRKKMDELVQFGKTHSKIG 837

Query: 844  RVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNF 903
            +VDSL+DDGFPFIGAN+ +GDIVIG+  +SGADHSIKLKHTERG+VQKVVLSSND+GKNF
Sbjct: 838  KVDSLEDDGFPFIGANMSTGDIVIGRCTESGADHSIKLKHTERGIVQKVVLSSNDEGKNF 897

Query: 904  SVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTP 963
            + VSLRQVRSPCLGDKFSSMHGQKGVLG+LE Q+NFPFTIQGIVPDIVINPHAFPSRQTP
Sbjct: 898  AAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTP 957

Query: 964  GQLLEAALGKGIAAL-----GKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERL 1018
            GQLLEAAL KGIA            + L R+ATPF+TP V  ITEQLHRAGFS+WG ER+
Sbjct: 958  GQLLEAALSKGIACPIQKEGSSAAYTKLTRHATPFSTPGVTEITEQLHRAGFSRWGNERV 1017

Query: 1019 YDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGE 1078
            Y+GR+GEM+RS+IF+GPTFYQRL+HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGE
Sbjct: 1018 YNGRSGEMMRSMIFMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGE 1077

Query: 1079 MERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICD 1138
            MERDCLIAHGA+ANLHERLFTLSDS QMHICRKCK  ANVI+R    GRK+RGPYCR+C 
Sbjct: 1078 MERDCLIAHGASANLHERLFTLSDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVCV 1137

Query: 1139 SGDDIVKANVPYGAKLLCQELFSMGITLKFDTEFC 1173
            S D +V+  VPYGAKLLCQELFSMGITL FDT+ C
Sbjct: 1138 SSDHVVRVYVPYGAKLLCQELFSMGITLNFDTKLC 1172


>gi|67515354|gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
          Length = 1123

 Score = 1662 bits (4303), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 790/1083 (72%), Positives = 915/1083 (84%), Gaps = 15/1083 (1%)

Query: 10   DPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP 69
            D   + +LGE FLK FC+KA+  FF +YG +SHQINSYN+FI  G+Q+ FDS GE  VEP
Sbjct: 48   DMVLIKELGESFLKNFCKKASTGFFEKYGSISHQINSYNDFINYGIQRVFDSVGEIHVEP 107

Query: 70   GYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGN-----GGDEH-DMFPRHARLQNMTYSS 123
            GYDPSK+G+G+W++AS++FG+VTL++P F+AG      GG E+ D+ PRHARLQNMTYS+
Sbjct: 108  GYDPSKRGDGDWKHASVKFGKVTLERPKFWAGEKFSVGGGKEYLDLLPRHARLQNMTYSA 167

Query: 124  RMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV 183
            R+ V+   QVYT+K V SDKFKTG ++++ KE   +   +++IGRIPVMV S+LCWM GV
Sbjct: 168  RIMVETHVQVYTKKLVRSDKFKTGVDRFVDKEWEVEGKRDVLIGRIPVMVNSELCWMNGV 227

Query: 184  EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVD 243
            +K DC+FDHGGYFI KGAEK F+AQEQ+CLKRLWVSN+  W V Y+   KR R+ ++L +
Sbjct: 228  DKLDCEFDHGGYFIAKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVYIKLTE 287

Query: 244  MSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFAS 303
              K E IKGGEK LSVY L+ E+PIW+LFFALGVSSD+E+VNLID   ED +I+NIL AS
Sbjct: 288  TLKLEHIKGGEKALSVYILA-EMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVAS 346

Query: 304  IHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGY 363
            IH+AD  C++FRKG+ AL YVD+LIK   FPP ES EEC+N YLFP+L G KQKARFLGY
Sbjct: 347  IHEADKNCEDFRKGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGY 406

Query: 364  MVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDR 423
            MVKCLL ++ GRRK DNRDDFRNKRLELAGELLEREL+ HI HA +RM KA+QRDLYGDR
Sbjct: 407  MVKCLLHSFIGRRKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDR 466

Query: 424  TVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTR 483
             V+PIE+YLDASI+TNGLSRAFSTG W HP+KR ER+SG+VA L R NPLQ   D+R++R
Sbjct: 467  QVQPIEHYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSR 526

Query: 484  QQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFN 543
            QQV YTGKVGDARYPHPSHWGK+CFLSTPDGENCGLVKNL   GLVST IL+P  E LF 
Sbjct: 527  QQVTYTGKVGDARYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKPFLETLFR 586

Query: 544  SGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDEL 603
             GM+KL DD S SL GK KV +DG+W+GVC+DS  FVS+LRRKRRR E+P QVE+KRDEL
Sbjct: 587  CGMQKLVDDCSTSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDEL 646

Query: 604  QSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAW 663
            Q EVRIF D GRILRPLLVV N+ KIK+L+G +Y FQ+LLD+GIIEL+G EEEEDC TAW
Sbjct: 647  QGEVRIFSDPGRILRPLLVVSNLKKIKALKGGDYGFQSLLDNGIIELIGPEEEEDCRTAW 706

Query: 664  GIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGF 723
            G++Y+LK  ++  P K+THCELDMSFLLGLSCGIIPFANHDHARRVLYQS+KHS QAIGF
Sbjct: 707  GVEYILKADKENPPAKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGF 766

Query: 724  PTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNH--ILPRPELYNGQNAIVAV 781
             T NP+ RVDT +HQL+YPQRPLFRTM++D LGKP        +LPRPE +NGQ AIVAV
Sbjct: 767  STVNPNNRVDTNTHQLYYPQRPLFRTMLADSLGKPKCAQYQKGMLPRPEYFNGQCAIVAV 826

Query: 782  NVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSK 841
            NVHLGYNQEDSLVMNRASLERGMFRSEH+RSYKAEVDNKE   K+   +D VNFGK QSK
Sbjct: 827  NVHLGYNQEDSLVMNRASLERGMFRSEHVRSYKAEVDNKEAMAKKLKIEDSVNFGKTQSK 886

Query: 842  IGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGK 901
            IGRVDSLDDDGFPFIGANLQSGDI+IGK+++SGADHS+KLKHTERGMVQKV+LS+ND+GK
Sbjct: 887  IGRVDSLDDDGFPFIGANLQSGDIIIGKFSESGADHSVKLKHTERGMVQKVLLSANDEGK 946

Query: 902  NFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQ 961
            NF+VVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQ
Sbjct: 947  NFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQ 1006

Query: 962  TPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDG 1021
            TPGQLLEAALGKGI ALG G     ++YATPF+T SVDAI EQL   GF++WG ER+Y+G
Sbjct: 1007 TPGQLLEAALGKGI-ALGGG-----QKYATPFSTLSVDAIMEQLQGRGFTRWGNERVYNG 1060

Query: 1022 RTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMER 1081
            RTGEMV SLIF+GPTFYQRLIHM+EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMER
Sbjct: 1061 RTGEMVHSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMER 1120

Query: 1082 DCL 1084
            DCL
Sbjct: 1121 DCL 1123


>gi|67515338|gb|AAY68198.1| RNA polymerase IV second largest subunit [Rhododendron macrophyllum]
          Length = 1019

 Score = 1657 bits (4291), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 789/1025 (76%), Positives = 897/1025 (87%), Gaps = 9/1025 (0%)

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCDFDHGGYFIIKGAEKVFVAQE 209
            QY+ K+ +S++  ++IIGRIPVM+KSDLCWM GVEK DCDFDHGGYF+IKGAEK F+AQE
Sbjct: 1    QYVDKDPISEDNRDVIIGRIPVMLKSDLCWMNGVEKSDCDFDHGGYFLIKGAEKTFIAQE 60

Query: 210  QICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIW 269
            QICLKRLWVSNS  WTVAY+  +KR R+ ++L +  K E I+GGEKVLSVYF + E PIW
Sbjct: 61   QICLKRLWVSNSPSWTVAYRDVSKRKRVYIKL-EPPKREHIRGGEKVLSVYFSAVEFPIW 119

Query: 270  ILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIK 329
            ILFFALG SSDKE+VNLID   ED  I+N+L ASI+DAD  C  FR+GRNA+  + K I+
Sbjct: 120  ILFFALGASSDKEVVNLIDCDGEDSRIVNVLIASIYDADENCKGFRRGRNAINDIMKKIE 179

Query: 330  GTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRL 389
               FPP ES E  ++ YLFP+L G +QKARFLGYMVKCLLQAY+GRRK DNRDDFRNKRL
Sbjct: 180  NCKFPPQESIEAFLSNYLFPNLSGFRQKARFLGYMVKCLLQAYTGRRKIDNRDDFRNKRL 239

Query: 390  ELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGA 449
            ELAGELLEREL+VH+ HA +RM KA+QRDLYG+R +  IE+YLDASI+TNGLSRAFSTGA
Sbjct: 240  ELAGELLERELRVHVKHAERRMVKAMQRDLYGERVIHAIEHYLDASIITNGLSRAFSTGA 299

Query: 450  WSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFL 509
            WSHP+K+ ERISG+VA L R NPLQT+ D+R+TRQQV YTGKVGDARYPHPSHWGKICFL
Sbjct: 300  WSHPYKKMERISGVVATLRRTNPLQTIADMRKTRQQVSYTGKVGDARYPHPSHWGKICFL 359

Query: 510  STPDGENCGLVKNLGVTGLVSTSILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDW 569
            STPDGENCGLVKNL +TGLVST+I E   ++L +SGMEKL DD S  L GK KVF+DG+W
Sbjct: 360  STPDGENCGLVKNLAITGLVSTNIEEHFLDKLLDSGMEKLVDDTSTLLSGKVKVFLDGNW 419

Query: 570  IGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKI 629
            +GVC DS+SFV+ LRRKRRRKE+P QVEIKRDE   EVR+F DAGRILRPLLVVEN+GKI
Sbjct: 420  VGVCGDSVSFVAALRRKRRRKEVPHQVEIKRDEQHREVRVFSDAGRILRPLLVVENLGKI 479

Query: 630  KSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSF 689
            K+ +G +Y+FQ+LLD G+IE +GTEEEEDC TAWGI YL  + E K  +K+THCELDMSF
Sbjct: 480  KASKGGDYSFQSLLDKGVIEFIGTEEEEDCRTAWGINYLFMENEAKATVKYTHCELDMSF 539

Query: 690  LLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRT 749
            LLGLS  IIPFANHDHARRVLYQS+KHS QA+GF TTNP+IRVDT +HQL+YPQRPLFRT
Sbjct: 540  LLGLSAAIIPFANHDHARRVLYQSEKHSQQAMGFNTTNPNIRVDTNTHQLYYPQRPLFRT 599

Query: 750  MISDCLGKPGY--GHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRS 807
            M+SDCLGKPGY  GHN I+PR E +NGQ AIVAVNVHLGYNQEDSLVMNRASLERGMFRS
Sbjct: 600  MVSDCLGKPGYPLGHNGIVPRAEYFNGQCAIVAVNVHLGYNQEDSLVMNRASLERGMFRS 659

Query: 808  EHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVI 867
            EHIRSYKA+VDNKE   K+   +D VNFGK+QSKIGRVDSLDDDGFPFIGANLQ+GDIV+
Sbjct: 660  EHIRSYKADVDNKESVGKKPKFEDSVNFGKVQSKIGRVDSLDDDGFPFIGANLQNGDIVV 719

Query: 868  GKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQK 927
            G+ A+SGADHSIKLKHTERGMVQKVVLS+ND+GKNF+VVSLRQVR+PCLGDKFSSMHGQK
Sbjct: 720  GRCAESGADHSIKLKHTERGMVQKVVLSANDEGKNFAVVSLRQVRTPCLGDKFSSMHGQK 779

Query: 928  GVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLK 987
            GVLGFLESQENFPFTIQGIVPDIV+NPHAFPSRQTPGQLLEAALGKGIA      C GL+
Sbjct: 780  GVLGFLESQENFPFTIQGIVPDIVVNPHAFPSRQTPGQLLEAALGKGIA------CGGLQ 833

Query: 988  RYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSED 1047
            +YATPF+T SVDA+T+QLHRAGFS+WG+ER+Y+GRTGEM+ SL+F+GPTFYQRL HMSED
Sbjct: 834  KYATPFSTLSVDAVTDQLHRAGFSRWGSERVYNGRTGEMIHSLVFMGPTFYQRLTHMSED 893

Query: 1048 KVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMH 1107
            KVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDS QMH
Sbjct: 894  KVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMH 953

Query: 1108 ICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLK 1167
            ICRKC N+ANVIQR V GGRK+RGPYCR C+S ++IV+ NVPYGAKLL QELFSMGIT+K
Sbjct: 954  ICRKCNNIANVIQRAVPGGRKIRGPYCRFCESVEEIVRVNVPYGAKLLAQELFSMGITMK 1013

Query: 1168 FDTEF 1172
            FDTE 
Sbjct: 1014 FDTEL 1018


>gi|75311613|sp|Q9LV32.1|RPD2B_ARATH RecName: Full=DNA-directed RNA polymerase D subunit 2b;
            Short=AtNRPD2b; Short=Nuclear RNA polymerase D 2b;
            AltName: Full=RNA polymerase IV subunit 2b; Short=POL IV
            2b
 gi|9294064|dbj|BAB02021.1| DNA-dependent RNA polymerase II [Arabidopsis thaliana]
          Length = 1119

 Score = 1610 bits (4169), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 785/1184 (66%), Positives = 936/1184 (79%), Gaps = 76/1184 (6%)

Query: 1    MDSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFD 60
            MD D+       ++ +LGE FL+TFC+KAA SFF E+GL+SHQ+NSYN FI++GLQ  F+
Sbjct: 1    MDVDEIESAGQINISELGESFLQTFCKKAATSFFEEFGLISHQLNSYNFFIEHGLQNVFE 60

Query: 61   SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
            SFG+ +VEP +D  KK +G+WRYA+                                   
Sbjct: 61   SFGDILVEPSFDVIKKKDGDWRYAT----------------------------------- 85

Query: 121  YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
                        V+ +  +  DKFKTG+++Y++KE+L  +  +I+IG IPVMVKS LC  
Sbjct: 86   ------------VFKKIVIKHDKFKTGQDEYVEKEILDVKKQDILIGSIPVMVKSVLCKT 133

Query: 181  --KGVE---KGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRN 235
              KG E   KG+C FD GGYF+IKGAEKVF+AQEQ+C KRLW+SNS  WTV+++SE KRN
Sbjct: 134  SEKGKENCKKGNCAFDQGGYFVIKGAEKVFIAQEQMCTKRLWISNS-PWTVSFRSETKRN 192

Query: 236  RLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCS 295
            R IVRL +  K ED K  EKVL+VYFLSTEIP+W+LFFALGVSSDKE ++LI F  +D S
Sbjct: 193  RFIVRLSENEKAEDYKIMEKVLTVYFLSTEIPVWLLFFALGVSSDKEAMDLIAFDGDDAS 252

Query: 296  ILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTK 355
            I N L ASIH+AD  C+ FR G NAL YV+  IK T FPP ES ++C+  YLFP L G K
Sbjct: 253  ITNSLIASIHEADAVCEAFRCGNNALTYVEHQIKSTKFPPAESVDDCLRLYLFPCLQGLK 312

Query: 356  QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKAL 415
            +KARFLGYMVKCLL AY+G+RKC+NRD FRNKR+ELAGELLERE++VH+AHAR++M +A+
Sbjct: 313  KKARFLGYMVKCLLSAYAGKRKCENRDSFRNKRIELAGELLEREIRVHLAHARRKMTRAM 372

Query: 416  QRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQT 475
            Q+ L GD  ++PIE+YLDAS++TNGL+RAFSTGAWSHPF++ ER+SG+VANLGRANPLQT
Sbjct: 373  QKQLSGDGDLKPIEHYLDASVITNGLNRAFSTGAWSHPFRKMERVSGVVANLGRANPLQT 432

Query: 476  LVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE 535
            L+DLRRTRQQV YTGKVGDAR+PHPSHWG++CFLSTPDGENCGLVKN+ + GLVST  LE
Sbjct: 433  LIDLRRTRQQVLYTGKVGDARHPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVSTQGLE 492

Query: 536  PIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQ 595
             + E LF  GME+L +D S  L GK KV ++GDW+G+C DS SFV EL+ +RR+ ELP +
Sbjct: 493  SVVEMLFTCGMEELMNDTSTPLCGKHKVLLNGDWVGLCADSESFVGELKSRRRQSELPLE 552

Query: 596  VEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEE 655
            +EIKRD+  +EVRIF DAGR+LRPLLVVEN+ K+K  +   Y F+ LLD GI+EL+G EE
Sbjct: 553  MEIKRDKDDNEVRIFTDAGRLLRPLLVVENLHKLKQDKPTQYPFKHLLDQGILELIGIEE 612

Query: 656  EEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQK 715
            EEDC TAWGIK LLK+     P  +THCELD+SFLLG+SC I+PFANHDH +RVLYQSQK
Sbjct: 613  EEDCTTAWGIKQLLKE-----PKNYTHCELDLSFLLGVSCAIVPFANHDHGKRVLYQSQK 667

Query: 716  HSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQ 775
            H  QAIGF +TNP+IR DTLS QLFYPQ+PLF+T+ S+CL K             L+NGQ
Sbjct: 668  HCQQAIGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASECLEK-----------EVLFNGQ 716

Query: 776  NAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF 835
            NAIVAVNVHLGYNQEDS+VMN+ASLERGMFRSE IRSYKAEVD K+ + KR+  D++V F
Sbjct: 717  NAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVDTKDSE-KRKKMDELVQF 775

Query: 836  GKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKVVLS 895
            GK  SKIG+VDSL+DDGFPFIGAN+ +GDIVIG+  +SGADHSIKLKHTERG+VQKVVLS
Sbjct: 776  GKTYSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCTESGADHSIKLKHTERGIVQKVVLS 835

Query: 896  SNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPH 955
            SND+GKNF+ VSLRQVRSPCLGDKFSSMHGQKGVLG+LE Q+NFPFTIQGIVPDIVINPH
Sbjct: 836  SNDEGKNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPH 895

Query: 956  AFPSRQTPGQLLEAALGKGIAAL------GKGICSGLKRYATPFATPSVDAITEQLHRAG 1009
            AFPSRQTPGQLLEAAL KGIA             + L R+ATPF+TP V  ITEQLHRAG
Sbjct: 896  AFPSRQTPGQLLEAALSKGIACPIQKKEGSSAAYTKLTRHATPFSTPGVTEITEQLHRAG 955

Query: 1010 FSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRK 1069
            FS+WG ER+Y+GR+GEM+RSLIF+GPTFYQRL+HMSE+KVKFRNTGPVHPLTRQPVADRK
Sbjct: 956  FSRWGNERVYNGRSGEMMRSLIFMGPTFYQRLVHMSENKVKFRNTGPVHPLTRQPVADRK 1015

Query: 1070 RFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKV 1129
            RFGGI+FGEMERDCLIAHGA+ANLHERLFTLSDS QMHICRKCK  ANVI+R    GRK+
Sbjct: 1016 RFGGIRFGEMERDCLIAHGASANLHERLFTLSDSSQMHICRKCKTYANVIERTPSSGRKI 1075

Query: 1130 RGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTEFC 1173
            RGPYCR+C S D +V+  VPYGAKLLCQELFSMGITL FDT+ C
Sbjct: 1076 RGPYCRVCASSDHVVRVYVPYGAKLLCQELFSMGITLNFDTKLC 1119


>gi|449485305|ref|XP_004157128.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
            sativus]
          Length = 1031

 Score = 1579 bits (4088), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 745/1007 (73%), Positives = 866/1007 (85%), Gaps = 16/1007 (1%)

Query: 8    FTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIV 67
            +++P ++ DLGE FLK FC+K++++FFN+YGL+SHQINSYN+FIKNG+QKAFD FG+ +V
Sbjct: 34   YSEPVNIHDLGEAFLKDFCKKSSMAFFNQYGLISHQINSYNDFIKNGIQKAFDFFGDILV 93

Query: 68   EPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNG-GDEHDMFPRHARLQNMTYSSRMK 126
            +PGYDPSKKG+GEWRYA+++FG+VTLDKP F+ G   G E++M PRHARLQNMTYSSRMK
Sbjct: 94   QPGYDPSKKGDGEWRYATVKFGKVTLDKPKFWGGAASGKEYNMLPRHARLQNMTYSSRMK 153

Query: 127  VKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTN--IIIGRIPVMVKSDLCWMKGVE 184
            + +  ++YTQK V+SDKFKTG++QY+ KE +   + N  + IGR+PVMV SDLCWMK  +
Sbjct: 154  INISLEIYTQKLVSSDKFKTGKDQYVDKEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQ 213

Query: 185  KGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDM 244
            K DC+FD GGYF+IKGAEK+F+AQEQICL+RLW+SN  GWTVAY+SE KRNRLI+RLV+ 
Sbjct: 214  KRDCEFDRGGYFLIKGAEKIFIAQEQICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVEN 273

Query: 245  SKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASI 304
            SK ED+K  EKVL+VYFLSTE+P+WILFFALGVSSDKEIV+LID+  +D ++LNILFAS+
Sbjct: 274  SKSEDLKSKEKVLNVYFLSTEVPVWILFFALGVSSDKEIVDLIDYGRDDPTVLNILFASV 333

Query: 305  HDADN--KCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLG 362
             + DN  K  +FR+G+ AL ++D  I+ T+FPP +  E+C+N YLF SL G+KQK  FLG
Sbjct: 334  REVDNDDKWKDFRRGKRALTFLDNEIRKTSFPPADKIEDCLNLYLFASLKGSKQKCHFLG 393

Query: 363  YMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGD 422
            YMVKCLLQAY+GRRKCDNRDDFRNKR ELA ELLERELKVHIAHAR+RM KALQRDLYGD
Sbjct: 394  YMVKCLLQAYTGRRKCDNRDDFRNKRFELAAELLERELKVHIAHARRRMEKALQRDLYGD 453

Query: 423  RTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
            R V PIE+YLDASI+TNGLSRAFSTGAW+H FKR ERISG+VA LGRANPLQT+ +LRRT
Sbjct: 454  RQVHPIEHYLDASIITNGLSRAFSTGAWAHAFKRMERISGVVATLGRANPLQTMAELRRT 513

Query: 483  RQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLF 542
            RQQV YTGKVGDARYPHPSHWG++CFLSTPDGENCGL+KNL  TGLVS +  + I   LF
Sbjct: 514  RQQVAYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLIKNLSGTGLVSLNTKKSITPTLF 573

Query: 543  NSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
              GME L D+ S S  GK+++F+DG+W+GVC+DSLSFV+ +RRKRRR     QVE+KRDE
Sbjct: 574  RCGMENLVDNTSTSFCGKYRIFLDGEWVGVCEDSLSFVTNVRRKRRRNPFLHQVEVKRDE 633

Query: 603  LQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTA 662
               EVRIF DAGRILRPLLVVEN+ +I   +G+NYTFQ+LLD GIIEL+GTEEEEDC  A
Sbjct: 634  QLKEVRIFSDAGRILRPLLVVENLNRIDKSKGENYTFQSLLDKGIIELIGTEEEEDCRVA 693

Query: 663  WGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIG 722
            W IK+L+   ED+   K++HCELDMSFLLGLSCG++PFANHDHARR L+QSQKHS+QAIG
Sbjct: 694  WSIKHLM---EDEGTTKYSHCELDMSFLLGLSCGLVPFANHDHARRALFQSQKHSNQAIG 750

Query: 723  FPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGY--GHNHILPRPELYNGQNAIVA 780
            F  TN + RVDTLSHQL YPQRPLFRTM +DCLG PGY   H  ILP+PE YNGQNAIVA
Sbjct: 751  FSPTNSNFRVDTLSHQLHYPQRPLFRTMTADCLGTPGYLSSHAGILPKPEFYNGQNAIVA 810

Query: 781  VNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQS 840
            VNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKE   KRR SDD +NFGK QS
Sbjct: 811  VNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKESSEKRRKSDDAINFGKTQS 870

Query: 841  KIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDG 900
            KIGRVDSLDDDGFP+IGANLQSGDIVIG+ A+SGADHSIKLKHTE+GMVQKVVLSSNDDG
Sbjct: 871  KIGRVDSLDDDGFPYIGANLQSGDIVIGRCAESGADHSIKLKHTEKGMVQKVVLSSNDDG 930

Query: 901  KNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSR 960
            KN++VVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSR
Sbjct: 931  KNYAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSR 990

Query: 961  QTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHR 1007
            QTPGQLLEAALGKGIAA       G  +YATPF+TPSVDAIT+QLHR
Sbjct: 991  QTPGQLLEAALGKGIAA------GGSLKYATPFSTPSVDAITDQLHR 1031


>gi|145338664|ref|NP_188437.2| DNA-directed RNA polymerase II subunit B [Arabidopsis thaliana]
 gi|332642524|gb|AEE76045.1| DNA-directed RNA polymerase II subunit B [Arabidopsis thaliana]
          Length = 1055

 Score = 1557 bits (4032), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 750/1071 (70%), Positives = 886/1071 (82%), Gaps = 29/1071 (2%)

Query: 114  ARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMV 173
             RLQNMTYS+R+KV  Q +V+ +  +  DKFKTG+++Y++KE+L  +  +I+IG IPVMV
Sbjct: 3    CRLQNMTYSARIKVNAQVEVFKKIVIKHDKFKTGQDEYVEKEILDVKKQDILIGSIPVMV 62

Query: 174  KSDLCWM--KGVE---KGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAY 228
            KS LC    KG E   KG+C FD GGYF+IKGAEKVF+AQEQ+C KRLW+SNS  WTV++
Sbjct: 63   KSVLCKTSEKGKENCKKGNCAFDQGGYFVIKGAEKVFIAQEQMCTKRLWISNS-PWTVSF 121

Query: 229  KSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLID 288
            +SE KRNR IVRL +  K ED K  EKVL+VYFLSTEIP+W+LFFALGVSSDKE ++LI 
Sbjct: 122  RSETKRNRFIVRLSENEKAEDYKIMEKVLTVYFLSTEIPVWLLFFALGVSSDKEAMDLIA 181

Query: 289  FTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLF 348
            F  +D SI N L ASIH+AD  C+ FR G NAL YV+  IK T FPP ES ++C+  YLF
Sbjct: 182  FDGDDASITNSLIASIHEADAVCEAFRCGNNALTYVEHQIKSTKFPPAESVDDCLRLYLF 241

Query: 349  PSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHAR 408
            P L G K+KARFLGYMVKCLL AY+G+RKC+NRD FRNKR+ELAGELLERE++VH+AHAR
Sbjct: 242  PCLQGLKKKARFLGYMVKCLLSAYAGKRKCENRDSFRNKRIELAGELLEREIRVHLAHAR 301

Query: 409  KRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLG 468
            ++M +A+Q+ L GD  ++PIE+YLDAS++TNGL+RAFSTGAWSHPF++ ER+SG+VANLG
Sbjct: 302  RKMTRAMQKQLSGDGDLKPIEHYLDASVITNGLNRAFSTGAWSHPFRKMERVSGVVANLG 361

Query: 469  RANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGL 528
            RANPLQTL+DLRRTRQQV YTGKVGDAR+PHPSHWG++CFLSTPDGENCGLVKN+ + GL
Sbjct: 362  RANPLQTLIDLRRTRQQVLYTGKVGDARHPHPSHWGRVCFLSTPDGENCGLVKNMSLLGL 421

Query: 529  VSTSILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRR 588
            VST  LE + E LF  GME+L +D S  L GK KV ++GDW+G+C DS SFV EL+ +RR
Sbjct: 422  VSTQGLESVVEMLFTCGMEELMNDTSTPLCGKHKVLLNGDWVGLCADSESFVGELKSRRR 481

Query: 589  RKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGII 648
            + ELP ++EIKRD+  +EVRIF DAGR+LRPLLVVEN+ K+K  +   Y F+ LLD GI+
Sbjct: 482  QSELPLEMEIKRDKDDNEVRIFTDAGRLLRPLLVVENLHKLKQDKPTQYPFKHLLDQGIL 541

Query: 649  ELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARR 708
            EL+G EEEEDC TAWGIK LLK+     P  +THCELD+SFLLG+SC I+PFANHDH +R
Sbjct: 542  ELIGIEEEEDCTTAWGIKQLLKE-----PKNYTHCELDLSFLLGVSCAIVPFANHDHGKR 596

Query: 709  VLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPR 768
            VLYQSQKH  QAIGF +TNP+IR DTLS QLFYPQ+PLF+T+ S+CL K           
Sbjct: 597  VLYQSQKHCQQAIGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASECLEK----------- 645

Query: 769  PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRS 828
              L+NGQNAIVAVNVHLGYNQEDS+VMN+ASLERGMFRSE IRSYKAEVD K+ + KR+ 
Sbjct: 646  EVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVDTKDSE-KRKK 704

Query: 829  SDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGM 888
             D++V FGK  SKIG+VDSL+DDGFPFIGAN+ +GDIVIG+  +SGADHSIKLKHTERG+
Sbjct: 705  MDELVQFGKTYSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCTESGADHSIKLKHTERGI 764

Query: 889  VQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVP 948
            VQKVVLSSND+GKNF+ VSLRQVRSPCLGDKFSSMHGQKGVLG+LE Q+NFPFTIQGIVP
Sbjct: 765  VQKVVLSSNDEGKNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVP 824

Query: 949  DIVINPHAFPSRQTPGQLLEAALGKGIAAL------GKGICSGLKRYATPFATPSVDAIT 1002
            DIVINPHAFPSRQTPGQLLEAAL KGIA             + L R+ATPF+TP V  IT
Sbjct: 825  DIVINPHAFPSRQTPGQLLEAALSKGIACPIQKKEGSSAAYTKLTRHATPFSTPGVTEIT 884

Query: 1003 EQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTR 1062
            EQLHRAGFS+WG ER+Y+GR+GEM+RSLIF+GPTFYQRL+HMSE+KVKFRNTGPVHPLTR
Sbjct: 885  EQLHRAGFSRWGNERVYNGRSGEMMRSLIFMGPTFYQRLVHMSENKVKFRNTGPVHPLTR 944

Query: 1063 QPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRV 1122
            QPVADRKRFGGI+FGEMERDCLIAHGA+ANLHERLFTLSDS QMHICRKCK  ANVI+R 
Sbjct: 945  QPVADRKRFGGIRFGEMERDCLIAHGASANLHERLFTLSDSSQMHICRKCKTYANVIERT 1004

Query: 1123 VGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTEFC 1173
               GRK+RGPYCR+C S D +V+  VPYGAKLLCQELFSMGITL FDT+ C
Sbjct: 1005 PSSGRKIRGPYCRVCASSDHVVRVYVPYGAKLLCQELFSMGITLNFDTKLC 1055


>gi|242041665|ref|XP_002468227.1| hypothetical protein SORBIDRAFT_01g042100 [Sorghum bicolor]
 gi|241922081|gb|EER95225.1| hypothetical protein SORBIDRAFT_01g042100 [Sorghum bicolor]
          Length = 1228

 Score = 1556 bits (4029), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 741/1162 (63%), Positives = 920/1162 (79%), Gaps = 17/1162 (1%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSK 75
            DL  E L+ FC++A+ SFF+E GL+SHQINSYN+F+ +GLQ+ FDS GE IVEPGYDPSK
Sbjct: 80   DLSVESLEKFCKEASRSFFDEVGLISHQINSYNDFVSHGLQELFDSLGEVIVEPGYDPSK 139

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT 135
            KG G W++A ++FG+V L+KP F+ G      D  P HARLQNMTY+SR+ V+V  QVY+
Sbjct: 140  KGSGGWKHAIIKFGRVKLEKPVFWTGKDEGSVDFKPWHARLQNMTYASRLIVEVNIQVYS 199

Query: 136  QKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCDFDHGGY 195
             ++  SDK KTG + ++QK    +ET  I IG +PVMVKS+LC +  +++ +C FD GGY
Sbjct: 200  LEK--SDKSKTGNDGFVQKRDFMNETHWIFIGLLPVMVKSNLCLLHSLKESECLFDAGGY 257

Query: 196  FIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEK 255
            F++KG EKVF+AQE  CLKRLW+ +   W +++ SE KR R+ ++LV+ ++ ED   G K
Sbjct: 258  FLVKGMEKVFIAQELRCLKRLWIIDRPCWMISFMSEMKRRRIYIKLVESTRSEDF-SGSK 316

Query: 256  VLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFR 315
            ++S+ FL   +P+W+LFFALG+SSDKE  ++ID    D S++N + A+I ++D  C+ FR
Sbjct: 317  IISISFLYATMPVWLLFFALGISSDKEAFDVIDMQDCDASVINTISATIKESDELCEGFR 376

Query: 316  KGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGR 375
            K   A +YVD+L+K + FPP ES ++ +  +LFP + G + KA FLGYMVKCLL A++G+
Sbjct: 377  KSDKARQYVDELVKSSRFPPAESFDDYIARFLFPDISGNRNKALFLGYMVKCLLMAFTGK 436

Query: 376  RKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDAS 435
            RKCDN+DDFRNKRL+L GELL REL+ H+  A KRM KA+QRDL  DR ++ +E Y+DAS
Sbjct: 437  RKCDNKDDFRNKRLDLPGELLGRELRAHLRLAEKRMVKAIQRDLNSDRELQDLERYIDAS 496

Query: 436  ILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDA 495
            I+TNGLSRAFSTG+W HP+KR ER SGIVA L R NPLQ + DLR+TRQ+V Y GK GDA
Sbjct: 497  IVTNGLSRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQMMSDLRKTRQRVAYAGKAGDA 556

Query: 496  RYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFNSGMEKLADDASY 555
            RYP+PS+WGK+CF+STPDGENCGLVKNL VT +VS+ +++P+ E   + GM KL D  + 
Sbjct: 557  RYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSRVVQPLIESFISCGMSKLNDIPTE 616

Query: 556  SLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGR 615
             +    K+F++G+W+G CKDS SFV  LR  RR   +  QVEIKRD+   EVR+F DAGR
Sbjct: 617  HIQRMDKIFLNGNWVGSCKDSASFVFRLRCMRRSSLIDPQVEIKRDKHHKEVRVFSDAGR 676

Query: 616  ILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDK 675
            ILRPLLVVEN+ KI+  +G++++FQ L+   IIE +G EEEED   AWGI++L    E +
Sbjct: 677  ILRPLLVVENLKKIRKPKGRSFSFQELMQQEIIEFIGVEEEEDIQCAWGIRHLF---ESE 733

Query: 676  KPI-KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDT 734
              I  +THCELD SFLLGLSCGIIPFANH+ ARRVLYQS+KHS QAIG+ TTNP IRVDT
Sbjct: 734  GAISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDT 793

Query: 735  LSHQLFYPQRPLFRTMISDCLGKPGY---GHNHILPRPELYNGQNAIVAVNVHLGYNQED 791
            LSHQL+YPQRPLF+T+I+DCLG+  Y   G      RPE +NGQNAIVAVNVH G+NQED
Sbjct: 794  LSHQLYYPQRPLFKTVIADCLGRSDYTTFGRKDDFMRPEYFNGQNAIVAVNVHQGFNQED 853

Query: 792  SLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDD 851
            SLVMNRASLERGMFR+EH+RSYKA+V+NK+   KR    + ++FGK +SK GRVD+LDDD
Sbjct: 854  SLVMNRASLERGMFRTEHLRSYKADVENKD-GTKRLKLKEKIDFGKTESKRGRVDNLDDD 912

Query: 852  GFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQV 911
            G P+IGA+LQ+ DIVIGK ++SG DHSIKLKHTE+GMVQKV+LS+ND+GKNF+VV+LRQV
Sbjct: 913  GLPYIGASLQTNDIVIGKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQV 972

Query: 912  RSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAAL 971
            R+PCLGDKFSSMHGQKGV+GFLESQENFPFT +GIVPDIVINPHAFP+RQTPGQLLEAAL
Sbjct: 973  RTPCLGDKFSSMHGQKGVVGFLESQENFPFTHKGIVPDIVINPHAFPTRQTPGQLLEAAL 1032

Query: 972  GKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLI 1031
            GKGIA      C G  RYATPF T SVD I EQLHRAG+S+WGTE + +GRTGE ++SLI
Sbjct: 1033 GKGIA------CKGTMRYATPFTTASVDVIAEQLHRAGYSRWGTENVLNGRTGERMQSLI 1086

Query: 1032 FIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAA 1091
            F+GPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGG+KFGEMERDCL+AHG+AA
Sbjct: 1087 FMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGSAA 1146

Query: 1092 NLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYG 1151
            NLHERLF LSD  QMHIC+ C+ VANV+ R V GG+K+RGPYC  C S ++IV+ NVPYG
Sbjct: 1147 NLHERLFMLSDFSQMHICQTCERVANVVMRSVSGGKKIRGPYCGFCKSSENIVRINVPYG 1206

Query: 1152 AKLLCQELFSMGITLKFDTEFC 1173
            AKLL QELFSMGI LKFDTE C
Sbjct: 1207 AKLLYQELFSMGICLKFDTEVC 1228


>gi|298566250|ref|NP_001177299.1| required to maintain repression7 [Zea mays]
 gi|283443696|gb|ADB19857.1| required to maintain repression 7/RNA polymerase D second largest
            subunit [Zea mays]
 gi|297185477|gb|ADI24118.1| RPD2/E2a [Zea mays]
 gi|414585188|tpg|DAA35759.1| TPA: putative DNA-directed RNA polymerase subunit family protein [Zea
            mays]
          Length = 1229

 Score = 1553 bits (4022), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 732/1162 (62%), Positives = 923/1162 (79%), Gaps = 17/1162 (1%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSK 75
            D+  E L+ FC++A+ SFF+E GL+SHQINSYNEF+ +GLQ+ FDS GE IVEPGYDPSK
Sbjct: 81   DMSVESLEKFCKEASRSFFDEVGLISHQINSYNEFVSHGLQELFDSLGEVIVEPGYDPSK 140

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT 135
            KG G W++A ++FG+V L+KP F+ G      D  P HARLQNMTY+SR+ V+V  QVY+
Sbjct: 141  KGSGGWKHAIIKFGRVKLEKPVFWTGKDEGSVDFKPWHARLQNMTYASRLIVEVTIQVYS 200

Query: 136  QKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCDFDHGGY 195
             ++  SDK KTG + ++QK    +ET  I IG +PVMVKS+LC +  + + +C FD GGY
Sbjct: 201  LEK--SDKSKTGNDGFVQKRNFMNETHWIFIGLLPVMVKSNLCLLHSLNESECLFDAGGY 258

Query: 196  FIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEK 255
            F++KG EKVF+AQEQ CL+RLW+S+   WT+++ SE KR R+ ++LV+ ++ ED     K
Sbjct: 259  FLVKGMEKVFIAQEQRCLRRLWISDRPCWTISFMSEIKRRRIYIKLVESTRSEDFSES-K 317

Query: 256  VLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFR 315
            ++++ FL   +P+W+LFFALG+SSDKE+ ++ID    D S++N + A+I ++D  C++FR
Sbjct: 318  IITISFLYATMPVWLLFFALGISSDKEVFDMIDMQDCDASVINTISATIKESDKLCEDFR 377

Query: 316  KGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGR 375
            K   A +YVD+L+K + FPP ES ++ +  +LFP + G + KA FLGYMVKCLL A++G+
Sbjct: 378  KSDKARQYVDELVKSSRFPPAESFDDYIARFLFPDISGNRNKALFLGYMVKCLLMAFTGK 437

Query: 376  RKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDAS 435
            RKCDN+DDFRNKRL+L GELL REL+  +  A KRM KA+QRDL  DR ++ +E Y+DAS
Sbjct: 438  RKCDNKDDFRNKRLDLPGELLGRELRAQLRLAEKRMVKAIQRDLNSDRELQDLERYIDAS 497

Query: 436  ILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDA 495
            I+TNGL+RAFSTG+W HP+KR ER SGIVA L R NPLQ + DLR+TRQ+V Y GK GDA
Sbjct: 498  IVTNGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQMMSDLRKTRQRVAYAGKAGDA 557

Query: 496  RYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFNSGMEKLADDASY 555
            RYP+PS+WGK+CF+STPDGENCGLVKNL VT +VS+ +++P+ E   + GM KL D  + 
Sbjct: 558  RYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSRVMQPLIESFISCGMSKLNDIPTE 617

Query: 556  SLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGR 615
             +    K+F++G+W+G C++S SFV  LR  RR   +  QVEIKRD+  +EVR+F DAGR
Sbjct: 618  HIQRMDKIFLNGNWVGSCENSASFVFRLRCMRRSSLIDPQVEIKRDKHHNEVRVFTDAGR 677

Query: 616  ILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDK 675
            ILRPLLVVEN+ KI+  +G++++F  L+   IIE +G EEEED   AWGI++L    E +
Sbjct: 678  ILRPLLVVENLNKIRKPKGRSFSFHELMQQEIIEFIGVEEEEDIQCAWGIRHLF---ESE 734

Query: 676  KPI-KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDT 734
              I  +THCELD SFLLGLSCGIIPFANH+ ARRVLYQS+KHS QAIG+ TTNP IRVDT
Sbjct: 735  GAISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDT 794

Query: 735  LSHQLFYPQRPLFRTMISDCLGKPGY---GHNHILPRPELYNGQNAIVAVNVHLGYNQED 791
            LSHQL+YPQRPLF+T+I+DCLG+  Y   G  +   RPE +NGQNAIVAVNVH G+NQED
Sbjct: 795  LSHQLYYPQRPLFKTVIADCLGRSDYASFGRKNDFARPEYFNGQNAIVAVNVHQGFNQED 854

Query: 792  SLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDD 851
            SLVMNRASLERGMFR+EH+RSYKA+V+NK+   KR    + ++FGK +SK GRVD+LDDD
Sbjct: 855  SLVMNRASLERGMFRTEHLRSYKADVENKD-GTKRLKLKEKIDFGKTESKRGRVDNLDDD 913

Query: 852  GFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQV 911
            G P++GA+LQ+ DIVIGK ++SG DHSIKLKHTE+GMVQKV+LS+ND+GKNF+VV+LRQV
Sbjct: 914  GLPYVGASLQTNDIVIGKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQV 973

Query: 912  RSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAAL 971
            R+PCLGDKFSSMHGQKGV+GFLESQENFPFT +GIVPDIVINPHAFP+RQTPGQLLEAAL
Sbjct: 974  RTPCLGDKFSSMHGQKGVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQLLEAAL 1033

Query: 972  GKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLI 1031
            GKGIA      C G  RYATPF T SVD I EQLHRAG+S+WG+E + +GRTGE V+SL+
Sbjct: 1034 GKGIA------CKGTMRYATPFTTASVDVIAEQLHRAGYSRWGSENVLNGRTGERVQSLV 1087

Query: 1032 FIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAA 1091
            F+GPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGG+KFGEMERDCL+AHG+AA
Sbjct: 1088 FMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGSAA 1147

Query: 1092 NLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYG 1151
            NLHERLF LSD  QMHIC+ C+ VANV+ R V GG+K+RGPYC  C S ++IV+ NVPYG
Sbjct: 1148 NLHERLFLLSDFSQMHICQTCERVANVVMRSVPGGKKIRGPYCGFCKSSENIVRINVPYG 1207

Query: 1152 AKLLCQELFSMGITLKFDTEFC 1173
            AKLL QELFSMGI LKF+T+ C
Sbjct: 1208 AKLLYQELFSMGICLKFETQVC 1229


>gi|242074526|ref|XP_002447199.1| hypothetical protein SORBIDRAFT_06g030300 [Sorghum bicolor]
 gi|241938382|gb|EES11527.1| hypothetical protein SORBIDRAFT_06g030300 [Sorghum bicolor]
          Length = 1239

 Score = 1551 bits (4017), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 738/1162 (63%), Positives = 917/1162 (78%), Gaps = 17/1162 (1%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSK 75
            D+  E L+ FC++A+ SFF+E GL+SHQINSYNEF+ +GLQ+ FDS GE IVEPGYDPSK
Sbjct: 91   DMSVESLEKFCKEASRSFFDEVGLISHQINSYNEFVSHGLQELFDSLGEVIVEPGYDPSK 150

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT 135
            KG G W++A ++FG+V L+KP F+ G      D  P HARLQNMTY+SR+KV+V  QVY+
Sbjct: 151  KGSGGWKHAIIKFGRVKLEKPVFWTGKDEGSVDFKPWHARLQNMTYASRLKVEVTIQVYS 210

Query: 136  QKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCDFDHGGY 195
             ++  SDK KTG E ++QK    +ET  I IG +PVMVKS+LC +  +++ +C FD GGY
Sbjct: 211  LEK--SDKSKTGNEGFVQKRNFMNETHWIFIGLLPVMVKSNLCLLHSLKESECLFDAGGY 268

Query: 196  FIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEK 255
            F++KG EKVF+AQEQ CLKRLWVS+   W +++  E KR R+ ++LV+ ++ ED  G  K
Sbjct: 269  FLVKGMEKVFIAQEQRCLKRLWVSDRPFWMISFMHEIKRRRIYIKLVESTRSEDFSGS-K 327

Query: 256  VLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFR 315
            V+S+ FL   +P+W+LFFALG+SSDKE  ++ID    D S++N + A+I ++D  C  FR
Sbjct: 328  VISISFLYATMPVWLLFFALGISSDKEAFDVIDMQDCDASVINTISATIKESDELCKGFR 387

Query: 316  KGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGR 375
            K   A +YVD+L+K + FPP ES ++ +  +LFP ++G + KA FLGYMVKCLL A++G+
Sbjct: 388  KSDKARQYVDELVKSSRFPPAESFDDYVARFLFPDINGNRNKAFFLGYMVKCLLMAFTGK 447

Query: 376  RKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDAS 435
            RKCDN+DDFRNKRL+L GELL REL+  +    +RM KA+QRDL  DR ++ +E Y+DAS
Sbjct: 448  RKCDNKDDFRNKRLDLPGELLGRELRAQLRLLERRMVKAIQRDLNNDRELQDLERYIDAS 507

Query: 436  ILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDA 495
            I+TNGL+RAFSTG+W HP+KR ER SGIVA L R NPLQ + DLR+TRQ+V Y GK GDA
Sbjct: 508  IVTNGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQMMSDLRKTRQRVAYAGKAGDA 567

Query: 496  RYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFNSGMEKLADDASY 555
            RYP+PS+WGK+CFLSTPDGENCGLVKNL VT +VS+ + +P+ E   + GM KL D  + 
Sbjct: 568  RYPNPSYWGKLCFLSTPDGENCGLVKNLAVTAIVSSRVGQPLIESFISCGMSKLNDIPTE 627

Query: 556  SLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGR 615
             +    K+F++G+W+G CKDS SFV  LR  RR   +  QVEIKRD+   EVR+F DAGR
Sbjct: 628  HIQRMDKIFLNGNWVGSCKDSASFVFRLRCMRRSSMIDPQVEIKRDKHHKEVRVFSDAGR 687

Query: 616  ILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDK 675
            ILRPLLVVEN+ KI+  +G++++FQ L+   IIE +G EEEED   AWGI++L    E +
Sbjct: 688  ILRPLLVVENLNKIRKPKGRSFSFQELMQQEIIEFIGVEEEEDIQCAWGIRHLF---ESE 744

Query: 676  KPI-KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDT 734
              I  +THCELD SFL+GLSCGIIPFANH+ ARRVLYQS+KHS QAIG+ TTNP IRVDT
Sbjct: 745  GAISSYTHCELDPSFLMGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDT 804

Query: 735  LSHQLFYPQRPLFRTMISDCLGKPGY---GHNHILPRPELYNGQNAIVAVNVHLGYNQED 791
            LSHQL+YPQRPLF+T+I+DCLG+  Y   G      RPE +NGQNAIVAVNVH G+NQED
Sbjct: 805  LSHQLYYPQRPLFKTVIADCLGRSDYTAFGRKDDYTRPEYFNGQNAIVAVNVHQGFNQED 864

Query: 792  SLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDD 851
            SLVMNRASLERGMFR+EH+RSYK +V+NK+   KR    + ++FGK +SK GRVD+LDDD
Sbjct: 865  SLVMNRASLERGMFRTEHLRSYKTDVENKD-GTKRLKLKEKIDFGKTESKRGRVDNLDDD 923

Query: 852  GFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQV 911
            G P+IGA+LQ+ DIVIGK ++SG DHSIKLKHTE+GMVQKV+LS+ND+GKNF+VV+LRQV
Sbjct: 924  GLPYIGASLQTNDIVIGKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQV 983

Query: 912  RSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAAL 971
            R+PCLGDKFSSMHGQKGV+GFLESQENFPFT +GIVPDIVINPHAFP+RQTPGQLLEAAL
Sbjct: 984  RTPCLGDKFSSMHGQKGVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQLLEAAL 1043

Query: 972  GKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLI 1031
            GKGIA      C G  RYATPF T SVD I EQLH+AG+S+WG E + +GRTGE ++SL+
Sbjct: 1044 GKGIA------CKGTMRYATPFTTASVDVIAEQLHKAGYSRWGAENVLNGRTGERMQSLV 1097

Query: 1032 FIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAA 1091
            F+GPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGG+KFGEMERDCL+AHG+AA
Sbjct: 1098 FMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGSAA 1157

Query: 1092 NLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYG 1151
            NLHERLF LSD  QMHIC+ C+ VANV+ R V GG+K+RGPYC  C S ++IV+ NVPYG
Sbjct: 1158 NLHERLFMLSDFSQMHICQTCERVANVVMRSVPGGKKIRGPYCGFCKSSENIVRINVPYG 1217

Query: 1152 AKLLCQELFSMGITLKFDTEFC 1173
            AKLL QELFSMGI LKFDTE C
Sbjct: 1218 AKLLYQELFSMGICLKFDTEVC 1239


>gi|283443700|gb|ADB19859.1| mutant required to maintain repression 7-2/ RNA polymerase D second
            largest subunit 2-2 [Zea mays]
          Length = 1229

 Score = 1550 bits (4014), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 731/1162 (62%), Positives = 922/1162 (79%), Gaps = 17/1162 (1%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSK 75
            D+  E L+ FC++A+ SFF+E GL+SHQINSYNEF+ +GLQ+ FDS GE IVEPGYDPSK
Sbjct: 81   DMSVESLEKFCKEASRSFFDEVGLISHQINSYNEFVSHGLQELFDSLGEVIVEPGYDPSK 140

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT 135
            KG G W++A ++FG+V L+KP F+ G      D  P HARLQNMTY+SR+ V+V  QVY+
Sbjct: 141  KGSGGWKHAIIKFGRVKLEKPVFWTGKDEGSVDFKPWHARLQNMTYASRLIVEVTIQVYS 200

Query: 136  QKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCDFDHGGY 195
             ++  SDK KTG + ++QK    +ET  I IG +PVMVKS+LC +  + + +C FD GGY
Sbjct: 201  LEK--SDKSKTGNDGFVQKRNFMNETHWIFIGLLPVMVKSNLCLLHSLNESECLFDAGGY 258

Query: 196  FIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEK 255
            F++KG EKVF+AQEQ CL+RLW+S+   WT+++ SE KR R+ ++LV+ ++ ED     K
Sbjct: 259  FLVKGMEKVFIAQEQRCLRRLWISDRPCWTISFMSEIKRRRIYIKLVESTRSEDFSES-K 317

Query: 256  VLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFR 315
            ++++ FL   +P+W+LFFALG+SSDKE+ ++ID    D S++N + A+I ++D  C++FR
Sbjct: 318  IITISFLYATMPVWLLFFALGISSDKEVFDMIDMQDCDASVINTISATIKESDKLCEDFR 377

Query: 316  KGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGR 375
            K   A +YVD+L+K + FPP ES ++ +  +LFP + G + KA FLGYMVKCLL A++G+
Sbjct: 378  KSDKARQYVDELVKSSRFPPAESFDDYIARFLFPDISGNRNKALFLGYMVKCLLMAFTGK 437

Query: 376  RKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDAS 435
            RKCDN+DDFRNKRL+L GELL REL+  +  A KRM KA+QRDL  DR ++ +E Y+DAS
Sbjct: 438  RKCDNKDDFRNKRLDLPGELLGRELRAQLRLAEKRMVKAIQRDLNSDRELQDLERYIDAS 497

Query: 436  ILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDA 495
            I+TNGL+RAFSTG+W HP+KR ER SGIVA L R NPLQ + DLR+TRQ+V Y GK GDA
Sbjct: 498  IVTNGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQMMSDLRKTRQRVAYAGKAGDA 557

Query: 496  RYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFNSGMEKLADDASY 555
            RYP+PS+W K+CF+STPDGENCGLVKNL VT +VS+ +++P+ E   + GM KL D  + 
Sbjct: 558  RYPNPSYWEKLCFMSTPDGENCGLVKNLAVTAIVSSRVMQPLIESFISCGMSKLNDIPTE 617

Query: 556  SLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGR 615
             +    K+F++G+W+G C++S SFV  LR  RR   +  QVEIKRD+  +EVR+F DAGR
Sbjct: 618  HIQRMDKIFLNGNWVGSCENSASFVFRLRCMRRSSLIDPQVEIKRDKHHNEVRVFTDAGR 677

Query: 616  ILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDK 675
            ILRPLLVVEN+ KI+  +G++++F  L+   IIE +G EEEED   AWGI++L    E +
Sbjct: 678  ILRPLLVVENLNKIRKPKGRSFSFHELMQQEIIEFIGVEEEEDIQCAWGIRHLF---ESE 734

Query: 676  KPI-KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDT 734
              I  +THCELD SFLLGLSCGIIPFANH+ ARRVLYQS+KHS QAIG+ TTNP IRVDT
Sbjct: 735  GAISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDT 794

Query: 735  LSHQLFYPQRPLFRTMISDCLGKPGY---GHNHILPRPELYNGQNAIVAVNVHLGYNQED 791
            LSHQL+YPQRPLF+T+I+DCLG+  Y   G  +   RPE +NGQNAIVAVNVH G+NQED
Sbjct: 795  LSHQLYYPQRPLFKTVIADCLGRSDYASFGRKNDFARPEYFNGQNAIVAVNVHQGFNQED 854

Query: 792  SLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDD 851
            SLVMNRASLERGMFR+EH+RSYKA+V+NK+   KR    + ++FGK +SK GRVD+LDDD
Sbjct: 855  SLVMNRASLERGMFRTEHLRSYKADVENKD-GTKRLKLKEKIDFGKTESKRGRVDNLDDD 913

Query: 852  GFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQV 911
            G P++GA+LQ+ DIVIGK ++SG DHSIKLKHTE+GMVQKV+LS+ND+GKNF+VV+LRQV
Sbjct: 914  GLPYVGASLQTNDIVIGKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQV 973

Query: 912  RSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAAL 971
            R+PCLGDKFSSMHGQKGV+GFLESQENFPFT +GIVPDIVINPHAFP+RQTPGQLLEAAL
Sbjct: 974  RTPCLGDKFSSMHGQKGVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQLLEAAL 1033

Query: 972  GKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLI 1031
            GKGIA      C G  RYATPF T SVD I EQLHRAG+S+WG+E + +GRTGE V+SL+
Sbjct: 1034 GKGIA------CKGTMRYATPFTTASVDVIAEQLHRAGYSRWGSENVLNGRTGERVQSLV 1087

Query: 1032 FIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAA 1091
            F+GPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGG+KFGEMERDCL+AHG+AA
Sbjct: 1088 FMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGSAA 1147

Query: 1092 NLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYG 1151
            NLHERLF LSD  QMHIC+ C+ VANV+ R V GG+K+RGPYC  C S ++IV+ NVPYG
Sbjct: 1148 NLHERLFLLSDFSQMHICQTCERVANVVMRSVPGGKKIRGPYCGFCKSSENIVRINVPYG 1207

Query: 1152 AKLLCQELFSMGITLKFDTEFC 1173
            AKLL QELFSMGI LKF+T+ C
Sbjct: 1208 AKLLYQELFSMGICLKFETQVC 1229


>gi|413919691|gb|AFW59623.1| putative DNA-directed RNA polymerase subunit family protein [Zea
            mays]
          Length = 2163

 Score = 1543 bits (3996), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 731/1174 (62%), Positives = 923/1174 (78%), Gaps = 17/1174 (1%)

Query: 3    SDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSF 62
            S    F++P    ++  E L+ FC++A+ SFF+E GL+SHQINSYNEF+ +GLQ+ FDS 
Sbjct: 1004 SSSEPFSNPP--INMSVESLEKFCKEASRSFFDEVGLISHQINSYNEFVSHGLQELFDSL 1061

Query: 63   GETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYS 122
            GE IVEPGYDPSKKG G W++A ++FG+V L+KP F+ G      D  P HARLQNMTY+
Sbjct: 1062 GEVIVEPGYDPSKKGSGSWKHAIIKFGRVKLEKPVFWTGKDEVSVDFKPWHARLQNMTYA 1121

Query: 123  SRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG 182
            SR++V+V  QVY+ ++  SDK KTG + ++QK    +ET  I IG +PVMVKS+LC +  
Sbjct: 1122 SRLRVEVTIQVYSLEK--SDKSKTGNDGFVQKRNFMNETHWIFIGLLPVMVKSNLCLLHS 1179

Query: 183  VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLV 242
            +++ +C FD GGYF++KG EKVF+AQE  CL+RLW+S+   WT+++ SE KR R+ ++LV
Sbjct: 1180 LKESECLFDAGGYFLVKGMEKVFIAQELRCLRRLWISDRPCWTISFMSEMKRRRIYIKLV 1239

Query: 243  DMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFA 302
            + ++ ED  G  K++S+ FL   +P+W+LFFALG+SSDKE  ++ID    D S++N + A
Sbjct: 1240 ESTRSEDFSG-SKIISISFLYATMPVWLLFFALGISSDKEAFDVIDMQDCDASVINTISA 1298

Query: 303  SIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLG 362
            +I ++D  C  FRK   A +YVD+L+K + FPP ES ++ +  +LFP + G + KA FLG
Sbjct: 1299 TIKESDELCGGFRKSDKARQYVDELVKSSKFPPVESFDDYIAKFLFPGISGNRNKALFLG 1358

Query: 363  YMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGD 422
            YMVKCLL A++G+RKCDN+DDFRNKRL+L GELL REL+ H+  A +RM KA+QRDL  D
Sbjct: 1359 YMVKCLLMAFTGKRKCDNKDDFRNKRLDLPGELLGRELRAHLRQAERRMVKAIQRDLNSD 1418

Query: 423  RTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
            R ++ +E Y+DASI+TNGL+RAFSTG+W HP+KR ER SGIVA L R NPLQ + DLR+T
Sbjct: 1419 RELQDLERYIDASIVTNGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQMMSDLRKT 1478

Query: 483  RQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLF 542
            RQ+V Y GK GDARYP+PS+WGK+CF+STPDGENCGLVKNL VT +VS+ +++P+ E   
Sbjct: 1479 RQRVAYAGKAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTSIVSSKVVQPLIESFI 1538

Query: 543  NSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
            + GM KL D  +  +    K+F++G+W+G C DS SFV  LR  RR   +  QVEIKRD+
Sbjct: 1539 SCGMNKLNDIPTEHIQRMDKIFLNGNWLGSCSDSASFVFRLRCMRRSSLIDPQVEIKRDK 1598

Query: 603  LQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTA 662
               EVR+F DAGRILRPLLVVEN+ KI+  +G++++FQ L+   IIE +G EEEED   A
Sbjct: 1599 HYKEVRLFSDAGRILRPLLVVENLNKIRKPKGRSFSFQELMQQEIIEFIGVEEEEDIQCA 1658

Query: 663  WGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIG 722
            WGI++L +   +     +THCELD SF+LGLSCGIIPFANH+ ARRVLYQS+KHS QAIG
Sbjct: 1659 WGIRHLFE--SEGAISSYTHCELDPSFILGLSCGIIPFANHNFARRVLYQSEKHSQQAIG 1716

Query: 723  FPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPG---YGHNHILPRPELYNGQNAIV 779
            + T+NP IRVDTLSHQL+YPQRPLF+T+I+DCLG+     +G      RPE +NGQNAIV
Sbjct: 1717 YSTSNPRIRVDTLSHQLYYPQRPLFKTVIADCLGRSDCTTFGRKDDFTRPEYFNGQNAIV 1776

Query: 780  AVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQ 839
            AVNVH G+NQEDSLVMNRASLERGMFR+EH+RSYKA+V+NK+   KR    + ++FGK +
Sbjct: 1777 AVNVHQGFNQEDSLVMNRASLERGMFRTEHLRSYKADVENKD-GTKRLKLKEKIDFGKTE 1835

Query: 840  SKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDD 899
            SK GRVD+LDDDG P+IGA+LQ+ DIVIGK ++SG DHSIKLKHTE+GMVQKV+LS+ND+
Sbjct: 1836 SKRGRVDNLDDDGLPYIGASLQTNDIVIGKVSESGEDHSIKLKHTEKGMVQKVLLSANDE 1895

Query: 900  GKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPS 959
            GKNF+VV+LRQVR+PCLGDKFSSMHGQKGV+GFLESQENFPFT  GIVPDIVINPHAFP+
Sbjct: 1896 GKNFAVVTLRQVRTPCLGDKFSSMHGQKGVVGFLESQENFPFTHDGIVPDIVINPHAFPT 1955

Query: 960  RQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLY 1019
            RQTPGQLLEAALGKGIA      C G  RYATPF T SVD I EQLH+AG+S+WG E + 
Sbjct: 1956 RQTPGQLLEAALGKGIA------CKGTMRYATPFTTASVDVIAEQLHKAGYSRWGAENVL 2009

Query: 1020 DGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEM 1079
            +GRTGE ++SL+F+GPTFYQRLIHMSEDKVK+RNTGPVHPLTRQPVADRKRFGG+KFGEM
Sbjct: 2010 NGRTGERMKSLVFMGPTFYQRLIHMSEDKVKYRNTGPVHPLTRQPVADRKRFGGVKFGEM 2069

Query: 1080 ERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDS 1139
            ERDCL+AHG+AANLHERLF LSD  QMHIC+ C+ VANV+ R V GG+K+RGPYC  C S
Sbjct: 2070 ERDCLLAHGSAANLHERLFMLSDFSQMHICQTCERVANVVMRSVPGGKKIRGPYCGFCKS 2129

Query: 1140 GDDIVKANVPYGAKLLCQELFSMGITLKFDTEFC 1173
             ++IV+ NVPYGAKLL QELFSMGI LKF+TE C
Sbjct: 2130 SENIVRINVPYGAKLLYQELFSMGICLKFETEVC 2163


>gi|66356143|gb|AAY45706.1| RNA polymerase IV second largest subunit [Zea mays]
          Length = 1170

 Score = 1542 bits (3992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 728/1162 (62%), Positives = 918/1162 (79%), Gaps = 17/1162 (1%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSK 75
            D+  E L  FC++A+ SFF+E GL+SHQINSYNEF+ +GLQ+ FDS GE IVEPGYDPSK
Sbjct: 22   DMSVESLGKFCKEASRSFFDEVGLISHQINSYNEFVSHGLQELFDSLGEVIVEPGYDPSK 81

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT 135
            KG G W++A ++FG+V L+KP F+ G      D  P HARLQNMTY+SR+ V+V  QVY+
Sbjct: 82   KGSGGWKHAIIKFGRVKLEKPVFWTGKDEGSVDFKPWHARLQNMTYASRLIVEVTIQVYS 141

Query: 136  QKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCDFDHGGY 195
             ++  SDK KTG + ++QK    +ET  I IG +PVMVKS+LC +  + + +C FD GGY
Sbjct: 142  LEK--SDKSKTGNDGFVQKRNFMNETHWIFIGLLPVMVKSNLCLLHSLNESECLFDAGGY 199

Query: 196  FIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEK 255
            F++KG EKVF+AQEQ CL+RLW+S+   WT+++ SE KR R+ ++LV+ ++ ED     K
Sbjct: 200  FLVKGMEKVFIAQEQRCLRRLWISDRPCWTISFMSEIKRRRIYIKLVESTRSEDF-SESK 258

Query: 256  VLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFR 315
            ++++ FL   +P+W+  FALG+SSDKE+ ++I     D S++N + A+I ++D  C++FR
Sbjct: 259  IITISFLYATMPVWLXXFALGISSDKEVFDMIXMQDCDASVINTISATIKESDKLCEDFR 318

Query: 316  KGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGR 375
            K   A +YVD+L+K + FPP ES ++ +  +LFP + G + KA FLGYMVKCLL A++G+
Sbjct: 319  KSDKARQYVDELVKSSRFPPAESFDDYIARFLFPDISGNRNKALFLGYMVKCLLMAFTGK 378

Query: 376  RKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDAS 435
            RKCDN+DDFRNKRL+L GELL REL+  +  A KRM KA+QRDL  DR ++ +E Y+DAS
Sbjct: 379  RKCDNKDDFRNKRLDLPGELLGRELRAQLRLAEKRMVKAIQRDLNSDRELQDLERYIDAS 438

Query: 436  ILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDA 495
            I+TNGL+RAFSTG+W HP+KR ER SGIVA L R NPLQ + DLR+TRQ+V Y GK GDA
Sbjct: 439  IVTNGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQMMSDLRKTRQRVAYAGKAGDA 498

Query: 496  RYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFNSGMEKLADDASY 555
            RYP+PS+WGK+CF+STPDGENCGLVKNL VT +VS+ +++P+ E   + GM KL D  + 
Sbjct: 499  RYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSRVMQPLIESFISCGMSKLNDIPTE 558

Query: 556  SLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGR 615
             +    K+F++G+W+G C++S SFV  LR  RR   +  QVEIKRD+  +EVR+F DAGR
Sbjct: 559  HIQRMDKIFLNGNWVGSCENSASFVFRLRCMRRSSLIDPQVEIKRDKHHNEVRVFTDAGR 618

Query: 616  ILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDK 675
            ILRPLLVVEN+ KI+  +G++++F  L+   IIE +G EEEED   AWGI++L    E +
Sbjct: 619  ILRPLLVVENLNKIRKPKGRSFSFHELMQQEIIEFIGVEEEEDIQCAWGIRHLF---ESE 675

Query: 676  KPI-KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDT 734
              I  +THCELD SFLLGLSCGIIPFANH+ ARRVLYQS+KHS QAIG+ TTNP IRVDT
Sbjct: 676  GAISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDT 735

Query: 735  LSHQLFYPQRPLFRTMISDCLGKPGY---GHNHILPRPELYNGQNAIVAVNVHLGYNQED 791
            LSHQL+YPQRPLF+T+I+DCLG+  Y   G  +   RPE +NGQNAIVAVNVH G+NQED
Sbjct: 736  LSHQLYYPQRPLFKTVIADCLGRSDYASFGRKNDFARPEYFNGQNAIVAVNVHQGFNQED 795

Query: 792  SLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDD 851
            SLVMNRASLERGMFR+EH+RSYKA+V+NK+   KR    + ++FGK +SK GR D+LDDD
Sbjct: 796  SLVMNRASLERGMFRTEHLRSYKADVENKD-GTKRLKLKEKIDFGKTESKRGRXDNLDDD 854

Query: 852  GFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQV 911
            G P++GA+LQ+ DIVIGK ++SG DHSIKLKHTE+GMVQKV+LS+ND+GKNF+VV+LRQV
Sbjct: 855  GLPYVGASLQTNDIVIGKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQV 914

Query: 912  RSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAAL 971
            R+PCLGDKFSSMHGQKGV+GFLESQENFPFT +GIVPDIVINPHAFP+RQTPGQLLEAAL
Sbjct: 915  RTPCLGDKFSSMHGQKGVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQLLEAAL 974

Query: 972  GKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLI 1031
            GKGIA      C G  RYATPF T SVD I EQLHRAG+S+WG+E + +GRTGE V+SL+
Sbjct: 975  GKGIA------CKGTMRYATPFTTASVDVIAEQLHRAGYSRWGSENVLNGRTGERVQSLV 1028

Query: 1032 FIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAA 1091
            F+GPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGG+KFGEMERDCL+AHG+AA
Sbjct: 1029 FMGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGSAA 1088

Query: 1092 NLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYG 1151
            NLHERLF LSD  QMHIC+ C+ VANV+ R V GG+K+RGPYC  C S ++IV+ NVPYG
Sbjct: 1089 NLHERLFLLSDFSQMHICQTCERVANVVMRSVPGGKKIRGPYCGFCKSSENIVRINVPYG 1148

Query: 1152 AKLLCQELFSMGITLKFDTEFC 1173
            AKLL QELFSMGI LKF+T+ C
Sbjct: 1149 AKLLYQELFSMGICLKFETQVC 1170


>gi|38347314|emb|CAE05960.2| OSJNBa0063C18.1 [Oryza sativa Japonica Group]
          Length = 1316

 Score = 1536 bits (3978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 740/1185 (62%), Positives = 921/1185 (77%), Gaps = 36/1185 (3%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSK 75
            D+    L+ FC++A+ SFF+E GL+SHQINSYNEF+ +GLQ+ FDS GE  VEP YDPS 
Sbjct: 141  DMSIPSLEKFCKEASRSFFDEIGLISHQINSYNEFVSHGLQELFDSLGEVTVEPSYDPSN 200

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFA-GNGGDEHDMF--PRHARLQNMTYSSRMKVKVQFQ 132
            +G G WR+A ++FG+V L++P F++ G   DE  +   PRHARLQNMTYSS+MKV+V FQ
Sbjct: 201  RGPGGWRHAIIKFGRVQLEEPVFWSHGCDIDEQSLKLKPRHARLQNMTYSSKMKVEVHFQ 260

Query: 133  VYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCDFDH 192
            VY+ ++  SDK KTG +++  K  + +ET  I IGR+PVMV S+LCW+  +++ DC FD 
Sbjct: 261  VYSMEK--SDKAKTGNDKFGYKRNIINETYYINIGRLPVMVMSNLCWLHKLKESDCQFDS 318

Query: 193  GGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKG 252
            GGYF+IKG EKVF+AQEQ CL R+WV +   W V++ S  +R R+ ++L+D +  ED  G
Sbjct: 319  GGYFLIKGMEKVFIAQEQKCLTRIWVEDRPCWMVSFLSPIRRRRIYIKLIDSANNEDASG 378

Query: 253  GEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD 312
            G K++S+ FL   +PIW++FFALG+SSDK+I ++I+    D  ++N + A+I ++D  C+
Sbjct: 379  G-KIISISFLYANMPIWLMFFALGISSDKDIFDVINMEDCDACVINTITATIKESDELCE 437

Query: 313  EFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAY 372
             FRK   A +YVD+LIK + FPP E  ++ +  YLFPS+ G + KA FLGYMVKCLL A+
Sbjct: 438  GFRKSDKARQYVDELIKNSKFPPAEPFDDYIAKYLFPSISGNRNKALFLGYMVKCLLMAF 497

Query: 373  SGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYL 432
            +G+RKCDN+DDFRNKRL+LAGELL REL+ HI HA + M KALQRDL  +R ++  ++YL
Sbjct: 498  TGKRKCDNKDDFRNKRLDLAGELLGRELRAHIRHAERLMVKALQRDLNSERELQEFDHYL 557

Query: 433  DASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKV 492
            DASI+TNGL+RAFSTG+W HP+KR ER +GIVA L R NPLQ + DLR+TRQ+V Y GK 
Sbjct: 558  DASIITNGLNRAFSTGSWCHPYKRNERCAGIVATLRRTNPLQMISDLRKTRQRVAYAGKA 617

Query: 493  GDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFNSGMEKLADD 552
            GDARYP+PS+WGK+CF+STPDGENCGLVKNL VT  VS+ +  P+ ++  + GM KL + 
Sbjct: 618  GDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTATVSSRVAPPLIDRFISCGMNKLHEI 677

Query: 553  ASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMD 612
             +  +    K+F++GDW+G C D  SFV  LR  RR   +  QVEIKRD+ Q EVR+F D
Sbjct: 678  PTEEVPRMDKIFLNGDWVGSCSDPASFVLRLRCMRRSGLIDPQVEIKRDKHQREVRVFSD 737

Query: 613  AGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDI 672
            AGRILRPLLVVEN+ KI+  +G +Y+FQ L+   IIE +G EEEED  +AWGI+ L +  
Sbjct: 738  AGRILRPLLVVENLNKIRRPKGSSYSFQWLMQQEIIEFIGVEEEEDIRSAWGIRNLFESE 797

Query: 673  EDKKPIK--------------------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 712
            E+   +K                    +THCELD+SFLLGLSCGIIPFANH+ ARRVLYQ
Sbjct: 798  EEAPMVKMNKAEDVFNVKRKIGGEVSGYTHCELDLSFLLGLSCGIIPFANHNFARRVLYQ 857

Query: 713  SQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGY--GHNHILPRPE 770
            S+KHS QAIG+ TTNP IRVDTLSHQL+YPQRPLF+T+I+DC+G+  Y  G      RPE
Sbjct: 858  SEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKTVIADCIGRSEYTFGRKDDFARPE 917

Query: 771  LYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNK--EMQVKRRS 828
             +NGQNAIVAVNVH G+NQEDS+VMNRASLERGMFR+EH R+YKAEV+NK      KR  
Sbjct: 918  YFNGQNAIVAVNVHQGFNQEDSVVMNRASLERGMFRTEHFRNYKAEVENKGGPGGNKRLK 977

Query: 829  SDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGM 888
              D ++FGK+QSK GRVD+LDDDG P++GA+LQSGDIVIGK ++SG DHSIKLKHTE+GM
Sbjct: 978  MKDKIDFGKMQSKRGRVDNLDDDGLPYVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGM 1037

Query: 889  VQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVP 948
            VQ+V+LS+ND+GKNF+VV+LRQVRSPCLGDKFSSMHGQKGV+GFLESQENFPFT QGIVP
Sbjct: 1038 VQRVLLSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVP 1097

Query: 949  DIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRA 1008
            DIVINPHAFP+RQTPGQLLEAALGKGI ALG     G  RYATPF T S D IT+QLH+A
Sbjct: 1098 DIVINPHAFPTRQTPGQLLEAALGKGI-ALG-----GTMRYATPFTTASFDVITDQLHKA 1151

Query: 1009 GFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADR 1068
            GFS+WG E + +GRTGE + SLIF+GPTFYQRLIHM+EDKVKFRNTGPVHPLTRQPVADR
Sbjct: 1152 GFSRWGAESVLNGRTGERMHSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADR 1211

Query: 1069 KRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRK 1128
            KRFGG+KFGEMERDCL+AHGAAANLHERLF LSD  QMH+C+ C+ VANVI R V GG+K
Sbjct: 1212 KRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHVCQTCERVANVIMRPVPGGKK 1271

Query: 1129 VRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTEFC 1173
            +RGPYC  C S ++IV+ NVPYGAKLL QELFSMGI L+F+TE C
Sbjct: 1272 IRGPYCGFCRSSENIVRINVPYGAKLLYQELFSMGICLRFETEVC 1316


>gi|115460882|ref|NP_001054041.1| Os04g0641000 [Oryza sativa Japonica Group]
 gi|113565612|dbj|BAF15955.1| Os04g0641000, partial [Oryza sativa Japonica Group]
          Length = 1270

 Score = 1536 bits (3976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 740/1185 (62%), Positives = 921/1185 (77%), Gaps = 36/1185 (3%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSK 75
            D+    L+ FC++A+ SFF+E GL+SHQINSYNEF+ +GLQ+ FDS GE  VEP YDPS 
Sbjct: 95   DMSIPSLEKFCKEASRSFFDEIGLISHQINSYNEFVSHGLQELFDSLGEVTVEPSYDPSN 154

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFA-GNGGDEHDMF--PRHARLQNMTYSSRMKVKVQFQ 132
            +G G WR+A ++FG+V L++P F++ G   DE  +   PRHARLQNMTYSS+MKV+V FQ
Sbjct: 155  RGPGGWRHAIIKFGRVQLEEPVFWSHGCDIDEQSLKLKPRHARLQNMTYSSKMKVEVHFQ 214

Query: 133  VYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCDFDH 192
            VY+ ++  SDK KTG +++  K  + +ET  I IGR+PVMV S+LCW+  +++ DC FD 
Sbjct: 215  VYSMEK--SDKAKTGNDKFGYKRNIINETYYINIGRLPVMVMSNLCWLHKLKESDCQFDS 272

Query: 193  GGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKG 252
            GGYF+IKG EKVF+AQEQ CL R+WV +   W V++ S  +R R+ ++L+D +  ED  G
Sbjct: 273  GGYFLIKGMEKVFIAQEQKCLTRIWVEDRPCWMVSFLSPIRRRRIYIKLIDSANNEDASG 332

Query: 253  GEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD 312
            G K++S+ FL   +PIW++FFALG+SSDK+I ++I+    D  ++N + A+I ++D  C+
Sbjct: 333  G-KIISISFLYANMPIWLMFFALGISSDKDIFDVINMEDCDACVINTITATIKESDELCE 391

Query: 313  EFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAY 372
             FRK   A +YVD+LIK + FPP E  ++ +  YLFPS+ G + KA FLGYMVKCLL A+
Sbjct: 392  GFRKSDKARQYVDELIKNSKFPPAEPFDDYIAKYLFPSISGNRNKALFLGYMVKCLLMAF 451

Query: 373  SGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYL 432
            +G+RKCDN+DDFRNKRL+LAGELL REL+ HI HA + M KALQRDL  +R ++  ++YL
Sbjct: 452  TGKRKCDNKDDFRNKRLDLAGELLGRELRAHIRHAERLMVKALQRDLNSERELQEFDHYL 511

Query: 433  DASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKV 492
            DASI+TNGL+RAFSTG+W HP+KR ER +GIVA L R NPLQ + DLR+TRQ+V Y GK 
Sbjct: 512  DASIITNGLNRAFSTGSWCHPYKRNERCAGIVATLRRTNPLQMISDLRKTRQRVAYAGKA 571

Query: 493  GDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFNSGMEKLADD 552
            GDARYP+PS+WGK+CF+STPDGENCGLVKNL VT  VS+ +  P+ ++  + GM KL + 
Sbjct: 572  GDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTATVSSRVAPPLIDRFISCGMNKLHEI 631

Query: 553  ASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMD 612
             +  +    K+F++GDW+G C D  SFV  LR  RR   +  QVEIKRD+ Q EVR+F D
Sbjct: 632  PTEEVPRMDKIFLNGDWVGSCSDPASFVLRLRCMRRSGLIDPQVEIKRDKHQREVRVFSD 691

Query: 613  AGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDI 672
            AGRILRPLLVVEN+ KI+  +G +Y+FQ L+   IIE +G EEEED  +AWGI+ L +  
Sbjct: 692  AGRILRPLLVVENLNKIRRPKGSSYSFQWLMQQEIIEFIGVEEEEDIRSAWGIRNLFESE 751

Query: 673  EDKKPIK--------------------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 712
            E+   +K                    +THCELD+SFLLGLSCGIIPFANH+ ARRVLYQ
Sbjct: 752  EEAPMVKMNKAEDVFNVKRKIGGEVSGYTHCELDLSFLLGLSCGIIPFANHNFARRVLYQ 811

Query: 713  SQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGY--GHNHILPRPE 770
            S+KHS QAIG+ TTNP IRVDTLSHQL+YPQRPLF+T+I+DC+G+  Y  G      RPE
Sbjct: 812  SEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKTVIADCIGRSEYTFGRKDDFARPE 871

Query: 771  LYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNK--EMQVKRRS 828
             +NGQNAIVAVNVH G+NQEDS+VMNRASLERGMFR+EH R+YKAEV+NK      KR  
Sbjct: 872  YFNGQNAIVAVNVHQGFNQEDSVVMNRASLERGMFRTEHFRNYKAEVENKGGPGGNKRLK 931

Query: 829  SDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGM 888
              D ++FGK+QSK GRVD+LDDDG P++GA+LQSGDIVIGK ++SG DHSIKLKHTE+GM
Sbjct: 932  MKDKIDFGKMQSKRGRVDNLDDDGLPYVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGM 991

Query: 889  VQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVP 948
            VQ+V+LS+ND+GKNF+VV+LRQVRSPCLGDKFSSMHGQKGV+GFLESQENFPFT QGIVP
Sbjct: 992  VQRVLLSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVP 1051

Query: 949  DIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRA 1008
            DIVINPHAFP+RQTPGQLLEAALGKGI ALG     G  RYATPF T S D IT+QLH+A
Sbjct: 1052 DIVINPHAFPTRQTPGQLLEAALGKGI-ALG-----GTMRYATPFTTASFDVITDQLHKA 1105

Query: 1009 GFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADR 1068
            GFS+WG E + +GRTGE + SLIF+GPTFYQRLIHM+EDKVKFRNTGPVHPLTRQPVADR
Sbjct: 1106 GFSRWGAESVLNGRTGERMHSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADR 1165

Query: 1069 KRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRK 1128
            KRFGG+KFGEMERDCL+AHGAAANLHERLF LSD  QMH+C+ C+ VANVI R V GG+K
Sbjct: 1166 KRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMHVCQTCERVANVIMRPVPGGKK 1225

Query: 1129 VRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTEFC 1173
            +RGPYC  C S ++IV+ NVPYGAKLL QELFSMGI L+F+TE C
Sbjct: 1226 IRGPYCGFCRSSENIVRINVPYGAKLLYQELFSMGICLRFETEVC 1270


>gi|357126199|ref|XP_003564776.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like
            [Brachypodium distachyon]
          Length = 1213

 Score = 1525 bits (3949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 731/1165 (62%), Positives = 910/1165 (78%), Gaps = 18/1165 (1%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSK 75
            D+    L+ FC++A+ SFF E GL+SHQINSYNEF+ +GLQ+ FDS GE  VEPGYDPSK
Sbjct: 60   DMNLTSLEKFCKEASRSFFEEIGLISHQINSYNEFVSHGLQELFDSLGEVTVEPGYDPSK 119

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMF---PRHARLQNMTYSSRMKVKVQFQ 132
            KG G WR+A ++FG+V L++P F++G  G + +     PRHARLQNMTYSS+M+V+V  Q
Sbjct: 120  KGPGGWRHAIIKFGKVKLEEPVFWSGKIGIDEESLKLKPRHARLQNMTYSSKMEVEVNIQ 179

Query: 133  VYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCDFDH 192
            VY+ ++  SDK KTG + +  K  + +ET  + IGR+PVMV SDLCW+  + + DC FD 
Sbjct: 180  VYSMEK--SDKAKTGNDHFGHKRDIINETHWVTIGRLPVMVNSDLCWLHKLGESDCLFDS 237

Query: 193  GGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKG 252
            GGYF+IKG EK+F+AQEQ CL R+WV++   W V+Y SE KR R+ ++L+D +   D+ G
Sbjct: 238  GGYFLIKGMEKIFIAQEQRCLTRIWVADRPCWNVSYLSEMKRRRVYIKLIDSTTNNDLNG 297

Query: 253  GEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD 312
              K++S+ FL   +PIW+LFFALGVSSDKE+ ++ID    D S++N + A+I ++D  C+
Sbjct: 298  A-KIISISFLYANMPIWLLFFALGVSSDKEVFDMIDMKDCDASVINAISATIRESDELCE 356

Query: 313  EFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAY 372
             FR+   A KYVD L+K + FPP E   + +  YLFP + G + KA FLGYMVKCLL A+
Sbjct: 357  GFRQSDKARKYVDDLVKSSKFPPAEPFTDYVAKYLFPGISGNRNKAFFLGYMVKCLLMAF 416

Query: 373  SGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYL 432
            +G+RKCDN+DDFRNKRLEL G+LL REL+ H+ HA + M KA+QRDL  DR ++    YL
Sbjct: 417  TGKRKCDNKDDFRNKRLELPGQLLGRELRAHLRHAERLMVKAMQRDLNSDRDLQFPLRYL 476

Query: 433  DASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKV 492
            DASI+TNG++RAF+TG+WSHP+ R ER SGIVA L R NPLQ + DLR++RQQV Y GKV
Sbjct: 477  DASIITNGINRAFATGSWSHPYIRNERCSGIVATLRRTNPLQMMSDLRKSRQQVAYAGKV 536

Query: 493  GDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFNSGMEKLADD 552
            GDARYP+PS+WGK+CF+STPDGENCGLVKNL VT +VS+ +++P+ ++  + GM KL + 
Sbjct: 537  GDARYPNPSYWGKMCFMSTPDGENCGLVKNLAVTAIVSSRVVQPLIDRFVSCGMNKLDEI 596

Query: 553  ASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQ--SEVRIF 610
            ++  +    K+F++GDWIG C D  SFV  LR  RR   +  QVEIKRD+ Q   EVR+F
Sbjct: 597  SAKEIPKMDKIFLNGDWIGSCTDPASFVMRLRCMRRANLIDPQVEIKRDKHQFPGEVRVF 656

Query: 611  MDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLK 670
             DAGRILRPLLVVEN+ KI+  + ++YTFQALL   IIE +G EEEED   AWGI++L  
Sbjct: 657  SDAGRILRPLLVVENLNKIRKSKDRHYTFQALLQQEIIEYIGVEEEEDIQCAWGIRHLFP 716

Query: 671  DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSI 730
                +K   +THCELD+SFLLGLSCG+IPFANH+ ARRVLYQS+KHS QAIG+ TTNP  
Sbjct: 717  S-SGEKVSGYTHCELDLSFLLGLSCGLIPFANHNFARRVLYQSEKHSQQAIGYSTTNPLT 775

Query: 731  RVDTLSHQLFYPQRPLFRTMISDCLGKPGY--GHNHILPRPELYNGQNAIVAVNVHLGYN 788
            RVDT SHQL+YPQRPLF+T+ +DC+G+  Y  G      RPE +NGQNAIVAVNVH G+N
Sbjct: 776  RVDTHSHQLYYPQRPLFKTVTADCIGRSDYTIGRKDDFARPEYFNGQNAIVAVNVHQGFN 835

Query: 789  QEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSL 848
            QEDSLVMNRASLERGMFR+EHIRSYKAEV+ KE  +KR    + V+FGK+QSK GRVD+L
Sbjct: 836  QEDSLVMNRASLERGMFRTEHIRSYKAEVETKE-PIKRLKLKEKVDFGKMQSKRGRVDNL 894

Query: 849  DDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSL 908
            DDDG P++GA+LQSGDIVIGK ++SG DHSIK+KHTE+GMVQ+V+LS+ND+GKNF+VV+L
Sbjct: 895  DDDGLPYVGASLQSGDIVIGKVSESGEDHSIKMKHTEKGMVQRVLLSANDEGKNFAVVTL 954

Query: 909  RQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLE 968
            RQVRSPC+GDKFSSMHGQKGV+GFLESQENFPFT QGIVPD+VINPHAFP+RQTPGQLLE
Sbjct: 955  RQVRSPCVGDKFSSMHGQKGVIGFLESQENFPFTCQGIVPDVVINPHAFPTRQTPGQLLE 1014

Query: 969  AALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVR 1028
            AALGKGI ALG     G  RYATPF   S++ I+EQLH+AGFS+ G E + +GRTGE + 
Sbjct: 1015 AALGKGI-ALG-----GAMRYATPFTPASLEVISEQLHKAGFSRGGAESVINGRTGERMH 1068

Query: 1029 SLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG 1088
            SLIF+GP FYQRL HM+EDKVKFRNTGPVHPLTRQPVADRKRFGG+KFGEMERDCL+AHG
Sbjct: 1069 SLIFMGPNFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHG 1128

Query: 1089 AAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANV 1148
            AAANLHERLF LSD  QMHICR C+ VANV+ R V GG+++RGPYC  C S ++ V+  V
Sbjct: 1129 AAANLHERLFMLSDFSQMHICRTCERVANVVMRGVPGGKRIRGPYCGFCRSSENTVRIAV 1188

Query: 1149 PYGAKLLCQELFSMGITLKFDTEFC 1173
            PYGAKLL QELF MGI LKF TE C
Sbjct: 1189 PYGAKLLYQELFCMGICLKFQTEIC 1213


>gi|357156376|ref|XP_003577435.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like
            [Brachypodium distachyon]
          Length = 1213

 Score = 1521 bits (3938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 729/1165 (62%), Positives = 907/1165 (77%), Gaps = 18/1165 (1%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSK 75
            D+    L+ FC++A+ SFF E GL+SHQINSYNEFI +GLQ+ FDS GE  VEPGYDPSK
Sbjct: 60   DMNLTSLEKFCKEASRSFFEEIGLISHQINSYNEFISHGLQELFDSLGEVTVEPGYDPSK 119

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMF---PRHARLQNMTYSSRMKVKVQFQ 132
            KG G WR+A ++FG+V L++P F++G    + +     PRHARLQNMTYSS+M+V+V  Q
Sbjct: 120  KGPGGWRHAIIKFGKVKLEEPVFWSGKIDIDEESLKLKPRHARLQNMTYSSKMEVEVNIQ 179

Query: 133  VYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCDFDH 192
            VY+ ++  SDK KTG + +  K  + +ET  + IGR+PVMV SDLCW+  + + DC FD 
Sbjct: 180  VYSMEK--SDKAKTGNDHFGHKRDIINETHWVTIGRLPVMVNSDLCWLHKLGESDCLFDS 237

Query: 193  GGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKG 252
            GGYF+IKG EK+F+AQEQ CL R+WV++   W V+Y SE KR R+ ++L+D +   D+ G
Sbjct: 238  GGYFLIKGMEKIFIAQEQRCLTRIWVADQPCWNVSYLSEMKRRRVYIKLIDSTTNNDLNG 297

Query: 253  GEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD 312
              K++S+ FL   +PIW+LFFALGVSSDKE+ ++ID    D S++N ++A+I ++D  C+
Sbjct: 298  A-KIISISFLYANMPIWLLFFALGVSSDKEVFDMIDMKDCDASVINAIYATIRESDELCE 356

Query: 313  EFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAY 372
             FR+   A KYVD L+K + FPP E   + +  YLFP + G + K+ FLGYMVKCLL A+
Sbjct: 357  GFRQSDKARKYVDDLVKSSKFPPAEPFTDYVAKYLFPGISGNRNKSFFLGYMVKCLLMAF 416

Query: 373  SGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYL 432
            +G+RKCDN+DDFRNKRLEL G+LL REL+ H+ HA + M KA+QRDL  DR ++    YL
Sbjct: 417  TGKRKCDNKDDFRNKRLELPGQLLGRELRAHLRHAERLMVKAMQRDLNSDRDLQFPLRYL 476

Query: 433  DASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKV 492
            DASI+TNG++RAF+TG+WSHP+ R ER SGIVA L R NPLQ + DLR++RQQV Y GKV
Sbjct: 477  DASIITNGINRAFATGSWSHPYIRNERCSGIVATLRRTNPLQMMSDLRKSRQQVAYAGKV 536

Query: 493  GDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFNSGMEKLADD 552
            GDARYP+PS+WGK+CF+STPDGENCGLVKNL VT +VS+ +++P+ ++  + GM KL + 
Sbjct: 537  GDARYPNPSYWGKMCFMSTPDGENCGLVKNLAVTAIVSSRVVQPLIDRFVSCGMNKLDEI 596

Query: 553  ASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQ--SEVRIF 610
            ++  +    K+F++GDWIG C D  SFV  LR  RR   +  QVEIKRD+ Q   EVR+F
Sbjct: 597  SAKEIPKMDKIFLNGDWIGSCTDPASFVMRLRCMRRANLIDPQVEIKRDKHQFPGEVRVF 656

Query: 611  MDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLK 670
             DAGRILRPLLVVEN+ KI+  + + YTFQALL   IIE +G EEEED   AWGI++L  
Sbjct: 657  SDAGRILRPLLVVENLNKIRKSKDRPYTFQALLQQEIIEYIGVEEEEDIQCAWGIRHLFP 716

Query: 671  DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSI 730
                +K   +THCELD+SFLLGLSCG+IPFANH+ ARRVLYQS+KHS QAIG+ TTNP  
Sbjct: 717  S-SGEKVSGYTHCELDLSFLLGLSCGLIPFANHNFARRVLYQSEKHSQQAIGYSTTNPLT 775

Query: 731  RVDTLSHQLFYPQRPLFRTMISDCLGKPGY--GHNHILPRPELYNGQNAIVAVNVHLGYN 788
            RVDT SHQL+YPQRPLF+T+ +DC+G+  Y  G      RPE +NGQNAIVAVNVH G+N
Sbjct: 776  RVDTHSHQLYYPQRPLFKTVTADCIGRSDYTIGRKDDFARPEYFNGQNAIVAVNVHQGFN 835

Query: 789  QEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSL 848
            QEDSLVMNRASLERGMFR+EHIRSYKAEV+ KE   KR    + V+FGK+QSK GRVD+L
Sbjct: 836  QEDSLVMNRASLERGMFRTEHIRSYKAEVETKE-PTKRLKLKEKVDFGKMQSKRGRVDNL 894

Query: 849  DDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSL 908
            DDDG P++GA+LQSGDIVIGK ++SG DHSIK+KHTE+GM Q+V+LS+ND+GKNF+VV+L
Sbjct: 895  DDDGLPYVGASLQSGDIVIGKVSESGEDHSIKMKHTEKGMAQRVLLSANDEGKNFAVVTL 954

Query: 909  RQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLE 968
            RQVRSPC+GDKFSSMHGQKGV+GFLESQENFPFT QGIVPD+VINPHAFP+RQTPGQLLE
Sbjct: 955  RQVRSPCVGDKFSSMHGQKGVIGFLESQENFPFTCQGIVPDVVINPHAFPTRQTPGQLLE 1014

Query: 969  AALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVR 1028
            AALGKGI ALG     G  RYATPF   S++ I+EQLH+AGFS+ G E + +GRTGE + 
Sbjct: 1015 AALGKGI-ALG-----GAMRYATPFTPASLEVISEQLHKAGFSRSGAESVINGRTGERMH 1068

Query: 1029 SLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG 1088
            SLIF+GP FYQRL HM+EDKVKFRNTGPVHPLTRQPVADRKRFGG+KFGEMERDCL+AHG
Sbjct: 1069 SLIFMGPNFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHG 1128

Query: 1089 AAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANV 1148
            AAANLHERLF LSD  QMHICR C+ VANV+ R V GG+++RGPYC  C S ++ V+  V
Sbjct: 1129 AAANLHERLFMLSDFSQMHICRTCERVANVVMRSVPGGKRIRGPYCGFCRSSENTVRIAV 1188

Query: 1149 PYGAKLLCQELFSMGITLKFDTEFC 1173
            PYGAKLL QELF MGI LKF TE C
Sbjct: 1189 PYGAKLLYQELFCMGICLKFQTEIC 1213


>gi|38344903|emb|CAD41847.2| OSJNBb0079B02.6 [Oryza sativa Japonica Group]
          Length = 1343

 Score = 1521 bits (3937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 740/1212 (61%), Positives = 921/1212 (75%), Gaps = 63/1212 (5%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSK 75
            D+    L+ FC++A+ SFF+E GL+SHQINSYNEF+ +GLQ+ FDS GE  VEP YDPS 
Sbjct: 141  DMSIPSLEKFCKEASRSFFDEIGLISHQINSYNEFVSHGLQELFDSLGEVTVEPSYDPSN 200

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFA-GNGGDEHDMF--PRHARLQNMTYSSRMKVKVQFQ 132
            +G G WR+A ++FG+V L++P F++ G   DE  +   PRHARLQNMTYSS+MKV+V FQ
Sbjct: 201  RGPGGWRHAIIKFGRVQLEEPVFWSHGCDIDEQSLKLKPRHARLQNMTYSSKMKVEVHFQ 260

Query: 133  VYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCDFDH 192
            VY+ ++  SDK KTG +++  K  + +ET  I IGR+PVMV S+LCW+  +++ DC FD 
Sbjct: 261  VYSMEK--SDKAKTGNDKFGYKRNIINETYYINIGRLPVMVMSNLCWLHKLKESDCQFDS 318

Query: 193  GGYFIIKGAEK---------------------------VFVAQEQICLKRLWVSNSMGWT 225
            GGYF+IKG EK                           VF+AQEQ CL R+WV +   W 
Sbjct: 319  GGYFLIKGMEKDELQGCGGKLYSRNLCLNGKLETPTQKVFIAQEQKCLTRIWVEDRPCWM 378

Query: 226  VAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVN 285
            V++ S  +R R+ ++L+D +  ED  GG K++S+ FL   +PIW++FFALG+SSDK+I +
Sbjct: 379  VSFLSPIRRRRIYIKLIDSANNEDASGG-KIISISFLYANMPIWLMFFALGISSDKDIFD 437

Query: 286  LIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNT 345
            +I+    D  ++N + A+I ++D  C+ FRK   A +YVD+LIK + FPP E  ++ +  
Sbjct: 438  VINMEDCDACVINTITATIKESDELCEGFRKSDKARQYVDELIKNSKFPPAEPFDDYIAK 497

Query: 346  YLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIA 405
            YLFPS+ G + KA FLGYMVKCLL A++G+RKCDN+DDFRNKRL+LAGELL REL+ HI 
Sbjct: 498  YLFPSISGNRNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLDLAGELLGRELRAHIR 557

Query: 406  HARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVA 465
            HA + M KALQRDL  +R ++  ++YLDASI+TNGL+RAFSTG+W HP+KR ER +GIVA
Sbjct: 558  HAERLMVKALQRDLNSERELQEFDHYLDASIITNGLNRAFSTGSWCHPYKRNERCAGIVA 617

Query: 466  NLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV 525
             L R NPLQ + DLR+TRQ+V Y GK GDARYP+PS+WGK+CF+STPDGENCGLVKNL V
Sbjct: 618  TLRRTNPLQMISDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAV 677

Query: 526  TGLVSTSILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRR 585
            T  VS+ +  P+ ++  + GM KL +  +  +    K+F++GDW+G C D  SFV  LR 
Sbjct: 678  TATVSSRVAPPLIDRFISCGMNKLHEIPTEEVPRMDKIFLNGDWVGSCSDPASFVLRLRC 737

Query: 586  KRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDH 645
             RR   +  QVEIKRD+ Q EVR+F DAGRILRPLLVVEN+ KI+  +G +Y+FQ L+  
Sbjct: 738  MRRSGLIDPQVEIKRDKHQREVRVFSDAGRILRPLLVVENLNKIRRPKGSSYSFQWLMQQ 797

Query: 646  GIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIK--------------------FTHCEL 685
             IIE +G EEEED  +AWGI+ L +  E+   +K                    +THCEL
Sbjct: 798  EIIEFIGVEEEEDIRSAWGIRNLFESEEEAPMVKMNKAEDVFNVKRKIGGEVSGYTHCEL 857

Query: 686  DMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRP 745
            D+SFLLGLSCGIIPFANH+ ARRVLYQS+KHS QAIG+ TTNP IRVDTLSHQL+YPQRP
Sbjct: 858  DLSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRP 917

Query: 746  LFRTMISDCLGKPGY--GHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERG 803
            LF+T+I+DC+G+  Y  G      RPE +NGQNAIVAVNVH G+NQEDS+VMNRASLERG
Sbjct: 918  LFKTVIADCIGRSEYTFGRKDDFARPEYFNGQNAIVAVNVHQGFNQEDSVVMNRASLERG 977

Query: 804  MFRSEHIRSYKAEVDNK--EMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQ 861
            MFR+EH R+YKAEV+NK      KR    D ++FGK+QSK GRVD+LDDDG P++GA+LQ
Sbjct: 978  MFRTEHFRNYKAEVENKGGPGGNKRLKMKDKIDFGKMQSKRGRVDNLDDDGLPYVGASLQ 1037

Query: 862  SGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFS 921
            SGDIVIGK ++SG DHSIKLKHTE+GMVQ+V+LS+ND+GKNF+VV+LRQVRSPCLGDKFS
Sbjct: 1038 SGDIVIGKVSESGEDHSIKLKHTEKGMVQRVLLSANDEGKNFAVVTLRQVRSPCLGDKFS 1097

Query: 922  SMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKG 981
            SMHGQKGV+GFLESQENFPFT QGIVPDIVINPHAFP+RQTPGQLLEAALGKGI ALG  
Sbjct: 1098 SMHGQKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQLLEAALGKGI-ALG-- 1154

Query: 982  ICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRL 1041
               G  RYATPF T S D IT+QLH+AGFS+WG E + +GRTGE + SLIF+GPTFYQRL
Sbjct: 1155 ---GTMRYATPFTTASFDVITDQLHKAGFSRWGAESVLNGRTGERMHSLIFMGPTFYQRL 1211

Query: 1042 IHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLS 1101
            IHM+EDKVKFRNTGPVHPLTRQPVADRKRFGG+KFGEMERDCL+AHGAAANLHERLF LS
Sbjct: 1212 IHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLS 1271

Query: 1102 DSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFS 1161
            D  QMH+C+ C+ VANVI R V GG+K+RGPYC  C S ++IV+ NVPYGAKLL QELFS
Sbjct: 1272 DFSQMHVCQTCERVANVIMRPVPGGKKIRGPYCGFCRSSENIVRINVPYGAKLLYQELFS 1331

Query: 1162 MGITLKFDTEFC 1173
            MGI L+F+TE C
Sbjct: 1332 MGICLRFETEVC 1343


>gi|90399221|emb|CAJ86030.1| B0414F07.4 [Oryza sativa Indica Group]
          Length = 1343

 Score = 1518 bits (3931), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 740/1212 (61%), Positives = 920/1212 (75%), Gaps = 63/1212 (5%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSK 75
            D+    L+ FC++A+ SFF+E GL+SHQINSYNEF+ +GLQ+ FDS GE  VEP YDPS 
Sbjct: 141  DMSIPSLEKFCKEASRSFFDEIGLISHQINSYNEFVSHGLQELFDSLGEVTVEPSYDPSN 200

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFA-GNGGDEHDMF--PRHARLQNMTYSSRMKVKVQFQ 132
            +G G WR+A ++FG+V L++P F++ G   DE  +   PRHARLQNMTYSS+MKV+V FQ
Sbjct: 201  RGPGGWRHAIIKFGRVQLEEPVFWSHGCDIDEQSLKLKPRHARLQNMTYSSKMKVEVHFQ 260

Query: 133  VYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCDFDH 192
            VY+ ++  SDK KTG +++  K  + +ET  I IGR+PVMV S+LCW+  +++ DC FD 
Sbjct: 261  VYSMEK--SDKAKTGNDKFGYKRNIINETYYINIGRLPVMVMSNLCWLHKLKESDCQFDS 318

Query: 193  GGYFIIKGAEK---------------------------VFVAQEQICLKRLWVSNSMGWT 225
            GGYF+IKG EK                           VF+AQEQ CL R+WV +   W 
Sbjct: 319  GGYFLIKGMEKDELQGCGGKLYSRNLCLNGKLETPTQKVFIAQEQKCLTRIWVEDRPCWM 378

Query: 226  VAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVN 285
            V++ S  +R R+ ++L+D +  ED  GG K++S+ FL   +PIW++FFALG+SSDK+I +
Sbjct: 379  VSFLSPIRRRRIYIKLIDSANNEDASGG-KIISISFLYANMPIWLMFFALGISSDKDIFD 437

Query: 286  LIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNT 345
            +I+    D  ++N + A+I ++D  C+ FRK   A +YVD+LIK + FPP E  ++ +  
Sbjct: 438  VINMEDCDACVINTITATIKESDELCEGFRKSDKARQYVDELIKNSKFPPAEPFDDYIAK 497

Query: 346  YLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIA 405
            YLFPS+ G + KA FLGYMVKCLL A++G+RKCDN+DDFRNKRL+LAGELL REL+ HI 
Sbjct: 498  YLFPSISGNRNKALFLGYMVKCLLMAFTGKRKCDNKDDFRNKRLDLAGELLGRELRAHIR 557

Query: 406  HARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVA 465
            HA + M KALQRDL  +R ++  ++YLDASI+TNGL+RAFSTG+W HP+KR ER +GIVA
Sbjct: 558  HAERLMVKALQRDLNSERELQEFDHYLDASIITNGLNRAFSTGSWCHPYKRNERCAGIVA 617

Query: 466  NLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV 525
             L R NPLQ + DLR+TRQ+V Y GK GDARYP+PS+WGK+CF+STPDGENCGLVKNL V
Sbjct: 618  TLRRTNPLQMISDLRKTRQRVAYAGKAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAV 677

Query: 526  TGLVSTSILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRR 585
            T  VS+ +  P+ ++  + GM KL +  +  +    K+F++GDW+G C D  SFV  LR 
Sbjct: 678  TATVSSRVAPPLIDRFISCGMNKLHEIPTEEVPRMDKIFLNGDWVGSCSDPASFVLRLRC 737

Query: 586  KRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDH 645
             RR   +  QVEIK D+ Q EVR+F DAGRILRPLLVVEN+ KI+  +G +Y+FQ L+  
Sbjct: 738  MRRSGLIDPQVEIKWDKHQREVRVFSDAGRILRPLLVVENLNKIRRPKGSSYSFQWLMQQ 797

Query: 646  GIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIK--------------------FTHCEL 685
             IIE +G EEEED  +AWGI+ L +  E+   +K                    +THCEL
Sbjct: 798  EIIEFIGVEEEEDIRSAWGIRNLFESEEEAPMVKMNKAEDVFNVKRKIGGEVSGYTHCEL 857

Query: 686  DMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRP 745
            D+SFLLGLSCGIIPFANH+ ARRVLYQS+KHS QAIG+ TTNP IRVDTLSHQL+YPQRP
Sbjct: 858  DLSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRP 917

Query: 746  LFRTMISDCLGKPGY--GHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERG 803
            LF+T+I+DC+G+  Y  G      RPE +NGQNAIVAVNVH G+NQEDSLVMNRASLERG
Sbjct: 918  LFKTVIADCIGRSEYTFGRKDDFARPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERG 977

Query: 804  MFRSEHIRSYKAEVDNK--EMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQ 861
            MFR+EH R+YKAEV+NK      KR    D ++FGK+QSK GRVD+LDDDG P++GA+LQ
Sbjct: 978  MFRTEHFRNYKAEVENKGGPGGNKRLKMKDKIDFGKMQSKRGRVDNLDDDGLPYVGASLQ 1037

Query: 862  SGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFS 921
            SGDIVIGK ++SG DHSIKLKHTE+GMVQ+V+LS+ND+GKNF+VV+LRQVRSPCLGDKFS
Sbjct: 1038 SGDIVIGKVSESGEDHSIKLKHTEKGMVQRVLLSANDEGKNFAVVTLRQVRSPCLGDKFS 1097

Query: 922  SMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKG 981
            SMHGQKGV+GFLESQENFPFT QGIVPDIVINPHAFP+RQTPGQLLEAALGKGI ALG  
Sbjct: 1098 SMHGQKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQLLEAALGKGI-ALG-- 1154

Query: 982  ICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRL 1041
               G  RYATPF T S D IT+QLH+AGFS+WG E + +GRTGE + SLIF+GPTFYQRL
Sbjct: 1155 ---GTMRYATPFTTASFDVITDQLHKAGFSRWGAESVLNGRTGERMHSLIFMGPTFYQRL 1211

Query: 1042 IHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLS 1101
            IHM+EDKVKFRNTGPVHPLTRQPVADRKRFGG+KFGEMERDCL+AHGAAANLHERLF LS
Sbjct: 1212 IHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLS 1271

Query: 1102 DSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFS 1161
            D  QMH+C+ C+ VANVI R V GG+K+RGPYC  C S ++IV+ NVPYGAKLL QELFS
Sbjct: 1272 DFSQMHVCQTCERVANVIMRPVPGGKKIRGPYCGFCRSSENIVRINVPYGAKLLYQELFS 1331

Query: 1162 MGITLKFDTEFC 1173
            MGI L+F+TE C
Sbjct: 1332 MGICLRFETEVC 1343


>gi|357166265|ref|XP_003580654.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like
            [Brachypodium distachyon]
          Length = 1236

 Score = 1484 bits (3843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 714/1167 (61%), Positives = 901/1167 (77%), Gaps = 21/1167 (1%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSK 75
            D+    L+ FC++A+ SFF+E GL+SHQINSYN+FI +GLQ+ FDS GE  VEP YDPSK
Sbjct: 82   DMSLTSLEKFCKEASRSFFDEIGLISHQINSYNDFISHGLQELFDSLGEVTVEPSYDPSK 141

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHD----MFPRHARLQNMTYSSRMKVKVQF 131
            KG G WR+A ++FG+V L +P F++    D+++    + PRHARLQNMTYSS+M+V++  
Sbjct: 142  KGPGGWRHAIIKFGKVKLQEPVFWSDKCEDKYEEALKLKPRHARLQNMTYSSKMEVEMNI 201

Query: 132  QVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCDFD 191
            QVY+ ++  SDK KT  + +  K  + +ET  + +GR+PVMV S+LCW+  + + DC FD
Sbjct: 202  QVYSMEK--SDKAKTENDHFGHKRDIINETHWVSVGRLPVMVNSNLCWLHKLGESDCLFD 259

Query: 192  HGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIK 251
             GGYF+IKG EK+F+AQEQ CL R+WV +   WTV+Y SE KR R  V+L+D +K  D  
Sbjct: 260  SGGYFLIKGMEKIFIAQEQRCLTRIWVDDRPCWTVSYMSEIKRKRTYVKLIDSTKSNDFS 319

Query: 252  GGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKC 311
               K++S+ FL   +P+W++FFALG+SSDKE+ ++IDF   D S++N++ A+I +++  C
Sbjct: 320  ES-KIISISFLYANMPVWLMFFALGISSDKEVFDIIDFKDSDASVINMISATISESNELC 378

Query: 312  DEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQA 371
            + FRK   A +YVD L+K + FPP ES ++ +  +LFP + G + KA FLGYMVK LL A
Sbjct: 379  EGFRKSDKARQYVDDLVKSSKFPPAESFDDYVARFLFPGISGNRNKAFFLGYMVKYLLMA 438

Query: 372  YSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYY 431
            ++G+ KCDNRD FRNKRLEL GELL REL+ H+ HA + M KA+QRDL  DR ++    Y
Sbjct: 439  FTGKLKCDNRDAFRNKRLELPGELLGRELRAHLRHAERLMVKAMQRDLNSDRDLQFPLGY 498

Query: 432  LDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGK 491
            LD +I+TNG++RAF+TG+W HP+KR ER SG+VA L R NPLQ + DLR++RQQV Y GK
Sbjct: 499  LDPTIITNGINRAFATGSWCHPYKRNERCSGVVATLRRTNPLQMMSDLRKSRQQVAYAGK 558

Query: 492  VGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFNSGMEKLAD 551
             GDARYP+PS+WGK+CF+STPDGENCGLVKNL VT +VS+ +++P+ ++  + GM KL +
Sbjct: 559  AGDARYPNPSYWGKMCFMSTPDGENCGLVKNLAVTAIVSSRVVQPLIDRFVSCGMNKLDE 618

Query: 552  DASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQ--SEVRI 609
              +  +    K+F++G+W+G C D  SFV  LR  RR   +  QVEIKRD+ Q   EVR+
Sbjct: 619  IPAGQIPKMDKIFLNGNWVGSCTDPASFVMRLRCMRRGNLIDPQVEIKRDKHQIPGEVRV 678

Query: 610  FMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLL 669
            F DAGRILRPLLVVEN+ KI+  +  +Y+FQAL+   IIE +G EEEED   AWGI++L 
Sbjct: 679  FSDAGRILRPLLVVENLNKIRKPKDGSYSFQALMQQEIIEYIGVEEEEDILCAWGIRHLF 738

Query: 670  KDI-EDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNP 728
                ED     +THCELD+SFLLGLSC +IPFANH+ ARRVLYQS+KHS QAIG+ TTN 
Sbjct: 739  PGSGEDFS--GYTHCELDLSFLLGLSCSLIPFANHNFARRVLYQSEKHSQQAIGYSTTNQ 796

Query: 729  SIRVDTLSHQLFYPQRPLFRTMISDCLGKPGY--GHNHILPRPELYNGQNAIVAVNVHLG 786
              RVDTLSHQL+YPQRPLF+T+ +DC+G+  Y  G      RPE +NGQNAIVAVNVH G
Sbjct: 797  LTRVDTLSHQLYYPQRPLFKTVTADCIGRSDYTIGRTDDFARPEYFNGQNAIVAVNVHQG 856

Query: 787  YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVD 846
            +NQEDSLVMNRASLERGMFR+E IRSYKA+V+ KE   KR    + V+FGK+QSK GRVD
Sbjct: 857  FNQEDSLVMNRASLERGMFRTELIRSYKADVETKE-PAKRLKLKEKVDFGKMQSKRGRVD 915

Query: 847  SLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVV 906
            SLDDDG P++GA+LQSGDIVIGK ++SG DHSIKLKHTE+GMVQ+V+LS+ND+ KNF+VV
Sbjct: 916  SLDDDGLPYVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQRVLLSANDEEKNFAVV 975

Query: 907  SLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQL 966
            +LRQVRSPC+GDKFSSMHGQKGV+GFLESQENFPFT QGIVPDIVINPHAFP+RQTPGQL
Sbjct: 976  TLRQVRSPCVGDKFSSMHGQKGVIGFLESQENFPFTCQGIVPDIVINPHAFPTRQTPGQL 1035

Query: 967  LEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEM 1026
            LEAALGKGI ALG  +     RYATPF T S++ I+EQLH+AGFS  GTE + +G+TGE 
Sbjct: 1036 LEAALGKGI-ALGSAM-----RYATPFTTASLEVISEQLHKAGFSGGGTESVLNGQTGER 1089

Query: 1027 VRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIA 1086
            + SLIF+GP FYQRL HM+EDKVKFRNTGPVHPLTRQPVADRKRFGG+KFGEMERDCL+A
Sbjct: 1090 MHSLIFMGPNFYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLA 1149

Query: 1087 HGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKA 1146
            HGAAANLHERLF LSD  QMHIC+ C+  ANV+ R + GG+K+RGPYC  C S ++ V+ 
Sbjct: 1150 HGAAANLHERLFMLSDFAQMHICQTCQRAANVVMRAIPGGKKIRGPYCGFCRSSENKVRI 1209

Query: 1147 NVPYGAKLLCQELFSMGITLKFDTEFC 1173
             VPYGAKLL QELFSMGI LKF TE C
Sbjct: 1210 AVPYGAKLLYQELFSMGICLKFKTEVC 1236


>gi|357139731|ref|XP_003571431.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like
            [Brachypodium distachyon]
          Length = 1242

 Score = 1409 bits (3646), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 694/1183 (58%), Positives = 889/1183 (75%), Gaps = 29/1183 (2%)

Query: 1    MDSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFD 60
            M S D     P    D     L+ FC++AA SFF+E GLVSHQINSYN+FI +GLQ+  D
Sbjct: 75   MSSSDPCVQAPI---DFNVATLEKFCKEAARSFFSETGLVSHQINSYNDFISHGLQELID 131

Query: 61   SFGETIVEPGYDPSKKGE-GEWRYASMRFGQVTLDKPSFFAGNGG-DEH--DMFPRHARL 116
            S GE  VEP YDPSKK E G WR+A+++FG+V  ++P F+  +   DEH   + P+HARL
Sbjct: 132  SVGEITVEPDYDPSKKAEAGAWRHATIKFGRVKFEEPVFWVEDTELDEHTLKLKPKHARL 191

Query: 117  QNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSD 176
            QNMTYSS+M V++  QVY+   + SDK K G+  YIQK  + +ET  + IGR+PVMVKS+
Sbjct: 192  QNMTYSSKMFVEMTVQVYS--LMQSDKSKIGKNPYIQKRDILNETKWVSIGRLPVMVKSN 249

Query: 177  LCWMKGVEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNR 236
            LCW+  ++K DC FD+GGYF+IKG EK FVA+EQ CL R+W+ +   W  +Y S+NKR R
Sbjct: 250  LCWLHKLQKTDCQFDYGGYFLIKGMEKAFVAEEQRCLSRIWIKDHPSWDASYMSQNKRER 309

Query: 237  LIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
            + V+LV   + E+  G  K++ ++FL   +PIWI+FFALGVSSDKE  ++ID    D S+
Sbjct: 310  IYVKLV---QSEESHGLRKLVRLFFLGATMPIWIMFFALGVSSDKEAFDMIDIQDCDASL 366

Query: 297  LNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFP-SLHGTK 355
            +NI+ A+I ++D +C+ FR+G  A +YVD+ IK T FPP +S +  +  Y+FP  +   +
Sbjct: 367  VNIISATIKESDEQCEGFRRGGRARQYVDEFIKKTKFPPEQSFDGYVGRYMFPGDVSDNR 426

Query: 356  QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKAL 415
             KA FLGYMVKCLL AYSG RKCD+R +FRNKRL+LA +LL REL VH+ HA++RM K +
Sbjct: 427  SKAFFLGYMVKCLLMAYSGHRKCDDRANFRNKRLDLACQLLRRELWVHLRHAQRRMVKIM 486

Query: 416  QRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQT 475
            QR L GD  ++ +++Y+D SI+TNGL+RAFSTG+W HP+K  ER SGIV NL R NPLQ 
Sbjct: 487  QRHLSGDGDLQVLDHYVDTSIVTNGLNRAFSTGSWCHPYK-YERCSGIVGNLRRTNPLQM 545

Query: 476  LVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE 535
            + DLR+TRQ   Y G  GDARYP+PS+WGK+CFLSTPDGE CG VKNL VT +VS+ + +
Sbjct: 546  MSDLRKTRQLSAYFGNAGDARYPNPSYWGKLCFLSTPDGEKCGFVKNLAVTAVVSSVMRK 605

Query: 536  PIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQ 595
            P+ +   + GM+KL +     L G  K F++G+ IGVC +   FV+ LR  RR  ++  Q
Sbjct: 606  PLMDLFVSCGMKKLNEVRVQELHGTDKTFLNGNLIGVCANPGEFVTHLRNMRRSNKIDRQ 665

Query: 596  VEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKN--YTFQALLDHGIIELVGT 653
            VEIKRD    EVR+F DAGRILRPLL+VEN+  + +++ KN  Y+FQ L+D  IIEL+G 
Sbjct: 666  VEIKRDMQHKEVRVFSDAGRILRPLLIVENLKSMTTIKQKNGSYSFQELVDKNIIELIGV 725

Query: 654  EEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQS 713
            EEEED   A  I+ L     ++  + +THCELD SFLLGLSCGIIPFANH++ARRVL Q+
Sbjct: 726  EEEEDIRCACAIRDLFSGDNEEGFLYYTHCELDPSFLLGLSCGIIPFANHNNARRVLMQA 785

Query: 714  QKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKP--GYGHNHILPRPE- 770
            +K S QAIG+ +TN   RVDTL HQ++YPQ+PLF+T+++DC+GK    +G      RPE 
Sbjct: 786  EKLSQQAIGYSSTNSQYRVDTLFHQMYYPQKPLFKTVVADCIGKSDHNFGEEDDFTRPEN 845

Query: 771  --LYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRS 828
               +NGQNAIV+++VH G+NQEDSLV NR SLERGMFR++H +SYK +++NKE+  +R  
Sbjct: 846  FPYFNGQNAIVSISVHQGFNQEDSLVFNRGSLERGMFRTQHFKSYKTQIENKEV-TRRLK 904

Query: 829  SDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGM 888
              + ++FGK QSK GRVDSLD DG P+IGA+LQSGDIVIGK ++SG DHS+KL HTE+GM
Sbjct: 905  YREKIDFGKTQSKRGRVDSLDIDGLPYIGASLQSGDIVIGKVSESGEDHSMKLMHTEKGM 964

Query: 889  VQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVP 948
            V+KVVLS+NDDGKN +VV+LRQVRSPC+GDKF+SMHGQKGV+G L+SQENFPFT QGIVP
Sbjct: 965  VEKVVLSANDDGKNSAVVTLRQVRSPCVGDKFASMHGQKGVVGLLDSQENFPFTFQGIVP 1024

Query: 949  DIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRA 1008
            DIVINPH FP+RQTPGQLLEAALGKGI ALG     G+ RYATPF TPSVD ITEQLH+A
Sbjct: 1025 DIVINPHGFPTRQTPGQLLEAALGKGI-ALG-----GMTRYATPFTTPSVDVITEQLHKA 1078

Query: 1009 GFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADR 1068
            GFS+WG E + +G+ GE ++SL+F+GP FYQRL HM+ DKVK RNTGPVHPLTRQPV D+
Sbjct: 1079 GFSRWGGESVLNGQNGERMQSLVFMGPAFYQRLHHMAVDKVKLRNTGPVHPLTRQPVEDK 1138

Query: 1069 KRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRK 1128
            KRFGG+KFGEMERDCL+AHGA AN+HERLF +SD  +MHIC+ C+ VANVI R   GG+K
Sbjct: 1139 KRFGGVKFGEMERDCLLAHGATANVHERLFRVSDLSEMHICQACQRVANVILR-SEGGKK 1197

Query: 1129 VRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
            V GPYC  C S ++I++ NVPYGA LL +ELF MGI LKF+TE
Sbjct: 1198 VHGPYCGFCKSAENILRVNVPYGASLLYKELFCMGICLKFETE 1240


>gi|125602346|gb|EAZ41671.1| hypothetical protein OsJ_26208 [Oryza sativa Japonica Group]
          Length = 1257

 Score = 1401 bits (3626), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 694/1180 (58%), Positives = 879/1180 (74%), Gaps = 39/1180 (3%)

Query: 5    DNGFTDPTSLCDLGEEF--LKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSF 62
            D G  DP     + +    L+  C++A+ SFF E  LVSHQINSYN+F+ +GLQK FDS 
Sbjct: 104  DGGHADPPVQVPVDKRIASLEKLCKEASRSFFRETRLVSHQINSYNDFVSHGLQKMFDSL 163

Query: 63   GETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMF---PRHARLQNM 119
             E  VEP YDPSKK  G WR+A+++FG+V L++P F+  N   + +     P+HARLQ M
Sbjct: 164  DEVTVEPDYDPSKK-VGPWRHATIKFGRVELEEPVFWVDNCDLDVETLKLKPKHARLQKM 222

Query: 120  TYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCW 179
            TYSS+MKV++  QVY+  +  SDK KTG + YIQ++ +  ET  + IG++PVM       
Sbjct: 223  TYSSKMKVEMTVQVYSLHK--SDKAKTGEDPYIQRKDIMKETKWVTIGKLPVM------- 273

Query: 180  MKGVEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAY-KSENKRNRLI 238
                 + +C++D GGYF+IKG EKVFVA+EQ CL R+W+++S  W   Y +S+ +R ++ 
Sbjct: 274  -----ESECEYDFGGYFLIKGMEKVFVAEEQRCLSRIWINDSPTWEACYQRSQIRREKIS 328

Query: 239  VRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILN 298
            ++ V  +      G  KV+++YFL   IPIWI+FFALGVSSDKE  ++ID    D S+ N
Sbjct: 329  IKPVQSND-----GFRKVINLYFLGATIPIWIMFFALGVSSDKEAFDIIDIQECDASMAN 383

Query: 299  ILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKA 358
            I+ A+I ++  +C+ F++   A +Y+DKLI+ T FPP  S +E +  ++FP + G + KA
Sbjct: 384  IISATITESHEQCEGFQREGRASEYIDKLIRNTKFPPKGSFDEYIGRHMFPDVSGNRSKA 443

Query: 359  RFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRD 418
             FLGYMV+CLL A SG RK DNRDDFRNKRL+LA ELL+REL VHI HA+KRM K +QR 
Sbjct: 444  LFLGYMVRCLLLASSGNRKSDNRDDFRNKRLDLACELLQRELWVHIMHAQKRMVKVMQRH 503

Query: 419  LYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVD 478
            L GD  ++P+E Y+ ASI+TNGL+RAFSTG+W HPF + ER SGIVA L R NPLQ + D
Sbjct: 504  LSGDGDLQPLECYVHASIVTNGLNRAFSTGSWCHPFNKRERCSGIVATLRRTNPLQMMSD 563

Query: 479  LRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIF 538
            +R+TRQ V Y GK GDARYP+PS+WGK+CFLSTPDGE CG VKNL +T +VS    EP  
Sbjct: 564  MRKTRQWVAYAGKAGDARYPNPSYWGKLCFLSTPDGEKCGFVKNLAITAIVSCLAREPSV 623

Query: 539  EQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEI 598
            + L + GM+KL +     + GK ++F++G+ +GVC DS+ FV  LR  RRRK++  QVEI
Sbjct: 624  DALVSCGMKKLDELLLQEISGKDRIFLNGNLVGVCADSVEFVLHLRSMRRRKQIDAQVEI 683

Query: 599  KRDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEED 658
            KRD+   EVRIF D GRILRPLL+VEN+  I + +  +Y+FQ L+D  IIEL+G EEEED
Sbjct: 684  KRDKQNKEVRIFSDPGRILRPLLIVENLRNIMNRKNGSYSFQELMDQNIIELIGVEEEED 743

Query: 659  CCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSS 718
               A+GI++L    E+K    +THCELD SFLLGLSC IIPFANHD A+R+L Q++K S 
Sbjct: 744  IRCAYGIRHLFAGDEEKNFSFYTHCELDPSFLLGLSCSIIPFANHDTAKRILMQAEKISQ 803

Query: 719  QAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGY--GHNHILPRPELYNGQN 776
            QAIG+ TTNP  RVDT SHQL+YPQRPLF+T+ +DCLGK  Y  G  H   RPE +NGQN
Sbjct: 804  QAIGYSTTNPLFRVDTHSHQLYYPQRPLFKTVAADCLGKRDYTSGSKHDFARPEYFNGQN 863

Query: 777  AIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFG 836
            AIV+++VH G+NQEDSLV+NRASLERGMFR++H +SYKA ++NKE+  KR    + +NFG
Sbjct: 864  AIVSISVHQGFNQEDSLVLNRASLERGMFRTQHFKSYKALIENKEI-TKRLKHKENINFG 922

Query: 837  KIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSS 896
            K  SK G VDSLD DG P+IGA+LQS DI+IGK +DSG DHSIKL HTE+G+V+KVVLS+
Sbjct: 923  KTPSKKGLVDSLDIDGLPYIGASLQSNDIIIGKVSDSGEDHSIKLLHTEKGIVEKVVLSA 982

Query: 897  NDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHA 956
             DDG N + V+LRQ RSP +GDKF+SMHGQKGV+GFL+SQENFPFT QGIVPDIVINPH 
Sbjct: 983  TDDGTNSAFVTLRQTRSPRIGDKFASMHGQKGVIGFLDSQENFPFTHQGIVPDIVINPHG 1042

Query: 957  FPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTE 1016
            FP+RQTPGQLLEAALGKGI ALG     G  RYATPF +PSV+ ITEQLH+AGFS+WG E
Sbjct: 1043 FPTRQTPGQLLEAALGKGI-ALG-----GATRYATPFTSPSVEVITEQLHKAGFSRWGGE 1096

Query: 1017 RLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKF 1076
             + +GRTGE   S +F GPTFYQRL HM+EDKVKFRNTGPVHPLTRQPV DR+R+GG+KF
Sbjct: 1097 SVINGRTGERAASPVFTGPTFYQRLHHMAEDKVKFRNTGPVHPLTRQPVEDRRRYGGVKF 1156

Query: 1077 GEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVV----GGGRKVRGP 1132
            GEMERDCL+AHGAAANLHERLF LSD  ++H+CR+C+  A V+   V    GGGRKVRGP
Sbjct: 1157 GEMERDCLLAHGAAANLHERLFLLSDVSRLHVCRRCQRAAVVVSPAVAADGGGGRKVRGP 1216

Query: 1133 YCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTEF 1172
            YCR C S +++V+ +VPYGAK+L QELFSMGI LKFDTE 
Sbjct: 1217 YCRFCRSAEEVVRVSVPYGAKILYQELFSMGICLKFDTEL 1256


>gi|222629653|gb|EEE61785.1| hypothetical protein OsJ_16357 [Oryza sativa Japonica Group]
          Length = 1185

 Score = 1398 bits (3618), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 687/1165 (58%), Positives = 864/1165 (74%), Gaps = 63/1165 (5%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSK 75
            D+    L+ FC++A+ SFF+E GL+SHQINSYNEF+ +GLQ+ FDS GE  VEP YDPS 
Sbjct: 77   DMSIPSLEKFCKEASRSFFDEIGLISHQINSYNEFVSHGLQELFDSLGEVTVEPSYDPSN 136

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFA-GNGGDEHDMF--PRHARLQNMTYSSRMKVKVQFQ 132
            +G G WR+A ++FG+V L++P F++ G   DE  +   PRHARLQNMTYSS+MKV+V FQ
Sbjct: 137  RGPGGWRHAIIKFGRVQLEEPVFWSHGCDIDEQSLKLKPRHARLQNMTYSSKMKVEVHFQ 196

Query: 133  VYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCDFDH 192
            VY+ ++  SDK KTG +++  K  + +ET  I IGR+PVMV S+LCW+  +++ DC FD 
Sbjct: 197  VYSMEK--SDKAKTGNDKFGYKRNIINETYYINIGRLPVMVMSNLCWLHKLKESDCQFDS 254

Query: 193  GGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKG 252
            GGYF+IKG EKVF+AQEQ CL R+WV +   W V++ S  +R R+ ++L+D +  ED  G
Sbjct: 255  GGYFLIKGMEKVFIAQEQKCLTRIWVEDRPCWMVSFLSPIRRRRIYIKLIDSANNEDASG 314

Query: 253  GEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD 312
            G K++S+ FL   +PIW++FFALG+SSDK+I ++I+    D  ++N + A+I ++D  C+
Sbjct: 315  G-KIISISFLYANMPIWLMFFALGISSDKDIFDVINMEDCDACVINTITATIKESDELCE 373

Query: 313  EFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAY 372
             FRK   A +YVD+LIK + FPP E  ++ +  YLFPS+ G + KA FLGYMVKCLL A+
Sbjct: 374  GFRKSDKARQYVDELIKNSKFPPAEPFDDYIAKYLFPSISGNRNKALFLGYMVKCLLMAF 433

Query: 373  SGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYL 432
            +G+RKCDN+DDFRNKRL+LAGELL REL+ HI HA + M KALQRDL  +R ++  ++YL
Sbjct: 434  TGKRKCDNKDDFRNKRLDLAGELLGRELRAHIRHAERLMVKALQRDLNSERELQEFDHYL 493

Query: 433  DASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKV 492
            DASI+TNGL+RAFSTG+W HP+KR ER +GIVA L R NPLQ + DLR+TRQ+V Y GK 
Sbjct: 494  DASIITNGLNRAFSTGSWCHPYKRNERCAGIVATLRRTNPLQMISDLRKTRQRVAYAGKA 553

Query: 493  GDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFNSGMEKLADD 552
            GDARYP+PS+WGK+CF+STPDGENCGLVKNL VT  VS+ +  P+ ++  + GM KL + 
Sbjct: 554  GDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTATVSSRVAPPLIDRFISCGMNKLHEI 613

Query: 553  ASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMD 612
             +  +    K+F++GDW+G C D  SFV  LR  RR   +  QVEIKRD+ Q EVR+F D
Sbjct: 614  PTEEVPRMDKIFLNGDWVGSCSDPASFVLRLRCMRRSGLIDPQVEIKRDKHQREVRVFSD 673

Query: 613  AGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDI 672
            AGRILRPLLVVEN+ KI+  +G +Y+FQ L+   IIE +G EEEED  +AWGI+ L +  
Sbjct: 674  AGRILRPLLVVENLNKIRRPKGSSYSFQWLMQQEIIEFIGVEEEEDIRSAWGIRNLFESE 733

Query: 673  EDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRV 732
            E+                        P    + A  V    +K   +  G+         
Sbjct: 734  EEA-----------------------PMVKMNKAEDVFNVKRKIGGEVSGY--------- 761

Query: 733  DTLSHQLFYPQRPLFRTMISDCLGKPGY--GHNHILPRPELYNGQNAIVAVNVHLGYNQE 790
               +H            +I+DC+G+  Y  G      RPE +NGQNAIVAVNVH G+NQE
Sbjct: 762  ---TH------------LIADCIGRSEYTFGRKDDFARPEYFNGQNAIVAVNVHQGFNQE 806

Query: 791  DSLVMNRASLERGMFRSEHIRSYKAEVDNK--EMQVKRRSSDDMVNFGKIQSKIGRVDSL 848
            DSLVMNRASLERGMFR+EH R+YKAEV+NK      KR    D ++FGK+QSK GRVD+L
Sbjct: 807  DSLVMNRASLERGMFRTEHFRNYKAEVENKGGPGGNKRLKMKDKIDFGKMQSKRGRVDNL 866

Query: 849  DDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSL 908
            DDDG P++GA+LQSGDIVIGK ++SG DHSIKLKHTE+GMVQ+V+LS+ND+GKNF+VV+L
Sbjct: 867  DDDGLPYVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQRVLLSANDEGKNFAVVTL 926

Query: 909  RQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLE 968
            RQVRSPCLGDKFSSMHGQKGV+GFLESQENFPFT QGIVPDIVINPHAFP+RQTPGQLLE
Sbjct: 927  RQVRSPCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQLLE 986

Query: 969  AALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVR 1028
            AALGKGI ALG     G  RYATPF T S D IT+QLH+AGFS+WG E + +GRTGE + 
Sbjct: 987  AALGKGI-ALG-----GTMRYATPFTTASFDVITDQLHKAGFSRWGAESVLNGRTGERMH 1040

Query: 1029 SLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG 1088
            SLIF+GPTFYQRLIHM+EDKVKFRNTGPVHPLTRQPVADRKRFGG+KFGEMERDCL+AHG
Sbjct: 1041 SLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHG 1100

Query: 1089 AAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANV 1148
            AAANLHERLF LSD  QMH+C+ C+ VANVI R V GG+K+RGPYC  C S ++IV+ NV
Sbjct: 1101 AAANLHERLFMLSDFSQMHVCQTCERVANVIMRPVPGGKKIRGPYCGFCRSSENIVRINV 1160

Query: 1149 PYGAKLLCQELFSMGITLKFDTEFC 1173
            PYGAKLL QELFSMGI L+F+TE C
Sbjct: 1161 PYGAKLLYQELFSMGICLRFETEVC 1185


>gi|242080725|ref|XP_002445131.1| hypothetical protein SORBIDRAFT_07g004600 [Sorghum bicolor]
 gi|241941481|gb|EES14626.1| hypothetical protein SORBIDRAFT_07g004600 [Sorghum bicolor]
          Length = 1251

 Score = 1385 bits (3585), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 681/1159 (58%), Positives = 867/1159 (74%), Gaps = 23/1159 (1%)

Query: 22   LKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW 81
            L+ FCR+A+ SFF+  GLVSHQINSYN+F+ +GLQ  FDS GE  VEP YDPS K  G W
Sbjct: 107  LEKFCREASRSFFSATGLVSHQINSYNQFVSHGLQDLFDSLGEITVEPDYDPSNKS-GAW 165

Query: 82   RYASMRFGQVTLDKPSFFAGNGGDEHDMF---PRHARLQNMTYSSRMKVKVQFQVYTQKR 138
            ++A+++FG+V L +P F   N   E       PRHARLQ MTY+SRM V++  QVY   +
Sbjct: 166  KHATIKFGRVELSEPVFMVDNLDLEQQDLKFKPRHARLQRMTYASRMNVEMTAQVYILDK 225

Query: 139  VTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCDFDHGGYFII 198
              SDK KTG++ ++ +  +  ET  + +G +PVMVKS+LCW+  +++ DC FD GGYF+I
Sbjct: 226  --SDKAKTGKDTHVHRREIMTETKQVSMGLLPVMVKSNLCWLHKLQESDCQFDFGGYFLI 283

Query: 199  KGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLS 258
            KG EKVF+A+EQ  L R+W+++   W  +Y S+ KR ++ ++LV   + E  K    V++
Sbjct: 284  KGTEKVFIAEEQRFLSRIWITDYPSWDASYLSQIKREKINIKLVPSKRNESCK----VIT 339

Query: 259  VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGR 318
            +YF+ T IPIW++FFALGVSSDKE  ++ID    D SI+NI+ ++I ++  + + FR   
Sbjct: 340  IYFMGTIIPIWVVFFALGVSSDKEAFDMIDILDCDASIVNIISSTIKESHEEFEGFRAPG 399

Query: 319  NALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKC 378
             A +YVDKLI+ + FPP ES +E +  Y+FPS++G + KA FLGYMVKCLL AYSG RKC
Sbjct: 400  RACQYVDKLIRKSKFPPKESFDEYVCRYMFPSVNGVRSKALFLGYMVKCLLMAYSGNRKC 459

Query: 379  DNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILT 438
            DN+DDFRNKRL LA +LL REL  HI  A  RM K +QRDL  D  ++ +  Y+DASI+T
Sbjct: 460  DNKDDFRNKRLGLACQLLRRELWTHIKRAEWRMVKLMQRDLSNDGNLQDLRRYVDASIIT 519

Query: 439  NGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYP 498
            NGL+RAFSTG+W HP+ +  R SG+VA L R NPLQ + DLR+TRQ V Y+G VGDARYP
Sbjct: 520  NGLNRAFSTGSWRHPYLKA-RCSGVVATLRRTNPLQMMSDLRKTRQWVAYSGAVGDARYP 578

Query: 499  HPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFNSGMEKLADDASYSLG 558
            +PS WGK+CFLSTPDGE CG VKNL VT +VS+ + +P+ +   + GM+KL D +   + 
Sbjct: 579  NPSFWGKLCFLSTPDGEKCGFVKNLAVTAVVSSVVRKPLIDTFVSCGMKKLDDISLQDIS 638

Query: 559  GKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILR 618
            GK ++F++G  +GVC D       LR  RR K +  QVEIKRD+   EVR+  D GRILR
Sbjct: 639  GKDRIFLNGSLLGVCADPHELTLRLRSLRRSKLIDPQVEIKRDKHHKEVRVLCDPGRILR 698

Query: 619  PLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPI 678
            PLLVVEN+ +I   +   Y+FQ L+D  I+EL+G EEEED   A GI++L    ++ +  
Sbjct: 699  PLLVVENLRRITRPKDGLYSFQELIDQNIVELIGVEEEEDIQCASGIRHLFSGEKEDRSS 758

Query: 679  KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQ 738
             +THCELD SFLLGLSC +IPFANHD+ +RVL Q++K S QAIG+  TN   R+DTLSHQ
Sbjct: 759  GYTHCELDPSFLLGLSCSLIPFANHDNGKRVLMQAEKISQQAIGYSPTNSHTRLDTLSHQ 818

Query: 739  LFYPQRPLFRTMISDCLGKP----GYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLV 794
            +FYPQRPLF+T++S  LGK      +G       PE +NGQNAIV++NVH G+NQEDSLV
Sbjct: 819  IFYPQRPLFKTVVSYGLGKAETAYSFGRKDDFNTPEYFNGQNAIVSINVHQGFNQEDSLV 878

Query: 795  MNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFP 854
            +NRASLERGMFR+ H++SYKA+V+NKE+  +R    + +NFGK+QSK G+VDSLD +G P
Sbjct: 879  LNRASLERGMFRTLHLKSYKAQVENKEI-TRRLKHRESINFGKVQSKRGKVDSLDSEGLP 937

Query: 855  FIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSP 914
            ++GA+LQSGDIVIGK ++SG DHS KL HTE+GMV KVVLS+NDDG NF+ V+LRQ RSP
Sbjct: 938  YVGASLQSGDIVIGKVSESGEDHSAKLMHTEKGMVDKVVLSANDDGVNFATVTLRQSRSP 997

Query: 915  CLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKG 974
            C+GDKF+SMHGQKGV+G L+SQENFPFT QGIVPDIVINPH FP+RQTPGQLLEAALGKG
Sbjct: 998  CVGDKFASMHGQKGVVGLLDSQENFPFTCQGIVPDIVINPHGFPTRQTPGQLLEAALGKG 1057

Query: 975  IAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIG 1034
            IA  GK       RYATPF TP+VD ITEQLH+AGFS+WG E + +G+TGE ++SL+F+G
Sbjct: 1058 IAMGGK------VRYATPFTTPTVDVITEQLHKAGFSRWGEESVLNGQTGERMKSLVFMG 1111

Query: 1035 PTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLH 1094
            PTFYQRL+HM+EDKVKFRNTGPVHP+TRQPV D+KRFGG+KFGEMERDC++AHGAAANLH
Sbjct: 1112 PTFYQRLVHMAEDKVKFRNTGPVHPVTRQPVEDKKRFGGVKFGEMERDCMLAHGAAANLH 1171

Query: 1095 ERLFTLSDSYQMHICRKCKNVANVIQRVV-GGGRKVRGPYCRICDSGDDIVKANVPYGAK 1153
            ERLFTLSD  QMHIC+ C+ VANVI R   GG +KV GPYC  C S + IV+ NVPYG+K
Sbjct: 1172 ERLFTLSDFSQMHICQACQRVANVIMRPAEGGSKKVHGPYCMFCRSAERIVRVNVPYGSK 1231

Query: 1154 LLCQELFSMGITLKFDTEF 1172
            LL QELF MGI LKFDTE 
Sbjct: 1232 LLYQELFCMGICLKFDTEI 1250


>gi|40253865|dbj|BAD05800.1| putative DNA-dependent RNA polymerase II [Oryza sativa Japonica
            Group]
          Length = 1136

 Score = 1374 bits (3557), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 682/1177 (57%), Positives = 862/1177 (73%), Gaps = 63/1177 (5%)

Query: 5    DNGFTDPTSLCDLGEEF--LKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSF 62
            D G  DP     + +    L+  C++A+ SFF E  LVSHQINSYN+F+ +GLQK FDS 
Sbjct: 13   DGGHADPPVQVPVDKRIASLEKLCKEASRSFFRETRLVSHQINSYNDFVSHGLQKMFDSL 72

Query: 63   GETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYS 122
             E  VEP YDPSKK  G WR+A+++FG+V L                             
Sbjct: 73   DEVTVEPDYDPSKK-VGPWRHATIKFGRVEL----------------------------- 102

Query: 123  SRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG 182
                      VY+  +  SDK KTG + YIQ++ +  ET  + IG++PVMVKS+LCW+  
Sbjct: 103  ----------VYSLHK--SDKAKTGEDPYIQRKDIMKETKWVTIGKLPVMVKSNLCWLHK 150

Query: 183  VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAY-KSENKRNRLIVRL 241
            +++ +C++D GGYF+IKG EKVFVA+EQ CL R+W+++S  W   Y +S+ +R ++ ++ 
Sbjct: 151  LQESECEYDFGGYFLIKGMEKVFVAEEQRCLSRIWINDSPTWEACYQRSQIRREKISIKP 210

Query: 242  VDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILF 301
            V  +      G  KV+++YFL   IPIWI+FFALGVSSDKE  ++ID    D S+ NI+ 
Sbjct: 211  VQSND-----GFRKVINLYFLGATIPIWIMFFALGVSSDKEAFDIIDIQECDASMANIIS 265

Query: 302  ASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFL 361
            A+I ++  +C+ F++   A +Y+DKLI+ T FPP  S +E +  ++FP + G + KA FL
Sbjct: 266  ATITESHEQCEGFQREGRASEYIDKLIRNTKFPPKGSFDEYIGRHMFPDVSGNRSKALFL 325

Query: 362  GYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYG 421
            GYMV+CLL A SG RK DNRDDFRNKRL+LA ELL+REL VHI HA+KRM K +QR L G
Sbjct: 326  GYMVRCLLLASSGNRKSDNRDDFRNKRLDLACELLQRELWVHIMHAQKRMVKVMQRHLSG 385

Query: 422  DRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRR 481
            D  ++P+E Y+ ASI+TNGL+RAFSTG+W HPF + ER SGIVA L R NPLQ + D+R+
Sbjct: 386  DGDLQPLECYVHASIVTNGLNRAFSTGSWCHPFNKRERCSGIVATLRRTNPLQMMSDMRK 445

Query: 482  TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQL 541
            TRQ V Y GK GDARYP+PS+WGK+CFLSTPDGE CG VKNL +T +VS    EP  + L
Sbjct: 446  TRQWVAYAGKAGDARYPNPSYWGKLCFLSTPDGEKCGFVKNLAITAIVSCLAREPSVDAL 505

Query: 542  FNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
             + GM+KL +     + GK ++F++G+ +GVC DS+ FV  LR  RRRK++  QVEIKRD
Sbjct: 506  VSCGMKKLDELLLQEISGKDRIFLNGNLVGVCADSVEFVLHLRSMRRRKQIDAQVEIKRD 565

Query: 602  ELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCT 661
            +   EVRIF D GRILRPLL+VEN+  I + +  +Y+FQ L+D  IIEL+G EEEED   
Sbjct: 566  KQNKEVRIFSDPGRILRPLLIVENLRNIMNRKNGSYSFQELMDQNIIELIGVEEEEDIRC 625

Query: 662  AWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAI 721
            A+GI++L    E+K    +THCELD SFLLGLSC IIPFANHD A+R+L Q++K S QAI
Sbjct: 626  AYGIRHLFAGDEEKNFSFYTHCELDPSFLLGLSCSIIPFANHDTAKRILMQAEKISQQAI 685

Query: 722  GFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGY--GHNHILPRPELYNGQNAIV 779
            G+ TTNP  RVDT SHQL+YPQRPLF+T+ +DCLGK  Y  G  H   RPE +NGQNAIV
Sbjct: 686  GYSTTNPLFRVDTHSHQLYYPQRPLFKTVAADCLGKRDYTSGSKHDFARPEYFNGQNAIV 745

Query: 780  AVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQ 839
            +++VH G+NQEDSLV+NRASLERGMFR++H +SYKA ++NKE+  KR    + +NFGK  
Sbjct: 746  SISVHQGFNQEDSLVLNRASLERGMFRTQHFKSYKALIENKEI-TKRLKHKENINFGKTP 804

Query: 840  SKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDD 899
            SK G VDSLD DG P+IGA+LQS DI+IGK +DSG DHSIKL HTE+G+V+KVVLS+ DD
Sbjct: 805  SKKGLVDSLDIDGLPYIGASLQSNDIIIGKVSDSGEDHSIKLLHTEKGIVEKVVLSATDD 864

Query: 900  GKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPS 959
            G N + V+LRQ RSP +GDKF+SMHGQKGV+GFL+SQENFPFT QGIVPDIVINPH FP+
Sbjct: 865  GTNSAFVTLRQTRSPRIGDKFASMHGQKGVIGFLDSQENFPFTHQGIVPDIVINPHGFPT 924

Query: 960  RQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLY 1019
            RQTPGQLLEAALGKGI ALG     G  RYATPF +PSV+ ITEQLH+AGFS+WG E + 
Sbjct: 925  RQTPGQLLEAALGKGI-ALG-----GATRYATPFTSPSVEVITEQLHKAGFSRWGGESVI 978

Query: 1020 DGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEM 1079
            +GRTGE   S +F GPTFYQRL HM+EDKVKFRNTGPVHPLTRQPV DR+R+GG+KFGEM
Sbjct: 979  NGRTGERAASPVFTGPTFYQRLHHMAEDKVKFRNTGPVHPLTRQPVEDRRRYGGVKFGEM 1038

Query: 1080 ERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVV----GGGRKVRGPYCR 1135
            ERDCL+AHGAAANLHERLF LSD  ++H+CR+C+  A V+   V    GGGRKVRGPYCR
Sbjct: 1039 ERDCLLAHGAAANLHERLFLLSDVSRLHVCRRCQRAAVVVSPAVAADGGGGRKVRGPYCR 1098

Query: 1136 ICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTEF 1172
             C S +++V+ +VPYGAK+L QELFSMGI LKFDTE 
Sbjct: 1099 FCRSAEEVVRVSVPYGAKILYQELFSMGICLKFDTEL 1135


>gi|413917248|gb|AFW57180.1| putative DNA-directed RNA polymerase subunit family protein [Zea
            mays]
          Length = 1259

 Score = 1373 bits (3553), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 682/1167 (58%), Positives = 867/1167 (74%), Gaps = 26/1167 (2%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSK 75
            D     L+ FC++AA SFF+E GLVSHQINSY+ F+ +GLQ+ FDS GE  VEP YDPS 
Sbjct: 106  DFNVASLEKFCKEAARSFFSETGLVSHQINSYDHFVSHGLQELFDSLGEITVEPDYDPSN 165

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFAGNGG-DEHDMF--PRHARLQNMTYSSRMKVKVQFQ 132
            K  G W++A+++FG+V LD+P F   N   +E D+   PRHARLQ MTY+SRM V++  Q
Sbjct: 166  K-HGAWKHATVKFGRVKLDEPVFMLENSDLEEQDLKFKPRHARLQKMTYASRMNVEMTVQ 224

Query: 133  VYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCDFDH 192
            VY     TSDK KTG++ ++ K  +  ET  I IG +PVMVKS+LCW+   +KGDC FD 
Sbjct: 225  VYIFD--TSDKAKTGKDTHVHKREIMTETKQINIGLLPVMVKSNLCWLHKSQKGDCPFDF 282

Query: 193  GGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKG 252
            GGYF+IKG EKVF+A+EQ  L R+WV++   W  +Y S+ +R ++ ++LV     E  K 
Sbjct: 283  GGYFLIKGTEKVFIAEEQRFLSRIWVTDHPSWDASYLSQIRREKINIKLVPSKSNESCK- 341

Query: 253  GEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD 312
               V+++ F+ T +PIW+ FFALGVSSDKE  ++ID    D  I+NI+  +I ++  + +
Sbjct: 342  ---VINICFMGTIMPIWVAFFALGVSSDKEAFDMIDILDCDADIVNIISLTIKESHEEFE 398

Query: 313  EFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAY 372
             FR    A +YVD+LI+ + FPP ES +E +  Y+FP ++G + KA FLGYMVKCLL AY
Sbjct: 399  GFRTPGRARQYVDELIRKSKFPPKESFDEYVCRYMFPGVNGFRSKALFLGYMVKCLLMAY 458

Query: 373  SGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYL 432
            SG RKCDN+DD RNKRL+L+ +LL REL  HI  A +RM K +QRDL  D  ++ +  Y+
Sbjct: 459  SGNRKCDNKDDLRNKRLDLSCQLLRRELWTHIKRAERRMVKLMQRDLSNDGNLQDLRRYV 518

Query: 433  DASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKV 492
            DASI+TNGL+RAFSTG+W HP+K+ ER SG+VA L R NPLQ + D+R+TRQ   Y G  
Sbjct: 519  DASIITNGLNRAFSTGSWRHPYKK-ERCSGVVATLRRTNPLQMMSDVRKTRQWFAYAGTA 577

Query: 493  GDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFNSGMEKLADD 552
            GDARYP+PS+WGK+CFLSTPD E CG VKNL VT +VS+ + +P+ +   + GM+KL D 
Sbjct: 578  GDARYPNPSYWGKLCFLSTPDAEKCGFVKNLAVTAVVSSVVRKPLIDTFVSCGMKKLDDI 637

Query: 553  ASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMD 612
            +   + GK ++F++G  +GVC D       LR  RR K +  QVEIKRD+   EVR+F D
Sbjct: 638  SLQDISGKDRIFLNGSLLGVCADPHELTLRLRSLRRSKLIDPQVEIKRDKHHKEVRVFSD 697

Query: 613  AGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLL--K 670
             GRI+RPLLVVEN+ +I   +   Y+FQ L+D  I+EL+G EEEED   A+GI++L   +
Sbjct: 698  PGRIMRPLLVVENLRRITRPKDGLYSFQELIDQNIVELIGVEEEEDIQCAYGIRHLFSSR 757

Query: 671  DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSI 730
            + ED     +THCELD SFLLGLSC +IPF NHD+ARRV  Q++K S QAIG+  TN   
Sbjct: 758  EKEDWSSSGYTHCELDPSFLLGLSCSLIPFGNHDNARRVQMQAEKISQQAIGYSPTNSQY 817

Query: 731  RVDTLSHQLFYPQRPLFRTMISDCLGKP----GYGHNHILPRPELYNGQNAIVAVNVHLG 786
            R+DTLSHQ+FYPQRPLFRT++S  LG+       G       PE +NGQNAIV+VNVH G
Sbjct: 818  RLDTLSHQMFYPQRPLFRTVVSYGLGEAKTDCSSGRKDDFNTPEYFNGQNAIVSVNVHQG 877

Query: 787  YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVD 846
            +NQEDSLVMNRASLERGMFR+ H +SYKA+V+NKE+  +R    + +NFGK+QSK G+VD
Sbjct: 878  FNQEDSLVMNRASLERGMFRTLHFKSYKAQVENKEI-TRRLKHRENINFGKVQSKRGKVD 936

Query: 847  SLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVV 906
            SLD DG P++GA+LQSGDIVIGK  +SG DHS KL HTE+GMV KVVLS+NDDG NF+ V
Sbjct: 937  SLDSDGLPYVGASLQSGDIVIGKVTESGEDHSAKLMHTEKGMVDKVVLSANDDGVNFATV 996

Query: 907  SLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQL 966
            +LRQ RSPC+GDKF+SMHGQKGV+G L+SQENFPFT QGIVPD+VINPH FP+RQTPGQL
Sbjct: 997  TLRQSRSPCVGDKFASMHGQKGVVGLLDSQENFPFTSQGIVPDMVINPHGFPTRQTPGQL 1056

Query: 967  LEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEM 1026
            LEAALGKGIA  GK       RYATPF TP+V+ I EQLH+AGF +WG E + +G+TGE 
Sbjct: 1057 LEAALGKGIALGGK------VRYATPFTTPTVEVIAEQLHKAGFCRWGEESVLNGQTGER 1110

Query: 1027 VRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIA 1086
            ++SL+F+GPTFYQRL+HM+EDKVKFRNTGPVHPLTRQPV D+KRFGG+KFGEMERDC++A
Sbjct: 1111 MKSLVFMGPTFYQRLVHMAEDKVKFRNTGPVHPLTRQPVEDKKRFGGVKFGEMERDCMLA 1170

Query: 1087 HGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVV--GGGRKVRGPYCRICDSGDDIV 1144
            HGAAANLHERLFTLSD  +MHIC+ C+ VANVI R    GGG+KVRGPYC  C S + +V
Sbjct: 1171 HGAAANLHERLFTLSDFSRMHICQACERVANVIVRAAEGGGGKKVRGPYCLFCRSAERVV 1230

Query: 1145 KANVPYGAKLLCQELFSMGITLKFDTE 1171
            + +VPYG+KLL QELFSMGI LKF+TE
Sbjct: 1231 RVDVPYGSKLLYQELFSMGICLKFETE 1257


>gi|218195684|gb|EEC78111.1| hypothetical protein OsI_17620 [Oryza sativa Indica Group]
          Length = 1177

 Score = 1350 bits (3494), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 669/1163 (57%), Positives = 845/1163 (72%), Gaps = 67/1163 (5%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSK 75
            D+    L+ FC++A+ SFF+E GL+SHQINSYNEF+ +GLQ+ FDS GE  VEP YDPS 
Sbjct: 77   DMSIPSLEKFCKEASRSFFDEIGLISHQINSYNEFVSHGLQELFDSLGEVTVEPSYDPSN 136

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFA-GNGGDEHDMF--PRHARLQNMTYSSRMKVKVQFQ 132
            +G G WR+A ++FG+V L++P F++ G   DE  +   PRHARLQNMTYSS+MKV+V FQ
Sbjct: 137  RGPGGWRHAIIKFGRVQLEEPVFWSHGCDIDEQSLKLKPRHARLQNMTYSSKMKVEVHFQ 196

Query: 133  VYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCDFDH 192
            VY+ ++  SDK KTG +++  K  + +ET  I IGR+PVMV S+LCW+  +++ DC FD 
Sbjct: 197  VYSMEK--SDKAKTGNDKFGYKRNIINETYYINIGRLPVMVMSNLCWLHKLKESDCQFDS 254

Query: 193  GGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKG 252
            GGYF+IKG EKVF+AQEQ CL R+WV +   W V++ S  +R R+ ++L+D +  ED  G
Sbjct: 255  GGYFLIKGMEKVFIAQEQKCLTRIWVEDRPCWMVSFLSPIRRRRIYIKLIDSANNEDASG 314

Query: 253  GEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD 312
            G K++S+ FL   +PIW++FFALG+SSDK+I ++I+    D  ++N + A+I ++D  C+
Sbjct: 315  G-KIISISFLYANMPIWLMFFALGISSDKDIFDVINMEDCDACVINTITATIKESDELCE 373

Query: 313  EFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAY 372
             FRK   A +YVD+LIK + FPP E  ++ +  YLFPS+ G + KA FLGYMVKCLL A+
Sbjct: 374  GFRKSDKARQYVDELIKNSKFPPAEPFDDYIAKYLFPSISGNRNKALFLGYMVKCLLMAF 433

Query: 373  SGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYL 432
            +G+RKCDN+DDFRNKRL+LAGELL REL+ HI HA + M KALQRDL  +R ++  ++YL
Sbjct: 434  TGKRKCDNKDDFRNKRLDLAGELLGRELRAHIRHAERLMVKALQRDLNSERELQEFDHYL 493

Query: 433  DASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKV 492
            DASI+TNGL+RAFSTG+W HP+KR ER +GIVA L R NPLQ + DLR+TRQ+V Y GK 
Sbjct: 494  DASIITNGLNRAFSTGSWCHPYKRNERCAGIVATLRRTNPLQMISDLRKTRQRVAYAGKA 553

Query: 493  GDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFNSGMEKLADD 552
            GDARYP+PS+WGK+CF+STPDGENCGLVKNL VT  VS+ +  P+ ++  + GM KL + 
Sbjct: 554  GDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTATVSSRVAPPLIDRFISCGMNKLHEI 613

Query: 553  ASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMD 612
             +  +    K+F++GDW+G C D  SFV  LR  RR   +  QVEIK D+ Q EVR+F D
Sbjct: 614  PTEEVPRMDKIFLNGDWVGSCSDPASFVLRLRCMRRSGLIDPQVEIKWDKHQREVRVFSD 673

Query: 613  AGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDI 672
            AGRILRPLLVVEN+ KI+  +G +Y+FQ L+   IIE +G EEEED  +AWGI+ L +  
Sbjct: 674  AGRILRPLLVVENLNKIRRPKGSSYSFQWLMQQEIIEFIGVEEEEDIRSAWGIRNLFESE 733

Query: 673  EDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRV 732
            E+                        P    + A  V    +K   +  G+      +  
Sbjct: 734  EEA-----------------------PMVKMNKAEDVFNVKRKIGGEVSGYTHYQNIL-- 768

Query: 733  DTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDS 792
              L  ++  P + +        + K  YG                        G NQEDS
Sbjct: 769  --LGERMTLPDQSI-------SMAKMQYGSE-------------------CSSGVNQEDS 800

Query: 793  LVMNRASLERGMFRSEHIRSYKAEVDNK--EMQVKRRSSDDMVNFGKIQSKIGRVDSLDD 850
            LVMNRASLERGMFR+EH R+YKAEV+NK      KR    D ++FGK+QSK GRVD+LDD
Sbjct: 801  LVMNRASLERGMFRTEHFRNYKAEVENKGGPGGNKRLKMKDKIDFGKMQSKRGRVDNLDD 860

Query: 851  DGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQ 910
            DG P++GA+LQSGDIVIGK ++SG DHSIKLKHTE+GMVQ+V+LS+ND+GKNF+VV+LRQ
Sbjct: 861  DGLPYVGASLQSGDIVIGKVSESGEDHSIKLKHTEKGMVQRVLLSANDEGKNFAVVTLRQ 920

Query: 911  VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA 970
            VRSPCLGDKFSSMHGQKGV+GFLESQENFPFT QGIVPDIVINPHAFP+RQTPGQLLEAA
Sbjct: 921  VRSPCLGDKFSSMHGQKGVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQLLEAA 980

Query: 971  LGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSL 1030
            LGKGIA LG     G  RYATPF T S D IT+QLH+AGFS+WG E + +GRTGE + SL
Sbjct: 981  LGKGIA-LG-----GTMRYATPFTTASFDVITDQLHKAGFSRWGAESVLNGRTGERMHSL 1034

Query: 1031 IFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAA 1090
            IF+GPTFYQRLIHM+EDKVKFRNTGPVHPLTRQPVADRKRFGG+KFGEMERDCL+AHGAA
Sbjct: 1035 IFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAA 1094

Query: 1091 ANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPY 1150
            ANLHERLF LSD  QMH+C+ C+ VANVI R V GG+K+RGPYC  C S ++IV+ NVPY
Sbjct: 1095 ANLHERLFMLSDFSQMHVCQTCERVANVIMRPVPGGKKIRGPYCGFCRSSENIVRINVPY 1154

Query: 1151 GAKLLCQELFSMGITLKFDTEFC 1173
            GAKLL QELFSMGI L+F+TE C
Sbjct: 1155 GAKLLYQELFSMGICLRFETEVC 1177


>gi|67515342|gb|AAY68200.1| RNA polymerase IV second largest subunit [Antirrhinum majus]
          Length = 821

 Score = 1340 bits (3469), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 641/822 (77%), Positives = 715/822 (86%), Gaps = 11/822 (1%)

Query: 356  QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKAL 415
            QKAR LGYMVKCLL+AY GRRK DNRDDFRNKRLELAGELLEREL+VHI HA +RM KA+
Sbjct: 7    QKARLLGYMVKCLLEAYRGRRKVDNRDDFRNKRLELAGELLERELRVHIKHAERRMTKAM 66

Query: 416  QRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQT 475
            QRDLY DR ++ I+ YLDASI+TNGLSRAFSTGAWSHP+KR ERISG+VA L R NPLQT
Sbjct: 67   QRDLYRDREIQSIDSYLDASIITNGLSRAFSTGAWSHPYKRMERISGVVATLRRTNPLQT 126

Query: 476  LVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE 535
            + D+R+TRQQV YTG+VGDARYPHPSHWGKICFLSTPDGENCGLVKNL   GLVST++LE
Sbjct: 127  MADMRKTRQQVSYTGRVGDARYPHPSHWGKICFLSTPDGENCGLVKNLASMGLVSTNVLE 186

Query: 536  --PIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELP 593
               +  Q    GMEKL DD S  L GK K F+DG+W+G+CKDS SFV++LRRKRR  E+P
Sbjct: 187  QESLLRQFHVCGMEKLVDDTSSVLEGKHKAFLDGEWVGMCKDSKSFVAKLRRKRRMMEMP 246

Query: 594  TQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGT 653
             QVEIKRD    EVRIF DAGRILRPLL+V+ + KIK L+G+ ++FQ+LLD+GI+E +G 
Sbjct: 247  YQVEIKRDVRHREVRIFADAGRILRPLLLVQKLKKIKELKGE-FSFQSLLDNGIVEFIGA 305

Query: 654  EEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQS 713
            EEEEDC TAWGIKYL    ++K  +K+THCELD SFLLGLSCG+IPFANHDHARRVLYQS
Sbjct: 306  EEEEDCRTAWGIKYLFSADKEKPLVKYTHCELDCSFLLGLSCGLIPFANHDHARRVLYQS 365

Query: 714  QKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNH--ILPRPEL 771
            +KHS QAIGF TTNPSIRVDT SH L+YPQRP+F TM+SD LGK  Y  +H  +LP PE 
Sbjct: 366  EKHSQQAIGFSTTNPSIRVDTNSHNLYYPQRPIFGTMLSDSLGKSKYSSHHKGMLPHPEF 425

Query: 772  YNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDD 831
            +NGQ AIVAVNVHLGYNQEDS+VMNRAS+ERGMFR+EH+RSYKAEVDN +   K+   DD
Sbjct: 426  FNGQCAIVAVNVHLGYNQEDSIVMNRASMERGMFRTEHVRSYKAEVDNSDAPGKKLKPDD 485

Query: 832  MVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQK 891
            +V+FGK +SKIGRVDSLDDDGFPFIGANLQ+GDIVIGK+A SG DHSIKLKHTERGMVQK
Sbjct: 486  LVDFGKTESKIGRVDSLDDDGFPFIGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQK 545

Query: 892  VVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIV 951
            VVLSSNDDGKNF VVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT +GIVPDIV
Sbjct: 546  VVLSSNDDGKNFGVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKEGIVPDIV 605

Query: 952  INPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFS 1011
            INPHAFPSRQTPGQLLEAALGKGI ALG     G  +YATPF+TPSVD IT QLHR GFS
Sbjct: 606  INPHAFPSRQTPGQLLEAALGKGI-ALG-----GALKYATPFSTPSVDDITAQLHRLGFS 659

Query: 1012 KWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRF 1071
            +WG ER+YDGRTGE V SLIF+GPTFYQRL HM+EDK+KFRNTGPVHPLTRQPVADRKRF
Sbjct: 660  RWGDERVYDGRTGEKVESLIFMGPTFYQRLTHMAEDKIKFRNTGPVHPLTRQPVADRKRF 719

Query: 1072 GGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRG 1131
            GGIKFGEMERDCLIAHGAAANLHERLFTLSDS QMH+CRKC+N+ANVIQR V GGRK+RG
Sbjct: 720  GGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMHVCRKCQNMANVIQRSVFGGRKIRG 779

Query: 1132 PYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTEFC 1173
            PYCR CDS +D+V+ NVPYGAKLLCQELFSMGI+LKFDTE C
Sbjct: 780  PYCRFCDSVEDVVRLNVPYGAKLLCQELFSMGISLKFDTELC 821


>gi|283443702|gb|ADB19860.1| mutant required to maintain repression 7-3/RNA polymerase D second
            largest subunit 2-3 [Zea mays]
          Length = 1094

 Score = 1324 bits (3427), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 626/1027 (60%), Positives = 804/1027 (78%), Gaps = 17/1027 (1%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSK 75
            D+  E L+ FC++A+ SFF+E GL+SHQINSYNEF+ +GLQ+ FDS GE IVEPGYDPSK
Sbjct: 81   DMSVESLEKFCKEASRSFFDEVGLISHQINSYNEFVSHGLQELFDSLGEVIVEPGYDPSK 140

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT 135
            KG G W++A ++FG+V L+KP F+ G      D  P HARLQNMTY+SR+ V+V  QVY+
Sbjct: 141  KGSGGWKHAIIKFGRVKLEKPVFWTGKDEGSVDFKPWHARLQNMTYASRLIVEVTIQVYS 200

Query: 136  QKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCDFDHGGY 195
             ++  SDK KTG + ++QK    +ET  I IG +PVMVKS+LC +  + + +C FD GGY
Sbjct: 201  LEK--SDKSKTGNDGFVQKRNFMNETHWIFIGLLPVMVKSNLCLLHSLNESECLFDAGGY 258

Query: 196  FIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEK 255
            F++KG EKVF+AQEQ CL+RLW+S+   WT+++ SE KR R+ ++LV+ ++ ED     K
Sbjct: 259  FLVKGMEKVFIAQEQRCLRRLWISDRPCWTISFMSEIKRRRIYIKLVESTRSEDFSES-K 317

Query: 256  VLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFR 315
            ++++ FL   +P+W+LFFALG+SSDKE+ ++ID    D S++N + A+I ++D  C++FR
Sbjct: 318  IITISFLYATMPVWLLFFALGISSDKEVFDMIDMQDCDASVINTISATIKESDKLCEDFR 377

Query: 316  KGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGR 375
            K   A +YVD+L+K + FPP ES ++ +  +LFP + G + KA FLGYMVKCLL A++G+
Sbjct: 378  KSDKARQYVDELVKSSRFPPAESFDDYIARFLFPDISGNRNKALFLGYMVKCLLMAFTGK 437

Query: 376  RKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDAS 435
            RKCDN+DDFRNKRL+L GELL REL+  +  A KRM KA+QRDL  DR ++ +E Y+DAS
Sbjct: 438  RKCDNKDDFRNKRLDLPGELLGRELRAQLRLAEKRMVKAIQRDLNSDRELQDLERYIDAS 497

Query: 436  ILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDA 495
            I+TNGL+RAFSTG+W HP+KR ER SGIVA L R NPLQ + DLR+TRQ+V Y GK GDA
Sbjct: 498  IVTNGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQMMSDLRKTRQRVAYAGKAGDA 557

Query: 496  RYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFNSGMEKLADDASY 555
            RYP+PS+WGK+CF+STPDGENCGLVKNL VT +VS+ +++P+ E   + GM KL D  + 
Sbjct: 558  RYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSRVMQPLIESFISCGMSKLNDIPTE 617

Query: 556  SLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGR 615
             +    K+F++G+W+G C++S SFV  LR  RR   +  QVEIKRD+  +EVR+F DAGR
Sbjct: 618  HIQRMDKIFLNGNWVGSCENSASFVFRLRCMRRSSLIDPQVEIKRDKHHNEVRVFTDAGR 677

Query: 616  ILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDK 675
            ILRPLLVVEN+ KI+  +G++++F  L+   IIE +G EEEED   AWGI++L    E +
Sbjct: 678  ILRPLLVVENLNKIRKPKGRSFSFHELMQQEIIEFIGVEEEEDIQCAWGIRHLF---ESE 734

Query: 676  KPI-KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDT 734
              I  +THCELD SFLLGLSCGIIPFANH+ ARRVLYQS+KHS QAIG+ TTNP IRVDT
Sbjct: 735  GAISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDT 794

Query: 735  LSHQLFYPQRPLFRTMISDCLGKPGY---GHNHILPRPELYNGQNAIVAVNVHLGYNQED 791
            LSHQL+YPQRPLF+T+I+DCLG+  Y   G  +   RPE +NGQNAIVAVNVH G+NQED
Sbjct: 795  LSHQLYYPQRPLFKTVIADCLGRSDYASFGRKNDFARPEYFNGQNAIVAVNVHQGFNQED 854

Query: 792  SLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDD 851
            SLVMNRASLERGMFR+EH+RSYKA+V+NK+   KR    + ++FGK +SK GRVD+LDDD
Sbjct: 855  SLVMNRASLERGMFRTEHLRSYKADVENKD-GTKRLKLKEKIDFGKTESKRGRVDNLDDD 913

Query: 852  GFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQV 911
            G P++GA+LQ+ DIVIGK ++SG DHSIKLKHTE+GMVQKV+LS+ND+GKNF+VV+LRQV
Sbjct: 914  GLPYVGASLQTNDIVIGKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQV 973

Query: 912  RSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAAL 971
            R+PCLGDKFSSMHGQKGV+GFLESQENFPFT +GIVPDIVINPHAFP+RQTPGQLLEAAL
Sbjct: 974  RTPCLGDKFSSMHGQKGVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQLLEAAL 1033

Query: 972  GKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLI 1031
            GKGIA      C G  RYATPF T SVD I EQLHRAG+S+WG+E + +GRTGE V+SL+
Sbjct: 1034 GKGIA------CKGTMRYATPFTTASVDVIAEQLHRAGYSRWGSENVLNGRTGERVQSLV 1087

Query: 1032 FIGPTFY 1038
            F+GPTFY
Sbjct: 1088 FMGPTFY 1094


>gi|109289915|gb|ABG29321.1| DNA-directed RNA polymerase, putative [Solanum bulbocastanum]
          Length = 1018

 Score = 1324 bits (3426), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 632/935 (67%), Positives = 754/935 (80%), Gaps = 42/935 (4%)

Query: 16  DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSK 75
           +LG  FL+ FC+KA+  FF +YG++SHQI+SYN+FI+ G+Q+ FDS GE  VEPGYDPSK
Sbjct: 62  ELGGGFLRNFCKKASAGFFEKYGVISHQIDSYNDFIRYGIQRVFDSVGEIHVEPGYDPSK 121

Query: 76  KGEGEWRYASMRFGQVTLDKPSFFAG------NGGDEHDMFPRHARLQNMTYSSRMKVKV 129
           KGEG+W++AS++FG+VTLD+P F+AG      NG +  +++PRHARLQNMTYS+R  + V
Sbjct: 122 KGEGDWKHASVKFGKVTLDRPKFWAGEKFSAYNGEEYLNLWPRHARLQNMTYSAR--IIV 179

Query: 130 QFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCD 189
           +  V+T+K V SDKFKTG EQ++ KE + ++  ++ IGRIPVMV S+LCWM G ++ DC+
Sbjct: 180 ETHVFTKKLVRSDKFKTGVEQFVDKECVMEDKRDVFIGRIPVMVNSELCWMSGADRPDCE 239

Query: 190 FDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFED 249
           FDHGGYFI+KGAEK+F+AQEQICLKRLWVSN   W VAY+S  KRNR+ ++L +  K E 
Sbjct: 240 FDHGGYFIVKGAEKIFIAQEQICLKRLWVSNHSTWMVAYRSGEKRNRVYLKLTETLKHEH 299

Query: 250 IKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADN 309
           IKG  K LSVYF + E+PIW+LFFALGVSSD+E+V+LID   +D +I+NIL ASIHDAD 
Sbjct: 300 IKGEAKALSVYFFA-EMPIWVLFFALGVSSDREVVDLIDVDIKDTNIINILVASIHDADK 358

Query: 310 KCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLL 369
            C++FRKG+ AL YVD+L+K   FPP ES EEC+  YLFP+L G KQKARFLGYMVKCLL
Sbjct: 359 NCEDFRKGKKALAYVDRLVKSCKFPPQESVEECIKEYLFPNLSGLKQKARFLGYMVKCLL 418

Query: 370 QAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIE 429
            +Y GRRK DNRDDFRNKRL+LAGELLEREL+VH+ HA +RM KALQRDL GDR V+PIE
Sbjct: 419 LSYIGRRKVDNRDDFRNKRLDLAGELLERELRVHVKHAERRMVKALQRDLCGDRQVQPIE 478

Query: 430 YYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYT 489
           +YLDASI+TNGLSRAFSTG W HP+KR ER+SG+VA L R NPLQ   DLR+TRQQV YT
Sbjct: 479 HYLDASIITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADLRKTRQQVTYT 538

Query: 490 GKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFNSGMEKL 549
           GKVGDARYPHPSHWGK+CFLSTPDGENCGLVKNL   GLVST++L+P+ E LF  GM+KL
Sbjct: 539 GKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLASMGLVSTTVLKPLLETLFRCGMQKL 598

Query: 550 ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELP---------------- 593
            DD++ SL GK KV +DGDW+GVC+DS  FVS+LRR+RRR E+P                
Sbjct: 599 VDDSATSLHGKQKVLLDGDWVGVCEDSALFVSKLRRQRRRNEVPHQLAHTLAIPPGICYL 658

Query: 594 -----------TQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKSL----EGKNYT 638
                       QVE+KRDE Q EVRIF DAGRI+RPLLVV N+  IK+L    +G +Y 
Sbjct: 659 LPTHVPVTLTEAQVEVKRDEQQDEVRIFSDAGRIMRPLLVVSNLKNIKALKDGMKGGDYG 718

Query: 639 FQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGII 698
           FQ LLD GIIEL+G EEEEDC TAWG++YLLK  ++  P+ +THCELDMSFLLGLSCG+I
Sbjct: 719 FQTLLDKGIIELIGPEEEEDCRTAWGVEYLLKADKENPPVNYTHCELDMSFLLGLSCGLI 778

Query: 699 PFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKP 758
           PFANHDHARRVLYQS+KHS QAIGF T NP+ RVDT +HQL+YPQRPLF TM+SD LGKP
Sbjct: 779 PFANHDHARRVLYQSEKHSQQAIGFSTVNPNARVDTNTHQLYYPQRPLFGTMLSDSLGKP 838

Query: 759 GYGHNH--ILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAE 816
               +   +L RPE YNGQ AIVAVNVHLGYNQEDS+VMNRASLERGMFRSEH+RSYKAE
Sbjct: 839 KCARHQKGMLSRPEYYNGQCAIVAVNVHLGYNQEDSVVMNRASLERGMFRSEHVRSYKAE 898

Query: 817 VDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGAD 876
           VDNKE   K+   +D VNFGK QSKIGRVDSLDDDGFPFIGANLQSGDI+IGKYA+SGAD
Sbjct: 899 VDNKEAMGKKSKVEDSVNFGKTQSKIGRVDSLDDDGFPFIGANLQSGDIIIGKYAESGAD 958

Query: 877 HSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQV 911
           HS+K+KHTERGMVQKV+LS+NDDGKNF+VVSLRQV
Sbjct: 959 HSVKMKHTERGMVQKVLLSANDDGKNFAVVSLRQV 993


>gi|414585187|tpg|DAA35758.1| TPA: putative DNA-directed RNA polymerase subunit family protein [Zea
            mays]
          Length = 1063

 Score = 1276 bits (3303), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 606/996 (60%), Positives = 776/996 (77%), Gaps = 17/996 (1%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSK 75
            D+  E L+ FC++A+ SFF+E GL+SHQINSYNEF+ +GLQ+ FDS GE IVEPGYDPSK
Sbjct: 81   DMSVESLEKFCKEASRSFFDEVGLISHQINSYNEFVSHGLQELFDSLGEVIVEPGYDPSK 140

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT 135
            KG G W++A ++FG+V L+KP F+ G      D  P HARLQNMTY+SR+ V+V  QVY+
Sbjct: 141  KGSGGWKHAIIKFGRVKLEKPVFWTGKDEGSVDFKPWHARLQNMTYASRLIVEVTIQVYS 200

Query: 136  QKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCDFDHGGY 195
             ++  SDK KTG + ++QK    +ET  I IG +PVMVKS+LC +  + + +C FD GGY
Sbjct: 201  LEK--SDKSKTGNDGFVQKRNFMNETHWIFIGLLPVMVKSNLCLLHSLNESECLFDAGGY 258

Query: 196  FIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEK 255
            F++KG EKVF+AQEQ CL+RLW+S+   WT+++ SE KR R+ ++LV+ ++ ED     K
Sbjct: 259  FLVKGMEKVFIAQEQRCLRRLWISDRPCWTISFMSEIKRRRIYIKLVESTRSEDFSES-K 317

Query: 256  VLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFR 315
            ++++ FL   +P+W+LFFALG+SSDKE+ ++ID    D S++N + A+I ++D  C++FR
Sbjct: 318  IITISFLYATMPVWLLFFALGISSDKEVFDMIDMQDCDASVINTISATIKESDKLCEDFR 377

Query: 316  KGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGR 375
            K   A +YVD+L+K + FPP ES ++ +  +LFP + G + KA FLGYMVKCLL A++G+
Sbjct: 378  KSDKARQYVDELVKSSRFPPAESFDDYIARFLFPDISGNRNKALFLGYMVKCLLMAFTGK 437

Query: 376  RKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDAS 435
            RKCDN+DDFRNKRL+L GELL REL+  +  A KRM KA+QRDL  DR ++ +E Y+DAS
Sbjct: 438  RKCDNKDDFRNKRLDLPGELLGRELRAQLRLAEKRMVKAIQRDLNSDRELQDLERYIDAS 497

Query: 436  ILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDA 495
            I+TNGL+RAFSTG+W HP+KR ER SGIVA L R NPLQ + DLR+TRQ+V Y GK GDA
Sbjct: 498  IVTNGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQMMSDLRKTRQRVAYAGKAGDA 557

Query: 496  RYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFNSGMEKLADDASY 555
            RYP+PS+WGK+CF+STPDGENCGLVKNL VT +VS+ +++P+ E   + GM KL D  + 
Sbjct: 558  RYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSSRVMQPLIESFISCGMSKLNDIPTE 617

Query: 556  SLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGR 615
             +    K+F++G+W+G C++S SFV  LR  RR   +  QVEIKRD+  +EVR+F DAGR
Sbjct: 618  HIQRMDKIFLNGNWVGSCENSASFVFRLRCMRRSSLIDPQVEIKRDKHHNEVRVFTDAGR 677

Query: 616  ILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDK 675
            ILRPLLVVEN+ KI+  +G++++F  L+   IIE +G EEEED   AWGI++L    E +
Sbjct: 678  ILRPLLVVENLNKIRKPKGRSFSFHELMQQEIIEFIGVEEEEDIQCAWGIRHLF---ESE 734

Query: 676  KPI-KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDT 734
              I  +THCELD SFLLGLSCGIIPFANH+ ARRVLYQS+KHS QAIG+ TTNP IRVDT
Sbjct: 735  GAISSYTHCELDPSFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDT 794

Query: 735  LSHQLFYPQRPLFRTMISDCLGKPGY---GHNHILPRPELYNGQNAIVAVNVHLGYNQED 791
            LSHQL+YPQRPLF+T+I+DCLG+  Y   G  +   RPE +NGQNAIVAVNVH G+NQED
Sbjct: 795  LSHQLYYPQRPLFKTVIADCLGRSDYASFGRKNDFARPEYFNGQNAIVAVNVHQGFNQED 854

Query: 792  SLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDD 851
            SLVMNRASLERGMFR+EH+RSYKA+V+NK+   KR    + ++FGK +SK GRVD+LDDD
Sbjct: 855  SLVMNRASLERGMFRTEHLRSYKADVENKD-GTKRLKLKEKIDFGKTESKRGRVDNLDDD 913

Query: 852  GFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQV 911
            G P++GA+LQ+ DIVIGK ++SG DHSIKLKHTE+GMVQKV+LS+ND+GKNF+VV+LRQV
Sbjct: 914  GLPYVGASLQTNDIVIGKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNFAVVTLRQV 973

Query: 912  RSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAAL 971
            R+PCLGDKFSSMHGQKGV+GFLESQENFPFT +GIVPDIVINPHAFP+RQTPGQLLEAAL
Sbjct: 974  RTPCLGDKFSSMHGQKGVVGFLESQENFPFTHEGIVPDIVINPHAFPTRQTPGQLLEAAL 1033

Query: 972  GKGIAALGKGICSGLKRYATPFATPSVDAITEQLHR 1007
            GKGIA      C G  RYATPF T SVD I EQLHR
Sbjct: 1034 GKGIA------CKGTMRYATPFTTASVDVIAEQLHR 1063


>gi|125560304|gb|EAZ05752.1| hypothetical protein OsI_27986 [Oryza sativa Indica Group]
          Length = 1347

 Score = 1220 bits (3156), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 643/1213 (53%), Positives = 822/1213 (67%), Gaps = 110/1213 (9%)

Query: 5    DNGFTDPTSLCDLGEEF--LKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSF 62
            D G  DP     + +    L+  C++A+ SFF E  LVSHQINSYN+F+ +GLQK FDS 
Sbjct: 199  DGGHADPPVQVPVDKRIASLEKLCKEASRSFFRETRLVSHQINSYNDFVSHGLQKMFDSL 258

Query: 63   GETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMF---PRHARLQNM 119
             E  VEP YDPSKK  G WR+A+++FG+V L++P F+  N   + +     P+HARLQ M
Sbjct: 259  DEVTVEPDYDPSKK-VGPWRHATIKFGRVELEEPVFWVDNCDLDVETLKLKPKHARLQKM 317

Query: 120  TYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCW 179
            TYSS+MKV++  QVY+  +  SDK KTG + YIQ++ +  ET  + IG++PVM       
Sbjct: 318  TYSSKMKVEMTVQVYSLHK--SDKAKTGEDPYIQRKHIMKETKWVTIGKLPVM------- 368

Query: 180  MKGVEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAY-KSENKRNRLI 238
                 + +C++D GGYF+IKG EKVFVA+EQ CL R+W+++S  W   Y +S+ +R  + 
Sbjct: 369  -----ESECEYDFGGYFLIKGMEKVFVAEEQRCLSRIWINDSPTWEACYQRSQIRRENIS 423

Query: 239  VRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILN 298
            ++ V  +      G  KV+++YFL   IPIWI+FFALGVSSDKE  ++ID    D S+ N
Sbjct: 424  IKPVQSND-----GFRKVINLYFLGATIPIWIMFFALGVSSDKEAFDIIDIQECDASMAN 478

Query: 299  ILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKA 358
            I+ A+I ++  +C+ F++   A +Y+DKLI+ T FPP  S +E +  ++FP + G + KA
Sbjct: 479  IISATITESHEQCEGFQREGRASEYIDKLIRNTKFPPKGSFDEYIGRHMFPDVSGNRSKA 538

Query: 359  RFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRD 418
             FLGYMV+CLL A SG RK DNRDDFRNKRL+LA ELL+REL VHI HA+KRM K +QR 
Sbjct: 539  LFLGYMVRCLLLASSGNRKSDNRDDFRNKRLDLACELLQRELWVHIMHAQKRMVKVMQRH 598

Query: 419  LYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVD 478
            L GD  ++P+E Y+ ASI+TNGL+RAFSTG+W HPF + ER SGI+A L R NPLQ + D
Sbjct: 599  LSGDGDLQPLECYVHASIVTNGLNRAFSTGSWCHPFNKRERCSGIIATLRRTNPLQMMSD 658

Query: 479  LRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIF 538
            +R+TRQ V Y GK GDARYP        C                           EP  
Sbjct: 659  MRKTRQWVAYAGKAGDARYP--------CLAR------------------------EPSV 686

Query: 539  EQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEI 598
            + L + GM+KL +     + GK ++F++G+ +GVC DS+ FV  LR  RRRK++  QVEI
Sbjct: 687  DALVSCGMKKLDELLLQEISGKDRIFLNGNLVGVCADSVEFVLHLRSMRRRKQIDAQVEI 746

Query: 599  KRDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEED 658
            KRD+   EVRIF D GRILRPLL+VEN+  I + +  +Y+FQ L+D  IIEL+G EEEED
Sbjct: 747  KRDKQNKEVRIFSDPGRILRPLLIVENLRNIMNRKNGSYSFQELMDQNIIELIGVEEEED 806

Query: 659  CCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSS 718
               A+GI++L    E+K    +THCELD SFLLGLSC IIPFANHD A+R+L Q++K S 
Sbjct: 807  IRCAYGIRHLFAGDEEKNFSFYTHCELDPSFLLGLSCSIIPFANHDTAKRILMQAEKISQ 866

Query: 719  QAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGY--GHNHILPRPELYNGQN 776
            QAIG+ TTNP  RVDT SHQL+YPQRPLF+T+ +DCLGK  Y  G  H   RPE +NGQN
Sbjct: 867  QAIGYSTTNPLFRVDTHSHQLYYPQRPLFKTVAADCLGKRDYTSGSKHDFARPEYFNGQN 926

Query: 777  AIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFG 836
            AIV+++VH G+NQEDSLV+NRASLERGMFR++H +SYKA ++NKE+  KR    + +NFG
Sbjct: 927  AIVSISVHQGFNQEDSLVLNRASLERGMFRTQHFKSYKAPIENKEI-TKRLKHKENINFG 985

Query: 837  KIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSS 896
            K  SK G VDSLD DG P+IGA+LQS DI+IGK +D G DHSIKL HTE+G+V+KVVLS+
Sbjct: 986  KTPSKKGLVDSLDIDGLPYIGASLQSNDIIIGKVSDCGEDHSIKLLHTEKGIVEKVVLSA 1045

Query: 897  NDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHA 956
             DDG N + V+LRQ RSP +GDKF+SMHGQKGV+GFL+SQENFPFT QGIVPDIVINPH 
Sbjct: 1046 TDDGTNSAFVTLRQTRSPRIGDKFASMHGQKGVIGFLDSQENFPFTHQGIVPDIVINPHG 1105

Query: 957  FPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRA--GFSKWG 1014
            FP+RQTPGQLLEAALGKGI ALG     G  RYATPF +PSV+ ITEQLH     F    
Sbjct: 1106 FPTRQTPGQLLEAALGKGI-ALG-----GATRYATPFTSPSVEVITEQLHNKFDWFLFMK 1159

Query: 1015 TERLYDGRTGEMVRSLIFIGP--TFYQRLIHMSEDKVKFRN--------------TGPVH 1058
             E L      EM + L+   P   +   +     D+   R                 P H
Sbjct: 1160 VEEL------EMFQMLLHFNPGQGWVLEVGRGERDQRPHRRACGVAGVHRADVLPAAPPH 1213

Query: 1059 ---------------PLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDS 1103
                           PLTRQPV DR+R+GG+KFGEMERDCL+AHGAAANLHERLF LSD 
Sbjct: 1214 GRGQGQVPGTPARCNPLTRQPVEDRRRYGGVKFGEMERDCLLAHGAAANLHERLFLLSDV 1273

Query: 1104 YQMHICRKCKNVANVIQRVV----GGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQEL 1159
             ++H+CR+C+  A V+   V    G GRKVRGPYCR C S +++V+ +VPYGAK+L QEL
Sbjct: 1274 SRLHVCRRCQRAAVVVSPAVAADGGCGRKVRGPYCRFCRSAEEVVRVSVPYGAKILYQEL 1333

Query: 1160 FSMGITLKFDTEF 1172
            FSMGI LKFDTE 
Sbjct: 1334 FSMGICLKFDTEL 1346


>gi|51970364|dbj|BAD43874.1| putative DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
          Length = 639

 Score =  966 bits (2496), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/656 (72%), Positives = 544/656 (82%), Gaps = 22/656 (3%)

Query: 523  LGVTGLVSTSILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSE 582
            + + GLVST  LE + E+LF  GME+L DD    L GK KV ++GDW+G+C DS SFV+E
Sbjct: 1    MSLLGLVSTQSLESVVEKLFACGMEELMDDTCTPLFGKHKVLLNGDWVGLCADSESFVAE 60

Query: 583  LRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQAL 642
            L+ +RR+ ELP ++EIKRD+  +EVRIF DAGR+LRPLLVVEN+ K+K  +   Y F  L
Sbjct: 61   LKSRRRQSELPREMEIKRDKDDNEVRIFTDAGRLLRPLLVVENLQKLKQEKPSQYPFDHL 120

Query: 643  LDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFAN 702
            LDHGI+EL+G EEEEDC TAWGIK LLK+     P  +THCELD+SFLLG+SC ++PFAN
Sbjct: 121  LDHGILELIGIEEEEDCNTAWGIKQLLKE-----PKIYTHCELDLSFLLGVSCAVVPFAN 175

Query: 703  HDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGH 762
            HDH RRVLYQSQKH  QAIGF +TNP+IR DTLS QLFYPQ+PLF+T+ S+CL K     
Sbjct: 176  HDHGRRVLYQSQKHCQQAIGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASECLKKE---- 231

Query: 763  NHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEM 822
                    L+NGQNAIVAVNVHLGYNQEDS+VMN+ASLERGMFRSE IRSYKAEVD K+ 
Sbjct: 232  -------VLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVDAKDS 284

Query: 823  QVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLK 882
            + KR+  D++V FGK  SKIG+VDSL+DDGFPFIGAN+ +GDIVIG+  +SGADHSIKLK
Sbjct: 285  E-KRKKMDELVQFGKTHSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCTESGADHSIKLK 343

Query: 883  HTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT 942
            HTERG+VQKVVLSSND+GKNF+ VSLRQVRSPCLGDKFSSMHGQKGVLG+LE Q+NFPFT
Sbjct: 344  HTERGIVQKVVLSSNDEGKNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFT 403

Query: 943  IQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAL-----GKGICSGLKRYATPFATPS 997
            IQGIVPDIVINPHAFPSRQTPGQLLEAAL KGIA            + L R+ATPF+TP 
Sbjct: 404  IQGIVPDIVINPHAFPSRQTPGQLLEAALSKGIACPIQKEGSSAAYTKLTRHATPFSTPG 463

Query: 998  VDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPV 1057
            V  ITEQLHRAGFS+WG ER+Y+GR+GEM+RS+IF+GPTFYQRL+HMSEDKVKFRNTGPV
Sbjct: 464  VTEITEQLHRAGFSRWGNERVYNGRSGEMMRSMIFMGPTFYQRLVHMSEDKVKFRNTGPV 523

Query: 1058 HPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVAN 1117
            HPLTRQPVADRKRFGGIKFGEMERDCLIAHGA+ANLHERLFTLSDS QMHICRKCK  AN
Sbjct: 524  HPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHICRKCKTYAN 583

Query: 1118 VIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTEFC 1173
            VI+R    GRK+RGPYCR+C S D +V+  VPYGAKLLCQELFSMGITL FDTE C
Sbjct: 584  VIERTPSSGRKIRGPYCRVCVSSDHVVRVYVPYGAKLLCQELFSMGITLNFDTELC 639


>gi|67626014|gb|AAY78476.1| RNA polymerase IV second largest subunit [Ginkgo biloba]
          Length = 651

 Score =  758 bits (1957), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/673 (56%), Positives = 480/673 (71%), Gaps = 31/673 (4%)

Query: 510  STPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGD 568
            STPDGENCGLVKNL VTGLVS  S  +PI + L   G+ KL   +S++L G   +F++G+
Sbjct: 1    STPDGENCGLVKNLAVTGLVSLHSAEDPILDILNECGITKLDQISSFNLKGAANIFINGE 60

Query: 569  WIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENM-- 626
            W+G   D    V +LR  RR++ +    EIKRD+ Q+E+RIF DAGRILRPL +V +   
Sbjct: 61   WVGAYDDPDFLVEKLRDLRRKQRIHPHXEIKRDKKQNEIRIFSDAGRILRPLFIVRDQRL 120

Query: 627  ----GKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTH 682
                 +I++ + +   F+ L++ GIIE++G EEEED   A G+  L     ++    FTH
Sbjct: 121  CISQKQIENFKKRGNPFKYLMERGIIEILGVEEEEDTKIACGVDILRMAENNRSYPSFTH 180

Query: 683  CELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYP 742
            CELD SFLL LS G IPF+NH+ A R LYQS+KHS QAIG  +TNP  R DT +HQLFYP
Sbjct: 181  CELDPSFLLSLSAGFIPFSNHNLATRTLYQSEKHSKQAIGHYSTNPRARCDTSAHQLFYP 240

Query: 743  QRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLER 802
            Q+PLF+TM S+CL K            + +NGQNAIVAVNVH GYNQEDSLV N AS++R
Sbjct: 241  QKPLFKTMSSECLNKM-----------QFFNGQNAIVAVNVHYGYNQEDSLVANHASIDR 289

Query: 803  GMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQS 862
            G+FRS H  ++ +E D+ +   K+ S    V+FGK Q+   +VD LDDDG PFIGA+L S
Sbjct: 290  GLFRSMHFHTFISETDHHDNDSKKSSFRVEVDFGKPQTGNLKVDKLDDDGLPFIGASLVS 349

Query: 863  GDIVIGKYADSGAD--HSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKF 920
            GDI+IGK     +D   S+KLKHTE+G V +VV+S+NDD K F+ V LR+VRSP LGDKF
Sbjct: 350  GDILIGKVGPQPSDVNFSLKLKHTEKGRVDQVVMSANDDDKKFARVCLREVRSPSLGDKF 409

Query: 921  SSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGK 980
            SSMHGQKGV+GF+E QEN PFT +GIVPD++INPHAFPSRQTPGQL E A GK IA+   
Sbjct: 410  SSMHGQKGVVGFIEEQENMPFTQEGIVPDLIINPHAFPSRQTPGQLFECAFGKAIAS--- 466

Query: 981  GICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQR 1040
               SG+   ATP+   ++  ITEQLHR G+ +WG E++Y+GRTG  ++S IFIGPT+YQR
Sbjct: 467  ---SGVVGDATPYGPVTLQYITEQLHRCGYQQWGKEQMYNGRTGCKLQSKIFIGPTYYQR 523

Query: 1041 LIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTL 1100
            LIHM+EDK+K+RN GPVHPLTRQPVADRKR GG+KFGEMERDC++AHGA ANL ERLF L
Sbjct: 524  LIHMAEDKMKYRNHGPVHPLTRQPVADRKRHGGVKFGEMERDCMLAHGATANLLERLFFL 583

Query: 1101 SDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELF 1160
            SD   MH+CR+C+N+A VI R       VRGPYC  C +   IVK NVPY  K+L QELF
Sbjct: 584  SDFSTMHVCRECRNMATVILR-----DGVRGPYCPFCKTAKHIVKVNVPYACKMLYQELF 638

Query: 1161 SMGITLKFDTEFC 1173
            S+G+ L+F TE C
Sbjct: 639  SIGMCLRFQTELC 651


>gi|168053094|ref|XP_001778973.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669645|gb|EDQ56228.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1238

 Score =  744 bits (1922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/1206 (38%), Positives = 676/1206 (56%), Gaps = 105/1206 (8%)

Query: 28   KAAVS--FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDP-SKKGEGEWRYA 84
            ++AV+   F    LV H + S+NEF++ GL   F+  G     P +      G G  ++A
Sbjct: 76   RSAVAKIIFKGRSLVEHHLRSFNEFMEYGLPAMFEEAGSFDCIPDHSVLVDSGIGVRKWA 135

Query: 85   SMRFGQVTLDKP-SFFAGNGGDEH-DMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSD 142
             + +G+V + KP + F   G  E  D+ P  ARL+N++YS+ + V +  +V +Q      
Sbjct: 136  RIVYGEVAVGKPYTTFTREGVKEVVDLLPHEARLRNLSYSAHLYVNMTLEVRSQG----- 190

Query: 143  KFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYF 196
                 ++    ++++  +T  I +G++PVMV S  C + G      V KG C FD GG+F
Sbjct: 191  ----NKKTQNPEDMIETKTDTICVGKVPVMVNSSFCHLHGLSEKDSVAKGHCSFDDGGFF 246

Query: 197  IIKGAEKVFVAQEQICLKRLWVS---NSMGWTVAYK------SENKRNRLIVRLVDMSKF 247
            IIKG+EKV +AQE+   + ++VS    +  W   Y       + N+ NR         K 
Sbjct: 247  IIKGSEKVLIAQEEKAHQSIYVSYLKRTDTWIATYSPTWRGFNSNQMNRGKT----FVKL 302

Query: 248  EDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA 307
               K  E ++ V  L+  +P+ ILF ALG SSDKE +  I +   D    ++L +SI DA
Sbjct: 303  RMRKKAELLVGVPGLTEPVPLVILFRALGTSSDKEFLESICYDSTDSRFHDLLLSSIWDA 362

Query: 308  DNKCDEFRK------GRNALKYVDKLIKGTTF-----------PPGESTEECMNTYLFPS 350
            D   +EF+       G +A+K V   I    F           P  E+ +  +      +
Sbjct: 363  DLILEEFQSRISYPAGASAIKSVRDQILSVRFLGTKLRNSRHVPSVEAGKTIIGQLFVHT 422

Query: 351  LHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKR 410
              G  +KA  LGYMV  L   + GRR  D++D F+NKRL+L G+LL  + +  +AH  + 
Sbjct: 423  EGGYTRKAMLLGYMVNQLCSTFLGRRLEDDKDHFKNKRLDLTGQLLSHQFRKAMAHLERD 482

Query: 411  MAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRA 470
            + + L   L   R + P++ Y+  +I+T  +  AF+ G W+       + SG+VA L R 
Sbjct: 483  VKRRLHPYLVKGRDLAPLKTYVTEAIVTKQMQSAFTLGNWN--TNEGLKSSGVVAVLKRM 540

Query: 471  NPLQTLVDLRRTRQQVQYTGKVGD-ARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLV 529
            NP+ TL  LR+ R  +    K  D AR+P+ S+WG+IC   T DG  CGL+K+L +T +V
Sbjct: 541  NPMATLSHLRQFRLNLPPPMKPTDPARHPNYSYWGRICPTQTSDGAECGLIKSLALTCVV 600

Query: 530  STSILE-PIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKD---SLSFVSELRR 585
            S+   E P+   L + GM  L +    ++    K+FV+G W+G+  D   +L+ V+ LR+
Sbjct: 601  SSDTPEEPVLHVLSDCGMHSLEEITPLTISMAEKIFVNGRWVGIFYDYNATLAIVATLRQ 660

Query: 586  KRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN----MGK--IKSL------E 633
             RR + L  ++E+ RD     V I  DAGR+LRPLL+V+     M K  +K+L      E
Sbjct: 661  LRREQLLHGEIEVARDPKTKAVHIHTDAGRLLRPLLIVKEQKLAMSKQHLKTLRAMSKQE 720

Query: 634  GKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGL 693
                 +  LL+  ++EL+GTEEEE    A     L +  +D     +TH E+D+S++ GL
Sbjct: 721  SAEACWNFLLEQQVVELLGTEEEEGALIALNRDDLERARKDPDAPLYTHSEIDVSYIFGL 780

Query: 694  SCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISD 753
               +IPF +H+ A R LYQ++KH  QA+GF T+N S R D   HQLFYPQ+PL  T   D
Sbjct: 781  GASVIPFLDHNQASRNLYQAEKHCKQAMGFYTSNLSGRSDCSGHQLFYPQKPLVTTRTWD 840

Query: 754  CLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSY 813
             L KP           E+ NGQ AIV++    GYNQEDS++MNRAS++RG+FRS H ++Y
Sbjct: 841  YLKKP-----------EITNGQVAIVSIQC-CGYNQEDSIIMNRASIDRGLFRSMHFKTY 888

Query: 814  KAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKY-AD 872
            + E   +   V    +   ++  K +S+   ++ +D+DGFP +G  L+ GDI+IGK  A+
Sbjct: 889  RGE---ERHNVIEHFAKPSISIAK-RSRNASLNKIDEDGFPHLGDYLEKGDIIIGKLTAE 944

Query: 873  SG----ADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKG 928
             G    AD S +L+  E G V +V+LSS +DG   + V LR  R P  GDKFSSMHGQKG
Sbjct: 945  MGNPKLADSSQRLRAHENGRVDQVLLSSEEDGHRIAKVRLRCSRRPQAGDKFSSMHGQKG 1004

Query: 929  VLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKR 988
            V+G + +QE+ PFT QG+VPDI+INPHA P+RQT GQLLE+ LGK +A        G ++
Sbjct: 1005 VIGAVLNQEDLPFTRQGVVPDIIINPHALPNRQTVGQLLESLLGKLMAV------RGTQQ 1058

Query: 989  YATPFATPSVD-AITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSED 1047
               PF   S      +QLH++ + + G+E + +G TG  + SLI IG TFYQRL HM ED
Sbjct: 1059 SVAPFQKQSATRKFMDQLHQSEYQRGGSESMTNGTTGMRLNSLISIGATFYQRLDHMVED 1118

Query: 1048 KVKFRNT-GPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQM 1106
            K+K+R + GPV  LTRQPV +RK  GG+KFGEMERDC+I HGA+  L ER F LSD Y M
Sbjct: 1119 KIKYRGSGGPVDALTRQPVKNRKNMGGVKFGEMERDCMIGHGASVTLRERCFLLSDPYAM 1178

Query: 1107 HICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITL 1166
             +C  C+       R  G     R  +C+ C +G  +V+  +PY  KLL QEL SMGITL
Sbjct: 1179 LVCSSCR-------RPSGHTDPSRRRFCKFCCTGKHVVQIQIPYSCKLLWQELLSMGITL 1231

Query: 1167 KFDTEF 1172
              +T+ 
Sbjct: 1232 FLETKL 1237


>gi|237512136|gb|ACQ99759.1| RNA polymerase IV, partial [Heliosperma macranthum]
          Length = 479

 Score =  742 bits (1915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/478 (74%), Positives = 408/478 (85%), Gaps = 8/478 (1%)

Query: 535  EPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPT 594
            E + +++ N GME L DD   SL GK KV +DG+W+G+C +S +FV ELRR+RRR +   
Sbjct: 7    ERLLKKMVNCGMETLVDDTCSSLTGKAKVLMDGEWVGICGNSSTFVEELRRQRRRNQFLN 66

Query: 595  QVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTE 654
            QVEIK+D   +EVRIF DAGRILRPLLVVEN+ KIK L+G +++FQ LLD GI+EL+G E
Sbjct: 67   QVEIKQDVQNTEVRIFCDAGRILRPLLVVENLRKIKLLKGDDFSFQTLLDKGILELIGVE 126

Query: 655  EEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQ 714
            EEEDCCTAW IKYL    + K   K+THCELDMSFLLG+SCGIIPFANHDHARRVLYQS+
Sbjct: 127  EEEDCCTAWEIKYLFVGDKGKGLEKYTHCELDMSFLLGVSCGIIPFANHDHARRVLYQSE 186

Query: 715  KHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGY--GHNHILPRPELY 772
            KHS QAIG+ +TNP+IR+DTLSHQ++YPQRPLFR++I+D LGK  Y  G N  LP+ E +
Sbjct: 187  KHSGQAIGYASTNPNIRIDTLSHQMYYPQRPLFRSVIADALGKSDYTLGRNQRLPKSEFF 246

Query: 773  NGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDM 832
            NGQNAIVAVNVHLGYNQEDS+VMNRASLERGMFR+EHIRSYKAEVDNK+   KRR  DD 
Sbjct: 247  NGQNAIVAVNVHLGYNQEDSIVMNRASLERGMFRTEHIRSYKAEVDNKDSLEKRRKFDDA 306

Query: 833  VNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKV 892
            V+FGKIQSK+GRVDSLDDDGFP IGANLQSGDI+IG+ ++SG DHSIKLKHTE+GMVQKV
Sbjct: 307  VSFGKIQSKLGRVDSLDDDGFPHIGANLQSGDIIIGRCSESGTDHSIKLKHTEKGMVQKV 366

Query: 893  VLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVI 952
            VLS+NDDGKNF+VVSLRQVRSPCLGDKFSSMHGQKGVLG+LESQENFPFT QGIVPDIVI
Sbjct: 367  VLSANDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTKQGIVPDIVI 426

Query: 953  NPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGF 1010
            NPHAFPSRQTP QLLEAALGKGIA      C G  RYATPF+TPSV++ITEQLHRAGF
Sbjct: 427  NPHAFPSRQTPAQLLEAALGKGIA------CGGTLRYATPFSTPSVESITEQLHRAGF 478


>gi|237512138|gb|ACQ99760.1| RNA polymerase IV, partial [Heliosperma macranthum]
          Length = 479

 Score =  741 bits (1913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/478 (74%), Positives = 408/478 (85%), Gaps = 8/478 (1%)

Query: 535  EPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPT 594
            E + +++ N GME L DD   SL GK KV +DG+W+G+C +S +FV ELRR+RRR +   
Sbjct: 7    ERLLKKMVNCGMETLVDDTCSSLTGKAKVLMDGEWVGICGNSSTFVEELRRQRRRNQFLN 66

Query: 595  QVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTE 654
            QVEIK+D   +EVRIF DAGRILRPLLVVEN+ KIK L+G +++FQ LLD GI+EL+G E
Sbjct: 67   QVEIKQDVQNTEVRIFCDAGRILRPLLVVENLRKIKLLKGDDFSFQTLLDKGILELIGVE 126

Query: 655  EEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQ 714
            EEEDCCTAW IKYL    + K   K+THCELDMSFLLG+SCGIIPFANHDHARRVLYQS+
Sbjct: 127  EEEDCCTAWEIKYLFVGDKGKGLEKYTHCELDMSFLLGVSCGIIPFANHDHARRVLYQSE 186

Query: 715  KHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGY--GHNHILPRPELY 772
            KHS QAIG+ +TNP+IR+DTLSHQ++YPZRPLFR++I+D LGK  Y  G N  LP+ E +
Sbjct: 187  KHSGQAIGYASTNPNIRIDTLSHQMYYPZRPLFRSVIADALGKSDYTLGRNQRLPKSEFF 246

Query: 773  NGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDM 832
            NGQNAIVAVNVHLGYNQEDS+VMNRASLERGMFR+EHIRSYKAEVDNK+   KRR  DD 
Sbjct: 247  NGQNAIVAVNVHLGYNQEDSIVMNRASLERGMFRTEHIRSYKAEVDNKDSLEKRRKFDDA 306

Query: 833  VNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKV 892
            V+FGKIQSK+GRVDSLDDDGFP IGANLQSGDI+IG+ ++SG DHSIKLKHTE+GMVQKV
Sbjct: 307  VSFGKIQSKLGRVDSLDDDGFPHIGANLQSGDIIIGRCSESGTDHSIKLKHTEKGMVQKV 366

Query: 893  VLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVI 952
            VLS+NDDGKNF+VVSLRQVRSPCLGDKFSSMHGQKGVLG+LESQENFPFT QGIVPDIVI
Sbjct: 367  VLSANDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTKQGIVPDIVI 426

Query: 953  NPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGF 1010
            NPHAFPSRQTP QLLEAALGKGIA      C G  RYATPF+TPSV++ITEQLHRAGF
Sbjct: 427  NPHAFPSRQTPAQLLEAALGKGIA------CGGTLRYATPFSTPSVESITEQLHRAGF 478


>gi|227826379|gb|ACP41914.1| RNA polymerase IV, partial [Heliosperma macranthum]
          Length = 475

 Score =  735 bits (1898), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/475 (74%), Positives = 404/475 (85%), Gaps = 8/475 (1%)

Query: 535  EPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPT 594
            E + +++ N GME L DD   SL GK KV +DG+W G+C +S +FV ELRR+RRR +   
Sbjct: 7    ERLHKKMVNCGMETLVDDTCTSLNGKAKVLIDGEWAGICGNSSTFVEELRRQRRRNQFLN 66

Query: 595  QVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTE 654
            QVEIK+D   +EVRIF DAGRILRPLLVVEN+ KIK L+G  ++FQ LLD GI+EL+G E
Sbjct: 67   QVEIKQDIQNAEVRIFCDAGRILRPLLVVENLRKIKLLKGDEFSFQTLLDKGILELIGVE 126

Query: 655  EEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQ 714
            EEEDC TAW IKYL    + K   K+THCELDMSFLLG+SCGIIPFANHDHARRVLYQS+
Sbjct: 127  EEEDCRTAWEIKYLFTGEKGKGLEKYTHCELDMSFLLGVSCGIIPFANHDHARRVLYQSE 186

Query: 715  KHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGY--GHNHILPRPELY 772
            KHS QAIG+ TTNP+IR+DTLSHQ++YPQRPLFR++I+D LGK G+  G N ILP+ E +
Sbjct: 187  KHSGQAIGYATTNPNIRIDTLSHQMYYPQRPLFRSVIADSLGKAGHPLGRNQILPKAEFF 246

Query: 773  NGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDM 832
            NGQNAIVAVNVHLGYNQEDS+VMNRASLERGMFR+EHIRSYKAEVDNK+   KRR  DD 
Sbjct: 247  NGQNAIVAVNVHLGYNQEDSIVMNRASLERGMFRTEHIRSYKAEVDNKDSLEKRRKFDDA 306

Query: 833  VNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKV 892
            V+FGKIQSK+GRVDSLDDDGFP IGANLQSGDI+IG+ ++SG DHSIKLKHTE+GMVQKV
Sbjct: 307  VSFGKIQSKLGRVDSLDDDGFPHIGANLQSGDIIIGRSSESGTDHSIKLKHTEKGMVQKV 366

Query: 893  VLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVI 952
            +LS+NDDGKNF+VVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT QGIVPDIVI
Sbjct: 367  LLSANDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVI 426

Query: 953  NPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHR 1007
            NPHAFPSRQTP QLLEAALGKGIA      C G  RYATPF+TPSV++ITEQLHR
Sbjct: 427  NPHAFPSRQTPAQLLEAALGKGIA------CGGTLRYATPFSTPSVESITEQLHR 475


>gi|227826383|gb|ACP41916.1| RNA polymerase IV, partial [Heliosperma veselskyi subsp. veselskyi]
          Length = 475

 Score =  733 bits (1892), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/475 (74%), Positives = 404/475 (85%), Gaps = 8/475 (1%)

Query: 535  EPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPT 594
            E + +++ N GME L DD   SL GK KV +DG+W G+C +S +FV ELRR+RRR +   
Sbjct: 7    ERLHKKMVNCGMETLVDDTCTSLNGKAKVLIDGEWAGICGNSSTFVEELRRQRRRNQFLN 66

Query: 595  QVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTE 654
            QVEIK+D   +EVRIF DAGRILRPLLVVEN+ KIK L+G  ++FQ LLD GI+EL+G E
Sbjct: 67   QVEIKQDVQNAEVRIFCDAGRILRPLLVVENLRKIKLLKGDEFSFQTLLDKGILELIGVE 126

Query: 655  EEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQ 714
            EEEDC TAW IKYL    + K   K+THCELD+SFLLG+SCGIIPFANHDHARRVLYQS+
Sbjct: 127  EEEDCRTAWEIKYLFTGEKGKGLEKYTHCELDLSFLLGVSCGIIPFANHDHARRVLYQSE 186

Query: 715  KHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGY--GHNHILPRPELY 772
            KHS QAIG+ TTNP+IR+DTLSHQ++YPQRPLFR++I+D LGK G+  G N ILP+ E +
Sbjct: 187  KHSGQAIGYATTNPNIRIDTLSHQMYYPQRPLFRSVIADSLGKAGHPLGRNQILPKAEFF 246

Query: 773  NGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDM 832
            NGQNAI+AVNVHLGYNQEDS+VMNRASLERGMFR+EHIRSYKAEVDNK+   KRR  DD 
Sbjct: 247  NGQNAILAVNVHLGYNQEDSIVMNRASLERGMFRTEHIRSYKAEVDNKDSLEKRRKFDDA 306

Query: 833  VNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKV 892
            V+FGKIQSK+GRVDSLDDDGFP IGANLQSGDI+IG+ ++SG DHSIKLKHTE+GMVQKV
Sbjct: 307  VSFGKIQSKLGRVDSLDDDGFPHIGANLQSGDIIIGRSSESGTDHSIKLKHTEKGMVQKV 366

Query: 893  VLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVI 952
            +LS+NDDGKNF+VVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT QGIVPDIVI
Sbjct: 367  LLSANDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVI 426

Query: 953  NPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHR 1007
            NPHAFPSRQTP QLLEAALGKGIA      C G  RYATPF+TPSV++ITEQLHR
Sbjct: 427  NPHAFPSRQTPAQLLEAALGKGIA------CGGTLRYATPFSTPSVESITEQLHR 475


>gi|227826381|gb|ACP41915.1| RNA polymerase IV, partial [Heliosperma pusillum]
          Length = 475

 Score =  733 bits (1891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/475 (74%), Positives = 404/475 (85%), Gaps = 8/475 (1%)

Query: 535  EPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPT 594
            E + +++ N GME L DD   SL GK KV +DG+W G+C +S +FV ELRR+RRR +   
Sbjct: 7    ERLHKKMVNCGMETLVDDTCTSLNGKAKVLIDGEWAGICGNSSTFVEELRRQRRRNQFLN 66

Query: 595  QVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTE 654
            QVEIK+D   +EVRIF DAGRILRPLLVVEN+ KIK L+G  ++FQ LLD GI+EL+G E
Sbjct: 67   QVEIKQDVQNAEVRIFCDAGRILRPLLVVENLRKIKLLKGDEFSFQTLLDKGILELIGVE 126

Query: 655  EEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQ 714
            EEEDC TAW IKYL    + K   K+THCELD+SFLLG+SCGIIPFANHDHARRVLYQS+
Sbjct: 127  EEEDCRTAWEIKYLFTGDKGKGLEKYTHCELDLSFLLGVSCGIIPFANHDHARRVLYQSE 186

Query: 715  KHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGY--GHNHILPRPELY 772
            KHS QAIG+ TTNP+IR+DTLSHQ++YPQRPLFR++I+D LGK G+  G N ILP+ E +
Sbjct: 187  KHSGQAIGYATTNPNIRIDTLSHQMYYPQRPLFRSVIADSLGKAGHPLGRNQILPKAEFF 246

Query: 773  NGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDM 832
            NGQNAI+AVNVHLGYNQEDS+VMNRASLERGMFR+EHIRSYKAEVDNK+   KRR  DD 
Sbjct: 247  NGQNAILAVNVHLGYNQEDSIVMNRASLERGMFRTEHIRSYKAEVDNKDSLEKRRKFDDA 306

Query: 833  VNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKV 892
            V+FGKIQSK+GRVDSLDDDGFP IGANLQSGDI+IG+ ++SG DHSIKLKHTE+GMVQKV
Sbjct: 307  VSFGKIQSKLGRVDSLDDDGFPHIGANLQSGDIIIGRSSESGTDHSIKLKHTEKGMVQKV 366

Query: 893  VLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVI 952
            +LS+NDDGKNF+VVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT QGIVPDIVI
Sbjct: 367  LLSANDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVI 426

Query: 953  NPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHR 1007
            NPHAFPSRQTP QLLEAALGKGIA      C G  RYATPF+TPSV++ITEQLHR
Sbjct: 427  NPHAFPSRQTPAQLLEAALGKGIA------CGGTLRYATPFSTPSVESITEQLHR 475


>gi|237512142|gb|ACQ99762.1| RNA polymerase IV, partial [Heliosperma veselskyi subsp. veselskyi]
          Length = 474

 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/474 (74%), Positives = 405/474 (85%), Gaps = 8/474 (1%)

Query: 535  EPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPT 594
            E + +++ N GME L DD   SL GK KV +DG+W+G+C +S +FV ELRR+RRR +L  
Sbjct: 7    ERLLKKMVNCGMETLVDDTCSSLTGKAKVLMDGEWVGICGNSSTFVEELRRQRRRNQLLN 66

Query: 595  QVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTE 654
            QVEIK+D   +EVRIF DAGRILRPLLVVEN+ KIK L+G +Y+FQ LLD GI+EL+G E
Sbjct: 67   QVEIKQDVQNTEVRIFCDAGRILRPLLVVENLRKIKLLKGDDYSFQTLLDKGILELIGVE 126

Query: 655  EEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQ 714
            EEEDCCTAW IKYL    + K   K+THCELDMSFLLG+SCGIIPFANHDHARRVLYQS+
Sbjct: 127  EEEDCCTAWEIKYLFMGDKGKGLEKYTHCELDMSFLLGVSCGIIPFANHDHARRVLYQSE 186

Query: 715  KHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGY--GHNHILPRPELY 772
            KHS QAIG+ +TNP+IR+DTLSHQ++YPQRPLFR++I+D LGKP +  G N  LP+ E +
Sbjct: 187  KHSGQAIGYASTNPNIRIDTLSHQMYYPQRPLFRSVIADALGKPDHTLGRNQRLPKSEFF 246

Query: 773  NGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDM 832
            NGQNAIVAVNVHLGYNQEDS+VMNRASLERGMFR+EHIRSYKAEVD+K+    RR  DD 
Sbjct: 247  NGQNAIVAVNVHLGYNQEDSIVMNRASLERGMFRTEHIRSYKAEVDDKDSLENRRKFDDA 306

Query: 833  VNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKV 892
            ++FGKIQSK+GRVDSLDDDGFP IGANLQSGDI+IG+ ++SG DHSIKLKHTE+GMVQKV
Sbjct: 307  ISFGKIQSKLGRVDSLDDDGFPHIGANLQSGDIIIGRCSESGTDHSIKLKHTEKGMVQKV 366

Query: 893  VLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVI 952
            VLS+NDDGKNF+VVSLRQVRSPCLGDKFSSMHGQKGVLG+LESQENFPFT QGIVPDIVI
Sbjct: 367  VLSANDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTKQGIVPDIVI 426

Query: 953  NPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLH 1006
            NPHAFPSRQTP QLLEAALGKGIA      C G  RYATPF+TPSV++ITEQLH
Sbjct: 427  NPHAFPSRQTPAQLLEAALGKGIA------CGGTLRYATPFSTPSVESITEQLH 474


>gi|168003281|ref|XP_001754341.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694443|gb|EDQ80791.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 906

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/935 (41%), Positives = 553/935 (59%), Gaps = 62/935 (6%)

Query: 262  LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNAL 321
            +S  IP  I+  ALG  SDKE + ++ +   D  ++ ++  SI  AD   D      NAL
Sbjct: 11   VSVPIPAVIIMRALGFCSDKEFMEMVCYDLSDLHLMELIRPSILAADEYMD------NAL 64

Query: 322  KYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNR 381
             Y+   +     P  E   + +N        G KQKA FLGYM++ +  A  GR   D++
Sbjct: 65   AYIGSKMTNNVKPDEECGRDVLNLMFHHIGQGYKQKAYFLGYMIRQICLARLGRCPEDDK 124

Query: 382  DDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGL 441
            + ++NKRL+LAG+LL  + +  +AH ++ M K LQ+ L  + ++  I+ ++  SI+T  L
Sbjct: 125  EHYKNKRLDLAGQLLRHQFRAAMAHLQRDMQKQLQKHLGKEDSLGSIKTFVQESIITKNL 184

Query: 442  SRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGD-ARYPHP 500
              AF+ G W+      +R SG+V ++ R N +  +  LR+ R  +    +  + AR+P+ 
Sbjct: 185  QGAFTLGNWN--TSEGQRSSGVVGDIKRTNTIAMISHLRQLRLNLPPKSRPTESARHPNF 242

Query: 501  SHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKLADDASYSLGG 559
            S+W ++C + T DG++CGLVKN+ +TG++S++  E P+   L + GM  L +    SL  
Sbjct: 243  SYWARVCPVQTTDGDDCGLVKNISLTGILSSNTEEEPLMAILLDHGMRYLEEILPSSLAD 302

Query: 560  KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRP 619
              KVF++G W+G   +S   V+ LR  RR+  +  + E+ +D+   EVRI+ D GRILRP
Sbjct: 303  TDKVFLNGKWVGTLDNSQDLVNILRAHRRKGAVHEETEVVKDDHLKEVRIYTDGGRILRP 362

Query: 620  LLVVEN---------MGKI----KSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIK 666
            LLVV+N         + KI    K+ +     +QALL  G++E +G EEEE    A G  
Sbjct: 363  LLVVQNQCLVLSKRHLKKINMDMKTGKTAKECWQALLADGVVEYLGVEEEEGAMVALGSD 422

Query: 667  YLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTT 726
             L K       + ++HCE+D S+L+GL    IPF  H+ A R L+QS KH  QAIG  TT
Sbjct: 423  DLAKARGCDGALVYSHCEIDSSYLMGLGASTIPFLEHNQASRNLFQSDKHCKQAIGLYTT 482

Query: 727  NPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLG 786
            N   R D  +  LFYPQ+PL  T  +            IL +PELY+GQ  IVA+  + G
Sbjct: 483  NFQSRADASASHLFYPQKPLVTTRAAS-----------ILQKPELYSGQTVIVAILCY-G 530

Query: 787  YNQEDSLVMNRASLERGMFRSEHIRSYKAE-VDNKEMQVKRRSSDDMVNFGKIQSKIGRV 845
            YNQEDS+VMN+AS++RG+FRS H ++YK E   N + Q  + S+ D+  +         +
Sbjct: 531  YNQEDSIVMNQASVDRGLFRSAHYKTYKGEEKKNIQEQFSKPSTSDVKGWYN-----KSL 585

Query: 846  DSLDDDGFPFIGANLQSGDIVIGKYADS-----GADHSIKLKHTERGMVQKVVLSSNDDG 900
            D ++ DGFP +G  L  GDIVIGK           D S  LK  ++G V +V+LSS +DG
Sbjct: 586  DKVEGDGFPCLGEKLVKGDIVIGKVTSEVHNPRQVDSSTHLKVHQKGHVDQVMLSSEEDG 645

Query: 901  KNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSR 960
               + V LR  R+P  GDKFSSMHGQKGV+G L  QE+ PFT QGIVPDI++NPHA PSR
Sbjct: 646  HRIAKVRLRVTRAPQAGDKFSSMHGQKGVIGALFPQEDLPFTQQGIVPDIIMNPHALPSR 705

Query: 961  QTPGQLLEAALGKGIAALGKGICSGLKRYATPFA-TPSVDAITEQLHRAGFSKWGTERLY 1019
            QT GQ+LE  LGK IAA GK      +RYA PF+   + +AI + LH A  ++ G E + 
Sbjct: 706  QTVGQILECLLGKAIAASGK------RRYAIPFSGIDNAEAINQYLHEAKLARGGCEFMS 759

Query: 1020 DGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFR-NTGPVHPLTRQPVADRKRFGGIKFGE 1078
            +G TG+ ++ L+ IGPTFYQRL HM+EDK+K+R NTGPV+ LTRQPV DR   GG+KFGE
Sbjct: 760  NGTTGQRLKVLVTIGPTFYQRLEHMAEDKIKYRGNTGPVNLLTRQPVKDRNSLGGLKFGE 819

Query: 1079 MERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICD 1138
            MERDC++ HGA+A L ER F LSD Y+M+IC+ C+  A +           R P C+ C 
Sbjct: 820  MERDCMLGHGASATLRERYFLLSDPYKMYICQSCRRPATM--------DSSRIPKCQFCK 871

Query: 1139 SGDDIVKANVPYGAKLLCQELFSMGITLKFDTEFC 1173
            +G  IV+  +PY  KLL QEL SMGI +  DT+ C
Sbjct: 872  NGKRIVQVQIPYACKLLWQELLSMGICVYMDTKKC 906


>gi|237512140|gb|ACQ99761.1| RNA polymerase IV, partial [Heliosperma pusillum]
          Length = 443

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/448 (75%), Positives = 390/448 (87%), Gaps = 8/448 (1%)

Query: 562  KVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLL 621
            KV +DG+W+G+C +S +FV ELRR+RRR +L  QVEIK+D   +EVRIF DAGRILRPLL
Sbjct: 2    KVLMDGEWVGICGNSSTFVEELRRQRRRNQLLNQVEIKQDVQNTEVRIFCDAGRILRPLL 61

Query: 622  VVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFT 681
            VVEN+ KIK L+G +Y+FQ LLD GI+EL+G EEEEDCCTAW IKYL    + K   K+T
Sbjct: 62   VVENLRKIKLLKGDDYSFQTLLDKGILELIGVEEEEDCCTAWEIKYLFMGDKGKGLEKYT 121

Query: 682  HCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFY 741
            HCELDMSFLLG+SCGIIPFANHDHARRVLYQS+KHS QAIG+ +TNP+IR+DTLSHQ++Y
Sbjct: 122  HCELDMSFLLGVSCGIIPFANHDHARRVLYQSEKHSGQAIGYASTNPNIRIDTLSHQMYY 181

Query: 742  PQRPLFRTMISDCLGKPGY--GHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRAS 799
            PQRPLFR++I+D LGKP +  G N  LP+ E +NGQNAIVAVNVHLGYNQEDS+VMNRAS
Sbjct: 182  PQRPLFRSVIADALGKPDHTLGRNQRLPKSEFFNGQNAIVAVNVHLGYNQEDSIVMNRAS 241

Query: 800  LERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGAN 859
            LERGMFR+EHIRSYKAEVD+K+    RR  DD ++FGKIQSK+GRVDSLDDDGFP IGAN
Sbjct: 242  LERGMFRTEHIRSYKAEVDDKDSLENRRKFDDAISFGKIQSKLGRVDSLDDDGFPHIGAN 301

Query: 860  LQSGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDK 919
            LQSGDI+IG+ ++SG DHSIKLKHTE+GMVQKVVLS+NDDGKNF+VVSLRQVRSPCLGDK
Sbjct: 302  LQSGDIIIGRCSESGTDHSIKLKHTEKGMVQKVVLSANDDGKNFAVVSLRQVRSPCLGDK 361

Query: 920  FSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALG 979
            FSSMHGQKGVLG+LESQENFPFT QGIVPDIVINPHAFPSRQTP QLLEAALGKGIA   
Sbjct: 362  FSSMHGQKGVLGYLESQENFPFTKQGIVPDIVINPHAFPSRQTPAQLLEAALGKGIA--- 418

Query: 980  KGICSGLKRYATPFATPSVDAITEQLHR 1007
               C G  RYATPF+TPSV++ITEQLHR
Sbjct: 419  ---CGGTLRYATPFSTPSVESITEQLHR 443


>gi|108710089|gb|ABF97884.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative,
            expressed [Oryza sativa Japonica Group]
 gi|125545063|gb|EAY91202.1| hypothetical protein OsI_12811 [Oryza sativa Indica Group]
          Length = 1222

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/1200 (35%), Positives = 637/1200 (53%), Gaps = 113/1200 (9%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP--GYDPSKKGEGEWRYASMRFG 89
            ++F E GLV  Q++S++EFI+N +Q+  D   +  + P   ++P ++ E       + FG
Sbjct: 65   AYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQAEFAETLHKISFG 124

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
            Q+ L KP     +G +   +FP+ ARL+N+TYS+ + V V ++V           K G +
Sbjct: 125  QIYLSKPMMTEADG-ETATLFPKSARLRNLTYSAPLYVDVSYRV----------MKKGHD 173

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWM------KGVEKGDCDFDHGGYFIIKGAEK 203
                 E +  E   + IG++P+M++S  C +         E G+C +D GGYFII G+EK
Sbjct: 174  CEEVTETM--EYPKVFIGKVPIMLRSSYCTLFQQSEKDLTELGECPYDQGGYFIINGSEK 231

Query: 204  VFVAQEQICLKRLWV-----SNSMGWTVAYKS--ENKRNRLIVRLVDMSKFEDIKGGEK- 255
            V +AQE++    ++V      N   +    +S  EN+        V M      KGG   
Sbjct: 232  VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRPASSMFVRMLSRAGAKGGSSG 291

Query: 256  ---VLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD 312
                 ++ ++  +IPI I+F ALG  +DK+I+  I +   D  ++ +L  S+ +A     
Sbjct: 292  QYIRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFV--- 348

Query: 313  EFRKGRNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSL----HGTKQKARFLGY 363
              +  + AL Y+ K  +G T    +       +E +   + P +        +KA + GY
Sbjct: 349  -IQNQQVALDYIGK--RGATVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGY 405

Query: 364  MVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDR 423
            ++  LL    GRR  D+RD + NKRL+LAG LL    ++      + +   +Q+ +   +
Sbjct: 406  IIHRLLMCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGK 465

Query: 424  TVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTR 483
             V  +++ + A  +T+GL  + +TG W    +   R +G+   L R     TL  LRR  
Sbjct: 466  EVN-LQFAIKAKTITSGLKYSLATGNWGQANQAGTR-AGVSQVLNRLTYASTLSHLRRLN 523

Query: 484  QQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLF 542
              +   GK+   R  H SHWG +C   TP+G+ CGLVKNL +   ++  S   PI E L 
Sbjct: 524  SPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLE 583

Query: 543  NSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
              G E   + +   +    K+FV+G W+G+ ++    V  LRR RR+ ++ T+V + RD 
Sbjct: 584  EWGTENFEEISPAVIPQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDI 643

Query: 603  LQSEVRIFMDAGRILRPLLVVEN---------MGKIKSLEGKNYTFQALLDHGIIELVGT 653
               E+R++ D GR  RPL +VEN         +  ++  E     +  L+  G IE + T
Sbjct: 644  RLKELRLYTDYGRCSRPLFIVENQRLLIKKRHIRALQQRETPEEGWHDLVAKGFIEYIDT 703

Query: 654  EEEEDCCTAWGIKYLL---KDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVL 710
            EEEE    +  I  L+    + E+     +THCE+  S +LG+   IIPF +H+ + R  
Sbjct: 704  EEEETTMISMTINDLIGARHNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 763

Query: 711  YQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPE 770
            YQS     QA+G   TN  +R+DTL++ L+YPQ+PL  T   + L      H   LP   
Sbjct: 764  YQS-AMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHL------HFRQLP--- 813

Query: 771  LYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSD 830
               G NAIVA+  + GYNQEDS++MN++S++RG FRS   RSY+ E       VK     
Sbjct: 814  --AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE---- 867

Query: 831  DMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD------------ 872
                FG+      +  + G  D LDDDG    G  +   D++IGK +             
Sbjct: 868  ---EFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDDAQGQATR 924

Query: 873  -SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLG 931
             +  DHS  L+H+E GMV +V+L++N DG  F  V +R VR P +GDKFSS HGQKG +G
Sbjct: 925  YTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVG 984

Query: 932  FLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYAT 991
               +QE+ P+TI+GI PDI++NPHA PSR T GQL+E  +GK  A +GK      +  AT
Sbjct: 985  MTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK------EGDAT 1038

Query: 992  PFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKF 1051
            PF   +VD I++ LH+ G+   G E +Y+G TG  + ++IF+GPT+YQRL HM +DK+  
Sbjct: 1039 PFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHS 1098

Query: 1052 RNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRK 1111
            R  GPV  LTRQP   R R GG++FGEMERDC+IAHGAA  L ERLF  SD+Y++H+C K
Sbjct: 1099 RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEK 1158

Query: 1112 CKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
            C  +A           K     CR C +  DIV+ ++PY  KLL QEL +M I  +  T+
Sbjct: 1159 CGLIAI-------ANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTQ 1211


>gi|222625458|gb|EEE59590.1| hypothetical protein OsJ_11898 [Oryza sativa Japonica Group]
          Length = 1218

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/1200 (35%), Positives = 637/1200 (53%), Gaps = 113/1200 (9%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP--GYDPSKKGEGEWRYASMRFG 89
            ++F E GLV  Q++S++EFI+N +Q+  D   +  + P   ++P ++ E       + FG
Sbjct: 61   AYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQAEFAETLHKISFG 120

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
            Q+ L KP     +G +   +FP+ ARL+N+TYS+ + V V ++V           K G +
Sbjct: 121  QIYLSKPMMTEADG-ETATLFPKSARLRNLTYSAPLYVDVSYRV----------MKKGHD 169

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWM------KGVEKGDCDFDHGGYFIIKGAEK 203
                 E +  E   + IG++P+M++S  C +         E G+C +D GGYFII G+EK
Sbjct: 170  CEEVTETM--EYPKVFIGKVPIMLRSSYCTLFQQSEKDLTELGECPYDQGGYFIINGSEK 227

Query: 204  VFVAQEQICLKRLWV-----SNSMGWTVAYKS--ENKRNRLIVRLVDMSKFEDIKGGEK- 255
            V +AQE++    ++V      N   +    +S  EN+        V M      KGG   
Sbjct: 228  VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAENQNRPASSMFVRMLSRAGAKGGSSG 287

Query: 256  ---VLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD 312
                 ++ ++  +IPI I+F ALG  +DK+I+  I +   D  ++ +L  S+ +A     
Sbjct: 288  QYIRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAF---- 343

Query: 313  EFRKGRNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSL----HGTKQKARFLGY 363
              +  + AL Y+ K  +G T    +       +E +   + P +        +KA + GY
Sbjct: 344  VIQNQQVALDYIGK--RGATVGVTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGY 401

Query: 364  MVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDR 423
            ++  LL    GRR  D+RD + NKRL+LAG LL    ++      + +   +Q+ +   +
Sbjct: 402  IIHRLLMCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGK 461

Query: 424  TVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTR 483
             V  +++ + A  +T+GL  + +TG W    +   R +G+   L R     TL  LRR  
Sbjct: 462  EVN-LQFAIKAKTITSGLKYSLATGNWGQANQAGTR-AGVSQVLNRLTYASTLSHLRRLN 519

Query: 484  QQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLF 542
              +   GK+   R  H SHWG +C   TP+G+ CGLVKNL +   ++  S   PI E L 
Sbjct: 520  SPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLE 579

Query: 543  NSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
              G E   + +   +    K+FV+G W+G+ ++    V  LRR RR+ ++ T+V + RD 
Sbjct: 580  EWGTENFEEISPAVIPQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDI 639

Query: 603  LQSEVRIFMDAGRILRPLLVVEN---------MGKIKSLEGKNYTFQALLDHGIIELVGT 653
               E+R++ D GR  RPL +VEN         +  ++  E     +  L+  G IE + T
Sbjct: 640  RLKELRLYTDYGRCSRPLFIVENQRLLIKKRHIRALQQRETPEEGWHDLVAKGFIEYIDT 699

Query: 654  EEEEDCCTAWGIKYLL---KDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVL 710
            EEEE    +  I  L+    + E+     +THCE+  S +LG+   IIPF +H+ + R  
Sbjct: 700  EEEETTMISMTINDLIGARHNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 759

Query: 711  YQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPE 770
            YQS     QA+G   TN  +R+DTL++ L+YPQ+PL  T   + L      H   LP   
Sbjct: 760  YQS-AMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHL------HFRQLP--- 809

Query: 771  LYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSD 830
               G NAIVA+  + GYNQEDS++MN++S++RG FRS   RSY+ E       VK     
Sbjct: 810  --AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE---- 863

Query: 831  DMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD------------ 872
                FG+      +  + G  D LDDDG    G  +   D++IGK +             
Sbjct: 864  ---EFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDDAQGQATR 920

Query: 873  -SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLG 931
             +  DHS  L+H+E GMV +V+L++N DG  F  V +R VR P +GDKFSS HGQKG +G
Sbjct: 921  YTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVG 980

Query: 932  FLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYAT 991
               +QE+ P+TI+GI PDI++NPHA PSR T GQL+E  +GK  A +GK      +  AT
Sbjct: 981  MTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK------EGDAT 1034

Query: 992  PFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKF 1051
            PF   +VD I++ LH+ G+   G E +Y+G TG  + ++IF+GPT+YQRL HM +DK+  
Sbjct: 1035 PFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHS 1094

Query: 1052 RNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRK 1111
            R  GPV  LTRQP   R R GG++FGEMERDC+IAHGAA  L ERLF  SD+Y++H+C K
Sbjct: 1095 RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEK 1154

Query: 1112 CKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
            C  +A           K     CR C +  DIV+ ++PY  KLL QEL +M I  +  T+
Sbjct: 1155 CGLIAI-------ANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTQ 1207


>gi|357120315|ref|XP_003561873.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
            [Brachypodium distachyon]
          Length = 1228

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1199 (35%), Positives = 636/1199 (53%), Gaps = 113/1199 (9%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP--GYDPSKKGEGEWRYASMRFG 89
            ++F E GLV  Q++S++EFI+N +Q+  D   +  + P   ++P ++ E       + FG
Sbjct: 71   AYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQAEFAETLHKISFG 130

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
            Q+ L KP     +G +   +FP+ ARL+N+TYS+ + V V ++V           K G +
Sbjct: 131  QIYLSKPMMTEADG-ETATLFPKSARLRNLTYSAPLYVDVSYRV----------VKKGHD 179

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWM------KGVEKGDCDFDHGGYFIIKGAEK 203
                 E +  E   + IG++P+M++S  C +         E G+C +D GGYF+I G+EK
Sbjct: 180  CEEVTETM--EYPKVFIGKVPIMLRSSYCTLFQQSEKDLTELGECPYDQGGYFVINGSEK 237

Query: 204  VFVAQEQICLKRLWV-----SNSMGWTVAYKS--ENKRNRLIVRLVDMSKFEDIKGGEK- 255
            V +AQE++    ++V      N   +    +S  EN+        V M      KGG   
Sbjct: 238  VLIAQEKMSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASSMFVRMLSRAGAKGGSSG 297

Query: 256  ---VLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD 312
                 ++ ++  +IPI I+F ALG  +DK+I+  I +   D  ++ +L  S+ +A     
Sbjct: 298  QYIRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAF---- 353

Query: 313  EFRKGRNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSL----HGTKQKARFLGY 363
              +  + AL Y+ K  +G T            +E +   + P +        +KA + GY
Sbjct: 354  VIQNQQVALDYIGK--RGATVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGY 411

Query: 364  MVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDR 423
            ++  LL    GRR  D+RD + NKRL+LAG LL    ++      + +   +Q+ +   +
Sbjct: 412  IIHRLLMCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGK 471

Query: 424  TVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTR 483
             V  +++ + A  +T+GL  + +TG W    +   R +G+   L R     TL  LRR  
Sbjct: 472  DVN-LQFAIKAKTITSGLKYSLATGNWGQANQAGTR-AGVSQVLNRLTYASTLSHLRRLN 529

Query: 484  QQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLF 542
              +   GK+   R  H SHWG +C   TP+G+ CGLVKNL +   ++  S   PI E L 
Sbjct: 530  SPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLE 589

Query: 543  NSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
              G E   + +   +    K+FV+G W+G+ ++    V  LRR RR+ ++ T+V + RD 
Sbjct: 590  EWGTENFEEISPAVIPQAAKIFVNGCWVGIHRNPDLLVKTLRRLRRQIDVNTEVGVVRDI 649

Query: 603  LQSEVRIFMDAGRILRPLLVVE---------NMGKIKSLEGKNYTFQALLDHGIIELVGT 653
               E+R++ D GR  RPL +V+         ++  ++  E  +  +  L+  G IE + T
Sbjct: 650  RLKELRLYTDYGRCSRPLFIVDGQRLLIKKKHIRALQQRETPDEGWHDLVAKGFIEYIDT 709

Query: 654  EEEEDCCTAWGIKYLL---KDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVL 710
            EEEE    +  I  L+    + ++     +THCE+  S +LG+   IIPF +H+ + R  
Sbjct: 710  EEEETTMISMTINDLVSARNNPQEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNT 769

Query: 711  YQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPE 770
            YQS     QA+G   TN  +R+DTL++ L+YPQ+PL  T   + L      H   LP   
Sbjct: 770  YQSAM-GKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHL------HFRQLP--- 819

Query: 771  LYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSD 830
               G NAIVA+  + GYNQEDS++MN++S++RG FRS   RSY+ E       VK     
Sbjct: 820  --AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE---- 873

Query: 831  DMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD------------ 872
                FG+      +  + G  D LDDDG    G  +   D++IGK +             
Sbjct: 874  ---EFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDDAQGQATR 930

Query: 873  -SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLG 931
             S  DHS  L+H+E GMV +V+L++N DG  F  V +R VR P +GDKFSS HGQKG +G
Sbjct: 931  YSKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVG 990

Query: 932  FLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYAT 991
               +QE+ P+TI+GI PDI++NPHA PSR T GQL+E  +GK  A +GK      +  AT
Sbjct: 991  MTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK------EGDAT 1044

Query: 992  PFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKF 1051
            PF   +VD I++ LH+ G+   G E +Y+G TG  + ++IF+GPT+YQRL HM +DK+  
Sbjct: 1045 PFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHS 1104

Query: 1052 RNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRK 1111
            R  GPV  LTRQP   R R GG++FGEMERDC+IAHGAA  L ERLF  SD+Y++H+C K
Sbjct: 1105 RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEK 1164

Query: 1112 CKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
            C  +A           K     CR C +  DIV+ ++PY  KLL QEL +M I  +  T
Sbjct: 1165 CGLIAI-------ANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1216


>gi|225446351|ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
            vinifera]
 gi|147841183|emb|CAN72948.1| hypothetical protein VITISV_033708 [Vitis vinifera]
 gi|302143287|emb|CBI21848.3| unnamed protein product [Vitis vinifera]
          Length = 1193

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/1203 (35%), Positives = 649/1203 (53%), Gaps = 118/1203 (9%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP--GYDPSKKGEGEWRYASMRFG 89
            ++F E GLV  Q++S++EFI+N +Q+  D   +  + P   ++P ++ +       + FG
Sbjct: 33   AYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGRQSDFLETIYKISFG 92

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
            Q+ L KP     + G+   +FP+ ARL+N+TYS+ + V V       KR+     K G +
Sbjct: 93   QIYLSKP-MMTESDGETATLFPKAARLRNLTYSAPLYVDVT------KRI----IKKGHD 141

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
              +++   + E T + IG++P+M++S  C +         E G+C +D GGYFII G+EK
Sbjct: 142  --LEEVTETQEFTKVFIGKVPIMLRSSYCTVYQNSEKDLTELGECPYDQGGYFIINGSEK 199

Query: 204  VFVAQEQICLKRLWV-----SNSMGWTVAYKS-ENKRNR----LIVRLVDMSKFEDIKGG 253
            V +AQE++    ++V      N   +    +S    +NR    + VR++  +  +    G
Sbjct: 200  VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSG 259

Query: 254  EKV-LSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD 312
            + +  ++ ++ TEIPI I+F ALG  +DK+I+  I +   D  ++ +L  S+ +A     
Sbjct: 260  QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAF---- 315

Query: 313  EFRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSL----HGTKQKARFL 361
              +  + AL Y+ K  +G+T   G + E       E +   + P +    +   +KA + 
Sbjct: 316  VIQNQQVALDYIGK--RGSTV--GVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYF 371

Query: 362  GYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYG 421
            GY++  LL    GRR  D+RD + NKRL+LAG LL    ++      + +   +Q+ +  
Sbjct: 372  GYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDN 431

Query: 422  DRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRR 481
             + V  +++ + A  +T+GL  + +TG W        R +G+   L R     TL  LRR
Sbjct: 432  GKDVN-LQFAIKAKTITSGLKYSLATGNWGQANAAGTR-AGVSQVLNRLTYASTLSHLRR 489

Query: 482  TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQ 540
                +   GK+   R  H SHWG +C   TP+G+ CGLVKNL +   ++  S   PI E 
Sbjct: 490  LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEF 549

Query: 541  LFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKR 600
            L     E   + +   +    K+FV+G W+G+ ++    V  LR+ RR+ ++ T+V + R
Sbjct: 550  LEEWSTENFEEISPAVIPQSTKIFVNGCWVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIR 609

Query: 601  DELQSEVRIFMDAGRILRPLLVVENMG------KIKSLEGKNYT----FQALLDHGIIEL 650
            D    E+R++ D GR  RPL +VE          I++L+ +       +  L+  G IE 
Sbjct: 610  DIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKRDIRALQLRESPEDGGWHDLVSKGFIEY 669

Query: 651  VGTEEEEDCCTAWGIKYLLK---DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHAR 707
            V TEEEE    +  I  L+    + E+     +THCE+  S +LG+   IIPF +H+ + 
Sbjct: 670  VDTEEEETTMISMTINDLISARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSP 729

Query: 708  RVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILP 767
            R  YQS     QA+G   TN  +R+DTL++ L+YPQ+PL  T   + L      H   LP
Sbjct: 730  RNTYQS-AMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHL------HFRQLP 782

Query: 768  RPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRR 827
                  G NAIVA+  + GYNQEDS++MN++S++RG FRS   RSY+ E       VK  
Sbjct: 783  -----AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE- 836

Query: 828  SSDDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA-----DSGA- 875
                  +FG+      +  + G  D LDDDG    G  +   D++IGK       DS   
Sbjct: 837  ------DFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDSQGQ 890

Query: 876  -------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKG 928
                   DHS  L+H+E GMV +V+L++N DG  F  V +R VR P +GDKFSS HGQKG
Sbjct: 891  ASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKG 950

Query: 929  VLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKR 988
             +G   +QE+ P+T++GI PDI++NPHA PSR T GQL+E  +GK  A +GK      + 
Sbjct: 951  TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK------EG 1004

Query: 989  YATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDK 1048
             ATPF   +VD I++ LH+ G+   G E +Y+G TG  + ++IF+GPT+YQRL HM +DK
Sbjct: 1005 DATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDK 1064

Query: 1049 VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHI 1108
            +  R  GPV  LTRQP   R R GG++FGEMERDC+IAHGAA  L ERLF  SD+Y++H+
Sbjct: 1065 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHV 1124

Query: 1109 CRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
            C +C  +A           K     CR C +  DIV+ ++PY  KLL QEL +M I  + 
Sbjct: 1125 CERCGLIAI-------ANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRM 1177

Query: 1169 DTE 1171
             T+
Sbjct: 1178 LTK 1180


>gi|356558375|ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine
            max]
          Length = 1193

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/1201 (35%), Positives = 644/1201 (53%), Gaps = 114/1201 (9%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP--GYDPSKKGEGEWRYASMRFG 89
            ++F E GLV  Q++S++EFI+N +Q+  D   +  + P   ++P  + +       + FG
Sbjct: 34   AYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETIYKISFG 93

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
            Q+ L KP     + G+   +FP+ ARL+N+TYS+ + V V       KRV     K G +
Sbjct: 94   QIYLSKP-MMTESDGETATLFPKAARLRNLTYSAPLYVDVS------KRVV----KKGHD 142

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
               ++   + + T + IG++P+M++S  C +         E G+C +D GGYFII G+EK
Sbjct: 143  G--EEVTETQDLTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 200

Query: 204  VFVAQEQICLKRLWV-----SNSMGWTVAYKS-ENKRNR----LIVRLVDMSKFEDIKGG 253
            V +AQE++    ++V      N   +    +S    +NR    + VR++  +  +    G
Sbjct: 201  VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSG 260

Query: 254  EKV-LSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD 312
            + +  ++ ++ TEIPI I+F ALG  +DK+I+  I +   D  ++ +L  S+ +A     
Sbjct: 261  QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTLMMELLRPSLEEAF---- 316

Query: 313  EFRKGRNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSL----HGTKQKARFLGY 363
              +  + AL Y+ K  +G T    +       +E +   + P +    +   +KA + GY
Sbjct: 317  VIQNQQVALDYIGK--RGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGY 374

Query: 364  MVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDR 423
            ++  LL    GRR  D+RD + NKRL+LAG LL    ++      + +   +Q+ +   +
Sbjct: 375  IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGK 434

Query: 424  TVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTR 483
             V  +++ + A  +T+GL  + +TG W        R +G+   L R     TL  LRR  
Sbjct: 435  DVN-LQFAIKAKTITSGLKYSLATGNWGQANAAGTR-AGVSQVLNRLTYASTLSHLRRLN 492

Query: 484  QQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLF 542
              +   GK+   R  H S WG +C   TP+G+ CGLVKNL +   ++  S   PI E L 
Sbjct: 493  SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLE 552

Query: 543  NSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
              G E   + +   +    K+FV+G W+G+ +D    V  LR+ RRR ++ T+V + RD 
Sbjct: 553  EWGTENFEEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTLRKLRRRVDVNTEVGVVRDI 612

Query: 603  LQSEVRIFMDAGRILRPLLVVENM------GKIKSLEGKNYT----FQALLDHGIIELVG 652
            +  E+RI+ D GR  RPL +V+          I +L+ +       +  L+  G IE + 
Sbjct: 613  ILKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHALQQRESPEDGGWHDLVSKGFIEYID 672

Query: 653  TEEEEDCCTAWGIKYLLK---DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRV 709
            TEEEE    +  I  L++   + ED     +THCE+  S +LG+   IIPF +H+ + R 
Sbjct: 673  TEEEETTMISMTINDLVQARINPEDAYAGTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 732

Query: 710  LYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRP 769
             YQS     QA+G   TN   R+DTL++ L+YPQ+PL  T   + L      H   LP  
Sbjct: 733  TYQS-AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL------HFRQLP-- 783

Query: 770  ELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSS 829
                G NAIVA+  + GYNQEDS++MN++S++RG FRS   RSY+ E       VK    
Sbjct: 784  ---AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE--- 837

Query: 830  DDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD----------- 872
                +FG+      +  + G  D LDDDG    G  +   D++IGK              
Sbjct: 838  ----DFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQAL 893

Query: 873  --SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVL 930
              +  DHSI L+H+E G+V +V+L++N DG  F  V +R VR P +GDKFSS HGQKG +
Sbjct: 894  RYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 953

Query: 931  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYA 990
            G   +QE+ P+T++GI PDI++NPHA PSR T GQL+E  +GK  A +GK      +  A
Sbjct: 954  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK------EGDA 1007

Query: 991  TPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVK 1050
            TPF   +VD I++ LH+ G+   G E +Y+G TG  + ++IF+GPT+YQRL HM +DK+ 
Sbjct: 1008 TPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIH 1067

Query: 1051 FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICR 1110
             R  GPV  LTRQP   R R GG++FGEMERDC+IAHGAA  L ERLF  SD+Y++H+C 
Sbjct: 1068 SRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCE 1127

Query: 1111 KCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
            +C  +A           K     CR C +  DIV+  +PY  KLL QEL +M I  +  T
Sbjct: 1128 RCGLIAI-------ANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMLT 1180

Query: 1171 E 1171
            +
Sbjct: 1181 K 1181


>gi|242038711|ref|XP_002466750.1| hypothetical protein SORBIDRAFT_01g013470 [Sorghum bicolor]
 gi|241920604|gb|EER93748.1| hypothetical protein SORBIDRAFT_01g013470 [Sorghum bicolor]
          Length = 1218

 Score =  676 bits (1745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/1215 (34%), Positives = 634/1215 (52%), Gaps = 128/1215 (10%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP--GYDP 73
            DL +E  +        ++F E GLV  Q++S++EFI+N +Q+  D   +  + P   ++P
Sbjct: 60   DLRDEIGQDDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 119

Query: 74   SKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQV 133
             ++ E       + FGQ+ L KP     +G +   +FP+ ARL+N+TYS+ + V V ++V
Sbjct: 120  GRQAEFAETLHKISFGQIYLSKPMMTEADG-ETATLFPKSARLRNLTYSAPLYVDVSYRV 178

Query: 134  YTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGD 187
              +     +  +T             +   + IG++P+M++S  C +         E G+
Sbjct: 179  MKKGHDCEEVTETA------------DYPKVFIGKVPIMLRSSYCTLYQQSEKDLTELGE 226

Query: 188  CDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKS--ENKRNRLIVR 240
            C +D GGYFII G+EKV +AQE++    ++V      N   +    +S  EN+       
Sbjct: 227  CPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKFAYVAEVRSMAENQNRPASSM 286

Query: 241  LVDMSKFEDIKGGEK----VLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
             V M      KGG        ++ ++  +IPI I+F ALG  +DK+I+  I +   D  +
Sbjct: 287  FVRMLSRAGAKGGSSGQYIRATLPYIRADIPIIIVFRALGFVADKDILEHICYDFSDTQM 346

Query: 297  LNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSL 351
            + +L  S+ +A       +  + AL Y+ K  +G T            +E +   + P +
Sbjct: 347  MELLRPSLEEAF----VIQNQQVALDYIGK--RGATVGVTREKRIKYAKEILQKEMLPHV 400

Query: 352  ----HGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHA 407
                    +KA + GY++  LL    GRR  D+RD + NKRL+LAG LL    ++ + + 
Sbjct: 401  GVGEFCETKKAYYFGYIIHRLLMCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMCVDNG 460

Query: 408  RKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANL 467
            ++                  +++ + A  +T+GL  + +TG W    +   R +G+   L
Sbjct: 461  KEV----------------NLQFAIKAKTITSGLKYSLATGNWGQANQAGTR-AGVSQVL 503

Query: 468  GRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTG 527
             R     TL  LRR    +   GK+   R  H SHWG +C   TP+G+ CGLVKNL +  
Sbjct: 504  NRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMV 563

Query: 528  LVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRK 586
             ++  S   PI E L   G E   + +   +    K+FV+G W+G+ ++    V  LRR 
Sbjct: 564  YITVGSAANPILEFLEEWGTENFEEISPAVIPQAAKIFVNGCWVGIHRNPDLLVKTLRRL 623

Query: 587  RRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE---------NMGKIKSLEGKNY 637
            RR+ ++ T+V + RD    E+R++ D GR  RPL +VE         ++  ++  E  + 
Sbjct: 624  RRQIDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIVEGQRLLIKKAHIIALQHRETPDE 683

Query: 638  TFQALLDHGIIELVGTEEEEDCCTAWGIKYLLK---DIEDKKPIKFTHCELDMSFLLGLS 694
             +  L+  G IE + TEEEE    +  I  L     + ED     +THCE+  S +LG+ 
Sbjct: 684  GWHELVSKGYIEYIDTEEEETTMISMTISDLHNARHNPEDAYSETYTHCEIHPSLILGVC 743

Query: 695  CGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDC 754
              IIPF +H+ + R  YQS     QA+G   TN  +R+DTL++ L+YPQ+PL  T   + 
Sbjct: 744  ASIIPFPDHNQSPRNTYQSAM-GKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEH 802

Query: 755  LGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYK 814
            L      H   LP      G NAIVA+  + GYNQEDS++MN++S++RG FRS   RSY+
Sbjct: 803  L------HFRQLP-----AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR 851

Query: 815  AEVDNKEMQVKRRSSDDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDIVIG 868
             E       VK         FG+      +  + G  D LDDDG    G  +   D++IG
Sbjct: 852  DEEKKMGTLVKE-------EFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIG 904

Query: 869  KYAD-------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPC 915
            K +              S  DHS  L+H+E GMV +V+L++N DG  F  V +R VR P 
Sbjct: 905  KTSPIPQDDAQGQASRYSKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQ 964

Query: 916  LGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGI 975
            +GDKFSS HGQKG +G   +QE+ P+TI+GI PDI++NPHA PSR T GQL+E  +GK  
Sbjct: 965  IGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVA 1024

Query: 976  AALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGP 1035
            A +G+      +  ATPF   +VD I++ LHR  +   G E +Y+G TG  + ++IF+GP
Sbjct: 1025 AQMGR------EGDATPFTDVTVDNISKALHRCNYQMRGFETMYNGHTGRKLTAMIFLGP 1078

Query: 1036 TFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHE 1095
            T+YQRL HM +DK+  R  GPV  LTRQP   R R GG++FGEMERDC+IAHGAA  L E
Sbjct: 1079 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKE 1138

Query: 1096 RLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLL 1155
            RLF  SD+Y++H+C KC  +A           K     CR C +  DIV+ ++PY  KLL
Sbjct: 1139 RLFDQSDAYRVHVCEKCGLIAI-------ANLKKNSFECRGCKNKTDIVQVHIPYACKLL 1191

Query: 1156 CQELFSMGITLKFDT 1170
             QEL +M I  +  T
Sbjct: 1192 FQELMAMAIAPRMLT 1206


>gi|68300799|gb|AAY89342.1| RNA polymerase II second largest subunit [Nicotiana sylvestris]
          Length = 1203

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1203 (34%), Positives = 649/1203 (53%), Gaps = 119/1203 (9%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP--GYDPSKKGEGEWRYASMRFG 89
            ++F E GLV  Q++S++EFI+N +Q+  D      + P   ++PS++ +       ++F 
Sbjct: 46   AYFEEKGLVRQQLDSFDEFIQNTMQEIVDETANIEIRPESQHNPSRQPDFVETIYKIKFT 105

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
            Q+ L +P     + G+ + +FP+ ARL+N+TYSS + V V+ +V           K G +
Sbjct: 106  QIYLSRP-MMTESDGETNTLFPKAARLRNLTYSSPLYVDVKKEV----------IKKGHD 154

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFIIKGAEK 203
               ++   + E T + IG++P+M++S  C +  +      E G+C +D GGYFI+ G+EK
Sbjct: 155  --YEEVTENQEFTKVFIGKVPIMLRSSYCSLYNLSEKDLTELGECPYDQGGYFIVNGSEK 212

Query: 204  VFVAQEQICLKRLWV-----SNSMGWTVAYKS----ENKR-NRLIVRLVDMSKFEDIKGG 253
            V +AQE++    ++V      N   +    +S    +NK  + + VR++  S  +   G 
Sbjct: 213  VLIAQEKMSSNHVYVFKKRQPNKYAYVAEVRSIAEGQNKAPSSMFVRMLSRSNAKGASGQ 272

Query: 254  EKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDE 313
                ++ ++  EIPI ++F ALG  +DK+I+  I +   D  ++ +L  S+ +A      
Sbjct: 273  YIRATLPYIRAEIPIIVVFRALGFVADKDILAHICYDFADTQMMELLRPSLEEAF----V 328

Query: 314  FRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLHGTKQ-----KARFL 361
             +  + AL Y+ K  +G+T   G + E       E +   + P + GT++     KA + 
Sbjct: 329  IQNQQVALDYIGK--RGSTV--GFTRERRIKYAKEILQREMLPHV-GTREYCETKKAYYF 383

Query: 362  GYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYG 421
            GY++  LL    GRR  D+RD + BKRL+LAG LL    ++      + +   +Q+ +  
Sbjct: 384  GYIIHRLLLCVLGRRPEDDRDHYGBKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDS 443

Query: 422  DRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRR 481
             + V  +++ + A  +T+GL  + +TG W        R +G+   L R     TL  LRR
Sbjct: 444  GKDVN-LQFAIKAKTITSGLKYSLATGNWGQANAAGTR-AGVSQVLNRLTFASTLSHLRR 501

Query: 482  TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQ 540
                +   GK+   R  H SHWG +C   TP+G+ CGLVKNL +   ++  S   PI E 
Sbjct: 502  LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEF 561

Query: 541  LFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKR 600
            L     E   + +   +    K+FV+G W+G+ ++    V  LR+ RR+ ++ T+V + R
Sbjct: 562  LEEWSTENFEEISPAVIPQSTKIFVNGCWVGIHRNPDLLVRTLRQLRRQVDVNTEVGVVR 621

Query: 601  DELQSEVRIFMDAGRILRPLLVVENMGKIKSL----------EGKNYTFQALLDHGIIEL 650
            +    E+R++ D GR  RPL +VE    I               ++  +  L+  G IE 
Sbjct: 622  NINLKELRLYTDYGRCSRPLFIVEKKKLIIKKKDIIALQMRESSEDSGWHDLVAKGFIEY 681

Query: 651  VGTEEEEDCCTAWGIKYLLK---DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHAR 707
            V TEEEE    A  I  L     + E+     +THCE+  S +LG+   IIPF +H+ + 
Sbjct: 682  VDTEEEETTMIAMTINDLTNSRLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSP 741

Query: 708  RVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILP 767
            R  YQS     QA+G   TN   R+DTL++ L+YPQ+PL  T   + L      H   LP
Sbjct: 742  RNTYQS-AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL------HFRQLP 794

Query: 768  RPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRR 827
                  G NAIVA++ + GYNQEDS++MN++S++RG FRS   RSY+ E       VK  
Sbjct: 795  -----AGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE- 848

Query: 828  SSDDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD--------- 872
                  +FG+      +  + G  D LDDDGF   G  +   D++IGK            
Sbjct: 849  ------DFGRPDRENTMGMRHGSYDKLDDDGFAPPGTRVSGDDVIIGKTTPISQDDAQGQ 902

Query: 873  ----SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKG 928
                +  DHS  L+H+E G+V +V+L++N DG  F  + +R VR P +GDKFSS HGQKG
Sbjct: 903  PARYTQKDHSTSLRHSETGIVDQVLLTTNADGLRFVKIRMRSVRIPQIGDKFSSRHGQKG 962

Query: 929  VLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKR 988
             +G   +QE+ P+ I+GI PDI++NPHA PSR T GQL+E  +GK  A +GK      + 
Sbjct: 963  TIGMTYTQEDMPWNIEGITPDIIVNPHAIPSRMTIGQLVECIMGKVAAHMGK------EG 1016

Query: 989  YATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDK 1048
             ATPF   +VD I++ LHR G+   G ER+Y+G TG ++ ++IF+GPT+YQRL HM +DK
Sbjct: 1017 DATPFTDVTVDNISKALHRCGYQMRGFERMYNGHTGRVLTAMIFLGPTYYQRLKHMVDDK 1076

Query: 1049 VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHI 1108
            +  R  GPV  LTRQP   R R GG++FGEMERDC+IAHGAA  L ERLF  SD+Y++H+
Sbjct: 1077 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHV 1136

Query: 1109 CRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
            C++C  +A      +   +K+    CR C +  D V+  +PY  KLL QEL SM I  + 
Sbjct: 1137 CQQCGLIA------IANLKKMSFE-CRSCRNKTDNVQVYIPYACKLLIQELMSMAIAPRM 1189

Query: 1169 DTE 1171
             T+
Sbjct: 1190 LTK 1192


>gi|68300802|gb|AAY89343.1| RNA polymerase II second largest subunit [Antirrhinum majus]
          Length = 1198

 Score =  675 bits (1741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/1201 (35%), Positives = 642/1201 (53%), Gaps = 118/1201 (9%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMR--FG 89
            S+F E GLV  Q++S++EFI+N +Q+  D      + P    +  G  ++  A  R  FG
Sbjct: 40   SYFEEKGLVRQQLDSFDEFIQNTMQEIVDESSNIEIRPESQHNPGGNSDFAEAMYRISFG 99

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
            Q+ L KP     + G+ + +FP+ ARL+N+TYSS + V V       KRV    F     
Sbjct: 100  QIYLSKP-MMTESDGETNTLFPKAARLRNLTYSSPLYVDVT------KRVVKKGFDC--- 149

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEK 203
               ++   + E   + IG++P+M++S  C +  + +      G+C +D GGYFI+ G+EK
Sbjct: 150  ---EEVTETQEFAKVFIGKVPIMLRSSYCSLYHLPEKDLMDLGECPYDQGGYFIVNGSEK 206

Query: 204  VFVAQEQICLKRLWV-----SNSMGWTVAYKS----ENKR-NRLIVRLVDMSKFEDIKGG 253
            V +AQE++    ++V      N   +    +S    +NK  + + VR++  S  +    G
Sbjct: 207  VLIAQEKMSTNHVYVFKKRQPNKYSYVAEVRSIAESQNKAPSGMFVRMLSRSGAKRGTSG 266

Query: 254  EKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD 312
            + + +   ++ TE+PI I+F ALG  +DK+I+  I +   D  ++ +L   + +A     
Sbjct: 267  QYIYATLPYIRTEVPIIIIFRALGFVADKDILEHICYDFNDSKMMELLRPFLEEAF---- 322

Query: 313  EFRKGRNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSLHGTKQ-----KARFLG 362
              +  + AL Y+ K  +G+T             E +   + P + GT++     KA + G
Sbjct: 323  VIQNQQVALDYIGK--RGSTIGVTRDKRIKYAREILQREMLPHV-GTEEYCETKKAYYFG 379

Query: 363  YMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGD 422
            Y++  LL    GRR  D+RD + NKRL+LAG LL    ++      + +   +Q+ +   
Sbjct: 380  YIINRLLLCALGRRPEDDRDHYANKRLDLAGPLLAGLFRMLFRKLTRDVRSYVQKCVDNG 439

Query: 423  RTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
            + V  +++ + A  +T+GL  + +TG W        R +G+   L R     TL  LRR 
Sbjct: 440  KDVN-LQFAIKAKTITSGLKYSIATGNWGQANAAGTR-AGVSQVLNRLTYASTLSHLRRL 497

Query: 483  RQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQL 541
               +   GK+   R  H SHWG +C   TP+G+ CGLVKNL +   ++  S   PI E L
Sbjct: 498  NSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFL 557

Query: 542  FNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
                 E   + +   +    K+FV+G+WIG+ ++    V  LR+ RR+ ++ T+V I RD
Sbjct: 558  DEWSTENFEEISPAVIPQATKIFVNGNWIGIHRNPELLVRTLRQLRRQVDVNTEVGIIRD 617

Query: 602  ELQSEVRIFMDAGRILRPLLVVENM------GKIKSLEGKN----YTFQALLDHGIIELV 651
                E+R++ D GR  RPL +V+          I +L+ +     Y +  L+ +G +E V
Sbjct: 618  IHLKELRLYTDYGRCSRPLFIVDKQRLVIKKKDILALQQRESADEYGWHDLVRNGSVEYV 677

Query: 652  GTEEEEDCCTAWGIKYLLKDIEDKKPI---KFTHCELDMSFLLGLSCGIIPFANHDHARR 708
             TEEEE    +  I  L+    +        +THCE+  S +LG+   IIPF +H+ + R
Sbjct: 678  DTEEEETTMISMTINDLINSRHNPDAAYSETYTHCEIHPSLVLGVCASIIPFPDHNQSPR 737

Query: 709  VLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPR 768
              YQS     QA+G   TN  +R+DTL++ L+YPQ+PL  T   + L      H   LP 
Sbjct: 738  NTYQSAM-GKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHL------HFRQLP- 789

Query: 769  PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRS 828
                 G NAIVA+  + GYNQEDS++MN++S++RG FRS   RSY+ E       VK   
Sbjct: 790  ----AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE-- 843

Query: 829  SDDMVNFG------KIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD---------- 872
                 +FG       +  + G  D L+DDGF   G  +   D++IGK             
Sbjct: 844  -----DFGCPNRDNTMGMRHGSYDKLEDDGFAPPGTRVSGDDVIIGKTTPFTPDENQNIR 898

Query: 873  -SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLG 931
             +  DHS  L+H+E G+V +V+L++N DG  F  V +R VR P +GDKFSS HGQKG +G
Sbjct: 899  FTRQDHSSSLRHSESGVVDQVLLTTNADGLRFVKVRIRSVRIPQIGDKFSSRHGQKGTIG 958

Query: 932  FLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYAT 991
               +Q++ P++I+GI PDI++NPHA PSR T GQL+E  +GK  A +GK      +  AT
Sbjct: 959  MTYTQDDMPWSIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK------EGDAT 1012

Query: 992  PFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKF 1051
            PF   +VD I++ LH+ G+   G E +Y+G TG  + S+IF+GPT+YQRL HM +DK+  
Sbjct: 1013 PFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRPLTSMIFLGPTYYQRLKHMVDDKIHS 1072

Query: 1052 RNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRK 1111
            R  GPV  LTRQP   R R GG++FGEMERDC+IAHGAA  L ERLF  SD+Y++H+C +
Sbjct: 1073 RGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCER 1132

Query: 1112 C--KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFD 1169
            C    +AN+         K     CR C +  DIV+  +PY  KLL QEL SM I  +  
Sbjct: 1133 CGLMGIANL---------KKHSYECRSCKNKTDIVQIYIPYACKLLIQELMSMAIAPRLL 1183

Query: 1170 T 1170
            T
Sbjct: 1184 T 1184


>gi|145340678|ref|XP_001415447.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144575670|gb|ABO93739.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1174

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/1201 (35%), Positives = 640/1201 (53%), Gaps = 114/1201 (9%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYD--PSKKGEG-EWRYASMRF 88
            SFF E GLV  Q++S+NEFI++ +Q+  D   E  + P +   P +  +  E +   + F
Sbjct: 25   SFFEEKGLVRQQLDSFNEFIQHTMQEIVDEMREIELTPEHQHMPGQDIDSMEKKTYKISF 84

Query: 89   GQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGR 148
             Q+ L KP     +G     +FP+ ARL+N+TYS+ + V +  +V T         +   
Sbjct: 85   NQIYLSKPMVTEADGYTT-TLFPKEARLRNLTYSAPLYVDMVKEVTT--------VQPDG 135

Query: 149  EQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAE 202
            E  ++KE+L+       IG++P+M++SD C + G       E G+C +D GGYF+I G+E
Sbjct: 136  ETTVEKEILNKN----FIGKVPIMLRSDYCSLHGHTDKELTELGECPYDEGGYFVINGSE 191

Query: 203  KVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKR-----NRLIVRLVDMSKFEDIKG 252
            KV +AQE++    ++V      +   W    +S+ +R     +  ++R +     +D  G
Sbjct: 192  KVLIAQERMSTNHVYVFEKKQPSKFMWQAECRSQPERGSRGASSCVMRQLHAPGTKDAPG 251

Query: 253  GEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA----- 307
              +  ++ ++ T+IPI+++F ALG  +DK+I+  I +   D  ++ +L  SI +A     
Sbjct: 252  PIRC-TLPYIRTDIPIFVVFRALGFVADKDILEHIVYDLADNEMMEMLRPSIEEAFVIQS 310

Query: 308  -DNKCDEFRKGRNA--------LKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKA 358
             +   D   K  +A        +KY  ++++    P     E+C             +KA
Sbjct: 311  QEVALDFIGKRGSAVGVSREKRIKYAKEILQKELLPHVGVREDC-----------ETKKA 359

Query: 359  RFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRD 418
             FLGYM+  LL    GRR  D+RD + NKRL+L G LL +  +       K +    QR 
Sbjct: 360  YFLGYMIHRLLLCSLGRRPEDDRDHYGNKRLDLGGPLLAQLFRQLFRKLTKDVRLYCQRC 419

Query: 419  LYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVD 478
            +   + ++ ++  + A  +T GL  + +TG W        R +G+   L R +   TL  
Sbjct: 420  IDSGKEIQ-LQLAIKAKTITQGLKYSLATGNWGSQGAADIR-AGVSQVLNRLSYSSTLSH 477

Query: 479  LRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPI 537
            LRR    +   GK+   R  H S WG IC   TP+G+  GLVKNL +  LVS  S  EPI
Sbjct: 478  LRRINSPIGREGKLAKPRQLHNSLWGMICPAETPEGQAVGLVKNLALMALVSVGSPSEPI 537

Query: 538  FEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVE 597
             E L    ME L + +   +    K+F++G W+GV ++    V  LR+ RR+ ++ + V 
Sbjct: 538  LEFLDEWTMENLEEISPSLIAESTKIFLNGVWVGVHRNPADLVRTLRKLRRQCDIDSSVS 597

Query: 598  IKRDELQSEVRIFMDAGRILRPLLVVENMGKIK----------SLEGKNYTFQALLDHGI 647
            +  D    E+R++ D GR  RPL +VE+  K+K            +   YT+  L+  G 
Sbjct: 598  VVHDIRLKELRLYTDYGRCTRPLFIVEDDQKLKIKKQHIELLTEKDVTGYTWNELVTSGF 657

Query: 648  IELVGTEEEEDCCTAWGIKYLLKD---IEDKK--PIKFTHCELDMSFLLGLSCGIIPFAN 702
            IE V TEEEE    +  I  L+     +E      I +THCE+  S +LG+   IIPF +
Sbjct: 658  IEYVDTEEEETTMISMTIDDLVAGRHAVEQNTGVAINYTHCEIHPSMILGICASIIPFPD 717

Query: 703  HDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGH 762
            H+ + R  YQS     QA+G   TN  IR+DTL + +FYPQ+PL  T   +      Y H
Sbjct: 718  HNQSPRNTYQS-AMGKQAMGMYVTNYQIRMDTLGYVMFYPQKPLVTTRAME------YLH 770

Query: 763  NHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEM 822
               LP      G NA+VA+  + GYNQEDS++MN+++++RG+FRS + RS+K E + K+ 
Sbjct: 771  FRELP-----AGCNAVVAIMCYTGYNQEDSVLMNQSAIDRGLFRSLYYRSFKDE-EKKQG 824

Query: 823  QVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD---------- 872
             + R   +       +  + G  D LDDDG    G  +   DI+IGK A           
Sbjct: 825  SLSREEFERPDRDTCLGMRHGTYDKLDDDGLICPGTRVSGDDIIIGKTAPLPEDDTAVLS 884

Query: 873  ---SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGV 929
               S  D S  +KH E G++ +V+L++ND G  F  + +R +R+P +GDKFSS HGQKG 
Sbjct: 885  KRFSKKDCSTGMKHAETGIIDQVLLTTNDQGLRFVKLRVRSMRTPQVGDKFSSRHGQKGT 944

Query: 930  LGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRY 989
            +G   +QE+ PFT +GI PDI++NPHA PSR T GQL+E  +GK  A +GK      +  
Sbjct: 945  VGMTYTQEDMPFTCEGITPDIIVNPHAIPSRMTIGQLVECIMGKVAACMGK------EGD 998

Query: 990  ATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKV 1049
            ATPF   + + I+  LH+ G+ K G E +Y+G TG M+ + IFIGPT+YQRL HM +DK+
Sbjct: 999  ATPFTPVTAEDISSMLHKCGYQKRGNEVMYNGHTGRMLDAQIFIGPTYYQRLKHMVDDKI 1058

Query: 1050 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHIC 1109
              R  GPV  LTRQP+  R R GG++FGEMERDC+++HGAA+ L ERL   SD+Y++H+C
Sbjct: 1059 HSRGRGPVQILTRQPMEGRSRDGGLRFGEMERDCIMSHGAASFLKERLMDQSDAYRIHVC 1118

Query: 1110 RKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFD 1169
            +KC  +A      V   +      C+       +V+  VPY  KLL QEL SM I  +  
Sbjct: 1119 QKCGLIA------VANLKNQTFECCKNPSERTSVVQVMVPYACKLLFQELMSMAIAPRLI 1172

Query: 1170 T 1170
            T
Sbjct: 1173 T 1173


>gi|350539902|ref|NP_001234825.1| RNA polymerase II second largest subunit [Solanum lycopersicum]
 gi|68300807|gb|AAY89345.1| RNA polymerase II second largest subunit [Solanum lycopersicum]
          Length = 1205

 Score =  674 bits (1738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/1205 (35%), Positives = 653/1205 (54%), Gaps = 123/1205 (10%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP--GYDPSKKGEGEWRYASMRFG 89
            S+F E GLV  Q++S++EFI+N +Q+  D   +  + P   ++PS++ +       ++F 
Sbjct: 51   SYFEEKGLVRQQLDSFDEFIQNTMQEIVDETADIEIRPESQHNPSRQPDFVETIYKIKFT 110

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
            Q+ L +P     + G+ + +FP+ ARL+N+TYSS + V V+ +V           K G +
Sbjct: 111  QIYLSRP-MMTESDGETNTLFPKAARLRNLTYSSPLYVDVKKEV----------IKKGHD 159

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFIIKGAEK 203
               ++   + E T + IG++P+M++S  C +  +      E G+C +D GGYFI+ G+EK
Sbjct: 160  --YEEVTENQEFTKVFIGKVPIMLRSSYCSLYNLSEKDLTELGECPYDQGGYFIVNGSEK 217

Query: 204  VFVAQEQICLKRLWV-----SNSMGWTVAYKS----ENKR-NRLIVRLVDMSKFEDIKGG 253
            V +AQE++    ++V      N   +    +S    +NK  + + VR++  S  +   G 
Sbjct: 218  VLIAQEKMSSNHVYVFKKRQPNKYAYVAEVRSISEGQNKAPSGMFVRMLSRSNSKGAYGQ 277

Query: 254  EKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDE 313
                ++ ++ TEIPI ++F ALG  +DK+I+  I +   D  ++ +L  S+ +A      
Sbjct: 278  YIRATLPYIRTEIPIIVVFRALGFVADKDILAHICYDFADTQMMELLRPSLEEAF----V 333

Query: 314  FRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLHGTKQ-----KARFL 361
             +  + AL Y+ K  +G+T   G + E       E +   + P + GT++     KA + 
Sbjct: 334  IQNQQVALDYIGK--RGSTV--GFTREKRIKYAKEILQREMLPHV-GTREYCETKKAYYF 388

Query: 362  GYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYG 421
            GY++  LL    GRR  D+RD + NKRL+LAG LL    ++      + +   +Q+ + G
Sbjct: 389  GYIIHRLLLCVLGRRPEDDRDHYANKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDG 448

Query: 422  DRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRR 481
             + V  +++ + A  +T+GL  + +TG W        R +G+   L R     TL  LRR
Sbjct: 449  GKDVN-LQFAIKAKTITSGLKYSLATGNWGQANAAGTR-AGVSQVLNRLTFASTLSHLRR 506

Query: 482  TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQ 540
                +   GK+   R  H SHWG +C   TP+G+ CGLVKNL +   ++  S   PI E 
Sbjct: 507  LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEF 566

Query: 541  LFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKR 600
            L     E   + +   +    K+FV+G W+G+ ++    V  LR+ RR+ ++ T+V + R
Sbjct: 567  LEEWSTENFEEISPAVIPQSTKIFVNGCWVGIHRNPDLLVRTLRQLRRQVDVNTEVGVVR 626

Query: 601  DELQSEVRIFMDAGRILRPLLVVENM------GKIKSLEGKNYT----FQALLDHGIIEL 650
            +    E+R++ D GR  RPL +V+          I +L+ +  +    +  L+  G IE 
Sbjct: 627  NINLKELRLYTDYGRCSRPLFIVDKKRLRIKKNDIIALQMRESSEDSGWHDLVAKGFIEY 686

Query: 651  VGTEEEEDCCTAWGIKYLLK---DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHAR 707
            V TEEEE    A  I  L     + ++     +THCE+  S +LG+   IIPF +H+ + 
Sbjct: 687  VDTEEEETTMIAMTINDLTNSRVNPDEAYAETYTHCEIHPSLILGVCASIIPFPDHNQSP 746

Query: 708  RVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILP 767
            R  YQS     QA+G   TN   R+DTL++ L+YPQ+PL  T   + L      H   LP
Sbjct: 747  RNTYQS-AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL------HFRQLP 799

Query: 768  RPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRR 827
                  G NAIVA+  + GYNQEDS++MN++S++RG+FRS   RSY+ E       VK  
Sbjct: 800  -----AGINAIVAITCYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYRDEEKKMGTLVKE- 853

Query: 828  SSDDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD--------- 872
                  +FG+      +  + G  D L+DDGF   G  +   D++IGK            
Sbjct: 854  ------DFGRPDREHTMGMRHGNYDKLEDDGFAPPGTRVSGDDVIIGKTTPISQDEAQGQ 907

Query: 873  ----SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKG 928
                +  DHS  L+H+E G+V +V+L++N DG  F  + +R VR P +GDKFSS HGQKG
Sbjct: 908  SARYTRKDHSTSLRHSETGIVDQVLLTTNADGLRFVKIRMRSVRIPQIGDKFSSRHGQKG 967

Query: 929  VLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKR 988
             +G   +QE+ P++ +GI PDI++NPHA PSR T GQL+E  +GK  A +GK      + 
Sbjct: 968  TIGMTYTQEDMPWSAEGITPDIIVNPHAIPSRMTIGQLVECIMGKVAAHIGK------EG 1021

Query: 989  YATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDK 1048
             ATPF   +VD+I+  LH  G+   G ER+Y+G TG ++ ++IF+GPT+YQRL HM +DK
Sbjct: 1022 DATPFTDVTVDSISRTLHNCGYQMRGFERMYNGHTGRVLPAMIFLGPTYYQRLKHMVDDK 1081

Query: 1049 VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHI 1108
            +  R  GPV  LTRQP   R R GG++FGEMERDC+IAHGAA  L ERLF  SD+Y++H+
Sbjct: 1082 IHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHV 1141

Query: 1109 CRKC--KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITL 1166
            C++C    +AN+         K     CR C +  D V+  +PY  KLL QEL SM I  
Sbjct: 1142 CQQCGLMAIANL---------KKMSFECRSCRNKTDNVQVYIPYACKLLIQELMSMAIAP 1192

Query: 1167 KFDTE 1171
            +  T+
Sbjct: 1193 RMLTK 1197


>gi|388855609|emb|CCF50832.1| probable DNA-dependent RNA polymerase II RPB140 (RPB2) [Ustilago
            hordei]
          Length = 1241

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1236 (34%), Positives = 639/1236 (51%), Gaps = 125/1236 (10%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSK 75
            +  EE  +  C     +FF E GLV HQ++S+NEF+ N +Q+  +      +E     S 
Sbjct: 47   EYSEEITQEDCWDVIRAFFEEKGLVRHQLDSFNEFMSNTIQELVEEVRSLTLEQSDQHSG 106

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT 135
              E + R   + FGQ+ L+KP+    +G     +FP+ AR +N+TYS+ + V V  +V  
Sbjct: 107  HAEDKTRRYEIEFGQIYLNKPTMTESDGSSAQ-LFPQEARFRNLTYSASLFVDVTQKVLV 165

Query: 136  QKRVTSDKFKTGREQYIQKEVLSD-ETTNIIIGRIPVMVKSDLCWMKGVEK------GDC 188
            Q     D    G   +I +   +D E   I IG++P+M+KSD CW+KG++        +C
Sbjct: 166  QSEDEVDL--NGDPAWIPEYGKTDVEEEQIFIGKVPIMLKSDFCWLKGLDDEMSYSLNEC 223

Query: 189  DFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSENKR---------NRLI 238
             +D GGYF+I G+EKV +AQE++    ++V S +    V + +E +          + + 
Sbjct: 224  PYDAGGYFVINGSEKVLIAQERMAANHVYVFSKAPPAPVTFLAEIRSAVEKGGKTISTMQ 283

Query: 239  VRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILN 298
            V+L   +K E         ++ ++  +IPI I+F ALG+  D+E++  I +   D  +L 
Sbjct: 284  VKLFSRNK-EKTANNTIRATLPYIRNDIPIVIVFRALGIVPDREVLQHICYDFNDTPMLE 342

Query: 299  ILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGEST---EECMNTYLFPSLHGTK 355
            +L   I +A    D       AL ++ +    T     + T   +E +   + P +  ++
Sbjct: 343  MLKPCIEEAFVIQDR----DVALDFIGRRGTTTGLSRAKRTVYAQEILQKEMLPHISTSE 398

Query: 356  ----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRM 411
                +KA F GYM+  LL A   RR+ D+RD F  KR++L G L+    ++      + +
Sbjct: 399  GSNTKKAYFFGYMIHRLLLAALDRREIDDRDHFGKKRIDLGGPLMANLFRMLFRKVTRDV 458

Query: 412  AKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRAN 471
             + LQ+ +   R    I+  + +S +TNGL  + +TG W    K  +  +G+   L R  
Sbjct: 459  YRHLQKCVEEHREFH-IQAAVKSSTITNGLRYSLATGNWGDQKKAMQAKAGVSQVLNRFA 517

Query: 472  PLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST 531
               TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   V+ 
Sbjct: 518  FASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMATVTV 577

Query: 532  SILE-PIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRK 590
                 PI E L   G++ L  D   +     K+FV+G W+G   D    V  LR  RR+ 
Sbjct: 578  GTPSAPIVEFLEEFGLDSLV-DMQLAHAKATKIFVNGVWMGTHDDPAQLVDTLRDLRRKD 636

Query: 591  ELPTQVEIKRDELQSEVRIFMDAGRILRPLLV--------------VENMGKIKSLEGKN 636
            ++  +V + RD  + E+RI+ DA R+LRP+ +              VE +G+     G+ 
Sbjct: 637  DISHEVSVVRDIRERELRIYTDASRVLRPVFIVNPHDMTLLIKKRHVEMIGQTIPQTGEE 696

Query: 637  YTFQALLDHGIIELVGTEEEEDCCTAWGIKYL-----------------------LKDIE 673
            + +  L+  G+IE +  EEEE          L                       LK + 
Sbjct: 697  FRWTHLIQEGVIEYLDAEEEESVLICMSTTDLEQSREYKARNGQINLNSADPSARLKSVH 756

Query: 674  DKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVD 733
               P  +THCE+  + +LG+   I+PF +H+ + R +YQS     QAIG P +N   R D
Sbjct: 757  TIAPDTWTHCEIHPAMVLGICASIVPFPDHNQSPRNVYQSAM-GKQAIGIPISNFISRAD 815

Query: 734  TLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSL 793
            +++H L+YPQ+PL  T              H+  R EL  GQNAIVA+  + GYNQEDS+
Sbjct: 816  SMNHILYYPQKPLGTTR----------SMEHLRFR-ELPAGQNAIVAIMCYSGYNQEDSV 864

Query: 794  VMNRASLERGMFRSEHIRSYKAE---VDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDD 850
            +MN++S++RG+FRS + R Y AE   V   +++   +   D      I+ K G  D +D 
Sbjct: 865  IMNQSSIDRGLFRSLYYRGYMAEEKKVGVMQLEEFEKPHRDTT----IRMKHGTYDKIDA 920

Query: 851  DGFPFIGANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLS 895
            DG    G  +   D++IGK A                +  D SI LK TE G++ +V+L+
Sbjct: 921  DGLCAPGTRVSGDDVIIGKTAPLPPDSEELGMRSKLHTKKDASISLKSTENGIIDQVLLT 980

Query: 896  SNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPH 955
            +N  G  F  V +R  R P  GDKF+S HGQKG +G    QE+ PF+ +G+ PDI+INPH
Sbjct: 981  TNSHGNKFVKVRVRNSRVPQTGDKFASRHGQKGTIGITYRQEDMPFSTEGVTPDIIINPH 1040

Query: 956  AFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGT 1015
            A PSR T G L+E  L K +AAL     SG +  ATPF   +V+A++  L   G+   G 
Sbjct: 1041 AIPSRMTIGHLVECLLSK-VAAL-----SGQEGDATPFTELTVEAVSSILRGLGYQSRGL 1094

Query: 1016 ERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIK 1075
            E +Y G TG  +++ +++GPT+YQRL HM +DK+  R  GPV  LTRQPV  R R GG++
Sbjct: 1095 EVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRGGGLR 1154

Query: 1076 FGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKC--KNVANVIQRVVGGGRKVRGPY 1133
            FGEMERDC+IAHG A  L ER+F  SD Y++H+C  C    +AN+           +G Y
Sbjct: 1155 FGEMERDCMIAHGIAGFLKERMFDASDPYRIHVCDLCGLTALANL----------KKGTY 1204

Query: 1134 -CRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
             CR C +   I + ++PY AKLL QEL S+ + L+ 
Sbjct: 1205 ECRSCRNRTAISQIHIPYAAKLLMQELMSVNVALRL 1240


>gi|68300804|gb|AAY89344.1| RNA polymerase II second largest subunit [Petunia x hybrida]
          Length = 1203

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/1204 (34%), Positives = 648/1204 (53%), Gaps = 120/1204 (9%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP--GYDPSKKGEGEWRYASMRFG 89
            ++F E GLV  Q++S++EFI+N +Q+  D   +  + P   ++P+++ +       ++F 
Sbjct: 45   AYFEEKGLVRQQLDSFDEFIQNTMQEIVDETADIEIRPESQHNPARQSDFVDTIYKIKFT 104

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
            Q+ L +P     + G+ + +FP+ ARL+N+TYSS + V V+ +V           K G +
Sbjct: 105  QIYLSRP-MMTESDGETNTLFPKAARLRNLTYSSPLYVDVRKEV----------IKKGHD 153

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFIIKGAEK 203
                 E    E T + IG++P+M++S  C +  +      E G+C +D GGYFI+ G+EK
Sbjct: 154  YEEVSEC--QEFTKVFIGKVPIMLRSSYCSLYNLSEKDLTELGECPYDQGGYFIVNGSEK 211

Query: 204  VFVAQEQICLKRLWV-----SNSMGW-----TVAYKSENKRNRLIVRLVDMSKFEDIKGG 253
            V +AQE++    ++V      N   +     ++A       + + VR++  S  +    G
Sbjct: 212  VLIAQEKMSSNHVYVFKKRQPNKYAYVAEVRSIAEGQTKAPSTMFVRMLSRSNAKVGSSG 271

Query: 254  EKV-LSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD 312
            + +  ++ ++  EIPI I+F ALG  +DK+I+  I +   D  ++ +L  S+ +A     
Sbjct: 272  QYIKATLPYIKNEIPIIIVFRALGFVADKDILAHICYDFADTQMMELLRPSLEEAF---- 327

Query: 313  EFRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLHGTKQ-----KARF 360
              +  + AL Y+ K  +G+T   G S E       E +   + P + GT++     KA +
Sbjct: 328  VIQNQQVALDYIGK--RGSTV--GFSRERRIKYAKEILQREMLPHV-GTREYCETKKAYY 382

Query: 361  LGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLY 420
             GY++  LL    GRR  D+RD + NKRL+LAG LL    ++      + +   +Q+ + 
Sbjct: 383  FGYIIHRLLLCVLGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVD 442

Query: 421  GDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLR 480
              + V  +++ + A  +T+GL  + +TG W        R +G+   L R     TL  LR
Sbjct: 443  SGKDVN-LQFAIKAKTITSGLKYSLATGNWGQANAAGTR-AGVSQVLNRLTFASTLSHLR 500

Query: 481  RTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFE 539
            R    +   GK+   R  H SHWG +C   TP+G+ CGLVKNL +   ++  S   PI E
Sbjct: 501  RLNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILE 560

Query: 540  QLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIK 599
             L     E   + +   +    K+FV+G W+G+ ++    V  LR+ RR+ ++ T+V + 
Sbjct: 561  FLEEWSTENFEEISPAVIPQSTKIFVNGCWVGIHRNPDLLVRTLRQLRRQVDVNTEVGVV 620

Query: 600  RDELQSEVRIFMDAGRILRPLLVVENMGKIKSL----------EGKNYTFQALLDHGIIE 649
            R+    E+R++ D GR  RPL +V+    I               ++  +  L   G IE
Sbjct: 621  RNINLKELRLYTDYGRCSRPLFIVDKKKLIIKKKDILALQLRDSSEDSGWHDLXAKGFIE 680

Query: 650  LVGTEEEEDCCTAWGIKYLLK---DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHA 706
             V TEEEE    A  I  L     +  +     +THCE+  S +LG+   IIPF +H+ +
Sbjct: 681  YVDTEEEETTMIAMTINDLTNSRLNPSEAYSETYTHCEIHPSLILGVCASIIPFPDHNQS 740

Query: 707  RRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHIL 766
             R  YQS     QA+G   TN   R+DTL++ L+YPQ+PL  T   + L      H   L
Sbjct: 741  PRNTYQS-AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL------HFRQL 793

Query: 767  PRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKR 826
            P      G NAIVA++ + GYNQEDS++MN++S++RG FRS   RSY+ E       VK 
Sbjct: 794  P-----AGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE 848

Query: 827  RSSDDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD-------- 872
                   +FG+      +  + G  D LDDDGF   G  +   D++IGK           
Sbjct: 849  -------DFGRPDRENTMGMRHGSYDKLDDDGFAPPGTRVSGDDVIIGKTTPISQDDAQG 901

Query: 873  -----SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQK 927
                 +  DHS  L+H+E G+V +V+L++N DG  F  + +R VR P +GDKFSS HGQK
Sbjct: 902  QSARYTRKDHSTSLRHSETGIVDQVLLTTNADGLRFVKIRMRSVRIPQIGDKFSSRHGQK 961

Query: 928  GVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLK 987
            G +G   +QE+ P+T++GI PDI++NPHA PSR T GQL+E  +GK  A +GK      +
Sbjct: 962  GTIGMTYTQEDMPWTMEGITPDIIVNPHAIPSRMTIGQLVECVMGKVAAHMGK------E 1015

Query: 988  RYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSED 1047
              ATPF   +VD I++ LH+ G+   G ER+Y+G TG ++ ++IF+GPT+YQRL HM +D
Sbjct: 1016 GDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGRILTAMIFLGPTYYQRLKHMVDD 1075

Query: 1048 KVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMH 1107
            K+  R  GPV  LTRQP   R R GG++FGEMERDC+IAHGAA  L ERLF  SD+Y++H
Sbjct: 1076 KIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIH 1135

Query: 1108 ICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLK 1167
            +C++C  +A      +   +K+    CR C +  DIV+  +PY  KLL QEL SM I  +
Sbjct: 1136 VCQQCGLIA------IANLKKISFE-CRSCKNKTDIVQVYIPYACKLLIQELMSMAIAPR 1188

Query: 1168 FDTE 1171
              T+
Sbjct: 1189 MLTK 1192


>gi|70794968|gb|AAZ08458.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
          Length = 1207

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/1201 (35%), Positives = 641/1201 (53%), Gaps = 114/1201 (9%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP--GYDPSKKGEGEWRYASMRFG 89
            ++F E GLV  Q++S++EFI+N +Q+  D   +  ++P   ++P ++ +       + FG
Sbjct: 49   AYFEEKGLVRQQLDSFDEFIQNTMQEIVDEAADIEIKPESQHNPGRQSDFVEMVYRISFG 108

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
            Q+ L KP     + G+   +FP+ ARL+N+TYSS + V V       KRV     K G +
Sbjct: 109  QIYLSKP-MMTESDGETASLFPKAARLRNLTYSSPLYVDVT------KRVV----KKGHD 157

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFIIKGAEK 203
               ++   + E T + IG++P+M++S  C +         E G+C FD GGYFII G+EK
Sbjct: 158  --CEEVTETQEFTKVFIGKVPIMLRSSYCSLYQTSEKDLTELGECPFDQGGYFIINGSEK 215

Query: 204  VFVAQEQICLKRLWV-----SNSMGWTVAYKS-ENKRNR----LIVRLVDMSKFEDIKGG 253
            V +AQE++    ++V      N   +    +S    +NR    + VR+V  S  +    G
Sbjct: 216  VLIAQEKMSTNHVYVFKIRQPNKYAYVSEVRSMAESQNRPPSGMFVRMVSSSSAKGGSSG 275

Query: 254  EKV-LSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD 312
            + +  ++ ++ TEIPI ++F ALG  +DK+I+  I +   D  ++++L  S+ +A     
Sbjct: 276  QYIRATLPYIRTEIPIVVVFRALGFVADKDILEHICYEFTDNKMMDLLRPSLEEAF---- 331

Query: 313  EFRKGRNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSL----HGTKQKARFLGY 363
              +  + AL Y+ K  +G+T    +       +E +   + P +    +   +KA + GY
Sbjct: 332  VIQNQQVALDYIGK--RGSTVGVTKEKRIRYAKEILQREMLPHVGTGEYCETKKAYYFGY 389

Query: 364  MVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDR 423
            ++  LL    GRR  D+RD + NKRL+LAG LL    ++      + +   +Q+ +   +
Sbjct: 390  IIHRLLLCALGRRPEDDRDHYANKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGK 449

Query: 424  TVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTR 483
             V  +++ + A  +T+GL  + +TG W        R +G+   L R     TL  LRR  
Sbjct: 450  DVN-LQFAIKAKTITSGLKYSLATGNWGQANSAGSR-AGVSQVLNRLTYASTLSHLRRLN 507

Query: 484  QQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLF 542
              +   GK+   R  H SHWG +C   TP+G+ CGLVKNL +   ++  S   PI E L 
Sbjct: 508  SPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLE 567

Query: 543  NSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
                E   + +   +    K+FV+G W+G+ ++    V  LR+ RR+ ++ T+V + RD 
Sbjct: 568  EWSTENFEEISPAVIPLATKIFVNGCWVGIHRNPELLVRTLRQLRRQVDVNTEVGVIRDI 627

Query: 603  LQSEVRIFMDAGRILRPLLVVENMG------KIKSLEGKNYT----FQALLDHGIIELVG 652
               E+R++ D GR  RPL +VE          I +L+ +       +  L+  G IE V 
Sbjct: 628  RLKELRLYTDCGRCSRPLFIVEKQKLQIKKKDILALQQRESPEEVGWHDLVAKGYIEYVD 687

Query: 653  TEEEEDCCTAWGIKYLLKD---IEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRV 709
            TEEEE    +  I  L       +D     +THCE+  S +LG+   IIPF +H+ + R 
Sbjct: 688  TEEEETTMISMTINDLTSARLCPDDAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRN 747

Query: 710  LYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRP 769
             YQS     QA+G   TN  +R+DTL++ L+YPQ+PL  T   + L      H   LP  
Sbjct: 748  TYQS-AMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHL------HFRQLP-- 798

Query: 770  ELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSS 829
                G NAIVA+  + GYNQEDS++MN++S++RG FRS   RSY+ E       VK    
Sbjct: 799  ---AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSIFYRSYRDEEKKMGTLVKE--- 852

Query: 830  DDMVNFG------KIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGAD------- 876
                +FG       +  + G  D LDDDGF   G  +   D++IGK      D       
Sbjct: 853  ----DFGCPNRENTMGMRHGSYDKLDDDGFAPPGTRVAGEDVIIGKTTPIAPDDAQGQTA 908

Query: 877  ------HSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVL 930
                  HS  L+H+E GMV +V+L++N DG  F  + +R +R P +GDKFSS HGQKG +
Sbjct: 909  RYTRRDHSTCLRHSESGMVDQVLLTTNADGLRFVKMRMRSIRIPQIGDKFSSRHGQKGTI 968

Query: 931  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYA 990
            G   +QE+ P+TI+GI PDI++NPHA PSR T GQL+E  +GK  A +GK      +  A
Sbjct: 969  GMAYTQEDMPWTIEGICPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK------EGDA 1022

Query: 991  TPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVK 1050
            TPF   +VD I++ LH+ G+   G ER+Y+G TG  +   IF+GPT+YQRL HM +DK+ 
Sbjct: 1023 TPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGRPLTYTIFLGPTYYQRLKHMVDDKIH 1082

Query: 1051 FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICR 1110
             R  GPV  LTRQP   R R GG++FGEMERDC+IAHGAA  L ERLF  SD+Y++H+C 
Sbjct: 1083 SRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCA 1142

Query: 1111 KCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
             C  VA           K     CR C +  DIV+  +PY  KLL QEL +M I  +  T
Sbjct: 1143 LCGIVAI-------ANLKKNSFECRHCKNKTDIVQVYIPYACKLLLQELMAMAIAPRLLT 1195

Query: 1171 E 1171
            +
Sbjct: 1196 K 1196


>gi|356530409|ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine
            max]
          Length = 1192

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/1201 (34%), Positives = 642/1201 (53%), Gaps = 114/1201 (9%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP--GYDPSKKGEGEWRYASMRFG 89
            ++F E GLV  Q++S++EFI+N +Q+  D   +  + P   ++P  + +       + FG
Sbjct: 34   AYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETIYKISFG 93

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
            Q+ L KP     + G+   +FP+ ARL+N+TYS+ + V V       KRV     K G +
Sbjct: 94   QIYLSKP-MMTESDGETATLFPKAARLRNLTYSAPLYVDVS------KRV----IKKGHD 142

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
               ++   + + T + IG++P+M++S  C +         E G+C +D GGYFII G+EK
Sbjct: 143  G--EEVTEAQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 200

Query: 204  VFVAQEQICLKRLWV-----SNSMGWTVAYKS-ENKRNR----LIVRLVDMSKFEDIKGG 253
            V +AQE++    ++V      N   +    +S    +NR    + VR++  +  +    G
Sbjct: 201  VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSG 260

Query: 254  EKV-LSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD 312
            + +  ++ ++ TEIPI I+F ALG  +DK+I+  I +      ++ +L  S+ +A     
Sbjct: 261  QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSYTQMMELLRPSLEEAF---- 316

Query: 313  EFRKGRNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSL----HGTKQKARFLGY 363
              +  + AL Y+ K  +G T    +       +E +   + P +    +   +KA + GY
Sbjct: 317  VIQNQQVALDYIGK--RGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGY 374

Query: 364  MVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDR 423
            ++  LL    GRR  D+RD + NKRL+LAG LL    ++      + +   +Q+ +   +
Sbjct: 375  IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGK 434

Query: 424  TVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTR 483
             V  +++ + A  +T+GL  + +TG W        R +G+   L R     TL  LRR  
Sbjct: 435  DVN-LQFAIKAKTITSGLKYSLATGNWGQANAAGTR-AGVSQVLNRLTYASTLSHLRRLN 492

Query: 484  QQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLF 542
              +   GK+   R  H S WG +C   TP+G+ CGLVKNL +   ++  S   PI E L 
Sbjct: 493  SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLE 552

Query: 543  NSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
              G E   + +   +    K+FV+G W+G+ +D    V  L++ RRR ++ T+V + RD 
Sbjct: 553  EWGTENFEEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTLKKLRRRVDVNTEVGVVRDI 612

Query: 603  LQSEVRIFMDAGRILRPLLVVENM------GKIKSLEGKNYT----FQALLDHGIIELVG 652
               E+RI+ D GR  RPL +V+          I +L+ +       +  L+  G IE + 
Sbjct: 613  RLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHALQQRESPEDGGWHDLVSKGFIEYID 672

Query: 653  TEEEEDCCTAWGIKYLLK---DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRV 709
            TEEEE    +  I  L++   + ED     +THCE+  S +LG+   IIPF +H+ + R 
Sbjct: 673  TEEEETTMISMTINDLVQARINPEDAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 732

Query: 710  LYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRP 769
             YQS     QA+G   TN   R+DTL++ L+YPQ+PL  T   + L      H   LP  
Sbjct: 733  TYQS-AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL------HFRQLP-- 783

Query: 770  ELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSS 829
                G NAIV++  + GYNQEDS++MN++S++RG FRS   RSY+ E       VK    
Sbjct: 784  ---AGINAIVSIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE--- 837

Query: 830  DDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD----------- 872
                +FG+      +  + G  D LDDDG    G  +   D++IGK              
Sbjct: 838  ----DFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQAL 893

Query: 873  --SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVL 930
              +  DHSI L+H+E G+V +V+L++N DG  F  V +R VR P +GDKFSS HGQKG +
Sbjct: 894  RYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 953

Query: 931  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYA 990
            G   +QE+ P+T++GI PDI++NPHA PSR T GQL+E  +GK  A +GK      +  A
Sbjct: 954  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK------EGDA 1007

Query: 991  TPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVK 1050
            TPF   +VD I++ LH+ G+   G E +Y+G TG  + ++IF+GPT+YQRL HM +DK+ 
Sbjct: 1008 TPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIH 1067

Query: 1051 FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICR 1110
             R  GPV  LTRQP   R R GG++FGEMERDC+IAHGAA  L ERLF  SD+Y++H+C 
Sbjct: 1068 SRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCE 1127

Query: 1111 KCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
            +C  +A           K     CR C +  DIV+  +PY  KLL QEL +M I  +  T
Sbjct: 1128 RCGLIAI-------ANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAIAPRMLT 1180

Query: 1171 E 1171
            +
Sbjct: 1181 K 1181


>gi|393244464|gb|EJD51976.1| DNA-dependent RNA polymerase II second largest subunit [Auricularia
            delicata TFB-10046 SS5]
          Length = 1217

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/1234 (34%), Positives = 652/1234 (52%), Gaps = 142/1234 (11%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPG-YDPSKKGEGEWRYA 84
            C     SFF E GLV  Q++S++EF++N +Q+  D   E I+  G     ++G+   R+ 
Sbjct: 29   CWTIISSFFEEKGLVRQQLDSFDEFVQNTMQELVDENAELILHQGDQHTGQEGDANLRH- 87

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKF 144
             ++FGQ+ L +P+    +G     +FP+ ARL+N+TYS+ + V+++     + R+T  + 
Sbjct: 88   EIKFGQIYLSRPTITEADGSVT-PVFPQEARLRNLTYSAPLYVEMR-----RSRLTGRES 141

Query: 145  KTGREQYIQKEVLSDETT--NIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYF 196
             T    Y  +   ++ TT   I IG++P+M++S  C +K +   D      C +D GGYF
Sbjct: 142  MTKPGDYDWQRDPNESTTMQKIWIGKVPIMLRSSFCILKTLSDRDLYDLNECPYDQGGYF 201

Query: 197  IIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKRNRLIVRLVDMSKF---- 247
            II G+EKV +AQE++    ++V      + + +    +S  ++    +    +  F    
Sbjct: 202  IINGSEKVLIAQERMAANHVYVFAKAQPSPINFLAEIRSAVEKGGKTISSFQVKMFHRNQ 261

Query: 248  EDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA 307
            E   G     ++ ++  +IPIWI+F ALGV SD++I+  I +   D ++L +L   I   
Sbjct: 262  EKTSGNTIKATIPYIKQDIPIWIVFRALGVMSDRDILEHICYDMHDVTMLEMLKPCI--- 318

Query: 308  DNKCDE---FRKGRNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSLH----GTK 355
                DE    ++   AL ++   ++GTT    +       +E +   + P +        
Sbjct: 319  ----DEGFVIQEREQALSFIG--VRGTTTGLNKERRLRYAQEILQKEMLPHISMAEGSES 372

Query: 356  QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKAL 415
            +KA FLGYM+  LL A   RR+ D+RD F  KRL+LAG LL    ++      K + + L
Sbjct: 373  KKAYFLGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLASLFRMLFRKLTKDVYRYL 432

Query: 416  QRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQT 475
            Q+ +   +    +   + A+ +TNGL  + +TG W    K     +G+   L R     T
Sbjct: 433  QKCVEARKEFN-LSLAVKANTITNGLKYSLATGNWGDQKKSMSAKAGVSQVLNRYTFAST 491

Query: 476  LVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SIL 534
            L  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  S+ 
Sbjct: 492  LSHLRRTNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSLS 551

Query: 535  EPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPT 594
             P+ E L   G+E L ++A +S     KVFV+G W+GV +D  + V  +++ RR+ ++  
Sbjct: 552  APVIEFLEEWGLESLEENA-HSGVPSTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISP 610

Query: 595  QVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKI------------KSLEGKNYTFQAL 642
            +V + RD  + E+R++ DAGR+ RPL +VE+   +            +   G  Y +  L
Sbjct: 611  EVSVVRDIREKELRLYTDAGRVCRPLFIVEDQQLVIKKHHVEWIQNKEDESGAPYKWDNL 670

Query: 643  LDHGIIELVGTEEEED---CCTAWGIKYLLKDIEDKKPIK-------------------- 679
            +  G+IEL+  EEEE    C T+        D+E+ + +                     
Sbjct: 671  IKTGVIELLDAEEEETVMICMTS-------DDLENSRLMSRGLAPRDADNEFDPAARLKS 723

Query: 680  ------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVD 733
                  +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R D
Sbjct: 724  VVNAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS-AMGKQAMGIYLTNFQVRQD 782

Query: 734  TLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSL 793
            T+++ L+YPQ+PL  T   +            L   EL  GQNAIVA+  + GYNQEDS+
Sbjct: 783  TMANILYYPQKPLATTRSME-----------YLKFRELPAGQNAIVAILCYSGYNQEDSV 831

Query: 794  VMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGF 853
            +MN++S++RG+FRS + RSY  +V+ K   V     +       ++ K G  D L+DDG 
Sbjct: 832  IMNQSSIDRGLFRSIYYRSY-MDVEKKSGMVALEEFEKPTRDTTLRMKHGTYDKLEDDGL 890

Query: 854  PFIGANLQSGDIVIGKYA----DSGA-----------DHSIKLKHTERGMVQKVVLSSND 898
               G  +   DI+IGK A    DS             D S  LK TE G+V +V++++N 
Sbjct: 891  IAPGTGVAGEDIIIGKTAPLPQDSEELGQRTRTHQKRDVSTPLKSTENGIVDQVLITTNQ 950

Query: 899  DGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFP 958
            DG+ F  + +R  R P +GDKF+S HGQKG +G    QE+ PFT +G+ PDI+INPHA P
Sbjct: 951  DGQKFVKIRIRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGVTPDIIINPHAIP 1010

Query: 959  SRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERL 1018
            SR T G L+E  L K    +G       +  ATPF   +V+++++ L + G+   G E +
Sbjct: 1011 SRMTIGHLVECLLSKVATMIGN------EGDATPFTDLTVESVSQVLRQRGYHSRGLEVM 1064

Query: 1019 YDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGE 1078
            Y G TG  +++ +++GPT+YQRL HM +DK+  R  GPV  LTRQPV  R R GG++FGE
Sbjct: 1065 YHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGE 1124

Query: 1079 MERDCLIAHGAAANLHERLFTLSDSYQMHICRKC--KNVANVIQRVVGGGRKVRGPYCRI 1136
            MERDC+I+HG AA L ERLF  SD+Y++H+C  C    +AN+         K +   CR 
Sbjct: 1125 MERDCMISHGLAAFLKERLFDASDAYRLHVCDICGLTAIANL---------KKQSFECRA 1175

Query: 1137 CDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
            C +   + +  +PY AKLL QEL SM I  +  T
Sbjct: 1176 CKNKVAVSQLYIPYAAKLLIQELQSMNIAARLYT 1209


>gi|440801047|gb|ELR22072.1| DNAdirected RNA polymerase, beta subunit [Acanthamoeba castellanii
            str. Neff]
          Length = 1196

 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/1191 (35%), Positives = 632/1191 (53%), Gaps = 111/1191 (9%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP--GYDPSKKGEGEWRYASMRFG 89
            ++F E GLV  Q++S++ FI+N +Q+  D   + I++P   + P    + + RY  + FG
Sbjct: 52   AYFEEKGLVRQQLDSFDAFIQNTMQELVDESPDLILQPESQHKPGAGPQTQTRYI-INFG 110

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
            Q+ L +P+    +G  +  M P  ARL+N+TYS+ + V +     T           G E
Sbjct: 111  QIYLSRPTMTEADGSTQA-MLPNEARLRNLTYSAPLFVDMSKTTIT---------AAGEE 160

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG-------VEKGDCDFDHGGYFIIKGAE 202
                +   ++E + + IG++P+M++S+ C + G        E G+C +D GGYF+I G+E
Sbjct: 161  GETHQS--TEELSRVFIGKVPIMLRSNYCMLAGAPSDKDLTELGECPYDQGGYFVINGSE 218

Query: 203  KVFVAQEQICLKRLWV-----SNSMGWTVAYKS--ENKRNRLIVRLVDMSKFEDIKGGEK 255
            KV +AQE++    ++V      +   +    +S  E          V M +    KG   
Sbjct: 219  KVLIAQEKMSHNHVYVFKKQAPSKYAYVAEIRSCLETGSRPTSTMYVKMMQRSGSKGQTL 278

Query: 256  VLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFR 315
              ++ ++  +IPI I+F ALG  +D+EI+ LI +  ++  ++ +L  S+ +A    D+  
Sbjct: 279  KATIPYIRQDIPIIIVFRALGFVADREILELIVYDFDNKDMMEMLRPSLEEAFVIQDQ-- 336

Query: 316  KGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFP----SLHGTKQKARFLGYM 364
                AL Y+ K  +GTT   G + E       E +   + P    S +   +KA F GY+
Sbjct: 337  --AVALDYIGK--RGTT--TGATREKRIKYAKEILQKEMLPHVGISQYCETKKAYFFGYI 390

Query: 365  VKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRT 424
            +  LL A  G+R  D+RD + NKRL+LAG LL    +       K +   LQ+ +   + 
Sbjct: 391  IHRLLLAAQGKRPLDDRDHYGNKRLDLAGPLLGTLFRQLFKKLNKDVRGYLQKCVDSGKE 450

Query: 425  VRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQ 484
               +   + +  +TNGL  + +TG W+   +     SG+   L R     TL  LRR   
Sbjct: 451  FN-LMMAVKSKTITNGLKYSLATGNWTST-RSVGAKSGVSQVLNRLTFASTLSHLRRLNT 508

Query: 485  QVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFN 543
             +   GK+   R  H +HWG IC   TP+G+ CGLVKNL +   +S  S   PI E L  
Sbjct: 509  PIGREGKLAKPRQLHNTHWGMICPAETPEGQACGLVKNLALMAYISVGSASAPILEFLEE 568

Query: 544  SGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDEL 603
               E L + +  ++    K+FV+G W+G+ +     V  LR  RR  ++  +V + RD  
Sbjct: 569  WSTENLEEISPSNIPAATKIFVNGAWVGIHRQPDHLVQTLRSLRRCVDVSAEVSVVRDIR 628

Query: 604  QSEVRIFMDAGRILRPLLVV---------------ENMGKIKSLEGKNYTFQALLDHGII 648
            + E+R++ DAGR  RPL +V               + + + +SL  K ++   L+  G +
Sbjct: 629  EQELRLYTDAGRCCRPLFIVDKQRLLLKKSDIRDIQKLQQDESLSEKGWSH--LVSQGFV 686

Query: 649  ELVGTEEEEDCCTAWGIKYLLKD-IEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHAR 707
            E +  EEEE    A  I  L K   E+     +THCE+  S +LG+   IIPF +H+ + 
Sbjct: 687  EYIDCEEEETVMIAMTIDDLKKSRSEEAYSYTYTHCEIHPSMILGICASIIPFPDHNQSP 746

Query: 708  RVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILP 767
            R  YQS     QA+G  TTN  +R+DTL+H L+YPQ+PL  T   + L      H   LP
Sbjct: 747  RNTYQS-AMGKQAMGVYTTNYQLRMDTLAHVLYYPQKPLITTHSMEHL------HFRKLP 799

Query: 768  RPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDN-KEMQVKR 826
                 +GQN I+A+  + GYNQEDSLVMN++S++RG FRS   RSY   VD+ K M    
Sbjct: 800  -----SGQNGIIAIACYSGYNQEDSLVMNQSSVDRGFFRSVFYRSY---VDSEKHMGQYD 851

Query: 827  RSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD-------------S 873
               +  +    +  + G  + ++DDG    G  +   DI+IGK                S
Sbjct: 852  EEFEKPIREDTMGMRHGSYEKIEDDGLIAPGTRVSGDDIIIGKTTPVSPNEEDTRAQRFS 911

Query: 874  GADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
              D SI ++ +E G++ KV+LS+N DG  F  V +R VR+P +GDKFSS HGQKG +G +
Sbjct: 912  KKDSSISVRSSETGIIDKVMLSTNSDGYKFCKVRVRSVRTPQIGDKFSSRHGQKGTVGIM 971

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
              QE+ PF I+GI PDI++NPHA PSR T GQL+E  +GK  A  G+      +  ATPF
Sbjct: 972  YRQEDMPFNIEGITPDIIVNPHAIPSRMTIGQLIECLMGKVSATTGE------EGDATPF 1025

Query: 994  ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
               +V++I++ LH  G+ + G E +Y+G TG  + +  FIGPT+YQRL HM +DK+  R 
Sbjct: 1026 TNTTVESISDLLHGVGYQRRGNEVMYNGHTGRKLEAQFFIGPTYYQRLKHMVDDKIHSRA 1085

Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
             GPV  LTRQPV  R R GG++FGEMERDC+I+HGAA  L ERL+  SD+Y++H+C  C 
Sbjct: 1086 RGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGAAQFLKERLYDQSDAYRVHVCDLCG 1145

Query: 1114 NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
             +A      +   RK     CR C +   I + ++PY  KLL QEL SM I
Sbjct: 1146 MIA------IANLRK-NTFECRSCRNKTQISQVHIPYACKLLFQELMSMCI 1189


>gi|15234572|ref|NP_193902.1| DNA-directed RNA polymerase II subunit RPB2 [Arabidopsis thaliana]
 gi|21542437|sp|P38420.2|RPB2_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2; AltName: Full=DNA-directed RNA polymerase II 135 kDa
            polypeptide; AltName: Full=Protein EMBRYO DEFECTIVE 1989
 gi|4455279|emb|CAB36815.1| DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain
            [Arabidopsis thaliana]
 gi|7268968|emb|CAB81278.1| DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain
            [Arabidopsis thaliana]
 gi|332659093|gb|AEE84493.1| DNA-directed RNA polymerase II subunit RPB2 [Arabidopsis thaliana]
          Length = 1188

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/1219 (35%), Positives = 644/1219 (52%), Gaps = 118/1219 (9%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP--GYDP 73
            D  EE  +        ++F E GLV  Q++S++EFI+N +Q+  D   +  + P   ++P
Sbjct: 16   DDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 75

Query: 74   SKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQV 133
              + +       + FGQ+ L KP     + G+   +FP+ ARL+N+TYS+ + V V    
Sbjct: 76   GHQSDFAETIYKISFGQIYLSKP-MMTESDGETATLFPKAARLRNLTYSAPLYVDVT--- 131

Query: 134  YTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM------KGVEKGD 187
               KRV     K G +   ++   + + T + IG++P+M++S  C +         E G+
Sbjct: 132  ---KRV----IKKGHDG--EEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGE 182

Query: 188  CDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWT--VAYKSENKRNRLIVR 240
            C +D GGYFII G+EKV +AQE++    ++V      N   +   V   +EN+       
Sbjct: 183  CPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAENQNRPPSTM 242

Query: 241  LVDMSKFEDIKGGEK----VLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
             V M      KGG        ++ ++ TEIPI I+F ALG  +DK+I+  I +   D  +
Sbjct: 243  FVRMLARASAKGGSSGQYIRCTLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQM 302

Query: 297  LNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFP 349
            + +L  S+ +A    ++      AL Y+ K  +G T   G + E       + +   + P
Sbjct: 303  MELLRPSLEEAFVIQNQL----VALDYIGK--RGATV--GVTKEKRIKYARDILQKEMLP 354

Query: 350  SL----HGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIA 405
             +    H   +KA + GY++  LL    GRR  D+RD + NKRL+LAG LL    ++   
Sbjct: 355  HVGIGEHCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFR 414

Query: 406  HARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVA 465
               + +   +Q+ +   + V  +++ + A  +T+GL  + +TG W        R +G+  
Sbjct: 415  KLTRDVRSYVQKCVDNGKEVN-LQFAIKAKTITSGLKYSLATGNWGQANAAGTR-AGVSQ 472

Query: 466  NLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV 525
             L R     TL  LRR    +   GK+   R  H S WG +C   TP+G+ CGLVKNL +
Sbjct: 473  VLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLAL 532

Query: 526  TGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELR 584
               ++  S   PI E L   G E   + +   +    K+FV+G W+GV +D    V  LR
Sbjct: 533  MVYITVGSAAYPILEFLEEWGTENFEEISPSVIPQATKIFVNGMWVGVHRDPDMLVKTLR 592

Query: 585  RKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMG------KIKSLEGKNYT 638
            R RRR ++ T+V + RD    E+RI+ D GR  RPL +V+N         I +L+ +   
Sbjct: 593  RLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDNQKLLIKKRDIYALQQRESA 652

Query: 639  ----FQALLDHGIIELVGTEEEEDCCTAWGIKYLLKD---IEDKKPIKFTHCELDMSFLL 691
                +  L+  G IE + TEEEE    +  I  L++     E+     +THCE+  S +L
Sbjct: 653  EEDGWHHLVAKGFIEYIDTEEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSLIL 712

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G+   IIPF +H+ + R  YQS     QA+G   TN   R+DTL++ L+YPQ+PL  T  
Sbjct: 713  GVCASIIPFPDHNQSPRNTYQS-AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 771

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
             + L      H   LP      G NAIVA++ + GYNQEDS++MN++S++RG FRS   R
Sbjct: 772  MEHL------HFRQLP-----AGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFR 820

Query: 812  SYKAEVDNKEMQVKRRSSDDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDI 865
            SY+ E       VK        +FG+      +  + G  D LDDDG    G  +   D+
Sbjct: 821  SYRDEEKKMGTLVKE-------DFGRPDRGSTMGMRHGSYDKLDDDGLAPPGTRVSGEDV 873

Query: 866  VIGKYAD-------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVR 912
            +IGK                +  DHSI L+H+E GMV +V+L++N DG  F  V +R VR
Sbjct: 874  IIGKTTPISQDEAQGQSSRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 933

Query: 913  SPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALG 972
             P +GDKFSS HGQKG +G   +QE+ P+TI+G+ PDI++NPHA PSR T GQL+E  +G
Sbjct: 934  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMG 993

Query: 973  KGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIF 1032
            K  A +GK      +  ATPF   +VD I++ LH+ G+   G ER+Y+G TG  + ++IF
Sbjct: 994  KVAAHMGK------EGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGRPLTAMIF 1047

Query: 1033 IGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAAN 1092
            +GPT+YQRL HM +DK+  R  GPV  LTRQP   R R GG++FGEMERDC+IAHGAA  
Sbjct: 1048 LGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHF 1107

Query: 1093 LHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGA 1152
            L ERLF  SD+Y++H+C  C  +A           K     CR C +  DIV+  +PY  
Sbjct: 1108 LKERLFDQSDAYRVHVCEVCGLIAI-------ANLKKNSFECRGCKNKTDIVQVYIPYAC 1160

Query: 1153 KLLCQELFSMGITLKFDTE 1171
            KLL QEL SM I  +  T+
Sbjct: 1161 KLLFQELMSMAIAPRMLTK 1179


>gi|255073731|ref|XP_002500540.1| predicted protein [Micromonas sp. RCC299]
 gi|226515803|gb|ACO61798.1| predicted protein [Micromonas sp. RCC299]
          Length = 1178

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/1204 (35%), Positives = 651/1204 (54%), Gaps = 115/1204 (9%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP--GYDPSKK--GEGEWRYASMR 87
            SFF E GL   Q++S+NEFI++ +Q+  D   +  +EP   + P ++  G+G+ +Y  + 
Sbjct: 25   SFFEEKGLARQQLDSFNEFIQHTMQEIVDEMSDFTIEPEEQHMPGEEADGKGKKKY-KVE 83

Query: 88   FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
            F Q+ L KP     +G     +FP+ ARL+N+TYS+ + + +     T    T+D+    
Sbjct: 84   FKQIYLSKPMVTEADGMTS-TLFPKEARLRNLTYSAPLYIDMAKSTIT----TTDEIDAT 138

Query: 148  REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGA 201
              +YI+  + ++E   +  G++P+M++S  C +         E G+C +D GGYFII G+
Sbjct: 139  TGKYIET-IDTEEYPKVFFGKVPIMLRSQYCSLHDHTDKELTELGECPYDEGGYFIINGS 197

Query: 202  EKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKR-----NRLIVRLVDMSKFEDIK 251
            EKV +AQE++    ++V      +   W    +S  +      +  + RL      +D +
Sbjct: 198  EKVLIAQEKMSTNHVYVFEKRQPSKYMWVAECRSSPESGARAASSCMARLCHAPGTKD-E 256

Query: 252  GGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKC 311
             G   +++ ++ TEIP++++F ALG  +DK+I+  + +  ED  ++ +L  SI +A    
Sbjct: 257  AGVISVTIPYIRTEIPLFVVFRALGFVADKDILEHLVYDFEDHEMMQLLRNSIEEAQV-- 314

Query: 312  DEFRKGRNALKYVDKL--IKGTTFPPG-ESTEECMNTYLFPSLHGTK----QKARFLGYM 364
               +    AL ++ K     G T P   +   E +   L P +   +    +KA FLGY+
Sbjct: 315  --IQSQDVALDFIGKRGSAVGVTRPKRIQYAREILQKELLPHVGVNEGCETKKAYFLGYI 372

Query: 365  VKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRD--LYGD 422
            V  LL    GR+K D+RD F NKR++L+G L        IA   +++ + + +D  LY  
Sbjct: 373  VNRLLLCALGRKKEDDRDHFGNKRMDLSGPL--------IAMLFRQLFRKVTKDVRLYSQ 424

Query: 423  RTV---RPIEYYL--DASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLV 477
            R +   + I+  L   A  +T+GL  + +TG W     +  R +G+   L R +   TL 
Sbjct: 425  RCIDSGKDIQLTLAVKAKTITSGLKYSLATGNWGAQGAQDIR-AGVSQVLNRLSFSSTLS 483

Query: 478  DLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEP 536
             LRR    +   GK+   R  H SHWG +C   TP+G+  GLVKNL +  LVS  S   P
Sbjct: 484  HLRRLNSPIGREGKLAKPRQLHNSHWGMVCPAETPEGQAVGLVKNLSLMCLVSVGSPSAP 543

Query: 537  IFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQV 596
            + E L    ME L + +   +    K+FV+G W+GV ++    V  LR  RR+ ++  +V
Sbjct: 544  LLEFLEEWSMENLEEISPSVIVNATKIFVNGVWVGVHREPAQLVQTLRNLRRKLDITIEV 603

Query: 597  EIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKSLEGKNYTFQALLDHGI 647
             +  D    E+R++ D GR +RPL +VE+         +  +   E   YT+  L+  G 
Sbjct: 604  GVVHDIALRELRLYTDYGRCIRPLFIVEDNHLVIKKKDIQMLYEKEITGYTWNDLVATGC 663

Query: 648  IELVGTEEEEDCCTAWGIKYLLKDIEDKKP--IK--FTHCELDMSFLLGLSCGIIPFANH 703
            IE V TEEEE    A  I  L+    + +P  +K  +THCE+  S +LG+   IIPF +H
Sbjct: 664  IEYVDTEEEETTMIAMTIDELVGQRINAEPGGVKHMYTHCEIHPSMILGICASIIPFPDH 723

Query: 704  DHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHN 763
            + + R  YQS     QA+G   TN  IR+DTL++ LFYPQ+PL  T   +        H 
Sbjct: 724  NQSPRNTYQS-AMGKQAMGMYVTNFQIRMDTLAYVLFYPQKPLVTTRAME--------HL 774

Query: 764  HILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNK--- 820
            H     EL  G N +V +  + GYNQEDS++MN++S++RG+FRS   RS+K E   +   
Sbjct: 775  HFR---ELPAGVNVVVGIMCYTGYNQEDSVIMNQSSIDRGLFRSIFYRSFKDEEKKQGSL 831

Query: 821  -EMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA-----DSG 874
             + +++R S D  +       + G  D LDDDG    G  +   DI+IGK +     D  
Sbjct: 832  TKEELERPSRDTTLGM-----RHGTYDKLDDDGLICPGTRVSGEDIIIGKTSPLPEDDPS 886

Query: 875  A--------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQ 926
            A        D S  +K++E G++ +V+L++ND G  F  + +R  R+P +GDKFSS HGQ
Sbjct: 887  AVSKRFTKRDCSTGMKNSETGIIDQVLLTTNDQGLRFVKIRVRSCRTPQVGDKFSSRHGQ 946

Query: 927  KGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGL 986
            KG +G   +QE+ PFT +GIVPDI++NPHA PSR T GQL+E  +GK  A +GK      
Sbjct: 947  KGTIGMTYTQEDMPFTCEGIVPDIIVNPHAIPSRMTIGQLVECLMGKVAAMMGK------ 1000

Query: 987  KRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSE 1046
            +  ATPF   +V++I++ LH  G+ K G E +Y+G TG  + + IF+GPT+YQRL HM +
Sbjct: 1001 EGDATPFTPVTVESISDMLHMCGYQKRGNEVMYNGHTGRKLEAKIFLGPTYYQRLKHMVD 1060

Query: 1047 DKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQM 1106
            DK+  R  GPV  LTRQP+  R R GG++FGEMERDC+I+HGAAA L ERL   SD+Y++
Sbjct: 1061 DKIHSRGRGPVQILTRQPMEGRSRDGGLRFGEMERDCIISHGAAAFLKERLMDQSDAYRI 1120

Query: 1107 HICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITL 1166
            H+C  C  +A      V   +      C+       +V+  +PY  KLL QEL SM +  
Sbjct: 1121 HVCETCGLIA------VANLKNQTFECCKNPSERTKVVQVMMPYACKLLFQELMSMAVAP 1174

Query: 1167 KFDT 1170
            +  T
Sbjct: 1175 RLVT 1178


>gi|443898353|dbj|GAC75688.1| RNA polymerase II, second largest subunit [Pseudozyma antarctica
            T-34]
          Length = 1240

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1233 (34%), Positives = 641/1233 (51%), Gaps = 125/1233 (10%)

Query: 19   EEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGE 78
            EE  +  C     +FF E GLV HQ++S+NEF+ N +Q+  +      +E     S   E
Sbjct: 49   EEITQEDCWDVIRAFFEEKGLVRHQLDSFNEFMSNTIQELVEEVRSLTLEQSDQHSGHAE 108

Query: 79   GEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKR 138
             + R   + FGQ+ L+KP+    +G     +FP+ AR +N+TYS+ + V V  +V  Q  
Sbjct: 109  DKTRRYEIEFGQIYLNKPTMTESDGSSAQ-LFPQEARYRNLTYSASLFVDVTQKVLVQSE 167

Query: 139  VTSDKFKTGREQYIQKEVLSD-ETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFD 191
               D    G   ++ +   +D +   I IG++P+M+KSD CW+KG++        +C +D
Sbjct: 168  DELDL--NGDAAWVPEHGKTDVDEQQIFIGKVPIMLKSDFCWLKGLDDEMSYSLNECPYD 225

Query: 192  HGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSENKR---------NRLIVRL 241
             GGYF+I G+EKV +AQE++    ++V S +    V + +E +          + + V+L
Sbjct: 226  AGGYFVINGSEKVLIAQERMAANHVYVFSKAPPAPVTFLAEIRSAVEKGGKTISTMQVKL 285

Query: 242  VDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILF 301
               +K E         ++ ++  +IPI I+F ALG+  D+E++  I +   D  +L +L 
Sbjct: 286  FSRNK-EKTANNTIRATLPYIRNDIPIVIVFRALGIVPDREVLQHICYDFNDTPMLEMLK 344

Query: 302  ASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGEST---EECMNTYLFPSLHGTK--- 355
              I +A    D       AL ++ +    T     + T   +E +   + P +  ++   
Sbjct: 345  PCIEEAFVIQDR----DVALDFIGRRGTTTGLSRAKRTVYAQEILQKEMLPHVSTSEGSN 400

Query: 356  -QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKA 414
             +KA F GYM+  LL A   RR+ D+RD F  KR++L G L+    ++      + + + 
Sbjct: 401  TKKAYFFGYMIHRLLLAALDRREIDDRDHFGKKRIDLGGPLMANLFRMLFRKVTRDVYRH 460

Query: 415  LQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQ 474
            LQ+ +   R    I+  + +S +TNGL  + +TG W    K  +  +G+   L R     
Sbjct: 461  LQKCVEEHREFH-IQAAVKSSTITNGLRYSLATGNWGDQKKAMQAKAGVSQVLNRFAFAS 519

Query: 475  TLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSIL 534
            TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   V+    
Sbjct: 520  TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMATVTVGTP 579

Query: 535  E-PIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELP 593
              PI E L   G++ L D    +     KVFV+G W+G   D    V  LR  RR+ ++ 
Sbjct: 580  SAPIVEFLEEFGLDSLVD-MQVAHAKATKVFVNGVWMGTHDDPGQLVDTLRDLRRKDDIS 638

Query: 594  TQVEIKRDELQSEVRIFMDAGRILRPLLVV--------------ENMGKIKSLEGKNYTF 639
             +V + RD  + E+RI+ DA R+LRP+ +V              E +G+     G+ + +
Sbjct: 639  HEVSVVRDIRERELRIYTDASRVLRPVFIVNPHDMTLLIKKHHVEMIGQPVPATGEEFRW 698

Query: 640  QALLDHGIIELVGTEEEED---CCTAWGIKY--------------------LLKDIEDKK 676
              L+  G+IE +  EEEE    C T   ++                      LK +    
Sbjct: 699  TQLVQEGVIEYLDAEEEESVLICMTTTDLELSREYKQRNGNINLTSADPTARLKAVHTIA 758

Query: 677  PIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLS 736
            P  +THCE+  +  LG+   I+PF +H+ + R +YQS     QAIG P +N   R D+++
Sbjct: 759  PDTWTHCEIHPAMTLGICASIVPFPDHNQSPRNVYQSAM-GKQAIGVPISNILSRADSMA 817

Query: 737  HQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMN 796
            H L+YPQ+PL  T              HI  R EL  GQN+IVA+  + GYNQEDS++MN
Sbjct: 818  HVLYYPQKPLGTTR----------SMEHIRFR-ELPAGQNSIVAIMCYSGYNQEDSVIMN 866

Query: 797  RASLERGMFRSEHIRSYKAE---VDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGF 853
            ++S++RG  RS + R Y AE   V   +++   +   D      I+ K G  D +D DG 
Sbjct: 867  QSSIDRGFMRSLYYRGYMAEEKKVGVMQLEEFEKPHRDTT----IRMKHGTYDKIDADGL 922

Query: 854  PFIGANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSND 898
               G  +   D++IGK A                +  D SI LK TE G++ +V+L++N 
Sbjct: 923  VAPGTRVSGDDVIIGKTAPLPPDSEELGMRSKLHTKKDASISLKSTENGIIDQVLLTTNS 982

Query: 899  DGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFP 958
            +G  F  V +R  R P  GDKF+S HGQKG +G +  QE+ PF+ +GI PDI+INPHA P
Sbjct: 983  NGNKFVKVRVRNSRVPQTGDKFASRHGQKGTVGIMYRQEDMPFSAEGITPDIIINPHAIP 1042

Query: 959  SRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERL 1018
            SR T G L+E  L K +AAL     SG +  ATPF   +V+A++  L   G+   G E +
Sbjct: 1043 SRMTIGHLVECLLSK-VAAL-----SGQEGDATPFTELTVEAVSSILRGLGYQSRGLEVM 1096

Query: 1019 YDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGE 1078
            Y G TG  +++ +++GPT+YQRL HM +DK+  R  GPV  LTRQPV  R R GG++FGE
Sbjct: 1097 YHGHTGRKMQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRGGGLRFGE 1156

Query: 1079 MERDCLIAHGAAANLHERLFTLSDSYQMHICRKC--KNVANVIQRVVGGGRKVRGPY-CR 1135
            MERDC+IAHG A  L ER+F +SD Y++H+C  C    +AN+           +G Y CR
Sbjct: 1157 MERDCMIAHGIAGFLKERMFDVSDPYRIHVCDLCGLTALANL----------KKGTYECR 1206

Query: 1136 ICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
             C +   I + ++PY AKLL QEL S+ + L+ 
Sbjct: 1207 SCRNRTAISQIHIPYAAKLLMQELQSVNVALRL 1239


>gi|395334467|gb|EJF66843.1| DNA-dependent RNA polymerase II second largest subunit [Dichomitus
            squalens LYAD-421 SS1]
          Length = 1222

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/1243 (34%), Positives = 661/1243 (53%), Gaps = 118/1243 (9%)

Query: 5    DNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGE 64
            D+G+     + D  EE  +  C     SFF++ GLV  Q++S++EF++N +Q+  D   +
Sbjct: 13   DDGYGVDGEVEDEYEEITQEDCWTVITSFFDQKGLVRQQLDSFDEFVQNTMQELVDENSD 72

Query: 65   TIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSR 124
             I++     +       R   ++FGQ+ L +P+    +G     +FP+ ARL+N+TYS+ 
Sbjct: 73   LILDQADQHTGHDGDVTRRYEIKFGQIYLSRPTVTEADGA-VVPVFPQEARLRNLTYSAP 131

Query: 125  MKVKVQFQVYTQKRVTSDKFKTGREQY-IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV 183
            + ++++ ++   +    D+  +G   + +Q++   ++T  + IG++P+M++S  C +  +
Sbjct: 132  LYIEMKKRILIGR---EDQEGSGDMVWEVQRDDDPEDTRKVWIGKVPIMLRSTYCILHEL 188

Query: 184  ------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSENKR-- 234
                  +  +C +D GGYFII G+EKV +AQE++    ++V + +    +++ +E +   
Sbjct: 189  GDKELFDLNECPYDSGGYFIINGSEKVLIAQERMATNHVYVFAKAQPSPISFLAEIRSAV 248

Query: 235  -------NRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLI 287
                   ++  V+L   S+ E   G     ++ ++  +IPIW++F ALGV SD++I+  I
Sbjct: 249  EKGGKTISQFQVKLYHRSQ-ERSLGNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHI 307

Query: 288  DFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES-----TEEC 342
             +  +D  +L +L   I +     D       AL Y+    +GTT            +E 
Sbjct: 308  CYDMQDNQMLEMLKPCIDEGFVIQDR----EIALDYIGN--RGTTTGLNRERRLRYAQEI 361

Query: 343  MNTYLFPSLH----GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLER 398
            +   + P +        +KA F GYM+  LL A   RR  D+RD F  KRL+LAG LL  
Sbjct: 362  LQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRDLDDRDHFGKKRLDLAGPLLAN 421

Query: 399  ELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTE 458
              ++      K + + LQ+ +   +    I   +  + +TNGL  + +TG W    K   
Sbjct: 422  LFRMLFRKLTKDVYRYLQKCVETHKEFN-ISLAVKHNTITNGLKYSLATGNWGDQKKSMS 480

Query: 459  RISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCG 518
              +G+   L R     TL  LRR    +   GK+   R  H +HWG +C   TP+G+ CG
Sbjct: 481  SKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACG 540

Query: 519  LVKNLGVTGLVSTSILE-PIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSL 577
            LVKNL +   +S   L  P+ E L   G+E L ++A  S     KVFV+G W+GV +D +
Sbjct: 541  LVKNLSLMSCISVGTLSAPVIEFLEEWGLESLEENAHASTPCT-KVFVNGVWMGVHRDPV 599

Query: 578  SFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------------ 625
              VS LR+ RR+ ++  +V + RD  + E+R++ DAGR+ RPL +VEN            
Sbjct: 600  KLVSTLRKLRRKDDINCEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLIQKKHIES 659

Query: 626  MGKIKSLEGKNYTFQALLDHGIIELVGTEEEED---CCT----------AWGIKYLLKDI 672
            + + K     NY + +LL  G+IEL+  EEEE    C T          A GI     + 
Sbjct: 660  LVRAKDDPTFNYNWDSLLKDGVIELLDAEEEETVMICMTPEDLENSRLQAAGIDPHADEE 719

Query: 673  ED-----KKPIK---FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFP 724
            ED     K P     +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G  
Sbjct: 720  EDPSARLKAPTSAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGIF 778

Query: 725  TTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVH 784
             TN  IR+DT+++ L+YPQ+PL  T   +            L   EL  GQNAIVA+  +
Sbjct: 779  LTNFLIRMDTMANILYYPQKPLATTRSME-----------YLRFRELPAGQNAIVAILCY 827

Query: 785  LGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGR 844
             GYNQEDS++MN++S++RG+FRS + RSY  +++ K    +    +       ++ K G 
Sbjct: 828  SGYNQEDSVIMNQSSIDRGLFRSIYYRSY-MDLEKKSGVQQLEEFEKPTRDTTLRMKHGT 886

Query: 845  VDSLDDDGFPFIGANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMV 889
             D L+DDG    G N+   DI+IGK A                +  D S  LK TE+G+V
Sbjct: 887  YDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTKRDVSTPLKSTEQGIV 946

Query: 890  QKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPD 949
             +V++++N +G+ F  + +R  R P +GDKF+S HGQKG +G    QE+ PFT +GI PD
Sbjct: 947  DQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPD 1006

Query: 950  IVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAG 1009
            I+INPHA PSR T G L+E  L K    +G       +  ATPF   +V+++++ L + G
Sbjct: 1007 IIINPHAIPSRMTIGHLVECLLSKLATLIGN------EGDATPFTDLTVESVSQYLRQKG 1060

Query: 1010 FSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRK 1069
            +   G E +Y G TG  +++ +++GPT+YQRL HM +DK+  R  GPV  LTRQPV  R 
Sbjct: 1061 YQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRS 1120

Query: 1070 RFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKC--KNVANVIQRVVGGGR 1127
            R GG++FGEMERDC+I+HG AA L ERLF  SD+Y++H+C  C    +AN+ ++      
Sbjct: 1121 RDGGLRFGEMERDCMISHGVAAFLKERLFEASDAYRLHVCDICGLTAIANLKKQTFE--- 1177

Query: 1128 KVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
                  CR C +     +  +PY AKLL QEL SM I  +  T
Sbjct: 1178 ------CRACKNKTACSQIYIPYAAKLLFQELQSMNIAARLYT 1214


>gi|16486|emb|CAA79528.1| RNA polymerase II second largest subunit [Arabidopsis thaliana]
          Length = 1188

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/1217 (35%), Positives = 642/1217 (52%), Gaps = 114/1217 (9%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP--GYDP 73
            D  EE  +        ++F E GLV  Q++S++EFI+N +Q+  D   +  + P   ++P
Sbjct: 16   DDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 75

Query: 74   SKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQV 133
              + +       + FGQ+ L KP     + G+   +FP+ ARL+N+TYS+ + V V    
Sbjct: 76   GHQSDFAETIYKISFGQIYLSKP-MMTESDGETATLFPKAARLRNLTYSAPLYVDVT--- 131

Query: 134  YTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM------KGVEKGD 187
               KRV     K G +   ++   + + T + IG++P+M++S  C +         E G+
Sbjct: 132  ---KRV----IKKGHDG--EEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGE 182

Query: 188  CDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWT--VAYKSENKRNRLIVR 240
            C +D GGYFII G+EKV +AQE++    ++V      N   +   V   +EN+       
Sbjct: 183  CPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAENQNRPPSTM 242

Query: 241  LVDMSKFEDIKGGEK----VLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
             V M      KGG        ++ ++ TEIPI I+F ALG  +DK+I+  I +   D  +
Sbjct: 243  FVRMLARASAKGGSSGQYIRCTLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQM 302

Query: 297  LNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGEST---------EECMNTYL 347
            + +L  S+ +A    ++      AL Y+ K  +G T    +           ++ M  Y+
Sbjct: 303  MELLRPSLEEAFVIQNQL----VALDYIGK--RGATVGVTKEKRIKYARDILQKEMLLYV 356

Query: 348  FPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHA 407
                H   +KA + GY++  LL    GRR  D+RD + NKRL+LAG LL    ++     
Sbjct: 357  GIGEHCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKL 416

Query: 408  RKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANL 467
             + +   +Q+ +   + V  +++ + A  +T+GL  + +TG W        R +G+   L
Sbjct: 417  TRDVRSYVQKCVDNGKEVN-LQFAIKAKTITSGLKYSLATGNWGQANAAGTR-AGVSQVL 474

Query: 468  GRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTG 527
             R     TL  LRR    +   GK+   R  H S WG +C   TP+G+ CGLVKNL +  
Sbjct: 475  NRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMV 534

Query: 528  LVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRK 586
             ++  S   PI E L   G E   + +   +    K+FV+G W+GV +D    V  LRR 
Sbjct: 535  YITVGSAAYPILEFLEEWGTENFEEISPSVIPQATKIFVNGMWVGVHRDPDMLVKTLRRL 594

Query: 587  RRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMG------KIKSLEGKNYT-- 638
            RRR ++ T+V + RD    E+RI+ D GR  RPL +V+N         I +L+ +     
Sbjct: 595  RRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDNQKLLIKKRDIYALQQRESAEE 654

Query: 639  --FQALLDHGIIELVGTEEEEDCCTAWGIKYLLKD---IEDKKPIKFTHCELDMSFLLGL 693
              +  L+  G IE + TEEEE    +  I  L++     E+     +THCE+  S +LG+
Sbjct: 655  DGWHHLVAKGFIEYIDTEEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSLILGV 714

Query: 694  SCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISD 753
               IIPF +H+ + R  YQS     QA+G   TN   R+DTL++ L+YPQ+PL  T   +
Sbjct: 715  CASIIPFPDHNQSPRNTYQS-AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME 773

Query: 754  CLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSY 813
             L      H   LP      G NAIVA++ + GYNQEDS++MN++S++RG FRS   RSY
Sbjct: 774  HL------HFRQLP-----AGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 822

Query: 814  KAEVDNKEMQVKRRSSDDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDIVI 867
            + E       VK        +FG+      +  + G  D LDDDG    G  +   D++I
Sbjct: 823  RDEEKKMGTLVKE-------DFGRPDRGSTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 875

Query: 868  GKYAD-------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSP 914
            GK                +  DHSI L+H+E GMV +V+L++N DG  F  V +R VR P
Sbjct: 876  GKTTPISQDEAQGQSSRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 935

Query: 915  CLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKG 974
             +GDKFSS HGQKG +G   +QE+ P+TI+G+ PDI++NPHA PSR T GQL+E  +GK 
Sbjct: 936  QIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKV 995

Query: 975  IAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIG 1034
             A +GK      +  ATPF   +VD I++ LH+ G+   G ER+Y+G TG  + ++IF+G
Sbjct: 996  AAHMGK------EGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGRPLTAMIFLG 1049

Query: 1035 PTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLH 1094
            PT+YQRL HM +DK+  R  GPV  LTRQP   R R GG++FGEMERDC+IAHGAA  L 
Sbjct: 1050 PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLK 1109

Query: 1095 ERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKL 1154
            ERLF  SD+Y++H+C  C  +A           K     CR C +  DIV+  +PY  KL
Sbjct: 1110 ERLFDQSDAYRVHVCEVCGLIAI-------ANLKKNSFECRGCKNKTDIVQVYIPYACKL 1162

Query: 1155 LCQELFSMGITLKFDTE 1171
            L QEL SM I  +  T+
Sbjct: 1163 LFQELMSMAIAPRMLTK 1179


>gi|68300814|gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrhinum majus]
          Length = 1200

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1201 (35%), Positives = 643/1201 (53%), Gaps = 114/1201 (9%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP--GYDPSKKGEGEWRYASMRFG 89
            ++F E GLV  Q++S++EFI+N +Q+  D   +  + P   ++P ++ +       + FG
Sbjct: 40   AYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQPDFAETIYKISFG 99

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
            Q+ L KP     + G+   +FP+ ARL+N+TYS+ + V V       KRV     K G +
Sbjct: 100  QIYLSKP-MMTESDGETATLFPKAARLRNLTYSAPLYVDVS------KRV----IKKGHD 148

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
               ++   + + T + IG++P+M++S  C +         E G+C  D GGYFII G+EK
Sbjct: 149  G--EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEK 206

Query: 204  VFVAQEQICLKRLWV-----SNSMGWTVAYKS-ENKRNR----LIVRLVDMSKFEDIKGG 253
            V +AQE++    ++V      N   +    +S    +NR    + VR++  +  +    G
Sbjct: 207  VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAEAQNRPPSTMFVRMLSRTSAKGGSSG 266

Query: 254  EKV-LSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD 312
            + +  ++ ++ TEIPI I+F ALG  +DK+I+  I F   D  ++ +L  S+ +A     
Sbjct: 267  QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICFNSSDTQMMELLRPSLEEAF---- 322

Query: 313  EFRKGRNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSL----HGTKQKARFLGY 363
              +  + AL Y+ K  +G+T    +       +E +   + P +    +   +KA + GY
Sbjct: 323  VIQNQQVALDYIGK--RGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGY 380

Query: 364  MVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDR 423
            ++  LL    GRR  D+RD + NKRL+LAG LL    ++      + +   +Q+ +   +
Sbjct: 381  IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGK 440

Query: 424  TVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTR 483
             V  +++ + A  +T+GL  + +TG W        R +G+   L R     TL  LRR  
Sbjct: 441  DVN-LQFXIKAKTITSGLKYSLATGNWGQANAAGTR-AGVSQVLNRLTYASTLSHLRRLB 498

Query: 484  QQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLF 542
              +   GK+   R  H S WG +C   TP+G+ CGLVKNL +   ++  S   PI E L 
Sbjct: 499  SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLE 558

Query: 543  NSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
              G E   + +   +    K+FV+G W+G+ ++    VS LRR RRR ++ T+V + RD 
Sbjct: 559  EWGTENFEEISPAVIPQATKIFVNGLWVGIHRNPDMLVSTLRRLRRRVDVNTEVGVVRDI 618

Query: 603  LQSEVRIFMDAGRILRPLLVVENM------GKIKSLEGKNYT----FQALLDHGIIELVG 652
               E+RI+ D GR  RPL +VE          +++L+ +       +  L+  G IE + 
Sbjct: 619  RLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDVQALQQRESPDDGGWHELVAKGFIEYID 678

Query: 653  TEEEEDCCTAWGIKYLLK---DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRV 709
            TEEEE    +  I  LL    +  +     +THCE+  S +LG+   IIPF +H+ + R 
Sbjct: 679  TEEEETTMISMTINDLLSAKVNPTEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 738

Query: 710  LYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRP 769
             YQS     QA+G   TN   R+DTL++ L+YPQ+PL  T   + L      H   LP  
Sbjct: 739  TYQS-AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL------HFRQLP-- 789

Query: 770  ELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSS 829
                G NAIVA+  + GYNQEDS++MN++S++RG FRS   RSY+ E       VK    
Sbjct: 790  ---AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE--- 843

Query: 830  DDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD----------- 872
                +FG+      +  + G  D LDDDG    G      D++IGK              
Sbjct: 844  ----DFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRCSGEDVIIGKTTPISPDDAQGQAA 899

Query: 873  --SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVL 930
              +  DHS  L+H+E GMV +V+L++N DG  F  V +R VR P +GDKFSS HGQKG +
Sbjct: 900  RYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 959

Query: 931  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYA 990
            G   +QE+ P+T++GI PDI++NPHA PSR T GQL+E  +GK  A +GK      +  A
Sbjct: 960  GMTYTQEDMPWTVEGISPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK------EGDA 1013

Query: 991  TPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVK 1050
            TPF   +VD I++ LH+ G+   G E +Y+G TG  + S+IF+GPT+YQRL HM +DK+ 
Sbjct: 1014 TPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSSMIFLGPTYYQRLKHMVDDKIH 1073

Query: 1051 FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICR 1110
             R  GPV  LTRQP   R R GG++FGEMERDC+IAHGAA  L ERLF  SD+Y++H+C 
Sbjct: 1074 SRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCE 1133

Query: 1111 KCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
            +C  +A           K     CR C +  DIV+ ++PY  KLL QEL SM I  +  T
Sbjct: 1134 QCGLIAI-------ANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLT 1186

Query: 1171 E 1171
            +
Sbjct: 1187 K 1187


>gi|255556051|ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
 gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
          Length = 1194

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/1201 (35%), Positives = 645/1201 (53%), Gaps = 114/1201 (9%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP--GYDPSKKGEGEWRYASMRFG 89
            ++F E GLV  Q++S++EFI+N +Q+  D   +  + P   ++P  + +       + FG
Sbjct: 34   AYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETIYKISFG 93

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
            Q+ L KP     + G+   +FP+ ARL+N+TYS+ + V V       KRV     K G +
Sbjct: 94   QIYLSKP-MMTESDGETATLFPKAARLRNLTYSAPLYVDVT------KRV----IKKGHD 142

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
               ++   + + T + IG++P+M++S  C +         E G+C +D GGYFII G+EK
Sbjct: 143  G--EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 200

Query: 204  VFVAQEQICLKRLWV-----SNSMGWTVAYKS-ENKRNR----LIVRLVDMSKFEDIKGG 253
            V +AQE++    ++V      N   +    +S    +NR    + VR++  +  +    G
Sbjct: 201  VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSG 260

Query: 254  EKV-LSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD 312
            + +  ++ ++ TEIPI I+F ALG  +DK+I+  I +   D  ++ +L  S+ +A     
Sbjct: 261  QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAF---- 316

Query: 313  EFRKGRNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSL----HGTKQKARFLGY 363
              +  + AL Y+ K  +G T    +       +E +   + P +    +   +KA + GY
Sbjct: 317  VIQNQQVALDYIGK--RGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGY 374

Query: 364  MVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDR 423
            ++  LL    GRR  D+RD + NKRL+LAG LL    ++      + +   +Q+ +   +
Sbjct: 375  IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGK 434

Query: 424  TVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTR 483
             V  +++ + A  +T+GL  + +TG W        R +G+   L R     TL  LRR  
Sbjct: 435  DVN-LQFAIKAKTITSGLKYSLATGNWGQANAAGTR-AGVSQVLNRLTYASTLSHLRRLN 492

Query: 484  QQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLF 542
              +   GK+   R  H S WG +C   TP+G+ CGLVKNL +   ++  S   PI E L 
Sbjct: 493  SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLE 552

Query: 543  NSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
              G E   + +   +    K+FV+G W+G+ +D    V  LRR RRR ++ T+V + RD 
Sbjct: 553  EWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDI 612

Query: 603  LQSEVRIFMDAGRILRPLLVVENM------GKIKSLEGKNYT----FQALLDHGIIELVG 652
               E+RI+ D GR  RPL +VE          I +L+ +  +    +  L+  G IE + 
Sbjct: 613  RLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRESSEEGGWHDLVAKGFIEYID 672

Query: 653  TEEEEDCCTAWGIKYLLK---DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRV 709
            TEEEE    +  I  L++   + E+     +THCE+  S +LG+   IIPF +H+ + R 
Sbjct: 673  TEEEETTMISMTIHDLVQARINPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 732

Query: 710  LYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRP 769
             YQS     QA+G   TN   R+DTL++ L+YPQ+PL  T   + L      H   LP  
Sbjct: 733  TYQS-AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL------HFRQLP-- 783

Query: 770  ELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSS 829
                G NAIVA+  + GYNQEDS++MN++S++RG FRS   RSY+ E       VK    
Sbjct: 784  ---AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE--- 837

Query: 830  DDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD----------- 872
                +FG+      +  + G  D LDDDG    G  +   D++IGK              
Sbjct: 838  ----DFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEEAQGQSA 893

Query: 873  --SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVL 930
              +  DHSI L+H+E G+V +V+L++N DG  F  V +R VR P +GDKFSS HGQKG +
Sbjct: 894  RYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 953

Query: 931  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYA 990
            G   +QE+ P+T++GI PDI++NPHA PSR T GQL+E  +GK  A +GK      +  A
Sbjct: 954  GMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK------EGDA 1007

Query: 991  TPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVK 1050
            TPF   +VD I++ LH+ G+   G E +Y+G TG  + ++IF+GPT+YQRL HM +DK+ 
Sbjct: 1008 TPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIH 1067

Query: 1051 FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICR 1110
             R  GPV  LTRQP   R R GG++FGEMERDC+IAHGAA  L ERLF  SD+Y++H+C 
Sbjct: 1068 SRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCE 1127

Query: 1111 KCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
            +C  +A           K     CR C +  DIV+ ++PY  KLL QEL +M I  +  T
Sbjct: 1128 RCGLIAI-------ANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1180

Query: 1171 E 1171
            +
Sbjct: 1181 K 1181


>gi|388582011|gb|EIM22317.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Wallemia sebi CBS 633.66]
          Length = 1198

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1225 (34%), Positives = 649/1225 (52%), Gaps = 126/1225 (10%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYAS 85
            C     SFF+E GLV  QI+S++EF++N +Q+  +   +  ++     ++      R   
Sbjct: 7    CWTVISSFFDEKGLVRQQIDSFDEFVQNTMQEIVEENQKLTLDQFNQYTQHKNDTTRRYE 66

Query: 86   MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
            ++FGQ+ L +P+    +G     MFP  ARL+N+TYS+ + + ++ +V  Q  V  D+  
Sbjct: 67   IQFGQIYLSRPTMTEADGS-VSPMFPHEARLRNLTYSAPIYIDMKKRVLVQ--VEDDE-- 121

Query: 146  TGREQYIQK-EVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFII 198
            TG   ++ + +   DETT + IG++P+M+KS  C +  V      E  +C FD GGYFII
Sbjct: 122  TGDLIWVPEFDEEHDETTKVWIGKVPIMLKSTFCNLNNVDSARLSELNECPFDQGGYFII 181

Query: 199  KGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGG 253
             G+EKV +AQE++    +++      + + +    +S  ++    V  + +  F   +G 
Sbjct: 182  NGSEKVLIAQERLAANHVYIFAKAEPSPVSYQAEIRSAMEKGGKTVSSMQIKMFRRPQGN 241

Query: 254  EKV----LSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA-- 307
             +      ++ ++  EIPI I+F ALG+  D+EI+  I F  +D  +L++L   I +A  
Sbjct: 242  AQADTMRATIPYIKNEIPIIIVFRALGIVPDREILEHICFDFDDSQMLDLLKPCIEEAFV 301

Query: 308  ---DNKCDEF--RKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTK----QKA 358
                N   +F  R+G       DK I+          ++ +   + P +   +    +KA
Sbjct: 302  VQDQNVALDFIGRRGTTTGLSKDKRIR--------YAKDILQKEMLPHVATNEGSETKKA 353

Query: 359  RFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRD 418
             F GYM+  L+ A   RR+ D+RD F  KRL+L G LL    ++      K + + +Q+ 
Sbjct: 354  YFFGYMIHRLMLARLERRELDDRDHFGKKRLDLGGPLLASLFRMLFRKLTKDVYRYMQKC 413

Query: 419  LYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVD 478
            +   +    +   + A+ +TNGL  + +TG W    K  +  +G+   L R     TL  
Sbjct: 414  VETHKEFN-LNQAVKANTITNGLKYSLATGNWGDQKKFMQARAGVSQVLNRYTFASTLSH 472

Query: 479  LRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPI 537
            LRR    +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   VST S   PI
Sbjct: 473  LRRCNTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMANVSTGSSSAPI 532

Query: 538  FEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVE 597
             + L   GME+L +    S   + KVFV+G WIGV +D  + V  LR+ RR  ++  +V 
Sbjct: 533  QDFLQEWGMEELEEFNPRS--NQVKVFVNGVWIGVHRDPTNLVKTLRKLRREGDIQHEVS 590

Query: 598  IKRDELQSEVRIFMDAGRILRPLLVVE--------NMGKIKSLEG----------KNYTF 639
            + RD  + E+++F DAGR+ RPL +V+        N   I  +E           + Y +
Sbjct: 591  VVRDVREKEIKVFTDAGRVCRPLFLVDEETQQLEINKSHIAKIEAHTNGEDEDPDQPYNW 650

Query: 640  QALLDHGIIELVGTEEEED---CCTAWGIKY----LLKDIEDKKPI------------KF 680
              L+  G++EL+  EEEE    C T   +++     +   E+  P              +
Sbjct: 651  AKLMSDGVMELLDAEEEETVMICMTPEELEHSRQGFIPQDEEFDPAARIKSASTLDTHTW 710

Query: 681  THCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLF 740
            THCE+  S +LG+   IIPF +H+ + R  YQ+     QA+G   TN   R+DTLS+ L+
Sbjct: 711  THCEIHPSMILGICASIIPFPDHNQSPRNTYQA-AMGKQAMGVHLTNFQQRMDTLSNILY 769

Query: 741  YPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASL 800
            YPQ+PL  T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++++
Sbjct: 770  YPQKPLATTRSME-----------YLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSAI 818

Query: 801  ERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANL 860
            +RG+FRS   RSY  + + K   +     +       ++ K G  D +++DG    G  +
Sbjct: 819  DRGLFRSIFYRSY-MDTEKKVGTMLLEEFEKPTRETCLRMKHGTYDKIENDGLIAPGTAV 877

Query: 861  QSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSV 905
               DI+IGK A                +  D S  LK TE G+V +V++++N DG  FS 
Sbjct: 878  TGDDIIIGKTAPIPPDSEELGQRTKLHTKRDVSTPLKSTENGIVDQVLVTTNADGLKFSK 937

Query: 906  VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 965
            V +R  R P +GDKF+S HGQKG +G     E+ PFT  GI PD++INPHA PSR T G 
Sbjct: 938  VRMRSTRIPQIGDKFASRHGQKGTIGITYRNEDMPFTSDGITPDLIINPHAIPSRMTIGH 997

Query: 966  LLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGE 1025
            L+E  L K +A L      G +  ATPF   +V++I+  LH  G+ K G E +Y+G TG 
Sbjct: 998  LVECLLSK-VATL-----QGSEGDATPFTEVTVESISSILHEKGYQKRGLEVMYNGHTGR 1051

Query: 1026 MVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLI 1085
             +++ ++IGPT+YQRL HM +DK+  R  GPV  LTRQPV  R R GG++FGEMERDC+I
Sbjct: 1052 KLQAQVYIGPTYYQRLKHMVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERDCMI 1111

Query: 1086 AHGAAANLHERLFTLSDSYQMHICRKC--KNVANVIQRVVGGGRKVRGPYCRICDSGDDI 1143
            AHG AA L ERLF  SD+Y++H+C  C    +AN+ ++            CR C +  DI
Sbjct: 1112 AHGVAAFLKERLFDASDAYRLHVCDLCGMTAIANLKKQTFE---------CRACRNKTDI 1162

Query: 1144 VKANVPYGAKLLCQELFSMGITLKF 1168
             + +VPY AKLL QEL SMGI+ + 
Sbjct: 1163 SQIHVPYAAKLLFQELQSMGISPRL 1187


>gi|68300812|gb|AAY89347.1| RNA polymerase II second largest subunit [Petunia x hybrida]
          Length = 1195

 Score =  666 bits (1718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1201 (35%), Positives = 643/1201 (53%), Gaps = 114/1201 (9%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP--GYDPSKKGEGEWRYASMRFG 89
            ++F E GLV  Q++S++EFI+N +Q+  D   +  + P   ++P  + +       + FG
Sbjct: 35   AYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETIYKINFG 94

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
            Q+ L KP     + G+   +FP+ ARL+N+TYS+ + V V       KRV     K G +
Sbjct: 95   QIYLSKP-MMTESDGETATLFPKAARLRNLTYSAPLYVDVT------KRV----IKKGHD 143

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
               ++   + + T + IG++P+M++S  C +         E G+C  D GGYFII G+EK
Sbjct: 144  G--EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEK 201

Query: 204  VFVAQEQICLKRLWV-----SNSMGWTVAYKS-ENKRNR----LIVRLVDMSKFEDIKGG 253
            V +AQE++    ++V      N   +    +S    +NR    + VR++  +  +    G
Sbjct: 202  VLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSG 261

Query: 254  EKV-LSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD 312
            + +  ++ ++ TEIPI I+F ALG  +DK+I+  I +   D  ++ +L  S+ +A     
Sbjct: 262  QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPSLEEAF---- 317

Query: 313  EFRKGRNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSL----HGTKQKARFLGY 363
              +  + AL Y+ K  +G T    +       +E +   + P +    +   +KA + GY
Sbjct: 318  VIQNQQVALDYIGK--RGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGY 375

Query: 364  MVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDR 423
            ++  LL    GRR  D+RD + NKRL+LAG LL    ++      + +   +Q+ +   +
Sbjct: 376  IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGK 435

Query: 424  TVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTR 483
             V  +++ + A  +T+GL  + +TG W        R +G+   L R     TL  LRR  
Sbjct: 436  DVN-LQFAIKAKTITSGLKYSLATGNWGQANAAGTR-AGVSQVLNRLTYASTLSHLRRLN 493

Query: 484  QQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLF 542
              +   GK+   R  H S WG +C   TP+G+ CGLVKNL +   ++  S   PI E L 
Sbjct: 494  SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLE 553

Query: 543  NSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
              G E   + +   +    K+FVBG W+G+ +D    V  LRR RRR ++ T+V + RD 
Sbjct: 554  EXGTENFEEISPAVIPQATKIFVBGTWMGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDI 613

Query: 603  LQSEVRIFMDAGRILRPLLVVENMG------KIKSLEGKNYT----FQALLDHGIIELVG 652
               E+RI+ D GR  RPL +VE          I+ L+ +       +  L+  G IE + 
Sbjct: 614  RLKELRIYTDYGRCSRPLFIVEKQKLLIKKKDIQQLQQRETPEEGGWHDLVAKGYIEYID 673

Query: 653  TEEEEDCCTAWGIKYLLK---DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRV 709
            TEEEE    +  I  L++   + ED     +THCE+  S +LG+   IIPF +H+ + R 
Sbjct: 674  TEEEETTMISMTINDLVQASINPEDAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRN 733

Query: 710  LYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRP 769
             YQS     QA+G   TN   R+DTL++ L+YPQ+PL  T   + L      H   LP  
Sbjct: 734  TYQS-AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL------HFRQLP-- 784

Query: 770  ELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSS 829
                G NAIVA++ + GYNQEDS++MN++S++RG FRS   RSY+ E       VK    
Sbjct: 785  ---AGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE--- 838

Query: 830  DDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD----------- 872
                +FG+      +  + G  D LDDDG    G  +   D++IGK              
Sbjct: 839  ----DFGRPDRASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQAS 894

Query: 873  --SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVL 930
              +  DHS  L+H+E GMV +V+L++N DG  F  V +R VR P +GDKFSS HGQKG +
Sbjct: 895  RYTRKDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 954

Query: 931  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYA 990
            G   +QE+ P+TI+GI PDI++NPHA PSR T GQL+E  +GK  A +GK      +  A
Sbjct: 955  GMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK------EGDA 1008

Query: 991  TPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVK 1050
            TPF   +VD I++ LH+ G+   G E +Y+G TG  + ++IF+GPT+YQRL HM +DK+ 
Sbjct: 1009 TPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLPAMIFLGPTYYQRLKHMVDDKIH 1068

Query: 1051 FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICR 1110
             R  GPV  LTRQP   R R GG++FGEMERDC+IAHGAA  L ERLF  SD+Y++H+C 
Sbjct: 1069 SRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCE 1128

Query: 1111 KCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
            +C  +A           K     CR C +  DIV+ ++PY  KLL QEL +M I  +  T
Sbjct: 1129 RCGLIAI-------ANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 1181

Query: 1171 E 1171
            +
Sbjct: 1182 K 1182


>gi|297799890|ref|XP_002867829.1| hypothetical protein ARALYDRAFT_492703 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297313665|gb|EFH44088.1| hypothetical protein ARALYDRAFT_492703 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1188

 Score =  666 bits (1718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1217 (35%), Positives = 643/1217 (52%), Gaps = 114/1217 (9%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP--GYDP 73
            D  EE  +        ++F E GLV  Q++S++EFI+N +Q+  D   +  + P   ++P
Sbjct: 16   DDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 75

Query: 74   SKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQV 133
              + +       + FGQ+ L KP     + G+   +FP+ ARL+N+TYS+ + V V    
Sbjct: 76   GHQSDFAETIYKISFGQIYLSKP-MMTESDGETATLFPKAARLRNLTYSAPLYVDVT--- 131

Query: 134  YTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM------KGVEKGD 187
               KRV     K G +   ++   + + T + IG++P+M++S  C +         E G+
Sbjct: 132  ---KRV----IKKGHDG--EEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGE 182

Query: 188  CDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWT--VAYKSENKRNRLIVR 240
            C +D GGYFII G+EKV +AQE++    ++V      N   +   V   +EN+       
Sbjct: 183  CPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAENQNRPPSTM 242

Query: 241  LVDMSKFEDIKGGEK----VLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
             V M      KGG        ++ ++ TEIPI I+F ALG  +DK+I+  I +   D  +
Sbjct: 243  FVRMLARASAKGGSSGQYIRCTLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQM 302

Query: 297  LNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSL 351
            + +L  S+ +A    ++      AL Y+ K  +G T    +       ++ +   + P +
Sbjct: 303  MELLRPSLEEAFVIQNQL----VALDYIGK--RGATVGVTKEKRIKYAKDILQKEMLPHV 356

Query: 352  ----HGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHA 407
                +   +KA + GY++  LL    GRR  D+RD + NKRL+LAG LL    ++     
Sbjct: 357  GIGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKL 416

Query: 408  RKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANL 467
             + +   +Q+ +   + V  +++ + A  +T+GL  + +TG W        R +G+   L
Sbjct: 417  TRDVRSYVQKCVDNGKEVN-LQFAIKAKTITSGLKYSLATGNWGQANAAGTR-AGVSQVL 474

Query: 468  GRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTG 527
             R     TL  LRR    +   GK+   R  H S WG +C   TP+G+ CGLVKNL +  
Sbjct: 475  NRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMV 534

Query: 528  LVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRK 586
             ++  S   PI E L   G E   + +   +    K+FV+G W+GV +D    V  LRR 
Sbjct: 535  YITVGSAAYPILEFLEEWGTENFEEISPSVIPQATKIFVNGMWVGVHRDPDMLVKTLRRL 594

Query: 587  RRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMG------KIKSLEGKNYT-- 638
            RRR ++ T+V + RD    E+RI+ D GR  RPL +V+N         I +L+ +     
Sbjct: 595  RRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDNQRLLIKKRDIYALQQRESAEE 654

Query: 639  --FQALLDHGIIELVGTEEEEDCCTAWGIKYLLKD---IEDKKPIKFTHCELDMSFLLGL 693
              +  L+  G IE + TEEEE    +  I  L++     E+     +THCE+  S +LG+
Sbjct: 655  DGWHHLVAKGFIEYIDTEEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSLILGV 714

Query: 694  SCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISD 753
               IIPF +H+ + R  YQS     QA+G   TN   R+DTL++ L+YPQ+PL  T   +
Sbjct: 715  CASIIPFPDHNQSPRNTYQS-AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME 773

Query: 754  CLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSY 813
             L      H   LP      G NAIVA++ + GYNQEDS++MN++S++RG FRS   RSY
Sbjct: 774  HL------HFRQLP-----AGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 822

Query: 814  KAEVDNKEMQVKRRSSDDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDIVI 867
            + E       VK        +FG+      +  + G  D LDDDG    G  +   D++I
Sbjct: 823  RDEEKKMGTLVKE-------DFGRPDRGSTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 875

Query: 868  GKYAD-------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSP 914
            GK                +  DHSI L+H+E GMV +V+L++N DG  F  V +R VR P
Sbjct: 876  GKTTPISQDEAQGQSSRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 935

Query: 915  CLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKG 974
             +GDKFSS HGQKG +G   +QE+ P+TI+G+ PDI++NPHA PSR T GQL+E  +GK 
Sbjct: 936  QIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKV 995

Query: 975  IAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIG 1034
             A +GK      +  ATPF   +VD I++ LH+ G+   G ER+Y+G TG  + ++IF+G
Sbjct: 996  AAHMGK------EGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGRPLTAMIFLG 1049

Query: 1035 PTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLH 1094
            PT+YQRL HM +DK+  R  GPV  LTRQP   R R GG++FGEMERDC+IAHGAA  L 
Sbjct: 1050 PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLK 1109

Query: 1095 ERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKL 1154
            ERLF  SD+Y++H+C  C  +A           K     CR C +  DIV+  +PY  KL
Sbjct: 1110 ERLFDQSDAYRVHVCEVCGLIAI-------ANLKKNSFECRGCKNKTDIVQVYIPYACKL 1162

Query: 1155 LCQELFSMGITLKFDTE 1171
            L QEL SM I  +  T+
Sbjct: 1163 LFQELMSMAIAPRMLTK 1179


>gi|16488|emb|CAA79527.1| RNA polymerase II second largest subunit [Arabidopsis thaliana]
          Length = 1188

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1217 (35%), Positives = 641/1217 (52%), Gaps = 114/1217 (9%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP--GYDP 73
            D  EE  +        ++F E GLV  Q++S++EFI+N +Q+  D   +  + P   ++P
Sbjct: 16   DDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 75

Query: 74   SKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQV 133
              + +       + FGQ+ L KP     + G+   +FP+ ARL+N+TYS+ + V V    
Sbjct: 76   GHQSDFAETIYKISFGQIYLSKP-MMTESDGETATLFPKAARLRNLTYSAPLYVDVT--- 131

Query: 134  YTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM------KGVEKGD 187
               KRV     K G +   ++   + + T + IG++P+M++S  C +         E G+
Sbjct: 132  ---KRV----IKKGHDG--EEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGE 182

Query: 188  CDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWT--VAYKSENKRNRLIVR 240
            C +D GGYFII G+EKV +AQE++    ++V      N   +   V   +EN+       
Sbjct: 183  CPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAENQNRPPSTM 242

Query: 241  LVDMSKFEDIKGGEK----VLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
             V M      KGG        ++ ++ TEIPI I+F ALG  +DK+I+  I +   D  +
Sbjct: 243  FVRMLARASAKGGSSGQYIRCTLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQM 302

Query: 297  LNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGEST---------EECMNTYL 347
            + +L  S+ +A    ++      AL Y+ K  +G T    +           ++ M  Y+
Sbjct: 303  MELLRPSLEEAFVIQNQLV----ALDYIGK--RGATVGVTKEKRIKYARDILQKEMLLYV 356

Query: 348  FPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHA 407
                H   +KA + GY++  LL    GRR  D+RD + NKRL+LAG LL    ++     
Sbjct: 357  GIGEHCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKL 416

Query: 408  RKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANL 467
             + +   +Q+ +   + V  +++ + A  +T+GL  + +TG W        R +G+   L
Sbjct: 417  TRDVRSYVQKCVDNGKEVN-LQFAIKAKTITSGLKYSLATGNWGQANAAGTR-AGVSQVL 474

Query: 468  GRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTG 527
             R     TL  LRR    +   GK+   R  H S WG +C   TP+G+ CGLVKNL +  
Sbjct: 475  NRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMV 534

Query: 528  LVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRK 586
             ++  S   PI E L   G E   + +   +    K+FV+G W+GV +D    V  LRR 
Sbjct: 535  YITVGSAAYPILEFLEEWGTENFEEISPSVIPQATKIFVNGMWVGVHRDPDMLVKTLRRL 594

Query: 587  RRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMG------KIKSLEGKNYT-- 638
            RRR ++ T+V + RD    E+RI+ D GR  RPL +V+N         I +L+ +     
Sbjct: 595  RRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDNQKLLIKKRDIYALQQRESAEE 654

Query: 639  --FQALLDHGIIELVGTEEEEDCCTAWGIKYLLKD---IEDKKPIKFTHCELDMSFLLGL 693
              +  L+  G IE + TEEEE    +  I  L++     E+     +THCE+  S +LG+
Sbjct: 655  DGWHHLVAKGFIEYIDTEEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSLILGV 714

Query: 694  SCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISD 753
               IIPF +H+ + R  YQS     QA+G   TN   R+DTL++ L+YPQ+PL  T   +
Sbjct: 715  CASIIPFPDHNQSPRNTYQS-AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAME 773

Query: 754  CLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSY 813
             L      H   LP      G NA VA++ + GYNQEDS++MN++S++RG FRS   RSY
Sbjct: 774  HL------HFRQLP-----AGINANVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 822

Query: 814  KAEVDNKEMQVKRRSSDDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDIVI 867
            + E       VK        +FG+      +  + G  D LDDDG    G  +   D++I
Sbjct: 823  RDEEKKMGTLVKE-------DFGRPDRGSTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 875

Query: 868  GKYAD-------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSP 914
            GK                +  DHSI L+H+E GMV +V+L++N DG  F  V +R VR P
Sbjct: 876  GKTTPISQDEAQGQSSRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIP 935

Query: 915  CLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKG 974
             +GDKFSS HGQKG +G   +QE+ P+TI+G+ PDI++NPHA PSR T GQL+E  +GK 
Sbjct: 936  QIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMGKV 995

Query: 975  IAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIG 1034
             A +GK      +  ATPF   +VD I++ LH+ G+   G ER+Y+G TG  + ++IF+G
Sbjct: 996  AAHMGK------EGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGRPLTAMIFLG 1049

Query: 1035 PTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLH 1094
            PT+YQRL HM +DK+  R  GPV  LTRQP   R R GG++FGEMERDC+IAHGAA  L 
Sbjct: 1050 PTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLK 1109

Query: 1095 ERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKL 1154
            ERLF  SD+Y++H+C  C  +A           K     CR C +  DIV+  +PY  KL
Sbjct: 1110 ERLFDQSDAYRVHVCEVCGLIAI-------ANLKKNSFECRGCKNKTDIVQVYIPYACKL 1162

Query: 1155 LCQELFSMGITLKFDTE 1171
            L QEL SM I  +  T+
Sbjct: 1163 LFQELMSMAIAPRMLTK 1179


>gi|302781178|ref|XP_002972363.1| hypothetical protein SELMODRAFT_172903 [Selaginella moellendorffii]
 gi|300159830|gb|EFJ26449.1| hypothetical protein SELMODRAFT_172903 [Selaginella moellendorffii]
          Length = 1178

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/1216 (34%), Positives = 641/1216 (52%), Gaps = 123/1216 (10%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP--GYDP 73
            D  EE  +        ++F E GLV  Q++S++EFI+N +Q+  D   E  ++P   ++P
Sbjct: 2    DEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESSEIEIKPESQHNP 61

Query: 74   SKKGE--GEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQF 131
             +  E  GE  +  ++FGQ+ L KP     + G+   +FP+ ARL+N+TYS+ +   +  
Sbjct: 62   GRNNEYSGETTF-KIKFGQIYLSKP-MMTESDGETATLFPKAARLRNLTYSAPLYADI-- 117

Query: 132  QVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEK 185
                       K+ T + +  +++   +E   + IG++P+M++S  C +         E 
Sbjct: 118  ----------IKYVTRKGEDGEEDTEQEELPKVFIGKVPIMLRSSYCTLYQNSDKDLTEL 167

Query: 186  GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKS-ENKRNR--- 236
            G+C +D GGYFII G+EKV +AQE++    ++V      N   +    +S    +NR   
Sbjct: 168  GECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPAS 227

Query: 237  -LIVRLVDMSKFEDIKGGEKV-LSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDC 294
             + VR++  +  +    G+ +  ++ ++  EIPI ++F ALG  +DK+I+  I +   D 
Sbjct: 228  SMFVRMLSRAGAKAGSSGQYIRATLPYIKQEIPIIVVFRALGFVADKDILEHICYDFSDT 287

Query: 295  SILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES-----TEECMNTYLFP 349
            +++ +L  S+ +A       +  + AL Y+ K  +G+T            ++ +   + P
Sbjct: 288  AMMELLRPSLEEAF----VIQNQQVALDYIGK--RGSTVGVTREKRIKYAKDILQKEMLP 341

Query: 350  SL----HGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIA 405
             +    +   +KA F GY++  LL    GRR  D+RD + NKRL+LAG LL    +    
Sbjct: 342  HVGVGEYCETKKAYFFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGSLFRQLFR 401

Query: 406  HARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVA 465
               K +   LQ+ +   + V  + Y + A  +T+GL  + +TG W        R +G+  
Sbjct: 402  KLTKDVRAYLQKCVDNGKEVN-LAYAVKAKTITSGLKYSLATGNWGQANSGNAR-AGVSQ 459

Query: 466  NLGRANPLQTLVDLRRTRQQVQYTGKV-GDARYPHPSHWGKICFLSTPDGENCGLVKNLG 524
             L R     TL  LRR    +   G++    R  H SHWG +C   TP+G+ CGLVKNL 
Sbjct: 460  VLNRLTYASTLSHLRRLNSPIGREGRLLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 519

Query: 525  VTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSEL 583
            +   ++  S   PI   L     E   + +   +    K+FV+G W+G+ ++    V  L
Sbjct: 520  LMAYITVGSAANPILVFLEEWSTENFEEISPAVIPNATKIFVNGAWVGIHREPEHLVKTL 579

Query: 584  RRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENM------GKIKSLEGKNY 637
            R+ RR+ ++ T+V + RD    E+R++ D GR  RPL +VE          I++L+ K  
Sbjct: 580  RQLRRQVDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKSDIRALQQKEA 639

Query: 638  T---FQALLDHGIIELVGTEEEEDCCTAWGIKYLLK---DIEDKKPIKFTHCELDMSFLL 691
                +  L+  G IE V TEEEE    +  I  L+    + E+     +THCE+  S +L
Sbjct: 640  GENGWHELVSKGFIEYVDTEEEETTMISMTISDLVNARLNPEEAYSDTYTHCEIHPSMIL 699

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL++ L+YPQ+PL  T  
Sbjct: 700  GVCGSIIPFPDHNQSPRNTYQS-AMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 758

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
             + L      H   LP      G NAIVA+  + GYNQEDS++MN++S++RG FRS   R
Sbjct: 759  MEHL------HFRQLP-----AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSIFYR 807

Query: 812  SYKAEVDNKEMQVK-------RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGD 864
            SY+ E       VK       R ++  M        + G  D LDDDG    G  +   D
Sbjct: 808  SYRDEEKKAGTLVKEEFERPNRETTTGM--------RHGSYDKLDDDGIAPPGTRVSGED 859

Query: 865  IVIGKYAD-------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQV 911
            ++IGK                S  D S  L+H+E GM+ +V+L++N DG  F    +R +
Sbjct: 860  VIIGKTTPLAQDETGTQAQRYSKRDQSTCLRHSESGMIDQVLLTTNADGLRFVKTRVRSI 919

Query: 912  RSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAAL 971
            R P +GDKFSS HGQKG +G   +QE+ PFT +GI PDI++NPHA PSR T GQL+E  +
Sbjct: 920  RIPQIGDKFSSRHGQKGTIGMTYTQEDMPFTQEGITPDIIVNPHAIPSRMTIGQLIECIM 979

Query: 972  GKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLI 1031
            GK  A +GK      +  ATPF   +VD I++ LH+  +   G E +Y+G TG  + ++I
Sbjct: 980  GKVAALMGK------EGDATPFTDVTVDNISKALHKCNYQLRGFETMYNGHTGRRLSAMI 1033

Query: 1032 FIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAA 1091
            FIGPT+YQRL HM +DK+  R  GPV  LTRQP   R R GG++FGEMERDC+IAHGAA 
Sbjct: 1034 FIGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAH 1093

Query: 1092 NLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVP 1149
             L ERLF  SD+Y++H+C  C    +AN+ +             CR C +  +IV+ ++P
Sbjct: 1094 FLKERLFDQSDAYRVHVCEHCGLIAIANLKKNTFE---------CRSCKNKTEIVQVHIP 1144

Query: 1150 YGAKLLCQELFSMGIT 1165
            Y  KLL QEL +M I 
Sbjct: 1145 YACKLLFQELMAMAIA 1160


>gi|302780123|ref|XP_002971836.1| hypothetical protein SELMODRAFT_148107 [Selaginella moellendorffii]
 gi|300160135|gb|EFJ26753.1| hypothetical protein SELMODRAFT_148107 [Selaginella moellendorffii]
          Length = 1178

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/1216 (34%), Positives = 641/1216 (52%), Gaps = 123/1216 (10%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP--GYDP 73
            D  EE  +        ++F E GLV  Q++S++EFI+N +Q+  D   E  ++P   ++P
Sbjct: 2    DEEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESSEIEIKPESQHNP 61

Query: 74   SKKGE--GEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQF 131
             +  E  GE  +  ++FGQ+ L KP     + G+   +FP+ ARL+N+TYS+ +   +  
Sbjct: 62   GRNNEYSGETTF-KIKFGQIYLSKP-MMTESDGETATLFPKAARLRNLTYSAPLYADI-- 117

Query: 132  QVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEK 185
                       K+ T + +  +++   +E   + IG++P+M++S  C +         E 
Sbjct: 118  ----------IKYVTRKGEDGEEDTEQEELPKVFIGKVPIMLRSSYCTLYQNSDKDLTEL 167

Query: 186  GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKS-ENKRNR--- 236
            G+C +D GGYFII G+EKV +AQE++    ++V      N   +    +S    +NR   
Sbjct: 168  GECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPAS 227

Query: 237  -LIVRLVDMSKFEDIKGGEKV-LSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDC 294
             + VR++  +  +    G+ +  ++ ++  EIPI ++F ALG  +DK+I+  I +   D 
Sbjct: 228  SMFVRMLSRAGAKAGSSGQYIRATLPYIKQEIPIIVVFRALGFVADKDILEHICYDFSDT 287

Query: 295  SILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES-----TEECMNTYLFP 349
            +++ +L  S+ +A       +  + AL Y+ K  +G+T            ++ +   + P
Sbjct: 288  AMMELLRPSLEEAF----VIQNQQVALDYIGK--RGSTVGVTREKRIKYAKDILQKEMLP 341

Query: 350  SL----HGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIA 405
             +    +   +KA F GY++  LL    GRR  D+RD + NKRL+LAG LL    +    
Sbjct: 342  HVGVGEYCETKKAYFFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGSLFRQLFR 401

Query: 406  HARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVA 465
               K +   LQ+ +   + V  + Y + A  +T+GL  + +TG W        R +G+  
Sbjct: 402  KLTKDVRAYLQKCVDNGKEVN-LAYAVKAKTITSGLKYSLATGNWGQANSGNAR-AGVSQ 459

Query: 466  NLGRANPLQTLVDLRRTRQQVQYTGKV-GDARYPHPSHWGKICFLSTPDGENCGLVKNLG 524
             L R     TL  LRR    +   G++    R  H SHWG +C   TP+G+ CGLVKNL 
Sbjct: 460  VLNRLTYASTLSHLRRLNSPIGREGRLLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLA 519

Query: 525  VTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSEL 583
            +   ++  S   PI   L     E   + +   +    K+FV+G W+G+ ++    V  L
Sbjct: 520  LMAYITVGSAANPILVFLEEWSTENFEEISPAVIPNATKIFVNGAWVGIHREPEHLVKTL 579

Query: 584  RRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENM------GKIKSLEGKNY 637
            R+ RR+ ++ T+V + RD    E+R++ D GR  RPL +VE          I++L+ K  
Sbjct: 580  RQLRRQVDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKSDIRALQQKEA 639

Query: 638  T---FQALLDHGIIELVGTEEEEDCCTAWGIKYLLK---DIEDKKPIKFTHCELDMSFLL 691
                +  L+  G IE V TEEEE    +  I  L+    + E+     +THCE+  S +L
Sbjct: 640  GENGWHELVSKGFIEYVDTEEEETTMISMTISDLVNARLNPEEAYSDTYTHCEIHPSMIL 699

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL++ L+YPQ+PL  T  
Sbjct: 700  GVCGSIIPFPDHNQSPRNTYQS-AMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA 758

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
             + L      H   LP      G NAIVA+  + GYNQEDS++MN++S++RG FRS   R
Sbjct: 759  MEHL------HFRQLP-----AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSIFYR 807

Query: 812  SYKAEVDNKEMQVK-------RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGD 864
            SY+ E       VK       R ++  M        + G  D LDDDG    G  +   D
Sbjct: 808  SYRDEEKKAGTLVKEEFERPNRETTTGM--------RHGSYDKLDDDGIAPPGTRVSGED 859

Query: 865  IVIGKYAD-------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQV 911
            ++IGK                S  D S  L+H+E GM+ +V+L++N DG  F    +R +
Sbjct: 860  VIIGKTTPLVQDETGTQAQRYSKRDQSTCLRHSESGMIDQVLLTTNADGLRFVKTRVRSI 919

Query: 912  RSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAAL 971
            R P +GDKFSS HGQKG +G   +QE+ PFT +GI PDI++NPHA PSR T GQL+E  +
Sbjct: 920  RIPQIGDKFSSRHGQKGTIGMTYTQEDMPFTQEGITPDIIVNPHAIPSRMTIGQLIECIM 979

Query: 972  GKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLI 1031
            GK  A +GK      +  ATPF   +VD I++ LH+  +   G E +Y+G TG  + ++I
Sbjct: 980  GKVAALMGK------EGDATPFTDVTVDNISKALHKCNYQLRGFETMYNGHTGRRLSAMI 1033

Query: 1032 FIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAA 1091
            FIGPT+YQRL HM +DK+  R  GPV  LTRQP   R R GG++FGEMERDC+IAHGAA 
Sbjct: 1034 FIGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAH 1093

Query: 1092 NLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVP 1149
             L ERLF  SD+Y++H+C  C    +AN+ +             CR C +  +IV+ ++P
Sbjct: 1094 FLKERLFDQSDAYRVHVCEHCGLIAIANLKKNTFE---------CRSCKNKTEIVQVHIP 1144

Query: 1150 YGAKLLCQELFSMGIT 1165
            Y  KLL QEL +M I 
Sbjct: 1145 YACKLLFQELMAMAIA 1160


>gi|115475001|ref|NP_001061097.1| Os08g0171600 [Oryza sativa Japonica Group]
 gi|113623066|dbj|BAF23011.1| Os08g0171600 [Oryza sativa Japonica Group]
          Length = 462

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/467 (68%), Positives = 380/467 (81%), Gaps = 13/467 (2%)

Query: 712  QSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGY--GHNHILPRP 769
            Q++K S QAIG+ TTNP  RVDT SHQL+YPQRPLF+T+ +DCLGK  Y  G  H   RP
Sbjct: 2    QAEKISQQAIGYSTTNPLFRVDTHSHQLYYPQRPLFKTVAADCLGKRDYTSGSKHDFARP 61

Query: 770  ELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSS 829
            E +NGQNAIV+++VH G+NQEDSLV+NRASLERGMFR++H +SYKA ++NKE+  KR   
Sbjct: 62   EYFNGQNAIVSISVHQGFNQEDSLVLNRASLERGMFRTQHFKSYKALIENKEI-TKRLKH 120

Query: 830  DDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMV 889
             + +NFGK  SK G VDSLD DG P+IGA+LQS DI+IGK +DSG DHSIKL HTE+G+V
Sbjct: 121  KENINFGKTPSKKGLVDSLDIDGLPYIGASLQSNDIIIGKVSDSGEDHSIKLLHTEKGIV 180

Query: 890  QKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPD 949
            +KVVLS+ DDG N + V+LRQ RSP +GDKF+SMHGQKGV+GFL+SQENFPFT QGIVPD
Sbjct: 181  EKVVLSATDDGTNSAFVTLRQTRSPRIGDKFASMHGQKGVIGFLDSQENFPFTHQGIVPD 240

Query: 950  IVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAG 1009
            IVINPH FP+RQTPGQLLEAALGKGIA        G  RYATPF +PSV+ ITEQLH+AG
Sbjct: 241  IVINPHGFPTRQTPGQLLEAALGKGIA------LGGATRYATPFTSPSVEVITEQLHKAG 294

Query: 1010 FSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRK 1069
            FS+WG E + +GRTGE   S +F GPTFYQRL HM+EDKVKFRNTGPVHPLTRQPV DR+
Sbjct: 295  FSRWGGESVINGRTGERAASPVFTGPTFYQRLHHMAEDKVKFRNTGPVHPLTRQPVEDRR 354

Query: 1070 RFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVV----GG 1125
            R+GG+KFGEMERDCL+AHGAAANLHERLF LSD  ++H+CR+C+  A V+   V    GG
Sbjct: 355  RYGGVKFGEMERDCLLAHGAAANLHERLFLLSDVSRLHVCRRCQRAAVVVSPAVAADGGG 414

Query: 1126 GRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTEF 1172
            GRKVRGPYCR C S +++V+ +VPYGAK+L QELFSMGI LKFDTE 
Sbjct: 415  GRKVRGPYCRFCRSAEEVVRVSVPYGAKILYQELFSMGICLKFDTEL 461


>gi|70794966|gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
          Length = 1191

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1200 (35%), Positives = 642/1200 (53%), Gaps = 114/1200 (9%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP--GYDPSKKGEGEWRYASMRFG 89
            ++F E GLV  Q++S++EFI+N +Q+  D   +  + P   ++P  + +       + FG
Sbjct: 31   AYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETIYKISFG 90

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
            Q+ L KP     + G+   +FP+ ARL+N+TYS+ + V V       KRV     K G +
Sbjct: 91   QIYLSKP-MMTESDGETATLFPKAARLRNLTYSAPLYVDVT------KRV----IKKGHD 139

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
               ++   + + T + IG++P+M++S  C +         E G+C +D GGYFII G+EK
Sbjct: 140  G--EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 197

Query: 204  VFVAQEQICLKRLWV-----SNSMGWTVAYKS-ENKRNR----LIVRLVDMSKFEDIKGG 253
            V +AQE++    ++V      N   +    +S    +NR    + VR++  +  +    G
Sbjct: 198  VLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSG 257

Query: 254  EKV-LSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD 312
            + +  ++ ++ TEIPI I+F ALG  +DK+I+  I +   D  ++ +L  S+ +A     
Sbjct: 258  QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAF---- 313

Query: 313  EFRKGRNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSL----HGTKQKARFLGY 363
              +  + AL Y+ K  +G T    +       +E +   + P +    +   +KA + GY
Sbjct: 314  VIQNQQVALDYIGK--RGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGY 371

Query: 364  MVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDR 423
            ++  LL    GRR  D+RD + NKRL+LAG LL    ++      + +   +Q+ +   +
Sbjct: 372  IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGK 431

Query: 424  TVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTR 483
             V  +++ + A  +T+GL  + +TG W        R +G+   L R     TL  LRR  
Sbjct: 432  DVN-LQFAIKAKTITSGLKYSLATGNWGQANAAGTR-AGVSQVLNRLTYASTLSHLRRLN 489

Query: 484  QQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLF 542
              +   GK+   R  H S WG +C   TP+G+ CGLVKNL +   ++  S   PI E L 
Sbjct: 490  SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLE 549

Query: 543  NSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
              G E   + +   +    K+FV+G W+G+ +D    V  LRR RRR ++ T+V + RD 
Sbjct: 550  EWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDI 609

Query: 603  LQSEVRIFMDAGRILRPLLVVENM------GKIKSLEGKNYT----FQALLDHGIIELVG 652
               E+RI+ D GR  RPL +VE          I++L+ +       +  L+  G IE + 
Sbjct: 610  RLKELRIYTDYGRCSRPLFIVEKQRLLIKRKDIQALQQRETPEDGGWHDLVAKGFIEYID 669

Query: 653  TEEEEDCCTAWGIKYLLK---DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRV 709
            TEEEE    +  I  L+    + E+     +THCE+  S +LG+   IIPF +H+ + R 
Sbjct: 670  TEEEETTMISMTINDLVSARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRN 729

Query: 710  LYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRP 769
             YQS     QA+G   TN   R+DT+++ L+YPQ+PL  T   + L      H   LP  
Sbjct: 730  TYQS-AMGKQAMGIYVTNYQFRMDTVAYVLYYPQKPLVTTRAMEHL------HFRQLP-- 780

Query: 770  ELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSS 829
                G NAIVA+  + GYNQEDS++MN++S++RG FRS   RSY+ E       VK    
Sbjct: 781  ---AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE--- 834

Query: 830  DDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD----------- 872
                +FG+      +  + G  D LDDDG    G  +   D+VIGK              
Sbjct: 835  ----DFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVVIGKTTPIAQDEAQGPAA 890

Query: 873  --SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVL 930
              +  DHS  L+H+E GMV +V+L++N DG  F  V +R VR P +GDKFSS HGQKG +
Sbjct: 891  RYTRRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTV 950

Query: 931  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYA 990
            G   +QE+ P+T++GI PDI++NPHA PSR T GQL+E  +GK  A +GK      +  A
Sbjct: 951  GMTYTQEDMPWTMEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK------EGDA 1004

Query: 991  TPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVK 1050
            TPF   +VD I++ LH+ G+   G E +Y+G TG  + S+IF+GPT+YQRL HM +DK+ 
Sbjct: 1005 TPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLTSMIFLGPTYYQRLKHMVDDKIH 1064

Query: 1051 FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICR 1110
             R  GPV  LTRQP   R R GG++FGEMERDC+IAHGAA  L ERLF  SD+Y++H+C 
Sbjct: 1065 SRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCE 1124

Query: 1111 KCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
            +C  +A           K     CR C +  DIV+ ++PY  KLL QEL SM I  +  T
Sbjct: 1125 RCGLIAI-------ANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLT 1177


>gi|350534526|ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum]
 gi|11134656|sp|Q42877.1|RPB2_SOLLC RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2; AltName: Full=DNA-directed RNA polymerase II 135 kDa
            polypeptide
 gi|1049068|gb|AAC49273.1| RNA polymerase II subunit 2 [Solanum lycopersicum]
          Length = 1191

 Score =  661 bits (1706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/1232 (34%), Positives = 654/1232 (53%), Gaps = 115/1232 (9%)

Query: 1    MDSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFD 60
            MD +D  +    ++ D  EE  +        ++F E GLV  Q++S++EFI+N +Q+  D
Sbjct: 1    MDMEDE-YEPQYNVDDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVD 59

Query: 61   SFGETIVEP--GYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQN 118
               +  + P   ++P  + +       + FGQ+ L KP     + G+   +FP+ ARL+N
Sbjct: 60   ESADIEIRPESQHNPGHQSDFAETIYKINFGQIYLSKP-MMTESDGETATLFPKAARLRN 118

Query: 119  MTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLC 178
            +TYS+ + V V       KRV     K G +   ++   + + T + IG++P+M++S  C
Sbjct: 119  LTYSAPLYVDVT------KRV----IKKGHDG--EEVTETQDFTKVFIGKVPIMLRSSYC 166

Query: 179  WMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVA 227
             +         E G+C  D GGYFII G+EKV +AQE++    ++V      N   +   
Sbjct: 167  TLYQNSEKDLTELGECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAE 226

Query: 228  YKS-ENKRNR----LIVRLVDMSKFEDIKGGEKV-LSVYFLSTEIPIWILFFALGVSSDK 281
             +S  + +NR    + VR++  +  +    G+ +  ++ ++ TEIPI I+F ALG  +DK
Sbjct: 227  VRSMADTQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADK 286

Query: 282  EIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES--- 338
            +I+  I +   D  ++ +L  S+ +A       +  + AL Y+ K  +G T         
Sbjct: 287  DILEHICYDFNDTQMMELLRPSLEEAF----VIQNQQVALDYIGK--RGATVGVTREKRI 340

Query: 339  --TEECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELA 392
               +E +   + P +    +   +KA + GY++  LL    GRR  D+RD + NKRL+LA
Sbjct: 341  KYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLA 400

Query: 393  GELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSH 452
            G LL    ++      + +   +Q+ +   + V  +++ + A  +T+GL  + +TG W  
Sbjct: 401  GPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVN-LQFAIKAKTITSGLKYSLATGNWGQ 459

Query: 453  PFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTP 512
                  R +G+   L R     TL  LRR    +   GK+   R  H S WG +C   TP
Sbjct: 460  ANAAGTR-AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETP 518

Query: 513  DGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIG 571
            +G+ CGLVKNL +   ++  S   PI E L   G E   + +   +    K+FV+G W+G
Sbjct: 519  EGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGTWVG 578

Query: 572  VCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENM----- 626
            + +D    V  LRR RRR ++ T+V + RD    E+RI+ D GR  RPL +VE       
Sbjct: 579  IHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLMIK 638

Query: 627  -GKIKSLEGKNYT----FQALLDHGIIELVGTEEEEDCCTAWGIKYLLK---DIEDKKPI 678
               I++L+ +       +  L+  G IE + TEEEE    +  I  L++   +  D    
Sbjct: 639  KKDIQTLQQRESPDEGGWHDLVAKGYIEYIDTEEEETTMISMTINDLVQARLNPGDAYSD 698

Query: 679  KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQ 738
             +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN   R+DTL++ 
Sbjct: 699  TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGIYVTNYQFRMDTLAYV 757

Query: 739  LFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRA 798
            L+YPQ+PL  T   + L      H   LP      G NAIVA++ + GYNQEDS++MN++
Sbjct: 758  LYYPQKPLVTTRAMEHL------HFRQLP-----AGINAIVAISCYSGYNQEDSVIMNQS 806

Query: 799  SLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK------IQSKIGRVDSLDDDG 852
            S++RG FRS   RSY+ E       VK        +FG+      +  + G  D LDDDG
Sbjct: 807  SIDRGFFRSLFFRSYRDEEKKMGTLVKE-------DFGRPDRASTMGMRHGSYDKLDDDG 859

Query: 853  FPFIGANLQSGDIVIGKYAD-------------SGADHSIKLKHTERGMVQKVVLSSNDD 899
                G  +   D++IGK                +  DHS  L+H+E GMV +V+L++N D
Sbjct: 860  LAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHSETGMVDQVLLTTNAD 919

Query: 900  GKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPS 959
            G  F  V +R VR P +GDKFSS HGQKG +G   +QE+ P+T++GI PDI++NPHA PS
Sbjct: 920  GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 979

Query: 960  RQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLY 1019
            R T GQL+E  +GK  A +GK      +  ATPF   +VD I++ LH+ G+   G E +Y
Sbjct: 980  RMTIGQLIECIMGKVAAHMGK------EGDATPFTDVTVDNISKALHKCGYQMRGFETMY 1033

Query: 1020 DGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEM 1079
            +G TG  + ++IF+GPT+YQRL HM +DK+  R  GPV  LTRQP   R R GG++FGEM
Sbjct: 1034 NGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEM 1093

Query: 1080 ERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDS 1139
            ERDC+IAHGAA  L ERLF  SD+Y++H+C +C  +A           K     CR C +
Sbjct: 1094 ERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAI-------ANLKKNSFECRGCKN 1146

Query: 1140 GDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
              DIV+ ++PY  KLL QEL +M I  +  T+
Sbjct: 1147 KTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1178


>gi|357438193|ref|XP_003589372.1| DNA-directed RNA polymerase [Medicago truncatula]
 gi|355478420|gb|AES59623.1| DNA-directed RNA polymerase [Medicago truncatula]
          Length = 1213

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/1219 (34%), Positives = 646/1219 (52%), Gaps = 132/1219 (10%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP--GYDPSKKGEGEWRYASMRFG 89
            ++F E GLV  Q++S++EFI+N +Q+  D   +  + P   ++P  + +       + FG
Sbjct: 35   AYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETIYKISFG 94

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
            Q+ L KP     + G+   +FP+ ARL+N+TYS+ + V V       KRV     K G +
Sbjct: 95   QIYLSKP-MMTESDGETATLFPKAARLRNLTYSAPLYVDVS------KRV----IKKGHD 143

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
               ++   + + T + IG++P+M++S  C +         E G+C +D GGYFII G+EK
Sbjct: 144  G--EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEK 201

Query: 204  VFVAQEQICLKRLWV-----SNSMGWTVAYKS-ENKRNR----LIVRLVDMSKFEDIKGG 253
            V +AQE++    ++V      N   +    +S    +NR    + VR++  +  +    G
Sbjct: 202  VLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAESQNRPPSTMFVRMLSRASAKGGSSG 261

Query: 254  EKV-LSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD 312
            + +  ++ ++ TEIPI I+F ALG  +DK+I+  I +   D  ++ +L  S+ +A     
Sbjct: 262  QYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAF---- 317

Query: 313  EFRKGRNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSL----HGTKQKARFLGY 363
              +  + AL Y+ K  +G+T    +       ++ +   + P +    +   +KA + GY
Sbjct: 318  VIQNQQVALDYIGK--RGSTVGVTKEKRIKYAKDILQKEMLPHVGVGEYCETKKAYYFGY 375

Query: 364  MVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDR 423
            ++  LL    GRR  D+RD + NKRL+LAG LL    ++      + +   +Q+ +   +
Sbjct: 376  IIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGK 435

Query: 424  TVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTR 483
             V  +++ + A  +T+GL  + +TG W        R +G+   L R     TL  LRR  
Sbjct: 436  DVN-LQFAIKAKTITSGLKYSLATGNWGQANAAGTR-AGVSQVLNRLTYASTLSHLRRLN 493

Query: 484  QQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLF 542
              +   GK+   R  H S WG +C   TP+G+ CGLVKNL +   ++  S   PI E L 
Sbjct: 494  SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLE 553

Query: 543  NSGMEK--------LADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRR----- 589
              G E         + + +   +    K+FV+G W+G+ +D    V  LR+ RRR     
Sbjct: 554  EWGTENFEVLVISFIKEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTLRKLRRRFSAEG 613

Query: 590  -----KELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENM------GKIKSLEGKNYT 638
                  ++ T+V + RD    E+RI+ D GR  RPL +V+          I SL+ +   
Sbjct: 614  FDVVQVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHSLQQRESP 673

Query: 639  ----FQALLDHGIIELVGTEEEEDCCTAWGIKYLLK---DIEDKKPIKFTHCELDMSFLL 691
                +  L+  G IE + TEEEE    +  I  L++   + E+     +THCE+  S +L
Sbjct: 674  EDGGWHDLVSKGFIEYIDTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLIL 733

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G+   IIPF +H+ + R  YQS     QA+G   TN   R+DTL++ L+YPQ+PL  T  
Sbjct: 734  GVCASIIPFPDHNQSPRNTYQS-AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 792

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
             + L      H   LP      G NAIVA++ + GYNQEDS++MN++S++RG FRS   R
Sbjct: 793  MEHL------HFRQLP-----AGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFR 841

Query: 812  SYKAEVDNKEMQVKRRSSDDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDI 865
            SY+ E       VK        +FG+      +  + G  D LDDDG    G  +   D+
Sbjct: 842  SYRDEEKKMGTLVKE-------DFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDV 894

Query: 866  VIGKYAD-------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVR 912
            +IGK                S  DHSI L+H+E G+V +V+L++N DG  F  V +R VR
Sbjct: 895  IIGKTTPLSQEEQQGQAARYSKRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVR 954

Query: 913  SPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALG 972
             P +GDKFSS HGQKG +G   +QE+ P+T++GI PDI++NPHA PSR T GQL+E  +G
Sbjct: 955  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 1014

Query: 973  KGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIF 1032
            K  A +GK      +  ATPF   +VD I++ LH+ G+   G E +Y+G TG  + ++IF
Sbjct: 1015 KVAAHMGK------EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIF 1068

Query: 1033 IGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAAN 1092
            +GPT+YQRL HM +DK+  R  GPV  LTRQP   R R GG++FGEMERDC+IAHGAA  
Sbjct: 1069 LGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHF 1128

Query: 1093 LHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGA 1152
            L ERLF  SD+Y++H+C +C  +A           K     CR C +  DIV+  +PY  
Sbjct: 1129 LKERLFDQSDAYRVHVCERCGLIAI-------ANLKKNSFECRGCKNKTDIVQVYIPYAC 1181

Query: 1153 KLLCQELFSMGITLKFDTE 1171
            KLL QEL +M I  +  T+
Sbjct: 1182 KLLFQELMAMAIAPRMLTK 1200


>gi|409083783|gb|EKM84140.1| hypothetical protein AGABI1DRAFT_117576 [Agaricus bisporus var.
            burnettii JB137-S8]
          Length = 1220

 Score =  661 bits (1705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/1237 (33%), Positives = 649/1237 (52%), Gaps = 127/1237 (10%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSK 75
            D  EE  +  C     SFF + GLV  Q++S++EF++N +Q+  D   + I++     + 
Sbjct: 21   DSYEEITQEDCWTVISSFFEQKGLVRQQLDSFDEFVQNTMQELVDENSDLILDQADQHTG 80

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT 135
                  R   ++FGQ+ L +P+    +G     +FP+ ARL+N+TYS+ + ++++ +V  
Sbjct: 81   HETDMTRRYEIKFGQIYLSRPTVTEADGS-VVPVFPQEARLRNLTYSAPLYIEMRKRVLV 139

Query: 136  QKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CD 189
             +       +   E   +KE   D+ T + IG++P+M++S  C ++G++  D      C 
Sbjct: 140  GREDPDTPGEIAWEA--EKEDHPDDATKVWIGKVPIMLRSTFCILRGLQDQDLYDLNECP 197

Query: 190  FDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKRNRLIVRLVDM 244
            +D GGYFII G+EKV +AQE++    ++V      + + +    +S  ++    +    +
Sbjct: 198  YDSGGYFIINGSEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQV 257

Query: 245  SKF----EDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNIL 300
              F    E   G     ++ ++  +IPIW++F  LGV SD++I+  I +  +D  +L +L
Sbjct: 258  KMFHRNQERSLGNVMKATIPYIKVDIPIWVVFRGLGVISDRDILEHICYDMQDAQMLEML 317

Query: 301  FASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLH- 352
               I D     D       AL ++    +GTT   G S E       E +   + P +  
Sbjct: 318  KPCIDDGFVIQDR----EVALDFIGN--RGTT--TGLSRERRIRYAQEILQKEMLPHVSM 369

Query: 353  ---GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARK 409
                  +KA F GYM+  LL A   RR+ D+RD F  KRL+LAG LL    ++      K
Sbjct: 370  AEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTK 429

Query: 410  RMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGR 469
             + + LQ+ +   +    +   +    +TNGL  + +TG W    K     +G+   L R
Sbjct: 430  DVYRYLQKCVETHKEFN-LALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNR 488

Query: 470  ANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLV 529
                 TL  LRR    +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +
Sbjct: 489  YTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCI 548

Query: 530  ST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRR 588
            S  S   P+ E L   G+E L ++A +S     KVFV+G W+GV +D  + V  +++ RR
Sbjct: 549  SVGSYSAPVIEFLEEWGLESLEENA-HSTSPCTKVFVNGVWMGVHRDPANLVKTIKKLRR 607

Query: 589  RKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN----MGK--IKSL------EGKN 636
            + ++  +V + RD  + E+RI+ DAGR+ RPL +VEN    +GK  I+ L      EG  
Sbjct: 608  KDDISPEVSVVRDIREKELRIYTDAGRVCRPLFIVENQQLLLGKRHIRWLNSGSDDEGNE 667

Query: 637  YTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKK-------------------- 676
            Y ++ L+  G+IEL+  EEEE       I    +D+E+ +                    
Sbjct: 668  YKWEQLIKGGVIELLDAEEEETVM----ISMTPEDLENSRLQAAGVDPHANDGDFDPAAR 723

Query: 677  ------PIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSI 730
                     +THCE+  S +LG+   IIPF +H+ + R  YQS   + QA+G   TN  I
Sbjct: 724  LKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS-AMAKQAMGIYLTNFLI 782

Query: 731  RVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQE 790
            R+DT+++ L+YPQ+PL  T   +            L   EL  GQNAIVA+  + GYNQE
Sbjct: 783  RMDTMANILYYPQKPLATTRSME-----------YLKFRELPAGQNAIVAILCYSGYNQE 831

Query: 791  DSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDD 850
            DS++MN++S++RG+FRS + RSY  +++ K    +    +       ++ K G  D L+D
Sbjct: 832  DSVIMNQSSIDRGLFRSIYYRSY-MDLEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKLED 890

Query: 851  DGFPFIGANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLS 895
            DG    G  ++  DI+IGK A                +  D S  LK TE G+V +V+++
Sbjct: 891  DGLIAPGTGVRGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTEIGIVDQVLIT 950

Query: 896  SNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPH 955
            +N +G+ F  V +R  R P +GDKF+S HGQKG +G    QE+ PFT +GIVPD++INPH
Sbjct: 951  TNSEGQKFVKVRVRATRIPQIGDKFASRHGQKGTVGITYRQEDMPFTAEGIVPDLIINPH 1010

Query: 956  AFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGT 1015
            A PSR T G L+E  L K    +G       +  ATPF   +V++++  L + G+   G 
Sbjct: 1011 AIPSRMTIGHLVECLLSKVATLIGN------EGDATPFTDLTVESVSTFLRQKGYQSRGL 1064

Query: 1016 ERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIK 1075
            E +Y G TG  +++ I++GPT+YQRL HM +DK+  R  GPV  LTRQPV  R R GG++
Sbjct: 1065 EVMYHGHTGRKLQAQIYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLR 1124

Query: 1076 FGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKC--KNVANVIQRVVGGGRKVRGPY 1133
            FGEMERDC+I+HG A  L ERLF  SD+Y++H+C  C    +AN+ ++            
Sbjct: 1125 FGEMERDCMISHGIAGFLKERLFEASDAYRLHVCDICGLTAIANLKKQTFE--------- 1175

Query: 1134 CRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
            CR C +     +  +PY AKLL QEL SM I  +  T
Sbjct: 1176 CRSCKNKTACSQIYIPYAAKLLFQELQSMNIAARLYT 1212


>gi|449433841|ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cucumis
            sativus]
 gi|449479313|ref|XP_004155566.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cucumis
            sativus]
          Length = 1199

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/1222 (34%), Positives = 647/1222 (52%), Gaps = 118/1222 (9%)

Query: 13   SLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP--G 70
            ++ D  EE  +        ++F E GLV  Q++S++EFI+N +Q+  D   +  + P   
Sbjct: 20   AIPDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQ 79

Query: 71   YDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQ 130
            ++P  + +       + FGQ+ L KP     + G+   +FP+ ARL+N+TYS+ + V V 
Sbjct: 80   HNPGHQSDVAETIYKISFGQIYLSKP-MMTESDGETATLFPKAARLRNLTYSAPLYVDVS 138

Query: 131  FQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VE 184
                  KRV     K G +   ++   + + T + IG++P+M++S  C +         E
Sbjct: 139  ------KRV----IKKGHDG--EEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTE 186

Query: 185  KGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKS-ENKRNR-- 236
             G+C +D GGYFII G+EKV +AQE++    ++V      N   +    +S    +NR  
Sbjct: 187  LGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAEVRSMAESQNRPP 246

Query: 237  --LIVRLVDMSKFEDIKGGEKV-LSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCED 293
              + VR++  +  +    G+ +  ++ ++  EIPI I+F ALG  +DK+I+  I +   D
Sbjct: 247  STMFVRMLSRTSAKGGSSGQYIRATLPYIRNEIPIIIVFRALGFVADKDILEHICYDFSD 306

Query: 294  CSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES-----TEECMNTYLF 348
              ++ +L  S+ +A       +  + AL Y+ K  +G+T    +       +E +   + 
Sbjct: 307  TQMMELLRPSLEEAFV----IQNQQVALDYIGK--RGSTVGVTKEKRIKYAKEILQKEML 360

Query: 349  PSL----HGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHI 404
            P +        +KA + GY++  LL    GRR  D+RD + NKRL+LAG LL    ++  
Sbjct: 361  PHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLF 420

Query: 405  AHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIV 464
                + +   +Q+ +   + V  +++ + A  +T+GL  + +TG W        R +G+ 
Sbjct: 421  RKLTRDVRGYVQKCVDNGKDVN-LQFAIKAKTITSGLKYSLATGNWGQANAAGTR-AGVS 478

Query: 465  ANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLG 524
              L R     TL  LRR    +   GK+   R  H S WG +C   TP+G+ CGLVKNL 
Sbjct: 479  QVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 538

Query: 525  VTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSEL 583
            +   ++  S   PI E L   G E   + +   +    K+FV+G W+G+ +D    V  L
Sbjct: 539  LMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTL 598

Query: 584  RRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENM------GKIKSLEGKNY 637
            RR RRR ++ T+V + RD    E+RI+ D GR  RPL +VE          I +L+ +  
Sbjct: 599  RRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIKKKDIHALQQRES 658

Query: 638  T----FQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIK-----FTHCELDMS 688
                 +  L+  G IE + TEEEE    +  I  L++      P++     +THCE+  S
Sbjct: 659  PEDGGWHDLVAKGFIEYIDTEEEETTMISMTISDLIQ--ARINPVEAYSDTYTHCEIHPS 716

Query: 689  FLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFR 748
             +LG+   IIPF +H+ + R  YQS     QA+G   TN   R+DTL++ L+YPQ+PL  
Sbjct: 717  LILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVT 775

Query: 749  TMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSE 808
            T   + L      H   LP      G NAIVA+  + GYNQEDS++MN++S++RG FRS 
Sbjct: 776  TRAMEHL------HFRQLP-----AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSL 824

Query: 809  HIRSYKAEVDNKEMQVKRRSSDDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQS 862
              RSY+ E       VK        +FG+      +  + G  D LDDDG    G  +  
Sbjct: 825  FFRSYRDEEKKMGTLVKE-------DFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSG 877

Query: 863  GDIVIGKYAD-------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLR 909
             D++IGK                S  DHSI L+H+E G+V +V+L++N DG  F  V +R
Sbjct: 878  EDVIIGKTTPISQEEAQGQAARYSRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVR 937

Query: 910  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEA 969
             VR P +GDKFSS HGQKG +G   +QE+ P+T++GI PDI++NPHA PSR T GQL+E 
Sbjct: 938  SVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIEC 997

Query: 970  ALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRS 1029
             +GK  A +GK      +  ATPF   +VD I++ LH+ G+   G E +Y+G TG  + +
Sbjct: 998  IMGKVAAHMGK------EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSA 1051

Query: 1030 LIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA 1089
            +IF+GPT+YQRL HM +DK+  R  GPV  LTRQP   R R GG++FGEMERDC+IAHGA
Sbjct: 1052 MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGA 1111

Query: 1090 AANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVP 1149
            A  L ERLF  SD+Y++H+C  C  +A           K     CR C +  DIV+  +P
Sbjct: 1112 AHFLKERLFDQSDAYRIHVCECCGLIAI-------ANLKKSSFECRGCKNKTDIVQVYIP 1164

Query: 1150 YGAKLLCQELFSMGITLKFDTE 1171
            Y  KLL QEL +M I  +  T+
Sbjct: 1165 YACKLLFQELMAMAIAPRMFTK 1186


>gi|403331439|gb|EJY64666.1| DNA-directed RNA polymerase [Oxytricha trifallax]
          Length = 1198

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/1202 (34%), Positives = 634/1202 (52%), Gaps = 105/1202 (8%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSF--GETIVEPGYDPS--KKGEGEWRYASMR 87
            S+F ++GLVS QI+S+N F++  +Q+           VEP Y PS  +    E  Y  + 
Sbjct: 35   SYFKQHGLVSQQISSFNRFLEMNVQEIVKEHKHNRIKVEPQYLPSEGRDSTQENIYYDVI 94

Query: 88   FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
            F QV ++       +      +FP  AR++N+TY++ + V V+ Q   Q        + G
Sbjct: 95   FEQVHVNNSPRIQESDESYQAVFPHEARIRNLTYATEIYVDVKLQKLQQIPYDKTGLRDG 154

Query: 148  REQYIQKEVLSD-ETTNIIIGRIPVMVKSDLCWMKGVE-------KGDCDFDHGGYFIIK 199
             ++  +  +L D +     +G++PVMV+S  C ++ ++         +C +D GGYF+I 
Sbjct: 155  EKREPKFTILEDSKPIQTFLGKVPVMVRSKFCHLRNLQDHEIVRNAKECLYDQGGYFVIN 214

Query: 200  GAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGE 254
            G EKV +AQE++    + V      +   W    +S+ + +    +   ++  E IK GE
Sbjct: 215  GGEKVIIAQERMANNIVLVFHRRPPSKYSWVAEIRSQAENSNKPPQQFMVAIQEKIKLGE 274

Query: 255  K---------VLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIH 305
            +           ++  +   IP+ IL  ALG  SDK+I+N I +  ED  +   L  S+ 
Sbjct: 275  QGGGNYARTICATIPAIREPIPVAILMRALGCVSDKQIINKICYDPEDSEMCESLKPSLE 334

Query: 306  DADNKCDEFRKGRNALKYVDKLIKGTTFPPG---ESTEECMNTYLFPSL----HGTKQKA 358
             A     E     +AL ++ K   G  +      +  ++ + T   P +     G  +K+
Sbjct: 335  QAMTVMTE----EDALDFISKRGSGAQYSRDTRIQYAQKILETEFLPHVSMNAEGLYKKS 390

Query: 359  RFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRD 418
             F+GYMV  L+QA  GR   D+RD +  KR+++AG LL    +         M K L+RD
Sbjct: 391  YFVGYMVNRLIQASLGRTSEDDRDYYGKKRMDMAGSLLSGLFRQLFRQTTDDMLKYLKRD 450

Query: 419  LYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVD 478
            +   + +  +   + +  ++ GL  A +TG W    +   + +G+   L R     +L  
Sbjct: 451  IDNGKQILSLASAIKSDTISRGLKSALATGNWGKDKQGDVQKTGVAQVLNRLTFASSLSH 510

Query: 479  LRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPI 537
            LRR    +  +GK+   R  H SHWG +C   TP+G+ CGLVKNL +  LVS  S  + +
Sbjct: 511  LRRLNTPLAKSGKLTKPRQLHNSHWGMVCPAETPEGQACGLVKNLSLMSLVSVGSPNKTL 570

Query: 538  FEQLFNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQ 595
             E L + G+E L       L  K   KVFV+G+WIG  +++   V  ++  RR   +P +
Sbjct: 571  IEILEDFGVEDLTSLDPIILQNKELVKVFVNGNWIGCHRNATDLVKNIKDMRRTYTIPKE 630

Query: 596  VEIKRDELQSEVRIFMDAGRILRPLLVVENMG------KIKSLEGKNYTFQALLDHGIIE 649
            + I RD    E++ F D+GR+ RPL +VEN         I  L   +  F+ LL  G+ E
Sbjct: 631  ISIVRDIYTKEIKFFTDSGRVQRPLFIVENSALRIKKFHIPQLINGSKNFEDLLQEGLCE 690

Query: 650  LVGTEEEEDCCTAWGIKYLLKDIEDKKPIKF--THCELDMSFLLGLSCGIIPFANHDHAR 707
             +  EEEE    A      L D++ +K I++  THCE+  S +LG+   IIPF +H+ + 
Sbjct: 691  FLDVEEEETVMIAM----TLDDLKGQKAIEYHYTHCEIHPSMILGVCASIIPFPDHNQSP 746

Query: 708  RVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILP 767
            R  YQS     QA+G  T+N  +R+DTL+H L+YPQ+PL       C     + H     
Sbjct: 747  RNTYQS-AMGKQAMGVYTSNYQMRMDTLAHVLYYPQKPLV------CTKSMEFLHFK--- 796

Query: 768  RPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRR 827
              EL +G NA +A+  + GYNQEDS+++N+++++RG FRS   R+Y  +  +KE +V   
Sbjct: 797  --ELSSGLNASIAIACYTGYNQEDSIMLNQSAIDRGFFRSVFFRTY--DDCSKEGEVFA- 851

Query: 828  SSDDMVNFGKIQS-KIGRVDSLDDDGFPFIGANLQSGDIVIGKYA------------DSG 874
                + +F K    K G  D LD DG    G  +   DI++GK A            DS 
Sbjct: 852  ----IPDFAKTSGRKHGDYDKLDIDGLICPGVLVSGDDIIVGKVAKMTSNTFNEDLRDST 907

Query: 875  A----DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVL 930
            A    D S  LKH+E G++ +V+L++ND+ + F+ V +R VR P +GDKF+S HGQKG  
Sbjct: 908  AKKFKDCSTPLKHSESGIIDQVILTTNDEAQKFTKVKMRAVRIPQIGDKFASRHGQKGTC 967

Query: 931  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYA 990
            G    QE+ PFT +G+VPD+++NPHA PSR T G L+E  L K +A+L     +G +  A
Sbjct: 968  GMTYRQEDLPFTREGVVPDMIVNPHAIPSRMTIGHLIECLLSK-VASL-----NGSEGDA 1021

Query: 991  TPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVK 1050
            TPF   +VD I++ LH  G+ ++G E +Y+G TG     LIF+GPTFYQRL HM  DK+ 
Sbjct: 1022 TPFCGQNVDEISQLLHELGYQRYGNEVMYNGFTGRKFEVLIFLGPTFYQRLKHMVGDKIH 1081

Query: 1051 FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICR 1110
             R  GP   LTRQP   R R GG++FGEMERDC+I+HGAA  L ERLF +SD Y++HIC+
Sbjct: 1082 SRGRGPTQILTRQPTEGRSRDGGLRFGEMERDCMISHGAARFLKERLFDVSDCYRVHICQ 1141

Query: 1111 KCKNV--ANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
             C  +  AN+ ++            C  C++  +I +  +PY AKLL QEL +M +  + 
Sbjct: 1142 TCGLICQANLAEQRYE---------CNNCNNTSNICQVKIPYAAKLLIQELMAMQLAPRL 1192

Query: 1169 DT 1170
             T
Sbjct: 1193 RT 1194


>gi|344323318|gb|AEN14442.1| DNA-dependent RNA polymerase II second largest subunit [Lentinula
            edodes]
          Length = 1228

 Score =  658 bits (1697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1257 (33%), Positives = 656/1257 (52%), Gaps = 136/1257 (10%)

Query: 4    DDNGFTDPTSLCDLGE-----EFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKA 58
            D   F DP    D  E     E  +  C     SFF + GLV  Q++S++EF++N +Q+ 
Sbjct: 10   DSYAFDDPNFGMDDEEDDQYSEITQEDCWTVISSFFEQKGLVRQQLDSFDEFVQNTMQEL 69

Query: 59   FDSFGETIVEPGYDPS-KKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQ 117
             D   + I++     S ++G+   RY  +RFGQ+ L +P+    +G     +FP+ ARL+
Sbjct: 70   VDENADLILDQQDQHSGREGDMTRRY-EIRFGQIYLSRPTVTEADGS-VVPVFPQEARLR 127

Query: 118  NMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDL 177
            N+TYS+ + ++++ +V    R   D          + +   + +T + IG++P+M++S  
Sbjct: 128  NLTYSAPLYIEMKKKVMV-GREDPDGVPGDMAWETENDDGPENSTKVWIGKVPIMLRSTF 186

Query: 178  CWMKGVEKGD------CDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTV 226
            C ++G+   D      C +D GGYFII G+EKV +AQE++    ++V      + + +  
Sbjct: 187  CILRGLADQDLYDLNECPYDSGGYFIINGSEKVLIAQERMATNHVYVFAKAQPSPINFLA 246

Query: 227  AYKSENKRNRLIVRLVDMSKFEDIKGGEKVL------SVYFLSTEIPIWILFFALGVSSD 280
              +S  ++    +    +  F   +G E+ +      ++ ++  +IPIW++F  LGV SD
Sbjct: 247  EIRSAVEKGGKTISQFQVKMFH--RGQERAMGNVMKATIPYIKVDIPIWVVFRGLGVISD 304

Query: 281  KEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTE 340
            ++I+  I +  +D  +L +L   I +     D       AL ++    +GTT   G S E
Sbjct: 305  RDILEHICYDMQDAQMLEMLKPCIDEGFVIQDR----EVALDFIGN--RGTT--TGLSRE 356

Query: 341  -------ECMNTYLFPSLH----GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRL 389
                   E +   + P +        +KA F GYM+  LL A   RR+ D+RD F  KRL
Sbjct: 357  KRIRYAQEILQKEMLPHVSMAEGSESKKAFFFGYMIHRLLLAALERRELDDRDHFGKKRL 416

Query: 390  ELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGA 449
            +LAG LL    ++      K + + +Q+ +   +    +   +    +TNGL  + +TG 
Sbjct: 417  DLAGPLLANLFRMLFRKLTKDVYRYMQKCVETHKEFN-LALAVKHQTITNGLKYSLATGN 475

Query: 450  WSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFL 509
            W    K     +G+   L R     TL  LRR    +   GK+   R  H +HWG +C  
Sbjct: 476  WGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPA 535

Query: 510  STPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGD 568
             TP+G+ CGLVKNL +   +S  S   P+ E L   G+E L ++A  S     KVFV+G 
Sbjct: 536  ETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSSTPTMTKVFVNGV 595

Query: 569  WIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENM-- 626
            W+GV ++  + V  +R+ RR+ ++  +V + RD  + E+R++ DAGR+ RPL +VEN   
Sbjct: 596  WMGVHREPANLVKTIRKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQL 655

Query: 627  ----GKIKSL------EGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKK 676
                  IK L      EG  + ++ L+ +GI+EL+  EEEE       I    +D+E+ +
Sbjct: 656  VLQKKHIKWLLNGQNDEGSEFKWEHLVKNGIVELLDAEEEETVM----ISMTPEDLENSR 711

Query: 677  PIK--------------------------FTHCELDMSFLLGLSCGIIPFANHDHARRVL 710
              +                          +THCE+  S +LG+   IIPF +H+ + R  
Sbjct: 712  LQQQGIDPHENDGEFDPAARLKAGISAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNT 771

Query: 711  YQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPE 770
            YQS     QA+G   TN  IR+DT+++ L+YPQ+PL  T   +            L   E
Sbjct: 772  YQS-AMGKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSME-----------YLKFRE 819

Query: 771  LYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSD 830
            L  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS + RSY  +++ K    +    +
Sbjct: 820  LPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSY-MDLEKKSGVQQLEEFE 878

Query: 831  DMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---------------DSGA 875
                   ++ K G  D L+DDG    G  ++  DI+IGK A                +  
Sbjct: 879  KPTRDNTLRMKHGTYDKLEDDGLIAPGTGVRGEDIIIGKTAPIPPDSEELGQRTRTHTRR 938

Query: 876  DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLES 935
            D S  LK TE G+V +V++++N +G+ F  + +R  R P +GDKF+S HGQKG +G    
Sbjct: 939  DVSTPLKSTESGIVDQVLITTNSEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYR 998

Query: 936  QENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFAT 995
            QE+ PFT +GIVPDIVINPHA PSR T G L+E  L K    +G       +  ATPF  
Sbjct: 999  QEDMPFTAEGIVPDIVINPHAIPSRMTIGHLVECLLSKVATLIGN------EGDATPFTD 1052

Query: 996  PSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTG 1055
             +V++++  L + G+   G E ++ G TG  +++ +++GPT+YQRL HM +DK+  R  G
Sbjct: 1053 LTVESVSMFLKQKGYQSRGLEVMFHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARG 1112

Query: 1056 PVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKC--K 1113
            PV  LTRQPV  R R GG++FGEMERDC+I+HG A  L ERLF  SD+Y++H+C  C   
Sbjct: 1113 PVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLKERLFEASDAYRVHVCEICGLT 1172

Query: 1114 NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
             +AN+         K +   CR C +   + +  +PY AKLL QEL SM I  +  T
Sbjct: 1173 AIANL---------KKQSFECRACKNKTAVSQLYIPYAAKLLFQELQSMNIAARLYT 1220


>gi|168027816|ref|XP_001766425.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162682334|gb|EDQ68753.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1185

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/1196 (34%), Positives = 643/1196 (53%), Gaps = 106/1196 (8%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP--GYDPSKKGE-GEWRYASMRF 88
            ++F E GLV  Q++S++EFI+N +Q+  D   +  + P   ++P ++ E G+  Y  + F
Sbjct: 26   AYFEEKGLVRQQLDSFDEFIQNTMQEIVDESSDIEIRPESQHNPGRQAEIGDVTY-KINF 84

Query: 89   GQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGR 148
            GQ+ L KP     +G +   ++P+ ARL+N+TYS+ + V V             KF T +
Sbjct: 85   GQIYLSKPMMTEADG-ETATLWPKAARLRNLTYSAPLYVDVT------------KFVTRK 131

Query: 149  EQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM------KGVEKGDCDFDHGGYFIIKGAE 202
             +  ++E   ++ + + IG++P+M++S  C +         E G+C +D GGYFII G+E
Sbjct: 132  TEDGEEETEQEDLSKVYIGKVPIMLRSRYCTLFENSDKDLTELGECPYDQGGYFIINGSE 191

Query: 203  KVFVAQEQICLKRLWV-----SNSMGWTVAYKS-ENKRNR----LIVRLVDMSKFEDIKG 252
            KV +AQE++    ++V      N   +    +S    +NR    + VR++  +  +    
Sbjct: 192  KVLIAQEKMSTNHVYVFKKRQPNKYCYVAEVRSMAENQNRPPSGMFVRMLSRAGAKGGSS 251

Query: 253  GEKV-LSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKC 311
            G+ +  ++ ++ TEIPI ++F ALG  +DK+I+  I +   D +++ +L  S+ +A    
Sbjct: 252  GQYIRATLPYIRTEIPIIVVFRALGFVADKDILEHICYDFSDTAMMELLRPSLEEAF--- 308

Query: 312  DEFRKGRNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSL----HGTKQKARFLG 362
               +  + AL Y+ K  +G+T            +E +   + P +        +KA F G
Sbjct: 309  -VIQNQQVALDYIGK--RGSTVGVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFG 365

Query: 363  YMV-KCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYG 421
            Y++ + LL A  G    D+RD + NKRL+LAG LL    ++      K +   LQ+ +  
Sbjct: 366  YIIHRLLLCAIGGAE--DDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQKCVDN 423

Query: 422  DRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRR 481
             + +  + Y + A  +T+GL  + +TG W        R +G+   L R     TL  LRR
Sbjct: 424  GKEIN-LAYAVKAKTITSGLKYSLATGNWGQANTAGVR-AGVSQVLNRLTYASTLSHLRR 481

Query: 482  TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQ 540
                +   GK+   R  H SHWG +C   TP+G+ CGLVKNL +   ++  S   PI E 
Sbjct: 482  LNSPIGREGKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMAYITVGSAANPILEF 541

Query: 541  LFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKR 600
            L     E   + +   +    K+FV+G W+G+ ++    V  LR+ RR+ ++ T+V + R
Sbjct: 542  LEEWSTENFEEISPAVIPNSTKIFVNGLWVGIHRNPELLVRTLRQLRRQVDVNTEVGVVR 601

Query: 601  DELQSEVRIFMDAGRILRPLLVVE---------NMGKIKSLEGKNYTFQALLDHGIIELV 651
            D    E+R++ D GR  RPL +VE         ++  ++  E    ++  L+  G IE V
Sbjct: 602  DIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKQDVRALQMKESSENSWYDLVSKGFIEYV 661

Query: 652  GTEEEEDCCTAWGIKYLLK---DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARR 708
             TEEEE    +  I  L+    + E+     +THCE+  S +LG+   IIPF +H+ + R
Sbjct: 662  DTEEEETTMISMTIADLVNARNNPEEAYSDTYTHCEIHPSMILGVCGSIIPFPDHNQSPR 721

Query: 709  VLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPR 768
              YQS     QA+G   TN  +R+DTL++ L+YPQ+PL  T   + L      H   LP 
Sbjct: 722  NTYQS-AMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHL------HFRQLP- 773

Query: 769  PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRS 828
                 G NAIVA+  + GYNQEDS++MN++S++RG FRS   RSY+ E + K+  + +  
Sbjct: 774  ----AGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSIFYRSYRDE-EKKQGTLIKEE 828

Query: 829  SDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA----DSGA--------- 875
             +          + G  D LDDDG    G  +   D++IGK      D  A         
Sbjct: 829  FERPNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPLPQDDNASQAQRYTKR 888

Query: 876  DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLES 935
            D S  L+H+E GM+ +V+L++N DG  F  + +R +R P +GDKFSS HGQKG +G   +
Sbjct: 889  DQSTCLRHSESGMIDQVLLTTNADGLRFVKIRVRSIRIPQIGDKFSSRHGQKGTVGMTYT 948

Query: 936  QENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFAT 995
            QE+ P+T +GI PDI++NPHA PSR T GQL+E  +GK  A +GK      +  ATPF  
Sbjct: 949  QEDMPWTQEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK------EGDATPFTD 1002

Query: 996  PSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTG 1055
             +VD I++ LH+ G+   G E +Y+G TG  + + IF+GPT+YQRL HM +DK+  R  G
Sbjct: 1003 VTVDNISKALHKCGYQMRGFEVMYNGHTGRRLTAHIFLGPTYYQRLKHMVDDKIHSRGRG 1062

Query: 1056 PVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNV 1115
            PV  LTRQP   R R GG++FGEMERDC+IAHGAA  L ERLF  SD+Y++H+C  C  +
Sbjct: 1063 PVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGII 1122

Query: 1116 ANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
            A           K     CR C +  DIV+ ++PY  KLL QEL SM I  +  T+
Sbjct: 1123 AI-------ANLKKNTYECRGCKNNTDIVQVHIPYACKLLFQELMSMAIAPRMFTK 1171


>gi|448120161|ref|XP_004203908.1| Piso0_000931 [Millerozyma farinosa CBS 7064]
 gi|359384776|emb|CCE78311.1| Piso0_000931 [Millerozyma farinosa CBS 7064]
          Length = 1233

 Score =  656 bits (1693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/1265 (34%), Positives = 657/1265 (51%), Gaps = 137/1265 (10%)

Query: 3    SDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSF 62
            S +    DP    D  E      C     SFF E GLVS Q++S++EFI+  +Q+     
Sbjct: 2    SQEKSLEDPYLYDDDSESITPEDCWTVISSFFQEKGLVSQQLDSFDEFIETTIQELVWED 61

Query: 63   GETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYS 122
               I++     + + + E R   + FG++ + KP+   G+G   H MFP+ ARL+N+TYS
Sbjct: 62   SHLILDQPAQHTSEDDHENRRYEIAFGKIYISKPTQTEGDGTT-HPMFPQEARLRNLTYS 120

Query: 123  SRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDE-TTNIIIGRIPVMVKSDLCWMK 181
            S + V +  +V+   +   +  K    ++I++ V ++E  T + +G++P+M++S  C ++
Sbjct: 121  SPLYVDMTKRVF---KSDDNNRKDNELEWIEESVENEEPQTKVYLGKVPIMLRSKFCMLR 177

Query: 182  GV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE--- 231
            G+      E  +C +D GGYF+I G+EKV +AQE+     + V   +    +++ +E   
Sbjct: 178  GLGEHEFYELKECPYDMGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRS 237

Query: 232  --NKRNRLIVRLVDMSKFEDIKG--GEKV-LSVYFLSTEIPIWILFFALGVSSDKEIVNL 286
               K +RLI  +       D KG  G  +  ++ ++  +IPI I+F ALGV  D +I+  
Sbjct: 238  ALEKGSRLISSMQIKLYGRDDKGTSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEH 297

Query: 287  IDFTCEDCSILNILFAS------IHDADNKCDEF-RKG------RNALKYVDKLIKGTTF 333
            I +   D  +L +L         I + +   D   R+G         ++Y   +++    
Sbjct: 298  ICYDANDWQMLEMLKPCVEEGFVIQEREVALDFIGRRGVLGIRREKRIQYAKDILQKELL 357

Query: 334  PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAG 393
             P  + EE   T          +KA FLGYMV  LL     R++ D+RD F  KRL+LAG
Sbjct: 358  -PNITQEEGFET----------RKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAG 406

Query: 394  ELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHP 453
             LL    ++      K +   +QR +  D+        + +  +T+GL  + +TG W   
Sbjct: 407  PLLANLFRILFRKLTKDIYNYMQRCVENDKEFNST-LAVKSQTITDGLRYSLATGNWGEQ 465

Query: 454  FKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPD 513
             K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+
Sbjct: 466  KKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPE 525

Query: 514  GENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGV 572
            G+ CGLVKNL +   +S  +  EPI   L   GME L D    +     +VFV+G W+G 
Sbjct: 526  GQACGLVKNLSLMSCISVGTPSEPILYFLEEWGMEPLEDYVPSNSPEATRVFVNGVWVGT 585

Query: 573  CKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVV------ENM 626
             ++    V  +R  RRR ++  +V I RD  + E +IF DAGR+ RPL +V      E  
Sbjct: 586  HREPAHLVETMRNLRRRGDISPEVSIVRDIREREFKIFTDAGRVYRPLFIVDDDSDSETK 645

Query: 627  GKIK-------------------SLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKY 667
            G++K                     +  NY++ +LL+ G++E V  EEEE    A   + 
Sbjct: 646  GELKLKKEHVNKLLNAEYDEFSDEPDTLNYSWSSLLNDGVVEYVDAEEEETIMIAMTPED 705

Query: 668  L-----------LKDI----EDKKPIK-----------FTHCELDMSFLLGLSCGIIPFA 701
            L            KD+    ++  P K           FTHCE+  S +LG++  IIPF 
Sbjct: 706  LEASRSSLSETQQKDLQLEEQESDPAKRIKPTFSGSNTFTHCEIHPSMILGVAASIIPFP 765

Query: 702  NHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYG 761
            +H+ + R  YQS     QA+G   TN S+R+DT+++ L+YPQ+PL  T            
Sbjct: 766  DHNQSPRNTYQS-AMGKQAMGVFLTNYSVRMDTMANILYYPQKPLATTR----------A 814

Query: 762  HNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKE 821
              H+  R EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   RSY  +++ ++
Sbjct: 815  MEHLKFR-ELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSY-MDLEKRQ 872

Query: 822  MQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---------- 871
                  + +       ++ K G  + LDDDG    G  +   DI+IGK            
Sbjct: 873  GMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDTEELG 932

Query: 872  -----DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQ 926
                  +  D S  L+ TE G+V +V+L++N DG  F  V +R  + P +GDKF+S HGQ
Sbjct: 933  QRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQ 992

Query: 927  KGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGL 986
            KG +G     E+ PFT QG+VPD++INPHA PSR T   L+E  L K +++L     SGL
Sbjct: 993  KGTIGVTYRHEDMPFTAQGVVPDLIINPHAIPSRMTVAHLIECLLSK-VSSL-----SGL 1046

Query: 987  KRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSE 1046
            +  A+PF   +V+AI++ L   G+   G E +Y+G TG+ + + IF GPT+YQRL HM +
Sbjct: 1047 EGDASPFTDVTVEAISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVD 1106

Query: 1047 DKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQM 1106
            DK+  R  GPV  LTRQPV  R R GG++FGEMERDC+IAHGAA  L ERL   SD++++
Sbjct: 1107 DKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRV 1166

Query: 1107 HICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITL 1166
            H+C  C      +  V+   +K +   CR C +  +I + ++PY AKLL QEL +M I+ 
Sbjct: 1167 HVCGICG-----LMSVIANLKKNQFE-CRSCKNKTNIYQIHIPYAAKLLFQELMAMNISP 1220

Query: 1167 KFDTE 1171
            +  TE
Sbjct: 1221 RLYTE 1225


>gi|429329468|gb|AFZ81227.1| DNA-directed RNA polymerase II subunit, putative [Babesia equi]
          Length = 1219

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/1195 (35%), Positives = 630/1195 (52%), Gaps = 112/1195 (9%)

Query: 28   KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFG--ETIVEPGYDPSKKGEGEWRYAS 85
            K   SFF+ +GLV  QI S+N+FI   +Q+  D     E   +P Y P    E    Y  
Sbjct: 78   KVIGSFFSTHGLVHQQIESFNDFITYRMQEIIDEHPPIEIKPQPRYRPDDDLESNVTY-R 136

Query: 86   MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
            ++FGQ++L+KP     +G  +H ++P+ ARL+N+TY+S++ V ++ + Y +   T     
Sbjct: 137  LKFGQLSLNKPCVEEKDGVFKH-IWPQEARLRNLTYASQIYVDIEQETYLKDETTG---- 191

Query: 146  TGREQYIQKEVLSDETT--NIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFI 197
                     E L D+TT   I +GR+P+M+KS  CW KG+ +      G+C +D GGYFI
Sbjct: 192  --------AETLQDKTTYPRIPLGRMPMMLKSTYCWTKGLSEEDLADVGECPYDQGGYFI 243

Query: 198  IKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKRNRLIVRLVDM-------- 244
            + G E+V +AQE++    ++V      +   +    +S+ + ++ I     M        
Sbjct: 244  VNGGERVLIAQERMANNFIYVFKKKQPSKYSFVAEIRSQAEFSQGITPFSIMMKSSLGAP 303

Query: 245  -SKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFAS 303
             S+F+    G+ V ++ +L  +IP+ ILF ALG  +D++I+  I +  ED  +LN++ A+
Sbjct: 304  GSRFK--SHGQLVATIPYLRADIPVPILFRALGCVADRDILQRIVYDFEDKQMLNLMRAT 361

Query: 304  IHDADNKCDEFRKGRNALKYVDKLIKGTTF-PPGES----TEECMNTYLFPSLHGTK--- 355
            + +A +    +      L ++ K  +G T   P E+     ++ +  +L P + GT+   
Sbjct: 362  LEEASD----YVTQETCLDFIGK--RGPTVGAPLETRIQYAKDLLRQHLLPHV-GTEPGS 414

Query: 356  --QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAK 413
              +K  FLGYM+  LL +  GR   D+R+ F  KRL+LAG L+            K   +
Sbjct: 415  EGKKCYFLGYMIHRLLLSRLGRINEDDREHFGKKRLDLAGPLMASSFGTLFRKMAKDARR 474

Query: 414  ALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPL 473
             LQ+ +   R          A+ +T GL     TG W    +     +G+   L R    
Sbjct: 475  ILQQQIDCGRAFDVAGAIRSATTITQGLQYQLLTGNWGRDREGKIVRTGVSQVLNRLTFA 534

Query: 474  QTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-S 532
              L  LRR    +   GK+   R  H +HWG IC   TP+G+  GLVKNL +   +S  S
Sbjct: 535  SYLSHLRRLNTPLGREGKMAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMCYISVGS 594

Query: 533  ILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL 592
            +   I E L   GM+ L +     +  + K+F++G W+G   ++ S V  L   RRR ++
Sbjct: 595  VAATINEFLSEWGMDSLDEVPPEVVKDRVKIFINGTWVGCFDEADSLVRTLLELRRRGDI 654

Query: 593  PTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDH 645
             ++  I RD +  EV+IF DAGR +RPL +VEN          I  ++     +  L++ 
Sbjct: 655  SSETSIVRDIVSQEVKIFTDAGRAMRPLFIVENGNTLAINKEHIAMIDNNECNWDGLVES 714

Query: 646  GIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPI--KFTHCELDMSFLLGLSCGIIPFANH 703
            G+IE +  EEEE C     I   + D++        +THCE+  S +LG+   IIPF + 
Sbjct: 715  GVIEYIDCEEEEMCM----IGMFVDDLKANNTYCSTYTHCEIHPSMILGVCASIIPFPDQ 770

Query: 704  DHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLF--RTMISDCLGKPGYG 761
            + + R  YQS     QA+G   TN ++R+DTL H L+YPQ+PL   R+M           
Sbjct: 771  NQSPRNTYQS-AMGKQAMGVYATNFNLRMDTLCHILYYPQKPLVCTRSM----------- 818

Query: 762  HNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDN-K 820
                L   EL  G NAIVA+  + GYNQEDSL+MN++S++RG+FRS   R+Y +E     
Sbjct: 819  --EFLRFRELPAGINAIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSAFNRTYISEEKYVG 876

Query: 821  EMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA-----DSGA 875
               V+R       N   +  K G    LD DG    G+ +   DI+IG+ +     D   
Sbjct: 877  STIVERFERPGTANI--LGLKRGDYTKLDADGLVEPGSRVMGDDIIIGRTSTADEEDMRQ 934

Query: 876  DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLES 935
            D S  L+  E G+V  V++S N  G  F+ V +R VR P +GDKF+S HGQKG +G    
Sbjct: 935  DCSCCLRANENGVVDTVLVSVNAKGTKFAKVKVRSVRVPQIGDKFASRHGQKGTIGITYR 994

Query: 936  QENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFAT 995
             E+ PFT +GIVPDI++NPHA PSR T G L+E  +GK       G C G++  ATPF+ 
Sbjct: 995  TEDLPFTCEGIVPDIIMNPHAVPSRMTIGHLVECLIGK------VGACCGMEGDATPFSK 1048

Query: 996  PSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTG 1055
             +V  I E+L   G+++ G E  + G TG+M+ S IF+GPT+YQRL HM EDK+  R+ G
Sbjct: 1049 LTVQQIAERLFDCGYARHGNEAFHCGFTGQMITSRIFVGPTYYQRLKHMVEDKIHARSRG 1108

Query: 1056 PVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK-- 1113
            P   LTRQP   R R GG++FGEMERDC+I+HGAA  L ERLF  SD+Y++H+C  C   
Sbjct: 1109 PSTMLTRQPTEGRSREGGLRFGEMERDCMISHGAAKMLKERLFDQSDAYRIHVCDNCGLC 1168

Query: 1114 NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
             +A++ +             C  CD+  +I +  +PY  KLL QEL SM I  K 
Sbjct: 1169 CIADLNKSSFE---------CTACDNKTNISQVAIPYACKLLIQELMSMAIYPKL 1214


>gi|406604825|emb|CCH43700.1| DNA-directed RNA polymerase II subunit [Wickerhamomyces ciferrii]
          Length = 1241

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/1248 (34%), Positives = 651/1248 (52%), Gaps = 125/1248 (10%)

Query: 9    TDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVE 68
             DP +L    E+     C     SFF E GLVS Q++S++EFI   +Q+        I+E
Sbjct: 29   VDPYAL--ETEDITSEDCWTVISSFFREKGLVSQQLDSFDEFINTSIQELVWEDSTLILE 86

Query: 69   PGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVK 128
                   + +   R   ++FG++ L +P+    +G  +  MFP+ ARL+N+TY++ + V+
Sbjct: 87   QPAQHITEDDNINRKYEIKFGKIFLSRPTMTESDGTTQQ-MFPQEARLRNLTYAAPLFVE 145

Query: 129  VQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK--- 185
            +    Y     T+D      E   + +   ++   + IGR+P+M+KS  C ++ +E+   
Sbjct: 146  MDKITYETIDGTNDWTVIKDEVEDELDDDGNDNKKVYIGRVPIMLKSKYCLLRDLEEEEM 205

Query: 186  ---GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE-----NKRNR 236
                +C +D GGYF+I G+EKV +AQE+     + V   S    V++ +E      K +R
Sbjct: 206  YSLKECPYDMGGYFVINGSEKVLIAQERSAANIVQVFKKSAPSPVSHVAEIRSALEKGSR 265

Query: 237  LIVRLVDMSKFEDIKGGEKVL--SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDC 294
            LI  +       D KG  + +  ++ ++  +IPI I+F ALG+  D +I+  I +   D 
Sbjct: 266  LISSMQIKLYGRDDKGSGRTIKATLPYIKQDIPIVIVFRALGIVPDGDILEHICYDQNDW 325

Query: 295  SILNILFAS------IHDADNKCDEFRKGRNAL--------KYVDKLIKGTTFPPGESTE 340
             +  +L         I D +   D   +  NAL        +Y   +++   F P  + +
Sbjct: 326  QMFEMLKPCVEEGFVIQDREVALDFIGRRGNALGIRREKRIQYAKDILQ-KEFLPHITQQ 384

Query: 341  ECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLEREL 400
            E   +          +KA FLGYMV  LL     R+  D+RD F  KRL+LAG LL    
Sbjct: 385  EGFES----------RKAFFLGYMVNRLLLCALERKPQDDRDHFGKKRLDLAGPLLANLF 434

Query: 401  KVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERI 460
            ++      + + + +QR +  D     ++  + A+ +T+GL  + +TG W    K     
Sbjct: 435  RILFKKLTRDIYRYMQRSVETDTDFN-LKLAVKATTITSGLKYSLATGNWGEQKKAMSSR 493

Query: 461  SGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLV 520
            +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLV
Sbjct: 494  AGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLV 553

Query: 521  KNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSF 579
            KNL +   +S  S  +PI   L   GME L D   +      ++FV+G W G+ +D    
Sbjct: 554  KNLSLMSCISVGSGSDPIIYFLEEWGMEPLEDYLPHQAPDATRIFVNGVWHGIHRDPAKL 613

Query: 580  VSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN-------------- 625
            +S +R  RRR E+  +V I RD  + E ++F DAGR+ RPL VVE+              
Sbjct: 614  ISTMRNLRRRGEISPEVSIIRDIREKEFKVFTDAGRVYRPLFVVEDNEETGAKELALKRE 673

Query: 626  ---------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGI------KYLLK 670
                      G  + +E + + + +L+ +GI+E V  EEEE    A         KY  +
Sbjct: 674  HVQKIVDTEYGDYEEMEEEPFVWNSLVTNGIVEYVDAEEEETIMIAMSPEDLNPEKYGTQ 733

Query: 671  DIEDKKPIK------------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSS 718
            + +D  P K            FTHCE+  S +LG++  IIPF +H+ + R  YQS     
Sbjct: 734  NYDDPDPNKRLKPGTNKHAQTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQS-AMGK 792

Query: 719  QAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAI 778
            QA+G   TN S+R+DT+++ L+YPQ+PL  T              H+  R EL  GQNAI
Sbjct: 793  QAMGVFLTNYSVRMDTMANILYYPQKPLATTR----------AMEHLKFR-ELPAGQNAI 841

Query: 779  VAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKI 838
            VA+  + GYNQEDS++MN++S++RG+FRS   RSY  +     M V  +      +   +
Sbjct: 842  VAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKRVGMTVVEQFEKPNRS-NTL 900

Query: 839  QSKIGRVDSLDDDGFPFIGANLQSGDIVIGK----YADSGA-----------DHSIKLKH 883
            + K G  + LDDDG    G  +   DI+IGK     ADS             D S  L+ 
Sbjct: 901  RLKHGTYEKLDDDGLIAPGVRVSGEDIIIGKTTPIQADSEELGQRTVYHSKRDASTPLRS 960

Query: 884  TERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTI 943
            TE G+V +V++++N +G  F  V +R  + P +GDKF+S HGQKG +G    +E+ PFT 
Sbjct: 961  TENGIVDQVLITTNQEGLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTR 1020

Query: 944  QGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITE 1003
            +GIVPD++INPHA PSR T   L+E  L K ++AL     SGL+  A+PF   +VDAI++
Sbjct: 1021 EGIVPDLIINPHAIPSRMTVAHLIECLLSK-VSAL-----SGLEGDASPFTDVTVDAISK 1074

Query: 1004 QLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQ 1063
             L   G+   G E +Y+G TG+ + + IF GPT+YQRL HM +DK+  R  GPV  LTRQ
Sbjct: 1075 LLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPVQILTRQ 1134

Query: 1064 PVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVV 1123
            PV  R R GG++FGEMERDC+IAHGAAA + ERL   SD++++H+C  C  + +VI ++ 
Sbjct: 1135 PVEGRSRDGGLRFGEMERDCMIAHGAAAFMKERLMEASDAFRVHVCGVC-GLMSVIAKL- 1192

Query: 1124 GGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                K     CR C +  DI + ++PY AKLL QEL +M I  +  T+
Sbjct: 1193 ----KHNQFECRGCKNKIDIYQIHIPYAAKLLFQELMAMNIAPRLYTD 1236


>gi|95115819|gb|ABF56204.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. avenaria]
 gi|95115821|gb|ABF56205.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. avenaria]
          Length = 1262

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/1277 (34%), Positives = 645/1277 (50%), Gaps = 162/1277 (12%)

Query: 18   GEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPG--YDPSK 75
            G E     C     SFF+  GLVS Q++SY+EF +N +Q      G  I+E    YDP +
Sbjct: 17   GGEITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDE 76

Query: 76   KGEG--EWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQV 133
              +   + RY  ++FG+V L +P+   G+G     +FP  ARL+N+TYS  M   +  ++
Sbjct: 77   DSDPIIKRRY-EIKFGRVYLARPTHTEGDGTTVA-LFPHEARLRNLTYSGAMLADISNRI 134

Query: 134  YTQKR-------------VTSDKFKTGREQYIQKEV-LSDETTNIIIGRIPVMVKSDLCW 179
               K              VT+      + ++ +++V + +E+  + IG++PVM++S+LC 
Sbjct: 135  MVAKETQVVAEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCH 194

Query: 180  MKGVEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV----SNSMGWTVAYK 229
            ++           +C +D GGYF+I G+EKV +AQE+     + V      S+ WT   +
Sbjct: 195  LRNQSDEALFAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGSVPWTAEIR 254

Query: 230  SENKRNRLIVRLVDMSKFEDIKGGE----------KVLSVYFLSTEIPIWILFFALGVSS 279
            S  ++   ++   ++   E+  GG               + ++ TE+P+ I+F ALG+ S
Sbjct: 255  SAVEKGTRLISSFNIKWSENSLGGPGQGRRAPGPFAYAMLPYIKTEVPMAIVFRALGIVS 314

Query: 280  DKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDK--LIKGTTFPPGE 337
            D+EI++ I +   D  +L +L  SI +     D       AL ++ K    +GT     +
Sbjct: 315  DEEILSHIVYDRTDTQMLELLKPSIEEGAVIQDR----ETALDFIAKRGANQGTRDRRLK 370

Query: 338  STEECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAG 393
               + M     P +   +    +KA F GYM+  LLQ   GRR  D+RD F  KRL+LAG
Sbjct: 371  FARDIMQREFLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAG 430

Query: 394  ELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHP 453
             L+    ++      K + K LQR +    T   ++  + ASI+TNGL  + +TG W   
Sbjct: 431  PLVANLFRILFLKLTKDVFKYLQRCVESS-TDFNVQMAVKASIITNGLKYSLATGNWGDQ 489

Query: 454  FKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPD 513
             K     +G+   L R     TL  LRRT   V   GK+   R  H SHWG +C   TP+
Sbjct: 490  KKAASAKAGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPE 549

Query: 514  GENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGV 572
            G+ CGLVKNL +   VS  S   PI + +    M+ L +          KVFV+G W+GV
Sbjct: 550  GQACGLVKNLSLMCYVSVGSDASPIIDFMSQRNMQLLEEYDQNQNPEATKVFVNGVWVGV 609

Query: 573  CKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKS- 631
               +   V+ ++  RR   L  ++ + RD    E +IF DAGR++RPL VVEN     + 
Sbjct: 610  HSQAQQLVTVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENSPSKPNR 669

Query: 632  ------------------------------LEGKNYTFQALLDHGIIELVGTEEEEDCCT 661
                                          +    Y ++ L+  G+IE +  EEEE    
Sbjct: 670  NQLVFDRDISNRLVKEQLDHDTRAGWSDTDIADNTYGWKGLIQDGVIEYLDAEEEETAMI 729

Query: 662  AW---------GIKYLLKDIE----------------DKKPIKFTHCELDMSFLLGLSCG 696
             +         G+K  L   E                D +   +THCE+  + +LG+   
Sbjct: 730  TFSPEDLDEWRGMKMGLPTSERANLGKERLRRIKPKPDPRIHAYTHCEIHPAMILGICAS 789

Query: 697  IIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLG 756
            IIPF +H+ + R  YQS     QA+G   TN ++R++T+ + L+YPQ+PL  T   +   
Sbjct: 790  IIPFPDHNQSPRNTYQS-AMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSME--- 845

Query: 757  KPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAE 816
                     L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y   
Sbjct: 846  --------YLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTE- 896

Query: 817  VDNKEMQVKRRSSDDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKY 870
                  Q KR   + +  F K      ++ K G  D LDDDG    G  +   DI+IGK 
Sbjct: 897  ------QEKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKT 950

Query: 871  ADSGADH---------------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPC 915
            A   AD                S  L+ TE G+V +V+ ++N +G  F  V  R  + P 
Sbjct: 951  APIAADAQELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQ 1010

Query: 916  LGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGI 975
            +GDKF+S HGQKG +G    QE+ PFT +G+ PD+VINPHA PSR T   L+E  L K  
Sbjct: 1011 IGDKFASRHGQKGTIGITYRQEDMPFTSEGLTPDLVINPHAIPSRMTIAHLVECLLSK-- 1068

Query: 976  AALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGP 1035
                 G  +G +  ATPF   +VD I++ L +AG+ K G E +Y+G TG+ +R  +F+GP
Sbjct: 1069 ----VGAITGQEGDATPFTEVTVDEISDLLEQAGYQKRGFEIMYNGHTGKKMRVQVFLGP 1124

Query: 1036 TFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHE 1095
            T+YQRL HM +DK+  R  GP+  LTRQPV  R R GG++FGEMERDC+IAHGAAA L E
Sbjct: 1125 TYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKE 1184

Query: 1096 RLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPY-CRICDSGDDIVKANVPYGAKL 1154
            RLFT+SD+Y +H+C  C  ++ +           +G Y CR C +   I + ++PY AKL
Sbjct: 1185 RLFTVSDAYTVHVCDICGLMSPI-------ASIKKGMYECRPCHNKTRISQIHIPYAAKL 1237

Query: 1155 LCQELFSMGITLKFDTE 1171
            L QEL +M I  +  T+
Sbjct: 1238 LFQELLAMNIATRMFTD 1254


>gi|95115813|gb|ABF56201.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. avenaria]
 gi|95115815|gb|ABF56202.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. avenaria]
 gi|95115817|gb|ABF56203.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. avenaria]
 gi|95115823|gb|ABF56206.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. avenaria]
 gi|95115825|gb|ABF56207.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. avenaria]
          Length = 1262

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/1277 (34%), Positives = 645/1277 (50%), Gaps = 162/1277 (12%)

Query: 18   GEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPG--YDPSK 75
            G E     C     SFF+  GLVS Q++SY+EF +N +Q      G  I+E    YDP +
Sbjct: 17   GGEITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDE 76

Query: 76   KGEG--EWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQV 133
              +   + RY  ++FG+V L +P+   G+G     +FP  ARL+N+TYS  M   +  ++
Sbjct: 77   DSDPIIKRRY-EIKFGRVYLARPTHTEGDGTTVA-LFPHEARLRNLTYSGAMLADISNRI 134

Query: 134  YTQKR-------------VTSDKFKTGREQYIQKEV-LSDETTNIIIGRIPVMVKSDLCW 179
               K              VT+      + ++ +++V + +E+  + IG++PVM++S+LC 
Sbjct: 135  MVAKETQVVAEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCH 194

Query: 180  MKGVEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV----SNSMGWTVAYK 229
            ++           +C +D GGYF+I G+EKV +AQE+     + V      S+ WT   +
Sbjct: 195  LRNQSDEALFAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGSVPWTAEIR 254

Query: 230  SENKRNRLIVRLVDMSKFEDIKGGE----------KVLSVYFLSTEIPIWILFFALGVSS 279
            S  ++   ++   ++   E+  GG               + ++ TE+P+ I+F ALG+ S
Sbjct: 255  SAVEKGTRLISSFNIKWSENSLGGPGQGRRAPGPFAYAMLPYIKTEVPMAIVFRALGIVS 314

Query: 280  DKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDK--LIKGTTFPPGE 337
            D+EI++ I +   D  +L +L  SI +     D       AL ++ K    +GT     +
Sbjct: 315  DEEILSHIVYDRTDTQMLELLKPSIEEGAVIQDR----ETALDFIAKRGANQGTRDRRLK 370

Query: 338  STEECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAG 393
               + M     P +   +    +KA F GYM+  LLQ   GRR  D+RD F  KRL+LAG
Sbjct: 371  FARDIMQREFLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAG 430

Query: 394  ELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHP 453
             L+    ++      K + K LQR +    T   ++  + ASI+TNGL  + +TG W   
Sbjct: 431  PLVANLFRILFLKLTKDVFKYLQRCVESS-TDFNVQMAVKASIITNGLKYSLATGNWGDQ 489

Query: 454  FKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPD 513
             K     +G+   L R     TL  LRRT   V   GK+   R  H SHWG +C   TP+
Sbjct: 490  KKAASAKAGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPE 549

Query: 514  GENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGV 572
            G+ CGLVKNL +   VS  S   PI + +    M+ L +          KVFV+G W+GV
Sbjct: 550  GQACGLVKNLSLMCYVSVGSDASPIIDFMSQRNMQLLEEYDQNQNPEATKVFVNGVWVGV 609

Query: 573  CKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKS- 631
               +   V+ ++  RR   L  ++ + RD    E +IF DAGR++RPL VVEN     + 
Sbjct: 610  HSQAQQLVTVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENSPSKPNR 669

Query: 632  ------------------------------LEGKNYTFQALLDHGIIELVGTEEEEDCCT 661
                                          +    Y ++ L+  G+IE +  EEEE    
Sbjct: 670  NQLVFDRDISNRLVKEQLDHDTRAGWSDADIADNTYGWKGLIQDGVIEYLDAEEEETAMI 729

Query: 662  AW---------GIKYLLKDIE----------------DKKPIKFTHCELDMSFLLGLSCG 696
             +         G+K  L   E                D +   +THCE+  + +LG+   
Sbjct: 730  TFSPEDLDEWRGMKMGLPTSERANLGKERLRRIKPKPDPRIHAYTHCEIHPAMILGICAS 789

Query: 697  IIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLG 756
            IIPF +H+ + R  YQS     QA+G   TN ++R++T+ + L+YPQ+PL  T   +   
Sbjct: 790  IIPFPDHNQSPRNTYQS-AMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSME--- 845

Query: 757  KPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAE 816
                     L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y   
Sbjct: 846  --------YLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTE- 896

Query: 817  VDNKEMQVKRRSSDDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKY 870
                  Q KR   + +  F K      ++ K G  D LDDDG    G  +   DI+IGK 
Sbjct: 897  ------QEKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKT 950

Query: 871  ADSGADH---------------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPC 915
            A   AD                S  L+ TE G+V +V+ ++N +G  F  V  R  + P 
Sbjct: 951  APIAADAQELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQ 1010

Query: 916  LGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGI 975
            +GDKF+S HGQKG +G    QE+ PFT +G+ PD+VINPHA PSR T   L+E  L K  
Sbjct: 1011 IGDKFASRHGQKGTIGITYRQEDMPFTSEGLTPDLVINPHAIPSRMTIAHLVECLLSK-- 1068

Query: 976  AALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGP 1035
                 G  +G +  ATPF   +VD I++ L +AG+ K G E +Y+G TG+ +R  +F+GP
Sbjct: 1069 ----VGAITGQEGDATPFTEVTVDEISDLLEQAGYQKRGFEIMYNGHTGKKMRVQVFLGP 1124

Query: 1036 TFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHE 1095
            T+YQRL HM +DK+  R  GP+  LTRQPV  R R GG++FGEMERDC+IAHGAAA L E
Sbjct: 1125 TYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKE 1184

Query: 1096 RLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPY-CRICDSGDDIVKANVPYGAKL 1154
            RLFT+SD+Y +H+C  C  ++ +           +G Y CR C +   I + ++PY AKL
Sbjct: 1185 RLFTVSDAYTVHVCDICGLMSPI-------ASIKKGMYECRPCHNKTRISQIHIPYAAKL 1237

Query: 1155 LCQELFSMGITLKFDTE 1171
            L QEL +M I  +  T+
Sbjct: 1238 LFQELLAMNIATRMFTD 1254


>gi|452820468|gb|EME27510.1| DNA-directed RNA polymerase subunit [Galdieria sulphuraria]
          Length = 1184

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/1234 (34%), Positives = 636/1234 (51%), Gaps = 138/1234 (11%)

Query: 19   EEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIV--EPGYDPSKK 76
            EE  +        S+F E GLV  Q++S++EF+ N +Q+  DS  + ++  EP Y P ++
Sbjct: 4    EEITQEDAWTVISSYFEEKGLVRQQLDSFDEFVTNTMQEIVDSQPDLVLTAEPQYLPGQR 63

Query: 77   GEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQ 136
             E   +   + FGQ++L KP+F   + G+   ++P  ARL+N+TYSS +        Y  
Sbjct: 64   SEDLDKRYVVSFGQLSLSKPTF-TEDTGETRPLYPNQARLRNLTYSSAL--------YCD 114

Query: 137  KRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDF 190
              VT    ++G+E+  Q   +      + +GRIP+M+KS  C +  +E       G+C +
Sbjct: 115  VTVTEVNLESGKEETSQHPPI-----RVFLGRIPIMLKSQFCHLYNLEPWDLAELGECPY 169

Query: 191  DHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE--------NKRNRLIVRL 241
            D GGYF+I G+EKV +AQE++    ++V   S     +Y +E        N+   L+   
Sbjct: 170  DQGGYFVINGSEKVIIAQERMTSNHVFVFKRSQPSKYSYVAECRSAPDSGNRPPSLLQVK 229

Query: 242  VDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILF 301
            +     + I G    +S+ ++  +IP+ I+F ALG  +D+EI++ I +  +D  ++  L 
Sbjct: 230  LLRGGAKGISGQYIRVSMPYIKQDIPVIIVFRALGFENDREIMSHICYNFQDEELMTFLM 289

Query: 302  ASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSL---HG 353
             SI +A    D       AL Y+ K  +G T    +        E +     P +    G
Sbjct: 290  PSIEEAAVIQDHLV----ALDYIGK--RGNTIAVTKDKRIQYAREVLQKEFLPHIGIGEG 343

Query: 354  TK-QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMA 412
             + +K  FLGY++  LL    GRR+ D+RD + NKRL+LAG LL    + H+    K   
Sbjct: 344  CELKKGYFLGYVINRLLSTALGRREVDDRDHYGNKRLDLAGPLLGEMFRHHLRRVLKETR 403

Query: 413  KALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANP 472
              LQR+L   + +  ++  + +  +TNGL  A +TG W     RT    G+   L R   
Sbjct: 404  SILQRNLDTGKGLN-LQGAVKSRTITNGLKNALATGNWIR--GRT----GVSQVLNRLTY 456

Query: 473  LQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTS 532
              TL  LRR    +   GK+   R  H +HWG IC   TP+G+ CGL KNL +   +S  
Sbjct: 457  ASTLSHLRRLNSPIGREGKLAKPRQLHNTHWGMICPAETPEGQACGLTKNLALMAYISVG 516

Query: 533  ILE-PIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKE 591
                P+ E L    ME L + +   +    KVFV+G W+G+ ++    V  L+  RR+  
Sbjct: 517  TPSAPVIEFLEEWSMENLLEISPSVVPLATKVFVNGAWVGIHREPEDLVRTLKELRRQGT 576

Query: 592  LPTQVEIKRDELQSEVRIFMDAGRILRPLLVV---------------------------- 623
            +  +V I  D    E+RI+ D GR+ RPL +V                            
Sbjct: 577  IKEEVSIVMDHQFKELRIYTDPGRVCRPLFIVNPPPPPISFEDANEDTNVFGQRPPQTLA 636

Query: 624  ---ENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKF 680
                ++  +K  +G   +F  L+++G+IE V   EEE    A  IK L   IE    + +
Sbjct: 637  IKKSHIDMLKRTDGDRCSFSFLVENGLIEYVDVNEEETTMIAMNIKDL---IETDSEVVY 693

Query: 681  THCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLF 740
            THCE+  S +LG+   IIPF +H+ + R  YQ+     QA+G   TN  +R+DT++H L+
Sbjct: 694  THCEIHPSMILGVCGSIIPFPDHNQSPRNTYQA-AMGKQAMGIYATNYQLRMDTMAHVLY 752

Query: 741  YPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASL 800
            YPQ+PL  T   +          H+  R  L  G NAIVA+  + G+NQEDS++++++++
Sbjct: 753  YPQKPLVTTRAME----------HLQFR-SLPAGINAIVAIACYSGFNQEDSVILSQSAV 801

Query: 801  ERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANL 860
            +RG+FRS   R+++ E + + +   + + +       I +K G  D L++DG    G  +
Sbjct: 802  DRGLFRSLFFRTFRDE-ERRRLGGAQETFEVPNPKECIGTKRGAYDKLEEDGLVAEGTRV 860

Query: 861  QSGDIVIGKYADSG------------------------ADHSIKLKHTERGMVQKVVLSS 896
               DI++GK    G                         D S  ++ TE G+V KV+L++
Sbjct: 861  SGDDILVGKTCPLGRMAANGEEDETWKAYSQTLGGKTKKDASTSMRSTETGVVDKVMLAA 920

Query: 897  NDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHA 956
            N+ G  F  V +R VR P +GDKFSS HGQKG +G    QE+ PF + GIVPDI+INPHA
Sbjct: 921  NEAGARFVKVRIRSVRVPQVGDKFSSRHGQKGTVGITYGQEDLPFNVDGIVPDIIINPHA 980

Query: 957  FPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTE 1016
             PSR T GQL+E   GK  A  G+      +  ATPF   +VD I++QL   G+   G E
Sbjct: 981  IPSRMTIGQLIECLQGKVSAIAGR------EGDATPFTWVTVDEISQQLKTLGYQSRGWE 1034

Query: 1017 RLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKF 1076
             +Y+G TG  + + IFIGPT+YQRL HM +DK+  R  GPV  LTRQPV  R R GG++F
Sbjct: 1035 LMYNGFTGRPLEAHIFIGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRAREGGLRF 1094

Query: 1077 GEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRI 1136
            GEMERDC+I+HGAA  L ERL   SD+Y++H+C  C  +A           K     CR 
Sbjct: 1095 GEMERDCMISHGAAFFLKERLMDESDAYRIHVCNLCGLIAI-------ADLKRNTFECRS 1147

Query: 1137 CDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
            C +  +I +  +PY  KLL QEL +MGI  +  T
Sbjct: 1148 CRNKTEISQVFIPYACKLLFQELMAMGIAPRIVT 1181


>gi|448117721|ref|XP_004203325.1| Piso0_000931 [Millerozyma farinosa CBS 7064]
 gi|359384193|emb|CCE78897.1| Piso0_000931 [Millerozyma farinosa CBS 7064]
          Length = 1233

 Score =  655 bits (1690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/1265 (33%), Positives = 655/1265 (51%), Gaps = 137/1265 (10%)

Query: 3    SDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSF 62
            S +    DP    D  E      C     SFF E GLVS Q++S++EFI+  +Q+     
Sbjct: 2    SQEKSLEDPYLYDDDSESITPEDCWTVISSFFQEKGLVSQQLDSFDEFIETTIQELVWED 61

Query: 63   GETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYS 122
               I++     + + + E R   + FG++ + KP+   G+G   H MFP+ ARL+N+TYS
Sbjct: 62   SHLILDQPAQHTSEDDHENRRYEIAFGKIYISKPTQTEGDGTT-HPMFPQEARLRNLTYS 120

Query: 123  SRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDE-TTNIIIGRIPVMVKSDLCWMK 181
            S + V +  +V+   +   +  K    ++I++ V ++E  T + +G++P+M++S  C ++
Sbjct: 121  SPLYVDMTKRVF---KSDDNNRKDNELEWIEESVENEEPQTKVYLGKVPIMLRSKFCMLR 177

Query: 182  GV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE--- 231
            G+      E  +C +D GGYF+I G+EKV +AQE+     + V   +    +++ +E   
Sbjct: 178  GLGEHEFYELKECPYDMGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRS 237

Query: 232  --NKRNRLIVRLVDMSKFEDIKG--GEKV-LSVYFLSTEIPIWILFFALGVSSDKEIVNL 286
               K +RLI  +       D KG  G  +  ++ ++  +IPI I+F ALGV  D +I+  
Sbjct: 238  ALEKGSRLISSMQIKLYGRDDKGTSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEH 297

Query: 287  IDFTCEDCSILNILFAS------IHDADNKCDEF-RKG------RNALKYVDKLIKGTTF 333
            I +   D  +L +L         I + +   D   R+G         ++Y   +++    
Sbjct: 298  ICYDANDWQMLEMLKPCVEEGFVIQEREVALDFIGRRGVLGIRREKRIQYAKDILQKELL 357

Query: 334  PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAG 393
             P  + EE   T          +KA FLGYMV  LL     R++ D+RD F  KRL+LAG
Sbjct: 358  -PNITQEEGFET----------RKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAG 406

Query: 394  ELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHP 453
             LL    ++      K +   +QR +  D+        + +  +T+GL  + +TG W   
Sbjct: 407  PLLANLFRILFRKLTKDIYNYMQRCVENDKEFNST-LAVKSQTITDGLRYSLATGNWGEQ 465

Query: 454  FKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPD 513
             K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+
Sbjct: 466  KKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPE 525

Query: 514  GENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGV 572
            G+ CGLVKNL +   +S  +  EPI   L   GME L D    +     +VFV+G W+G 
Sbjct: 526  GQACGLVKNLSLMSCISVGTPSEPILYFLEEWGMEPLEDYVPSNSPEATRVFVNGVWVGT 585

Query: 573  CKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVV------ENM 626
             ++    V  +R  RRR ++  +V I RD  + E +IF DAGR+ RPL +V      E  
Sbjct: 586  HREPAHLVETMRNLRRRGDISPEVSIVRDIREREFKIFTDAGRVYRPLFIVDDDSDSETK 645

Query: 627  GKIK-------------------SLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGI-- 665
            G++K                     +  NY++ +LL+ G++E V  EEEE    A     
Sbjct: 646  GELKLKKEHVNKLLNAEYDEFSDEPDTLNYSWSSLLNDGVVEYVDAEEEETIMIAMTPED 705

Query: 666  -------------KYLLKDIEDKKPIK-----------FTHCELDMSFLLGLSCGIIPFA 701
                         K L  + ++  P K           FTHCE+  S +LG++  IIPF 
Sbjct: 706  LEASRSSLSETQQKNLQLEEQESDPAKRIRPTFSGSNTFTHCEIHPSMILGVAASIIPFP 765

Query: 702  NHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYG 761
            +H+ + R  YQS     QA+G   TN S+R+DT+++ L+YPQ+PL  T            
Sbjct: 766  DHNQSPRNTYQS-AMGKQAMGVFLTNYSVRMDTMANILYYPQKPLATTR----------A 814

Query: 762  HNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKE 821
              H+  R EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   RSY  +++ ++
Sbjct: 815  MEHLKFR-ELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSY-MDLEKRQ 872

Query: 822  MQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---------- 871
                  + +       ++ K G  + LDDDG    G  +   DI+IGK            
Sbjct: 873  GMKALETFEKPSRSDTLKLKHGTYEKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDTEELG 932

Query: 872  -----DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQ 926
                  +  D S  L+ TE G+V +V+L++N DG  F  V +R  + P +GDKF+S HGQ
Sbjct: 933  QRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKIPQIGDKFASRHGQ 992

Query: 927  KGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGL 986
            KG +G     E+ PFT QG+VPD++INPHA PSR T   L+E  L K +++L     SGL
Sbjct: 993  KGTIGVTYRHEDMPFTAQGVVPDLIINPHAIPSRMTVAHLIECLLSK-VSSL-----SGL 1046

Query: 987  KRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSE 1046
            +  A+PF   +V+A+++ L   G+   G E +Y+G TG+ + + IF GPT+YQRL HM +
Sbjct: 1047 EGDASPFTDVTVEAVSKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVD 1106

Query: 1047 DKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQM 1106
            DK+  R  GPV  LTRQPV  R R GG++FGEMERDC+IAHGAA  L ERL   SD++++
Sbjct: 1107 DKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRV 1166

Query: 1107 HICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITL 1166
            H+C  C      +  V+   +K +   CR C +  +I + ++PY AKLL QEL +M I+ 
Sbjct: 1167 HVCGICG-----LMSVIANLKKNQFE-CRSCKNKTNIYQIHIPYAAKLLFQELMAMNISP 1220

Query: 1167 KFDTE 1171
            +  TE
Sbjct: 1221 RLYTE 1225


>gi|95115799|gb|ABF56194.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
          Length = 1262

 Score =  655 bits (1690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/1269 (34%), Positives = 643/1269 (50%), Gaps = 162/1269 (12%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPG--YDPSKKGEG--EW 81
            C     SFF+  GLVS Q++SY+EF +N +Q      G  I+E    YDP +  +   + 
Sbjct: 25   CWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDSDPIIKR 84

Query: 82   RYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKR--- 138
            RY  ++FG+V L +P+   G+G     +FP  ARL+N+TYS  M   +  ++   K    
Sbjct: 85   RY-EIKFGRVYLARPTHTEGDGTTVA-LFPHEARLRNLTYSGAMLADISNRIMVAKETQV 142

Query: 139  ----------VTSDKFKTGREQYIQKEV-LSDETTNIIIGRIPVMVKSDLCWMKGVEK-- 185
                      VT+      + ++ +++V + +E+  + IG++PVM++S+LC ++      
Sbjct: 143  VVEGEDEDMEVTTTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQSDEA 202

Query: 186  ----GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV----SNSMGWTVAYKSENKRNRL 237
                 +C +D GGYF+I G+EKV +AQE+     + V      S+ WT   +S  ++   
Sbjct: 203  LFAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGSVPWTAEIRSAVEKGTR 262

Query: 238  IVRLVDMSKFEDIKGGE----------KVLSVYFLSTEIPIWILFFALGVSSDKEIVNLI 287
            ++   ++   E+  GG               + ++ TE+P+ I+F ALG+ SD+EI++ I
Sbjct: 263  LISSFNIKWSENSLGGSGQGKRAPGPFAYAMLPYIKTEVPMAIVFRALGIVSDEEILSHI 322

Query: 288  DFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDK--LIKGTTFPPGESTEECMNT 345
             +   D  +L +L  SI +     D       AL ++ K    +GT     +   + M  
Sbjct: 323  VYDRTDTQMLELLKPSIEEGAVIQDR----ETALDFIAKRGANQGTRDRRLKFARDIMQR 378

Query: 346  YLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELK 401
               P +   +    +KA F GYM+  LLQ   GRR  D+RD F  KRL+LAG L+    +
Sbjct: 379  EFLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANLFR 438

Query: 402  VHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERIS 461
            +      K + K LQR +    T   ++  + ASI+TNGL  + +TG W    K     +
Sbjct: 439  ILFLKLTKDVFKYLQRCVESS-TDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKA 497

Query: 462  GIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVK 521
            G+   L R     TL  LRRT   V   GK+   R  H SHWG +C   TP+G+ CGLVK
Sbjct: 498  GVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVK 557

Query: 522  NLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFV 580
            NL +   VS  S   PI + +    M+ L +          KVFV+G W+GV   +   V
Sbjct: 558  NLSLMCYVSVGSDATPIIDFMSQRNMQLLEEYDQNQNPEATKVFVNGVWVGVHSQAQQLV 617

Query: 581  SELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKS--------- 631
            S ++  RR   L  ++ + RD    E +IF DAGR++RPL VVEN     +         
Sbjct: 618  SVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENNPSKPNRNQLVFDRE 677

Query: 632  ----------------------LEGKNYTFQALLDHGIIELVGTEEEEDCCTAW------ 663
                                  +    Y ++ L+  G+IE +  EEEE     +      
Sbjct: 678  ISNRLVKEQLDHDTRAGWSDADIADNTYGWKGLIQDGVIEYLDAEEEETAMITFSPEDLD 737

Query: 664  ---GIKYLLKDIE----------------DKKPIKFTHCELDMSFLLGLSCGIIPFANHD 704
               G+K  L   E                D +   +THCE+  + +LG+   IIPF +H+
Sbjct: 738  EWRGMKMGLPTSERANLGKERLRRIKPKPDPRIHAYTHCEIHPAMILGICASIIPFPDHN 797

Query: 705  HARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNH 764
             + R  YQS     QA+G   TN ++R++T+ + L+YPQ+PL  T   +           
Sbjct: 798  QSPRNTYQS-AMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSME----------- 845

Query: 765  ILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQV 824
             L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y         Q 
Sbjct: 846  YLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTE-------QE 898

Query: 825  KRRSSDDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH- 877
            KR   + +  F K      ++ K G  D LDDDG    G  +   DI+IGK A   AD  
Sbjct: 899  KRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAADAQ 958

Query: 878  --------------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSM 923
                          S  L+ TE G+V +V+ ++N +G  F  V  R  + P +GDKF+S 
Sbjct: 959  ELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASR 1018

Query: 924  HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGIC 983
            HGQKG +G    QE+ PFT +G+ PD+VINPHA PSR T   L+E  L K       G  
Sbjct: 1019 HGQKGTIGITYRQEDMPFTSEGLTPDLVINPHAIPSRMTIAHLVECLLSK------VGAI 1072

Query: 984  SGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIH 1043
            +G +  ATPF   +VD I++ L +AG+ K G E +Y+G TG+ +R  +F+GPT+YQRL H
Sbjct: 1073 TGQEGDATPFTEVTVDEISDLLEQAGYQKRGFEIMYNGHTGKKMRVQVFLGPTYYQRLRH 1132

Query: 1044 MSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDS 1103
            M +DK+  R  GP+  LTRQPV  R R GG++FGEMERDC+IAHGAAA L ERLFT+SD+
Sbjct: 1133 MVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDA 1192

Query: 1104 YQMHICRKCKNVANVIQRVVGGGRKVRGPY-CRICDSGDDIVKANVPYGAKLLCQELFSM 1162
            Y +H+C  C  ++ +           +G Y CR C +   I + ++PY AKLL QEL +M
Sbjct: 1193 YTVHVCDICGLMSPI-------ASIKKGMYECRPCHNKTRISQIHIPYAAKLLFQELLAM 1245

Query: 1163 GITLKFDTE 1171
             I  +  T+
Sbjct: 1246 NIATRMFTD 1254


>gi|95115791|gb|ABF56190.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. tritici]
          Length = 1262

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/1269 (34%), Positives = 643/1269 (50%), Gaps = 162/1269 (12%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPG--YDPSKKGEG--EW 81
            C     SFF+  GLVS Q++SY+EF +N +Q      G  I+E    YDP +  +   + 
Sbjct: 25   CWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDSDPIIKR 84

Query: 82   RYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKR--- 138
            RY  ++FG+V L +P+   G+G     +FP  ARL+N+TYS  M   +  ++   K    
Sbjct: 85   RY-EIKFGRVYLARPTHTEGDGTTVA-LFPHEARLRNLTYSGAMLADISNRIMVAKETQV 142

Query: 139  ----------VTSDKFKTGREQYIQKEV-LSDETTNIIIGRIPVMVKSDLCWMKGVEK-- 185
                      VT+      + ++ +++V + +E+  + IG++PVM++S+LC ++      
Sbjct: 143  VAEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQSDEA 202

Query: 186  ----GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV----SNSMGWTVAYKSENKRNRL 237
                 +C +D GGYF+I G+EKV +AQE+     + V      S+ WT   +S  ++   
Sbjct: 203  LFAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGSVPWTAEIRSAVEKGTR 262

Query: 238  IVRLVDMSKFEDIKGGE----------KVLSVYFLSTEIPIWILFFALGVSSDKEIVNLI 287
            ++   ++   E+  GG               + ++ TE+P+ I+F ALG+ SD+EI++ I
Sbjct: 263  LISSFNIKWSENSLGGSGQGKRAPGPFAYAMLPYIKTEVPMAIVFRALGIVSDEEILSHI 322

Query: 288  DFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDK--LIKGTTFPPGESTEECMNT 345
             +   D  +L +L  SI +     D       AL ++ K    +GT     +   + M  
Sbjct: 323  VYDRTDTQMLELLKPSIEEGAVIQDR----ETALDFIAKRGANQGTRDRRLKFARDIMQR 378

Query: 346  YLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELK 401
               P +   +    +KA F GYM+  LLQ   GRR  D+RD F  KRL+LAG L+    +
Sbjct: 379  EFLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANLFR 438

Query: 402  VHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERIS 461
            +      K + K LQR +    T   ++  + ASI+TNGL  + +TG W    K     +
Sbjct: 439  ILFLKLTKDVFKYLQRCVESS-TDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKA 497

Query: 462  GIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVK 521
            G+   L R     TL  LRRT   V   GK+   R  H SHWG +C   TP+G+ CGLVK
Sbjct: 498  GVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVK 557

Query: 522  NLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFV 580
            NL +   VS  S   PI + +    M+ L +          KVFV+G W+GV   +   V
Sbjct: 558  NLSLMCYVSVGSDATPIIDFMSQRNMQLLEEYDQNQNPEATKVFVNGVWVGVHSQAQQLV 617

Query: 581  SELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKS--------- 631
            S ++  RR   L  ++ + RD    E +IF DAGR++RPL VVEN     +         
Sbjct: 618  SVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENNPTKPNRNQLVFDRE 677

Query: 632  ----------------------LEGKNYTFQALLDHGIIELVGTEEEEDCCTAW------ 663
                                  +    Y ++ L+  G+IE +  EEEE     +      
Sbjct: 678  ISNRLVKEQLDHDTRAGWSDADIADNTYGWKGLIQDGVIEYLDAEEEETAMITFSPEDLD 737

Query: 664  ---GIKYLLKDIE----------------DKKPIKFTHCELDMSFLLGLSCGIIPFANHD 704
               G+K  L   E                D +   +THCE+  + +LG+   IIPF +H+
Sbjct: 738  EWRGMKMGLPTSERANLGKERLRRIKPKPDPRIHAYTHCEIHPAMILGICASIIPFPDHN 797

Query: 705  HARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNH 764
             + R  YQS     QA+G   TN ++R++T+ + L+YPQ+PL  T   +           
Sbjct: 798  QSPRNTYQS-AMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSME----------- 845

Query: 765  ILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQV 824
             L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y         Q 
Sbjct: 846  YLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTE-------QE 898

Query: 825  KRRSSDDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH- 877
            KR   + +  F K      ++ K G  D LDDDG    G  +   DI+IGK A   AD  
Sbjct: 899  KRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAADAQ 958

Query: 878  --------------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSM 923
                          S  L+ TE G+V +V+ ++N +G  F  V  R  + P +GDKF+S 
Sbjct: 959  ELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASR 1018

Query: 924  HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGIC 983
            HGQKG +G    QE+ PFT +G+ PD+VINPHA PSR T   L+E  L K       G  
Sbjct: 1019 HGQKGTIGITYRQEDMPFTSEGLTPDLVINPHAIPSRMTIAHLVECLLSK------VGAI 1072

Query: 984  SGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIH 1043
            +G +  ATPF   +VD I++ L +AG+ K G E +Y+G TG+ +R  +F+GPT+YQRL H
Sbjct: 1073 TGQEGDATPFTEVTVDEISDLLEQAGYQKRGFEIMYNGHTGKKMRVQVFLGPTYYQRLRH 1132

Query: 1044 MSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDS 1103
            M +DK+  R  GP+  LTRQPV  R R GG++FGEMERDC+IAHGAAA L ERLFT+SD+
Sbjct: 1133 MVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDA 1192

Query: 1104 YQMHICRKCKNVANVIQRVVGGGRKVRGPY-CRICDSGDDIVKANVPYGAKLLCQELFSM 1162
            Y +H+C  C  ++ +           +G Y CR C +   I + ++PY AKLL QEL +M
Sbjct: 1193 YTVHVCDICGLMSPI-------ASIKKGMYECRPCHNKTRISQIHIPYAAKLLFQELLAM 1245

Query: 1163 GITLKFDTE 1171
             I  +  T+
Sbjct: 1246 NIATRMFTD 1254


>gi|95115795|gb|ABF56192.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. tritici]
 gi|95115797|gb|ABF56193.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. tritici]
          Length = 1262

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/1277 (33%), Positives = 645/1277 (50%), Gaps = 162/1277 (12%)

Query: 18   GEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPG--YDPSK 75
            G E     C     SFF+  GLVS Q++SY+EF +N +Q      G  I+E    YDP +
Sbjct: 17   GGEITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDE 76

Query: 76   KGEG--EWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQV 133
              +   + RY  ++FG+V L +P+   G+G     +FP  ARL+N+TYS  M   +  ++
Sbjct: 77   DSDPIIKRRY-EIKFGRVYLARPTHTEGDGTTVA-LFPHEARLRNLTYSGAMLADISNRI 134

Query: 134  YTQKR-------------VTSDKFKTGREQYIQKEV-LSDETTNIIIGRIPVMVKSDLCW 179
               K              VT+      + ++ +++V + +E+  + IG++PVM++S+LC 
Sbjct: 135  MVAKETQVVVEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCH 194

Query: 180  MKGVEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV----SNSMGWTVAYK 229
            ++           +C +D GGYF+I G+EKV +AQE+     + V      ++ WT   +
Sbjct: 195  LRNQSDEALFAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGNVPWTAEIR 254

Query: 230  SENKRNRLIVRLVDMSKFEDIKGGE----------KVLSVYFLSTEIPIWILFFALGVSS 279
            S  ++   ++   ++   ++  GG               + ++ TE+P+ I+F ALG+ S
Sbjct: 255  SAVEKGTRLISSFNIKWADNSLGGPGQGKRAPGPFAYAMLPYIKTEVPMAIVFRALGIVS 314

Query: 280  DKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDK--LIKGTTFPPGE 337
            D+EI++ I +   D  +L +L  SI +     D       AL ++ K    +GT     +
Sbjct: 315  DEEILSHIVYDRTDTQMLELLKPSIEEGAVIQDR----ETALDFIAKRGANQGTRDRRLK 370

Query: 338  STEECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAG 393
               + M     P +   +    +KA F GYM+  LLQ   GRR  D+RD F  KRL+LAG
Sbjct: 371  FARDIMQREFLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAG 430

Query: 394  ELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHP 453
             L+    ++      K + K LQR +    T   ++  + ASI+TNGL  + +TG W   
Sbjct: 431  PLVANLFRILFLKLTKDVFKYLQRCVESS-TDFNVQMAVKASIITNGLKYSLATGNWGDQ 489

Query: 454  FKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPD 513
             K     +G+   L R     TL  LRRT   V   GK+   R  H SHWG +C   TP+
Sbjct: 490  KKAASAKAGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPE 549

Query: 514  GENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGV 572
            G+ CGLVKNL +   VS  S   PI + +    M+ L +          KVFV+G W+GV
Sbjct: 550  GQACGLVKNLSLMCYVSVGSDATPIIDFMSQRNMQLLEEYDQNQNPEATKVFVNGVWVGV 609

Query: 573  CKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKS- 631
               +   VS ++  RR   L  ++ + RD    E +IF DAGR++RPL VVEN     + 
Sbjct: 610  HSQAQQLVSVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENNPSKPNR 669

Query: 632  ------------------------------LEGKNYTFQALLDHGIIELVGTEEEEDCCT 661
                                          +    Y ++ L+  G+IE +  EEEE    
Sbjct: 670  NQLVFDREISNRLVKEQLDSDTRAGWSDADIADNTYGWKGLIQDGVIEYLDAEEEETAMI 729

Query: 662  AW---------GIKYLLKDIE----------------DKKPIKFTHCELDMSFLLGLSCG 696
             +         G+K  L   E                D +   +THCE+  + +LG+   
Sbjct: 730  TFSPEDLDEWRGMKMGLPTTERANLGKERLRRIKPKPDPRIHAYTHCEIHPAMILGICAS 789

Query: 697  IIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLG 756
            IIPF +H+ + R  YQS     QA+G   TN ++R++T+ + L+YPQ+PL  T   +   
Sbjct: 790  IIPFPDHNQSPRNTYQS-AMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSME--- 845

Query: 757  KPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAE 816
                     L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y   
Sbjct: 846  --------YLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTE- 896

Query: 817  VDNKEMQVKRRSSDDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKY 870
                  Q KR   + +  F K      ++ K G  D LDDDG    G  +   DI+IGK 
Sbjct: 897  ------QEKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKT 950

Query: 871  ADSGADH---------------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPC 915
            A   AD                S  L+ TE G+V +V+ ++N +G  F  V  R  + P 
Sbjct: 951  APIAADAQELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQ 1010

Query: 916  LGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGI 975
            +GDKF+S HGQKG +G    QE+ PFT +G+ PD+VINPHA PSR T   L+E  L K  
Sbjct: 1011 IGDKFASRHGQKGTIGITYRQEDMPFTSEGLTPDLVINPHAIPSRMTIAHLVECLLSK-- 1068

Query: 976  AALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGP 1035
                 G  +G +  ATPF   +VD I++ L +AG+ K G E +Y+G TG+ +R  +F+GP
Sbjct: 1069 ----VGAITGQEGDATPFTEVTVDEISDLLEQAGYQKRGFEIMYNGHTGKKMRVQVFLGP 1124

Query: 1036 TFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHE 1095
            T+YQRL HM +DK+  R  GP+  LTRQPV  R R GG++FGEMERDC+IAHGAAA L E
Sbjct: 1125 TYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKE 1184

Query: 1096 RLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPY-CRICDSGDDIVKANVPYGAKL 1154
            RLFT+SD+Y +H+C  C  ++ +           +G Y CR C +   I + ++PY AKL
Sbjct: 1185 RLFTVSDAYTVHVCDICGLMSPI-------ASIKKGMYECRPCHNKTRISQIHIPYAAKL 1237

Query: 1155 LCQELFSMGITLKFDTE 1171
            L QEL +M I  +  T+
Sbjct: 1238 LFQELLAMNIATRMFTD 1254


>gi|70906409|gb|AAZ14928.1| DNA-dependent RNA polymerase II second largest subunit [Coprinellus
            disseminatus]
          Length = 1241

 Score =  654 bits (1687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/1245 (33%), Positives = 650/1245 (52%), Gaps = 123/1245 (9%)

Query: 8    FTDPT-SLCDLGEEFLKTF---CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFG 63
            + DP   + D G++F +     C     SFF++ GLV  Q++S++EF++N +Q+  D   
Sbjct: 30   YDDPNYGMDDDGDDFAEITQEDCWTVITSFFDQKGLVRQQLDSFDEFVQNTMQELVDENA 89

Query: 64   ETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSS 123
            + I++     +       R   ++FGQ+ L +P+    +G     +FP+ ARL+N+TYSS
Sbjct: 90   DLILDQADQHTGHDTDMTRRYEIKFGQIYLSRPTVTEADGS-VFPLFPQEARLRNLTYSS 148

Query: 124  RMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV 183
             + V+++ +V    R   D    G  Q+  ++  + E   I IG++P+M++S  C +  +
Sbjct: 149  PLYVEMKKRVLI-GREDPDGVP-GDIQWETEQEDTGEPEKIWIGKVPIMLRSSFCILHQL 206

Query: 184  ------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSEN 232
                  +  +C +D GGYFII G+EKV +AQE++    ++V      + + +    +S  
Sbjct: 207  RDNELYDLNECPYDSGGYFIINGSEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAV 266

Query: 233  KRNRLIVRLVDMSKF----EDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLID 288
            ++    +    +  F    E   G     ++ ++  +IPIW++F ALGV SD++I+  I 
Sbjct: 267  EKGGKTISQFQVKMFHRNQERSMGNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHIC 326

Query: 289  FTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTE-------E 341
            +  +D  +L +L   I D     D       AL ++    +GTT   G S E       E
Sbjct: 327  YDMQDAQMLEMLKPCIDDGFVIQDR----EVALDFIGN--RGTT--TGLSRERRIRYAQE 378

Query: 342  CMNTYLFPSLH----GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLE 397
             +   + P +        +KA F GYM+  LL A   RR+ D+RD F  KRL+LAG LL 
Sbjct: 379  ILQKEMLPHISMAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLA 438

Query: 398  RELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRT 457
               ++      K + + LQ+ +   +    +   +    +TNGL  + +TG W    K  
Sbjct: 439  GLFRMLFRKLTKDVYRYLQKCVETHKEFN-LTLAVKQQTITNGLKYSLATGNWGDQKKTM 497

Query: 458  ERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENC 517
               +G+   L R     TL  LRR    +   GK+   R  H +HWG +C   TP+G+ C
Sbjct: 498  SSKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQAC 557

Query: 518  GLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDS 576
            GLVKNL +   +S  S   P+ E L   G+E L ++A  S     KVFV+G W+GV +D 
Sbjct: 558  GLVKNLALMSCISVGSYSAPVIEFLEEWGLESLEENAHSSTPCT-KVFVNGVWMGVHRDP 616

Query: 577  LSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKSL---- 632
             + V  +++ RR+ ++  +V + RD  + E+R++ DAGR+ RPL +VEN   +       
Sbjct: 617  ANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLLQKKHIG 676

Query: 633  --------EGKNYTFQALLDHGIIELVGTEEEEDCCT-------------AWGIKYLLKD 671
                    +G+ Y ++ L+  G+IEL+  EEEE                 A G +    D
Sbjct: 677  WLNDGVDDQGEPYKWENLIKSGVIELLDAEEEETVMISMTPEDLDISRRQAEGEETPEND 736

Query: 672  IEDKKPIK---------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIG 722
             E     +         +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G
Sbjct: 737  AEFDPAARLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS-AMGKQAMG 795

Query: 723  FPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVN 782
               TN  +R+DT+++ L+YPQ+PL  T   +            L   EL  GQNAIVA+ 
Sbjct: 796  IYLTNFLVRMDTMANILYYPQKPLATTRSME-----------YLKFRELPAGQNAIVAIL 844

Query: 783  VHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKI 842
             + GYNQEDS++MN++S++RG+FRS + RSY  +++ K   ++    +       ++ K 
Sbjct: 845  CYSGYNQEDSVIMNQSSIDRGLFRSMYYRSY-MDLEKKSGALQLEEFEKPTRDTTLRMKH 903

Query: 843  GRVDSLDDDGFPFIGANLQSGDIVIGKYA---------------DSGADHSIKLKHTERG 887
            G  D ++DDGF   G N+   DI+IGK A                +  D S  LK TE G
Sbjct: 904  GTYDKIEDDGFIAPGTNVTGEDIIIGKTAPIPPDSEELGQRTRAHTRRDVSTPLKSTENG 963

Query: 888  MVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIV 947
            +V +V++++N +G+ F  V +R  R P +GDKF+S HGQKG +G    QE+ PFT +GIV
Sbjct: 964  IVDQVLITTNAEGQKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIV 1023

Query: 948  PDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHR 1007
            PD++INPHA PSR T G L+E  L K    +G       +  ATPF   +V+A++  L +
Sbjct: 1024 PDLIINPHAIPSRMTIGHLVECLLSKVATLIGN------EGDATPFTDLTVEAVSNFLRQ 1077

Query: 1008 AGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVAD 1067
             G+   G E +Y G TG  +++ +++GPT+YQRL HM +DK+  R  GPV  LTRQPV  
Sbjct: 1078 KGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEG 1137

Query: 1068 RKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKC--KNVANVIQRVVGG 1125
            R R GG++FGEMERDC+I+HG A  L ERLF  SD+Y++H+C  C    +AN+       
Sbjct: 1138 RSRDGGLRFGEMERDCMISHGIAGFLKERLFEASDAYRLHVCDICGLTAIANL------- 1190

Query: 1126 GRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
              K +   CR C +     +  +PY AKLL QEL SM I  +  T
Sbjct: 1191 --KKQSFECRACKNKTACSQLYIPYAAKLLFQELQSMNIAARLYT 1233


>gi|451846356|gb|EMD59666.1| hypothetical protein COCSADRAFT_252499 [Cochliobolus sativus ND90Pr]
          Length = 1262

 Score =  654 bits (1686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/1274 (33%), Positives = 649/1274 (50%), Gaps = 174/1274 (13%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPG--YDPSKKGEG--EW 81
            C     SFF+  GLVS Q++SY+EF +N +Q      G  I+E    Y+P +      + 
Sbjct: 27   CWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGSVILEQNTPYNPDEDDNPIIKR 86

Query: 82   RYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTS 141
            RY  ++FG+V L +P+   G+G     ++P  ARL+N+TYS  M   ++ ++   +    
Sbjct: 87   RY-EIKFGRVYLARPTHTEGDGTTVQ-LYPHEARLRNLTYSGAMLADIENRIMVAREGRD 144

Query: 142  DK----------FKTGREQ--YIQKEVLSDETT--NIIIGRIPVMVKSDLCWMKGVEKGD 187
             +          +  G  Q  + ++++  D+ T   + IG++PVM++S+LC ++     D
Sbjct: 145  PEGDEDEDMEGGYTGGASQIRWEREDMPMDDGTAARVFIGKLPVMLRSELCHLRAQSDAD 204

Query: 188  ------CDFDHGGYFIIKGAEKVFVAQEQICLKRLWV----SNSMGWTVAYKSENKRNRL 237
                  C +D GGYF+I G+EKV +AQE+     + V       + W    +S  ++   
Sbjct: 205  LFALNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGPIPWIAEIRSAVEKGTR 264

Query: 238  IVRLVDMSKFED--------IKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDF 289
            ++   ++   E+        I G     ++ ++  ++P+ I+F ALG+ SD+EI++ I +
Sbjct: 265  LISSFNIKWAENSLAGPGKRIPGPFAYATLPYIKADVPMAIVFRALGIVSDEEILSHIVY 324

Query: 290  TCEDCSILNILFASIHDADNKCDE-------FRKGRNA------LKYVDKLIKGTTFPPG 336
               D  +L +L  SI +     D         ++G N+      LK+   +++   F P 
Sbjct: 325  DRTDTQMLELLKPSIEEGSVVQDRETALDFIAKRGANSGTRDRRLKFARDIMQ-REFLPH 383

Query: 337  ESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL 396
             S +E  +T          +KA F GYM+  LLQ   GRR  D+RD F  KRL+LAG L+
Sbjct: 384  ISQKEGQDT----------RKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLI 433

Query: 397  ERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKR 456
                ++      K + K LQR +  ++    ++  + ASI+TNGL  + +TG W    K 
Sbjct: 434  ANLFRILFLKLTKDVYKYLQRCVENNQDFN-VQMAVKASIITNGLKYSLATGNWGDQKKA 492

Query: 457  TERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGEN 516
                +G+   L R     TL  LRRT   V   GK+   R  H SHWG +C   TP+G+ 
Sbjct: 493  ASAKAGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQA 552

Query: 517  CGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKD 575
            CGLVKNL +   VS  S   PI + +    M+ L +          KVFV+G W+GV  +
Sbjct: 553  CGLVKNLSLMCYVSVGSDASPIIDFMTQRNMQLLEEYDQNQNPDATKVFVNGVWVGVHSN 612

Query: 576  SLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------- 625
            +   V+ ++  RR   L  ++ + RD    E +IF DAGR++RPL VVEN          
Sbjct: 613  AQQLVTVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENDIRKPNRNHL 672

Query: 626  ------MGKIKS---------------LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWG 664
                    K+K+               +E   Y ++ L+  G++E +  EEEE     + 
Sbjct: 673  IFTKEISNKLKAEQQETSTRQGWSQEEVEQATYGWRGLIQDGVVEYLDAEEEETAMITFS 732

Query: 665  IKYL-------------------------LKDIEDKKPIKFTHCELDMSFLLGLSCGIIP 699
             + L                         LK   D +   +THCE+  + +LG+   IIP
Sbjct: 733  PEDLEEWREMKMGLPAAERSTEGKDRLRRLKPQPDPRIHAYTHCEIHPAMILGICASIIP 792

Query: 700  FANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPG 759
            F +H+ + R  YQS     QA+G   TN ++R++T+ + L+YPQ+PL  T   +      
Sbjct: 793  FPDHNQSPRNTYQS-AMGKQAMGVALTNFALRMETMMNVLYYPQKPLATTRSME------ 845

Query: 760  YGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDN 819
                  L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y      
Sbjct: 846  -----YLKFRELPAGQNAIVAIATYGGYNQEDSVIMNQSSIDRGLFRSLFYRAYTE---- 896

Query: 820  KEMQVKRRSSDDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADS 873
               Q KR   + +  F K      ++ K G  D LDDDG    G  +   DI+IGK A  
Sbjct: 897  ---QEKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPI 953

Query: 874  GADH---------------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGD 918
             AD                S  L+ TE G+V +V+ ++N +G  F  V  R  + P +GD
Sbjct: 954  AADAQELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGD 1013

Query: 919  KFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAL 978
            KF+S HGQKG +G    QE+ PFT +G+ PD++INPHA PSR T   L+E  L K     
Sbjct: 1014 KFASRHGQKGTIGITYRQEDMPFTREGVTPDLIINPHAIPSRMTIAHLVECLLSK----- 1068

Query: 979  GKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFY 1038
              G  +G +  ATPF   +VD I++ L  AG+ K G E +Y+G TG+ +R+ IF+GPT+Y
Sbjct: 1069 -VGAITGQEGDATPFTDVTVDQISQLLEDAGYQKRGFEIMYNGHTGKKLRTQIFLGPTYY 1127

Query: 1039 QRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLF 1098
            QRL HM +DK+  R  GP+  LTRQPV  R R GG++FGEMERDC+IAHGAAA L ERLF
Sbjct: 1128 QRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLF 1187

Query: 1099 TLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPY-CRICDSGDDIVKANVPYGAKLLCQ 1157
            T+SD+Y +H+C  C  ++ + Q         +G Y CR C +   I + ++PY AKLL Q
Sbjct: 1188 TVSDAYTVHVCDICGLMSPIAQ-------LKKGLYECRPCHNKTRISQIHIPYAAKLLFQ 1240

Query: 1158 ELFSMGITLKFDTE 1171
            EL +M I  +  T+
Sbjct: 1241 ELLAMNIATRMFTD 1254


>gi|95115789|gb|ABF56189.1| RNA polymerase II second largest subunit [Phaeosphaeria sp. S-93-48]
          Length = 1262

 Score =  654 bits (1686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/1269 (34%), Positives = 643/1269 (50%), Gaps = 162/1269 (12%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPG--YDPSKKGEG--EW 81
            C     SFF+  GLVS Q++SY+EF +N +Q      G  I+E    YDP +  +   + 
Sbjct: 25   CWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDEDSDPIIKR 84

Query: 82   RYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKR--- 138
            RY  ++FG+V L +P+   G+G     +FP  ARL+N+TYS  M   +  ++   K    
Sbjct: 85   RY-EIKFGRVYLARPTHTEGDGTTVA-LFPHEARLRNLTYSGAMLADISNRIMVAKETQV 142

Query: 139  ----------VTSDKFKTGREQYIQKEV-LSDETTNIIIGRIPVMVKSDLCWMKGVEK-- 185
                      VT+      + ++ +++V + +E+  + IG++PVM++S+LC ++      
Sbjct: 143  VAEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCHLRNQSDEA 202

Query: 186  ----GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV----SNSMGWTVAYKSENKRNRL 237
                 +C +D GGYF+I G+EKV +AQE+     + V      ++ WT   +S  ++   
Sbjct: 203  LFAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGNVPWTAEIRSAVEKGTR 262

Query: 238  IVRLVDMSKFEDIKGGE----------KVLSVYFLSTEIPIWILFFALGVSSDKEIVNLI 287
            ++   ++   E+  GG               + ++ TE+P+ I+F ALG+ SD+EI++ I
Sbjct: 263  LISSFNIKWAENSLGGPGQGKRAPGPFAYAMLPYIKTEVPMAIVFRALGIVSDEEILSHI 322

Query: 288  DFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDK--LIKGTTFPPGESTEECMNT 345
             +   D  +L +L  SI +     D       AL ++ K    +GT     +   + M  
Sbjct: 323  VYDRTDTQMLELLKPSIEEGAVIQDR----ETALDFIAKRGANQGTRDRRLKFARDIMQR 378

Query: 346  YLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELK 401
               P +   +    +KA F GYM+  LLQ   GRR  D+RD F  KRL+LAG L+    +
Sbjct: 379  EFLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVANLFR 438

Query: 402  VHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERIS 461
            +      K + K LQR +    T   ++  + ASI+TNGL  + +TG W    K     +
Sbjct: 439  ILFLKLTKDVFKYLQRCVESS-TDFNVQMAVKASIITNGLKYSLATGNWGDQKKAASAKA 497

Query: 462  GIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVK 521
            G+   L R     TL  LRRT   V   GK+   R  H SHWG +C   TP+G+ CGLVK
Sbjct: 498  GVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVK 557

Query: 522  NLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFV 580
            NL +   VS  S   PI + +    M+ L +          KVFV+G W+GV   +   V
Sbjct: 558  NLSLMCYVSVGSDATPIIDFMSQRNMQLLEEYDQNQNPEATKVFVNGVWVGVHSQAQQLV 617

Query: 581  SELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKS--------- 631
            S ++  RR   L  ++ + RD    E +IF DAGR++RPL VVEN     +         
Sbjct: 618  SVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENNPSKPNRNQLVFDRE 677

Query: 632  ----------------------LEGKNYTFQALLDHGIIELVGTEEEEDCCTAW------ 663
                                  +    Y ++ L+  G+IE +  EEEE     +      
Sbjct: 678  ISNRLVKEQLDHDTRAGWSDADIADNTYGWKGLIQDGVIEYLDAEEEETAMITFSPEDLD 737

Query: 664  ---GIKYLLKDIE----------------DKKPIKFTHCELDMSFLLGLSCGIIPFANHD 704
               G+K  L   E                D +   +THCE+  + +LG+   IIPF +H+
Sbjct: 738  EWRGMKMGLPTSERANLGKERLRRIKPKPDPRIHAYTHCEIHPAMILGICASIIPFPDHN 797

Query: 705  HARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNH 764
             + R  YQS     QA+G   TN ++R++T+ + L+YPQ+PL  T   +           
Sbjct: 798  QSPRKTYQS-AMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSME----------- 845

Query: 765  ILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQV 824
             L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y         Q 
Sbjct: 846  YLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTE-------QE 898

Query: 825  KRRSSDDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH- 877
            KR   + +  F K      ++ K G  D LDDDG    G  +   DI+IGK A   AD  
Sbjct: 899  KRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAADAQ 958

Query: 878  --------------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSM 923
                          S  L+ TE G+V +V+ ++N +G  F  V  R  + P +GDKF+S 
Sbjct: 959  ELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASR 1018

Query: 924  HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGIC 983
            HGQKG +G    QE+ PFT +G+ PD+VINPHA PSR T   L+E  L K       G  
Sbjct: 1019 HGQKGTIGITYRQEDMPFTSEGLTPDLVINPHAIPSRMTIAHLVECLLSK------VGAI 1072

Query: 984  SGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIH 1043
            +G +  ATPF   +VD I++ L +AG+ K G E +Y+G TG+ +R  +F+GPT+YQRL H
Sbjct: 1073 TGQEGDATPFTEVTVDEISDLLEQAGYQKRGFEIMYNGHTGKKMRVQVFLGPTYYQRLRH 1132

Query: 1044 MSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDS 1103
            M +DK+  R  GP+  LTRQPV  R R GG++FGEMERDC+IAHGAAA L ERLFT+SD+
Sbjct: 1133 MVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFTVSDA 1192

Query: 1104 YQMHICRKCKNVANVIQRVVGGGRKVRGPY-CRICDSGDDIVKANVPYGAKLLCQELFSM 1162
            Y +H+C  C  ++ +           +G Y CR C +   I + ++PY AKLL QEL +M
Sbjct: 1193 YTVHVCDICGLMSPI-------ASIKKGMYECRPCHNKTRISQIHIPYAAKLLFQELLAM 1245

Query: 1163 GITLKFDTE 1171
             I  +  T+
Sbjct: 1246 NIATRMFTD 1254


>gi|330922612|ref|XP_003299905.1| hypothetical protein PTT_11005 [Pyrenophora teres f. teres 0-1]
 gi|311326219|gb|EFQ92000.1| hypothetical protein PTT_11005 [Pyrenophora teres f. teres 0-1]
          Length = 1262

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1286 (33%), Positives = 649/1286 (50%), Gaps = 178/1286 (13%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPG--YDP 73
            D  +  L   C     SFF+  GLVS Q++SY+EF +N +Q      G  I+E    Y+P
Sbjct: 17   DEEDRVLPEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGSVILEQNQPYNP 76

Query: 74   SKKGEG--EWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQF 131
             ++     + RY  M+FG+V L +P+   G+G     ++P  ARL+N+TYS  M   ++ 
Sbjct: 77   DEEDNPIIKRRY-EMKFGRVYLARPTHTEGDGTTVQ-LYPHEARLRNLTYSGAMLADIEN 134

Query: 132  QVYTQKRVTSDKFK---------TGREQYI--QKEVLSDE---TTNIIIGRIPVMVKSDL 177
            +V   +     +           TG +  I  ++E +S +      + IG++PVM++S+L
Sbjct: 135  RVMVAREGRDPEADDDEEMEGGYTGGQNQIRWERENMSSDDGAAARVFIGKLPVMLRSEL 194

Query: 178  CWMKGVEKGD------CDFDHGGYFIIKGAEKVFVAQEQICLKRLWV----SNSMGWTVA 227
            C ++     D      C +D GGYF+I G+EKV +AQE+     + V       + W   
Sbjct: 195  CHLRAQSDADLFALNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGPIPWIAE 254

Query: 228  YKSENKRNRLIVRLVDMSKFED--------IKGGEKVLSVYFLSTEIPIWILFFALGVSS 279
             +S  ++   ++   ++   E+        I G     ++ ++  ++P+ I+F ALG+ S
Sbjct: 255  IRSAVEKGTRLISSFNIKWAENSLAGPGKRIPGPFAYATLPYIKADVPMAIVFRALGIVS 314

Query: 280  DKEIVNLIDFTCEDCSILNILFASIHDADNKCDE-------FRKGRNA------LKYVDK 326
            D+EI++ I F   D   L +L  SI +     D         ++G N+      LK+   
Sbjct: 315  DEEILSHIVFDRNDTQTLELLKPSIEEGSVVQDRETALDFIAKRGANSGTRDRRLKFARD 374

Query: 327  LIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRN 386
            +++   F P  S +E  +T          +KA F GYM+  LLQ   GRR  D+RD F  
Sbjct: 375  IMQ-REFLPHISQKEGQDT----------RKAYFFGYMIHRLLQCVLGRRDEDDRDHFGK 423

Query: 387  KRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFS 446
            KRL+LAG L+    ++      K + K LQR +  ++    ++  + AS +TNGL  + +
Sbjct: 424  KRLDLAGPLIANLFRILFLKLTKDVYKYLQRCVENNQDFN-VQMAVKASTITNGLKYSLA 482

Query: 447  TGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKI 506
            TG W    K     +G+   L R     TL  LRRT   V   GK+   R  H SHWG +
Sbjct: 483  TGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLV 542

Query: 507  CFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFV 565
            C   TP+G+ CGLVKNL +   VS  S   PI + +    M+ L +          KVFV
Sbjct: 543  CPAETPEGQACGLVKNLSLMCYVSVGSDATPIVDFMTQRNMQLLEEYDQNQSPDATKVFV 602

Query: 566  DGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN 625
            +G W+GV  ++   V+ ++  RR   L  ++ + RD    E +IF DAGR++RPL VVEN
Sbjct: 603  NGVWVGVHSNAQQLVTVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVEN 662

Query: 626  ----------------MGKIKS---------------LEGKNYTFQALLDHGIIELVGTE 654
                              K+KS               +E   Y ++ L+  G++E +  E
Sbjct: 663  DVRKPNRNHLIFTKEISNKLKSEQMEASQRQGWSEEEVEQATYGWRGLIQDGVVEYLDAE 722

Query: 655  EEEDCCTAWGIKYL-------------------------LKDIEDKKPIKFTHCELDMSF 689
            EEE     +  + L                         LK + D +   +THCE+  + 
Sbjct: 723  EEETAMITFSPEDLEEWREMKMGLPMTDHSLEGSQRLRRLKPLPDPRIHSYTHCEIHPAM 782

Query: 690  LLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRT 749
            +LG+   IIPF +H+ + R  YQS     QA+G   TN ++R++T+ + L+YPQ+PL  T
Sbjct: 783  ILGICASIIPFPDHNQSPRNTYQS-AMGKQAMGVALTNFALRMETMMNVLYYPQKPLATT 841

Query: 750  MISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEH 809
               +            L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS  
Sbjct: 842  RSME-----------YLKFRELPAGQNAIVAIATYGGYNQEDSVIMNQSSIDRGLFRSLF 890

Query: 810  IRSYKAEVDNKEMQVKRRSSDDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSG 863
             R+Y         Q KR   + +  F K      ++ K G  D LDDDG    G  +   
Sbjct: 891  YRAYTE-------QEKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGD 943

Query: 864  DIVIGKYADSGADH---------------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSL 908
            DI+IGK A    D                S  L+ TE G+V +V+ ++N +G  F  V  
Sbjct: 944  DIIIGKTAPIATDAAELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRT 1003

Query: 909  RQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLE 968
            R  + P +GDKF+S HGQKG +G    QE+ PF+ +G+ PD++INPHA PSR T   L+E
Sbjct: 1004 RTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFSREGLTPDLIINPHAIPSRMTIAHLVE 1063

Query: 969  AALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVR 1028
              L K       G  +G +  ATPF   +VD +++ L  AG+ K G E +Y+G TG+ +R
Sbjct: 1064 CLLSK------VGAITGQEGDATPFTDVTVDQVSQLLENAGYQKRGFEIMYNGHTGKKMR 1117

Query: 1029 SLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG 1088
            + IF+GPT+YQRL HM +DK+  R  GP+  LTRQPV  R R GG++FGEMERDC+IAHG
Sbjct: 1118 TQIFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHG 1177

Query: 1089 AAANLHERLFTLSDSYQMHICRKC---KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVK 1145
            AAA L ERLFT+SD+Y +H+C  C     +AN+ + +           CR C +   I +
Sbjct: 1178 AAAFLKERLFTVSDAYTVHVCDICGLMSPIANLKKNLY---------ECRPCHNKTRISQ 1228

Query: 1146 ANVPYGAKLLCQELFSMGITLKFDTE 1171
             ++PY AKLL QEL +M I  +  T+
Sbjct: 1229 IHIPYAAKLLFQELLAMNIATRMFTD 1254


>gi|156084492|ref|XP_001609729.1| DNA-directed RNA polymerase, beta subunit family protein [Babesia
            bovis]
 gi|154796981|gb|EDO06161.1| DNA-directed RNA polymerase, beta subunit family protein [Babesia
            bovis]
          Length = 1207

 Score =  653 bits (1684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/1223 (35%), Positives = 632/1223 (51%), Gaps = 115/1223 (9%)

Query: 5    DNGFTDPTSLCDLGEEFLKTFCR----KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFD 60
            DN  T  T++ + G+  L  F      K   SFFN +GLV  QI S+N+F+   +Q+  D
Sbjct: 36   DNDITKQTNVINYGKNELDAFTDEDSWKVIGSFFNTHGLVHQQIESFNDFVTYRMQETID 95

Query: 61   SFG--ETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQN 118
                 E   +P Y P  + E    Y  ++FGQ++L+KP      G  +H ++P+ ARL+N
Sbjct: 96   QHPPIEITPQPQYHPEDERENNIVY-KLKFGQLSLNKPCVEEMAGVLKH-IWPQEARLRN 153

Query: 119  MTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETT--NIIIGRIPVMVKSD 176
            +TYSS++ V ++ + Y             R++    E L +  T   I +GRIP+M+KS 
Sbjct: 154  LTYSSQIYVDIEQKTYL------------RDENTNTETLQETITYPRIELGRIPMMLKSA 201

Query: 177  LCWMKGVEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWT 225
             CW K + +      G+C FD GGYFI+ G E+V + QE++    +++      +     
Sbjct: 202  YCWTKDISEDDLADVGECPFDEGGYFIVNGGERVLIGQERMANNYIYIFKKKQPSKYSLV 261

Query: 226  VAYKSENKRNRLIVRL-VDMSKFEDIKG------GEKVLSVYFLSTEIPIWILFFALGVS 278
               +S+ + ++      + M     I G      G+ V S+ +L ++IPI ILF ALG  
Sbjct: 262  AEIRSQPEFSQGTTPFSIMMKSTSGIAGNRFKSHGQLVGSIPYLKSDIPIAILFRALGCV 321

Query: 279  SDKEIVNLIDFTCEDCSILNILFASIHD-ADNKCDEFRKGRNALKYVDKLIKGTTF-PPG 336
            +D++I+  I +  ED  +L ++  S+ + AD    E       L ++ K  +G T   P 
Sbjct: 322  ADRDILQRIVYDFEDKQMLTLMRPSLEETADYSTQEM-----CLDFIGK--RGPTVGAPL 374

Query: 337  ES----TEECMNTYLFPSLHGTK-----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNK 387
            E+     ++ +  +  P + GT+     +K  FLGYMV  LL +  GR   D+RD F  K
Sbjct: 375  ETRVQYAKDLLRQHFLPHV-GTEPGCESRKCYFLGYMVHRLLLSRLGRIPEDDRDHFGKK 433

Query: 388  RLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFST 447
            RL+LAG L+            K   + LQ+ +   R          A+ +T+GL     T
Sbjct: 434  RLDLAGSLMASSFGTLFRKMVKDTKRILQQQIDSGREFDVAGAVRSATQITHGLQYQLLT 493

Query: 448  GAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKIC 507
            G W          +G+   L R      L  LRR    +   GK+   R  H +HWG IC
Sbjct: 494  GNWGRDRDGKVVRTGVSQVLNRLTFASYLSHLRRLNTPLGREGKIAKPRQLHNTHWGMIC 553

Query: 508  FLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVD 566
               TP+G+  GLVKNL +   +S  +    I E L   GM+ L +     +  + K+F++
Sbjct: 554  PAETPEGQAVGLVKNLALMCFISVGTAASTINEFLCEWGMDSLDEVPPEVIKDRIKIFIN 613

Query: 567  GDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENM 626
            G W+G   ++ S V  L   RRR  +  +  I  D +  EV+IF DAGR +RPLL+VEN 
Sbjct: 614  GTWVGCFDEAESLVKTLLELRRRGNIAAETSIVCDIVSQEVKIFTDAGRAMRPLLIVENG 673

Query: 627  GK-------IKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPI- 678
                     I  L+     +  L++ G++E V  EEEE C     I    +D+++     
Sbjct: 674  NTLAITKTDIARLDNNECNWDGLIESGVVEYVDCEEEEMCM----IAMFAEDLKNNSTYC 729

Query: 679  -KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSH 737
              +THCE+  S +LG+   IIPF + + + R  YQS     QA+G   TN ++R+D LSH
Sbjct: 730  NTYTHCEIHPSMILGVCASIIPFPDQNQSPRNTYQS-AMGKQAMGVYATNFNLRMDPLSH 788

Query: 738  QLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNR 797
             L+YPQ+PL  T   +            L   EL  G NAIVA+  + GYNQEDSL+MN+
Sbjct: 789  LLYYPQKPLVCTRSME-----------FLRFRELPAGINAIVAIMCYTGYNQEDSLIMNQ 837

Query: 798  ASLERGMFRSEHIRSYKAEVDNKEMQVKRR--SSDDMVNFGKIQSKIGRVDSLDDDGFPF 855
            +S++RG+FRS   R+Y +E  +    V  R    +     G    K G    LD DG   
Sbjct: 838  SSIDRGLFRSAFNRTYVSEEKHVGSTVVERFERPNPATCVGL---KRGDYTKLDADGLVQ 894

Query: 856  IGANLQSGDIVIGKYADSG--------ADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVS 907
             G+ +   D++IG+ +            D S  L+ +E G+V  V++SSN  G  F+ V 
Sbjct: 895  PGSRVLGDDVIIGRTSACNDEEDENLRQDCSCCLRTSENGVVDTVLISSNAKGSRFAKVK 954

Query: 908  LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLL 967
            +R +R P +GDKF+S HGQKG +G     E+ PFT +GIVPDI++NPHA PSR T G L+
Sbjct: 955  VRSIRVPQIGDKFASRHGQKGTIGMTYRTEDLPFTCEGIVPDIIMNPHAVPSRMTIGHLV 1014

Query: 968  EAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMV 1027
            E  +GK       G C G++  ATPF+  +V  + E+L   G+ K G E L+ G TGEM+
Sbjct: 1015 ECLVGK------VGACCGMEGDATPFSKLTVQHVAERLFECGYGKHGNEALHCGFTGEMI 1068

Query: 1028 RSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAH 1087
             S IFIGPT+YQRL HM EDK+  R  GPV  LTRQP   R R GG++FGEMERDC+I+H
Sbjct: 1069 VSKIFIGPTYYQRLKHMVEDKIHARARGPVTMLTRQPTEGRSRDGGLRFGEMERDCMISH 1128

Query: 1088 GAAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVK 1145
            GAA  L ERLF  SD++++H+C +C    VA++ +             C  CD+  +I +
Sbjct: 1129 GAAKMLKERLFDQSDAFRIHVCDRCGLCCVADLNRNNF---------ECTACDNKTNISQ 1179

Query: 1146 ANVPYGAKLLCQELFSMGITLKF 1168
              +PY  KLL QEL +M I  K 
Sbjct: 1180 VTIPYACKLLIQELMAMAIYPKL 1202


>gi|392597726|gb|EIW87048.1| DNA-dependent RNA polymerase II second largest subunit [Coniophora
            puteana RWD-64-598 SS2]
          Length = 1228

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1229 (33%), Positives = 646/1229 (52%), Gaps = 128/1229 (10%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYAS 85
            C     SFF++ GLV  Q++S++EF++N +Q+  D   + I++     +       R   
Sbjct: 34   CWTVISSFFDQKGLVRQQLDSFDEFVQNTMQELVDENADLILDQADQHTGHETDMTRRYE 93

Query: 86   MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
            + FGQ+ L +P+    +G     +FP+ ARL+N+TYS+ + + ++ +V T +    D   
Sbjct: 94   IHFGQIYLSRPTVTEADGS-VVPVFPQEARLRNLTYSAPLYIDMKKRVLTGR---EDPDM 149

Query: 146  TGREQYIQKEVLSD--ETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFI 197
             G   +I ++  S+  E T + IG++P+M++S  C ++ ++  D      C +D GGYFI
Sbjct: 150  PGEVTWIPEDPDSENQEGTKVWIGKVPIMLRSTFCILRELQDQDLYDLNECPYDSGGYFI 209

Query: 198  IKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSENKR---------NRLIVRLVDMSKF 247
            I G+EKV +AQE++    ++V + +    +++ +E +          ++  V++   S+ 
Sbjct: 210  INGSEKVLIAQERMATNHVYVFAKAQPSPISFLAEIRSAVEKGGKTISQFQVKMFHRSQ- 268

Query: 248  EDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA 307
            E   G     ++ ++  +IPIW++F ALGV SD++I+  I +  +D  +L +L   I D 
Sbjct: 269  ERSLGNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDSQMLEMLKPCIDDG 328

Query: 308  DNKCDEFRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLHGTK----Q 356
                D       AL ++    +GTT   G S E       E +   + P +  ++    +
Sbjct: 329  FVIQDR----EVALDFIGN--RGTT--TGLSRERRIRYAQEILQKEMLPHVSMSEGSESK 380

Query: 357  KARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQ 416
            KA F GYM+  LL A   RR+ D+RD F  KRL+LAG LL    ++      + + + LQ
Sbjct: 381  KAYFFGYMIHRLLLAAMERRELDDRDHFGKKRLDLAGPLLANLFRMLFKKLTRDVYRYLQ 440

Query: 417  RDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTL 476
            + +   +    I   +    +TNGL  + +TG W    K     +G+   L R     TL
Sbjct: 441  KCVETHKEFN-ISLAVKHQTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTL 499

Query: 477  VDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILE 535
              LRR    +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  S   
Sbjct: 500  SHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSFSA 559

Query: 536  PIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQ 595
            P+ E L   G+E L ++A +S     KVFV+G W+GV +D  + V  +++ RR+ ++  +
Sbjct: 560  PVIEFLEEWGLESLEENA-HSSAACTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPE 618

Query: 596  VEIKRDELQSEVRIFMDAGRILRPLLVVE--------------NMGKIKSLEGKNYTFQA 641
            V + RD  + E+R++ DAGR+ RPL +VE              N G       + + +  
Sbjct: 619  VSVVRDIRERELRLYTDAGRVCRPLFIVEDQQLLLQKKHIKWLNQGYRDDDPTEEFKWDQ 678

Query: 642  LLDHGIIELVGTEEEEDCCTAW-------------GIKYLLKDIEDKKPIK--------- 679
            L+  G+IEL+  EEEE    A              GI     D ED  P           
Sbjct: 679  LVKGGVIELLDAEEEETVMIAMTPEDLENSRLQSAGIDTRQSD-EDYDPAARLKSGINAH 737

Query: 680  -FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQ 738
             +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DT+++ 
Sbjct: 738  TWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS-AMGKQAMGIYLTNFLVRMDTMANI 796

Query: 739  LFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRA 798
            L+YPQ+PL  T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++
Sbjct: 797  LYYPQKPLATTRSME-----------YLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQS 845

Query: 799  SLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGA 858
            S++RG+FRS + RSY  +++ K    +    +       ++ K G  D ++DDG    G 
Sbjct: 846  SIDRGLFRSIYYRSY-MDLEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKIEDDGLIAPGT 904

Query: 859  NLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNF 903
             +   DI+IGK A                +  D S  LK TE G+V +V++++N +G+ F
Sbjct: 905  GVSGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKF 964

Query: 904  SVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTP 963
              V +R  R P +GDKF+S HGQKG +G    QE+ PFT +GIVPDI+INPHA PSR T 
Sbjct: 965  VKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTI 1024

Query: 964  GQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRT 1023
            G L+E  L K    +G       +  ATPF   +V++++  L + G+   G E +Y G T
Sbjct: 1025 GHLVECLLSKVATLIGN------EGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHT 1078

Query: 1024 GEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDC 1083
            G  +++ +++GPT+YQRL HM +DK+  R  GPV  LTRQPV  R R GG++FGEMERDC
Sbjct: 1079 GRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDC 1138

Query: 1084 LIAHGAAANLHERLFTLSDSYQMHICRKC--KNVANVIQRVVGGGRKVRGPYCRICDSGD 1141
            +I+HG AA L ERLF  SD+Y++H+C  C    +AN+ ++            CR C +  
Sbjct: 1139 MISHGVAAFLKERLFEASDAYRLHVCDICGLTAIANLKKQTFE---------CRACKNKT 1189

Query: 1142 DIVKANVPYGAKLLCQELFSMGITLKFDT 1170
               +  +PY AKLL QEL SM I  +  T
Sbjct: 1190 ACSQLYIPYAAKLLFQELQSMNIAARLYT 1218


>gi|336376994|gb|EGO05329.1| hypothetical protein SERLA73DRAFT_101102 [Serpula lacrymans var.
            lacrymans S7.3]
 gi|336390144|gb|EGO31287.1| DNA-directed RNA polymerase II, subunit 2 [Serpula lacrymans var.
            lacrymans S7.9]
          Length = 1209

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1231 (33%), Positives = 642/1231 (52%), Gaps = 133/1231 (10%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYAS 85
            C     SFF + GLV  Q++S++EF++N +Q+  D   + I++     +       R   
Sbjct: 16   CWTVISSFFEQKGLVRQQLDSFDEFVQNTMQELVDENADLILDQADQHTGHESDMTRRYE 75

Query: 86   MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
            ++FGQ+ L +P+    +G     +FP+ ARL+N+TYS+ + ++++ +V     +      
Sbjct: 76   IKFGQIYLSRPTVTEADGSVV-PVFPQEARLRNLTYSAPLYIEMKKRVL----IGHSDPN 130

Query: 146  TGREQYI---QKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYF 196
             G+   +   + E   ++TT + IG++P+M++S  C ++G++  D      C +D GGYF
Sbjct: 131  GGQGDILWDAEHEESPEDTTKVWIGKVPIMLRSTFCILRGLQDQDLYDLNECPYDSGGYF 190

Query: 197  IIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKRNRLIVRLVDMSKF---- 247
            II G+EKV +AQE++    ++V      + + +    +S  ++    +    +  F    
Sbjct: 191  IINGSEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRNQ 250

Query: 248  EDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA 307
            E   G     ++ ++  +IPIW++F ALGV SD++I+  I +  +D  +L +L   I D 
Sbjct: 251  ERSLGNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDG 310

Query: 308  DNKCDEFRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLH----GTKQ 356
                D       AL ++    +GTT   G S E       E +   + P +        +
Sbjct: 311  FVIQDR----EVALDFIGN--RGTT--TGLSRERRIRYAQEILQKEMLPHVSMAEGSESK 362

Query: 357  KARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQ 416
            KA F GYM+  LL A   RR+ D+RD F  KRL+LAG LL    ++      + + + LQ
Sbjct: 363  KAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTRDVYRYLQ 422

Query: 417  RDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTL 476
            + +   +    +   +    +TNGL  + +TG W    K     +G+   L R     TL
Sbjct: 423  KCVETHKEFN-LSLAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTL 481

Query: 477  VDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILE 535
              LRR    +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  S   
Sbjct: 482  SHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSA 541

Query: 536  PIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQ 595
            P+ E L   G+E L ++A  S     KVFV+G W+GV +D  + V  +++ RR+ ++  +
Sbjct: 542  PVIEFLEEWGLESLEENAHSSTPCT-KVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPE 600

Query: 596  VEIKRDELQSEVRIFMDAGRILRPLLVVENM------GKIKSL-------EGKNYTFQAL 642
            V + RD  + E+R++ DAGR+ RPL +VEN         IK L       +G+ Y ++ L
Sbjct: 601  VSVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQKKHIKWLNQGYRDDDGEEYKWEHL 660

Query: 643  LDHGIIELVGTEEEEDCCTAWGIKYLLKDIE----------------DKKPIK------- 679
            +  GIIEL+  EEEE       I    +D+E                D  P         
Sbjct: 661  VKSGIIELLDAEEEETVM----ISMTPEDLENSRLQSAGIDPHTNDGDYDPAARLKAGNN 716

Query: 680  ---FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLS 736
               +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DT++
Sbjct: 717  SHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGIYLTNFLVRMDTMA 775

Query: 737  HQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMN 796
            + L+YPQ+PL  T   +            L   EL  GQNAIVA+  + GYNQEDS++MN
Sbjct: 776  NILYYPQKPLATTRSME-----------YLKFRELPAGQNAIVAILCYSGYNQEDSVIMN 824

Query: 797  RASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFI 856
            ++S++RG+FRS + RSY  +++ K    +    +       ++ K G  D L+DDG    
Sbjct: 825  QSSIDRGLFRSIYYRSY-MDLEKKSGVQQLEEFEKPTRDNTLRMKHGTYDKLEDDGLIAP 883

Query: 857  GANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGK 901
            G  +   DI+IGK A                +  D S  LK TE G+V +V++++N +G+
Sbjct: 884  GTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQ 943

Query: 902  NFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQ 961
             F  + +R  R P +GDKF+S HGQKG +G    QE+ PFT +GIVPDIVINPHA PSR 
Sbjct: 944  KFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIVINPHAIPSRM 1003

Query: 962  TPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDG 1021
            T G L+E  L K    +G       +  ATPF   +V++++  L + G+   G E +Y G
Sbjct: 1004 TIGHLVECLLSKVATLIGN------EGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHG 1057

Query: 1022 RTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMER 1081
             TG  +++ +++GPT+YQRL HM +DK+  R  GPV  LTRQPV  R R GG++FGEMER
Sbjct: 1058 HTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMER 1117

Query: 1082 DCLIAHGAAANLHERLFTLSDSYQMHICRKC--KNVANVIQRVVGGGRKVRGPYCRICDS 1139
            DC+I+HG A  L ERLF  SD+Y++H+C  C    +AN+         K +   CR C +
Sbjct: 1118 DCMISHGVAGFLKERLFEASDAYRLHVCDICGLTAIANL---------KKQSFECRACKN 1168

Query: 1140 GDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
                 +  +PY AKLL QEL SM I  +  T
Sbjct: 1169 KTACSQLYIPYAAKLLFQELQSMNIAARLYT 1199


>gi|169844839|ref|XP_001829140.1| DNA-dependent RNA polymerase II second largest subunit [Coprinopsis
            cinerea okayama7#130]
 gi|116509880|gb|EAU92775.1| DNA-dependent RNA polymerase II second largest subunit [Coprinopsis
            cinerea okayama7#130]
          Length = 1222

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/1219 (33%), Positives = 638/1219 (52%), Gaps = 112/1219 (9%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYAS 85
            C     SFF++ GLV  Q++S++EF++N +Q+  D   + I++     + +     R   
Sbjct: 34   CWTVISSFFDQKGLVRQQLDSFDEFVQNTMQELVDENSDLILDQADQHTGQAGDMTRRYE 93

Query: 86   MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
            ++FGQ+ L +P+    +G     +FP+ ARL+N+TYS+ + ++++ +V   +    D   
Sbjct: 94   IKFGQIYLSRPTVTEADGS-VVPVFPQEARLRNLTYSAPLYIEMRKRVLVGR---EDPAV 149

Query: 146  TGREQY-IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFII 198
             G   +  + E    +   I IG++P+M++S  C +  +   D      C +D GGYFII
Sbjct: 150  PGDITWEAEHEDTDGDAAKIWIGKVPIMLRSSFCILHELRDQDLYDLNECPYDSGGYFII 209

Query: 199  KGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKRNRLIVRLVDMSKF----ED 249
             G+EKV +AQE++    ++V      + + +    +S  +R    +    +  F    E 
Sbjct: 210  NGSEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVERGGKTISQFQVKMFHRNQER 269

Query: 250  IKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADN 309
              G     ++ ++  +IPIW++F ALGV SD++I+  I +  +D  +L +L   I D   
Sbjct: 270  SLGNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFV 329

Query: 310  KCDEFRKGRNALKYVDKLIKGTTFPPGES---TEECMNTYLFPSLH----GTKQKARFLG 362
              D       AL ++      T  P        +E +   + P +        +KA F G
Sbjct: 330  IQDR----EVALDFIGNRGTTTGLPRDRRIRYAQEILQKEMLPHISMAEGSESKKAYFFG 385

Query: 363  YMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGD 422
            YM+  LL A   RR+ D+RD F  KRL+LAG LL    ++      K + + LQ+ +   
Sbjct: 386  YMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETH 445

Query: 423  RTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
            +    +   +    +TNGL  + +TG W    K     +G+   L R     TL  LRR 
Sbjct: 446  KEFN-LSLAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRC 504

Query: 483  RQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQL 541
               +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  S   P+ E L
Sbjct: 505  NTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFL 564

Query: 542  FNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
               G+E L ++A +S     KVFV+G W+GV +D  + V  +++ RR+ ++  +V + RD
Sbjct: 565  EEWGLESLEENA-HSTTPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRD 623

Query: 602  ELQSEVRIFMDAGRILRPLLVVEN------------MGKIKSLEGKNYTFQALLDHGIIE 649
              + E+R++ DAGR+ RPL +VEN            +   ++ +G+ + ++ L+  GI+E
Sbjct: 624  IRERELRLYTDAGRVCRPLFIVENQQLVLQKKHVRWLANSENDDGEEWKWENLIKSGIVE 683

Query: 650  LVGTEEEED---CCTAWGIKYL--------LKDIEDKKPIK----------FTHCELDMS 688
            L+  EEEE    C T   ++          ++D ED  P            +THCE+  S
Sbjct: 684  LLDAEEEETVMICMTPEDLEVSRRQSEGMEIQDHEDYDPAARLKAGTHAHTWTHCEIHPS 743

Query: 689  FLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFR 748
             +LG+   IIPF +H+ + R  YQS     QA+G   TN  IR+DT+++ L+YPQ+PL  
Sbjct: 744  MILGICASIIPFPDHNQSPRNTYQS-AMGKQAMGIFLTNFLIRMDTMANILYYPQKPLAT 802

Query: 749  TMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSE 808
            T   +            L   EL  GQN+IVA+  + GYNQEDS+++N++S++RG+FRS 
Sbjct: 803  TRSME-----------YLKFRELPAGQNSIVAILCYSGYNQEDSVIVNQSSIDRGLFRSI 851

Query: 809  HIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIG 868
            + RSY  +++ K    +    +       ++ K G  D ++DDG    G N+   DI+IG
Sbjct: 852  YYRSY-MDLEKKSGIQQLEEFEKPTRETTLRMKHGTYDKIEDDGLIAPGTNVTGEDIIIG 910

Query: 869  KYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRS 913
            K A                +  D S  LK TE G+V +V++++N +G+ F  V +R  R 
Sbjct: 911  KTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRI 970

Query: 914  PCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGK 973
            P +GDKF+S HGQKG +G    QE+ PFT +GIVPD++INPHA PSR T G L+E  L K
Sbjct: 971  PQIGDKFASRHGQKGTIGIAYRQEDMPFTAEGIVPDLIINPHAIPSRMTIGHLVECLLSK 1030

Query: 974  GIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFI 1033
                +G       +  ATPF   +V+ ++  L + G+   G E +Y G TG  +++ +++
Sbjct: 1031 VATLIGN------EGDATPFTDLTVEGVSTFLRQRGYQSRGLEVMYHGHTGRKLQAQVYL 1084

Query: 1034 GPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL 1093
            GPT+YQRL HM +DK+  R  GPV  LTRQPV  R R GG++FGEMERDC+I+HG A  L
Sbjct: 1085 GPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFL 1144

Query: 1094 HERLFTLSDSYQMHICRKC--KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYG 1151
             ERLF  SD+Y++H+C  C    +AN+         K +   CR C +     +  +PY 
Sbjct: 1145 KERLFDASDAYRLHVCDICGLTAIANL---------KKQSFECRACKNKTACSQLYIPYA 1195

Query: 1152 AKLLCQELFSMGITLKFDT 1170
            AKLL QEL SM I  +  T
Sbjct: 1196 AKLLFQELQSMNIAARLYT 1214


>gi|384245445|gb|EIE18939.1| RNA polymerase II second largest subunit [Coccomyxa subellipsoidea
            C-169]
          Length = 1170

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/1200 (34%), Positives = 646/1200 (53%), Gaps = 122/1200 (10%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP--GYDPSKKGEGEWRYASMRFG 89
            +FF   GLV  Q++S+NEFI + +Q+  D +G  +V+P   ++P    E E +   + FG
Sbjct: 28   AFFEAKGLVRQQLDSFNEFINSNMQEIVDEYGTLLVKPESQHNPGM-AELEEKEYKVEFG 86

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
            Q+ L KP+    +G +   +FP+ ARL+N+TY++ + + ++  V T  RV + + +T  E
Sbjct: 87   QIYLSKPTMTEADG-ETVVLFPKEARLRNLTYAAPLYIDIKKTVIT--RVPNGEAETEEE 143

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWM------KGVEKGDCDFDHGGYFIIKGAEK 203
             Y            I IG +P+M++S  C +      +  + G+C +D GGYF++ G+EK
Sbjct: 144  SY----------PKIFIGEVPIMLRSSYCSLHERTNQQLTQLGECPYDQGGYFVVNGSEK 193

Query: 204  VFVAQEQICLKRLWV-SNSMGWTVAYKSE-------NKRN--RLIVRLVDMSKFEDIKGG 253
            V +AQE++   +++V   S     AY++E       + RN   + +R++  S     KGG
Sbjct: 194  VLIAQERMANNQVYVFRKSQPSKYAYQAECRSVVENSTRNTSSMSIRMLARSGG---KGG 250

Query: 254  EKV-LSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD 312
            + +  ++ ++  +IPI I+F ALG+++DK+I+  + +   D +++  L  SI +A     
Sbjct: 251  QAIRATLPYIRADIPILIIFRALGLTADKDILQHVVYDFNDTAMMEALRPSIEEAF---- 306

Query: 313  EFRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLH----GTKQKARFL 361
              +    AL ++ K  +G+   PG + E       + +   + P +        +KA F 
Sbjct: 307  PIQTQEVALDFIGK--RGSN--PGVTREKRIHYARDILQREMLPHVAIGEFSETKKAYFF 362

Query: 362  GYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYG 421
            GYMV  LL    GRR  D+RD + NKRL+L G LL    +       K +   +Q+ +  
Sbjct: 363  GYMVHRLLLVALGRRDQDDRDHYCNKRLDLGGPLLANLFRQLFRKLTKDVRSHVQKAVDR 422

Query: 422  DRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRR 481
             + +  +   ++   +T GL  + +TG W        R +G+   L R     TL  LRR
Sbjct: 423  GKEIN-LMAAVNKDTITRGLRYSIATGNWGMQGTAGMR-AGVSQVLNRLTYASTLSHLRR 480

Query: 482  TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQ 540
                +   GK+   R  H S WG IC   TP+G+ CGLVKNL +   VS      PI E 
Sbjct: 481  ISSPIGREGKLAKPRQLHNSQWGVICPAETPEGQACGLVKNLALMSYVSVGCPSAPIGEF 540

Query: 541  LFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKR 600
            L     E L +     +    KVFV+G W+G+ +     V+ LR+ RR+ ++ T+V I  
Sbjct: 541  LEEWSTENLEEINPSVILEATKVFVNGVWVGIHRQPAVLVNTLRKMRRQVDISTEVGIVH 600

Query: 601  DELQSEVRIFMDAGRILRPLLVVE-----------NMGKIKSLEGKNYTFQALLDHGIIE 649
            D    E+R++ D GR  RPL +V+           ++ +++  E  ++ +  L+  G IE
Sbjct: 601  DIRLQELRLYTDYGRCCRPLFIVDPDRKRLTITKDDIRQLQEREVTHFGWNELVHKGCIE 660

Query: 650  LVGTEEEEDCCTAWGIKYLLKDIEDKKPI-------KFTHCELDMSFLLGLSCGIIPFAN 702
             + TEEEE    A  IK    D+E+ +          +THCE+  S +LG+   IIPF +
Sbjct: 661  YIDTEEEETTMIAMEIK----DLENARTPGRVAYSETYTHCEIHPSMILGVCASIIPFPD 716

Query: 703  HDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGH 762
            H+ + R  YQS     QA+G   TN   R+DT ++ L+YPQ+PL  T   +        H
Sbjct: 717  HNQSPRNTYQS-AMGKQAMGMYVTNYQTRMDTQAYVLYYPQKPLVTTRAME--------H 767

Query: 763  NHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEM 822
             H     EL  GQN IVA+  + GYNQEDSL+MN++S++RG FRS   R+Y+AE + K+ 
Sbjct: 768  LHFR---ELPAGQNTIVAIACYSGYNQEDSLMMNQSSIDRGFFRSMFFRTYRAE-EKKQG 823

Query: 823  QVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGK---YAD------- 872
             + +   +       +  + G  D LDDDG    G  +   D++IGK    AD       
Sbjct: 824  SLVQEVIEVPDRSVTVAMRHGTYDKLDDDGIAPPGTRVSGEDVIIGKTSPLADEQPGVAQ 883

Query: 873  --SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVL 930
              S  D S  L+++E GM+ +V++++N +G+ F  + +R +R P +GDKF+S HGQKG +
Sbjct: 884  RFSKKDVSTSLRNSESGMIDQVMVTTNAEGQRFVKIRVRSIRIPQVGDKFASRHGQKGTI 943

Query: 931  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYA 990
            G   +QE+ P+T +GIVPD++INPHA PSR T G L+EA + K  A +GK      +  A
Sbjct: 944  GMTYTQEDMPWTSEGIVPDLIINPHAIPSRMTIGHLVEALMSKVAALVGK------EGDA 997

Query: 991  TPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVK 1050
            TPFA  +VD I+  LH  G+   G E +Y+G TG  +++ IF+ PT+YQRL HM +DK+ 
Sbjct: 998  TPFAEVTVDNISAALHTCGYQSRGWETMYNGHTGRRLQAQIFLNPTYYQRLKHMVDDKIH 1057

Query: 1051 FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICR 1110
             R  GPV  LTRQPV  R R GG++FGEMERDC+I+HG+AA L ERLF  SD+Y++H+C 
Sbjct: 1058 SRGRGPVQILTRQPVEGRARDGGLRFGEMERDCIISHGSAAFLKERLFDQSDAYRVHVCD 1117

Query: 1111 KCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
            +C    VAN+         K    +C  C +   IV+ ++PY  KLL QEL +M I  + 
Sbjct: 1118 RCGLFAVANL---------KKNQFHCPACKNTTGIVQVHMPYACKLLFQELMAMAIAPRM 1168


>gi|95115793|gb|ABF56191.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. tritici]
          Length = 1262

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/1277 (34%), Positives = 643/1277 (50%), Gaps = 162/1277 (12%)

Query: 18   GEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPG--YDPSK 75
            G E     C     SFF+  GLVS Q++SY+EF +N +Q      G  I+E    YDP +
Sbjct: 17   GGEITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDE 76

Query: 76   KGEG--EWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQV 133
              +   + RY  ++FG+V L +P+   G+G     +FP  ARL+N+TYS  M   +  ++
Sbjct: 77   DSDPIIKRRY-EIKFGRVYLARPTHTEGDGTTVA-LFPHEARLRNLTYSGAMLADISNRI 134

Query: 134  YTQKR-------------VTSDKFKTGREQYIQKEV-LSDETTNIIIGRIPVMVKSDLCW 179
               K              VT+      + ++ +++V + DE   + IG++PVM++S+LC 
Sbjct: 135  MVAKETQVVAEGEDEDMEVTNTVGGPTQIKWEREDVPMDDEAARVFIGKLPVMLRSELCH 194

Query: 180  MKGVEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV----SNSMGWTVAYK 229
            ++           +C +D GGYF+I G+EKV +AQE+     + V       + WT   +
Sbjct: 195  LRNQTDEALFAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGPIPWTAEIR 254

Query: 230  SE-NKRNRLI----VRLVDMS-----KFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSS 279
            S   K  RLI    ++  D S     + +   G      + ++ TE+P+ I+F ALG+ S
Sbjct: 255  SAVEKGTRLISSFNIKWADNSLANPGQGKRAPGPFAYAMLPYIKTEVPMAIVFRALGIVS 314

Query: 280  DKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDK--LIKGTTFPPGE 337
            D+EI++ I +   D  +L +L  SI +     D       AL ++ K    +GT     +
Sbjct: 315  DEEILSHIVYDRTDTQMLELLKPSIEEGAVVQDR----ETALDFIAKRGANQGTRDRRLK 370

Query: 338  STEECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAG 393
               + M     P +   +    +KA F GYM+  LLQ   GRR  D+RD F  KRL+LAG
Sbjct: 371  FARDIMQREFLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAG 430

Query: 394  ELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHP 453
             L+    ++      K + K LQR +    T   ++  + ASI+TNGL  + +TG W   
Sbjct: 431  PLVANLFRILFLKLTKDVFKYLQRCVESS-TDFNVQMAVKASIITNGLKYSLATGNWGDQ 489

Query: 454  FKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPD 513
             K     +G+   L R     TL  LRRT   V   GK+   R  H SHWG +C   TP+
Sbjct: 490  KKAASAKAGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPE 549

Query: 514  GENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGV 572
            G+ CGLVKNL +   VS  S   PI + +    M+ L +          KVFV+G W+GV
Sbjct: 550  GQACGLVKNLSLMCYVSVGSDATPIVDFMSQRNMQLLEEYDQNQNPEATKVFVNGVWVGV 609

Query: 573  CKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKS- 631
               +   VS ++  RR   L  ++ + RD    E +IF DAGR++RPL VVEN     + 
Sbjct: 610  HSHAQQLVSVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENNPSKPNR 669

Query: 632  ------------------------------LEGKNYTFQALLDHGIIELVGTEEEEDCCT 661
                                          +    Y ++ L+  G+IE +  EEEE    
Sbjct: 670  NQLVFDREISNRLVKEQLDSDTRAGWSDTDIADNTYGWKGLIQDGVIEYLDAEEEETAMI 729

Query: 662  AWGIKYL-------------------------LKDIEDKKPIKFTHCELDMSFLLGLSCG 696
             +  + L                         +K   D +   +THCE+  + +LG+   
Sbjct: 730  TFSPEDLDEWRGMKMGLPTNERANLGKERLRRIKPKPDPRIHAYTHCEIHPAMILGICAS 789

Query: 697  IIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLG 756
            IIPF +H+ + R  YQS     QA+G   TN ++R++T+ + L+YPQ+PL  T   +   
Sbjct: 790  IIPFPDHNQSPRNTYQS-AMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSME--- 845

Query: 757  KPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAE 816
                     L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y   
Sbjct: 846  --------YLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTE- 896

Query: 817  VDNKEMQVKRRSSDDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKY 870
                  Q KR   + +  F K      ++ K G  D LDDDG    G  +   DI+IGK 
Sbjct: 897  ------QEKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKT 950

Query: 871  ADSGADH---------------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPC 915
            A   AD                S  L+ TE G+V +V+ ++N +G  F  V  R  + P 
Sbjct: 951  APIAADAQELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQ 1010

Query: 916  LGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGI 975
            +GDKF+S HGQKG +G    QE+ PFT +G+ PD++INPHA PSR T   L+E  L K  
Sbjct: 1011 IGDKFASRHGQKGTIGITYRQEDMPFTSEGLTPDLIINPHAIPSRMTIAHLVECLLSK-- 1068

Query: 976  AALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGP 1035
                 G  +G +  ATPF   +VD I++ L +AG+ K G E +Y+G TG+ +R  +F+GP
Sbjct: 1069 ----VGAITGQEGDATPFTEVTVDEISDLLEQAGYQKRGFEIMYNGHTGKKMRVQVFLGP 1124

Query: 1036 TFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHE 1095
            T+YQRL HM +DK+  R  GP+  LTRQPV  R R GG++FGEMERDC+IAHGAAA L E
Sbjct: 1125 TYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKE 1184

Query: 1096 RLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPY-CRICDSGDDIVKANVPYGAKL 1154
            RLFT+SD+Y +H+C  C  ++ +           +G Y CR C +   I + ++PY AKL
Sbjct: 1185 RLFTVSDAYTVHVCDICGLMSPI-------ASIKKGMYECRPCHNKTRISQIHIPYAAKL 1237

Query: 1155 LCQELFSMGITLKFDTE 1171
            L QEL +M I  +  T+
Sbjct: 1238 LFQELLAMNIATRMFTD 1254


>gi|403417741|emb|CCM04441.1| predicted protein [Fibroporia radiculosa]
          Length = 1226

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1258 (33%), Positives = 654/1258 (51%), Gaps = 136/1258 (10%)

Query: 2    DSDDNGFTDPTSLCDLGEEFLKTF----CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQK 57
            D   +G+ D T      EE  +T     C     SFF + GLV  Q++S++EF++N +Q+
Sbjct: 8    DLTQSGYYDETGYGLDDEEEYETITQEDCWTVISSFFEQKGLVRQQLDSFDEFVQNTMQE 67

Query: 58   AFDSFGETIVE-----PGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPR 112
              D   + I++      G+D    G+   RY  ++FGQ+ L +P+    +G     +FP+
Sbjct: 68   LVDENADLILDQSDQHTGHD----GDVNRRY-EIKFGQIYLSRPTVTEADGS-VAPVFPQ 121

Query: 113  HARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVM 172
             ARL+N+TYS+ + ++++ +V    R   D          + E   ++T  + IG++P+M
Sbjct: 122  EARLRNLTYSAPLYIEMKKRVLV-GREDPDSLTGDMTWEPEHEENPEDTRKVWIGKVPIM 180

Query: 173  VKSDLCWMKGVEKGD------CDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNS 221
            ++S  C + G+   D      C FD GGYFII G+EKV +AQE++    ++V      + 
Sbjct: 181  LRSSFCILHGLVDEDVYDLNECPFDSGGYFIINGSEKVLIAQERMATNHVYVFAKAQPSP 240

Query: 222  MGWTVAYKSENKRNRLIVRLVDMSKF----EDIKGGEKVLSVYFLSTEIPIWILFFALGV 277
            + +    +S  +R    +    +  F    E   G     ++ ++  +IPIW++F ALGV
Sbjct: 241  ISFLAEIRSAVERGGKTISQFQVKLFHRNQERSLGNVMKATIPYIRVDIPIWVVFRALGV 300

Query: 278  SSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGE 337
             SD++I+  I +  +D  +L +L   I D     D       AL ++    +GTT     
Sbjct: 301  ISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDR----EVALDFIGN--RGTTTGLNR 354

Query: 338  S-----TEECMNTYLFPSLH----GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKR 388
                   +E +   + P +        +KA F GYM+  LL A   RR  D+RD F  KR
Sbjct: 355  ERRLRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAAMERRDLDDRDHFGKKR 414

Query: 389  LELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASI----LTNGLSRA 444
            L+LAG LL    ++      K + + LQ+ +   +     E+ L+ ++    +TNGL  +
Sbjct: 415  LDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHK-----EFNLNLAVKHNTITNGLKYS 469

Query: 445  FSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWG 504
             +TG W    K     +G+   L R     TL  LRR    +   GK+   R  H +HWG
Sbjct: 470  LATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWG 529

Query: 505  KICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKV 563
             +C   TP+G+ CGLVKNL +   +S  S+  P+ E L   G+E L ++A +S     KV
Sbjct: 530  MVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLESLEENA-HSATPCTKV 588

Query: 564  FVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVV 623
            FV+G W+GV +D  + V  +++ RR+ ++  +V + RD  + E+R++ DAGR+ RPL +V
Sbjct: 589  FVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIV 648

Query: 624  ENM------GKIKSL------EGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLK- 670
            EN         IK L      + + Y +  L+  G+IEL+  EEEE    +   + L   
Sbjct: 649  ENQQLLLTKKHIKYLNDGVDDQNEQYKWDQLIKGGVIELLDAEEEETVMISMNPEDLENS 708

Query: 671  --------------DIEDKKPIK-------FTHCELDMSFLLGLSCGIIPFANHDHARRV 709
                          D +    +K       +THCE+  S +LG+   IIPF +H+ + R 
Sbjct: 709  RLQSSGMDPHANDPDFDPAARLKPTITAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRN 768

Query: 710  LYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRP 769
             YQS     QA+G   TN  +R+DT+++ L+YPQ+PL  T   +            L   
Sbjct: 769  TYQS-AMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSME-----------YLRFR 816

Query: 770  ELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSS 829
            EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS + RSY  +++ K    +    
Sbjct: 817  ELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRSY-MDLEKKSGVQQLEEF 875

Query: 830  DDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---------------DSG 874
            +       ++ K G  D L+DDG    G  +   DI+IGK A                + 
Sbjct: 876  EKPTRENTLRMKHGTYDKLEDDGLIAPGTGVNGEDIIIGKTAPIPPDSEELGQRTRAHTR 935

Query: 875  ADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLE 934
             D S  LK TE G++ +V++++N +G+ F  + +R  R P +GDKF+S HGQKG +G   
Sbjct: 936  RDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 995

Query: 935  SQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFA 994
             QE+ PFT +GI PD++INPHA PSR T G L+E  L K    +G       +  ATPF 
Sbjct: 996  RQEDMPFTAEGITPDLIINPHAIPSRMTIGHLVECLLSKVATLIGN------EGDATPFT 1049

Query: 995  TPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNT 1054
              +V+++++ L + G+   G E +Y G TG  +++ +++GPT+YQRL HM +DK+  R  
Sbjct: 1050 DLTVESVSQFLRQKGYQSRGLEIMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRAR 1109

Query: 1055 GPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKC-- 1112
            GPV  LTRQPV  R R GG++FGEMERDC+I+HG AA L ERLF  SD+Y++H+C  C  
Sbjct: 1110 GPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGVAAFLKERLFEASDAYRLHVCDICGL 1169

Query: 1113 KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
              +AN+ ++            CR C +     +  +PY AKLL QEL SM I  +  T
Sbjct: 1170 TAIANLKKQTFE---------CRSCKNKTACSQLYIPYAAKLLFQELQSMNIAARLYT 1218


>gi|392571043|gb|EIW64215.1| DNA-dependent RNA polymerase II second largest subunit [Trametes
            versicolor FP-101664 SS1]
          Length = 1231

 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1234 (33%), Positives = 651/1234 (52%), Gaps = 121/1234 (9%)

Query: 19   EEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGE 78
            EE  +  C     SFF++ GLV  Q++S++EF++N +Q+  D   + I++     +    
Sbjct: 29   EEITQEDCWTVISSFFDQKGLVRQQLDSFDEFVQNTMQELVDENADLILDQADQHTGHES 88

Query: 79   GEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKR 138
               R   ++FGQ+ L +P+    +G     +FP+ ARL+N+TYS+ + ++++ +V    R
Sbjct: 89   DVTRRYEIKFGQIYLSRPTVTEADGS-VVPIFPQEARLRNLTYSAPLYIEMKKRVLL-GR 146

Query: 139  VTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDH 192
               D          + +   ++T  + IG++P+M++S  C + G+E        +C +D 
Sbjct: 147  EDPDSATGDMVWETEHDDNPEDTRKVWIGKVPIMLRSTFCILHGLEDDELYDLNECPYDS 206

Query: 193  GGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSENKR---------NRLIVRLV 242
            GGYFII G+EKV +AQE++    ++V + +    +++ +E +          ++  V+L 
Sbjct: 207  GGYFIINGSEKVLIAQERMATNHVYVFAKAQPSPISFLAEIRSAVEKGGKTISQFQVKLY 266

Query: 243  DMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFA 302
              S+ E   G     ++ ++  +IPIW++F ALGV SD++I+  I +  +D  +L +L  
Sbjct: 267  HRSQ-ERSLGNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDNQMLEMLKP 325

Query: 303  SIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSLH----G 353
             I +     D       AL Y+    +GTT            +E +   + P +      
Sbjct: 326  CIDEGFVIQDR----EIALDYIGN--RGTTTGLNRERRLRYAQEILQKEMLPHVSMAEGS 379

Query: 354  TKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAK 413
              +KA F GYM+  LL A   RR  D+RD F  KRL+LAG LL    ++      K + +
Sbjct: 380  ESKKAYFFGYMIHRLLLAALERRDLDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYR 439

Query: 414  ALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPL 473
             LQ+ +   +  + +   +  + +TNGL  + +TG W    K     +G+   L R    
Sbjct: 440  YLQKCVETHKEFQ-LGLAVKHNTITNGLKYSLATGNWGDQKKTMSSKAGVSQVLNRYTYA 498

Query: 474  QTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-S 532
             TL  LRR    +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  S
Sbjct: 499  STLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGS 558

Query: 533  ILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL 592
            +  P+ E L   G+E L ++A  S     KVFV+G W+GV +D  + V  +++ RR+ ++
Sbjct: 559  LSAPVIEFLEEWGLESLEENAHSSTPCT-KVFVNGVWMGVHRDPANLVKTIKKLRRKDDI 617

Query: 593  PTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKI---KSLE----GKN--------- 636
              +V + RD  + E+R++ DAGR+ RPL +VEN   +   K +E    GK          
Sbjct: 618  SAEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLLLQKKHIENLARGKEEPEKDATKF 677

Query: 637  -YTFQALLDHGIIELVGTEEEED---CCT----------AWGIKYLLKDIED------KK 676
             Y +  L+  G+IEL+  EEEE    C T          + GI     D E       K 
Sbjct: 678  EYKWDNLIKDGVIELLDAEEEETVMICMTPEDLENSRLQSAGIDPHENDGELDPSARLKA 737

Query: 677  PIK---FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVD 733
            P     +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+D
Sbjct: 738  PTNAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGIYLTNFLVRMD 796

Query: 734  TLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSL 793
            T+++ L+YPQ+PL  T   +            L   EL  GQNA+VA+  + GYNQEDS+
Sbjct: 797  TMANILYYPQKPLATTRSME-----------YLKFRELPAGQNAVVAILCYSGYNQEDSV 845

Query: 794  VMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGF 853
            +MN++S++RG+FRS + RSY  +++ K    +    +       ++ K G  D L+DDG 
Sbjct: 846  IMNQSSIDRGLFRSMYYRSY-MDLEKKSGIQQLEEFEKPTRDSTLRMKHGTYDKLEDDGL 904

Query: 854  PFIGANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSND 898
               G N+   DI+IGK A                +  D S  LK TE+G++ +V++++N 
Sbjct: 905  IAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTKRDVSTPLKSTEQGIIDQVLITTNA 964

Query: 899  DGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFP 958
            +G+ F  + +R  R P +GDKF+S HGQKG +G    QE+ PFT +GI PDI+INPHA P
Sbjct: 965  EGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIP 1024

Query: 959  SRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERL 1018
            SR T G L+E  L K    +G       +  ATPF   +V+++++ L + G+   G E +
Sbjct: 1025 SRMTIGHLVECLLSKVATLIGN------EGDATPFTDLTVESVSQFLRQKGYQSRGLEIM 1078

Query: 1019 YDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGE 1078
            Y G TG  +++ +++GPT+YQRL HM +DK+  R  GPV  LTRQPV  R R GG++FGE
Sbjct: 1079 YHGHTGRKIQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGE 1138

Query: 1079 MERDCLIAHGAAANLHERLFTLSDSYQMHICRKC--KNVANVIQRVVGGGRKVRGPYCRI 1136
            MERDC+I+HG AA L ERLF  SD+Y++H+C  C    +AN+ ++            CR 
Sbjct: 1139 MERDCMISHGVAAFLKERLFEASDAYRLHVCDICGLTAIANLKKQTFE---------CRA 1189

Query: 1137 CDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
            C +     +  +PY AKLL QEL SM I  +  T
Sbjct: 1190 CRNKTACSQIYIPYAAKLLFQELQSMNIAARLYT 1223


>gi|82621735|gb|ABB86549.1| second largest subunit of RNA polymerase II [Phaeosphaeria nodorum]
 gi|95115801|gb|ABF56195.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
 gi|95115803|gb|ABF56196.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
 gi|95115805|gb|ABF56197.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
 gi|95115807|gb|ABF56198.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
 gi|95115809|gb|ABF56199.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
 gi|95115811|gb|ABF56200.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
          Length = 1262

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/1277 (34%), Positives = 645/1277 (50%), Gaps = 162/1277 (12%)

Query: 18   GEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPG--YDPSK 75
            G E     C     SFF+  GLVS Q++SY+EF +N +Q      G  I+E    YDP +
Sbjct: 17   GGEITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDE 76

Query: 76   KGEG--EWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQV 133
              +   + RY  ++FG+V L +P+   G+G     +FP  ARL+N+TYS  M   +  ++
Sbjct: 77   DSDPIIKRRY-EIKFGRVYLARPTHTEGDGTTVA-LFPHEARLRNLTYSGAMLADISNRI 134

Query: 134  YTQKR-------------VTSDKFKTGREQYIQKEV-LSDETTNIIIGRIPVMVKSDLCW 179
               K              VT+      + ++ +++V + +E+  + IG++PVM++S+LC 
Sbjct: 135  MVAKETQVVVEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCH 194

Query: 180  MKGVEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV----SNSMGWTVAYK 229
            ++           +C +D GGYF+I G+EKV +AQE+     + V      ++ WT   +
Sbjct: 195  LRNQSDEALFAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGNVPWTAEIR 254

Query: 230  SE-NKRNRLI----VRLVDMS-----KFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSS 279
            S   K  RLI    ++  D S     + +   G      + ++  E+P+ I+F ALG+ S
Sbjct: 255  SAVEKGTRLISSFNIKWADTSLGNPGQGKRAPGPFAYAMLPYIKQEVPMAIVFRALGIVS 314

Query: 280  DKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDK--LIKGTTFPPGE 337
            D+EI++ I +   D  +L +L  SI +     D       AL ++ K    +GT     +
Sbjct: 315  DEEILSHIVYDRTDTQMLELLKPSIEEGAVIQDR----ETALDFIAKRGANQGTRDRRLK 370

Query: 338  STEECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAG 393
               + M     P +   +    +KA F GYM+  LLQ   GRR  D+RD F  KRL+LAG
Sbjct: 371  FARDIMQREFLPHISQKEGQDTRKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAG 430

Query: 394  ELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHP 453
             L+    ++      K + K LQR +    T   ++  + ASI+TNGL  + +TG W   
Sbjct: 431  PLVANLFRILFLKLTKDVFKYLQRCVESS-TDFNVQMAVKASIITNGLKYSLATGNWGDQ 489

Query: 454  FKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPD 513
             K     +G+   L R     TL  LRRT   V   GK+   R  H SHWG +C   TP+
Sbjct: 490  KKAASAKAGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPE 549

Query: 514  GENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGV 572
            G+ CGLVKNL +   VS  S   PI + +    M+ L +          KVFV+G W+GV
Sbjct: 550  GQACGLVKNLSLMCYVSVGSDATPIIDFMSQRNMQLLEEYDQNQNPEATKVFVNGVWVGV 609

Query: 573  CKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKS- 631
               +   VS ++  RR   L  ++ + RD    E +IF DAGR++RPL VVEN     + 
Sbjct: 610  HSQAQQLVSVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENNPTKPNR 669

Query: 632  ------------------------------LEGKNYTFQALLDHGIIELVGTEEEEDCCT 661
                                          +    Y ++ L+  G+IE +  EEEE    
Sbjct: 670  NQLVFDREISNRLVKEQLDSDTRAGWSDADIADNTYGWKGLIQDGVIEYLDAEEEETAMI 729

Query: 662  AW---------GIKYLLKDIE----------------DKKPIKFTHCELDMSFLLGLSCG 696
             +         G+K  L   E                D +   +THCE+  + +LG+   
Sbjct: 730  TFSPEDLDEWRGMKMGLPTSERANLGKERLRRIKPKPDPRIHAYTHCEIHPAMILGICAS 789

Query: 697  IIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLG 756
            IIPF +H+ + R  YQS     QA+G   TN ++R++T+ + L+YPQ+PL  T   +   
Sbjct: 790  IIPFPDHNQSPRNTYQS-AMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSME--- 845

Query: 757  KPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAE 816
                     L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y   
Sbjct: 846  --------YLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTE- 896

Query: 817  VDNKEMQVKRRSSDDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKY 870
                  Q KR   + +  F K      ++ K G  D LDDDG    G  +   DI+IGK 
Sbjct: 897  ------QEKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKT 950

Query: 871  ADSGADH---------------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPC 915
            A   AD                S  L+ TE G+V +V+ ++N +G  F  V  R  + P 
Sbjct: 951  APIAADAQELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQ 1010

Query: 916  LGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGI 975
            +GDKF+S HGQKG +G    QE+ PFT +G+ PD+VINPHA PSR T   L+E  L K  
Sbjct: 1011 IGDKFASRHGQKGTIGITYRQEDMPFTSEGLTPDLVINPHAIPSRMTIAHLVECLLSK-- 1068

Query: 976  AALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGP 1035
                 G  +G +  ATPF   +VD I++ L +AG+ K G E +Y+G TG+ +R  +F+GP
Sbjct: 1069 ----VGAITGQEGDATPFTEVTVDEISDLLEQAGYQKRGFEIMYNGHTGKKMRVQVFLGP 1124

Query: 1036 TFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHE 1095
            T+YQRL HM +DK+  R  GP+  LTRQPV  R R GG++FGEMERDC+IAHGAAA L E
Sbjct: 1125 TYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKE 1184

Query: 1096 RLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPY-CRICDSGDDIVKANVPYGAKL 1154
            RLFT+SD+Y +H+C  C  ++ +           +G Y CR C +   I + ++PY AKL
Sbjct: 1185 RLFTVSDAYTVHVCDICGLMSPI-------ASIKKGMYECRPCHNKTRISQIHIPYAAKL 1237

Query: 1155 LCQELFSMGITLKFDTE 1171
            L QEL +M I  +  T+
Sbjct: 1238 LFQELLAMNIATRMFTD 1254


>gi|343425328|emb|CBQ68864.1| probable DNA-dependent RNA polymerase II RPB140 (RPB2) [Sporisorium
            reilianum SRZ2]
          Length = 1242

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1224 (33%), Positives = 631/1224 (51%), Gaps = 121/1224 (9%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYAS 85
            C     +FF E GLV HQ++S+NEF+ N +Q+  +      +E     S   E + R   
Sbjct: 58   CWDVIRAFFEEKGLVRHQLDSFNEFMSNTIQELVEEVRSLTLEQSDQHSGHAEDKTRRYE 117

Query: 86   MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
            + FGQ+ L+KP+    +G     +FP+ AR +N+TYS+ + V V  +V  Q     D   
Sbjct: 118  IEFGQIYLNKPTMTESDGSSAQ-LFPQEARFRNLTYSASLFVDVTQKVLVQSHDEVDL-- 174

Query: 146  TGREQYIQKEVLSD-ETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFII 198
             G   ++ +   +D E   I IG++P+M+KSD CW+KG++        +C +D GGYF+I
Sbjct: 175  NGDPAWVPEHGKTDVEEQQIFIGKVPIMLKSDFCWLKGLDDEMSYSLNECPYDAGGYFVI 234

Query: 199  KGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSENKR---------NRLIVRLVDMSKFE 248
             G+EKV +AQE++    ++V S +    V + +E +          + + V+L   +K E
Sbjct: 235  NGSEKVLIAQERMAANHVYVFSKAPPAPVTFLAEIRSAVEKGGKTISTMQVKLFSRNK-E 293

Query: 249  DIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDAD 308
                     ++ ++  +IPI I+F ALG+  D+E++  I +   D  +L +L   I +A 
Sbjct: 294  KTANNTIRATLPYIRNDIPIVIVFRALGIVPDREVLQHICYDFNDTPMLEMLKPCIEEAF 353

Query: 309  NKCDEFRKGRNALKYVDKLIKGTTFPPGEST---EECMNTYLFPSLHGTK----QKARFL 361
               D       AL ++ +    T     + T   +E +   + P +  ++    +KA F 
Sbjct: 354  VIQDR----DVALDFIGRRGTTTGLSRAKRTVYAQEILQKEMLPHISTSEGSNTKKAYFF 409

Query: 362  GYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYG 421
            GYM+  LL A   RR+ D+RD F  KR++L G L+    ++      + + + LQ+ +  
Sbjct: 410  GYMIHRLLLAALDRREIDDRDHFGKKRIDLGGPLMANLFRMLFRKVTRDVYRHLQKCVEE 469

Query: 422  DRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRR 481
             R    I+  + +S +TNGL  + +TG W    K  +  +G+   L R     TL  LRR
Sbjct: 470  HREFH-IQAAVKSSTITNGLRYSLATGNWGDQKKAMQAKAGVSQVLNRFAFASTLSHLRR 528

Query: 482  TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQ 540
            T   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   V+      PI E 
Sbjct: 529  TNTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMATVTVGTPSAPIVEF 588

Query: 541  LFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKR 600
            L   G++ L  D   +     K+FV+G W+G   D    V  LR  RR+ ++  +V + R
Sbjct: 589  LEEFGLDSLV-DMQLAHAKATKIFVNGVWMGTHDDPGQLVDTLRDLRRKDDISHEVSVVR 647

Query: 601  DELQSEVRIFMDAGRILRPLLVVE-------------NM-GKIKSLEGKNYTFQALLDHG 646
            D  + E+RI+ DA R+LRP+ +V              NM G+     G+ + +  L+  G
Sbjct: 648  DIRERELRIYTDASRVLRPVFIVNPNDMSLLIKKRHVNMIGQPVPQTGEEFGWTHLVQEG 707

Query: 647  IIELVGTEEEEDCCTAWGIKYL-----------------------LKDIEDKKPIKFTHC 683
            +IE +  EEEE          L                       LK      P  +THC
Sbjct: 708  VIEYLDAEEEESALICMSPTDLEQSREYQARNGQISLNSADPSARLKSPHYIAPSTWTHC 767

Query: 684  ELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQ 743
            E+  + +LG+   IIPF +H+ + R +Y S     QA+    +N   R D+++H L YPQ
Sbjct: 768  EIHPAMVLGICASIIPFPDHNQSPRNVYFSAM-GKQAVSVNISNFLSRADSMNHVLCYPQ 826

Query: 744  RPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERG 803
            +PL  T              H+  R EL  G N IVA+  + GYNQEDS++MN++S++RG
Sbjct: 827  KPLGTTR----------SMEHLKFR-ELPAGTNCIVAIMCYSGYNQEDSVIMNQSSIDRG 875

Query: 804  MFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFG-KIQSKIGRVDSLDDDGFPFIGANLQS 862
            +FRS + R Y AE   K++ V +    +  N    I+ K G  D +D DGF   G  +  
Sbjct: 876  LFRSMYYRGYVAE--EKKVGVMQLEEFEKPNRDTTIRMKHGTYDKIDADGFCAPGTRVSG 933

Query: 863  GDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVS 907
             D++IGK A                +  D SI LK TE G++ +V+L++N  G  F  V 
Sbjct: 934  DDVIIGKTAPLPPDSEELGMRSKLHTKKDASISLKSTENGIIDQVLLTTNSHGNKFVKVR 993

Query: 908  LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLL 967
            +R  R P  GDKF+S HGQKG +G    QE+ PF+ +G+ PDI+INPHA PSR T G L+
Sbjct: 994  VRNTRVPQTGDKFASRHGQKGTIGITYRQEDMPFSAEGVTPDIIINPHAIPSRMTIGHLV 1053

Query: 968  EAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMV 1027
            E  L K +AAL     SG +  ATPF   +V+A++  L   G+   G E +Y G TG  +
Sbjct: 1054 ECLLSK-VAAL-----SGQEGDATPFTELTVEAVSSILRGLGYQSRGLEVMYHGHTGRKL 1107

Query: 1028 RSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAH 1087
            ++ +++GPT+YQRL HM +DK+  R  GPV  LTRQPV  R R GG++FGEMERDC+IAH
Sbjct: 1108 QAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRGGGLRFGEMERDCMIAH 1167

Query: 1088 GAAANLHERLFTLSDSYQMHICRKC--KNVANVIQRVVGGGRKVRGPY-CRICDSGDDIV 1144
            G A  L ER+F +SD Y++H+C  C    +AN+           +G Y CR C +   I 
Sbjct: 1168 GIAGFLKERMFDVSDPYRIHVCDLCGLTALANL----------KKGTYECRSCRNRTAIS 1217

Query: 1145 KANVPYGAKLLCQELFSMGITLKF 1168
            + ++PY AKLL QEL S+ + L+ 
Sbjct: 1218 QIHIPYAAKLLMQELMSVNVALRL 1241


>gi|255717775|ref|XP_002555168.1| KLTH0G02970p [Lachancea thermotolerans]
 gi|238936552|emb|CAR24731.1| KLTH0G02970p [Lachancea thermotolerans CBS 6340]
          Length = 1220

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/1220 (34%), Positives = 634/1220 (51%), Gaps = 116/1220 (9%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +FF E GLVS Q++S+N+FI   +Q +       I+E     + + +   R   + FG++
Sbjct: 32   AFFREKGLVSQQLDSFNQFINYTIQDSIVEDSTLILEQLAQHTTEADNISRKYEISFGKI 91

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             L KPS    +G   H M+P+ ARL+N+TY+S + V+++ + Y    +     K    + 
Sbjct: 92   YLAKPSMTESDGVS-HAMYPQEARLRNLTYASGLFVEIRKRTYEAVDIPGRDLKY---EV 147

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGAEKVF 205
            I +E    + + I IGR+P+M++S  C +  + + D      C FD GGYFII G+EKV 
Sbjct: 148  IDEESEMSDESKIFIGRVPIMLRSKYCLLDELTESDLYKLKECPFDMGGYFIINGSEKVL 207

Query: 206  VAQEQICLKRLWV-SNSMGWTVAYKSE-----NKRNRLIVRL-VDMSKFEDIKGGEKVLS 258
            +AQE+     + V   S    +++ +E      K +R I  L V +   E         +
Sbjct: 208  IAQERSAGNIVQVFKKSAPSPISHIAEIRSALEKGSRFISTLQVKLYGREGSTNRTIKAT 267

Query: 259  VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGR 318
            + ++  +IPI I+F ALG+  D EI+  I +   D  +L +L   + +     D      
Sbjct: 268  LPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLELLKPCVEEGFVIQDR----E 323

Query: 319  NALKYVDKLIKGTTFPPGES-----TEECMNTYLFP---SLHG-TKQKARFLGYMVKCLL 369
             AL ++ +  +GT     +       ++ +     P    L G   +KA FLGYM+  LL
Sbjct: 324  TALDFIGR--RGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLL 381

Query: 370  QAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIE 429
                 R+  D+RD F  KRL+LAG LL +  K       + + + +QR +   +    ++
Sbjct: 382  LCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVEEAKDFN-LK 440

Query: 430  YYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYT 489
              + A+ +T GL  A +TG W    K     +G+   L R     TL  LRRT   +   
Sbjct: 441  LAVKATTITAGLKYALATGNWGEQKKAMTSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRD 500

Query: 490  GKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEK 548
            GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S      PI   L   GME 
Sbjct: 501  GKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPLPIITFLNEWGMEP 560

Query: 549  LADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVR 608
            L D   +      +VFV+G W G+ ++    V  +R+ RR+ ++ ++V I RD  + E++
Sbjct: 561  LEDYVPHQSPDATRVFVNGVWHGIHRNPAKLVDTIRKLRRKGDVTSEVSIVRDIREKELK 620

Query: 609  IFMDAGRILRPLLVVEN--------------------MGKIKSLEGK------NYTFQAL 642
            IF DAGR+ RPL +V+                     M + + +EG       NYT+ +L
Sbjct: 621  IFTDAGRVYRPLFIVDENEETGVKELKLRKGHIRKLMMTEYQDIEGGFEEEDINYTWSSL 680

Query: 643  LDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKP---------IK-------FTHCELD 686
            L+ G++E +  EEEE    A   + L   IE   P         IK       FTHCE+ 
Sbjct: 681  LNEGLVEYIDAEEEETILIAMQHEDLDPTIEAADPEEELDPAKRIKAIHHSSTFTHCEIH 740

Query: 687  MSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPL 746
             S +LG++  IIPF +H+ + R  YQS     QA+G   TN S+R+DT+++ L+YPQ+PL
Sbjct: 741  PSMILGVAASIIPFPDHNQSPRNTYQS-AMGKQAMGVFLTNYSVRMDTMANILYYPQKPL 799

Query: 747  FRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFR 806
              T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FR
Sbjct: 800  GTTRSME-----------YLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 848

Query: 807  SEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIV 866
            S   RSY  +     M +   S +       ++ K G  D LDDDG    G  +   D++
Sbjct: 849  SLFFRSYMDQEKRIGMSITE-SFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGDDMI 907

Query: 867  IGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQV 911
            IGK                  S  D S  L+ TE G+V +V++++N +G  F  V +R  
Sbjct: 908  IGKTTPIPPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRVRTT 967

Query: 912  RSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAAL 971
            + P +GDKF+S HGQKG +G    +E+ PFT +G+VPD++INPHA PSR T   L+E  L
Sbjct: 968  KVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGVVPDLIINPHAIPSRMTVAHLIECLL 1027

Query: 972  GKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLI 1031
             K +AAL     SG +  A+PF   +VD I+  L   G+   G E +Y+G TG+ + + I
Sbjct: 1028 SK-VAAL-----SGNEGDASPFTDITVDGISRLLREHGYQSRGFEVMYNGHTGKKLMAQI 1081

Query: 1032 FIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAA 1091
            F GPT+YQRL HM +DK+  R  GPV  LTRQPV  R R GG++FGEMERDC+IAHGAAA
Sbjct: 1082 FFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAA 1141

Query: 1092 NLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYG 1151
             L ERL   SD++++HIC  C  +  V+ ++     K     CR C +  DI + ++PY 
Sbjct: 1142 FLKERLMEASDAFRVHICGVC-GLMTVVAKL-----KHNQFECRGCKNKIDIYQIHIPYA 1195

Query: 1152 AKLLCQELFSMGITLKFDTE 1171
            AKLL QEL +M I  +  T+
Sbjct: 1196 AKLLFQELMAMNIAPRLYTD 1215


>gi|402219896|gb|EJT99968.1| DNA-dependent RNA polymerase II second largest subunit [Dacryopinax
            sp. DJM-731 SS1]
          Length = 1258

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/1230 (33%), Positives = 646/1230 (52%), Gaps = 136/1230 (11%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYAS 85
            C +   SFF E GLV  Q++S++EF++N +Q+  D  GE I++     S +   E +   
Sbjct: 62   CWQIITSFFEEKGLVRQQLDSFDEFVQNSMQEVVDESGELILDQANQHSGRELDETKRYE 121

Query: 86   MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
            + FGQ+ L +PS    +G +   +FP+ ARL+N+TYS+ + + V+ +V + +    D   
Sbjct: 122  LSFGQIYLSRPSTMEPDGSN-LPIFPQEARLRNLTYSAPLYIDVKKRVLSGRENPEDV-- 178

Query: 146  TGREQYIQKEVLSD-ETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFII 198
             G   +  +   +D E   I +G++PVM++S  C + G+  GD      C +D GGYFII
Sbjct: 179  NGEMIWESQNTDADKEIHKIWVGKVPVMLRSTFCILSGLSDGDLYDLNECPYDQGGYFII 238

Query: 199  KGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE--------NKRNRLIVRLVDMSKFED 249
             G+EKV +AQE++    ++V + +    +++ +E         K+  L+   +     E 
Sbjct: 239  NGSEKVLIAQERMAANHVYVFAKAQPSPISHLAEIRSQVEKGGKQISLLQIKMTHRNLEK 298

Query: 250  IKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADN 309
              G      + ++  +IP+ ++F ALG+  D++++  I +  ED ++L +L   I +A  
Sbjct: 299  STGSLMRAQLPYIRNDIPVVVVFRALGIVPDRDVLEHICYDPEDHAMLEMLKPCIEEAFV 358

Query: 310  KCDEFRKGRNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSLH----GTKQKARF 360
              D       AL Y+ +  +GTT            +E +   + P +        +KA F
Sbjct: 359  IQDR----EVALDYIGR--RGTTTGLSRDKRLRYAQEILQKEMLPHISTQEGAESKKAYF 412

Query: 361  LGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLY 420
             GYMV  L+ A   RR+ D+RD F  KRL+LAG LL    ++      K + + +Q+ + 
Sbjct: 413  FGYMVHRLVLAALDRRELDDRDHFGKKRLDLAGPLLATLFRMLFRRLTKDVYRYMQKCVE 472

Query: 421  GDRTVRPIEYYLDASI----LTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTL 476
              R     E+ ++A++    +TNGL  + +TG W    K  +  +G+   L R     TL
Sbjct: 473  THR-----EFNINAAVKPATITNGLKYSLATGNWGDQKKFMQAKAGVSQVLNRYTFASTL 527

Query: 477  VDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILE 535
              LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  S+ +
Sbjct: 528  SHLRRTNTPIGRDGKIARPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSLSQ 587

Query: 536  PIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQ 595
            P+ E L   G+E L D  + ++    KVFV+G W+G+ ++    V  +R  RR   + ++
Sbjct: 588  PVVEFLEEWGLEPLGDQTNETITAT-KVFVNGVWMGIHRNPQHLVETVRTLRRSDGISSE 646

Query: 596  VEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGK--IKSL------EGKNYTFQA 641
            + + RD  + E+R++ DAGR+ RPL +V        +GK  I  L      EG+ Y +  
Sbjct: 647  ISVVRDIRERELRLYTDAGRVCRPLFIVNEGTQDLVIGKKEINCLQNRVDDEGQPYGWSQ 706

Query: 642  LLDHGIIELVGTEEEEDCCTAW------------GIKYLLKDIEDK----KPI----KFT 681
            L+  G++EL+  EEEE    A             G  Y+  + ++     K I     +T
Sbjct: 707  LVSSGMVELLDAEEEETVMIAMTPEDLEASKTKRGTGYISNEPQNAAVRIKSIVHHEHWT 766

Query: 682  HCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFY 741
            HCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DT+++ L+Y
Sbjct: 767  HCEIHPSMILGICASIIPFPDHNQSPRNTYQS-AMGKQAMGIYLTNFQVRMDTMANILYY 825

Query: 742  PQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLE 801
            PQ+PL  T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++S++
Sbjct: 826  PQKPLATTRSME-----------YLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSID 874

Query: 802  RGMFRSEHIRSYK------AEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPF 855
            RG+FRS + RSY         V  +E +   R +        ++ K G  + L+ DG   
Sbjct: 875  RGLFRSIYYRSYTDMEKSTGVVPIEEFEKPHRDT-------TVRMKHGTYEKLEADGLVA 927

Query: 856  IGANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDDG 900
             G  +   DI+IGK A                +  D S  LK TE G+V +V+LS+N++G
Sbjct: 928  PGIGINGEDIIIGKTAPLPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLLSTNENG 987

Query: 901  KNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSR 960
              F  V +R  R P +GDKF+S HGQKG +G    QE+ PF   GI PDIVINPHA PSR
Sbjct: 988  VKFVKVRIRSTRIPQIGDKFASRHGQKGTIGMTYRQEDMPFAANGITPDIVINPHAIPSR 1047

Query: 961  QTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYD 1020
             T G L+E  L K    +G       +  ATPF   +V++++  L   G+ + G E +Y 
Sbjct: 1048 MTIGHLVECLLSKLATLIGN------EGDATPFTDLTVESVSSLLRNKGYQQRGLEVMYH 1101

Query: 1021 GRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEME 1080
            G TG  +++ +++GPT+YQRL HM +DK+  R  GPV  +TRQPV  R R GG++FGEME
Sbjct: 1102 GHTGRKLQAQVYLGPTYYQRLKHMVDDKIHARARGPVQIMTRQPVEGRSRDGGLRFGEME 1161

Query: 1081 RDCLIAHGAAANLHERLFTLSDSYQMHICRKC--KNVANVIQRVVGGGRKVRGPYCRICD 1138
            RDC+I+HG A+ L ER+F  SD+ ++H+C  C   ++AN+ ++            CR C 
Sbjct: 1162 RDCMISHGVASFLKERMFDQSDAARLHVCDICGLASIANLKKQTF---------ECRACK 1212

Query: 1139 SGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
            +     +  +PY AKLL QEL +M I  + 
Sbjct: 1213 NKTRSTQFYIPYAAKLLLQELQAMNIAPRM 1242


>gi|294659491|ref|XP_002770594.1| DEHA2G07502p [Debaryomyces hansenii CBS767]
 gi|199434003|emb|CAR65929.1| DEHA2G07502p [Debaryomyces hansenii CBS767]
          Length = 1232

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/1265 (33%), Positives = 652/1265 (51%), Gaps = 138/1265 (10%)

Query: 3    SDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSF 62
            S +    DP    D  E      C     SFF E GLVS Q++S++EFI+  +Q+     
Sbjct: 2    SQEQAVEDPYLYDDDSESITPENCWTVISSFFQEKGLVSQQLDSFDEFIETTIQELVWED 61

Query: 63   GETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYS 122
               I++     + + + E R   + FG++ + KP+   G+ G  H MFP+ ARL+N+TYS
Sbjct: 62   SHLILDQPAQHTSEDDHENRRYEITFGKIYISKPTQTEGD-GTTHPMFPQEARLRNLTYS 120

Query: 123  SRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDE--TTNIIIGRIPVMVKSDLCWM 180
            S + V +  +V      + D  +   E    +E + DE   T + +G++P+M++S  C +
Sbjct: 121  SPLYVDMTKKVLK----SDDNNRVDNELEWVEEKIEDEGPQTKVYLGKVPIMLRSKFCML 176

Query: 181  KGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE-- 231
            +G+      E  +C +D GGYF+I G+EKV +AQE+     + V   +    +++ +E  
Sbjct: 177  RGLGEHEFYELKECPYDMGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHIAEIR 236

Query: 232  ---NKRNRLIVRLVDMSKFEDIKG--GEKV-LSVYFLSTEIPIWILFFALGVSSDKEIVN 285
                K +RLI  +       D KG  G  +  ++ ++  +IPI I+F ALGV  D +I+ 
Sbjct: 237  SAIEKGSRLISSMQIKLYGRDDKGTSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILE 296

Query: 286  LIDFTCEDCSILNILFAS------IHDADNKCDEF-RKG------RNALKYVDKLIKGTT 332
             I +   D  +L +L         I + +   D   R+G         ++Y   +++   
Sbjct: 297  HICYDANDWQMLEMLKPCVEEGFVIQEREVALDFIGRRGVLGIRREKRIQYAKDILQKEL 356

Query: 333  FPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELA 392
              P  + EE   T          +KA FLGYMV  LL     R++ D+RD F  KRL+LA
Sbjct: 357  L-PNITQEEGFET----------RKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLA 405

Query: 393  GELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSH 452
            G LL    ++      K +   +QR +  D+    +   + +  +T+GL  + +TG W  
Sbjct: 406  GPLLANLFRILFKKLTKDIYNYMQRCVENDKEFN-LTLAVKSQTITDGLRYSLATGNWGE 464

Query: 453  PFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTP 512
              K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP
Sbjct: 465  QKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETP 524

Query: 513  DGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIG 571
            +G+ CGLVKNL +   +S  +  EPI   L   GME L D    +     +VFV+G W+G
Sbjct: 525  EGQACGLVKNLSLMSCISVGTSSEPILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVG 584

Query: 572  VCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVV-------- 623
              ++    V  +R  RRR ++  +V I RD  + E +IF DAGR+ RPL +V        
Sbjct: 585  THREPAHLVDTMRNLRRRGDISPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDAESET 644

Query: 624  --------ENMGKIKSLE---------GKNYTFQALLDHGIIELVGTEEEEDCCTAWGIK 666
                    EN+ K+ + E           +Y++ +L++ GI+E V  EEEE    A   +
Sbjct: 645  KGELKLKKENVHKLINAEYDDFGDDPDSLSYSWSSLVNDGIVEYVDAEEEETIMIAMTPE 704

Query: 667  YL------LKDIEDK---------------KPI----KFTHCELDMSFLLGLSCGIIPFA 701
             L      L + E K               KP      FTHCE+  S +LG++  IIPF 
Sbjct: 705  DLETSRSTLSETEQKDMQLEEQEVDPAKRIKPTLGLHTFTHCEIHPSMILGVAASIIPFP 764

Query: 702  NHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYG 761
            +H+ + R  YQS     QA+G   TN ++R+DT+++ L+YPQ+PL  T   +        
Sbjct: 765  DHNQSPRNTYQS-AMGKQAMGVFLTNYAVRMDTMANILYYPQKPLATTRSME-------- 815

Query: 762  HNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKE 821
                L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   RSY  +++ ++
Sbjct: 816  ---YLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSY-MDLEKRQ 871

Query: 822  MQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---------- 871
                  + +       ++ + G  + LDDDG    G  +   DI+IGK            
Sbjct: 872  GMKALETFEKPTRSDTLRLRHGTYEKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDAEELG 931

Query: 872  -----DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQ 926
                  +  D S  L+ TE G+V +V+L++N DG  F  V +R  + P +GDKF+S HGQ
Sbjct: 932  QRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKIPQIGDKFASRHGQ 991

Query: 927  KGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGL 986
            KG +G     E+ PFT QG+VPD++INPHA PSR T   L+E  L K +++L     SGL
Sbjct: 992  KGTIGVTYRHEDMPFTSQGVVPDLIINPHAIPSRMTVAHLIECLLSK-VSSL-----SGL 1045

Query: 987  KRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSE 1046
            +  A+PF   + +A+++ L   G+   G E +Y+G TG+ + + +F GPT+YQRL HM +
Sbjct: 1046 EGDASPFTDVTAEAVSKLLREHGYQSRGFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVD 1105

Query: 1047 DKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQM 1106
            DK+  R  GPV  LTRQPV  R R GG++FGEMERDC+IAHGAA  L ERL   SD++++
Sbjct: 1106 DKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRV 1165

Query: 1107 HICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITL 1166
            H+C  C      +  V+   +K +   CR C +  +I + ++PY AKLL QEL +M I+ 
Sbjct: 1166 HVCGICG-----LMSVIANLKKNQFE-CRSCKNKTNIYQIHIPYAAKLLFQELMAMNISP 1219

Query: 1167 KFDTE 1171
            +  TE
Sbjct: 1220 RLYTE 1224


>gi|396481244|ref|XP_003841192.1| similar to DNA-dependent RNA polymerase II second largest subunit
            [Leptosphaeria maculans JN3]
 gi|312217766|emb|CBX97713.1| similar to DNA-dependent RNA polymerase II second largest subunit
            [Leptosphaeria maculans JN3]
          Length = 1360

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/1280 (34%), Positives = 641/1280 (50%), Gaps = 185/1280 (14%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPG--YDPSKKGEG--EW 81
            C     SFF+  GLVS Q++SY+EF +N +Q      G  I+E    YDP++      + 
Sbjct: 124  CWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGSVILEQNTPYDPNEDENPIIKR 183

Query: 82   RYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQV-------- 133
            RY  + FG+V L +P+   G+G     ++P  ARL+N+TYS  M   +  ++        
Sbjct: 184  RY-EITFGRVYLARPTHTEGDGTTVQ-LYPHEARLRNLTYSGAMLADISNRIMVAREHNA 241

Query: 134  ------------YTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMK 181
                        YT    T  +++  RE    +E   +    + IG++PVM++S+LC ++
Sbjct: 242  MVEGEDDDLDGGYTAGGATQIRWE--REDMPGEE---EAAARVFIGKLPVMLRSELCHLR 296

Query: 182  GVEKGD------CDFDHGGYFIIKGAEKVFVAQEQICLKRLWV----SNSMGWTVAYKSE 231
                 D      C +D GGYF+I G+EKV +AQE+     + V       + W    +S 
Sbjct: 297  NQSDADLFALNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGPIPWIAEIRSA 356

Query: 232  -NKRNRLIVRLVDMSKFEDIKGGEKV------LSVYFLSTEIPIWILFFALGVSSDKEIV 284
              K  RLI           + GG++V       ++ ++ +EIP+ I+F ALG+ SD+EI+
Sbjct: 357  VEKGTRLISSFTIKWAENSLAGGKRVPGPFAYATLPYVKSEIPMAIVFRALGIVSDEEIL 416

Query: 285  NLIDFTCEDCSILNILFASIHDADNKCD-----EFRKGRNA--------LKYVDKLIKGT 331
            + I +   D  +L +L  SI +     D     +F   R A        LK+   +++  
Sbjct: 417  SHIVYDRTDTQMLELLKPSIEEGSVVQDRESALDFIARRGAQQATKDRRLKFARDIMQ-R 475

Query: 332  TFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLEL 391
             F P  S +E  +T          +KA F GYM+  LLQ   GRR  D+RD F  KRL+L
Sbjct: 476  EFLPHISQKEGQDT----------RKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDL 525

Query: 392  AGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWS 451
            AG L+    ++      K + K LQR +  ++    ++  + ASI+TNGL  + +TG W 
Sbjct: 526  AGPLIANLFRILFLKLTKDVFKYLQRCVESNQDFN-VQMAVKASIITNGLKYSLATGNWG 584

Query: 452  HPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLST 511
               K     +G+   L R     TL  LRRT   V   GK+   R  H SHWG +C   T
Sbjct: 585  DQKKAASAKAGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAET 644

Query: 512  PDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWI 570
            P+G+ CGLVKNL +   VS  S   PI + +    M+ L +          K+FV+G W+
Sbjct: 645  PEGQACGLVKNLSLMCYVSVGSDASPIIDFMTQRNMQLLEEYDQNQSPDATKIFVNGVWV 704

Query: 571  GVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKI- 629
            GV  +    VS ++  RR   L  ++ + RD    E +IF DAGR++RPL V+EN  +  
Sbjct: 705  GVHSNPHQLVSVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVIENDIRKP 764

Query: 630  ------------------------------KSLEGKNYTFQALLDHGIIELVGTEEEEDC 659
                                          + +    Y ++ L+  G+IE +  EEEE  
Sbjct: 765  NRHQLIFTKEISRKLTYEQETQDQRQGWSEEDIAAATYGWKGLIQDGVIEYLDAEEEETA 824

Query: 660  CT--------AW---------------GIKYLLKDIEDKKPIK---FTHCELDMSFLLGL 693
                      AW                 K+ L  I+ K   +   +THCE+  + +LG+
Sbjct: 825  MITFSPEDLDAWRDMKTGRAPDERRLKDPKFRLSSIKPKPDTRVHAYTHCEIHPAMILGI 884

Query: 694  SCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISD 753
               IIPF +H+ + R  YQS     QA+G   TN ++R++T+ + L+YPQ+PL  T   +
Sbjct: 885  CASIIPFPDHNQSPRNTYQS-AMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSME 943

Query: 754  CLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSY 813
                        L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y
Sbjct: 944  -----------YLKFRELPAGQNAIVAIATYGGYNQEDSVIMNQSSIDRGLFRSLFYRAY 992

Query: 814  KAEVDNKEMQVKRRSSDDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDIVI 867
                     Q KR   + +  F K      ++ K G  D LDDDG    G  +   DI+I
Sbjct: 993  TE-------QEKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIII 1045

Query: 868  GKYADSGADH---------------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVR 912
            GK A    D                S  L+ TE G+V +V+ ++N +G  F  V  R  +
Sbjct: 1046 GKTAPIATDAQELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTK 1105

Query: 913  SPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALG 972
             P +GDKF+S HGQKG +G    QE+ PF+ +G+ PD++INPHA PSR T   L+E  L 
Sbjct: 1106 VPQIGDKFASRHGQKGTIGITYRQEDMPFSREGLTPDLIINPHAIPSRMTIAHLVECLLS 1165

Query: 973  KGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIF 1032
            K       G   G +  ATPF   +VD I+E L   G+ K G E +Y+G TG+ +R+ IF
Sbjct: 1166 K------VGAIEGREGDATPFTDITVDQISEILESKGYQKRGFEIMYNGHTGKKMRTQIF 1219

Query: 1033 IGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAAN 1092
            +GPT+YQRL HM +DK+  R  GP+  LTRQPV  R R GG++FGEMERDC+IAHGAAA 
Sbjct: 1220 LGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAF 1279

Query: 1093 LHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPY-CRICDSGDDIVKANVPYG 1151
            L ERLFT+SD+Y +H+C  C  ++ + Q         +G Y CR C +   I + ++PY 
Sbjct: 1280 LKERLFTVSDAYTVHVCDICGLMSPIAQ-------LKKGQYECRPCQNKTRISQIHIPYA 1332

Query: 1152 AKLLCQELFSMGITLKFDTE 1171
            AKLL QEL +M I  +  T+
Sbjct: 1333 AKLLFQELLAMNIATRMFTD 1352


>gi|303273466|ref|XP_003056094.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462178|gb|EEH59470.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1172

 Score =  649 bits (1675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1208 (35%), Positives = 642/1208 (53%), Gaps = 128/1208 (10%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQK-AFDSFGETIVEP--GYDPSKKGEGEWRYA-SMR 87
            SFF E GL   Q++S+NEFI++ +Q+   D      +EP   + P ++GEG  +    + 
Sbjct: 24   SFFEEKGLARQQLDSFNEFIQHAMQEIVVDEMSSFELEPEQQHVPGEEGEGGEKKTYKIS 83

Query: 88   FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
            F Q+ L KP     +G     +FP+ ARL+N+TYS+ + V ++  V T   VT D  KT 
Sbjct: 84   FKQIYLSKPMVTEADGMTS-TLFPKEARLRNLTYSAPLYVDMEKTVTT---VTLDSQKTE 139

Query: 148  REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGA 201
              + I K         + IG++P+M++S+ C +         E G+C +D GGYFII G+
Sbjct: 140  EVEKINK---------VFIGKVPIMLRSEYCSLHDHTDKELTELGECPYDEGGYFIINGS 190

Query: 202  EKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKR-----NRLIVRLVDMSKFEDIK 251
            EKV +AQE++    ++V      +   W    +S  +      +  + R++  S    ++
Sbjct: 191  EKVLIAQEKMSSNHVYVFKKRQPSKYMWVAECRSSPESGARAASACVARMLH-SPGTKME 249

Query: 252  GGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA---- 307
             G   +++ ++ T+IP++++F ALG  +DK+I+  I +   D   + +L  SI +A    
Sbjct: 250  PGCIRVTLPYIRTDIPLFVVFRALGFVADKDILEHIVYDFNDHDAMELLRPSIEEALPIQ 309

Query: 308  --DNKCDEFRKGRNA--------LKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQK 357
                  D   K  +A        +KY   +++    P     EEC             +K
Sbjct: 310  SKKVALDYIGKRGSAVGVSREKRIKYAQDILQKELLPHVGVDEEC-----------ETRK 358

Query: 358  ARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQR 417
            A +LGY+V  LL    GRR  D+RD F NKR++LAG L        IA   +++ + L +
Sbjct: 359  AYYLGYIVHRLLLCALGRRNEDDRDHFGNKRMDLAGPL--------IAILFRQLFRKLTK 410

Query: 418  D--LYGDRTV---RPIEYYL--DASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRA 470
            D  LY  R V   + I+  L   A  +T+GL  + +TG W     +  R +G+   L R 
Sbjct: 411  DVRLYCQRCVDSGKEIQLTLAVKAKTITSGLKYSLATGNWGAQGAQDIR-AGVSQVLNRL 469

Query: 471  NPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVS 530
            +   TL  LRR    +   GK+   R  H SHWG +C   TP+G+ CGLVKNL +  LVS
Sbjct: 470  SFSSTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMVCPAETPEGQACGLVKNLSLMALVS 529

Query: 531  T-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRR 589
              S   P+ E L    ME L + +   +    K+FV+G W+GV +D    V  LR  RR+
Sbjct: 530  VGSPSSPVLEFLEEWTMENLEEISPSVISHATKIFVNGVWVGVHRDPADLVRTLRELRRK 589

Query: 590  KELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE---------NMGKIKSLEGKNYTFQ 640
             ++ T+V I  D    E+R++ D GR +RPL +VE         N+  ++  +   +T+ 
Sbjct: 590  VDITTEVGIVHDIRLQELRLYTDYGRCIRPLFIVEDQRMKIKKRNIEMLQEKDITGFTWN 649

Query: 641  ALLDHGIIELVGTEEEEDCCTAWGIK-----YLLKDIEDKKPIKFTHCELDMSFLLGLSC 695
             L+  G IE V TEEEE    +  I+      LL + E      +THCE+  S +LG+  
Sbjct: 650  DLVSSGCIEYVDTEEEETTMISMTIEDLVQARLLANNETSVQHMYTHCEIHPSMILGICG 709

Query: 696  GIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCL 755
             IIPF +H+ + R  YQS     QA+G   TN  +R+DTL++ LFYPQ+PL  T   +  
Sbjct: 710  SIIPFPDHNQSPRNTYQS-AMGKQAMGMYVTNFQLRMDTLAYVLFYPQKPLVTTRAME-- 766

Query: 756  GKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKA 815
                  H H     EL  G N +V +  + GYNQEDS++MN++S++RG+FRS   RS+K 
Sbjct: 767  ------HLHFR---ELPAGVNVVVGIMCYTGYNQEDSVIMNQSSIDRGLFRSIFYRSFKD 817

Query: 816  EVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---- 871
            E + K+  + +   +       +  + G    LD DG    G  +   DI+IGK +    
Sbjct: 818  E-EKKQGSLTKEDLECPSPETTLGMRHGTYGKLDKDGLICPGTRVSGEDIIIGKTSPLPD 876

Query: 872  -DSGA--------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSS 922
             D  A        D S  +K++E G++ +V+L++ND G  F  + +R  R+P +GDKFSS
Sbjct: 877  DDPSAASNRFTKRDCSTGMKNSETGIIDQVLLTTNDQGLRFVKIRVRSCRTPQVGDKFSS 936

Query: 923  MHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGI 982
             HGQKG +G   +QE+ PFT +G+VPDI++NPHA PSR T GQL+E  +GK  A +GK  
Sbjct: 937  RHGQKGTIGMTYTQEDMPFTCEGVVPDIIVNPHAIPSRMTIGQLVECLMGKVAAMMGK-- 994

Query: 983  CSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLI 1042
                +  ATPF   +V+ I++ LH+ G+ K G E +Y+G TG  + + IF+GPT+YQRL 
Sbjct: 995  ----EGDATPFTPVTVENISDMLHQCGYQKRGNEVMYNGHTGRKLEAKIFLGPTYYQRLK 1050

Query: 1043 HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSD 1102
            HM +DK+  R  GPV  LTRQP+  R R GG++FGEMERDC+I+HGAAA L ERL   SD
Sbjct: 1051 HMVDDKIHSRGRGPVQILTRQPMEGRSRDGGLRFGEMERDCIISHGAAAFLKERLMDQSD 1110

Query: 1103 SYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSM 1162
            +Y++H+C+ C  +A      V   +      C+       +V+  +PY  KLL QEL SM
Sbjct: 1111 AYRVHVCQTCGLIA------VANLKNQTFECCKNPSERMKVVQVLLPYACKLLFQELMSM 1164

Query: 1163 GITLKFDT 1170
             +  +  T
Sbjct: 1165 AVAPRLVT 1172


>gi|390604597|gb|EIN13988.1| DNA-dependent RNA polymerase II second largest subunit [Punctularia
            strigosozonata HHB-11173 SS5]
          Length = 1247

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/1251 (33%), Positives = 648/1251 (51%), Gaps = 143/1251 (11%)

Query: 19   EEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGE 78
            EE  +  C     SFF++ GLV  Q++S++EF++N +Q+  D   + I++     +    
Sbjct: 30   EEITQEDCWTVISSFFDQKGLVRQQLDSFDEFVQNTMQELVDENSDLILDQADQHTGSAT 89

Query: 79   GEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKR 138
               R   ++FGQ+ L +P+    +G     +FP+ ARL+N+TY++ + ++++ +    + 
Sbjct: 90   DMTRRYEIKFGQIYLSRPTVTEADGS-VMPVFPQEARLRNLTYNAPLYIEMRKRTLIGR- 147

Query: 139  VTSDKFKTGREQYIQKEV--LSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDF 190
               D      +   Q+E    ++++  + IG++P+M++S  C +  + + D      C +
Sbjct: 148  --EDPEGAPGDVIWQEEPGDAAEDSRKVWIGKVPIMLRSTFCILHDIPENDLFDLNECPY 205

Query: 191  DHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKRNRLIVRLVDMS 245
            D GGYFII G+EKV +AQE++    ++V      + + +    +S  ++    +    + 
Sbjct: 206  DSGGYFIINGSEKVLIAQERMATNHVYVFAKAQPSPISFLAEIRSAVEKGGKTISQFQVK 265

Query: 246  KFEDIKGGEKVL------SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNI 299
             +   +  E+ L      ++ ++  +IPIW++F ALGV SD++I+  I +  +D  +L +
Sbjct: 266  MY--TRNQERSLGNLIKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEM 323

Query: 300  LFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLH 352
            L   I D     D       AL ++    +GTT   G S E       E +   + P + 
Sbjct: 324  LKPCIQDGFAIQDR----EIALDFIGN--RGTT--TGLSKERRLRYAQEILQKEMLPHVS 375

Query: 353  ----GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHAR 408
                   +KA F GYM+  LL A   RR+ D+RD F  KRL+LAG LL    ++      
Sbjct: 376  MAEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLT 435

Query: 409  KRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLG 468
            K + + LQ+ +   +    +   +  + +TNGL  + +TG W    K     +G+   L 
Sbjct: 436  KDVYRYLQKCIETGKQFN-LSLAVKHNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLN 494

Query: 469  RANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGL 528
            R     TL  LRR    +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   
Sbjct: 495  RYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMAT 554

Query: 529  VST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKR 587
            +S  SI  P+ E L   G+E L ++A  S     KVFV+G W+GV +D L+ V  +++ R
Sbjct: 555  ISVGSISAPVIEFLEEWGLESLEENAHSSTPCT-KVFVNGVWMGVHRDPLNLVKTIKKLR 613

Query: 588  RRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENM------GKIKSLEGKN----- 636
            R+ ++  +  + RD  + E+RI  DAGR+ RPL +VEN         I+ L   N     
Sbjct: 614  RKDDISPETSVVRDIRERELRISTDAGRVCRPLFIVENQQLVLKKSHIEKLHKHNTEPVL 673

Query: 637  ------------------YTFQALLDHGIIELVGTEEEED---CCTAWGIKYL-LK---- 670
                              Y F  L+  G+IE +  EEEE    C T   ++   LK    
Sbjct: 674  DDAGAPTFDENGKQRFFQYQFDELVKEGVIEYLDAEEEETVMICMTPEDLENARLKQQGH 733

Query: 671  -------DIEDKKPIK-------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKH 716
                   D +    IK       +THCE+  S +LG+   IIPF +H+ + R  YQS   
Sbjct: 734  DPSQDDPDFDPAARIKTGTQAHLWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS-AM 792

Query: 717  SSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQN 776
              QA+G   TN  +R+DT+++ L+YPQ+PL  T   +            L   EL  GQN
Sbjct: 793  GKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSME-----------YLKFRELPAGQN 841

Query: 777  AIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFG 836
            AIVA+  + GYNQEDS++MN++S++RG+FRS + RSY  +++ K    +    +      
Sbjct: 842  AIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSMYFRSY-MDMEKKSGIQQLEEFEKPTRDT 900

Query: 837  KIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---------------DSGADHSIKL 881
             ++ K G  D L+DDG    G N+   DI+IGK A                +  D S  L
Sbjct: 901  TLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRGHTRRDVSTPL 960

Query: 882  KHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPF 941
            K TE+G V +V++++N +G+ F  V +R  R P +GDKF+S HGQKG +G    QE+ PF
Sbjct: 961  KSTEQGTVDQVLITTNSEGQKFVKVRIRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPF 1020

Query: 942  TIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAI 1001
            T +GI PDI+INPHA PSR T G L+E  L K    +G       +  ATPF   +V+++
Sbjct: 1021 TAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIGN------EGDATPFTDLTVESV 1074

Query: 1002 TEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLT 1061
            ++ L + G+   G E +Y G TG  +++ I++GPT+YQRL HM +DK+  R  GPV  LT
Sbjct: 1075 SQFLRQRGYQSRGLEVMYHGHTGRKLQAQIYLGPTYYQRLKHMVDDKIHSRARGPVQILT 1134

Query: 1062 RQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKC--KNVANVI 1119
            RQPV  R R GG++FGEMERDC+I+HG AA L ERLF  SD+Y++H+C  C    +AN+ 
Sbjct: 1135 RQPVEGRSRDGGLRFGEMERDCMISHGIAAFLKERLFEASDAYRLHVCDICGLTAIANLK 1194

Query: 1120 QRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
            ++            CR C +  +  +  +PY AKLL QEL SM I  +  T
Sbjct: 1195 KQTFE---------CRACKNKTECSQLYIPYAAKLLFQELQSMNIAARLYT 1236


>gi|344304446|gb|EGW34678.1| DNA-dependent RNA polymerase II [Spathaspora passalidarum NRRL
            Y-27907]
          Length = 1238

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/1243 (34%), Positives = 646/1243 (51%), Gaps = 140/1243 (11%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYAS 85
            C     SFF E GLVS Q++S++EFI+  +Q+        I++     + + + E R   
Sbjct: 31   CWTVISSFFQEKGLVSQQLDSFDEFIETTIQELVWEDSHLILDQPAQHTSESDHENRRYE 90

Query: 86   MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
            + FG++ + KPS   G+G   H MFP+ ARL+N+TYSS + V +  +V+   +   +K K
Sbjct: 91   ITFGKIYISKPSQTEGDGT-THPMFPQEARLRNLTYSSPLYVDMTKKVF---KSDDNKRK 146

Query: 146  TGRE-QYIQKEVL-SDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFI 197
               E  +I+++V   D  T + +G++P+M++S  C ++ +      E  +C +D GGYF+
Sbjct: 147  ENNELDWIEEKVEDEDPRTKVYLGKVPIMLRSKFCMLRDLGEHDFYELKECPYDMGGYFV 206

Query: 198  IKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE-----NKRNRLIVRLVDMSKFEDIK 251
            I G+EKV +AQE+     + V   +    +++ +E      K +RLI  +       D K
Sbjct: 207  INGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSAIEKGSRLISSMQIKLYGRDEK 266

Query: 252  GGEK---VLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFAS----- 303
            G        ++ ++  +IPI I+F ALGV  D +I+  I +   D  +L +L        
Sbjct: 267  GVSARTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCVEEGF 326

Query: 304  -IHDADNKCDEF-RKG------RNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTK 355
             I + +   D   R+G         ++Y   +++     P  + EE   T          
Sbjct: 327  VIQEREVALDFIGRRGVLGIRREKRIQYAKDILQKELL-PNITQEEGFET---------- 375

Query: 356  QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKAL 415
            +KA FLGYMV  LL     R++ D+RD F  KRL+LAG LL    ++      K +   +
Sbjct: 376  RKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYM 435

Query: 416  QRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQT 475
            QR +  D+    +   + +  +T+GL  + +TG W    K     +G+   L R     T
Sbjct: 436  QRCVENDKEFN-LTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSST 494

Query: 476  LVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SIL 534
            L  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  +  
Sbjct: 495  LSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTPS 554

Query: 535  EPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPT 594
            EPI   L   GME L D    +     +VFV+G W+G  +D ++ V  +R  RRR ++  
Sbjct: 555  EPILYFLEEWGMESLEDYVPSNSPDSTRVFVNGVWVGTHRDPVNLVDTMRSLRRRGDISP 614

Query: 595  QVEIKRDELQSEVRIFMDAGRILRPLLVV------ENMGKIK------------------ 630
            +V I RD  + E +IF DAGR+ RPL +V      E  G +K                  
Sbjct: 615  EVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDSESETKGDLKLQKEHVLKLLNSEYDDYD 674

Query: 631  SLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWG---------------IKYLLKDIEDK 675
              EG N+T  +L++ GI+E V  EEEE    A                 IK +  + ++ 
Sbjct: 675  GDEGYNWT--SLVNDGIVEYVDAEEEETIMIAMTPEDLEASKNTLSQTQIKAMQVEEQEL 732

Query: 676  KPIK------------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGF 723
             P K            FTHCE+  S +LG++  IIPF +H+ + R  YQS     QA+G 
Sbjct: 733  DPAKRIKPVFSSATHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQS-AMGKQAMGV 791

Query: 724  PTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNV 783
              TN S+R+DT+++ L+YPQ+PL  T   +            L   EL  GQNAIVA+  
Sbjct: 792  FLTNYSVRMDTMANILYYPQKPLATTRSME-----------FLKFRELPAGQNAIVAIAC 840

Query: 784  HLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIG 843
            + GYNQEDS++MN++S++RG+FRS   RSY  +++ ++      + +       ++ K G
Sbjct: 841  YSGYNQEDSMIMNQSSIDRGLFRSLFFRSY-MDLEKRQGMKALETFEKPSRSDTLRLKHG 899

Query: 844  RVDSLDDDGFPFIGANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGM 888
              + LDDDG    G  +   DI+IGK                  +  D S  L+ TE G+
Sbjct: 900  TYEKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGI 959

Query: 889  VQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVP 948
            V +V+L++N DG  F  V +R  + P +GDKF+S HGQKG +G     E+ PFT QGIVP
Sbjct: 960  VDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAQGIVP 1019

Query: 949  DIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRA 1008
            D++INPHA PSR T   L+E  L K ++AL     SGL+  A+PF   + +A++  L   
Sbjct: 1020 DLIINPHAIPSRMTVAHLIECLLSK-VSAL-----SGLEGDASPFTDVTAEAVSRLLREH 1073

Query: 1009 GFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADR 1068
            G+   G E +Y+G TG+ + + +F GPT+YQRL HM +DK+  R  GPV  LTRQPV  R
Sbjct: 1074 GYQSRGFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGR 1133

Query: 1069 KRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRK 1128
             R GG++FGEMERDC+IAHGAA  L ERL   SD++++H+C  C      +  V+   +K
Sbjct: 1134 SRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGSCG-----LMSVIANLKK 1188

Query: 1129 VRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
             +   CR C +  +I + ++PY AKLL QEL +M I+ +  TE
Sbjct: 1189 NQFE-CRSCKNKTNIYQIHIPYAAKLLFQELMAMNISPRMYTE 1230


>gi|68475107|ref|XP_718439.1| hypothetical protein CaO19.10857 [Candida albicans SC5314]
 gi|68475648|ref|XP_718172.1| hypothetical protein CaO19.3349 [Candida albicans SC5314]
 gi|46439928|gb|EAK99240.1| hypothetical protein CaO19.3349 [Candida albicans SC5314]
 gi|46440204|gb|EAK99513.1| hypothetical protein CaO19.10857 [Candida albicans SC5314]
 gi|238879352|gb|EEQ42990.1| DNA-directed RNA polymerase II polypeptide 2 [Candida albicans WO-1]
          Length = 1234

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1269 (34%), Positives = 653/1269 (51%), Gaps = 144/1269 (11%)

Query: 3    SDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSF 62
            S D    DP     + E   +  C     SFF E GLVS Q++S++EF++  +Q+     
Sbjct: 2    SADESMADPYQYDSIDEPITQEDCWTVITSFFQEKGLVSQQLDSFDEFVETSIQELVWED 61

Query: 63   GETIV-EPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTY 121
               I+ +P    S+K     RY  + FG++ + KPS   G+G   H +FP+ ARL+N+TY
Sbjct: 62   SHLILDQPAQHTSEKDHENKRY-EITFGKIYISKPSQTEGDGS-THAVFPQEARLRNLTY 119

Query: 122  SSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMK 181
            SS + V +  +V+   +   +K K    ++IQ+E   D  T + +G++P+M++S  C ++
Sbjct: 120  SSPLYVDMTSKVF---KSDDNKRKDNELEWIQEEPDKDTETKVFLGKVPIMLRSKFCMLR 176

Query: 182  GV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE--- 231
             +      E  +C +D GGYF+I G+EKV +AQE+     + V   +    +++ +E   
Sbjct: 177  DLAEHEFYELKECPYDMGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRS 236

Query: 232  --NKRNRLIVRLVDMSKFEDIKG--GEKV-LSVYFLSTEIPIWILFFALGVSSDKEIVNL 286
               K +RLI  +       D KG  G  +  ++ ++  +IPI I+F ALGV  D +I+  
Sbjct: 237  AIEKGSRLISSMQIKLYGRDEKGVSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEH 296

Query: 287  IDFTCEDCSILNILFAS------IHDADNKCDEF-RKG------RNALKYVDKLIKGTTF 333
            I +   D  +L +L         I + +   D   R+G         ++Y   +++    
Sbjct: 297  ICYDANDWQMLEMLKPCVEEGFVIQEREVALDFIGRRGVLGIRREKRIQYAKDILQKELL 356

Query: 334  PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAG 393
             P  + EE   T          +KA FLGYMV  LL     R++ D+RD F  KRL+LAG
Sbjct: 357  -PNITQEEGFET----------RKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAG 405

Query: 394  ELLERELKVHIAHARKRMAKALQRDLY--GDRTVRPIEYYLDASILTNGLSRAFSTGAWS 451
             LL    ++      K +   +QR +   GD  V      + +  +T+GL  + +TG W 
Sbjct: 406  PLLANLFRILFKKLTKDIYNYMQRCVENGGDFNV---TLAVKSQTITDGLRYSLATGNWG 462

Query: 452  HPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLST 511
               K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   T
Sbjct: 463  EQRKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAET 522

Query: 512  PDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWI 570
            P+G+ CGLVKNL +   +S  +  EPI   L + G+E L D    +     +VFV+G W+
Sbjct: 523  PEGQACGLVKNLSLMTCISVGTPSEPILGFLRDYGLEVLEDYVPSNAPDSTRVFVNGVWV 582

Query: 571  GVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVV------E 624
            GV +D  + V  +R  RR  +L  +V I RD  + E +IF DAGR+ RPL +V      E
Sbjct: 583  GVHRDPAALVDFMRELRRSGDLSPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDNPDSE 642

Query: 625  NMGKIK--------------------SLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWG 664
              G++K                      E   YT+ +L+  GI+E V  EEEE    A  
Sbjct: 643  TKGELKITKEHVKQLLRSDELDEDDEDYENSRYTWSSLVADGIVEYVDAEEEETIMIAMT 702

Query: 665  ------------------IKYLLKDIEDKKPIK---------FTHCELDMSFLLGLSCGI 697
                              I+   ++++  K IK         +THCE+  S +LG++  I
Sbjct: 703  PDDVKASKNSVSESEQQKIQLEEQELDPGKRIKPTTSGNTHTYTHCEIHPSMILGVAASI 762

Query: 698  IPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGK 757
            IPF +H+ + R  YQS     QA+G   TN S+R+DT+++ L+YPQ+PL  T   +    
Sbjct: 763  IPFPDHNQSPRNTYQS-AMGKQAMGVFLTNYSVRMDTMANILYYPQKPLGTTRSME---- 817

Query: 758  PGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEV 817
                    L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   RSY  ++
Sbjct: 818  -------YLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSY-MDI 869

Query: 818  DNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA-- 875
            + ++      + +       ++ K G  + LD+DG    G  +   DI+IGK     A  
Sbjct: 870  EKRQGMKALETFEKPTRSDTLRLKHGTYEKLDEDGLIAPGVRVSGEDIIIGKTTPIPADA 929

Query: 876  -------------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSS 922
                         D S  L+ TE G+V +V+L++N DG  F  V +R  + P +GDKF+S
Sbjct: 930  EELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGSKFVKVRMRTTKVPQIGDKFAS 989

Query: 923  MHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGI 982
             HGQKG +G     E+ PFT +GIVPD++INPHA PSR T   L+E  L K +++L    
Sbjct: 990  RHGQKGTIGVTYRHEDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSK-VSSL---- 1044

Query: 983  CSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLI 1042
             SG +  A+PF   + + I+  L   G+   G E +Y+G TG+ + + +F GPT+YQRL 
Sbjct: 1045 -SGFEGDASPFTDVTTEQISTLLRDHGYQSRGFEVMYNGHTGKKLMAQVFFGPTYYQRLR 1103

Query: 1043 HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSD 1102
            HM +DK+  R  GPV  LTRQPV  R R GG++FGEMERDC+IAHGAA  L ERL   SD
Sbjct: 1104 HMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASD 1163

Query: 1103 SYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSM 1162
            ++++H+C  C  + +VI  +     K     CR C +  +I + ++PY AKLL QEL +M
Sbjct: 1164 AFRVHVCGMC-GLMSVIANL-----KKNQFECRSCKNKTNIYQIHIPYAAKLLFQELMAM 1217

Query: 1163 GITLKFDTE 1171
             I+ +  TE
Sbjct: 1218 NISPRLYTE 1226


>gi|241948201|ref|XP_002416823.1| DNA-dependent RNA polymerase II component, putative [Candida
            dubliniensis CD36]
 gi|223640161|emb|CAX44408.1| DNA-dependent RNA polymerase II component, putative [Candida
            dubliniensis CD36]
          Length = 1234

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/1269 (33%), Positives = 653/1269 (51%), Gaps = 144/1269 (11%)

Query: 3    SDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSF 62
            S D    DP     + E   +  C     SFF E GLVS Q++S++EF++  +Q+     
Sbjct: 2    SADESMADPYQYDSIDEPITQEDCWTVITSFFQEKGLVSQQLDSFDEFVETSIQELVWED 61

Query: 63   GETIV-EPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTY 121
               I+ +P    S+K     RY  + FG++ + KPS   G+G   H +FP+ ARL+N+TY
Sbjct: 62   SHLILDQPAQHTSEKDHENKRY-EITFGKIYISKPSQTEGDGS-THAVFPQEARLRNLTY 119

Query: 122  SSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMK 181
            SS + V +  +V+   +   +K K    ++IQ+E   D  T + +G++P+M++S  C ++
Sbjct: 120  SSPLYVDMTSKVF---KSDDNKRKDNELEWIQEEPDKDTETKVFLGKVPIMLRSKFCMLR 176

Query: 182  GV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE--- 231
             +      E  +C +D GGYF+I G+EKV +AQE+     + V   +    +++ +E   
Sbjct: 177  DLAEHEFYELKECPYDMGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRS 236

Query: 232  --NKRNRLIVRLVDMSKFEDIKG--GEKV-LSVYFLSTEIPIWILFFALGVSSDKEIVNL 286
               K +RLI  +       D KG  G  +  ++ ++  +IPI I+F ALGV  D +I+  
Sbjct: 237  AIEKGSRLISSMQIKLYGRDEKGVSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEH 296

Query: 287  IDFTCEDCSILNILFAS------IHDADNKCDEF-RKG------RNALKYVDKLIKGTTF 333
            I +   D  +L +L         I + +   D   R+G         ++Y   +++    
Sbjct: 297  ICYDANDWQMLEMLKPCVEEGFVIQEREVALDFIGRRGVLGIRREKRIQYAKDILQKELL 356

Query: 334  PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAG 393
             P  + EE   T          +KA FLGYMV  LL     R++ D+RD F  KRL+LAG
Sbjct: 357  -PNITQEEGFET----------RKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAG 405

Query: 394  ELLERELKVHIAHARKRMAKALQRDLY--GDRTVRPIEYYLDASILTNGLSRAFSTGAWS 451
             LL    ++      K +   +QR +   GD  V      + +  +T+GL  + +TG W 
Sbjct: 406  PLLANLFRILFKKLTKDIYNYMQRCVENGGDFNV---TLAVKSQTITDGLRYSLATGNWG 462

Query: 452  HPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLST 511
               K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   T
Sbjct: 463  EQRKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAET 522

Query: 512  PDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWI 570
            P+G+ CGLVKNL +   +S  +  EPI   L + G+E L D    +     +VFV+G W+
Sbjct: 523  PEGQACGLVKNLSLMTCISVGTPSEPILGFLRDYGLEVLEDYVPSNAPDSTRVFVNGVWV 582

Query: 571  GVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVV------E 624
            GV +D  + V  +R  RR  +L  +V I RD  + E +IF DAGR+ RPL +V      E
Sbjct: 583  GVHRDPAALVDFMRELRRSGDLSPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDNPESE 642

Query: 625  NMGKIK--------------------SLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWG 664
              G++K                      +   YT+ +L+  GI+E V  EEEE    A  
Sbjct: 643  TKGELKITKEHIKQLLRSDELDEDDEDYDNTRYTWSSLVADGIVEYVDAEEEETIMIAMT 702

Query: 665  ------------------IKYLLKDIEDKKPIK---------FTHCELDMSFLLGLSCGI 697
                              I+   ++++  K IK         +THCE+  S +LG++  I
Sbjct: 703  PDDVKASKDSVSESEQQKIQLEEQELDPGKRIKPTTSGSTHTYTHCEIHPSMILGVAASI 762

Query: 698  IPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGK 757
            IPF +H+ + R  YQS     QA+G   TN S+R+DT+++ L+YPQ+PL  T   +    
Sbjct: 763  IPFPDHNQSPRNTYQS-AMGKQAMGVFLTNYSVRMDTMANILYYPQKPLGTTRSME---- 817

Query: 758  PGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEV 817
                    L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   RSY  ++
Sbjct: 818  -------YLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSY-MDI 869

Query: 818  DNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA-- 875
            + ++      + +       ++ K G  + LD+DG    G  +   DI+IGK     A  
Sbjct: 870  EKRQGMKALETFEKPTRSDTLRLKHGTYEKLDEDGLIAPGVRVSGEDIIIGKTTPIPADA 929

Query: 876  -------------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSS 922
                         D S  L+ TE G+V +V+L++N DG  F  V +R  + P +GDKF+S
Sbjct: 930  EELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFAS 989

Query: 923  MHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGI 982
             HGQKG +G     E+ PFT +GIVPD++INPHA PSR T   L+E  L K +++L    
Sbjct: 990  RHGQKGTIGVTYRHEDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSK-VSSL---- 1044

Query: 983  CSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLI 1042
             SG +  A+PF   + + I+  L   G+   G E +Y+G TG+ + + +F GPT+YQRL 
Sbjct: 1045 -SGFEGDASPFTDVTTEQISTLLRDHGYQSRGFEVMYNGHTGKKLMAQVFFGPTYYQRLR 1103

Query: 1043 HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSD 1102
            HM +DK+  R  GPV  LTRQPV  R R GG++FGEMERDC+IAHGAA  L ERL   SD
Sbjct: 1104 HMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASD 1163

Query: 1103 SYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSM 1162
            ++++H+C  C  + +VI  +     K     CR C +  +I + ++PY AKLL QEL +M
Sbjct: 1164 AFRVHVCGMC-GLMSVIANL-----KKNQFECRSCKNKTNIYQIHIPYAAKLLFQELMAM 1217

Query: 1163 GITLKFDTE 1171
             I+ +  TE
Sbjct: 1218 NISPRLYTE 1226


>gi|150951109|ref|XP_001387366.2| DNA-dependent RNA polymerase II [Scheffersomyces stipitis CBS 6054]
 gi|149388327|gb|EAZ63343.2| DNA-dependent RNA polymerase II [Scheffersomyces stipitis CBS 6054]
          Length = 1232

 Score =  648 bits (1672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1268 (33%), Positives = 660/1268 (52%), Gaps = 141/1268 (11%)

Query: 1    MDSDDNGFTDPTSLCDLG--EEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKA 58
            MDS D+ +     L D G  +      C     SFF E GLVS Q++S++EFI+  +Q+ 
Sbjct: 1    MDSQDDPY-----LYDDGDAQSITPEDCWTVISSFFQEKGLVSQQLDSFDEFIETTIQEL 55

Query: 59   FDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQN 118
                   I++     + + + E R   + FG++ + KP    G+G   H MFP+ ARL+N
Sbjct: 56   VWEDSHLILDQPAQHTSEDDHENRRYEITFGKIYISKPMQTEGDGTT-HPMFPQEARLRN 114

Query: 119  MTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTN-IIIGRIPVMVKSDL 177
            +TYSS + V +  +V+   +   ++ K    ++++++V  +E    + +G++P+M++S  
Sbjct: 115  LTYSSPLYVDMTKKVF---KSDDNRRKENELEWVEEKVEDEEPQQKVFLGKVPIMLRSKF 171

Query: 178  CWMKGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKS 230
            C ++ +      E  +C +D GGYF+I G+EKV +AQE+     + V   +    +++ +
Sbjct: 172  CMLRDLGEHEFFELKECPYDMGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVA 231

Query: 231  E-----NKRNRLIVRLVDMSKFEDIKG--GEKV-LSVYFLSTEIPIWILFFALGVSSDKE 282
            E      K +RLI  +       D KG  G  +  ++ ++  +IPI I+F ALGV  D +
Sbjct: 232  EIRSALEKGSRLISSMQIKLYGRDEKGTSGRTIKATLPYIKEDIPIVIVFRALGVVPDGD 291

Query: 283  IVNLIDFTCEDCSILNILFAS------IHDADNKCDEF-RKGRNALKYVDKLIKGTTFPP 335
            I+  I +   D  +L +L         I + +   D   R+G   ++   ++        
Sbjct: 292  ILEHICYDANDWQMLEMLKPCVEEGFVIQEREVALDFIGRRGVLGIRREKRI-------- 343

Query: 336  GESTEECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLEL 391
             +  ++ +   L P++   +    +KA FLGYMV  LL     R++ D+RD F  KRL+L
Sbjct: 344  -QYAKDILQKELLPNITQEEGFESRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDL 402

Query: 392  AGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWS 451
            AG LL    ++      K +   +QR +  D+    +   + +  +T+GL  + +TG W 
Sbjct: 403  AGPLLANLFRILFRKLTKDIYNYMQRCVENDKEFN-LTLAVKSQTITDGLRYSLATGNWG 461

Query: 452  HPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLST 511
               K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   T
Sbjct: 462  EQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAET 521

Query: 512  PDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWI 570
            P+G+ CGLVKNL +   +S  +  EPI   L   GME L D    +     +VFV+G W+
Sbjct: 522  PEGQACGLVKNLSLMTCISVGTPSEPILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWV 581

Query: 571  GVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVV------E 624
            G  +D  + V  +R  RRR ++  +V I RD  + E +IF DAGR+ RPL +V      E
Sbjct: 582  GTHRDPANLVDTMRSLRRRGDISPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDEAESE 641

Query: 625  NMGKIK--------------------SLEGKNYTFQALLDHGIIELVGTEEEEDCCTAW- 663
              G +K                      EG +YT+ +L++ G++E V  EEEE    A  
Sbjct: 642  TKGDLKLQKEHVHNLLSSEYDEYEDPDNEGASYTWSSLINDGVVEYVDAEEEETIMIAMT 701

Query: 664  -----GIKYLLKDIEDK--------------KPI------KFTHCELDMSFLLGLSCGII 698
                   K  + +  DK              KP        FTHCE+  S +LG++  II
Sbjct: 702  PEDLEASKNAITETPDKSVLEEQELDPAKRIKPTFSAATHTFTHCEIHPSMILGVAASII 761

Query: 699  PFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKP 758
            PF +H+ + R  YQS     QA+G   TN S+R+DT+++ L+YPQ+PL  T         
Sbjct: 762  PFPDHNQSPRNTYQS-AMGKQAMGVFLTNYSVRMDTMANILYYPQKPLATTR-------- 812

Query: 759  GYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVD 818
                 H+  R EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y  +++
Sbjct: 813  --AMEHLKFR-ELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRTY-MDLE 868

Query: 819  NKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA------- 871
             ++      + +       ++ K G  + LDDDG    G  +   DI+IGK         
Sbjct: 869  KRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDTE 928

Query: 872  --------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSM 923
                     +  D S  L+ TE G+V +V+L++N DG  F  V +R  + P +GDKF+S 
Sbjct: 929  ELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKIPQIGDKFASR 988

Query: 924  HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGIC 983
            HGQKG +G     E+ PFT QGIVPD++INPHA PSR T   L+E  L K +++L     
Sbjct: 989  HGQKGTIGVTYRHEDMPFTAQGIVPDLIINPHAIPSRMTVAHLIECLLSK-VSSL----- 1042

Query: 984  SGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIH 1043
            SGL+  A+PF   + +A+++ L   G+   G E +Y+G TG+ + + +F GPT+YQRL H
Sbjct: 1043 SGLEGDASPFTDVTAEAVSKLLREHGYQSRGFEVMYNGHTGKKLMAQVFFGPTYYQRLRH 1102

Query: 1044 MSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDS 1103
            M +DK+  R  GPV  LTRQPV  R R GG++FGEMERDC+IAHGAA  L ERL   SD+
Sbjct: 1103 MVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDA 1162

Query: 1104 YQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMG 1163
            +++H+C  C      +  V+   +K +   CR C +  +I + ++PY AKLL QEL +M 
Sbjct: 1163 FRVHVCGMCG-----LMTVIANLKKNQFE-CRSCKNKTNIYQIHIPYAAKLLFQELMAMN 1216

Query: 1164 ITLKFDTE 1171
            I+ +  TE
Sbjct: 1217 ISPRMYTE 1224


>gi|403214331|emb|CCK68832.1| hypothetical protein KNAG_0B03910 [Kazachstania naganishii CBS 8797]
          Length = 1220

 Score =  648 bits (1672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/1250 (34%), Positives = 641/1250 (51%), Gaps = 122/1250 (9%)

Query: 2    DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDS 61
            D D  GF D ++     + +          SFF E GLVS Q++S+N+F+   LQ     
Sbjct: 8    DEDPYGFEDESAPITAEDSW------TVISSFFREKGLVSQQLDSFNQFVDYTLQDIISE 61

Query: 62   FGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTY 121
                I+E     + + +   R   + FG++ + KP     +G   H ++P+ +RL+N+TY
Sbjct: 62   DSRLILEQLAQHTTEADNISRKYEISFGKIYVTKPMVNESDGV-THALYPQESRLRNLTY 120

Query: 122  SSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSD-ETTNIIIGRIPVMVKSDLCWM 180
            SS + V V+ + Y    V     K    + I +E   D E   + IGR+P+M++S  C++
Sbjct: 121  SSGLFVDVKKRTYEAIDVPGRDLKY---ELIAEESEDDSERGKVFIGRLPIMLRSKNCYL 177

Query: 181  KGVEKGD------CDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE-- 231
                + D      C FD GGYFII G+EKV +AQE+     + V   +    +++ +E  
Sbjct: 178  SDATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIR 237

Query: 232  ---NKRNRLIVRL-VDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLI 287
                K +R I  L V +   E         ++ ++  +IPI I+F ALGV  D EI+  I
Sbjct: 238  SALEKGSRFISTLQVKLYGREGSSSRTIKATLPYIKQDIPIVIIFRALGVIPDGEILEHI 297

Query: 288  DFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES-----TEEC 342
             +   D  +L +L   + D     D       AL ++ +  +GT     +       ++ 
Sbjct: 298  CYDVNDWQMLEMLKPCVEDGFVIQDR----ETALDFIGR--RGTALGIKKEKRIQYAKDI 351

Query: 343  MNTYLFP---SLHG-TKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLER 398
            +     P    L G   +KA FLGYM+  LL     R+  D+RD F  KRL+LAG LL +
Sbjct: 352  LQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLGQ 411

Query: 399  ELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTE 458
              K       K + + +QR +        ++  ++A  +T+GL  A +TG W    K   
Sbjct: 412  LFKTLFRKLTKDIFRYMQRTVEEAHDFN-MKLAINAKTITSGLKYALATGNWGEQKKAMS 470

Query: 459  RISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCG 518
              +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ CG
Sbjct: 471  SRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACG 530

Query: 519  LVKNLGVTGLVSTSI-LEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSL 577
            LVKNL +   +S      PI   L   G+E L D   +      +VFV+G W GV ++  
Sbjct: 531  LVKNLSLMSSISVGTDPMPIITFLSEWGLEPLEDYVPHQSPDATRVFVNGVWHGVHRNPA 590

Query: 578  SFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------------ 625
              +  LR  RR+ ++  +V + RD  + E++IF DAGR+ RPL +VE+            
Sbjct: 591  RLMETLRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDEALGHKELKVR 650

Query: 626  MGKIKSL-------------EGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDI 672
             G I  L             E   YT+ +LL+ G++E +  EEEE    A   + L   I
Sbjct: 651  KGHIAKLMATEYQDIEGGLDEADEYTWTSLLNEGLVEYIDAEEEETILIAMQPEDLEPVI 710

Query: 673  EDKKPI----------------KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKH 716
            E++ PI                 FTHCE+  S +LG++  IIPF +H+ + R  YQS   
Sbjct: 711  EEENPIDDMDPAKRIKASQNATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQS-AM 769

Query: 717  SSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQN 776
              QA+G   TN ++R+DT+++ L+YPQ+PL  T   +            L   EL  GQN
Sbjct: 770  GKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAME-----------YLKFRELPAGQN 818

Query: 777  AIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFG 836
            AIVA+  + GYNQEDS++MN++S++RG+FRS   RSY  +     M +   + +      
Sbjct: 819  AIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITE-TFEKPQRTN 877

Query: 837  KIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---------------DSGADHSIKL 881
             ++ K G  D LDDDG    G  +   DI+IGK                  S  D S  L
Sbjct: 878  TLRMKHGTYDKLDDDGLIAPGVRVSGEDIIIGKTTPISPDEEELGQRTAYHSKRDASTPL 937

Query: 882  KHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPF 941
            + TE G++ +V++++N DG  F  V +R  + P +GDKF+S HGQKG +G   S+E+ PF
Sbjct: 938  RSTENGIIDQVLVTTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYSREDMPF 997

Query: 942  TIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAI 1001
            T +GIVPD++INPHA PSR T   L+E  L K +AAL     SG +  A+PF   +V+ I
Sbjct: 998  TAEGIVPDLIINPHAIPSRMTVAHLIECLLSK-VAAL-----SGNEGDASPFTDITVEGI 1051

Query: 1002 TEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLT 1061
            ++ L   G+   G E +Y+G TG+ + + IF GPT+YQRL HM +DK+  R  GP+  LT
Sbjct: 1052 SKLLREHGYHSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLT 1111

Query: 1062 RQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQR 1121
            RQPV  R R GG++FGEMERDC+IAHGAAA L ERL   SDS+++HIC  C  + +VI +
Sbjct: 1112 RQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERLMEASDSFRVHICGNC-GLMSVIAK 1170

Query: 1122 VVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
            +     +     C+ C++  DI +  +PY AKLL QEL +M IT +  T+
Sbjct: 1171 LSHNQFE-----CKGCNNKIDIYQIRIPYAAKLLFQELMAMNITPRLYTD 1215


>gi|354544175|emb|CCE40898.1| hypothetical protein CPAR2_109360 [Candida parapsilosis]
          Length = 1228

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1243 (34%), Positives = 653/1243 (52%), Gaps = 141/1243 (11%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIV-EPGYDPSKKGEGEWRYA 84
            C     SFF E GLVS Q++S++EFI++ +Q+        I+ +P    S+K     RY 
Sbjct: 22   CWTVITSFFQEKGLVSQQLDSFDEFIESTIQELIWEDSHLILDQPAQHTSEKDSKNKRY- 80

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT---QKRVTS 141
             + FG++ + KPS   G+G   H MFP+ ARL+N+TYS+ + V +  +V+      RV  
Sbjct: 81   EITFGKMYISKPSQTEGDGT-THPMFPQEARLRNLTYSAPLYVDMSKKVFESDDNNRV-- 137

Query: 142  DKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGY 195
            D     +EQ +Q E   D  + + +G++P+MV+S  C ++ +      E  +C +D GGY
Sbjct: 138  DNELEWKEQIVQGE---DSDSQVYLGKVPIMVRSKFCMLRDLGEHEMYELKECPYDMGGY 194

Query: 196  FIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE-----NKRNRLIVRL-VDMSKFE 248
            F+I G+EKV +AQE+     + V   +    +++ +E      K +RLI  + + +   +
Sbjct: 195  FVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSAIEKGSRLISAMQIKLYGRD 254

Query: 249  DIKGGEKVL--SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFAS--- 303
            +     + +  ++ ++  +IPI I+F ALGV  D +I+  I +   D  +L +L      
Sbjct: 255  EKSSSARTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCVEE 314

Query: 304  ---IHDADNKCDEF-RKG------RNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHG 353
               I + +   D   R+G         ++Y   +++     P  + EE   T        
Sbjct: 315  GFVIQEREVALDFIGRRGVLGIRREKRIQYAKDILQKELL-PNITQEEGFET-------- 365

Query: 354  TKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAK 413
              +KA FLGYMV  LL     R++ D+RD F  KRL+LAG LL    ++      K +  
Sbjct: 366  --RKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYN 423

Query: 414  ALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPL 473
             +QR +  D+    +   + +  +T+GL  + +TG W    K     +G+   L R    
Sbjct: 424  YMQRCVENDKEFN-LTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYS 482

Query: 474  QTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-S 532
             TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  +
Sbjct: 483  STLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGT 542

Query: 533  ILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL 592
              EPI   L + G+E L D    +     +VFV+G W+GV ++  S V  +R  RR  ++
Sbjct: 543  PSEPISSFLRDWGLEPLEDYVPSNSPDATRVFVNGVWVGVHREPASLVDYMRDLRRNGDI 602

Query: 593  PTQVEIKRDELQSEVRIFMDAGRILRPLLVV------ENMGKIK------------SLEG 634
              +V I RD  + E++IF DAGR+ RPL +V      E  G +K            S +G
Sbjct: 603  SPEVSIIRDIREKELKIFTDAGRVYRPLFIVDDNPDSETKGDLKLKKEHVNRLLESSYDG 662

Query: 635  ----KNYTFQALLDHGIIELVGTEEEEDCCTAW------------------GIKYLLKDI 672
                 +YT+ +L+  GI+E V  EEEE    A                    ++   +++
Sbjct: 663  DEDEPSYTWSSLVREGIVEYVDAEEEETIMIAMTPDDLEASKSNLTETQQQDLQMEEQEL 722

Query: 673  EDKKPIK---------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGF 723
            +  K IK         FTHCE+  S +LG++  IIPF +H+ + R  YQS     QA+G 
Sbjct: 723  DPAKRIKPTGSSNTHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQS-AMGKQAMGV 781

Query: 724  PTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNV 783
              TN ++R+DT+++ L+YPQ+PL  T              H+  R EL  GQNAIVA+  
Sbjct: 782  FLTNYAVRMDTMANILYYPQKPLATTR----------AMEHLKFR-ELPAGQNAIVAIAC 830

Query: 784  HLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIG 843
            + GYNQEDS++MN++S++RG FRS   RSY  +++ ++      + +       ++ K G
Sbjct: 831  YSGYNQEDSMIMNQSSIDRGFFRSLFFRSY-MDLEKRQGMKALETFEKPSRSDTLRLKHG 889

Query: 844  RVDSLDDDGFPFIGANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGM 888
              + LDDDG    G  +   DI+IGK                  +  D S  L+ TE G+
Sbjct: 890  TYEKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGI 949

Query: 889  VQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVP 948
            V +V+L++N DG  F  V +R  + P +GDKF+S HGQKG +G     E+ PFT +GIVP
Sbjct: 950  VDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAEGIVP 1009

Query: 949  DIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRA 1008
            D++INPHA PSR T   L+E  L K +++L     SGL+  A+PF   + +AI++ L   
Sbjct: 1010 DLIINPHAIPSRMTVAHLIECLLSK-VSSL-----SGLEGDASPFTDVTAEAISKLLREH 1063

Query: 1009 GFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADR 1068
            G+   G E +Y+G TG+ + + +F GPT+YQRL HM +DK+  R  GPV  LTRQPV  R
Sbjct: 1064 GYQSRGFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGR 1123

Query: 1069 KRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRK 1128
             R GG++FGEMERDC+IAHGAA  L ERL   SD++++H+C  C      +  V+   +K
Sbjct: 1124 SRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGSCG-----LMTVIANLKK 1178

Query: 1129 VRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
             +   CR C +  +I + ++PY AKLL QEL +M IT +  TE
Sbjct: 1179 NQFE-CRSCKNKTNIYQIHIPYAAKLLFQELMAMNITPRLYTE 1220


>gi|169616566|ref|XP_001801698.1| hypothetical protein SNOG_11456 [Phaeosphaeria nodorum SN15]
 gi|160703211|gb|EAT81164.2| hypothetical protein SNOG_11456 [Phaeosphaeria nodorum SN15]
          Length = 1252

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/1273 (34%), Positives = 641/1273 (50%), Gaps = 164/1273 (12%)

Query: 18   GEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPG--YDPSK 75
            G E     C     SFF+  GLVS Q++SY+EF +N +Q      G  I+E    YDP +
Sbjct: 17   GGEITSEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGTVILEQNTPYDPDE 76

Query: 76   KGEG--EWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQV 133
              +   + RY  ++FG+V L +P+   G+G     +FP  ARL+N+TYS  M   +  ++
Sbjct: 77   DSDPIIKRRY-EIKFGRVYLARPTHTEGDGTTVA-LFPHEARLRNLTYSGAMLADISNRI 134

Query: 134  YTQKR-------------VTSDKFKTGREQYIQKEV-LSDETTNIIIGRIPVMVKSDLCW 179
               K              VT+      + ++ +++V + +E+  + IG++PVM++S+LC 
Sbjct: 135  MVAKETQVVVEGEDEDMEVTNTVGGPTQIKWEREDVPMDEESARVFIGKLPVMLRSELCH 194

Query: 180  MKGVEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV----SNSMGWTVAYK 229
            ++           +C +D GGYF+I G+EKV +AQE+     + V      ++ WT   +
Sbjct: 195  LRNQSDEALFAFNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGNVPWTAEIR 254

Query: 230  SE-NKRNRLI----VRLVDMS-----KFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSS 279
            S   K  RLI    ++  D S     + +   G      + ++  E+P+ I+F ALG+ S
Sbjct: 255  SAVEKGTRLISSFNIKWADTSLGNPGQGKRAPGPFAYAMLPYIKQEVPMAIVFRALGIVS 314

Query: 280  DKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDK--LIKGTTFPPGE 337
            D+EI++ I +   D  +L +L  SI +     D       AL ++ K    +GT     +
Sbjct: 315  DEEILSHIVYDRTDTQMLELLKPSIEEGAVIQDR----ETALDFIAKRGANQGTRDRRLK 370

Query: 338  STEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLE 397
               + M          T  K  F GYM+  LLQ   GRR  D+RD F  KRL+LAG L+ 
Sbjct: 371  FARDIMQK------DKTLAKPTFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLVA 424

Query: 398  RELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRT 457
               ++      K + K LQR +    T   ++  + ASI+TNGL  + +TG W    K  
Sbjct: 425  NLFRILFLKLTKDVFKYLQRCVESS-TDFNVQMAVKASIITNGLKYSLATGNWGDQKKAA 483

Query: 458  ERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENC 517
               +G+   L R     TL  LRRT   V   GK+   R  H SHWG +C   TP+G+ C
Sbjct: 484  SAKAGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQAC 543

Query: 518  GLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDS 576
            GLVKNL +   VS  S   PI + +    M+ L +          KVFV+G W+GV   +
Sbjct: 544  GLVKNLSLMCYVSVGSDATPIIDFMSQRNMQLLEEYDQNQNPEATKVFVNGVWVGVHSQA 603

Query: 577  LSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKS----- 631
               VS ++  RR   L  ++ + RD    E +IF DAGR++RPL VVEN     +     
Sbjct: 604  QQLVSVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENNPTKPNRNQLV 663

Query: 632  --------------------------LEGKNYTFQALLDHGIIELVGTEEEEDCCTAW-- 663
                                      +    Y ++ L+  G+IE +  EEEE     +  
Sbjct: 664  FDREISNRLVKEQLDSDTRAGWSDADIADNTYGWKGLIQDGVIEYLDAEEEETAMITFSP 723

Query: 664  -------GIKYLLKDIE----------------DKKPIKFTHCELDMSFLLGLSCGIIPF 700
                   G+K  L   E                D +   +THCE+  + +LG+   IIPF
Sbjct: 724  EDLDEWRGMKMGLPTSERANLGKERLRRIKPKPDPRIHAYTHCEIHPAMILGICASIIPF 783

Query: 701  ANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGY 760
             +H+ + R  YQS     QA+G   TN ++R++T+ + L+YPQ+PL  T   +       
Sbjct: 784  PDHNQSPRNTYQS-AMGKQAMGVALTNYALRMETMMNVLYYPQKPLATTRSME------- 835

Query: 761  GHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNK 820
                 L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y       
Sbjct: 836  ----YLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTE----- 886

Query: 821  EMQVKRRSSDDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSG 874
              Q KR   + +  F K      ++ K G  D LDDDG    G  +   DI+IGK A   
Sbjct: 887  --QEKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIA 944

Query: 875  ADH---------------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDK 919
            AD                S  L+ TE G+V +V+ ++N +G  F  V  R  + P +GDK
Sbjct: 945  ADAQELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDK 1004

Query: 920  FSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALG 979
            F+S HGQKG +G    QE+ PFT +G+ PD+VINPHA PSR T   L+E  L K      
Sbjct: 1005 FASRHGQKGTIGITYRQEDMPFTSEGLTPDLVINPHAIPSRMTIAHLVECLLSK------ 1058

Query: 980  KGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQ 1039
             G  +G +  ATPF   +VD I++ L +AG+ K G E +Y+G TG+ +R  +F+GPT+YQ
Sbjct: 1059 VGAITGQEGDATPFTEVTVDEISDLLEQAGYQKRGFEIMYNGHTGKKMRVQVFLGPTYYQ 1118

Query: 1040 RLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFT 1099
            RL HM +DK+  R  GP+  LTRQPV  R R GG++FGEMERDC+IAHGAAA L ERLFT
Sbjct: 1119 RLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFT 1178

Query: 1100 LSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPY-CRICDSGDDIVKANVPYGAKLLCQE 1158
            +SD+Y +H+C  C  ++ +           +G Y CR C +   I + ++PY AKLL QE
Sbjct: 1179 VSDAYTVHVCDICGLMSPI-------ASIKKGMYECRPCHNKTRISQIHIPYAAKLLFQE 1231

Query: 1159 LFSMGITLKFDTE 1171
            L +M I  +  T+
Sbjct: 1232 LLAMNIATRMFTD 1244


>gi|448519935|ref|XP_003868181.1| RNA polymerase II subunit B150 [Candida orthopsilosis Co 90-125]
 gi|380352520|emb|CCG22746.1| RNA polymerase II subunit B150 [Candida orthopsilosis]
          Length = 1228

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/1241 (34%), Positives = 651/1241 (52%), Gaps = 137/1241 (11%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIV-EPGYDPSKKGEGEWRYA 84
            C     SFF E GLVS Q++S++EFI++ +Q+        I+ +P    S K     RY 
Sbjct: 22   CWTVITSFFQEKGLVSQQLDSFDEFIESTIQELIWEDSHLILDQPAQHTSDKDNKNKRY- 80

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVY-TQKRVTSDK 143
             + FG++ + KPS   G+G   H MFP+ ARL+N+TYS+ + V +  +V+ +      D 
Sbjct: 81   EITFGKMYISKPSQTEGDGT-THLMFPQEARLRNLTYSAPLYVDMSKKVFESDDNNRKDN 139

Query: 144  FKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFI 197
                +EQ +Q E   D  + + +G++P+MV+S  C ++ +      E  +C +D GGYF+
Sbjct: 140  ELEWKEQIVQGE---DSDSKVYMGKVPIMVRSKFCMLRDLGEHEMYELKECPYDMGGYFV 196

Query: 198  IKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE-----NKRNRLIVRL-VDMSKFEDI 250
            I G+EKV +AQE+     + V   +    +++ +E      K +RLI  + + +   ++ 
Sbjct: 197  INGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSAIEKGSRLISSMQIKLYGRDEK 256

Query: 251  KGGEKVL--SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFAS----- 303
                + +  ++ ++  +IPI I+F ALGV  D +I+  I +   D  +L +L        
Sbjct: 257  SSSARTIRATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCVEEGF 316

Query: 304  -IHDADNKCDEF-RKG------RNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTK 355
             I + +   D   R+G         ++Y   +++     P  + EE   T          
Sbjct: 317  VIQEREVALDFIGRRGVLGIRREKRIQYAKDILQKELL-PNITQEEGFET---------- 365

Query: 356  QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKAL 415
            +KA FLGYMV  LL     R++ D+RD F  KRL+LAG LL    ++      K +   +
Sbjct: 366  RKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYM 425

Query: 416  QRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQT 475
            QR +  D+    +   + +  +T+GL  + +TG W    K     +G+   L R     T
Sbjct: 426  QRCVENDKEFN-LTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSST 484

Query: 476  LVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SIL 534
            L  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  +  
Sbjct: 485  LSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPS 544

Query: 535  EPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPT 594
            EPI   L + G+E L D    +     +VFV+G W+GV ++  S V  +R  RR  ++  
Sbjct: 545  EPISSFLRDWGLEPLEDYVPSNSPDATRVFVNGVWVGVHREPASLVDYMRDLRRNGDISP 604

Query: 595  QVEIKRDELQSEVRIFMDAGRILRPLLVV------ENMGKIK------------SLEG-- 634
            +V I RD  + E++IF DAGR+ RPL +V      E  G +K            S +G  
Sbjct: 605  EVSIIRDIREKELKIFTDAGRVYRPLFIVDDNPDSETKGDLKLRKEHVNQLLESSYDGLD 664

Query: 635  --KNYTFQALLDHGIIELVGTEEEEDCCTAW------------------GIKYLLKDIED 674
                YT+ +L+  GI+E V  EEEE    A                    ++   ++++ 
Sbjct: 665  DEPTYTWSSLVREGIVEYVDAEEEETIMIAMTPDDLEASKSNLTETQQQDLQMEEQELDP 724

Query: 675  KKPIK---------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPT 725
             K IK         FTHCE+  S +LG++  IIPF +H+ + R  YQS     QA+G   
Sbjct: 725  AKRIKPTGSSNTHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQS-AMGKQAMGVFL 783

Query: 726  TNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHL 785
            TN ++R+DT+++ L+YPQ+PL  T              H+  R EL  GQNAIVA+  + 
Sbjct: 784  TNYAVRMDTMANILYYPQKPLATTR----------AMEHLKFR-ELPAGQNAIVAIACYS 832

Query: 786  GYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRV 845
            GYNQEDS++MN++S++RG+FRS   RSY  +++ ++      + +       ++ K G  
Sbjct: 833  GYNQEDSMIMNQSSIDRGLFRSLFFRSY-MDLEKRQGMKALETFEKPSRSDTLRLKHGTY 891

Query: 846  DSLDDDGFPFIGANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQ 890
            + LDDDG    G  +   DI+IGK                  +  D S  L+ TE G+V 
Sbjct: 892  EKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVD 951

Query: 891  KVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDI 950
            +V+L++N DG  F  V +R  + P +GDKF+S HGQKG +G     E+ PFT +GIVPD+
Sbjct: 952  QVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTAEGIVPDL 1011

Query: 951  VINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGF 1010
            +INPHA PSR T   L+E  L K +++L     SGL+  A+PF   + +AI++ L   G+
Sbjct: 1012 IINPHAIPSRMTVAHLIECLLSK-VSSL-----SGLEGDASPFTDVTAEAISKLLREHGY 1065

Query: 1011 SKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKR 1070
               G E +Y+G TG+ + + +F GPT+YQRL HM +DK+  R  GPV  LTRQPV  R R
Sbjct: 1066 QSRGFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSR 1125

Query: 1071 FGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVR 1130
             GG++FGEMERDC+IAHGAA  L ERL   SD++++H+C  C      +  V+   +K +
Sbjct: 1126 DGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGSCG-----LMTVIANLKKNQ 1180

Query: 1131 GPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
               CR C +  +I + ++PY AKLL QEL +M IT +  TE
Sbjct: 1181 FE-CRSCKNKTNIYQIHIPYAAKLLFQELMAMNITPRLYTE 1220


>gi|302698289|ref|XP_003038823.1| DNA-dependent RNA polymerase II second largest subunit [Schizophyllum
            commune H4-8]
 gi|300112520|gb|EFJ03921.1| DNA-dependent RNA polymerase II second largest subunit [Schizophyllum
            commune H4-8]
          Length = 1204

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/1255 (33%), Positives = 646/1255 (51%), Gaps = 151/1255 (12%)

Query: 2    DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDS 61
            D DDN  T             +  C     SFF+E GLV  Q++S++EFI+N +Q+  D 
Sbjct: 7    DEDDNSIT-------------QEDCWTVISSFFDEKGLVRQQLDSFDEFIQNTMQELVDE 53

Query: 62   FGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTY 121
              E I++     +     + +   ++FGQ+ L +P+    +G     +FP+ ARL+N+TY
Sbjct: 54   NPELILDQAEQHTGHNFDQSKRFEIQFGQIYLSRPTITEADGSVV-PVFPQEARLRNLTY 112

Query: 122  SSRMKVKVQFQVYTQKRV-TSDKFKTGREQYIQKEVLSDE---TTNIIIGRIPVMVKSDL 177
            ++ + ++++     QK +  +D+     E  I + V  DE      + IG++P+M++S  
Sbjct: 113  AAPLYIEMR-----QKTLHATDELDEAGEP-IWRTVKEDEGNAVQKVHIGKVPIMLRSAF 166

Query: 178  CWMKGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTV 226
            C +  +      +  +C +D GGYFII G+EKV +AQE++    ++V      + + +  
Sbjct: 167  CILNKLSDQEIYDLNECPYDSGGYFIINGSEKVLIAQERMATNHVYVFAKAQPSPINFLA 226

Query: 227  AYKSENKRNRLIVRLVDMSKFEDIK----GGEKVLSVYFLSTEIPIWILFFALGVSSDKE 282
              +S  ++    +    +  F   K    G     ++ ++  +IPIW++F AL V SD++
Sbjct: 227  EIRSAVEKGGKTISQFQVKMFHRTKERSMGNVIKATIPYIKVDIPIWVVFRALNVISDRD 286

Query: 283  IVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES---- 338
            I++ I +   D  +L +L   I D        ++   AL ++    +GTT          
Sbjct: 287  ILDHICYESTDPQMLELLKPCIDDGF----VIQEREVALDFIGN--RGTTTGLNRERRVR 340

Query: 339  -TEECMNTYLFPSLH----GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAG 393
              +E +   L P +        +KA F GYMV  LL A   RR+ D+RD F  KRL+LAG
Sbjct: 341  YAQEILQKELLPHVSMAEGSESKKAYFFGYMVHRLLLAALERRELDDRDHFGKKRLDLAG 400

Query: 394  ELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHP 453
             LL    ++      K + + LQ+ +  ++    +   +    ++ GL  + +TG W   
Sbjct: 401  PLLAGLFRMLFRKMTKDVYRYLQKCVESNKDFN-LNLAIKHHTISQGLKYSLATGNWGDQ 459

Query: 454  FKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPD 513
             K     +G+   L R     TL  LRR    +   GK+   R  H +HWG +C   TP+
Sbjct: 460  KKAGAAKAGVSQVLNRYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPE 519

Query: 514  GENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGV 572
            G+ CGLVKNL +   +S  SI  P+ + L    +E L ++A  S     KVFV+G W+GV
Sbjct: 520  GQACGLVKNLSLMACISVGSISAPVIDFLQEWNLESLEENARSSEATFTKVFVNGVWMGV 579

Query: 573  CKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMG----- 627
             +D    V  +RR RR+ ++  +V + RD  + E+R++ DAGR+ RPL +VEN       
Sbjct: 580  HRDPAKLVETIRRLRRKDDISQEVSVVRDIREKELRVYTDAGRVCRPLFIVENQSLLLEK 639

Query: 628  -KIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPI-------- 678
              + +L  +   + +L+  GIIEL+  EEEE       I    +D+E+ +          
Sbjct: 640  HHVHALT-QGAKWDSLVKQGIIELLDAEEEETVM----IAMTPEDLENSRMTPEERAAQQ 694

Query: 679  --------------------KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSS 718
                                 +THCE+  S +LG+   IIPF +H+ + R  YQS     
Sbjct: 695  AEEEVDMTATKVAHTMANTHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS-AMGK 753

Query: 719  QAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAI 778
            QA+G   TN  +R+DT+++ L+YPQ+PL  T   +            L   EL  GQNAI
Sbjct: 754  QAMGIFLTNFILRMDTMANILYYPQKPLATTRSME-----------YLKFRELPAGQNAI 802

Query: 779  VAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEM------QVKRRSSDDM 832
            VA+  + GYNQEDS++MN++S++RG+FRS + R Y  +++ K +      + ++ S D+ 
Sbjct: 803  VAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRGY-TDMEKKSVGMMPTEEFEKPSRDNT 861

Query: 833  VNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---------------DSGADH 877
            +       K G  D L+DDG    G  +   DI+IGK A                +  D 
Sbjct: 862  LRM-----KHGTYDKLEDDGLIAPGTGVNGEDIIIGKTAPIPPDSEELGQRTKNHTRRDV 916

Query: 878  SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQE 937
            S  LK TE G++ +V+L++N+DGK    V +R  R P +GDKF+S HGQKG +G    QE
Sbjct: 917  STPLKSTESGIIDQVLLTTNEDGKKLIRVRVRSTRIPQIGDKFASRHGQKGTIGITYRQE 976

Query: 938  NFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPS 997
            + PFT QGIVPDIVINPHA PSR T G L+E  L K    +G       +  ATPF   +
Sbjct: 977  DMPFTAQGIVPDIVINPHAIPSRMTIGHLVECLLSKVATLIGN------EGDATPFTDLT 1030

Query: 998  VDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPV 1057
            V+A+++ L   GF + G E +Y G TG  +++ +++GPT+YQRL HM +DK+  R  GPV
Sbjct: 1031 VEAVSKSLAAKGFQQRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPV 1090

Query: 1058 HPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKC--KNV 1115
              LTRQPV  R R GG++FGEMERDC+I+HG A  L ERLF  SD+Y++H+C  C    +
Sbjct: 1091 QILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLKERLFDASDAYRLHVCDICGLTAI 1150

Query: 1116 ANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
            AN+         K +   CR C +     +  +PY AKLL QEL +M I  +  T
Sbjct: 1151 ANL---------KKQSFECRACKNKTACSQLYIPYAAKLLFQELQAMNIAPRLYT 1196


>gi|449550934|gb|EMD41898.1| hypothetical protein CERSUDRAFT_110450 [Ceriporiopsis subvermispora
            B]
          Length = 1242

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/1240 (33%), Positives = 641/1240 (51%), Gaps = 138/1240 (11%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYAS 85
            C     SFF + GLV  Q++S++EF++N +Q+  D   + I++     +       R   
Sbjct: 38   CWTVISSFFEQKGLVRQQLDSFDEFVQNTMQELVDENSDLILDQADQHTGHEADVTRRYE 97

Query: 86   MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
            ++FGQ+ L +P+    +G     +FP+ AR +N+TYS+ + ++++ +V   +        
Sbjct: 98   IKFGQIYLSRPTVTEADGS-VVPVFPQEARQRNLTYSAPLYIEIKKRVLIGREDPDSATG 156

Query: 146  TGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIK 199
                +  Q+E   D TT + IG++P+M++S  C +  V+  +      C +D GGYFII 
Sbjct: 157  DILWEPEQRETAED-TTKVWIGKVPIMLRSTFCILHNVQDSELYDLNECPYDSGGYFIIN 215

Query: 200  GAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKR-----NRLIVRLVDMSKFED 249
            G+EKV +AQE++    ++V      + + +    +S  +R     ++  V+L   ++ E 
Sbjct: 216  GSEKVLIAQERMATNHVYVFAKAQPSPISFLAEIRSAVERGGKTISQFQVKLYHRNQ-ER 274

Query: 250  IKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADN 309
              G     ++ ++  +IPIW++F ALGV SD++I+  I +  +D  +L +L   I D   
Sbjct: 275  SLGNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFV 334

Query: 310  KCDEFRKGRNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSLH----GTKQKARF 360
              D       AL ++    +GTT            +E +   + P +        +KA F
Sbjct: 335  IQDR----EVALDFIGN--RGTTTGLNRERRLRYAQEILQKEMLPHVSMAEGSESKKAYF 388

Query: 361  LGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLY 420
             GYM+  LL A   RR  D+RD F  KRL+LAG LL    ++      K + + LQ+ + 
Sbjct: 389  FGYMIHRLLLAALERRDLDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVE 448

Query: 421  GDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLR 480
              +    +   +  + +TNGL  + +TG W    K     +G+   L R     TL  LR
Sbjct: 449  SHKEFN-LSLAVKHNTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLR 507

Query: 481  RTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFE 539
            R    +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  S+  P+ E
Sbjct: 508  RCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSLSAPVIE 567

Query: 540  QLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIK 599
             L   G+E L ++A +S     KVFV+G W+GV +D  + V  +++ RR+ ++  +V + 
Sbjct: 568  FLEEWGLESLEENA-HSATPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVV 626

Query: 600  RDELQSEVRIFMDAGRILRPLLVVENM-------------------------GKIKSLEG 634
            RD  + E+RI+ DAGR+ RPL +VE+                          G+ K  EG
Sbjct: 627  RDIRERELRIYTDAGRVCRPLFIVEDQQLLLTKKHISWLSRSKEEEKQRMSRGEDKDAEG 686

Query: 635  KN-YTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIK-------------- 679
               Y +  L+  G+IEL+  EEEE        +    D+E+ + I               
Sbjct: 687  AYVYRWDNLIKDGVIELLDAEEEETVMICMSPE----DLENTRLIAAGVDPRADSTEVDP 742

Query: 680  ------------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTN 727
                        +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN
Sbjct: 743  SARLKPTPSIHTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGIYLTN 801

Query: 728  PSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGY 787
              +R+DT+++ L+YPQ+PL  T   +            L   EL  GQNA+VA+  + GY
Sbjct: 802  FLVRMDTMANILYYPQKPLATTRSME-----------YLRFRELPAGQNAVVAILCYSGY 850

Query: 788  NQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDS 847
            NQEDS++MN++S++RG+FRS + RSY  +++ K    +    +       ++ K G  D 
Sbjct: 851  NQEDSVIMNQSSIDRGLFRSIYYRSY-MDLEKKSGVQQLEEFEKPSRENTLRMKHGTYDK 909

Query: 848  LDDDGFPFIGANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQKV 892
            L+DDG    G  +   DI+IGK A                +  D S  LK TE G++ +V
Sbjct: 910  LEDDGLIAPGTGVNGEDIIIGKTAPIPPDSEELGQRTRAHTRRDVSTPLKSTESGIIDQV 969

Query: 893  VLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVI 952
            ++++N +G+ F  + +R  R P  GDKF+S HGQKG +G    QE+ PFT +GI PDIVI
Sbjct: 970  LITTNAEGQKFVKIRVRSTRIPQTGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIVI 1029

Query: 953  NPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSK 1012
            NPHA PSR T G L+E  L K    +G       +  ATPF   +V+++++ L + G+  
Sbjct: 1030 NPHAIPSRMTIGHLVECLLSKVATLIGN------EGDATPFTDLTVESVSQVLRQKGYQS 1083

Query: 1013 WGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFG 1072
             G E +Y G TG  +++ +++GPT+YQRL HM +DK+  R  GPV  LTRQPV  R R G
Sbjct: 1084 RGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDG 1143

Query: 1073 GIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKC--KNVANVIQRVVGGGRKVR 1130
            G++FGEMERDC+I+HG AA L ERLF  SD+Y++H+C  C    +AN+ +++        
Sbjct: 1144 GLRFGEMERDCMISHGVAAFLKERLFEASDAYRLHVCDICGLTAIANLKKQMFE------ 1197

Query: 1131 GPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
               CR C +   I +  +PY AKLL QEL SM I  +  T
Sbjct: 1198 ---CRSCKNKTAISQLYIPYAAKLLFQELQSMNIAARLYT 1234


>gi|384497209|gb|EIE87700.1| DNA-directed RNA polymerase II subunit RPB2 [Rhizopus delemar RA
            99-880]
          Length = 1215

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/1225 (33%), Positives = 650/1225 (53%), Gaps = 124/1225 (10%)

Query: 19   EEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVE-PGYDPSKKG 77
            E   +  C     SFF E GLV  Q++S++EF++N +Q+  D     +++  G D    G
Sbjct: 27   ESITQEDCWTVIGSFFEEKGLVRQQLDSFDEFVQNTMQELVDENSNLVLQHVGGD----G 82

Query: 78   EGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQK 137
            +   RY  + FGQ+ L KP+    +G  +  MFP+ AR++N+TY++ + + +  +    +
Sbjct: 83   DVTKRYI-IDFGQIYLSKPTMTEADGSSQ-PMFPQEARIRNLTYAAPLYIDMSKRTQIAR 140

Query: 138  -RVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDF 190
             +  ++      + +I +   +   T + +G++PVM++S  C +  + +       +C F
Sbjct: 141  PQDPNNPITNPNDFFIDEGSEAPPKTKVFVGKVPVMLRSSYCILHDMPEKEMHDLNECSF 200

Query: 191  DHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE---------NKRNRLIVR 240
            D GGYF+I G+EKV +AQE++    ++V S +   T ++ +E            + L ++
Sbjct: 201  DMGGYFVINGSEKVLIAQERMATNTVYVFSKAPPATFSFSAEIRSQPEKGSKNASPLFIK 260

Query: 241  LVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNIL 300
            ++  S      G     ++ ++ +EIP+ I+F ALG  SD++++  I +   D  +L +L
Sbjct: 261  MMRPSAERGTAGQFIRAALPYIRSEIPVVIVFRALGQVSDRDVLEHICYDRNDYEMLELL 320

Query: 301  FASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLHG 353
              SI +A    D+      AL ++ K  +GTT   G + E       E +   L P + G
Sbjct: 321  KPSIEEAFVIQDQ----DVALDFIGK--RGTTV--GATRERRIKYASEILQKELLPHV-G 371

Query: 354  TK-----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHAR 408
            T      +K+ F GYM+  LL A   RR+ D+RD +  KR++LAG L+    ++      
Sbjct: 372  TAYKTETRKSYFFGYMIHRLLLAALERRELDDRDHYGKKRMDLAGPLMAGLFRILFRKLT 431

Query: 409  KRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLG 468
            + +AK LQ+ +   R    +   + ++ +TNGL  + +TG W    K  +  +G+   L 
Sbjct: 432  RDVAKYLQKCIESSREFN-LSLAVKSNTITNGLKYSLATGNWGDQKKAMQARAGVSQVLN 490

Query: 469  RANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGL 528
            R     TL  LRR    +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   
Sbjct: 491  RYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMSY 550

Query: 529  VST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKR 587
            +S  S   P+   L    ME L + ++ S+    KVFV+G WIG+ +D    ++ L++ R
Sbjct: 551  ISVGSSANPLIMFLEEWAMENLEELSATSIADSTKVFVNGVWIGIHRDPGELITSLKQMR 610

Query: 588  RRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKSLEGKNYT 638
            R  ++  +V I RD  + E+R++ DAGR  RPL +VEN         +G+++  +  ++ 
Sbjct: 611  RSVDISPEVSIVRDIREKELRMYTDAGRCCRPLFLVENQQLRLTREDVGRLQDPD-DDFG 669

Query: 639  FQALLDHGIIELVGTEEEED---CCTAWGIKYLLKDIEDKKPIK---------------- 679
            +Q L+  GI+E V  +EEE    C T   +       +   P++                
Sbjct: 670  WQDLIAEGIVEYVDADEEETAMICMTPEDLAESRMATQYGAPLQQTRSLASRVKSQTGTY 729

Query: 680  ---FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLS 736
               +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+
Sbjct: 730  THTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS-AMGKQAMGVYLTNFQMRMDTLA 788

Query: 737  HQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMN 796
            + L+YPQ+PL  T   +            L   EL  GQNAIVA+  + GYNQEDS++MN
Sbjct: 789  NILYYPQKPLTTTRSME-----------FLRFRELPAGQNAIVAILCYSGYNQEDSVIMN 837

Query: 797  RASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFI 856
            ++S++RG+FRS   R+Y  + + K   +     +       ++ K G  + L++DG    
Sbjct: 838  QSSIDRGLFRSLFFRTY-MDAEKKAGMMFMEEFEKPTRESTLRLKHGTYEKLEEDGLIAP 896

Query: 857  GANLQSGDIVIGKYADSGA---------------DHSIKLKHTERGMVQKVVLSSNDDGK 901
            G  +   DI+IGK A   A               D S  L+ TE G+V +V+L++N DG 
Sbjct: 897  GTRVSGDDIIIGKTAPIPAESEELGQRTTTHNKRDASTPLRSTETGIVDQVMLTTNQDGL 956

Query: 902  NFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQ 961
             F  V +R  R P +GDKF+S HGQKG +G    QE+FPF+ +GI PD++INPHA PSR 
Sbjct: 957  KFVKVRVRSTRVPQMGDKFASRHGQKGTIGVTYRQEDFPFSAEGITPDLIINPHAIPSRM 1016

Query: 962  TPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDG 1021
            T G L+E  LGK ++ L     +G +  ATPF   +V+AI++ L   G+ + G E +Y+G
Sbjct: 1017 TIGHLIECLLGK-VSTL-----TGNEGDATPFTDVTVEAISQALQAQGYQQRGFEVMYNG 1070

Query: 1022 RTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMER 1081
             TG  + + +F+GPT+YQRL HM +DK+  R  GPV  LTRQPV  R R GG++FGEMER
Sbjct: 1071 FTGRKLNAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMER 1130

Query: 1082 DCLIAHGAAANLHERLFTLSDSYQMHICRKC--KNVANVIQRVVGGGRKVRGPYCRICDS 1139
            DC+I+HG A  L ERLF  SD+Y++H+C  C    +AN+         K     CR C +
Sbjct: 1131 DCMISHGVAQFLKERLFDASDAYRVHVCDICGLMAIANL---------KKNNFECRSCKN 1181

Query: 1140 GDDIVKANVPYGAKLLCQELFSMGI 1164
               I + ++PY  KLL QEL +M I
Sbjct: 1182 KTRISQIHIPYACKLLFQELMAMNI 1206


>gi|367008806|ref|XP_003678904.1| hypothetical protein TDEL_0A03610 [Torulaspora delbrueckii]
 gi|359746561|emb|CCE89693.1| hypothetical protein TDEL_0A03610 [Torulaspora delbrueckii]
          Length = 1222

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/1227 (34%), Positives = 636/1227 (51%), Gaps = 130/1227 (10%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +FF E GLVS Q++S+N+F+   LQ         I+E     + + +   R   + FG++
Sbjct: 34   AFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHTTEADNISRKYEISFGKI 93

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             + KP     +G   H ++P+ ARL+N+TYSS + V V+ + Y    V   + K    + 
Sbjct: 94   YVTKPMVNESDGV-THALYPQEARLRNLTYSSGLFVDVKKRTYEAVDVPGRELKY---EL 149

Query: 152  IQKEVLSD-ETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGAEKV 204
            I +E   D E+  + IGR+P+M++S  C++    + D      C FD GGYFII G+EKV
Sbjct: 150  IAEESEDDSESGKVFIGRLPIMLRSKNCYLSDATELDLYKLKECPFDMGGYFIINGSEKV 209

Query: 205  FVAQEQICLKRLWVSNSMGWT-VAYKSE-----NKRNRLIVRL-VDMSKFEDIKGGEKVL 257
             +AQE+     + V      + +++ +E      K +R I  L V +   E         
Sbjct: 210  LIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSARTIKA 269

Query: 258  SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG 317
            ++ ++  +IPI I+F ALG+  D EI+  I +   D  +L +L   + D     D     
Sbjct: 270  TLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFVIQDR---- 325

Query: 318  RNALKYVDKLIKGTTFPPGES-----TEECMNTYLFP---SLHG-TKQKARFLGYMVKCL 368
              AL ++ +  +GT     +        + +     P    L G   +KA FLGYM+  L
Sbjct: 326  ETALDFIGR--RGTALGIKKEKRIQYARDILQKEFLPHITQLEGFESRKAFFLGYMINRL 383

Query: 369  LQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPI 428
            L     R+  D+RD F  KRL+LAG LL +  K       K + + +QR +   +    +
Sbjct: 384  LLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTKDIFRYMQRTVEEAKDFN-M 442

Query: 429  EYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQY 488
            +  ++A  +T+GL  A +TG W    K     +G+   L R     TL  LRRT   +  
Sbjct: 443  KLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGR 502

Query: 489  TGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-LEPIFEQLFNSGME 547
             GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S      PI   L   GME
Sbjct: 503  DGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEWGME 562

Query: 548  KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEV 607
             L D   +      +VFV+G W GV ++    +  LR  RR+ ++  +V + RD  + E+
Sbjct: 563  PLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMVRDIREKEL 622

Query: 608  RIFMDAGRILRPLLVVEN---------------MGKIKSLE----------GKNYTFQAL 642
            +IF DAGR+ RPL +VE+               +GK+ + E           ++YT+ +L
Sbjct: 623  KIFTDAGRVYRPLFIVEDDETLGHKELKVRKGHIGKLMATEYQDIEGGFEDSEDYTWSSL 682

Query: 643  LDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIK----------------------- 679
            L+ G++E +  EEEE    +          ED +P++                       
Sbjct: 683  LNEGLVEYIDAEEEETILISM-------QPEDLEPVQEAHEFNEDDDLAKRIRATQHATT 735

Query: 680  FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQL 739
            FTHCE+  S +LG++  +IPF +H+ + R  YQS     QA+G   TN ++R+DT+++ L
Sbjct: 736  FTHCEIHPSMILGVAASVIPFPDHNQSPRNTYQS-AMGKQAMGVFLTNYNVRMDTMANIL 794

Query: 740  FYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRAS 799
            +YPQ+PL  T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++S
Sbjct: 795  YYPQKPLGTTRAME-----------YLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSS 843

Query: 800  LERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGAN 859
            ++RG+FRS   RSY  +     M +   + +       ++ K G  D LDDDG    G  
Sbjct: 844  IDRGLFRSLFFRSYMDQEKKYGMSIT-ETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVR 902

Query: 860  LQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFS 904
            +   DI+IGK                  S  D S  L+ TE G+V +V++++N DG  F 
Sbjct: 903  VSGEDIIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQDGLKFV 962

Query: 905  VVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPG 964
             V +R  + P +GDKF+S HGQKG +G    +E+ PFT +GIVPD++INPHA PSR T  
Sbjct: 963  KVRVRTTKVPQIGDKFASRHGQKGTIGITYGREDMPFTAEGIVPDLIINPHAIPSRMTVA 1022

Query: 965  QLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTG 1024
             L+E  L K +AAL     SG +  A+PF   +V+ I++ L   G+   G E +Y+G TG
Sbjct: 1023 HLIECLLSK-VAAL-----SGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTG 1076

Query: 1025 EMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL 1084
            + + + IF GPT+YQRL HM +DK+  R  GP+  LTRQPV  R R GG++FGEMERDC+
Sbjct: 1077 KKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCM 1136

Query: 1085 IAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIV 1144
            IAHGAAA L ERL   SD++++HIC  C  + +VI ++     +     C+ CD+  DI 
Sbjct: 1137 IAHGAAAFLKERLMEASDAFRVHICGIC-GLMSVIAKLNHNQFE-----CKGCDNKIDIY 1190

Query: 1145 KANVPYGAKLLCQELFSMGITLKFDTE 1171
            + N+PY AKLL QEL +M IT +  T+
Sbjct: 1191 QINIPYAAKLLFQELMAMNITPRLYTD 1217


>gi|403224032|dbj|BAM42162.1| DNA-directed RNA polymerase [Theileria orientalis strain Shintoku]
          Length = 1189

 Score =  645 bits (1663), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/1174 (34%), Positives = 619/1174 (52%), Gaps = 85/1174 (7%)

Query: 28   KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFG--ETIVEPGYDPSKKGEGEWRYAS 85
            K   SFFNE+GLV  QI S+N+FI   +Q+  DS    E   +P Y P ++ E    Y  
Sbjct: 63   KVIGSFFNEHGLVHQQIESFNDFITYRMQEIIDSHPAIEITPQPNYRPEEEEENSVLY-R 121

Query: 86   MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
            ++FGQ++L+KPS    +G  +H ++P+ ARL+N+TY+S++ + ++ Q +  +    +  +
Sbjct: 122  LKFGQLSLNKPSVEEKDGVFKH-IWPQEARLRNLTYASQVYIDIEQQTFLNEE--GNLVQ 178

Query: 146  TGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIK 199
            T    Y            + + RIP+M+KS  CW KG+ +      G+C FD GGYF++ 
Sbjct: 179  TDSTVY----------PRVPLCRIPMMLKSAYCWTKGLTEHDLSDIGECVFDQGGYFVVN 228

Query: 200  GAEKVFVAQEQICLKRLWVSNS----MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEK 255
            G E+V +AQE++    ++V N            +S+   ++ +     M     +   + 
Sbjct: 229  GGERVLIAQERMANNFVYVFNKKNQKYSAVAQLRSQPDFSQGVTSFSIMILNSQLAKNKM 288

Query: 256  VLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFR 315
            + ++ ++  ++P+ ILF ALG  SD++I+  I +   D  +L+++ +++ +    C E+ 
Sbjct: 289  LAALPYVKGDVPVPILFRALGCISDRDILQRIVYDFSDTQMLSLMRSTLEE----CSEYT 344

Query: 316  KGRNALKYVDKLIKGTTF-PPGES----TEECMNTYLFPSLHGTK-----QKARFLGYMV 365
                 L Y+ K  +G T   P E+     ++ +  +  P + GT+     +K  ++GYM+
Sbjct: 345  SQEQCLDYIGK--RGPTVGAPLEARIQYAKDLLRRHFLPHV-GTEVGSESKKCFYVGYMI 401

Query: 366  KCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTV 425
              LL    GR   D+R+ F  KRL+LAG L+            K + K LQ  +   R+ 
Sbjct: 402  HRLLLNQLGRINEDDREHFGKKRLDLAGALMASSFGALFRKLAKDVKKLLQNQIDSGRSF 461

Query: 426  RPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQ 485
                     S +T GL     TG W    +     +G+   L R      L  LRR    
Sbjct: 462  DVAGAIKSCSQITQGLQYQLLTGNWGRDKEGNVVRTGVSQVLNRLTFASYLSHLRRLNTP 521

Query: 486  VQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNS 544
            +   GK+   R  H +HWG IC   TP+G+  GLVKNL +   +S  S+   I + L   
Sbjct: 522  LGREGKMAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMCYISVGSMTSTILDFLLEF 581

Query: 545  GMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQ 604
            GM+ L + +   +  + K+F++G WIGV     + V+ L   RR+  + ++  I RD L 
Sbjct: 582  GMDSLDEISPVLIKDRVKIFLNGTWIGVFNQPDALVNLLLELRRKGNISSETSIVRDILS 641

Query: 605  SEVRIFMDAGRILRPLLVVENMGKIKS------LEGKNYTFQALLDHGIIELVGTEEEED 658
            +E++IF D+GR +RPL +VEN   + +      +E     +  LL+ G++E +  EEEE 
Sbjct: 642  NEIKIFTDSGRSMRPLYIVENNRLLITKRHALMIENNQLNWSGLLESGVVEYIDCEEEEI 701

Query: 659  CCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSS 718
            C  A     L+ +  +     +THCE+  S +LG+   IIPF + + + R  YQS     
Sbjct: 702  CMIAMFPDDLINN--NNYCNSYTHCEIHPSMILGVCASIIPFPDQNQSPRNTYQS-AMGK 758

Query: 719  QAIGFPTTNPSIRVDTLSHQLFYPQRPLF--RTMISDCLGKPGYGHNHILPRPELYNGQN 776
            QA+G  +TN ++R+DTLSH L+YPQ+PL   R+M               L   EL  G N
Sbjct: 759  QAMGVYSTNYNLRMDTLSHVLYYPQKPLVCTRSM-------------EFLRFRELPAGIN 805

Query: 777  AIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFG 836
            +IVA+  + GYNQEDSL+MN++S++RG+FRS   R+Y +E       V    +       
Sbjct: 806  SIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSVFNRTYSSEEKYLGSTVIESFTKPTATSN 865

Query: 837  KIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSS 896
             +  K G    LD+DG    G+     +       +   D S  L+  E G+V  V+L+ 
Sbjct: 866  FLNLKRGDYSKLDNDGLIEPGSRSDPNNPNYPAEMNLRMDCSCCLRPNENGVVDNVLLTV 925

Query: 897  NDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHA 956
            N+ G  F+ V +R VR P +GDKF+S HGQKG +G     E+ PFT +GIVPDI++NPHA
Sbjct: 926  NNKGCKFTKVKVRSVRVPQIGDKFASRHGQKGTIGMTFRMEDLPFTCEGIVPDIIMNPHA 985

Query: 957  FPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTE 1016
             PSR T G L+E  LGK       G   G++  ATPF+  +++ I+ +L +  +SK+G E
Sbjct: 986  VPSRMTIGHLIECLLGK------VGALVGMEGDATPFSKMTLEQISSRLFKCHYSKYGNE 1039

Query: 1017 RLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKF 1076
              ++G TG ++ S IF+GPT+YQRL HM EDK+  R  GPV  LTRQP   R R GG++F
Sbjct: 1040 AFHNGFTGNLMASKIFVGPTYYQRLKHMVEDKIHARARGPVTMLTRQPTEGRSRDGGLRF 1099

Query: 1077 GEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYC 1134
            GEMERDC+I+HGAA  L ERLF  SD+Y++H+C  C   ++AN+               C
Sbjct: 1100 GEMERDCMISHGAAKMLKERLFDQSDAYRVHVCNLCGLLSIANLNNSSF---------QC 1150

Query: 1135 RICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
              CD+   I +  +PY  KLL QEL +M I  K 
Sbjct: 1151 TACDNKTQISQVTIPYACKLLLQELMAMAIYPKL 1184


>gi|328859896|gb|EGG09004.1| hypothetical protein MELLADRAFT_47615 [Melampsora larici-populina
            98AG31]
          Length = 1257

 Score =  644 bits (1662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/1239 (33%), Positives = 637/1239 (51%), Gaps = 139/1239 (11%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYAS 85
            C +   +FFNE  LVS QI+S++ F+   +Q+  D  G  I+E     + K     +   
Sbjct: 46   CWQVISAFFNERNLVSQQISSFDGFVNTTMQELVDETGSLILEQSMQYTDKAGDLTKRYE 105

Query: 86   MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
            + FGQ+ L +P+    +G     MFP  ARL+N+TYS+ + V +        +V + +F 
Sbjct: 106  ISFGQIYLSRPTMTESDG-TVSPMFPNEARLRNLTYSAPLYVDMS----KSNKVATGEFD 160

Query: 146  --TGREQYIQKEVLSDE--TTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGY 195
              TG   YI  +  + +  ++ I IG++P+M++S+ C +  ++        +C FD GGY
Sbjct: 161  EVTGEPIYISDDDDNPDKNSSQIYIGKVPIMLRSEFCILDKLDDRGLYDLNECPFDQGGY 220

Query: 196  FIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSENKR---------NRLIVRLVDMS 245
            F+I G+EKV +AQE++    ++V + +    +++ SE +          + + V++    
Sbjct: 221  FVINGSEKVLIAQERMAANHVYVFAKAAPSPISFLSEIRSAVEKGSKTVSTMQVKMFGGH 280

Query: 246  KFEDIKGGEKV-LSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASI 304
            K E   GG  +  ++ ++  +IPI ++F ALG+  DK+I++ I +   D  +  +L   +
Sbjct: 281  KAEKAGGGATIKTTLPYIRNDIPIVVVFRALGIIPDKDILDHICYDRNDIDMFEMLKPCL 340

Query: 305  HDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES---TEECMNTYLFPSLHGTK----QK 357
             D+       ++   AL ++ +    T     +     EE +   + P +  ++    +K
Sbjct: 341  EDSF----PIQEQEVALDFIGRRGTATGLSREKRLKYAEEILQKEMLPHISMSEGQQGKK 396

Query: 358  ARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQR 417
            A F GYMV  LL A   RR  D+RD F  KRL+LAG LL    ++      K + + LQ+
Sbjct: 397  AYFFGYMVHRLLLAALERRDLDDRDHFGKKRLDLAGPLLAGLFRMLFRKLTKDVYRHLQK 456

Query: 418  DLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLV 477
             +   +    +   + ++ +TNGL  + +TG W    K  +  +G+   L R     TL 
Sbjct: 457  CVEMQKPFN-LNTAVKSNTITNGLKYSLATGNWGDQKKAMQARAGVSQVLNRYTFASTLS 515

Query: 478  DLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEP 536
             LRR    +   GK+   R  H SHWG +C   TP+G+ CGLVKNL +   +S  S   P
Sbjct: 516  HLRRCNTPIGRDGKIAKPRQLHNSHWGMVCPAETPEGQACGLVKNLALMSYISVGSPSAP 575

Query: 537  IFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQV 596
            I E L   GME L D+ S  +    KVFV+G W GV +     +  ++R RR  ++  +V
Sbjct: 576  IVEFLEEWGMESL-DEFSADMATGTKVFVNGVWQGVHRSPAELLDTIKRLRRCGDIEPEV 634

Query: 597  EIKRDELQSEVRIFMDAGRILRPLLVVENM------------------------GKIKSL 632
             + RD  + E+R+F D GR+ RPL +VEN                         G +   
Sbjct: 635  SVVRDVRERELRVFTDGGRVCRPLFIVENQQLLLTKDHVEWLSNGYVTGTEDPNGIVPED 694

Query: 633  EGKNYTFQALLDHGIIELVGTEEEED---CCTAWGIKYLLKDIEDKKPIK---------- 679
            EG+ + +  L+  GI+E +  EEEE    C T   ++   +  E  +  K          
Sbjct: 695  EGQPFGWSQLVAKGIVEYLDAEEEETVMICMTPEDLEQSREYQETGQVPKEVFDPAARLK 754

Query: 680  ---------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSI 730
                     +THCE+  + +LG+   IIPF +H+ + R  YQS     QA+G   TN  +
Sbjct: 755  GNTSMYSHTWTHCEIHPAMILGICASIIPFPDHNQSPRNTYQS-AMGKQAMGVYLTNFRM 813

Query: 731  RVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQE 790
            R+DT+++ L+YPQ+PL  T   +            L   EL  GQNAIVA+  + GYNQE
Sbjct: 814  RMDTMANILYYPQKPLATTRSME-----------YLRFRELPAGQNAIVAILCYSGYNQE 862

Query: 791  DSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK------IQSKIGR 844
            DS++MN++S++RG+FRS + RSY         Q K+  +  M  F K      ++ K G 
Sbjct: 863  DSVIMNQSSIDRGLFRSFYYRSYMD-------QEKKAGALQMEEFEKPSRENTLRLKHGT 915

Query: 845  VDSLDDDGFPFIGANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMV 889
             + LDDDG    G  +   DI+IGK A                +  D S+ LK TE G++
Sbjct: 916  YEKLDDDGIITPGTRVSGDDIIIGKTAPIPPDSEELGQRMKTHTKRDVSMPLKSTENGII 975

Query: 890  QKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPD 949
             +V++++N DG  F  V +R  R P  GDKF+S HGQKG +G L  QE+ PFT +GI PD
Sbjct: 976  DQVLITTNQDGLKFVKVRIRSTRIPETGDKFASRHGQKGTVGILYRQEDMPFTSEGICPD 1035

Query: 950  IVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAG 1009
            I+INPHA PSR T G L+E  L K          +G +  ATPF+  +V+AI+  L   G
Sbjct: 1036 IIINPHAIPSRMTIGHLVECLLSK------VSTITGNEGDATPFSEVTVEAISSLLKDNG 1089

Query: 1010 FSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRK 1069
            +   G E +Y+G TG  +R+  ++GPT+YQRL HM  DK+  R  GPV  LTRQPV  R 
Sbjct: 1090 YQSRGLEIMYNGHTGRKLRAQCYLGPTYYQRLKHMVNDKIHSRARGPVQILTRQPVEGRS 1149

Query: 1070 RFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKV 1129
            R GG++FGEMERDC+I+HG A  L ER+F +SD+Y++H+C  C  VA           K 
Sbjct: 1150 RDGGLRFGEMERDCMISHGIAGFLKERMFDVSDAYRVHVCDICGMVAI-------ANLKK 1202

Query: 1130 RGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
            +   CR C +   I +  +PY AKLL QEL SM I  +F
Sbjct: 1203 QSFECRACRNKTAISQVYIPYAAKLLFQELQSMNIASRF 1241


>gi|307103930|gb|EFN52187.1| hypothetical protein CHLNCDRAFT_59036 [Chlorella variabilis]
          Length = 1175

 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 421/1196 (35%), Positives = 632/1196 (52%), Gaps = 116/1196 (9%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPG--YDPSKKGEGEW-RYASMRF 88
            ++F E GLV  Q++S+N+FI   LQ+  D      + P   + P  + E +  +   + F
Sbjct: 28   AYFEEKGLVRQQLDSFNDFINTSLQEIVDENKLISITPQSQHVPGMQVEDDVEKIFEVEF 87

Query: 89   GQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGR 148
            GQ+ L KP F   +G +   +FP+ ARL+N+TY++ + V ++ +    K V SD      
Sbjct: 88   GQIYLSKPVFIEADG-ETAVLFPKEARLRNLTYAAPLYVDIERR---DKVVHSDG----- 138

Query: 149  EQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAE 202
                 +EV       + +G +P+M++SD C + G       + G+C +D GGYF+I G+E
Sbjct: 139  ----SEEVEVTPYPKVFLGDVPIMLRSDYCNLSGRSERDLCDLGECPYDQGGYFVINGSE 194

Query: 203  KVFVAQEQICLKRLWV-SNSMGWTVAYKSENKR-----NRLIVRL-VDMSKFEDIKGGEK 255
            KV +AQE++    ++V   S     AY +E +       R +  + V M      KG  +
Sbjct: 195  KVLIAQERMANNHVYVFRKSQPSKYAYVAECRSVVEGSTRTVSTMQVKMLSRAGQKGAGQ 254

Query: 256  VL--SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDE 313
             +  S+ ++  +IPI I+F ALG  +DK+I+  I +   D +++  L  SI +A      
Sbjct: 255  CIRASIPYVRADIPILIIFRALGFVADKDILEHIVYDFGDTTMMEALRPSIEEAF----P 310

Query: 314  FRKGRNALKYVDK---LIKGTTFPPGESTEECMNTYLFPSLHGTK----QKARFLGYMVK 366
             +    AL Y+ K    I  T     +   E +   L P +   +    +KA F GY++ 
Sbjct: 311  IQSQEVALDYIGKRGSTIGATRNARIQYARELLQKELLPHVGMEEFCETKKAYFFGYVIH 370

Query: 367  CLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDL--YGDRT 424
             LL    GRR+ D+RD + NKRL+L G LL        A+  +++ + L +D+  Y  + 
Sbjct: 371  RLLLVALGRREEDDRDHYGNKRLDLGGPLL--------ANLFRQLFRKLSKDVRGYVQKC 422

Query: 425  V-RPIEYYLDASI----LTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDL 479
            V +  E  L ++I    +T GL  + +TG W       E   G+   L R     TL  L
Sbjct: 423  VDKGKEINLTSAINKDTITRGLRYSLATGNWG-VVGAGEVRPGVSQVLNRLTYASTLSHL 481

Query: 480  RRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIF 538
            RR    +   GK+   R  H S WG IC   TP+G+ CGLVKNL +   +S      P+ 
Sbjct: 482  RRINSPIGREGKIAKPRQLHNSQWGMICPAETPEGQACGLVKNLALMTYISVGCASNPVL 541

Query: 539  EQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEI 598
            + L     E L + +   +    K+FV+G W+G+ +D  + V  LR  RR+ ++ T+V +
Sbjct: 542  DFLQEWATEDLEEISPSVIPKATKIFVNGVWVGIHRDPQTLVETLRAMRRQVDISTEVGV 601

Query: 599  KRDELQSEVRIFMDAGRILRPLLVVENMG---------KIKSLEGKNYTFQALLDHGIIE 649
              D    E+R++ D GR  RPL +VE+            +++ E   +T+Q++++ G IE
Sbjct: 602  VHDIRLQELRLYTDYGRCCRPLFIVEDQAVKVKKRDIINLQNREETGFTWQSMIEAGYIE 661

Query: 650  LVGTEEEEDCCTAWGIK--YLLKDIEDKKPIK----FTHCELDMSFLLGLSCGIIPFANH 703
             V  EEEE    A  I    L +  ED         +THCE+  + +LG+   I+PF +H
Sbjct: 662  YVDVEEEETTMIAMFINDLRLARIAEDAATASSIALYTHCEIHPAMILGVCASIVPFPDH 721

Query: 704  DHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHN 763
            + + R  YQS     QA+G   TN  +R+DT  + LFYPQ+PL  T   +      Y H 
Sbjct: 722  NQSPRNTYQS-AMGKQAMGMYVTNYQVRMDTQGYVLFYPQKPLVTTRNME------YLHF 774

Query: 764  HILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQ 823
              LP      G N IVA+  + GYNQEDS +MN++S++RG+FRS   RSYK E + K+  
Sbjct: 775  RELP-----AGINTIVAIACYSGYNQEDSTMMNQSSIDRGIFRSIFFRSYKTE-EKKQGS 828

Query: 824  VKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---DSGA----- 875
            + + S +         ++ G  D LDDDG    G  +   DIVIGK +   D G+     
Sbjct: 829  LVQESIERPNREITAGTRHGTYDKLDDDGIAPPGTRVSGDDIVIGKTSPIPDDGSGLPQR 888

Query: 876  ----DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLG 931
                D S  L+H+E GM+  V++++  DG+ F  + +R VR P +GDKF+S HGQKG +G
Sbjct: 889  YSKKDASTALRHSESGMIDSVLVTTGADGQRFVKMRVRSVRIPQVGDKFASRHGQKGTIG 948

Query: 932  FLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYAT 991
               +QE+ PF+ +GI PD++INPHA PSR T G L+EA + K  A +GK      +  AT
Sbjct: 949  ITYTQEDMPFSAEGISPDLIINPHAIPSRMTIGHLVEALMSKVAACMGK------EGDAT 1002

Query: 992  PFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKF 1051
            PF + +VD I+  LHR G+   G E +Y+G TG  +++ IF+ PT+YQRL HM +DK+  
Sbjct: 1003 PFTSVTVDNISAALHRCGYQSRGWEVMYNGHTGRQLQAQIFLNPTYYQRLKHMVDDKIHS 1062

Query: 1052 RNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRK 1111
            R  GPV  LTRQPV  R R GG++FGEMERDC+I+HGAAA L ERL+  SD+Y++H+C  
Sbjct: 1063 RGRGPVQILTRQPVEGRARDGGLRFGEMERDCIISHGAAAFLKERLYDQSDAYRVHVCSV 1122

Query: 1112 CK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
            C    VAN+         K    YC  C +   IV+  +PY  KLL QEL +M I 
Sbjct: 1123 CGLIAVANL---------KKNQFYCTACKNTTGIVQVFIPYACKLLFQELMAMCIA 1169


>gi|363752349|ref|XP_003646391.1| hypothetical protein Ecym_4538 [Eremothecium cymbalariae DBVPG#7215]
 gi|356890026|gb|AET39574.1| hypothetical protein Ecym_4538 [Eremothecium cymbalariae DBVPG#7215]
          Length = 1222

 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/1222 (34%), Positives = 631/1222 (51%), Gaps = 118/1222 (9%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +FF E GLVS Q++S+N+FI   +Q         I+E     + + +   R   + FG++
Sbjct: 32   AFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQHTTESDNISRKYEISFGKI 91

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             L KPS    +G   H M+P+ ARL+N+TY+S + V+++ + Y    V     K    + 
Sbjct: 92   YLAKPSMTESDGV-SHAMYPQEARLRNLTYASGLFVEIKKRTYEAVDVPGRDLKY---EI 147

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGAEKVF 205
            IQ+E    E   I IGR+P+M++S  C +  + + D      C FD GGYFII G+EKV 
Sbjct: 148  IQEESEDSEEGKIFIGRVPIMLRSKYCLLDDLSESDLYRLKECPFDMGGYFIINGSEKVL 207

Query: 206  VAQEQICLKRLWV-SNSMGWTVAYKSE-----NKRNRLIVRL-VDMSKFEDIKGGEKVLS 258
            +AQE+     + V   S    +++ +E      K +R I  L V +   E         +
Sbjct: 208  IAQERSAGNIVQVFKKSAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSTSRTIKAT 267

Query: 259  VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGR 318
            + ++  ++PI I+F ALG+  D EI+  I +   D  +L +L   + +     D      
Sbjct: 268  LPYIKQDVPIVIIFRALGIIPDGEILEHICYDQNDWQMLEMLKPCVEEGFVIQDR----E 323

Query: 319  NALKYVDKLIKGTTFPPGES-----TEECMNTYLFP---SLHG-TKQKARFLGYMVKCLL 369
             AL ++ +  +GT     +       ++ +     P    L G   +KA FLGYM+  LL
Sbjct: 324  TALDFIGR--RGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLL 381

Query: 370  QAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIE 429
                 R+  D+RD F  KRL+LAG LL +  K       + + + +QR +   +    ++
Sbjct: 382  LCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVEEAKDFN-LK 440

Query: 430  YYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYT 489
              + A+ +T GL  A +TG W    K     +G+   L R     TL  LRRT   +   
Sbjct: 441  LAVKATTITAGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRD 500

Query: 490  GKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEK 548
            GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S      PI   L   GME 
Sbjct: 501  GKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPVPIITFLNEWGMEP 560

Query: 549  LADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVR 608
            L D   +      +VFV+G W G+ ++    V  +R+ RR+ ++  +V I RD  + E++
Sbjct: 561  LEDYVPHQSPDATRVFVNGVWHGIHRNPARLVDTIRKLRRKGDITAEVSIVRDIREKELK 620

Query: 609  IFMDAGRILRPLLVVEN-------------MGKIKSL--------------EGKNYTFQA 641
            IF DAGR+ RPL VV                G I+ L              E  NYT+ +
Sbjct: 621  IFTDAGRVYRPLFVVAESLHNDGHKELKVRKGHIRKLMLTEYQDIEGGFEEEDINYTWTS 680

Query: 642  LLDHGIIELVGTEEEEDCCTAWGIKYLLKDI-------EDKKPIK----------FTHCE 684
            LL+ GI+E +  EEEE    A   + L  ++       ++  P +          FTHCE
Sbjct: 681  LLNEGIVEYIDAEEEETILIAMQQEDLDPNVPQTADPSDELDPARRIKAIHHSNTFTHCE 740

Query: 685  LDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQR 744
            +  S +LG++  IIPF +H+ + R  YQS     QA+G   TN ++R+DT+++ L+YPQ+
Sbjct: 741  IHPSMILGVAASIIPFPDHNQSPRNTYQSAM-GKQAMGVFLTNYNVRMDTMANILYYPQK 799

Query: 745  PLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGM 804
            PL  T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+
Sbjct: 800  PLGTTRAME-----------YLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGL 848

Query: 805  FRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGD 864
            FRS   RSY  +     M +   S +       ++ K G  D LDDDG    G  +   D
Sbjct: 849  FRSLFFRSYMDQEKRIGMSITE-SFEKPHRTNTLRMKHGTYDKLDDDGLIAPGVRVSGDD 907

Query: 865  IVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLR 909
            ++IGK                  S  D S  L+ TE G+V +V++++N +G  F  V +R
Sbjct: 908  MIIGKTTPIPPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRVR 967

Query: 910  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEA 969
              + P +GDKF+S HGQKG +G    +E+ PFT +G+VPD++INPHA PSR T   L+E 
Sbjct: 968  TTKVPQIGDKFASRHGQKGTIGITYRREDMPFTSEGVVPDLIINPHAIPSRMTVAHLIEC 1027

Query: 970  ALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRS 1029
             L K +AAL     SG +  A+PF   +VD I+  L   G+   G E +Y+G TG+ + +
Sbjct: 1028 LLSK-VAAL-----SGNEGDASPFTDITVDGISRLLREHGYQSRGFEVMYNGHTGKKLMA 1081

Query: 1030 LIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA 1089
             IF GPT+YQRL HM +DK+  R  GP+  LTRQPV  R R GG++FGEMERDC+IAHGA
Sbjct: 1082 QIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGA 1141

Query: 1090 AANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVP 1149
            AA L ERL   SD++++HIC  C  +  V+ ++     K     CR C +  DI + ++P
Sbjct: 1142 AAFLKERLMEASDAFRVHICGIC-GLMTVVAKL-----KHNQFECRGCKNKIDIFQVHIP 1195

Query: 1150 YGAKLLCQELFSMGITLKFDTE 1171
            Y AKLL QEL +M I  +  T+
Sbjct: 1196 YAAKLLFQELMAMNIAPRLYTD 1217


>gi|384498030|gb|EIE88521.1| DNA-directed RNA polymerase II subunit RPB2 [Rhizopus delemar RA
            99-880]
          Length = 1193

 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/1218 (33%), Positives = 648/1218 (53%), Gaps = 124/1218 (10%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVE-PGYDPSKKGEGEWRYA 84
            C     SFF E GLV  Q++S++EF++N +Q+  D     +++  G D    G+   RY 
Sbjct: 12   CWTVIGSFFEEKGLVRQQLDSFDEFVQNTMQELVDENSNLVLQHVGGD----GDVTKRYI 67

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKF 144
             + FGQ+ L KP+    +G  +  MFP+ AR++N+TY++ + + +  +    +    +  
Sbjct: 68   -IDFGQIYLSKPTMTEADGSSQ-PMFPQEARIRNLTYAAPLYIDMSKRTQIARPQDPNDP 125

Query: 145  KTG-REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFI 197
            +T   + ++ +   +   T + +G++PVM++S  C +  + +       +C FD GGYF+
Sbjct: 126  RTNPNDLFVDEGSEAPPKTKVFVGKVPVMLRSSYCILHDMPEKEMHDLNECSFDMGGYFV 185

Query: 198  IKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE---------NKRNRLIVRLVDMSKF 247
            I G+EKV +AQE++    ++V S +   T ++ +E            + L ++++  S  
Sbjct: 186  INGSEKVLIAQERMATNTVYVFSKAPPATFSFSAEIRSQPEKGSKNASPLFIKMMRPSAE 245

Query: 248  EDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA 307
                G     ++ ++ +EIP+ I+F ALG  SD++++  I +   D  +L +L  SI +A
Sbjct: 246  RGTAGQFIRAALPYIRSEIPVVIVFRALGQVSDRDVLEHICYDRNDYEMLELLKPSIEEA 305

Query: 308  DNKCDEFRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLHGTK----- 355
                D+      AL ++ K  +GTT   G + E       E +   L P + GT      
Sbjct: 306  FVIQDQ----DVALDFIGK--RGTTV--GATRERRIKYASEILQKELLPHV-GTAYKTET 356

Query: 356  QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKAL 415
            +K+ F GYM+  LL A   RR+ D+RD +  KR++LAG L+    ++      + +AK L
Sbjct: 357  RKSYFFGYMIHRLLLAALERRELDDRDHYGKKRMDLAGPLMAGLFRLLFRKLTRDVAKYL 416

Query: 416  QRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQT 475
            Q+ +   R    +   + ++ +TNGL  + +TG W    K  +  +G+   L R     T
Sbjct: 417  QKCIESSREFN-LSLAVKSNTITNGLKYSLATGNWGDQKKAMQARAGVSQVLNRYTFAST 475

Query: 476  LVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SIL 534
            L  LRR    +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  S  
Sbjct: 476  LSHLRRCNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMSYISVGSSA 535

Query: 535  EPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPT 594
             P+   L    ME L + ++ S+    KVFV+G WIG+ +D    ++ L++ RR  ++  
Sbjct: 536  NPLIMFLEEWAMENLEELSATSIADSTKVFVNGVWIGIHRDPGELITSLKQMRRSVDISP 595

Query: 595  QVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKSLEGKNYTFQALLDH 645
            +V I RD  + E+R++ DAGR  RPL +VEN         +G+++  +  ++ +Q L+  
Sbjct: 596  EVSIVRDIREKELRMYTDAGRCCRPLFLVENQQLRLTRDDVGRLQDPD-DDFGWQDLIAE 654

Query: 646  GIIELVGTEEEED---CCTAWGIKYLLKDIEDKKPIK-------------------FTHC 683
            GI+E V  +EEE    C T   +       +   P++                   +THC
Sbjct: 655  GIVEYVDADEEETAMICMTPEDLSESRMASQYGAPLQQTRSLASRVKSQTGTYAHTWTHC 714

Query: 684  ELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQ 743
            E+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL++ L+YPQ
Sbjct: 715  EIHPSMILGICASIIPFPDHNQSPRNTYQS-AMGKQAMGVYLTNFQMRMDTLANILYYPQ 773

Query: 744  RPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERG 803
            +PL  T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG
Sbjct: 774  KPLTTTRSME-----------FLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRG 822

Query: 804  MFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSG 863
            +FRS   R+Y  + + K   +     +       ++ K G  + L++DG    G  +   
Sbjct: 823  LFRSLFFRTY-MDAEKKAGMMFMEEFEKPTRESTLRLKHGTYEKLEEDGLIAPGTRVSGD 881

Query: 864  DIVIGKYADSGA---------------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSL 908
            DI+IGK A   A               D S  L+ TE G+V +V+L++N DG  F  V +
Sbjct: 882  DIIIGKTAPIPAESEELGQRTTTHNKRDASTPLRSTETGIVDQVMLTTNQDGLKFVKVRV 941

Query: 909  RQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLE 968
            R  R P +GDKF+S HGQKG +G    QE+FPF+ +GI PD++INPHA PSR T G ++E
Sbjct: 942  RSTRVPQMGDKFASRHGQKGTIGVTYRQEDFPFSAEGITPDLIINPHAIPSRMTIGHMIE 1001

Query: 969  AALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVR 1028
              LGK ++ L     +G +  ATPF   +V+AI++ L   G+ + G E +Y+G TG  + 
Sbjct: 1002 CLLGK-VSTL-----TGNEGDATPFTDVTVEAISQALQAQGYQQRGFEVMYNGFTGRKLN 1055

Query: 1029 SLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG 1088
            + +F+GPT+YQRL HM +DK+  R  GPV  LTRQPV  R R GG++FGEMERDC+I+HG
Sbjct: 1056 AQVFLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHG 1115

Query: 1089 AAANLHERLFTLSDSYQMHICRKC--KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKA 1146
             A  L ERLF  SD+Y++H+C  C    +AN+         K     CR C +   I + 
Sbjct: 1116 VAQFLKERLFDASDAYRVHVCDICGLMAIANL---------KKNNFECRSCKNKTRISQI 1166

Query: 1147 NVPYGAKLLCQELFSMGI 1164
            ++PY  KLL QEL +M I
Sbjct: 1167 HIPYACKLLFQELMAMNI 1184


>gi|347828662|emb|CCD44359.1| RPB2, DNA-dependent RNA polymerase II second largest subunit
            [Botryotinia fuckeliana]
          Length = 1260

 Score =  644 bits (1660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1279 (33%), Positives = 650/1279 (50%), Gaps = 160/1279 (12%)

Query: 16   DLGEE---FLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYD 72
            D GEE        C     SFF   GLVS Q++S++EF++  +Q+  +   +  ++    
Sbjct: 12   DYGEEDAGITAEDCWTVISSFFEAKGLVSQQLDSFDEFVQTTMQELVEENSQLTLDQNNP 71

Query: 73   PSKKGEG-EWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKV-- 129
            PS        R   ++FG + L +P+   G+G  +  M P+ ARL+N+TYSS + +++  
Sbjct: 72   PSSHDNPIALRRYEIKFGTIMLSRPAMTEGDGSTQV-MLPQEARLRNLTYSSPLYIEMTK 130

Query: 130  QFQVYTQKRVTSDKFKTGRE-------QYIQKEVLSDE------------TTNIIIGRIP 170
              QV  ++ V  ++    +E       ++  + V   E               + IG++P
Sbjct: 131  STQVAVERPVPLNELDDEQEAEMVNGGEHPTRLVWEYEDGDPEGPKGAPLPEQVYIGKLP 190

Query: 171  VMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMG 223
            +M+KS+ C +KG+++       +C +D GGYFII G+EKV +AQE+     + V      
Sbjct: 191  MMLKSEFCILKGLDEDELYGWNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKPAN 250

Query: 224  WTVAYKSE-----NKRNRLI----VRLVDMSKFEDIKGGEKVLSVY-FLSTEIPIWILFF 273
              V+Y +E      K +RLI    ++L D         G+ V S   ++  +IPI I+F 
Sbjct: 251  SAVSYLAEIRSALEKGSRLISSLQIKLYDKGDSNRGGFGKTVKSTLPYIKADIPIAIVFR 310

Query: 274  ALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTF 333
            ALGV SD++I+N I +   D  +L +L   I +A    D       AL ++ K   GT+ 
Sbjct: 311  ALGVVSDEDILNHICYDRNDTQMLEMLKPCIEEAFVIQDR----EVALDFIGKRGNGTSL 366

Query: 334  PPGESTE---ECMNTYLFPSLH----GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRN 386
               +  +   + M   L P +        +KA FLGYMV  LLQ   GRR+ D+RD F  
Sbjct: 367  TRDKRIKYARDIMQKELLPHISQKEGSETRKAFFLGYMVHKLLQCALGRRETDDRDHFGK 426

Query: 387  KRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFS 446
            KRL+LAG LL +  +         + + LQR +  +R    +   + ++ +TNGL  + +
Sbjct: 427  KRLDLAGPLLAKLFRNLFRRLTTDVYRYLQRCVENNREFN-LTLGVKSTTITNGLKYSLA 485

Query: 447  TGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKI 506
            TG W    K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +
Sbjct: 486  TGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLV 545

Query: 507  CFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFV 565
            C   TP+G+ CGLVKNL +   V+  +  +PI E +    ME L +          KVFV
Sbjct: 546  CPAETPEGQACGLVKNLALMCYVTVGTPSDPIVEFMIQRNMEVLEEYEPLRAPNATKVFV 605

Query: 566  DGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN 625
            +G W+G+ +D    V  ++  RR   +  +V + R+    E +IF DAGR+ RPLLV++N
Sbjct: 606  NGVWVGIHRDPAHLVKCVQDLRRSHLISHEVSLIREIRDREFKIFTDAGRVCRPLLVIDN 665

Query: 626  -----------------------------MGKIKSLEGKNYTFQALLDHGIIELVGTEEE 656
                                         M K + +    Y FQ L++ G++E +  EEE
Sbjct: 666  DPDSANKGNLVLNKDHIRRLEDDQLLPANMDKDEKVRNGYYGFQGLINDGVVEYLDAEEE 725

Query: 657  E-----------DCCTAWGIKYLLKDIED-------KKPIK-----FTHCELDMSFLLGL 693
            E           D        Y ++  E        K PI      +THCE+  S +LG+
Sbjct: 726  ETVMITMTPEDLDISRQLQAGYQIRPDESGDLNKRVKAPINPTAHVWTHCEIHPSMILGI 785

Query: 694  SCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISD 753
               IIPF +H+ + R  YQS     QA+G   TN  +R+DT+++ L+YPQ+PL  T   +
Sbjct: 786  CASIIPFPDHNQSPRNCYQS-AMGKQAMGVFLTNFDVRMDTMANILYYPQKPLATTRSME 844

Query: 754  CLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSY 813
                        L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y
Sbjct: 845  -----------FLKFRELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSLFYRAY 893

Query: 814  KAEVDNKEMQVKRRSSDDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDIVI 867
                     Q KR   + +  F K      ++ K G  D LDDDG    G  +   DI+I
Sbjct: 894  TD-------QEKRIGMNVVEQFEKPYRSDTLKLKQGTYDKLDDDGIVAPGVRVTGADIII 946

Query: 868  GKYADSGADH---------------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVR 912
            GK A    D                S  L+ TE G+V +V++++N +G  F  V +R  +
Sbjct: 947  GKTAPIAPDSEEMGQRTKAHVKRDASTPLRSTESGLVDQVLITTNAEGLRFVKVRMRTTK 1006

Query: 913  SPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALG 972
             P +GDKF+S HGQKG +G    Q++ PFT +G+VPD++INPHA PSR T   L+E  L 
Sbjct: 1007 IPQIGDKFASRHGQKGTIGITYMQQDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLS 1066

Query: 973  KGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIF 1032
            K ++ L      GL+  ATPF   +VD++++ L   G+   G E +Y G TG  + + +F
Sbjct: 1067 K-VSTL-----RGLEGDATPFTEVTVDSVSKLLRAHGYHSRGFEIMYHGHTGRKMMAQVF 1120

Query: 1033 IGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAAN 1092
            +GPT+YQRL HM +DK+  R  GPV  LTRQPV  R R GG++FGEMERDC+I+HGA+A 
Sbjct: 1121 LGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRFGEMERDCMISHGASAF 1180

Query: 1093 LHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGA 1152
            L ERLF +SD++++HIC  C  +   I ++  G  +     CR C +   I + ++PY A
Sbjct: 1181 LKERLFEVSDAFRVHICDIC-GLMTPIAKINTGSFE-----CRPCKNKTKISQIHIPYAA 1234

Query: 1153 KLLCQELFSMGITLKFDTE 1171
            KLL QEL +M I  +  T+
Sbjct: 1235 KLLFQELAAMNIATRMFTK 1253


>gi|401623583|gb|EJS41677.1| rpb2p [Saccharomyces arboricola H-6]
          Length = 1224

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/1258 (34%), Positives = 650/1258 (51%), Gaps = 138/1258 (10%)

Query: 2    DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVS-FFNEYGLVSHQINSYNEFIKNGLQKAFD 60
            D D  GF D ++     + +       A +S FF E GLVS Q++S+N+F+   LQ    
Sbjct: 12   DEDPYGFEDESAPITAEDSW-------AVISAFFREKGLVSQQLDSFNQFVDYTLQDIIC 64

Query: 61   SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
                 I+E     + + +   R   + FG++ + KP     +G   H ++P+ ARL+N+T
Sbjct: 65   EDSTLILEQLAQHTTESDNISRKYEISFGKIYVTKPMVNESDGV-THALYPQEARLRNLT 123

Query: 121  YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSD-ETTNIIIGRIPVMVKSDLCW 179
            YSS + V V+ + Y    V   + K    + I +E   D E+  + IGR+P+M++S  C+
Sbjct: 124  YSSGLFVDVKKRTYEAVDVPGRELKY---ELIAEESEDDSESGKVFIGRLPIMLRSKNCY 180

Query: 180  MKGVEKGD------CDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE- 231
            +    + D      C FD GGYFII G+EKV +AQE+     + V   +    +++ +E 
Sbjct: 181  LSEATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEI 240

Query: 232  ----NKRNRLIVRL-VDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNL 286
                 K +R I  L V +   E         ++ ++  +IPI I+F ALG+  D EI+  
Sbjct: 241  RSALEKGSRFISTLQVKLYGREGSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEH 300

Query: 287  IDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES-----TEE 341
            I +   D  +L +L   + D     D       AL ++ +  +GT     +       ++
Sbjct: 301  ICYDVNDWQMLEMLKPCVEDGFVIQDR----ETALDFIGR--RGTALGIKKEKRIQYAKD 354

Query: 342  CMNTYLFP---SLHG-TKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLE 397
             +     P    L G   +KA FLGYM+  LL     R+  D+RD F  KRL+LAG LL 
Sbjct: 355  ILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLL- 413

Query: 398  RELKVHIAHARKRMAKALQRDL--YGDRTVRP-----IEYYLDASILTNGLSRAFSTGAW 450
                   A   K + K L +D+  Y  RTV       ++  ++A  +T+GL  A +TG W
Sbjct: 414  -------AQLFKTLFKKLTKDIFRYMQRTVEEAHDFNMKLAINAKTITSGLKYALATGNW 466

Query: 451  SHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLS 510
                K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   
Sbjct: 467  GEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAE 526

Query: 511  TPDGENCGLVKNLGVTGLVSTSI-LEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDW 569
            TP+G+ CGLVKNL +   +S      PI   L   GME L D   +      +VFV+G W
Sbjct: 527  TPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVW 586

Query: 570  IGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---- 625
             GV ++    +  LR  RR+ ++  +V + RD  + E++IF DAGR+ RPL +VE+    
Sbjct: 587  HGVHRNPARLMETLRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESL 646

Query: 626  -----------MGKIKSLE----------GKNYTFQALLDHGIIELVGTEEEEDCCTAWG 664
                       +GKI + E           + YT+ +LL+ G++E +  EEEE    A  
Sbjct: 647  GHKELKVRKGHIGKIMATEYQDIEGGFEDSEEYTWSSLLNEGLVEYIDAEEEESILIAMQ 706

Query: 665  IKYLLK---------DIEDKKPIK-------FTHCELDMSFLLGLSCGIIPFANHDHARR 708
             + L           D++  K I+       FTHCE+  S +LG++  IIPF +H+ + R
Sbjct: 707  PEDLEPTESGEENDPDVDPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPR 766

Query: 709  VLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPR 768
              YQS     QA+G   TN ++R+DT+++ L+YPQ+PL  T   +            L  
Sbjct: 767  NTYQSAM-GKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAME-----------YLKF 814

Query: 769  PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRS 828
             EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   RSY  +     M +   +
Sbjct: 815  RELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITE-T 873

Query: 829  SDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---------------DS 873
             +       ++ K G  D LDDDG    G  +   D++IGK                  S
Sbjct: 874  FEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPISPDEEELGQRTAYHS 933

Query: 874  GADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
              D S  L+ TE G+V +V++++N DG  F  V +R  + P +GDKF+S HGQKG +G  
Sbjct: 934  KRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGIT 993

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
              +E+ PFT +GIVPD++INPHA PSR T   L+E  L K +AAL     SG +  A+PF
Sbjct: 994  YRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSK-VAAL-----SGNEGDASPF 1047

Query: 994  ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
               +V+ I++ L   G+   G E +Y+G TG+ + + IF GPT+YQRL HM +DK+  R 
Sbjct: 1048 TDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARA 1107

Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
             GP+  LTRQPV  R R GG++FGEMERDC+IAHGAA+ L ERL   SD++++HIC  C 
Sbjct: 1108 RGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGIC- 1166

Query: 1114 NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
             +  VI ++     +     C+ CD+  DI + ++PY AKLL QEL +M IT +  T+
Sbjct: 1167 GLMTVIAKLNHNQFE-----CKGCDNKIDIYQIHIPYAAKLLFQELMAMNITPRLYTD 1219


>gi|399216338|emb|CCF73026.1| unnamed protein product [Babesia microti strain RI]
          Length = 1202

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/1208 (34%), Positives = 628/1208 (51%), Gaps = 130/1208 (10%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFG--ETIVEPGYDPSKKGEGEWRYASMRFG 89
            SFF  +GLV  QI S+++F+   +Q+  D +   E   +P Y P  + E    Y  ++FG
Sbjct: 49   SFFKTHGLVHQQIESFDDFVTYRMQEIVDEYPPIEIRPQPQYRPEDEIEVNVIY-KLKFG 107

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
            Q++L++PS     G  +H ++P+ ARL+N+TYSS++ V +  ++Y               
Sbjct: 108  QLSLNRPSVDEKEGVTKH-IWPQEARLRNLTYSSQIYVDIDQEIYIYDEAKG-------- 158

Query: 150  QYIQKEVLSDETT--NIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGA 201
                +E L D T+   I +G+IP+M+KS  CW + V +      G+C +D GGYFI+ G 
Sbjct: 159  ----QETLQDRTSYPRISLGKIPMMLKSMYCWTRNVSEDDLADIGECPYDQGGYFIVGGG 214

Query: 202  EKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKRNR----LIVRLVDMSKFEDIKG 252
            E+V +AQE++    ++V      +   W    +S+ + ++      +++       ++ G
Sbjct: 215  ERVLIAQERMANNFIYVFKKKQPSKFSWVAEIRSQMEYSQGTSAFSIKMKAKQATANVIG 274

Query: 253  G------EKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHD 306
                   + V ++ ++ T+IP+ ILF ALG  +DK+I+  I +  +D  +LN++  ++ D
Sbjct: 275  NRFRSYDQLVATLPYIRTDIPVAILFRALGCVADKDILQRIAYDFDDKQMLNLMKPTLED 334

Query: 307  A-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEECMNTYLFPSLH 352
            A      + C +F   R           ++Y   L++    P           ++   L 
Sbjct: 335  ALDFTTQDACLDFIGKRGPTVGAPRDKRIQYAKDLLRKEVLP-----------HVGTELG 383

Query: 353  GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMA 412
               +K  F+GYMV  LL A  GR   D+RD F  KRL++AG L+            K   
Sbjct: 384  VESKKCYFIGYMVHRLLLAKLGRINQDDRDHFGKKRLDMAGPLMASSFGTLFRKMAKDAK 443

Query: 413  KALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANP 472
            + LQ  +   RT         AS +T GL     TG W          +G+   L R   
Sbjct: 444  RILQHQIDCGRTFDVAGAIRSASQITQGLQYQLLTGNWGKDRDGKVVRTGVSQVLNRLTF 503

Query: 473  LQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTS 532
               L  LRR    +   GK+   R  H +HWG IC   TP+G+  GLVKNL +   +S  
Sbjct: 504  ASCLSHLRRLNTPLGREGKMAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMCSISVG 563

Query: 533  -ILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKE 591
                 I E L   GM+ L +     +  + KVF++G WIG   ++ + V+ L   RRR +
Sbjct: 564  GASSTICELLTELGMDSLDEVPPEVIKDRVKVFINGTWIGCFDEADNLVNTLLHFRRRCD 623

Query: 592  LPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNY------- 637
            +  +  I ++ +  EV+IF DAGR +RPLLVV +  +       ++ +   +Y       
Sbjct: 624  ISHETSIIKEIVSKEVKIFTDAGRAMRPLLVVHDGNRLALKRSHVEKIRDGSYINECSSE 683

Query: 638  ---TFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLS 694
                +  L++ G++E +  EEEE C  +  ++ L  +        +THCE+    +LG+ 
Sbjct: 684  NTSAWNWLVESGVVEYIDCEEEEMCMVSMFVQDLHSN--SNYCSTYTHCEIHPCMILGVC 741

Query: 695  CGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDC 754
              IIPF + + + R  YQS     QA+G  ++N ++R+DTLSH L+YPQ+PL  T   + 
Sbjct: 742  ASIIPFPDQNQSPRNTYQS-AMGKQAMGVYSSNFNLRMDTLSHLLYYPQKPLVCTRAME- 799

Query: 755  LGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYK 814
                       L   EL  G NAIVA+  + GYNQEDSL+MN++S++RG+FRS   R+Y 
Sbjct: 800  ----------FLRFRELPAGINAIVAIMCYSGYNQEDSLIMNQSSIDRGLFRSVFNRTYV 849

Query: 815  AEVDNKEMQVKRRSSDDMVNFGKIQS------KIGRVDSLDDDGFPFIGANLQSGDIVIG 868
            +E        K++ S  +  F +         K G    LD DG    G+ +   D++IG
Sbjct: 850  SEE-------KQQGSVTIEKFERPNPQFVAGMKRGDYSKLDSDGLVEPGSRVLGDDVIIG 902

Query: 869  KYADS--------GADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKF 920
            + + +          D S+ L+ +E G+V  V+LS N  G  F  V +R VR P +GDKF
Sbjct: 903  RISPTLPNQDVAPKRDCSLCLRRSENGVVHSVLLSVNSKGSRFCKVKVRSVRIPQIGDKF 962

Query: 921  SSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGK 980
            +S HGQKG +G     E+ PFT QGIVPDI++NPHA PSR T G L+E  +GK + A+G 
Sbjct: 963  ASRHGQKGTIGITYRMEDMPFTCQGIVPDIIMNPHAVPSRMTIGHLVECLVGK-VGAIG- 1020

Query: 981  GICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQR 1040
                GL+  ATPF++ +V  I  +LH  G+ + G E LY+G TG +++S IFIGPT+YQR
Sbjct: 1021 ----GLEGDATPFSSLTVKEIASKLHELGYERHGNEALYNGYTGRLLKSKIFIGPTYYQR 1076

Query: 1041 LIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTL 1100
            L HM EDK+  R  GPV  LTRQP   R R GG++FGEMERDC+I+HGAA  L ERLF  
Sbjct: 1077 LKHMVEDKIHARARGPVTMLTRQPTEGRSRDGGLRFGEMERDCMISHGAAKVLKERLFDQ 1136

Query: 1101 SDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELF 1160
            SD+Y++H+C  C  +  VI  +  G  +     C  CD+  +I + ++PY  KLL QEL 
Sbjct: 1137 SDAYRVHVCDMCGLI--VIADLNRGSFE-----CSACDNKTNISQVSIPYACKLLLQELM 1189

Query: 1161 SMGITLKF 1168
            SM I  K 
Sbjct: 1190 SMAIYPKL 1197


>gi|71028664|ref|XP_763975.1| DNA-directed RNA polymerase II subunit [Theileria parva strain
            Muguga]
 gi|68350929|gb|EAN31692.1| DNA-directed RNA polymerase II subunit, putative [Theileria parva]
          Length = 1190

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/1190 (34%), Positives = 620/1190 (52%), Gaps = 98/1190 (8%)

Query: 19   EEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFG--ETIVEPGYDPSKK 76
            E F +    K   SFFNE+GLV  QI S+N+FI   +Q+  D+    E   +P Y P ++
Sbjct: 54   ENFTEEDTWKVIGSFFNEHGLVHQQIESFNDFITYRMQEIIDAHPPIEITPQPNYRPEEE 113

Query: 77   GEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQ 136
             E    Y  ++FGQ++L+KPS    +G  +H ++P+ ARL+N+TY+S++ + ++ + +  
Sbjct: 114  EENSILY-RLKFGQLSLNKPSVEEKDGVFKH-IWPQEARLRNLTYASQVYIDIEQETFVN 171

Query: 137  KRVTSDKFKTGREQYIQKEVLSDETT--NIIIGRIPVMVKSDLCWMKGVEK------GDC 188
            +                K V +D T    + + R+P+M KS  CW +G+        G+C
Sbjct: 172  EN--------------GKLVQTDSTVYPRVPLCRMPMMHKSSYCWTRGLNDRDLSDIGEC 217

Query: 189  DFDHGGYFIIKGAEKVFVAQEQICLKRLWV---SNSMGWTVA-YKSENKRNRLIVRLVDM 244
             FD GGYF++ G E+V +AQE++    ++V    NS    VA  +S+    + +  L  M
Sbjct: 218  VFDQGGYFVVNGGERVLIAQERMANNFVYVFNKKNSKYSAVAQLRSQPDFIQGVTSLTIM 277

Query: 245  SKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASI 304
                 +   + V  + ++ ++IP+ ILF ALG  SD++I+  I +   D  +L+++ AS+
Sbjct: 278  ISNSQLTKNKMVAVLPYIRSDIPVPILFRALGCISDRDILQRIVYDFSDTQMLSLMRASL 337

Query: 305  HDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYM 364
             +              L +  + ++   F P   TE          +    +K  +LGYM
Sbjct: 338  EECKRGPTVGALHEERLNFAKETLR-RHFLPHVGTE----------VGSESKKCFYLGYM 386

Query: 365  VKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRT 424
            +  LL    GR   D+R+ F  KRL+LAG L+            K + + L+  +   R+
Sbjct: 387  IHRLLLNQLGRINEDDREHFGKKRLDLAGSLMASSFGTLFRKLAKDVERFLKNQIDSGRS 446

Query: 425  VRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQ 484
                      S +T GL     TG W          +G+   L R      L  LRR   
Sbjct: 447  FDVAGAIKSCSQITQGLQYQLLTGNWGRDKDGNVVRTGVSQVLNRLTFASYLSHLRRLNT 506

Query: 485  QVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFN 543
             +   GK+   R  H +HWG IC   TP+G+  GLVKNL +   +S  S+   I + L  
Sbjct: 507  PLGREGKMAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMCYISVGSLSSTILDFLLE 566

Query: 544  SGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDEL 603
             GM+ L + +   +  + K+F++G W+GV     S V+ L   RR+  + ++  I RD +
Sbjct: 567  FGMDSLDEISPILIKDRVKIFLNGTWVGVFNQPDSLVNVLLELRRKGNISSETSIVRDIM 626

Query: 604  QSEVRIFMDAGRILRPLLVVENMGKIKS------LEGKNYTFQALLDHGIIELVGTEEEE 657
             +E++IF DAGR +RPL +VEN   + +      +E +  T+  LL+ G++E +  EEEE
Sbjct: 627  SNEIKIFTDAGRSMRPLYIVENNRLLITKKHADMIENRQLTWSGLLETGVVEYIDCEEEE 686

Query: 658  DCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHS 717
             C  A     L+ +  +     +THCE+  S +LG+   IIPF + + + R  YQS    
Sbjct: 687  ICMIAMFPDDLVNN--NNYCNSYTHCEIHPSMILGVCASIIPFPDQNQSPRNTYQS-AMG 743

Query: 718  SQAIGFPTTNPSIRVDTLSHQLFYPQRPLF--RTMISDCLGKPGYGHNHILPRPELYNGQ 775
             QA+G  +TN ++R+DTLSH L+YPQ+PL   R+M               L   EL  G 
Sbjct: 744  KQAMGVYSTNYNLRMDTLSHVLYYPQKPLVCTRSM-------------EFLRFRELPAGI 790

Query: 776  NAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF 835
            N+IVA+  + GYNQEDSL+MN++S++RG+FRS   R+Y +E       V    +    + 
Sbjct: 791  NSIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSVFNRTYSSEEKYLGSTVIESFTKPTASG 850

Query: 836  GKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH---------------SIK 880
              +  K G    LD+DG    G+ +   DI+IG+ +   AD                S  
Sbjct: 851  NFLNLKRGDYSKLDNDGLVEPGSRVLGDDIIIGRSSPVEADPNNPQYTSEMNLRMDCSCC 910

Query: 881  LKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFP 940
            L+  E G+V  V+L+ N+ G  F+ V +R +R P +GDKF+S HGQKG +G     E+ P
Sbjct: 911  LRPNENGVVDNVLLTVNNKGCKFTKVKVRSIRVPQIGDKFASRHGQKGTIGMTFRMEDLP 970

Query: 941  FTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDA 1000
            FT  GIVPDI++NPHA PSR T G L+E  LGK       G   G++  ATPF+  ++D 
Sbjct: 971  FTCDGIVPDIIMNPHAVPSRMTIGHLIECLLGK------VGSLVGMEGDATPFSKMTLDQ 1024

Query: 1001 ITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPL 1060
            I+ +L +  +S++G E  ++G TG ++ S IF+GPT+YQRL HM EDK+  R  GPV  L
Sbjct: 1025 ISNRLFKCRYSRYGNEAFHNGFTGNLMASKIFVGPTYYQRLKHMVEDKIHARARGPVTML 1084

Query: 1061 TRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK--NVANV 1118
            TRQP   R R GG++FGEMERDC+I+HGAA  L ERLF  SD+Y++H+C  C   +VAN+
Sbjct: 1085 TRQPTEGRSREGGLRFGEMERDCMISHGAAKMLKERLFDQSDAYRVHVCNFCGLLSVANL 1144

Query: 1119 IQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
                           C  CD+   I +  +PY  KLL QEL +M I  K 
Sbjct: 1145 NNSSF---------QCTACDNKTQISQVTIPYACKLLLQELMAMAIYPKL 1185


>gi|213408763|ref|XP_002175152.1| DNA-directed RNA polymerase II complex subunit Rpb2
            [Schizosaccharomyces japonicus yFS275]
 gi|212003199|gb|EEB08859.1| DNA-directed RNA polymerase II complex subunit Rpb2
            [Schizosaccharomyces japonicus yFS275]
          Length = 1210

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1240 (34%), Positives = 647/1240 (52%), Gaps = 127/1240 (10%)

Query: 18   GEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKG 77
             E   +  C     S+F E  L   Q++S++EF++N +Q+  D    T+    Y      
Sbjct: 9    NETLTQEDCWTVISSYFEENSLARQQLSSFDEFVQNTMQEIVDD-DSTLTLDQYAQHTGA 67

Query: 78   EGEW-RYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQ 136
            +G++ R   + FGQ+ L +P+    +G     MFP+ ARL+N+TYSS + V ++ +V   
Sbjct: 68   QGDYTRRYEINFGQIYLSRPTMTEADGSTT-TMFPQEARLRNLTYSSPLYVDMRKKVM-- 124

Query: 137  KRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDF 190
             R        G E ++ +E   DE + + IG+IP+M++S  C + GV      +  +C +
Sbjct: 125  -RAQDSNVPIGEEIWLTEEE-DDEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECPY 182

Query: 191  DHGGYFIIKGAEKVFVAQEQ-----ICLKRLWVSNSMGWTVAYKSENKR-NRLI--VRLV 242
            D GGYFII G+EKV +AQE+     + + R    + + +    +S  +R +RLI  +++ 
Sbjct: 183  DQGGYFIINGSEKVIIAQERSAANIVQVFRKAAPSPIAYVAEIRSALERGSRLISSMQIK 242

Query: 243  DMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFA 302
             M++  +  G     ++ ++ ++IPI ++F ALGV  D++I+  I +   D  +L ++  
Sbjct: 243  LMARSTENSGQTIKATLPYIRSDIPIVVVFRALGVVPDRDILEHICYDPNDLQMLEMMKP 302

Query: 303  SIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFP---SLH 352
             I +A    D+      AL Y+ K  +G+T   G + E       + +   + P   +L 
Sbjct: 303  CIEEAFVIQDK----DVALDYIGK--RGST--TGVTREKRLRYAHDILQKEMLPHITTLE 354

Query: 353  G-TKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRM 411
            G   +KA FLGYMV  +L     RR+ D+RD F  KRL+LAG LL    ++      + +
Sbjct: 355  GFETRKAFFLGYMVHRMLLCALERREPDDRDHFGKKRLDLAGPLLASLFRMLFKKMTRDV 414

Query: 412  AKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRAN 471
             K +Q+ +  +R    +   + ++ +TNGL  + +TG W    +      G+   L R  
Sbjct: 415  YKYMQKCVETNREFN-LTLAVKSNTITNGLRYSLATGNWGDQKRGLANRVGVSQVLNRYT 473

Query: 472  PLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST 531
               TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   VS 
Sbjct: 474  FASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSV 533

Query: 532  -SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRK 590
             S   PI E L   GME L D    +     KVFV+G W+GV +D +     LR  RRR 
Sbjct: 534  GSPSAPIIEFLEEWGMESLEDYNPSASPNATKVFVNGIWLGVHRDPVHLTETLRSLRRRL 593

Query: 591  ELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKI--------KSLEGKN 636
            ++  +V I RD  + E+R+F DAGRI RPL +V+N       G++        + LE ++
Sbjct: 594  DISAEVSIVRDIREKELRLFTDAGRICRPLFIVDNDSNSDTKGELCIRKEHIQQLLEDRD 653

Query: 637  ---------YTFQALLDHGIIELVGTEEEEDCCTAWGIKYL------------LKDIEDK 675
                     + + +L+  G+IE +  EEEE    A     L             ++++  
Sbjct: 654  RFDINAEQRFGWSSLIASGLIEYLDAEEEETVMIAMSPDDLELSRQANAGYEMQEELDPA 713

Query: 676  KPIK---------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTT 726
            K +K         +THCE+  + +LG+   IIPF +H+ + R  YQS     QA+G   T
Sbjct: 714  KRVKPAPNPHVHAWTHCEIHPAMILGILASIIPFPDHNQSPRNTYQS-AMGKQAMGIYLT 772

Query: 727  NPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLG 786
            N  +R+DT+++ L+YPQ+PL  T   +            L   EL  GQNAIVA+  + G
Sbjct: 773  NYQVRMDTMANILYYPQKPLATTRSME-----------YLKFRELPAGQNAIVAILCYSG 821

Query: 787  YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVD 846
            YNQEDS++MN++S++RG+FRS   R+Y  +     M V     +       ++ K G  D
Sbjct: 822  YNQEDSIIMNQSSIDRGLFRSIFYRTYMDQEKKIGMTVME-EFERPTRSTTLRMKHGTYD 880

Query: 847  SLDDDGFPFIGANLQSGDIVIGKYADSGADH---------------SIKLKHTERGMVQK 891
             L+DDG    G  +   DI+IGK A    DH               S  L+ TE G+V +
Sbjct: 881  KLEDDGLIAPGTRVSGDDIIIGKTAPVPPDHEELGQRTQLHAKRDVSTPLRSTESGIVDQ 940

Query: 892  VVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIV 951
            V++++N +G  F  V +R  R P +GDKF+S HGQKG +G     E+ PF+ QGIVPDI+
Sbjct: 941  VMVTTNQEGLKFVKVRMRSTRIPQIGDKFASRHGQKGTIGMTYRHEDMPFSAQGIVPDII 1000

Query: 952  INPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFS 1011
            INPHA PSR T   L+E  L K ++AL     SGL+  ATPF   +V+A+++ L   GF 
Sbjct: 1001 INPHAIPSRMTVAHLVECQLSK-VSAL-----SGLEGDATPFTEVTVEAVSKLLRSHGFH 1054

Query: 1012 KWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRF 1071
              G E +Y G TG  + + +F+GPT+YQRL H+ +DK+  R  GPV  LTRQPV  R R 
Sbjct: 1055 SRGFEVMYHGHTGRKLVAQVFLGPTYYQRLKHLVDDKIHARARGPVQILTRQPVEGRSRD 1114

Query: 1072 GGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRG 1131
            GG++FGEMERDC I+HG ++ L ERLF  SD+Y++ +C  C  +A           K   
Sbjct: 1115 GGLRFGEMERDCQISHGCSSVLRERLFDCSDAYRVIVCDLCGLIAI-------ASFKKNS 1167

Query: 1132 PYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
              CR C +     +  +PY AKLL QEL SM I  +  T+
Sbjct: 1168 YECRSCQNRTRFSQIYLPYAAKLLFQELMSMNIAPRLFTK 1207


>gi|164660997|ref|XP_001731621.1| hypothetical protein MGL_0889 [Malassezia globosa CBS 7966]
 gi|159105522|gb|EDP44407.1| hypothetical protein MGL_0889 [Malassezia globosa CBS 7966]
          Length = 1197

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/1236 (33%), Positives = 645/1236 (52%), Gaps = 133/1236 (10%)

Query: 19   EEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGE 78
            EE  +  C     +FF E GLV  QI+S+NEF+ N +Q+  +      +E     + + E
Sbjct: 8    EEISQEDCWDVIKAFFEEKGLVRQQIDSFNEFMSNTVQELVEESKSLTLEQSDQHTGQAE 67

Query: 79   GEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKR 138
             + R   + FGQ+ ++KP     +G     +FP+ AR +N+TYS+ + V V  +V   K 
Sbjct: 68   DKTRRYEIEFGQIYMNKPQQTEADGSTA-PLFPQEARQRNLTYSAGLHVDVSQKVLV-KG 125

Query: 139  VTSDKFKTGREQYI----QKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDC 188
               +  + G + +I    Q+E++ ++   + +G++P+M+ S  CW+  +         +C
Sbjct: 126  EEDELDENGDQLWIPDPTQEEIVDEK---VYLGKVPIMLHSHFCWLTDLPDEGKYSLNEC 182

Query: 189  DFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKRNRLIVRLVD 243
             FD GGYFII G+EKV +AQE++    ++V      + + +    +S  +R    +  + 
Sbjct: 183  PFDSGGYFIINGSEKVLIAQERMAANHVYVFSKAPPSPITFLAEIRSAVERGGKTISTMQ 242

Query: 244  MSKFEDIKGGEKVL------SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSIL 297
            +  F   +  EK L      ++ ++  +IPI I+F ALGV  D++++  I +   D  +L
Sbjct: 243  VKLFS--RNREKSLNNTIKATLPYIRNDIPIVIVFRALGVVPDRDVLQHICYDFNDTQML 300

Query: 298  NILFASIHDADNKCDEFRKGRNALKYVDKLIKGTT-----FPPGESTEECMNTYLFPSLH 352
             +L   I +A    D       AL ++ +  +GTT     F      +E +   + P + 
Sbjct: 301  EMLKPCIEEAFVIQDR----EVALDFIGR--RGTTTGLSRFKRTAYAQEILQKEMLPHIS 354

Query: 353  GTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHAR 408
             ++    +KA F GYMV  LL A   RR+ D+RD F  KRL+LAG LL    ++      
Sbjct: 355  MSEGSNTKKAYFFGYMVHRLLLAALDRREIDDRDHFGKKRLDLAGPLLSGLFRMLFRKVT 414

Query: 409  KRMAKALQRDLYGDRTVRPIEYYLDASI----LTNGLSRAFSTGAWSHPFKRTERISGIV 464
            + + + LQR +   R     E++L A++    +TNGL  + +TG W    K  +  +G+ 
Sbjct: 415  RDIYRHLQRCVEDQR-----EFHLQAAVRHATITNGLRYSLATGNWGDQKKAMQSKAGVS 469

Query: 465  ANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLG 524
              L R     TL  LRR    +   GK+   R  H +HWG +C   TP+G+ CGLVKNL 
Sbjct: 470  QVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLS 529

Query: 525  VTGLVSTSILE-PIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSEL 583
            +   +S      PI E L   G+  L D          KVFV+G W+G   D    V  L
Sbjct: 530  LMSNISVGTPSAPIVEFLEEFGLTSLIDMQGADPKAT-KVFVNGVWLGTHDDPGQLVDTL 588

Query: 584  RRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE-----------NMGKIKSL 632
            R  RR+ ++  +V + RD  + E+RI+ DAGR+LRPL +V+           ++  +   
Sbjct: 589  RDLRRKDDISHEVSVVRDIREKELRIYTDAGRLLRPLFIVDQPSMTLLIKRHHVEALNEE 648

Query: 633  EGKNYTFQALLDHGIIELVGTEEEED---CCTAWGIK----------YLLKDIEDKK--- 676
             G+ + +  L+  G+IE + TEEEE    C + + ++          ++  D+ D     
Sbjct: 649  TGEGWDWTRLVQSGVIEYLDTEEEETVLICMSPYDLEQSREYKATNGHMPPDMSDATRRL 708

Query: 677  -------PIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPS 729
                      +THCE+  + +LG+   IIPF +H+ + R  YQS     QA+G   TN  
Sbjct: 709  RSAHTFAADTWTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAM-GKQAMGVFLTNYQ 767

Query: 730  IRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQ 789
            IR+DT+++ L+YPQ+PL  T              H+  R EL  GQNAIVA+  + GYNQ
Sbjct: 768  IRMDTMANILYYPQKPLATTR----------AMEHLRFR-ELPAGQNAIVAILCYSGYNQ 816

Query: 790  EDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLD 849
            EDS++MN+++++RG+FRS + R+++ +++ K   +     +       I+ K G  + LD
Sbjct: 817  EDSVIMNQSAIDRGLFRSLYYRTFQ-DMEKKVGVITMEEFEKPTRDTAIRLKHGTYEKLD 875

Query: 850  DDGFPFIGANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVVL 894
             DG    G  +   DI+IGK A                +  D S  +K TE G++ +V++
Sbjct: 876  VDGLVPPGTRVSGEDIIIGKTAPLPPDSDELGMRSKMHTKKDVSTPMKSTESGIIDQVLI 935

Query: 895  SSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINP 954
            ++N +G  F  V +R  R P +GDKF+S HGQKG +G    QE+ PFT +GI PDI+INP
Sbjct: 936  TTNGEGAKFVKVRVRSTRVPQVGDKFASRHGQKGTIGITYRQEDMPFTCEGITPDIIINP 995

Query: 955  HAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWG 1014
            HA PSR T G L+E  L K +A L     SG +  ATPF   +V  +++ L   GF   G
Sbjct: 996  HAIPSRMTIGHLVECLLSK-VATL-----SGQEGDATPFTDLTVKGVSDILFSLGFQSRG 1049

Query: 1015 TERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGI 1074
             E +Y+G TG  +++ +++GPT+YQRL HM +DK+  R  GPV  LTRQPV  R R GG+
Sbjct: 1050 LEVMYNGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGL 1109

Query: 1075 KFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKC--KNVANVIQRVVGGGRKVRGP 1132
            +FGEMERDC+I+HG A  L ER++  SD+Y++HIC  C    VAN+ +            
Sbjct: 1110 RFGEMERDCMISHGMANFLKERMYDASDAYRLHICDLCGLTAVANLRKSTFE-------- 1161

Query: 1133 YCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
             CR C +   I + ++PY AKLL QEL SMGI  + 
Sbjct: 1162 -CRACRNRSAISQIHIPYAAKLLFQELMSMGIASRL 1196


>gi|365984393|ref|XP_003669029.1| hypothetical protein NDAI_0C01250 [Naumovozyma dairenensis CBS 421]
 gi|343767797|emb|CCD23786.1| hypothetical protein NDAI_0C01250 [Naumovozyma dairenensis CBS 421]
          Length = 1227

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/1222 (34%), Positives = 636/1222 (52%), Gaps = 118/1222 (9%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            SFF E GLVS Q++S+N+F+   LQ         I+E     + + +   R   + FG++
Sbjct: 37   SFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHTTESDNISRKYEISFGKI 96

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             + KP     +G   H ++P+ ARL+N+TYSS + V V+ + Y    V   + K    + 
Sbjct: 97   YVTKPMVNESDGV-THALYPQEARLRNLTYSSGLFVDVKKRTYEAVDVPGRELKY---EL 152

Query: 152  IQKEVLSD-ETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGAEKV 204
            I +E   D E+  + IGR+P+M++S  C++    + D      C FD GGYFII G+EKV
Sbjct: 153  IAEESEDDSESGKVFIGRLPIMLRSKNCYLSDATESDLYKLKECPFDMGGYFIINGSEKV 212

Query: 205  FVAQEQICLKRLWV-SNSMGWTVAYKSE-----NKRNRLIVRL-VDMSKFEDIKGGEKVL 257
             +AQE+     + V   +    +++ +E      K +R I  L V +   E         
Sbjct: 213  LIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSARTVKA 272

Query: 258  SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG 317
            ++ ++  +IPI I+F ALG+  D EI+  I +   D  +L +L   + D     D     
Sbjct: 273  TLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFVIQDR---- 328

Query: 318  RNALKYVDKLIKGTTFPPGES-----TEECMNTYLFP---SLHG-TKQKARFLGYMVKCL 368
              AL ++ +  +GT     +       ++ +     P    L G   +KA FLGYM+  L
Sbjct: 329  ETALDFIGR--RGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRL 386

Query: 369  LQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPI 428
            L     R+  D+RD F  KRL+LAG LL +  K       K + + +QR +        +
Sbjct: 387  LLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTKDIFRYMQRTVEEANDFN-M 445

Query: 429  EYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQY 488
            +  ++A  +T+GL  A +TG W    K     +G+   L R     TL  LRRT   +  
Sbjct: 446  KLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGR 505

Query: 489  TGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-LEPIFEQLFNSGME 547
             GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S      PI   L   GME
Sbjct: 506  DGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEWGME 565

Query: 548  KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEV 607
             L D   +      +VFV+G W GV ++    +  LR  RR+ ++  +V + RD  + E+
Sbjct: 566  PLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMDTLRTLRRKGDINPEVSMIRDIREKEL 625

Query: 608  RIFMDAGRILRPLLVVEN------------MGKIKSL--------EG-----KNYTFQAL 642
            +IF DAGR+ RPL +VE+             G I  L        EG     + YT+ +L
Sbjct: 626  KIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHINKLMATEYQDIEGGFEDVEEYTWTSL 685

Query: 643  LDHGIIELVGTEEEEDCCTAWGIKYL-----------LKDIEDKKPIK-------FTHCE 684
            L+ G++E +  EEEE    A   + L           + D++  K I+       FTHCE
Sbjct: 686  LNEGLVEYIDAEEEETILIAMQPEDLEPPAVNEDEPMVDDLDPAKRIRAVQHATTFTHCE 745

Query: 685  LDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQR 744
            +  S +LG++  IIPF +H+ + R  YQS     QA+G   TN ++R+DT+++ L+YPQ+
Sbjct: 746  IHPSMILGVAASIIPFPDHNQSPRNTYQS-AMGKQAMGVFLTNYNVRMDTMANILYYPQK 804

Query: 745  PLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGM 804
            PL  T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+
Sbjct: 805  PLGTTRAME-----------YLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGL 853

Query: 805  FRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGD 864
            FRS   RSY  +     M +   + +       ++ K G  D LDDDG    G  +   D
Sbjct: 854  FRSLFFRSYMDQEKKYGMSITE-TFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGED 912

Query: 865  IVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLR 909
            ++IGK                  S  D S  L+ TE G+V +V++++N DG  F  V +R
Sbjct: 913  VIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQDGLKFVKVRVR 972

Query: 910  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEA 969
              + P +GDKF+S HGQKG +G    +E+ PFT +GIVPD++INPHA PSR T   L+E 
Sbjct: 973  TTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIEC 1032

Query: 970  ALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRS 1029
             L K +AAL     SG +  A+PF   +V+ I+  L   G+   G E +Y+G TG+ + +
Sbjct: 1033 LLSK-VAAL-----SGNEGDASPFTDITVEGISRLLREHGYQSRGFEVMYNGHTGKKLMA 1086

Query: 1030 LIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA 1089
             IF GPT+YQRL HM +DK+  R  GP+  LTRQPV  R R GG++FGEMERDC+IAHGA
Sbjct: 1087 QIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGA 1146

Query: 1090 AANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVP 1149
            A+ L ERL   SD++++H+C  C  + +VI ++     +     C+ CD+  DI + ++P
Sbjct: 1147 ASFLKERLMEASDAFRVHVCGNC-GLMSVIAKLNHNQFE-----CKGCDNKIDIYQIHIP 1200

Query: 1150 YGAKLLCQELFSMGITLKFDTE 1171
            Y AKLL QEL +M IT +  T+
Sbjct: 1201 YAAKLLFQELMAMNITPRLYTD 1222


>gi|344234576|gb|EGV66444.1| beta and beta-prime subunits of DNA dependent RNA-polymerase [Candida
            tenuis ATCC 10573]
          Length = 1233

 Score =  642 bits (1656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/1247 (33%), Positives = 649/1247 (52%), Gaps = 146/1247 (11%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYAS 85
            C     SFF E GLVS Q++S++EFI+  +Q+        +++     + + + E R   
Sbjct: 24   CWLVISSFFQEKGLVSQQLDSFDEFIETTIQELVWEDSHLVLDQPAQHTSEDDFENRRYE 83

Query: 86   MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
            + FG++ + KP+   G+ G  H MFP+ ARL+N+TYSS + V +  +V+  K   +D+ K
Sbjct: 84   ISFGKIYISKPTQTEGD-GTTHPMFPQEARLRNLTYSSPLYVDMTKRVF--KSDDNDR-K 139

Query: 146  TGREQYIQKEVLSDET-TNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFII 198
                ++I++ V  + T T + +G++P+M++S  C ++ +      E  +C +D GGYF+I
Sbjct: 140  NNELEWIEEHVEGEGTDTKVYLGKVPIMLRSKFCMLRDLAEHEFYELKECPYDMGGYFVI 199

Query: 199  KGAEKVFVAQEQICLKRLWVSNSMGWT-VAYKSE-----NKRNRLIVRL-VDMSKFEDIK 251
             G+EKV +AQE+     + V    G + +++ +E      K +RLI  L + +   +D  
Sbjct: 200  NGSEKVLIAQERSAANIVQVFKKAGPSPISHVAEIRSALEKGSRLISSLQIKLYGRDDRA 259

Query: 252  GGEKVL--SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA-- 307
               + +  ++ ++  +IPI I+F ALG+  D +I+  I +   D  +L +L   + +   
Sbjct: 260  ASGRTIKATLPYIKEDIPIVIVFRALGIVPDGDILEHICYDANDWQMLEMLKPCVEEGFV 319

Query: 308  ---DNKCDEF--RKG------RNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQ 356
                    +F  R+G         ++Y   +++     P  + EE   T          +
Sbjct: 320  IQEQEVALDFIGRRGVLGIRREKRIQYAKDILQKELL-PNITQEEGFAT----------R 368

Query: 357  KARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQ 416
            KA FLGYMV  LL     R++ D+RD F  KRL+LAG LL    ++      + +   +Q
Sbjct: 369  KAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFRKLTRDIYNYMQ 428

Query: 417  RDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTL 476
            R +  D+    +   + +  +T+GL  + +TG W    K     +G+   L R     TL
Sbjct: 429  RCVENDKEFN-LTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTL 487

Query: 477  VDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILE 535
              LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  +  E
Sbjct: 488  SHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTSSE 547

Query: 536  PIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQ 595
            PI   L   G+E L D +  +     +VFV+G W+G  +D  S V  +R  RR+ ++  +
Sbjct: 548  PILVFLEEWGLEPLEDYSPSTSPDSTRVFVNGVWVGTHRDPSSLVETIRSLRRKGDISPE 607

Query: 596  VEIKRDELQSEVRIFMDAGRILRPLLVVE-------------NMGKIKSL---------- 632
            V I RD  + E +IF DAGR+ RPL +V+             N   +K L          
Sbjct: 608  VSIIRDIREREFKIFTDAGRVYRPLFIVDDNPYSETKGELMLNKSHVKKLMDSEYDDYVY 667

Query: 633  --EGKNYTFQALLDHGIIELVGTEEEEDCCTAWGI---------------KYLLKDIEDK 675
              E + Y + +L+  GIIE V  EEEE    A                  K +  + ++K
Sbjct: 668  DDEQEAYGWSSLVRDGIIEYVDAEEEETIMIAMTPEDLESSKSTLSEAQQKSMQMEEQEK 727

Query: 676  KPIK------------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGF 723
             P K            FTHCE+  S +LG++  IIPF +H+ + R  YQS     QA+G 
Sbjct: 728  DPAKRIKPTFSGNLHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQS-AMGKQAMGV 786

Query: 724  PTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNV 783
              TN S+R+DT+++ L+YPQ+PL  T   +            L   EL  GQNAIVA+  
Sbjct: 787  FLTNYSVRMDTMANILYYPQKPLATTRSME-----------YLKFRELPAGQNAIVAIAC 835

Query: 784  HLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQV----KRRSSDDMVNFGKIQ 839
            + GYNQEDS++MN++S++RG+FRS   RSY      + M+     +R S  D +      
Sbjct: 836  YSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKALETFERPSRSDTLRL---- 891

Query: 840  SKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---------------DSGADHSIKLKHT 884
             K G  + LDDDG    G  +   DI+IGK                  +  D S  L+ T
Sbjct: 892  -KHGTYEKLDDDGLITPGVRVSGEDIIIGKTTPIPPDAEELGQRTQYHTKRDASTPLRST 950

Query: 885  ERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQ 944
            E G+V +V+L++N DG  F  V +R  + P +GDKF+S HGQKG +G     E+ PFT Q
Sbjct: 951  ESGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRNEDMPFTSQ 1010

Query: 945  GIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQ 1004
            GIVPD++INPHA PSR T   L+E  L K +++L     SGL+  A+PF   + + +++ 
Sbjct: 1011 GIVPDLIINPHAIPSRMTVAHLIECLLSK-VSSL-----SGLEGDASPFTDVTAEEVSKL 1064

Query: 1005 LHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQP 1064
            L   G+   G E +Y+G TG+ + + +F GPT+YQRL HM +DK+  R  GPV  LTRQP
Sbjct: 1065 LREHGYQSRGFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQP 1124

Query: 1065 VADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVG 1124
            V  R R GG++FGEMERDC+IAHGAA  L ERL   SD++++H+C  C      +  V+ 
Sbjct: 1125 VEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGICG-----LMSVIA 1179

Query: 1125 GGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
              +K +   CR C +  +I + ++PY AKLL QEL +M I+ +  TE
Sbjct: 1180 NLKKNQFE-CRACKNKTNIYQIHIPYAAKLLFQELMAMNISPRMYTE 1225


>gi|393218117|gb|EJD03605.1| DNA-dependent RNA polymerase II second largest subunit [Fomitiporia
            mediterranea MF3/22]
          Length = 1274

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/1272 (33%), Positives = 645/1272 (50%), Gaps = 168/1272 (13%)

Query: 21   FLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGE 80
            F +  C     +FFNE GLV  Q++S++EF+KN +Q+  +   + I++     S   +  
Sbjct: 41   FTQEDCWNIISAFFNEKGLVRQQLDSFDEFVKNTIQEIIEENADLILDQQDQHSGSEKDA 100

Query: 81   WRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVT 140
             R   + F Q+ +  PSF   +G  +  +FP+  R++N+TY++ +  ++  Q        
Sbjct: 101  ARRYHIHFSQIIVSNPSFSEADGSTQA-IFPQDCRIRNLTYAAPVYCEMTKQTLIGH--- 156

Query: 141  SDKFKTGREQYIQKEVLSDETTNI--IIGRIPVMVKSDLCWMKGVEKGD------CDFDH 192
             D      E   + E   +   ++  +IGRIP+M++S  C ++   + D      C +D 
Sbjct: 157  EDPDSMTGEMIWEPEHGGEALEHVKPMIGRIPMMLRSYFCNLRKFNERDLYRVNECPYDS 216

Query: 193  GGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKRNRLIVRLVDMSKF 247
            GGYFII G+EKV +AQE++    ++V      + + +    +S  ++    +    +  +
Sbjct: 217  GGYFIINGSEKVLIAQERMATNHVYVFAKAQPSPISFLAEIRSAVEQGGKTISQFQVKMY 276

Query: 248  ----EDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFAS 303
                E   G     ++ ++  +IPIW++F ALGV SD++I+  I F   D S+L +L   
Sbjct: 277  HRGQERASGSVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICFDMNDSSMLEMLKPC 336

Query: 304  IHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES---TEECMNTYLFPSLH----GTKQ 356
            I D     D       AL ++      T     +     +E +   + P +        +
Sbjct: 337  IDDGFVIQDR----EVALDFIGNRGTATGLNRDKRLRYAQEILQKEMLPHISMAEGSESK 392

Query: 357  KARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQ 416
            KA F GYM+  LL A   RR+ D+RD F  KRL+LAG LL    ++      K + + LQ
Sbjct: 393  KAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLTGLFRMLFRKLTKDVYRYLQ 452

Query: 417  RDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTL 476
            + +   +    I   +    LTNGL  + +TG W    K     +G+   L R     TL
Sbjct: 453  KCVETHKEFN-INMAIKTQTLTNGLKYSLATGNWGDQKKAMSSKAGVSQVLNRYTYASTL 511

Query: 477  VDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILE 535
              LRR    +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +  ++S  S+  
Sbjct: 512  SHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMAVISVGSVSG 571

Query: 536  PIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQ 595
            P+ + L   G+E L ++   +     KVFV+G W+GVC+D L+ V+ LR  RR ++  ++
Sbjct: 572  PVIDFLEEWGLETLEENTQST--NLTKVFVNGVWLGVCRDPLNMVNTLRTLRRMQDFDSE 629

Query: 596  VEIKRDELQSEVRIFMDAGRILRPLLVV-----------------------------ENM 626
            V I RD  + E+RI+ DAGR+LRPL +V                             E  
Sbjct: 630  VSIVRDIREREIRIYSDAGRVLRPLFIVEDHKLKLKRQHLRWLQEKWRIEERPYVPREER 689

Query: 627  GKIKSLEG-----------------------KNYTFQALLDHGIIELVGTEEEED---CC 660
             K +  EG                       K +T+ +L+  G+IEL+  EEEE    C 
Sbjct: 690  NKEEVSEGETVADEEEGRPIMRDERRVKRKKKPFTWSSLIRDGVIELLDAEEEETVMICM 749

Query: 661  TAWGI---KYLLKDIEDK-----------KPI----KFTHCELDMSFLLGLSCGIIPFAN 702
            T   +   + L + ++ +           KP+     +THCE+  S +LG+   IIPF +
Sbjct: 750  TPDDLLESRLLRRGLDPRAEADFNPAARLKPLPIAHTWTHCEIHPSMILGICASIIPFPD 809

Query: 703  HDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGH 762
            H+ + R  YQS     QA+G   TN  +R DT+++ L+YPQ+PL  T   +         
Sbjct: 810  HNQSPRNTYQS-AMGKQAMGIYLTNFLMRQDTMANILYYPQKPLATTRAME--------- 859

Query: 763  NHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEM 822
               L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS + R+Y        M
Sbjct: 860  --YLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLYYRTY--------M 909

Query: 823  QVKRRSSDDMVN-FGK------IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---- 871
              ++RS   +V+ F K      ++ K G  D L+DDG    G N++  DI+IGK A    
Sbjct: 910  DQEKRSGAIIVDEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGVNVRGDDIIIGKTAPIPP 969

Query: 872  -----------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKF 920
                        +  D S  LK TE+G+V +VV+++N +G  F  + +R  R P +GDKF
Sbjct: 970  DSEELGQRTRGHTKRDISTPLKSTEQGIVDQVVVTTNAEGTKFVKIRVRSTRIPQIGDKF 1029

Query: 921  SSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGK 980
            +S HGQKG +G    QE+ PFT +GI PDI+INPHA PSR T G L+E  L K    +G 
Sbjct: 1030 ASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKLATIVGN 1089

Query: 981  GICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQR 1040
                  +  ATPF   +VD+++  L   G+   G E +Y G TG  +++ +++GPT+YQR
Sbjct: 1090 ------EGDATPFTDLTVDSVSSVLREKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQR 1143

Query: 1041 LIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTL 1100
            L HM +DK+  R  GPV  LTRQPV  R R GG++FGEMERDC+I+HG AA L ERLF  
Sbjct: 1144 LKHMVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAAFLKERLFDA 1203

Query: 1101 SDSYQMHICRKC--KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQE 1158
            SD+Y++H+C  C    +AN+         K +   CR C +   I +  +PY AKLL QE
Sbjct: 1204 SDAYRLHVCDLCGLTAIANL---------KKQSFECRACKNKTSISQLYIPYAAKLLFQE 1254

Query: 1159 LFSMGITLKFDT 1170
            L +M I  +  T
Sbjct: 1255 LQAMNIAARLYT 1266


>gi|365758370|gb|EHN00218.1| Rpb2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
          Length = 1224

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/1227 (34%), Positives = 638/1227 (51%), Gaps = 130/1227 (10%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +FF E GLVS Q++S+N+F+   LQ         I+E     + + +   R   + FG++
Sbjct: 36   AFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTESDNISRKYEISFGKI 95

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             + KP     +G   H ++P+ ARL+N+TYSS + V V+ + Y    V   + K    + 
Sbjct: 96   YVTKPMVNESDGV-THALYPQEARLRNLTYSSGLFVDVKKRTYEAVDVPGRELKY---EL 151

Query: 152  IQKEVLSD-ETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGAEKV 204
            I +E   D E+  + IGR+P+M++S  C++    + D      C FD GGYFII G+EKV
Sbjct: 152  IAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFIINGSEKV 211

Query: 205  FVAQEQICLKRLWVSNSMGWT-VAYKSE-----NKRNRLIVRL-VDMSKFEDIKGGEKVL 257
             +AQE+     + V      + +++ +E      K +R I  L V +   E         
Sbjct: 212  LIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSARTIKA 271

Query: 258  SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG 317
            ++ ++  +IPI I+F ALG+  D EI+  I +   D  +L +L   + D     D     
Sbjct: 272  TLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFVIQDR---- 327

Query: 318  RNALKYVDKLIKGTTFPPGES-----TEECMNTYLFP---SLHG-TKQKARFLGYMVKCL 368
              AL ++ +  +GT     +       ++ +     P    L G   +KA FLGYM+  L
Sbjct: 328  ETALDFIGR--RGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRL 385

Query: 369  LQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDL--YGDRTVR 426
            L     R+  D+RD F  KRL+LAG L+        A   K + K L +D+  Y  RTV 
Sbjct: 386  LLCALDRKDQDDRDHFGKKRLDLAGPLM--------AQLFKTLFKKLTKDIFRYMQRTVE 437

Query: 427  P-----IEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRR 481
                  ++  ++A  +T+GL  A +TG W    K     +G+   L R     TL  LRR
Sbjct: 438  EAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRR 497

Query: 482  TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-LEPIFEQ 540
            T   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S      PI   
Sbjct: 498  TNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITF 557

Query: 541  LFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKR 600
            L   GME L D   +      +VFV+G W GV ++    +  LR  RR+ ++  +V + R
Sbjct: 558  LSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIR 617

Query: 601  DELQSEVRIFMDAGRILRPLLVVEN---------------MGKIKSLE----------GK 635
            D  + E++IF DAGR+ RPL +VE+               +GK+ + E           +
Sbjct: 618  DIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHVGKLMATEYQDIEGGFEDAE 677

Query: 636  NYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLK---------DIEDKKPIK------- 679
             YT+  LL+ G++E +  EEEE    A   + L           D++  K I+       
Sbjct: 678  EYTWSTLLNEGLVEYIDAEEEESILIAMQPEDLEPNEGSEENDLDVDPAKRIRVARHATT 737

Query: 680  FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQL 739
            FTHCE+  S +LG++  IIPF +H+ + R  YQS     QA+G   TN ++R+DT+++ L
Sbjct: 738  FTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQS-AMGKQAMGVFLTNYNVRMDTMANIL 796

Query: 740  FYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRAS 799
            +YPQ+PL  T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++S
Sbjct: 797  YYPQKPLGTTRAME-----------YLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSS 845

Query: 800  LERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGAN 859
            ++RG+FRS   RSY  +     M +   + +       ++ K G  D LDDDG    G  
Sbjct: 846  IDRGLFRSLFFRSYMDQEKKYGMSITE-TFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVR 904

Query: 860  LQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFS 904
            +   D++IGK                  S  D S  L+ TE G+V +V++++N DG  F 
Sbjct: 905  VSGEDVIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFV 964

Query: 905  VVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPG 964
             V +R  + P +GDKF+S HGQKG +G    +E+ PFT +GIVPD++INPHA PSR T  
Sbjct: 965  KVRVRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVA 1024

Query: 965  QLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTG 1024
             L+E  L K +AAL     SG +  A+PF   +V+ I++ L   G+   G E +Y+G TG
Sbjct: 1025 HLIECLLSK-VAAL-----SGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTG 1078

Query: 1025 EMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL 1084
            + + + IF GPT+YQRL HM +DK+  R  GP+  LTRQPV  R R GG++FGEMERDC+
Sbjct: 1079 KKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCM 1138

Query: 1085 IAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIV 1144
            IAHGAA+ L ERL   SD++++HIC  C  +  VI ++     +     C+ CD+  DI 
Sbjct: 1139 IAHGAASFLKERLMEASDAFRVHICGIC-GLMTVIAKLNHNQFE-----CKGCDNKIDIY 1192

Query: 1145 KANVPYGAKLLCQELFSMGITLKFDTE 1171
            + ++PY AKLL QEL +M IT +  T+
Sbjct: 1193 QIHIPYAAKLLFQELMAMNITPRLYTD 1219


>gi|119489058|ref|XP_001262829.1| DNA-dependent RNA polymerase II RPB140 [Neosartorya fischeri NRRL
            181]
 gi|119410987|gb|EAW20932.1| DNA-dependent RNA polymerase II RPB140 [Neosartorya fischeri NRRL
            181]
          Length = 1255

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1258 (34%), Positives = 645/1258 (51%), Gaps = 148/1258 (11%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGE--WRY 83
            C     SFF+  GLVS Q++S++EFI + +Q+  +  G+  ++    PS   +     R 
Sbjct: 25   CWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTLDQTLPPSDDEDDPVVLRR 84

Query: 84   ASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT-QKRVTSD 142
              ++FG V L +PS   G+G     M P+ ARL+N+TY+S + + +  ++   ++R+ +D
Sbjct: 85   YELKFGTVMLSRPSVTEGDGATTI-MLPQEARLRNLTYASPLYLGITKRIMEGRERLIAD 143

Query: 143  --------------KFKTGREQYIQKEVLSDETT--NIIIGRIPVMVKSDLCWMKGVEK- 185
                          K +    Q+ QKE+ +D+     + IG++P+M+KS  C +K + + 
Sbjct: 144  RDEDDVAPDADEDRKARGTYLQWEQKELPADQAKEETVFIGKMPIMLKSKYCILKDLSEQ 203

Query: 186  -----GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE-----NKR 234
                  +C +D GGYFII G+EKV +AQE+     + V   +      Y +E      K 
Sbjct: 204  ALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNTVQVFKKAPPSPTPYVAEIRSAVEKG 263

Query: 235  NRLI--VRLVDMSKFEDIKGG--EKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDF 289
            +RL+  + L   +K +  KGG    + S   ++ T+IPI ++F ALGV SD++I+N I +
Sbjct: 264  SRLLSQLSLKLFAKGDSAKGGFGPTIRSTLPYVKTDIPIVVVFRALGVVSDEDILNHICY 323

Query: 290  TCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES----TEECMNT 345
               D  +L +L   I +     D       AL ++ K     +    E       E M  
Sbjct: 324  DRNDTPMLEMLKPCIEEGFVIQDR----EVALDFIAKRGSSQSSMNHERRVRYAREIMQK 379

Query: 346  YLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELK 401
             L P +  ++    +KA FLGYMV  LLQ   GRR  D+RD F  KRL+LAG LL    +
Sbjct: 380  ELLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFR 439

Query: 402  VHIAHARKRMAKALQRDLYGDRTVRPIEYYLD----ASILTNGLSRAFSTGAWSHPFKRT 457
            V      + + + +QR +  +R     E YL+    AS LT GL  A +TG W    K  
Sbjct: 440  VLFTRVTRDLQRYVQRCVETNR-----EIYLNIGIKASTLTGGLKYALATGNWGEQKKAA 494

Query: 458  ERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENC 517
               +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ C
Sbjct: 495  SSKAGVSQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQAC 554

Query: 518  GLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDS 576
            GLVKNL +   ++  +  EPI + +    ME L +          KVFV+G W+GV +D 
Sbjct: 555  GLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVGVHRDP 614

Query: 577  LSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------- 628
               V+ +   RRR  +  +V + RD  + E +IF DAGR+ RPL VV+N  K        
Sbjct: 615  AHLVNTMLSLRRRNMISHEVSLIRDIREREFKIFTDAGRVCRPLFVVDNDPKSENCGSLV 674

Query: 629  -----IKSLEG---------------KNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYL 668
                 I+ LE                + + +  L+  G++E V  EEEE        + L
Sbjct: 675  LNKEHIRKLEQDKELPADLDPEDRRERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPEDL 734

Query: 669  ---------------------LKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHAR 707
                                 ++ I  +K   +THCE+  S +LG+   IIPF +H+ + 
Sbjct: 735  EISKQLQAGYALPEEDDPNKRVRSILSQKAHTWTHCEIHPSMILGVCASIIPFPDHNQSP 794

Query: 708  RVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILP 767
            R  YQS     QA+G   TN   R++T+++ L+YPQ+PL  T   +            L 
Sbjct: 795  RNTYQS-AMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSME-----------FLR 842

Query: 768  RPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRR 827
              EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y        + V  R
Sbjct: 843  FRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDTEKMVGLTVVER 902

Query: 828  SSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD--------------- 872
                M +   I  + G  D LD+DG    G  +   DI+IGK A                
Sbjct: 903  FEKPMRS-DTIGMRKGTYDKLDEDGIIAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKAH 961

Query: 873  SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGF 932
            +  D S  L+ TE G+V +V++S+++D   F  V +R  + P +GDKF+S HGQKG +G 
Sbjct: 962  TKLDVSTPLRSTENGIVDQVLVSTSNDDLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGI 1021

Query: 933  LESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATP 992
               QE+ PFT +G+ PD++INPHA PSR T   L+E  L K ++AL      G +  ATP
Sbjct: 1022 TYRQEDMPFTREGVSPDLIINPHAIPSRMTIAHLIECQLSK-VSAL-----RGFEGDATP 1075

Query: 993  FATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFR 1052
            F   +VD+I+  L   G+   G E +Y+G TG  + + +F+GPT+YQRL HM +DK+  R
Sbjct: 1076 FTDVTVDSISRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHAR 1135

Query: 1053 NTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKC 1112
              GP   LTRQPV  R R GG++FGEMERDC+IAHGA+A L ERLF +SD +++HIC  C
Sbjct: 1136 ARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDC 1195

Query: 1113 KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
              +   I ++  G  +     CR+C++   I + ++PY AKLL QEL +M I  +  T
Sbjct: 1196 -GLMTPIAKLKKGLFE-----CRLCNNKHRISQVHIPYAAKLLFQELAAMNIAARMFT 1247


>gi|45198922|ref|NP_985951.1| AFR404Cp [Ashbya gossypii ATCC 10895]
 gi|51701974|sp|Q753Q4.1|RPB2_ASHGO RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2
 gi|44984951|gb|AAS53775.1| AFR404Cp [Ashbya gossypii ATCC 10895]
 gi|374109181|gb|AEY98087.1| FAFR404Cp [Ashbya gossypii FDAG1]
          Length = 1222

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/1222 (34%), Positives = 632/1222 (51%), Gaps = 118/1222 (9%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +FF E GLVS Q++S+N+FI   +Q         I+E     + + +   R   + FG++
Sbjct: 32   AFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQHTTEADNISRKYEISFGKI 91

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             L KPS    +G   H M+P+ ARL+N+TY+S + V+++ + Y    +     K    + 
Sbjct: 92   YLAKPSMTESDGV-SHAMYPQEARLRNLTYASGLFVEIKKRTYEAVDIPGRDLKY---EI 147

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGAEKVF 205
            IQ+E    E   I IGR+P+M++S  C +  + + D      C FD GGYFII G+EKV 
Sbjct: 148  IQEESEDTEEGKIFIGRVPIMLRSKYCLLDDLSESDLYRLKECPFDMGGYFIINGSEKVL 207

Query: 206  VAQEQICLKRLWV-SNSMGWTVAYKSE-----NKRNRLIVRL-VDMSKFEDIKGGEKVLS 258
            +AQE+     + V   S    +++ +E      K +R I  L V +   E         +
Sbjct: 208  IAQERSAGNIVQVFKKSAPSPISHIAEIRSALEKGSRFISTLQVKLYGREGSTSRTIKAT 267

Query: 259  VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGR 318
            + ++  +IPI I+F ALG+  D EI+  I +   D  +L +L   + +     D      
Sbjct: 268  LPYIKQDIPIVIIFRALGIIPDGEILEHICYDQNDWQMLEMLKPCVEEGFVIQDR----E 323

Query: 319  NALKYVDKLIKGTTFPPGES-----TEECMNTYLFP---SLHG-TKQKARFLGYMVKCLL 369
             AL ++ +  +GT     +       ++ +     P    L G   +KA FLGYM+  LL
Sbjct: 324  TALDFIGR--RGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLL 381

Query: 370  QAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIE 429
                 R+  D+RD F  KRL+LAG LL +  K       + + + +QR +   +    ++
Sbjct: 382  LCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVEEAKDFN-LK 440

Query: 430  YYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYT 489
              + A+ +T GL  A +TG W    K     +G+   L R     TL  LRRT   +   
Sbjct: 441  LAVKATTITAGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRD 500

Query: 490  GKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEK 548
            GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S      PI   L   GME 
Sbjct: 501  GKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPVPIITFLNEWGMEP 560

Query: 549  LADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVR 608
            L D   +      +VFV+G W G+ ++    V  +R+ RR+ ++  +V I RD  + E++
Sbjct: 561  LEDYVPHQSPDATRVFVNGVWHGIHRNPARLVDTIRKLRRKGDITAEVSIVRDIREKELK 620

Query: 609  IFMDAGRILRPLLVVENM-------------GKIKSL--------------EGKNYTFQA 641
            IF DAGR+ RPL VV +              G I+ L              E  NYT+ +
Sbjct: 621  IFTDAGRVYRPLFVVADTQHADGHKDLKVRKGHIRKLMLTEYQDIEGGFEDEDINYTWTS 680

Query: 642  LLDHGIIELVGTEEEEDCCTAWGIKYL----------LKDIEDKKPIK-------FTHCE 684
            LL+ GI+E +  EEEE    A   + L            +++  + IK       FTHCE
Sbjct: 681  LLNDGIVEYIDAEEEETILIAMQQEDLDPSVPQTVDPSDELDPARRIKAIHHSNTFTHCE 740

Query: 685  LDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQR 744
            +  S +LG++  +IPF +H+ + R  YQS     QA+G   TN ++R+DT+++ L+YPQ+
Sbjct: 741  IHPSMILGVAASVIPFPDHNQSPRNTYQSAM-GKQAMGVFLTNYNVRMDTMANILYYPQK 799

Query: 745  PLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGM 804
            PL  T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++S++ G+
Sbjct: 800  PLGTTRAME-----------YLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDSGL 848

Query: 805  FRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGD 864
            FRS   RSY  +     M +   S +       ++ K G  + LDDDG    G  +   D
Sbjct: 849  FRSLFFRSYMDQEKRIGMSITE-SFEKPHRTNTLRMKHGTYEKLDDDGLIAPGVRVSGDD 907

Query: 865  IVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLR 909
            I+IGK                  S  D S  L+ TE G+V +V++++N +G  F  V +R
Sbjct: 908  IIIGKTTPIPPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRVR 967

Query: 910  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEA 969
              + P +GDKF+S HGQKG +G    +E+ PFT +G+VPD++INPHA PSR T   L+E 
Sbjct: 968  TTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGVVPDLIINPHAIPSRMTVAHLIEC 1027

Query: 970  ALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRS 1029
             L K +AAL     SG +  A+PF   +VD I++ L   G+   G E +Y+G TG+ + +
Sbjct: 1028 LLSK-VAAL-----SGNEGDASPFTDITVDGISKLLREHGYQSRGFEVMYNGHTGKKLMA 1081

Query: 1030 LIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA 1089
             IF GPT+YQRL HM +DK+  R  GP+  LTRQPV  R R GG++FGEMERDC+IAHGA
Sbjct: 1082 QIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGA 1141

Query: 1090 AANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVP 1149
            AA L ERL   SD++++HIC  C  +  V+ ++     K     CR C +  DI + ++P
Sbjct: 1142 AAFLKERLMEASDAFRVHICGIC-GLMTVVAKL-----KHNQFECRGCKNKIDIYQVHIP 1195

Query: 1150 YGAKLLCQELFSMGITLKFDTE 1171
            Y AKLL QEL +M I  +  T+
Sbjct: 1196 YAAKLLFQELMAMNIAPRLYTD 1217


>gi|366996268|ref|XP_003677897.1| hypothetical protein NCAS_0H02400 [Naumovozyma castellii CBS 4309]
 gi|342303767|emb|CCC71550.1| hypothetical protein NCAS_0H02400 [Naumovozyma castellii CBS 4309]
          Length = 1224

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/1219 (34%), Positives = 632/1219 (51%), Gaps = 114/1219 (9%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            SFF E GLVS Q++S+N+F+   LQ         I+E     + + +   R   + FG++
Sbjct: 36   SFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHTTETDNVSRKYEIGFGKI 95

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             + KP     +G   H ++P+ ARL+N+TYSS + V V+ + Y    V   + K   E  
Sbjct: 96   YVTKPMVNESDGV-THALYPQEARLRNLTYSSGLFVDVKKRTYEAVDVPGRELKY--ELI 152

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGAEKVF 205
             ++     E+  + IGR+P+M++S  C++    + D      C FD GGYFII G+EKV 
Sbjct: 153  AEESEEESESGKVFIGRLPIMLRSKNCYLSDATESDLYKLKECPFDMGGYFIINGSEKVL 212

Query: 206  VAQEQICLKRLWVSNSMGWT-VAYKSE-----NKRNRLIVRL-VDMSKFEDIKGGEKVLS 258
            +AQE+     + V      + +++ +E      K +R I  L V +   E         +
Sbjct: 213  IAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSDARTINAT 272

Query: 259  VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGR 318
            + ++  +IPI I+F ALG+  D EI+  I +   D  +L +L   + D     D      
Sbjct: 273  LPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFVIQDR----E 328

Query: 319  NALKYVDKLIKGTTFPPGES-----TEECMNTYLFP---SLHG-TKQKARFLGYMVKCLL 369
             AL ++ +  +GT     +       ++ +     P    L G   +KA FLGYM+  LL
Sbjct: 329  TALDFIGR--RGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLL 386

Query: 370  QAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIE 429
                 R+  D+RD F  KRL+LAG LL    K       K + + +QR +        ++
Sbjct: 387  LCALDRKDQDDRDHFGKKRLDLAGPLLASLFKTLFRKLTKDIFRYMQRTVEEAHDFN-MK 445

Query: 430  YYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYT 489
              ++A  +T+GL  A +TG W    K     +G+   L R     TL  LRRT   +   
Sbjct: 446  LAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRD 505

Query: 490  GKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-LEPIFEQLFNSGMEK 548
            GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S      PI   L   GME 
Sbjct: 506  GKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEWGMEP 565

Query: 549  LADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVR 608
            L D   +      +VFV+G W GV ++    +  LR  RR+ ++  +V + RD  + E++
Sbjct: 566  LEDYVPHQSPDATRVFVNGVWHGVHRNPARLMDTLRTLRRKGDINPEVSMIRDIREKELK 625

Query: 609  IFMDAGRILRPLLVVEN------------MGKIKSL-------------EGKNYTFQALL 643
            IF DAGR+ RPL +VE+             G I  L             + + YT+ +LL
Sbjct: 626  IFTDAGRVYRPLFIVEDDETLGHKELKVRKGHIAKLMATEYQDIEGGFEDAEEYTWTSLL 685

Query: 644  DHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPI----------------KFTHCELDM 687
            + G++E +  EEEE    +   + L   +E+++ I                 FTHCE+  
Sbjct: 686  NEGLVEYIDAEEEETILISMQPEDLEPPMENEEVIDDMDPAKRIRATQHATTFTHCEIHP 745

Query: 688  SFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLF 747
            S +LG++  IIPF +H+ + R  YQS     QA+G   TN ++R+DT+++ L+YPQ+PL 
Sbjct: 746  SMILGVAASIIPFPDHNQSPRNTYQSAM-GKQAMGVFLTNYNVRMDTMANILYYPQKPLG 804

Query: 748  RTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRS 807
             T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS
Sbjct: 805  TTRSME-----------YLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRS 853

Query: 808  EHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVI 867
               RSY  +     M +   + +       ++ K G  D LDDDG    G  +   DI+I
Sbjct: 854  LFFRSYMDQEKKYGMSITE-TFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDIII 912

Query: 868  GKYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVR 912
            GK                  S  D S  L+ TE G+V +V++++N DG  F  V +R  +
Sbjct: 913  GKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQDGLKFVKVRVRTTK 972

Query: 913  SPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALG 972
             P +GDKF+S HGQKG +G    +E+ PFT +GIVPD++INPHA PSR T   L+E  L 
Sbjct: 973  VPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLS 1032

Query: 973  KGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIF 1032
            K +AAL     SG +  A+PF   +V+ I++ L   G+   G E +Y+G TG+ + + IF
Sbjct: 1033 K-VAAL-----SGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIF 1086

Query: 1033 IGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAAN 1092
             GPT+YQRL HM +DK+  R  GP+  LTRQPV  R R GG++FGEMERDC+IAHGAAA 
Sbjct: 1087 FGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAF 1146

Query: 1093 LHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGA 1152
            L ERL   SD++++HIC  C  + +VI ++     +     C+ CD+  DI + ++PY A
Sbjct: 1147 LKERLMEASDAFRVHICGNC-GLMSVIAKLNHNQFE-----CKGCDNKIDIYQIHIPYAA 1200

Query: 1153 KLLCQELFSMGITLKFDTE 1171
            KLL QEL +M IT +  TE
Sbjct: 1201 KLLFQELMAMNITPRLYTE 1219


>gi|426201159|gb|EKV51082.1| hypothetical protein AGABI2DRAFT_113824 [Agaricus bisporus var.
            bisporus H97]
          Length = 1183

 Score =  640 bits (1652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/1177 (34%), Positives = 623/1177 (52%), Gaps = 116/1177 (9%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSK 75
            D  EE  +  C     SFF + GLV  Q++S++EF++N +Q+  D   + I++     + 
Sbjct: 27   DSYEEITQEDCWTVISSFFEQKGLVRQQLDSFDEFVQNTMQELVDENSDLILDQADQHTG 86

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT 135
                  R   ++FGQ+ L +P+    +G     +FP+ ARL+N+TYS+ + ++++ +V  
Sbjct: 87   HETDMTRRYEIKFGQIYLSRPTVTEADGS-VVPVFPQEARLRNLTYSAPLYIEMRKRVLV 145

Query: 136  QKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CD 189
             +       +   E   +KE   D+ T + IG++P+M++S  C ++G++  D      C 
Sbjct: 146  GREDPDTAGEIAWEA--EKEDHPDDATKVWIGKVPIMLRSTFCILRGLQDQDLYDLNECP 203

Query: 190  FDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKRNRLIVRLVDM 244
            +D GGYFII G+EKV +AQE++    ++V      + + +    +S  ++    +    +
Sbjct: 204  YDSGGYFIINGSEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQV 263

Query: 245  SKF----EDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNIL 300
              F    E   G     ++ ++  +IPIW++F  LGV SD++I+  I +  +D  +L +L
Sbjct: 264  KMFHRNQERSLGNVMKATIPYIKVDIPIWVVFRGLGVISDRDILEHICYDMQDAQMLEML 323

Query: 301  FASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLH- 352
               I D     D       AL ++    +GTT   G S E       E +   + P +  
Sbjct: 324  KPCIDDGFVIQDR----EVALDFIGN--RGTT--TGLSRERRIRYAQEILQKEMLPHVSM 375

Query: 353  ---GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARK 409
                  +KA F GYM+  LL A   RR+ D+RD F  KRL+LAG LL    ++      K
Sbjct: 376  AEGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTK 435

Query: 410  RMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGR 469
             + + LQ+ +   +    +   +    +TNGL  + +TG W    K     +G+   L R
Sbjct: 436  DVYRYLQKCVETHKEFN-LALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNR 494

Query: 470  ANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLV 529
                 TL  LRR    +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +
Sbjct: 495  YTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCI 554

Query: 530  ST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRR 588
            S  S   P+ E L   G+E L ++A +S     KVFV+G W+GV +D  + V  +++ RR
Sbjct: 555  SVGSYSAPVIEFLEEWGLESLEENA-HSTSPCTKVFVNGVWMGVHRDPANLVKTIKKLRR 613

Query: 589  RKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN----MGK--IKSL------EGKN 636
            + ++  +V + RD  + E+RI+ DAGR+ RPL +VEN    +GK  I+ L      EG  
Sbjct: 614  KDDISPEVSVVRDIREKELRIYTDAGRVCRPLFIVENQQLLLGKRHIRWLNSGSDDEGNE 673

Query: 637  YTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKK-------------------- 676
            Y ++ L+  G+IEL+  EEEE       I    +D+E+ +                    
Sbjct: 674  YKWEQLIKGGVIELLDAEEEETVM----ISMTPEDLENSRLQAAGVDPHANDGDFDPAAR 729

Query: 677  ------PIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSI 730
                     +THCE+  S +LG+   IIPF +H+ + R  YQS   + QA+G   TN  I
Sbjct: 730  LKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS-AMAKQAMGIYLTNFLI 788

Query: 731  RVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQE 790
            R+DT+++ L+YPQ+PL  T   +            L   EL  GQNAIVA+  + GYNQE
Sbjct: 789  RMDTMANILYYPQKPLATTRSME-----------YLKFRELPAGQNAIVAILCYSGYNQE 837

Query: 791  DSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDD 850
            DS++MN++S++RG+FRS + RSY  +++ K    +    +       ++ K G  D L+D
Sbjct: 838  DSVIMNQSSIDRGLFRSIYYRSY-MDLEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKLED 896

Query: 851  DGFPFIGANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLS 895
            DG    G  ++  DI+IGK A                +  D S  LK TE G+V +V+++
Sbjct: 897  DGLIAPGTGVRGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTEIGIVDQVLIT 956

Query: 896  SNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPH 955
            +N +G+ F  V +R  R P +GDKF+S HGQKG +G    QE+ PFT +GIVPD++INPH
Sbjct: 957  TNSEGQKFVKVRVRATRIPQIGDKFASRHGQKGTVGITYRQEDMPFTAEGIVPDLIINPH 1016

Query: 956  AFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGT 1015
            A PSR T G L+E  L K    +G       +  ATPF   +V++++  L + G+   G 
Sbjct: 1017 AIPSRMTIGHLVECLLSKVATLIGN------EGDATPFTDLTVESVSTFLRQKGYQSRGL 1070

Query: 1016 ERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIK 1075
            E +Y G TG  +++ I++GPT+YQRL HM +DK+  R  GPV  LTRQPV  R R GG++
Sbjct: 1071 EVMYHGHTGRKLQAQIYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLR 1130

Query: 1076 FGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKC 1112
            FGEMERDC+I+HG A  L ERLF  SD+Y++H+C  C
Sbjct: 1131 FGEMERDCMISHGIAGFLKERLFEASDAYRLHVCDIC 1167


>gi|50549809|ref|XP_502376.1| YALI0D03718p [Yarrowia lipolytica]
 gi|49648244|emb|CAG80564.1| YALI0D03718p [Yarrowia lipolytica CLIB122]
          Length = 1229

 Score =  640 bits (1652), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 420/1244 (33%), Positives = 635/1244 (51%), Gaps = 147/1244 (11%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYAS 85
            C     SFFNE GLVS Q++S++EFI+  +Q+        I++     +   + + +   
Sbjct: 21   CWTVISSFFNEKGLVSQQLDSFDEFIETTIQELVWEDRTLILDQPAQHTTPNDNQNKRFE 80

Query: 86   MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSS----RMKVKVQFQVYTQKRVTS 141
            + FG++ L +P+    +G   H M+P+ AR +N+TYSS     MK +V F +    R  +
Sbjct: 81   ITFGKIYLSRPTMTEADGS-THPMYPQEARARNLTYSSPLYVDMKKRVLFSIDDPARPEA 139

Query: 142  DKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGY 195
            D         +++ V     + + IG++P+M++S  C ++G+ + D      C +D GGY
Sbjct: 140  DVVWNPIPGEVEEPV-----SKVYIGKVPIMLRSKFCILRGLRENDLYELNECPYDQGGY 194

Query: 196  FIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDI 250
            F+I G+EKV +AQE+     + V      + +      +S  ++   ++  + +  F   
Sbjct: 195  FVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSAVEKGSRLISSMQIKMFGRS 254

Query: 251  KGGEKVL--SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDAD 308
              G   +  ++ ++  +IPI ++F ALGV  D +I+  I +   D  +L +L   I +A 
Sbjct: 255  DKGPVTIKAALPYVRADIPIVVVFRALGVVPDGDILEHICYDNNDWQMLEMLKPCIEEAF 314

Query: 309  NKCDEFRKGRNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSLHGTK----QKAR 359
               D       AL Y+ +  +G+              + +   L P +   +    +KA 
Sbjct: 315  VIQDR----EVALDYIGR--RGSAVGVNRERRVRYARDILQKELLPHITQEEGFETRKAY 368

Query: 360  FLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDL 419
            FLGYMV  +L    GR++ D+RD F  KRL+LAG L+        A   + + K L +D+
Sbjct: 369  FLGYMVHRMLLVALGRKEPDDRDHFGKKRLDLAGPLM--------AGIFRMLFKKLTKDI 420

Query: 420  YGDRTVRPIEYYLD--------ASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRAN 471
            Y    ++ +E   D        ++ +TNGL  + +TG W    K     +G+   L R  
Sbjct: 421  Y-RYMLKCVETNKDFNLTLAVKSNTITNGLKYSLATGNWGDQKKAMSSRAGVSQVLNRYT 479

Query: 472  PLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST 531
               TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S 
Sbjct: 480  FASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISV 539

Query: 532  SILE-PIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRK 590
                 PI   L   GME L D   ++     +VFV+G W+GV +D+      ++  RR  
Sbjct: 540  GTPSFPIINFLDEWGMEPLEDYVPHTHTTSTRVFVNGVWVGVHRDATQLTDMIKSLRRMG 599

Query: 591  ELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN-----------------------MG 627
            ++ ++V I RD  + E+RIF DAGR+ RPL VVEN                       M 
Sbjct: 600  DIESEVSIIRDIREKEIRIFTDAGRVYRPLFVVENNPDAERKGELVLQKDHIYQLQQQMA 659

Query: 628  KIKSLEG------KNYTFQALLDHGIIELVGTEEEEDCCTAW-------------GIKYL 668
            +    EG      KN  +  L+D+G+IE +  EEEE    A              G++  
Sbjct: 660  EQAETEGDEGKGDKNTGWNWLVDNGVIEYIDGEEEETVMIAMTPEDLEFSRQMQAGVEMP 719

Query: 669  LKDIEDKKPIK---------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQ 719
              +++  + +K         +THCE+  S +LG+   IIPF +H+ + R  YQS     Q
Sbjct: 720  EDELDPARRVKPAYNPHSHTWTHCEIHPSMILGILASIIPFPDHNQSPRNTYQS-AMGKQ 778

Query: 720  AIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIV 779
            A+G   TN  +R+DT+++ L+YPQ+PL  T   +            L   EL  GQNAIV
Sbjct: 779  AMGVFLTNYDVRMDTMANILYYPQKPLATTRSME-----------FLKFRELPAGQNAIV 827

Query: 780  AVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQ 839
            A+  + GYNQEDS+VMN++S++RG+FRS   RSY  +     M V     +       ++
Sbjct: 828  AILCYSGYNQEDSVVMNQSSIDRGLFRSLFFRSYMDQERRVGMSVVE-EFEKPTRADTLR 886

Query: 840  SKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD---------------SGADHSIKLKHT 884
             K G  D LDDDG    G  +   DI+IGK A                +  D S  L+ T
Sbjct: 887  MKHGTYDKLDDDGLVCPGVRVSGEDIIIGKTAPIPPDAEELGQRTKYHTKRDASTPLRST 946

Query: 885  ERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQ 944
            E G+V +V+L++N +G  F  V +R  + P +GDKF+S HGQKG +G     E+ PF+ +
Sbjct: 947  ENGIVDQVLLTTNQEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFSAE 1006

Query: 945  GIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQ 1004
            G+VPDI+INPHA PSR T   L+E  L K ++ L     SGL+  ATPF   +VDAI++ 
Sbjct: 1007 GVVPDIIINPHAIPSRMTVAHLIECLLSK-VSCL-----SGLEGDATPFTDVTVDAISKL 1060

Query: 1005 LHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQP 1064
            L   G+   G E +Y G TG+ + +  F+GPT+YQRL HM +DK+  R  GPV  LTRQP
Sbjct: 1061 LRSHGYQSRGFEVMYHGHTGKKIMAQCFLGPTYYQRLRHMVDDKIHARARGPVQILTRQP 1120

Query: 1065 VADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVG 1124
            V  R R GG++FGEMERDC+IAHGAAA L ERL   SD++++H+C  C ++ NVI  +  
Sbjct: 1121 VEGRSREGGLRFGEMERDCMIAHGAAAFLKERLMEASDAFRIHVCGVCGSM-NVIANL-- 1177

Query: 1125 GGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
               K     CR C +   I +  +PY AKLL QEL +M I  + 
Sbjct: 1178 ---KKNQFECRSCRNKTKIYQVQIPYAAKLLFQELMAMNIAPRL 1218


>gi|401407224|ref|XP_003883061.1| DNA-directed RNA polymerase subunit beta [Neospora caninum Liverpool]
 gi|325117477|emb|CBZ53029.1| DNA-directed RNA polymerase subunit beta [Neospora caninum Liverpool]
          Length = 1260

 Score =  640 bits (1652), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 419/1215 (34%), Positives = 632/1215 (52%), Gaps = 131/1215 (10%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPG--YDPSKKGEGEWRY 83
            C     SFF+ +GLV+ Q+ S+N+F+   +Q+  D      ++P   Y P ++ E    Y
Sbjct: 92   CWAVVSSFFHSHGLVNQQLESFNDFVSYKIQEIIDEHPPIEIKPTPQYRPEEEVESNVIY 151

Query: 84   ASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDK 143
              ++  Q++L++PS     G  +H ++P  AR +N+TYSS + V V+   YT        
Sbjct: 152  -RLKMDQLSLNRPSVEEKEGISKH-LWPYEARTRNLTYSSPLYVDVEQTTYTVDP----- 204

Query: 144  FKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFI 197
             +TG E+ + +   S     +++GRIP+M+KS  CW K + +      G+C +D GGYFI
Sbjct: 205  -ETGVERLVDQVTYS----RVLLGRIPMMLKSAYCWTKDLPEHDLADVGECAYDQGGYFI 259

Query: 198  IKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKG 252
            I G EKV VAQE++    ++V      +  GW    +S+ +  +         +    +G
Sbjct: 260  INGGEKVLVAQERMASNFVYVFQKKQPSKFGWVAEVRSQKEGMQATSGFAVKKRSRTGEG 319

Query: 253  ---------GEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFAS 303
                     G+ V ++ ++ TEIPI ILF ALG  SD++I+  + +  +D  +++++  S
Sbjct: 320  RGAKGGRPGGQIVAALPYIRTEIPIVILFRALGCISDRDILLRVAYDLKDPQLISLMKPS 379

Query: 304  IHD-----ADNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEECMNTYLFP 349
            + +     + + C +F   R           ++Y  +L++    P   +   C N     
Sbjct: 380  LEEGFDYGSQDVCLDFIGKRGPTVGAQREKRIQYARELLRKEVLPHVGTEAGCEN----- 434

Query: 350  SLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARK 409
                  +KA F+GYMV  LL A  GR   D+RD F  KRL++AG L+            K
Sbjct: 435  ------KKAFFIGYMVHRLLLADLGRINQDDRDHFGKKRLDMAGPLIAASFGTLYRKMIK 488

Query: 410  RMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGR 469
             + + LQR +   ++         AS +T GL    +TG W    +     +G+   L R
Sbjct: 489  DVRRILQRQVDHGKSFDVAGAIRSASQITQGLQYQIATGNWGKDKEGKIVRTGVAQVLNR 548

Query: 470  ANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLV 529
                  L  LRR    +   GK+   R  H +HWG IC   TP+G+  GLVKNL +   +
Sbjct: 549  LTFASALSHLRRLNTPLGREGKMAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMSDI 608

Query: 530  ST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRR 588
            S  S    + E L   G++ L +     +  + KVFV+G W+G   ++      LR+ RR
Sbjct: 609  SVGSATNTVHEFLVEWGLDPLEEMTPDVIKERVKVFVNGSWVGCFDEADVLCQTLRQLRR 668

Query: 589  RKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN--------MGKIKSLE--GKN-Y 637
            R ++ ++  I RD +  EV+IF DAGR +RPL VV+          G ++ L+  GK+  
Sbjct: 669  RCDISSETSIVRDLVNREVKIFTDAGRAMRPLFVVDEGTRDLVMKRGHLEELQRRGKDEK 728

Query: 638  TFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKF--THCELDMSFLLGLSC 695
            ++  L++ GIIE V  EEEE C     I   ++DI  +K + F  THCE+  S +LG+  
Sbjct: 729  SWGYLMEKGIIEFVDCEEEETCM----IAMFVEDIRSEKRLAFPYTHCEIHPSLILGVCA 784

Query: 696  GIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCL 755
             IIPF +H+ + R +YQS     QA+G  T++ + R+DTL+H L+YPQ+PL  T   +  
Sbjct: 785  SIIPFPDHNQSPRNVYQS-AMGKQAMGVYTSSFNHRMDTLAHLLYYPQKPLVCTRAME-- 841

Query: 756  GKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKA 815
                      L   EL  G NAIVA+  + GYNQEDSL+M+++S++RG+FRS   R+Y +
Sbjct: 842  ---------FLRFRELPAGINAIVAILCYSGYNQEDSLIMSQSSIDRGLFRSVFYRTYCS 892

Query: 816  EVDNKEMQVKRRSSDDMVNFGKIQS-KIGRVDSLDDDGFPFIGANLQSGDIVIGK----- 869
            E   ++       S +  +   +Q  K G    LD DG    G+ +   D++IGK     
Sbjct: 893  E--ERQQGSLMVESFEPPSIEHVQGMKRGDYSKLDADGLVEPGSRVLGDDVIIGKTSPIF 950

Query: 870  -------------------YADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQ 910
                               +A    D S+ L+ +E G+V +V+LS N  G  F+ V +R 
Sbjct: 951  DDDAGMPGAAAGIAGVPSPFAKRKRDCSLCLRSSETGVVDQVMLSVNSRGSRFTKVKVRS 1010

Query: 911  VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA 970
            VR P  GDKF+S HGQKG +G     E+ PF  +GI PD+++NPHA PSR T G L+E  
Sbjct: 1011 VRIPQTGDKFASRHGQKGTIGITYRTEDMPFNEEGITPDLIMNPHAVPSRMTIGHLVECL 1070

Query: 971  LGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSL 1030
            LGK  A  G       +  ATPF   +V  I+ +LH  G+ ++G ERLY G TG  + SL
Sbjct: 1071 LGKTAAIFGG------EGDATPFNGYAVLDISNRLHSLGYERFGNERLYHGHTGRHLPSL 1124

Query: 1031 IFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAA 1090
            +F GPT+YQRL HM +DK+  R  GPV  LTRQP+  + R GG++FGEMERDC+I+HGAA
Sbjct: 1125 VFFGPTYYQRLKHMVDDKIHARARGPVTMLTRQPMEGKSREGGLRFGEMERDCMISHGAA 1184

Query: 1091 ANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPY-CRICDSGDDIVKANVP 1149
              L ERLF  SD+Y++H+C  C  V              RG + C++CD+   I +  +P
Sbjct: 1185 HMLKERLFEQSDAYRVHVCDICGLVCTA--------DLSRGNFECKLCDNKSRISQICIP 1236

Query: 1150 YGAKLLCQELFSMGI 1164
            Y  KLL QEL +M I
Sbjct: 1237 YACKLLLQELMTMCI 1251


>gi|398365417|ref|NP_014794.3| Rpb2p [Saccharomyces cerevisiae S288c]
 gi|2507349|sp|P08518.2|RPB2_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; AltName: Full=B150; AltName:
            Full=DNA-directed RNA polymerase II 140 kDa polypeptide
 gi|14278325|pdb|1I3Q|B Chain B, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
 gi|14278336|pdb|1I50|B Chain B, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
 gi|14278366|pdb|1I6H|B Chain B, Rna Polymerase Ii Elongation Complex
 gi|20150714|pdb|1K83|B Chain B, Crystal Structure Of Yeast Rna Polymerase Ii Complexed With
            The Inhibitor Alpha Amanitin
 gi|30749617|pdb|1NIK|B Chain B, Wild Type Rna Polymerase Ii
 gi|30749738|pdb|1NT9|B Chain B, Complete 12-Subunit Rna Polymerase Ii
 gi|34810554|pdb|1PQV|B Chain B, Rna Polymerase Ii-Tfiis Complex
 gi|46015416|pdb|1R5U|B Chain B, Rna Polymerase Ii Tfiib Complex
 gi|46015781|pdb|1SFO|B Chain B, Rna Polymerase Ii Strand Separated Elongation Complex
 gi|56965912|pdb|1R9S|B Chain B, Rna Polymerase Ii Strand Separated Elongation Complex,
            Matched Nucleotide
 gi|56965924|pdb|1R9T|B Chain B, Rna Polymerase Ii Strand Separated Elongation Complex,
            Mismatched Nucleotide
 gi|56966108|pdb|1TWA|B Chain B, Rna Polymerase Ii Complexed With Atp
 gi|56966122|pdb|1TWC|B Chain B, Rna Polymerase Ii Complexed With Gtp
 gi|56966132|pdb|1TWF|B Chain B, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
 gi|56966142|pdb|1TWG|B Chain B, Rna Polymerase Ii Complexed With Ctp
 gi|56966152|pdb|1TWH|B Chain B, Rna Polymerase Ii Complexed With 2'datp
 gi|58177165|pdb|1WCM|B Chain B, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
 gi|61679445|pdb|1Y1W|B Chain B, Complete Rna Polymerase Ii Elongation Complex
 gi|61679462|pdb|1Y77|B Chain B, Complete Rna Polymerase Ii Elongation Complex With Substrate
            Analogue Gmpcpp
 gi|61679503|pdb|1Y1V|B Chain B, Refined Rna Polymerase Ii-tfiis Complex
 gi|61679516|pdb|1Y1Y|B Chain B, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
 gi|83754244|pdb|2B63|B Chain B, Complete Rna Polymerase Ii-Rna Inhibitor Complex
 gi|110590855|pdb|2B8K|B Chain B, 12-Subunit Rna Polymerase Ii
 gi|122920062|pdb|2E2H|B Chain B, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
 gi|122920077|pdb|2E2I|B Chain B, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
            Dgtp
 gi|122920092|pdb|2E2J|B Chain B, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
            Gmpcpp
 gi|122921031|pdb|2NVQ|B Chain B, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
            2'dutp
 gi|122921067|pdb|2NVT|B Chain B, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
            Gmpcpp
 gi|122921083|pdb|2NVX|B Chain B, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
            Dutp
 gi|122921098|pdb|2NVY|B Chain B, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
 gi|122921110|pdb|2NVZ|B Chain B, Rna Polymerase Ii Elongation Complex With Utp, Updated
            112006
 gi|134104675|pdb|2JA5|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex A
 gi|134104690|pdb|2JA6|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex B
 gi|134104711|pdb|2JA7|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex C
 gi|134104723|pdb|2JA7|N Chain N, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex C
 gi|134104735|pdb|2JA8|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex D
 gi|146387185|pdb|2YU9|B Chain B, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With Utp
 gi|160877774|pdb|2R7Z|B Chain B, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
            Complex
 gi|161172228|pdb|2R92|B Chain B, Elongation Complex Of Rna Polymerase Ii With Artificial Rdrp
            Scaffold
 gi|161172241|pdb|2R93|B Chain B, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
            Delta Virus-Derived Rna Stem Loop
 gi|190613463|pdb|2VUM|B Chain B, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
            Elongation Complex
 gi|194368735|pdb|3CQZ|B Chain B, Crystal Structure Of 10 Subunit Rna Polymerase Ii In Complex
            With The Inhibitor Alpha-Amanitin
 gi|224983591|pdb|3FKI|B Chain B, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
 gi|239781917|pdb|3GTG|B Chain B, Backtracked Rna Polymerase Ii Complex With 12mer Rna
 gi|239781930|pdb|3GTJ|B Chain B, Backtracked Rna Polymerase Ii Complex With 13mer Rna
 gi|239781943|pdb|3GTK|B Chain B, Backtracked Rna Polymerase Ii Complex With 18mer Rna
 gi|239781956|pdb|3GTL|B Chain B, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
            Mismatch
 gi|239781969|pdb|3GTM|B Chain B, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
 gi|239781983|pdb|3GTO|B Chain B, Backtracked Rna Polymerase Ii Complex With 15mer Rna
 gi|239781996|pdb|3GTP|B Chain B, Backtracked Rna Polymerase Ii Complex With 24mer Rna
 gi|239782009|pdb|3GTQ|B Chain B, Backtracked Rna Polymerase Ii Complex Induced By Damage
 gi|240104512|pdb|3H3V|C Chain C, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
            Active Site
 gi|254839442|pdb|3HOU|B Chain B, Complete Rna Polymerase Ii Elongation Complex I With A T-U
            Mismatch
 gi|254839457|pdb|3HOU|N Chain N, Complete Rna Polymerase Ii Elongation Complex I With A T-U
            Mismatch
 gi|254839472|pdb|3HOV|B Chain B, Complete Rna Polymerase Ii Elongation Complex Ii
 gi|254839487|pdb|3HOW|B Chain B, Complete Rna Polymerase Ii Elongation Complex Iii With A T-U
            Mismatch And A Frayed Rna 3'-Uridine
 gi|254839502|pdb|3HOX|B Chain B, Complete Rna Polymerase Ii Elongation Complex V
 gi|254839517|pdb|3HOY|B Chain B, Complete Rna Polymerase Ii Elongation Complex Vi
 gi|254839532|pdb|3HOZ|B Chain B, Complete Rna Polymerase Ii Elongation Complex Iv With A T-U
            Mismatch And A Frayed Rna 3'-Guanine
 gi|257471947|pdb|3I4M|B Chain B, 8-oxoguanine Containing Rna Polymerase Ii Elongation Complex
            D
 gi|257471962|pdb|3I4N|B Chain B, 8-oxoguanine Containing Rna Polymerase Ii Elongation Complex
            E
 gi|266618766|pdb|3K1F|B Chain B, Crystal Structure Of Rna Polymerase Ii In Complex With Tfiib
 gi|269914553|pdb|3K7A|B Chain B, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
 gi|295982476|pdb|3M3Y|B Chain B, Rna Polymerase Ii Elongation Complex C
 gi|295982489|pdb|3M4O|B Chain B, Rna Polymerase Ii Elongation Complex B
 gi|325053964|pdb|3PO2|B Chain B, Arrested Rna Polymerase Ii Elongation Complex
 gi|325053979|pdb|3PO3|B Chain B, Arrested Rna Polymerase Ii Reactivation Intermediate
 gi|326634539|pdb|3QT1|B Chain B, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
            Subunit
 gi|343197457|pdb|3RZD|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
 gi|343197469|pdb|3RZO|B Chain B, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
 gi|343197481|pdb|3S14|B Chain B, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
 gi|343197493|pdb|3S15|B Chain B, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
 gi|343197505|pdb|3S16|B Chain B, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
 gi|343197517|pdb|3S17|B Chain B, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
 gi|343197529|pdb|3S1M|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
            (Variant 1)
 gi|343197541|pdb|3S1N|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
            (Variant 2)
 gi|343197553|pdb|3S1Q|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
            Rna Soaked With Atp
 gi|343197565|pdb|3S1R|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
            Rna Soaked With Gtp
 gi|343197577|pdb|3S2D|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
            Containing A 5br- U
 gi|343781198|pdb|3S2H|B Chain B, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
            Containing A 2[prime]-Iodo Atp
 gi|353251634|pdb|3J0K|B Chain B, Orientation Of Rna Polymerase Ii Within The Human
            Vp16-Mediator-Pol Ii-Tfiif Assembly
 gi|357380837|pdb|4A3C|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
            Dna-Rna Hybrid
 gi|359546291|pdb|4A3B|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
            Dna-Rna Hybrid
 gi|359546309|pdb|4A3D|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
            Dna-Rna Hybrid
 gi|359546326|pdb|4A3E|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
            Dna-Rna Hybrid And Soaked With Ampcpp
 gi|359546343|pdb|4A3F|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
            Dna-Rna Hybrid And Soaked With Ampcpp
 gi|359546360|pdb|4A3J|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
            Dna-Rna Hybrid And Soaked With Gmpcpp
 gi|359546377|pdb|4A3K|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
            Dna-Rna Hybrid
 gi|359546393|pdb|4A3L|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
            Dna-Rna Hybrid And Soaked With Ampcpp
 gi|359546410|pdb|4A3M|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
            Dna-Rna Hybrid And Soaked With Ampcpp
 gi|374977880|pdb|4A3G|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
            Dna-Rna Hybrid
 gi|374977895|pdb|4A3I|B Chain B, Rna Polymerase Ii Binary Complex With Dna
 gi|380764980|pdb|4A93|B Chain B, Rna Polymerase Ii Elongation Complex Containing A Cpd Lesion
 gi|414145447|pdb|4BBR|B Chain B, Structure Of Rna Polymerase Ii-tfiib Complex
 gi|414145460|pdb|4BBS|B Chain B, Structure Of An Initially Transcribing Rna Polymerase Ii-
            Tfiib Complex
 gi|1293711|gb|AAC49637.1| Rpb2p polymerase [Saccharomyces cerevisiae]
 gi|1420379|emb|CAA99357.1| RPB2 [Saccharomyces cerevisiae]
 gi|151945769|gb|EDN64010.1| RNA polymerase B [Saccharomyces cerevisiae YJM789]
 gi|256272775|gb|EEU07746.1| Rpb2p [Saccharomyces cerevisiae JAY291]
 gi|259149634|emb|CAY86438.1| Rpb2p [Saccharomyces cerevisiae EC1118]
 gi|285815031|tpg|DAA10924.1| TPA: Rpb2p [Saccharomyces cerevisiae S288c]
 gi|349581308|dbj|GAA26466.1| K7_Rpb2p [Saccharomyces cerevisiae Kyokai no. 7]
 gi|392296478|gb|EIW07580.1| Rpb2p [Saccharomyces cerevisiae CEN.PK113-7D]
          Length = 1224

 Score =  640 bits (1651), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 433/1258 (34%), Positives = 650/1258 (51%), Gaps = 138/1258 (10%)

Query: 2    DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVS-FFNEYGLVSHQINSYNEFIKNGLQKAFD 60
            D D  GF D ++     + +       A +S FF E GLVS Q++S+N+F+   LQ    
Sbjct: 12   DEDPYGFEDESAPITAEDSW-------AVISAFFREKGLVSQQLDSFNQFVDYTLQDIIC 64

Query: 61   SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
                 I+E     + + +   R   + FG++ + KP     +G   H ++P+ ARL+N+T
Sbjct: 65   EDSTLILEQLAQHTTESDNISRKYEISFGKIYVTKPMVNESDGV-THALYPQEARLRNLT 123

Query: 121  YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSD-ETTNIIIGRIPVMVKSDLCW 179
            YSS + V V+ + Y    V   + K    + I +E   D E+  + IGR+P+M++S  C+
Sbjct: 124  YSSGLFVDVKKRTYEAIDVPGRELKY---ELIAEESEDDSESGKVFIGRLPIMLRSKNCY 180

Query: 180  MKGVEKGD------CDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE- 231
            +    + D      C FD GGYFII G+EKV +AQE+     + V   +    +++ +E 
Sbjct: 181  LSEATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEI 240

Query: 232  ----NKRNRLIVRL-VDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNL 286
                 K +R I  L V +   E         ++ ++  +IPI I+F ALG+  D EI+  
Sbjct: 241  RSALEKGSRFISTLQVKLYGREGSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEH 300

Query: 287  IDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES-----TEE 341
            I +   D  +L +L   + D     D       AL ++ +  +GT     +       ++
Sbjct: 301  ICYDVNDWQMLEMLKPCVEDGFVIQDR----ETALDFIGR--RGTALGIKKEKRIQYAKD 354

Query: 342  CMNTYLFP---SLHG-TKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLE 397
             +     P    L G   +KA FLGYM+  LL     R+  D+RD F  KRL+LAG LL 
Sbjct: 355  ILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLL- 413

Query: 398  RELKVHIAHARKRMAKALQRDL--YGDRTVRP-----IEYYLDASILTNGLSRAFSTGAW 450
                   A   K + K L +D+  Y  RTV       ++  ++A  +T+GL  A +TG W
Sbjct: 414  -------AQLFKTLFKKLTKDIFRYMQRTVEEAHDFNMKLAINAKTITSGLKYALATGNW 466

Query: 451  SHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLS 510
                K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   
Sbjct: 467  GEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAE 526

Query: 511  TPDGENCGLVKNLGVTGLVSTSI-LEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDW 569
            TP+G+ CGLVKNL +   +S      PI   L   GME L D   +      +VFV+G W
Sbjct: 527  TPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVW 586

Query: 570  IGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---- 625
             GV ++    +  LR  RR+ ++  +V + RD  + E++IF DAGR+ RPL +VE+    
Sbjct: 587  HGVHRNPARLMETLRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESL 646

Query: 626  -----------MGKIKSLEGKN----------YTFQALLDHGIIELVGTEEEEDCCTAWG 664
                       + K+ + E ++          YT+ +LL+ G++E +  EEEE    A  
Sbjct: 647  GHKELKVRKGHIAKLMATEYQDIEGGFEDVEEYTWSSLLNEGLVEYIDAEEEESILIAMQ 706

Query: 665  IKYLLK---------DIEDKKPIK-------FTHCELDMSFLLGLSCGIIPFANHDHARR 708
             + L           D++  K I+       FTHCE+  S +LG++  IIPF +H+ + R
Sbjct: 707  PEDLEPAEANEENDLDVDPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPR 766

Query: 709  VLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPR 768
              YQS     QA+G   TN ++R+DT+++ L+YPQ+PL  T   +            L  
Sbjct: 767  NTYQS-AMGKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAME-----------YLKF 814

Query: 769  PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRS 828
             EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   RSY  +     M +   +
Sbjct: 815  RELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITE-T 873

Query: 829  SDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---------------DS 873
             +       ++ K G  D LDDDG    G  +   D++IGK                  S
Sbjct: 874  FEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPISPDEEELGQRTAYHS 933

Query: 874  GADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
              D S  L+ TE G+V +V++++N DG  F  V +R  + P +GDKF+S HGQKG +G  
Sbjct: 934  KRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGIT 993

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
              +E+ PFT +GIVPD++INPHA PSR T   L+E  L K +AAL     SG +  A+PF
Sbjct: 994  YRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSK-VAAL-----SGNEGDASPF 1047

Query: 994  ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
               +V+ I++ L   G+   G E +Y+G TG+ + + IF GPT+YQRL HM +DK+  R 
Sbjct: 1048 TDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARA 1107

Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
             GP+  LTRQPV  R R GG++FGEMERDC+IAHGAA+ L ERL   SD++++HIC  C 
Sbjct: 1108 RGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGIC- 1166

Query: 1114 NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
             +  VI ++     +     C+ CD+  DI + ++PY AKLL QEL +M IT +  T+
Sbjct: 1167 GLMTVIAKLNHNQFE-----CKGCDNKIDIYQIHIPYAAKLLFQELMAMNITPRLYTD 1219


>gi|115385276|ref|XP_001209185.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Aspergillus
            terreus NIH2624]
 gi|114196877|gb|EAU38577.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Aspergillus
            terreus NIH2624]
          Length = 1256

 Score =  640 bits (1650), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 428/1255 (34%), Positives = 643/1255 (51%), Gaps = 141/1255 (11%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGE--WRY 83
            C     SFF+  GLVS Q++S++EFI + +Q+  +  G+  ++    P++        R 
Sbjct: 25   CWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTLDQTLPPNEDEVDPIVLRR 84

Query: 84   ASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT-QKRVTSD 142
              ++FG V L +PS   G+G     M P+ ARL+N+TY+S + + +  ++   ++R+ +D
Sbjct: 85   YELKFGTVMLSRPSVTEGDGATTI-MLPQEARLRNLTYASPLYLGITKRIMEGRERLVAD 143

Query: 143  -------------KFKTGREQYIQKEVLSDETT--NIIIGRIPVMVKSDLCWMKGVEK-- 185
                         K +    Q+ QKE+  D+     + IG++P+M+KS  C +K + +  
Sbjct: 144  RNEEEMGEPVEDRKSQGTYLQWEQKELPPDQAKEETVFIGKMPIMLKSKYCILKDLSEQA 203

Query: 186  ----GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE-----NKRN 235
                 +C +D GGYFII G+EKV +AQE+     + V   +      Y +E      K +
Sbjct: 204  LYNWNECPYDSGGYFIINGSEKVLIAQERSAGNTVQVFKKAPPSPTPYVAEIRSAVEKGS 263

Query: 236  RLI--VRLVDMSKFEDIKGG--EKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFT 290
            RL+  + L   +K +  KGG    + S   ++ T+IPI ++F ALGV SD++I+N I + 
Sbjct: 264  RLLSQLSLKLFAKGDSAKGGFGPTIRSTLPYVKTDIPIVVVFRALGVVSDEDILNHICYD 323

Query: 291  CEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES----TEECMNTY 346
              D  +L +L   I +     D       AL ++ K     +    E       E M   
Sbjct: 324  RNDTPMLEMLKPCIEEGFVIQDR----EVALDFIAKRGSSQSSMNHERRVRYAREIMQKE 379

Query: 347  LFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
            L P +  ++    +KA FLGYMV  LLQ   GRR  D+RD F  KRL+LAG LL    +V
Sbjct: 380  LLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRV 439

Query: 403  HIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISG 462
                  + + + +QR +  +R +  +   + AS LT GL  A +TG W    K     +G
Sbjct: 440  LFTRVTRDLQRYVQRCVETNREIY-LNIGIKASTLTGGLKYALATGNWGEQKKAASAKAG 498

Query: 463  IVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKN 522
            +   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLVKN
Sbjct: 499  VSQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKN 558

Query: 523  LGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVS 581
            L +   ++  +  EPI + +    ME L +          KVFV+G W+G+ +D    V+
Sbjct: 559  LALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVGIHRDPAHLVN 618

Query: 582  ELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK------------- 628
             +   RRR  +  +V + RD  + E +IF DAGR+ RPL VV+N  K             
Sbjct: 619  TMSSLRRRNMISHEVSLIRDIREREFKIFTDAGRVCRPLFVVDNDPKSENCGSLVLNKEH 678

Query: 629  IKSLEG---------------KNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYL----- 668
            I+ LE                + + +  L+  G++E V  EEEE        + L     
Sbjct: 679  IRKLEQDKELPPDLDPEERRERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPEDLEISKQ 738

Query: 669  ------------------LKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVL 710
                              ++ I  +K   +THCE+  S +LG+   IIPF +H+ + R  
Sbjct: 739  LQAGYALPEEELHDPNKRVRSILSQKAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNT 798

Query: 711  YQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPE 770
            YQS     QA+G   TN   R++T+++ L+YPQ+PL  T   +            L   E
Sbjct: 799  YQS-AMGKQAMGVFLTNFDQRMETMANLLYYPQKPLATTRSME-----------FLRFRE 846

Query: 771  LYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSD 830
            L  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y        + V  R   
Sbjct: 847  LPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERFEK 906

Query: 831  DMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD---------------SGA 875
             M +   I  + G  D LD+DG    G  +   DI+IGK A                +  
Sbjct: 907  PMRS-DTIGMRKGTYDKLDEDGIIAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKAHTKL 965

Query: 876  DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLES 935
            D S  L+ TE G+V +V++S+++D   F  V +R  + P +GDKF+S HGQKG +G    
Sbjct: 966  DVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYR 1025

Query: 936  QENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFAT 995
            QE+ PFT +G+ PD++INPHA PSR T   L+E  L K ++AL      G +  ATPF  
Sbjct: 1026 QEDMPFTREGVAPDLIINPHAIPSRMTIAHLIECQLSK-VSAL-----RGFEGDATPFTD 1079

Query: 996  PSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTG 1055
             +VD+I+  L   G+   G E +Y+G TG  + + +F+GPT+YQRL HM +DK+  R  G
Sbjct: 1080 VTVDSISRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARG 1139

Query: 1056 PVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNV 1115
            P   LTRQPV  R R GG++FGEMERDC+IAHGA+A L ERLF +SD +++HIC  C  +
Sbjct: 1140 PTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDC-GL 1198

Query: 1116 ANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
               I ++  G  +     CR+C++   I + ++PY AKLL QEL SM I  +  T
Sbjct: 1199 MTPIAKLKKGLFE-----CRLCNNKHRISQVHIPYAAKLLFQELASMNIAARMFT 1248


>gi|361128142|gb|EHL00094.1| putative DNA-directed RNA polymerase II subunit RPB2 [Glarea
            lozoyensis 74030]
          Length = 1263

 Score =  640 bits (1650), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 425/1263 (33%), Positives = 643/1263 (50%), Gaps = 148/1263 (11%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEG-EWRYA 84
            C     SFF   GLVS Q++S++EF+   +Q+  +   +  ++    PS        R  
Sbjct: 25   CWAVISSFFESKGLVSQQLDSFDEFVSTTMQELVEENSQLTLDQNNPPSSDDNPIALRRY 84

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKV--QFQVYTQKRVT-- 140
             ++FG V L +P+   G+G     M P+ ARL+N+TYSS + +++  +  V  ++ V+  
Sbjct: 85   EIKFGTVLLSRPAMTEGDGTTAV-MLPQEARLRNLTYSSPLYLEMTKKVSVAVERPVSLN 143

Query: 141  -------SDKFKTGR--------EQYIQKEVLS-----DETTNIIIGRIPVMVKSDLCWM 180
                   ++  +TG         ++   +E+ +     D+   + IG++P+M+KS  C +
Sbjct: 144  EMDEEQLAEHHRTGEFPTRLLWEDEDSGQEITAAGDKQDKIDRVYIGKLPIMLKSKYCIL 203

Query: 181  KGVEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE-- 231
            K +++       +C +D GGYF+I G+EKV +AQE+     + V    +     Y +E  
Sbjct: 204  KDLDEDELYGWNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKPLPSPTPYIAEIR 263

Query: 232  ---NKRNRLIVRLVD--MSKFEDIKGG--EKVLSVY-FLSTEIPIWILFFALGVSSDKEI 283
                K +RLI  +     +K +  +GG  + + S   ++ ++IPI ++F ALGV SD++I
Sbjct: 264  SALEKGSRLISSMTIKLFAKGDGQRGGFGQTIKSTLPYVKSDIPIAVVFRALGVVSDEDI 323

Query: 284  VNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGE---STE 340
            +N I +   D  +L +L   I +A    D       AL ++ K     T    +      
Sbjct: 324  LNHICYDRSDTQMLEMLKPCIEEAFVIQDR----EVALDFIGKRGNSNTLTRDKRVRHAR 379

Query: 341  ECMNTYLFPSLH----GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL 396
            + M   L P +        +KA FLGYMV  +LQ   GRR+CD+RD F  KRL+LAG LL
Sbjct: 380  DIMQKELLPHISQKEGSETRKAFFLGYMVHKMLQCALGRRECDDRDHFGKKRLDLAGPLL 439

Query: 397  ERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKR 456
             +  +         + K LQR +  +R    +   + ++ LTNGL  + +TG W    K 
Sbjct: 440  AKLFRNLFKRLTGDVYKYLQRCVENNREFN-LTLGVKSTTLTNGLKYSLATGNWGDQKKA 498

Query: 457  TERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGEN 516
             +  +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ 
Sbjct: 499  AQSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQA 558

Query: 517  CGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKD 575
            CGLVKNL +   V+  +  +PI E +    ME L +          KVFV+G W+GV +D
Sbjct: 559  CGLVKNLALMCYVTVGTPSDPIIEFMIQRNMEVLEEYEPLRSPNATKVFVNGVWVGVHRD 618

Query: 576  SLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------- 625
                V  ++  RR   +  +V + RD    E +IF DAGR+ RPL V++N          
Sbjct: 619  PAHLVRTVQHLRRSHLISHEVSLIRDIRDREFKIFTDAGRVCRPLFVIDNDVDSQNKGNL 678

Query: 626  -------------------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEE--------- 657
                               M   +  E   + FQ L++ G++E +  EEEE         
Sbjct: 679  VLNKDHVRRLEEDQLMPANMDLEQKAEAGYFGFQGLINAGVVEYLDAEEEETVMIVMTPE 738

Query: 658  --DCCTAWGIKYLLKDIED-------KKPIK-----FTHCELDMSFLLGLSCGIIPFANH 703
              D        Y L+  E        K P+K     +THCE+  S +LG+   IIPF +H
Sbjct: 739  DLDISRQLQAGYALRPDESGDLNKRVKAPMKPTAHIWTHCEIHPSMILGICASIIPFPDH 798

Query: 704  DHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHN 763
            + + R  YQS     QA+G   TN  +R+DT+++ L+YPQ+PL  T   +          
Sbjct: 799  NQSPRNTYQS-AMGKQAMGVFLTNFDVRMDTMANILYYPQKPLATTRSME---------- 847

Query: 764  HILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQ 823
              L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y  +     M 
Sbjct: 848  -FLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGMN 906

Query: 824  VKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH------ 877
            V  +      +   ++ K G  D LDDDG    G  +   DI+IGK A    D       
Sbjct: 907  VVEQFEKPFRS-DTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPMAPDAEELGQR 965

Query: 878  ---------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKG 928
                     S  L+ TE G+V +V++++N +G  F  V +R  + P +GDKF+S HGQKG
Sbjct: 966  TKAHTKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKG 1025

Query: 929  VLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKR 988
             +G     E+ PFT QGIVPD++INPHA PSR T   L+E  L K ++ L      GL+ 
Sbjct: 1026 TIGITYRMEDMPFTSQGIVPDLIINPHAIPSRMTIAHLIECQLSK-VSTL-----RGLEG 1079

Query: 989  YATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDK 1048
             ATPF   +VD++++ L   G+   G E +Y G TG  + + +F+GPT+YQRL HM +DK
Sbjct: 1080 DATPFTEVTVDSVSKLLRDHGYQSRGFEIMYHGHTGRKMMAQVFLGPTYYQRLRHMVDDK 1139

Query: 1049 VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHI 1108
            +  R  GPV  LTRQPV  R R GG++FGEMERDC+I+HGAAA L ERLF +SD++++H+
Sbjct: 1140 IHARARGPVQILTRQPVEGRARDGGLRFGEMERDCMISHGAAAFLKERLFEVSDAFRVHL 1199

Query: 1109 CRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
            C  C  +  + +       + +   CR C +   I + ++PY AKLL QEL SM I  + 
Sbjct: 1200 CDICGLMTPIAK------LQSQNFECRSCKNKTRISQIHIPYAAKLLFQELASMNIAARM 1253

Query: 1169 DTE 1171
             TE
Sbjct: 1254 FTE 1256


>gi|134079870|emb|CAK41002.1| unnamed protein product [Aspergillus niger]
 gi|350637591|gb|EHA25948.1| hypothetical protein ASPNIDRAFT_54460 [Aspergillus niger ATCC 1015]
          Length = 1256

 Score =  640 bits (1650), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 431/1266 (34%), Positives = 643/1266 (50%), Gaps = 143/1266 (11%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSK 75
            D+ E      C     SFF+  GLVS Q++S++EFI + +Q+  +  G+  ++    PS+
Sbjct: 15   DMDEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTLDQTLPPSE 74

Query: 76   KGEGEW--RYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQV 133
                    R   ++FG V L +PS   G+G     M P+ ARL+N+TY+S + + V  ++
Sbjct: 75   DEVDPVVVRRYELKFGTVMLSRPSVTEGDGATTI-MLPQEARLRNLTYASPLYLGVTKKI 133

Query: 134  YTQKR-------------VTSDKFKTGRE-QYIQKEVLSDETT--NIIIGRIPVMVKSDL 177
               +               T DK   G   Q+ QKE+ +D+     + IG++P+M+KS  
Sbjct: 134  MEGRERLVADRDDDDMAESTEDKKAHGTYLQWEQKELPADQAKEETVFIGKMPIMLKSKY 193

Query: 178  CWMKGVEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKS 230
            C +K + +       +C +D GGYFII G+EKV +AQE+     + V   +      Y +
Sbjct: 194  CILKDLSEQALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNTVQVFKKAPPSPTPYVA 253

Query: 231  E-----NKRNRLI--VRLVDMSKFEDIKGG--EKVLSVY-FLSTEIPIWILFFALGVSSD 280
            E      K +RL+  + L   +K +  KGG    + S   ++ T+IPI ++F ALGV SD
Sbjct: 254  EIRSAVEKGSRLLSQLSLKLFAKGDSAKGGFGPTIRSTLPYVKTDIPIVVVFRALGVVSD 313

Query: 281  KEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES-- 338
            ++I+N I +   D  +L +L   I +     D       AL ++ K     +    E   
Sbjct: 314  EDILNHICYDRNDTPMLEMLKPCIEEGFVIQDR----EVALDFIAKRGSSQSSMNHERRV 369

Query: 339  --TEECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELA 392
                E M     P +  ++    +KA FLGYMV  LLQ   GRR  D+RD F  KRL+LA
Sbjct: 370  RYAREIMQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLA 429

Query: 393  GELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSH 452
            G LL    +V      + + + +QR +  +R +  +   + AS LT GL  A +TG W  
Sbjct: 430  GPLLANLFRVLFTRVTRDLQRYVQRCVETNREIY-LNIGIKASTLTGGLKYALATGNWGE 488

Query: 453  PFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTP 512
              K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP
Sbjct: 489  QKKAASAKAGVSQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETP 548

Query: 513  DGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIG 571
            +G+ CGLVKNL +   ++  +  EPI + +    ME L +          KVFV+G W+G
Sbjct: 549  EGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVG 608

Query: 572  VCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK--- 628
            + +D    V+ +   RRR  +  +V + RD  + E +IF DAGR+ RPL VV+N  K   
Sbjct: 609  IHRDPAHLVNTMLSLRRRNMISHEVSLIRDIREREFKIFTDAGRVCRPLFVVDNDPKSEN 668

Query: 629  ----------IKSLEG---------------KNYTFQALLDHGIIELVGTEEEEDCCTAW 663
                      I+ LE                + + +  L+  G++E V  EEEE      
Sbjct: 669  CGSLVLNKEHIRKLEQDKDLPPDLDPEDRRERYFGWDGLVKSGVVEYVDAEEEETIMIVM 728

Query: 664  GIKYL-----------------------LKDIEDKKPIKFTHCELDMSFLLGLSCGIIPF 700
              + L                       ++ I  +K   +THCE+  S +LG+   IIPF
Sbjct: 729  TPEDLEISKQLQAGYALPEEELHDPNKRVRSILSQKAHTWTHCEIHPSMILGVCASIIPF 788

Query: 701  ANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGY 760
             +H+ + R  YQS     QA+G   TN   R++T+++ L+YPQ+PL  T   +       
Sbjct: 789  PDHNQSPRNTYQS-AMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSME------- 840

Query: 761  GHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNK 820
                 L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y       
Sbjct: 841  ----FLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMV 896

Query: 821  EMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKY---------- 870
             + V  R    M +   I  + G  D LD+DG    G  +   DI+IGK           
Sbjct: 897  GLTVVERFEKPMRS-DTIGMRKGTYDKLDEDGIIAPGVRVSGEDIIIGKTAPLAPEAEEL 955

Query: 871  -----ADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHG 925
                 A +  D S  L+ TE G+V +V++S+++D   F  V +R  + P +GDKF+S HG
Sbjct: 956  GQRTKAHTKLDVSTPLRSTENGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHG 1015

Query: 926  QKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSG 985
            QKG +G    QE+ PFT +G+ PD++INPHA PSR T   L+E  L K +++L      G
Sbjct: 1016 QKGTIGITYRQEDMPFTREGVCPDLIINPHAIPSRMTIAHLIECQLSK-VSSL-----RG 1069

Query: 986  LKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMS 1045
             +  ATPF   +VD+I+  L   G+   G E +Y+G TG  + + +F+GPT+YQRL HM 
Sbjct: 1070 FEGDATPFTDVTVDSISRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMV 1129

Query: 1046 EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQ 1105
            +DK+  R  GP   LTRQPV  R R GG++FGEMERDC+IAHGA+A L ERLF +SD ++
Sbjct: 1130 DDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFR 1189

Query: 1106 MHICRKCKNVANVIQRVVGGGRKVRGPY-CRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
            +HIC  C  +  V        +  +G + CR+C++   I + ++PY AKLL QEL SM I
Sbjct: 1190 VHICDDCGLMTPV-------AKLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELASMNI 1242

Query: 1165 TLKFDT 1170
              +  T
Sbjct: 1243 AARMFT 1248


>gi|237831495|ref|XP_002365045.1| DNA-directed RNA polymerase II subunit RPB2, putative [Toxoplasma
            gondii ME49]
 gi|211962709|gb|EEA97904.1| DNA-directed RNA polymerase II subunit RPB2, putative [Toxoplasma
            gondii ME49]
 gi|221487105|gb|EEE25351.1| DNA-directed RNA polymerase II subunit, putative [Toxoplasma gondii
            GT1]
 gi|221506791|gb|EEE32408.1| DNA-directed RNA polymerase II subunit, putative [Toxoplasma gondii
            VEG]
          Length = 1259

 Score =  640 bits (1650), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 418/1215 (34%), Positives = 631/1215 (51%), Gaps = 131/1215 (10%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFG--ETIVEPGYDPSKKGEGEWRY 83
            C     SFF+ +GLV+ Q+ S+N+F+   +Q+  D     E    P Y P ++ E    Y
Sbjct: 91   CWAVVSSFFHSHGLVNQQLESFNDFVSYKIQEIIDEHPPIEIRPTPQYRPEEEVESNVIY 150

Query: 84   ASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDK 143
              ++  Q++L++PS     G  +H ++P  AR +N+TYSS + V V+   YT        
Sbjct: 151  -RLKMDQLSLNRPSVEEKEGISKH-LWPYEARTRNLTYSSPLYVDVEQTTYTVDP----- 203

Query: 144  FKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFI 197
             +TG E+ + +   S     +++GRIP+M+KS  CW K + +      G+C +D GGYFI
Sbjct: 204  -ETGAERLVDQVTYS----RVLLGRIPMMLKSAYCWTKDLPEHDLADVGECAYDQGGYFI 258

Query: 198  IKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENK----RNRLIVRLVDMSKFE 248
            I G EKV VAQE++    ++V      +  GW    +S+ +     +   V+    +  E
Sbjct: 259  INGGEKVLVAQERMASNFVYVFQKKQPSKFGWVAEVRSQKEGMQATSGFAVKKRSRTGGE 318

Query: 249  DIKGG----EKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASI 304
              KGG    + V ++ ++ TEIPI ILF ALG  SD++I+  + +  +D  ++ ++  S+
Sbjct: 319  GRKGGRPGGQIVAALPYIRTEIPIVILFRALGCISDRDILLRVAYDLKDPQLIALMKPSL 378

Query: 305  -----HDADNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEECMNTYLFPS 350
                 + + + C +F   R           ++Y  +L++    P   +   C N      
Sbjct: 379  EEGFDYSSQDVCLDFIGKRGPTVGAQREKRIQYARELLRKEVLPHVGTEVGCEN------ 432

Query: 351  LHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKR 410
                 +KA ++GYMV  LL A  GR   D+RD F  KRL++AG L+            K 
Sbjct: 433  -----KKAFYIGYMVHRLLLADLGRINQDDRDHFGKKRLDMAGPLIAASFGTLYRKMIKD 487

Query: 411  MAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRA 470
            + + LQR +   ++         AS +T GL    +TG W    +     +G+   L R 
Sbjct: 488  VRRILQRQVDHGKSFDVAGAIRSASQITQGLQYQIATGNWGKDKEGKIVRTGVAQVLNRL 547

Query: 471  NPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVS 530
                 L  LRR    +   GK+   R  H +HWG IC   TP+G+  GLVKNL +   +S
Sbjct: 548  TFASALSHLRRLNTPLGREGKMAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMSDIS 607

Query: 531  T-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRR 589
              S    + E L   G++ L +     +  + KVFV+G W+G   ++      LR+ RRR
Sbjct: 608  VGSATNTVHEFLVEWGLDPLEEMTPDVIKERVKVFVNGSWVGCFDEADVLCQTLRQLRRR 667

Query: 590  KELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE-----------NMGKIKSLEGKNYT 638
             ++ ++  I RD +  EV+IF DAGR +RPL VV+           ++ +++       +
Sbjct: 668  CDISSETSIVRDLVNREVKIFTDAGRAMRPLFVVDEGTRDLVMKRCHLEELQRRGKDEKS 727

Query: 639  FQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDI--EDKKPIKFTHCELDMSFLLGLSCG 696
            +  L++ GIIE V  EEEE C     I   ++DI  E ++   +THCE+  S +LG+   
Sbjct: 728  WGYLMEKGIIEFVDCEEEETCM----IAMFVEDIRSEKRQAFPYTHCEIHPSLILGVCAS 783

Query: 697  IIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLG 756
            IIPF +H+ + R +YQS     QA+G  T++ + R+DTL+H L+YPQ+PL  T   +   
Sbjct: 784  IIPFPDHNQSPRNVYQS-AMGKQAMGVYTSSFNHRMDTLAHLLYYPQKPLVCTRAME--- 839

Query: 757  KPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAE 816
                     L   EL  G NAIVA+  + GYNQEDSL+M+++S++RG+FRS   R+Y +E
Sbjct: 840  --------FLRFRELPAGINAIVAILCYSGYNQEDSLIMSQSSIDRGLFRSVFYRTYCSE 891

Query: 817  VDNKEMQVKRRSSDDMVNFGKIQS-KIGRVDSLDDDGFPFIGANLQSGDIVIGK------ 869
               ++       S +  +   +Q  K G    LD DG    G+ +   D++IGK      
Sbjct: 892  --ERQQGSLMVESFEPPSIEHVQGMKRGDYSKLDADGLVEPGSRVLGDDVIIGKTSPLFD 949

Query: 870  -------------------YADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQ 910
                               +A    D S+ L+ +E G+V +V+LS N+ G  F+ V +R 
Sbjct: 950  DDTGMPGGAGAGPGGVPSPFAKRKRDCSLCLRSSETGVVDQVMLSVNNRGSRFTKVKVRS 1009

Query: 911  VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA 970
            VR P  GDKF+S HGQKG +G     E+ PF  +GI PD+++NPHA PSR T G L+E  
Sbjct: 1010 VRIPQTGDKFASRHGQKGTIGITYRTEDMPFNEEGITPDLIMNPHAVPSRMTIGHLVECL 1069

Query: 971  LGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSL 1030
            LGK  A  G       +  ATPF   +V  I+ +LH  G+ ++G ERLY G TG  + SL
Sbjct: 1070 LGKTAAIFGG------EGDATPFNGYAVLDISNRLHSLGYERFGNERLYHGHTGRHLPSL 1123

Query: 1031 IFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAA 1090
            IF GPT+YQRL HM +DK+  R  GPV  LTRQP+  + R GG++FGEMERDC+I+HGAA
Sbjct: 1124 IFFGPTYYQRLKHMVDDKIHARARGPVTMLTRQPMEGKSREGGLRFGEMERDCMISHGAA 1183

Query: 1091 ANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPY-CRICDSGDDIVKANVP 1149
              L ERLF  SD+Y++H+C  C  V              RG + C++CD+   I +  +P
Sbjct: 1184 HMLKERLFEQSDAYRVHVCDICGLVCT--------ADLSRGNFECKLCDNKSRISQICIP 1235

Query: 1150 YGAKLLCQELFSMGI 1164
            Y  KLL QEL +M I
Sbjct: 1236 YACKLLLQELMAMCI 1250


>gi|149244118|ref|XP_001526602.1| DNA-directed RNA polymerase II polypeptide 2 [Lodderomyces
            elongisporus NRRL YB-4239]
 gi|146448996|gb|EDK43252.1| DNA-directed RNA polymerase II polypeptide 2 [Lodderomyces
            elongisporus NRRL YB-4239]
          Length = 1238

 Score =  639 bits (1649), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 424/1248 (33%), Positives = 652/1248 (52%), Gaps = 146/1248 (11%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIV-EPGYDPSKKGEGEWRYA 84
            C     SFF E GLVS Q++S++EFI++ +Q+        I+ +P    S+K     RY 
Sbjct: 27   CWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSHLILDQPAQHTSEKDHDNKRY- 85

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT---QKRVTS 141
             + FG++ + KP+   G+G   H MFP+ ARL+N+TYSS + V +  +V+T    KR+  
Sbjct: 86   EINFGKIYISKPTQTEGDGT-THPMFPQEARLRNLTYSSPIYVDMTKRVFTSDDNKRI-- 142

Query: 142  DKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGY 195
            D      E  ++ E    +T+ + +G++P+M++S  C ++ +      E  +C +D GGY
Sbjct: 143  DNELEWHEIDVEGE---KKTSKVYLGKVPIMLRSKFCMLRDLGEHEFYELKECPYDMGGY 199

Query: 196  FIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE-----NKRNRLIVRLVDMSKFED 249
            F+I G+EKV +AQE+     + V   +    +++ +E      K +RLI  +       D
Sbjct: 200  FVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSAIEKGSRLISSMQIKLYGRD 259

Query: 250  IKGGEK---VLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFAS--- 303
             KG        ++ ++  +IPI I+F ALG+  D +I+  I +   D  +L +L      
Sbjct: 260  EKGTSARTIKATLPYIKEDIPIVIVFRALGIVPDGDILEHICYDQNDWQMLEMLKPCVEE 319

Query: 304  ---IHDADNKCDEF-RKG------RNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHG 353
               I + +   D   R+G         ++Y   +++     P  + EE   T        
Sbjct: 320  GFVIQEREVALDFIGRRGVLGIRREKRIQYAKDILQKELL-PNITQEEGFET-------- 370

Query: 354  TKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAK 413
              +KA FLGYMV  LL     R++ D+RD F  KRL+LAG LL    ++      K +  
Sbjct: 371  --RKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYN 428

Query: 414  ALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPL 473
             +QR +  D+    +   + +  +T+GL  + +TG W    K     +G+   L R    
Sbjct: 429  YMQRCVENDKEFN-LTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYS 487

Query: 474  QTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-S 532
             TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  +
Sbjct: 488  STLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGT 547

Query: 533  ILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL 592
              +PI   L + G+E L D    +     +VFV+G W+GV ++  S V  +R  RR  ++
Sbjct: 548  PSDPILSFLRDWGLEPLEDYTPANSPDVTRVFVNGVWVGVHREPASLVDYMRDLRRNGDI 607

Query: 593  PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIK------------SLEG 634
              +V + RD  + E +IF DAGR+ RPL +V++       G +K            S EG
Sbjct: 608  SPEVSLIRDIREKEFKIFTDAGRVYRPLFIVDDKPDSATKGDLKLQKEHVNQLLESSYEG 667

Query: 635  KN---------YTFQALLDHGIIELVGTEEEEDCCTAW------------------GIKY 667
             +         YT+ +L+  GI+E V  EEEE    A                    ++ 
Sbjct: 668  YDEDDEDAAPKYTWSSLVKEGIVEYVDAEEEETIMIAMTPDDLEASKSSLTETQQQNLQM 727

Query: 668  LLKDIEDKKPIK---------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSS 718
              ++++  K IK         FTHCE+  S +LG++  IIPF +H+ + R  YQS     
Sbjct: 728  EEQELDPAKRIKPTNSSNTHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQS-AMGK 786

Query: 719  QAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAI 778
            QA+G   TN S+R+DT+++ L+YPQ+PL  T              H+  R EL  GQNAI
Sbjct: 787  QAMGVFLTNYSVRMDTMANILYYPQKPLATTR----------AMEHLKFR-ELPAGQNAI 835

Query: 779  VAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKI 838
            VA+  + GYNQEDS++MN++S++RG+FRS   RSY  +++ ++      + +       +
Sbjct: 836  VAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSY-MDLEKRQGMKALETFEKPSRSDTL 894

Query: 839  QSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---------------DSGADHSIKLKH 883
            + K G  + LDDDG    G  +   DI+IGK                  +  D S  L+ 
Sbjct: 895  RLKHGTYEKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRS 954

Query: 884  TERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTI 943
            TE G+V +V+L++N DG  F  V +R  + P +GDKF+S HGQKG +G     E+ PFT 
Sbjct: 955  TESGIVDQVLLTTNGDGAKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFTS 1014

Query: 944  QGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITE 1003
            +G+VPD++INPHA PSR T   L+E  L K ++AL     SGL+  A+PF   + +A+++
Sbjct: 1015 EGVVPDLIINPHAIPSRMTVAHLIECLLSK-VSAL-----SGLEGDASPFTDVTAEAVSK 1068

Query: 1004 QLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQ 1063
             L   G+   G E +Y+G TG+ + + +F GPT+YQRL HM +DK+  R  GPV  LTRQ
Sbjct: 1069 LLREHGYQSRGFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQ 1128

Query: 1064 PVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVV 1123
            PV  R R GG++FGEMERDC+IAHGAA  L ERL   SD++++H+C  C      +  V+
Sbjct: 1129 PVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGVCG-----LMSVI 1183

Query: 1124 GGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
               +K +   CR C +  +I + ++PY AKLL QEL +M IT +  TE
Sbjct: 1184 ANLKKNQFE-CRSCKNKTNIYQIHIPYAAKLLFQELMAMNITPRLYTE 1230


>gi|238498864|ref|XP_002380667.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus flavus NRRL3357]
 gi|83774211|dbj|BAE64336.1| unnamed protein product [Aspergillus oryzae RIB40]
 gi|220693941|gb|EED50286.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus flavus NRRL3357]
 gi|391868073|gb|EIT77296.1| RNA polymerase II, second largest subunit [Aspergillus oryzae 3.042]
          Length = 1254

 Score =  639 bits (1648), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 431/1268 (33%), Positives = 643/1268 (50%), Gaps = 149/1268 (11%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSK 75
            D+ E      C     SFF+  GLVS Q++S++EFI + +Q+  +  G+  ++    P +
Sbjct: 15   DMEEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTLDQTLPPDE 74

Query: 76   KGEGEW--RYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQV 133
                    R   ++FG V L +PS   G+G     M P+ ARL+N+TY+S + + +  ++
Sbjct: 75   DEVDPVVVRRYELKFGTVMLSRPSVTEGDGATTI-MLPQEARLRNLTYASPLYLGITKRI 133

Query: 134  YTQKRVT-------------SDKFKTGREQYIQKEVLSDETT--NIIIGRIPVMVKSDLC 178
               +  +               K +    Q+ QKE+ +D+     + IG++P+M+KS  C
Sbjct: 134  MEGRERSVADRDDEEIEEDEDRKARGTYLQWEQKELPADQAKEETVFIGKVPIMLKSKYC 193

Query: 179  WMKGVEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE 231
             +K + +       +C +D GGYFII G+EKV +AQE+     + V   +      Y +E
Sbjct: 194  ILKDLSEQALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNTVQVFKKAPPSPTPYVAE 253

Query: 232  -----NKRNRLI--VRLVDMSKFEDIKGG--EKVLSVY-FLSTEIPIWILFFALGVSSDK 281
                  K +RL+  + L   +K +  KGG    + S   ++ T+IPI ++F ALGV SD+
Sbjct: 254  IRSAVEKGSRLLSQLSLKLFAKGDSAKGGFGPTIRSTLPYVKTDIPIVVVFRALGVVSDE 313

Query: 282  EIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES--- 338
            +I+N I +   D  +L +L   I +     D       AL ++ K     +    E    
Sbjct: 314  DILNHICYDRNDTPMLEMLKPCIEEGFVIQDR----EVALDFIAKRGSSQSSMNHERRVR 369

Query: 339  -TEECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAG 393
               E M   L P +  ++    +KA FLGYMV  LLQ   GRR  D+RD F  KRL+LAG
Sbjct: 370  YAREIMQKELLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAG 429

Query: 394  ELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLD----ASILTNGLSRAFSTGA 449
             LL    +V      + + + +QR +  +R     E YL+    AS LT GL  A +TG 
Sbjct: 430  PLLANLFRVLFTRVTRDLQRYVQRCVETNR-----EIYLNIGIKASTLTGGLKYALATGN 484

Query: 450  WSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFL 509
            W    K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C  
Sbjct: 485  WGEQKKAASAKAGVSQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPA 544

Query: 510  STPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGD 568
             TP+G+ CGLVKNL +   V+  +  EPI + +    ME L +          KVFV+G 
Sbjct: 545  ETPEGQACGLVKNLALMCYVTVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNATKVFVNGV 604

Query: 569  WIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK 628
            W+G+ +D    V+ ++  RRR  +  +V + RD  + E +IF DAGR+ RPL V++N  K
Sbjct: 605  WVGIHRDPAHLVNTMQSLRRRNMISHEVSLIRDIREREFKIFTDAGRVCRPLFVIDNDPK 664

Query: 629  -------------IKSLEG---------------KNYTFQALLDHGIIELVGTEEEEDCC 660
                         I+ LE                + + +  L+  G++E V  EEEE   
Sbjct: 665  SENCGGLVLNKEHIRKLEQDKELPPDLDPEDRRERYFGWDGLVRSGVVEYVDAEEEETIM 724

Query: 661  TAWGIKYL----------------------LKDIEDKKPIKFTHCELDMSFLLGLSCGII 698
             +   + L                      ++ I  +K   +THCE+  S +LG+   II
Sbjct: 725  ISMTPEDLEISKQLQAGYALPEEELDPNKRVRSILSQKAHTWTHCEIHPSMILGVCASII 784

Query: 699  PFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKP 758
            PF +H+ + R  YQS     QA+G   TN   R++T+++ L+YPQ+PL  T   +     
Sbjct: 785  PFPDHNQSPRNTYQS-AMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSME----- 838

Query: 759  GYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVD 818
                   L   EL  GQNAIVA+  + GYNQEDS+VMN++S++RG+FRS   R+Y     
Sbjct: 839  ------FLRFRELPAGQNAIVAIACYSGYNQEDSVVMNQSSIDRGLFRSLFYRTYTDSEK 892

Query: 819  NKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH- 877
               + V  R    M     I  + G  D LD+DG    G  +   DI+IGK A    D  
Sbjct: 893  MVGLTVVERFEKPMRQ-DTIGMRKGTYDKLDEDGIIAPGVRVSGEDIIIGKTAPLAPDAE 951

Query: 878  --------------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSM 923
                          S  L+ TE G+V +V++S+++D   F  V +R  + P +GDKF+S 
Sbjct: 952  ELGQRTKAHTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASR 1011

Query: 924  HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGIC 983
            HGQKG +G    QE+ PF+ +G+ PD+VINPHA PSR T   L+E  L K ++AL     
Sbjct: 1012 HGQKGTIGITYRQEDMPFSREGVAPDLVINPHAIPSRMTIAHLIECQLSK-VSAL----- 1065

Query: 984  SGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIH 1043
             G +  ATPF   +VD+++  L   G+   G E +Y+G TG  + + +F+GPT+YQRL H
Sbjct: 1066 RGFEGDATPFTDVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRH 1125

Query: 1044 MSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDS 1103
            M +DK+  R  GP   LTRQPV  R R GG++FGEMERDC+IAHGA+A L ERLF +SD 
Sbjct: 1126 MVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDP 1185

Query: 1104 YQMHICRKCKNVANVIQRVVGGGRKVRGPY-CRICDSGDDIVKANVPYGAKLLCQELFSM 1162
            +++HIC  C  +  V        +  +G + CR+C++   I + ++PY AKLL QEL SM
Sbjct: 1186 FRVHICDDCGLMTPV-------AKLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELASM 1238

Query: 1163 GITLKFDT 1170
             I  +  T
Sbjct: 1239 NIAARMFT 1246


>gi|317033268|ref|XP_001395161.2| DNA-directed RNA polymerase II subunit RPB2 [Aspergillus niger CBS
            513.88]
          Length = 1231

 Score =  639 bits (1648), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 431/1258 (34%), Positives = 640/1258 (50%), Gaps = 152/1258 (12%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSK 75
            D+ E      C     SFF+  GLVS Q++S++EFI + +Q+  +  G+  ++    PS+
Sbjct: 15   DMDEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTLDQTLPPSE 74

Query: 76   KGEGEW--RYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQV 133
                    R   ++FG V L +PS   G+G     M P+ ARL+N+TY+S + + V    
Sbjct: 75   DEVDPVVVRRYELKFGTVMLSRPSVTEGDGATTI-MLPQEARLRNLTYASPLYLGV---- 129

Query: 134  YTQKRVTSDKFKTGREQYI----QKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK---- 185
                   + K   GRE+ +      ++  +ET  + IG++P+M+KS  C +K + +    
Sbjct: 130  -------TKKIMEGRERLVADRDDDDMAKEET--VFIGKMPIMLKSKYCILKDLSEQALY 180

Query: 186  --GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE-----NKRNRL 237
               +C +D GGYFII G+EKV +AQE+     + V   +      Y +E      K +RL
Sbjct: 181  NWNECPYDSGGYFIINGSEKVLIAQERSAGNTVQVFKKAPPSPTPYVAEIRSAVEKGSRL 240

Query: 238  I--VRLVDMSKFEDIKGG--EKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCE 292
            +  + L   +K +  KGG    + S   ++ T+IPI ++F ALGV SD++I+N I +   
Sbjct: 241  LSQLSLKLFAKGDSAKGGFGPTIRSTLPYVKTDIPIVVVFRALGVVSDEDILNHICYDRN 300

Query: 293  DCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES----TEECMNTYLF 348
            D  +L +L   I +     D       AL ++ K     +    E       E M     
Sbjct: 301  DTPMLEMLKPCIEEGFVIQDR----EVALDFIAKRGSSQSSMNHERRVRYAREIMQKEFL 356

Query: 349  PSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHI 404
            P +  ++    +KA FLGYMV  LLQ   GRR  D+RD F  KRL+LAG LL    +V  
Sbjct: 357  PHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRVLF 416

Query: 405  AHARKRMAKALQRDLYGDRTVRPIEYYLD----ASILTNGLSRAFSTGAWSHPFKRTERI 460
                + + + +QR +  +R     E YL+    AS LT GL  A +TG W    K     
Sbjct: 417  TRVTRDLQRYVQRCVETNR-----EIYLNIGIKASTLTGGLKYALATGNWGEQKKAASAK 471

Query: 461  SGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLV 520
            +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLV
Sbjct: 472  AGVSQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLV 531

Query: 521  KNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSF 579
            KNL +   ++  +  EPI + +    ME L +          KVFV+G W+G+ +D    
Sbjct: 532  KNLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVGIHRDPAHL 591

Query: 580  VSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK----------- 628
            V+ +   RRR  +  +V + RD  + E +IF DAGR+ RPL VV+N  K           
Sbjct: 592  VNTMLSLRRRNMISHEVSLIRDIREREFKIFTDAGRVCRPLFVVDNDPKSENCGSLVLNK 651

Query: 629  --IKSLEG---------------KNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYL--- 668
              I+ LE                + + +  L+  G++E V  EEEE        + L   
Sbjct: 652  EHIRKLEQDKDLPPDLDPEDRRERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPEDLEIS 711

Query: 669  --------------------LKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARR 708
                                ++ I  +K   +THCE+  S +LG+   IIPF +H+ + R
Sbjct: 712  KQLQAGYALPEEELHDPNKRVRSILSQKAHTWTHCEIHPSMILGVCASIIPFPDHNQSPR 771

Query: 709  VLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPR 768
              YQS     QA+G   TN   R++T+++ L+YPQ+PL  T   +            L  
Sbjct: 772  NTYQS-AMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSME-----------FLRF 819

Query: 769  PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRS 828
             EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y        + V  R 
Sbjct: 820  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERF 879

Query: 829  SDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKY---------------ADS 873
               M +   I  + G  D LD+DG    G  +   DI+IGK                A +
Sbjct: 880  EKPMRS-DTIGMRKGTYDKLDEDGIIAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKAHT 938

Query: 874  GADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
              D S  L+ TE G+V +V++S+++D   F  V +R  + P +GDKF+S HGQKG +G  
Sbjct: 939  KLDVSTPLRSTENGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 998

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
              QE+ PFT +G+ PD++INPHA PSR T   L+E  L K +++L      G +  ATPF
Sbjct: 999  YRQEDMPFTREGVCPDLIINPHAIPSRMTIAHLIECQLSK-VSSL-----RGFEGDATPF 1052

Query: 994  ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
               +VD+I+  L   G+   G E +Y+G TG  + + +F+GPT+YQRL HM +DK+  R 
Sbjct: 1053 TDVTVDSISRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARA 1112

Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
             GP   LTRQPV  R R GG++FGEMERDC+IAHGA+A L ERLF +SD +++HIC  C 
Sbjct: 1113 RGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCG 1172

Query: 1114 NVANVIQRVVGGGRKVRGPY-CRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
             +  V        +  +G + CR+C++   I + ++PY AKLL QEL SM I  +  T
Sbjct: 1173 LMTPV-------AKLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELASMNIAARMFT 1223


>gi|358374560|dbj|GAA91151.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Aspergillus
            kawachii IFO 4308]
          Length = 1256

 Score =  639 bits (1648), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 430/1266 (33%), Positives = 645/1266 (50%), Gaps = 143/1266 (11%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSK 75
            D+ E      C     SFF+  GLVS Q++S++EFI + +Q+  +  G+  ++    PS+
Sbjct: 15   DMDEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTLDQTLPPSE 74

Query: 76   KGEGEW--RYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQV 133
                    R   ++FG V L +PS   G+G     M P+ ARL+N+TY+S + + V  ++
Sbjct: 75   DEVDPVVVRRYELKFGTVMLSRPSVTEGDGATTI-MLPQEARLRNLTYASPLYLGVTKKI 133

Query: 134  YT-QKRVTSD-------------KFKTGREQYIQKEVLSDETT--NIIIGRIPVMVKSDL 177
               ++R+ +D             K      Q+ QKE+ +D+     + IG++P+M+KS  
Sbjct: 134  MEGRERLVADRDEDDMGESNEDRKAHGTYLQWEQKELPADQAKEETVFIGKMPIMLKSKY 193

Query: 178  CWMKGVEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKS 230
            C +K + +       +C +D GGYFII G+EKV +AQE+     + V   +      Y +
Sbjct: 194  CILKDLSEQALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNTVQVFKKAPPSPTPYVA 253

Query: 231  E-----NKRNRLI--VRLVDMSKFEDIKGG--EKVLSVY-FLSTEIPIWILFFALGVSSD 280
            E      K +RL+  + L   +K +  KGG    + S   ++ T+IPI ++F ALGV SD
Sbjct: 254  EIRSAVEKGSRLLSQLSLKLFAKGDSAKGGFGPTIRSTLPYVKTDIPIVVVFRALGVVSD 313

Query: 281  KEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES-- 338
            ++I+N I +   D  +L +L   I +     D       AL ++ K     +    E   
Sbjct: 314  EDILNHICYDRNDTPMLEMLKPCIEEGFVIQDR----EVALDFIAKRGSSQSSMNHERRV 369

Query: 339  --TEECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELA 392
                E M     P +  ++    +KA FLGYMV  LLQ   GRR  D+RD F  KRL+LA
Sbjct: 370  RYAREIMQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLA 429

Query: 393  GELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSH 452
            G LL    +V      + + + +QR +  +R +  +   + AS LT GL  A +TG W  
Sbjct: 430  GPLLANLFRVLFTRVTRDLQRYVQRCVETNREIY-LNIGIKASTLTGGLKYALATGNWGE 488

Query: 453  PFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTP 512
              K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP
Sbjct: 489  QKKAASAKAGVSQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETP 548

Query: 513  DGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIG 571
            +G+ CGLVKNL +   ++  +  EPI + +    ME L +          KVFV+G W+G
Sbjct: 549  EGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVG 608

Query: 572  VCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK--- 628
            + +D    V+ +   RRR  +  +V + RD  + E +IF DAGR+ RPL VV+N  K   
Sbjct: 609  IHRDPAHLVNTMLSLRRRNMISHEVSLIRDIREREFKIFTDAGRVCRPLYVVDNDPKSEN 668

Query: 629  ----------IKSLEG---------------KNYTFQALLDHGIIELVGTEEEEDCCTAW 663
                      I+ LE                + + +  L+  G++E V  EEEE      
Sbjct: 669  CGSLVLNKEHIRKLEQDKDLPPDLDPEDRRERYFGWDGLVKSGVVEYVDAEEEETIMIVM 728

Query: 664  GIKYL-----------------------LKDIEDKKPIKFTHCELDMSFLLGLSCGIIPF 700
              + L                       ++ I  +K   +THCE+  S +LG+   IIPF
Sbjct: 729  TPEDLEISKQLQAGYALPEEELHDPNKRVRSILSQKAHTWTHCEIHPSMILGVCASIIPF 788

Query: 701  ANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGY 760
             +H+ + R  YQS     QA+G   TN   R++T+++ L+YPQ+PL  T   +       
Sbjct: 789  PDHNQSPRNTYQS-AMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSME------- 840

Query: 761  GHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNK 820
                 L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y       
Sbjct: 841  ----FLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMV 896

Query: 821  EMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKY---------- 870
             + V  R    M +   I  + G  D LD+DG    G  +   DI+IGK           
Sbjct: 897  GLTVVERFEKPMRS-DTIGMRKGTYDKLDEDGIIAPGVRVSGEDIIIGKTAPLAPEAEEL 955

Query: 871  -----ADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHG 925
                 A +  D S  L+ TE G+V +V++S+++D   F  V +R  + P +GDKF+S HG
Sbjct: 956  GQRTKAHTKLDVSTPLRSTENGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHG 1015

Query: 926  QKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSG 985
            QKG +G    QE+ PFT +G+ PD++INPHA PSR T   L+E  L K +++L      G
Sbjct: 1016 QKGTIGITYRQEDMPFTREGVCPDLIINPHAIPSRMTIAHLIECQLSK-VSSL-----RG 1069

Query: 986  LKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMS 1045
             +  ATPF   +VD+I+  L   G+   G E +Y+G TG  + + +F+GPT+YQRL HM 
Sbjct: 1070 FEGDATPFTDVTVDSISRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMV 1129

Query: 1046 EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQ 1105
            +DK+  R  GP   LTRQPV  R R GG++FGEMERDC+IAHGA+A L ERLF +SD ++
Sbjct: 1130 DDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFR 1189

Query: 1106 MHICRKCKNVANVIQRVVGGGRKVRGPY-CRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
            +HIC  C  +  V        +  +G + CR+C++   I + ++PY AKLL QEL SM I
Sbjct: 1190 VHICDDCGLMTPV-------AKLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELASMNI 1242

Query: 1165 TLKFDT 1170
              +  T
Sbjct: 1243 AARMFT 1248


>gi|409051856|gb|EKM61332.1| hypothetical protein PHACADRAFT_247866 [Phanerochaete carnosa
            HHB-10118-sp]
          Length = 1237

 Score =  639 bits (1647), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 407/1234 (32%), Positives = 642/1234 (52%), Gaps = 133/1234 (10%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYAS 85
            C     SFF++ GLV  Q++S++EF++N +Q+  D   + I++     +       R   
Sbjct: 40   CWHIISSFFDQKGLVRQQLDSFDEFVQNTMQELVDENADLILDQADQHTGHEADVTRRYE 99

Query: 86   MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
            ++FGQ+ L +P+    +G     +FP+ ARL+N+TYS+ + V+++ +    +        
Sbjct: 100  IKFGQIYLSRPTVTEADGS-VVPIFPQEARLRNLTYSAPLYVEMKKRTLVGRE--DPDST 156

Query: 146  TGREQYIQKEVLSDETT-NIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFII 198
            TG   + Q+   S E T  + IG++P+M++S  C +  + +       +C +D GGYFII
Sbjct: 157  TGDLVWEQEHDESPEDTRKVWIGKVPIMLRSTFCILNKLTQEELFDLNECPYDSGGYFII 216

Query: 199  KGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSENKR---------NRLIVRLVDMSKFE 248
             G+EKV +AQE++    ++V + +    +++ +E +          ++  V+L   ++ E
Sbjct: 217  NGSEKVLIAQERMATNHVYVFAKAQPSPISFLAEIRSAVEKGGKTISQFQVKLYHRNQ-E 275

Query: 249  DIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDAD 308
               G     ++ ++  +IPIW++F ALGV SD++I+  I +  +D  +L +L   I D  
Sbjct: 276  RSLGNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGF 335

Query: 309  NKCDEFRKGRNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSLHGTKQKARFLGY 363
               D       AL ++    +GTT            +E +   + P +H    KA F GY
Sbjct: 336  VIQDR----EIALDFIGN--RGTTTGLNRERRLRYAQEILQKEMLPHIH----KAYFFGY 385

Query: 364  MVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDR 423
            M+  LL A   RR  D+RD F  KRL+LAG LL    ++      + + + LQ+ +   +
Sbjct: 386  MIHRLLLAALERRDLDDRDHFGKKRLDLAGPLLANLFRMLFRKLTRDVYRYLQKCVETHK 445

Query: 424  TVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTR 483
                +   +  + +TNGL  + +TG W    K     +G+   L R     TL  LRR  
Sbjct: 446  EFN-LSLAVKHNTITNGLKYSLATGNWGDQKKSMSAKAGVSQVLNRYTYASTLSHLRRCN 504

Query: 484  QQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLF 542
              +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  S+  P+ E L 
Sbjct: 505  TPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMACISVGSLSAPVIEFLE 564

Query: 543  NSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
              G+E L ++A +S     KVFV+G W+GV +D  + V  +++ RR+ ++  +V + RD 
Sbjct: 565  EWGLESLEENA-HSTTPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDI 623

Query: 603  LQSEVRIFMDAGRILRPLLVVEN---------------------------MGKIKSLEGK 635
             + E+R++ DAGR+ RPL +VEN                           + +  + + +
Sbjct: 624  RERELRLYTDAGRVCRPLFIVENNQLTLRKKHIEWIASGVPQYDDAGSRLLKEDGTYDNQ 683

Query: 636  NYTFQALLDHGIIELVGTEEEED---CCTAWGIKYLL---------KDIEDKKPIK---- 679
             Y +  L+  G+IEL+  EEEE    C T   ++            +D  +  P      
Sbjct: 684  PYEWSNLVKDGVIELLDAEEEETVMICMTPEDLENARLQQAGIDSHRDESEFDPSARLKN 743

Query: 680  ------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVD 733
                  +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+D
Sbjct: 744  FSMAHLWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGIYLTNFLVRMD 802

Query: 734  TLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSL 793
            T+++ L+YPQ+PL  T   +            L   EL  GQNAIVA+  + GYNQEDS+
Sbjct: 803  TMANILYYPQKPLATTRSME-----------YLKFRELPAGQNAIVAILCYSGYNQEDSV 851

Query: 794  VMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGF 853
            +MN++S++RG+FRS + RSY  +++ K    +    +       ++ K G  D L+DDG 
Sbjct: 852  IMNQSSIDRGLFRSMYYRSY-MDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKLEDDGL 910

Query: 854  PFIGANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSND 898
               G  +   DI+IGK A                +  D S  LK TE G++ +V++++N 
Sbjct: 911  IAPGTGVNGEDIIIGKTAPIPPDSEELGQRTRTHTKRDVSTPLKSTESGIIDQVLITTNA 970

Query: 899  DGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFP 958
            +G+ F  + +R  R P +GDKF+S HGQKG +G    QE+ PFT +GI PDIVINPHA P
Sbjct: 971  EGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIVINPHAIP 1030

Query: 959  SRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERL 1018
            SR T G L+E  L K    +G       +  ATPF   +V+++++ L   G+   G E +
Sbjct: 1031 SRMTIGHLVECLLSKVATIVGN------EGDATPFTDLTVESVSQILREQGYQSRGLEIM 1084

Query: 1019 YDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGE 1078
            Y G TG  +++ ++ GPT+YQRL HM +DK+  R  GPV  LTRQPV  R R GG++FGE
Sbjct: 1085 YHGHTGRKLQAQVYFGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGE 1144

Query: 1079 MERDCLIAHGAAANLHERLFTLSDSYQMHICRKC--KNVANVIQRVVGGGRKVRGPYCRI 1136
            MERDC+I+HG AA L ERLF  SD+Y++H+C  C    +AN+ ++            CR 
Sbjct: 1145 MERDCMISHGVAAFLKERLFEASDAYRLHVCDICGLTAIANLKKQTFE---------CRS 1195

Query: 1137 CDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
            C +     +  +PY AKLL QEL SM I  +  T
Sbjct: 1196 CKNKTACSQLYIPYAAKLLFQELQSMNIAARLYT 1229


>gi|121709250|ref|XP_001272355.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus clavatus NRRL 1]
 gi|119400504|gb|EAW10929.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus clavatus NRRL 1]
          Length = 1257

 Score =  639 bits (1647), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 429/1266 (33%), Positives = 648/1266 (51%), Gaps = 142/1266 (11%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSK 75
            D+ E      C     SFF+  GLVS Q++S++EF+ + +Q+  +  G+  ++    P+ 
Sbjct: 15   DMEEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFVSSTMQELVEEQGQVTLDQTLPPAD 74

Query: 76   KGEGE--WRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQV 133
                    R   ++FG V L +PS   G+G     M P+ ARL+N+TY+S + + +  ++
Sbjct: 75   DEVDPVVLRRYELKFGTVMLSRPSVTEGDGATTI-MLPQEARLRNLTYASPLYLGITKRI 133

Query: 134  YT-QKRVTSD--------------KFKTGREQYIQKEVLSDETT--NIIIGRIPVMVKSD 176
               ++R+ +D              K +    Q+ QKE+ +D+     + IG++P+M+KS 
Sbjct: 134  MEGRERLIADREDDETVPDADEDRKARGTYLQWEQKELPADQAKEETVFIGKMPIMLKSK 193

Query: 177  LCWMKGVEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYK 229
             C +K + +       +C +D GGYFII G+EKV +AQE+     + V   +      Y 
Sbjct: 194  YCILKDLSEQALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNTVQVFKKAPPSPTPYV 253

Query: 230  SE-----NKRNRLI--VRLVDMSKFEDIKGG--EKVLSVY-FLSTEIPIWILFFALGVSS 279
            +E      K +RL+  + L   +K +  KGG    + S   ++ T+IPI ++F ALGV S
Sbjct: 254  AEIRSAVEKGSRLLSQLSLKLFAKGDSAKGGFGPTIRSTLPYVKTDIPIVVVFRALGVVS 313

Query: 280  DKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES- 338
            D++I+N I +   D  +L +L   I +     D       AL ++ K     +    E  
Sbjct: 314  DEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDR----EVALDFIAKRGSSQSSMNHERR 369

Query: 339  ---TEECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLEL 391
                 E M   L P +  ++    +KA FLGYMV  LLQ   GRR  D+RD F  KRL+L
Sbjct: 370  VRYAREIMQKELLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDL 429

Query: 392  AGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWS 451
            AG LL    +V      + + + +QR +  +R +  +   + AS LT GL  A +TG W 
Sbjct: 430  AGPLLANLFRVLFTRVTRDLQRYVQRCVETNREIY-LNIGIKASTLTGGLKYALATGNWG 488

Query: 452  HPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLST 511
               K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   T
Sbjct: 489  EQKKAASSKAGVSQVLSRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAET 548

Query: 512  PDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWI 570
            P+G+ CGLVKNL +   ++  +  EPI + +    ME L +          KVFV+G W+
Sbjct: 549  PEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWV 608

Query: 571  GVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-- 628
            GV +D    V+ +   RRR  +  +V + RD  + E +IF DAGR+ RPL V++N  K  
Sbjct: 609  GVHRDPAHLVNTMLSLRRRNMISHEVSLIRDIREREFKIFTDAGRVCRPLFVIDNDPKSE 668

Query: 629  -----------IKSLEG---------------KNYTFQALLDHGIIELVGTEEEEDCCTA 662
                       I+ LE                + + +  L+  G++E V  EEEE    +
Sbjct: 669  NCGSLVLNKEHIRKLEQDKELPPDLDPEERRERYFGWDGLVKSGVVEYVDAEEEEHIMIS 728

Query: 663  WGIK-----------YLLKDIEDKKPIK------------FTHCELDMSFLLGLSCGIIP 699
               +           Y L + E   P K            +THCE+  S +LG+   IIP
Sbjct: 729  MTPEDLEISKQLQAGYALPEEELNDPNKRVRSILSQRAHTWTHCEIHPSMILGVCASIIP 788

Query: 700  FANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPG 759
            F +H+ + R  YQS     QA+G   TN   R++T+++ L+YPQ+PL  T   +      
Sbjct: 789  FPDHNQSPRNTYQS-AMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSME------ 841

Query: 760  YGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDN 819
                  L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y      
Sbjct: 842  -----FLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSMFYRTYTDTEKM 896

Query: 820  KEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD------- 872
              + V  R    M +   I  + G  D LD+DG    G  +   DI+IGK A        
Sbjct: 897  VGLTVVERFEKPMRS-DTIGMRKGTYDKLDEDGIIAPGVRVSGEDIIIGKTAPLAPEAEE 955

Query: 873  --------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMH 924
                    +  D S  L+ TE G+V +V++S+++D   F  V +R  + P +GDKF+S H
Sbjct: 956  LGQRTKAHTKLDVSTPLRSTENGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRH 1015

Query: 925  GQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICS 984
            GQKG +G    QE+ PFT +G+VPD++INPHA PSR T   L+E  L K +++L      
Sbjct: 1016 GQKGTIGITYRQEDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLSK-VSSL-----R 1069

Query: 985  GLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHM 1044
            G +  ATPF   +VD+++  L   G+   G E +Y+G TG  + + +F+GPT+YQRL HM
Sbjct: 1070 GFEGDATPFTDVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKMVAQVFLGPTYYQRLRHM 1129

Query: 1045 SEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSY 1104
             +DK+  R  GP   LTRQPV  R R GG++FGEMERDC+IAHGA+A L ERLF +SD +
Sbjct: 1130 VDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPF 1189

Query: 1105 QMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
            ++HIC  C  +   I ++  G  +     CR+C++   I + ++PY AKLL QEL +M I
Sbjct: 1190 RVHICDDC-GLMTPIAKLKKGLFE-----CRLCNNKHRISQVHIPYAAKLLFQELAAMNI 1243

Query: 1165 TLKFDT 1170
              +  T
Sbjct: 1244 AARMFT 1249


>gi|225680527|gb|EEH18811.1| DNA-directed RNA polymerase II subunit RPB2 [Paracoccidioides
            brasiliensis Pb03]
 gi|226292836|gb|EEH48256.1| DNA-directed RNA polymerase II subunit RPB2 [Paracoccidioides
            brasiliensis Pb18]
          Length = 1258

 Score =  639 bits (1647), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 434/1269 (34%), Positives = 640/1269 (50%), Gaps = 143/1269 (11%)

Query: 15   CDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPS 74
            C+  E      C     SFF   GLVS Q++S++EFI   +Q+  +  G+  ++    PS
Sbjct: 14   CEQEEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPS 73

Query: 75   KKGEGE--WRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQ 132
            +        R   ++FG V L +PS   G+G     M P+ ARL+N+TY+S + + +  +
Sbjct: 74   EDEVDPVVLRRYELKFGTVMLARPSMTEGDGATSI-MLPQEARLRNLTYASPLYLGITKR 132

Query: 133  VYT-QKRVTSDK------------FKTGREQYIQKE--VLSD---ETTNIIIGRIPVMVK 174
            V   ++R+ S++             +  R  Y+  E   L++   E  N+ IGR+P+M+K
Sbjct: 133  VTEGRERLISERDDADQDEQDNDEDRRNRGTYLHWEPKALNEDEPEEENVFIGRMPIMLK 192

Query: 175  SDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMG 223
            S  C +K + +       +C +D GGYFII G+EKV +AQE+     + V      +   
Sbjct: 193  SKYCILKDLNEQALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTP 252

Query: 224  WTVAYKSENKRNRLIVRLVDMSKF---EDIKGG--EKVLSVY-FLSTEIPIWILFFALGV 277
            +    +S  ++   I+  + +  F   +  KGG    + S   ++ T+IPI ++F ALGV
Sbjct: 253  YVAEIRSAVEKGSRILSQLSIKLFAKGDTSKGGFGPTIRSTLPYIKTDIPIVVVFRALGV 312

Query: 278  SSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGE 337
             SD++I+N I +   D  +L +L   I +     D       AL ++ K     T    E
Sbjct: 313  VSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDR----EVALDFISKRGSSPTSMNHE 368

Query: 338  S----TEECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRL 389
                   + +     P +  ++    +KA FLGYMV  LLQ   GRR  D+RD F  KRL
Sbjct: 369  KRVRYARDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRL 428

Query: 390  ELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGA 449
            +LAG LL    ++      K + K +QR +  +R +  +   + AS L+ GL  A +TG 
Sbjct: 429  DLAGPLLANLFRILFMRVTKDLYKYVQRCVETNRQLY-LNIGVKASTLSGGLKYALATGN 487

Query: 450  WSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFL 509
            W    K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C  
Sbjct: 488  WGEQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPA 547

Query: 510  STPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGD 568
             TP+G+ CGLVKNL +   ++  +  EPI + +    ME L +          KVFV+G 
Sbjct: 548  ETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNATKVFVNGV 607

Query: 569  WIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK 628
            W+GV +D    VS ++  RRR  +  +V + RD    E +IF DAGR+ RPL VVEN  K
Sbjct: 608  WVGVHRDPSHLVSTVQSLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVVENDPK 667

Query: 629  -------------IKSLEG---------------KNYTFQALLDHGIIELVGTEEEEDCC 660
                         I  LE                + + +  L+  G++E V  EEEE   
Sbjct: 668  SENCGSLVLSKEHIHKLEADKEIPADLDPEERRERYFGWDGLVKSGVVEYVDAEEEETIM 727

Query: 661  TAW-------------GIKYLLKDIEDK----------KPIKFTHCELDMSFLLGLSCGI 697
                            G     +D  D+          K   +THCE+  S +LG+   I
Sbjct: 728  IVMTPEDLEMSKQVQAGYNLPEEDHTDRNRRVRSNLSQKAHTWTHCEIHPSMILGICASI 787

Query: 698  IPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGK 757
            IPF +H+ + R  YQS     QA+G   TN   R++T+++ L+YPQ+PL  T   +    
Sbjct: 788  IPFPDHNQSPRNTYQS-AMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSME---- 842

Query: 758  PGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEV 817
                    L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y    
Sbjct: 843  -------FLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSE 895

Query: 818  DNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA------ 871
                M V  R    M +   ++ K G  D +DDDG    G  +   DI+IGK A      
Sbjct: 896  KMVGMTVVERFEKPMRS-DTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPDA 954

Query: 872  ---------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSS 922
                      +  D S  L+ TE G+V +V++S+++D   F  V  R  + P +GDKF+S
Sbjct: 955  EELGQRTKQHTKVDVSTPLRSTESGIVDQVLISTSNDDLKFVKVRTRTTKIPQIGDKFAS 1014

Query: 923  MHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGI 982
             HGQKG +G    QE+ PFT +GI PDI+INPHA PSR T   L+E  L K +++L    
Sbjct: 1015 RHGQKGTIGITYRQEDMPFTREGITPDIIINPHAIPSRMTIAHLIECQLSK-VSSL---- 1069

Query: 983  CSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLI 1042
              G +  ATPF   +VD+I+  L   G+   G E +Y+G TG  + + IF+GPT+YQRL 
Sbjct: 1070 -RGFEGDATPFTDVTVDSISGLLREHGYQSRGFEVMYNGHTGRKLVAQIFLGPTYYQRLR 1128

Query: 1043 HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSD 1102
            HM +DK+  R  GP   LTRQPV  R R GG++FGEMERDC+IAHGA+A L ERLF +SD
Sbjct: 1129 HMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSD 1188

Query: 1103 SYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSM 1162
             +++HIC  C  +   I ++  G  +     CR C + + I + ++PY AKLL QEL SM
Sbjct: 1189 PFRVHICDIC-GLMTPIAKLKKGDFE-----CRACKNKNKISQVHIPYAAKLLFQELMSM 1242

Query: 1163 GITLKFDTE 1171
             I  +  T+
Sbjct: 1243 NIAARMFTK 1251


>gi|295661506|ref|XP_002791308.1| DNA-directed RNA polymerase II subunit RPB2 [Paracoccidioides sp.
            'lutzii' Pb01]
 gi|226280870|gb|EEH36436.1| DNA-directed RNA polymerase II subunit RPB2 [Paracoccidioides sp.
            'lutzii' Pb01]
          Length = 1258

 Score =  639 bits (1647), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 434/1273 (34%), Positives = 642/1273 (50%), Gaps = 151/1273 (11%)

Query: 15   CDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPS 74
            C+  E      C     SFF   GLVS Q++S++EFI   +Q+  +  G+  ++    PS
Sbjct: 14   CEQEEGITSEDCWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPS 73

Query: 75   KKGEGE--WRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQ 132
            +        R   ++FG V L +PS   G+G     M P+ ARL+N+TY+S + + +  +
Sbjct: 74   EDEVDPVVLRRYELKFGTVMLARPSMTEGDGATSI-MLPQEARLRNLTYASPLYLGITKR 132

Query: 133  VYT-QKRVTSDK------------FKTGREQYIQKE--VLSD---ETTNIIIGRIPVMVK 174
            V   ++R+ S++             +  R  Y+  E   L++   E  N+ IGR+P+M+K
Sbjct: 133  VTEGRERLISERDDADQDEQDNDEDRRNRGTYLHWEPKALNEDEPEEENVFIGRMPIMLK 192

Query: 175  SDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMG 223
            S  C +K + +       +C +D GGYFII G+EKV +AQE+     + V      +   
Sbjct: 193  SKYCILKDLNEQALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTP 252

Query: 224  WTVAYKSENKRNRLIVRLVDMSKF---EDIKGG--EKVLSVY-FLSTEIPIWILFFALGV 277
            +    +S  ++   I+  + +  F   +  KGG    + S   ++ T+IPI ++F ALGV
Sbjct: 253  YVAEIRSAVEKGSRILSQLSIKLFAKGDTSKGGFGPTIRSTLPYIKTDIPIVVVFRALGV 312

Query: 278  SSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGE 337
             SD++I+N I +   D  +L +L   I +     D       AL ++ K     T    E
Sbjct: 313  VSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDR----EVALDFISKRGSSPTSMNHE 368

Query: 338  S----TEECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRL 389
                   + +     P +  ++    +KA FLGYMV  LLQ   GRR  D+RD F  KRL
Sbjct: 369  KRVRYARDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRL 428

Query: 390  ELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGA 449
            +LAG LL    ++      K + K +QR +  +R +  +   + AS L+ GL  A +TG 
Sbjct: 429  DLAGPLLANLFRILFMRVTKDLYKYVQRCVETNRQLY-LNIGVKASTLSGGLKYALATGN 487

Query: 450  WSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFL 509
            W    K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C  
Sbjct: 488  WGEQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPA 547

Query: 510  STPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGD 568
             TP+G+ CGLVKNL +   ++  +  EPI + +    ME L +          KVFV+G 
Sbjct: 548  ETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNATKVFVNGV 607

Query: 569  WIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK 628
            W+GV +D    VS ++  RRR  +  +V + RD    E +IF DAGR+ RPL VVEN  K
Sbjct: 608  WVGVHRDPSHLVSTVQSLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVVENDPK 667

Query: 629  -------------IKSLEG---------------KNYTFQALLDHGIIELVGTEEEEDCC 660
                         I  LE                + + +  L+  G++E V  EEEE   
Sbjct: 668  SENCGSLVLSKEHIHKLEADKEIPADLDPEERRERYFGWDGLVKSGVVEYVDAEEEETIM 727

Query: 661  TAWGIKYLLKDIEDKKPIK---------------------------FTHCELDMSFLLGL 693
                I    +D+E  K ++                           +THCE+  S +LG+
Sbjct: 728  ----IVMTPEDLEMSKQVQAGYNLPEEDHTDRNRRVRSNLSQKTHTWTHCEIHPSMILGI 783

Query: 694  SCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISD 753
               IIPF +H+ + R  YQS     QA+G   TN   R++T+++ L+YPQ+PL  T   +
Sbjct: 784  CASIIPFPDHNQSPRNTYQS-AMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSME 842

Query: 754  CLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSY 813
                        L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y
Sbjct: 843  -----------FLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTY 891

Query: 814  KAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA-- 871
                    M V  R    M +   ++ K G  D +DDDG    G  +   DI+IGK A  
Sbjct: 892  TDSEKMVGMTVVERFEKPMRS-DTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPL 950

Query: 872  -------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGD 918
                          +  D S  L+ TE G+V +V++S+++D   F  V  R  + P +GD
Sbjct: 951  APDAEELGQRTKQHTKVDVSTPLRSTESGIVDQVLISTSNDDLKFVKVRTRTTKIPQIGD 1010

Query: 919  KFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAL 978
            KF+S HGQKG +G    QE+ PFT +GI PDI+INPHA PSR T   L+E  L K +++L
Sbjct: 1011 KFASRHGQKGTIGITYRQEDMPFTREGITPDIIINPHAIPSRMTIAHLIECQLSK-VSSL 1069

Query: 979  GKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFY 1038
                  G +  ATPF   +VD+I+  L   G+   G E +Y+G TG  + + IF+GPT+Y
Sbjct: 1070 -----RGFEGDATPFTDVTVDSISGLLREHGYQSRGFEVMYNGHTGRKLVAQIFLGPTYY 1124

Query: 1039 QRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLF 1098
            QRL HM +DK+  R  GP   LTRQPV  R R GG++FGEMERDC+IAHGA+A L ERLF
Sbjct: 1125 QRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLF 1184

Query: 1099 TLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQE 1158
             +SD +++HIC  C  +   I ++  G  +     CR C + + I + ++PY AKLL QE
Sbjct: 1185 DVSDPFRVHICDIC-GLMTPIAKLKKGDFE-----CRACKNKNKISQVHIPYAAKLLFQE 1238

Query: 1159 LFSMGITLKFDTE 1171
            L SM I  +  T+
Sbjct: 1239 LMSMNIAARMFTK 1251


>gi|410079905|ref|XP_003957533.1| hypothetical protein KAFR_0E02450 [Kazachstania africana CBS 2517]
 gi|372464119|emb|CCF58398.1| hypothetical protein KAFR_0E02450 [Kazachstania africana CBS 2517]
          Length = 1222

 Score =  639 bits (1647), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 424/1222 (34%), Positives = 633/1222 (51%), Gaps = 118/1222 (9%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            SFF E GLVS Q++S+N+F+   LQ         I+E     + + +   R   + FG++
Sbjct: 32   SFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHTTEADNISRKYEISFGKI 91

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             + KP     +G   H ++P+ ARL+N+TYSS + V V+ + Y    V     K    + 
Sbjct: 92   YVTKPMVNESDGV-THALYPQEARLRNLTYSSGLFVDVRKRTYEAVDVPGRDLKY---EL 147

Query: 152  IQKEVLSD-ETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGAEKV 204
            I +E   D E+  + IGR+P+M++S  C++    + D      C FD GGYFII G+EKV
Sbjct: 148  IAEESEDDSESGKVFIGRLPIMLRSKNCYLSDATESDLYKLKECPFDMGGYFIINGSEKV 207

Query: 205  FVAQEQICLKRLWVSNSMGWT-VAYKSE-----NKRNRLIVRL-VDMSKFEDIKGGEKVL 257
             +AQE+     + V      + +++ +E      K +R I  L V +   E         
Sbjct: 208  LIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGRESSSSRTIKA 267

Query: 258  SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG 317
            ++ ++  +IPI I+F ALG+  D EI+  I +   D  +L +L   + D     D     
Sbjct: 268  TLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFVIQDR---- 323

Query: 318  RNALKYVDKLIKGTTFPPGES-----TEECMNTYLFP---SLHG-TKQKARFLGYMVKCL 368
              AL ++ +  +GT     +       ++ +     P    L G   +KA FLGYM+  L
Sbjct: 324  ETALDFIGR--RGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRL 381

Query: 369  LQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPI 428
            L     R+  D+RD F  KRL+LAG LL +  K       K + + +QR +        +
Sbjct: 382  LLCALDRKDQDDRDHFGKKRLDLAGPLLGQLFKTLFRKLTKDIFRYMQRTVEEANDFN-M 440

Query: 429  EYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQY 488
            +  ++A  +T+GL  A +TG W    K     +G+   L R     TL  LRRT   +  
Sbjct: 441  KLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGR 500

Query: 489  TGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-LEPIFEQLFNSGME 547
             GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S      PI   L   GME
Sbjct: 501  DGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEWGME 560

Query: 548  KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEV 607
             L D   +      +VFV+G W GV ++    +  LR  RR+ ++  +V + RD  + E+
Sbjct: 561  PLEDYIPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIRDIREKEL 620

Query: 608  RIFMDAGRILRPLLVVEN------------MGKIKSL-------------EGKNYTFQAL 642
            +IF DAGR+ RPL +VE+             G I  L             + + YT+ +L
Sbjct: 621  KIFTDAGRVYRPLFIVEDDEALGHKELKVRKGHINKLMATEYQDIEGGFEDSEEYTWTSL 680

Query: 643  LDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKK--------PIK----------FTHCE 684
            L+ G++E +  EEEE    A   + L    E+++        P K          FTHCE
Sbjct: 681  LNEGLVEYIDAEEEETILIAMQPEDLEPMGEEEETQNDTAMDPAKRIKATQNATTFTHCE 740

Query: 685  LDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQR 744
            +  S +LG++  IIPF +H+ + R  YQS     QA+G   TN ++R+DT+++ L+YPQ+
Sbjct: 741  IHPSMILGVAASIIPFPDHNQSPRNTYQS-AMGKQAMGVFLTNFNVRMDTMANILYYPQK 799

Query: 745  PLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGM 804
            PL  T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+
Sbjct: 800  PLGTTRAME-----------YLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGL 848

Query: 805  FRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGD 864
            FRS   RSY  +     M +   + +       ++ K G  D LDDDG    G  +   D
Sbjct: 849  FRSLFFRSYMDQEKKYGMSITE-TFEKPHRTNTLRMKHGTYDKLDDDGLIAPGVRVSGED 907

Query: 865  IVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLR 909
            I+IGK                  S  D S  L+ TE G+V +V++++N DG  F  V +R
Sbjct: 908  IIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQDGLKFVKVRVR 967

Query: 910  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEA 969
              + P +GDKF+S HGQKG +G    +E+ PFT  GIVPD++INPHA PSR T   L+E 
Sbjct: 968  TTKVPQIGDKFASRHGQKGTIGITYRREDMPFTADGIVPDLIINPHAIPSRMTVAHLIEC 1027

Query: 970  ALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRS 1029
             L K +AAL     SG +  A+PF   +V+ I++ L   G+   G E +Y+G TG+ + +
Sbjct: 1028 LLSK-VAAL-----SGNEGDASPFTDITVEGISKLLREHGYHSRGFEVMYNGHTGKKLMA 1081

Query: 1030 LIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA 1089
             IF GPT+YQRL HM +DK+  R  GP+  LTRQPV  R R GG++FGEMERDC+IAHGA
Sbjct: 1082 QIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGA 1141

Query: 1090 AANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVP 1149
            AA L ERL   SD++++HIC  C  + +VI ++     +     C+ C++  DI + ++P
Sbjct: 1142 AAFLKERLMEASDAFRVHICGNC-GLMSVIAKLSHNQFE-----CKGCNNKIDIYQIHIP 1195

Query: 1150 YGAKLLCQELFSMGITLKFDTE 1171
            Y AKLL QEL +M IT +  T+
Sbjct: 1196 YAAKLLFQELMAMNITPRLFTD 1217


>gi|401827615|ref|XP_003888100.1| DNA-directed RNA polymerase subunit B [Encephalitozoon hellem ATCC
            50504]
 gi|392999300|gb|AFM99119.1| DNA-directed RNA polymerase subunit B [Encephalitozoon hellem ATCC
            50504]
          Length = 1141

 Score =  638 bits (1646), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 426/1213 (35%), Positives = 629/1213 (51%), Gaps = 139/1213 (11%)

Query: 21   FLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGE 80
            F K        SFF + GLV  Q++S+++F+K  +Q+  D     IV+    P+   E +
Sbjct: 5    FTKEHSWSIISSFFEQKGLVRQQLDSFDQFVKTKMQEVIDESPAIIVQSA--PTAGTETQ 62

Query: 81   WRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVT 140
             R  ++RFGQ+ + KP  +  + G    +FP  AR +++TY+S + + V  +  ++  V 
Sbjct: 63   KR-ITVRFGQIYVSKPPIYTESDGRTITVFPNEARTRDLTYASPLFIDVIKETVSELGVV 121

Query: 141  SDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGG 194
             DK K  R               +  G +PVM++S  C + G      ++ G+C +D GG
Sbjct: 122  -DKHKYSR---------------VPFGSLPVMLRSSYCVLHGLGDKDLIDLGECPYDQGG 165

Query: 195  YFIIKGAEKVFVAQEQICLKRLWV---SNSMGWT-------VAYKSENKRNRLIVRLVDM 244
            YFI+ G+EKV VAQE++    ++V   +    +T       V  KS    + L ++L   
Sbjct: 166  YFIVNGSEKVIVAQERMASNTVYVFKKAQPATYTHYAEIRSVPEKSSRNPSTLSMKLCRS 225

Query: 245  SKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASI 304
                 +       S+  +  ++P+++L+ ALG  SDKEI++ I +  +D  +  +L  SI
Sbjct: 226  PVAIRV-------SLPLVKQDVPLFVLYRALGFLSDKEIIDHILYEDDD-EMFELLKESI 277

Query: 305  HDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLHGTKQ- 356
             +     D+      AL Y+ K     T P G   E       + +   + P + GT++ 
Sbjct: 278  EEGMVVQDQ----NVALDYIGK----RTAPVGTPQEKRIMMAKDLLAKEVLPHI-GTQEF 328

Query: 357  ----KARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMA 412
                KA F+GY+V+ LL    GRR  D+RD +  KR++L+G LL    +           
Sbjct: 329  CETKKAYFIGYIVQRLLLVALGRRNPDDRDHYGKKRMDLSGPLLASLFRTLFKKLCADTT 388

Query: 413  KALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANP 472
            + +Q+ +   R    I   L ASI+T G   A +TG W    K  +  +G+   L R N 
Sbjct: 389  RHMQKCIENGREFN-IALGLKASIITQGFRYALATGNWGDQAKAMQTRAGVAQVLNRYNF 447

Query: 473  LQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST- 531
            + TL  LRR    ++  GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  
Sbjct: 448  VSTLSHLRRVNTPIEKEGKLAAPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMAYISVG 507

Query: 532  SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKE 591
            S   P+ E L   G+E L + +++ L    KVFV+G WIG+  D +  V  L+  RR  E
Sbjct: 508  SSSGPLIEFLEECGVESLEEISNFQLNTATKVFVNGVWIGIHSDPVYLVKSLKLLRRSLE 567

Query: 592  LPTQVEIKRDELQSEVRIFMDAGRILRPLLVV---------ENMGKIKSLEGKNYTFQAL 642
            +  +V I RD  + E+RI  DAGR  RPL+VV         E++G+++  E K   +  L
Sbjct: 568  MDKEVSIVRDIREKEIRIQSDAGRPCRPLMVVKDNKLVITEEDIGRLRRGEIK---WDNL 624

Query: 643  LDHGIIELVGTEEEEDCCTAWGIKYL---LKDIEDKKPIKFTHCELDMSFLLGLSCGIIP 699
            +  G IE +  EEEE    A   K L    K   D K I +THCE+  + +LG+    IP
Sbjct: 625  IGEGFIEFLDVEEEEMSMIAMSTKVLDDERKSSSDVK-ISYTHCEIHPALILGICASTIP 683

Query: 700  FANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPG 759
            F +H+ + R  YQS     QA+G   TN  +R+DTLS+ LFYPQ+PL  T          
Sbjct: 684  FPDHNQSPRNTYQS-AMGKQAMGIYATNFLLRMDTLSNILFYPQKPLVTT---------- 732

Query: 760  YGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAE--- 816
                  L   EL +GQNA+VA+  + GYNQEDS++MN+++++RG+FRS   R+Y  +   
Sbjct: 733  -KSMEYLRFKELPSGQNALVAIACYSGYNQEDSVIMNQSAIDRGLFRSFFYRTYTDQESM 791

Query: 817  ----VDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD 872
                V+ +  +  R S   M N           + LDDDG    G  +   D++IGK   
Sbjct: 792  SRPGVNEEFCKPNRGSVLRMKNLN--------YNKLDDDGLINPGTRVTGDDVLIGKITP 843

Query: 873  --------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGD 918
                             D S  ++ TE G+V  V+++ N DG  FS V +R  R P +GD
Sbjct: 844  ILDPERSTKETPVYVYKDSSTAMRRTETGIVDTVIVT-NKDGYKFSKVKVRSGRIPQMGD 902

Query: 919  KFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAL 978
            KF+S H QKG +G    QE+ PFT  GIVPDI+INPHA PSR T G L+E  LGK ++A+
Sbjct: 903  KFASRHAQKGTIGITLRQEDMPFTSDGIVPDIIINPHAIPSRMTIGHLIECLLGK-VSAM 961

Query: 979  GKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFY 1038
                 SG +  ATPF+  SV+ I+ +L   GF + G E +Y+G TG  +R+ IF GPT+Y
Sbjct: 962  -----SGEEGDATPFSGMSVNEISARLKSYGFQQRGLEVMYNGMTGRKLRAQIFFGPTYY 1016

Query: 1039 QRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLF 1098
            QRL HM +DK+  R  GP+  LTRQPV  R R GG++FGEMERDC+I+HGA+A L ERL 
Sbjct: 1017 QRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEMERDCIISHGASAFLKERLM 1076

Query: 1099 TLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQE 1158
             +SD+Y  ++C  C  +A        GG KV    C+ C +  ++    +PY  KLL QE
Sbjct: 1077 DVSDAYSCYVCNICGLLAM-------GGSKVNE--CKGCSNTTNVSIVEIPYAFKLLIQE 1127

Query: 1159 LFSMGITLKFDTE 1171
            L  M I  +   E
Sbjct: 1128 LMGMNIAPRIRFE 1140


>gi|325186944|emb|CCA21488.1| PREDICTED: hypothetical protein [Albugo laibachii Nc14]
          Length = 1234

 Score =  638 bits (1646), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 418/1231 (33%), Positives = 633/1231 (51%), Gaps = 109/1231 (8%)

Query: 2    DSDDNGFTDP-TSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFD 60
            D+ D+  + P T+   LG    +        S+F E GLV  Q++S++EFI+N +Q+  D
Sbjct: 35   DTQDDPHSIPSTTQGILGSSVSQEDAWAVISSYFEEKGLVRQQLDSFDEFIQNTMQELVD 94

Query: 61   SFGETIVEP--GYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQN 118
                  + P   Y P +          ++FGQ+ L KP+    +G     MFP  ARL+N
Sbjct: 95   DSRHIRINPEAQYTPGQAKAATDTIYVIQFGQIYLSKPTMTEADGSTS-VMFPHEARLRN 153

Query: 119  MTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLC 178
            +TYS+ + V V  Q +        K +   E Y Q E     T    IG +P+M++S  C
Sbjct: 154  LTYSAPLYVDVVCQKFQANATGPTKIEE-MEPYDQVE-----TPKEFIGMVPIMLRSQYC 207

Query: 179  WMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQI------CLKRLWVSNSMGWTV 226
             +         E  +C +D GGYF+I G+EKV +AQE++      C ++  VS    W  
Sbjct: 208  VLTHKTDKELTELNECVYDQGGYFLINGSEKVLIAQERMSNNHVYCFRKSGVSK-YSWVC 266

Query: 227  AYKSENKR-----NRLIVRLVDMSKFEDIKGGEKVLSVY-FLSTEIPIWILFFALGVSSD 280
              +S  +      + + V++   S  +    G ++ +V  ++  +IP+ I+F ALG  +D
Sbjct: 267  ETRSHVEHGVRPTSTMYVQMYQRSGGKSAISGNQIRAVIPYIRQDIPVVIIFRALGFVAD 326

Query: 281  KEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES-- 338
            +EI+  I +   D  ++     S+ +A       ++   AL ++ +  +G+    G++  
Sbjct: 327  REILEHICYDFTDVELMERFKPSLEEAF----VIQEQEVALDFIGR--RGSAINVGKADR 380

Query: 339  ---TEECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLEL 391
                ++ +   + P +    H   +KA FLGY+V  LL    GR   D+RD + NKRL+L
Sbjct: 381  IRYAQDILQKEMLPHVGVEDHNETKKAYFLGYVVHKLLMCSLGRIGEDDRDHYGNKRLDL 440

Query: 392  AGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWS 451
            AG LL    ++      K +   LQ+ +   +    +   + +  +TNGL  + +TG W 
Sbjct: 441  AGPLLGSLFRILFKKLTKDVKTYLQKCVDNGKDFN-LTLAIRSRTITNGLRYSLATGNWG 499

Query: 452  HPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLST 511
               ++T   +G+   L R     +L  LRR    +   GK    R  H +HWG IC   T
Sbjct: 500  --MQKTASKAGVSQVLNRLTYASSLSHLRRLNTPLGREGKQAQPRQLHNTHWGMICPAET 557

Query: 512  PDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWI 570
            P+G+  GLVKNL +   +S  S   PI E L     E L +     +    K+FV+G+W+
Sbjct: 558  PEGQAVGLVKNLALMAYISVGSPQAPILEFLEEWATENLEEIKPQIIPHSTKIFVNGNWV 617

Query: 571  GVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE------ 624
            GV ++    V  LR  RR  ++  +V + RD +  E+RI+ DAGR+ RPL +VE      
Sbjct: 618  GVHREPNELVRTLRSLRRCVDIDAEVSVIRDLMNRELRIYTDAGRVCRPLFIVEENQLLL 677

Query: 625  ---NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFT 681
                + K+++ +  NY +  LL  G++EL+ TEEEE C  A   K +    +     ++T
Sbjct: 678  QKEQVVKLQNHKITNYRWHNLLTDGVVELIDTEEEEVCMIAMEPKDVGLGTQ-----QYT 732

Query: 682  HCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFY 741
            HCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   +N   R+DT+++ L Y
Sbjct: 733  HCEIHPSMILGICASIIPFPDHNQSPRNTYQSAM-GKQAMGVYCSNFRARMDTMANVLNY 791

Query: 742  PQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLE 801
            PQ+PL  T   + L      H   LP     +G NAIV +  + GYNQEDSL+MN+++++
Sbjct: 792  PQKPLVTTRAMEFL------HFRELP-----SGINAIVGIASYTGYNQEDSLIMNQSAID 840

Query: 802  RGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQS---------KIGRVDSLDDDG 852
            RG+FRS   R Y  +  NK       ++  + N  + +          + G    LD DG
Sbjct: 841  RGLFRSTFYRCYVDQERNKSPHGGSAATALVSNCEEFEKPSRDNCLGLRHGSYHKLDADG 900

Query: 853  FPFIGANLQSGDIVIGKYA------DSGA-------DHSIKLKHTERGMVQKVVLSSNDD 899
                G  +   DI+IGK +      DS         D S  L+  E G++  V+L++N D
Sbjct: 901  LVAPGTRVSGNDIIIGKTSPLPVSEDSSLEQRHQKRDASTSLRSHENGIIDSVMLTTNAD 960

Query: 900  GKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPS 959
            G  F+ V  R +R P +GDKF+S HGQKG +G    QE+ PFT++GI PDI++NPHA PS
Sbjct: 961  GFKFTKVRFRNIRIPQIGDKFASRHGQKGTIGMTYRQEDMPFTLEGITPDIIVNPHAIPS 1020

Query: 960  RQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLY 1019
            R T G L+E  LGK  +  G       +  ATPF   +V AI + LH  G+ + G E LY
Sbjct: 1021 RMTVGHLIECLLGKVSSQTGD------EGDATPFTDVTVQAIADTLHNLGYQRHGNEVLY 1074

Query: 1020 DGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEM 1079
             G TG  + + IFIGPTFYQRL HM +DK+  R+ GPV  LTRQP+  R R GG++ GEM
Sbjct: 1075 SGHTGRPLTAQIFIGPTFYQRLKHMVDDKIHSRSRGPVTMLTRQPMEGRAREGGLRMGEM 1134

Query: 1080 ERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDS 1139
            ERDCLI+HG+A  L +RLF  SD+Y++H+C  C  +A      +   RK+    CR C +
Sbjct: 1135 ERDCLISHGSANFLMDRLFANSDAYRVHVCDICGIIA------IANLRKMTFE-CRNCRN 1187

Query: 1140 GDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
               I + ++PY  KLL QEL SM I  +  T
Sbjct: 1188 KTQISQLHIPYSCKLLFQELMSMSIAPRLFT 1218


>gi|156065749|ref|XP_001598796.1| hypothetical protein SS1G_00885 [Sclerotinia sclerotiorum 1980]
 gi|154691744|gb|EDN91482.1| hypothetical protein SS1G_00885 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1267

 Score =  638 bits (1645), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 432/1285 (33%), Positives = 652/1285 (50%), Gaps = 165/1285 (12%)

Query: 16   DLGEE---FLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYD 72
            D GEE        C     SFF+  GLVS QI+S++EF++  +Q+  +   +  ++    
Sbjct: 12   DFGEEDAGITAEDCWTVISSFFDAKGLVSQQIDSFDEFVQTTMQELVEENSQLTLDQNNP 71

Query: 73   PSKKGEG-EWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKV-- 129
            PS        R   ++FG + L +P+   G+G  +  M P+ ARL+N+TYSS + +++  
Sbjct: 72   PSSNDNPIALRRYEIKFGTIMLSRPAMTEGDGSTQV-MLPQEARLRNLTYSSPLYIEMTK 130

Query: 130  QFQVYTQKRVTSDKFKTGRE-------QYIQKEVLSDETTN------------IIIGRIP 170
              QV  ++ V  ++    +E       ++  + V   E  +            + +G++P
Sbjct: 131  STQVAVERPVPLNELDDEQEADLANGGEHPTRLVWEYEDGDPDGAKGGPAPERVYVGKLP 190

Query: 171  VMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMG 223
            +M+KS+ C++K  ++ D      C +D GGYFII G+EKV +AQE+     + V      
Sbjct: 191  MMLKSEYCFLKNCDEDDLYGWNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKPAN 250

Query: 224  WTVAYKSE-----NKRNRLI----VRLVDMSKFEDIKGGEKVLSVY-FLSTEIPIWILFF 273
              V+Y +E      K +RLI    ++L D         G+ V S   ++  +IPI I+F 
Sbjct: 251  QAVSYLAEIRSALEKGSRLISSLQIKLYDKGDSGRGGFGKTVKSTLPYIKQDIPIAIVFR 310

Query: 274  ALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTF 333
            ALGV SD++I+N I +   D  +L +L   I +A    D       AL ++ K   GT+ 
Sbjct: 311  ALGVVSDEDILNHICYDRNDTQMLEMLKPCIEEAFVIQDR----EVALDFIGKRGNGTSL 366

Query: 334  PPGESTE---ECMNTYLFPSLH----GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRN 386
               +  +   + M   L P +        +KA FLGYMV  LLQ   GRR+ D+RD F  
Sbjct: 367  TRDKRIKYARDIMQKELLPHISQKEGSETRKAFFLGYMVHKLLQCALGRRETDDRDHFGK 426

Query: 387  KRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFS 446
            KRL+LAG LL +  +         + + LQR +  +R    +   + ++ +TNGL  + +
Sbjct: 427  KRLDLAGPLLAKLFRNLFRRLTTDVYRYLQRCVENNREFN-LTLGVKSTTITNGLKYSLA 485

Query: 447  TGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKI 506
            TG W    K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +
Sbjct: 486  TGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLV 545

Query: 507  CFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFV 565
            C   TP+G+ CGLVKNL +   V+  +  +PI E +    ME L +          KVFV
Sbjct: 546  CPAETPEGQACGLVKNLALMCYVTVGTPSDPIVEFMIQRNMEVLEEYEPLRAPNATKVFV 605

Query: 566  DGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN 625
            +G W+GV +D    V  ++  RR   +  +V + R+    E +IF DAGR+ RPLLV++N
Sbjct: 606  NGVWVGVHRDPAHLVKCVQDLRRSHLISHEVSLIREIRDREFKIFTDAGRVCRPLLVIDN 665

Query: 626  -----------------------------MGKIKSLEGKNYTFQALLDHGIIELVGTEEE 656
                                         M K + +    Y FQ L++ G++E +  EEE
Sbjct: 666  DPDSPNKGNLVLNKDHIRRLEDDQSLPSNMDKDEKVHHGYYGFQGLINDGVVEYLDAEEE 725

Query: 657  EDCCTAW-------------GIKYLLKDIED-----KKPIK-----FTHCELDMSFLLGL 693
            E                   G +    D  D     K PI      +THCE+  S +LG+
Sbjct: 726  ETVMITMTPEDLDISRQLQAGYQIRPDDSGDLNKRVKAPINPTAHVWTHCEIHPSMILGI 785

Query: 694  SCGIIPFANHDHARRVLYQSQKH------SSQAIGFPTTNPSIRVDTLSHQLFYPQRPLF 747
               IIPF +H+ A  V  +S ++        QA+G   TN  +R+DT+++ L+YPQ+PL 
Sbjct: 786  CASIIPFPDHNQANSVATKSPRNCYQSAMGKQAMGVFLTNFDVRMDTMANILYYPQKPLA 845

Query: 748  RTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRS 807
             T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS
Sbjct: 846  TTRSME-----------FLKFRELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRS 894

Query: 808  EHIRSYKAEVDNKEMQVKRRSSDDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQ 861
               R+Y         Q KR   + +  F K      ++ K G  + LDDDG    G  + 
Sbjct: 895  LFYRAYTD-------QEKRIGMNVVEQFEKPYRSDTLKLKQGTYEKLDDDGIVAPGVRVT 947

Query: 862  SGDIVIGKYADSGADH---------------SIKLKHTERGMVQKVVLSSNDDGKNFSVV 906
              DI+IGK A    D                S  L+ TE G+V +V+L++N +G  F  V
Sbjct: 948  GADIIIGKTAPIAPDSEEMGQRTKAHVKRDASTPLRSTESGLVDQVLLTTNAEGLRFVKV 1007

Query: 907  SLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQL 966
             +R  + P +GDKF+S HGQKG +G    Q++ PFT +G+VPD++INPHA PSR T   L
Sbjct: 1008 RMRTTKIPQIGDKFASRHGQKGTIGITYMQQDMPFTREGVVPDLIINPHAIPSRMTIAHL 1067

Query: 967  LEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEM 1026
            +E  L K +++L      GL+  ATPF   +VD++++ L   G+   G E +Y G TG  
Sbjct: 1068 IECQLSK-VSSL-----RGLEGDATPFTEVTVDSVSKLLRAHGYHSRGFEIMYHGHTGRK 1121

Query: 1027 VRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIA 1086
            + + +F+GPT+YQRL HM +DK+  R  GPV  LTRQPV  R R GG++FGEMERDC+I+
Sbjct: 1122 MMAQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRFGEMERDCMIS 1181

Query: 1087 HGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKA 1146
            HGA+A L ERLF +SD++++HIC  C  +   I ++  G  +     CR C +   I + 
Sbjct: 1182 HGASAFLKERLFEVSDAFRVHICDIC-GLMTPIAKINTGSFE-----CRPCKNKTKISQI 1235

Query: 1147 NVPYGAKLLCQELFSMGITLKFDTE 1171
            ++PY AKLL QEL +M I  +  T+
Sbjct: 1236 HIPYAAKLLFQELAAMNIATRMFTK 1260


>gi|396082220|gb|AFN83830.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon romaleae
            SJ-2008]
          Length = 1141

 Score =  638 bits (1645), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 415/1198 (34%), Positives = 626/1198 (52%), Gaps = 131/1198 (10%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            SFF + GLV  Q++S+++F++  +Q+  +     IV+    P+   E + R  ++RFGQ+
Sbjct: 16   SFFEQKGLVRQQLDSFDQFVRTKMQEVINENPAIIVQSA--PTAGTEIQKR-ITVRFGQI 72

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             + KP  +  + G    +FP  AR++++TY+S + + V  +  ++  V  DK K  R   
Sbjct: 73   YVSKPPIYTESDGRTITVFPNEARIRDLTYASPLFIDVIKETVSELGVV-DKHKYSR--- 128

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
                        +  G +PVM++S  C + G      ++ G+C +D GGYFI+ G+EKV 
Sbjct: 129  ------------VPFGSLPVMLRSSYCVLHGLGDKDLIDLGECPYDQGGYFIVNGSEKVI 176

Query: 206  VAQEQICLKRLWV---SNSMGWT-------VAYKSENKRNRLIVRLVDMSKFEDIKGGEK 255
            VAQE++    ++V   +    +T       V  KS    + L ++L           G  
Sbjct: 177  VAQERMASNTVYVFKKAQPATYTHYAEIRSVPEKSSRNPSTLSMKLCR-------SPGAI 229

Query: 256  VLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFR 315
             +S+  +  +IP+++L+ ALG  SDKEI++ I +  +D  +  +L  SI +     D+  
Sbjct: 230  RVSLPLVKQDIPLFVLYRALGFLSDKEIIDHILYEDDD-EMFELLKESIEEGTVVQDQ-- 286

Query: 316  KGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLHGTKQ-----KARFLGY 363
                AL Y+ K     + P G   E       + +   + P + GT++     KA F+GY
Sbjct: 287  --NVALDYIGK----RSAPVGTPQEKRITIARDLLAKEVLPHI-GTQEFCETKKAYFIGY 339

Query: 364  MVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDR 423
            +V+ LL    GRR  D+RD +  KR++L+G LL    +           + +Q+ +   R
Sbjct: 340  IVQRLLLVALGRRNPDDRDHYGKKRMDLSGPLLASLFRTLFKKLCADTTRHMQKCIENGR 399

Query: 424  TVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTR 483
                I   L ASI+T G   A +TG W    K  +  +G+   L R N + TL  LRR  
Sbjct: 400  EFN-IALGLKASIITQGFRYALATGNWGDQAKAMQTRAGVAQVLNRYNFVSTLSHLRRVN 458

Query: 484  QQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLF 542
              ++  GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  S   P+ E L 
Sbjct: 459  TPIEKEGKLAAPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMAYISVGSSSGPLIEFLE 518

Query: 543  NSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
              G+E L + ++  L    KVFV+G W+G+  D +  +  L+  RR  E+  +V I RD 
Sbjct: 519  ECGVESLEEISTLQLSTATKVFVNGVWVGIHSDPVYLIKSLKLLRRSLEIDKEVSIVRDI 578

Query: 603  LQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIELVGTEEE 656
             + E+RI  DAGR  RPL+VV +      +  I+ L      +  L+  G IE +  EEE
Sbjct: 579  REKEIRIQSDAGRPCRPLMVVRDNKLVITIEDIRKLRRGEIKWDNLIGEGFIEFLDVEEE 638

Query: 657  EDCCTAWGIKYLLKDIEDKKPIK--FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQ 714
            E    A   K L  + ++   +K  +THCE+  + +LG+    IPF +H+ + R  YQS 
Sbjct: 639  EMSMIAMSTKVLNDECKNSSDVKISYTHCEIHPALILGICASTIPFPDHNQSPRNTYQS- 697

Query: 715  KHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNG 774
                QA+G   TN  +R+DTLS+ LFYPQ+PL  T                L   EL +G
Sbjct: 698  AMGKQAMGIYATNFLLRMDTLSNILFYPQKPLVTT-----------KSMEYLRFKELPSG 746

Query: 775  QNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAE-------VDNKEMQVKRR 827
            QNA+VA+  + GYNQEDS++MN+++++RG+FRS   R+Y  +       V+ +  +  R 
Sbjct: 747  QNALVAIACYSGYNQEDSIIMNQSAIDRGLFRSFFYRTYTDQESMSRPGVNEEFCKPNRG 806

Query: 828  SSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD--------------S 873
            S   M N           + LD+DG    G  +   D++IGK                  
Sbjct: 807  SVLRMKNLN--------YNKLDEDGLISPGVRVTGDDVLIGKITPILDPERSTKEAPVYV 858

Query: 874  GADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
              D S  ++ TE G+V  V+++ N DG  FS V +R  R P +GDKF+S H QKG +G  
Sbjct: 859  YKDSSTAMRRTETGIVDTVIVT-NKDGYKFSKVKIRSGRIPQMGDKFASRHAQKGTIGIT 917

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
              QE+ PFT  GIVPDI+INPHA PSR T G L+E  LGK ++A+     SG +  ATPF
Sbjct: 918  LRQEDMPFTSDGIVPDIIINPHAIPSRMTIGHLIECLLGK-VSAM-----SGEEGDATPF 971

Query: 994  ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
            +  SV+ I+ +L   GF + G E +Y+G TG  +R+ IF GPT+YQRL HM +DK+  R 
Sbjct: 972  SGMSVNEISTRLKSYGFQQRGLEVMYNGMTGRKLRAQIFFGPTYYQRLKHMVDDKIHARA 1031

Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
             GP+  LTRQPV  R R GG++FGEMERDC+I+HGA+A L ERL  +SD+Y  ++C  C 
Sbjct: 1032 RGPLQILTRQPVEGRSRDGGLRFGEMERDCIISHGASAFLKERLMDVSDAYSCYVCNLCG 1091

Query: 1114 NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
             +A        GG KV    C+ C++  ++    +PY  KLL QEL  M I  +   E
Sbjct: 1092 LLAM-------GGTKVNE--CKGCNNTTNVSMVEIPYAFKLLIQELMGMNIAPRIRFE 1140


>gi|310792957|gb|EFQ28418.1| RNA polymerase Rpb2 [Glomerella graminicola M1.001]
          Length = 1259

 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 433/1265 (34%), Positives = 648/1265 (51%), Gaps = 159/1265 (12%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGE-TIVEPGYDPSKKGEGEWRYA 84
            C     SFF   GLVS Q++S++EF  + +Q+  D + + T+ +P            R  
Sbjct: 26   CWTVISSFFESKGLVSQQVDSFDEFTSSTVQELIDEYSQITLDQPNPMSDSDKVIALRRY 85

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKV--QFQVYTQKRVTSD 142
             ++FG V + +PS    +G     + P   R +N+TY+S + VK+  +  +  +K +  +
Sbjct: 86   EVKFGTVMVSRPSITEADG-KVTTLLPYECRDRNLTYASPLYVKITKKVSIAVEKPIPLN 144

Query: 143  KF---------KTGRE-------------QYIQKEVLSDETTNII-IGRIPVMVKSDLCW 179
            +           TG                Y   +  SD+  ++I IGR+P+MVKS +C 
Sbjct: 145  ELDEEQQDELANTGEHPTKLEWEEEESGEDYGADKNKSDDMKDMIFIGRMPIMVKSKICH 204

Query: 180  MKGVEKGD------CDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAY 228
            +   ++ D      C +D GGYFII G+EKV +AQE+     + V      +   +T   
Sbjct: 205  LSSEQEDDLFMLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKAQPSPYSYTAEI 264

Query: 229  KSE-NKRNRLI--VRLVDMSKFEDIKGGEKVL---SVYFLSTEIPIWILFFALGVSSDKE 282
            +S   K +RLI  + L   SK +  KGG       S+ ++  ++PI I+F ALGV SD++
Sbjct: 265  RSALEKGSRLISSMMLKLYSKGDAAKGGYGQTIHCSLPYVKADLPIAIVFRALGVVSDED 324

Query: 283  IVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGE---ST 339
            I+N I +   D  +L +L   I +A   C + R+   AL ++ K       P  +   + 
Sbjct: 325  ILNHICYDRNDSQMLEMLRPCIEEA--FCIQDREV--ALDFIGKRGSNHNIPREKRVRTA 380

Query: 340  EECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGEL 395
            ++ +     P +  ++    +KA FLGYMV  LLQ   GRR  D+RD F  KRL+LAG L
Sbjct: 381  KDILQKETLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDTDDRDHFGKKRLDLAGPL 440

Query: 396  LERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFK 455
            L +  +  +    + ++  L+R +  +R    +   +    L+NGL  + +TG W    K
Sbjct: 441  LAKLFRNIVRRMNQELSGHLKRCVESNRQFS-LTLGVKPQTLSNGLKYSLATGNWGDQKK 499

Query: 456  RTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGE 515
                 +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+
Sbjct: 500  AMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQ 559

Query: 516  NCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCK 574
             CGLVKNL +   VS  +  EPI + +   GME L +          KVF++G W+GV +
Sbjct: 560  ACGLVKNLSLMCYVSVGTPAEPIIDYMIQRGMEVLEEYEPLRYPNATKVFLNGVWVGVHQ 619

Query: 575  DSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEG 634
            D    V +++  RRR  +  +V + RD    E +IF DAGR++RP+ VVE        +G
Sbjct: 620  DPRILVPDVQGTRRRNVISHEVSLVRDIRDREFKIFSDAGRVMRPVFVVEQSANGIVPQG 679

Query: 635  K------------------------NYTFQALLDHGIIELVGTEEEED---CCTAWGIK- 666
                                       T+++L   G+IE +  EEEE    C T   ++ 
Sbjct: 680  SLVLQKATVNEMREQQENPPDNPADKITWESLAHSGVIEYLDAEEEETAMICMTPEDLEI 739

Query: 667  YLLKD----IED---------KKPIK-----FTHCELDMSFLLGLSCGIIPFANHDHARR 708
            Y L+     +ED         K  I      +THCE+  S LLG+   IIPF +H+ + R
Sbjct: 740  YRLQKQGQVVEDNADGPNSRLKTKINPTTHMYTHCEIHPSMLLGICASIIPFPDHNQSPR 799

Query: 709  VLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPR 768
              YQS     QA+GF  TN S R+DT+++ L+YPQ+PL  T   +            L  
Sbjct: 800  NTYQS-AMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSME-----------FLKF 847

Query: 769  PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSY-----KAEVDNKEMQ 823
             EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   RSY     +  ++  E  
Sbjct: 848  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDCEKRVGINLVEQF 907

Query: 824  VKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH------ 877
             K   SD       ++ K G  D LDDDG    G  +   DI+IGK +    D+      
Sbjct: 908  EKPFRSD------TLRLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTSPISPDNAELGQR 961

Query: 878  ---------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKG 928
                     S  L+ TE G+V +V++++N DG  +  V +R  + P +GDKF+S HGQKG
Sbjct: 962  TTQHVKRDASTPLRSTENGIVDQVIVTTNQDGLRYVKVRVRTTKIPQIGDKFASRHGQKG 1021

Query: 929  VLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKR 988
             +G    QE+ PFT +GI PDI+INPHA PSR T   L+E  L K ++ L      G++ 
Sbjct: 1022 TIGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLLSK-VSTL-----KGMEG 1075

Query: 989  YATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDK 1048
             ATPF   +VD++++ L   G+   G E +Y+G TG  +R+ +F GPT+YQRL HM +DK
Sbjct: 1076 DATPFTDVTVDSVSQLLRDQGYQSRGFEIMYNGHTGRKLRAQVFFGPTYYQRLRHMVDDK 1135

Query: 1049 VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHI 1108
            +  R  GPV  +TRQPV  R R GG++FGEMERDC+IAHGAA+ L ERLF +SD++++H+
Sbjct: 1136 IHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFRVHV 1195

Query: 1109 CRKC---KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
            C  C     +AN+ ++            CR C +   I + ++PY AKLL QEL SM I 
Sbjct: 1196 CEICGLMTPIANLSKQSFE---------CRPCKNKTKIAQIHIPYAAKLLFQELQSMNIA 1246

Query: 1166 LKFDT 1170
             +  T
Sbjct: 1247 ARMFT 1251


>gi|70982424|ref|XP_746740.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus fumigatus Af293]
 gi|66844364|gb|EAL84702.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus fumigatus Af293]
 gi|159123019|gb|EDP48139.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus fumigatus A1163]
          Length = 1255

 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 431/1258 (34%), Positives = 641/1258 (50%), Gaps = 148/1258 (11%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGE--WRY 83
            C     SFF+  GLVS Q++S++EFI + +Q+  +  G+  ++    PS+  +     R 
Sbjct: 25   CWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTLDQTLPPSEDEDDPVVLRR 84

Query: 84   ASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKR----- 138
              ++FG V L +PS   G+G     M P+ ARL+N+TY+S + + +  ++   +      
Sbjct: 85   YELKFGTVMLSRPSVTEGDGATTI-MLPQEARLRNLTYASPLYLGITKRIMEGRERLIAD 143

Query: 139  ----------VTSDKFKTGREQYIQKEVLSDETT--NIIIGRIPVMVKSDLCWMKGVEK- 185
                          K +    Q+ QKE+  D+     + IG++P+M+KS  C +K + + 
Sbjct: 144  RDEDDAAPDADEDRKARGTYLQWEQKELPPDQAKEETVFIGKMPIMLKSKYCILKDLSEQ 203

Query: 186  -----GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE-----NKR 234
                  +C +D GGYFII G+EKV +AQE+     + V   +      Y +E      K 
Sbjct: 204  ALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNTVQVFKKAPPSPTPYVAEIRSAVEKG 263

Query: 235  NRLI--VRLVDMSKFEDIKGG--EKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDF 289
            +RL+  + L   +K +  KGG    + S   ++ T+IPI ++F ALGV SD++I+N I +
Sbjct: 264  SRLLSQLSLKLFAKGDSAKGGFGPTIRSTLPYVKTDIPIVVVFRALGVVSDEDILNHICY 323

Query: 290  TCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES----TEECMNT 345
               D  +L +L   I +     D       AL ++ K     +    E       E M  
Sbjct: 324  DRNDTPMLEMLKPCIEEGFVIQDR----EVALDFIAKRGSSQSSMNHERRVRYAREIMQK 379

Query: 346  YLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELK 401
             L P +  ++    +KA FLGYMV  LLQ   GRR  D+RD F  KRL+LAG LL    +
Sbjct: 380  ELLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFR 439

Query: 402  VHIAHARKRMAKALQRDLYGDRTVRPIEYYLD----ASILTNGLSRAFSTGAWSHPFKRT 457
            V      + + + +QR +  +R     E YL+    AS LT GL  A +TG W    K  
Sbjct: 440  VLFTRVTRDLQRYVQRCVETNR-----EIYLNIGIKASTLTGGLKYALATGNWGEQKKAA 494

Query: 458  ERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENC 517
               +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ C
Sbjct: 495  SSKAGVSQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQAC 554

Query: 518  GLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDS 576
            GLVKNL +   ++  +  EPI + +    ME L +          KVFV+G W+GV +D 
Sbjct: 555  GLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVGVHRDP 614

Query: 577  LSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------- 628
               V+ +   RRR  +  +V + RD  + E +IF DAGR+ RPL VV+N  K        
Sbjct: 615  AHLVNTMLSLRRRNMISHEVSLIRDIREREFKIFTDAGRVCRPLFVVDNDPKSENCGSLV 674

Query: 629  -----IKSLEG---------------KNYTFQALLDHGIIELVGTEEEEDCCTAWGIK-- 666
                 I+ LE                + + +  L+  G++E V  EEEE        +  
Sbjct: 675  LNKDHIRKLEQDKELPADLDPEDRRERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPEDL 734

Query: 667  ---------YLLKDIED----------KKPIKFTHCELDMSFLLGLSCGIIPFANHDHAR 707
                     Y L + +D          +K   +THCE+  S +LG+   IIPF +H+ + 
Sbjct: 735  EISKQLQAGYALPEEDDPNKRVRSVLSQKAHTWTHCEIHPSMILGVCASIIPFPDHNQSP 794

Query: 708  RVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILP 767
            R  YQS     QA+G   TN   R++T+++ L+YPQ+PL  T   +            L 
Sbjct: 795  RNTYQS-AMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSME-----------FLR 842

Query: 768  RPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRR 827
              EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y        + V  R
Sbjct: 843  FRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVER 902

Query: 828  SSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD--------------- 872
                M +   I  + G  D LD+DG    G  +   DI+IGK A                
Sbjct: 903  FEKPMRS-DTIGMRKGTYDKLDEDGIIAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKAH 961

Query: 873  SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGF 932
            +  D S  L+ TE G+V +V++S+++D   F  V +R  + P +GDKF+S HGQKG +G 
Sbjct: 962  TKLDVSTPLRSTENGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGI 1021

Query: 933  LESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATP 992
               QE+ PFT +G+ PD++INPHA PSR T   L+E  L K ++AL      G +  ATP
Sbjct: 1022 TYRQEDMPFTREGVSPDLIINPHAIPSRMTIAHLIECQLSK-VSAL-----RGFEGDATP 1075

Query: 993  FATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFR 1052
            F   +VD+I+  L   G+   G E +Y+G TG  + + +F+GPT+YQRL HM +DK+  R
Sbjct: 1076 FTDVTVDSISRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHAR 1135

Query: 1053 NTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKC 1112
              GP   LTRQPV  R R GG++FGEMERDC+IAHGA+A L ERLF +SD +++HIC  C
Sbjct: 1136 ARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDC 1195

Query: 1113 KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
              +   I ++  G  +     CR+C++   I + ++PY AKLL QEL +M I  +  T
Sbjct: 1196 -GLMTPIAKLKKGLFE-----CRLCNNKHRISQVHIPYAAKLLFQELAAMNIAARMFT 1247


>gi|380478926|emb|CCF43324.1| DNA-directed RNA polymerase II subunit RPB2 [Colletotrichum
            higginsianum]
          Length = 1258

 Score =  637 bits (1643), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 433/1265 (34%), Positives = 648/1265 (51%), Gaps = 159/1265 (12%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGE-TIVEPGYDPSKKGEGEWRYA 84
            C     SFF   GLVS Q++S++EF  + +Q+  D + + T+ +P            R  
Sbjct: 25   CWTVISSFFESKGLVSQQVDSFDEFTSSTVQELIDEYSQITLDQPNPMSDSDKVIALRRY 84

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKV--QFQVYTQKRVTSD 142
             ++FG V + +PS    +G     + P   R +N+TY+S + VK+  +  +  +K +  +
Sbjct: 85   EVKFGTVMVSRPSITEADG-KVTTLLPYECRDRNLTYASPLYVKITKKVSIAVEKPIPLN 143

Query: 143  KF---------KTGRE-------------QYIQKEVLSDETTNII-IGRIPVMVKSDLCW 179
            +           TG                Y   +  SD+  ++I IGR+P+MVKS +C 
Sbjct: 144  ELDEEQQDELANTGEHPTKLEWEEEESGEDYGADKNKSDDMKDMIFIGRMPIMVKSKICH 203

Query: 180  MKGVEKGD------CDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAY 228
            +   ++ D      C +D GGYFII G+EKV +AQE+     + V      +   +T   
Sbjct: 204  LSSEQEDDLFMLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKAQPSPYSYTAEI 263

Query: 229  KSE-NKRNRLI--VRLVDMSKFEDIKGGEKVL---SVYFLSTEIPIWILFFALGVSSDKE 282
            +S   K +RLI  + L   SK +  KGG       S+ ++  ++PI I+F ALGV SD++
Sbjct: 264  RSALEKGSRLISSMMLKLYSKGDAAKGGYGQTIHCSLPYVKADLPIAIVFRALGVVSDED 323

Query: 283  IVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGE---ST 339
            I+N I +   D  +L +L   I +A   C + R+   AL ++ K       P  +   + 
Sbjct: 324  ILNHICYDRNDSQMLEMLRPCIEEA--FCIQDREV--ALDFIGKRGSNHNIPREKRVRTA 379

Query: 340  EECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGEL 395
            ++ +     P +  ++    +KA FLGYMV  LLQ   GRR  D+RD F  KRL+LAG L
Sbjct: 380  KDILQKETLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDTDDRDHFGKKRLDLAGPL 439

Query: 396  LERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFK 455
            L +  +  +    + ++  L+R +  +R    +   +    L+NGL  + +TG W    K
Sbjct: 440  LAKLFRNIVRRMNQELSGHLKRCVESNRQFS-LTLGVKPQTLSNGLKYSLATGNWGDQKK 498

Query: 456  RTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGE 515
                 +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+
Sbjct: 499  AMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQ 558

Query: 516  NCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCK 574
             CGLVKNL +   VS  +  EPI + +   GME L +          KVF++G W+GV +
Sbjct: 559  ACGLVKNLSLMCYVSVGTPAEPIIDYMIQRGMEVLEEYEPLRYPNATKVFLNGVWVGVHQ 618

Query: 575  DSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEG 634
            D    V +++  RRR  +  +V + RD    E +IF DAGR++RP+ VVE        +G
Sbjct: 619  DPRILVPDVQGTRRRNVISHEVSLVRDIRDREFKIFSDAGRVMRPVFVVEQGANGIVPQG 678

Query: 635  K------------------------NYTFQALLDHGIIELVGTEEEED---CCTAWGIK- 666
                                       T+++L   G+IE +  EEEE    C T   ++ 
Sbjct: 679  SLVLQKATVNEMRDQQENPPDNPADKITWESLAHSGVIEYLDAEEEETAMICMTPEDLEI 738

Query: 667  YLLKD----IED---------KKPIK-----FTHCELDMSFLLGLSCGIIPFANHDHARR 708
            Y L+     +ED         K  I      +THCE+  S LLG+   IIPF +H+ + R
Sbjct: 739  YRLQKQGQVVEDNTDGPNSRLKTKINPTTHMYTHCEIHPSMLLGICASIIPFPDHNQSPR 798

Query: 709  VLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPR 768
              YQS     QA+GF  TN S R+DT+++ L+YPQ+PL  T   +            L  
Sbjct: 799  NTYQS-AMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSME-----------FLKF 846

Query: 769  PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSY-----KAEVDNKEMQ 823
             EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   RSY     +  ++  E  
Sbjct: 847  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDCEKRVGINLVEQF 906

Query: 824  VKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH------ 877
             K   SD       ++ K G  D LDDDG    G  +   DI+IGK +    D+      
Sbjct: 907  EKPFRSD------TLRLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTSPISPDNAELGQR 960

Query: 878  ---------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKG 928
                     S  L+ TE G+V +V++++N DG  +  V +R  + P +GDKF+S HGQKG
Sbjct: 961  TTQHVKRDASTPLRSTENGIVDQVIVTTNQDGLRYVKVRVRTTKIPQIGDKFASRHGQKG 1020

Query: 929  VLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKR 988
             +G    QE+ PFT +GI PDI+INPHA PSR T   L+E  L K ++ L      G++ 
Sbjct: 1021 TIGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLLSK-VSTL-----KGMEG 1074

Query: 989  YATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDK 1048
             ATPF   +VD++++ L   G+   G E +Y+G TG  +R+ +F GPT+YQRL HM +DK
Sbjct: 1075 DATPFTDVTVDSVSQLLRDQGYQSRGFEIMYNGHTGRKLRAQVFFGPTYYQRLRHMVDDK 1134

Query: 1049 VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHI 1108
            +  R  GPV  +TRQPV  R R GG++FGEMERDC+IAHGAA+ L ERLF +SD++++H+
Sbjct: 1135 IHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFRVHV 1194

Query: 1109 CRKC---KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
            C  C     +AN+ ++            CR C +   I + ++PY AKLL QEL SM I 
Sbjct: 1195 CEICGLMTPIANLSKQSFE---------CRPCKNKTKIAQIHIPYAAKLLFQELQSMNIA 1245

Query: 1166 LKFDT 1170
             +  T
Sbjct: 1246 ARMFT 1250


>gi|389751199|gb|EIM92272.1| DNA-dependent RNA polymerase II second largest subunit [Stereum
            hirsutum FP-91666 SS1]
          Length = 1230

 Score =  637 bits (1642), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 414/1237 (33%), Positives = 641/1237 (51%), Gaps = 143/1237 (11%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYAS 85
            C     SFF+E GLV  Q++S++EF++N +Q+  +   + I++     +       R   
Sbjct: 36   CWTVISSFFDEKGLVRQQLDSFDEFVQNTMQELIEENADLILDQADQHTGHDNDVTRRYE 95

Query: 86   MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
            + F QV L + +    +G     +FP+ ARL+N+TYSS + V+V           + +F 
Sbjct: 96   LHFNQVYLSRATVTEADGSVV-PVFPQEARLRNLTYSSPLYVEV-----------ARRFS 143

Query: 146  TGREQ------YIQKEVLSDETTN-----IIIGRIPVMVKSDLCWMKGV------EKGDC 188
             GRE        I  EV  DE +      + IG++P+M++S  C +  +      +  +C
Sbjct: 144  VGREDPDGQAGEINWEVEVDEISTKEFQKVWIGKLPLMLRSQFCILSELGENELYDLNEC 203

Query: 189  DFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKRNRLIVRLVD 243
             +D GGYFII G+EKV +AQE++    ++V      + + +    +S  ++    +    
Sbjct: 204  PYDSGGYFIINGSEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQ 263

Query: 244  MSKF---EDIKGGEKV-LSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNI 299
            +  +   +D   G  +  ++ ++  +IPIW++F ALGV SD++I+  I +  ED  +L +
Sbjct: 264  VKMYHRNQDKTSGNVIKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMEDAQMLEM 323

Query: 300  LFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLH 352
            L   I D     D       AL ++    +GTT   G S E       E +   + P + 
Sbjct: 324  LKPCIDDGFVIQDR----EIALDFIGN--RGTT--TGLSRERRLRYAQEILQKEMLPHIS 375

Query: 353  GTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHAR 408
             ++    +KA F GYM+  LL A   RR+ D+RD F  KRL+LAG LL    ++      
Sbjct: 376  MSEGSESKKAYFFGYMIHRLLLAAMERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLT 435

Query: 409  KRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLG 468
            + + + LQ+ +   +    +   +  + +TNGL  + +TG W    K     +G+   L 
Sbjct: 436  RDVYRYLQKCVETHKDFN-LNLAVKHNTITNGLKYSLATGNWGDQKKSMASKAGVSQVLN 494

Query: 469  RANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGL 528
            R     TL  LRR    +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   
Sbjct: 495  RYTYASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMAT 554

Query: 529  VSTSILE-PIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKR 587
            +S   L  P+ + L   G+E L ++A +S     KVFV+G W+GV +D  + +  +++ R
Sbjct: 555  ISVGSLSLPVIDFLEEWGLESLEENA-HSATPTTKVFVNGVWMGVHRDPANLIKTIKKLR 613

Query: 588  RRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------------MGKIKSLEGK 635
            R+ ++  +V I RD  + E+R++ DAGR+ RPL VVE+            + +     G+
Sbjct: 614  RKDDIHPEVSIVRDIRERELRLYTDAGRVCRPLFVVEDQQLAVTKKHINMLTRGTDDNGE 673

Query: 636  NYTFQALLDHGIIELVGTEEEED---CCT----------AWGIKYLLKDIEDKKPIK--- 679
             + +  L+  G++E +  EEEE    C T          + GI    +D  D  P     
Sbjct: 674  EFKWNNLIKSGVVEYLDAEEEETVMICMTPEDLENSRLQSSGINPHAED-SDFDPAARLK 732

Query: 680  ---------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSI 730
                     +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN  +
Sbjct: 733  ASSGLNTHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAM-GKQAMGIYLTNFLV 791

Query: 731  RVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQE 790
            R+DT+++ L+YPQ+PL  T   +            L   EL  GQNAIVA+  + GYNQE
Sbjct: 792  RMDTMANILYYPQKPLATTRSME-----------YLKFRELPAGQNAIVAILCYSGYNQE 840

Query: 791  DSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDD 850
            DS++MN++S++RG+FRS + RSY  +++ K    +    +       ++ K G  D L+D
Sbjct: 841  DSVIMNQSSIDRGLFRSIYYRSY-MDLEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKLED 899

Query: 851  DGFPFIGANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLS 895
            DG    G  +   DI+IGK A                +  D S  LK TE G+V +V+++
Sbjct: 900  DGLIAPGTGVNGEDIIIGKTAPIPPDSEELGQRTRIHTRRDVSTPLKSTESGIVDQVLIT 959

Query: 896  SNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPH 955
            +N +G+ F  V +R  R P +GDKF+S HGQKG +G    QE+ PFT +GI PDIVINPH
Sbjct: 960  TNHEGQKFVKVRVRATRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIVINPH 1019

Query: 956  AFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGT 1015
            A PSR T G L+E  L K    +G       +  ATPF   +V+++++ L   G+   G 
Sbjct: 1020 AIPSRMTIGHLVECLLSKVATLIGN------EGDATPFTDLTVESVSQFLRAQGYQSRGL 1073

Query: 1016 ERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIK 1075
            E +Y G TG  +++ +++GPT+YQRL HM +DK+  R  GPV  LTRQPV  R R GG++
Sbjct: 1074 EVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLR 1133

Query: 1076 FGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKC--KNVANVIQRVVGGGRKVRGPY 1133
            FGEMERDC+I+HG A  L ERLF  SD+Y++H+C  C    +AN+         K +   
Sbjct: 1134 FGEMERDCMISHGVAGFLKERLFDASDAYRLHVCDICGLTAIANL---------KKQSFE 1184

Query: 1134 CRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
            CR C +     + ++PY AKLL QEL SM I  +  T
Sbjct: 1185 CRACKNKTACSQIHIPYAAKLLFQELQSMNIAARLYT 1221


>gi|154279576|ref|XP_001540601.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Ajellomyces
            capsulatus NAm1]
 gi|150412544|gb|EDN07931.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Ajellomyces
            capsulatus NAm1]
          Length = 1743

 Score =  637 bits (1642), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 431/1260 (34%), Positives = 640/1260 (50%), Gaps = 147/1260 (11%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPS--KKGEGEWRY 83
            C     SFF   GLVS Q++S++EFI   +Q+  +  G+  ++    P+  K      R 
Sbjct: 510  CWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPAEDKIDPVVLRR 569

Query: 84   ASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT-------- 135
              ++FG V L +PS   G+G     M P+ ARL+N+TY+S + + +  +V          
Sbjct: 570  YELKFGTVMLARPSMTEGDGATSI-MLPQEARLRNLTYASPLYLGITKRVTEGRERLIAE 628

Query: 136  -----QKRVTSDKFKTGREQYIQKE--VLSD---ETTNIIIGRIPVMVKSDLCWMKGVEK 185
                 Q    +D+ +  R  Y+  E   L++   E  N+ IGR+P+M+KS  C +K + +
Sbjct: 629  RDDAEQGEEDNDEERRSRGTYLHWEPKALNEDEPEEENVFIGRMPIMLKSKYCILKDLNE 688

Query: 186  ------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKR 234
                   +C +D GGYFII G+EKV +AQE+     + V      +   +    +S  ++
Sbjct: 689  QSLYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAVEK 748

Query: 235  NRLIVRLVDMSKFEDIKG-------GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNL 286
               I+  + +  F   KG       G  + S   ++ T+IPI ++F ALGV SD++I+N 
Sbjct: 749  GSRILSQLSIKLFG--KGDTSKSGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDEDILNH 806

Query: 287  IDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES----TEEC 342
            I +   D  +L +L   I +     D       AL ++ K     T    E       + 
Sbjct: 807  ICYDRNDTPMLEMLKPCIEEGFVIQDR----EVALDFISKRGSSPTSMNHEKRVRYARDI 862

Query: 343  MNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLER 398
            +     P +  ++    +KA FLGYMV  LLQ   GRR  D+RD F  KRL+LAG LL  
Sbjct: 863  IQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLAN 922

Query: 399  ELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTE 458
              ++      K + K +QR +  +R +  +   + AS L+ GL  A +TG W    K   
Sbjct: 923  LFRILFMRVTKDLYKYVQRCVETNRQLY-LNIGVKASTLSGGLKYALATGNWGEQKKAAS 981

Query: 459  RISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCG 518
              +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ CG
Sbjct: 982  SKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACG 1041

Query: 519  LVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSL 577
            LVKNL +   ++  +  EPI + +    ME L +          KVFV+G W+GV +D  
Sbjct: 1042 LVKNLALMCCITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNATKVFVNGVWVGVHRDPS 1101

Query: 578  SFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK--------- 628
              VS ++  RRR  +  +V + RD    E +IF DAGR+ RPL VVEN  K         
Sbjct: 1102 HLVSTVQSLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVVENDPKSENCGSLVL 1161

Query: 629  ----IKSLEG---------------KNYTFQALLDHGIIELVGTEEEE---------DCC 660
                I  LE                + + +  L+  G++E V  EEEE         D  
Sbjct: 1162 SKEHIHKLEADKELPPDLDPEERRERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPEDLE 1221

Query: 661  TAWGIK--YLLKDIEDKKPIK------------FTHCELDMSFLLGLSCGIIPFANHDHA 706
            T+  ++  + L + ++  P +            +THCE+  S +LG+   IIPF +H+ +
Sbjct: 1222 TSKQLQAGFSLPEEDNNDPNRRVRSTLSQKTHTWTHCEIHPSMILGICASIIPFPDHNQS 1281

Query: 707  RRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHIL 766
             R  YQS     QA+G   TN   R++T+++ L+YPQ+PL  T                L
Sbjct: 1282 PRNTYQS-AMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTR-----------SMEFL 1329

Query: 767  PRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKR 826
               EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y        M V  
Sbjct: 1330 KFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGMTVVE 1389

Query: 827  RSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD-------------- 872
            R    M +   ++ K G  D +DDDG    G  +   DI+IGK A               
Sbjct: 1390 RFEKPMRS-DTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKQ 1448

Query: 873  -SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLG 931
             +  D S  L+ TE G+V +V++S+++D   F  V +R  + P +GDKF+S HGQKG +G
Sbjct: 1449 HTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIG 1508

Query: 932  FLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYAT 991
                QE+ PFT +GIVPD++INPHA PSR T   L+E  L K +++L      G +  AT
Sbjct: 1509 ITYRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSK-VSSL-----RGFEGDAT 1562

Query: 992  PFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKF 1051
            PF   +VD+I+  L   G+   G E +Y+G TG  + + +F+GPT+YQRL HM +DK+  
Sbjct: 1563 PFTDVTVDSISSLLREHGYQSRGFEVMYNGYTGRKLVAQVFLGPTYYQRLRHMVDDKIHA 1622

Query: 1052 RNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRK 1111
            R  GP   LTRQPV  R R GG++FGEMERDC+IAHGA+A L ERLF +SD +++HIC  
Sbjct: 1623 RARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDI 1682

Query: 1112 CKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
            C  +   I ++  G  +     CR C + + I + ++PY AKLL QEL SM I  +  T+
Sbjct: 1683 C-GLMTPIAKLKKGDFE-----CRACKNKNKISQVHIPYAAKLLFQELMSMNIAARMFTK 1736


>gi|449330210|gb|AGE96471.1| DNA-directed RNA polymerase II second largest subunit
            [Encephalitozoon cuniculi]
          Length = 1141

 Score =  636 bits (1641), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 413/1198 (34%), Positives = 626/1198 (52%), Gaps = 131/1198 (10%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            SFF + GLV  Q++S+++F+K  +Q+  +     IV+    P+   E + R A +RFGQ+
Sbjct: 16   SFFEQKGLVRQQLDSFDQFVKTKMQEVINESPVIIVQSA--PTAGIETQKRIA-VRFGQI 72

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             + KP  +  + G    +FP  AR++++TY+S + + V  +  ++  V  DK K  R   
Sbjct: 73   YVSKPPVYTESDGRTITVFPNEARIRDLTYASPLFIDVTKETLSELGVV-DKHKYSR--- 128

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
                        +  G +PVM++S  C + G      ++ G+C +D GGYFI+ G+EKV 
Sbjct: 129  ------------VPFGSLPVMLRSSYCVLYGLGDKDLIDLGECPYDQGGYFIVNGSEKVI 176

Query: 206  VAQEQICLKRLWV---SNSMGWT-------VAYKSENKRNRLIVRLVDMSKFEDIKGGEK 255
            VAQE++    ++V   +    +T       V  KS    + L ++L           G  
Sbjct: 177  VAQERMASNTVYVFKKAQPATYTHYAEIRSVPEKSSRNPSTLSMKLCR-------SPGVI 229

Query: 256  VLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFR 315
             +S+  +  ++P+++L+ ALG  SDKEI++ I +  +D  +  +L  SI +     D+  
Sbjct: 230  RVSLPLVKQDVPLFVLYRALGFLSDKEIIDHILYE-DDEEMFELLKESIEEGTVVQDQ-- 286

Query: 316  KGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLHGTKQ-----KARFLGY 363
                AL Y+ K     + P G   E       + +   + P + GT++     KA F+GY
Sbjct: 287  --NVALDYIGK----RSAPIGTPQEKRIVMAKDLLAKEVLPHI-GTQEFCETKKAYFIGY 339

Query: 364  MVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDR 423
            +V+ LL    GRR  D+RD +  KR++L+G LL    +           + +Q+ +   R
Sbjct: 340  IVQRLLLVALGRRNPDDRDHYGKKRMDLSGPLLASLFRTLFKKLCVDTTRHMQKCIENGR 399

Query: 424  TVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTR 483
                I   L ASI+T G   A +TG W    K  +  +G+   L R N + TL  LRR  
Sbjct: 400  EFN-IALGLKASIITQGFRYALATGNWGDQAKAMQTRAGVAQVLNRYNFVSTLSHLRRVN 458

Query: 484  QQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLF 542
              ++  GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  S   P+ E L 
Sbjct: 459  TPIEKEGKLAAPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMAYISVGSSSGPLIEFLE 518

Query: 543  NSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
              G+E L + ++  L    K+FV+G W+G+  D +  +  L+  RR  E+  +V I RD 
Sbjct: 519  ECGVESLEEISTSQLDAATKIFVNGVWVGIHSDPVGLIKSLKLLRRSLEMDKEVSIVRDI 578

Query: 603  LQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIELVGTEEE 656
             + E+R+  DAGR  RPLLVV++         I+ L+     +  L+  G IE +  EEE
Sbjct: 579  REKEIRVQSDAGRPCRPLLVVKDNKLVITAEDIRKLKRGEIKWDNLVTSGFIEFLDVEEE 638

Query: 657  EDCCTAWGIKYLLKDIEDKK--PIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQ 714
            E    A   K L  +  +     + +THCE+  + +LG+    IPF +H+ + R  YQS 
Sbjct: 639  EMSMIAMNTKILADESRNSSDVSVSYTHCEIHPALILGICASTIPFPDHNQSPRNTYQS- 697

Query: 715  KHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNG 774
                QA+G   TN  +R+DTLS+ LFYPQ+PL  T                L   EL +G
Sbjct: 698  AMGKQAMGIYATNFLLRMDTLSNILFYPQKPLVTT-----------KSMEYLRFKELPSG 746

Query: 775  QNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAE-------VDNKEMQVKRR 827
            QNA+VA+  + GYNQEDS++MN+++++RG+FRS   R+Y  +       V+ +  +  R 
Sbjct: 747  QNALVAIACYSGYNQEDSIIMNQSAIDRGLFRSFFYRTYTDQESMSRPGVNEEFCKPSRG 806

Query: 828  SSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD--------------S 873
            +   M N           + LDDDG    G  +   D++IGK                  
Sbjct: 807  AVLRMKNLN--------YNKLDDDGLISPGTRVTGDDVLIGKITPILDPERSTKEAPVYV 858

Query: 874  GADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
              D S  ++ TE G+V  V+++ N DG  FS V +R  R P +GDKF+S H QKG +G  
Sbjct: 859  YKDSSTAMRRTETGIVDTVIVT-NKDGYKFSKVKVRSGRIPQMGDKFASRHAQKGTIGIT 917

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
              QE+ PFT +GIVPDI+INPHA PSR T G L+E  LGK ++A+     SG +  ATPF
Sbjct: 918  LRQEDMPFTSEGIVPDIIINPHAIPSRMTIGHLIECLLGK-VSAM-----SGEEGDATPF 971

Query: 994  ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
            +  +VD I+ +L   GF + G E +Y+G TG  +R+ +F GPT+YQRL HM +DK+  R 
Sbjct: 972  SGVTVDGISSRLKSYGFQQRGLEVMYNGMTGRKLRAQMFFGPTYYQRLKHMVDDKIHARA 1031

Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
             GP+  LTRQPV  R R GG++FGEMERDC+I+HGA+A L ERL  +SD+Y  ++C  C 
Sbjct: 1032 RGPLQILTRQPVEGRSRDGGLRFGEMERDCIISHGASAFLKERLMDVSDAYSCYVCDFCG 1091

Query: 1114 NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
             +A        GG KV    C+ C++  ++    +PY  KLL QEL  M I  +   E
Sbjct: 1092 LLAM-------GGSKVN--ECKGCNNTTNVSMVEIPYAFKLLIQELMGMNIAPRIRFE 1140


>gi|6606093|gb|AAF19059.1|AF107787_1 DNA-dependent RNA polymerase II RPB140 [Candida albicans]
          Length = 1210

 Score =  636 bits (1641), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 425/1253 (33%), Positives = 643/1253 (51%), Gaps = 144/1253 (11%)

Query: 3    SDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSF 62
            S D    DP     + E   +  C     SFF E GLVS Q++S++EF++  +Q+     
Sbjct: 2    SADESMADPYQYDSIDEPITQEDCWTVITSFFQEKGLVSQQLDSFDEFVETSIQELVWED 61

Query: 63   GETIV-EPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTY 121
               I+ +P    S+K     RY  + FG++ + KPS   G+G   H +FP+ ARL+N+TY
Sbjct: 62   SHLILDQPAQHTSEKDHENKRY-EITFGKIYISKPSQTEGDGS-THAVFPQEARLRNLTY 119

Query: 122  SSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMK 181
            SS + V +  +V+   +   +K K    ++IQ+E   D  T + +G++P+M++S  C ++
Sbjct: 120  SSPLYVDMTSKVF---KSDDNKRKDNELEWIQEEPDKDTETKVFLGKVPIMLRSKFCMLR 176

Query: 182  GV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE--- 231
             +      E  +C +D GGYF+I G+EKV +AQE+     + V   +    +++ +E   
Sbjct: 177  DLAEHEFYELKECPYDMGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRS 236

Query: 232  --NKRNRLIVRLVDMSKFEDIKG--GEKV-LSVYFLSTEIPIWILFFALGVSSDKEIVNL 286
               K +RLI  +       D KG  G  +  ++ ++  +IPI I+F ALGV  D +I+  
Sbjct: 237  AIEKGSRLISSMQIKLYGRDEKGVSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEH 296

Query: 287  IDFTCEDCSILNILFAS------IHDADNKCDEF-RKG------RNALKYVDKLIKGTTF 333
            I +   D  +L +L         I + +   D   R+G         ++Y   +++    
Sbjct: 297  ICYDANDWQMLEMLKPCVEEGFVIQEREVALDFIGRRGVLGIRREKRIQYAKDILQKELL 356

Query: 334  PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAG 393
             P  + EE   T          +KA FLGYMV  LL     R++ D+RD F  KRL+LAG
Sbjct: 357  -PNITQEEGFET----------RKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAG 405

Query: 394  ELLERELKVHIAHARKRMAKALQRDLY--GDRTVRPIEYYLDASILTNGLSRAFSTGAWS 451
             LL    ++      K +   +QR +   GD  V      + +  +T+GL  + +TG W 
Sbjct: 406  PLLANLFRILFKKLTKDIYNYMQRCVENGGDFNV---TLAVKSQTITDGLRYSLATGNWG 462

Query: 452  HPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLST 511
               K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   T
Sbjct: 463  EQRKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAET 522

Query: 512  PDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWI 570
            P+G+ CGLVKNL +   +S  +  EPI   L + G+E L D    +     +VFV+G W+
Sbjct: 523  PEGQACGLVKNLSLMTCISVGTPSEPILGFLRDYGLEVLEDYVPSNAPDSTRVFVNGVWV 582

Query: 571  GVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVV------E 624
            GV +D  + V  +R  RR  +L  +V I RD  + E +IF DAGR+ RPL +V      E
Sbjct: 583  GVHRDPAALVDFMRELRRSGDLSPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDNPDSE 642

Query: 625  NMGKIK--------------------SLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWG 664
              G++K                      E   YT+ +L+  GI+E V  EEEE    A  
Sbjct: 643  TKGELKITKEHVKQLLRSDELDEDDEDYENSRYTWSSLVADGIVEYVDAEEEETIMIAMT 702

Query: 665  ------------------IKYLLKDIEDKKPIK---------FTHCELDMSFLLGLSCGI 697
                              I+   ++++  K IK         +THCE+  S +LG++  I
Sbjct: 703  PDDVKASKNSVSESEQQKIQLEEQELDPGKRIKPTTSGNTHTYTHCEIHPSMILGVAASI 762

Query: 698  IPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGK 757
            IPF +H+ + R  YQS     QA+G   TN S+R+DT+++ L+YPQ+PL  T   +    
Sbjct: 763  IPFPDHNQSPRNTYQS-AMGKQAMGVFLTNYSVRMDTMANILYYPQKPLGTTRSME---- 817

Query: 758  PGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEV 817
                    L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   RSY  ++
Sbjct: 818  -------YLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSY-MDI 869

Query: 818  DNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA-- 875
            + ++      + +       ++ K G  + LD+DG    G  +   DI+IGK     A  
Sbjct: 870  EKRQGMKALETFEKPTRSDTLRLKHGTYEKLDEDGLIAPGVRVSGEDIIIGKTTPIPADA 929

Query: 876  -------------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSS 922
                         D S  L+ TE G+V +V+L++N DG  F  V +R  + P +GDKF+S
Sbjct: 930  EELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGSKFVKVRMRTTKVPQIGDKFAS 989

Query: 923  MHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGI 982
             HGQKG +G     E+ PFT +GIVPD++INPHA PSR T   L+E  L K +++L    
Sbjct: 990  RHGQKGTIGVTYRHEDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSK-VSSL---- 1044

Query: 983  CSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLI 1042
             SG +  A+PF   + + I+  L   G+   G E +Y+G TG+ + + +F GPT+YQRL 
Sbjct: 1045 -SGFEGDASPFTDVTTEQISTLLRDHGYQSRGFEVMYNGHTGKKLMAQVFFGPTYYQRLR 1103

Query: 1043 HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSD 1102
            HM +DK+  R  GPV  LTRQPV  R R GG++FGEMERDC+IAHGAA  L ERL   SD
Sbjct: 1104 HMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASD 1163

Query: 1103 SYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLL 1155
            ++++H+C  C  + +VI  +     K     CR C +  +I + ++PY AKLL
Sbjct: 1164 AFRVHVCGMC-GLMSVIANL-----KKNQFECRSCKNKTNIYQIHIPYAAKLL 1210


>gi|346971009|gb|EGY14461.1| DNA-directed RNA polymerase II subunit RPB2 [Verticillium dahliae
            VdLs.17]
          Length = 1260

 Score =  636 bits (1641), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 430/1267 (33%), Positives = 636/1267 (50%), Gaps = 160/1267 (12%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGE-TIVEPGYDPSKKGEGEWRYA 84
            C     SFF+  GLVS Q++S++EF  + +Q+  D +   T+ +P            R  
Sbjct: 26   CWTVISSFFDSKGLVSQQVDSFDEFTTSTVQELIDEYSHITLDQPNPASDSDRAIALRRY 85

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSS----RMKVKVQFQVYTQ---- 136
             ++FG V + +PS    +G     + P   R +N+TY+S    R+  KV   V  Q    
Sbjct: 86   EVKFGTVMVSRPSITEADG-KVSTLLPYECRDRNLTYASPLYVRITKKVSIAVENQIPLN 144

Query: 137  -----------------KRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCW 179
                              R+  ++ ++G +    K+   D    I IGR+P+MVKS +C 
Sbjct: 145  ELDDEQHDEMARTGEHPTRLEWEEEESGDDPGADKDKPEDMKDMIFIGRMPIMVKSKICH 204

Query: 180  MKGVEKGD------CDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAY 228
            +    + D      C +D GGYF+I G+EKV +AQE+     + V      +   +T   
Sbjct: 205  LSRESENDLFMLNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSPFSYTAEI 264

Query: 229  KSE-NKRNRLIVRL-VDMSKFEDIKGGEKVL---SVYFLSTEIPIWILFFALGVSSDKEI 283
            +S   K +RLI  L + +      KGG       ++ ++  +IPI I+F A G+ SD++I
Sbjct: 265  RSALEKGSRLISSLMLKLHSTSPAKGGVGQTIHCTLPYVKVDIPIGIVFRAFGIVSDEDI 324

Query: 284  VNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN-ALKYVDKLIKGTTFPPGE----S 338
            +N I +   D  +L +L   I +A        + RN AL ++ K          E    S
Sbjct: 325  LNHICYDRNDTQMLEMLRPCIEEA-----FIVQDRNVALDWIGKRGNSNHTMTREKRVRS 379

Query: 339  TEECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGE 394
             +E +     P +  ++    +KA FLGYM   LLQ   GRR  D+RD F  KRL+LAG 
Sbjct: 380  AKEILQKETLPHISQSEGSETRKAFFLGYMTHKLLQCALGRRDIDDRDHFGKKRLDLAGP 439

Query: 395  LLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPF 454
            LL +  +  +    + ++  L+R +  +R    +   +    L+NGL  + +TG W    
Sbjct: 440  LLAKLFRTIVRRMNQELSGHLKRCVESNRQFS-LTLGVKPQTLSNGLKYSLATGNWGDQK 498

Query: 455  KRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDG 514
            K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G
Sbjct: 499  KAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEG 558

Query: 515  ENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVC 573
            + CGLVKNL +   VS  +  EPI + +   GME L +          KVF++G W+GV 
Sbjct: 559  QACGLVKNLSLMCYVSVGTPAEPIIDYMIQRGMEVLEEYEPLRYPNATKVFLNGVWVGVH 618

Query: 574  KDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKSLE 633
            +D    V +++  RRR  +  +V + RD    E +IF DAGR++RP+ VVE        +
Sbjct: 619  QDPRVLVPDVQGTRRRNVISHEVSLVRDIRDREFKIFSDAGRVMRPVFVVEQSHHGAVPQ 678

Query: 634  GK------------------------NYTFQALLDHGIIELVGTEEEED---CCTAWGIK 666
            G                           T+Q L   GIIE +  EEEE    C T   ++
Sbjct: 679  GSLVLQKDLVNEMRDQQENPPDNPEDKITWQTLAHSGIIEYLDAEEEETSMICMTPEDLE 738

Query: 667  -YLLK--------DIED-----------KKPIKFTHCELDMSFLLGLSCGIIPFANHDHA 706
             Y L+        DI +           K    +THCE+  S +LG+   IIPF +H+ +
Sbjct: 739  LYRLRKAGHEVEEDISEGPNRRLRTKIAKTTHMYTHCEIHPSMILGICASIIPFPDHNQS 798

Query: 707  RRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHIL 766
             R  YQS     QA+GF  TN S R+DT+++ L+YPQ+PL  T   +            L
Sbjct: 799  PRNTYQS-AMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSME-----------FL 846

Query: 767  PRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSY----KAEVDNKEM 822
               EL  GQNA+VA+  + GYNQEDS++MN++S++RG+FRS   RSY    K    N   
Sbjct: 847  KFRELPAGQNAVVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDCEKRVGINLVE 906

Query: 823  QVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH----- 877
            Q ++   +D +       K G  D LDDDG    G  +   DI+IGK +    D+     
Sbjct: 907  QFEKPFRNDTLRL-----KHGTYDKLDDDGIVAPGVRVSGEDIIIGKTSPINPDNQELGQ 961

Query: 878  ----------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQK 927
                      S  L+ TE G++  V+L++N DG  +  V +R  + P +GDKF+S HGQK
Sbjct: 962  RTMQHVKRDASTPLRSTENGIIDSVILTTNQDGLRYVKVRVRTTKIPQIGDKFASRHGQK 1021

Query: 928  GVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLK 987
            G +G    QE+ PFT +GI PDI+INPHA PSR T   L+E  L K ++ L      G++
Sbjct: 1022 GTIGVTYRQEDMPFTSEGITPDIIINPHAIPSRMTIAHLIECLLSK-VSTL-----KGME 1075

Query: 988  RYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSED 1047
              ATPF   +VD++++ L   G+   G E +Y+G TG+ +R+ +F GPT+YQRL HM +D
Sbjct: 1076 GDATPFTDVTVDSVSQLLRDQGYQSRGFEVMYNGHTGKKLRAQVFFGPTYYQRLRHMVDD 1135

Query: 1048 KVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMH 1107
            K+  R  GPV  +TRQPV  R R GG++FGEMERDC+IAHGAA+ L ERLF +SD++++H
Sbjct: 1136 KIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFRVH 1195

Query: 1108 ICRKC---KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
            IC  C     +AN+ ++            CR C +   I + ++PY AKLL QEL SM I
Sbjct: 1196 ICEICGLMTPIANLSKQSF---------ECRPCKNKTKIAQIHIPYAAKLLFQELQSMNI 1246

Query: 1165 TLKFDTE 1171
              +  T+
Sbjct: 1247 AARMFTD 1253


>gi|224003383|ref|XP_002291363.1| DNA directed RNA polymerase II, second largest subunit [Thalassiosira
            pseudonana CCMP1335]
 gi|220973139|gb|EED91470.1| DNA directed RNA polymerase II, second largest subunit [Thalassiosira
            pseudonana CCMP1335]
          Length = 1196

 Score =  636 bits (1640), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 417/1214 (34%), Positives = 628/1214 (51%), Gaps = 119/1214 (9%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP------GYDPSKKGEG----EW 81
            ++F E GLV  Q++S++EFI+N +Q+  D  G   V P      GYD +   E       
Sbjct: 19   AYFEEKGLVRQQLDSFDEFIQNTMQELVDDSGSIRVSPEIQHLVGYDEANFDETMNSTTK 78

Query: 82   RYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTS 141
            +   ++FGQV L KP+    +G    +MFP  ARL+N+TY++ + V V    Y   RV +
Sbjct: 79   KVFEVKFGQVYLSKPTTVEKDG-TVTNMFPHEARLRNLTYAAPLYVDVTMNEY---RVGN 134

Query: 142  DKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGY 195
            D       + + + V ++E     +G +P+M++S  C +         + G+C +D GGY
Sbjct: 135  DVNVGDPAEDMGEPVSTEEARKEFLGYVPIMLRSLFCVLSDKDDAQLADLGECIYDQGGY 194

Query: 196  FIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKRNR-----LIVRLVDMS 245
            F+I G+EKV VAQE++    ++       +   W +  +S+ + +      L +++    
Sbjct: 195  FVINGSEKVIVAQERMSNNHVYAFKKKQPSKFSWVIETRSQVENSTRPTSTLYIQMYQKG 254

Query: 246  KFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIH 305
                I+G +   ++ ++ T+IP+ I+F ALG  +D++I+  + +   D  ++++   S+ 
Sbjct: 255  GKGAIEGNQIRSTLPYIRTDIPVVIIFRALGYVADRDIIEHVVYDLTDGEMMDLFRPSLE 314

Query: 306  DA-----DNKCDEF--RKGR-------NALKYVDKLIKGTTFPPGESTEECMNTYLFPSL 351
            +A          +F  R+G        + ++Y   +++    P   + E C         
Sbjct: 315  EAFVIQKQEVALDFIGRRGSARDVTKDDRIRYAAGILQKEVLPHVGTEEHC--------- 365

Query: 352  HGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRM 411
                +K  FLGY V  LL    GR   D+RD F  KRL+LAG LL    +V      K +
Sbjct: 366  --ETKKGFFLGYAVHKLLMCKLGRADEDDRDHFGKKRLDLAGPLLGGLFRVLFRKLTKDV 423

Query: 412  AKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRAN 471
             K LQR L   +    I   + ++ +++GL  + +TG W    K     +G+   L R  
Sbjct: 424  RKHLQRCLDEGKHFN-IGAAIKSNHISDGLKYSLATGNWGD--KGNTSKAGVSQVLNRLT 480

Query: 472  PLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST 531
               +L  LRR+   +  TGK    R  H SHWG +C   TP+G+  GLVKN+ +   ++T
Sbjct: 481  YASSLSHLRRSNTPLARTGKQAKPRQLHNSHWGMVCPAETPEGQAVGLVKNMALMAYITT 540

Query: 532  SILE-PIFEQLFNSGMEKLADDASYSLG--GKFKVFVDGDWIGVCKDSLSFVSELRRKRR 588
               + P+ E L     E L D     +      K+FV+G+W+G+ +D    V   R  RR
Sbjct: 541  GTSQVPVMEFLEEFSTENLTDILPSVIAEPNTCKIFVNGNWVGIHRDPKQLVHTFRSLRR 600

Query: 589  RKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENM------GKIKSLEG-----KNY 637
              ++  +V I RD  +SEVRI+ DAGRI RPL +V +         I  L+G     K  
Sbjct: 601  MIDIDAEVSIVRDIPESEVRIYTDAGRICRPLFIVTDQELAIKKHHISQLQGVSPDQKKL 660

Query: 638  TFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGI 697
            T+  LL  G++E V TEEEE    A   K L   + +     +THCE+  S +LG+   I
Sbjct: 661  TWTDLLMEGLVEYVDTEEEETTMIAMEPKDLDMTVGEPYSTTYTHCEIHPSMILGICASI 720

Query: 698  IPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGK 757
            IPF +H+ + R  YQS     QA+G   +N  +R+DT++H L YPQ+PL  T   + L  
Sbjct: 721  IPFPDHNQSPRNTYQSAM-GKQAMGIYASNYQVRMDTMAHVLHYPQKPLCTTRAMEFL-- 777

Query: 758  PGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEV 817
                H   LP     +G N +VA+ ++ GYNQEDSL+MN+++++RG+FRS + R Y  + 
Sbjct: 778  ----HFRELP-----SGVNVVVAIMIYTGYNQEDSLIMNQSAIDRGLFRSSYYRCYNDQE 828

Query: 818  DNKEM-QVKRRSSD--DMVNFGKIQS-KIGRVDSLDDDGFPFIGANLQSGDIVIGKYADS 873
             +  +  V   +S+  +   F   +  K G    LDDDG    G  +   D++IGK A  
Sbjct: 829  KSSSVGSVGALNSEFFERPAFDNCKGMKTGDYGKLDDDGLVSPGTRVSGDDVLIGKTAPM 888

Query: 874  GA-----------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSS 922
             A           D S  +K  E G+V  V++S+  +G  F+ V +R VR P +GDKF+S
Sbjct: 889  DAIANTPSRYTKRDCSTSMKANENGIVDNVLISTTKEGYRFTKVRIRNVRIPQVGDKFAS 948

Query: 923  MHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGI 982
             HGQKG +G    QE+ PFT +GIVPDI++NPHA PSR T  QL+E  LGK   A+ +G 
Sbjct: 949  RHGQKGTIGMTYRQEDMPFTCEGIVPDIIVNPHAIPSRMTIAQLIECILGK--VAVFQG- 1005

Query: 983  CSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLI 1042
            C G    ATPF    VD I+++LH  G+ + G E +Y G TG  + + +FIGPTFYQRL 
Sbjct: 1006 CEG---DATPFTDVHVDDISKRLHAMGYQRHGNEAMYQGHTGRPLNARVFIGPTFYQRLK 1062

Query: 1043 HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSD 1102
            H+ +DKV  R  GPV  LTRQP+  R R GG++ GEMERDCLI HG A  + +R F  SD
Sbjct: 1063 HLVDDKVHSRARGPVAMLTRQPLEGRARDGGLRMGEMERDCLITHGCANFIRDRFFCNSD 1122

Query: 1103 SYQMHICRKCKNVANVIQRVVGGGRKVRGPYC-----RICDSGDDIVKANVPYGAKLLCQ 1157
             Y++HIC +C   A     +     + R P C     +IC       +  +PY  KLL Q
Sbjct: 1123 QYRIHICERCGLTAQ--SNLKKMTYECRTPTCVGLPYKIC-------QVEIPYACKLLFQ 1173

Query: 1158 ELFSMGITLKFDTE 1171
            EL SM I+ +  TE
Sbjct: 1174 ELQSMCISPRIYTE 1187


>gi|19074634|ref|NP_586140.1| DNA-DIRECTED RNA POLYMERASE II SECOND LARGEST SUBUNIT
            [Encephalitozoon cuniculi GB-M1]
 gi|51702025|sp|Q8SR75.1|RPB2_ENCCU RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2
 gi|19069276|emb|CAD25744.1| DNA-DIRECTED RNA POLYMERASE II SECOND LARGEST SUBUNIT
            [Encephalitozoon cuniculi GB-M1]
          Length = 1141

 Score =  636 bits (1640), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 413/1198 (34%), Positives = 626/1198 (52%), Gaps = 131/1198 (10%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            SFF + GLV  Q++S+++F+K  +Q+  +     IV+    P+   E + R A +RFGQ+
Sbjct: 16   SFFEQKGLVRQQLDSFDQFVKTKMQEVINESPVIIVQSA--PTAGIETQKRIA-VRFGQI 72

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             + KP  +  + G    +FP  AR++++TY+S + + V  +  ++  V  DK K  R   
Sbjct: 73   YVSKPPVYTESDGRTITVFPNEARIRDLTYASPLFIDVTKETLSELGVV-DKHKYSR--- 128

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
                        +  G +PVM++S  C + G      ++ G+C +D GGYFI+ G+EKV 
Sbjct: 129  ------------VPFGSLPVMLRSSYCVLYGLGDKDLIDLGECPYDQGGYFIVNGSEKVI 176

Query: 206  VAQEQICLKRLWV---SNSMGWT-------VAYKSENKRNRLIVRLVDMSKFEDIKGGEK 255
            VAQE++    ++V   +    +T       V  KS    + L ++L           G  
Sbjct: 177  VAQERMASNTVYVFKKAQPATYTHYAEIRSVPEKSSRNPSTLSMKLCR-------SPGVI 229

Query: 256  VLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFR 315
             +S+  +  ++P+++L+ ALG  SDKEI++ I +  +D  +  +L  SI +     D+  
Sbjct: 230  RVSLPLVKQDVPLFVLYRALGFLSDKEIIDHILYE-DDEEMFELLKESIEEGTVVQDQ-- 286

Query: 316  KGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLHGTKQ-----KARFLGY 363
                AL Y+ K     + P G   E       + +   + P + GT++     KA F+GY
Sbjct: 287  --NVALDYIGK----RSAPIGTPQEKRIVMAKDLLAKEVLPHI-GTQEFCETKKAYFIGY 339

Query: 364  MVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDR 423
            +V+ LL    GRR  D+RD +  KR++L+G LL    +           + +Q+ +   R
Sbjct: 340  IVQRLLLVALGRRNPDDRDHYGKKRMDLSGPLLASLFRTLFKKLCVDTTRHMQKCIENGR 399

Query: 424  TVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTR 483
                I   L ASI+T G   A +TG W    K  +  +G+   L R N + TL  LRR  
Sbjct: 400  EFN-IALGLKASIITQGFRYALATGNWGDQAKAMQTRAGVAQVLNRYNFVSTLSHLRRVN 458

Query: 484  QQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLF 542
              ++  GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  S   P+ E L 
Sbjct: 459  TPIEKEGKLAAPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMAYISVGSSSGPLVEFLE 518

Query: 543  NSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
              G+E L + ++  L    K+FV+G W+G+  D +  +  L+  RR  E+  +V I RD 
Sbjct: 519  ECGVESLEEISTSQLDAATKIFVNGVWVGIHSDPVGLIKSLKLLRRSLEMDKEVSIVRDI 578

Query: 603  LQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIELVGTEEE 656
             + E+R+  DAGR  RPLLVV++         I+ L+     +  L+  G IE +  EEE
Sbjct: 579  REKEIRVQSDAGRPCRPLLVVKDNKLVITAEDIRKLKRGEIKWDNLVTSGFIEFLDVEEE 638

Query: 657  EDCCTAWGIKYLLKDIEDKK--PIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQ 714
            E    A   K L  +  +     + +THCE+  + +LG+    IPF +H+ + R  YQS 
Sbjct: 639  EMSMIAMNTKILADESRNSSDVSVSYTHCEIHPALILGICASTIPFPDHNQSPRNTYQS- 697

Query: 715  KHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNG 774
                QA+G   TN  +R+DTLS+ LFYPQ+PL  T                L   EL +G
Sbjct: 698  AMGKQAMGIYATNFLLRMDTLSNILFYPQKPLVTT-----------KSMEYLRFKELPSG 746

Query: 775  QNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAE-------VDNKEMQVKRR 827
            QNA+VA+  + GYNQEDS++MN+++++RG+FRS   R+Y  +       V+ +  +  R 
Sbjct: 747  QNALVAIACYSGYNQEDSIIMNQSAIDRGLFRSFFYRTYTDQESMSRPGVNEEFCKPSRG 806

Query: 828  SSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD--------------S 873
            +   M N           + LDDDG    G  +   D++IGK                  
Sbjct: 807  AVLRMKNLN--------YNKLDDDGLISPGTRVTGDDVLIGKITPILDPERSTKEAPVYV 858

Query: 874  GADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
              D S  ++ TE G+V  V+++ N DG  FS V +R  R P +GDKF+S H QKG +G  
Sbjct: 859  YKDSSTAMRRTETGIVDTVIVT-NKDGYKFSKVKVRSGRIPQMGDKFASRHAQKGTIGIT 917

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
              QE+ PFT +GIVPDI+INPHA PSR T G L+E  LGK ++A+     SG +  ATPF
Sbjct: 918  LRQEDMPFTSEGIVPDIIINPHAIPSRMTIGHLIECLLGK-VSAM-----SGEEGDATPF 971

Query: 994  ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
            +  +VD I+ +L   GF + G E +Y+G TG  +R+ +F GPT+YQRL HM +DK+  R 
Sbjct: 972  SGVTVDGISSRLKSYGFQQRGLEVMYNGMTGRKLRAQMFFGPTYYQRLKHMVDDKIHARA 1031

Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
             GP+  LTRQPV  R R GG++FGEMERDC+I+HGA+A L ERL  +SD+Y  ++C  C 
Sbjct: 1032 RGPLQILTRQPVEGRSRDGGLRFGEMERDCIISHGASAFLKERLMDVSDAYSCYVCDFCG 1091

Query: 1114 NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
             +A        GG KV    C+ C++  ++    +PY  KLL QEL  M I  +   E
Sbjct: 1092 LLAM-------GGSKVN--ECKGCNNTTNVSMVEIPYAFKLLIQELMGMNIAPRIRFE 1140


>gi|317155939|ref|XP_001825469.2| DNA-directed RNA polymerase II subunit RPB2 [Aspergillus oryzae
            RIB40]
          Length = 1221

 Score =  636 bits (1640), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 428/1243 (34%), Positives = 637/1243 (51%), Gaps = 137/1243 (11%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RY 83
            C     SFF+  GLVS Q++S++EFI + +Q+  +  G+  ++    P +        R 
Sbjct: 10   CWTVISSFFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTLDQTLPPDEDEVDPVVVRR 69

Query: 84   ASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDK 143
              ++FG V L +PS   G+G     M P+ ARL+N+TY+S + + +  ++  + R  S  
Sbjct: 70   YELKFGTVMLSRPSVTEGDGATTI-MLPQEARLRNLTYASPLYLGITKRIM-EGRERSVA 127

Query: 144  FKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFI 197
             +   E    ++  + ET  + IG++P+M+KS  C +K + +       +C +D GGYFI
Sbjct: 128  DRDDEEIEEDEDRKAQET--VFIGKVPIMLKSKYCILKDLSEQALYNWNECPYDSGGYFI 185

Query: 198  IKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE-----NKRNRLI--VRLVDMSKFED 249
            I G+EKV +AQE+     + V   +      Y +E      K +RL+  + L   +K + 
Sbjct: 186  INGSEKVLIAQERSAGNTVQVFKKAPPSPTPYVAEIRSAVEKGSRLLSQLSLKLFAKGDS 245

Query: 250  IKGG--EKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHD 306
             KGG    + S   ++ T+IPI ++F ALGV SD++I+N I +   D  +L +L   I +
Sbjct: 246  AKGGFGPTIRSTLPYVKTDIPIVVVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEE 305

Query: 307  ADNKCDEFRKGRNALKYVDKLIKGTTFPPGES----TEECMNTYLFPSLHGTK----QKA 358
                 D       AL ++ K     +    E       E M   L P +  ++    +KA
Sbjct: 306  GFVIQDR----EVALDFIAKRGSSQSSMNHERRVRYAREIMQKELLPHISQSEGSETRKA 361

Query: 359  RFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRD 418
             FLGYMV  LLQ   GRR  D+RD F  KRL+LAG LL    +V      + + + +QR 
Sbjct: 362  FFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRVLFTRVTRDLQRYVQRC 421

Query: 419  LYGDRTVRPIEYYLD----ASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQ 474
            +  +R     E YL+    AS LT GL  A +TG W    K     +G+   L R     
Sbjct: 422  VETNR-----EIYLNIGIKASTLTGGLKYALATGNWGEQKKAASAKAGVSQVLSRYTYAS 476

Query: 475  TLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SI 533
            TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   V+  + 
Sbjct: 477  TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVTVGTP 536

Query: 534  LEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELP 593
             EPI + +    ME L +          KVFV+G W+G+ +D    V+ ++  RRR  + 
Sbjct: 537  SEPIIDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVGIHRDPAHLVNTMQSLRRRNMIS 596

Query: 594  TQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------------IKSLEG------ 634
             +V + RD  + E +IF DAGR+ RPL V++N  K             I+ LE       
Sbjct: 597  HEVSLIRDIREREFKIFTDAGRVCRPLFVIDNDPKSENCGGLVLNKEHIRKLEQDKELPP 656

Query: 635  ---------KNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYL----------------- 668
                     + + +  L+  G++E V  EEEE    +   + L                 
Sbjct: 657  DLDPEDRRERYFGWDGLVRSGVVEYVDAEEEETIMISMTPEDLEISKQLQAGYALPEEEL 716

Query: 669  -----LKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGF 723
                 ++ I  +K   +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G 
Sbjct: 717  DPNKRVRSILSQKAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGV 775

Query: 724  PTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNV 783
              TN   R++T+++ L+YPQ+PL  T   +            L   EL  GQNAIVA+  
Sbjct: 776  FLTNFDQRMETMANILYYPQKPLATTRSME-----------FLRFRELPAGQNAIVAIAC 824

Query: 784  HLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIG 843
            + GYNQEDS+VMN++S++RG+FRS   R+Y        + V  R    M     I  + G
Sbjct: 825  YSGYNQEDSVVMNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERFEKPMRQ-DTIGMRKG 883

Query: 844  RVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH---------------SIKLKHTERGM 888
              D LD+DG    G  +   DI+IGK A    D                S  L+ TE G+
Sbjct: 884  TYDKLDEDGIIAPGVRVSGEDIIIGKTAPLAPDAEELGQRTKAHTKLDVSTPLRSTESGI 943

Query: 889  VQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVP 948
            V +V++S+++D   F  V +R  + P +GDKF+S HGQKG +G    QE+ PF+ +G+ P
Sbjct: 944  VDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFSREGVAP 1003

Query: 949  DIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRA 1008
            D+VINPHA PSR T   L+E  L K ++AL      G +  ATPF   +VD+++  L   
Sbjct: 1004 DLVINPHAIPSRMTIAHLIECQLSK-VSAL-----RGFEGDATPFTDVTVDSVSRLLREH 1057

Query: 1009 GFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADR 1068
            G+   G E +Y+G TG  + + +F+GPT+YQRL HM +DK+  R  GP   LTRQPV  R
Sbjct: 1058 GYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGR 1117

Query: 1069 KRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRK 1128
             R GG++FGEMERDC+IAHGA+A L ERLF +SD +++HIC  C  +  V        + 
Sbjct: 1118 ARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDCGLMTPV-------AKL 1170

Query: 1129 VRGPY-CRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
             +G + CR+C++   I + ++PY AKLL QEL SM I  +  T
Sbjct: 1171 KKGLFECRLCNNKHRISQVHIPYAAKLLFQELASMNIAARMFT 1213


>gi|303390954|ref|XP_003073707.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon
            intestinalis ATCC 50506]
 gi|303302855|gb|ADM12347.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon
            intestinalis ATCC 50506]
          Length = 1140

 Score =  635 bits (1638), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 417/1198 (34%), Positives = 625/1198 (52%), Gaps = 132/1198 (11%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            SFF + GLV  Q++S+++F+K  +Q+  D     IV+    P+   E + R  ++RFGQ+
Sbjct: 16   SFFEQKGLVRQQLDSFDQFVKTKMQEVIDESPAIIVQSA--PTAGIETQKR-ITVRFGQI 72

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             + KP  +  + G    +FP  AR++++TY+S + + V  +  ++  V  DK K  R   
Sbjct: 73   YVSKPPIYTESDGRTITVFPNEARIRDLTYASPLFIDVTKETISELGVV-DKHKYSR--- 128

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
                        +  G +PVM++S  C + G      ++ G+C +D GGYFI+ G+EKV 
Sbjct: 129  ------------VPFGSLPVMLRSSYCVLYGLSDKDLIDLGECPYDQGGYFIVNGSEKVI 176

Query: 206  VAQEQICLKRLWV---SNSMGWT-------VAYKSENKRNRLIVRLVDMSKFEDIKGGEK 255
            VAQE++    ++V   +    +T       V  KS    + L ++L           G  
Sbjct: 177  VAQERMASNTVYVFKKAQPATYTHYAEIRSVPEKSSRNPSTLSMKLCR-------SPGVI 229

Query: 256  VLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFR 315
             +S+  +  +IP+++L+ ALG  SDKEI++ I +  +D  +  +L  SI +     D+  
Sbjct: 230  RVSLPLVKQDIPLFVLYRALGFLSDKEIIDHILYEDDD-EMFELLKESIEEGMVVQDQ-- 286

Query: 316  KGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLHGTKQ-----KARFLGY 363
                AL Y+ K     + P G   E       + +   + P + GT++     KA F+GY
Sbjct: 287  --NVALDYIGK----RSAPVGTPQEKRIIIAKDLLAKEVLPHI-GTQEFCETKKAYFIGY 339

Query: 364  MVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDR 423
            +V+ LL    GR+  D+RD +  KR++L+G LL    +           + +Q+ +   R
Sbjct: 340  IVQRLLLVALGRKNPDDRDHYGKKRMDLSGPLLASLFRTLFKKLCADTTRHMQKCIENGR 399

Query: 424  TVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTR 483
                I   L ASI+T G   A +TG W    K  +  +G+   L R N + TL  LRR  
Sbjct: 400  EFN-IALGLKASIITQGFRYALATGNWGDQAKAMQTRAGVAQVLNRYNFVSTLSHLRRVN 458

Query: 484  QQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLF 542
              ++  GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  S   P+ E L 
Sbjct: 459  TPIEKEGKLAAPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMAYISVGSSSGPLVEFLE 518

Query: 543  NSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
              G+E L + ++  L    K+FV+G W+G+  D +  +  L+  RR  E+  +V I RD 
Sbjct: 519  ECGVESLEEISTPQLNAATKIFVNGIWVGIHSDPVYLIKSLKLLRRSLEMDKEVSIVRDI 578

Query: 603  LQSEVRIFMDAGRILRPLLVVENMG------KIKSLEGKNYTFQALLDHGIIELVGTEEE 656
             + E+RI  DAGR  RPLLVV+N         IK L+     +  L+  G IE +  EEE
Sbjct: 579  REKEIRIQSDAGRPCRPLLVVKNNELVITPEDIKRLKRGEIKWDNLISEGFIEFLDVEEE 638

Query: 657  EDCCTAWGIKYL--LKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQ 714
            E    A   K L   K   D K I +THCE+  + +LG+    IPF +H+ + R  YQS 
Sbjct: 639  EMSMIAMNTKALEESKKASDVK-ISYTHCEIHPALILGICASTIPFPDHNQSPRNTYQS- 696

Query: 715  KHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNG 774
                QA+G   TN  +R+DTLS+ LFYPQ+PL  T                L   EL +G
Sbjct: 697  AMGKQAMGIYATNFLLRMDTLSNILFYPQKPLVTT-----------KSMEYLRFKELPSG 745

Query: 775  QNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAE-------VDNKEMQVKRR 827
            QNA+VA+  + GYNQEDS++MN+++++RG+FRS   R+Y  +       V+ +  +  R 
Sbjct: 746  QNALVAIACYSGYNQEDSIIMNQSAIDRGLFRSFFYRTYTDQESMSRPGVNEEFCKPSRG 805

Query: 828  SSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD--------------S 873
            +   M N           + LD+DG    G  +   D++IGK                  
Sbjct: 806  TVLRMKNLN--------YNKLDEDGLISPGTRVTGDDVLIGKITPILDPERSTKEAPVYV 857

Query: 874  GADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
              D S  ++ TE G+V  V+++ N DG  FS + +R  R P +GDKF+S H QKG +G  
Sbjct: 858  YKDSSTAMRRTETGIVDTVIVT-NKDGYKFSKIKVRSGRIPQMGDKFASRHAQKGTIGIT 916

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
              QE+ PFT  GIVPDI+INPHA PSR T G L+E  LGK ++A+     SG +  ATPF
Sbjct: 917  LRQEDMPFTSDGIVPDIIINPHAIPSRMTIGHLIECLLGK-VSAM-----SGEEGDATPF 970

Query: 994  ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
            +  +V+ I+ +L   GF + G E +Y+G TG  +R+ +F GPT+YQRL HM +DK+  R 
Sbjct: 971  SDMTVNEISAKLKSYGFQQRGLEVMYNGMTGRKLRAQVFFGPTYYQRLKHMVDDKIHARA 1030

Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
             GP+  LTRQPV  R R GG++FGEMERDC+I+HGA+A L ERL  +SD+Y   +C  C 
Sbjct: 1031 RGPLQILTRQPVEGRSRDGGLRFGEMERDCIISHGASAFLKERLMDVSDAYSCFVCNFCG 1090

Query: 1114 NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
             +A        GG KV    C+ C++  ++    +PY  KLL QEL  M I  +   E
Sbjct: 1091 LLAM-------GGSKVNE--CKGCNNTTNVSMIEIPYAFKLLVQELMGMNIAPRIRFE 1139


>gi|302417061|ref|XP_003006362.1| DNA-directed RNA polymerase II subunit RPB2 [Verticillium albo-atrum
            VaMs.102]
 gi|261355778|gb|EEY18206.1| DNA-directed RNA polymerase II subunit RPB2 [Verticillium albo-atrum
            VaMs.102]
          Length = 1260

 Score =  635 bits (1637), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 429/1267 (33%), Positives = 636/1267 (50%), Gaps = 160/1267 (12%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGE-TIVEPGYDPSKKGEGEWRYA 84
            C     SFF+  GLVS Q++S++EF  + +Q+  D +   T+ +P            R  
Sbjct: 26   CWTVISSFFDSKGLVSQQVDSFDEFTTSTVQELIDEYSHITLDQPNPASDSDRAIALRRY 85

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSS----RMKVKVQFQVYTQ---- 136
             ++FG V + +PS    +G     + P   R +N+TY+S    R+  KV   V  Q    
Sbjct: 86   EVKFGTVMVSRPSITEADG-KVSTLLPYECRDRNLTYASPLYVRITKKVSIAVENQIPLN 144

Query: 137  -----------------KRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCW 179
                              R+  ++ ++G +    K+   D    I IGR+P+MVKS +C 
Sbjct: 145  ELDDEQHDEMGRTGEHPTRLEWEEEESGDDPGADKDKPEDMKDMIFIGRMPIMVKSKICH 204

Query: 180  MKGVEKGD------CDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAY 228
            +    + D      C +D GGYF+I G+EKV +AQE+     + V      +   +T   
Sbjct: 205  LSRESENDLFMLNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSPFSYTAEI 264

Query: 229  KSE-NKRNRLIVRL-VDMSKFEDIKGGEKVL---SVYFLSTEIPIWILFFALGVSSDKEI 283
            +S   K +RLI  L + +      KGG       ++ ++  +IPI I+F A G+ SD++I
Sbjct: 265  RSALEKGSRLISSLMLKLHSKSPAKGGVGQTIHCTLPYVKVDIPIGIVFRAFGIVSDEDI 324

Query: 284  VNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN-ALKYVDKLIKGTTFPPGE----S 338
            +N I +   D  +L +L   I +A        + RN AL ++ K          E    S
Sbjct: 325  LNHICYDRNDTQMLEMLRPCIEEA-----FIVQDRNVALDWIGKRGNSNHTMTREKRVRS 379

Query: 339  TEECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGE 394
             +E +     P +  ++    +KA FLGYM   LLQ   GRR  D+RD F  KRL+LAG 
Sbjct: 380  AKEILQKETLPHISQSEGSETRKAFFLGYMTHKLLQCALGRRDIDDRDHFGKKRLDLAGP 439

Query: 395  LLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPF 454
            LL +  +  +    + ++  L+R +  +R    +   +    L+NGL  + +TG W    
Sbjct: 440  LLAKLFRTIVRRMNQELSGHLKRCVESNRQFS-LTLGVKPQTLSNGLKYSLATGNWGDQK 498

Query: 455  KRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDG 514
            K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G
Sbjct: 499  KAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEG 558

Query: 515  ENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVC 573
            + CGLVKNL +   VS  +  EPI + +   GME L +          KVF++G W+GV 
Sbjct: 559  QACGLVKNLSLMCYVSVGTPAEPIIDYMIQRGMEVLEEYEPLRYPNATKVFLNGVWVGVH 618

Query: 574  KDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKSLE 633
            +D    V +++  RRR  +  +V + RD    E +IF DAGR++RP+ VVE        +
Sbjct: 619  QDPRVLVPDVQGTRRRNVISHEVSLVRDIRDREFKIFSDAGRVMRPVFVVEQSHHGAVPQ 678

Query: 634  GK------------------------NYTFQALLDHGIIELVGTEEEED---CCTAWGIK 666
            G                           T+Q L   GIIE +  EEEE    C T   ++
Sbjct: 679  GSLVLQKDLVNEMRDQQENPPDNPEDKITWQTLAHSGIIEYLDAEEEETSMICMTPEDLE 738

Query: 667  -YLLK--------DIED-----------KKPIKFTHCELDMSFLLGLSCGIIPFANHDHA 706
             Y L+        DI +           K    +THCE+  S +LG+   IIPF +H+ +
Sbjct: 739  LYRLRKAGHEVEEDISEGPNRRLRTKIAKTTHMYTHCEIHPSMILGICASIIPFPDHNQS 798

Query: 707  RRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHIL 766
             R  YQS     QA+GF  TN S R+DT+++ L+YPQ+PL  T   +            L
Sbjct: 799  PRNTYQS-AMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSME-----------FL 846

Query: 767  PRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSY----KAEVDNKEM 822
               EL  GQNA+VA+  + GYNQEDS++MN++S++RG+FRS   RSY    K    N   
Sbjct: 847  KFRELPAGQNAVVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDCEKRVGINLVE 906

Query: 823  QVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH----- 877
            Q ++   +D +       K G  D LDDDG    G  +   DI+IGK +    D+     
Sbjct: 907  QFEKPFRNDTLRL-----KHGTYDKLDDDGIVAPGVRVSGEDIIIGKTSPINPDNQELGQ 961

Query: 878  ----------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQK 927
                      S  L+ TE G++  V+L++N DG  +  V +R  + P +GDKF+S HGQK
Sbjct: 962  RTMQHVKRDASTPLRSTENGIIDSVILTTNQDGLRYVKVRVRTTKIPQIGDKFASRHGQK 1021

Query: 928  GVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLK 987
            G +G    QE+ PFT +GI PDI+INPHA PSR T   L+E  L K ++ L      G++
Sbjct: 1022 GTIGVTYRQEDMPFTSEGITPDIIINPHAIPSRMTIAHLIECLLSK-VSTL-----KGME 1075

Query: 988  RYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSED 1047
              ATPF   +VD++++ L   G+   G E +Y+G TG+ +R+ +F GPT+YQRL HM +D
Sbjct: 1076 GDATPFTDVTVDSVSQLLRDQGYQSRGFEVMYNGHTGKKLRAQVFFGPTYYQRLRHMVDD 1135

Query: 1048 KVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMH 1107
            K+  R  GPV  +TRQPV  R R GG++FGEMERDC+IAHGAA+ L ERLF +SD++++H
Sbjct: 1136 KIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFRVH 1195

Query: 1108 ICRKC---KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
            +C  C     +AN+ ++            CR C +   I + ++PY AKLL QEL SM I
Sbjct: 1196 VCEICGLMTPIANLSKQSF---------ECRPCKNKTKIAQIHIPYAAKLLFQELQSMNI 1246

Query: 1165 TLKFDTE 1171
              +  T+
Sbjct: 1247 AARMFTD 1253


>gi|429863599|gb|ELA38032.1| DNA-directed RNA polymerase ii subunit rpb2 [Colletotrichum
            gloeosporioides Nara gc5]
          Length = 1259

 Score =  635 bits (1637), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 433/1266 (34%), Positives = 648/1266 (51%), Gaps = 160/1266 (12%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGE-TIVEPGYDPSKKGEGEWRYA 84
            C     SFF   GLVS Q++S++EF  + +Q+  D + + T+ +P            R  
Sbjct: 25   CWTVISSFFESKGLVSQQVDSFDEFTSSTVQELIDEYSQITLDQPNPMSDSDKVIALRRY 84

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKV--QFQVYTQKRVTSD 142
             ++FG V + +PS    +G     + P   R +N+TY+S + VK+  +  +  +K +  +
Sbjct: 85   EVKFGTVMVSRPSITEADG-KVTTLLPYECRDRNLTYASPLYVKITKKVSIAVEKPIPLN 143

Query: 143  KF---------KTGRE-------------QYIQKEVLSDETTNII-IGRIPVMVKSDLCW 179
            +           TG                Y   +  SD+  ++I IGR+P+MVKS +C 
Sbjct: 144  ELDEEQQEELANTGEHPTKLEWEEEESGEDYGADKNKSDDMKDMIFIGRMPIMVKSKICH 203

Query: 180  MKGVEKGD------CDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAY 228
            +   ++ D      C +D GGYFII G+EKV +AQE+     + V      +   +T   
Sbjct: 204  LSSEQEDDLFMLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKAQPSPYSYTAEI 263

Query: 229  KSE-NKRNRLI--VRLVDMSKFEDIKGGEKVL---SVYFLSTEIPIWILFFALGVSSDKE 282
            +S   K +RLI  + L   SK +  KGG       S+ ++ +++PI I+F ALGV SD++
Sbjct: 264  RSALEKGSRLISSMMLKLYSKGDAAKGGYGQTIHCSLPYVKSDLPIAIVFRALGVVSDED 323

Query: 283  IVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGE---ST 339
            I+N I +   D  +L +L   I +A   C + R+   AL ++ K       P  +   + 
Sbjct: 324  ILNHICYDRNDSQMLEMLRPCIEEA--FCIQDREV--ALDFIGKRGSNHNIPREKRVRTA 379

Query: 340  EECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGEL 395
            ++ +     P +  ++    +KA FLGYMV  LLQ   GRR  D+RD F  KRL+LAG L
Sbjct: 380  KDILQKETLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDTDDRDHFGKKRLDLAGPL 439

Query: 396  LERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFK 455
            L +  +  +    + ++  L+R +  +R    +   +    L+NGL  + +TG W    K
Sbjct: 440  LAKLFRNIVRRMNQELSGHLKRCVESNRQFS-LTLGVKPQTLSNGLKYSLATGNWGDQKK 498

Query: 456  RTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGE 515
                 +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+
Sbjct: 499  AASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQ 558

Query: 516  NCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCK 574
             CGLVKNL +   VS  +  EPI + +   GME L +          KVF++G W+GV +
Sbjct: 559  ACGLVKNLSLMCYVSVGTPAEPIIDYMIQRGMEVLEEYEPLRYPNATKVFLNGVWVGVHQ 618

Query: 575  DSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENM-------- 626
            D    V +++  RRR  +  +V + RD    E +IF DAGR++RP+ VVE          
Sbjct: 619  DPRILVPDVQGTRRRNVISHEVSLVRDIRDREFKIFSDAGRVMRPVFVVEQSPTGIVPQG 678

Query: 627  ------GKIKSLEGKN----------YTFQALLDHGIIELVGTEEEED---CCTAWGIK- 666
                  G +  +  +            T++ L   G+IE +  EEEE    C T   ++ 
Sbjct: 679  SLVLQKGTVNEMRDQQENPPDNPNDKITWETLAHSGVIEYLDAEEEETAMICMTPEDLEI 738

Query: 667  YLLKD----IED----------KKPIK-----FTHCELDMSFLLGLSCGIIPFANHDHAR 707
            Y L+     IE+          K  I      +THCE+  S LLG+   IIPF +H+ + 
Sbjct: 739  YRLQKQGQVIEEDNADDRNRRLKTKINPTTHMYTHCEIHPSMLLGICASIIPFPDHNQSP 798

Query: 708  RVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILP 767
            R  YQS     QA+GF  TN S R+DT+++ L+YPQ+PL  T   +            L 
Sbjct: 799  RNTYQS-AMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSME-----------FLK 846

Query: 768  RPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSY-----KAEVDNKEM 822
              EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   RSY     +  ++  E 
Sbjct: 847  FRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDCEKRVGINLVEQ 906

Query: 823  QVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH----- 877
              K   SD       ++ K G  D LDDDG    G  +   DI+IGK +    D+     
Sbjct: 907  FEKPFRSD------TLRLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTSPINPDNQELGQ 960

Query: 878  ----------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQK 927
                      S  L+ TE G+V  V++++N DG  +  V +R  + P +GDKF+S HGQK
Sbjct: 961  KTTQHVKRDASTPLRSTENGIVDSVIITTNQDGLRYVKVRVRTTKIPQIGDKFASRHGQK 1020

Query: 928  GVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLK 987
            G +G    QE+ PFT +GI PDI+INPHA PSR T   L+E  L K ++ L      G++
Sbjct: 1021 GTIGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLLSK-VSTL-----KGME 1074

Query: 988  RYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSED 1047
              ATPF   +VD++++ L   G+   G E +Y G TG  +R+ +F GPT+YQRL HM +D
Sbjct: 1075 GDATPFTDVTVDSVSQLLRDQGYQSRGFEIMYQGHTGRKLRAQVFFGPTYYQRLRHMVDD 1134

Query: 1048 KVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMH 1107
            K+  R  GPV  +TRQPV  R R GG++FGEMERDC+IAHGAA+ L ERLF +SD++++H
Sbjct: 1135 KIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFRVH 1194

Query: 1108 ICRKC---KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
            +C  C     +AN+ ++            CR C +   I + ++PY AKLL QEL SM I
Sbjct: 1195 VCEICGLMTPIANLSKQSFE---------CRPCKNKTKIAQIHIPYAAKLLFQELQSMNI 1245

Query: 1165 TLKFDT 1170
              +  T
Sbjct: 1246 AARMFT 1251


>gi|409193805|gb|AFV31136.1| RPB2 [Amoeboaphelidium protococcarum]
          Length = 1174

 Score =  634 bits (1636), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 424/1205 (35%), Positives = 629/1205 (52%), Gaps = 111/1205 (9%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYAS 85
            C +   SFF E GLV  Q++S++ FI+N +Q+  D   + +++     S +     R   
Sbjct: 8    CWQVISSFFEEKGLVRQQLDSFDSFIQNTMQELVDEHSQLVLQSNSQFSGQEGDVTRRHV 67

Query: 86   MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQ--KRVTSDK 143
            ++FGQV L KP       G    + P  ARL+N+TY++ + + ++   Y        +  
Sbjct: 68   IQFGQVYLSKP-LHTEKDGMSTPLLPSMARLRNLTYAAPLYIDIKKTTYVADPNHELNQG 126

Query: 144  FKTGREQYIQKEVLSDETT--NIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGY 195
                 E ++++E   DE     I +G++P+MVKS  C +           G+C +D GGY
Sbjct: 127  IVNVNEMHLEQE---DEVMYERIFLGKVPLMVKSSYCALSSSSNHELMGMGECPYDQGGY 183

Query: 196  FIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKR---NRLIVRLVDMSKF 247
            FII G+EKV +AQE++   +++V      +   +T   +S  +R   N   V +  +S+ 
Sbjct: 184  FIINGSEKVLIAQERMANNQVYVFAKSPPSPYSYTAEIRSAVERGGKNASAVFVKMLSRL 243

Query: 248  ED--IKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIH 305
             D    G      + ++  +IPI I+F ALGV +DK+I++ I +  ED  +L++L   I 
Sbjct: 244  ADKGTSGQYIRCQIPYIKQDIPIGIVFRALGVVADKDILSHIVYDPEDTQMLDLLKPCIE 303

Query: 306  DADNKCDEFRKGRNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSL----HGTKQ 356
            +A    D+      AL ++ K  +GTT             E +     P +    H   +
Sbjct: 304  EAFTIQDQ----NVALDFIGK--RGTTVGVRREQRIKYAREILQKEFLPHVGVEEHSESK 357

Query: 357  KARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQ 416
            KA F GYM+  LLQ    RR+ D+RD F  KRL+LAG LL    ++        + K LQ
Sbjct: 358  KAFFFGYMINRLLQCALERRELDDRDHFAKKRLDLAGPLLGGLFRMLFRKLTTDVGKYLQ 417

Query: 417  RDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTL 476
            + +   R    +   +   I+T+GL  + +TG W    K     +G+   L R   + TL
Sbjct: 418  KCINEGREFN-LPLAVKHQIITSGLKYSIATGNWGDQSKAMSTRAGVSQVLNRYTYISTL 476

Query: 477  VDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILE 535
              LRR    +   GK+   R  H S +G +C   +P+G+ CGLVKNL +   VS  S   
Sbjct: 477  SHLRRCNAPIGREGKLAKPRQLHNSQFGMVCPAESPEGQACGLVKNLALMAYVSVGSPTS 536

Query: 536  PIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQ 595
            P+ E L    ME LAD     +GG  KVFV+G W+G+ +D       L++ RR  +L  +
Sbjct: 537  PVLEFLEEWAMENLADVNPSFIGGATKVFVNGVWVGIHRDPDMLAENLKQLRRSLDLSQE 596

Query: 596  VEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIE 649
            V I RD    E+R++ D+GR+ RPL +V++         ++ LE K   +  LL  G++E
Sbjct: 597  VSIVRDYRDRELRLYTDSGRVCRPLFIVKDGALVLTKNHVRLLEKKEIGWNQLLADGVVE 656

Query: 650  LVGTEEEEDCCTAWGIKYLLKD---IEDKKP--IKFTHCELDMSFLLGLSCGIIPFANHD 704
             + TEEEE    +   + L++      + +P   K+THCEL  S + G+S   IPF +H+
Sbjct: 657  YIDTEEEETALISMTPEDLVESKMRAMNGQPDLKKWTHCELHPSLMFGVSASTIPFPDHN 716

Query: 705  HARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNH 764
             + R  Y S   S Q IG   TN   R+DTLS  LFYPQ+PL  T   + L      H  
Sbjct: 717  QSPRNCY-SASQSKQTIGVYLTNFQQRMDTLSSVLFYPQKPLVTTRAMEHL------HYR 769

Query: 765  ILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDN----- 819
             LP      GQNAIVA+  H GYNQEDS++M++++++RG+FRS   R+Y  +V       
Sbjct: 770  ELP-----AGQNAIVAIACHGGYNQEDSILMSQSAIDRGLFRSFFFRTYTEQVKKVGALE 824

Query: 820  -KEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA----DSG 874
             +E++ K    D ++  G         + LD DG    G  +   DI++GK      DS 
Sbjct: 825  LEEIE-KPNPRDTLIRRGN------NYEKLDADGLVPPGTRVSGDDILVGKTVPIPVDSE 877

Query: 875  A-----------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSM 923
                        D S  ++ TE G+V +V+L++ND         +R V+ P +GDK  S 
Sbjct: 878  ELGQRTARHVKRDSSATMRSTEYGVVDQVLLTTNDLDLKMCKTRVRSVKIPQVGDKHCSR 937

Query: 924  HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGIC 983
            HGQKGVLG L  QE+ P+T  GIVPD++INPHA PSR T G L+E  L K ++AL     
Sbjct: 938  HGQKGVLGMLYRQEDLPYTADGIVPDVIINPHAIPSRMTIGHLIECLLSK-VSAL----- 991

Query: 984  SGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIH 1043
            +G +   TPF   +V+ I+  L + G+ K G E LY+G+TG+ + + IFIGPTFYQRL H
Sbjct: 992  TGDEGDGTPFTDVTVEDISNALAKCGYQKRGFEVLYNGQTGQKLAANIFIGPTFYQRLKH 1051

Query: 1044 MSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDS 1103
            M +DK+  R  GPV  LTRQPV  R R GG++FGEME D ++AHGAA  L ERLF +SD+
Sbjct: 1052 MVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMEHDVIVAHGAAMFLKERLFDVSDA 1111

Query: 1104 YQMHICRKC--KNVANVIQRVVGGGRKVRGPY-CRICDSGDDIVKANVPYGAKLLCQELF 1160
            +++H+C  C    +AN+           +  Y CRIC +   I + ++PY  KLL QEL 
Sbjct: 1112 FRVHVCDLCGLMCIANL----------SKNSYECRICHNKTQISQIHLPYATKLLFQELM 1161

Query: 1161 SMGIT 1165
            SM I 
Sbjct: 1162 SMNIA 1166


>gi|378755195|gb|EHY65222.1| DNA-directed RNA polymerase II subunit RPB2 [Nematocida sp. 1 ERTm2]
          Length = 1137

 Score =  634 bits (1636), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 418/1194 (35%), Positives = 618/1194 (51%), Gaps = 118/1194 (9%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYAS 85
            C K   +FF + GLV  Q++S+NEFI++ +Q+  D     IV   + P+ + E   +Y +
Sbjct: 9    CWKVVSAFFKDKGLVRQQLDSFNEFIQSTMQEVVDE-NSKIVLMAHSPTGEEEKARKY-T 66

Query: 86   MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
            + F Q+ + KP       G    MFP  AR++++TYS+ + +              D  K
Sbjct: 67   IEFKQIYVSKPPTITEPDGRTSPMFPNDARVRSLTYSASLYI--------------DIVK 112

Query: 146  TGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIK 199
            T  E    +EV S     + IG IP+M++S  C     +  D      C +D GGYFI+ 
Sbjct: 113  T--EHIGDEEVESRTYKRMPIGSIPIMLRSLYCVYSNTDDKDMNRIEECTYDQGGYFIVN 170

Query: 200  GAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSENKR---------NRLIVRLVDMSKFED 249
            G+EKV +A E++    +++   +      Y +E +          + L +RLV  S    
Sbjct: 171  GSEKVLIAHERMASNLVYIFKKAPPSPYLYTAEMRSVPDHGLRLPSSLTIRLVARSSDNA 230

Query: 250  IKGGEKVLSVYFLST-------EIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFA 302
              GG      YFL         ++P+ ++F ALG  SDKEI+  I +   D  +L++L  
Sbjct: 231  SGGG------YFLRALLPHAKQDVPVVVIFRALGFVSDKEILEHICYDFSDTEMLSMLRP 284

Query: 303  SIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTY---LFPSLHGTKQ--- 356
            SI +A    D+      AL Y+ K +    F   +  +   + +     P + GTK+   
Sbjct: 285  SIEEAFVIQDQ----GVALDYIGKRVAPAGFSKEKRIKFAKDLFQREFLPHV-GTKEFCE 339

Query: 357  --KARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKA 414
              KA  LGY +  LL    GRR  ++RD +  KRL+LAG L+    ++        +AK 
Sbjct: 340  TKKAYLLGYTINKLLMVALGRRSEEDRDHYGRKRLDLAGPLMAGLFRMLFKKMSNELAKY 399

Query: 415  LQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQ 474
            +QR + G++ +  I   L  S LTNGL  + +TG W    K  +  +G+   L R N + 
Sbjct: 400  MQRCIDGNKDLNLI-VGLRTSTLTNGLRYSLATGNWGEQSKSMQARAGVAQVLNRYNYIS 458

Query: 475  TLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSIL 534
            TL  LRR    +   GK+   R  H SHWG +C   TP+G+ CGLVKN  +   +S    
Sbjct: 459  TLSHLRRVNTPIGRDGKLAKPRQLHSSHWGMVCPAETPEGQACGLVKNFALMSHISVGSN 518

Query: 535  EPIFEQLFNSGMEKLADDAS-YSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELP 593
              I  +L      +  ++ S  ++ G  KV V+G W+GV +     +  L+  RR  EL 
Sbjct: 519  SSIVVELLEECGLEGLEEVSPTAIAGATKVLVNGSWVGVHRSPDDLIGTLKYLRRSGELS 578

Query: 594  TQVEIKRDELQSEVRIFMDAGRILRPLLVVEN-MGKIKSLEGKN----YTFQALLDHGII 648
            +++ I RD  + E+RI  D GR  RPL +VE  + +I+     N    +T+  L+  G +
Sbjct: 579  SEIGIVRDLREKEIRINTDGGRACRPLFIVEKGVLRIEHFLEANRHRAFTWDELMADGCV 638

Query: 649  ELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARR 708
            E +  EEEE    A        D+ + + I +THCE+  + +LG+   ++PF +H+ + R
Sbjct: 639  EFLDVEEEETAMIAVKTS----DLRNTE-IMYTHCEIQPATMLGVCASVVPFPDHNQSPR 693

Query: 709  VLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPR 768
              YQS     QA+G   TN  +R+D+LS+ L YPQ+PL  T              + L  
Sbjct: 694  NTYQS-AMGKQAMGMYATNFLMRMDSLSNVLCYPQKPLVITQ-----------SMNFLQF 741

Query: 769  PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSY-------KAEVDNKE 821
             EL +GQNA+VA+  + GYNQEDS+VMNR +++RG+FRS   R+Y       K E     
Sbjct: 742  RELPSGQNAMVAIACYSGYNQEDSVVMNRGAVDRGLFRSFFYRTYSDMESRTKPEEQECF 801

Query: 822  MQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---DSGADHS 878
            M+  RRS   M N           + LD DG    G  +   D++IGK     D   D S
Sbjct: 802  MKPDRRSVQRMKN--------ANYEKLDIDGLVPPGTRVSGEDVLIGKAVSTPDGYKDAS 853

Query: 879  IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQEN 938
              ++ TE G+V +V+L++ D G  ++ + +R  R+P +GDKF+S HGQKG +G + S E+
Sbjct: 854  TTMRGTESGVVDRVILTTKD-GYRYARIRVRSARTPQMGDKFASRHGQKGTIGIMLSPED 912

Query: 939  FPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSV 998
             PFT  GI PDI+INPHA PSR T G L+E  LGK     GK      +  ATPF   SV
Sbjct: 913  MPFTADGITPDIIINPHAIPSRMTIGHLVECLLGKVSCMTGK------EGDATPFTGLSV 966

Query: 999  DAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVH 1058
            + I+E+L + G+ K G E +Y G TG  +RS IFIGPT+YQRL HM  DK+  R  GPV 
Sbjct: 967  EEISEELQKHGYQKRGFEVMYSGFTGRKMRSQIFIGPTYYQRLKHMVADKIHARAHGPVQ 1026

Query: 1059 PLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANV 1118
             LTRQPV  R R GG++FGEMERDC+I+HGAA  L ERL  +SD +++ IC  C      
Sbjct: 1027 ILTRQPVEGRSRDGGLRFGEMERDCMISHGAAMFLKERLCDVSDKFEVFICNDCG----- 1081

Query: 1119 IQRVVGGGRKVRGPY-CRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
               +   G K RG Y C++C +  ++    +PY  KLL QE+ +M I+++   E
Sbjct: 1082 ---LFCAGNKDRGLYLCQLCGTRTNVSMVYMPYAFKLLVQEMMTMCISVQMRLE 1132


>gi|255955085|ref|XP_002568295.1| Pc21g12680 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590006|emb|CAP96165.1| Pc21g12680 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1255

 Score =  634 bits (1636), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 425/1261 (33%), Positives = 641/1261 (50%), Gaps = 152/1261 (12%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGE---WR 82
            C     SFF+  GLVS Q++S++EFI + +Q+  +  G+ +++    PS+  E E    R
Sbjct: 25   CWTVISSFFDSKGLVSQQLDSFDEFISSTMQELVEEQGQVVLDQTLPPSED-EIEPIVVR 83

Query: 83   YASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQK----R 138
               ++FG V L +PS   G+G     M P+ ARL+N+TY+S + + V  ++   +    +
Sbjct: 84   RYELKFGTVMLSRPSVTEGDGATTI-MLPQEARLRNLTYASPLYLGVTKKIMEGREKIGK 142

Query: 139  VTSDKFKTGRE-------------QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK 185
             T D    G               + + +E + +ET  + IG++P+M+KS  C +K + +
Sbjct: 143  PTDDDDNEGESDPKTQGTYLEWETKQLPQEQMKEET--VFIGKMPIMLKSKYCILKDLNE 200

Query: 186  G------DCDFDHGGYFIIKGAEKVFVAQEQIC------LKRLWVSNSMGWTVAYKSENK 233
                   +C +D GGYF+I G+EKV +AQE+         K+   S +        +  K
Sbjct: 201  SSLYAWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYIAEIRSAVEK 260

Query: 234  RNRLIVRLV--DMSKFEDIKG--GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLID 288
             +R++  L     +K +  KG  G  + S   ++  +IPI ++F ALGV SD++I+N I 
Sbjct: 261  GSRMLSSLTLKLFAKGDSAKGGFGPTIRSTLPYVKADIPIVVVFRALGVVSDEDILNHIC 320

Query: 289  FTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES------TEEC 342
            +   D  +L +L   I +     D       AL ++ K  +G++              + 
Sbjct: 321  YDRNDTPMLEMLKPCIEEGFVIQDR----EVALDFIAK--RGSSQSNLNHDRRVRYARDI 374

Query: 343  MNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLER 398
            M   L P +   +    +KA FLGYMV  LLQ   GRR  D+RD F  KRL+LAG LL  
Sbjct: 375  MQKELLPHISQNEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLAS 434

Query: 399  ELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTE 458
              +       K + + +QR +  +R +  +   + AS LT GL  A +TG W    K   
Sbjct: 435  LFRTLFTRVTKDLQRYVQRCVETNREIY-LNIGIKASTLTGGLKYALATGNWGEQKKAAS 493

Query: 459  RISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCG 518
              +G+   L R     +L  LRRT   +   GK+   R  H +HWG +C   TP+G+ CG
Sbjct: 494  AKAGVSQVLSRYTFASSLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACG 553

Query: 519  LVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSL 577
            LVKNL +   ++  +  EPI + +    ME L +          KVFV+G W+G+ +D  
Sbjct: 554  LVKNLALMCYITVGTPAEPIVDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVGIHRDPS 613

Query: 578  SFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK--------- 628
              V+ ++  RRR  +  +V + RD  + E +IF D GR+ RPL V++N  K         
Sbjct: 614  HLVTTMQNLRRRNMISHEVSLIRDIREREFKIFTDTGRVCRPLFVIDNDPKSENSGGLVL 673

Query: 629  ----IKSLEG---------------KNYTFQALLDHGIIELVGTEEEEDCCTAWGIK--- 666
                I+ LE                + + +  L+  G +E V  EEEE        +   
Sbjct: 674  NKEHIRKLEADKDLPTDMAPEERREQYFGWDGLVRSGAVEYVDAEEEETIMIVMTPEDLE 733

Query: 667  --------YLLKDIEDKKPIK------------FTHCELDMSFLLGLSCGIIPFANHDHA 706
                    Y L D E   P K            +THCE+  S +LG+   IIPF +H+ +
Sbjct: 734  ISRQLQAGYALPDDETSDPNKRVRSILSQRAHTWTHCEIHPSMILGVCASIIPFPDHNQS 793

Query: 707  RRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHIL 766
             R  YQS     QA+G   TN S R++T+++ L+YPQ+PL  T   +            L
Sbjct: 794  PRNTYQS-AMGKQAMGVFLTNFSQRMETMANILYYPQKPLATTRSME-----------FL 841

Query: 767  PRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKR 826
               EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y        +QV  
Sbjct: 842  RFRELPAGQNAIVAIATYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYADTEKMVGLQVVE 901

Query: 827  RSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH--------- 877
            R    M     +  + G  D LD+DG    G  +   DI+IGK A   AD          
Sbjct: 902  RFEKPM-RLDTLGMRKGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPLAADAEELGQRTKA 960

Query: 878  ------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLG 931
                  S  L+ TE G+V +V++S+ +D   F  V +R  + P +GDKF+S HGQKG +G
Sbjct: 961  HTKIDVSTPLRSTENGIVDQVLISTGNDDLKFVKVRMRTTKVPQIGDKFASRHGQKGTIG 1020

Query: 932  FLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYAT 991
                QE+ PFT +G+VPD++INPHA PSR T   L+E  L K ++AL      G +  AT
Sbjct: 1021 ITYRQEDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLSK-VSAL-----RGFEGDAT 1074

Query: 992  PFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKF 1051
            PF   +VD+++  L   G+   G E +++G TG  + + +F+GPT+YQRL HM +DK+  
Sbjct: 1075 PFTDVTVDSVSRLLREHGYQSRGFEVMFNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHA 1134

Query: 1052 RNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRK 1111
            R  GP   LTRQPV  R R GG++FGEMERDC+IAHGA++ L ERLF +SD +++HIC  
Sbjct: 1135 RARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASSFLKERLFDVSDPFRVHICDD 1194

Query: 1112 CKNVANVIQRVVGGGRKVRGPY-CRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
            C  +  V        +  +G + CR+C++   I + ++PY AKLL QEL SM I  +  T
Sbjct: 1195 CGLMTPV-------AKLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELASMNIAARMFT 1247

Query: 1171 E 1171
            +
Sbjct: 1248 D 1248


>gi|172211|gb|AAA68096.1| RNA polymerase II 48 kd subunit [Saccharomyces cerevisiae]
          Length = 1224

 Score =  634 bits (1636), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 431/1258 (34%), Positives = 648/1258 (51%), Gaps = 138/1258 (10%)

Query: 2    DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVS-FFNEYGLVSHQINSYNEFIKNGLQKAFD 60
            D D  GF D ++     + +       A +S FF E GLVS Q++S+N+F+   LQ    
Sbjct: 12   DEDPYGFEDESAPITAEDSW-------AVISAFFREKGLVSQQLDSFNQFVDYTLQDIIC 64

Query: 61   SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
                 I+E     + + +   R   + FG++ + KP     +G   H ++P+ ARL+N+T
Sbjct: 65   EDSTLILEQLAQHTTESDNISRKYEISFGKIYVTKPMVNESDGV-THALYPQEARLRNLT 123

Query: 121  YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSD-ETTNIIIGRIPVMVKSDLCW 179
            YSS + V V+ + Y    V   + K    + I +E   D E+  + IGR+P+M++S  C+
Sbjct: 124  YSSGLFVDVKKRTYEAIDVPGRELKY---ELIAEESEDDSESGKVFIGRLPIMLRSKNCY 180

Query: 180  MKGVEKGD------CDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE- 231
            +    + D      C FD GGYFII G+EKV +AQE+     + V   +    +++ +E 
Sbjct: 181  LSEATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEI 240

Query: 232  ----NKRNRLIVRL-VDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNL 286
                 K +R I  L V +   E         ++ ++  +IPI I+F ALG+  D EI+  
Sbjct: 241  RSALEKGSRFISTLQVKLYGREGSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEH 300

Query: 287  IDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES-----TEE 341
            I +   D  +L +L   + D     D       AL ++ +  +GT     +       ++
Sbjct: 301  ICYDVNDWQMLEMLKPCVEDGFVIQDR----ETALDFIGR--RGTALGIKKEKRIQYAKD 354

Query: 342  CMNTYLFP---SLHG-TKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLE 397
             +     P    L G   +KA FLGYM+  LL     R+  D+RD F  KRL+LAG LL 
Sbjct: 355  ILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLL- 413

Query: 398  RELKVHIAHARKRMAKALQRDL--YGDRTVRP-----IEYYLDASILTNGLSRAFSTGAW 450
                   A   K + K L +D+  Y  RTV       ++  ++A  +T+GL  A +TG W
Sbjct: 414  -------AQLFKTLFKKLTKDIFRYMQRTVEEAHDFNMKLAINAKTITSGLKYALATGNW 466

Query: 451  SHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLS 510
                K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   
Sbjct: 467  GEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAE 526

Query: 511  TPDGENCGLVKNLGVTGLVSTSI-LEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDW 569
            TP+G+ CGLVKNL +   +S      PI   L   GME L D   +      +VFV+G W
Sbjct: 527  TPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVW 586

Query: 570  IGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---- 625
             GV ++    +  LR  RR+ ++  +V + RD  + E++IF DAGR+ RPL +VE+    
Sbjct: 587  HGVHRNPARLMETLRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESL 646

Query: 626  -----------MGKIKSLEGKN----------YTFQALLDHGIIELVGTEEEEDCCTAWG 664
                       + K+ + E ++          YT+ +LL+ G++E +  EEEE    A  
Sbjct: 647  GHKELKVRKGHIAKLMATEYQDIEGGFEDVEEYTWSSLLNEGLVEYIDAEEEESILIAMQ 706

Query: 665  IKYLLK---------DIEDKKPIK-------FTHCELDMSFLLGLSCGIIPFANHDHARR 708
             + L           D++  K I+       FTHCE+  S +LG++  IIPF +H+ + R
Sbjct: 707  PEDLEPAEANEENDLDVDPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPR 766

Query: 709  VLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPR 768
              YQS     QA+G   TN ++R+DT+++ L+YPQ+PL  T   +            L  
Sbjct: 767  NTYQSAM-GKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAME-----------YLKF 814

Query: 769  PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRS 828
             EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   RSY  +     M +   +
Sbjct: 815  RELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITE-T 873

Query: 829  SDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---------------DS 873
             +       ++ K G  D LDDDG    G  +   D++IGK                  S
Sbjct: 874  FEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPISPDEEELGQRTAYHS 933

Query: 874  GADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
              D S  L+ TE G+V +V++++N DG  F  V +R  + P +GDKF+S HGQKG +G  
Sbjct: 934  KRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGIT 993

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
              +E+ PFT +  VPD++INPHA PSR T   L+E  L K +AAL     SG +  A+PF
Sbjct: 994  YRREDMPFTRRRYVPDLIINPHAIPSRMTVAHLIECLLSK-VAAL-----SGNEGDASPF 1047

Query: 994  ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
               +V+ I++ L   G+   G E +Y+G TG+ + + IF GPT+YQRL HM +DK+  R 
Sbjct: 1048 TDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARA 1107

Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
             GP+  LTRQPV  R R GG++FGEMERDC+IAHGAA+ L ERL   SD++++HIC  C 
Sbjct: 1108 RGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGIC- 1166

Query: 1114 NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
             +  VI ++     +     C+ CD+  DI + ++PY AKLL QEL +M IT +  T+
Sbjct: 1167 GLMTVIAKLNHNQFE-----CKGCDNKIDIYQIHIPYAAKLLFQELMAMNITPRLYTD 1219


>gi|321470077|gb|EFX81055.1| hypothetical protein DAPPUDRAFT_102782 [Daphnia pulex]
          Length = 1174

 Score =  634 bits (1636), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 428/1245 (34%), Positives = 638/1245 (51%), Gaps = 154/1245 (12%)

Query: 2    DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-D 60
            D D++   D     ++  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   D
Sbjct: 3    DQDEDPIEDEDGE-EISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 61   SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
            S    +       S + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+T
Sbjct: 62   SPAIDLQAEAQHSSGEVENPPRYV-LKFEQIYLSKPTHWEKDGAPTA-MMPNEARLRNLT 119

Query: 121  YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
            YS+ + V +   V+          K G EQ      +  +     IG+IP+M++S  C +
Sbjct: 120  YSAPLYVDITKTVH----------KEGEEQ------VETQHQKTFIGKIPIMLRSTYCLL 163

Query: 181  KGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR 234
             G+      E  +C  D GGYFII G+EKV +AQE++    ++V +      AYK+E + 
Sbjct: 164  NGMNDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKFAYKTEIRS 223

Query: 235  ---------NRLIVRLVDMSKFEDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDK 281
                     + L V ++     + IK    G++++++  ++  EIPI I+F ALG  +D+
Sbjct: 224  CLEHSSRPTSTLYVNMLARGG-QGIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADR 282

Query: 282  EIVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKL 327
            +I+  I +  ED  ++ ++  S+ +A      N    F   R A         +KY  ++
Sbjct: 283  DILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKEKRIKYAREI 342

Query: 328  IKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNK 387
            ++    P    ++ C             +KA FLGYMV  LL A  GRR+ D+RD + NK
Sbjct: 343  LQKEMLPHVGVSDFC-----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNK 391

Query: 388  RLELAGELLERELKVHIAHARKRMAKALQRD--LYGDRTVR-----PIEYYLDASILTNG 440
            RL+LAG L+        A   + + K L ++  +Y  + +       +E  +   I+T+G
Sbjct: 392  RLDLAGPLM--------AFLFRALFKTLMKEVRMYAQKFIDRGKDFNLELAIKTRIITDG 443

Query: 441  LSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHP 500
            L  + +TG W    K  +  +G+   L R     TL  LRR    +   GK+   R  H 
Sbjct: 444  LRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHN 503

Query: 501  SHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGG 559
            + WG +C   TP+G   GLVKNL +   +S  S   PI E L    ME L + A  ++  
Sbjct: 504  TLWGMVCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIAD 563

Query: 560  KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILR 618
              K+FV+G W+G+ +D    ++ LR+ RR+ ++  ++V + RD    E+RI+ DAGRI R
Sbjct: 564  ATKIFVNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMVRDIQDREIRIYTDAGRICR 623

Query: 619  PLLVVEN---------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLL 669
            PLL+VEN         +  +K  E  N+++Q L+  G++E + T EEE    A   + L 
Sbjct: 624  PLLIVENCKLLLKKRHVDMLKQREYINFSWQELVATGVVEYIDTLEEETAMIAMSPEDL- 682

Query: 670  KDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPS 729
            +  +D     +THCE+  + +LG+   IIPF +H+ + R  YQS     QA+G   TN  
Sbjct: 683  RQGKDAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFH 741

Query: 730  IRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQ 789
            +R+DTL+H L YPQ+PL  T   +            L   EL  G N++VA+  + GYNQ
Sbjct: 742  VRMDTLAHVLQYPQKPLVTTRSME-----------YLRFRELPAGINSVVAILSYTGYNQ 790

Query: 790  EDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK--------IQSK 841
            EDS++MN +++ERG FRS   RSYK        Q  +RS+D    F K        +++ 
Sbjct: 791  EDSVIMNASAVERGFFRSVFFRSYKD-------QESKRSADQEETFEKPFRDHCQGMRNA 843

Query: 842  IGRVDSLDDDGFPFIGANLQSGDIVIGKYAD---------------SGADHSIKLKHTER 886
            I   D LDDDG    G  +   D+VIGK                  S  D S  L+H+E 
Sbjct: 844  I--YDKLDDDGIIAPGLRVSGDDVVIGKTITLPENDDDLESTTKKFSKRDASTFLRHSET 901

Query: 887  GMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGI 946
            G+V +V+L+ N +G  F  + +R VR P +GDKF+S HGQKG  G    QE+ PFT +G+
Sbjct: 902  GIVDQVMLTLNAEGNKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGL 961

Query: 947  VPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQL 1005
             PDI+INPHA PSR T G L+E   GK   +  KG        ATPF    +V  I+  L
Sbjct: 962  TPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGEIGD----ATPFNDAVNVQKISNLL 1015

Query: 1006 HRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPV 1065
               G+   G E LY+G TG  + + +F+GPT+YQRL HM +DK+  R  GPV  L RQP+
Sbjct: 1016 QEYGYHLRGNEVLYNGHTGRKLNAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPM 1075

Query: 1066 ADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVV 1123
              R R GG++FGEMERDC IAHGAA  L ERLF +SD Y++H+C  C    VAN+     
Sbjct: 1076 EGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNLCGIIAVANLRNNTF 1135

Query: 1124 GGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
                      C+ C +   I +  +PY AKLL QEL SM I  + 
Sbjct: 1136 E---------CKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRL 1171


>gi|301101902|ref|XP_002900039.1| DNA-directed RNA polymerase II 135 kDa polypeptide [Phytophthora
            infestans T30-4]
 gi|262102614|gb|EEY60666.1| DNA-directed RNA polymerase II 135 kDa polypeptide [Phytophthora
            infestans T30-4]
          Length = 1202

 Score =  634 bits (1635), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 409/1199 (34%), Positives = 617/1199 (51%), Gaps = 106/1199 (8%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP--GYDPSKKGEGEWRYASMRFG 89
            S+F E GLV  Q++S++EFI+N +Q+  D      + P   Y P +         ++ FG
Sbjct: 38   SYFEEKGLVRQQLDSFDEFIQNTMQELVDDSRSIRINPEAQYAPGQAKTNTDTIYNISFG 97

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
            Q+ L KP+    +G     MFP  ARL+N+TYS+ + V V  Q Y Q   +        E
Sbjct: 98   QIYLSKPTMTEADGSTS-VMFPHEARLRNLTYSAPLYVDVVCQKY-QAPSSGPANLEDME 155

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
             Y Q E     T    IG +P+M++S  C +         E  +C +D GGYFII G+EK
Sbjct: 156  PYDQVE-----TPKEFIGMVPIMLRSQYCVLTHKTDKELTELNECVYDQGGYFIINGSEK 210

Query: 204  VFVAQEQICLKRLW-----VSNSMGWTVAYKSENKR-----NRLIVRLVDMSKFEDIKGG 253
            V +AQE++    ++      ++   W    +S  +      + + V++      +    G
Sbjct: 211  VLIAQERMSNNHVYCFRKNAASKYSWVCETRSHVEHGVRPTSTMYVQMYQKGGGKSAITG 270

Query: 254  EKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD 312
             ++ +V  ++  +IP+ I+F ALG  +D+EI+  I +   D  ++    +S+ +A     
Sbjct: 271  NQIRAVIPYIRQDIPVVIIFRALGFVADREILEHICYDFSDAELMERFKSSLEEAF---- 326

Query: 313  EFRKGRNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSL----HGTKQKARFLGY 363
              ++   AL ++ +  +G+     ++      ++ +   + P +    H   +KA FLGY
Sbjct: 327  VIQEQEVALDFIGR--RGSAINVSKADRIRYAQDILQKEMLPHVGVEDHNETKKAYFLGY 384

Query: 364  MVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDR 423
            +V  LL    GR   D+RD + NKRL+LAG LL    ++      K +   LQ+ +   +
Sbjct: 385  VVHKLLMCSLGRIGEDDRDHYGNKRLDLAGPLLGGLFRILFKKLTKDVKSFLQKCVDNGK 444

Query: 424  TVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTR 483
                +   + +  +TNGL  + +TG W    +++   +G+   L R     +L  LRR  
Sbjct: 445  DFN-LTLAIRSRTITNGLRYSLATGNWG--MQKSASKAGVSQVLNRLTYASSLSHLRRLN 501

Query: 484  QQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLF 542
              +   GK    R  H +HWG IC   TP+G+  GLVKNL +   +S  S   PI E L 
Sbjct: 502  TPLGREGKQAQPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYISVGSPQAPILEFLE 561

Query: 543  NSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
                E L +     +    K+FV+G+W+GV ++    +  LR  RR  ++  +V + RD 
Sbjct: 562  EWATENLEEIKPQIIPHSTKIFVNGNWVGVHREPNELIRTLRSLRRCVDIDAEVSVIRDL 621

Query: 603  LQSEVRIFMDAGRILRPLLVVEN---------MGKIKSLEGKNYTFQALLDHGIIELVGT 653
            +  E+RI+ DAGR+ RPL +VE+         + K+++ +  NY +  LL  G++EL+ T
Sbjct: 622  MNKELRIYTDAGRVCRPLFIVEDNQLLLQKEQVVKLQNHKITNYRWHNLLTDGVVELIDT 681

Query: 654  EEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQS 713
            EEEE C  A   K    D+     I  THCE+  S +LG+   IIPF +H+ + R  YQS
Sbjct: 682  EEEEVCMIAMEPK----DVGTGSQIH-THCEIHPSMILGICASIIPFPDHNQSPRNTYQS 736

Query: 714  QKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYN 773
                 QA+G   +N   R+DT+++ L YPQ+PL  T   +      Y H   LP     +
Sbjct: 737  AM-GKQAMGIYCSNFRARMDTMANVLNYPQKPLVTTRAME------YLHFRELP-----S 784

Query: 774  GQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMV 833
            G NAIV +  + GYNQEDSL+MN+++++RG FRS   R Y  +  NK             
Sbjct: 785  GINAIVGIASYTGYNQEDSLIMNQSAIDRGFFRSTFYRCYIDQERNKSPHGGPGGGAGGA 844

Query: 834  NFGKIQS---------KIGRVDSLDDDGFPFIGANLQSGDIVIGKYA------DSGA--- 875
            N  + +          + G    LD+DG    G  +   DI+IGK +      DS     
Sbjct: 845  NCEEFEKPSRENCLGLRHGSYHKLDNDGLVAPGTRVSGNDIIIGKTSPLPQSEDSSLEQR 904

Query: 876  ----DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLG 931
                D S  L+  E G++  V+L++N DG  F+ V  R +R P +GDKF+S HGQKG +G
Sbjct: 905  HQKRDASTALRSHENGIIDSVMLTTNADGFKFTKVRFRNIRVPQIGDKFASRHGQKGTIG 964

Query: 932  FLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYAT 991
                QE+ PFT++GI PDIV+NPHA PSR T G L+E  LGK  +  G       +  AT
Sbjct: 965  MTYRQEDMPFTVEGITPDIVVNPHAIPSRMTVGHLVECLLGKVSSQTGD------EGDAT 1018

Query: 992  PFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKF 1051
            PF   +V AI + LH  G+ K G E +Y G TG  + + IFIGPTFYQRL HM +DK+  
Sbjct: 1019 PFTDVTVQAIADTLHNLGYQKHGNEVMYSGHTGRRLTAQIFIGPTFYQRLKHMVDDKIHS 1078

Query: 1052 RNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRK 1111
            R+ GPV  LTRQP+  R R GG++ GEMERDCLI+HG+A  L +RLF  SD+Y++H+C  
Sbjct: 1079 RSRGPVTMLTRQPMEGRAREGGLRMGEMERDCLISHGSANFLMDRLFANSDAYRVHVCDI 1138

Query: 1112 CKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
            C  +A      +   RK+    CR C +   I + ++PY  KLL QEL +M I  +  T
Sbjct: 1139 CGIIA------IANLRKMTFE-CRTCRNKTQISQVHIPYSCKLLFQELMAMSIAPRLFT 1190


>gi|67515344|gb|AAY68201.1| RNA polymerase IV second largest subunit [Lunularia cruciata]
          Length = 789

 Score =  634 bits (1634), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 359/823 (43%), Positives = 505/823 (61%), Gaps = 93/823 (11%)

Query: 405  AHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAW-SHPFKRTERISGI 463
             H +  M K LQ+ L  ++ +  I+ Y++  ++T G   +FS+G W  H   +    SGI
Sbjct: 2    GHVQNTMRKRLQKHLSKNQELSSIDKYVEDKVITRGFRNSFSSGNWMGHDLMKN---SGI 58

Query: 464  VANLGRANPLQTLVDLRRTRQQVQYTGKVG-DARYPHPSHWGKICFLSTPDGENCGLVKN 522
            V +L R+NP+ TL  LR  RQ V  T KVG DAR+P  S WG++C + TPDGE CGLVKN
Sbjct: 59   VFDLKRSNPISTLCQLRELRQYVPPTVKVGEDARHPTFSQWGRVCPIDTPDGEACGLVKN 118

Query: 523  LGVTGLVSTSILE-PIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSL--SF 579
            + +TG+VS++  E P+ + L ++GM  L    S +LG   KVFV+G W+GV K +     
Sbjct: 119  MALTGIVSSAGTEAPVIDFLESNGMIPLESVTSDTLGMVMKVFVNGRWLGVVKHTHFEPI 178

Query: 580  VSELRRKRRRKELPT----QVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------- 625
            +  LR  R+R   PT    Q+E+     + E+++  D+GR+LRPLLVV +          
Sbjct: 179  IKGLRALRKRP--PTAELYQMEVVIIRPKFEIQVSTDSGRVLRPLLVVRHNKMNLNQDSV 236

Query: 626  ---MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLK--DIEDKKPIKF 680
               + + + L  + +T+   L   +IEL+G EEEE    A     L K   ++ +K ++F
Sbjct: 237  TQYISEKRGLPHERFTW--FLQKHVIELLGVEEEEKALIALHGADLEKANGLQSRKTVEF 294

Query: 681  THCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLF 740
            +H E+  S +LGLS  +IPF + + + R L+Q+ KHS QAIG   TN + R DT    LF
Sbjct: 295  SHAEIHPSLILGLSASVIPFPHRNQSSRNLFQAHKHSKQAIGVYVTNLACRADTSGQHLF 354

Query: 741  YPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASL 800
            YPQ  L +T I +CL K            E+++GQNAIVA+  + GYNQEDS++M++++L
Sbjct: 355  YPQVQLVKTNIVNCLQKD-----------EIFSGQNAIVAIACYTGYNQEDSIIMDQSAL 403

Query: 801  ERGMFRSEHIRSYKAEV-DNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGAN 859
            +RGMFR++H R++K+E   + E   K  ++DD      ++S       L+DDG P+IG N
Sbjct: 404  DRGMFRTQHYRTFKSEERSDHETFGKPSAADDSGGPRAMRSD----QILEDDGLPYIGCN 459

Query: 860  LQSGDIVIGKY----------ADSG--ADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVS 907
            L   D+++GK           ADS    D S +LK  E+G V++V+L  +++GK  + V 
Sbjct: 460  LGMNDVIVGKIVTHSQKNTQSADSARLVDTSTRLKAHEKGRVEQVILVQDEEGKKIAKVK 519

Query: 908  LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLL 967
            LR+ R P +GDKFS MHGQKG++G + +QE+ PFT +GIVPDI+INPHAFPSRQT GQ+ 
Sbjct: 520  LRETRIPQVGDKFSRMHGQKGIVGMVFTQEDLPFTNEGIVPDIIINPHAFPSRQTLGQMC 579

Query: 968  EAALGKGIAALGKGICSGLKRYATPFATPS-VDAITEQLHRAGFSKWGTERLYDGRTGEM 1026
            E+ALGK IA  G+ +      +ATPF   S V++ITE LH +G++ WG E +Y+G TG+ 
Sbjct: 580  ESALGKAIAKRGEQL------FATPFNPASTVESITEALHESGYNGWGMETMYNGYTGKA 633

Query: 1027 VRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIA 1086
            + + IFIG TFYQRL HM EDK+K+R+ G VHPLTRQPV+DRKR GG+KFGEMERDCLIA
Sbjct: 634  MVAKIFIGSTFYQRLTHMVEDKIKYRSRGHVHPLTRQPVSDRKRHGGVKFGEMERDCLIA 693

Query: 1087 HGAAANLHERLFTLSDSYQMHICRKCKNVANV-IQRVVGGGRKVRGPYCRICDSG----- 1140
            HGAAA L ER F LSD +++HICR CK +A++ I R+         P CR C        
Sbjct: 694  HGAAATLQERTFHLSDYHEIHICRSCKQMAHMGIDRI---------PTCRFCKEKNKKVV 744

Query: 1141 ------------DDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                        ++IVK  +PY  KLL QEL SMGI++  DTE
Sbjct: 745  KGKKTDKTETKVEEIVKVEIPYACKLLIQELQSMGISVGLDTE 787


>gi|336466639|gb|EGO54804.1| DNA-dependent RNA polymerase II RPB140 [Neurospora tetrasperma FGSC
            2508]
 gi|350286464|gb|EGZ67711.1| DNA-dependent RNA polymerase II RPB140 [Neurospora tetrasperma FGSC
            2509]
          Length = 1287

 Score =  634 bits (1634), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 445/1270 (35%), Positives = 652/1270 (51%), Gaps = 175/1270 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVE---PGYDPSKKGEGEWRYASMRF 88
            S+F+  GLVS QI+S+NEF  + +Q   D + +  ++   PG D  +  E   R   + F
Sbjct: 54   SYFDLKGLVSQQIDSFNEFTTDTVQSLIDEYADLTLDHPSPGDDEGR--EIILRRYDVHF 111

Query: 89   GQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKV----QFQVYTQK---RVTS 141
            G++ + +P+     G +   + P   R +N+TYS+ +  KV    +  V  +K   ++T 
Sbjct: 112  GEIIISRPTLTEATG-ETISLLPYECRDRNLTYSAPIYCKVTKRARIAVSEKKPLNQLTD 170

Query: 142  DKF----KTGREQYIQKEVL---------SDETTN-------IIIGRIPVMVKSDLC--W 179
            D+     +TG      + +           D+  N       + +G+IP+MVKS +C  +
Sbjct: 171  DEHDHMARTGEHPTALRWIEEESAPPEPPKDDKINPENLKGYLFLGKIPIMVKSKICHLY 230

Query: 180  MKGVEK----GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE--- 231
            M+  E      +C +D GGYFII G+EKV +AQE+     + V     G +V+Y++E   
Sbjct: 231  MEDDESLFTLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKPPGGSVSYQAEIRS 290

Query: 232  --NKRNRLI--VRLVDMSKFEDIKG---GEKVLSVYFLSTEIPIWILFFALGVSSDKEIV 284
               K +RLI  +++   +K +  KG       +++ ++  E+ + I+F ALGV SD++I+
Sbjct: 291  ALEKGSRLISSLQMRLHTKADQNKGRLANTVSVTLPYVKEEVSLAIVFRALGVVSDEDIL 350

Query: 285  NLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPG----ESTE 340
            N I +   D  +L  L   I +A   C + R+   AL Y+ K   G+T        ++ +
Sbjct: 351  NHICYDRRDSQMLEALRPCIEEA--FCIQDRE--VALDYIGKRGNGSTGINRNGRIKAAK 406

Query: 341  ECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL 396
            E +   L P +   +    +KA FLGYMV  LLQ   GRR  D+RD F  KRL+LAG LL
Sbjct: 407  EMLQKELLPHISQAEGCETRKAFFLGYMVHKLLQCVLGRRDTDDRDHFGKKRLDLAGPLL 466

Query: 397  ERELKVHIAHARKRMAKALQRDLYG--DRTVRPIEYY-----LDASILTNGLSRAFSTGA 449
                    A   + + + L +DL G   R V   +++     + AS LTNGL  + +TG 
Sbjct: 467  --------AKLFRGIVRRLTQDLMGYMKRCVDTNKHFSLALGIKASTLTNGLKYSLATGN 518

Query: 450  WSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFL 509
            W    K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C  
Sbjct: 519  WGDQKKAMSSTAGVSQVLNRYTFSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPA 578

Query: 510  STPDGENCGLVKNLGVTGLVSTSIL-EPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGD 568
             TP+G+ CGLVKNL +   VS   L +PI E +    ME L +          KVFV+G 
Sbjct: 579  ETPEGQACGLVKNLSLMCFVSVGTLADPIIEFMIARNMEVLEEYEPLRYPNATKVFVNGT 638

Query: 569  WIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK 628
            W+GV +D    V+ ++  RR+  +  +V + RD    E +IF DAGR++RPL VVE    
Sbjct: 639  WVGVHQDPKHLVTLVQNLRRKNIISFEVSLVRDIRDREFKIFSDAGRVMRPLFVVEQEDN 698

Query: 629  ----------------IKSLE-----GKN----YTFQALLDHGIIELVGTEEEED---CC 660
                            I+ LE     GK     + +Q LL+ G IE +  EEEE    C 
Sbjct: 699  SESGVEKGQLILTKEHIRRLEQDKELGKYHEEYFGWQGLLESGAIEYLDAEEEETAMICM 758

Query: 661  TAWGI------KYLLKDIEDKKPIK---------------FTHCELDMSFLLGLSCGIIP 699
            T   +      K+  ++ ED    +               +THCE+  S LLG+   IIP
Sbjct: 759  TPEDLDTYRQHKFKGREFEDDAANRGNSRIKTKFNPTTHMYTHCEIHPSMLLGICASIIP 818

Query: 700  FANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPG 759
            F +H+ + R  YQS     QA+GF  TN S R+DT+++ L+YPQ+PL  T   +      
Sbjct: 819  FPDHNQSPRNTYQSAM-GKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSME------ 871

Query: 760  YGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYK-AEVD 818
                  L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   RSY   E  
Sbjct: 872  -----YLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGIFRSLFFRSYTDCEKR 926

Query: 819  NKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH- 877
                 V++    D  N   ++ K G  D L++DG    G  +   DI+IGK +    D+ 
Sbjct: 927  VGINIVEQFEKPDRSN--TLRPKHGTYDKLENDGIIAPGIRVTGDDIIIGKTSPINPDNQ 984

Query: 878  --------------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSM 923
                          S  L+ TE G+V  V  ++N DG  +  V +R  + P +GDKF+S 
Sbjct: 985  ELGQRTAQHVKRDASTPLRSTESGIVDSVAFTTNQDGLRYVKVRVRTTKIPQIGDKFASR 1044

Query: 924  HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGIC 983
            HGQKG +G    QE+ PFT +GI PDI+INPHA PSR T   L+E  L K       G  
Sbjct: 1045 HGQKGTIGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLLSK------VGAL 1098

Query: 984  SGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIH 1043
             G++  ATPF   +VD+++  L   G+   G E +Y G TG+ +R+ +F GPT+YQRL H
Sbjct: 1099 KGMEGDATPFTDVTVDSVSNLLREHGYQSRGFEIMYHGHTGKKLRAQVFFGPTYYQRLRH 1158

Query: 1044 MSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDS 1103
            M +DK+  R  GPV  +TRQPV  R R GG++FGEMERDC+IAHGAAA L ERLF +SD+
Sbjct: 1159 MVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDA 1218

Query: 1104 YQMHICRKC---KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELF 1160
            +++HIC  C     +AN+ ++            CR C +   I + ++PY AKLL QEL 
Sbjct: 1219 FRVHICEICGLMTPIANLTKQSFE---------CRPCKNKTKIAQVHMPYAAKLLFQELM 1269

Query: 1161 SMGITLKFDT 1170
            SM I  +  T
Sbjct: 1270 SMNIASRLFT 1279


>gi|367005628|ref|XP_003687546.1| hypothetical protein TPHA_0J02910 [Tetrapisispora phaffii CBS 4417]
 gi|357525850|emb|CCE65112.1| hypothetical protein TPHA_0J02910 [Tetrapisispora phaffii CBS 4417]
          Length = 1224

 Score =  634 bits (1634), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 426/1251 (34%), Positives = 637/1251 (50%), Gaps = 122/1251 (9%)

Query: 2    DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDS 61
            D D  GF D  +     + +          SFF E GLVS Q++S+N+F+   LQ     
Sbjct: 10   DEDPYGFEDENAPISAEDSW------TVISSFFREKGLVSQQLDSFNQFVDYTLQDIISE 63

Query: 62   FGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTY 121
                I+E     + + +   R   + FG++ + KP     +G   H ++P+ ARL+N+TY
Sbjct: 64   DSTLILEQLAQHTTESDNISRKYEISFGKIYVTKPMVNESDGV-THALYPQEARLRNLTY 122

Query: 122  SSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMK 181
            SS + V V  + Y    V   + K       ++     E   + IGR+PVM++S  C++ 
Sbjct: 123  SSGLFVDVNKRTYEATDVPGRELKYN--LIAEESEEDSENDKVFIGRLPVMLRSKNCYLS 180

Query: 182  GVEKGD------CDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE--- 231
               + D      C FD GGYFII G+EKV +AQE+     + V   +    +++ +E   
Sbjct: 181  DATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRS 240

Query: 232  --NKRNRLIVRL-VDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLID 288
               K +R I  L V +   E         ++ ++  +IPI I+F ALG+  D EI+  I 
Sbjct: 241  ALEKGSRFISTLQVKLYGRESSSTRTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHIC 300

Query: 289  FTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES-----TEECM 343
            +   D  +L +L   + D     D       AL ++ +  +GT     +        + +
Sbjct: 301  YDVNDWQMLEMLKPCVEDGFVIQDR----ETALDFIGR--RGTALGIKKEKRIQYARDIL 354

Query: 344  NTYLFP---SLHG-TKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERE 399
                 P    L G   +KA FLGYM+  LL     R+  D+RD F  KRL+LAG LL + 
Sbjct: 355  QKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLGQL 414

Query: 400  LKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTER 459
             K       K + + +QR +        ++  ++A  +T+GL  A +TG W    K    
Sbjct: 415  FKTLFRKLTKDIFRYMQRTVEEANDFN-MKLAINAKTITSGLKYALATGNWGEQKKAMTS 473

Query: 460  ISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGL 519
             +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGL
Sbjct: 474  RAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGL 533

Query: 520  VKNLGVTGLVSTSI-LEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLS 578
            VKNL +   +S      PI   L   GME L D   +      +VFV+G W GV ++   
Sbjct: 534  VKNLSLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPAR 593

Query: 579  FVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------------- 625
             +  LR  RR+ ++  +V + RD  + E++IF DAGR+ RPL +V++             
Sbjct: 594  LMETLRTLRRKGDINPEVSMIRDIREQELKIFTDAGRVYRPLFIVDDDDDLGHKELRVRK 653

Query: 626  -------MGKIKSLEG-----KNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYL----- 668
                     + + +EG     + YT+ +LL+ G++E +  EEEE    A   + L     
Sbjct: 654  GHVARLMATEYQDIEGGFEDVEEYTWTSLLNEGLVEYIDAEEEESILIAMQPEDLDPVSD 713

Query: 669  ----LKDIE--DKKPIK-------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQK 715
                + D+E    K I+       FTHCE+  S +LG++  IIPF +H+ + R  YQS  
Sbjct: 714  EPEAIPDVETDTAKRIRAVHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQS-A 772

Query: 716  HSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQ 775
               QA+G   TN ++R+DT+++ L+YPQ+PL  T   +            L   EL  GQ
Sbjct: 773  MGKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAME-----------YLKFRELPAGQ 821

Query: 776  NAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF 835
            NAIVA+  + GYNQEDS++MN++S++RG+FRS   RSY  +     M +   + +     
Sbjct: 822  NAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSIT-ETFEKPQRT 880

Query: 836  GKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---------------DSGADHSIK 880
              ++ K G  D LDDDG    G  +   DI+IGK                  S  D S  
Sbjct: 881  NTLRMKHGSYDKLDDDGLISPGVRVSGEDIIIGKTTPISPDEEELGQRTAYHSKRDASTP 940

Query: 881  LKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFP 940
            L+ TE G+V +V++++N DG  F  V +R  + P +GDKF+S HGQKG +G    +E+ P
Sbjct: 941  LRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYGREDMP 1000

Query: 941  FTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDA 1000
            FT +GIVPD++INPHA PSR T   L+E  L K +AAL     SG +  A+PF   +V+ 
Sbjct: 1001 FTAEGIVPDLIINPHAIPSRMTVAHLIECLLSK-VAAL-----SGNEGDASPFTDITVEG 1054

Query: 1001 ITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPL 1060
            I++ L   G+   G E +Y+G TG+ + + IF GPT+YQRL HM +DK+  R  GP+  L
Sbjct: 1055 ISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVL 1114

Query: 1061 TRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQ 1120
            TRQPV  R R GG++FGEMERDC+IAHGAAA L ERL   SD++++H+C  C  +  VI 
Sbjct: 1115 TRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERLMEASDAFRVHVCGIC-GLMTVIA 1173

Query: 1121 RVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
            ++     +     C+ CD+  DI +  +PY AKLL QEL +M IT +  T+
Sbjct: 1174 KLNHNQFE-----CKGCDNKIDIYQIRIPYAAKLLFQELMAMNITPRLYTD 1219


>gi|28881404|emb|CAD70445.1| DNA-dependent RNA polymerase II RPB140 (RPB2) [Neurospora crassa]
          Length = 1287

 Score =  634 bits (1634), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 445/1270 (35%), Positives = 652/1270 (51%), Gaps = 175/1270 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVE---PGYDPSKKGEGEWRYASMRF 88
            S+F+  GLVS QI+S+NEF  + +Q   D + +  ++   PG D  +  E   R   + F
Sbjct: 54   SYFDLKGLVSQQIDSFNEFTTDTVQSLIDEYADLTLDHPSPGDDEGR--EIILRRYDVHF 111

Query: 89   GQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKV----QFQVYTQK---RVTS 141
            G++ + +P+     G +   + P   R +N+TYS+ +  KV    +  V  +K   ++T 
Sbjct: 112  GEIIISRPTLTEATG-ETISLLPYECRDRNLTYSAPIYCKVTKRARIAVSEKKPLNQLTD 170

Query: 142  DKF----KTGREQYIQKEVL---------SDETTN-------IIIGRIPVMVKSDLC--W 179
            D+     +TG      + +           D+  N       + +G+IP+MVKS +C  +
Sbjct: 171  DEHDHMARTGEHPTALRWIEEESAPPEPPKDDKINPENLKGYLFLGKIPIMVKSKICHLY 230

Query: 180  MKGVEK----GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE--- 231
            M+  E      +C +D GGYFII G+EKV +AQE+     + V     G +V+Y++E   
Sbjct: 231  MEDDESLFTLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKPPGGSVSYQAEIRS 290

Query: 232  --NKRNRLI--VRLVDMSKFEDIKG---GEKVLSVYFLSTEIPIWILFFALGVSSDKEIV 284
               K +RLI  +++   +K +  KG       +++ ++  E+ + I+F ALGV SD++I+
Sbjct: 291  ALEKGSRLISSLQMRLHTKADQNKGRLANTVSVTLPYVKEEVSLAIVFRALGVVSDEDIL 350

Query: 285  NLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPG----ESTE 340
            N I +   D  +L  L   I +A   C + R+   AL Y+ K   G+T        ++ +
Sbjct: 351  NHICYDRRDSQMLEALRPCIEEA--FCIQDRE--VALDYIGKRGNGSTGINRNGRIKAAK 406

Query: 341  ECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL 396
            E +   L P +   +    +KA FLGYMV  LLQ   GRR  D+RD F  KRL+LAG LL
Sbjct: 407  EMLQKELLPHISQAEGCETRKAFFLGYMVHKLLQCVLGRRDTDDRDHFGKKRLDLAGPLL 466

Query: 397  ERELKVHIAHARKRMAKALQRDLYG--DRTVRPIEYY-----LDASILTNGLSRAFSTGA 449
                    A   + + + L +DL G   R V   +++     + AS LTNGL  + +TG 
Sbjct: 467  --------AKLFRGIVRRLTQDLMGYMKRCVDTNKHFSLALGIKASTLTNGLKYSLATGN 518

Query: 450  WSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFL 509
            W    K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C  
Sbjct: 519  WGDQKKAMSSTAGVSQVLNRYTFSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPA 578

Query: 510  STPDGENCGLVKNLGVTGLVSTSIL-EPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGD 568
             TP+G+ CGLVKNL +   VS   L +PI E +    ME L +          KVFV+G 
Sbjct: 579  ETPEGQACGLVKNLSLMCFVSVGTLADPIIEFMIARNMEVLEEYEPLRYPNATKVFVNGT 638

Query: 569  WIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK 628
            W+GV +D    V+ ++  RR+  +  +V + RD    E +IF DAGR++RPL VVE    
Sbjct: 639  WVGVHQDPKHLVTLVQNLRRKNIISFEVSLVRDIRDREFKIFSDAGRVMRPLFVVEQEDN 698

Query: 629  ----------------IKSLE-----GKN----YTFQALLDHGIIELVGTEEEED---CC 660
                            I+ LE     GK     + +Q LL+ G IE +  EEEE    C 
Sbjct: 699  SESGVEKGQLILTKEHIRRLEQDKELGKYHEDYFGWQGLLESGAIEYLDAEEEETAMICM 758

Query: 661  TAWGI------KYLLKDIEDKKPIK---------------FTHCELDMSFLLGLSCGIIP 699
            T   +      K+  ++ ED    +               +THCE+  S LLG+   IIP
Sbjct: 759  TPEDLDTYRQHKFKGREFEDDAANRGNSRIKTKFNPTTHMYTHCEIHPSMLLGICASIIP 818

Query: 700  FANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPG 759
            F +H+ + R  YQS     QA+GF  TN S R+DT+++ L+YPQ+PL  T   +      
Sbjct: 819  FPDHNQSPRNTYQSAM-GKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSME------ 871

Query: 760  YGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYK-AEVD 818
                  L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   RSY   E  
Sbjct: 872  -----YLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGIFRSLFFRSYTDCEKR 926

Query: 819  NKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH- 877
                 V++    D  N   ++ K G  D L++DG    G  +   DI+IGK +    D+ 
Sbjct: 927  VGINIVEQFEKPDRSN--TLRPKHGTYDKLENDGIIAPGIRVTGDDIIIGKTSPINPDNQ 984

Query: 878  --------------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSM 923
                          S  L+ TE G+V  V  ++N DG  +  V +R  + P +GDKF+S 
Sbjct: 985  ELGQRTAQHVKRDASTPLRSTESGIVDSVAFTTNQDGLRYVKVRVRTTKIPQIGDKFASR 1044

Query: 924  HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGIC 983
            HGQKG +G    QE+ PFT +GI PDI+INPHA PSR T   L+E  L K       G  
Sbjct: 1045 HGQKGTIGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLLSK------VGAL 1098

Query: 984  SGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIH 1043
             G++  ATPF   +VD+++  L   G+   G E +Y G TG+ +R+ +F GPT+YQRL H
Sbjct: 1099 KGMEGDATPFTDVTVDSVSNLLREHGYQSRGFEIMYHGHTGKKLRAQVFFGPTYYQRLRH 1158

Query: 1044 MSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDS 1103
            M +DK+  R  GPV  +TRQPV  R R GG++FGEMERDC+IAHGAAA L ERLF +SD+
Sbjct: 1159 MVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDA 1218

Query: 1104 YQMHICRKC---KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELF 1160
            +++HIC  C     +AN+ ++            CR C +   I + ++PY AKLL QEL 
Sbjct: 1219 FRVHICEICGLMTPIANLTKQSFE---------CRPCKNKTKIAQVHMPYAAKLLFQELM 1269

Query: 1161 SMGITLKFDT 1170
            SM I  +  T
Sbjct: 1270 SMNIASRLFT 1279


>gi|63054498|ref|NP_593101.2| RNA polymerase II complex subunit Rpb2 [Schizosaccharomyces pombe
            972h-]
 gi|19862286|sp|Q02061.2|RPB2_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2; AltName: Full=DNA-directed RNA polymerase II 138 kDa
            polypeptide
 gi|256599716|pdb|3H0G|B Chain B, Rna Polymerase Ii From Schizosaccharomyces Pombe
 gi|256599728|pdb|3H0G|N Chain N, Rna Polymerase Ii From Schizosaccharomyces Pombe
 gi|159883907|emb|CAB86470.2| RNA polymerase II complex subunit Rpb2 [Schizosaccharomyces pombe]
          Length = 1210

 Score =  634 bits (1634), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 429/1240 (34%), Positives = 641/1240 (51%), Gaps = 127/1240 (10%)

Query: 18   GEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKG 77
             E   +  C     SFF E  L   Q+ S++EF++N +Q+  D    T+    Y      
Sbjct: 9    NETLTQEDCWTVISSFFEETSLARQQLFSFDEFVQNTMQEIVDD-DSTLTLDQYAQHTGA 67

Query: 78   EGE-WRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQ 136
            +G+  R   + FGQ+ L +P+    +G     MFP+ ARL+N+TYSS + V ++ +V   
Sbjct: 68   QGDVTRRYEINFGQIYLSRPTMTEADGSTT-TMFPQEARLRNLTYSSPLYVDMRKKVM-- 124

Query: 137  KRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDF 190
              V +D      E+    E   +E + + IG+IP+M++S  C + GV      +  +C +
Sbjct: 125  --VAADSNVPIGEEEWLVEEEDEEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECPY 182

Query: 191  DHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE-----NKRNRLI--VRLV 242
            D GGYFII G+EKV +AQE+     + V   +    +AY +E      + +RLI  +++ 
Sbjct: 183  DQGGYFIINGSEKVIIAQERSAANIVQVFKKAAPSPIAYVAEIRSALERGSRLISSMQIK 242

Query: 243  DMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFA 302
             M++  +  G     ++ ++ ++IPI I+F ALGV  D++I+  I +   D  +L ++  
Sbjct: 243  LMARNTENSGQTIRATLPYIRSDIPIVIVFRALGVVPDRDILEHICYDPNDFQMLEMMKP 302

Query: 303  SIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLHGTK 355
             I +A    D+      AL Y+ K  +G+T   G + E       + +   L P +   +
Sbjct: 303  CIEEAFVIQDK----DIALDYIGK--RGST--TGVTREKRLRYAHDILQKELLPHITTME 354

Query: 356  ----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRM 411
                +KA FLGYM+  +L     RR+ D+RD F  KRL+LAG LL    ++      + +
Sbjct: 355  GFETRKAFFLGYMIHRMLLCALERREPDDRDHFGKKRLDLAGPLLASLFRMLFRKMTRDV 414

Query: 412  AKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRAN 471
             K +Q+ +  +R    +   + ++I+TNGL  + +TG W    +      G+   L R  
Sbjct: 415  YKYMQKCVETNREFN-LTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYT 473

Query: 472  PLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST 531
               TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   VS 
Sbjct: 474  FASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSV 533

Query: 532  -SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRK 590
             S   PI E L   G+E L D    +     KVFV+G W+GV +D       LR  RRR 
Sbjct: 534  GSPSAPIIEFLEEWGLETLEDYNPSASPNATKVFVNGVWLGVHRDPAHLTETLRSLRRRL 593

Query: 591  ELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKI--------KSLEGKN 636
            ++  +V I RD  + E+R+F DAGRI RPL +V+N       G++        + +E K+
Sbjct: 594  DISAEVSIVRDIREKELRLFTDAGRICRPLFIVDNNPNSERRGELCIRKEHIQQLIEDKD 653

Query: 637  ---------YTFQALLDHGIIELVGTEEEEDCCTA---------------WGIKYLLKDI 672
                     + + AL+  G+IE +  EEEE    A               + +K  L   
Sbjct: 654  RYDIDPEQRFGWTALVSSGLIEYLDAEEEETVMIAMSPEDLEASRQMQAGYEVKEELDPA 713

Query: 673  EDKKPI------KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTT 726
            +  KP        +THCE+  + +LG+   IIPF +H+ + R  YQS     QA+G   T
Sbjct: 714  QRVKPAPNPHVHAWTHCEIHPAMILGILASIIPFPDHNQSPRNTYQS-AMGKQAMGVYLT 772

Query: 727  NPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLG 786
            N  +R+DT+++ L+YPQ+PL  T   +            L   EL  GQNAIVA+  + G
Sbjct: 773  NYQVRMDTMANILYYPQKPLATTRSME-----------YLKFRELPAGQNAIVAILCYSG 821

Query: 787  YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVD 846
            YNQEDS++MN+AS++RG+FRS   R+Y  +     M V     +  V    ++ K G  D
Sbjct: 822  YNQEDSIIMNQASIDRGLFRSIFYRTYTDQEKKIGMTVME-EFERPVRSTTLRMKHGTYD 880

Query: 847  SLDDDGFPFIGANLQSGDIVIGKYADSGADH---------------SIKLKHTERGMVQK 891
             L+DDG    G  +   DI+IGK A    DH               S  L+ TE G+V +
Sbjct: 881  KLEDDGLIAPGTRVSGEDIIIGKTAPIPLDHEELGQRTQLHAKRDVSTPLRSTESGIVDQ 940

Query: 892  VVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIV 951
            V++++N +G  F  V +R  R P +GDKF+S HGQKG +G     E+ PF+ QGIVPDI+
Sbjct: 941  VMVTTNQEGLKFVKVRMRSTRIPQIGDKFASRHGQKGTIGMTYRHEDMPFSAQGIVPDII 1000

Query: 952  INPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFS 1011
            INPHA PSR T   L+E  L K ++AL     SG +  ATPF   +V+A+++ L   GF 
Sbjct: 1001 INPHAIPSRMTVAHLVECQLSK-VSAL-----SGFEGDATPFTDVTVEAVSKLLRSHGFQ 1054

Query: 1012 KWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRF 1071
              G E +Y G TG  + + +F+GPT+YQRL H+ +DK+  R  GPV  LTRQPV  R R 
Sbjct: 1055 SRGFEVMYHGHTGRKLVAQVFLGPTYYQRLKHLVDDKIHARARGPVQILTRQPVEGRSRD 1114

Query: 1072 GGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRG 1131
            GG++FGEMERDC I+HG ++ L ERLF  SD+Y++ +C  C  +A           K   
Sbjct: 1115 GGLRFGEMERDCQISHGCSSVLRERLFDCSDAYRVIVCDICGLIAI-------ASYKKDS 1167

Query: 1132 PYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
              CR C +     +  +PY AKLL QEL SM I  +  T+
Sbjct: 1168 YECRSCQNRTRFSQVYLPYAAKLLFQELMSMNIAPRLFTK 1207


>gi|66806179|ref|XP_636812.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
 gi|74896933|sp|Q54J75.1|RPB2_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2
 gi|60465215|gb|EAL63310.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
          Length = 1170

 Score =  633 bits (1633), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 421/1201 (35%), Positives = 632/1201 (52%), Gaps = 121/1201 (10%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYA------S 85
            ++F E GLV  Q++S++EFI+N +Q+  D      + P    S+   G+   +      S
Sbjct: 29   AYFQEKGLVRQQLDSFDEFIQNTMQEIIDESPPITLRP---ESQHHPGQAVVSNNVSTFS 85

Query: 86   MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
            ++FGQ+ L KP+  A   G    + P  AR++N+TYS+ + V +   V T  +   D+ +
Sbjct: 86   VKFGQIYLSKPT--AEIDGVSQQVTPNQARIRNLTYSAPLFVDITKTVMTGSKSKGDERR 143

Query: 146  TGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIK 199
            T        EVL      I IG++P+M++S  C +   +       G+C FD GGYFII 
Sbjct: 144  T-------DEVLK----RIFIGKVPIMLRSQYCMLNEADDRDLTTMGECSFDQGGYFIIN 192

Query: 200  GAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGE 254
            G+EKV +AQE++    ++V      +   +    +S  +        + +    +   G 
Sbjct: 193  GSEKVLIAQEKMNNNHVYVFKKSPPSKYSYVAEIRSCQETGSRPTSTMYLKMLHNTNKGP 252

Query: 255  KVL--SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD 312
              +  +V ++  ++P+ I+F ALG  +DK+I+  I +  +D  +++++  S+ ++     
Sbjct: 253  VGIKATVPYIKQDVPVIIVFRALGFVADKDILEHICYDFKDAQMMDLMRPSLEESF---- 308

Query: 313  EFRKGRNALKYVDKLIKGTTFPPGES----TEECMNTYLFPSLHGTK----QKARFLGYM 364
              +    AL Y+ K  +G+T    E       E +   + P +   +    +KA + GY+
Sbjct: 309  VIQSQEVALDYLGK--RGSTMGTREQRIKFAREVLQKEMLPHVSVAEFYETKKAFYFGYI 366

Query: 365  VKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRT 424
               LL A   RR  D+RD F NKRL+LAG LL    +       K +   LQR +  D+ 
Sbjct: 367  THRLLLASLERRPLDDRDHFANKRLDLAGPLLGTLFRQLFKKLTKDVRLYLQRCIDKDK- 425

Query: 425  VRPIEYYLDASI----LTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLR 480
                E+   +++    +T+GL  + +TG W    K     SG+   L R     TL  LR
Sbjct: 426  ----EFIASSAVKSKTITSGLKYSLATGNWGSS-KSGGTKSGVAQVLNRLTFASTLSHLR 480

Query: 481  RTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFE 539
            R    +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  S  +PI E
Sbjct: 481  RLNTPIGREGKLAKPRQLHNTHWGIVCPSETPEGQACGLVKNLAMMSYISVGSASQPILE 540

Query: 540  QLFNSGMEKLADDASYS-LGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEI 598
             L     E L + +  S +    K+FV+G W+G+       +S LR  RR  ++  +V +
Sbjct: 541  FLEEWTTENLEEISDLSSIFSATKIFVNGMWVGIHHQPDKLLSTLRLLRRCGDVSVEVSV 600

Query: 599  KRDELQSEVRIFMDAGRILRPLLVVE-NMGKIKS------LEGKNYTFQALLDHGIIELV 651
             RD  + E+R++ D GR  RPL VV+ N  +IK       +    Y +Q LL  GI+E +
Sbjct: 601  VRDIREKELRLYTDPGRCCRPLFVVQDNKVQIKKQHINKLINNDEYKWQDLLSEGIVEYI 660

Query: 652  GTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLY 711
              EEEE    A   + L+    ++    +THCE+  S +LG+ C IIPF +H+ + R  Y
Sbjct: 661  DAEEEETVLIAMTPEDLVPMPNEQIVHTYTHCEIHPSMILGICCSIIPFPDHNQSPRNTY 720

Query: 712  QSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPEL 771
            Q+     QA+G   TN  +R+DT++H LFYPQ+PL  T   +      Y H   LP    
Sbjct: 721  QA-AMGKQAMGVYITNYQLRMDTMAHVLFYPQKPLVTTRSME------YLHFRELP---- 769

Query: 772  YNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDD 831
              GQN  VA+  + GYNQEDS+++N+++++RG+FRS   R+YK E      Q K+ S  +
Sbjct: 770  -AGQNVCVAIACYSGYNQEDSVILNQSAIDRGLFRSMFYRAYKDE------QKKQTSLME 822

Query: 832  MVNFGKIQS------KIGRVDSLDDDGFPFIGANLQSGDIVIGKYA-------DSGA--- 875
             V F K +       + G  + +DDDG    G  +   DI+IGK         D G    
Sbjct: 823  EV-FEKPERDTCAGMRHGSYEKIDDDGLVAPGVRVAGDDIIIGKTTPLPPSDDDLGPKTR 881

Query: 876  -----DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVL 930
                 D S  L+ +E G+V +V+L+++ +G  F  V +R +R P +GDKFSS HGQKG  
Sbjct: 882  RHTKRDSSTALRSSETGIVDQVILTTSGEGFKFCKVRVRSMRVPQIGDKFSSRHGQKGTC 941

Query: 931  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYA 990
            G    QE+ PFT++GIVPDI++NPHA PSR T GQL+E  LGK  A+ G       +  A
Sbjct: 942  GMAYRQEDLPFTVEGIVPDIIVNPHAIPSRMTIGQLIECLLGKVSASTGD------EGDA 995

Query: 991  TPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVK 1050
            TPF   +V+AI++ LH+ G+   G E +Y+G TG  + + IFIGPT+YQRL HM +DK+ 
Sbjct: 996  TPFTDVTVEAISQALHKIGYQMTGHEVMYNGHTGRRMDAQIFIGPTYYQRLKHMVDDKIH 1055

Query: 1051 FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICR 1110
             R+ GPV  LTRQPV  R R GG++FGEMERDC+I+HGAA  L ERLF  SDSY++HIC 
Sbjct: 1056 SRSRGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGAAQFLKERLFDQSDSYRVHICD 1115

Query: 1111 KCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
             C  +A           K     CR C +   I +  +PY AKLL QEL SM I  +  T
Sbjct: 1116 ICGLIAI-------ANLKKNSFECRRCKNKTQISQIRMPYAAKLLFQELMSMSIAPRMFT 1168

Query: 1171 E 1171
            +
Sbjct: 1169 Q 1169


>gi|218554|dbj|BAA02600.1| RNA polymerase II second largest subunit [Schizosaccharomyces pombe]
          Length = 1210

 Score =  633 bits (1632), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 429/1240 (34%), Positives = 640/1240 (51%), Gaps = 127/1240 (10%)

Query: 18   GEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKG 77
             E   +  C     SFF E  L   Q+ S++EF++N +Q+  D    T+    Y      
Sbjct: 9    NETLTQEDCWTVISSFFEETSLARQQLFSFDEFVQNTMQEIVDD-DSTLTLDQYAQHTGA 67

Query: 78   EGE-WRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQ 136
            +G+  R   + FGQ+ L +P+    +G     MFP+ ARL+N+TYSS + V ++ +V   
Sbjct: 68   QGDVTRRYEINFGQIYLSRPTMTEADGSTT-TMFPQEARLRNLTYSSPLYVDMRKKVM-- 124

Query: 137  KRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDF 190
              V +D      E+    E   +E + + IG+IP+M++S  C + GV      +  +C +
Sbjct: 125  --VAADSNVPIGEEEWLVEEEDEEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECPY 182

Query: 191  DHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE-----NKRNRLI--VRLV 242
            D GGYFII G+EKV +AQE+     + V   +    +AY +E      + +RLI  +++ 
Sbjct: 183  DQGGYFIINGSEKVIIAQERSAANIVQVFKKAAPSPIAYVAEIRSALERGSRLISSMQIK 242

Query: 243  DMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFA 302
             M++  +  G     ++ ++ ++IPI I+F ALGV  D++I+  I +   D  +L ++  
Sbjct: 243  LMARNTENSGQTIRATLPYIRSDIPIVIVFRALGVVPDRDILEHICYDPNDFQMLEMMKP 302

Query: 303  SIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLHGTK 355
             I +A    D+      AL Y+ K  +G+T   G + E       + +   L P +   +
Sbjct: 303  CIEEAFVIQDK----DIALDYIGK--RGST--TGVTREKRLRYAHDILQKELLPHITTME 354

Query: 356  ----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRM 411
                +KA FLGYM+  +L     RR+ D+RD F  KRL+LAG LL    ++      + +
Sbjct: 355  GFETRKAFFLGYMIHRMLLCALERREPDDRDHFGKKRLDLAGPLLASLFRMLFRKMTRDV 414

Query: 412  AKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRAN 471
             K +Q+ +  +R    +   + ++I+TNGL  + +TG W    +      G+   L R  
Sbjct: 415  YKYMQKCVETNREFN-LTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYT 473

Query: 472  PLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST 531
               TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   VS 
Sbjct: 474  FASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSV 533

Query: 532  -SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRK 590
             S   PI E L   G+E L D    +     KVFV+G W+GV +D       LR  RRR 
Sbjct: 534  GSPSAPIIEFLEEWGLETLEDYNPSASPNATKVFVNGVWLGVHRDPAHLTETLRSLRRRL 593

Query: 591  ELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKI--------KSLEGKN 636
            ++  +V I RD  + E+R+F DAGRI RPL +V+N       G++        + +E K+
Sbjct: 594  DISAEVSIVRDIREKELRLFTDAGRICRPLFIVDNNPNSERRGELCIRKEHIQQLIEDKD 653

Query: 637  ---------YTFQALLDHGIIELVGTEEEEDCCTA---------------WGIKYLLKDI 672
                     + + AL+  G+IE +  EEEE    A               + +K  L   
Sbjct: 654  RYDIDPEQRFGWTALVSSGLIEYLDAEEEETVMIAMSPEDLEASRQMQAGYEVKEELDPA 713

Query: 673  EDKKPI------KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTT 726
            +  KP         THCE+  + +LG+   IIPF +H+ + R  YQS     QA+G   T
Sbjct: 714  QRVKPAPNPHVHARTHCEIHPAMILGILASIIPFPDHNQSPRNTYQS-AMGKQAMGVYLT 772

Query: 727  NPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLG 786
            N  +R+DT+++ L+YPQ+PL  T   +            L   EL  GQNAIVA+  + G
Sbjct: 773  NYQVRMDTMANILYYPQKPLATTRSME-----------YLKFRELPAGQNAIVAILCYSG 821

Query: 787  YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVD 846
            YNQEDS++MN+AS++RG+FRS   R+Y  +     M V     +  V    ++ K G  D
Sbjct: 822  YNQEDSIIMNQASIDRGLFRSIFYRTYTDQEKKIGMTVME-EFERPVRSTTLRMKHGTYD 880

Query: 847  SLDDDGFPFIGANLQSGDIVIGKYADSGADH---------------SIKLKHTERGMVQK 891
             L+DDG    G  +   DI+IGK A    DH               S  L+ TE G+V +
Sbjct: 881  KLEDDGLIAPGTRVSGEDIIIGKTAPIPLDHEELGQRTQLHAKRDVSTPLRSTESGIVDQ 940

Query: 892  VVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIV 951
            V++++N +G  F  V +R  R P +GDKF+S HGQKG +G     E+ PF+ QGIVPDI+
Sbjct: 941  VMVTTNQEGLKFVKVRMRSTRIPQIGDKFASRHGQKGTIGMTYRHEDMPFSAQGIVPDII 1000

Query: 952  INPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFS 1011
            INPHA PSR T   L+E  L K ++AL     SG +  ATPF   +V+A+++ L   GF 
Sbjct: 1001 INPHAIPSRMTVAHLVECQLSK-VSAL-----SGFEGDATPFTDVTVEAVSKLLRSHGFQ 1054

Query: 1012 KWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRF 1071
              G E +Y G TG  + + +F+GPT+YQRL H+ +DK+  R  GPV  LTRQPV  R R 
Sbjct: 1055 SRGFEVMYHGHTGRKLVAQVFLGPTYYQRLKHLVDDKIHARARGPVQILTRQPVEGRSRD 1114

Query: 1072 GGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRG 1131
            GG++FGEMERDC I+HG ++ L ERLF  SD+Y++ +C  C  +A           K   
Sbjct: 1115 GGLRFGEMERDCQISHGCSSVLRERLFDCSDAYRVIVCDICGLIAI-------ASYKKDS 1167

Query: 1132 PYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
              CR C +     +  +PY AKLL QEL SM I  +  T+
Sbjct: 1168 YECRSCQNRTRFSQVYLPYAAKLLFQELMSMNIAPRLFTK 1207


>gi|50303683|ref|XP_451784.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49640916|emb|CAH02177.1| KLLA0B05577p [Kluyveromyces lactis]
          Length = 1221

 Score =  633 bits (1632), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 420/1222 (34%), Positives = 631/1222 (51%), Gaps = 117/1222 (9%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +FF E GLVS Q++S+N+FI   +Q         I+E     + + +   R   + FG++
Sbjct: 30   AFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQHTTETDNISRKYEISFGKI 89

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             L KPS    +G   H M+P+ ARL+N+TY+S + V++Q + Y    +     K      
Sbjct: 90   YLAKPSMTESDGV-SHAMYPQEARLRNLTYASGLFVEIQKRTYQAIDIPGRDLKYEIIT- 147

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGAEKVF 205
             ++   ++E   I IGR+P+M++S  C +  + + D      C FD GGYFII G+EKV 
Sbjct: 148  -EESEENEENNKIFIGRVPIMLRSKYCLLDDLTESDLYRLKECPFDMGGYFIINGSEKVL 206

Query: 206  VAQEQICLKRLWV-SNSMGWTVAYKSE-----NKRNRLIVRL-VDMSKFEDIKGGEKVLS 258
            +AQE+     + V   S    +++ +E      K +R I  L V +   E         +
Sbjct: 207  IAQERSAGNIVQVFKKSAPSPISHIAEIRSALEKGSRFISTLQVKLYGREGSTSRTIKAT 266

Query: 259  VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGR 318
            + ++  +IPI I+F ALG+  D EI+  I +   D  +L +L   + +     D      
Sbjct: 267  LPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEEGFVIQDR----E 322

Query: 319  NALKYVDKLIKGTTFPPGES-----TEECMNTYLFP---SLHG-TKQKARFLGYMVKCLL 369
             AL ++ +  +GT     +       ++ +     P    L G   +KA FLGYM+  LL
Sbjct: 323  TALDFIGR--RGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLL 380

Query: 370  QAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIE 429
                 R+  D+RD F  KRL+LAG LL +  K       + + + +QR +   +    ++
Sbjct: 381  LCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVEEAKDFN-LK 439

Query: 430  YYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYT 489
              + A+ +T GL  A +TG W    K     +G+   L R     TL  LRRT   +   
Sbjct: 440  LAVKATTITAGLKYALATGNWGEQKKSMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRD 499

Query: 490  GKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEK 548
            GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S      PI   L   GME 
Sbjct: 500  GKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPLPIITFLNEWGMEP 559

Query: 549  LADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVR 608
            L D   +      +VFV+G W G+ ++    V  +R+ RR+ ++  +V I RD  + E++
Sbjct: 560  LEDYIPHQSPDATRVFVNGVWHGIHRNPAKLVDTIRKLRRKGDITPEVSIVRDIREKELK 619

Query: 609  IFMDAGRILRPLLVVEN------------MGKIKSL---------------EGKNYTFQA 641
            IF DAGR+ RPL +V+              G ++ L               E  NYT+ +
Sbjct: 620  IFTDAGRVYRPLFIVDENPETGRKELKVKKGHVRKLMLTEYQDIEGGFDDEEEMNYTWTS 679

Query: 642  LLDHGIIELVGTEEEEDCCTAWGIKYL------LKDIEDK-KPIK----------FTHCE 684
            LL+ G++E +  EEEE    A   + L      + D ED   P +          FTHCE
Sbjct: 680  LLNEGLVEYIDAEEEETILIAMQHEDLDPALLPVADSEDDLDPARRIRAIHNSNIFTHCE 739

Query: 685  LDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQR 744
            +  S +LG++  +IPF +H+ + R  YQS     QA+G   TN ++R+DT+++ L+YPQ+
Sbjct: 740  IHPSMILGVAASVIPFPDHNQSPRNTYQS-AMGKQAMGVFLTNYNVRMDTMANILYYPQK 798

Query: 745  PLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGM 804
            PL  T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+
Sbjct: 799  PLGTTRAME-----------YLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGL 847

Query: 805  FRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGD 864
            FRS   RSY  +     M +   S +       ++ K G  D LDDDG    G  +   D
Sbjct: 848  FRSLFFRSYMDQEKRIGMSITE-SFEKPHRTNTLRMKHGTYDKLDDDGLIAPGVRVSGDD 906

Query: 865  IVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLR 909
            ++IGK                  S  D S  L+ TE G+V +V++++N +G  F  V +R
Sbjct: 907  MIIGKTTPIPPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRVR 966

Query: 910  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEA 969
              + P +GDKF+S HGQKG +G     E+ PFT +G+VPD++INPHA PSR T   L+E 
Sbjct: 967  TTKIPQIGDKFASRHGQKGTIGITYRTEDMPFTAEGVVPDLIINPHAIPSRMTVAHLIEC 1026

Query: 970  ALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRS 1029
             L K +AAL     SG +  A+PF   +VD I+  L   G+   G E +Y+G TG+ + +
Sbjct: 1027 LLSK-VAAL-----SGNEGDASPFTDITVDGISRLLREHGYQSRGFEVMYNGHTGKKLMA 1080

Query: 1030 LIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA 1089
             IF GPT+YQRL HM +DK+  R  GP+  LTRQPV  R R GG++FGEMERDC+IAHGA
Sbjct: 1081 QIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGA 1140

Query: 1090 AANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVP 1149
            AA L ERL   SD++++HIC  C  + +V+ ++     K     CR C +  DI + ++P
Sbjct: 1141 AAFLKERLMEASDAFRVHICGIC-GLMSVVAKL-----KHNQFECRSCKNKIDIYQVHIP 1194

Query: 1150 YGAKLLCQELFSMGITLKFDTE 1171
            Y AKLL QEL +M I  +  T+
Sbjct: 1195 YAAKLLFQELMAMNIAPRLYTD 1216


>gi|50293059|ref|XP_448959.1| hypothetical protein [Candida glabrata CBS 138]
 gi|51701949|sp|Q6FLD5.1|RPB2_CANGA RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2
 gi|49528272|emb|CAG61929.1| unnamed protein product [Candida glabrata]
          Length = 1223

 Score =  633 bits (1632), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 421/1224 (34%), Positives = 634/1224 (51%), Gaps = 123/1224 (10%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +FF E GLVS Q++S+N+F+   LQ         I+E     + + +   R   + FG++
Sbjct: 34   AFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHTTEQDNISRKYEISFGKI 93

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             + KP     +G   H ++P+ ARL+N+TYSS + V V  + Y    V       GR+  
Sbjct: 94   YVTKPMVNESDGV-THALYPQEARLRNLTYSSGLFVDVTKRTYEAVDVP------GRDLN 146

Query: 152  IQ----KEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGA 201
             Q    +     E+  + IGR+P+M++S  C++    + D      C FD GGYFII G+
Sbjct: 147  YQLIAEESEEDSESGKVFIGRLPIMLRSKNCYLSDATESDLYKLKECPFDMGGYFIINGS 206

Query: 202  EKVFVAQEQICLKRLWVSNSMGWT-VAYKSE-----NKRNRLIVRL-VDMSKFEDIKGGE 254
            EKV +AQE+     + V      + +++ +E      K +R I  L V +   E      
Sbjct: 207  EKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGRESSSART 266

Query: 255  KVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEF 314
               ++ ++  +IPI I+F ALG+  D EI+  I +   D  +L +L   + D     D  
Sbjct: 267  IKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFVIQDR- 325

Query: 315  RKGRNALKYVDKLIKGTTFPPGES-----TEECMNTYLFP---SLHG-TKQKARFLGYMV 365
                 AL ++ +  +GT     +       ++ +     P    L G   +KA FLGYM+
Sbjct: 326  ---ETALDFIGR--RGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMI 380

Query: 366  KCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTV 425
              LL     R+  D+RD F  KRL+LAG LL +  K       K + + +QR +      
Sbjct: 381  NRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTKDIFRYMQRTVEEANDF 440

Query: 426  RPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQ 485
              ++  ++A  +T+GL  A +TG W    K     +G+   L R     TL  LRRT   
Sbjct: 441  N-MKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTP 499

Query: 486  VQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-LEPIFEQLFNS 544
            +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S      PI   L   
Sbjct: 500  IGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGADPMPIITFLSEW 559

Query: 545  GMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQ 604
            GME L D   +      +VFV+G W GV ++    +  LR  RR+ ++  +V + RD  +
Sbjct: 560  GMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIRDIRE 619

Query: 605  SEVRIFMDAGRILRPLLVVEN---------------MGKIKSLE----------GKNYTF 639
             E++IF DAGR+ RPL +VE+               + K+ + E           ++YT+
Sbjct: 620  QELKIFTDAGRVYRPLFIVEDDEELGRKELKVRKGHVAKLMATEYQDIEGGFEDAEDYTW 679

Query: 640  QALLDHGIIELVGTEEEEDCCTAWGIKYL----------LKDIEDKKPIK-------FTH 682
             +LL+ G++E +  EEEE    A   + L           ++++  K IK       FTH
Sbjct: 680  SSLLNEGLVEYIDAEEEESILIAMQPEDLEPTAVEQDIPKENVDLAKRIKVTHHATTFTH 739

Query: 683  CELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYP 742
            CE+  S +LG++  IIPF +H+ + R  YQS     QA+G   TN + R+DT+++ L+YP
Sbjct: 740  CEIHPSMILGVAASIIPFPDHNQSPRNTYQS-AMGKQAMGVFLTNYNFRMDTMANILYYP 798

Query: 743  QRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLER 802
            Q+PL  T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++S++R
Sbjct: 799  QKPLGTTRAME-----------YLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDR 847

Query: 803  GMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQS 862
            G+FRS   RSY  +     M +   + +       ++ K G  D LD+DG    G  +  
Sbjct: 848  GLFRSLFFRSYMDQEKKYGMSITE-TFEKPQRTNTLRMKHGTYDKLDEDGLIAPGVRVSG 906

Query: 863  GDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVS 907
             DI+IGK                  S  D S  L+ TE G+V +V++++N DG  F  V 
Sbjct: 907  EDIIIGKTTPIAPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQDGLKFVKVR 966

Query: 908  LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLL 967
            +R  + P +GDKF+S HGQKG +G    +E+ PFT +GIVPD++INPHA PSR T   L+
Sbjct: 967  VRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLI 1026

Query: 968  EAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMV 1027
            E  L K +AAL     SG +  A+PF   +V+ I++ L   G+   G E +Y+G TG+ +
Sbjct: 1027 ECLLSK-VAAL-----SGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKL 1080

Query: 1028 RSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAH 1087
             + IF GPT+YQRL HM +DK+  R  GP+  LTRQPV  R R GG++FGEMERDC+IAH
Sbjct: 1081 MAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAH 1140

Query: 1088 GAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKAN 1147
            GAAA L ERL   SD++++HIC  C  + +VI ++     +     C+ CD+  DI + +
Sbjct: 1141 GAAAFLKERLMEASDAFRVHICGIC-GLMSVIAKLNHNQFE-----CKGCDNKIDIYQIH 1194

Query: 1148 VPYGAKLLCQELFSMGITLKFDTE 1171
            +PY AKLL QEL +M IT +  T+
Sbjct: 1195 IPYAAKLLFQELMAMNITPRLYTD 1218


>gi|428180722|gb|EKX49588.1| hypothetical protein GUITHDRAFT_159421 [Guillardia theta CCMP2712]
          Length = 1185

 Score =  632 bits (1631), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 423/1204 (35%), Positives = 627/1204 (52%), Gaps = 113/1204 (9%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFG---ETIVEPGYDPSKKGEGEWRYASMRFG 89
            +F+E GLV  Q  SYNEFI   +Q+  + +    E I  P Y P  K + + +   + FG
Sbjct: 22   YFDENGLVQQQRASYNEFILQNVQEVIEDYKGQIEVIATPQYKPGTKQDYKQK-IQVDFG 80

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
            +V + +P+     G  E  + P  ARL+ +TYS ++ V +  + Y   +V SD    G E
Sbjct: 81   RVRIAQPNITEVEGRKER-LLPYMARLRKLTYSCQLFVDITLRKY---KVASD----GSE 132

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
            Q        DE   + +G++PVM++S++C + G      ++  +C  D GGYF+I G+EK
Sbjct: 133  QLDN----IDEHERVPLGKVPVMLRSEVCRLFGKYNKDIMDLKECPQDQGGYFVINGSEK 188

Query: 204  VFVAQEQICLKRLWVSNSMGWTVAYKSE-----NKRNR----LIVRLVDMSKFEDIKGGE 254
            V +AQE+     ++V        AY +E      K N+    L ++L +        G  
Sbjct: 189  VLLAQERRANNLVFVFKKTLGKFAYVAEVGSQVEKGNKPPSTLYMKLWNRENNARF-GAS 247

Query: 255  KVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEF 314
             VL++ ++  EIPI I+F ALG+ SD+EI+  I +  +D  ++  L  S+ +A    D  
Sbjct: 248  VVLTLPYVRKEIPIVIVFRALGIESDREILEHIVYNLKDVQMMEALRPSLDEAAQGKD-L 306

Query: 315  RKGRNALKYVDKLIKGTTFPPGESTEECMNTY---LFPSLHGTKQ----KARFLGYMVKC 367
                 AL Y+ +   G T       +   +     L P +  T++    K  FLGY+   
Sbjct: 307  STREAALDYIGRRALGMTTSRENRIQHAHDILIRELLPHIGITEESLTKKQYFLGYVCNR 366

Query: 368  LLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRP 427
            LL    GRR+ D+RD + NKR+++AG LL    K       K   K+LQ  L   + V  
Sbjct: 367  LLACSLGRRQPDDRDHYGNKRVDMAGPLLAGLFKGCFKRLVKEFRKSLQDSLDNGKEVN- 425

Query: 428  IEYYLDASILTNGLSRAFSTGAW---SHPFKRTERISGIVANLGRANPLQTLVDLRRTRQ 484
            +        +T G+    +TG W             +G+   L R      L  LRR   
Sbjct: 426  MNTAFKQDFITKGIKYCMATGNWGVGKAAVAGQATRTGVSQVLSRLTFAAALSHLRRANT 485

Query: 485  QVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTS-ILEPIFEQLFN 543
             +   GK+   R  H + WG +C   TP+G+ CGLVKNL +   VS     + I E L  
Sbjct: 486  PIGKEGKIAQPRQLHNTQWGVVCPAETPEGQACGLVKNLSLMTYVSVGGASQVIIELLQA 545

Query: 544  SGMEKLADDASYSL--GGKF-KVFVDGDWIGVCKDSLSFVSELRRKRRRKE---LPTQVE 597
             GME+L + AS ++    +F KVFV+G W+G+  D  +  + LR +RR      +  +V 
Sbjct: 546  GGMEELEELASPAICASSRFSKVFVNGVWVGMTDDPDNLANTLREQRREMTIGGMIHEVG 605

Query: 598  IKRDELQSEVRIFMDAGRILRPLLVVE------NMGK---IKSLEGKNYTFQALLDHGII 648
            + RD  + E+ I  D GR++RPLL+V+      N+ +   I   + +  T+  +L  G I
Sbjct: 606  VARDIGERELFISTDYGRLMRPLLIVDKETGFLNLKRSNIIHMTQNEQTTWSEILRKGFI 665

Query: 649  ELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARR 708
            E +   EEE C  A     L+KD+      ++THCE+  + +LG+   IIPF +H+ + R
Sbjct: 666  EYIDVMEEETCYIAM----LVKDVGSNDLYQYTHCEIHPAMILGVCASIIPFPDHNQSPR 721

Query: 709  VLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPR 768
              YQS     QA+G   TN  +R+DTL+H L+YPQ+PL +T   D            L  
Sbjct: 722  NTYQS-AMGKQAMGIYATNYQVRIDTLAHVLYYPQKPLVKTHSMD-----------YLKF 769

Query: 769  PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEM----QV 824
             EL  GQN IVA+ V+ GYNQEDSL+M+++S++RGMFRS   RSY  E   + +    Q 
Sbjct: 770  RELPAGQNLIVAIAVYSGYNQEDSLIMSQSSIDRGMFRSMFYRSYTDEQKTEGVLCLEQF 829

Query: 825  KRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA------DSGA--- 875
            ++   +++   G   S++   D LD DG  F   N++  DI+IGK        DS     
Sbjct: 830  EKPQREEL---GSASSRVN-YDKLDVDGLVFPAQNVEDRDIIIGKTTLVTNSDDSDQAQI 885

Query: 876  ----DHSIKLKHTERGMVQKVVLSSNDD-GKNFSVVSLRQVRSPCLGDKFSSMHGQKGVL 930
                D S +L+H E G+V +V+L++N D G+ F  + +R VR P +GDKF+S HGQKG +
Sbjct: 886  AVKRDSSTRLRHNEHGVVDQVLLTTNSDTGQRFVQIKVRAVRVPQIGDKFASRHGQKGTV 945

Query: 931  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYA 990
            G    Q++ PFT +G+ PD+++NPHA PSR T G L+E  LGK       G  +G +  A
Sbjct: 946  GITYRQDDMPFTSEGVSPDLIVNPHAIPSRMTIGHLIETLLGK------VGCLTGDEGDA 999

Query: 991  TPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVK 1050
            TPF   +V  +++ LH  G+ + G ERLY+G TG  + +L+F GPT+YQRL HM +DK+ 
Sbjct: 1000 TPFNEVNVKDVSDMLHSRGYQRHGNERLYNGHTGRPLTALVFFGPTYYQRLKHMVDDKIH 1059

Query: 1051 FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICR 1110
             R  GP   L RQP+  R R GG++FGEMERDC+IAHG+A  L E+LFT SD Y  HIC+
Sbjct: 1060 SRARGPTQMLNRQPMEGRARDGGLRFGEMERDCMIAHGSANVLREKLFTQSDGYMTHICQ 1119

Query: 1111 KCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
             C    +AN+   +       R P    C +   I    +PY AKLL QEL +M I  + 
Sbjct: 1120 DCGLIAIANLDSNL------YRCPNQATCRNS-SIGMIEIPYAAKLLFQELMAMQIAPRL 1172

Query: 1169 DTEF 1172
             T  
Sbjct: 1173 MTSL 1176


>gi|303315773|ref|XP_003067891.1| DNA-directed RNA polymerase II, putative [Coccidioides posadasii C735
            delta SOWgp]
 gi|240107567|gb|EER25746.1| DNA-directed RNA polymerase II, putative [Coccidioides posadasii C735
            delta SOWgp]
          Length = 1258

 Score =  632 bits (1631), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 428/1261 (33%), Positives = 635/1261 (50%), Gaps = 149/1261 (11%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RY 83
            C     SFF   GLVS Q++S++EFI   +Q+  +  G+  ++    P +        R 
Sbjct: 25   CWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTIAPDEDDPDPVMVRR 84

Query: 84   ASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKR----- 138
              ++FG V L +PS   G+G     M P+ ARL+N+TY+S + + +  ++   +      
Sbjct: 85   YELKFGTVMLARPSMTEGDGATSI-MLPQEARLRNLTYASPLYLGITKKIAEGRERSLAE 143

Query: 139  ---------VTSDKFKTGREQYIQ---KEVLSDET--TNIIIGRIPVMVKSDLCWMKGVE 184
                        D+ +  R  Y+Q   K +  DE    NI IG++P+M+KS  C +K + 
Sbjct: 144  RDEDDDEPDAKGDEERRARGTYLQWEPKALPEDEADEENIFIGKMPIMLKSKYCILKDLG 203

Query: 185  K------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENK 233
            +       +C +D GGYFII G+EKV +AQE+     + V      +   +    +S  +
Sbjct: 204  EHALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAVE 263

Query: 234  RNRLIVRLVDMSKF---EDIKGG--EKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLI 287
            +   I+  + +  F   +  KGG    + S   ++ T+IPI ++F ALGV SD++I+N I
Sbjct: 264  KGSRILSQLSIKLFAKGDSSKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDEDILNHI 323

Query: 288  DFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES----TEECM 343
             +   D  +L +L   I +     D       AL ++ K     T    E       + +
Sbjct: 324  CYDRNDTPMLEMLKPCIEEGFVIQDR----EVALDFISKRGSSPTSMNHEKRVRYARDII 379

Query: 344  NTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERE 399
                 P +  ++    +KA FLGYMV  LLQ   GRR  D+RD F  KRL+LAG LL   
Sbjct: 380  QKEFLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDVDDRDHFGKKRLDLAGPLLANL 439

Query: 400  LKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTER 459
             +V      K + K +QR +  +R +  +   + AS LT GL  A +TG W    K    
Sbjct: 440  FRVLFMRLTKDLYKYVQRCVETNRQLY-LNIGVKASTLTGGLKYALATGNWGEQKKAASS 498

Query: 460  ISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGL 519
             +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGL
Sbjct: 499  KAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGL 558

Query: 520  VKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLS 578
            VKNL +   ++  +  EPI + +    ME L +          K+FV+G W+GV +D   
Sbjct: 559  VKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTKIFVNGVWVGVHRDPSH 618

Query: 579  FVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK---------- 628
             VS ++  RRR  +  +V +  D    E +IF DAGR+ RPL VV+N  K          
Sbjct: 619  LVSTVQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSENSGSLVLT 678

Query: 629  ---IKSLEG---------------KNYTFQALLDHGIIELVGTEEEE-----------DC 659
               I+ LE                + Y +  L+  G++E V  EEEE           + 
Sbjct: 679  KEHIRKLEADKEIPADLDPEERRERYYGWDGLVKSGVVEYVDAEEEETIMIVMSPEDLEV 738

Query: 660  CTAWGIKYLLK-DIED----------KKPIKFTHCELDMSFLLGLSCGIIPFANHDHARR 708
               +   Y+ + D  D          +K   +THCE+  S +LG+   IIPF +H+ + R
Sbjct: 739  SKQYQAGYIPEEDTSDPNRRVRSKLSQKAHTWTHCEIHPSMILGICASIIPFPDHNQSPR 798

Query: 709  VLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPR 768
              YQS     QA+G   TN   R++T+++ L+YPQ+PL  T   +            L  
Sbjct: 799  NTYQS-AMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSME-----------FLKF 846

Query: 769  PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRS 828
             EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y        + V  R 
Sbjct: 847  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERF 906

Query: 829  SDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD---------------S 873
               M +   ++ K G  D +DDDG    G  +   DI+IGK A                +
Sbjct: 907  EKPMRS-DTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPESEELGQRTKQHT 965

Query: 874  GADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
              D S  L+ TE G+V +V++S++++   F  V +R  + P +GDKF+S HGQKG +G  
Sbjct: 966  KLDVSTPLRSTESGIVDQVLVSTSNEDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVT 1025

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRY---A 990
              QE+ PFT +GIVPD++INPHA PSR T   L+E  L K          S L+ Y   A
Sbjct: 1026 FRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSK---------VSSLRGYEGDA 1076

Query: 991  TPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVK 1050
            TPF   +VD+++  L   G+   G E +Y+G TG  + + IF+GPT+YQRL HM +DK+ 
Sbjct: 1077 TPFTDVTVDSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQIFLGPTYYQRLRHMVDDKIH 1136

Query: 1051 FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICR 1110
             R  GP   LTRQPV  R R GG++FGEMERDC+IAHGA+A L ERLF +SD +++HIC 
Sbjct: 1137 ARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRIHICD 1196

Query: 1111 KCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
             C  +   I ++  G  +     CR C + + I + ++PY AKLL QEL SM I  +  T
Sbjct: 1197 IC-GLMTPIAKLKKGDFE-----CRACKNKNKISQVHIPYAAKLLFQELMSMNIAARMYT 1250

Query: 1171 E 1171
            +
Sbjct: 1251 K 1251


>gi|239609658|gb|EEQ86645.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces dermatitidis
            ER-3]
 gi|327357696|gb|EGE86553.1| DNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1258

 Score =  632 bits (1631), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 427/1258 (33%), Positives = 638/1258 (50%), Gaps = 143/1258 (11%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGE--WRY 83
            C     SFF   GLVS Q++S++EFI   +Q+  +  G+  ++    PS+        R 
Sbjct: 25   CWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPSEDEIDPVVLRR 84

Query: 84   ASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT-------- 135
              ++FG V L +PS   G+G     M P+ ARL+N+TY+S + + +  +V          
Sbjct: 85   YELKFGTVMLARPSMTEGDGATSI-MLPQEARLRNLTYASPLYLGITKRVTEGRERLIAE 143

Query: 136  -----QKRVTSDKFKTGREQYIQ---KEVLSDETT--NIIIGRIPVMVKSDLCWMKGVEK 185
                 Q     D+ +  R  Y+    K +  DE    N+ IGR+P+M+KS  C +K + +
Sbjct: 144  RDDAEQGEEDHDEERRSRGTYLHWEPKPLNEDEPEEENVFIGRMPIMLKSKYCILKDLNE 203

Query: 186  ------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKR 234
                   +C +D GGYFII G+EKV +AQE+     + V      +   +    +S  ++
Sbjct: 204  QSLYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAIEK 263

Query: 235  NRLIVRLVDMSKF---EDIKGG--EKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLID 288
               I+  + +  F   +  KGG    + S   ++ T+IPI ++F ALGV SD++I+N I 
Sbjct: 264  GSRILSQLSIKLFGKGDASKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDEDILNHIC 323

Query: 289  FTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES----TEECMN 344
            +   D  +L +L   I +     D       AL ++ K     T    E       + + 
Sbjct: 324  YDRNDTPMLEMLKPCIEEGFVIQDR----EVALDFISKRGSSPTSMNHEKRVRYARDIIQ 379

Query: 345  TYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLEREL 400
                P +  ++    +KA FLGYMV  LLQ   GRR  D+RD F  KRL+LAG LL    
Sbjct: 380  KEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLF 439

Query: 401  KVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERI 460
            ++      K + K +QR +  +R +  +   + AS L+ GL  A +TG W    K     
Sbjct: 440  RILFMRVTKDLYKYVQRCVETNRQLY-LNIGVKASTLSGGLKYALATGNWGEQKKAASSK 498

Query: 461  SGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLV 520
            +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLV
Sbjct: 499  AGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLV 558

Query: 521  KNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSF 579
            KNL +   ++  +  EPI + +    ME L +          KVFV+G W+GV +D    
Sbjct: 559  KNLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNATKVFVNGVWVGVHRDPSHL 618

Query: 580  VSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK----------- 628
            V+ ++  RRR  +  +V + RD    E +IF DAGR+ RPL VVEN  K           
Sbjct: 619  VNTVQSLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVVENDPKSENCGSLVLSK 678

Query: 629  --IKSLEG---------------KNYTFQALLDHGIIELVGTEEEE---------DCCTA 662
              I  LE                + + +  L+  G++E V  EEEE         D  T+
Sbjct: 679  EHIHKLEADKELPPDLDPEERRERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPEDLETS 738

Query: 663  WGIK--YLLKDIEDKKPIK------------FTHCELDMSFLLGLSCGIIPFANHDHARR 708
              ++  + L + ++  P +            +THCE+  S +LG+   IIPF +H+ + R
Sbjct: 739  KQLQAGFSLPEEDNNDPNRRVRSTLSQKTHTWTHCEIHPSMILGICASIIPFPDHNQSPR 798

Query: 709  VLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPR 768
              YQ+     QA+G   TN   R++T+++ L+YPQ+PL  T   +            L  
Sbjct: 799  NTYQA-AMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSME-----------FLKF 846

Query: 769  PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRS 828
             EL  GQN+IVA+  + GYNQEDS++MN++S++RG+FRS   R+Y        M V  R 
Sbjct: 847  RELPAGQNSIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGMTVVERF 906

Query: 829  SDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD---------------S 873
               M +   ++ K G  D +DDDG    G  +   DI+IGK A                +
Sbjct: 907  EKPMRS-DTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKQHT 965

Query: 874  GADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
              D S  L+ TE G+V +V++S+++D   F  V +R  + P +GDKF+S HGQKG +G  
Sbjct: 966  KLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 1025

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
              QE+ PFT +GIVPD++INPHA PSR T   L+E  L K +++L      G +  ATPF
Sbjct: 1026 YRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSK-VSSL-----RGFEGDATPF 1079

Query: 994  ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
               +VD+I+  L   G+   G E +Y+G TG  + + +F+GPT+YQRL HM +DK+  R 
Sbjct: 1080 TDVTVDSISSLLREHGYQSRGFEVMYNGYTGRKLVAQVFLGPTYYQRLRHMVDDKIHARA 1139

Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
             GP   LTRQPV  R R GG++FGEMERDC+IAHGA+A L ERLF +SD +++HIC  C 
Sbjct: 1140 RGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDICG 1199

Query: 1114 NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
             +  + +       K     CR C + + I + ++PY AKLL QEL SM I  +  T+
Sbjct: 1200 LMTPIAK------LKKSDFECRACKNKNKISQVHIPYAAKLLFQELMSMNIAARLFTK 1251


>gi|425773185|gb|EKV11554.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
 gi|425778788|gb|EKV16893.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
          Length = 1255

 Score =  632 bits (1631), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 426/1265 (33%), Positives = 640/1265 (50%), Gaps = 160/1265 (12%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGE---WR 82
            C     SFF+  GLVS Q++S++EFI + +Q+  +  G+ +++    PS+  E E    R
Sbjct: 25   CWTVITSFFDSKGLVSQQLDSFDEFISSTMQELVEEQGQVVLDQTLPPSED-EIEPIVVR 83

Query: 83   YASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKR---- 138
               ++FG V L +PS   G+G     M P+ ARL+N+TY+S + + V  ++   +     
Sbjct: 84   RYELKFGTVMLSRPSVTEGDGATTI-MLPQEARLRNLTYASPLYLGVTKKIMEGRERMGK 142

Query: 139  -------------VTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK 185
                          T   +     + + +E + +ET  + IG++P+M+KS  C +K +  
Sbjct: 143  PNDDDDNDGETDPKTQGTYLEWETKQLPQEQMKEET--VFIGKMPIMLKSKYCILKDLND 200

Query: 186  G------DCDFDHGGYFIIKGAEKVFVAQEQIC------LKRLWVSNSMGWTVAYKSENK 233
                   +C +D GGYF+I G+EKV +AQE+         K+   S +        +  K
Sbjct: 201  ASLYAWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYIAEIRSAVEK 260

Query: 234  RNRLIVRLVD--MSKFEDIKGG--EKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLID 288
             +R++  L     +K +  KGG    + S   ++  +IPI ++F ALGV SD++I+N I 
Sbjct: 261  GSRMLSSLTLKLFAKGDSAKGGFGPTIRSTLPYVKADIPIVVVFRALGVVSDEDILNHIC 320

Query: 289  FTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES------TEEC 342
            +   D  +L +L   I +     D       AL ++ K  +G++              + 
Sbjct: 321  YDRNDTPMLEMLKPCIEEGFVIQDR----EVALDFIAK--RGSSQSNLNHDRRVRYARDI 374

Query: 343  MNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLER 398
            M   L P +  ++    +KA FLGYMV  LLQ   GRR  D+RD F  KRL+LAG LL  
Sbjct: 375  MQKELLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLAS 434

Query: 399  ELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLD----ASILTNGLSRAFSTGAWSHPF 454
              +       K + + +QR +  +R     E YL+    AS LT GL  A +TG W    
Sbjct: 435  LFRTLFTRVTKDLQRYVQRCVETNR-----EIYLNIGIKASTLTGGLKYALATGNWGEQK 489

Query: 455  KRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDG 514
            K     +G+   L R     +L  LRRT   +   GK+   R  H +HWG +C   TP+G
Sbjct: 490  KAASAKAGVSQVLSRYTFSSSLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEG 549

Query: 515  ENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVC 573
            + CGLVKNL +   ++  +  EPI + +    ME L +          KVFV+G W+G+ 
Sbjct: 550  QACGLVKNLALMCYITVGTPAEPIVDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVGIH 609

Query: 574  KDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK----- 628
            +D    V+ ++  RRR  +  +V + RD  + E +IF D GR+ RPL V++N  K     
Sbjct: 610  RDPSHLVTTMQNLRRRNMISHEVSLIRDIREREFKIFTDTGRVCRPLFVIDNDPKSENSG 669

Query: 629  --------IKSLEG---------------KNYTFQALLDHGIIELVGTEEEEDCCTAWGI 665
                    I+ LE                + + +  L+  G +E V  EEEE        
Sbjct: 670  GLVLNKEHIRKLEADKDLPPDLGPEERREQYFGWDGLVRSGAVEYVDAEEEETIMIVMTP 729

Query: 666  K-----------YLLKDIEDKKPIK------------FTHCELDMSFLLGLSCGIIPFAN 702
            +           Y L + E   P K            +THCE+  S +LG+   IIPF +
Sbjct: 730  EDLEISRQLQAGYALPEDETSDPNKRVRSILSQRAHTWTHCEIHPSMILGVCASIIPFPD 789

Query: 703  HDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGH 762
            H+ + R  YQS     QA+G   TN S R++T+++ L+YPQ+PL  T   +         
Sbjct: 790  HNQSPRNTYQS-AMGKQAMGVFLTNFSQRMETMANILYYPQKPLATTRSME--------- 839

Query: 763  NHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEM 822
               L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y        +
Sbjct: 840  --FLRFRELPAGQNAIVAIATYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYADTEKMVGL 897

Query: 823  QVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH----- 877
            QV  R    M     +  + G  D LD+DG    G  +   DI+IGK A   AD      
Sbjct: 898  QVVERFEKPM-RIDTLGMRKGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPLAADAEELGQ 956

Query: 878  ----------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQK 927
                      S  L+ TE G+V +V++S+ +D   F  V +R  + P +GDKF+S HGQK
Sbjct: 957  RTKAHTKIDVSTPLRSTENGIVDQVLVSTGNDDLKFVKVRMRTTKIPQIGDKFASRHGQK 1016

Query: 928  GVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLK 987
            G +G    QE+ PFT +G+VPD++INPHA PSR T   L+E  L K ++AL      G +
Sbjct: 1017 GTIGITYRQEDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLSK-VSAL-----RGFE 1070

Query: 988  RYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSED 1047
              ATPF   +VD+++  L   G+   G E +++G TG  + + +F+GPT+YQRL HM +D
Sbjct: 1071 GDATPFTDVTVDSVSRLLREHGYQSRGFEVMFNGHTGRKMVAQVFLGPTYYQRLRHMVDD 1130

Query: 1048 KVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMH 1107
            K+  R  GP   LTRQPV  R R GG++FGEMERDC+IAHGA+A L ERLF +SD +++H
Sbjct: 1131 KIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVH 1190

Query: 1108 ICRKCKNVANVIQRVVGGGRKVRGPY-CRICDSGDDIVKANVPYGAKLLCQELFSMGITL 1166
            IC  C  +  V        +  +G + CR+C++   I + ++PY AKLL QEL SM I  
Sbjct: 1191 ICDDCGLMTPV-------AKLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELASMNIAA 1243

Query: 1167 KFDTE 1171
            +  T+
Sbjct: 1244 RMFTD 1248


>gi|261196850|ref|XP_002624828.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces dermatitidis
            SLH14081]
 gi|239596073|gb|EEQ78654.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces dermatitidis
            SLH14081]
          Length = 1258

 Score =  632 bits (1630), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 427/1258 (33%), Positives = 638/1258 (50%), Gaps = 143/1258 (11%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGE--WRY 83
            C     SFF   GLVS Q++S++EFI   +Q+  +  G+  ++    PS+        R 
Sbjct: 25   CWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPSEDEIDPVVLRR 84

Query: 84   ASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT-------- 135
              ++FG V L +PS   G+G     M P+ ARL+N+TY+S + + +  +V          
Sbjct: 85   YELKFGTVMLARPSMTEGDGATSI-MLPQEARLRNLTYASPLYLGITKRVTEGRERLIAE 143

Query: 136  -----QKRVTSDKFKTGREQYIQ---KEVLSDETT--NIIIGRIPVMVKSDLCWMKGVEK 185
                 Q     D+ +  R  Y+    K +  DE    N+ IGR+P+M+KS  C +K + +
Sbjct: 144  RDDAEQGEEDHDEERRSRGTYLHWEPKPLNEDEPEEENVFIGRMPIMLKSKYCILKDLNE 203

Query: 186  ------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKR 234
                   +C +D GGYFII G+EKV +AQE+     + V      +   +    +S  ++
Sbjct: 204  QSLYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAIEK 263

Query: 235  NRLIVRLVDMSKF---EDIKGG--EKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLID 288
               I+  + +  F   +  KGG    + S   ++ T+IPI ++F ALGV SD++I+N I 
Sbjct: 264  GSRILSQLSIKLFGKGDASKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDEDILNHIC 323

Query: 289  FTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES----TEECMN 344
            +   D  +L +L   I +     D       AL ++ K     T    E       + + 
Sbjct: 324  YDRNDTPMLEMLKPCIEEGFVIQDR----EVALDFISKRGSSPTSMNHEKRVRYARDIIQ 379

Query: 345  TYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLEREL 400
                P +  ++    +KA FLGYMV  LLQ   GRR  D+RD F  KRL+LAG LL    
Sbjct: 380  KEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLF 439

Query: 401  KVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERI 460
            ++      K + K +QR +  +R +  +   + AS L+ GL  A +TG W    K     
Sbjct: 440  RILFMRVTKDLYKYVQRCVETNRQLY-LNIGVKASTLSGGLKYALATGNWGEQKKAASSK 498

Query: 461  SGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLV 520
            +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLV
Sbjct: 499  AGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLV 558

Query: 521  KNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSF 579
            KNL +   ++  +  EPI + +    ME L +          KVFV+G W+GV +D    
Sbjct: 559  KNLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNATKVFVNGVWVGVHRDPSHL 618

Query: 580  VSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK----------- 628
            V+ ++  RRR  +  +V + RD    E +IF DAGR+ RPL VVEN  K           
Sbjct: 619  VNTVQSLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVVENDPKSENCGSLVLSK 678

Query: 629  --IKSLEG---------------KNYTFQALLDHGIIELVGTEEEE---------DCCTA 662
              I  LE                + + +  L+  G++E V  EEEE         D  T+
Sbjct: 679  EHIHKLEADKELPPDLDPEERRERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPEDLETS 738

Query: 663  WGIK--YLLKDIEDKKPIK------------FTHCELDMSFLLGLSCGIIPFANHDHARR 708
              ++  + L + ++  P +            +THCE+  S +LG+   IIPF +H+ + R
Sbjct: 739  KQLQAGFSLPEEDNNDPNRRVRSTLSQKTHTWTHCEIHPSMILGICASIIPFPDHNQSPR 798

Query: 709  VLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPR 768
              YQ+     QA+G   TN   R++T+++ L+YPQ+PL  T   +            L  
Sbjct: 799  NTYQA-AMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSME-----------FLKF 846

Query: 769  PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRS 828
             EL  GQN+IVA+  + GYNQEDS++MN++S++RG+FRS   R+Y        M V  R 
Sbjct: 847  RELPAGQNSIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGMTVVERF 906

Query: 829  SDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD---------------S 873
               M +   ++ K G  D +DDDG    G  +   DI+IGK A                +
Sbjct: 907  EKPMRS-DTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKQHT 965

Query: 874  GADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
              D S  L+ TE G+V +V++S+++D   F  V +R  + P +GDKF+S HGQKG +G  
Sbjct: 966  KLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 1025

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
              QE+ PFT +GIVPD++INPHA PSR T   L+E  L K +++L      G +  ATPF
Sbjct: 1026 YRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSK-VSSL-----RGFEGDATPF 1079

Query: 994  ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
               +VD+I+  L   G+   G E +Y+G TG  + + +F+GPT+YQRL HM +DK+  R 
Sbjct: 1080 TDVTVDSISSLLREHGYQSRGFEVMYNGYTGRKLVAQVFLGPTYYQRLRHMVDDKIHARA 1139

Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
             GP   LTRQPV  R R GG++FGEMERDC+IAHGA+A L ERLF +SD +++HIC  C 
Sbjct: 1140 RGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDICG 1199

Query: 1114 NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
             +  + +       K     CR C + + I + ++PY AKLL QEL SM I  +  T+
Sbjct: 1200 LMTPIAK------LKKSDFECRACKNKNKISQVHIPYAAKLLFQELMSMNIAARLFTK 1251


>gi|219116262|ref|XP_002178926.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409693|gb|EEC49624.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1212

 Score =  632 bits (1630), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 414/1212 (34%), Positives = 625/1212 (51%), Gaps = 117/1212 (9%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP------GYDPS---KKGEGEWR 82
            ++F E GLV  Q++S++EFI+N +Q+  D  G+  V P      GYD     ++ E E +
Sbjct: 37   AYFEEKGLVRQQLDSFDEFIQNTMQELVDDSGDIRVSPEIQHMVGYDDEAYDREQEKETK 96

Query: 83   YA-SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKV---QFQVYTQKR 138
            +   + FGQV L KP+    +G    +MFP  ARL+NMTYS+ + V V   Q+QV  +  
Sbjct: 97   FVFEIHFGQVYLSKPTTVEKDGTIT-NMFPHEARLRNMTYSAPLYVDVDLNQYQVGREVN 155

Query: 139  VTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDH 192
            V       G      + V ++      +G +P+M++S  C +   +       G+C +D 
Sbjct: 156  VNDPSEDLG------EPVATEHAKKEFLGYVPIMLRSLFCVLSDKDDADLSDLGECVYDQ 209

Query: 193  GGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKRNRLIVRLVDMSKF 247
            GGYF+I G+EKV +AQE++    ++       +   W +  +S+ + +   V  + +  +
Sbjct: 210  GGYFVINGSEKVIIAQERLSNNHVYAFKKKQPSKFSWVIETRSQVENSTRPVSTLYIQMY 269

Query: 248  ED-----IKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFA 302
                   I+G +   ++ ++ T+IP+ I+F ALG  +D++I+  + +   D  ++++   
Sbjct: 270  HKGGRGAIEGNQIRSTLPYIRTDIPVVIIFRALGYVADRDIIEHVVYDLTDGEMMDLFRP 329

Query: 303  SIHDA------DNKCDEF-RKG-------RNALKYVDKLIKGTTFPPGESTEECMNTYLF 348
            S+ +A      D   D   R+G        + ++Y   +++    P   + E C      
Sbjct: 330  SLEEAFVIQRQDVALDFIGRRGSARDVTKEDRMRYAQAILQKEVLPHVGTEEHC------ 383

Query: 349  PSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHAR 408
                   +K  F+GY V  LL    GR + D+RD F  KRL+LAG LL    +V      
Sbjct: 384  -----ETKKGFFIGYAVHKLLMCRLGRAEEDDRDHFGKKRLDLAGPLLGGLFRVLFRKLT 438

Query: 409  KRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLG 468
            K + K LQR L   +    I   + ++ +T+GL  + +TG W      T+  +G+   L 
Sbjct: 439  KDVRKHLQRCLDEGKHFN-IGAAIKSNHITDGLKYSLATGNWGDKGMATK--AGVSQVLN 495

Query: 469  RANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGL 528
            R     +L  LRR    +  TGK    R  H +HWG +C   TP+G+  GLVKNL +   
Sbjct: 496  RLTYASSLSHLRRCNTPLARTGKQAKPRQLHNTHWGMVCPAETPEGQAVGLVKNLALMAY 555

Query: 529  VSTSILE-PIFEQLFNSGMEKLADDASYSLG--GKFKVFVDGDWIGVCKDSLSFVSELRR 585
            ++T   + P+ E L     E L D     +      K+FV+G+W+G+ +D  +     R 
Sbjct: 556  ITTGTAQVPVLEFLEEFSTENLTDILPSVIAEPNTCKIFVNGNWVGIHRDPKALEETFRS 615

Query: 586  KRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMG------KIKSLEG----- 634
             RR  ++  +V I RD    EVRI+ DAGRI RPL VV+          I  L+G     
Sbjct: 616  LRRMVDIDAEVSIVRDIADKEVRIYTDAGRICRPLFVVQEQKLAIKKHHIMQLQGMDPNE 675

Query: 635  KNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLS 694
            K  T+  LL  G++E + TEEEE   T   ++    D +D     +THCE+  S +LG+ 
Sbjct: 676  KKLTWTDLLMEGLVEYIDTEEEE--TTMVAMEPNDLDSDDSYSSTYTHCEIHPSMILGVC 733

Query: 695  CGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDC 754
              IIPF +H+ + R  YQS     QA+G   +N  +R+DT++H L YPQ+PL  T   + 
Sbjct: 734  ASIIPFPDHNQSPRNTYQSAM-GKQAMGIYASNYQVRMDTMAHVLHYPQKPLCTTRAMEF 792

Query: 755  LGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYK 814
            L      H   LP     +G N IV + V+ GYNQEDSL++N+++++RG+FRS + R Y 
Sbjct: 793  L------HFRELP-----SGVNCIVGILVYTGYNQEDSLILNQSAIDRGLFRSSYYRCYI 841

Query: 815  AEVDNKEMQVKRRSSDDMVNFGKIQS----KIGRVDSLDDDGFPFIGANLQSGDIVIGKY 870
             +     +      + ++     + S    K G    LDDDG    G  +   D++IGK 
Sbjct: 842  DQEKASTVGTIGSLTSELFEKPSMDSTRGMKHGEYGKLDDDGLVAPGTRVSGDDVLIGKT 901

Query: 871  ADSGA-----------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDK 919
            A   A           D S  +K  E G+V  V++S+  +G  F+ V +R VR+P +GDK
Sbjct: 902  APIDATAGMPSRYSKRDCSTSMKANEHGIVDNVLISTTKEGYRFTKVRIRNVRTPQIGDK 961

Query: 920  FSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALG 979
            F+S HGQKG +G    QE+ PFT++GIVPDI++NPHA PSR T  QL+E  LGK +   G
Sbjct: 962  FASRHGQKGTIGMTYRQEDMPFTVEGIVPDIIVNPHAIPSRMTIAQLIECLLGKVVVFQG 1021

Query: 980  KGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQ 1039
               C G    ATPF   +V+ I+ +LH  G+ + G E LY G TG  + + +FIGPTFYQ
Sbjct: 1022 ---CEG---DATPFTDVTVEDISTRLHAMGYQRHGNEALYQGHTGRPLNARVFIGPTFYQ 1075

Query: 1040 RLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFT 1099
            RL H+ +DKV  R  GPV  LTRQP+  R R GG++ GEMERDCLI HG A  + +R F 
Sbjct: 1076 RLKHLVDDKVHSRARGPVAMLTRQPLEGRSRDGGLRMGEMERDCLITHGCANFMRDRFFV 1135

Query: 1100 LSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQEL 1159
             SD Y++HIC +C   A    + +    + R P C        I +  +PY AKLL QEL
Sbjct: 1136 NSDQYRIHICERCGLTAQANLKKM--TYECRSPMC--VGRPTQICQVEIPYAAKLLLQEL 1191

Query: 1160 FSMGITLKFDTE 1171
             SM I  +  T+
Sbjct: 1192 NSMCIQTRIYTK 1203


>gi|84996571|ref|XP_953007.1| DNA-directed RNA polymerase II subunit [Theileria annulata strain
            Ankara]
 gi|65304003|emb|CAI76382.1| DNA-directed RNA polymerase II subunit, putative [Theileria annulata]
          Length = 1223

 Score =  632 bits (1629), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 413/1219 (33%), Positives = 629/1219 (51%), Gaps = 123/1219 (10%)

Query: 19   EEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFG--ETIVEPGYDPSKK 76
            E F +    K   SFFNE+GLV  QI S+N+FI   +Q+  DS    E   +P Y P ++
Sbjct: 54   ENFTEEDTWKVIGSFFNEHGLVHQQIESFNDFITYRMQEIIDSHPPIEITPQPNYRPEEE 113

Query: 77   GEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQ 136
             E    Y  ++FGQ++L KPS    +G  +H ++P+ ARL+N+TY+S++ + ++ + Y  
Sbjct: 114  VENSVVY-KLKFGQLSLSKPSVEEKDGVFKH-IWPQEARLRNLTYASQVYIDIEQETY-- 169

Query: 137  KRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDF 190
              +  D   T  +  +   V         + R+P+M KS  CW +G+        G+C F
Sbjct: 170  --INEDGKLTQTDSTVYPRV--------PLCRMPMMHKSSYCWTRGLNDQDLSDIGECVF 219

Query: 191  DHGGYFIIKGAEKVFVAQEQICLKRLWV---SNSMGWTVA-YKSENKRNRLIVRLVDMSK 246
            D GGYF++ G E+V +AQE++    ++V    NS    VA  +S+    + +  L  M  
Sbjct: 220  DQGGYFVVNGGERVLIAQERMANNFVYVFNKKNSKYSAVAQLRSQPDFIQGVTSLTIMIS 279

Query: 247  FEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHD 306
               +   + V  + ++ ++IP+ ILF ALG  SD++I+  I +   D  +L+++ +S+ +
Sbjct: 280  NSQLTKNKMVAVLPYIRSDIPVPILFRALGCISDRDILQRIVYDFSDTQMLSLMRSSLEE 339

Query: 307  ADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMN-------TYLFPSLHGTK---- 355
                C E+      L ++ K  +G T   G   EE +N        +  P + GT+    
Sbjct: 340  ----CSEYTSQEQCLDFIGK--RGPTV--GALQEERLNFAKETLRRHFLPHV-GTEVGSE 390

Query: 356  -QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKA 414
             +K  +LGYM+  LL    GR   D+R+ F  KRL+LAG L+            K + + 
Sbjct: 391  SKKCFYLGYMIHRLLLNQLGRINEDDREHFGKKRLDLAGSLMASSFGTLFRKLAKDVERF 450

Query: 415  LQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERI-------------- 460
            L+  +   R+          S +T GL     TG  S   K    +              
Sbjct: 451  LKNQIDSGRSFDVAGAIKSCSQITQGLQYQLLTGTHSKIIKIKFILLKKFTIWNWGRDKD 510

Query: 461  -----SGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGE 515
                 +G+   L R      L  LRR    +   GK+   R  H +HWG IC   TP+G+
Sbjct: 511  GNVVRTGVSQVLNRLTFASYLSHLRRLNTPLGREGKMAKPRQLHNTHWGMICPAETPEGQ 570

Query: 516  NCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCK 574
              GLVKNL +   +S  S+   I + L   GM+ L + +   +  + K+F++G W+GV  
Sbjct: 571  AVGLVKNLALMCYISVGSLSSTILDFLLEFGMDSLDEISPILIKDRVKIFLNGTWVGVFN 630

Query: 575  DSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKS--- 631
               S V+ L   RR+  + ++  I RD + +E++IF D+GR +RPL +VEN   + +   
Sbjct: 631  QPDSLVNVLLELRRKGNISSETSIVRDIMSNEIKIFTDSGRSMRPLYIVENNRLLITKRH 690

Query: 632  ---LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMS 688
               +E    T+  L++ G++E +  EEEE C  A     L+ +  +     +THCE+  S
Sbjct: 691  ANMIENNQLTWSGLMETGVVEYIDCEEEEICMIAMFPDDLVNN--NNYCNSYTHCEIHPS 748

Query: 689  FLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLF- 747
             +LG+   IIPF + + + R  YQS     QA+G  +TN ++R+DTLSH L+YPQ+PL  
Sbjct: 749  MILGVCASIIPFPDQNQSPRNTYQS-AMGKQAMGVYSTNYNLRMDTLSHVLYYPQKPLVC 807

Query: 748  -RTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFR 806
             R+M               L   EL  G N+IVA+  + GYNQEDSL+MN++S++RG+FR
Sbjct: 808  TRSM-------------EFLRFRELPAGINSIVAIMCYTGYNQEDSLIMNQSSIDRGLFR 854

Query: 807  SEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIV 866
            S   R+Y +E       V    +        +  K G    LD+DG    G+ +   DI+
Sbjct: 855  SVFNRTYSSEEKYLGSTVIESFTKPTSTGKFLNLKRGDYSKLDNDGLIEPGSRVLGDDII 914

Query: 867  IGKYADSGADH---------------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQV 911
            IG+ +   +D                S  L+  E G+V  V+L+ N+ G  F+ V +R +
Sbjct: 915  IGRSSPVESDPNNPQYTPEMNLRMDCSCCLRPNENGVVDNVLLTVNNKGCKFTKVKVRSI 974

Query: 912  RSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAAL 971
            R P +GDKF+S HGQKG +G     E+ PFT  GIVPDI++NPHA PSR T G L+E  L
Sbjct: 975  RVPQIGDKFASRHGQKGTIGMTFRMEDLPFTCDGIVPDIIMNPHAVPSRMTIGHLIECLL 1034

Query: 972  GKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLI 1031
            GK       G   G++  ATPF+  +++ I+ +L +  +S++G E  ++G TG ++ S I
Sbjct: 1035 GK------VGSLVGMEGDATPFSKMTLEQISNRLFKCRYSRYGNEAFHNGFTGNLMASKI 1088

Query: 1032 FIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAA 1091
            F+GPT+YQRL HM EDK+  R  GPV  LTRQP   R R GG++FGEMERDC+I+HGAA 
Sbjct: 1089 FVGPTYYQRLKHMVEDKIHARARGPVTMLTRQPTEGRSREGGLRFGEMERDCMISHGAAK 1148

Query: 1092 NLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVP 1149
             L ERLF  SD+Y++H+C  C   +VAN+               C  CD+   I +  +P
Sbjct: 1149 MLKERLFDQSDAYRVHVCNFCGLLSVANLNNSSFQ---------CTACDNKTQISQVTIP 1199

Query: 1150 YGAKLLCQELFSMGITLKF 1168
            Y  KLL QEL +M I  K 
Sbjct: 1200 YACKLLLQELMAMAIYPKL 1218


>gi|189197211|ref|XP_001934943.1| DNA-directed RNA polymerase II subunit RPB2 [Pyrenophora
            tritici-repentis Pt-1C-BFP]
 gi|187980891|gb|EDU47517.1| DNA-directed RNA polymerase II subunit RPB2 [Pyrenophora
            tritici-repentis Pt-1C-BFP]
          Length = 1208

 Score =  631 bits (1628), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 417/1236 (33%), Positives = 626/1236 (50%), Gaps = 169/1236 (13%)

Query: 4    DDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFG 63
            DD G  +     D  +  L   C     SFF+  GLVS Q++SY+EF +N +Q      G
Sbjct: 8    DDEGMDE---YEDEEDRVLPEDCWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENG 64

Query: 64   ETIVEPG--YDPSKKGEG--EWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNM 119
              I+E    Y+P ++     + RY  M+FG+V L +P+   G+G     ++P  ARL+N+
Sbjct: 65   SVILEQNQPYNPDEEDNPIIKRRY-EMKFGRVYLARPTHTEGDGTTVQ-LYPHEARLRNL 122

Query: 120  TYSSRMKVKVQFQVYTQKR-----VTSDK-----FKTGREQ--YIQKEVLSDE--TTNII 165
            TYS  M   ++ +V   +         D+     +  G+ Q  + ++ + SD+     + 
Sbjct: 123  TYSGAMLADIENRVMVAREGRDPDADDDEEMEGGYTGGQNQIRWERENMSSDDGAAARVF 182

Query: 166  IGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGAEKVFVAQEQICLKRLWV- 218
            IG++PVM++S+LC ++     D      C +D GGYF+I G+EKV +AQE+     + V 
Sbjct: 183  IGKLPVMLRSELCHLRAQSDADLFALNECPYDQGGYFVINGSEKVLIAQERSAANIVQVF 242

Query: 219  ---SNSMGWTVAYKSENKRNRLIVRLVDMSKFED--------IKGGEKVLSVYFLSTEIP 267
                  + W    +S  ++   ++   ++   E+        I G     ++ ++  ++P
Sbjct: 243  RKKQGPIPWIAEIRSAVEKGTRLISSFNIKWAENSLAGPGKRIPGPFAYATLPYIKADVP 302

Query: 268  IWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDE-------FRKGRNA 320
            + I+F ALG+ SD+EI++ I F   D   L +L  SI +     D         ++G N+
Sbjct: 303  MAIVFRALGIVSDEEILSHIVFDRNDTQTLELLKPSIEEGSVVQDRETALDFIAKRGANS 362

Query: 321  ------LKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSG 374
                  LK+   +++   F P  S +E  +T          +KA F GYM+  LLQ   G
Sbjct: 363  GTRDRRLKFARDIMQ-REFLPHISQKEGQDT----------RKAYFFGYMIHRLLQCVLG 411

Query: 375  RRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDA 434
            RR  D+RD F  KRL+LAG L+    ++      K + K LQR +  ++    ++  + A
Sbjct: 412  RRDEDDRDHFGKKRLDLAGPLIANLFRILFLKLTKDVYKYLQRCVENNQDFN-VQMAVKA 470

Query: 435  SILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGD 494
            S +TNGL  + +TG W    K     +G+   L R     TL  LRRT   V   GK+  
Sbjct: 471  STITNGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAK 530

Query: 495  ARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDA 553
             R  H SHWG +C   TP+G+ CGLVKNL +   VS  S   PI + +    M+ L +  
Sbjct: 531  PRQLHNSHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSDATPIVDFMTQRNMQLLEEYD 590

Query: 554  SYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDA 613
                    KVFV+G W+GV  ++   V+ ++  RR   L  ++ + RD    E +IF DA
Sbjct: 591  QNQSPDATKVFVNGVWVGVHSNAQQLVTVVQELRRNGTLSYEMSLIRDIRDREFKIFTDA 650

Query: 614  GRILRPLLVVEN----------------MGKIKS---------------LEGKNYTFQAL 642
            GR++RPL VVEN                  K+KS               +E   Y ++ L
Sbjct: 651  GRVMRPLFVVENDVRKPNRNHLIFTKEISNKLKSEQMEANQRQGWSEEEVEQATYGWRGL 710

Query: 643  LDHGIIELVGTEEEEDCCTAWGIKYL-------------------------LKDIEDKKP 677
            +  G++E +  EEEE     +  + L                         LK + D + 
Sbjct: 711  IQDGVVEYLDAEEEETAMITFSPEDLEEWREMKMGLPMTDHSLEGSQRLRRLKPLPDPRI 770

Query: 678  IKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSH 737
              +THCE+  + +LG+   IIPF +H+ + R  YQS     QA+G   TN ++R++T+ +
Sbjct: 771  HSYTHCEIHPAMILGICASIIPFPDHNQSPRNTYQS-AMGKQAMGVALTNFALRMETMMN 829

Query: 738  QLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNR 797
             L+YPQ+PL  T   +            L   EL  GQNAIVA+  + GYNQEDS++MN+
Sbjct: 830  VLYYPQKPLATTRSME-----------YLKFRELPAGQNAIVAIATYGGYNQEDSVIMNQ 878

Query: 798  ASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK------IQSKIGRVDSLDDD 851
            +S++RG+FRS   R+Y         Q KR   + +  F K      ++ K G  D LDDD
Sbjct: 879  SSIDRGLFRSLFYRAYTE-------QEKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDD 931

Query: 852  GFPFIGANLQSGDIVIGKYADSGADH---------------SIKLKHTERGMVQKVVLSS 896
            G    G  +   DI+IGK A    D                S  L+ TE G+V +V+ ++
Sbjct: 932  GVVAPGVRVSGDDIIIGKTAPIATDAAELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTT 991

Query: 897  NDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHA 956
            N +G  F  V  R  + P +GDKF+S HGQKG +G    QE+ PF+ +G+ PD++INPHA
Sbjct: 992  NTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFSREGLTPDLIINPHA 1051

Query: 957  FPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTE 1016
             PSR T   L+E  L K       G  +G +  ATPF   +VD +++ L  AG+ K G E
Sbjct: 1052 IPSRMTIAHLVECLLSK------VGAITGQEGDATPFTDVTVDQVSQLLENAGYQKRGFE 1105

Query: 1017 RLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKF 1076
             +Y+G TG+ +R+ IF+GPT+YQRL HM +DK+  R  GP+  LTRQPV  R R GG++F
Sbjct: 1106 IMYNGHTGKKMRTQIFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRF 1165

Query: 1077 GEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKC 1112
            GEMERDC+IAHGAAA L ERLFT+SD+Y +H+C  C
Sbjct: 1166 GEMERDCMIAHGAAAFLKERLFTVSDAYTVHVCDIC 1201


>gi|324120594|dbj|BAJ78688.1| RNA polymerase II second largest subunit [Metriocampa sp. 44]
          Length = 1176

 Score =  631 bits (1628), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 420/1212 (34%), Positives = 625/1212 (51%), Gaps = 134/1212 (11%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPSKKGEGEWRYA 84
            C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       + + E   RY 
Sbjct: 27   CWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTTGEVENPPRYL 86

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKF 144
             ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +          T    
Sbjct: 87   -LKFEQIYLSKPTHWEKDGAPT-PMMPNEARLRNLTYSAPLYVDI----------TKSIV 134

Query: 145  KTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFII 198
            K G      +E +  +     IG+IP+M++S  C + G+      E  +C  D GGYFII
Sbjct: 135  KEG------EEAVETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFII 188

Query: 199  KGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR---------NRLIVRLVDMSKFED 249
             G+EKV +AQE++    ++V +      AYKSE +          + L V ++     + 
Sbjct: 189  NGSEKVLIAQEKMATNTVYVFSMKDGKYAYKSEIRSCLEHSSRPTSTLWVNMLARGG-QS 247

Query: 250  IKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIH 305
            IK    G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  ++ ++  S+ 
Sbjct: 248  IKKSAIGQRIIAIVPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLD 307

Query: 306  DA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEECMNTYLFPSL 351
            +A      N    F   R A         +KY  ++++    P    ++ C         
Sbjct: 308  EAFVVQEQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFC--------- 358

Query: 352  HGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRM 411
                +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL    +    +  K +
Sbjct: 359  --ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLLKEV 416

Query: 412  AKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRAN 471
                Q+ +   +    +E  +   I+T+GL  + +TG W    K  +  +G+   L R  
Sbjct: 417  RMYAQKFIDRGKDFN-LELAIKTRIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLT 475

Query: 472  PLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST 531
               TL  LRR    +   GK+   R  H + WG IC   TP+G   GLVKNL +   +S 
Sbjct: 476  FASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISV 535

Query: 532  -SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRK 590
             S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    +S LR+ RR+ 
Sbjct: 536  GSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMSTLRKLRRQM 595

Query: 591  EL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVE---------NMGKIKSLEGKNYTFQ 640
            ++  ++V + RD    E+RI+ DAGRI RPLL+VE         ++  +K  E  NY +Q
Sbjct: 596  DIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVEGGKLSLKKRHIEMLKEREYNNYGWQ 655

Query: 641  ALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPF 700
             L+  G++E + T EEE    A   + L +D E      +THCE+  + +LG+   IIPF
Sbjct: 656  DLVASGVVEYIDTLEEETVMIAMSPEDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPF 715

Query: 701  ANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGY 760
             +H+ + R  YQS     QA+G   TN  +R+DTL+H LFYPQ+PL  T   +       
Sbjct: 716  PDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLFYPQKPLVTTRSME------- 767

Query: 761  GHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNK 820
                 L   EL  G N+IVA+  + GYNQEDS++MN +++ERG FRS   R+YK      
Sbjct: 768  ----YLRFRELPAGINSIVAIACYTGYNQEDSVIMNTSAVERGFFRSVFYRAYKD----- 818

Query: 821  EMQVKRRSSDDMVNFGKIQSKIGR------VDSLDDDGFPFIGANLQSGDIVIGKYAD-- 872
              Q  +RS D    F K   +  +       D LDDDG    G  +   D++IGK     
Sbjct: 819  --QECKRSGDQEEQFEKPTRESCQGMRNAIYDKLDDDGIIAPGIRVSGDDVIIGKTITLP 876

Query: 873  -------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDK 919
                         S  D S  L+++E G+V +V+++ N++G  F  + +R VR P +GDK
Sbjct: 877  ITDDELEGTTKRFSKRDASTFLRNSETGIVDQVMVTLNNEGYKFCKIRVRSVRIPQIGDK 936

Query: 920  FSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALG 979
            F+S HGQKG  G    QE+ PFT +G+ PDI+INPHA PSR T G L+E   GK   +  
Sbjct: 937  FASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGK--VSAN 994

Query: 980  KGICSGLKRYATPFA-TPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFY 1038
            KG        ATPF  T +V  I+  L   G+   G E +Y+G+TG  + + IF+GPT+Y
Sbjct: 995  KGEIGD----ATPFNDTVNVQKISNLLQEYGYQLRGNEVMYNGQTGRKINAQIFLGPTYY 1050

Query: 1039 QRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLF 1098
            QRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC IAHGAA  L ERLF
Sbjct: 1051 QRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLF 1110

Query: 1099 TLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLC 1156
             +SD Y++H+C  C    +AN+               C+ C +   I +  +PY AKLL 
Sbjct: 1111 EVSDPYRVHVCNLCGLIAIANLRNNTFE---------CKGCKNKTQISQVRLPYAAKLLF 1161

Query: 1157 QELFSMGITLKF 1168
            QEL +M I  + 
Sbjct: 1162 QELMAMNIAPRL 1173


>gi|403336158|gb|EJY67267.1| DNA-directed RNA polymerase [Oxytricha trifallax]
          Length = 1239

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 411/1223 (33%), Positives = 628/1223 (51%), Gaps = 132/1223 (10%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIV--EPGYDPSKKGEGEWR--YASMR 87
            S+F ++GLVS QI+S++ F+   LQ+     G+  +   P Y  +K+     +     ++
Sbjct: 57   SYFKQHGLVSQQISSFDRFVNFSLQEIISENGQLQIPYTPQYQLNKQQHETDKDIVYEVQ 116

Query: 88   FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
            F Q +++              +FP  AR++N+TY++ + V +        +      KTG
Sbjct: 117  FKQASVNSYPRLQEEDDTYSPIFPHEARMRNLTYATEVFVDITLSKKELDKEMIIDPKTG 176

Query: 148  REQYIQKEVLSD-ETTNIIIGRIPVMVKSDLCWMKGV-------EKGDCDFDHGGYFIIK 199
            +     K+V+ + +   + IG+IPVM++S  C +  +       E  DC +D GGYFII 
Sbjct: 177  QRHQKVKQVMQEYDEARVTIGKIPVMLRSKFCQLHSLNQMQRMKEGKDCQYDQGGYFIIN 236

Query: 200  GAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSE----NKRNRLIVRLVD------- 243
            G+EKV VAQE++   ++ V      +   W    +S+    NK  + ++  +        
Sbjct: 237  GSEKVIVAQERMANNQVNVFHKKPPSKYSWVAEIRSQAENSNKPPQQLLLFLKSRYKSSG 296

Query: 244  ----MSKFEDIKGGEKV-LSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTC-EDCSIL 297
                 +     K G+ + +S+  +  +IP+ ILF ALG  SD++I++ + F C +D  + 
Sbjct: 297  PGFGQANHSTSKFGQSIYVSLPMIKEQIPLVILFRALGTISDRQILSRVCFDCPDDPEMG 356

Query: 298  NILFASIHDA------DNKCDEFRKGRNALKYV-------DKLIKGTTFPPGESTEECMN 344
              L AS+ ++      ++  D   K  +A  Y+        KL+  + F P  ST     
Sbjct: 357  EALRASLEESKIVDTQEDAMDYIAKRGSAQPYIRENRLTYTKLMLESEFLPHIST----- 411

Query: 345  TYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHI 404
                P      +K+ FLGYMV  LL+A+ GR   D+RD +  KRL++AG LL    +   
Sbjct: 412  ---LP--QDMPKKSFFLGYMVNKLLKAFLGRIDEDDRDYYGKKRLDMAGSLLATNFRQLF 466

Query: 405  AHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIV 464
             +    M + L+ ++   +    ++  +   I+T GL  A +TG W        + +G+ 
Sbjct: 467  RNFTDTMRRILKHEIDSGKEQIVLQNSIKQDIITRGLRTALATGNWGRDKNGDVQKTGVA 526

Query: 465  ANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLG 524
              L R     +L  LRR    +  TGK+   R  H +HWG IC   TP+G  CGLVKNL 
Sbjct: 527  QVLNRLTFASSLSHLRRLNTPIAKTGKLAKPRQLHNTHWGMICPAETPEGAACGLVKNLA 586

Query: 525  VTGLVST----SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFV 580
            +   VS     S L  I E L   G+++L D      G + ++FV+G+W G   +    +
Sbjct: 587  LMTFVSVGSQPSYLISILEDL---GVDRLDDMNQVGSGRQVRIFVNGNWFGTHANPDDLI 643

Query: 581  SELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMG------KIKSLEG 634
              + + RR  ++P ++ I RD    E+R + D+GR+ RPL +V+N         I  LE 
Sbjct: 644  KSMLKLRRTHQIPKEIAIVRDLQNKEIRFYTDSGRVQRPLFIVQNNNIKLKKKHISLLEK 703

Query: 635  KNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLS 694
              Y F   +  G++E +  EEEE    A  ++ L K  ++ +   +THCE+  S +LG+ 
Sbjct: 704  NEYNFDDTIKEGLVEFLDVEEEETAMIAMHLQDL-KSKKENRVTTYTHCEIHPSMILGVC 762

Query: 695  CGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDC 754
              IIPF +H+ + R  YQS     QA+G  T+N SIR+DTL+H L+YPQ+PL  T   D 
Sbjct: 763  ASIIPFPDHNQSPRNTYQS-AMGKQAMGIYTSNHSIRMDTLAHVLYYPQKPLVCTKSMDF 821

Query: 755  LGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYK 814
            L        H     EL  G NAIVA+  + GYNQEDS++ N++S++RG+FRS   R+Y 
Sbjct: 822  L--------HF---KELPAGSNAIVAIACYTGYNQEDSIIFNQSSIDRGIFRSAFFRTY- 869

Query: 815  AEVDNKEMQVKRRSSDDMVNFGKIQS-KIGRVDSLDDDGFPFIGANLQSGDIVIGK---- 869
            +E   K+ +       ++ +F K    K G  D LD DG    G  +   D++IGK    
Sbjct: 870  SETQEKDERF------EIPDFKKCSGRKHGTYDKLDIDGLINPGNQVSGDDVIIGKTTAI 923

Query: 870  --------------------YADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLR 909
                                +  S  D S  LKH+E G + +VVL+ N+ G+ F  + +R
Sbjct: 924  KMNENMNGNANSSQGADPMFFVKSRRDVSTCLKHSETGKIDQVVLTVNEQGERFVKIKMR 983

Query: 910  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEA 969
              R P +GDKF+S HGQKG +G    QE+ PFT +GIVPD++INPHA PSR T G L+E 
Sbjct: 984  SERIPQIGDKFASRHGQKGTVGMTYRQEDMPFTREGIVPDLIINPHAIPSRMTIGHLIEC 1043

Query: 970  ALGKGIAALGKGICSGLKRYATPF----ATPSVDAITEQLHRAGFSKWGTERLYDGRTGE 1025
             LG  +A+L     +G +  ATPF       +V+ I+++LH  G+   G E +Y+G  G+
Sbjct: 1044 -LGSKVASL-----TGTEGDATPFQKVGVKDTVEQISKRLHECGYQLRGNEVMYNGFNGK 1097

Query: 1026 MVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLI 1085
             +  +IF+GPT+YQRL HM  DK+  R  GP   LTRQP   R R GG++FGEMERDC+I
Sbjct: 1098 KMEVMIFLGPTYYQRLKHMVADKIHSRGRGPTQILTRQPTEGRSRDGGLRFGEMERDCMI 1157

Query: 1086 AHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVK 1145
            +HGAA  L ERLF +SD Y++H+C  C  +       VG   + R   C  C +   I +
Sbjct: 1158 SHGAARFLKERLFDVSDFYRIHMCEVCGLIC------VGNLSEQRFE-CYNCQNTSKICQ 1210

Query: 1146 ANVPYGAKLLCQELFSMGITLKF 1168
             N+PY  KLL QEL +M I  + 
Sbjct: 1211 VNIPYACKLLMQELMAMQIAPRL 1233


>gi|392867393|gb|EAS29377.2| DNA-directed RNA polymerase II subunit RPB2 [Coccidioides immitis RS]
          Length = 1258

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 428/1261 (33%), Positives = 634/1261 (50%), Gaps = 149/1261 (11%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RY 83
            C     SFF   GLVS Q++S++EFI   +Q+  +  G+  ++    P +        R 
Sbjct: 25   CWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTIAPDEDDPDPVMVRR 84

Query: 84   ASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKR----- 138
              ++FG V L +PS   G+G     M P+ ARL+N+TY+S + + +  ++   +      
Sbjct: 85   YELKFGTVMLARPSMTEGDGATSI-MLPQEARLRNLTYASPLYLGITKKIAEGRERSLAE 143

Query: 139  ---------VTSDKFKTGREQYIQ---KEVLSDET--TNIIIGRIPVMVKSDLCWMKGVE 184
                        D+ +  R  Y+Q   K +  DE    NI IG++P+M+KS  C +K + 
Sbjct: 144  RDEDDDEPDAKGDEERRARGTYLQWEPKALPEDEADEENIFIGKMPIMLKSKYCILKDLG 203

Query: 185  K------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENK 233
            +       +C +D GGYFII G+EKV +AQE+     + V      +   +    +S  +
Sbjct: 204  EHALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAVE 263

Query: 234  RNRLIVRLVDMSKF---EDIKGG--EKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLI 287
            +   I+  + +  F   +  KGG    + S   ++ T+IPI ++F ALGV SD++I+N I
Sbjct: 264  KGSRILSQLSIKLFAKGDSSKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDEDILNHI 323

Query: 288  DFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES----TEECM 343
             +   D  +L +L   I +     D       AL ++ K     T    E       + +
Sbjct: 324  CYDRNDTPMLEMLKPCIEEGFVIQDR----EVALDFISKRGSSPTSMNHEKRVRYARDII 379

Query: 344  NTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERE 399
                 P +  ++    +KA FLGYMV  LLQ   GRR  D+RD F  KRL+LAG LL   
Sbjct: 380  QKEFLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDVDDRDHFGKKRLDLAGPLLANL 439

Query: 400  LKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTER 459
             +V      K + K +QR +  +R +  +   + AS LT GL  A +TG W    K    
Sbjct: 440  FRVLFMRLTKDLYKYVQRCVETNRQLY-LNIGVKASTLTGGLKYALATGNWGEQKKAASS 498

Query: 460  ISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGL 519
             +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGL
Sbjct: 499  KAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGL 558

Query: 520  VKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLS 578
            VKNL +   ++  +  EPI + +    ME L +          K+FV+G W+GV +D   
Sbjct: 559  VKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTKIFVNGVWVGVHRDPSH 618

Query: 579  FVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK---------- 628
             VS ++  RRR  +  +V +  D    E +IF DAGR+ RPL VV+N  K          
Sbjct: 619  LVSTVQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSENSGSLVLT 678

Query: 629  ---IKSLEG---------------KNYTFQALLDHGIIELVGTEEEE-----------DC 659
               I  LE                + Y +  L+  G++E V  EEEE           + 
Sbjct: 679  KEHIHKLEADKEIPADLDPEERRERYYGWDGLVKSGVVEYVDAEEEETIMIVMSPEDLEV 738

Query: 660  CTAWGIKYLLK-DIED----------KKPIKFTHCELDMSFLLGLSCGIIPFANHDHARR 708
               +   Y+ + D  D          +K   +THCE+  S +LG+   IIPF +H+ + R
Sbjct: 739  SKQYQAGYIPEEDTSDPNRRVRSKLSQKAHTWTHCEIHPSMILGICASIIPFPDHNQSPR 798

Query: 709  VLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPR 768
              YQS     QA+G   TN   R++T+++ L+YPQ+PL  T   +            L  
Sbjct: 799  NTYQS-AMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSME-----------FLKF 846

Query: 769  PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRS 828
             EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y        + V  R 
Sbjct: 847  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERF 906

Query: 829  SDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD---------------S 873
               M +   ++ K G  D +DDDG    G  +   DI+IGK A                +
Sbjct: 907  EKPMRS-DTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPESEELGQRTKQHT 965

Query: 874  GADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
              D S  L+ TE G+V +V++S++++   F  V +R  + P +GDKF+S HGQKG +G  
Sbjct: 966  KLDVSTPLRSTESGIVDQVLVSTSNEDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVT 1025

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRY---A 990
              QE+ PFT +GIVPD++INPHA PSR T   L+E  L K          S L+ Y   A
Sbjct: 1026 FRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSK---------VSSLRGYEGDA 1076

Query: 991  TPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVK 1050
            TPF   +VD+++  L   G+   G E +Y+G TG  + + IF+GPT+YQRL HM +DK+ 
Sbjct: 1077 TPFTDVTVDSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQIFLGPTYYQRLRHMVDDKIH 1136

Query: 1051 FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICR 1110
             R  GP   LTRQPV  R R GG++FGEMERDC+IAHGA+A L ERLF +SD +++HIC 
Sbjct: 1137 ARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICD 1196

Query: 1111 KCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
             C  +   I ++  G  +     CR C + + I + ++PY AKLL QEL SM I  +  T
Sbjct: 1197 IC-GLMTPIAKLKKGDFE-----CRACKNKNKISQVHIPYAAKLLFQELMSMNIAARMYT 1250

Query: 1171 E 1171
            +
Sbjct: 1251 K 1251


>gi|444313813|ref|XP_004177564.1| hypothetical protein TBLA_0A02460 [Tetrapisispora blattae CBS 6284]
 gi|387510603|emb|CCH58045.1| hypothetical protein TBLA_0A02460 [Tetrapisispora blattae CBS 6284]
          Length = 1236

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 426/1238 (34%), Positives = 635/1238 (51%), Gaps = 144/1238 (11%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +FF E GLVS Q++S+N+F+   LQ         I+E     + + +   R   + FG++
Sbjct: 40   AFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHTTESDNISRKYEISFGKI 99

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE-- 149
             + KP     +G   H ++P+ ARL+N+TYSS + V V+      KR        GRE  
Sbjct: 100  YVTKPMVNESDGV-THALYPQEARLRNLTYSSGLFVDVK------KRTHEAIDMPGRELK 152

Query: 150  -QYIQKEVLSD-ETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGA 201
               I +E   D +   + IGR+P+M++S  C++    + D      C FD GGYFII G+
Sbjct: 153  YSLIAEESEEDFDAGKVFIGRLPIMLRSKNCYLSDATESDLYKLKECPFDMGGYFIINGS 212

Query: 202  EKVFVAQEQICLKRLWV-SNSMGWTVAYKSE-----NKRNRLIVRL-VDMSKFEDIKGGE 254
            EKV +AQE+     + V   +    +++ +E      K +R I  L V +   E      
Sbjct: 213  EKVLIAQERSAGNIVQVFKKAAPSPISHIAEIRSALEKGSRFISTLQVKLYGREGSSSRT 272

Query: 255  KVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEF 314
               ++ ++  +IPI I+F ALG+  D EI+  I +   D  +L +L   + D     D  
Sbjct: 273  IKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFVIQDR- 331

Query: 315  RKGRNALKYVDKLIKGTTFPPGES-----TEECMNTYLFP---SLHG-TKQKARFLGYMV 365
                 AL ++ +  +GT     +        + +     P    L G   +KA FLGYM+
Sbjct: 332  ---ETALDFIGR--RGTALGIKKEKRIQYARDILQKEFLPHITQLEGFESRKAFFLGYMI 386

Query: 366  KCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDL--YGDR 423
              LL     R+  D+RD F  KRL+LAG LL        A   K + + L RD+  Y  R
Sbjct: 387  NRLLLCALDRKDQDDRDHFGKKRLDLAGPLL--------AQLFKTLFRKLTRDIFRYMQR 438

Query: 424  TVRP-----IEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVD 478
            TV       ++  ++A  +T+GL  A +TG W    K     +G+   L R     TL  
Sbjct: 439  TVEEAKDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSH 498

Query: 479  LRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-LEPI 537
            LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S      PI
Sbjct: 499  LRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPI 558

Query: 538  FEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVE 597
               L   GME L D   +      +VFV+G W GV ++    +  LR  RR+ ++  +V 
Sbjct: 559  ITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVS 618

Query: 598  IKRDELQSEVRIFMDAGRILRPLLVVENMGKI--------------------KSLEG--- 634
            + RD  + E++IF DAGR+ RPL +V++  ++                    + +EG   
Sbjct: 619  MIRDIREKELKIFTDAGRVYRPLFIVDDDSELGHKELKVRKGHIAKLLATEYQDIEGGYE 678

Query: 635  --KNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYL-----------------LKDIEDK 675
              ++YT+ +LL+ G++E +  EEEE    +   + L                    ++  
Sbjct: 679  DEEDYTWTSLLNEGLVEYIDAEEEETILISMAPEDLEPISPEEIDEANNSEESAGHVDVA 738

Query: 676  KPIK-------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNP 728
            K IK       FTHCE+  S +LG++  IIPF +H+ + R  YQS     QA+G   TN 
Sbjct: 739  KRIKALHHAATFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQS-AMGKQAMGVFLTNY 797

Query: 729  SIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYN 788
            ++R+DT+++ L+YPQ+PL  T   +            L   EL  GQNAIVA+  + GYN
Sbjct: 798  NVRMDTMANILYYPQKPLGTTRSME-----------YLKFRELPAGQNAIVAIACYSGYN 846

Query: 789  QEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSL 848
            QEDS++MN++S++RG+FRS   RSY  +     M +   + +       ++ K G  D L
Sbjct: 847  QEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSIT-ETFEKPQRTNTLKMKHGSYDKL 905

Query: 849  DDDGFPFIGANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVV 893
            DDDG    G  +   DI+IGK                  S  D S  L+ TE G++ +V+
Sbjct: 906  DDDGLISPGVRVSGEDIIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIIDQVL 965

Query: 894  LSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVIN 953
            +++N DG  F  V +R  + P +GDKF+S HGQKG +G    +E+ PFT +GIVPD++IN
Sbjct: 966  ITTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYGREDMPFTAEGIVPDLIIN 1025

Query: 954  PHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKW 1013
            PHA PSR T   L+E  L K +AAL     SG +  A+PF   +V+ I++ L   G+   
Sbjct: 1026 PHAIPSRMTVAHLIECLLSK-VAAL-----SGNEGDASPFTDITVEGISKLLREHGYHSR 1079

Query: 1014 GTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGG 1073
            G E +Y+G TG+ + + IF GPT+YQRL HM +DK+  R  GP+  LTRQPV  R R GG
Sbjct: 1080 GFEIMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGG 1139

Query: 1074 IKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPY 1133
            ++FGEMERDC+IAHGAAA L ERL   SD++++HIC  C  +  VI ++     +     
Sbjct: 1140 LRFGEMERDCMIAHGAAAFLKERLMEASDAFRVHICGIC-GLMTVIAKLNHNQFE----- 1193

Query: 1134 CRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
            C+ CD+  DI +  +PY AKLL QEL +M IT +  T+
Sbjct: 1194 CKGCDNKIDIYQIKIPYAAKLLFQELMAMNITPRLYTD 1231


>gi|156835986|ref|XP_001642238.1| hypothetical protein Kpol_186p2 [Vanderwaltozyma polyspora DSM 70294]
 gi|156112711|gb|EDO14380.1| hypothetical protein Kpol_186p2 [Vanderwaltozyma polyspora DSM 70294]
          Length = 1223

 Score =  630 bits (1626), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 426/1252 (34%), Positives = 638/1252 (50%), Gaps = 130/1252 (10%)

Query: 2    DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDS 61
            D D  GF + T+     + +          SFF E GLVS Q++S+N+F+   LQ     
Sbjct: 9    DEDPYGFEEETAPITAEDSW------AVISSFFREKGLVSQQLDSFNQFVDYTLQDIISE 62

Query: 62   FGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTY 121
                I+E     + + +   R   + FG++ + KP     +G   H ++P+ +RL+N+TY
Sbjct: 63   DSTLILEQLAQHTTESDNISRKYEISFGKIYVTKPMVNESDGV-THALYPQESRLRNLTY 121

Query: 122  SSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQ----KEVLSDETTNIIIGRIPVMVKSDL 177
            SS + V V  + Y    V       GR+   Q    +    +E   + IGR+P+M++S  
Sbjct: 122  SSGLFVDVNKRTYEAVDVP------GRDLNYQLIAEESEEDNENDKVFIGRLPIMLRSKN 175

Query: 178  CWMKGVEKGD------CDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWT-VAYKS 230
            C++    + D      C FD GGYFII G+EKV +AQE+     + V      + +++ +
Sbjct: 176  CYLSDATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVA 235

Query: 231  E-----NKRNRLIVRL-VDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIV 284
            E      K +R I  L V +   E         ++ ++  +IPI I+F ALG+  D EI+
Sbjct: 236  EIRSALEKGSRFISTLQVKLYGREGSSTRTIKATLPYIKQDIPIVIIFRALGIIPDGEIL 295

Query: 285  NLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES-----T 339
              I +   D  +L +L   + D     D       AL ++ +  +GT     +       
Sbjct: 296  EHICYDVNDWQMLEMLKPCVEDGFVIQDR----ETALDFIGR--RGTALGIKKEKRIQYA 349

Query: 340  EECMNTYLFP---SLHG-TKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGEL 395
             + +     P    L G   +KA FLGYM+  LL     R+  D+RD F  KRL+LAG L
Sbjct: 350  RDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPL 409

Query: 396  LERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFK 455
            L +  K       K + + +QR +        ++  ++A  +T+GL  A +TG W    K
Sbjct: 410  LGQLFKTLFRKLTKDIFRYMQRTVEEANDFN-MKLAINAKTITSGLKYALATGNWGEQKK 468

Query: 456  RTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGE 515
                 +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+
Sbjct: 469  AMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQ 528

Query: 516  NCGLVKNLGVTGLVSTSI-LEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCK 574
             CGLVKNL +   +S      PI   L   GME L D   +      +VFV+G W GV +
Sbjct: 529  ACGLVKNLSLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHR 588

Query: 575  DSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN--------- 625
            +    +  LR  RR+ ++  +V + RD  + E++IF DAGR+ RPL +VEN         
Sbjct: 589  NPARLMETLRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVENDEQLGHKEL 648

Query: 626  ---MGKIKSL-------------EGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYL- 668
                G I  L             + + YT+ +LL+ G++E +  EEEE    A   + L 
Sbjct: 649  KVRKGHIARLMATEYQDIEGGFEDSEEYTWSSLLNEGLVEYIDAEEEETILIAMQPEDLD 708

Query: 669  ----------LKDIEDKKPIK-------FTHCELDMSFLLGLSCGIIPFANHDHARRVLY 711
                       ++++  K I+       FTHCE+  S +LG++  IIPF +H+ + R  Y
Sbjct: 709  PVQEEEEMEVDENVDTAKRIRSVHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTY 768

Query: 712  QSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPEL 771
            QS     QA+G   TN ++R+DT+++ L+YPQ+PL  T   +            L   EL
Sbjct: 769  QS-AMGKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAME-----------YLKFREL 816

Query: 772  YNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDD 831
              GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   RSY  +     M +   + + 
Sbjct: 817  PAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSIT-ETFEK 875

Query: 832  MVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---------------DSGAD 876
                  ++ K G  D LDDDG    G  +   DI+IGK                  S  D
Sbjct: 876  PQRTNTLRMKHGSYDKLDDDGLIAPGVRVSGEDIIIGKTTPISPDEEELGQRTAYHSKRD 935

Query: 877  HSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ 936
             S  L+ TE G+V +V++++N DG  F  V +R  + P +GDKF+S HGQKG +G    +
Sbjct: 936  ASTPLRSTENGIVDQVLITTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKGTIGITYGR 995

Query: 937  ENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP 996
            E+ PFT +GIVPD++INPHA PSR T   L+E  L K +AAL     SG +  A+PF   
Sbjct: 996  EDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSK-VAAL-----SGNEGDASPFTDI 1049

Query: 997  SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGP 1056
            +V+ I++ L   G+   G E +Y+G TG+ + + IF GPT+YQRL HM +DK+  R  GP
Sbjct: 1050 TVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGP 1109

Query: 1057 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVA 1116
            +  LTRQPV  R R GG++FGEMERDC+IAHGAA+ L ERL   SD++++HIC  C  + 
Sbjct: 1110 MQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGIC-GLM 1168

Query: 1117 NVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
             VI ++     +     C+ CD+  DI + ++PY AKLL QEL +M IT + 
Sbjct: 1169 TVIAKLNHNQFE-----CKGCDNKIDIYQIHIPYAAKLLFQELMAMNITPRL 1215


>gi|254567802|ref|XP_002491011.1| RNA polymerase II second largest subunit B150, part of central core
            [Komagataella pastoris GS115]
 gi|238030808|emb|CAY68731.1| RNA polymerase II second largest subunit B150, part of central core
            [Komagataella pastoris GS115]
 gi|328352458|emb|CCA38857.1| DNA-directed RNA polymerase III subunit C2 [Komagataella pastoris CBS
            7435]
          Length = 1227

 Score =  630 bits (1626), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 425/1248 (34%), Positives = 638/1248 (51%), Gaps = 147/1248 (11%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIV-EPGYDPSKKGEGEWRYA 84
            C     +FF E GLVS Q++S++EF++  +Q         I+ +P    ++K     RY 
Sbjct: 17   CWTVISAFFEEKGLVSQQLDSFDEFMETSIQDLVWEEPRLILDQPAQHTNEKDNINKRY- 75

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKF 144
             +RFG++ L +P+    +G   H MFP+ ARL+N+TYSS + + ++  ++T      +  
Sbjct: 76   EIRFGKIYLSRPTMTEADG-TTHAMFPQEARLRNLTYSSPVYLDMEKSMFTSIDDEGNPN 134

Query: 145  KTGREQYIQKEVLS--DETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYF 196
             T   Q + + +    +E   + IG++P+M++S  C ++ +++ D      C +D GGYF
Sbjct: 135  ATLDWQQVHEPIKDGVEEGNKVHIGKVPIMLRSKFCSLRTLDEVDLYKMKECPYDMGGYF 194

Query: 197  IIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE-----NKRNRLIVRL-VDMSKFED 249
            +I G+EKV +AQE+     + V   +    +++ +E      K +RLI  + + +   ED
Sbjct: 195  VINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALEKGSRLISTMQIKLYGRED 254

Query: 250  IKGGEKV-LSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASI---- 304
               G  +  ++ ++  +IPI I+F ALGV  D EI+  I +   D  +L +L   I    
Sbjct: 255  KGTGRTIKATLPYVKQDIPIVIVFRALGVVPDGEILQHICYDENDWQMLEMLKPCIEEGF 314

Query: 305  --HDADNKCDEF-RKGRNAL--------KYVDKLIKGTTFPPGESTEECMNTYLFPSLHG 353
               D +   D   R+G  AL        +Y   +++    P   + EE   T        
Sbjct: 315  VIQDKEVALDFIGRRGSAALGIRREKRIQYAKDILQKELLP-HITQEEGFET-------- 365

Query: 354  TKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAK 413
              +K  FLGYMV  LL     R+  D+RD F  KRL+LAG LL    ++      + + +
Sbjct: 366  --RKTFFLGYMVNRLLLCALERKDQDDRDHFGKKRLDLAGPLLANLFRILFRKLTREIYR 423

Query: 414  ALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPL 473
             +QR +  DR    +   + ++ +T+GL  + +TG W    K     +G+   L R    
Sbjct: 424  YMQRCIETDRDFN-LNLAVKSTTITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYS 482

Query: 474  QTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLVSTS 532
             TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL + +G+   S
Sbjct: 483  STLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLLSGISIGS 542

Query: 533  ILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL 592
              EPI   L   GME L D          ++FV+G W G+ +D    VS +R  RR   +
Sbjct: 543  PSEPIINFLEEWGMEPLEDYDPAQHTKSTRIFVNGVWTGIHRDPSMLVSTMRDLRRSGAI 602

Query: 593  PTQVEIKRDELQSEVRIFMDAGRILRPLLVVE------NMGKIK---------------- 630
              +V I RD  + E +IF D GR+ RPL +VE      N G+++                
Sbjct: 603  SPEVSIIRDIREREFKIFTDVGRVYRPLFIVEDDESKDNKGELRITKEHIRKIQQGYDDD 662

Query: 631  -------SLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYL-LKDIEDK------- 675
                     E   Y + +L+  G+IE V  EEEE    A   + L  + +E K       
Sbjct: 663  AMNDDSEEQEQDVYGWSSLVTSGVIEYVDGEEEETIMIAMTPEDLQTRSLEQKEIDLNDT 722

Query: 676  -KPIK----------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFP 724
             K IK          FTHCE+  S +LG++  IIPF +H+ + R  YQS     QA+G  
Sbjct: 723  AKRIKPEMSTSSHHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQS-AMGKQAMGVF 781

Query: 725  TTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVH 784
             TN ++R+DT+++ L+YPQ+PL +T   +            L   EL  GQNAIVA+  +
Sbjct: 782  LTNYNVRMDTMANILYYPQKPLAKTQAME-----------YLKFRELPAGQNAIVAIACY 830

Query: 785  LGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK------I 838
             GYNQEDS++MN++S++RG+FRS   RSY         Q KR     +  F K      +
Sbjct: 831  SGYNQEDSMIMNQSSIDRGLFRSLFFRSYMD-------QEKRFGISIVEEFEKPTRATTL 883

Query: 839  QSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---------------DSGADHSIKLKH 883
            + K G  + LD+DG    G  +   DI+IGK                  +  D S  L+ 
Sbjct: 884  RLKHGTYEKLDEDGLIAPGVRVSGDDIIIGKTTPIPPDTEELGQRTKYHTKRDASTPLRS 943

Query: 884  TERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTI 943
            TE G+V +V+L++N +G  F  V +R  + P +GDKF+S HGQKG +G     E+ PF+ 
Sbjct: 944  TENGIVDQVLLTTNQEGLKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFSA 1003

Query: 944  QGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITE 1003
            +GIVPD++INPHA PSR T   L+E  L K       G   G +  ATPF   +VDA++ 
Sbjct: 1004 EGIVPDLIINPHAIPSRMTVAHLIECLLSK------VGSIRGYEGDATPFTDLTVDAVSN 1057

Query: 1004 QLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQ 1063
             L   G+   G E +Y+G TG+ + + +F GPT+YQRL HM +DK+  R  GPV  LTRQ
Sbjct: 1058 LLRDNGYQSRGFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQ 1117

Query: 1064 PVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVV 1123
            PV  R R GG++FGEMERDC+IAHGAA  L ERL   SD++++H+C  C  + +VI  + 
Sbjct: 1118 PVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGIC-GLMSVIANL- 1175

Query: 1124 GGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                K     CR C +  +I + ++PY AKLL QEL +M I  +  TE
Sbjct: 1176 ----KKNQFECRSCKNKTNIYQLHIPYAAKLLFQELMAMNIAPRLYTE 1219


>gi|324120632|dbj|BAJ78707.1| RNA polymerase II second largest subunit [Euborellia plebeja]
          Length = 1174

 Score =  630 bits (1625), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 423/1226 (34%), Positives = 633/1226 (51%), Gaps = 144/1226 (11%)

Query: 17   LGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPSK 75
            +  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       + 
Sbjct: 16   ISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTAG 75

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT 135
            + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +      
Sbjct: 76   EIENPPRYL-LKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLTYSAPLYVDIT----- 128

Query: 136  QKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCD 189
             K +  DK          +E +  +     IG+IP+M++S  C + G+      E  +C 
Sbjct: 129  -KTIIKDK----------EEPIETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECP 177

Query: 190  FDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVRLV 242
             D GGYFII G+EKV +AQE++    ++V +      AYK+E       + R    + + 
Sbjct: 178  LDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKFAYKAEIRSCLEHSSRPTSTLWVN 237

Query: 243  DMSKF-EDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSIL 297
             M++  + IK    G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  ++
Sbjct: 238  MMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMM 297

Query: 298  NILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEECM 343
             ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C 
Sbjct: 298  EMVKPSLDEAFVIQEQNVALNFIGARGARPGVTREKRIKYAREILQKEMLPHVGVSDFC- 356

Query: 344  NTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVH 403
                        +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL       
Sbjct: 357  ----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLL------- 399

Query: 404  IAHARKRMAKALQRD--LYGDRTV-RPIEYYLDASI----LTNGLSRAFSTGAWSHPFKR 456
             A   + + K L ++  +Y  + + R  ++ LD +I    +T+GL  + +TG W    K 
Sbjct: 400  -AFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLDLAIKTKIITDGLRYSLATGNWGDQKKA 458

Query: 457  TERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGEN 516
             +  +G+   L R     TL  LRR    +   GK+   R  H + WG IC   TP+G  
Sbjct: 459  HQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 518

Query: 517  CGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKD 575
             GLVKNL +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D
Sbjct: 519  VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 578

Query: 576  SLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN--------- 625
                ++ LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VEN         
Sbjct: 579  PEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKRH 638

Query: 626  MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCEL 685
            +  +K  E  NY +Q L+  G++E + T EEE    A     L +D E      +THCE+
Sbjct: 639  IDMLKEREYNNYGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQDKEYAYCTTYTHCEI 698

Query: 686  DMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRP 745
              + +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +P
Sbjct: 699  HPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 757

Query: 746  LFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMF 805
            L  T   +            L   EL  G N+IVA+  + GYNQEDS++MN +++ERG F
Sbjct: 758  LVTTRSME-----------YLRFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGFF 806

Query: 806  RSEHIRSYK----AEVDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGA 858
            RS   RSYK      + ++E Q +   R++   M N           D LDDDG    G 
Sbjct: 807  RSVFFRSYKDSESKRIGDQEEQFEKPTRQTCQGMRN--------ALYDKLDDDGIISPGL 858

Query: 859  NLQSGDIVIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNF 903
             +   D+VIGK                  +  D S  L+++E G+V +V+L+ N +G  F
Sbjct: 859  RVSGDDVVIGKTITLPENEDELDGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKF 918

Query: 904  SVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTP 963
              + +R VR P +GDKF+S HGQKG  G    QE+ PFT +G+ PDI+INPHA PSR T 
Sbjct: 919  CKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTI 978

Query: 964  GQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGR 1022
            G L+E   GK   +  KG        ATPF    +V  I+  L   G+   G E +Y+G 
Sbjct: 979  GHLIECLQGK--VSSNKGEIGD----ATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGH 1032

Query: 1023 TGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1082
            TG  + + IF+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERD
Sbjct: 1033 TGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1092

Query: 1083 CLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDD 1142
            C IAHGAA  L ERLF +SD Y++H+C  C  +A      +   R      C+ C +   
Sbjct: 1093 CQIAHGAAQFLRERLFEVSDPYRIHVCNLCGLIA------IANMRN-NTFECKGCKNKTQ 1145

Query: 1143 IVKANVPYGAKLLCQELFSMGITLKF 1168
            I +  +PY AKLL QEL SM I  + 
Sbjct: 1146 ISQVRLPYAAKLLFQELMSMNIAPRL 1171


>gi|146418277|ref|XP_001485104.1| hypothetical protein PGUG_02833 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1291

 Score =  630 bits (1624), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 416/1246 (33%), Positives = 645/1246 (51%), Gaps = 140/1246 (11%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYAS 85
            C     SFF E GLVS Q++S++EFI++ +Q+        I++     + + + E R   
Sbjct: 78   CWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSRLILDQPAQHTSEEDHENRRYE 137

Query: 86   MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
            + FG++ + KP+   G+G   H MFP+ ARL+N+TYSS + V +  +V      + D   
Sbjct: 138  ITFGKIYISKPTQTEGDGTT-HPMFPQEARLRNLTYSSPLYVDMTKRVLK----SDDNAG 192

Query: 146  TGREQYIQKEVLSDET--TNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFI 197
               E    +E + DE   T + +G++P+M++S  C ++ +      E  +C +D GGYF+
Sbjct: 193  NEHELEWIEEEIKDEEPLTKVYLGKVPIMLRSKFCMLRDLGEHEFYELKECPYDMGGYFV 252

Query: 198  IKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKR-NRLIVRL-VDMSKFEDI 250
            I G+EKV +AQE+     + V      + +      +S  +R +RLI  + + +   E+ 
Sbjct: 253  INGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALERGSRLISSMQIKLYGREEK 312

Query: 251  KGGEKVL--SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFAS----- 303
                + +  ++ ++  +IPI I+F ALG+  D +I+  I +   D  +L +L        
Sbjct: 313  STSNRTIKATLPYIKEDIPIVIVFRALGIVPDGDILEHICYDANDWQMLEMLKPCVEEGF 372

Query: 304  -IHDADNKCDEF-RKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTK----QK 357
             I + +   D   R+G   +K   ++         +  ++ +   L P++   +    +K
Sbjct: 373  VIQEREVALDFIGRRGALGIKREKRI---------QYAKDILQKELLPNITQDEGFETRK 423

Query: 358  ARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQR 417
            A FLGYMV  LL     R++ D+RD F  KRL+LAG LL    ++      K +   +QR
Sbjct: 424  AFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRILFKKLTKDIYNYMQR 483

Query: 418  DLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLV 477
             +  D+    +   + +  +T+GL  + +TG W    K     +G+   L R     TL 
Sbjct: 484  CVENDKVFN-LTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLS 542

Query: 478  DLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEP 536
             LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  +  EP
Sbjct: 543  HLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSEP 602

Query: 537  IFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQV 596
            I   L   GME L D    +     +VFV+G W+G  ++    V  +R  RRR ++  +V
Sbjct: 603  ILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHLVDTMRSLRRRGDISPEV 662

Query: 597  EIKRDELQSEVRIFMDAGRILRPLLVV------ENMGKIK-------------------- 630
             I RD  + E +IF DAGR+ RPL +V      E  G++K                    
Sbjct: 663  SIIRDIREKEFKIFTDAGRVYRPLFIVDDDPESETKGELKLQKEHIHKLLNAEYSEEYAT 722

Query: 631  ---SLEGKNYTFQALLDHGIIELVGTEEEE---------------DCCTAWGIKYLLKDI 672
                 E   Y + +L++ G++E V  EEEE                  TA   K L  + 
Sbjct: 723  NEFGEEEGPYGWSSLVNDGVVEYVDAEEEETIMIAMTPEDLEASKSSLTATQQKSLQLEE 782

Query: 673  EDKKPIK------------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQA 720
            ++  P K            FTHCE+  S +LG++  IIPF +H+ + R  YQS     QA
Sbjct: 783  QELDPAKRIKPTNSSTTSTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQS-AMGKQA 841

Query: 721  IGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVA 780
            +G   TN S+R+DT+++ L+YPQ+PL  T              H+  R EL  GQNAIVA
Sbjct: 842  MGVFLTNYSVRMDTMANILYYPQKPLATTR----------AMEHLKFR-ELPAGQNAIVA 890

Query: 781  VNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQS 840
            +  + GYNQEDS++MN++S++RG+FRS   R+Y  +++ ++      + +  +    ++ 
Sbjct: 891  IACYSGYNQEDSMIMNQSSIDRGLFRSLFFRTY-MDLEKRQGMKALETFEKPLRSDTLRL 949

Query: 841  KIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD---------------SGADHSIKLKHTE 885
            K G  + LDDDG    G  +   DI+IGK                  +  D S  L+ TE
Sbjct: 950  KHGTYEKLDDDGLIAPGIRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTE 1009

Query: 886  RGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQG 945
             G+V +V+L++N DG  F  V +R  + P +GDKF+S HGQKG +G     E+ PFT QG
Sbjct: 1010 SGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTVGVTYRHEDMPFTSQG 1069

Query: 946  IVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQL 1005
            IVPD++INPHA PSR T   L+E  L K +++L     SGL+  A+PF   + +A+++ L
Sbjct: 1070 IVPDLIINPHAIPSRMTVAHLIECLLSK-VSSL-----SGLEGDASPFTDVTAEAVSKLL 1123

Query: 1006 HRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPV 1065
               G+   G E +Y G TG+ + + +F GPT+YQRL HM +DK+  R  GPV  LTRQPV
Sbjct: 1124 REHGYQSRGFEVMYHGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPV 1183

Query: 1066 ADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGG 1125
              R R GG++FGEMERDC+IAHGAA  L ERL   SD++++H+C  C      +  V+  
Sbjct: 1184 EGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGVCG-----LMSVIAN 1238

Query: 1126 GRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
             +K +   CR C +  +I + ++PY AKLL QEL +M I+ +  TE
Sbjct: 1239 LKKNQFE-CRSCKNKTNIYQIHIPYAAKLLFQELMAMNISPRLYTE 1283


>gi|223590257|sp|A5DHT2.3|RPB2_PICGU RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2
          Length = 1236

 Score =  630 bits (1624), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 419/1263 (33%), Positives = 649/1263 (51%), Gaps = 140/1263 (11%)

Query: 9    TDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVE 68
            +DP    D         C     SFF E GLVS Q++S++EFI++ +Q+        I++
Sbjct: 6    SDPYMYDDDSSSITPEDCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSRLILD 65

Query: 69   PGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVK 128
                 + + + E R   + FG++ + KP+   G+G   H MFP+ ARL+N+TYSS + V 
Sbjct: 66   QPAQHTSEEDHENRRYEITFGKIYISKPTQTEGDGTT-HPMFPQEARLRNLTYSSPLYVD 124

Query: 129  VQFQVYTQKRVTSDKFKTGREQYIQKEVLSDE--TTNIIIGRIPVMVKSDLCWMKGV--- 183
            +  +V      + D      E    +E + DE  +T + +G++P+M++S  C ++ +   
Sbjct: 125  MTKRVLK----SDDNAGNEHELEWIEEEIKDEEPSTKVYLGKVPIMLRSKFCMLRDLGEH 180

Query: 184  ---EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKR- 234
               E  +C +D GGYF+I G+EKV +AQE+     + V      + +      +S  +R 
Sbjct: 181  EFYELKECPYDMGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALERG 240

Query: 235  NRLIVRL-VDMSKFEDIKGGEKVL--SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTC 291
            +RLI  + + +   E+     + +  ++ ++  +IPI I+F ALG+  D +I+  I +  
Sbjct: 241  SRLISSMQIKLYGREEKSTSNRTIKATLPYIKEDIPIVIVFRALGIVPDGDILEHICYDA 300

Query: 292  EDCSILNILFAS------IHDADNKCDEF-RKGRNALKYVDKLIKGTTFPPGESTEECMN 344
             D  +L +L         I + +   D   R+G   +K   ++         +  ++ + 
Sbjct: 301  NDWQMLEMLKPCVEEGFVIQEREVALDFIGRRGALGIKREKRI---------QYAKDILQ 351

Query: 345  TYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLEREL 400
              L P++   +    +KA FLGYMV  LL     R++ D+RD F  KRL+LAG LL    
Sbjct: 352  KELLPNITQDEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLF 411

Query: 401  KVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERI 460
            ++      K +   +QR +  D+    +   + +  +T+GL  + +TG W    K     
Sbjct: 412  RILFKKLTKDIYNYMQRCVENDKVFN-LTLAVKSQTITDGLRYSLATGNWGEQKKAMSSR 470

Query: 461  SGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLV 520
            +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLV
Sbjct: 471  AGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLV 530

Query: 521  KNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSF 579
            KNL +   +S  +  EPI   L   GME L D    +     +VFV+G W+G  ++    
Sbjct: 531  KNLSLMSCISVGTPSEPILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHL 590

Query: 580  VSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVV------ENMGKIK--- 630
            V  +R  RRR ++  +V I RD  + E +IF DAGR+ RPL +V      E  G++K   
Sbjct: 591  VDTMRSLRRRGDISPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDPESETKGELKLQK 650

Query: 631  --------------------SLEGKNYTFQALLDHGIIELVGTEEEE------------- 657
                                  E   Y + +L++ G++E V  EEEE             
Sbjct: 651  EHIHKLLNAEYSEEYATNEFGEEEGPYGWSSLVNDGVVEYVDAEEEETIMIAMTPEDLEA 710

Query: 658  --DCCTAWGIKYLLKDIEDKKPIK------------FTHCELDMSFLLGLSCGIIPFANH 703
                 TA   K L  + ++  P K            FTHCE+  S +LG++  IIPF +H
Sbjct: 711  SKSSLTATQQKSLQLEEQELDPAKRIKPTNSSTTSTFTHCEIHPSMILGVAASIIPFPDH 770

Query: 704  DHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHN 763
            + + R  YQS     QA+G   TN S+R+DT+++ L+YPQ+PL  T              
Sbjct: 771  NQSPRNTYQS-AMGKQAMGVFLTNYSVRMDTMANILYYPQKPLATTR----------AME 819

Query: 764  HILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQ 823
            H+  R EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y  +++ ++  
Sbjct: 820  HLKFR-ELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRTY-MDLEKRQGM 877

Query: 824  VKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA------------ 871
                + +       ++ K G  + LDDDG    G  +   DI+IGK              
Sbjct: 878  KALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGIRVSGEDIIIGKTTPIPPDTEELGQR 937

Query: 872  ---DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKG 928
                +  D S  L+ TE G+V +V+L++N DG  F  V +R  + P +GDKF+S HGQKG
Sbjct: 938  TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKG 997

Query: 929  VLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKR 988
             +G     E+ PFT QGIVPD++INPHA PSR T   L+E  L K +++L     SGL+ 
Sbjct: 998  TVGVTYRHEDMPFTSQGIVPDLIINPHAIPSRMTVAHLIECLLSK-VSSL-----SGLEG 1051

Query: 989  YATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDK 1048
             A+PF   + +A+++ L   G+   G E +Y G TG+ + + +F GPT+YQRL HM +DK
Sbjct: 1052 DASPFTDVTAEAVSKLLREHGYQSRGFEVMYHGHTGKKLMAQVFFGPTYYQRLRHMVDDK 1111

Query: 1049 VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHI 1108
            +  R  GPV  LTRQPV  R R GG++FGEMERDC+IAHGAA  L ERL   SD++++H+
Sbjct: 1112 IHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHV 1171

Query: 1109 CRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
            C  C      +  V+   +K +   CR C +  +I + ++PY AKLL QEL +M I+ + 
Sbjct: 1172 CGVCG-----LMSVIANLKKNQFE-CRSCKNKTNIYQIHIPYAAKLLFQELMAMNISPRL 1225

Query: 1169 DTE 1171
             TE
Sbjct: 1226 YTE 1228


>gi|389626335|ref|XP_003710821.1| DNA-directed RNA polymerase II subunit RPB2 [Magnaporthe oryzae
            70-15]
 gi|351650350|gb|EHA58209.1| DNA-directed RNA polymerase II subunit RPB2 [Magnaporthe oryzae
            70-15]
 gi|440465319|gb|ELQ34645.1| DNA-directed RNA polymerase II subunit RPB2 [Magnaporthe oryzae Y34]
 gi|440478473|gb|ELQ59304.1| DNA-directed RNA polymerase II subunit RPB2 [Magnaporthe oryzae P131]
          Length = 1276

 Score =  629 bits (1623), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 437/1292 (33%), Positives = 647/1292 (50%), Gaps = 185/1292 (14%)

Query: 19   EEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGE 78
            +E     C     S+F+E GLVS QI+SYNEF  + +Q   D +    ++   +P    E
Sbjct: 24   DEITAEDCWNVISSYFDEKGLVSQQIDSYNEFTTSTIQGIVDEYSVLTLD-NPNPPDTFE 82

Query: 79   GE---WRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKV--QFQV 133
            G+    R   +  G + + +P+    +G     + P   R +N+TYS  + VK+  +  V
Sbjct: 83   GKPIRLRRYEIMLGNILVTQPTVKETDG-KVSTLVPYECRDRNLTYSCPLYVKLTKKVNV 141

Query: 134  YTQKRVTSDKFKTGREQYIQK----------EVLSDETTN-------------IIIGRIP 170
              ++ +   +    + + +Q+          E+  D++ N             I IG+IP
Sbjct: 142  AVEEDIPLHELNDEQREEMQRTNEHPTTIRWELDRDKSHNPDEKISGEKMADMIYIGKIP 201

Query: 171  VMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----S 219
            VMVKS +C+++   + +      C +D GGYFII G+EKV +AQE+     + V      
Sbjct: 202  VMVKSRICYLRSQPESELFLLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKAQP 261

Query: 220  NSMGWTVAYKSENKRNRLIVRLVDM---SKFEDIKG--GEKV-LSVYFLSTEIPIWILFF 273
            N   +    +S  ++   +V  + M   SK +  +G  G+ + L++ + S ++PI I+F 
Sbjct: 262  NKYLYQAEIRSALEKGSRLVSTLTMKLTSKGDSTRGSFGQTIHLNLPYTSGDLPIAIVFR 321

Query: 274  ALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD-----EF---RKGRNA----- 320
            ALGV SD++I+N I     D  +L +L  SI +A    D     +F   R G++      
Sbjct: 322  ALGVVSDEDILNHIVLDKNDTQMLEMLRPSIEEAFCIQDREVALDFIAKRVGKDGGHSNS 381

Query: 321  ----LKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRR 376
                LK    +++  T P     E C             +KA FLGYMV  +LQ   GRR
Sbjct: 382  RHLRLKVARDILQKDTLPHISQAEGC-----------ETRKAFFLGYMVHKILQCALGRR 430

Query: 377  KCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASI 436
              D+RD F  KRL+LAG LL +  +  I      M   L+R +   R    +   L  + 
Sbjct: 431  DVDDRDHFGKKRLDLAGPLLAKLFRGIIRKLTNDMMGGLRRCIDAGRDF-DLTASLKPNT 489

Query: 437  LTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDAR 496
            LTNGL  + +TG W    K     +G+   L R     TL  LRRT   +   GK+   R
Sbjct: 490  LTNGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPR 549

Query: 497  YPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASY 555
              H +HWG +C   TP+G+ CGLVKNL +  +VS  +  EPI++ L   GM+ L +    
Sbjct: 550  QLHNTHWGLVCPAETPEGQACGLVKNLSLMCMVSVGTPAEPIYDFLVARGMDVLEEYEPS 609

Query: 556  SLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGR 615
            +     K+F++G W+GV       V  +   RR+  +  +V +  D  + E RIF DAGR
Sbjct: 610  NSSSTSKIFINGTWVGVANKIEELVDLVYDLRRKSRVDPEVSLIHDVREGEFRIFSDAGR 669

Query: 616  ILRPLLVV-------------------ENMGKIKSLEGKN--------YTFQALLDHGII 648
            ++RPL VV                   E++ K+ + +  N        Y +Q L   G++
Sbjct: 670  VMRPLFVVNQKDDPRTGAQAGSLVLTKEHVAKLHADKDNNLSPGDEGHYGWQGLKSDGVL 729

Query: 649  ELVGTEEEEDCCTAWGIKYL------------LKDIE--DKKPIK-------------FT 681
            +L+  E+EE          L            L ++E  DK  I              +T
Sbjct: 730  DLMDAEQEETAMICMSPSDLDKFRALKFGGATLDELEAFDKNDINRRLNTKINPTTHMYT 789

Query: 682  HCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFY 741
            HCE+  S LLG+   IIPF +H+ + R  YQS     QA+GF  TN + R+DT+++ L+Y
Sbjct: 790  HCEIHPSMLLGICASIIPFPDHNQSPRNCYQSAM-GKQAMGFFLTNYNRRMDTMANILYY 848

Query: 742  PQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLE 801
            PQ+PL  T   +            L   EL  GQNAIVA+  + GYNQEDS++MN+++++
Sbjct: 849  PQKPLGTTRSME-----------YLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSTID 897

Query: 802  RGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVN-FGK------IQSKIGRVDSLDDDGFP 854
            RG+FRS   RSY           ++R   +MV  F K      ++ K G  D L+DDG  
Sbjct: 898  RGLFRSLFFRSY--------TDSEKRVGINMVEKFEKPFRADTLRLKQGTYDKLEDDGIV 949

Query: 855  FIGANLQSGDIVIGKYADSGADH---------------SIKLKHTERGMVQKVVLSSNDD 899
              G  +   DI+IGK A   AD+               S  L+ TE G+V +V++++N D
Sbjct: 950  APGTRVSGEDIIIGKTAPIPADNQELGQRTVQHTKRDASTPLRSTESGIVDQVIVTTNQD 1009

Query: 900  GKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPS 959
            G  +  V +R  + P +GDKF+S HGQKG +G     E+ PFT +GI PDI+INPHA PS
Sbjct: 1010 GLKYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFTREGITPDIIINPHAIPS 1069

Query: 960  RQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLY 1019
            R T   L+E  L K +A L      G++  ATPF   +VD+++  L   G+   G E LY
Sbjct: 1070 RMTIAHLIECLLSK-VATL-----KGMEGDATPFTEVTVDSVSNLLREHGYQSRGFEVLY 1123

Query: 1020 DGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEM 1079
             G TG  +R+ +F GPT+YQRL HM +DK+  R  GPV+ +TRQPV  R R GG++FGEM
Sbjct: 1124 HGHTGRKLRAQVFFGPTYYQRLRHMVDDKIHARARGPVNIMTRQPVEGRARDGGLRFGEM 1183

Query: 1080 ERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDS 1139
            ERDC+IAHGAA+ L ERLF +SD+++ HIC  C     ++  +    RK     CR C +
Sbjct: 1184 ERDCMIAHGAASFLKERLFEVSDAFRAHICGIC----GLMTPIADLTRKTF--ECRPCRN 1237

Query: 1140 GDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
               I + ++PY AKLL QEL SM I  +  TE
Sbjct: 1238 KTKIAQVHIPYAAKLLFQELASMNIATRMFTE 1269


>gi|324120622|dbj|BAJ78702.1| RNA polymerase II second largest subunit [Karoophasma biedouwense]
          Length = 1176

 Score =  629 bits (1623), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 420/1222 (34%), Positives = 628/1222 (51%), Gaps = 134/1222 (10%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPS 74
            ++  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S
Sbjct: 16   EISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTS 75

Query: 75   KKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVY 134
             + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +     
Sbjct: 76   GEIENPPRYL-LKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLTYSAPLYVDI----- 128

Query: 135  TQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDC 188
                 T    K G      +E +  +     IG+IP+M++S  C + G+      E  +C
Sbjct: 129  -----TKTIVKDG------EEPIETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNEC 177

Query: 189  DFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVRL 241
              D GGYFII G+EKV +AQE++    ++V +      AYK+E       + R    + +
Sbjct: 178  PLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKFAYKAEIRSCLEHSSRPTSTLWV 237

Query: 242  VDMSKF-EDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
              M++  + IK    G+++++V  ++  EIPI I+F ALG  +D++I+  I +  +D  +
Sbjct: 238  NMMARGGQSIKKSAIGQRIIAVLPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 297

Query: 297  LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
            + ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C
Sbjct: 298  MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFC 357

Query: 343  MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                         +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL    + 
Sbjct: 358  -----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 403  HIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISG 462
               +  K +    Q+ +   +    +E  +   I+T+GL  + +TG W    K  +  +G
Sbjct: 407  LFKNLMKEVRMYAQKFIDRGKDFN-LELAIKTKIITDGLRYSLATGNWGDQKKAHQARAG 465

Query: 463  IVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKN 522
            +   L R     TL  LRR    +   GK+   R  H + WG IC   TP+G   GLVKN
Sbjct: 466  VSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKN 525

Query: 523  LGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVS 581
            L +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    ++
Sbjct: 526  LALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMA 585

Query: 582  ELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKS 631
             LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VEN         +  +K 
Sbjct: 586  TLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKRHIDMLKE 645

Query: 632  LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLL 691
             E  NY +Q L+  G++E + T EEE    A   + L ++ E      +THCE+  + +L
Sbjct: 646  REYNNYGWQVLVASGVVEYIDTLEEETVMIAMSPEDLRQEKEYAYCTTYTHCEIHPAMIL 705

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T  
Sbjct: 706  GVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRS 764

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
             +            L   EL  G N+IVA+  + GYNQEDS++MN +++ERG FRS   R
Sbjct: 765  ME-----------YLRFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGFFRSVFFR 813

Query: 812  SYK----AEVDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGD 864
            SYK      + ++E Q +   R++   M N           D LDDDG    G  +   D
Sbjct: 814  SYKDAESKRIGDQEEQFEKPTRQTCQGMRN--------ALYDKLDDDGIISPGIRVSGDD 865

Query: 865  IVIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLR 909
            +VIGK                  +  D S  L+++E G+V +V+L+ N +G  F  + +R
Sbjct: 866  VVIGKTITLPENDDELEGTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVR 925

Query: 910  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEA 969
             VR P +GDKF+S HGQKG  G    QE+ PFT +G+ PDI+INPHA PSR T G L+E 
Sbjct: 926  SVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIEC 985

Query: 970  ALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVR 1028
              GK   +  KG        ATPF    +V  I+  L   G+   G E +Y+G TG  + 
Sbjct: 986  LQGK--VSANKGEIGD----ATPFNDAVNVQKISTLLQEYGYHLRGNEVMYNGHTGRKIS 1039

Query: 1029 SLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG 1088
            + IF+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC IAHG
Sbjct: 1040 AQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHG 1099

Query: 1089 AAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKA 1146
            AA  L ERLF +SD Y++H+C  C    +AN+               C+ C +   I + 
Sbjct: 1100 AAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---------CKGCKNKTQISQV 1150

Query: 1147 NVPYGAKLLCQELFSMGITLKF 1168
             +PY AKLL QEL SM I  + 
Sbjct: 1151 RLPYAAKLLFQELMSMNIAPRL 1172


>gi|405120140|gb|AFR94911.1| DNA-directed RNA polymerase II large subunit [Cryptococcus neoformans
            var. grubii H99]
          Length = 1245

 Score =  629 bits (1623), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 420/1232 (34%), Positives = 645/1232 (52%), Gaps = 145/1232 (11%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            SFF E GLV  Q+ S+NEFI+N +Q+  D      ++     +     E R   + FGQ+
Sbjct: 59   SFFEEKGLVRQQLESFNEFIENTMQEIVDDHSRLTLDQFTQYTGVAGDETRRYEISFGQI 118

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             L + +    +G     +FP+ ARL+N+TYS+ + V ++ +  T   V  D  +   +  
Sbjct: 119  YLARVNHTEMDGRTNM-LFPQEARLRNLTYSAPLYVDIKKRTLTASGV-DDPVEADWQPA 176

Query: 152  I--QKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFIIKGAEK 203
            +    EV   E     IG++PVMV+S+ C + G+      E G+C +D GGYFII G+EK
Sbjct: 177  VGDDGEVEGAEEEKTSIGKVPVMVRSNFCLLHGLPDDQCHEIGECPYDQGGYFIISGSEK 236

Query: 204  VFVAQEQICLKRLWV-----SNSMGWTVAYKSENKR-----NRLIVRLVDMSKFEDIKGG 253
            V +AQE++    ++V          +     S+ ++     N   VR+   ++     GG
Sbjct: 237  VLIAQERMATNHVFVFLKAAPARFTYFAEINSQKEKGGRVANHTEVRMY--ARASGTTGG 294

Query: 254  EKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDE 313
               +S+ +   +IP+ ++F ALG+  D+++++ I F  ED ++L +L  SI ++    D 
Sbjct: 295  VIRVSLPYTKVDIPLVVVFRALGIVPDRDVLSHICFGAEDEALLEMLQPSIEESFAVQDR 354

Query: 314  FRKGRNALKYVDKLIKGTTFPPGE---STEECMNTYLFPSLHGTK----QKARFLGYMVK 366
                  AL ++ +  +    P  +   +  + ++    P +   +    +KA FLGYMV 
Sbjct: 355  ----DTALDFIGRRGQHEKAPRAQRQRAAFDILHKEFLPHVSTAEGFESKKAYFLGYMVH 410

Query: 367  CLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR 426
             L  A  GR++ D+RD F NKRL+LAG L+     V     R+ M + L++ +  ++   
Sbjct: 411  RLCMAALGRKELDDRDHFGNKRLDLAGPLMAEMFNVVFGKLREDMYRYLKKCVEQNK--- 467

Query: 427  PIEYYLDASI----LTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
              E+ L+ +I    +T+GL  A +TG W    KR    +G+   L R     TL  LRRT
Sbjct: 468  --EFALNMAIRPNTITDGLKYALATGNWG---KRDNTRAGVSQVLNRYTFTSTLSHLRRT 522

Query: 483  RQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQL 541
               +    K    R  H +HWG +C   TP+G  CGLVKNL +   +S  S   P+ E L
Sbjct: 523  NTPIGRDSKAAKPRQLHNTHWGMVCPAETPEGSACGLVKNLALMSYISVGSYSAPVMEFL 582

Query: 542  FNSGMEKLAD--DASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIK 599
               G+E L++  DA  +     KVFV+G W+G+ +D+ +  + L + RR  +L  +V I 
Sbjct: 583  EEWGLEDLSEYQDAPTAT----KVFVNGVWMGIHRDAPTLHNNLLQMRRGGQLKYEVSIV 638

Query: 600  RDELQSEVRIFMDAGRILRPLLVVE-----------NMGKIKSLEGKNY---TFQALLDH 645
            RD  + E+R++ DAGR+ RPL +V+           ++ +I  +  +      +  LL  
Sbjct: 639  RDIRERELRLYTDAGRVCRPLFIVDQPTQTLRLKRDHIDRIDQMADEGLLSGAWDKLLSE 698

Query: 646  GIIELVGTEEEE------------DCCTAWGIKYLLKD-----IEDKKPI---------- 678
            GI+E V   EEE            +  TA     L++D     +E   P           
Sbjct: 699  GIVEYVDAAEEETILIAMTPEDLVNARTAHSKHELVRDRAAHNLESFDPAARIKSTVWSQ 758

Query: 679  KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQ 738
            ++TH E+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DT+ + 
Sbjct: 759  QYTHMEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVCLTNYQLRMDTMVNV 817

Query: 739  LFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRA 798
            L+YPQ+PL  T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++
Sbjct: 818  LYYPQKPLATTRSME-----------YLKFSELPAGQNAIVAIMCYSGYNQEDSVIMNQS 866

Query: 799  SLERGMFRSEHIRSYKAEVDNKEMQ--VKRRSSDDMVNFGKIQSKIG---RVDSLDDDGF 853
            S++RG+FRS + RSY    D ++M+  VK  + +       ++ K G   R   LD DG 
Sbjct: 867  SIDRGLFRSLYFRSY---TDTEKMKGMVKAETIEKPDRNETLRMKHGTGDRYAKLDVDGL 923

Query: 854  PFIGANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSND 898
               G N+   DI+IGK A                +  D S  LK TE+G+V +V+LS+N 
Sbjct: 924  VAPGTNVNGDDILIGKTAPLPEDSEELGQRTQLHTKRDISTPLKSTEQGVVDQVMLSTNG 983

Query: 899  DGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFP 958
            +G  F  + +R  R P +GDKF+S HGQKG +G    QE+ PFT +G+VPDI+INPHA P
Sbjct: 984  EGNMFVKIRVRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGLVPDIIINPHAIP 1043

Query: 959  SRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERL 1018
            SR T G L+E  L K ++ L     +G +  ATPF   +V+A+++ L   G+   G E L
Sbjct: 1044 SRMTIGHLVECLLSK-VSTL-----TGAEGDATPFTELTVEAVSKVLRAKGYQSRGFELL 1097

Query: 1019 YDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGE 1078
            Y G TG  +++ ++ GPT+YQRL HM +DK+  R  GP+  LTRQPV  R R GG++FGE
Sbjct: 1098 YHGHTGRKLQAQVYFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGE 1157

Query: 1079 MERDCLIAHGAAANLHERLFTLSDSYQMHICRKC--KNVANVIQRVVGGGRKVRGPYCRI 1136
            MERDC+I+HG A  L ER++  SD++++H+C  C    VAN+         K +  YC +
Sbjct: 1158 MERDCMISHGIAGFLKERMYDSSDAFRIHVCDVCGLMAVANL---------KKQEFYCSV 1208

Query: 1137 CDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
            C +   I +  +PY AKLL QEL +M I  + 
Sbjct: 1209 CRNSTQISQVYIPYAAKLLFQELQAMNIACRM 1240


>gi|190346609|gb|EDK38735.2| hypothetical protein PGUG_02833 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1291

 Score =  629 bits (1623), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 419/1263 (33%), Positives = 649/1263 (51%), Gaps = 140/1263 (11%)

Query: 9    TDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVE 68
            +DP    D         C     SFF E GLVS Q++S++EFI++ +Q+        I++
Sbjct: 61   SDPYMYDDDSSSITPEDCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSRLILD 120

Query: 69   PGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVK 128
                 + + + E R   + FG++ + KP+   G+G   H MFP+ ARL+N+TYSS + V 
Sbjct: 121  QPAQHTSEEDHENRRYEITFGKIYISKPTQTEGDGTT-HPMFPQEARLRNLTYSSPLYVD 179

Query: 129  VQFQVYTQKRVTSDKFKTGREQYIQKEVLSDE--TTNIIIGRIPVMVKSDLCWMKGV--- 183
            +  +V      + D      E    +E + DE  +T + +G++P+M++S  C ++ +   
Sbjct: 180  MTKRVLK----SDDNAGNEHELEWIEEEIKDEEPSTKVYLGKVPIMLRSKFCMLRDLGEH 235

Query: 184  ---EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKR- 234
               E  +C +D GGYF+I G+EKV +AQE+     + V      + +      +S  +R 
Sbjct: 236  EFYELKECPYDMGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALERG 295

Query: 235  NRLIVRL-VDMSKFEDIKGGEKVL--SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTC 291
            +RLI  + + +   E+     + +  ++ ++  +IPI I+F ALG+  D +I+  I +  
Sbjct: 296  SRLISSMQIKLYGREEKSTSNRTIKATLPYIKEDIPIVIVFRALGIVPDGDILEHICYDA 355

Query: 292  EDCSILNILFAS------IHDADNKCDEF-RKGRNALKYVDKLIKGTTFPPGESTEECMN 344
             D  +L +L         I + +   D   R+G   +K   ++         +  ++ + 
Sbjct: 356  NDWQMLEMLKPCVEEGFVIQEREVALDFIGRRGALGIKREKRI---------QYAKDILQ 406

Query: 345  TYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLEREL 400
              L P++   +    +KA FLGYMV  LL     R++ D+RD F  KRL+LAG LL    
Sbjct: 407  KELLPNITQDEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLF 466

Query: 401  KVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERI 460
            ++      K +   +QR +  D+    +   + +  +T+GL  + +TG W    K     
Sbjct: 467  RILFKKLTKDIYNYMQRCVENDKVFN-LTLAVKSQTITDGLRYSLATGNWGEQKKAMSSR 525

Query: 461  SGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLV 520
            +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLV
Sbjct: 526  AGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLV 585

Query: 521  KNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSF 579
            KNL +   +S  +  EPI   L   GME L D    +     +VFV+G W+G  ++    
Sbjct: 586  KNLSLMSCISVGTPSEPILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHL 645

Query: 580  VSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVV------ENMGKIK--- 630
            V  +R  RRR ++  +V I RD  + E +IF DAGR+ RPL +V      E  G++K   
Sbjct: 646  VDTMRSLRRRGDISPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDPESETKGELKLQK 705

Query: 631  --------------------SLEGKNYTFQALLDHGIIELVGTEEEE------------- 657
                                  E   Y + +L++ G++E V  EEEE             
Sbjct: 706  EHIHKLLNAEYSEEYATNEFGEEEGPYGWSSLVNDGVVEYVDAEEEETIMIAMTPEDLEA 765

Query: 658  --DCCTAWGIKYLLKDIEDKKPIK------------FTHCELDMSFLLGLSCGIIPFANH 703
                 TA   K L  + ++  P K            FTHCE+  S +LG++  IIPF +H
Sbjct: 766  SKSSLTATQQKSLQLEEQELDPAKRIKPTNSSTTSTFTHCEIHPSMILGVAASIIPFPDH 825

Query: 704  DHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHN 763
            + + R  YQS     QA+G   TN S+R+DT+++ L+YPQ+PL  T              
Sbjct: 826  NQSPRNTYQS-AMGKQAMGVFLTNYSVRMDTMANILYYPQKPLATTR----------AME 874

Query: 764  HILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQ 823
            H+  R EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y  +++ ++  
Sbjct: 875  HLKFR-ELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRTY-MDLEKRQGM 932

Query: 824  VKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD----------- 872
                + +       ++ K G  + LDDDG    G  +   DI+IGK              
Sbjct: 933  KALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGIRVSGEDIIIGKTTPIPPDTEELGQR 992

Query: 873  ----SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKG 928
                +  D S  L+ TE G+V +V+L++N DG  F  V +R  + P +GDKF+S HGQKG
Sbjct: 993  TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKG 1052

Query: 929  VLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKR 988
             +G     E+ PFT QGIVPD++INPHA PSR T   L+E  L K +++L     SGL+ 
Sbjct: 1053 TVGVTYRHEDMPFTSQGIVPDLIINPHAIPSRMTVAHLIECLLSK-VSSL-----SGLEG 1106

Query: 989  YATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDK 1048
             A+PF   + +A+++ L   G+   G E +Y G TG+ + + +F GPT+YQRL HM +DK
Sbjct: 1107 DASPFTDVTAEAVSKLLREHGYQSRGFEVMYHGHTGKKLMAQVFFGPTYYQRLRHMVDDK 1166

Query: 1049 VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHI 1108
            +  R  GPV  LTRQPV  R R GG++FGEMERDC+IAHGAA  L ERL   SD++++H+
Sbjct: 1167 IHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHV 1226

Query: 1109 CRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
            C  C      +  V+   +K +   CR C +  +I + ++PY AKLL QEL +M I+ + 
Sbjct: 1227 CGVCG-----LMSVIANLKKNQFE-CRSCKNKTNIYQIHIPYAAKLLFQELMAMNISPRL 1280

Query: 1169 DTE 1171
             TE
Sbjct: 1281 YTE 1283


>gi|134110814|ref|XP_775871.1| hypothetical protein CNBD2790 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50258537|gb|EAL21224.1| hypothetical protein CNBD2790 [Cryptococcus neoformans var.
            neoformans B-3501A]
          Length = 1245

 Score =  629 bits (1623), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 419/1232 (34%), Positives = 645/1232 (52%), Gaps = 145/1232 (11%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            SFF E GLV  Q+ S+NEFI+N +Q+  D      ++     +     E R   + FGQ+
Sbjct: 59   SFFEEKGLVRQQLESFNEFIENTMQEIVDDHSRLTLDQFTQYTGVAGDETRRYEISFGQI 118

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             L + +    +G     +FP+ ARL+N+TYS+ + V ++ +  T   V  D  +   +  
Sbjct: 119  YLARVNHTEMDGRTNM-LFPQEARLRNLTYSAPLYVDIKKRTLTASGV-DDPVEADWQPA 176

Query: 152  I--QKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFIIKGAEK 203
            +    EV   E     IG++PVMV+S+ C + G+      E G+C +D GGYFII G+EK
Sbjct: 177  VGDDGEVEGAEEEKTSIGKVPVMVRSNFCLLHGLPDDQCHEIGECPYDQGGYFIISGSEK 236

Query: 204  VFVAQEQICLKRLWV-----SNSMGWTVAYKSENKR-----NRLIVRLVDMSKFEDIKGG 253
            V +AQE++    ++V          +     S+ ++     N   VR+   ++     GG
Sbjct: 237  VLIAQERMATNHVFVFLKAAPARFTYFAEINSQKEKGGRVANHTEVRM--YARASGTTGG 294

Query: 254  EKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDE 313
               +S+ +   +IP+ ++F ALG+  D+++++ I F  ED ++L +L  SI ++    D 
Sbjct: 295  VIRVSLPYTKVDIPLVVVFRALGIVPDRDVLSHICFGAEDEALLEMLQPSIEESFAVQDR 354

Query: 314  FRKGRNALKYVDKLIKGTTFPPGE---STEECMNTYLFPSLHGTK----QKARFLGYMVK 366
                  AL ++ +  +    P  +   +  + ++    P +   +    +KA FLGYMV 
Sbjct: 355  ----DTALDFIGRRGQHEKAPRAQRQRAAFDILHKEFLPHVSTAEGFESKKAYFLGYMVH 410

Query: 367  CLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR 426
             L  A  GR++ D+RD F NKRL+LAG L+     V     R+ M + L++ +  ++   
Sbjct: 411  RLCMAALGRKELDDRDHFGNKRLDLAGPLMAEMFNVVFGKLREDMYRYLKKCVEQNK--- 467

Query: 427  PIEYYLDASI----LTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
              E+ L+ +I    +T+GL  A +TG W    KR    +G+   L R     TL  LRRT
Sbjct: 468  --EFALNMAIRPNTITDGLKYALATGNWG---KRDNTRAGVSQVLNRYTFASTLSHLRRT 522

Query: 483  RQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQL 541
               +    K    R  H +HWG +C   TP+G  CGLVKNL +   +S  S   P+ E L
Sbjct: 523  NTPIGRDSKAAKPRQLHNTHWGMVCPAETPEGSACGLVKNLALMSYISVGSYSAPVMEFL 582

Query: 542  FNSGMEKLAD--DASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIK 599
               G+E L++  DA  +     KVFV+G W+G+ +D+ +  + L + RR  +L  +V I 
Sbjct: 583  EEWGLEDLSEYQDAPTAT----KVFVNGVWMGIHRDAPTLHNNLLQMRRGGQLKYEVSIV 638

Query: 600  RDELQSEVRIFMDAGRILRPLLVVE-----------NMGKIKSLEGKNY---TFQALLDH 645
            RD  + E+R++ DAGR+ RPL +V+           ++ +I  +  +      +  LL  
Sbjct: 639  RDIRERELRLYTDAGRVCRPLFIVDQPTQTLRLKRDHIDRIDQMADEGLLSGAWDKLLSE 698

Query: 646  GIIELVGTEEEE------------DCCTAWGIKYLLKD-----IEDKKPI---------- 678
            GI+E V   EEE            +  TA     L++D     +E   P           
Sbjct: 699  GIVEYVDAAEEETILIAMTPEDLVNARTAHSKHELVRDRAAHNLESFDPAARIKSTVWSQ 758

Query: 679  KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQ 738
            ++TH E+  S +LG+   I+PF +H+ + R  YQS     QA+G   TN  +R+DT+ + 
Sbjct: 759  QYTHMEIHPSMILGVCASIVPFPDHNQSPRNTYQS-AMGKQAMGVCLTNYQLRMDTMVNV 817

Query: 739  LFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRA 798
            L+YPQ+PL  T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++
Sbjct: 818  LYYPQKPLATTRSME-----------YLKFSELPAGQNAIVAIMCYSGYNQEDSVIMNQS 866

Query: 799  SLERGMFRSEHIRSYKAEVDNKEMQ--VKRRSSDDMVNFGKIQSKIG---RVDSLDDDGF 853
            S++RG+FRS + RSY    D ++M+  VK  + +       ++ K G   R   LD DG 
Sbjct: 867  SIDRGLFRSLYFRSY---TDTEKMKGMVKAETIEKPDRNETLRMKHGTGDRYAKLDVDGL 923

Query: 854  PFIGANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSND 898
               G N+   DI+IGK A                +  D S  LK TE+G+V +V+LS+N 
Sbjct: 924  VAPGTNVNGDDILIGKTAPLPEDSEELGQRTQLHTKRDISTPLKSTEQGVVDQVMLSTNG 983

Query: 899  DGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFP 958
            +G  F  + +R  R P +GDKF+S HGQKG +G    QE+ PFT +G+VPDI+INPHA P
Sbjct: 984  EGNMFVKIRVRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGLVPDIIINPHAIP 1043

Query: 959  SRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERL 1018
            SR T G L+E  L K ++ L     +G +  ATPF   +V+A+++ L   G+   G E L
Sbjct: 1044 SRMTIGHLVECLLSK-VSTL-----TGAEGDATPFTELTVEAVSKVLRAKGYQSRGFEVL 1097

Query: 1019 YDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGE 1078
            Y G TG  +++ ++ GPT+YQRL HM +DK+  R  GP+  LTRQPV  R R GG++FGE
Sbjct: 1098 YHGHTGRKLQAQVYFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGE 1157

Query: 1079 MERDCLIAHGAAANLHERLFTLSDSYQMHICRKC--KNVANVIQRVVGGGRKVRGPYCRI 1136
            MERDC+I+HG A  L ER++  SD++++H+C  C    VAN+         K +  YC +
Sbjct: 1158 MERDCMISHGIAGFLKERMYDSSDAFRIHVCDVCGLMAVANL---------KKQEFYCSV 1208

Query: 1137 CDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
            C +   I +  +PY AKLL QEL +M I  + 
Sbjct: 1209 CRNSTQISQVYIPYAAKLLFQELQAMNIACRM 1240


>gi|451994472|gb|EMD86942.1| hypothetical protein COCHEDRAFT_72858 [Cochliobolus heterostrophus
            C5]
          Length = 1208

 Score =  629 bits (1622), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 411/1214 (33%), Positives = 619/1214 (50%), Gaps = 166/1214 (13%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPG--YDPSKKGEG--EW 81
            C     SFF+  GLVS Q++SY+EF +N +Q      G  I+E    Y+P +      + 
Sbjct: 27   CWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGSVILEQNTPYNPDEDDNPIIKR 86

Query: 82   RYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTS 141
            RY  ++FG+V L +P+   G+G     ++P  ARL+N+TYS  M   ++ ++   +    
Sbjct: 87   RY-EIKFGRVYLARPTHTEGDGTTVQ-LYPHEARLRNLTYSGAMLADIENRIMVAREGRD 144

Query: 142  DK----------FKTGREQ--YIQKEVLSDETT--NIIIGRIPVMVKSDLCWMKGVEKGD 187
             +          +  G  Q  + ++++  D+ T   + IG++PVM++S+LC ++     D
Sbjct: 145  PEGDEDEDMEGGYTGGASQIRWEREDMPMDDGTAARVFIGKLPVMLRSELCHLRAQSDAD 204

Query: 188  ------CDFDHGGYFIIKGAEKVFVAQEQICLKRLWV----SNSMGWTVAYKSENKRNRL 237
                  C +D GGYF+I G+EKV +AQE+     + V       + W    +S  ++   
Sbjct: 205  LFALNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGPIPWIAEIRSAVEKGTR 264

Query: 238  IVRLVDMSKFED--------IKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDF 289
            ++   ++   E+        I G     ++ ++  ++P+ I+F ALG+ SD+EI++ I +
Sbjct: 265  LISSFNIKWAENSLAGPGKRIPGPFAYATLPYIKADVPMAIVFRALGIVSDEEILSHIVY 324

Query: 290  TCEDCSILNILFASIHDADNKCDE-------FRKGRNA------LKYVDKLIKGTTFPPG 336
               D  +L +L  SI +     D         ++G N+      LK+   +++   F P 
Sbjct: 325  DRTDTQMLELLKPSIEEGSVVQDRETALDFIAKRGANSGTKDRRLKFARDIMQ-REFLPH 383

Query: 337  ESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL 396
             S +E  +T          +KA F GYM+  LLQ   GRR  D+RD F  KRL+LAG L+
Sbjct: 384  ISQKEGQDT----------RKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLI 433

Query: 397  ERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKR 456
                ++      K + K LQR +  ++    ++  + ASI+TNGL  + +TG W    K 
Sbjct: 434  ANLFRILFLKLTKDVYKYLQRCVENNQDFN-VQMAVKASIITNGLKYSLATGNWGDQKKA 492

Query: 457  TERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGEN 516
                +G+   L R     TL  LRRT   V   GK+   R  H SHWG +C   TP+G+ 
Sbjct: 493  ASAKAGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQA 552

Query: 517  CGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKD 575
            CGLVKNL +   VS  S   PI + +    M+ L +          KVFV+G W+GV  +
Sbjct: 553  CGLVKNLSLMCYVSVGSDASPIIDFMTQRNMQLLEEYDQNQNPDATKVFVNGVWVGVHSN 612

Query: 576  SLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------- 625
            +   V+ ++  RR   L  ++ + RD    E +IF DAGR++RPL VVEN          
Sbjct: 613  AQQLVTVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENDIRKPNRNHL 672

Query: 626  ------MGKIKS---------------LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWG 664
                    K+K+               +E   Y ++ L+  G++E +  EEEE     + 
Sbjct: 673  IFTKEISNKLKAEQQETSTRQGWSQEEVEQATYGWRGLIQDGVVEYLDAEEEETAMITFS 732

Query: 665  IKYL-------------------------LKDIEDKKPIKFTHCELDMSFLLGLSCGIIP 699
             + L                         LK   D +   +THCE+  + +LG+   IIP
Sbjct: 733  PEDLEEWREMKMGLPAAERSTEGKDRLRRLKPQPDPRIHAYTHCEIHPAMILGICASIIP 792

Query: 700  FANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPG 759
            F +H+ + R  YQS     QA+G   TN ++R++T+ + L+YPQ+PL  T   +      
Sbjct: 793  FPDHNQSPRNTYQS-AMGKQAMGVALTNFALRMETMMNVLYYPQKPLATTRSME------ 845

Query: 760  YGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDN 819
                  L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y      
Sbjct: 846  -----YLKFRELPAGQNAIVAIATYGGYNQEDSVIMNQSSIDRGLFRSLFYRAYTE---- 896

Query: 820  KEMQVKRRSSDDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADS 873
               Q KR   + +  F K      ++ K G  D LDDDG    G  +   DI+IGK A  
Sbjct: 897  ---QEKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPI 953

Query: 874  GADH---------------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGD 918
             AD                S  L+ TE G+V +V+ ++N +G  F  V  R  + P +GD
Sbjct: 954  AADAQELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGD 1013

Query: 919  KFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAL 978
            KF+S HGQKG +G    QE+ PFT +G+ PD++INPHA PSR T   L+E  L K     
Sbjct: 1014 KFASRHGQKGTIGITYRQEDMPFTREGVTPDLIINPHAIPSRMTIAHLVECLLSK----- 1068

Query: 979  GKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFY 1038
              G  +G +  ATPF   +VD I++ L  AG+ K G E +Y+G TG+ +R+ IF+GPT+Y
Sbjct: 1069 -VGAITGQEGDATPFTDVTVDQISQLLEDAGYQKRGFEIMYNGHTGKKLRTQIFLGPTYY 1127

Query: 1039 QRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLF 1098
            QRL HM +DK+  R  GP+  LTRQPV  R R GG++FGEMERDC+IAHGAAA L ERLF
Sbjct: 1128 QRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLF 1187

Query: 1099 TLSDSYQMHICRKC 1112
            T+SD+Y +H+C  C
Sbjct: 1188 TVSDAYTVHVCDIC 1201


>gi|259485464|tpe|CBF82508.1| TPA: DNA-directed RNA polymerase Fragment (EC 2.7.7.6)
            [Source:UniProtKB/TrEMBL;Acc:Q9UV95] [Aspergillus
            nidulans FGSC A4]
          Length = 1252

 Score =  629 bits (1622), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 429/1263 (33%), Positives = 640/1263 (50%), Gaps = 141/1263 (11%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSK 75
            D+ E      C     SFF+  GLVS Q++S++EFI + LQ+  +  G+  ++    PS+
Sbjct: 15   DMDEGITSEDCWTVISSFFDTKGLVSQQLDSFDEFISSTLQELVEEQGQVTLDQTIPPSE 74

Query: 76   KGEGEW--RYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQV 133
                    R   ++FG V L +P    G+G     M P  ARL+NMTY+S + + ++ ++
Sbjct: 75   DEVDPVVVRRYELKFGTVMLSRPMAMEGDGA-ATIMLPHEARLRNMTYASPLYLGIKKKI 133

Query: 134  YT-QKRVTSDKFK--TGREQ------YIQKEVLS-------DETTNIIIGRIPVMVKSDL 177
               ++R+  D+     G E       Y+Q E ++       +ET +I  G++P+M+KS  
Sbjct: 134  MEGRERMVGDRDDDDMGNEDRKATGTYLQWEEMALPPDQAKEETVHI--GKMPIMLKSKY 191

Query: 178  CWMKGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKS 230
            C ++ +      +  +C +D GGYFII G+EKV +AQE+     + V   +      Y +
Sbjct: 192  CLLRDLGEQALYDWNECPYDSGGYFIINGSEKVLIAQERSAGNTVQVFKKAPPSPTPYVA 251

Query: 231  E-----NKRNRLI--VRLVDMSKFEDIKGG--EKVLSVY-FLSTEIPIWILFFALGVSSD 280
            E      K +RL+  + L    K +  KGG    + S   ++  +IPI I+F ALGV SD
Sbjct: 252  EIRSAVEKGSRLLSQLSLKLFGKGDSAKGGFGPTIRSTLPYIKADIPIVIVFRALGVVSD 311

Query: 281  KEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES-- 338
            ++I+N I +   D  +L +L   I +     D       AL ++ K     +    E   
Sbjct: 312  EDILNHICYDRNDTPMLEMLKPCIEEGFVIQDR----EVALDFIAKRGSSQSSMNHERRV 367

Query: 339  --TEECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELA 392
                E M   L P +  ++    +KA FLGYMV  LLQ   GRR  D+RD F  KRL+LA
Sbjct: 368  RYAREIMQKELLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLA 427

Query: 393  GELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSH 452
            G LL    +V      + + + +QR +  DR +  +   L AS +T GL  A +TG W  
Sbjct: 428  GPLLANLFRVLFTRVTRDLQRYVQRCVESDREIY-LNVGLKASTVTQGLRYALATGNWGE 486

Query: 453  PFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTP 512
              K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP
Sbjct: 487  QKKAASAKAGVSQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETP 546

Query: 513  DGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIG 571
            +G+ CGLVKNL +   ++  +  EPI + +    ME L +          KVFV+G W+G
Sbjct: 547  EGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVG 606

Query: 572  VCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK--- 628
            V +     V  ++  RRR  +  +V + RD  + E +IF DAGR+ RPL VV+N  K   
Sbjct: 607  VHRQPSHLVETMQALRRRNMISHEVSLIRDIREREFKIFTDAGRVCRPLFVVDNDPKSEN 666

Query: 629  ----------IKSLEG---------------KNYTFQALLDHGIIELVGTEEEEDCCTAW 663
                      I+ LE                + + +  L+  G++E V  EEEE      
Sbjct: 667  CGNLVLNKEHIRKLEEDKELPPDMDPEDRRERYFGWDGLVKSGVVEYVDAEEEETIMIVM 726

Query: 664  GIKYL---------------------LKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFAN 702
              + L                     ++ I  ++   +THCE+  S +LG+   IIPF +
Sbjct: 727  TPEDLEISKQLQAGYALPEEQDPNKRVRSILSQRAHTWTHCEIHPSMILGVCASIIPFPD 786

Query: 703  HDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGH 762
            H+ + R  YQS     QA+G   TN   R++T+++ L+YPQ+PL  T   +         
Sbjct: 787  HNQSPRNTYQS-AMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSME--------- 836

Query: 763  NHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEM 822
               L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y        +
Sbjct: 837  --FLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYSDSEKMVGL 894

Query: 823  QVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH----- 877
             V  R    M +   I  + G  D LD+DG    G  +   DI+IGK A    D      
Sbjct: 895  TVVERFEKPMRS-DTIGMRKGTYDKLDEDGIVNPGVRVSGEDIIIGKTAPLAPDAEELGQ 953

Query: 878  ----------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQK 927
                      S  L+ TE G+V +V++++  D      V +R  + P +GDKF+S HGQK
Sbjct: 954  RTKNHTKLDVSTPLRSTENGIVDQVLVTTTPDSLRSVKVRMRMTKVPQIGDKFASRHGQK 1013

Query: 928  GVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLK 987
            G +G    QE+ PFT +G+ PD++INPHA PSR T   L+E  L K ++AL      G +
Sbjct: 1014 GTIGITYRQEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSK-VSAL-----RGFE 1067

Query: 988  RYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSED 1047
              ATPF   +VD+I+  L   G+   G E +Y+G TG  + + +F+GPT+YQRL HM +D
Sbjct: 1068 GDATPFTDVTVDSISRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDD 1127

Query: 1048 KVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMH 1107
            K+  R  GP   LTRQPV  R R GG++FGEMERDC+IAHGA+A L ERLF +SD +++H
Sbjct: 1128 KIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVH 1187

Query: 1108 ICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLK 1167
            IC  C  +   I ++  G  +     CR+C++   I + ++PY AKLL QEL +M I+ +
Sbjct: 1188 ICDDC-GLMTPIAKLKKGLFE-----CRLCNNKHRISQVHIPYAAKLLFQELAAMNISAR 1241

Query: 1168 FDT 1170
              T
Sbjct: 1242 MFT 1244


>gi|324120652|dbj|BAJ78717.1| RNA polymerase II second largest subunit [Bemisia tabaci]
          Length = 1176

 Score =  629 bits (1622), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 421/1236 (34%), Positives = 633/1236 (51%), Gaps = 135/1236 (10%)

Query: 2    DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-D 60
            D +D+ + D  S  ++  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   D
Sbjct: 3    DLEDDNYGDEDS-GEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 61   SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
            S    +       S + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+T
Sbjct: 62   SPQIDLQAEAQHTSGEIETPPRYL-LKFEQIYLSKPTHWEKDGSPS-PMMPNEARLRNLT 119

Query: 121  YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
            YS+ + V +          T    K G+E  +       E     IG+IP+M++S  C +
Sbjct: 120  YSAPLYVDI----------TKTVIKDGQEPVVT------EHEKSFIGKIPIMLRSTFCLL 163

Query: 181  KGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE--- 231
             G+      E  +C  D GGYFII G+EKV +AQE++    ++V +      AYK+E   
Sbjct: 164  SGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKAEIRS 223

Query: 232  ----NKRNRLIVRLVDMSKF-EDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKE 282
                + R    + +  M++  + IK    G++++++  ++  EIPI I+F ALG  +D++
Sbjct: 224  CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283

Query: 283  IVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLI 328
            I+  I +  +D  ++ ++  S+ +A      N    F   R A         +KY  +++
Sbjct: 284  ILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKDKRIKYAREIL 343

Query: 329  KGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKR 388
            +    P    ++ C             +KA FLGYMV  LL A  GRR+ D+RD + NKR
Sbjct: 344  QKEMLPHVGVSDFC-----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKR 392

Query: 389  LELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTG 448
            L+LAG LL    +    +  K +    Q+ +   +    +E  +   I+T+GL  + +TG
Sbjct: 393  LDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFN-MELAIKTKIITDGLRYSLATG 451

Query: 449  AWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICF 508
             W    K  +  +G+   L R     TL  LRR    +   GK+   R  H + WG IC 
Sbjct: 452  NWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICP 511

Query: 509  LSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDG 567
              TP+G   GLVKNL +   +S  S   PI E L    ME L + A  ++    K+FV+G
Sbjct: 512  AETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNG 571

Query: 568  DWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN- 625
             W+G+ +D    +  LR+ RR+ ++  ++V I RD    E+RI+ DAGRI RPLL+VEN 
Sbjct: 572  CWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIYTDAGRICRPLLIVENQ 631

Query: 626  --------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKP 677
                    +  +K  +  NY +Q L+  G++E + T EEE    A   + L +D E    
Sbjct: 632  TLLLKRSHVDNLKQRDYNNYKWQELVSSGVVEYIDTLEEETTMIAMSPEDLRQDKEYAYC 691

Query: 678  IKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSH 737
              +THCE+  + +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H
Sbjct: 692  TTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNYHVRMDTLAH 750

Query: 738  QLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNR 797
             L+YP +PL  T   +            L   EL  G N+IVA+  + GYNQEDS+++N 
Sbjct: 751  VLYYPHKPLVTTRSME-----------YLRFRELPAGINSIVAILCYTGYNQEDSVILNA 799

Query: 798  ASLERGMFRSEHIRSYK----AEVDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDD 850
            +++ERG FRS   RSYK      + ++E Q +   R +   M N           D LDD
Sbjct: 800  SAVERGFFRSVFFRSYKDSESKRIGDQEEQFEKPNRSTCQGMRN--------AIYDKLDD 851

Query: 851  DGFPFIGANLQSGDIVIGKYAD---------------SGADHSIKLKHTERGMVQKVVLS 895
            DG    G  +   D+VIGK                  S  D S  L+++E G+V +V+L+
Sbjct: 852  DGIIAPGLRVSGDDVVIGKTITLPENDDELEGTTKRYSKRDASTFLRNSETGIVDQVMLT 911

Query: 896  SNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPH 955
             N +G  F  + +R VR P +GDKF+S HGQKG  G    QE+ PFT +G+ PDI+INPH
Sbjct: 912  LNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLAPDIIINPH 971

Query: 956  AFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWG 1014
            A PSR T G L+E   GK   +  KG        ATPF    +V  I+  L   G+   G
Sbjct: 972  AIPSRMTIGHLIECLQGK--VSSNKGEIGD----ATPFNDAVNVQKISTLLQEYGYQLRG 1025

Query: 1015 TERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGI 1074
             E +Y+G +G  + + +F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG+
Sbjct: 1026 NEVMYNGHSGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGL 1085

Query: 1075 KFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGP 1132
            +FGEMERDC I+HGAA  L ERLF +SD Y++H+C  C    +AN+              
Sbjct: 1086 RFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNYCGLIAIANLRNNTFE-------- 1137

Query: 1133 YCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
             C+ C +   I +  +PY AKLL QEL +M I  + 
Sbjct: 1138 -CKGCKNKTQISQVRLPYAAKLLFQELMAMNIAPRL 1172


>gi|324120648|dbj|BAJ78715.1| RNA polymerase II second largest subunit [Cryptotympana facialis]
          Length = 1175

 Score =  628 bits (1620), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 421/1222 (34%), Positives = 626/1222 (51%), Gaps = 134/1222 (10%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPS 74
            ++  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S
Sbjct: 16   EISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTS 75

Query: 75   KKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVY 134
             + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +     
Sbjct: 76   GEIETPPRYL-LKFEQIYLSKPTHWEKDGSPS-PMMPNEARLRNLTYSAPLYVDI----- 128

Query: 135  TQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDC 188
                 T    K G      ++ +  +     IG+IP+M++S  C + G+      E  +C
Sbjct: 129  -----TKTIVKEG------EDPIETQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNEC 177

Query: 189  DFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVRL 241
              D GGYFII G+EKV +AQE++    ++V +      AYK+E       + R    + +
Sbjct: 178  PLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKFAYKAEIRSCLEHSSRPTSTLWV 237

Query: 242  VDMSKF-EDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
              M++  + IK    G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  +
Sbjct: 238  NMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 297

Query: 297  LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
            + ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C
Sbjct: 298  MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFC 357

Query: 343  MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                         +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL    + 
Sbjct: 358  -----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 403  HIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISG 462
               +  K +    Q+ +   +    +E  +   I+T+GL  + +TG W    K  +  +G
Sbjct: 407  LFKNLMKEVRMYAQKFIDRGKDFN-LELAIKTKIITDGLRYSLATGNWGDQKKAHQARAG 465

Query: 463  IVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKN 522
            +   L R     TL  LRR    +   GK+   R  H + WG IC   TP+G   GLVKN
Sbjct: 466  VSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKN 525

Query: 523  LGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVS 581
            L +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    + 
Sbjct: 526  LALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMG 585

Query: 582  ELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKS 631
             LR+ RR+ ++  ++V I RD    E+RI+ DAGRI RPLL+VEN         +  +K 
Sbjct: 586  TLRKLRRQMDIIVSEVSIIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKRHIDNLKE 645

Query: 632  LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLL 691
             +  NY +Q L+  G++E + T EEE    A     L +D E      +THCE+  + +L
Sbjct: 646  RDYNNYGWQVLVSSGVVEYIDTLEEETTMIAMSPDDLRQDKEYAYCTTYTHCEIHPAMIL 705

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T  
Sbjct: 706  GVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRS 764

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
             +            L   EL  G N+IVA+  + GYNQEDS+++N +++ERG FRS   R
Sbjct: 765  ME-----------YLRFRELPAGINSIVAIACYTGYNQEDSVILNASAVERGFFRSVFFR 813

Query: 812  SYK----AEVDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGD 864
            SYK      V ++E Q +   R++   M N           D LDDDG    G  +   D
Sbjct: 814  SYKDAESKRVGDQEEQFEKPTRQTCQGMRN--------AIYDKLDDDGIIAPGLRVSGDD 865

Query: 865  IVIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLR 909
            +VIGK                  +  D S  L+++E G+V +V+L+ N +G  F  + +R
Sbjct: 866  VVIGKTMTLPDNEDELEGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVR 925

Query: 910  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEA 969
             VR P +GDKF+S HGQKG  G    QE+ PFT +GI PDI+INPHA PSR T G L+E 
Sbjct: 926  SVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGISPDIIINPHAIPSRMTIGHLIEC 985

Query: 970  ALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVR 1028
              GK   +  KG        ATPF    +V  I+  L   G+   G E +Y+G TG  + 
Sbjct: 986  LQGK--VSANKGEIGD----ATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKIN 1039

Query: 1029 SLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG 1088
            + IFIGPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC IAHG
Sbjct: 1040 AQIFIGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHG 1099

Query: 1089 AAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKA 1146
            AA  L ERLF +SD Y++H+C  C    +AN+               C+ C +   I + 
Sbjct: 1100 AAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---------CKGCKNKTQISQV 1150

Query: 1147 NVPYGAKLLCQELFSMGITLKF 1168
             +PY AKLL QEL SM I  + 
Sbjct: 1151 RLPYAAKLLFQELMSMNIAPRL 1172


>gi|348676682|gb|EGZ16499.1| hypothetical protein PHYSODRAFT_262616 [Phytophthora sojae]
          Length = 1171

 Score =  628 bits (1620), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 404/1195 (33%), Positives = 610/1195 (51%), Gaps = 122/1195 (10%)

Query: 36   EYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP--GYDPSKKGEGEWRYASMRFGQVTL 93
            E GLV  Q++S++EFI+N +Q+  D      + P   Y P +         ++ FGQ+ L
Sbjct: 27   EKGLVRQQLDSFDEFIQNTMQELVDDSRSIRINPEAQYAPGQAKANTDTIYNISFGQIYL 86

Query: 94   DKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQ 153
             KP+    +G     MFP  ARL+N+TYS+ + V V    Y Q                 
Sbjct: 87   SKPTMTEADGSTS-VMFPHEARLRNLTYSAPLYVDVDMDPYDQV---------------- 129

Query: 154  KEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVA 207
                  ET    IG +P+M++S  C +         E  +C +D GGYFII G+EKV +A
Sbjct: 130  ------ETPKEFIGMVPIMLRSQYCVLTHKTDKELTELNECVYDQGGYFIINGSEKVLIA 183

Query: 208  QEQICLKRLW-----VSNSMGWTVAYKSENKR-----NRLIVRLVDMSKFEDIKGGEKVL 257
            QE++    ++      ++   W    +S  +      + + V++   S  +    G ++ 
Sbjct: 184  QERMSNNHVYCFRKNAASKYSWVCETRSHVEHGVRPTSTMYVQMYQKSGGKSAITGNQIR 243

Query: 258  SVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRK 316
            +V  ++  +IP+ I+F ALG  +D+EI+  I +   D  ++    +S+ +A       ++
Sbjct: 244  AVIPYIRQDIPVVIIFRALGFVADREILEHICYDFSDAELMERFKSSLEEAF----VIQE 299

Query: 317  GRNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSL----HGTKQKARFLGYMVKC 367
               AL ++ +  +G+     ++      ++ +   + P +    H   +KA FLGY+V  
Sbjct: 300  QEVALDFIGR--RGSAINVSKADRIRYAQDILQKEMLPHVGVEDHNETKKAYFLGYVVHK 357

Query: 368  LLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRP 427
            LL    GR   D+RD + NKRL+LAG LL    ++      K +   LQ+ +   +    
Sbjct: 358  LLMCSLGRIGEDDRDHYGNKRLDLAGPLLGGLFRILFKKLTKDVKSFLQKCVDNGKDFN- 416

Query: 428  IEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQ 487
            +   + +  +TNGL  + +TG W    +++   +G+   L R     +L  LRR    + 
Sbjct: 417  LTLAIRSRTITNGLRYSLATGNWG--MQKSASKAGVSQVLNRLTYASSLSHLRRLNTPLG 474

Query: 488  YTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGM 546
              GK    R  H +HWG IC   TP+G+  GLVKNL +   +S  S   PI E L     
Sbjct: 475  REGKQAQPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYISVGSPQAPILEFLEEWAT 534

Query: 547  EKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSE 606
            E L +     +    K+FV+G+W+GV ++    +  LR  RR  ++  +V + RD +  E
Sbjct: 535  ENLEEIKPQIIPHSTKIFVNGNWVGVHREPNELIRTLRSLRRCVDIDAEVSVIRDLMNKE 594

Query: 607  VRIFMDAGRILRPLLVVEN---------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEE 657
            +RI+ DAGR+ RPL +VE+         + K+++ +  NY +  LL  G++EL+ TEEEE
Sbjct: 595  LRIYTDAGRVCRPLFIVEDNQLLLQKEQVVKLQNHKITNYRWHNLLTDGVVELIDTEEEE 654

Query: 658  DCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHS 717
             C  A   K    D+     I  THCE+  S +LG+   IIPF +H+ + R  YQS    
Sbjct: 655  VCMIAMEPK----DVGTGSQIH-THCEIHPSMILGICASIIPFPDHNQSPRNTYQSAM-G 708

Query: 718  SQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNA 777
             QA+G   +N   R+DT+++ L YPQ+PL  T   +      Y H   LP     +G NA
Sbjct: 709  KQAMGIYCSNFRARMDTMANVLNYPQKPLVTTRAME------YLHFRELP-----SGINA 757

Query: 778  IVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK 837
            IV +  + GYNQEDSL+MN+++++RG FRS   R Y  +  NK             N  +
Sbjct: 758  IVGIASYTGYNQEDSLIMNQSAIDRGFFRSTFYRCYIDQERNKSPHGGPGGGAGGANCEE 817

Query: 838  IQS---------KIGRVDSLDDDGFPFIGANLQSGDIVIGKYA------DSGA------- 875
             +          + G    LD+DG    G  +   DI+IGK +      DS         
Sbjct: 818  FEKPSRENCLGLRHGSYHKLDNDGLVAPGTRVSGNDIIIGKTSPLPQSEDSSLEQRHQKR 877

Query: 876  DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLES 935
            D S  L+  E G++  V+L++N DG  F+ V  R +R P +GDKF+S HGQKG +G    
Sbjct: 878  DASTALRSHENGIIDSVMLTTNADGFKFTKVRFRNIRVPQIGDKFASRHGQKGTIGMTYR 937

Query: 936  QENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFAT 995
            QE+ PFT++GI PDIV+NPHA PSR T G L+E  LGK  +  G       +  ATPF  
Sbjct: 938  QEDMPFTVEGITPDIVVNPHAIPSRMTVGHLVECLLGKVSSQTGD------EGDATPFTD 991

Query: 996  PSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTG 1055
             +V AI + LH  G+ K G E +Y G TG  + + IFIGPTFYQRL HM +DK+  R+ G
Sbjct: 992  VTVQAIADTLHNLGYQKHGNEVMYSGHTGRRLTAQIFIGPTFYQRLKHMVDDKIHSRSRG 1051

Query: 1056 PVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNV 1115
            PV  LTRQP+  R R GG++ GEMERDCLI+HG+A  L +RLF  SD+Y++H+C  C  +
Sbjct: 1052 PVTMLTRQPMEGRAREGGLRMGEMERDCLISHGSANFLMDRLFANSDAYRVHVCDICGII 1111

Query: 1116 ANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
            A      +   RK+    CR C +   I + ++PY  KLL QEL +M I  +  T
Sbjct: 1112 A------IANLRKMTFE-CRTCRNKTQISQVHIPYSCKLLFQELMAMSIAPRLFT 1159


>gi|324120634|dbj|BAJ78708.1| RNA polymerase II second largest subunit [Forficula hiromasai]
          Length = 1174

 Score =  628 bits (1619), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 423/1225 (34%), Positives = 633/1225 (51%), Gaps = 142/1225 (11%)

Query: 17   LGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPSK 75
            +  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       + 
Sbjct: 16   ISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIELQAEAQHTAG 75

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT 135
            + E   +Y  ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +      
Sbjct: 76   EIENPPKYL-LKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLTYSAPLYVDIT----- 128

Query: 136  QKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCD 189
             K +  DK          +E +  +     IG+IP+M++S  C + G+      E  +C 
Sbjct: 129  -KTIIKDK----------EEPIETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECP 177

Query: 190  FDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVRLV 242
             D GGYFII G+EKV +AQE++    ++V +      AYKSE       + R    + + 
Sbjct: 178  LDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKSEIRSCLEHSSRPTSTLWVN 237

Query: 243  DMSKF-EDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSIL 297
             M++  + IK    G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  ++
Sbjct: 238  MMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMM 297

Query: 298  NILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEECM 343
             ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C 
Sbjct: 298  EMVKPSLDEAFVIQEQNVALNFIGARGARPGVTREKRIKYAREILQKEMLPHVGVSDFC- 356

Query: 344  NTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVH 403
                        +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL       
Sbjct: 357  ----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLL------- 399

Query: 404  IAHARKRMAKALQRD--LYGDRTV-RPIEYYLDASI----LTNGLSRAFSTGAWSHPFKR 456
             A   + + K L ++  +Y  + + R  ++ LD +I    +T+GL  + +TG W    K 
Sbjct: 400  -AFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLDLAIKTKIITDGLRYSLATGNWGDQKKA 458

Query: 457  TERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGEN 516
                +G+   L R     TL  LRR    +   GK+   R  H + WG IC   TP+G  
Sbjct: 459  HMARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 518

Query: 517  CGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKD 575
             GLVKNL +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D
Sbjct: 519  VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 578

Query: 576  SLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN--------- 625
                ++ LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VEN         
Sbjct: 579  PEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGNLLLKKHH 638

Query: 626  MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCEL 685
            +  +K  E  NY +Q L+  G++E + T EEE    A     L ++ E      +THCE+
Sbjct: 639  IDMLKEREHNNYGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQEKEYAYCTTYTHCEI 698

Query: 686  DMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRP 745
              + +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +P
Sbjct: 699  HPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 757

Query: 746  LFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMF 805
            L  T   +            L   EL  G N+IVA+  + GYNQEDS++MN +++ERG+F
Sbjct: 758  LVTTRSME-----------YLRFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGLF 806

Query: 806  RSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGR------VDSLDDDGFPFIGAN 859
            RS   RSYK   D++     +R+ D    F K   +  +       D LDDDG    G  
Sbjct: 807  RSVFYRSYK---DSE----SKRNGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIISPGLR 859

Query: 860  LQSGDIVIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFS 904
            +   D+VIGK                  +  D S  L+++E G+V +V+L+ N +G  F 
Sbjct: 860  VSGDDVVIGKTITLPENEDELDGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFC 919

Query: 905  VVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPG 964
             + +R VR P +GDKF+S HGQKG  G    QE+ PFT +G+ PDI+INPHA PSR T G
Sbjct: 920  KIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIG 979

Query: 965  QLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRT 1023
             L+E   GK   +  KG        ATPF    +V  I+  L   G+   G E +Y+G T
Sbjct: 980  HLIECLQGK--VSSNKGEIGD----ATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHT 1033

Query: 1024 GEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDC 1083
            G  + + IF+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC
Sbjct: 1034 GRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDC 1093

Query: 1084 LIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDI 1143
             IAHGAA  L ERLF +SD Y++HIC  C  +A      +   R      C+ C +   I
Sbjct: 1094 QIAHGAAQFLRERLFEVSDPYRIHICNLCGLIA------IANMRN-NTFECKGCKNKTQI 1146

Query: 1144 VKANVPYGAKLLCQELFSMGITLKF 1168
             +  +PY AKLL QEL SM I  + 
Sbjct: 1147 SQVKLPYAAKLLFQELMSMNIAPRL 1171


>gi|402294651|gb|AFQ55279.1| DNA-directed RNA polymerase II [Peltigera membranacea]
          Length = 1255

 Score =  628 bits (1619), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 424/1257 (33%), Positives = 641/1257 (50%), Gaps = 146/1257 (11%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW-RYA 84
            C     SFF+  GLVS Q++S++EF+   +Q+         ++    PS   +    R  
Sbjct: 25   CWTVISSFFDSKGLVSQQLDSFDEFVSTTMQELVAENAILTLDQNAPPSDSDDPVLIRRY 84

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVY---------- 134
             ++FG V L +P+   G+G     M P+ ARL+N+TYSS + +++  +V           
Sbjct: 85   EIKFGTVLLSRPAMTEGDGSTSA-MLPQEARLRNLTYSSPLYLEMTKKVSVARERVAVEN 143

Query: 135  ----------TQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVE 184
                      TQKR  +D      +  I+      + + + +G++P+M+KS  C +K + 
Sbjct: 144  ADEDPNPDSDTQKRFGAD---ANLDWVIEDGEDDQDPSKVFVGKLPIMLKSKYCILKDLG 200

Query: 185  K------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE-----N 232
            +       +C +D GGYF+I G+EKV +AQE+     + V   +      Y +E      
Sbjct: 201  ETELYNWNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAPPSATPYIAEIRSAVE 260

Query: 233  KRNRLI--VRLVDMSKFEDIKGG--EKV-LSVYFLSTEIPIWILFFALGVSSDKEIVNLI 287
            K +RLI  +++   +K E+ KGG  + V  ++ ++ T++PI I+F  LG+ SD++I+N I
Sbjct: 261  KGSRLISSMQIKLFAKGENHKGGFGQTVKATLPYVKTDVPIGIVFRGLGIVSDEDILNHI 320

Query: 288  DFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTE---ECMN 344
             +   D  +L  L   I +A    D       AL ++       +    +  +   + M 
Sbjct: 321  CYDRNDTQMLEKLKPCIEEAFVIQDR----EVALDWIGSRGNSQSLSRPKRVKYARDIMQ 376

Query: 345  TYLFPSLHGT----KQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLEREL 400
              L P +  T     +KA FLGYMV  +LQ   GRR+ D+RD F  KRL+LAG LL    
Sbjct: 377  KELLPHISQTDGSETKKAFFLGYMVHRMLQCALGRREVDDRDHFGKKRLDLAGPLLAGLF 436

Query: 401  KVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERI 460
            ++      K + K LQ+ +  +R    +   + ++ LTNGL  + +TG W    K     
Sbjct: 437  RMLFNKLTKDVFKYLQKCVENNREFN-LTLGVKSTTLTNGLKYSLATGNWGDQKKAASSK 495

Query: 461  SGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLV 520
            +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLV
Sbjct: 496  AGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLV 555

Query: 521  KNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSF 579
            KNL +   ++  +  EPI + +    ME L +          KVFV+G W+GV +D    
Sbjct: 556  KNLALMCYITVGTPCEPIIDFMNQRNMEMLEEYEPLRSPNATKVFVNGVWVGVHRDPAHL 615

Query: 580  VSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE------NMGKI---- 629
            VS ++  RR   +  +V + RD    E +IF DAGR+ RPL V++      N G +    
Sbjct: 616  VSNVQDLRRGHIISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDTRSMNYGNLVLTK 675

Query: 630  ------------------KSLEGKNYTFQALLDHGIIELVGTEEEE---------DCCTA 662
                                LE +   +  L++ G++E V  EEEE         D  T+
Sbjct: 676  EHITRLEEDKEAAIGMDRDELEARQMGWDGLVNQGVVEYVDAEEEETVMIVMTPGDLETS 735

Query: 663  WGI---KYLLKDIED-----------KKPIKFTHCELDMSFLLGLSCGIIPFANHDHARR 708
              I   K + ++ ED           +    +THCE+  S +LG+   IIPF +H+ + R
Sbjct: 736  RQIQLGKAVPENAEDEPNKRVNAMSHRSAQTWTHCEIHPSMILGICASIIPFPDHNQSPR 795

Query: 709  VLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPR 768
              YQS     QA+G   TN   R+DT+++ L+YPQ+P+  T   +            L  
Sbjct: 796  NTYQS-AMGKQAMGVFLTNYDQRMDTMANILYYPQKPMATTRSME-----------FLKF 843

Query: 769  PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRS 828
             EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   RSY  +     M +  + 
Sbjct: 844  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSIVEQF 903

Query: 829  SDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA----DSGA--------- 875
               M     ++ K G  + LDDDG    G  +   D++IGK A    DS           
Sbjct: 904  EKPM-RTDTLRLKHGTYEKLDDDGIVAPGVRVSGEDMIIGKTAPIPPDSEELGQRTKMHI 962

Query: 876  --DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
              D S  L+ TE G+V +V+L++N +G  F  V +R  + P +GDKF+S HGQKG +G  
Sbjct: 963  KRDASTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 1022

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
              QE+ PFT +G+VPD++INPHA PSR T   L+E  L K ++AL      G +  ATPF
Sbjct: 1023 YRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSK-VSAL-----RGFEGDATPF 1076

Query: 994  ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
               +VD++++ L   G+   G E +Y+  TG+ + + +F+GPT+YQRL HM +DK+  R 
Sbjct: 1077 TEVTVDSVSKILRAHGYQSRGFEVMYNAHTGQKLVAQVFLGPTYYQRLRHMVDDKIHARA 1136

Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
             GPV  LTRQPV  R R GG++FGEMERDC+IAHGA+A L ERLF +SD++++HIC  C 
Sbjct: 1137 RGPVQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFEVSDAFRVHICDICG 1196

Query: 1114 NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
             +  V         K     CR C +   I + ++PY AKLL QEL SM I  +  T
Sbjct: 1197 LMTPV------ANLKKNSFECRPCKNKTRISQVHIPYAAKLLFQELASMNIAARMYT 1247


>gi|324120596|dbj|BAJ78689.1| RNA polymerase II second largest subunit [Lepidocampa weberi]
          Length = 1179

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 418/1233 (33%), Positives = 634/1233 (51%), Gaps = 134/1233 (10%)

Query: 2    DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-D 60
            +++D+ + +   + ++  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   D
Sbjct: 6    EAEDDVYGEDEEMEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVED 65

Query: 61   SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
            S    +       + + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+T
Sbjct: 66   SPQIDLQAEAQHTTGEVETPPRYL-LKFEQIYLSKPTHWEKDGAPT-PMMPNEARLRNLT 123

Query: 121  YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
            YS+ + V +          T    K G      +E +  +     IG+IP+M++S  C +
Sbjct: 124  YSAPLYVDI----------TKSVIKEG------EEAIETQHQKTFIGKIPIMLRSTYCLL 167

Query: 181  KGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR 234
             G+      E  +C  D GGYFII G+EKV +AQE++    ++V +      AYK+E + 
Sbjct: 168  NGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKAEIRS 227

Query: 235  ---------NRLIVRLVDMSKFEDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDK 281
                     + L V ++     + IK    G+++++V  ++  EIPI I+F ALG  +D+
Sbjct: 228  CLEHSSRPTSTLWVNMLARGG-QSIKKSAIGQRIIAVVPYIKQEIPIMIVFRALGFVADR 286

Query: 282  EIVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKL 327
            +I+  I +  +D  ++ ++  S+ +A      N    F   R A         +KY  ++
Sbjct: 287  DILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVALNFIGARGARPGVTKEKRIKYAREI 346

Query: 328  IKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNK 387
            ++    P    ++ C             +KA FLGYMV  LL A  GRR+ D+RD + NK
Sbjct: 347  LQKEMLPHVGVSDFC-----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNK 395

Query: 388  RLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFST 447
            RL+LAG LL    +    +  K +    Q+ +   +    +E  +   I+T+GL  + +T
Sbjct: 396  RLDLAGPLLAFLFRGLFKNLLKEVRIYSQKFIDRGKDFN-LELAIKTRIITDGLRYSLAT 454

Query: 448  GAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKIC 507
            G W    K  +  +G+   L R     TL  LRR    +   GK+   R  H + WG IC
Sbjct: 455  GNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMIC 514

Query: 508  FLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVD 566
               TP+G   GLVKNL +   +S  S   PI E L    ME L + A  ++    K+FV+
Sbjct: 515  PAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVN 574

Query: 567  GDWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVE- 624
            G W+G+ +D    +S LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VE 
Sbjct: 575  GCWVGIHRDPEQLMSTLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVEG 634

Query: 625  --------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKK 676
                    ++  +K  E  NY +Q L+  G++E + T EEE    A   + L +D E   
Sbjct: 635  GRLALKKRHIEMLKEREYNNYGWQDLVASGVVEYIDTLEEETVMIAMSPEDLRQDKEYAY 694

Query: 677  PIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLS 736
               +THCE+  + +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+
Sbjct: 695  CTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLA 753

Query: 737  HQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMN 796
            H LFYPQ+PL  T   +            L   EL  G N++VA+  + GYNQEDS++MN
Sbjct: 754  HVLFYPQKPLVTTRSME-----------YLRFRELPAGINSVVAIACYTGYNQEDSVIMN 802

Query: 797  RASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGR------VDSLDD 850
             +++ERG FRS   RSYK        Q  +RS D    F K   +  +       D LD+
Sbjct: 803  ASAVERGFFRSVFYRSYKD-------QECKRSGDQEEQFEKPTKETCQGMRNAIYDKLDE 855

Query: 851  DGFPFIGANLQSGDIVIGKYAD---------------SGADHSIKLKHTERGMVQKVVLS 895
            DG    G  +   D++IGK                  +  D S  L+++E G+V +V+++
Sbjct: 856  DGIIAPGIRVSGDDVIIGKTITLPENDDELEGTTRRFTKRDASTFLRNSETGIVDQVMVT 915

Query: 896  SNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPH 955
             N +G  F  + +R VR P +GDKF+S HGQKG  G    QE+  FT +G+ PDI+INPH
Sbjct: 916  LNAEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMIFTCEGLTPDIIINPH 975

Query: 956  AFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFA-TPSVDAITEQLHRAGFSKWG 1014
            A PSR T G L+E   GK   +  KG        ATPF  T +V  I+  L   G+   G
Sbjct: 976  AIPSRMTIGHLIECLQGK--VSANKGEIGD----ATPFNDTVNVQKISNLLQEYGYQLRG 1029

Query: 1015 TERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGI 1074
             E +Y+G++G  + + IF+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG+
Sbjct: 1030 NEVMYNGQSGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGL 1089

Query: 1075 KFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGP 1132
            +FGEMERDC IAHGAA  L ERLF +SD Y++H+C  C    +AN+              
Sbjct: 1090 RFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNLCGLIAIANLRNNTFE-------- 1141

Query: 1133 YCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
             C+ C +   I +  +PY AKLL QEL +M I 
Sbjct: 1142 -CKGCKNKTQISQVRLPYAAKLLFQELMAMNIA 1173


>gi|227826395|gb|ACP41922.1| RNA polymerase IV, partial [Heliosperma tommasinii]
          Length = 380

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 300/386 (77%), Positives = 339/386 (87%), Gaps = 8/386 (2%)

Query: 624  ENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHC 683
            EN+ KIK L+G  ++FQ LLD GI+EL+G EEEEDC TAW IKYL    + K   K+THC
Sbjct: 1    ENLRKIKLLKGDEFSFQTLLDKGILELIGVEEEEDCRTAWEIKYLFTGEKGKGLEKYTHC 60

Query: 684  ELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQ 743
            ELD+SFLLG+SCGIIPFANHDHARRVLYQS+KHS QAIG+ TTNP+IR+DTLSHQ++YPQ
Sbjct: 61   ELDLSFLLGVSCGIIPFANHDHARRVLYQSEKHSGQAIGYATTNPNIRIDTLSHQMYYPQ 120

Query: 744  RPLFRTMISDCLGKPGY--GHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLE 801
            RPLFR++I+D LGK G+  G N ILP+ E +NGQNAI+AVNVHLGYNQEDS+VMNRASLE
Sbjct: 121  RPLFRSVIADSLGKAGHPLGRNQILPKAEFFNGQNAILAVNVHLGYNQEDSIVMNRASLE 180

Query: 802  RGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQ 861
            RGMFR+EHIRSYKAEVDNK+   KRR  DD V+FGKIQSK+GRVDSLDDDGFP IGANLQ
Sbjct: 181  RGMFRTEHIRSYKAEVDNKDSLEKRRKFDDAVSFGKIQSKLGRVDSLDDDGFPHIGANLQ 240

Query: 862  SGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFS 921
            SGDI+IG+ ++SG DHSIKLKHTE+GMVQKV+LS+NDDGKNF+VVSLRQVRSPCLGDKFS
Sbjct: 241  SGDIIIGRSSESGTDHSIKLKHTEKGMVQKVLLSANDDGKNFAVVSLRQVRSPCLGDKFS 300

Query: 922  SMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKG 981
            SMHGQKGVLGFLESQENFPFT QGIVPDIVINPHAFPSRQTP QLLEAALGKGIA     
Sbjct: 301  SMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPAQLLEAALGKGIA----- 355

Query: 982  ICSGLKRYATPFATPSVDAITEQLHR 1007
             C G  RYATPF+TPSV++ITEQLHR
Sbjct: 356  -CGGTLRYATPFSTPSVESITEQLHR 380


>gi|340382420|ref|XP_003389717.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Amphimedon
            queenslandica]
          Length = 1175

 Score =  627 bits (1618), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 425/1238 (34%), Positives = 627/1238 (50%), Gaps = 134/1238 (10%)

Query: 1    MDSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFD 60
            MD  D G        ++  +  +  C     S+F+E GLV  Q++S++EFI+  +Q+  +
Sbjct: 1    MDETDGGAYYDDEDDEISPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE 60

Query: 61   SFG--ETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQN 118
                 E   E  YD S   +   +Y S++F Q+ L KP+ +  +G   + + P  ARL+N
Sbjct: 61   DTPPLELQAEAQYDDS---DTPPKY-SLKFEQIYLSKPTHWEKDGKAVY-LMPNEARLRN 115

Query: 119  MTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLC 178
            +TYS+ + V V+  +                 Y  ++   D      IG+IP+M++S  C
Sbjct: 116  LTYSAPLYVDVKKTII----------------YEDEDSKEDPHPKTFIGKIPIMLRSTYC 159

Query: 179  WMKGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE- 231
             +  +      E  +C  D GGYFII G+EKV +AQE++    + V +      A+ +E 
Sbjct: 160  LLSQLTDRDLNELNECPLDPGGYFIINGSEKVLIAQEKMATNTVHVFSKKESKYAHTAEI 219

Query: 232  ------NKRNRLIVRLVDMSK----FEDIKGGEKVLSVY-FLSTEIPIWILFFALGVSSD 280
                  + R    + +  +S+     +    G+K+++   ++  EIPI I+F ALG  SD
Sbjct: 220  RSYIENSSRPVSTLWVSQLSRGGTGVKKSAIGQKIVATLPYIKQEIPIMIVFRALGFVSD 279

Query: 281  KEIVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDK 326
            ++I+  I +   D  ++ +L  S+ +A      N    F   R A         +KY   
Sbjct: 280  RDILEHIIYDFTDIEMMEMLKPSLDEAFVIQEQNVALNFIGVRGAKPGVTREKRIKYAKD 339

Query: 327  LIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRN 386
            +++    P    +  C             +KA FLGYMV  LLQA  GRR+ D+RD + N
Sbjct: 340  ILQKELLPHVGVSSFC-----------ETRKAYFLGYMVHRLLQAALGRRELDDRDHYGN 388

Query: 387  KRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFS 446
            KRL+LAG LL    +    +  K +    Q+ +   R    +E  +    +T+GL  + +
Sbjct: 389  KRLDLAGPLLAFLFRGLFRNLTKEVRLYAQKFIDKGRDFN-LELAIKTKTITDGLRYSLA 447

Query: 447  TGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKI 506
            TG W    K  +  +G+   L R     TL  LRR    +   GK+   R  H +HWG I
Sbjct: 448  TGNWGDQKKAHQTRAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLARPRQLHNTHWGMI 507

Query: 507  CFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFV 565
            C   TP+G   GLVKNL + G +S  S   PI E L    ME L +     +    K+FV
Sbjct: 508  CPAETPEGHAVGLVKNLALMGYISVGSQPAPILEFLEEWSMENLEEITPSVIANSTKIFV 567

Query: 566  DGDWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVE 624
            +G+W+G+ ++    ++ LRR RR+ ++  ++V + RD  + E+RIF DAGRI RPLL+VE
Sbjct: 568  NGNWVGIHREPEHLMTTLRRLRRQMDIIVSEVSMVRDIREREIRIFTDAGRICRPLLIVE 627

Query: 625  N---------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDK 675
            N         +  +K  E  N ++Q L+  G++E +   EEE    A     L  +    
Sbjct: 628  NQKLLLKKHHIQMLKEREYNNASWQDLVAGGVVEYIDCLEEETVMIAMTPDDLSTEGGAS 687

Query: 676  KPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTL 735
                +THCE+  + +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL
Sbjct: 688  YCSTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAM-GKQAMGVYITNYHVRMDTL 746

Query: 736  SHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVM 795
            +H L+YPQ+PL  T   +            L   EL  G NAIVA+  + GYNQEDS++M
Sbjct: 747  AHVLYYPQKPLVTTRSME-----------YLRFRELPAGINAIVAIASYTGYNQEDSVIM 795

Query: 796  NRASLERGMFRSEHIRSYKAE-----VDNKEMQVK--RRSSDDMVNFGKIQSKIGRVDSL 848
            N ++++RG+FRS   RSYK E      D +E+  K  R +   M N           D L
Sbjct: 796  NASAIDRGLFRSVFYRSYKDEESKRGFDQEEVFEKPTRDTCAGMRN--------AAYDKL 847

Query: 849  DDDGFPFIGANLQSGDIVIGKYAD--------SGA-------DHSIKLKHTERGMVQKVV 893
            D+DG    G  +   D +IGK            GA       D S  L+ +E G++ +V+
Sbjct: 848  DEDGIIAPGLRVSGNDAIIGKTISLPENDDELEGAPKRYQKRDASTFLRASETGIIDQVM 907

Query: 894  LSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVIN 953
            LS N DG  F  + +R VR P +GDKF+S HGQKG  G    QE+ PFT +G+ PD++IN
Sbjct: 908  LSLNQDGYKFCKIRVRSVRVPQIGDKFASRHGQKGTCGITYRQEDMPFTCEGLSPDVIIN 967

Query: 954  PHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSK 1012
            PHA PSR T G L+E   GK   +  KG        ATPF    +V  I+E L+   +  
Sbjct: 968  PHAIPSRMTIGHLIECLQGK--VSANKGEIGD----ATPFNDAVNVQKISELLNEYNYHL 1021

Query: 1013 WGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFG 1072
             G E LY+G TG  + + +F+GPT+YQRL HM +DK+  R  GPV  LTRQP+  R R G
Sbjct: 1022 RGNEVLYNGHTGRKLNTQVFLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPMEGRSRDG 1081

Query: 1073 GIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGP 1132
            G++FGEMERDC IAHGAA  LHERL+T+SD+Y++H+C  C  +A           +    
Sbjct: 1082 GLRFGEMERDCQIAHGAAQFLHERLYTVSDAYKIHLCNLCGLIAI-------ANLQTNSF 1134

Query: 1133 YCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
             CR C +   I +  +PY  KLL QEL SM I  +  T
Sbjct: 1135 ECRGCKNKTQISQIEIPYACKLLFQELMSMSIAPRIMT 1172


>gi|330796313|ref|XP_003286212.1| RNA polymerase II core subunit [Dictyostelium purpureum]
 gi|325083799|gb|EGC37242.1| RNA polymerase II core subunit [Dictyostelium purpureum]
          Length = 1169

 Score =  627 bits (1617), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 410/1187 (34%), Positives = 623/1187 (52%), Gaps = 105/1187 (8%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP--GYDPSK-KGEGEWRYASMRF 88
            ++F E GLV  Q++S++EFI+N +Q+  D      + P   + P + + +      S++F
Sbjct: 29   AYFQEKGLVRQQLDSFDEFIQNTMQEIIDESPPITLRPEAQHHPGQTQIQNTVSTFSVKF 88

Query: 89   GQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGR 148
            GQ+ L KP+  A   G    + P  AR++N+TYS+ + V +   V T           G 
Sbjct: 89   GQIYLSKPT--AEIDGVSQQVTPNQARIRNLTYSAPLFVDITKTVMT-----------GP 135

Query: 149  EQYIQKEVLSDETTN-IIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGA 201
            +  I+++  +DE    + IG++P+M++S  C +           G+C FD GGYF+I G+
Sbjct: 136  KGKIEEQRRNDELLKRVFIGKVPIMLRSQYCMLYEATDRDLTTMGECPFDQGGYFVINGS 195

Query: 202  EKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKV 256
            EKV +AQE++    ++V      +   +    +S  +        + +    +   G   
Sbjct: 196  EKVLIAQEKMNNNHVYVFKKSPPSKYSYVAEIRSCQETGSRPTSTMYLKMLHNTNKGPVG 255

Query: 257  L--SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEF 314
            +  ++ ++  ++P+ I+F ALG  +DK+I+  I +   D  +++++  S+ ++       
Sbjct: 256  IKATIPYIKQDVPVIIVFRALGFVADKDILEHICYDFNDAQMMDLMRPSLEESF----VI 311

Query: 315  RKGRNALKYVDKLIKGTTFPPGES----TEECMNTYLFPSLHGTK----QKARFLGYMVK 366
            +    AL Y+ K  +G+T    E       E +   + P +   +    +KA + GY+V 
Sbjct: 312  QSQEVALDYLGK--RGSTIGTREQRIKFAREVLQKEMLPHVSVAEFYETKKAFYFGYIVH 369

Query: 367  CLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR 426
             LL A   RR  D+RD F NKRL+LAG LL    +       K +   LQR +  D+   
Sbjct: 370  RLLLASLERRPLDDRDHFANKRLDLAGPLLGTLFRQLFKKLTKDVRLYLQRCIDKDKEFI 429

Query: 427  PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
            P    + +  +T+GL  + +TG W    K     SG+   L R     TL  LRR    +
Sbjct: 430  P-SSAVKSKTITSGLKYSLATGNWGSS-KSGGTKSGVAQVLNRLTFASTLSHLRRLNTPI 487

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSG 545
               GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  S  +PI E L    
Sbjct: 488  GREGKLAKPRQLHNTHWGIVCPSETPEGQACGLVKNLSMMSYISVGSASQPILEFLEEWT 547

Query: 546  MEKLADDASYS-LGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQ 604
             E L + +  S +    K+FV+G W+G+       +  LR  RR  ++  +V + RD  +
Sbjct: 548  TENLEEISDLSSIFTATKIFVNGMWVGIHHQPDKLLGTLRLLRRCGDVSVEVSVVRDIRE 607

Query: 605  SEVRIFMDAGRILRPLLVVE-NMGKIKSLE-------GKNYTFQALLDHGIIELVGTEEE 656
             E+R++ D GR  RPL VV+ N  ++K             Y +Q LL+ GIIE +  EEE
Sbjct: 608  KELRLYTDPGRCCRPLFVVQDNKLQVKKHHISKLINNSDEYKWQDLLNEGIIEYIDAEEE 667

Query: 657  EDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKH 716
            E    A     L+    ++    +THCE+  S +LG+ C IIPF +H+ + R  YQ+   
Sbjct: 668  ETVLIAMTPDDLVPLANEQIVHTYTHCEIHPSMILGVCCSIIPFPDHNQSPRNTYQA-AM 726

Query: 717  SSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQN 776
              QA+G   TN  +R+DT++H LFYPQ+PL  T   +      Y H   LP      GQN
Sbjct: 727  GKQAMGVYITNYQLRMDTMAHVLFYPQKPLVTTRSME------YLHFRELP-----AGQN 775

Query: 777  AIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNK----EMQVKRRSSDDM 832
            A VA+  + GYNQEDS+++N+++++RG+FRS   R+YK E   +    E Q ++   D  
Sbjct: 776  ACVAIACYSGYNQEDSVILNQSAIDRGLFRSMFYRAYKDEQKKQTSLMEEQFEKPDRDTC 835

Query: 833  VNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA-------DSGA--------DH 877
                    + G  + +D+DG    G  +   DI+IGK         D G         D 
Sbjct: 836  AGM-----RHGSYEKIDEDGLVAPGVRVAGDDIIIGKTTPLPPQEDDLGPKTRRHTKRDS 890

Query: 878  SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQE 937
            S  L+ +E G+V +V+L+++ +G  F  V +R +R P +GDKFSS HGQKG  G    QE
Sbjct: 891  STALRSSENGIVDQVILTTSGEGFKFCKVRVRSMRVPQIGDKFSSRHGQKGTCGMAYRQE 950

Query: 938  NFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPS 997
            + P+T++GIVPDIV+NPHA PSR T GQL+E  LGK  A+ G       +  ATPF   +
Sbjct: 951  DLPWTVEGIVPDIVVNPHAIPSRMTIGQLIECLLGKVSASTGD------EGDATPFTDVT 1004

Query: 998  VDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPV 1057
            V+AI++ LH+ G+   G E +Y+G TG  + + IFIGPT+YQRL HM +DK+  R+ GPV
Sbjct: 1005 VEAISQALHKVGYQMTGHEVMYNGHTGRRMDAQIFIGPTYYQRLKHMVDDKIHSRSRGPV 1064

Query: 1058 HPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVAN 1117
              LTRQPV  R R GG++FGEMERDC+I+HG+AA L ERLF  SD Y++H+C  C  +A 
Sbjct: 1065 QILTRQPVEGRSRDGGLRFGEMERDCMISHGSAAFLRERLFDQSDHYRVHVCDICGLIAI 1124

Query: 1118 VIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
                      K     CR C +   I +  +PY AKLL QEL SM I
Sbjct: 1125 -------ANLKKNSFECRRCKNKTQISQVRMPYAAKLLFQELMSMSI 1164


>gi|324120668|dbj|BAJ78725.1| RNA polymerase II second largest subunit [Stichotrema asahinai]
          Length = 1173

 Score =  627 bits (1617), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 418/1217 (34%), Positives = 631/1217 (51%), Gaps = 134/1217 (11%)

Query: 17   LGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPSK 75
            +  E  +  C     ++F+E GLV  Q++SY+EFI+  +Q+   DS    IV      + 
Sbjct: 18   INSEVWQEACWIVINAYFDEKGLVRQQLDSYDEFIQMSVQRVVEDSPVIEIVAEAQHLAG 77

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT 135
            + E   RY  ++F Q+ L KP+ +  +G     + P  ARL+N+TYS+ + V +      
Sbjct: 78   EIENPPRYL-LKFEQIYLSKPTHWEKDGAPS-PLVPNEARLRNLTYSAPLYVDIS----- 130

Query: 136  QKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCD 189
             K +  D           ++ +    T   IG+IP+M++S  C + G+      E  +C 
Sbjct: 131  -KTIIRDG----------EDPIYKPHTKTFIGKIPIMLRSTYCLLNGMTDRDLTELNECP 179

Query: 190  FDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR-------------NR 236
            FD G YFII G+EKV +AQE++    ++V        AYK+E +                
Sbjct: 180  FDPGAYFIINGSEKVLIAQEKMATNTVYVFAMKDGKFAYKTEIRSCLEHSSRPTSTLWVN 239

Query: 237  LIVRLVDMSKFEDIKGGEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCS 295
            ++ R   + K   +  G++++++  ++  EIPI ++F ALG  +D++I+  I +  ED  
Sbjct: 240  MLARGGQVGKRNSV--GQRIIAILPYIKQEIPIMVVFRALGFVADRDILEHIIYDFEDPE 297

Query: 296  ILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEE 341
            ++ ++  S+ +A      N    F   R A         +KY  ++++    P    ++ 
Sbjct: 298  MMEMVKPSLDEAFVIQEQNIALNFIGARGARPGVTKEKRIKYAKEILQKEMLPHVGVSDF 357

Query: 342  CMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELK 401
            C             +KA FLGYMV  LL A  GRR+ D+RD + NKRL+L G LL     
Sbjct: 358  C-----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLGGPLL----- 401

Query: 402  VHIAHARKRMAKALQRD--LYGDRTVR-----PIEYYLDASILTNGLSRAFSTGAWSHPF 454
               +   + M K L ++  LY  + V       IE  +   I+++GL  + +TG W+   
Sbjct: 402  ---SFLFRGMFKNLIKEVRLYAQKFVDRGKDFNIELAVKTRIISDGLRYSLATGNWADQK 458

Query: 455  KRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDG 514
            K  +  +G+   L R     TL  LRR    +   GK+   R  H + WG IC   TP+G
Sbjct: 459  KAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEG 518

Query: 515  ENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVC 573
               GLVKNL +   +S  S   PI E L    ME L + A  S+    K+FV+G W+G+ 
Sbjct: 519  AAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSSIADSTKIFVNGCWVGIH 578

Query: 574  KDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK---- 628
            +D    +S LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+V++ G+    
Sbjct: 579  RDPELLMSTLRKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRICRPLLIVDSEGRLLMK 638

Query: 629  ---IKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCEL 685
               I  L+ ++Y +Q+L+  G++E + T EEE    A     L ++ +D     FTHCE+
Sbjct: 639  KKDIDLLKDRDYGWQSLVSSGVVEYIDTLEEETIMIAMTPNDLRQNRDDTYCANFTHCEI 698

Query: 686  DMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRP 745
              S +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +P
Sbjct: 699  HPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 757

Query: 746  LFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMF 805
            L  T   + L              EL  G N+IVA+  + GYNQEDS+++N +++ERG F
Sbjct: 758  LVTTRSMEYLR-----------FRELPAGINSIVAILCYTGYNQEDSIIINASAVERGFF 806

Query: 806  RSEHIRSYK-AEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGD 864
            RS   RSY+ AEV     Q ++    + +    ++  I   D LD+DG    G  +   D
Sbjct: 807  RSVFYRSYRDAEVRRLGDQDEQFEKPNRLTCQGMRHAI--YDKLDEDGIIAPGVRVSGDD 864

Query: 865  IVIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLR 909
            +VIGK                  +  D S  L+ +E G+V +V+L+ N +G  F  + +R
Sbjct: 865  VVIGKTITLMENEDELESVTKKYTKRDASTFLRRSETGVVDQVMLTLNAEGYKFCKIRVR 924

Query: 910  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEA 969
             VR P +GDKF+S HGQKG  G    QE+ PFT +GI PDI+INPHA PSR T G L+E 
Sbjct: 925  SVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTSEGITPDIIINPHAIPSRMTIGHLIEC 984

Query: 970  ALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVR 1028
              GK   +  KG        ATPF    +V  I+  L   G++  G E +Y+G TG  + 
Sbjct: 985  LQGK--VSANKGEIGD----ATPFNDAVNVQKISHLLQEYGYNLRGNEIMYNGYTGRKIN 1038

Query: 1029 SLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG 1088
            + IFIGPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC I+HG
Sbjct: 1039 AQIFIGPTYYQRLKHMVDDKIHSRARGPVQILVRQPLEGRARDGGLRFGEMERDCQISHG 1098

Query: 1089 AAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANV 1148
            AA  L ERLFT+SD Y++H+C  C         +V    +     C+ C +   I + ++
Sbjct: 1099 AAQFLRERLFTVSDPYRIHVCNLCG-------LIVIANLRNNTFECKSCKNKTQISQVHL 1151

Query: 1149 PYGAKLLCQELFSMGIT 1165
            PY +KLL QEL +M I+
Sbjct: 1152 PYASKLLMQELMAMLIS 1168


>gi|324120628|dbj|BAJ78705.1| RNA polymerase II second largest subunit [Teleogryllus emma]
          Length = 1174

 Score =  627 bits (1617), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 418/1221 (34%), Positives = 627/1221 (51%), Gaps = 134/1221 (10%)

Query: 17   LGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPSK 75
            +  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S 
Sbjct: 16   ISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSG 75

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT 135
            + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +      
Sbjct: 76   EIENPPRYL-LKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLTYSAPLYVDI------ 127

Query: 136  QKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCD 189
                T    K G      +E +  +     IG+IP+M++S  C + G+      E  +C 
Sbjct: 128  ----TKTIIKDG------EEPIETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECP 177

Query: 190  FDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVRLV 242
             D GGYFII G+EKV +AQE++    ++V +      AYK+E       + R    + + 
Sbjct: 178  LDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKAEIRSCLEHSSRPTSTLWVN 237

Query: 243  DMSKF-EDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSIL 297
             M++  + IK    G+++++V  ++  EIPI I+F ALG  +D++I+  I +  +D  ++
Sbjct: 238  MMARGGQSIKKSAIGQRIIAVLPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMM 297

Query: 298  NILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEECM 343
             ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C 
Sbjct: 298  EMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFC- 356

Query: 344  NTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVH 403
                        +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL    +  
Sbjct: 357  ----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGL 406

Query: 404  IAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGI 463
              +  K +    Q+ +   +    +E  +   I+T+GL  + +TG W    K  +  +G+
Sbjct: 407  FKNLMKEVRMYAQKFIDRGKDFN-LELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 465

Query: 464  VANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNL 523
               L R     TL  LRR    +   GK+   R  H + WG IC   TP+G   GLVKNL
Sbjct: 466  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 525

Query: 524  GVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSE 582
             +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    ++ 
Sbjct: 526  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 585

Query: 583  LRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKSL 632
            LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VEN         +  +K  
Sbjct: 586  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGNLLLKKRHIDMLKER 645

Query: 633  EGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLG 692
            E  N+ +Q L+  G++E + T EEE    A     L ++ E    + +THCE+  + +LG
Sbjct: 646  EYNNFGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQEKEYAYCMTYTHCEIHPAMILG 705

Query: 693  LSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMIS 752
            +   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T   
Sbjct: 706  VCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSM 764

Query: 753  DCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRS 812
            +            L   EL  G N+IVA+  + GYNQEDS++MN +++ERG FRS   RS
Sbjct: 765  E-----------YLRFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRS 813

Query: 813  YK----AEVDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDI 865
            YK      + ++E Q +   R++   M N           D LDDDG    G  +   D+
Sbjct: 814  YKDAESKRIGDQEEQFEKPTRQTCQGMRN--------ALYDKLDDDGIISPGIRVSGDDV 865

Query: 866  VIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQ 910
            VIGK                  +  D S  L+++E G+V +V+L+ N +G  F  + +R 
Sbjct: 866  VIGKTITLPDNEDELEGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS 925

Query: 911  VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA 970
            VR P +GDKF+S HGQKG  G    QE+ PFT +G+ PDI+INPHA PSR T G L+E  
Sbjct: 926  VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECL 985

Query: 971  LGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRS 1029
             GK   +  KG        ATPF    +V  I+  L   G+   G E +Y+G TG  + +
Sbjct: 986  QGK--VSSNKGEIGD----ATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINA 1039

Query: 1030 LIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA 1089
             IF+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC IAHGA
Sbjct: 1040 QIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGA 1099

Query: 1090 AANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKAN 1147
            A  L ERLF +SD Y++H+C  C    +AN+               C+ C +   I +  
Sbjct: 1100 AQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---------CKGCKNKTQISQVR 1150

Query: 1148 VPYGAKLLCQELFSMGITLKF 1168
            +PY AKLL QEL +M I  + 
Sbjct: 1151 LPYAAKLLFQELMAMNIAPRL 1171


>gi|324120612|dbj|BAJ78697.1| RNA polymerase II second largest subunit [Ephemera japonica]
          Length = 1179

 Score =  627 bits (1617), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 424/1240 (34%), Positives = 631/1240 (50%), Gaps = 136/1240 (10%)

Query: 2    DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-D 60
            D D+    D     ++  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   D
Sbjct: 6    DMDEEPLDDQEDKEEISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVED 65

Query: 61   SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
            S    +       S + E   +Y  ++F Q+ L KP+ +  +G     M P  ARL+N+T
Sbjct: 66   SPQIDLQAEAQHTSGEIESPPKYF-LKFEQIYLSKPTHWEKDGAPT-PMMPNEARLRNLT 123

Query: 121  YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
            YS+ + V +       K V  D   T   Q+              IG+IP+M++S  C +
Sbjct: 124  YSAPLYVDIT------KLVVKDGENTVETQH----------QKTFIGKIPIMLRSTYCLL 167

Query: 181  KGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR 234
             G+      E  +C  D GGYFII G+EKV +AQE++    ++V        AYK+E + 
Sbjct: 168  SGLSDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAMKDGKFAYKAEIRS 227

Query: 235  ---------NRLIVRLVDMSKFEDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDK 281
                     + L V ++  S  + IK    G++++++  ++  EIPI I+F ALG  +D+
Sbjct: 228  CQEHSSRPTSTLWVNMMARSG-QSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADR 286

Query: 282  EIVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKL 327
            +I+  I +  +D  ++ ++  S+ +A      N    F   R A         +KY  ++
Sbjct: 287  DILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKEKRIKYAREI 346

Query: 328  IKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNK 387
            ++    P    ++ C             +KA FLGYMV  LL A   RR+ D+RD + NK
Sbjct: 347  LQKEMLPHVGVSDFC-----------ETKKAYFLGYMVHRLLLAALSRRELDDRDHYGNK 395

Query: 388  RLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFST 447
            RL+LAG LL    +    +  K +    Q+ +   +    +E  +   I+T+GL  + +T
Sbjct: 396  RLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFN-LELAIKTKIITDGLRYSLAT 454

Query: 448  GAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKIC 507
            G W    K  +  +G+   L R     TL  LRR    +   GK+   R  H + WG IC
Sbjct: 455  GNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMIC 514

Query: 508  FLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVD 566
               TP+G   GLVKNL +   +S  S   PI E L    ME L + A  ++    K+FV+
Sbjct: 515  PAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAILDATKIFVN 574

Query: 567  GDWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN 625
            G W+G+ +D    +S LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VEN
Sbjct: 575  GCWVGIHRDPEQLMSTLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVEN 634

Query: 626  ---------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKK 676
                     +  +K  +  NY +Q L+  G++E + T EEE    A     L  + E   
Sbjct: 635  GSLLLKKVHIDMLKDRDYNNYGWQFLVSSGVVEYIDTLEEETVMIAMSPDDLNHEKEYAY 694

Query: 677  PIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLS 736
               +THCE+  + +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+
Sbjct: 695  CTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLA 753

Query: 737  HQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMN 796
            H L+YPQ+PL  T   + L              EL  G N++VA+  + GYNQEDS++MN
Sbjct: 754  HVLYYPQKPLVTTRSMEYLR-----------FRELPAGINSVVAIACYTGYNQEDSVIMN 802

Query: 797  RASLERGMFRSEHIRSYKAE----VDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLD 849
             +++ERG FRS   RSYK +    + ++E Q +   R +   M N           D LD
Sbjct: 803  ASAVERGFFRSIFYRSYKDQESKKIGDQEEQFEKPNRATCQGMRN--------AIYDKLD 854

Query: 850  DDGFPFIGANLQSGDIVIGKYAD--------SGA-------DHSIKLKHTERGMVQKVVL 894
            DDG    G  +   D++IGK            G+       D S  L+++E G+V +V++
Sbjct: 855  DDGIIAPGVRVSGDDVIIGKTITLPENDDELEGSTKKYVKRDASTFLRNSETGIVDQVMI 914

Query: 895  SSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINP 954
            + N +G  FS + +R VR P +GDKF+S HGQKG  G    QE+ PFT +GI PDI+INP
Sbjct: 915  TLNSEGYKFSKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINP 974

Query: 955  HAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKW 1013
            HA PSR T G L+E   GK   +  KG        ATPF    +V  I+  L   G+   
Sbjct: 975  HAIPSRMTIGHLIECLQGK--VSANKGEIGD----ATPFNDAVNVQKISSLLQEYGYHLR 1028

Query: 1014 GTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGG 1073
            G E +Y+G TG  + + IF+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG
Sbjct: 1029 GNEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGG 1088

Query: 1074 IKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRG 1131
            ++FGEMERDC IAHGAA  L ERLF +SD Y++H+C  C    +AN+             
Sbjct: 1089 LRFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE------- 1141

Query: 1132 PYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
              C+ C +   I +  +PY AKLL QEL SM I  +   E
Sbjct: 1142 --CKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMVE 1179


>gi|324120600|dbj|BAJ78691.1| RNA polymerase II second largest subunit [Petrobiellus takunagae]
          Length = 1151

 Score =  627 bits (1616), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 418/1219 (34%), Positives = 625/1219 (51%), Gaps = 148/1219 (12%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPSKKGEGEWRYA 84
            C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S + E   RY 
Sbjct: 1    CWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIENPPRYL 60

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKF 144
             ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +       K V  D  
Sbjct: 61   -LKFEQIYLSKPTHWEKDGAPT-PMMPNEARLRNLTYSAPLYVDIT------KTVVKDG- 111

Query: 145  KTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFII 198
                     ++ +  +     IG+IP+M++S  C + G+      E  +C  D GGYFII
Sbjct: 112  ---------EDPIETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFII 162

Query: 199  KGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR---------NRLIVRLVDM--SKF 247
             G+EKV +AQE++    ++V +      AYKSE +          + L V ++       
Sbjct: 163  NGSEKVLIAQEKMATNTVYVFSMKDGKYAYKSEIRSCLEHSSRPTSTLWVNMLARGGQSV 222

Query: 248  EDIKGGEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHD 306
            +    G+K++++  ++  EIPI I+F ALG  +D++I+  I +  +D  ++ ++  S+ +
Sbjct: 223  KKSSVGQKIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDE 282

Query: 307  A-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEECMNTYLFPSLH 352
            A      N    F  GR A         +KY  ++++    P    ++ C          
Sbjct: 283  AFVIQEQNVALNFIGGRGAKPGVTREKRIKYAREILQKEMLPHVGVSDFC---------- 332

Query: 353  GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMA 412
               +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL        A   + M 
Sbjct: 333  -ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLL--------AFLFRGMF 383

Query: 413  KALQRD--LYGDRTVR-----PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVA 465
            K L ++  +Y  + +       +E  +   I+T+GL  + +TG W    K  +  +G+  
Sbjct: 384  KNLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQ 443

Query: 466  NLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV 525
             L R     TL  LRR    +   GK+   R  H + WG IC   TP+G   GLVKNL +
Sbjct: 444  VLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLAL 503

Query: 526  TGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELR 584
               +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    +S LR
Sbjct: 504  MAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMSTLR 563

Query: 585  RKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKSLEG 634
            + RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VEN         +  +K  E 
Sbjct: 564  KLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGRLLLKKRHVDMLKEREY 623

Query: 635  KNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLS 694
             NY +Q L+    +E + T EEE    A  +  L +D E      +THCE+  + +LG+ 
Sbjct: 624  NNYGWQDLVASSAVEYIDTLEEETVMIAMSLDDLRQDKEYAYCTTYTHCEIHPAMILGVC 683

Query: 695  CGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDC 754
              IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YPQ+PL  T   + 
Sbjct: 684  ASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSME- 741

Query: 755  LGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYK 814
                       L   EL  G N++VA+  + GYNQEDS++MN +++ERG FRS  +R+YK
Sbjct: 742  ----------YLRFRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFRSVFMRAYK 791

Query: 815  ----AEVDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVI 867
                  V ++E Q +   R++   M N           D LDDDG    G  +   D++I
Sbjct: 792  DSESKRVGDQEEQFEKPTRQTCQGMRN--------AIYDKLDDDGIIAPGIRVSGDDVII 843

Query: 868  GKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVR 912
            GK                  +  D S  L+++E G+V +V+L+ N +G  F  + +R VR
Sbjct: 844  GKTITLPENDDELEGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 903

Query: 913  SPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALG 972
             P +GDKF+S HGQKG  G    QE+ PFT +G+ PDI+INPHA PSR T G L+E   G
Sbjct: 904  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQG 963

Query: 973  KGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLI 1031
            K   +  KG        ATPF    +V  I+  L   G+   G E +++G +G  + + +
Sbjct: 964  K--VSSNKGEIGD----ATPFNDAVNVQKISALLQEYGYQLRGNEVMFNGHSGRKINAQV 1017

Query: 1032 FIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAA 1091
            F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC IAHGAA 
Sbjct: 1018 FLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQ 1077

Query: 1092 NLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVP 1149
             L ERLF +SD Y++H+C  C    +AN+               C+ C +   I +  +P
Sbjct: 1078 FLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---------CKGCKNKTQISQVRLP 1128

Query: 1150 YGAKLLCQELFSMGITLKF 1168
            Y AKLL QEL SM I  + 
Sbjct: 1129 YAAKLLFQELMSMNIAPRL 1147


>gi|324120598|dbj|BAJ78690.1| RNA polymerase II second largest subunit [Pedetontus unimaculatus]
          Length = 1176

 Score =  627 bits (1616), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 418/1229 (34%), Positives = 629/1229 (51%), Gaps = 148/1229 (12%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPS 74
            ++  +  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S
Sbjct: 16   EVSSDLWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTS 75

Query: 75   KKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVY 134
             + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +     
Sbjct: 76   GEIENPPRYL-LKFEQIYLSKPTHWEKDGAPT-PMMPNEARLRNLTYSAPLYVDIT---- 129

Query: 135  TQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDC 188
              K V  D           ++ +  +     IG+IP+M++S  C + G+      E  +C
Sbjct: 130  --KTVVKDG----------EDPIETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNEC 177

Query: 189  DFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR---------NRLIV 239
              D GGYFII G+EKV +AQE++    ++V +      AYKSE +          + L V
Sbjct: 178  PLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKSEIRSCLEHSSRPTSTLWV 237

Query: 240  RLVDM--SKFEDIKGGEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
             ++       +    G+K++++  ++  EIPI I+F ALG  +D++I+  I +  +D  +
Sbjct: 238  NMLARGGQSVKKSSVGQKIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 297

Query: 297  LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
            + ++  S+ +A      N    F  GR A         +KY  ++++    P    ++ C
Sbjct: 298  MEMVKPSLDEAFVIQEQNVALNFIGGRGAKPGVTKEKRIKYAREILQKEMLPHVGVSDFC 357

Query: 343  MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                         +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL      
Sbjct: 358  -----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLL------ 400

Query: 403  HIAHARKRMAKALQRD--LYGDRTVR-----PIEYYLDASILTNGLSRAFSTGAWSHPFK 455
              A   + M K L ++  +Y  + +       +E  +   I+T+GL  + +TG W    K
Sbjct: 401  --AFLFRGMFKNLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 458

Query: 456  RTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGE 515
              +  +G+   L R     TL  LRR    +   GK+   R  H + WG IC   TP+G 
Sbjct: 459  AHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 518

Query: 516  NCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCK 574
              GLVKNL +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +
Sbjct: 519  AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 578

Query: 575  DSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN-------- 625
            D    +S LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VEN        
Sbjct: 579  DPEQLMSTLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGRLLLKKR 638

Query: 626  -MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCE 684
             +  +K  E  NY +Q L+    +E + T EEE    A  +  L +D E      +THCE
Sbjct: 639  HVDMLKEREYNNYGWQDLVASSAVEYIDTLEEETVMIAMSLDDLRQDKEYAYCTTYTHCE 698

Query: 685  LDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQR 744
            +  + +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YPQ+
Sbjct: 699  IHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQK 757

Query: 745  PLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGM 804
            PL  T   +            L   EL  G N++VA+  + GYNQEDS++MN +++ERG 
Sbjct: 758  PLVTTRSME-----------YLRFRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGF 806

Query: 805  FRSEHIRSYK----AEVDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIG 857
            FRS  +R+YK      V ++E Q +   R++   M N           D LDDDG    G
Sbjct: 807  FRSVFMRAYKDSESKRVGDQEEQFEKPTRQTCQGMRN--------AIYDKLDDDGIIAPG 858

Query: 858  ANLQSGDIVIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKN 902
              +   D++IGK                  +  D S  L+++E G+V +V+L+ N +G  
Sbjct: 859  IRVSGDDVIIGKTITLPENDDELEGTTRRYTKRDASTFLRNSETGIVDQVMLTLNSEGYK 918

Query: 903  FSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQT 962
            F  + +R VR P +GDKF+S HGQKG  G    QE+ PFT +G+ PDI+INPHA PSR T
Sbjct: 919  FCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMT 978

Query: 963  PGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDG 1021
             G L+E   GK   +  KG        ATPF    +V  I+  L   G+   G E +++G
Sbjct: 979  IGHLIECLQGK--VSSNKGEIGD----ATPFNDAVNVQKISALLQEYGYQLRGNEVMFNG 1032

Query: 1022 RTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMER 1081
             +G  + + +F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMER
Sbjct: 1033 HSGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMER 1092

Query: 1082 DCLIAHGAAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDS 1139
            DC IAHGAA  L ERLF +SD Y++H+C  C    +AN+               C+ C +
Sbjct: 1093 DCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---------CKGCKN 1143

Query: 1140 GDDIVKANVPYGAKLLCQELFSMGITLKF 1168
               I +  +PY AKLL QEL SM I  + 
Sbjct: 1144 KTQISQVRLPYAAKLLFQELMSMNIAPRL 1172


>gi|212545975|ref|XP_002153141.1| DNA-dependent RNA polymerase II RPB140 [Talaromyces marneffei ATCC
            18224]
 gi|210064661|gb|EEA18756.1| DNA-dependent RNA polymerase II RPB140 [Talaromyces marneffei ATCC
            18224]
          Length = 1254

 Score =  627 bits (1616), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 419/1254 (33%), Positives = 635/1254 (50%), Gaps = 139/1254 (11%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGE--WRY 83
            C     S+F+  GLVS Q++S++EFI + +Q+  +  G+  ++    P++        R 
Sbjct: 25   CWTVISSYFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTIDQTITPNEDEIDPVVIRR 84

Query: 84   ASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT-QKRVTSD 142
              +++G + L +PSF   NG     + P  AR +N+TY+S + + VQ ++   ++R   D
Sbjct: 85   YEIKYGTIMLARPSFSEINGAATL-LLPMEARHRNLTYASPLYLNVQRRLTEGRERKAVD 143

Query: 143  KFKTGREQYIQKE-------------VLSDETTNIIIGRIPVMVKSDLCWMKGVEK---- 185
            +   G E   QK              V  +E     IGRIP+M+KS  C ++ + +    
Sbjct: 144  REGEGDENEEQKPGGTYLDWEEKPLVVSEEEAKGCYIGRIPIMLKSKYCLLRDLSEQSLY 203

Query: 186  --GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKRNRLI 238
               +C +D GGYFII G+EKV +AQE+     + V      +   +    +S  ++   I
Sbjct: 204  NWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYIAEIRSAVEKGSRI 263

Query: 239  VRLVDMSKF---EDIKGGEKVL---SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCE 292
            +  + +  F   +  KGG       S+ ++ T+IPI I+F ALGV SD++I+N I +   
Sbjct: 264  LSQLSLKLFAKGDSSKGGFGPTIRSSLPYIKTDIPIVIVFRALGVVSDEDILNHICYDRN 323

Query: 293  DCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES----TEECMNTYLF 348
            D  +L +L   I +     D       AL ++ K     T    +       E M     
Sbjct: 324  DTPMLEMLKPCIEEGFVIQDR----EVALDFISKRGSSQTSMSHDRRVRYAREIMQKEFL 379

Query: 349  PSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHI 404
            P +  ++    +KA FLGYMV  LLQ   GRR  D+RD F  KRL+LAG LL    +   
Sbjct: 380  PHISQSEGSETRKAFFLGYMVHKLLQCALGRRDVDDRDHFGKKRLDLAGPLLATLFRTLF 439

Query: 405  AHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIV 464
                + + + +QR +  +R V  +   L  + LT GL  A +TG W    K     +G+ 
Sbjct: 440  TRVTRDLTRYVQRCVETNREVV-LNVGLKPATLTGGLKYALATGNWGEQKKAMSSKAGVS 498

Query: 465  ANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLG 524
              L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL 
Sbjct: 499  QVLSRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLA 558

Query: 525  VTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSEL 583
            +   ++  S  EPI + +    ME L +          KVFV+G W+GV +D    VS +
Sbjct: 559  LMCSITVGSPSEPIVDFMIQRNMEVLEEFEPLVTPHATKVFVNGVWVGVHRDPAHLVSTV 618

Query: 584  RRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------------IK 630
            +  RRR  +  +V + RD    E +IF DAGR+ RPL V++N  +             I+
Sbjct: 619  QSLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDPRSENCGSLVLNKDHIR 678

Query: 631  SLEG---------------KNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYL------- 668
             LE                + Y ++ L+  G+IE V  EEEE    A   + L       
Sbjct: 679  RLEADRELPPDLDPEERREQYYGWEGLVKSGVIEYVDAEEEETIMIAMSPEDLEISKQLQ 738

Query: 669  ---------------LKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQS 713
                           ++ +  ++   +THCE+  S +LG+   IIPF +H+ + R  YQS
Sbjct: 739  AGYTLPEDNNDPNKRVRSVLSQRAHIWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS 798

Query: 714  QKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYN 773
                 QA+G   TN   R++T+++ L+YPQ+PL  T   +            L   EL  
Sbjct: 799  -AMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSME-----------FLKFRELPA 846

Query: 774  GQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMV 833
            GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y        +Q   +    M 
Sbjct: 847  GQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTEAERKLGLQTIEKFEKPMR 906

Query: 834  NFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD---------------SGADHS 878
            +   +  + G  D ++DDG    G  +   DI+IGK A                +  D S
Sbjct: 907  S-DTLGMRKGTYDKIEDDGLVAPGVRVTGEDIIIGKTAPLAPESEELGQRTKAHTKVDVS 965

Query: 879  IKLKHTERGMVQKVVLSS-NDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQE 937
              L+ TE G+V +V+L++ ND       V +R  + P +GDKF+S HGQKG +G     E
Sbjct: 966  TPLRATESGIVDQVLLTTGNDPDLRLVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRHE 1025

Query: 938  NFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPS 997
            + PFT +GIVPD++INPHA PSR T   L+E  L K +++L      G +  ATPF   +
Sbjct: 1026 DMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSK-VSSL-----RGFEGDATPFTDVT 1079

Query: 998  VDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPV 1057
            VD+++  L   G+   G E +Y+G TG+ +++ +F+GPT+YQRL HM +DK+  R  GP 
Sbjct: 1080 VDSVSRLLREHGYQSRGFEVMYNGHTGKKLKAQVFLGPTYYQRLRHMVDDKIHARARGPT 1139

Query: 1058 HPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVAN 1117
              LTRQPV  R R GG++FGEMERDC+IAHGA+A L ERLF +SD +++HIC  C  +  
Sbjct: 1140 QILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDC-GLMT 1198

Query: 1118 VIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
             I ++  G  +     CR+C++   I + ++PY AKLL QEL +M I  +  T+
Sbjct: 1199 PIAKLKKGLFE-----CRLCNNKHRISQVHIPYAAKLLFQELAAMNIAARMFTD 1247


>gi|324120608|dbj|BAJ78695.1| RNA polymerase II second largest subunit [Epiophlebia superstes]
          Length = 1175

 Score =  627 bits (1616), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 417/1222 (34%), Positives = 628/1222 (51%), Gaps = 134/1222 (10%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPS 74
            ++  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S
Sbjct: 16   EISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTS 75

Query: 75   KKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVY 134
             + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +     
Sbjct: 76   GEIENPPRYL-LKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLTYSAPLYVDI----- 128

Query: 135  TQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDC 188
                 T    K G      +E +  +     IG+IP+M++S  C + G+      E  +C
Sbjct: 129  -----TKTVAKEG------EEPIETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNEC 177

Query: 189  DFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVRL 241
              D GGYFII G+EKV +AQE++    ++V +      A+K+E       + R    + +
Sbjct: 178  PLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKFAFKAEIRSCLEHSSRPTSTLWV 237

Query: 242  VDMSKF-EDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
              M++  + IK    G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  +
Sbjct: 238  NMMARCGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 297

Query: 297  LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
            + ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C
Sbjct: 298  MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKEKRVKYAREILQKEMLPHVGVSDFC 357

Query: 343  MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                         +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL    + 
Sbjct: 358  -----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 403  HIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISG 462
               +  K +    Q+ +   +    +E  +   I+T+GL  + +TG W    K  +  +G
Sbjct: 407  LFKNLMKEVRMYAQKFIDRGKDFN-LELAIKTKIITDGLRYSLATGNWGDQKKAHQARAG 465

Query: 463  IVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKN 522
            +   L R     TL  LRR    +   GK+   R  H + WG IC   TP+G   GLVKN
Sbjct: 466  VSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKN 525

Query: 523  LGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVS 581
            L +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    ++
Sbjct: 526  LALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMA 585

Query: 582  ELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKS 631
             LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VEN         +  +K 
Sbjct: 586  TLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGTLLLKKRHIEMLKE 645

Query: 632  LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLL 691
             E  NY +Q L+  G++E + T EEE    A   + L ++ E      +THCE+  + +L
Sbjct: 646  REYNNYGWQVLVASGVVEYIDTLEEETVMIAMSPEDLRQEKEYAYCSTYTHCEIHPAMIL 705

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T  
Sbjct: 706  GVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRS 764

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
             +            L   EL  G N++VA+  + GYNQEDS++MN +++ERG FRS   R
Sbjct: 765  ME-----------YLRFRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFRSVFYR 813

Query: 812  SYKAE----VDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGD 864
            SYK +    V ++E Q +   R +   M N           D LDDDG    G  +   D
Sbjct: 814  SYKDQESKRVGDQEEQFEKPTRATCQGMRN--------AIYDKLDDDGIIAPGVRVSGDD 865

Query: 865  IVIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLR 909
            +VIGK                  +  D S  L+++E G+V +V+++ N +G  F  + +R
Sbjct: 866  VVIGKTITLPENDDELEGTTKRFTKRDASTFLRNSETGIVDQVMITLNSEGYKFCKIRVR 925

Query: 910  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEA 969
             VR P +GDKF+S HGQKG  G    QE+ PFT +G+ PDI+INPHA PSR T G L+E 
Sbjct: 926  SVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIEC 985

Query: 970  ALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVR 1028
              GK   +  KG        ATPF    +V  I+  L   G+   G E +Y+G TG  + 
Sbjct: 986  LQGK--VSANKGEIGD----ATPFNDAVNVQKISSLLQEYGYQLRGNEVMYNGHTGRKIN 1039

Query: 1029 SLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG 1088
            + IF+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC IAHG
Sbjct: 1040 AQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHG 1099

Query: 1089 AAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKA 1146
            AA  L ERLF +SD Y++H+C  C    +AN+               C+ C +   I + 
Sbjct: 1100 AAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---------CKGCKNKTQISQV 1150

Query: 1147 NVPYGAKLLCQELFSMGITLKF 1168
             +PY AKLL QEL SM I  + 
Sbjct: 1151 RLPYAAKLLFQELMSMNIAPRL 1172


>gi|227826391|gb|ACP41920.1| RNA polymerase IV, partial [Heliosperma pusillum]
          Length = 380

 Score =  627 bits (1616), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 300/386 (77%), Positives = 338/386 (87%), Gaps = 8/386 (2%)

Query: 624  ENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHC 683
            EN+ KIK L+G  ++FQ LLD GI+EL+G EEEEDC TAW IKYL    + K   K+THC
Sbjct: 1    ENLRKIKLLKGDEFSFQTLLDKGILELIGVEEEEDCRTAWEIKYLFTGEKGKGLEKYTHC 60

Query: 684  ELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQ 743
            ELD+SFLLG+SCGIIPFANHDHARRVLYQS+KHS QAIG+ TTNP IR+DTLSHQ++YPQ
Sbjct: 61   ELDLSFLLGVSCGIIPFANHDHARRVLYQSEKHSGQAIGYATTNPXIRIDTLSHQMYYPQ 120

Query: 744  RPLFRTMISDCLGKPGY--GHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLE 801
            RPLFR++I+D LGK G+  G N ILP+ E +NGQNAI+AVNVHLGYNQEDS+VMNRASLE
Sbjct: 121  RPLFRSVIADSLGKAGHPLGRNQILPKAEFFNGQNAILAVNVHLGYNQEDSIVMNRASLE 180

Query: 802  RGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQ 861
            RGMFR+EHIRSYKAEVDNK+   KRR  DD V+FGKIQSK+GRVDSLDDDGFP IGANLQ
Sbjct: 181  RGMFRTEHIRSYKAEVDNKDSLEKRRKFDDAVSFGKIQSKLGRVDSLDDDGFPHIGANLQ 240

Query: 862  SGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFS 921
            SGDI+IG+ ++SG DHSIKLKHTE+GMVQKV+LS+NDDGKNF+VVSLRQVRSPCLGDKFS
Sbjct: 241  SGDIIIGRSSESGTDHSIKLKHTEKGMVQKVLLSANDDGKNFAVVSLRQVRSPCLGDKFS 300

Query: 922  SMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKG 981
            SMHGQKGVLGFLESQENFPFT QGIVPDIVINPHAFPSRQTP QLLEAALGKGIA     
Sbjct: 301  SMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPAQLLEAALGKGIA----- 355

Query: 982  ICSGLKRYATPFATPSVDAITEQLHR 1007
             C G  RYATPF+TPSV++ITEQLHR
Sbjct: 356  -CGGXLRYATPFSTPSVESITEQLHR 380


>gi|44889502|gb|AAS48373.1| RNA polymerase II [Cochliobolus heterostrophus]
          Length = 1208

 Score =  627 bits (1616), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 410/1214 (33%), Positives = 618/1214 (50%), Gaps = 166/1214 (13%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPG--YDPSKKGEG--EW 81
            C     SFF+  GLVS Q++SY+EF +N +Q      G  I+E    Y+P +      + 
Sbjct: 27   CWAVISSFFDTKGLVSQQLDSYDEFTRNTIQDIVKENGSVILEQNTPYNPDEDDNPIIKR 86

Query: 82   RYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTS 141
            RY  ++FG+V L +P+   G+G     ++P  ARL+N+TYS  M   ++ ++   +    
Sbjct: 87   RY-EIKFGRVYLARPTHTEGDGTTVQ-LYPHEARLRNLTYSGAMLADIENRIMVAREGRD 144

Query: 142  DK----------FKTGREQ--YIQKEVLSDETT--NIIIGRIPVMVKSDLCWMKGVEKGD 187
             +          +  G  Q  + ++++  D+ T   + IG++PVM++S+LC ++     D
Sbjct: 145  PEGDEDEDMEGGYTGGASQIRWEREDMPMDDGTAARVFIGKLPVMLRSELCHLRAQSDAD 204

Query: 188  ------CDFDHGGYFIIKGAEKVFVAQEQICLKRLWV----SNSMGWTVAYKSENKRNRL 237
                  C +D GGYF+I G+EKV +AQE+     + V       + W    +S  ++   
Sbjct: 205  LFALNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFRKKQGPIPWIAEIRSAVEKGTR 264

Query: 238  IVRLVDMSKFED--------IKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDF 289
            ++   ++   E+        I G     ++ ++  ++P+ I+F ALG+ SD+EI++ I +
Sbjct: 265  LISSFNIKWAENSLAGPGKRIPGPFAYATLPYIKADVPMAIVFRALGIVSDEEILSHIVY 324

Query: 290  TCEDCSILNILFASIHDADNKCDE-------FRKGRNA------LKYVDKLIKGTTFPPG 336
               D  +L +L  SI +     D         ++G N+      LK+   +++   F P 
Sbjct: 325  DRTDTQMLELLKPSIEEGSVVQDRETALDFIAKRGANSGTKDRRLKFARDIMQ-REFLPH 383

Query: 337  ESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL 396
             S +E  +T          +KA F GYM+  LLQ   GRR  D+RD F  KRL+LAG L+
Sbjct: 384  ISQKEGQDT----------RKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLI 433

Query: 397  ERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKR 456
                ++      K + K LQR +  ++    ++  + ASI+TNGL  + +TG W      
Sbjct: 434  ANLFRILFLKLTKDVYKYLQRCVENNQDFN-VQMAVKASIITNGLKYSLATGNWGDQKXA 492

Query: 457  TERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGEN 516
                +G+   L R     TL  LRRT   V   GK+   R  H SHWG +C   TP+G+ 
Sbjct: 493  ASAXAGVSQVLNRYTYASTLSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQA 552

Query: 517  CGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKD 575
            CGLVKNL +   VS  S   PI + +    M+ L +          KVFV+G W+GV  +
Sbjct: 553  CGLVKNLSLMCYVSVGSDASPIIDFMTQRNMQLLEEYDQNQNPDATKVFVNGVWVGVHSN 612

Query: 576  SLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------- 625
            +   V+ ++  RR   L  ++ + RD    E +IF DAGR++RPL VVEN          
Sbjct: 613  AQQLVTVVQELRRNGTLSYEMSLIRDIRDREFKIFTDAGRVMRPLFVVENDIRKPNRNHL 672

Query: 626  ------MGKIKS---------------LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWG 664
                    K+K+               +E   Y ++ L+  G++E +  EEEE     + 
Sbjct: 673  IFTKEISNKLKAEQQETSTRQGWSQEEVEQATYGWRGLIQDGVVEYLDAEEEETAMITFS 732

Query: 665  IKYL-------------------------LKDIEDKKPIKFTHCELDMSFLLGLSCGIIP 699
             + L                         LK   D +   +THCE+  + +LG+   IIP
Sbjct: 733  PEDLEEWREMKMGLPAAERSTEGKDRLRRLKPQPDPRIHAYTHCEIHPAMILGICASIIP 792

Query: 700  FANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPG 759
            F +H+ + R  YQS     QA+G   TN ++R++T+ + L+YPQ+PL  T   +      
Sbjct: 793  FPDHNQSPRNTYQS-AMGKQAMGVALTNFALRMETMMNVLYYPQKPLATTRSME------ 845

Query: 760  YGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDN 819
                  L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y      
Sbjct: 846  -----YLKFRELPAGQNAIVAIATYGGYNQEDSVIMNQSSIDRGLFRSLFYRAYTE---- 896

Query: 820  KEMQVKRRSSDDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADS 873
               Q KR   + +  F K      ++ K G  D LDDDG    G  +   DI+IGK A  
Sbjct: 897  ---QEKRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPI 953

Query: 874  GADH---------------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGD 918
             AD                S  L+ TE G+V +V+ ++N +G  F  V  R  + P +GD
Sbjct: 954  AADAQELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGD 1013

Query: 919  KFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAL 978
            KF+S HGQKG +G    QE+ PFT +G+ PD++INPHA PSR T   L+E  L K     
Sbjct: 1014 KFASRHGQKGTIGITYRQEDMPFTREGVTPDLIINPHAIPSRMTIAHLVECLLSK----- 1068

Query: 979  GKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFY 1038
              G  +G +  ATPF   +VD I++ L  AG+ K G E +Y+G TG+ +R+ IF+GPT+Y
Sbjct: 1069 -VGAITGQEGDATPFTDVTVDQISQLLEDAGYQKRGFEIMYNGHTGKKLRTQIFLGPTYY 1127

Query: 1039 QRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLF 1098
            QRL HM +DK+  R  GP+  LTRQPV  R R GG++FGEMERDC+IAHGAAA L ERLF
Sbjct: 1128 QRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLF 1187

Query: 1099 TLSDSYQMHICRKC 1112
            T+SD+Y +H+C  C
Sbjct: 1188 TVSDAYTVHVCDIC 1201


>gi|254581920|ref|XP_002496945.1| ZYRO0D11770p [Zygosaccharomyces rouxii]
 gi|238939837|emb|CAR28012.1| ZYRO0D11770p [Zygosaccharomyces rouxii]
          Length = 1224

 Score =  626 bits (1615), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 421/1239 (33%), Positives = 637/1239 (51%), Gaps = 154/1239 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +FF E GLVS Q++S+N+F+   LQ         I+E     + + +   R   + FG++
Sbjct: 36   AFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHTTESDNISRKYEISFGKI 95

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             + KP     +G   H ++P+ ARL+N+TYSS + V V+      KR        GRE  
Sbjct: 96   YVTKPMVNESDGV-THALYPQEARLRNLTYSSGLFVDVK------KRTHEAVDIPGRE-- 146

Query: 152  IQKEVLSDETTN------IIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIK 199
            ++ E++++E+ N      + IGR+P+M++S  C++    + D      C FD GGYFII 
Sbjct: 147  LKYEMIAEESENDSDSGKVFIGRLPIMLRSKNCYLSDATESDLYKLKECPFDMGGYFIIN 206

Query: 200  GAEKVFVAQEQ-----ICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGE 254
            G+EKV +AQE+     + + +    + +      +S  ++    +  + +  F       
Sbjct: 207  GSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLFAREGNSS 266

Query: 255  KVL--SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD 312
            + +  ++ ++  +IPI I+F ALG+  D EI+  I +   D  +L +L   + D     D
Sbjct: 267  RTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFVIQD 326

Query: 313  EFRKGRNALKYVDKLIKGTTFPPGES-----TEECMNTYLFP---SLHG-TKQKARFLGY 363
                   AL ++ +  +GT     +        + +     P    L G   +KA FLGY
Sbjct: 327  R----ETALDFIGR--RGTALGIKKEKRIQYARDILQKEFLPHITQLEGFESRKAFFLGY 380

Query: 364  MVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDL--YG 421
            M+  LL     RR  D+RD F  KRL+LAG LL        A   K + + L RD+  Y 
Sbjct: 381  MINRLLLCALDRRDQDDRDHFGKKRLDLAGPLL--------AQLFKTLFRKLTRDIFRYM 432

Query: 422  DRTVRP-----IEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTL 476
             RTV       ++  ++A  +T+GL  A +TG W    K     +G+   L R     TL
Sbjct: 433  QRTVEEAKDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTL 492

Query: 477  VDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-LE 535
              LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S      
Sbjct: 493  SHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPM 552

Query: 536  PIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQ 595
            PI   L   GME L D   +      +VFV+G W GV ++    +  LR  RR+ ++  +
Sbjct: 553  PIITFLSEWGMEPLEDYIPHQSPEATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPE 612

Query: 596  VEIKRDELQSEVRIFMDAGRILRPLLVVEN------------MGKIKSL----------- 632
            V + RD  + E++IF DAGR+ RPL +V++             G I  L           
Sbjct: 613  VSMVRDIREKELKIFTDAGRVYRPLFIVDDDETLNRKELRIRKGHISKLMATEYQDIEGG 672

Query: 633  --EGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIK----------- 679
              + + YT+ +LL+ G++E +  EEEE    +          ED +P++           
Sbjct: 673  FEDSEEYTWTSLLNDGLVEYIDAEEEETILISM-------QPEDLEPVQENTFNEDDDDL 725

Query: 680  ------------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTN 727
                        FTHCE+  S +LG++  IIPF +H+ + R  YQ+     QA+G   TN
Sbjct: 726  ARRIKATHHATTFTHCEVHPSMILGVAASIIPFPDHNQSPRNTYQA-AMGKQAMGVFLTN 784

Query: 728  PSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGY 787
             ++R+DT+++ L+YPQ+PL  T   +            L   EL  GQNAIVA+  + GY
Sbjct: 785  YNVRMDTMANILYYPQKPLGTTRAME-----------YLKFRELPAGQNAIVAIACYSGY 833

Query: 788  NQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDS 847
            NQEDS++MN++S++RG+FRS   RSY  +     M +   + +       ++ K G  D 
Sbjct: 834  NQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSIT-ETFEKPQRTNTLRMKHGTYDK 892

Query: 848  LDDDGFPFIGANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQKV 892
            LDDDG    G  +   DI+IGK                  S  D S  L+ TE G+V ++
Sbjct: 893  LDDDGLIAPGVRVSGEDIIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQI 952

Query: 893  VLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVI 952
            ++++N DG  F  V +R  + P +GDKF+S HGQKG +G    +E+ PFT +GIVPD++I
Sbjct: 953  LITTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYGREDMPFTAEGIVPDLII 1012

Query: 953  NPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSK 1012
            NPHA PSR T   L+E  L K +AAL     SG +  A+PF   +V+ I++ L   G+  
Sbjct: 1013 NPHAIPSRMTVAHLIECLLSK-VAAL-----SGNEGDASPFTDITVEGISKLLREHGYQS 1066

Query: 1013 WGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFG 1072
             G E +Y+G TG+ + S IF GPT+YQRL HM +DK+  R  GP+  LTRQPV  R R G
Sbjct: 1067 RGFEVMYNGHTGKKLMSQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDG 1126

Query: 1073 GIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGP 1132
            G++FGEMERDC+IAHGAAA L ERL   SD++++HIC  C  + +V+ ++     +    
Sbjct: 1127 GLRFGEMERDCMIAHGAAAFLKERLMEASDAFRVHICGIC-GLMSVVAKLNHNQFE---- 1181

Query: 1133 YCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
             CR CD+  DI + ++PY AKLL QEL +M IT +  T+
Sbjct: 1182 -CRGCDNKIDIYQIHIPYAAKLLFQELMAMNITPRLYTD 1219


>gi|449676040|ref|XP_002163509.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Hydra
            magnipapillata]
          Length = 1184

 Score =  626 bits (1615), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 419/1233 (33%), Positives = 640/1233 (51%), Gaps = 132/1233 (10%)

Query: 1    MDSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFD 60
            +D DD+ + +     ++ +E  +  C     S+F E GLV  Q++S++EFI+  +Q+  +
Sbjct: 5    IDEDDDHYDNTEEDDEISKELWQEACWTVISSYFEEKGLVRQQLDSFDEFIQMSVQRIVE 64

Query: 61   SFG--ETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQN 118
                 E   E  Y  ++  E   RY  ++F Q+ L KP+ +  +G  +  M P  ARL+N
Sbjct: 65   ESPPIELQAETQYTENEIEEPT-RY-QLKFEQIYLSKPTHWEKDGAPK-PMMPNEARLRN 121

Query: 119  MTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLC 178
            +TYS+ + V +       K +T    ++G+E        ++E + I IG+IP+M++S  C
Sbjct: 122  LTYSAPLYVDIS------KTIT----RSGQEPE------TEEHSKIYIGKIPIMLRSTYC 165

Query: 179  WMKGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAY---- 228
             + G+      E  +C  D GGYFII G+EKV +AQE++    ++V +      AY    
Sbjct: 166  VLSGLVDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFHKKDSKYAYSCEI 225

Query: 229  -----KSENKRNRLIVRLVDMSKFEDIK----GGEKVLSVYFLSTEIPIWILFFALGVSS 279
                 +S    + + + ++        K    G   + ++ ++  EIPI I+F ALG  S
Sbjct: 226  RSCLEQSSRPTSTMFISMLAKGGGGGAKKSAIGQRIIATIPYIRQEIPIMIVFRALGFVS 285

Query: 280  DKEIVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVD 325
            D++I+  I +   D  ++ ++  S+ +A      N    F   R A         +KY  
Sbjct: 286  DRDILEHIIYDFTDQEMMEMVKPSLDEAFVVQEQNVALNFIGTRGARPGVTKEKRIKYAR 345

Query: 326  KLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFR 385
            ++++    P   +++ C             +KA FLGYMV  +L A  GRR+ D+RD + 
Sbjct: 346  EILQKEMLPHVGTSDFC-----------ETKKAYFLGYMVHRILLAALGRRELDDRDHYG 394

Query: 386  NKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAF 445
            NKRL+LAG LL    +    +  K +    Q+ +   +  + IE  +    +T+GL  + 
Sbjct: 395  NKRLDLAGPLLAFLFRGLFKNLMKEVRLYAQKFIDKGKDFK-IELAIKTKTITDGLRYSL 453

Query: 446  STGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGK 505
            +TG W    K  +  +G+   L R     TL  LRR    +   GK+   R  H +HWG 
Sbjct: 454  ATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLARPRQLHNTHWGM 513

Query: 506  ICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVF 564
            IC   TP+G+  GLVKNL +   +S  S   PI E L    ME L + +  ++    K+F
Sbjct: 514  ICPAETPEGQAVGLVKNLALMAYISVGSQPSPILEFLEEWAMENLEEISPSAIKDATKIF 573

Query: 565  VDGDWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVV 623
            V+G W+G+ +D    +  LRR RR+ ++  ++V + RD    E+RI+ DAGR+ RPLL+V
Sbjct: 574  VNGCWVGIHRDPEQLILTLRRLRRQMDIIVSEVSMVRDIRDKEIRIYTDAGRVCRPLLIV 633

Query: 624  EN---------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIED 674
            EN         + ++K  E  N+ +Q L+  G++E +   EEE    A  ++ L ++ E 
Sbjct: 634  ENQKLLLKKSHVDQLKEREMNNFGWQDLVSKGVVEYIDVNEEETAMIAMSLEDL-EEREH 692

Query: 675  KKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDT 734
            K    +TH E+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DT
Sbjct: 693  KYSSTYTHSEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDT 751

Query: 735  LSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLV 794
            L+H L+YPQ+PL  T   D            L   EL  G N+IVA+  + GYNQEDS++
Sbjct: 752  LAHVLYYPQKPLVTTRSMD-----------FLKFRELPAGINSIVAIASYTGYNQEDSVL 800

Query: 795  MNRASLERGMFRSEHIRSYKAEVDNK----EMQVKRRSSDDMVNFGKIQSKIGRVDSLDD 850
            +N +++ RG++RS   RSY+ E   K    E + ++ + D+         +    D LDD
Sbjct: 801  LNASAINRGLYRSVFYRSYRDEESRKGLDQEEKFEKPNRDETTGM-----RAAIYDKLDD 855

Query: 851  DGFPFIGANLQSGDIVIGKY---------ADSGADH------SIKLKHTERGMVQKVVLS 895
            DG    G+ +   D++IGK           DS A H      S  L+ +E G+V +V+L+
Sbjct: 856  DGLIPPGSRVSGDDVIIGKTVTLPDDEDETDSQAKHFKKRDASTFLRASETGIVDQVMLT 915

Query: 896  SNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPH 955
             N++G  F  + +R VR P +GDKF+S HGQKG  G    QE+ PFT +GI PDI+INPH
Sbjct: 916  INEEGYKFCKIKVRSVRIPQIGDKFASRHGQKGTCGITYRQEDMPFTCEGISPDIIINPH 975

Query: 956  AFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWG 1014
            A PSR T G L+E   GK   +  KG        ATPF    +V  ++  L   G+   G
Sbjct: 976  AIPSRMTIGHLIECLQGK--VSANKGEIGD----ATPFNDAVNVQLVSSLLQEYGYHLRG 1029

Query: 1015 TERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGI 1074
             E LY+G TG  + + +F+GPT+YQRL HM +DK+  R  GPV  LTRQP+  R R GG+
Sbjct: 1030 NEVLYNGFTGRKLNAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPMEGRSRDGGL 1089

Query: 1075 KFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGP 1132
            +FGEMERDC IAHGAA  L+ERLF  SD+Y++H+C  C    +AN+              
Sbjct: 1090 RFGEMERDCQIAHGAAQFLNERLFEASDAYRVHVCNLCGLIAIANLRNNTFE-------- 1141

Query: 1133 YCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
             CR C +   + +  +PY  KLL QEL SM I 
Sbjct: 1142 -CRSCKNKTQVSQIRIPYACKLLFQELMSMSIA 1173


>gi|324120650|dbj|BAJ78716.1| RNA polymerase II second largest subunit [Anacanthocoris striicornis]
          Length = 1175

 Score =  626 bits (1615), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 418/1222 (34%), Positives = 627/1222 (51%), Gaps = 134/1222 (10%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPS 74
            ++  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S
Sbjct: 16   EISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTS 75

Query: 75   KKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVY 134
             + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +     
Sbjct: 76   GEVETPPRYL-LKFEQIYLSKPTHWEKDGSPS-PMMPNEARLRNLTYSAPLYVDI----- 128

Query: 135  TQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDC 188
                 T    + G      +E +  +     IG+IP+M++S  C + G+      E  +C
Sbjct: 129  -----TKTIIREG------EEPIESQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNEC 177

Query: 189  DFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVRL 241
              D GGYFII G+EKV +AQE++    ++V +      AYK+E       + R    + +
Sbjct: 178  PLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKFAYKAEIRSCLEHSSRPTSTLWV 237

Query: 242  VDMSKF-EDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
              M++  + IK    G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  +
Sbjct: 238  NMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 297

Query: 297  LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
            + ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C
Sbjct: 298  MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 357

Query: 343  MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                         +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL    + 
Sbjct: 358  -----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 403  HIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISG 462
               +  K +    Q+ +   +    +E  +   I+T+GL  + +TG W    K  +  +G
Sbjct: 407  LFKNLMKEVRMYAQKFIDRGKDFN-LELAIKTKIITDGLRYSLATGNWGDQKKAHQARAG 465

Query: 463  IVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKN 522
            +   L R     TL  LRR    +   GK+   R  H + WG IC   TP+G   GLVKN
Sbjct: 466  VSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKN 525

Query: 523  LGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVS 581
            L +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    + 
Sbjct: 526  LALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMG 585

Query: 582  ELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKS 631
             LR+ RR+ ++  ++V I RD    E+RI+ DAGRI RPLL+VEN         +  +K 
Sbjct: 586  TLRKLRRQMDIIVSEVSIIRDIRDREIRIYTDAGRICRPLLIVENGQLLLKKRHIENLKE 645

Query: 632  LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLL 691
             +  NY +Q L+  G++E + T EEE    A   + L +D E      +THCE+  + +L
Sbjct: 646  RDYNNYGWQVLVSSGVVEYIDTLEEETTMIAISPEDLRQDKEYAYCTTYTHCEIHPAMIL 705

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T  
Sbjct: 706  GVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRS 764

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
             +            L   EL  G N+IVA+  + GYNQEDS+++N +++ERG FRS   R
Sbjct: 765  ME-----------YLRFRELPAGINSIVAIACYTGYNQEDSVILNASAVERGFFRSVFFR 813

Query: 812  SYK----AEVDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGD 864
            SYK      V ++E Q +   R++   M N           D LDDDG    G  +   D
Sbjct: 814  SYKDAESKRVGDQEEQFEKPMRQTCQGMRN--------AIYDKLDDDGIIAPGLRVSGDD 865

Query: 865  IVIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLR 909
            +VIGK                  +  D S  L+++E G+V +V+L+ N +G  F  + +R
Sbjct: 866  VVIGKTITLPENDDELEGTTKKFTKRDASTFLRNSETGIVDQVMLTLNAEGYKFCKIRVR 925

Query: 910  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEA 969
             VR P +GDKF+S HGQKG  G    QE+ PFT +G+ PDI+INPHA PSR T G L+E 
Sbjct: 926  SVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLSPDIIINPHAIPSRMTIGHLIEC 985

Query: 970  ALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVR 1028
              GK   +  KG        ATPF    +V  I+  L   G+   G E +Y+G TG  + 
Sbjct: 986  LQGK--VSANKGEIGD----ATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKIN 1039

Query: 1029 SLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG 1088
            + IF+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC I+HG
Sbjct: 1040 AQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHG 1099

Query: 1089 AAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKA 1146
            AA  L ERLF +SD Y++H+C  C    +AN+               C+ C +   I + 
Sbjct: 1100 AAQFLRERLFEVSDPYRIHVCNLCGLIAIANLRNNTFE---------CKGCKNKTQISQV 1150

Query: 1147 NVPYGAKLLCQELFSMGITLKF 1168
             +PY AKLL QEL SM I  + 
Sbjct: 1151 RLPYAAKLLFQELMSMNIAPRL 1172


>gi|367030607|ref|XP_003664587.1| hypothetical protein MYCTH_2307570 [Myceliophthora thermophila ATCC
            42464]
 gi|347011857|gb|AEO59342.1| hypothetical protein MYCTH_2307570 [Myceliophthora thermophila ATCC
            42464]
          Length = 1276

 Score =  626 bits (1614), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 436/1295 (33%), Positives = 647/1295 (49%), Gaps = 171/1295 (13%)

Query: 4    DDNGFTDPTSLCDLG----EEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF 59
            DD+ +     L D+G           C +   ++F+  GLVS QI+S++EF    +Q   
Sbjct: 17   DDDQYETGNGLDDVGLADENAITPEDCWEVIAAYFDSKGLVSQQIDSFDEFTSTTIQSLV 76

Query: 60   DSFGETIVE---PGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARL 116
            D + +  ++   PG D  +  +   R   + F  V + KP+     G +   + P   R 
Sbjct: 77   DEYADLTLDHPNPGDDAGR--DIAMRRYDIHFDNVLISKPTLTEATG-ETTSLLPYECRD 133

Query: 117  QNMTYSSRMKVKV--QFQVYTQKRVTSDKFKTGREQYIQK--EV-----LSDETTN---- 163
            +N+TYS+ M  +V  + +V   + V        +++Y+ +  EV       +E T     
Sbjct: 134  RNLTYSAPMYCRVMKRARVAINEEVPLKDMDEEQQEYMARTGEVPKIIRWEEEDTGPSEG 193

Query: 164  ----------IIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVFVA 207
                      I +G++PVMVKS +C + G ++       +C +D GGYFII G+EKV +A
Sbjct: 194  AKGDDQKGDLIFLGKLPVMVKSQVCHLHGEDEESLFLLNECPYDQGGYFIINGSEKVLIA 253

Query: 208  QEQICLKRLWV-SNSMGWTVAYKSE-----NKRNRLIVRLVDMSKFEDIKGGEK------ 255
            QE+     + V     G +V+Y++E      K +RLI  L    K       EK      
Sbjct: 254  QERSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLISSL--QMKLHTKGSPEKGRLPNT 311

Query: 256  -VLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEF 314
              +++ ++  ++ + I+F ALG+ SD++I+N I +   D  +L  L   I +A   C + 
Sbjct: 312  VSVTLPYVREDVSLAIVFRALGIVSDEDILNHICYDRTDTQMLEALRPCIEEA--FCIQD 369

Query: 315  RKGRNALKYVDKLIKGTT----FPPGESTEECMNTYLFPSLHGTK----QKARFLGYMVK 366
            R+   AL ++ K   G           + +E +   + P +  T+    +KA FLGYMV 
Sbjct: 370  RE--IALDFIGKRGNGNAGQNRVNRVRAAKELLQKEMLPHISQTEGCETRKAFFLGYMVH 427

Query: 367  CLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR 426
             LLQ   GRR  D+RD F  KRL+LAG LL +  +  I    + +   ++R +  ++   
Sbjct: 428  KLLQCALGRRDPDDRDHFGKKRLDLAGPLLAKLFRGVIRRMTQDLMSYMKRCIDTNKNFS 487

Query: 427  PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
             +   +  S LTNGL  + +TG W    K     +G+   L R     TL  LRRT   +
Sbjct: 488  -LALGIKHSTLTNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPI 546

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSG 545
               GK+   R  H +HWG +C   TP+G+ CGLVKNL +   VS  +  +PI E +   G
Sbjct: 547  GRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPADPIVEFMIARG 606

Query: 546  MEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQS 605
            ME L +          KVFV+G W+G+ +D  + VS ++  RR+  +  +V + RD    
Sbjct: 607  MEVLEEYEPLQYPNATKVFVNGTWVGIHQDPKNLVSLVQGLRRKNVISFEVSLVRDIRDR 666

Query: 606  EVRIFMDAGRILRPLLVVE----------------NMGKIKSLEGKN---------YTFQ 640
            E +IF DAGR++RPL  VE                N   I  LE            + + 
Sbjct: 667  EFKIFSDAGRVMRPLFTVEQDPNSESGAEVGALILNKEHIARLEADKELGKYHPDYWGWP 726

Query: 641  ALLDHGIIELVGTEEEED---CCTAWGIKYLL-----KDIEDKKPI-------------- 678
             LL  G IE +  EEEE    C T   +         + IED   I              
Sbjct: 727  GLLKSGAIEYLDAEEEETVMICMTPEDLDNFRARKRGEVIEDTSGIGNNRIKTKPNPTTH 786

Query: 679  KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQ 738
             +THCE+  S LLG+   IIPF +H+ + R  YQS     QA+GF  TN S R+DT+++ 
Sbjct: 787  MYTHCEIHPSMLLGICASIIPFPDHNQSPRNTYQS-AMGKQAMGFFLTNYSKRMDTMANI 845

Query: 739  LFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRA 798
            L+YPQ+PL  T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++
Sbjct: 846  LYYPQKPLATTRSME-----------FLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQS 894

Query: 799  SLERGMFRSEHIRSY-----KAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGF 853
            S++RG+FRS   RSY     +  ++  E   K   SD       ++ K    D LD DG 
Sbjct: 895  SIDRGLFRSLFFRSYTDCEKRVGINIVEKFEKPNRSD------TLRLKHSTYDKLDADGI 948

Query: 854  PFIGANLQSGDIVIGKYADSGADH---------------SIKLKHTERGMVQKVVLSSND 898
               G  +   DI+IGK      D+               S  L+ TE G+V +VV+++N 
Sbjct: 949  VAPGVRVSGEDIIIGKTCPINPDNAELGQRSAQHVKRDASTPLRSTESGIVDQVVVTTNQ 1008

Query: 899  DGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFP 958
            DG  +  V +R  + P +GDKF+S HGQKG +G    QE+ PFT +GI PD++INPHA P
Sbjct: 1009 DGMRYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFTCEGITPDLIINPHAIP 1068

Query: 959  SRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERL 1018
            SR T   L+E  L K ++ L      G++  ATPF   +VD++++ L   G+   G E L
Sbjct: 1069 SRMTIAHLIECLLSK-VSTL-----KGMEGDATPFTEVTVDSVSDLLREHGYQSRGFEVL 1122

Query: 1019 YDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGE 1078
            Y G TG  +R+ +F GPT+YQRL HM +DK+  R  GP+  +TRQPV  R R GG++FGE
Sbjct: 1123 YHGHTGRKLRAQVFFGPTYYQRLRHMVDDKIHARARGPLQIMTRQPVEGRARDGGLRFGE 1182

Query: 1079 MERDCLIAHGAAANLHERLFTLSDSYQMHICRKC---KNVANVIQRVVGGGRKVRGPYCR 1135
            MERDC+IAHGAA+ L ERLF +SD++++HIC  C     +AN+ ++            CR
Sbjct: 1183 MERDCMIAHGAASFLKERLFEVSDAFRVHICEICGLMTPIANLTKQSF---------ECR 1233

Query: 1136 ICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
             C +   I + ++PY AKLL QEL SM I  +  T
Sbjct: 1234 PCKNKTKIAQVHMPYAAKLLFQELMSMNIAARMFT 1268


>gi|300707573|ref|XP_002995989.1| hypothetical protein NCER_100983 [Nosema ceranae BRL01]
 gi|239605241|gb|EEQ82318.1| hypothetical protein NCER_100983 [Nosema ceranae BRL01]
          Length = 1143

 Score =  626 bits (1614), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 416/1197 (34%), Positives = 623/1197 (52%), Gaps = 128/1197 (10%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
            FF + GLV  QI+S+++F+K  +Q+  D      V+        G    +  +++FGQ+ 
Sbjct: 17   FFEQKGLVGQQIDSFDQFVKTKMQEVIDESPLITVQSTLS---AGNETRKKITLKFGQIY 73

Query: 93   LDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYI 152
            + KP  +    G    + P  ARL+++TY S++ + +     ++  V  D+ +  R    
Sbjct: 74   VSKPPSYTEADGTTITLTPNEARLRDITYLSQLYIDIVKTTESESGVV-DQHRYSR---- 128

Query: 153  QKEVLSDETTNIIIGRIPVMVKSDLCWM------KGVEKGDCDFDHGGYFIIKGAEKVFV 206
                       I  G +PVMVKS  C        + ++ G+C++D GGYFII G+EKV +
Sbjct: 129  -----------IPFGSLPVMVKSSYCSTYKLSEEELIKIGECEYDVGGYFIINGSEKVII 177

Query: 207  AQEQICLKRLWV-SNSMGWTVAYKSENK-------RNRLIVRLVDMSKFEDIKGGEKVLS 258
            AQE++    ++V   S   + ++ +E +       +N   V L        I+     +S
Sbjct: 178  AQERMASNTIYVFKKSQPASYSHYAEIRSVPEKGAKNPSAVSLKLCRNPNVIR-----VS 232

Query: 259  VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGR 318
            + +   EIP++I++ ALG  SDKEI + I  T  D  + ++L  SI ++    D+     
Sbjct: 233  IPYAKQEIPLFIIYRALGFLSDKEITDHI-ITTNDDEMFDLLKESILESAVVQDQ----N 287

Query: 319  NALKYVDKLIKGTTFPPGESTEECMN-------TYLFPSLHGTKQ-----KARFLGYMVK 366
             AL Y+ K       P G S E+ +N         L P + GT++     KA FLGYMV+
Sbjct: 288  VALDYIGK----RAAPVGSSREKRINFAKDLLAKELLPHI-GTQEFCETKKAYFLGYMVQ 342

Query: 367  CLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR 426
             LL    GR++ D+RD +  KR++LAG LL    +          AK +Q+ + G R   
Sbjct: 343  KLLLVALGRKREDDRDHYGKKRMDLAGPLLASLFRSLYKKLCSETAKHMQKCIEGGRDFN 402

Query: 427  PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
             I   L AS +  G   A +TG W       +  +G+   L R N + TL  LRR    +
Sbjct: 403  -IALGLKASTIAQGFRYAIATGNWGDQAHAMQSKAGVAQVLNRYNFVSTLSHLRRVNTPI 461

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSG 545
            +  GK+   R  H +HWG IC   TP+G+ CGLVKNL +   +S  S  EPI E L   G
Sbjct: 462  EKEGKLAKPRQLHNTHWGMICPAETPEGQACGLVKNLSLMAYISVGSSSEPIVEFLEECG 521

Query: 546  MEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQS 605
            +E L + +   L    KVFV+G W+G+ +D    +S LR  RR  E+  +V I RD  + 
Sbjct: 522  LESLEEISHLQLQNATKVFVNGVWVGIHEDPEYLISSLRMLRRTLEIDKEVSIIRDIREK 581

Query: 606  EVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDC 659
            E++I  D+GR  RPL VV+N             E K  T+   +++G+IE +  EEEE  
Sbjct: 582  EIKIQSDSGRPCRPLFVVKNNKLCIDEAYSNKEEIKRCTWNDFIENGLIEFLDVEEEEVS 641

Query: 660  CTAWG------IKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQS 713
              A        +K  L+  ED   I +THCE+  + +LG+   +IPF +H+ + R  YQS
Sbjct: 642  MIAMSPDQLNSVKKDLRASEDLN-INYTHCEIHPATILGICASVIPFPDHNQSPRNTYQS 700

Query: 714  QKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYN 773
                 QA+G   TN  +R+DTLS+ LFYPQ+PL  T   +            +   EL  
Sbjct: 701  -AMVKQAMGIYATNFMLRMDTLSNILFYPQKPLVTTKSME-----------YIRFKELPP 748

Query: 774  GQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMV 833
            GQNAIVA+  + GYNQEDS++MN+++++RG+FRS   R+Y     ++E   +  + ++  
Sbjct: 749  GQNAIVAIASYTGYNQEDSIIMNQSAIDRGLFRSFFYRTYT----DQENTTRPGTHEEFC 804

Query: 834  NFGKIQSKIGRV-----DSLDDDGFPFIGANLQSGDIVIGKYADS--------------G 874
                ++S++ R+       LD+DG    G  +   D++IGK +                 
Sbjct: 805  K--PLRSEVIRMRNLNYSKLDNDGIIPTGTRVTGDDVLIGKVSPILDPERSTKGNPVYLK 862

Query: 875  ADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLE 934
             D S  ++ TE G V  V+++ N +G  F+ V +R  R P +GDKF+S H QKG +G   
Sbjct: 863  KDSSTSMRRTEDGFVDSVIVT-NKEGYKFAKVKVRSCRIPQMGDKFASRHAQKGTVGITL 921

Query: 935  SQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFA 994
            +QE+ PFT +GIVPDI+INPHA PSR T G L+E  +GK  A  G+      +  ATPF 
Sbjct: 922  NQEDMPFTSEGIVPDIIINPHAIPSRMTIGHLIECLMGKTCALTGE------EGDATPFN 975

Query: 995  TPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNT 1054
              +VD I+E+L    + + G E +Y+G TG  +R+ I+IGPT+YQRL HM +DK+  R  
Sbjct: 976  GVTVDNISEKLKEYNYQQRGFEVMYNGMTGHKLRAQIYIGPTYYQRLKHMVDDKIHARAK 1035

Query: 1055 GPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKN 1114
            GP+  LTRQPV  R R GG++FGEMERDC+I+HGA+A L ERL  +SD Y   IC  C  
Sbjct: 1036 GPLQILTRQPVEGRSRDGGLRFGEMERDCIISHGASAFLKERLMDVSDPYTCCICDLCGL 1095

Query: 1115 VANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
            +A   +R            C+ C++  ++    +PY  KLL QEL  M I  +  TE
Sbjct: 1096 IAIDTKRY---------NECKGCNNRTNLSLVEIPYAFKLLIQELMGMNIAPRIKTE 1143


>gi|357621065|gb|EHJ73034.1| hypothetical protein KGM_12615 [Danaus plexippus]
          Length = 1176

 Score =  626 bits (1614), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 418/1236 (33%), Positives = 635/1236 (51%), Gaps = 135/1236 (10%)

Query: 2    DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-D 60
            D++D+ + +   + D+  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   D
Sbjct: 3    DTEDDQYEE-EEVEDISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 61   SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
            S    +       S + E   +Y  ++F Q+ L KP+ +  +G     M P  ARL+N+T
Sbjct: 62   SPPIELQAEAQHSSGEIETPPKY-HLKFDQIYLSKPTHWEKDGAPS-PMMPNEARLRNLT 119

Query: 121  YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
            YS+ + V +   +  +     D  +T  ++               IG+IP+M++S  C +
Sbjct: 120  YSAPLYVDITKTIVKE---NEDPIETQHQK-------------TFIGKIPIMLRSTYCLL 163

Query: 181  KGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE--- 231
              +      E  +C  D GGYFII G+EKV +AQE++    ++V +  G   AYK+E   
Sbjct: 164  SNLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMQGGKYAYKTEIRS 223

Query: 232  ----NKRNRLIVRLVDMSKF-EDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKE 282
                + R    + +  M++  + IK    G++++++  ++  EIPI I+F ALG  +D++
Sbjct: 224  CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIVAIVPYIKQEIPIMIVFRALGFVADRD 283

Query: 283  IVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLI 328
            I+  I +  +D  ++ ++  S+ +A      N    F   R A         +KY  +++
Sbjct: 284  ILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALSFIGARGARPGVTKERRIKYAREIL 343

Query: 329  KGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKR 388
            +    P    ++ C             +KA FLGYMV  LL A  GRR+ D+RD + NKR
Sbjct: 344  QKEMLPHVGVSDFC-----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKR 392

Query: 389  LELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTG 448
            L+LAG LL    +    +  K +    Q+ +   +    +E  +   I+T+GL  + +TG
Sbjct: 393  LDLAGPLLAFLFRGLFKNLLKEVRMYAQKFIDKGKDFN-LELAIKTKIITDGLRYSLATG 451

Query: 449  AWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICF 508
             W    K  +  +G+   L R     TL  LRR    +   GK+   R  H + WG IC 
Sbjct: 452  NWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICP 511

Query: 509  LSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDG 567
              TP+G   GLVKNL +   +S  S   PI E L    ME L + A  ++    K+FV+G
Sbjct: 512  AETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNG 571

Query: 568  DWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN- 625
             W+G+ +D    ++ LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VEN 
Sbjct: 572  CWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENG 631

Query: 626  --------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKP 677
                    + ++K  +  NY +Q L+  G++E + T EEE    A     L +  E    
Sbjct: 632  SLLLKKKHIDQLKERDYNNYGWQNLVASGVVEYIDTLEEETVMIAMNPDDLQQIKEYAYC 691

Query: 678  IKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSH 737
              +THCE+  + +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H
Sbjct: 692  TTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAH 750

Query: 738  QLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNR 797
             LFYP +PL  T   +            L   EL  G N+IVA+  + GYNQEDS+++N 
Sbjct: 751  VLFYPHKPLVTTRSME-----------YLRFRELPAGINSIVAILCYTGYNQEDSVILNA 799

Query: 798  ASLERGMFRSEHIRSYK----AEVDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDD 850
            +++ERG FRS   RSYK      + ++E Q +   R++   M N           D LDD
Sbjct: 800  SAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMRN--------ALYDKLDD 851

Query: 851  DGFPFIGANLQSGDIVIGKYAD---------------SGADHSIKLKHTERGMVQKVVLS 895
            DG    G  +   D+VIGK                  +  D S  L+++E G+V +V+L+
Sbjct: 852  DGIIAPGIRVSGDDVVIGKTITLPENDDELEGTTKRFTKRDASTFLRNSETGIVDQVMLT 911

Query: 896  SNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPH 955
             N +G  F  + +R VR P +GDKF+S HGQKG  G    QE+ PFT +GI PDI+INPH
Sbjct: 912  LNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPH 971

Query: 956  AFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWG 1014
            A PSR T G L+E   GK   +  KG        ATPF    +V  I+  L   G+   G
Sbjct: 972  AIPSRMTIGHLIECIQGK--VSSNKGEIGD----ATPFNDAVNVQKISSLLQEYGYHLRG 1025

Query: 1015 TERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGI 1074
             E +Y+G TG  + + +F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG+
Sbjct: 1026 NEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGL 1085

Query: 1075 KFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGP 1132
            +FGEMERDC IAHGAA  L ERLF +SD Y++H+C  C    +AN+              
Sbjct: 1086 RFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE-------- 1137

Query: 1133 YCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
             C+ C +   I +  +PY AKLL QEL SM I  + 
Sbjct: 1138 -CKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRL 1172


>gi|322699819|gb|EFY91578.1| DNA-dependent RNA polymerase II beta subunit [Metarhizium acridum
            CQMa 102]
          Length = 1263

 Score =  626 bits (1614), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 430/1268 (33%), Positives = 650/1268 (51%), Gaps = 162/1268 (12%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEG-EWRYA 84
            C     SFF+  GLVS Q +S++EF +  +Q   + +    ++    PS  GE    R  
Sbjct: 27   CWTVISSFFDTKGLVSQQTDSFDEFTQTTIQDLVNEYSTITLDQPNPPSAAGEKVALRRY 86

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQV--YTQKRVTSD 142
             ++FG V + +P+  +   G    + P   R +N+TY+S + + +  +V    ++ +   
Sbjct: 87   EIKFGTVMVSRPTI-SETDGTVTSLLPYECRDRNLTYASPLYINITKKVSRAVEQDIPLK 145

Query: 143  KFKTGREQYIQK-------------EVLSDETTN--------IIIGRIPVMVKSDLCWMK 181
            +    + + +++             E   D+ T         + +G++P+MVKS +C + 
Sbjct: 146  ELDDAQREELKRTGEMPTKLVWEVEESAEDDDTGKSEDWKNMVFVGKLPIMVKSKICHLS 205

Query: 182  GVEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKS 230
              ++       +C +D GGYF+I G+EKV +AQE+     + V      +   +T   +S
Sbjct: 206  REQEDSLFMVNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSPYTYTAEIRS 265

Query: 231  E-NKRNRLIVRLVD--MSKFEDIKGG---EKVLSVYFLSTEIPIWILFFALGVSSDKEIV 284
               K +RLI  L      K +  +GG       ++ F+ +++PI I+F ALGV SD++I+
Sbjct: 266  ALEKGSRLISSLTLKLYGKGDSARGGFGQTIHTTLPFVKSDLPIAIVFRALGVVSDEDIL 325

Query: 285  NLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPG-------E 337
            N I +  +D  +L +L   I +A   C + R+   AL ++ K  +G     G        
Sbjct: 326  NHICYDRKDSQMLEMLRPCIEEA--FCVQDRE--VALDFIGK--RGNRDQAGLGRDKRVR 379

Query: 338  STEECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAG 393
              ++ +     P +  T+    +KA FLGYMV  LLQ   GRR+ D+RD F  KRL+LAG
Sbjct: 380  VAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLDLAG 439

Query: 394  ELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHP 453
             LL +  +  I      ++  L+R + G+R    +   +    L+NGL  + +TG W   
Sbjct: 440  PLLAKLFRGIIRRMNTELSNYLRRCVEGNRHFN-LAVGIKPGTLSNGLKYSLATGNWGDQ 498

Query: 454  FKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPD 513
             K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+
Sbjct: 499  KKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPE 558

Query: 514  GENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGV 572
            G+ CGLVKNL +   VS  S  EP+ E + N GME + +          K+FV+G W+GV
Sbjct: 559  GQACGLVKNLSLMCYVSVGSPAEPLIEFMINRGMEVVEEYEPLRYPHATKIFVNGVWVGV 618

Query: 573  CKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE-------- 624
             +D    VS++   RR+  L  +V + R+    E +IF DAGR++RP+  V+        
Sbjct: 619  HQDPKHLVSQVLDTRRKSYLQYEVSLVREIRDQEFKIFSDAGRVMRPVFTVQQEDDPETG 678

Query: 625  ----NMGKIKSLEGKNYTFQA--------------LLDHGIIELVGTEEEED---CCTAW 663
                ++   K L  K    QA              L+  G +E +  EEEE    C T  
Sbjct: 679  IEKGHLVLTKDLVNKLAKEQAEPPEDPSEKIGWEGLIRAGAVEYLDAEEEETAMICMTPE 738

Query: 664  GIK-YLLK--------DIED--KKPIK---------FTHCELDMSFLLGLSCGIIPFANH 703
             ++ Y L+        DI D   K +K         +THCE+  S +LG+   IIPF +H
Sbjct: 739  DLELYRLQKAGVALDDDIGDDLNKRLKTKTNPTTHMYTHCEIHPSMILGICASIIPFPDH 798

Query: 704  DHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHN 763
            + + R  YQS     QA+GF  TN S R+DT+++ L+YPQ+PL  T   +          
Sbjct: 799  NQSPRNTYQS-AMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSME---------- 847

Query: 764  HILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQ 823
              L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   RSY     ++E +
Sbjct: 848  -FLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYS----DQEKK 902

Query: 824  VKRRSSD---DMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA-------DS 873
            V    ++      +   ++ K G  D LDDDG    G  +   DI+IGK A       D 
Sbjct: 903  VGLNYTEVFEKPFHQSTLRMKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIDQESQDL 962

Query: 874  GA--------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHG 925
            G         D S  L+ TE G+V  V+L+ N D   +  V +R  + P +GDKF+S HG
Sbjct: 963  GTRTSVHQRRDISTPLRSTENGIVDSVILTVNADNVKYVKVRVRTTKIPQIGDKFASRHG 1022

Query: 926  QKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSG 985
            QKG +G    QE+ PFT +G+ PDI+INPHA PSR T   L+E  L K ++ L      G
Sbjct: 1023 QKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSK-VSTL-----EG 1076

Query: 986  LKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMS 1045
            ++  ATPF   +VD+++E L + G+   G E +Y+G TG+ +R+ +F GPT+YQRL HM 
Sbjct: 1077 MEGDATPFTDVTVDSVSELLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLRHMV 1136

Query: 1046 EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQ 1105
            +DK+  R  GPV  +TRQPV  R R GG++FGEMERDC+IAHGAAA L ERLF +SD+++
Sbjct: 1137 DDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAFR 1196

Query: 1106 MHICRKC---KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSM 1162
            +HIC  C     +AN+ ++            CR C +   I + ++PY AKLL QEL SM
Sbjct: 1197 VHICEICGLMTPIANLSKQSFE---------CRPCKNKTKIAQIHIPYAAKLLFQELQSM 1247

Query: 1163 GITLKFDT 1170
             I  +  T
Sbjct: 1248 NIAARMFT 1255


>gi|387593606|gb|EIJ88630.1| DNA-directed RNA polymerase II subunit RPB2 [Nematocida parisii
            ERTm3]
 gi|387597261|gb|EIJ94881.1| DNA-directed RNA polymerase II subunit RPB2 [Nematocida parisii
            ERTm1]
          Length = 1137

 Score =  626 bits (1614), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 416/1189 (34%), Positives = 616/1189 (51%), Gaps = 108/1189 (9%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYAS 85
            C K   +FF E GLV  Q++S+NEFI++ +Q+  D     IV   + P+ + E   +Y +
Sbjct: 9    CWKVVSAFFKEKGLVRQQLDSFNEFIQSTMQEVVDE-NSKIVLLAHSPTGEEEQARKY-T 66

Query: 86   MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
            + F Q+ + KP       G    MFP  AR++++TYS+ + +              D  K
Sbjct: 67   IEFKQIYVSKPPTITEPDGRTSSMFPNDARVRSLTYSASLYI--------------DIVK 112

Query: 146  TGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIK 199
            T  E    +EV S     + IG IP+M++S  C     +  D      C +D GGYFI+ 
Sbjct: 113  T--EHIGDEEVESRSYKKMPIGSIPIMLRSLYCVYSNTDDRDMNRIEECTYDQGGYFIVN 170

Query: 200  GAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSENKR---------NRLIVRLVDMSKFED 249
            G+EKV +A E++    +++   S      Y +E +          + L +RLV  +  + 
Sbjct: 171  GSEKVLIAHERMASNLVYIFKKSPPSPYLYTAEMRSVPDHGLRLPSSLTIRLVSRAS-DS 229

Query: 250  IKGGEKVLSVYF--LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA 307
              GG  +L         ++P+ ++F ALG  SDKEI+  I +   D  +L++L  SI +A
Sbjct: 230  ASGGGYLLRALLPHAKLDVPVVVIFRALGFVSDKEILEHICYDFSDTEMLSMLRPSIEEA 289

Query: 308  DNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTY---LFPSLHGTKQ-----KAR 359
                D+      AL Y+ K +    F   +  +   + +     P + GTK+     KA 
Sbjct: 290  FVIQDQ----GVALDYIGKRVAPAGFSKEKRIKFAKDLFQKEFLPHV-GTKEFCETKKAY 344

Query: 360  FLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDL 419
              GY +  LL    GRR  ++RD +  KRL+LAG L+    ++        +AK +QR +
Sbjct: 345  LFGYTINKLLMVALGRRSEEDRDHYGRKRLDLAGPLMTGLFRMLFKKMSNELAKYMQRCI 404

Query: 420  YGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDL 479
             G++ +  I   L  S LTNGL  + +TG W    K  +  +G+   L R N + TL  L
Sbjct: 405  DGNKDLNLI-VGLRTSTLTNGLRYSLATGNWGEQSKSMQARAGVAQVLNRYNYISTLSHL 463

Query: 480  RRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFE 539
            RR    +   GK+   R  H SHWG +C   TP+G+ CGLVKN  +   VS      +  
Sbjct: 464  RRVNTPIGRDGKLAKPRQLHSSHWGMVCPAETPEGQACGLVKNFALMSHVSVGTSSSVVV 523

Query: 540  QLFNSGMEKLADDASYS-LGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEI 598
            +L      +  ++ S S + G  KV V+G W+GV +     +  L+  RR  EL +++ I
Sbjct: 524  ELLEECGLEGLEEVSPSAIVGATKVLVNGSWVGVHRSPDDLMGTLKYLRRSGELSSEIAI 583

Query: 599  KRDELQSEVRIFMDAGRILRPLLVVEN--MGKIKSLEG---KNYTFQALLDHGIIELVGT 653
             RD  + E+RI  D GR  RPL +V+   +   + LE    + +T+  L+  G +E +  
Sbjct: 584  VRDLREKEIRINTDGGRACRPLFIVDKGVLRIERFLEANRHRKFTWDELMADGCVEFLDV 643

Query: 654  EEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQS 713
            EEEE    A     L         + +THCE+  + +LG+   ++PF +H+ + R  YQS
Sbjct: 644  EEEETAMIAVKPGDL-----KNTDVMYTHCEIQPATMLGVCASVVPFPDHNQSPRNTYQS 698

Query: 714  QKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYN 773
                 QA+G   TN  +R+D+LS+ L YPQ+PL  T              + L   EL +
Sbjct: 699  -AMGKQAMGMYATNFLMRMDSLSNVLCYPQKPLVITQ-----------SMNFLRFRELPS 746

Query: 774  GQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSY-------KAEVDNKEMQVKR 826
            GQNA+VA+  + GYNQEDS+VMNR +++RG+FRS   R+Y       K E     M+  R
Sbjct: 747  GQNAMVAIACYSGYNQEDSVVMNRGAVDRGLFRSFFYRTYSDMESRTKPEEQECFMKPDR 806

Query: 827  RSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---DSGADHSIKLKH 883
            RS   M N           + LD DG    G  +   D++IGK     D   D S  ++ 
Sbjct: 807  RSVQRMKN--------ANYEKLDMDGLVPPGTRVSGEDVLIGKTVSTPDGYKDASTTMRG 858

Query: 884  TERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTI 943
            TE G+V +V+L++ D G  ++ + +R  R+P +GDKF+S HGQKG +G + S E+ PFT 
Sbjct: 859  TESGVVDRVILTTKD-GYRYARIRVRSARTPQMGDKFASRHGQKGTIGIMLSPEDMPFTA 917

Query: 944  QGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITE 1003
             GI PDI+INPHA PSR T G L+E  LGK ++ +     SG +  ATPF   SV+ I+E
Sbjct: 918  DGITPDIIINPHAIPSRMTIGHLVECLLGK-VSCM-----SGKEGDATPFTGLSVEEISE 971

Query: 1004 QLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQ 1063
            +L + G+ K G E +Y G TG  +RS IFIGPT+YQRL HM  DK+  R  GPV  LTRQ
Sbjct: 972  ELQKHGYQKRGFEVMYSGFTGRKMRSQIFIGPTYYQRLKHMVADKIHARAHGPVQILTRQ 1031

Query: 1064 PVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVV 1123
            PV  R R GG++FGEMERDC+I+HGAA  L ERL  +SD +++ IC  C         V 
Sbjct: 1032 PVEGRSRDGGLRFGEMERDCMISHGAATFLKERLCDVSDKFEVFICNDCG--------VF 1083

Query: 1124 GGGRKVRGPY-CRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
              G K RG Y C++C +   +    +PY  KLL QE+ +M I+++   E
Sbjct: 1084 CAGNKERGLYLCQLCGTRTSVSMVYMPYAFKLLVQEMMAMCISVQMRLE 1132


>gi|324120602|dbj|BAJ78692.1| RNA polymerase II second largest subunit [Nipponatelura sp. 66-1]
          Length = 1175

 Score =  625 bits (1613), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 417/1215 (34%), Positives = 623/1215 (51%), Gaps = 122/1215 (10%)

Query: 17   LGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPSK 75
            +  E  +  C     ++F++ GLV  Q++S++EFI+  +Q+   DS    +       S 
Sbjct: 17   ISTELWQEACWIVINAYFDDKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSG 76

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT 135
            + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +      
Sbjct: 77   EIENPPRYL-LKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLTYSAPLYVDI------ 128

Query: 136  QKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCD 189
                T    K G       E +  +     IG+IP+M++S  C + G+      E  +C 
Sbjct: 129  ----TKTIIKDG------DEPVETQNQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECP 178

Query: 190  FDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVRLV 242
             D GGYFII G+EKV +AQE++    ++V +      A+KSE       + R    + + 
Sbjct: 179  LDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAFKSEIRSCQEHSSRPTSTLWVN 238

Query: 243  DMSKF-EDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSIL 297
             M++  + IK    G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  ++
Sbjct: 239  MMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMM 298

Query: 298  NILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEECM 343
             ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C 
Sbjct: 299  EMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFC- 357

Query: 344  NTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVH 403
                        +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL    +  
Sbjct: 358  ----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGL 407

Query: 404  IAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGI 463
              +  K +    Q+ +   +    +E  +   I+T+GL  + +TG W    K  +  +G+
Sbjct: 408  FKNLMKEVRMYAQKFIDRGKDFN-LELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 466

Query: 464  VANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNL 523
               L R     TL  LRR    +   GK+   R  H + WG IC   TP+G   GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 526

Query: 524  GVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSE 582
             +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    ++ 
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAISDATKIFVNGCWVGIHRDPEQLMAT 586

Query: 583  LRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKSL 632
            LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VEN         +  +K  
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGHLLLKKKHIDMLKEK 646

Query: 633  EGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLG 692
            E  NY +Q L+  G++E + T EEE    A     L +D E      +THCE+  + +LG
Sbjct: 647  EYNNYGWQVLVAQGVVEYIDTLEEETVMIAMTPDDLRQDKEYAYCTNYTHCEIHPAMILG 706

Query: 693  LSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMIS 752
            +   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T   
Sbjct: 707  VCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSM 765

Query: 753  DCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRS 812
            +            L   EL  G N++VA+  + GYNQEDS++MN +++ERG FRS   RS
Sbjct: 766  E-----------YLRFRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFRSVFFRS 814

Query: 813  YK-AEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA 871
            YK AE      Q ++           +++ I   D LDDDG    G  +   D+VIGK  
Sbjct: 815  YKDAESKGMGDQEEQFEKPSRTTCQGMRNAI--YDKLDDDGIIAPGIRVSGDDVVIGKTI 872

Query: 872  D---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCL 916
                            +  D S  L+++E G+V +V+L+ N +G  F  + +R VR P +
Sbjct: 873  TLPENDDELEGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQI 932

Query: 917  GDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIA 976
            GDKF+S HGQKG  G    QE+ PFT +G+ PDI+INPHA PSR T G L+E   GK   
Sbjct: 933  GDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGK--V 990

Query: 977  ALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGP 1035
            +  KG        ATPF    +V  I+  L   G+   G E +Y+G TG  + + IF+GP
Sbjct: 991  SSNKGEIGD----ATPFNDAVNVQKISTLLQEYGYHLRGNEVMYNGHTGRKINAQIFLGP 1046

Query: 1036 TFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHE 1095
            T+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC IAHGAA  L E
Sbjct: 1047 TYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRE 1106

Query: 1096 RLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAK 1153
            RLF +SD Y++H+C  C    +AN+               C+ C +   I +  +PY AK
Sbjct: 1107 RLFEVSDPYRVHVCNFCGIIAIANLRNNTFE---------CKGCKNKTQISQIRLPYAAK 1157

Query: 1154 LLCQELFSMGITLKF 1168
            LL QEL SM I  + 
Sbjct: 1158 LLFQELMSMNIAPRL 1172


>gi|255730467|ref|XP_002550158.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Candida
            tropicalis MYA-3404]
 gi|240132115|gb|EER31673.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Candida
            tropicalis MYA-3404]
          Length = 1240

 Score =  625 bits (1613), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 425/1279 (33%), Positives = 646/1279 (50%), Gaps = 158/1279 (12%)

Query: 3    SDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSF 62
            S D    DP    +  E   +  C     SFF E GLVS Q++S++EF++  +Q+     
Sbjct: 2    SADESMVDPYGYDEEIETITQEDCWTVISSFFQEKGLVSQQLDSFDEFVETSIQELVWED 61

Query: 63   GETIV-EPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTY 121
               I+ +P    S       RY  + FG++ + K S   G+G   H +FP+ ARL+N+TY
Sbjct: 62   SHLILDQPAQHTSVADHKNKRY-EIEFGKIYISKTSQTEGDG-TTHSVFPQEARLRNLTY 119

Query: 122  SSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDE----TTNIIIGRIPVMVKSDL 177
            SS + V +     T+++  SD  K    +   +E+  D+     + + +G++P+M++S  
Sbjct: 120  SSPLYVDM-----TKRKFESDDNKRKDNELEWEEIEVDDKEGPQSKVFLGKVPIMLRSKF 174

Query: 178  CWMKGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKS 230
            C + G+      E  +C +D GGYF+I G+EKV +AQE+     + V   +    +++ +
Sbjct: 175  CMLNGLAEHEFYELKECPYDMGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVA 234

Query: 231  E-----NKRNRLIVRLVDMSKFEDIKG--GEKV-LSVYFLSTEIPIWILFFALGVSSDKE 282
            E      K +RLI  +       D KG  G  +  ++ ++  +IPI I+F ALGV  D +
Sbjct: 235  EIRSALEKGSRLISSMQIKLYGRDEKGVAGRTIKATLPYIKEDIPIVIVFRALGVVPDGD 294

Query: 283  IVNLIDFTCEDCSILNILFAS------IHDADNKCDEF-RKG------RNALKYVDKLIK 329
            I+  I +   D  +L +L         I + +   D   R+G         ++Y   +++
Sbjct: 295  ILEHICYDANDWQMLEMLKPCVEEGFVIQEREVALDFIGRRGVLGIRREKRIQYAKDILQ 354

Query: 330  GTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRL 389
                P   + EE   T          +KA FLGYMV  LL     R++ D+RD F  KRL
Sbjct: 355  KELLP-NITQEEGFET----------RKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRL 403

Query: 390  ELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGA 449
            +LAG LL    ++      K +   +QR +  D     +   + +  +T+GL  + +TG 
Sbjct: 404  DLAGPLLAGLFRILFKKLTKDIYNYMQRCVENDSDFN-LTLAVKSQTITDGLRYSLATGN 462

Query: 450  WSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFL 509
            W    K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C  
Sbjct: 463  WGEQRKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPA 522

Query: 510  STPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGD 568
             TP+G+ CGLVKNL +   +S  S  EPI   L + G+E L D    +     ++FV+G 
Sbjct: 523  ETPEGQACGLVKNLSLMTCISVGSSSEPILGFLRDFGLEVLEDYVPSNAPDSTRIFVNGV 582

Query: 569  WIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVV----- 623
            W+GV +D    V  +R  RR  ++  +V I RD  + E +IF DAGR+ RPL +V     
Sbjct: 583  WVGVHRDPAQLVDYVRDLRRSGDISPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDNED 642

Query: 624  -----------ENMGKIKSLE--------------GKNYTFQALLDHGIIELVGTEEEED 658
                       E++ K+ + +               + YT+ +L+  GI+E V  EEEE 
Sbjct: 643  SPTKGDLMITKEHIRKLVAEDMDDDELEEDEEGGESRKYTWSSLVSEGIVEYVDAEEEET 702

Query: 659  CCTAWGIKYL---------------------------LKDIEDKKPIKFTHCELDMSFLL 691
               A     +                           +K         +THCE+  S +L
Sbjct: 703  IMIAMSPDDVKASKSTMSESEQQELQLQEQELDPAKRIKPTTSSNTHTYTHCEIHPSMIL 762

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G++  IIPF +H+ + R  YQS     QA+G   TN S+R+DT+++ L+YPQ+PL  T  
Sbjct: 763  GVAASIIPFPDHNQSPRNTYQS-AMGKQAMGVFLTNYSVRMDTMANILYYPQKPLATTRS 821

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
             +            L   EL  GQNA+VA+  + GYNQEDS++MN++S++RG+FRS   R
Sbjct: 822  ME-----------YLKFRELPAGQNAVVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFR 870

Query: 812  SYKAEVDNKEMQV----KRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVI 867
            SY      + M++    ++ S  D +       K G  + LD+DG    G  +   DI+I
Sbjct: 871  SYMDLEKRQGMKLLETFEKPSRSDTLRL-----KHGTYEKLDEDGLIAPGIRVSGEDIII 925

Query: 868  GKY----AD-----------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVR 912
            GK     AD           S  D S  L+ TE G+V +V+L++N DG  F  V +R  +
Sbjct: 926  GKTTPIPADTEELGQRTLHHSKRDASTPLRSTESGIVDQVLLTTNGDGSKFVKVRMRTTK 985

Query: 913  SPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALG 972
             P +GDKF+S HGQKG +G     E+ PF+ +GIVPD++INPHA PSR T   L+E  L 
Sbjct: 986  IPQIGDKFASRHGQKGTIGVTYRHEDMPFSAEGIVPDLIINPHAIPSRMTVAHLIECLLS 1045

Query: 973  KGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIF 1032
            K +++L     SG +  A+PF   + +AI + L   G+   G E +Y+G TG+ + + +F
Sbjct: 1046 K-VSSL-----SGFEGDASPFTDVTAEAIAKLLREHGYQSRGFEVMYNGHTGKKLMAQVF 1099

Query: 1033 IGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAAN 1092
             GPT+YQRL HM +DK+  R  GPV  LTRQPV  R R GG++FGEMERDC+IAHGAA  
Sbjct: 1100 FGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGF 1159

Query: 1093 LHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGA 1152
            L ERL   SD++++H+C  C  + +VI  +     K     CR C +  +I + ++PY A
Sbjct: 1160 LKERLMEASDAFRVHVCGMC-GLMSVIANL-----KKNQFECRSCKNKTNIYQIHIPYAA 1213

Query: 1153 KLLCQELFSMGITLKFDTE 1171
            KLL QEL +M I+ +  TE
Sbjct: 1214 KLLFQELMAMNISPRLYTE 1232


>gi|322711689|gb|EFZ03262.1| DNA-dependent RNA polymerase II beta subunit [Metarhizium anisopliae
            ARSEF 23]
          Length = 1262

 Score =  625 bits (1613), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 430/1268 (33%), Positives = 651/1268 (51%), Gaps = 162/1268 (12%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEG-EWRYA 84
            C     SFF+  GLVS Q +S++EF +  +Q   + +    ++    PS  GE    R  
Sbjct: 26   CWTVISSFFDTKGLVSQQTDSFDEFTQTTIQDLVNEYSTITLDQPNPPSAAGEKVALRRY 85

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQV--YTQKRVTSD 142
             ++FG V + +P+  +   G    + P   R +N+TY+S + + +  +V    ++ +   
Sbjct: 86   EIKFGTVMVSRPTI-SETDGTVTSLLPYECRDRNLTYASPLYINITKKVSRAVEQDIPLK 144

Query: 143  KFKTGREQYIQK-------------EVLSDETTN--------IIIGRIPVMVKSDLCWMK 181
            +    + + +++             E   D+ T         + +G++P+MVKS +C + 
Sbjct: 145  ELDDAQREELKRTGEMPTKLVWELEESAEDDDTGKSEDWKNMVFVGKLPIMVKSKICHLS 204

Query: 182  GVEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKS 230
              ++       +C +D GGYF+I G+EKV +AQE+     + V      +   +T   +S
Sbjct: 205  REQEDSLFMVNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSPYTYTAEIRS 264

Query: 231  E-NKRNRLI--VRLVDMSKFEDIKGG---EKVLSVYFLSTEIPIWILFFALGVSSDKEIV 284
               K +RLI  + L    K +  +GG       ++ F+ +++PI I+F ALGV SD++I+
Sbjct: 265  ALEKGSRLISSLSLKLYGKGDSARGGFGQTIHTTLPFVKSDLPIAIVFRALGVVSDEDIL 324

Query: 285  NLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPG-------E 337
            N I +  +D  +L +L   I +A   C + R+   AL ++ K  +G     G        
Sbjct: 325  NHICYDRKDSQMLEMLRPCIEEA--FCVQDRE--VALDFIGK--RGNRDQAGLGRDKRVR 378

Query: 338  STEECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAG 393
              ++ +     P +  T+    +KA FLGYMV  LLQ   GRR+ D+RD F  KRL+LAG
Sbjct: 379  VAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLDLAG 438

Query: 394  ELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHP 453
             LL +  +  I      ++  L+R + G+R    +   +    L+NGL  + +TG W   
Sbjct: 439  PLLAKLFRGIIRRMNTELSNYLRRCVEGNRHFN-LAVGIKPGTLSNGLKYSLATGNWGDQ 497

Query: 454  FKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPD 513
             K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+
Sbjct: 498  KKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPE 557

Query: 514  GENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGV 572
            G+ CGLVKNL +   VS  S  EP+ E + N GME + +          K+FV+G W+GV
Sbjct: 558  GQACGLVKNLSLMCYVSVGSPAEPLIEFMINRGMEVVEEYEPLRYPHATKIFVNGVWVGV 617

Query: 573  CKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE-------- 624
             +D    VS++   RR+  L  +V + R+    E +IF DAGR++RP+  V+        
Sbjct: 618  HQDPKHLVSQVLDTRRKSYLQYEVSLVREIRDQEFKIFSDAGRVMRPVFTVQQEDDPETG 677

Query: 625  ----NMGKIKSLEGKNYTFQA--------------LLDHGIIELVGTEEEED---CCTAW 663
                ++   K L  K    QA              L+  G +E +  EEEE    C T  
Sbjct: 678  IEKGHLVLTKELVNKLAKEQAEPPEDPSEKIGWEGLIRAGAVEYLDAEEEETSMICMTPE 737

Query: 664  GIK-YLLK--------DIED--KKPIK---------FTHCELDMSFLLGLSCGIIPFANH 703
             ++ Y L+        DI D   K +K         +THCE+  S +LG+   IIPF +H
Sbjct: 738  DLELYRLQKAGVALDDDIGDDLNKRLKTKTNPTTHMYTHCEIHPSMILGICASIIPFPDH 797

Query: 704  DHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHN 763
            + + R  YQS     QA+GF  TN S R+DT+++ L+YPQ+PL  T   +          
Sbjct: 798  NQSPRNTYQS-AMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSME---------- 846

Query: 764  HILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQ 823
              L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   RSY     ++E +
Sbjct: 847  -FLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYS----DQEKK 901

Query: 824  VKRRSSD---DMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA-------DS 873
            V    ++      +   ++ K G  D LDDDG    G  +   DI+IGK A       D 
Sbjct: 902  VGLNYTEVFEKPFHQSTLRMKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIDQESQDL 961

Query: 874  GA--------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHG 925
            G         D S  L+ TE G+V  V+L+ N D   +  V +R  + P +GDKF+S HG
Sbjct: 962  GTRTSVHQRRDISTPLRSTENGIVDSVILTVNADNVKYVKVRVRTTKIPQIGDKFASRHG 1021

Query: 926  QKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSG 985
            QKG +G    QE+ PFT +G+ PDI+INPHA PSR T   L+E  L K ++ L      G
Sbjct: 1022 QKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSK-VSTL-----EG 1075

Query: 986  LKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMS 1045
            ++  ATPF   +VD+++E L + G+   G E +Y+G TG+ +R+ +F GPT+YQRL HM 
Sbjct: 1076 MEGDATPFTDVTVDSVSELLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLRHMV 1135

Query: 1046 EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQ 1105
            +DK+  R  GPV  +TRQPV  R R GG++FGEMERDC+IAHGAAA L ERLF +SD+++
Sbjct: 1136 DDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAFR 1195

Query: 1106 MHICRKC---KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSM 1162
            +HIC  C     +AN+ ++            CR C +   I + ++PY AKLL QEL SM
Sbjct: 1196 VHICEICGLMTPIANLSKQSFE---------CRPCKNKTKIAQIHIPYAAKLLFQELQSM 1246

Query: 1163 GITLKFDT 1170
             I  +  T
Sbjct: 1247 NIAARMFT 1254


>gi|402294653|gb|AFQ55280.1| DNA-directed RNA polymerase II [Peltigera malacea]
          Length = 1255

 Score =  625 bits (1612), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 422/1257 (33%), Positives = 642/1257 (51%), Gaps = 146/1257 (11%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW-RYA 84
            C     SFF+  GLVS Q++S++EF+   +Q+         ++    PS   +    R  
Sbjct: 25   CWTVISSFFDSKGLVSQQLDSFDEFVSTTMQELVAENSVLTLDQNAPPSDSDDPILIRRY 84

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVY---------- 134
             ++FG V L +P+   G+G     M P+ ARL+N+TYSS + +++  +V           
Sbjct: 85   EIKFGTVLLSRPAMTEGDGSTS-TMLPQEARLRNLTYSSPLYLEMTKKVSIARERVVFEN 143

Query: 135  ----------TQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVE 184
                       QKR  +D      +  I+      + + + +G++P+M+KS  C +K + 
Sbjct: 144  ADEDPNPDSDAQKRFGAD---ANLDWVIEDGDDDQDPSKVFVGKLPIMLKSKYCILKDLG 200

Query: 185  KGD------CDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSE-N 232
            + +      C +D GGYF+I G+EKV +AQE+     + V      ++  +    +S   
Sbjct: 201  EAELYNWNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAPPSATPYVAEIRSAVE 260

Query: 233  KRNRLI--VRLVDMSKFEDIKGG--EKV-LSVYFLSTEIPIWILFFALGVSSDKEIVNLI 287
            K +RLI  +++   +K E+ KGG  + V  ++ ++ T++PI I+F ALG+ SD++I+N I
Sbjct: 261  KGSRLISSMQIKLFAKGENHKGGFGQTVKATLPYVKTDVPIGIVFRALGIVSDEDILNHI 320

Query: 288  DFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTE---ECMN 344
             +   D  +L  L   I +A    D       AL ++       +    +  +   + M 
Sbjct: 321  CYDRNDTQMLEKLKPCIEEAFVIQDR----EVALDWIGSRGNSQSLSRPKRVKYARDIMQ 376

Query: 345  TYLFPSLHGT----KQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLEREL 400
              L P +  T     +KA FLGYMV  +LQ   GRR+ D+RD F  KRL+LAG LL    
Sbjct: 377  KELLPHISQTDGSETKKAFFLGYMVHRMLQCALGRREVDDRDHFGKKRLDLAGPLLAGLF 436

Query: 401  KVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERI 460
            ++      K + K LQ+ +  +R    +   + ++ LTNGL  + +TG W    K     
Sbjct: 437  RMLFNKLTKDVFKYLQKCVENNREFN-LTLGVKSTTLTNGLKYSLATGNWGDQKKAASSK 495

Query: 461  SGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLV 520
            +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLV
Sbjct: 496  AGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLV 555

Query: 521  KNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSF 579
            KNL +   ++  +  EPI + +    ME L +          KVFV+G W+GV +D    
Sbjct: 556  KNLALMCYITVGTPCEPIIDFMNQRNMEMLEEYEPLRSPNATKVFVNGVWVGVHRDPAHL 615

Query: 580  VSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN-------------- 625
            VS ++  RR   +  +V + RD    E +IF DAGR+ RPL V++N              
Sbjct: 616  VSNVQDLRRGHIISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDTRSMNYGNLVLTK 675

Query: 626  --MGKIKS------------LEGKNYTFQALLDHGIIELVGTEEEE---------DCCTA 662
              + +++             LE +   +  L++ G++E V  EEEE         D  T+
Sbjct: 676  EHIARLEEDKEAAIGMDRDELEARQMGWDGLVNQGVVEYVDAEEEETVMIVMTPGDLETS 735

Query: 663  WGI---KYLLKDIED-----------KKPIKFTHCELDMSFLLGLSCGIIPFANHDHARR 708
              I   K +  + ED           +    +THCE+  S +LG+   IIPF +H+ + R
Sbjct: 736  RQIQLGKAVPGNAEDEPNKRVNAMSHRSAQTWTHCEIHPSMILGICASIIPFPDHNQSPR 795

Query: 709  VLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPR 768
              YQS     QA+G   TN   R+DT+++ L+YPQ+P+  T   +            L  
Sbjct: 796  NTYQS-AMGKQAMGVFLTNYDQRMDTMANILYYPQKPMATTRSME-----------FLKF 843

Query: 769  PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRS 828
             EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   RSY  +     M +  + 
Sbjct: 844  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRIGMSIVEQF 903

Query: 829  SDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA----DSGA--------- 875
               M     ++ K G  + LDDDG    G  +   D++IGK A    DS           
Sbjct: 904  EKPM-RTDTLRLKHGTYEKLDDDGIVAPGVRVSGEDMIIGKTAPIPPDSEELGQRTKLHV 962

Query: 876  --DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
              D S  L+ TE G+V +V+L++N +G  F  V +R  + P +GDKF+S HGQKG +G  
Sbjct: 963  KRDASTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 1022

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
              QE+ PFT +G+VPD++INPHA PSR T   L+E  L K ++AL      G +  ATPF
Sbjct: 1023 YRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSK-VSAL-----RGFEGDATPF 1076

Query: 994  ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
               +VD++++ L   G+   G E +Y+  TG  + + +F+GPT+YQRL HM +DK+  R 
Sbjct: 1077 TEVTVDSVSKILRAHGYQSRGFEVMYNAHTGLKLVAQVFLGPTYYQRLRHMVDDKIHARA 1136

Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
             GPV  LTRQPV  R R GG++FGEMERDC+IAHGA+A L ERLF +SD++++HIC  C 
Sbjct: 1137 RGPVQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFEVSDAFRVHICDICG 1196

Query: 1114 NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
             +  V         K     CR C +   I + ++PY AKLL QEL SM I  +  T
Sbjct: 1197 LMTPV------ANLKKNSFECRPCKNKTRISQVHIPYAAKLLFQELASMNIAARMYT 1247


>gi|68300810|gb|AAY89346.1| RNA polymerase II second largest subunit [Nicotiana sylvestris]
          Length = 1087

 Score =  625 bits (1612), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 402/1127 (35%), Positives = 603/1127 (53%), Gaps = 111/1127 (9%)

Query: 104  GDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTN 163
            G+   +FP+ ARL+N+TYS+ + V V       KRV     K G +   ++   + + T 
Sbjct: 7    GETATLFPKAARLRNLTYSAPLYVDVT------KRV----IKKGHDG--EEVTETQDFTK 54

Query: 164  IIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLW 217
            + IG++P+M++S  C +         E G+C  D GGYFII G+EKV +AQE++    ++
Sbjct: 55   VFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEKVLIAQEKMSTNHVY 114

Query: 218  V-----SNSMGWTVAYKS-ENKRNR----LIVRLVDMSKFEDIKGGEKV-LSVYFLSTEI 266
            V      N   +    +S    +NR    + VR++  +  +    G+ +  ++ ++ TEI
Sbjct: 115  VFKKRQPNKYAFVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEI 174

Query: 267  PIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDK 326
            PI I+F ALG  +DK+I+  I +   D  ++ +L  S+ +A       +  + AL Y+ K
Sbjct: 175  PIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPSLEEAF----VIQNQQVALDYIGK 230

Query: 327  LIKGTTFPPGES-----TEECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRRK 377
              +G T            +E +   + P +    +   +KA + GY++  LL    GRR 
Sbjct: 231  --RGATVGVTREKRIKYAKEILQKEMLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRA 288

Query: 378  CDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASIL 437
             D+RD + NKRL+LAG LL    ++      + +   +Q+ +   + V  +++ + A  +
Sbjct: 289  EDDRDHYGNKRLDLAGPLLGGXFRMLFRKLTRDVRAYVQKXVDNGKDVN-LQFAIKAKTI 347

Query: 438  TNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARY 497
            T+GL  + +TG W        R +G+   L R     TL  LRR    +   GK+   R 
Sbjct: 348  TSGLKYSLATGNWGQANAAGTR-AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQ 406

Query: 498  PHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYS 556
             H S WG +C   TP+G+ CGLVKNL +   ++  S   PI E L   G E   + +   
Sbjct: 407  LHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAV 466

Query: 557  LGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRI 616
            +    K+FV+G W+G+ +D    V  LRR RRR ++ T+V + RD    E+RI+ D GR 
Sbjct: 467  IPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRC 526

Query: 617  LRPLLVVENM------GKIKSLEGKNYT----FQALLDHGIIELVGTEEEEDCCTAWGIK 666
             RPL +VE          I++L+ +       +  L+  G IE + TEEEE    +  I 
Sbjct: 527  SRPLFIVEKQRLLIKKKDIQTLQQRESPEEGGWHDLVAKGYIEYIDTEEEETTMISMTIN 586

Query: 667  YLLK---DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGF 723
             L +   + E+     +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G 
Sbjct: 587  DLXQARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGI 645

Query: 724  PTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNV 783
              TN   R+DTL++ L+YPQ+PL  T   + L      H   LP      G NAIVA++ 
Sbjct: 646  YVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHL------HFRQLP-----AGINAIVAISC 694

Query: 784  HLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK------ 837
            + GY+QEDS++MN++S++RG FRS   RSY+ E       VK        +FG+      
Sbjct: 695  YSGYSQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE-------DFGRPDRAST 747

Query: 838  IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD-------------SGADHSIKLKHT 884
            +  + G  D LDDDG    G  +   D++IGK                +  DHS  L+H+
Sbjct: 748  MGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHS 807

Query: 885  ERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQ 944
            E GMV +V+L++N DG  F  V +R VR P +GDKFSS HGQKG +G   +QE+ P+T++
Sbjct: 808  ETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVE 867

Query: 945  GIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQ 1004
            GI PDI++NPHA PSR T GQL+E  +GK  A +GK      +  ATPF   +VD I++ 
Sbjct: 868  GITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK------EGDATPFTDVTVDNISKA 921

Query: 1005 LHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQP 1064
            LH+ G+   G E +Y+G TG  + ++IF+GPT+YQRL HM +DK+  R  GPV  LTRQP
Sbjct: 922  LHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP 981

Query: 1065 VADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVG 1124
               R R GG++FGEMERDC+IAHGAA  L ERLF  SD+Y++H+C +C  +A        
Sbjct: 982  AEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAI------- 1034

Query: 1125 GGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
               K     CR C +  DIV+ ++PY  KLL QEL +M I  +  T+
Sbjct: 1035 ANLKKSSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1081


>gi|227826393|gb|ACP41921.1| RNA polymerase IV, partial [Heliosperma pusillum]
          Length = 380

 Score =  625 bits (1611), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 299/386 (77%), Positives = 338/386 (87%), Gaps = 8/386 (2%)

Query: 624  ENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHC 683
            EN+ KIK L+G  ++FQ LLD GI+EL+G EEEEDC TAW IKYL    + K   K+THC
Sbjct: 1    ENLRKIKLLKGDEFSFQTLLDKGILELIGVEEEEDCRTAWEIKYLFTGEKGKGLEKYTHC 60

Query: 684  ELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQ 743
            ELD+SFLLG+SCGIIPFANHDHARRVLYQS+KHS QAIG+ TTNP+IR+DTLSHQ++YPQ
Sbjct: 61   ELDLSFLLGVSCGIIPFANHDHARRVLYQSEKHSGQAIGYATTNPNIRIDTLSHQMYYPQ 120

Query: 744  RPLFRTMISDCLGKPGY--GHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLE 801
            RPLFR++I+D LGK G+  G N ILP+ E +NGQNAI+AVNVHLGYNQEDS+VMNRASLE
Sbjct: 121  RPLFRSVIADSLGKAGHPLGRNQILPKAEFFNGQNAILAVNVHLGYNQEDSIVMNRASLE 180

Query: 802  RGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQ 861
            RGMFR+EHIRSYKAEVDNK+   KRR  DD V+FGKIQSK+GRVDSLDDDGFP IGANLQ
Sbjct: 181  RGMFRTEHIRSYKAEVDNKDSLEKRRKFDDAVSFGKIQSKLGRVDSLDDDGFPHIGANLQ 240

Query: 862  SGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFS 921
            SGDI+IG+ ++SG DHSIKLKHTE+GMVQKV+LS+NDDGKNF+VVSLRQVRSPCLGDKFS
Sbjct: 241  SGDIIIGRSSESGTDHSIKLKHTEKGMVQKVLLSANDDGKNFAVVSLRQVRSPCLGDKFS 300

Query: 922  SMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKG 981
            SMHGQKGVLGFLESQENFPFT QGIVPDIVINPHAFPSRQTP QLLEAALGKGIA     
Sbjct: 301  SMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPAQLLEAALGKGIA----- 355

Query: 982  ICSGLKRYATPFATPSVDAITEQLHR 1007
             C G  RYATPF+TPSV++I EQLHR
Sbjct: 356  -CGGTLRYATPFSTPSVESIIEQLHR 380


>gi|324120610|dbj|BAJ78696.1| RNA polymerase II second largest subunit [Mnais pruinosa pruinosa]
          Length = 1175

 Score =  625 bits (1611), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 416/1222 (34%), Positives = 628/1222 (51%), Gaps = 134/1222 (10%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPS 74
            ++  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S
Sbjct: 16   EISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTS 75

Query: 75   KKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVY 134
             + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +     
Sbjct: 76   GEIENPPRYL-LKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLTYSAPLYVDI----- 128

Query: 135  TQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDC 188
                 T    K G      +E +  +     IG+IP+M++S  C + G+      E  +C
Sbjct: 129  -----TKTVAKEG------EEPIETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNEC 177

Query: 189  DFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVRL 241
              D GGYFII G+EKV +AQE++    ++V +      A+K+E       + R    + +
Sbjct: 178  PLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKFAFKAEIRSCLEHSSRPTSTLWV 237

Query: 242  VDMSKF-EDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
              M++  + IK    G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  +
Sbjct: 238  NMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 297

Query: 297  LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
            + ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C
Sbjct: 298  MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKEKRVKYAREILQKEMLPHVGVSDFC 357

Query: 343  MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                         +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL    + 
Sbjct: 358  -----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 403  HIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISG 462
               +  K +    Q+ +   +    +E  +   I+T+GL  + +TG W    K  +  +G
Sbjct: 407  LFKNLMKEVRMYAQKFIDRGKDFN-LELAIKTKIITDGLRYSLATGNWGDQKKAHQARAG 465

Query: 463  IVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKN 522
            +   L R     TL  LRR    +   GK+   R  H + WG IC   TP+G   GLVKN
Sbjct: 466  VSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKN 525

Query: 523  LGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVS 581
            L +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    ++
Sbjct: 526  LALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMA 585

Query: 582  ELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKS 631
             LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VEN         +  +K 
Sbjct: 586  TLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGTLLLKKRHIEMLKE 645

Query: 632  LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLL 691
             E  NY +Q L+  G++E + T EEE    A   + L ++ E      +THCE+  + +L
Sbjct: 646  REYNNYGWQVLVASGVVEYIDTLEEETVMIAMSPEDLRQEKEYAYCTTYTHCEIHPAMIL 705

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T  
Sbjct: 706  GVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRS 764

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
             +            L   EL  G N++VA+  + GYNQEDS++MN +++ERG FRS   R
Sbjct: 765  ME-----------YLRFRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFRSVFYR 813

Query: 812  SYKAE----VDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGD 864
            SYK +    V ++E Q +   R +   M N           D LDDDG    G  +   D
Sbjct: 814  SYKDQESKRVGDQEEQFEKPTRATCQGMRN--------AIYDKLDDDGIIAPGVRVSGDD 865

Query: 865  IVIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLR 909
            +VIGK                  +  D S  L+++E G+V +V+++ N +G  F  + +R
Sbjct: 866  VVIGKTITLPENDDELEGTTKRFTKRDASTFLRNSETGIVDQVMITLNSEGYKFCKIRVR 925

Query: 910  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEA 969
             VR P +GDKF+S HGQKG  G    QE+ PFT +G+ PDI+INPHA PSR T G L+E 
Sbjct: 926  SVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIEC 985

Query: 970  ALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVR 1028
              GK   +  KG        ATPF    +V  I+  L   G+   G E +++G TG  + 
Sbjct: 986  LQGK--VSSNKGEIGD----ATPFNDAVNVQKISSLLQEYGYQLRGNEVMFNGHTGRKIN 1039

Query: 1029 SLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG 1088
            + IF+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC IAHG
Sbjct: 1040 AQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHG 1099

Query: 1089 AAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKA 1146
            AA  L ERLF +SD Y++H+C  C    +AN+               C+ C +   I + 
Sbjct: 1100 AAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---------CKGCKNKTQISQV 1150

Query: 1147 NVPYGAKLLCQELFSMGITLKF 1168
             +PY AKLL QEL SM I  + 
Sbjct: 1151 RLPYAAKLLFQELMSMNIAPRL 1172


>gi|324120604|dbj|BAJ78693.1| RNA polymerase II second largest subunit [Thermobia domestica]
          Length = 1175

 Score =  625 bits (1611), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 416/1217 (34%), Positives = 626/1217 (51%), Gaps = 124/1217 (10%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPS 74
            ++  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S
Sbjct: 16   EISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTS 75

Query: 75   KKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVY 134
             + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +     
Sbjct: 76   GEIETPPRYL-LKFEQIYLSKPTHWEKDGAPT-PMMPNEARLRNLTYSAPLYVDI----- 128

Query: 135  TQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDC 188
                 T    K G      ++ +  +     IG+IP+M++S  C + G+      E  +C
Sbjct: 129  -----TKTVIKEG------EDPVETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNEC 177

Query: 189  DFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVRL 241
              D GGYFII G+EKV +AQE++    ++V +      AYK+E       + R    + +
Sbjct: 178  PLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKAEIRSCLEHSSRPTSTLWV 237

Query: 242  VDMSKF-EDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
              M++  + IK    G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  +
Sbjct: 238  NMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 297

Query: 297  LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
            + ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C
Sbjct: 298  MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKEKRIKYAKEILQKEMLPHVGVSDFC 357

Query: 343  MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                         +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL    + 
Sbjct: 358  -----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 403  HIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISG 462
               +  K +    Q+ +   +    +E  +   I+T+GL  + +TG W    K     +G
Sbjct: 407  LFKNLMKEVRMYAQKFIDRGKDFN-LELAIKTKIITDGLKYSLATGNWGDQKKAHLARAG 465

Query: 463  IVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKN 522
            +   L R     TL  LRR    +   GK+   R  H + WG IC   TP+G   GLVKN
Sbjct: 466  VSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKN 525

Query: 523  LGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVS 581
            L +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    ++
Sbjct: 526  LALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMA 585

Query: 582  ELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKS 631
             LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+V+N         +  +K 
Sbjct: 586  TLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVDNGKLLLKKRHIDMLKE 645

Query: 632  LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLL 691
             E  NY +Q L+  G++E + T EEE    A     L +D E      +THCE+  + +L
Sbjct: 646  REYNNYGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQDKEYAYCTTYTHCEIHPAMIL 705

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T  
Sbjct: 706  GVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNYHVRMDTLAHVLYYPHKPLVTTRS 764

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
             +            L   EL  G N++VA+  + GYNQEDS++MN +++ERG FRS   R
Sbjct: 765  ME-----------YLRFRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFRSVFFR 813

Query: 812  SYK-AEVD---NKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVI 867
            SYK AE     ++E Q +R + +          +    D LDDDG    G  +   D+VI
Sbjct: 814  SYKDAESKRFCDQEEQFERPTRNTCQGM-----RNAIYDKLDDDGIIAPGVRVSGDDVVI 868

Query: 868  GKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVR 912
            GK                  +  D S  L+++E G+V +V+++ N +G  F  + +R VR
Sbjct: 869  GKTITLPDNEDELEGTTKRYTKRDASTFLRNSETGIVDQVMITLNSEGYKFCKIRVRSVR 928

Query: 913  SPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALG 972
             P +GDKF+S HGQKG  G    QE+ PFT +GI PDI+INPHA PSR T G L+E   G
Sbjct: 929  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 988

Query: 973  KGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLI 1031
            K   +  KG        ATPF    +V  I+  L   G+   G E +Y+G TG  + + I
Sbjct: 989  K--VSANKGEIGD----ATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQI 1042

Query: 1032 FIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAA 1091
            F+GPT+YQRL HM +DK+  R  GP+  L RQP+  R R GG++FGEMERDC IAHGAA 
Sbjct: 1043 FLGPTYYQRLKHMVDDKIHSRARGPLQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQ 1102

Query: 1092 NLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYG 1151
             L ERLF +SD Y++H+C  C  +A      +   R      C+ C +   I +  +PY 
Sbjct: 1103 FLRERLFEVSDPYRIHVCNFCGLIA------IANLRNSTFE-CKGCKNKTQISQVRLPYA 1155

Query: 1152 AKLLCQELFSMGITLKF 1168
            AKLL QEL SM I  + 
Sbjct: 1156 AKLLFQELMSMNIAPRL 1172


>gi|324120638|dbj|BAJ78710.1| RNA polymerase II second largest subunit [Tenodera aridifolia]
          Length = 1175

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 417/1222 (34%), Positives = 626/1222 (51%), Gaps = 134/1222 (10%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPS 74
            ++  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S
Sbjct: 16   EISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTS 75

Query: 75   KKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVY 134
             + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +     
Sbjct: 76   GEIENPPRYL-LKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLTYSAPLYVDI----- 128

Query: 135  TQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDC 188
                 T    K G      +E +  +     IG+IP+M++S  C + G+      E  +C
Sbjct: 129  -----TKTIVKDG------EEPIETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNEC 177

Query: 189  DFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVRL 241
              D GGYFII G+EKV +AQE++    ++V +      AYK+E       + R    + +
Sbjct: 178  PLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKFAYKAEIRSCLEHSSRPTSTLWV 237

Query: 242  VDMSKF-EDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
              M++  + IK    G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  +
Sbjct: 238  NMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 297

Query: 297  LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
            + ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C
Sbjct: 298  MEMVKPSLDEAFVIQEQNIALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFC 357

Query: 343  MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                         +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL    + 
Sbjct: 358  -----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 403  HIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISG 462
               +  K +    Q+ +   +    +E  +   I+T+GL  + +TG W    K     +G
Sbjct: 407  LFKNLMKEVRMYAQKFIDKGKDFN-LELAIKTKIITDGLRYSLATGNWGDQKKAHMARAG 465

Query: 463  IVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKN 522
            +   L R     TL  LRR    +   GK+   R  H + WG IC   TP+G   GLVKN
Sbjct: 466  VSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKN 525

Query: 523  LGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVS 581
            L +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    ++
Sbjct: 526  LALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMA 585

Query: 582  ELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVE---------NMGKIKS 631
             LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VE         ++  +K 
Sbjct: 586  TLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVEGGSLLLKKRHIDMLKE 645

Query: 632  LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLL 691
             E  NY +Q L+  G++E + T EEE    +     L +D E      +THCE+  + +L
Sbjct: 646  REYNNYGWQVLVASGVVEYIDTLEEETVMISMSPDDLRQDKEYAYCTTYTHCEIHPAMIL 705

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T  
Sbjct: 706  GVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRS 764

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
             +            L   EL  G N+IVA+  + GYNQEDS++MN +++ERG FRS   R
Sbjct: 765  ME-----------YLRFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGFFRSVFFR 813

Query: 812  SYK----AEVDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGD 864
            SYK      + ++E Q +   R++   M N           D LDDDG    G  +   D
Sbjct: 814  SYKDAESKRIGDQEEQFEKPTRQTCQGMRN--------ALYDKLDDDGIISPGIRVSGDD 865

Query: 865  IVIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLR 909
            +VIGK                  +  D S  L+++E G+V +V+L+ N +G  F  + +R
Sbjct: 866  VVIGKTITLPDNEDELEGTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVR 925

Query: 910  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEA 969
             VR P +GDKF+S HGQKG  G    QE+ PFT +G+ PDI+INPHA PSR T G L+E 
Sbjct: 926  SVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIEC 985

Query: 970  ALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVR 1028
              GK   +  KG        ATPF    +V  I+  L   G+   G E +Y+G TG  + 
Sbjct: 986  LQGK--VSSNKGEIGD----ATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKIN 1039

Query: 1029 SLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG 1088
            + IF+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC IAHG
Sbjct: 1040 AQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHG 1099

Query: 1089 AAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKA 1146
            AA  L ERLF +SD Y++H+C  C    +AN+               C+ C +   I + 
Sbjct: 1100 AAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---------CKGCKNKTQISQV 1150

Query: 1147 NVPYGAKLLCQELFSMGITLKF 1168
             +PY AKLL QEL +M I  + 
Sbjct: 1151 RLPYAAKLLFQELMAMNIAPRL 1172


>gi|324120618|dbj|BAJ78700.1| RNA polymerase II second largest subunit [Aposthonia japonica]
          Length = 1150

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 414/1210 (34%), Positives = 622/1210 (51%), Gaps = 130/1210 (10%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPSKKGEGEWRYA 84
            C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S + E   RY 
Sbjct: 1    CWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHASGEIETPPRYL 60

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKF 144
             ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +       K +  D  
Sbjct: 61   -LKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLTYSAPLYVDIT------KTIVRDG- 111

Query: 145  KTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFII 198
                     +E +  +     IG+IP+M++S  C + G+      E  +C  D GGYFII
Sbjct: 112  ---------EEPIETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFII 162

Query: 199  KGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVRLVDMSKF-EDI 250
             G+EKV +AQE++    ++V +      AYK+E       + R    + +  M++  + I
Sbjct: 163  NGSEKVLIAQEKMATNTVYVFSMKDGKYAYKTEIRSCQEHSSRPTSTLWVNMMARGGQSI 222

Query: 251  KG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHD 306
            K    G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  ++ ++  S+ +
Sbjct: 223  KKSAIGQRIIAILPYIRQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDE 282

Query: 307  A-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEECMNTYLFPSLH 352
            A      N    F   R A         +KY  ++++    P    ++ C          
Sbjct: 283  AFVIQEQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFC---------- 332

Query: 353  GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMA 412
               +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL    +    +  K + 
Sbjct: 333  -ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLTKEVR 391

Query: 413  KALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANP 472
               Q+ +   +    +E  +   I+T+GL  + +TG W    K  +  +G+   L R   
Sbjct: 392  MYAQKFIDRGKDFN-LELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTF 450

Query: 473  LQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST- 531
              TL  LRR    +   GK+   R  H + WG IC   TP+G   GLVKNL +   +S  
Sbjct: 451  ASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVG 510

Query: 532  SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKE 591
            S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    ++ LR+ RR+ +
Sbjct: 511  SQPAPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMD 570

Query: 592  L-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKSLEGKNYTFQA 641
            +  ++V + RD    E+RI+ DAGRI RPLL+VEN         +  +K  E  NY +Q 
Sbjct: 571  IIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKRHVDMLKEREYNNYGWQV 630

Query: 642  LLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFA 701
            L+  G++E + T EEE    A     L +D E      +THCE+  + +LG+   IIPF 
Sbjct: 631  LVAQGVVEYIDTLEEETVMIAMSTDDLKQDKEFAYCNTYTHCEIHPAMILGVCASIIPFP 690

Query: 702  NHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYG 761
            +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T   +        
Sbjct: 691  DHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSME-------- 741

Query: 762  HNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYK----AEV 817
                L   EL  G N++VA+  + GYNQEDS++MN +++ERG FRS   RSYK      +
Sbjct: 742  ---YLRFRELPAGINSVVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDAESKRI 798

Query: 818  DNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD-- 872
             ++E Q +   R++   M N           D LDDDG    G  +   D+VIGK     
Sbjct: 799  GDQEEQFEKPTRQTCQGMRN--------ALYDKLDDDGIISPGIRVSGDDVVIGKTITLP 850

Query: 873  -------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDK 919
                         +  D S  L+++E G+V +V+L+ N +G  F  + +R VR P +GDK
Sbjct: 851  DNEDELEGSTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDK 910

Query: 920  FSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALG 979
            F+S HGQKG  G    QE+ PFT +G+ PDI+INPHA PSR T G L+E   GK   +  
Sbjct: 911  FASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGK--VSAN 968

Query: 980  KGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFY 1038
            KG        ATPF    +V  I+  L   G+   G E +Y+G TG  + + IF+GPT+Y
Sbjct: 969  KGEIGD----ATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTYY 1024

Query: 1039 QRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLF 1098
            QRL HM +DK+  R  GP+  L RQP+  R R GG++FGEMERDC I+HGAA  L ERLF
Sbjct: 1025 QRLKHMVDDKIHSRARGPLQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLF 1084

Query: 1099 TLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQE 1158
             +SD Y++H+C  C  +A           +     C+ C +   I +  +PY AKLL QE
Sbjct: 1085 EVSDPYRIHVCNFCGLIAI-------ANLRSNTFECKGCKNKTQISQVRLPYAAKLLFQE 1137

Query: 1159 LFSMGITLKF 1168
            L SM I  + 
Sbjct: 1138 LMSMNIAPRL 1147


>gi|324120646|dbj|BAJ78714.1| RNA polymerase II second largest subunit [Gynaikothrips ficorum]
          Length = 1150

 Score =  624 bits (1609), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 413/1206 (34%), Positives = 621/1206 (51%), Gaps = 122/1206 (10%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPSKKGEGEWRYA 84
            C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       + + E   RY 
Sbjct: 1    CWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTTGEVETPPRYL 60

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKF 144
             ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +          T    
Sbjct: 61   -LKFEQIYLSKPTHWEKDGAPSA-MMPNEARLRNLTYSAPLYVDI----------TKTII 108

Query: 145  KTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFII 198
            + G +Q +       +     IG+IP+M++S  C + G+      E  +C  D GGYFII
Sbjct: 109  REGEDQVVT------QNPKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFII 162

Query: 199  KGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVRLVDMSKF-EDI 250
             G+EKV +AQE++    ++V        AYKSE       + R    + +  M++  + I
Sbjct: 163  NGSEKVLIAQEKMATNTVYVFAMKDGKFAYKSEIRSCLEHSSRPTSTLWVNMMARGGQSI 222

Query: 251  KG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHD 306
            K    G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  ++ ++  S+ +
Sbjct: 223  KKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDE 282

Query: 307  A-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEECMNTYLFPSLH 352
            A      N    F   R A         +KY  ++++    P    ++ C          
Sbjct: 283  AFVIQEQNVALNFIGARGARPGVTKEKRIKYAKEILQKEMLPHVGVSDFC---------- 332

Query: 353  GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMA 412
               +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL    +    +  K + 
Sbjct: 333  -ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRALFKNLMKEVR 391

Query: 413  KALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANP 472
               Q+ +   +    +E  +   I+T+GL  + +TG W    K     +G+   L R   
Sbjct: 392  MYAQKFIDRGKDFN-LELAIKTKIITDGLRYSLATGNWGDQKKAHMARAGVSQVLNRLTF 450

Query: 473  LQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST- 531
              TL  LRR    +   GK+   R  H + WG +C   TP+G   GLVKNL +   +S  
Sbjct: 451  ASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGAAVGLVKNLALMAYISVG 510

Query: 532  SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKE 591
            S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    ++ LR+ RR+ +
Sbjct: 511  SQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMD 570

Query: 592  L-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKSLEGKNYTFQA 641
            +  ++V + RD    E+RI+ DAGRI RPLL+VEN         + ++K  +  NY +Q 
Sbjct: 571  IIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGQLLLKKRNIDQLKERDYNNYGWQM 630

Query: 642  LLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFA 701
            L+  G++E + T EEE    A     L +D E      +THCE+  + +LG+   IIPF 
Sbjct: 631  LVASGVVEYIDTLEEETVMIAMSPDDLNQDKEYAYCTTYTHCEIHPAMILGVCASIIPFP 690

Query: 702  NHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYG 761
            +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T   +        
Sbjct: 691  DHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSME-------- 741

Query: 762  HNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYK-AEVDNK 820
                L   EL  G N+IVA+  + GYNQEDS+++N  ++ERG FRS   RSYK AE    
Sbjct: 742  ---YLRFRELPAGINSIVAILCYTGYNQEDSVILNATAVERGFFRSVFYRSYKDAESKRI 798

Query: 821  EMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD-------- 872
              Q ++    +  N   +++ +   D LDDDG    G  +   D+VIGK           
Sbjct: 799  GDQEEQFEKPNRSNCQGMRNAL--YDKLDDDGIIAPGLRVSGDDVVIGKTITLPETDDEL 856

Query: 873  -------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHG 925
                   +  D S  L+++E G+V +V+L+ N +G  F  + +R VR P +GDKF+S HG
Sbjct: 857  EGTTRRHTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHG 916

Query: 926  QKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSG 985
            QKG  G    QE+ PFT +G+ PDI+INPHA PSR T G L+E   GK   +  KG    
Sbjct: 917  QKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGK--VSSNKGEIGD 974

Query: 986  LKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHM 1044
                ATPF    +V  I+  L   G+   G E +Y+G TG  + + +F+GPT+YQRL HM
Sbjct: 975  ----ATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHM 1030

Query: 1045 SEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSY 1104
             +DK+  R  GPV  L RQP+  R R GG++FGEMERDC IAHGAA  L ERLF +SD Y
Sbjct: 1031 VDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVSDPY 1090

Query: 1105 QMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSM 1162
            ++H+C  C    +AN+               C+ C +   I +  +PY AKLL QEL SM
Sbjct: 1091 RIHVCNFCGLIAIANLRNNTFE---------CKGCKNKTQISQVRLPYAAKLLFQELMSM 1141

Query: 1163 GITLKF 1168
             I  + 
Sbjct: 1142 SIAPRL 1147


>gi|326475036|gb|EGD99045.1| DNA-dependent RNA polymerase II RPB140 [Trichophyton tonsurans CBS
            112818]
          Length = 1258

 Score =  624 bits (1609), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 429/1266 (33%), Positives = 638/1266 (50%), Gaps = 158/1266 (12%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGE--WRY 83
            C     +FF   GLVS Q++S++EFI   +Q+  +  G+  ++    PS         R 
Sbjct: 24   CWTVISAFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTVPPSDDEPDPVVLRR 83

Query: 84   ASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT-QKRVTSD 142
              ++FG V L +PS   G+G     M P+ ARL+N+TY+S + + +  ++   ++R+ S+
Sbjct: 84   YELKFGTVMLARPSMTEGDGATSI-MLPQEARLRNLTYASPLYLGISKKIMEGRERLLSE 142

Query: 143  KF-------------KTGREQYI---QKEVLSDETT--NIIIGRIPVMVKSDLCWMKGVE 184
            +              +  R  Y+   +K  + DE    NI IG++P+M+KS  C +K + 
Sbjct: 143  RDEEEEEIEEKGDEERRNRGTYLHWERKPTMEDEAEEENIFIGKMPIMLKSKYCILKDLG 202

Query: 185  K------GDCDFDHGGYFIIKGAEKVFVAQEQIC------LKRLWVSNSMGWTVAYKSEN 232
            +       +C +D GGYF+I G+EKV +AQE+         K+   S +        +  
Sbjct: 203  EQALYNWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAVE 262

Query: 233  KRNRLIVRLVD--MSKFEDIKGG--EKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLI 287
            K +R++ +L    +SK +  KGG    + S   ++ T+IPI ++F ALGV SD++I+N I
Sbjct: 263  KGSRILSQLSIKLLSKGDSAKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDEDILNHI 322

Query: 288  DFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTY- 346
             +   D  +L +L   I +     D       AL ++ K  +G++  P    +E    Y 
Sbjct: 323  CYDRNDTPMLEMLKPCIEEGFVIQDR----EVALDFISK--RGSS--PMSMNQEKRVRYA 374

Query: 347  -------LFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGEL 395
                     P +  ++    +KA FLGYMV  LLQ   GRR  D+RD F  KRL+LAG L
Sbjct: 375  RDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPL 434

Query: 396  LERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFK 455
            L    +V      K + K +QR +   R +  +   + AS LT GL  A +TG W    K
Sbjct: 435  LANLFRVLFMRLTKDLYKYVQRCVETGRQLY-LNIGVKASTLTGGLKYALATGNWGEQKK 493

Query: 456  RTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGE 515
                 +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+
Sbjct: 494  AASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQ 553

Query: 516  NCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCK 574
             CGLVKNL +   ++  +  EPI + +    ME L +          KVFV+G W+GV +
Sbjct: 554  ACGLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTKVFVNGVWVGVHR 613

Query: 575  DSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK------ 628
            D    V  ++  RRR  +  +V +  D    E +IF DAGR+ RPL VV+N  K      
Sbjct: 614  DPAHLVGTVQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSENSGS 673

Query: 629  -------IKSLEG---------------KNYTFQALLDHGIIELVGTEEEEDCCTAW--- 663
                   I  LE                +++ +  L+  G+IE V  EEEE         
Sbjct: 674  LVLVKEHIHKLEADKELPPDLDPEERRERHFGWDGLVKSGVIEYVDAEEEETIMIVMTPE 733

Query: 664  ----------GIKYLLKDIEDK----------KPIKFTHCELDMSFLLGLSCGIIPFANH 703
                      G     +D  D+          K   +THCE+  S +LG+   IIPF +H
Sbjct: 734  DLEASKQYQAGYGMPEEDTTDRNRRVKSNLSQKAHTWTHCEIHPSMILGICASIIPFPDH 793

Query: 704  DHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHN 763
            + + R  YQS     QA+G   TN   R++T+++ L+YPQ+PL  T   +          
Sbjct: 794  NQSPRNTYQS-AMGKQAMGVFLTNFEQRMETMANILYYPQKPLATTRSME---------- 842

Query: 764  HILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQ 823
              L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y        + 
Sbjct: 843  -FLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLT 901

Query: 824  VKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD----------- 872
            V  R    M +   ++ K G  D +DDDG    G  +   DI+IGK +            
Sbjct: 902  VVERFEKPMRS-DTLRMKHGTYDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEAEELGQR 960

Query: 873  ----SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKG 928
                +  D S  L+ TE G+V +V++S+++D   F  V +R  + P +GDKF+S HGQKG
Sbjct: 961  TKQHTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKG 1020

Query: 929  VLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKR 988
             +G     E+ PFT +GI PD++INPHA PSR T   L+E  L K          S L+ 
Sbjct: 1021 TIGITYRHEDMPFTREGITPDLIINPHAIPSRMTIAHLIECQLSK---------VSSLRG 1071

Query: 989  Y---ATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMS 1045
            Y   ATPF   +VD+++  L   G+   G E +Y+G TG  + + +F+GPT+YQRL HM 
Sbjct: 1072 YEGDATPFTDVTVDSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMV 1131

Query: 1046 EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQ 1105
            +DK+  R  GP   LTRQPV  R R GG++FGEMERDC+IAHGA++ L ERLF +SD ++
Sbjct: 1132 DDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASSFLKERLFDVSDPFR 1191

Query: 1106 MHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
            +HIC  C  +   I +V  G  +     CR C + + I + ++PY AKLL QEL SM I 
Sbjct: 1192 VHICDIC-GLMTPIAKVKKGDFE-----CRACRNKNKISQVHIPYAAKLLFQELASMNIA 1245

Query: 1166 LKFDTE 1171
             +  T+
Sbjct: 1246 ARMYTK 1251


>gi|324120670|dbj|BAJ78726.1| RNA polymerase II second largest subunit [Eretes sticticus]
          Length = 1174

 Score =  624 bits (1608), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 419/1229 (34%), Positives = 630/1229 (51%), Gaps = 148/1229 (12%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPS 74
            ++  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S
Sbjct: 15   EISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTS 74

Query: 75   KKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVY 134
             + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +     
Sbjct: 75   GEIENPPRYL-LKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLTYSAPLYVDI----- 127

Query: 135  TQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDC 188
                 T    K G      ++ +  +     IG+IP+M++S  C + G+      E  +C
Sbjct: 128  -----TKTIVKDG------EDPIETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNEC 176

Query: 189  DFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVRL 241
              D GGYFII G+EKV +AQE++    ++V        AYK+E       + R    + +
Sbjct: 177  PLDPGGYFIINGSEKVLIAQEKMATNTVYVFAMKDGKYAYKAEIRSCLEHSSRPTSTLWV 236

Query: 242  VDMSK----FEDIKGGEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
              M++     +    G++++++  ++  EIPI I+F ALG  +D++I+  I +  ED  +
Sbjct: 237  NMMARGGQAIKKAAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFEDPEM 296

Query: 297  LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
            + ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C
Sbjct: 297  MEMVKPSLDEAFVIQEQNVALNFIGARGAKPGVTKEKRIKYAREILQKEMLPHVGVSDFC 356

Query: 343  MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                         +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL      
Sbjct: 357  -----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLL------ 399

Query: 403  HIAHARKRMAKALQRD--LYGDRTV-RPIEYYLDASI----LTNGLSRAFSTGAWSHPFK 455
              A   + + K L ++  +Y  + + +  ++ LD +I    +T+GL  + +TG W    K
Sbjct: 400  --AFLFRGLFKNLMKEVRMYAQKFIDKGKDFNLDLAIKTKMITDGLRYSLATGNWGDQKK 457

Query: 456  RTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGE 515
              +  +G+   L R     TL  LRR    +   GK+   R  H + WG IC   TP+G 
Sbjct: 458  AHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 517

Query: 516  NCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCK 574
              GLVKNL +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +
Sbjct: 518  AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 577

Query: 575  DSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN-------- 625
            D    ++ LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VEN        
Sbjct: 578  DPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGNLLLKKR 637

Query: 626  -MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCE 684
             +  +K  E  NY +Q L+  G++E + T EEE    A     L ++ E      +THCE
Sbjct: 638  HIDMLKEREYNNYGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQEKEYAYCTTYTHCE 697

Query: 685  LDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQR 744
            +  + +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +
Sbjct: 698  IHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHK 756

Query: 745  PLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGM 804
            PL  T   +            L   EL  G N+IVA+  + GYNQEDS+++N +++ERG 
Sbjct: 757  PLVTTRSME-----------YLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGF 805

Query: 805  FRSEHIRSYK----AEVDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIG 857
            FRS   RSYK      + ++E Q +   R++   M N           D LDDDG    G
Sbjct: 806  FRSVFYRSYKDAESKRLGDQEEQFEKPTRQTCQGMRN--------ALYDKLDDDGIISPG 857

Query: 858  ANLQSGDIVIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKN 902
              +   D+VIGK                  +  D S  L+++E G+V +V+L+ N +G  
Sbjct: 858  IRVSGDDVVIGKTITLPENDDELDGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYK 917

Query: 903  FSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQT 962
            F  + +R VR P +GDKF+S HGQKG  G    QE+ PFT +G+ PDI+INPHA PSR T
Sbjct: 918  FCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMT 977

Query: 963  PGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDG 1021
             G L+E   GK   +  KG        ATPF    +V  I+  L   G+   G E +Y+G
Sbjct: 978  IGHLIECIQGK--VSANKGEIGD----ATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNG 1031

Query: 1022 RTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMER 1081
             TG  + + IF+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMER
Sbjct: 1032 HTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMER 1091

Query: 1082 DCLIAHGAAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDS 1139
            DC IAHGAA  L ERLF +SD Y++H+C  C    +AN+               C+ C +
Sbjct: 1092 DCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---------CKGCKN 1142

Query: 1140 GDDIVKANVPYGAKLLCQELFSMGITLKF 1168
               I +  +PY AKLL QEL SM I  + 
Sbjct: 1143 KTQISQVRLPYAAKLLFQELMSMNIAPRL 1171


>gi|156372267|ref|XP_001628960.1| predicted protein [Nematostella vectensis]
 gi|156215949|gb|EDO36897.1| predicted protein [Nematostella vectensis]
          Length = 1182

 Score =  624 bits (1608), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 413/1231 (33%), Positives = 629/1231 (51%), Gaps = 131/1231 (10%)

Query: 2    DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDS 61
            D DD+         D+  +  +  C     S+F+E GLV  Q++S++EFI+  +Q+  + 
Sbjct: 6    DHDDDAGYGEDEGEDITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 65

Query: 62   FGETIVEP-GYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
              E  ++      +   E   R+  ++F Q+ L KP+ +  +G     M P  ARL+N+T
Sbjct: 66   SPEIDLQAESQHMTSDTEIPARFV-LKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLT 123

Query: 121  YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
            YS+   V +          T  + K   E  +         + + IG+IP+M++S  C +
Sbjct: 124  YSAPFYVDI----------TKTRIKDNEEPQVTTH------SKMFIGKIPIMLRSTYCLL 167

Query: 181  KGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE--- 231
             G+      E  +C  D GGYFII G+EKV +AQE++    ++V +      +Y +E   
Sbjct: 168  NGLLDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSKKDSKYSYTAEIRS 227

Query: 232  ----NKRNRLIVRLVDMSKFEDIKGGEK-------VLSVYFLSTEIPIWILFFALGVSSD 280
                + R    + +  ++K     GG +       V S+ ++  EIPI I+F ALG  +D
Sbjct: 228  CLEHSSRPTSTMWVSMLAKGS--SGGRRSAIGQRIVGSLPYIKQEIPIMIVFRALGFVAD 285

Query: 281  KEIVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDK 326
            ++I+  I +  ED  ++ ++  S+ +A      N    F   R A         +KY  +
Sbjct: 286  RDILEHIIYDFEDQEMMEMVKPSLDEAFVIQEQNVALNFIGSRGARPGVTKERRIKYAKE 345

Query: 327  LIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRN 386
            +++    P    ++ C             +KA FLGYMV  LL A  GRR+ D+RD + N
Sbjct: 346  ILQKEMLPHVGVSDFC-----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGN 394

Query: 387  KRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFS 446
            KRL+LAG LL    +    +  K +    Q+ +   +    IE  L   ++T+GL  + +
Sbjct: 395  KRLDLAGPLLAFLFRGLFRNLMKEVRMYAQKFIDRGKDFN-IELALKPKVITDGLRYSLA 453

Query: 447  TGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKI 506
            TG W    K  +  +G+   L R     TL  LRR    +   GK+   R  H +HWG I
Sbjct: 454  TGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGREGKLAKPRQLHNTHWGMI 513

Query: 507  CFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFV 565
            C   TP+G   GLVKNL +   +S  S   PI E +    ME L +    ++    K+FV
Sbjct: 514  CPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFMEEWTMENLEEITPSAINTSTKIFV 573

Query: 566  DGDWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVE 624
            +G W+G+ +D    +S LR+ RRR ++  ++V + RD  + E+RI+ DAGRI RPLL+VE
Sbjct: 574  NGCWVGIHRDPDQLMSTLRKLRRRMDIIVSEVSMVRDFREREIRIYSDAGRICRPLLIVE 633

Query: 625  N---------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDK 675
            N         + ++K  E   Y++Q L+ +GI+E +   EEE    A     L++  +  
Sbjct: 634  NQKLLLKKNHIDQLKEREYNEYSWQELVANGIVEYIDVNEEETVMVAMTPDELVEKGQAY 693

Query: 676  KPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTL 735
                +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL
Sbjct: 694  CST-YTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNYHVRMDTL 751

Query: 736  SHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVM 795
            +H L+YPQ+PL  T   +            L   EL  G NAIVA+  + GYNQEDS++M
Sbjct: 752  AHVLYYPQKPLVTTRSME-----------YLRFRELPAGINAIVAIASYTGYNQEDSVIM 800

Query: 796  NRASLERGMFRSEHIRSYKAEVDNKEM---QVKRRSSDDMVNFGKIQSKIGRVDSLDDDG 852
            N ++++RG++RS   RSY+ +   K +   +   + + D V   +  S     D LD+DG
Sbjct: 801  NASAIDRGLYRSVFYRSYRDQESKKGLDQEETFEKPTRDAVQGMRNAS----YDKLDEDG 856

Query: 853  FPFIGANLQSGDIVIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSN 897
                G  +   D+++GK                  S  D S  L+ +E G+V +V+++ N
Sbjct: 857  LIAPGIRVSGDDVIVGKTVTLPDNDDELEGTARKYSKKDASTFLRPSETGIVDQVMVTIN 916

Query: 898  DDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAF 957
             +G  F+ + +R VR P +GDKF+S HGQKG  G    QE+ PFT +G+ PD++INPHA 
Sbjct: 917  QEGFKFTKIKVRSVRVPQIGDKFASRHGQKGTCGITYRQEDMPFTCEGLSPDVIINPHAI 976

Query: 958  PSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTE 1016
            PSR T G L+E   GK   +  KG        ATPF    +V  I++ L+  G+   G E
Sbjct: 977  PSRMTIGHLIECLQGK--VSANKGEIGD----ATPFNDAVNVQKISQLLNDYGYHLRGNE 1030

Query: 1017 RLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKF 1076
             LY G TG  + + +F+GPT+YQRL HM +DK+  R  GP+  LTRQP+  R R GG++F
Sbjct: 1031 VLYSGFTGRKLNTQVFLGPTYYQRLKHMVDDKIHSRARGPLQILTRQPMEGRSRDGGLRF 1090

Query: 1077 GEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYC 1134
            GEMERDC+IAHG+A  L+ERLF +SD Y  H+C  C    +AN+               C
Sbjct: 1091 GEMERDCMIAHGSAQFLNERLFEVSDPYSCHVCNLCGLIAIANLRNNTFE---------C 1141

Query: 1135 RICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
            R C +   + +  +PY AKLL QEL SM I 
Sbjct: 1142 RGCKNKTQVSRIRMPYAAKLLFQELMSMSIA 1172


>gi|324120644|dbj|BAJ78713.1| RNA polymerase II second largest subunit [Thrips palmi]
          Length = 1150

 Score =  624 bits (1608), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 414/1209 (34%), Positives = 625/1209 (51%), Gaps = 128/1209 (10%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPSKKGEGEWRYA 84
            C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S + E   RY 
Sbjct: 1    CWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIETPPRYL 60

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKF 144
             ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +          T    
Sbjct: 61   -LKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLTYSAPLYVDI----------TKTIV 108

Query: 145  KTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFII 198
            K G      +E +  +     IG+IP+M++S  C + G+      E  +C  D GGYFII
Sbjct: 109  KEG------EEPIETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFII 162

Query: 199  KGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVRLVDMSKF-EDI 250
             G+EKV +AQE++    ++V +      AYK E       + R    + +  M++  + I
Sbjct: 163  NGSEKVLIAQEKMATNTVYVFSMKDGKFAYKCEIRSCLEHSSRPTSTLWVNMMARGGQSI 222

Query: 251  KG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHD 306
            K    G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  ++ ++  S+ +
Sbjct: 223  KKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDE 282

Query: 307  A-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEECMNTYLFPSLH 352
            A      N    F   R A         +KY  ++++    P    ++ C          
Sbjct: 283  AFVIQEQNVALNFIGARGARPGVTKEKRIKYAKEILQKEMLPHVGVSDFC---------- 332

Query: 353  GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMA 412
               +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL    +    +  K + 
Sbjct: 333  -ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRALFKNLMKEVR 391

Query: 413  KALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANP 472
               Q+ +   +    +E  +   I+T+GL  + +TG W    K     +G+   L R   
Sbjct: 392  MYAQKFIDRGKDFN-LELAIKTKIITDGLRYSLATGNWGDQKKAHLARAGVSQVLNRLTF 450

Query: 473  LQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST- 531
              TL  LRR    +   GK+   R  H + WG +C   TP+G   GLVKNL +   +S  
Sbjct: 451  ASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGAAVGLVKNLALMAYISVG 510

Query: 532  SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKE 591
            S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    ++ LR+ RR+ +
Sbjct: 511  SQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMD 570

Query: 592  L-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKSLEGKNYTFQA 641
            +  ++V + RD    E+RI+ DAGRI RPLL+VEN         + ++K  +  NY +Q 
Sbjct: 571  IIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGQLLLKKRNIDQLKERDYNNYGWQM 630

Query: 642  LLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFA 701
            L+  G++E + T EEE    A     L +D E      +THCE+  + +LG+   IIPF 
Sbjct: 631  LVASGVVEYIDTLEEETVMIAMSPDDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFP 690

Query: 702  NHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYG 761
            +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T   +        
Sbjct: 691  DHNQSPRNTYQS-AMGKQAMGVYITNYHVRMDTLAHVLYYPHKPLVTTRSME-------- 741

Query: 762  HNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYK----AEV 817
                L   EL  G N+IVA+  + GYNQEDS+++N  ++ERG FRS   RSYK      +
Sbjct: 742  ---YLRFRELPAGINSIVAILCYTGYNQEDSVILNATAVERGFFRSVFYRSYKDAESKRI 798

Query: 818  DNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD----- 872
             ++E Q ++ + +   N   +++ I   D LDDDG    G  +   D+VIGK        
Sbjct: 799  GDQEEQFEKPNRN---NCQGMRNAI--YDKLDDDGIIAPGLRVSGDDVVIGKTITLPETD 853

Query: 873  ----------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSS 922
                      +  D S  L+++E G+V +V+L+ N +G  F  + +R VR P +GDKF+S
Sbjct: 854  DDLDGTTRRHTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFAS 913

Query: 923  MHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGI 982
             HGQKG  G    QE+ PFT +G+ PDI+INPHA PSR T G L+E   GK   +  KG 
Sbjct: 914  RHGQKGTCGVQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGK--VSSNKGE 971

Query: 983  CSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRL 1041
                   ATPF    +V  I++ L   G+   G E +Y+G TG  + + +F+GPT+YQRL
Sbjct: 972  IGD----ATPFNDAVNVQKISQLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQRL 1027

Query: 1042 IHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLS 1101
             HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC IAHGAA  L ERLF +S
Sbjct: 1028 KHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLFEVS 1087

Query: 1102 DSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQEL 1159
            D Y++H+C  C    +AN+               C+ C +   I +  +PY AKLL QEL
Sbjct: 1088 DPYRIHVCNFCGLIAIANLRNNTFE---------CKGCKNKTQISQVRLPYAAKLLFQEL 1138

Query: 1160 FSMGITLKF 1168
             SM I  + 
Sbjct: 1139 MSMNIAPRL 1147


>gi|324120640|dbj|BAJ78711.1| RNA polymerase II second largest subunit [Blattella nipponica]
          Length = 1175

 Score =  624 bits (1608), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 420/1236 (33%), Positives = 633/1236 (51%), Gaps = 135/1236 (10%)

Query: 2    DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-D 60
            D+D++ + +  +  ++  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   D
Sbjct: 3    DADEDQYEEDDAE-EISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 61   SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
            S    +       S + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+T
Sbjct: 62   SPQIDLQAEAQHTSGEIENPPRYL-LKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLT 119

Query: 121  YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
            YS+ + V +          T    K G      ++ +  +     IG+IP+M++S  C +
Sbjct: 120  YSAPLYVDI----------TKTIVKDG------EDPIETQHQKTFIGKIPIMLRSTYCLL 163

Query: 181  KGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE--- 231
             G+      E  +C  D GGYFII G+EKV +AQE++    ++V +      AYK+E   
Sbjct: 164  SGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKFAYKAEIRS 223

Query: 232  ----NKRNRLIVRLVDMSKF-EDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKE 282
                + R    + +  M++  + IK    G++++++  ++  EIPI I+F ALG  +D++
Sbjct: 224  CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283

Query: 283  IVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLI 328
            I+  I +  +D  ++ ++  S+ +A      N    F   R A         +KY  +++
Sbjct: 284  ILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKDRRIKYAKEIL 343

Query: 329  KGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKR 388
            +    P    ++ C             +KA FLGYMV  LL A  GRR+ D+RD + NKR
Sbjct: 344  QKEMLPHVGVSDFC-----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKR 392

Query: 389  LELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTG 448
            L+LAG LL    +    +  K +    Q+ +   +    +E  +   I+T+GL  + +TG
Sbjct: 393  LDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFN-LELAIKTKIITDGLRYSLATG 451

Query: 449  AWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICF 508
             W    K     +G+   L R     TL  LRR    +   GK+   R  H + WG IC 
Sbjct: 452  NWGDQKKAHLARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICP 511

Query: 509  LSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDG 567
              TP+G   GLVKNL +   +S  S   PI E L    ME L + A  ++    K+FV+G
Sbjct: 512  AETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNG 571

Query: 568  DWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVE-- 624
             W+G+ +D    ++ LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VE  
Sbjct: 572  CWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVEGG 631

Query: 625  -------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKP 677
                   ++  +K  E  NY +Q L+  G++E + T EEE    A   + L  D E    
Sbjct: 632  TLLLKKRHVDMLKEKEYNNYGWQVLVASGVVEYIDTLEEETVMIAMSPEDLRVDKEYAYC 691

Query: 678  IKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSH 737
              +THCE+  + +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H
Sbjct: 692  QTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAH 750

Query: 738  QLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNR 797
             L+YP +PL  T   +            L   EL  G N+IVA+  + GYNQEDS++MN 
Sbjct: 751  VLYYPHKPLVTTRSME-----------YLRFRELPAGINSIVAILCYTGYNQEDSVIMNA 799

Query: 798  ASLERGMFRSEHIRSYK----AEVDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDD 850
            +++ERG FRS   RSYK      + ++E Q +   R++   M N           D LDD
Sbjct: 800  SAVERGFFRSVFFRSYKDAESKRIGDQEEQFEKPTRQTCQGMRN--------ALYDKLDD 851

Query: 851  DGFPFIGANLQSGDIVIGKYAD---------------SGADHSIKLKHTERGMVQKVVLS 895
            DG    G  +   D+VIGK                  +  D S  L+++E G+V +V+L+
Sbjct: 852  DGIISPGIRVSGDDVVIGKTITLPDNDDELEGTTKRFTKRDASTFLRNSETGIVDQVMLT 911

Query: 896  SNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPH 955
             N +G  F  + +R VR P +GDKF+S HGQKG  G    QE+ PFT +G+ PDI+INPH
Sbjct: 912  LNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPH 971

Query: 956  AFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWG 1014
            A PSR T G L+E   GK   +  KG        ATPF    +V  I+  L   G+   G
Sbjct: 972  AIPSRMTIGHLIECLQGK--VSSNKGEIGD----ATPFNDAVNVQKISTLLQEYGYQLRG 1025

Query: 1015 TERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGI 1074
             E +Y+G TG  + + IF+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG+
Sbjct: 1026 NEVMYNGHTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGL 1085

Query: 1075 KFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGP 1132
            +FGEMERDC IAHGAA  L ERLF +SD Y +H+C  C    +AN+              
Sbjct: 1086 RFGEMERDCQIAHGAAQFLRERLFEVSDPYAIHVCNFCGLIAIANLRNNTFE-------- 1137

Query: 1133 YCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
             C+ C +   I +  +PY AKLL QEL SM I  + 
Sbjct: 1138 -CKGCKNKTQISQVRLPYAAKLLFQELMSMSIAPRL 1172


>gi|324120616|dbj|BAJ78699.1| RNA polymerase II second largest subunit [Phraortes illepidus]
          Length = 1150

 Score =  624 bits (1608), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 417/1219 (34%), Positives = 625/1219 (51%), Gaps = 148/1219 (12%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPSKKGEGEWRYA 84
            C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S + E   RY 
Sbjct: 1    CWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIENPPRYL 60

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKF 144
             ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +          T    
Sbjct: 61   -LKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLTYSAPLYVDI----------TKTII 108

Query: 145  KTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFII 198
            K G       E +  +     IG+IP+M++S  C + G+      E  +C  D GGYFII
Sbjct: 109  KDG------DEPMESQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFII 162

Query: 199  KGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVRLVDMSKF-EDI 250
             G+EKV +AQE++    ++V +      AYK+E       + R    + +  M++  + I
Sbjct: 163  NGSEKVLIAQEKMATNTVYVFSMKDGKYAYKAEIRSCLEHSSRPTSTLWVNMMARGGQSI 222

Query: 251  KG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHD 306
            K    G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  ++ ++  S+ +
Sbjct: 223  KKSAIGQRIIAIMPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDQEMMEMVKPSLDE 282

Query: 307  A-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEECMNTYLFPSLH 352
            A      N    F   R A         +KY  ++++    P    ++ C          
Sbjct: 283  AFVIQEQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFC---------- 332

Query: 353  GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMA 412
               +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL        A   + + 
Sbjct: 333  -ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLL--------AFLFRGLF 383

Query: 413  KALQRD--LYGDRTVR-----PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVA 465
            K L ++  +Y  + +       +E  +   I+T+GL  + +TG W    K  +  +G+  
Sbjct: 384  KTLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQ 443

Query: 466  NLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV 525
             L R     TL  LRR    +   GK+   R  H + WG IC   TP+G   GLVKNL +
Sbjct: 444  VLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLAL 503

Query: 526  TGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELR 584
               +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    ++ LR
Sbjct: 504  MAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMTTLR 563

Query: 585  RKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKSLEG 634
            + RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VEN         +  +K  E 
Sbjct: 564  KLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGKLLLKKRHIDMLKDREY 623

Query: 635  KNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLS 694
             NY +Q L+  G++E + T EEE    A   + +  + E      +THCE+  + +LG+ 
Sbjct: 624  NNYGWQVLVASGVVEYIDTLEEETVMIAMMTEDMKHEKEYAYCTTYTHCEIHPAMILGVC 683

Query: 695  CGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDC 754
              IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T   + 
Sbjct: 684  ASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNYHVRMDTLAHVLYYPHKPLVTTRSME- 741

Query: 755  LGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYK 814
                       L   EL  G N++VA+  + GYNQEDS++MN +++ERG FRS   RSYK
Sbjct: 742  ----------YLRFRELPAGINSVVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRSYK 791

Query: 815  ----AEVDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVI 867
                  + ++E Q +   R++   M N           D LDDDG    G  +   D+VI
Sbjct: 792  DAESKRIGDQEEQFEKPTRQTCQGMRN--------ALYDKLDDDGIIAPGIRVSGDDVVI 843

Query: 868  GKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVR 912
            GK                  +  D S  L+++E G+V +V+L+ N +G  F  + +R VR
Sbjct: 844  GKTITLPDNEDELEGTTKRFTKRDASTFLRNSETGIVDQVMLTLNAEGYKFCKIRVRSVR 903

Query: 913  SPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALG 972
             P +GDKF+S HGQKG  G    QE+ PFT +G+ PDI+INPHA PSR T G L+E   G
Sbjct: 904  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQG 963

Query: 973  KGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLI 1031
            K   +  KG        ATPF    +V  I+  L   G+   G E +Y+G TG  + + I
Sbjct: 964  K--VSSNKGEIGD----ATPFNDAVNVQKISALLQEYGYQLRGNEVMYNGHTGRKINAQI 1017

Query: 1032 FIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAA 1091
            F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC IAHGAA 
Sbjct: 1018 FLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRSRDGGLRFGEMERDCQIAHGAAQ 1077

Query: 1092 NLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVP 1149
             L ERLF +SD Y++H+C  C    +AN+               C+ C +   I +  +P
Sbjct: 1078 FLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---------CKGCKNKTQISQVRLP 1128

Query: 1150 YGAKLLCQELFSMGITLKF 1168
            Y AKLL QEL +M I  + 
Sbjct: 1129 YAAKLLFQELMAMNIAPRL 1147


>gi|453086391|gb|EMF14433.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Mycosphaerella populorum SO2202]
          Length = 1260

 Score =  623 bits (1607), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 422/1274 (33%), Positives = 631/1274 (49%), Gaps = 177/1274 (13%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDS-----FGETIVEPGYDPSKKGEGE 80
            C     SFF+  GLVS Q++S++EF    +Q+  D        + +   G D +     +
Sbjct: 29   CWTVIHSFFSTKGLVSQQLDSFDEFASTTMQEIVDETPAIVIDQNVASDGDDETNMPIVK 88

Query: 81   WRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKR-- 138
             RY  +  G +T+ + +   G+G     M P  ARL+N+TYSS M + ++ ++   +   
Sbjct: 89   RRYI-IELGMLTISQAAMTEGDGSTRQ-MHPHEARLRNLTYSSPMFINMRKKMMLARERS 146

Query: 139  ----VTSDKFK----TGREQYIQKEVLSDETTN-------IIIGRIPVMVKSDLCWMKGV 183
                ++ D        G + Y  + V  D+  N       + IG++P+M+KS +C ++  
Sbjct: 147  IGGHLSEDGTHWIDPVGWDGYTTETVWEDDPDNPMEAKDQVFIGKLPIMLKSKICALRNR 206

Query: 184  EKGD------CDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-----N 232
             + +      C FD GGYFII G+EKV +AQE+     + V    G      +E      
Sbjct: 207  SEQELYAFQECPFDQGGYFIINGSEKVLIAQERSAANIVQVFKKKGTNTPVVAELRSAIE 266

Query: 233  KRNRLI----VRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLID 288
            K  RLI    +RL + S    + G    ++V +L  +IPI I+F ALG+ SD++I+N I 
Sbjct: 267  KGTRLISSMGIRLYNQSAQSAVSGKTIRVTVPYLKVDIPIGIVFRALGIVSDEDILNHI- 325

Query: 289  FTCEDCSILNILFAS------IHDADNKCDEF-RKGRNA------LKYVDKLIKGTTFPP 335
                D  +L +L         I D D   D   R+G+        ++Y  ++++   F P
Sbjct: 326  VDKSDTQMLEMLKPCLEEAFVIQDKDVALDYIGRRGQQQGTKDKRIRYAKEVMQ-KEFLP 384

Query: 336  GESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGEL 395
              S EE   T          +KA FLGYMV  +LQ   GR   D+RD F  KRL+LAG L
Sbjct: 385  HISQEEGSET----------KKAFFLGYMVNRMLQCALGRTDEDDRDHFGKKRLDLAGPL 434

Query: 396  LERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFK 455
            + +  ++      K M + L R +   R    I   +  +I+T+GL    +TG W    K
Sbjct: 435  MAQVFRLKFQQLVKEMKQYLHRCVETGREFN-ITLAVKTNIITSGLRYCLATGNWGDQKK 493

Query: 456  RTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGE 515
             +   +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+
Sbjct: 494  ASSSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQ 553

Query: 516  NCGLVKNLGVTGLVSTSIL-EPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCK 574
             CGLVKNL +   V+      P+ + +   GM+ L +          K+ ++G WIGV  
Sbjct: 554  ACGLVKNLSLMCYVTVGTPGTPLIDFMRQRGMDLLEEYDPVMNPKATKIMLNGTWIGVHH 613

Query: 575  DSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN--------- 625
            +       LR  RR+  +  +V I RD    E+R+F DAGR+ RPL VV+N         
Sbjct: 614  NPGHLAEVLRTLRRKDTISFEVTIIRDVRDREIRVFTDAGRVCRPLFVVDNDPKSSNRGH 673

Query: 626  -------MGKIKS-------LEGKN--------YTFQALLDHGIIELVGTEEEEDCCTAW 663
                   +GK++        LEG          Y +  L   G++E +  EEEE      
Sbjct: 674  LVLNQEHIGKLQQDQEILAGLEGVTEEERESSIYGWTGLTREGVVEYLDAEEEETAM--- 730

Query: 664  GIKYLLKDIEDKKPIK--------------------------FTHCELDMSFLLGLSCGI 697
             I    +D+E+ + ++                          +THCE+  + +LG+   I
Sbjct: 731  -ISMTPEDLEEHRNMRQGIQWDDARDDPHRRIKPAPNASVRTWTHCEIHPAMILGICASI 789

Query: 698  IPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGK 757
            IPF +H+ + R  YQS     QA+G   TN ++R+DT+++ L+YPQ+PL  T   +    
Sbjct: 790  IPFPDHNQSPRNTYQS-AMGKQAMGVTLTNYNVRMDTMANVLYYPQKPLATTRSME---- 844

Query: 758  PGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEV 817
                    L   +L  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y  + 
Sbjct: 845  -------FLRFRDLPAGQNAIVAIATYSGYNQEDSVIMNQSSIDRGLFRSLFFRAYMDQE 897

Query: 818  DNKEMQV-----KRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD 872
                M V     K   SD M      + K G  D LDDDG    GA +   DI+IGK A 
Sbjct: 898  KRVGMSVVEAFEKPTRSDTM------RMKQGSYDKLDDDGIVAPGARVSGDDIIIGKTAP 951

Query: 873  SGADH---------------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLG 917
               D                S  L+ TE G++ +V+L++N +G  F  V  R  + P +G
Sbjct: 952  MPPDAEELGQRTKLHVKRDVSTPLRSTENGLIDQVLLTTNTEGLRFVKVRTRVTKVPQIG 1011

Query: 918  DKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAA 977
            DKF+S HGQKG +G    QE+ PF+  G+ PDI+INPHA PSR T   L+E  L K    
Sbjct: 1012 DKFASRHGQKGTIGITYRQEDMPFSADGLTPDIIINPHAIPSRMTIAHLIECLLSK---- 1067

Query: 978  LGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTF 1037
               G   G +  ATPF   +V ++++ L  AGF + G E +Y+G TG+ + + +F+GPT+
Sbjct: 1068 --VGALQGQEGDATPFTDVTVTSVSQILAAAGFQQRGFEVMYNGHTGKKLNAQVFLGPTY 1125

Query: 1038 YQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERL 1097
            YQRL HM +DK+  R  GP+  LTRQPV  R R GG++FGEMERDC+IAHGA+A L ERL
Sbjct: 1126 YQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERL 1185

Query: 1098 FTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQ 1157
              +SD++++HIC  C  +  +         K +   CR C +   I +  +PY AKLL Q
Sbjct: 1186 LDVSDAFRVHICEICGLMTPI------ASIKKQQFECRPCKNKTKIAQVIIPYAAKLLFQ 1239

Query: 1158 ELFSMGITLKFDTE 1171
            EL +M +  +  T+
Sbjct: 1240 ELAAMNVATRMFTD 1253


>gi|324120606|dbj|BAJ78694.1| RNA polymerase II second largest subunit [Isolepisma japonica]
          Length = 1176

 Score =  623 bits (1607), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 416/1220 (34%), Positives = 626/1220 (51%), Gaps = 130/1220 (10%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPS 74
            ++  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S
Sbjct: 16   EISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTS 75

Query: 75   KKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVY 134
             + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +     
Sbjct: 76   GEIETPPRYL-LKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLTYSAPLYVDI----- 128

Query: 135  TQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDC 188
                 T    K G      ++ +  +     IG+IP+M++S  C + G+      E  +C
Sbjct: 129  -----TKTVIKEG------EDPIETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNEC 177

Query: 189  DFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVRL 241
              D GGYFII G+EKV +AQE++    ++V +      AYK+E       + R    + +
Sbjct: 178  PLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKAEIRSCLEHSSRPTSTLWV 237

Query: 242  VDMSKF-EDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
              M++  + IK    G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  +
Sbjct: 238  NMMARGGQSIKKSAIGQRIVAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 297

Query: 297  LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
            + ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C
Sbjct: 298  MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFC 357

Query: 343  MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                         +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL    + 
Sbjct: 358  -----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 403  HIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISG 462
               +  K +    Q+ +   +    +E  +   I+T+GL  + +TG W    K     +G
Sbjct: 407  LFKNLMKEVRMYAQKFIDRGKDFN-LELAIKTKIITDGLKYSLATGNWGDQKKAHLARAG 465

Query: 463  IVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKN 522
            +   L R     TL  LRR    +   GK+   R  H + WG IC   TP+G   GLVKN
Sbjct: 466  VSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKN 525

Query: 523  LGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVS 581
            L +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    ++
Sbjct: 526  LALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMA 585

Query: 582  ELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKS 631
             LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+V+N         +  +K 
Sbjct: 586  TLRKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRICRPLLIVDNGRLLLKKRHIDMLKE 645

Query: 632  LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLL 691
             E  NY +Q L+  G++E + T EEE    A   + L +D E      +THCE+  + +L
Sbjct: 646  REYNNYGWQVLVASGVVEYIDTLEEETVMIAMSPEDLRQDKEYAYCTTYTHCEIHPAMIL 705

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T  
Sbjct: 706  GVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRS 764

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
             +            L   EL  G N+IVA+  + GYNQEDS++MN +++ERG FRS   R
Sbjct: 765  ME-----------YLRFRELPAGINSIVAIACYTGYNQEDSVIMNASAVERGFFRSVFFR 813

Query: 812  SYK----AEVDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGD 864
            SYK      + ++E Q +   R +   M N           D LDDDG    G  +   D
Sbjct: 814  SYKDAESKRICDQEEQFEKPTRTTCQGMRN--------AIYDKLDDDGIIAPGIRVSGDD 865

Query: 865  IVIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLR 909
            +VIGK                  +  D S  L+++E G+V +V+++ N +G  F  + +R
Sbjct: 866  VVIGKTITLPDNDDELEGTTKRYTKRDASTFLRNSETGIVDQVMITLNSEGYKFCKIRVR 925

Query: 910  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEA 969
             VR P +GDKF+S HGQKG  G    QE+ PFT +G+ PDI+INPHA PSR T G L+E 
Sbjct: 926  SVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIEC 985

Query: 970  ALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVR 1028
              GK   +  KG        ATPF    +V  I+  L   G+   G E +Y+G TG  + 
Sbjct: 986  LQGK--VSSNKGEIGD----ATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKIN 1039

Query: 1029 SLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG 1088
            + IF+GPT+YQRL HM +DK+  R  GP+  L RQP+  R R GG++FGEMERDC IAHG
Sbjct: 1040 AQIFLGPTYYQRLKHMVDDKIHSRARGPLQILVRQPMEGRARDGGLRFGEMERDCQIAHG 1099

Query: 1089 AAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANV 1148
            AA  L ERLF +SD Y++H+C  C  +A      +   R      C+ C +   I +  +
Sbjct: 1100 AAQFLRERLFEVSDPYRIHVCNFCGLIA------IANMRNSTFE-CKGCKNKTQISQVRL 1152

Query: 1149 PYGAKLLCQELFSMGITLKF 1168
            PY AKLL QEL SM I  + 
Sbjct: 1153 PYAAKLLFQELMSMNIAPRL 1172


>gi|242824711|ref|XP_002488312.1| DNA-dependent RNA polymerase II RPB140 [Talaromyces stipitatus ATCC
            10500]
 gi|218713233|gb|EED12658.1| DNA-dependent RNA polymerase II RPB140 [Talaromyces stipitatus ATCC
            10500]
          Length = 1256

 Score =  623 bits (1606), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 417/1256 (33%), Positives = 639/1256 (50%), Gaps = 141/1256 (11%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGE--WRY 83
            C     S+F+  GLVS Q++S++EFI + +Q+  +  G+  ++    P++        R 
Sbjct: 25   CWTVISSYFDTKGLVSQQLDSFDEFISSTMQELVEEQGQVTIDQTITPNEDEIDPVVIRR 84

Query: 84   ASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT-QKRVTSD 142
              +++G + L +PSF   NG     + P  AR +N+TY+S + + VQ ++   ++R  +D
Sbjct: 85   YEIKYGTIMLARPSFSEINGAATL-LLPMEARHRNLTYASPLYLNVQRRLTEGRERKVAD 143

Query: 143  KFKTG-----REQ-----YIQKE-----VLSDETTNIIIGRIPVMVKSDLCWMKGVEK-- 185
            +   G      EQ     Y++ E     +  +E     IGRIP+M+KS  C ++ + +  
Sbjct: 144  RDGEGLGDENEEQKPGGTYLEWEEKPLVISEEEAKGCYIGRIPIMLKSKYCLLRDLSEQS 203

Query: 186  ----GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKRNR 236
                 +C +D GGYFII G+EKV +AQE+     + V      +   +    +S  ++  
Sbjct: 204  LYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAVEKGS 263

Query: 237  LIVRLVDMSKF---EDIKGGEKVL---SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFT 290
             I+  + +  F   +  KGG       S+ ++ T+IPI I+F ALGV SD++I+N I + 
Sbjct: 264  RILSQLSLKLFAKGDSSKGGFGPTIRSSLPYIKTDIPIVIVFRALGVVSDEDILNHICYD 323

Query: 291  CEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES----TEECMNTY 346
              D  +L +L   I +     D       AL ++ K     T    +       E M   
Sbjct: 324  RNDTPMLEMLKPCIEEGFVIQDR----EVALDFISKRGSSQTSMSHDRRVRYAREIMQKE 379

Query: 347  LFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
              P +  ++    +KA FLGYMV  LLQ   GRR  D+RD F  KRL+LAG LL    + 
Sbjct: 380  FLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDVDDRDHFGKKRLDLAGPLLATLFRT 439

Query: 403  HIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISG 462
                  + + + +QR +  +R V  +   L  + LT GL  A +TG W    K     +G
Sbjct: 440  LFTRVTRDLTRYVQRCVETNREVV-LNVGLKPATLTGGLKYALATGNWGEQKKAMSSKAG 498

Query: 463  IVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKN 522
            +   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLVKN
Sbjct: 499  VSQVLSRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKN 558

Query: 523  LGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVS 581
            L +   ++  S  EPI + +    ME L +          KVFV+G W+G+ +D    VS
Sbjct: 559  LALMCSITVGSPSEPIVDFMIQRNMEVLEEFEPLVTPHATKVFVNGVWVGIHRDPAHLVS 618

Query: 582  ELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK------------- 628
             ++  RRR  +  +V + RD    E +IF DAGR+ RPL V++N  +             
Sbjct: 619  TVQSLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVIDNDPRSENCGSLVLNKDH 678

Query: 629  IKSLEG---------------KNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYL----- 668
            I+ LE                + Y ++ L+  G+IE V  EEEE    A   + L     
Sbjct: 679  IRRLEADRELPPDLDPEERREQYYGWEGLVKSGVIEYVDAEEEETIMIAMSPEDLEISKQ 738

Query: 669  -----------------LKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLY 711
                             ++ +  ++   +THCE+  S +LG+   IIPF +H+ + R  Y
Sbjct: 739  LQAGYAMPEDNSDPNKRVRSVLSQRAHIWTHCEIHPSMILGICASIIPFPDHNQSPRNTY 798

Query: 712  QSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPEL 771
            QS     QA+G   TN   R++T+++ L+YPQ+PL  T   +            L   EL
Sbjct: 799  QS-AMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSME-----------FLKFREL 846

Query: 772  YNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDD 831
              GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y        +Q   +    
Sbjct: 847  PAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTEAERKLGLQTIEKFEKP 906

Query: 832  MVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD---------------SGAD 876
            M +   +  + G  D ++DDG    G  +   DI+IGK A                +  D
Sbjct: 907  MRS-DTLGMRKGTYDKIEDDGLVAPGVRVTGEDIIIGKTAPLAPESEELGQRTKAHTKVD 965

Query: 877  HSIKLKHTERGMVQKVVLSS-NDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLES 935
             S  L+ TE G+V +V+L++ ND       V +R  + P +GDKF+S HGQKG +G    
Sbjct: 966  VSTPLRATESGIVDQVLLTTGNDPDLRLVKVRMRTTKIPQIGDKFASRHGQKGTIGITYR 1025

Query: 936  QENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFAT 995
             E+ PFT +G+VPD++INPHA PSR T   L+E  L K +++L      G +  ATPF  
Sbjct: 1026 HEDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLSK-VSSL-----RGFEGDATPFTD 1079

Query: 996  PSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTG 1055
             +VD+++  L   G+   G E +Y+G TG+ +++ +F+GPT+YQRL HM +DK+  R  G
Sbjct: 1080 VTVDSVSRLLREHGYQSRGFEVMYNGHTGKKLKAQVFLGPTYYQRLRHMVDDKIHARARG 1139

Query: 1056 PVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNV 1115
            P   LTRQPV  R R GG++FGEMERDC+IAHGA+A L ERLF +SD +++HIC  C  +
Sbjct: 1140 PTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDC-GL 1198

Query: 1116 ANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
               I ++  G  +     CR+C++   I + ++PY AKLL QEL +M I  +  T+
Sbjct: 1199 MTPIAKLKKGLFE-----CRLCNNKHRISQVHIPYAAKLLFQELAAMNIAARMFTD 1249


>gi|227826389|gb|ACP41919.1| RNA polymerase IV, partial [Heliosperma pusillum]
          Length = 376

 Score =  623 bits (1606), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 298/382 (78%), Positives = 336/382 (87%), Gaps = 8/382 (2%)

Query: 628  KIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDM 687
            KIK L+G  ++FQ LLD GI+EL+G EEEEDC TAW IKYL    + K   K+THCELD+
Sbjct: 1    KIKLLKGDEFSFQTLLDKGILELIGVEEEEDCRTAWEIKYLFTGEKGKGLEKYTHCELDL 60

Query: 688  SFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLF 747
            SFLLG+SCGIIPFANHDHARRVLYQS+KHS QAIG+ TTNP+IR+DTLSHQ++YPQRPLF
Sbjct: 61   SFLLGVSCGIIPFANHDHARRVLYQSEKHSGQAIGYATTNPNIRIDTLSHQMYYPQRPLF 120

Query: 748  RTMISDCLGKPGY--GHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMF 805
            R++I+D LGK G+  G N ILP+ E +NGQNAI+AVNVHLGYNQEDS+VMNRASLERGMF
Sbjct: 121  RSVIADSLGKAGHPLGRNQILPKAEFFNGQNAILAVNVHLGYNQEDSIVMNRASLERGMF 180

Query: 806  RSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDI 865
            R+EHIRSYKAEVDNK+   KRR  DD V+FGKIQSK+GRVDSLDDDGFP IGANLQSGDI
Sbjct: 181  RTEHIRSYKAEVDNKDSLEKRRKFDDAVSFGKIQSKLGRVDSLDDDGFPHIGANLQSGDI 240

Query: 866  VIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHG 925
            +IG+ ++SG DHSIKLKHTE+GMVQKV+LS+NDDGKNF+VVSLRQVRSPCLGDKFSSMHG
Sbjct: 241  IIGRSSESGTDHSIKLKHTEKGMVQKVLLSANDDGKNFAVVSLRQVRSPCLGDKFSSMHG 300

Query: 926  QKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSG 985
            QKGVLGFLESQENFPFT QGIVPDIVINPHAFPSRQTP QLLEAALGKGIA      C G
Sbjct: 301  QKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPAQLLEAALGKGIA------CGG 354

Query: 986  LKRYATPFATPSVDAITEQLHR 1007
              RYATPF+TPSV++ITEQLHR
Sbjct: 355  TLRYATPFSTPSVESITEQLHR 376


>gi|171677674|ref|XP_001903788.1| hypothetical protein [Podospora anserina S mat+]
 gi|170936905|emb|CAP61564.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1278

 Score =  623 bits (1606), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 433/1270 (34%), Positives = 638/1270 (50%), Gaps = 168/1270 (13%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVE---PGYDPSKKGEGEWR 82
            C     ++F+  GLVS QI+S++EF  + +Q   D + +  ++   PG D  +  +   R
Sbjct: 44   CWDVISAYFDMKGLVSQQIDSFDEFTSSTIQSLVDEYADLTLDHPNPGDDQGR--DIALR 101

Query: 83   YASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQV--------- 133
               + FG V + KP+      G+   + P   R +N+TYS+ M  KV  +          
Sbjct: 102  RYDIHFGNVMISKPTL-TEISGETTSLLPYECRDRNLTYSAPMYCKVSKRARVAINEPVP 160

Query: 134  --------YTQKRVTSDKFKTGREQYIQKEVL-------SDETTNIIIGRIPVMVKSDLC 178
                    +   R T +   T R +  + ++        +D    I +G++PVMVKS +C
Sbjct: 161  LNELDDEQHELMRETGEHPMTIRWEEEESDMPGEGSKGENDRGDLIFLGKLPVMVKSQIC 220

Query: 179  WMKGVEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE 231
             + G +        +C +D GGYFII G+EKV +AQE+     + V     G +V+Y++E
Sbjct: 221  HLYGEDDESLFVLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKPPGGSVSYQAE 280

Query: 232  -----NKRNRLIVRLVDMSKFEDIKGGEK-------VLSVYFLSTEIPIWILFFALGVSS 279
                  K +RLI  L    K       EK        +++ ++  ++ + I+F ALG+ S
Sbjct: 281  IRSALEKGSRLISSL--QMKLHTKASNEKGRLANTVSVTLPYVREDVSLAIVFRALGIVS 338

Query: 280  DKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTT----FPP 335
            D++I+N I +  +D  +L  L   I +A   C + R+   AL ++ K   G         
Sbjct: 339  DEDILNHICYDRKDTQMLEALRPCIEEA--FCIQDRE--IALDFIGKRGNGNMGQNRMNR 394

Query: 336  GESTEECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLEL 391
              + ++ +   + P +  T+    +KA FLGYMV  LLQ   GRR  D+RD F  KRL+L
Sbjct: 395  IRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVNKLLQCALGRRDTDDRDHFGKKRLDL 454

Query: 392  AGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWS 451
            AG LL +  +  +    + +   ++R L  ++    +   + A+ LTN L  + +TG W 
Sbjct: 455  AGPLLAKLFRGVVRRMTQDLMGYMKRCLDTNKHF-TLALGIKANTLTNALKYSLATGNWG 513

Query: 452  HPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLST 511
               K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   T
Sbjct: 514  DQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAET 573

Query: 512  PDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWI 570
            P+G+ CGLVKNL +   VS  +  +PI + +   GM+ L +          KVFV+G W+
Sbjct: 574  PEGQACGLVKNLSLMCYVSVGTPADPIVDFMTARGMDVLEEYEPLRAPNATKVFVNGTWV 633

Query: 571  GVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE------ 624
            GV  D    V+ ++  RR+  +  +V + RD  + E +IF DAGR++RPL  VE      
Sbjct: 634  GVHNDPKQLVTLVQDLRRKNVISFEVSLVRDIREREFKIFSDAGRVMRPLFTVEQEEKGN 693

Query: 625  ----------NMGKIKSLE-----GKNYT----FQALLDHGIIELVGTEEEED---CCTA 662
                      N   I  L+     GK +     +Q LL  G IE +  EEEE    C T 
Sbjct: 694  HGVEKGQLILNKDHIARLQRDKELGKYHPDYWGWQGLLKSGAIEYLDAEEEETTMICMTP 753

Query: 663  WGIKYL-------------------LKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANH 703
              +                      ++   +K    +THCE+  + LLG+   IIPF +H
Sbjct: 754  QDLDDFRMTKLGFHIETTSGQGNNRIRTKVNKTTHMYTHCEIHPAMLLGICASIIPFPDH 813

Query: 704  DHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHN 763
            + + R  YQS     QA+GF  TN S R+DT+++ L+YPQ+PL  T   +          
Sbjct: 814  NQSPRNTYQS-AMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSME---------- 862

Query: 764  HILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSY-----KAEVD 818
              L   EL  GQNAIVA+  + GYNQEDS+VMN++S++RG+FRS   RSY     +  ++
Sbjct: 863  -FLKFRELPAGQNAIVAILCYSGYNQEDSVVMNQSSIDRGIFRSLFFRSYTDCEKRVGIN 921

Query: 819  NKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH- 877
              EM  K    D       ++ K G  D LD DG    G  +   DI+IGK +    D+ 
Sbjct: 922  IVEMFEKPTRGD------TLRLKHGTYDKLDADGIIAPGIRVSGEDIIIGKTSPINPDNA 975

Query: 878  --------------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSM 923
                          S  L+ TE G+V  VVL++N DG  +  V +R  + P +GDKF+S 
Sbjct: 976  ELGQRQQQHVKRDASTPLRSTESGIVDSVVLTTNQDGMRYVKVRVRTTKIPQIGDKFASR 1035

Query: 924  HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGIC 983
            HGQKG +G     E+ PFT +GI PDI+INPHA PSR T   L+E  L K +A L     
Sbjct: 1036 HGQKGTIGLTYRMEDMPFTAEGITPDIIINPHAIPSRMTIAHLVECLLSK-VATL----- 1089

Query: 984  SGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIH 1043
             GL+  ATPF   +VD++++ L   G+   G E LY G TG  +R+  F GPT+YQRL H
Sbjct: 1090 KGLEGDATPFTDVTVDSVSDLLREQGYQSRGFEILYHGHTGRKLRAQCFFGPTYYQRLRH 1149

Query: 1044 MSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDS 1103
            M +DK+  R  GPV  +TRQPV  R R GG++FGEMERDC+IAHGAA+ L ERLF +SD+
Sbjct: 1150 MVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDA 1209

Query: 1104 YQMHICRKC---KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELF 1160
            Y++HIC  C     +AN+ ++            CR C +   I + ++PY AKLL QEL 
Sbjct: 1210 YRVHICEICGLMTPIANLTKQSF---------ECRPCKNKTKIAQVHMPYAAKLLFQELM 1260

Query: 1161 SMGITLKFDT 1170
            SMGI  +  T
Sbjct: 1261 SMGIASRMFT 1270


>gi|315041535|ref|XP_003170144.1| DNA-directed RNA polymerase [Arthroderma gypseum CBS 118893]
 gi|311345178|gb|EFR04381.1| DNA-directed RNA polymerase [Arthroderma gypseum CBS 118893]
          Length = 1258

 Score =  623 bits (1606), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 426/1266 (33%), Positives = 637/1266 (50%), Gaps = 158/1266 (12%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGE--WRY 83
            C     +FF   GLVS Q++S++EFI   +Q+  +  G+  ++    PS         R 
Sbjct: 24   CWTVISAFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTVPPSDDEHDPVVLRR 83

Query: 84   ASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT-QKRVTSD 142
              ++FG V L +PS   G+G     M P+ ARL+N+TY+S + + +  ++   ++R+ S+
Sbjct: 84   YELKFGTVMLARPSMTEGDGATS-IMLPQEARLRNLTYASPLYLGISKKIMEGRERLLSE 142

Query: 143  KF-------------KTGREQYI---QKEVLSDETT--NIIIGRIPVMVKSDLCWMKGVE 184
            +              +  R  Y+   +K  + DE    NI IG++P+M+KS  C +K + 
Sbjct: 143  RDEEEEEIEEKGDEERRNRGTYLHWERKPTMEDEAEEENIFIGKMPIMLKSKYCILKDLG 202

Query: 185  K------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENK 233
            +       +C +D GGYF+I G+EKV +AQE+     + V      +   +    +S  +
Sbjct: 203  EQALYNWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAVE 262

Query: 234  RNRLIVRLVDM---SKFEDIKGG--EKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLI 287
            +   I+  + +   SK +  KGG    + S   ++ T+IPI ++F ALGV SD++I+N I
Sbjct: 263  KGSRILSQLSIKLFSKGDSAKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDEDILNHI 322

Query: 288  DFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTY- 346
             +   D  +L +L   I +     D       AL ++ K  +G++  P    +E    Y 
Sbjct: 323  CYDRNDTPMLEMLKPCIEEGFVIQDR----EVALDFISK--RGSS--PMSMNQEKRVRYA 374

Query: 347  -------LFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGEL 395
                     P +  ++    +KA FLGYMV  LLQ   GRR  D+RD F  KRL+LAG L
Sbjct: 375  RDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPL 434

Query: 396  LERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFK 455
            L    +V      K + K +QR +   R +  +   + AS LT GL  A +TG W    K
Sbjct: 435  LANLFRVLFMRLTKDLYKYVQRCVETGRQLY-LNIGVKASTLTGGLKYALATGNWGEQKK 493

Query: 456  RTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGE 515
                 +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+
Sbjct: 494  AASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQ 553

Query: 516  NCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCK 574
             CGLVKNL +   ++  +  EPI + +    ME L +          KVFV+G W+GV +
Sbjct: 554  ACGLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTKVFVNGVWVGVHR 613

Query: 575  DSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK------ 628
            D    V  ++  RRR  +  +V +  D    E +IF DAGR+ RPL VV+N  K      
Sbjct: 614  DPAHLVGTVQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSENSGS 673

Query: 629  -------IKSLEG---------------KNYTFQALLDHGIIELVGTEEEEDCCTAW--- 663
                   I  LE                +++ +  L+  G+IE V  EEEE         
Sbjct: 674  LVLVKEHIHKLEADKELPADLDPEERRERHFGWDGLVKSGVIEYVDAEEEETIMIVMTPE 733

Query: 664  ----------GIKYLLKDIEDK----------KPIKFTHCELDMSFLLGLSCGIIPFANH 703
                      G     +D  D+          K   +THCE+  S +LG+   IIPF +H
Sbjct: 734  DLEASKQYQAGYGMPEEDTTDRNRRVKSNLSQKAHTWTHCEIHPSMILGICASIIPFPDH 793

Query: 704  DHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHN 763
            + + R  YQS     QA+G   TN   R++T+++ L+YPQ+PL  T   +          
Sbjct: 794  NQSPRNTYQS-AMGKQAMGVFLTNFEQRMETMANILYYPQKPLATTRSME---------- 842

Query: 764  HILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQ 823
              L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y        + 
Sbjct: 843  -FLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLT 901

Query: 824  VKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA------------ 871
            V  R    M +   ++ K G  D +DDDG    G  +   DI+IGK +            
Sbjct: 902  VVERFEKPMRS-DTLRMKHGTYDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEAEELGQR 960

Query: 872  ---DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKG 928
                +  D S  L+ TE G+V +V++S+++D   F  V +R  + P +GDKF+S HGQKG
Sbjct: 961  TKQHTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKG 1020

Query: 929  VLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKR 988
             +G     E+ PFT +G+ PD++INPHA PSR T   L+E  L K          S L+ 
Sbjct: 1021 TIGITYRHEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSK---------VSSLRG 1071

Query: 989  Y---ATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMS 1045
            Y   ATPF   +VD+++  L   G+   G E +Y+G TG  + + +F+GPT+YQRL HM 
Sbjct: 1072 YEGDATPFTDVTVDSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMV 1131

Query: 1046 EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQ 1105
            +DK+  R  GP   LTRQPV  R R GG++FGEMERDC+IAHGA++ L ERLF +SD ++
Sbjct: 1132 DDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASSFLKERLFDVSDPFR 1191

Query: 1106 MHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
            +HIC  C  +   I +V  G  +     CR C + + I + ++PY AKLL QEL SM I 
Sbjct: 1192 VHICDIC-GLMTPIAKVKKGDFE-----CRACRNKNKISQVHIPYAAKLLFQELASMNIA 1245

Query: 1166 LKFDTE 1171
             +  T+
Sbjct: 1246 ARMYTK 1251


>gi|324120614|dbj|BAJ78698.1| RNA polymerase II second largest subunit [Isonychia japonica]
          Length = 1150

 Score =  622 bits (1605), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 417/1215 (34%), Positives = 620/1215 (51%), Gaps = 134/1215 (11%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPSKKGEGEWRYA 84
            C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S + E   RY 
Sbjct: 1    CWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIETPPRYL 60

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKF 144
             ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +          T    
Sbjct: 61   -LKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLTYSAPLYVDI----------TKTVV 108

Query: 145  KTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFII 198
            K G      ++ +  +     IG+IP+M++S  C + G+      E  +C  D GGYFII
Sbjct: 109  KEG------EDPIDTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFII 162

Query: 199  KGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR---------NRLIVRLVDMSKFED 249
             G+EKV +AQE++    ++V        AYK+E +          + L V ++  S  + 
Sbjct: 163  NGSEKVLIAQEKMATNTVYVFAMKDGKFAYKAEIRSCQEHSSRPTSTLWVNMMARSG-QS 221

Query: 250  IKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIH 305
            IK    G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  ++ ++  S+ 
Sbjct: 222  IKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLD 281

Query: 306  DA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEECMNTYLFPSL 351
            +A      N    F   R A         +KY  ++++    P    ++ C         
Sbjct: 282  EAFVIQEQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFC--------- 332

Query: 352  HGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRM 411
                +KA FLGYMV  LL A   RR+ D+RD + NKRL+LAG LL    +    +  K +
Sbjct: 333  --ETKKAYFLGYMVHRLLLAALSRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEV 390

Query: 412  AKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRAN 471
                Q+ +   +    +E  +   I+T+GL  + +TG W    K  +  +G+   L R  
Sbjct: 391  RMYAQKFIDRGKDFN-LELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLT 449

Query: 472  PLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST 531
               TL  LRR    +   GK+   R  H + WG IC   TP+G   GLVKNL +   +S 
Sbjct: 450  FASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISV 509

Query: 532  -SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRK 590
             S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    ++ LR+ RR+ 
Sbjct: 510  GSQPSPILEFLEEWSMENLEEIAPSAILDATKIFVNGCWVGIHRDPEQLMATLRKLRRQM 569

Query: 591  EL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKSLEGKNYTFQ 640
            ++  ++V + RD    E+RI+ DAGRI RPLL+VEN         +  +K  +  NY +Q
Sbjct: 570  DIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENSNLLLKKRHIDMLKDRDYNNYGWQ 629

Query: 641  ALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPF 700
             L+  G++E + T EEE    A   + L  D E      +THCE+  + +LG+   IIPF
Sbjct: 630  FLVSSGVVEYIDTLEEETVMIAMSPEDLHHDKEYAYCTTYTHCEIHPAMILGVCASIIPF 689

Query: 701  ANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGY 760
             +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YPQ+PL  T   + L     
Sbjct: 690  PDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLR---- 744

Query: 761  GHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNK 820
                     EL  G N++VA+  + GYNQEDS++MN +++ERG FRS   RSYK      
Sbjct: 745  -------FRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFRSIFYRSYKD----- 792

Query: 821  EMQVKRRSSDDMVNFGKIQSKIGR------VDSLDDDGFPFIGANLQSGDIVIGKYAD-- 872
              Q  +R  D    F K      +       D LDDDG    G  +   D++IGK     
Sbjct: 793  --QESKRIGDQEEQFEKPNRATCQGMRNAIYDKLDDDGIIAPGVRVSGDDVIIGKTITLP 850

Query: 873  -------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDK 919
                         +  D S  L+++E G+V +V+++ N +G  FS + +R VR P +GDK
Sbjct: 851  ENDDELEGTTKRYTKRDASTFLRNSETGIVDQVMITLNSEGYKFSKIRVRSVRIPQIGDK 910

Query: 920  FSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALG 979
            F+S HGQKG  G    QE+ PFT +G+ PDIVINPHA PSR T G L+E   GK   +  
Sbjct: 911  FASRHGQKGTCGIQYRQEDMPFTCEGLTPDIVINPHAIPSRMTIGHLIECLQGK--VSAN 968

Query: 980  KGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFY 1038
            KG        ATPF    +V  I+  L   G+   G E +Y+G TG  + + IF+GPT+Y
Sbjct: 969  KGEIGD----ATPFNDAVNVQKISSLLQEYGYHLRGNEVMYNGHTGRKINAQIFLGPTYY 1024

Query: 1039 QRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLF 1098
            QRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC I+HGAA  L ERLF
Sbjct: 1025 QRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLF 1084

Query: 1099 TLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLC 1156
             +SD Y++H+C  C    +AN+               C+ C +   I +  +PY AKLL 
Sbjct: 1085 EVSDPYRIHVCNFCGLIAIANLRNNTFE---------CKGCKNKTQISQVRLPYAAKLLF 1135

Query: 1157 QELFSMGITLKFDTE 1171
            QEL SM I  +   E
Sbjct: 1136 QELMSMNIAPRLMVE 1150


>gi|345561256|gb|EGX44352.1| hypothetical protein AOL_s00193g80 [Arthrobotrys oligospora ATCC
            24927]
          Length = 1258

 Score =  622 bits (1605), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 425/1269 (33%), Positives = 644/1269 (50%), Gaps = 167/1269 (13%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYAS 85
            C     SFF+  GLVS QI+S++EF+   +Q+  D   + +++     + +G    R+  
Sbjct: 21   CWTVISSFFDAKGLVSQQIDSFDEFVSTTMQELIDEDNQLVLDHNTPSNDEGIALRRF-E 79

Query: 86   MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVT----- 140
            ++FG V L +P+F  G+G  +  M P+ ARL+N+TY+S + +++  +V   +  +     
Sbjct: 80   IKFGNVLLSRPTFTEGDGSTQV-MQPQEARLRNLTYASPLYLQMSQKVMVAREKSMAEKE 138

Query: 141  ---------SDKFKTGREQYIQKEVLSDET---------------TNIIIGRIPVMVKSD 176
                     +++ +   +Q    +V+ D T               T + IG+IP+M+KS 
Sbjct: 139  EDEDEDMDDAEEGEKKEKQDFHWQVIGDTTEEVGDDDDDIDTSNHTRVFIGKIPIMLKSQ 198

Query: 177  LCWMKGVEK------GDCDFDHGGYFIIKGAEKVFVAQEQI------CLKRLWVSNSMGW 224
             C +K   +       +C +D GGYF+I G+EKV +AQE+       C K+   S  + +
Sbjct: 199  YCVLKEFNEDGLYGLNECPYDQGGYFVINGSEKVLIAQERSAANIVQCFKKAAPS-PISY 257

Query: 225  TVAYKSE-NKRNRLIVRLVD--MSKFEDIKGGEKVL--SVYFLSTEIPIWILFFALGVSS 279
                +S   K +RLI  L    M+K E   G  + +  ++ ++ T++PI ++F ALGV S
Sbjct: 258  IAEIRSALEKGSRLISSLTIKLMAKGEGRTGFGRTIRSTLPYIKTDVPIAVVFRALGVVS 317

Query: 280  DKEIVNLIDFTCEDCSILNILFASIHDADNKCD-----EFRKGRNALKYV--DKLIKGTT 332
            D++I+N + +   D ++L +L   I +A    D     +F   R + + +  DK IK   
Sbjct: 318  DEDILNRVCYDRNDTAMLEMLKPCIEEAFVIQDREVALDFIGKRGSAQGINRDKRIK--- 374

Query: 333  FPPGESTEECMNTYLFPSL-----HGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNK 387
                   +E M   L P +     H T+ KA FLGYMV  +LQ    RR+ D+RD F  K
Sbjct: 375  -----YAKEIMQKELLPHISQAEGHETR-KAFFLGYMVHKMLQCALERRETDDRDHFGRK 428

Query: 388  RLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFST 447
            RL+LAG LL    ++      K + K LQ+ +   R    +   + ++ +TNGL  + +T
Sbjct: 429  RLDLAGPLLANLFRMLFKKLVKDVFKYLQKCVESGRDFN-VTLAIKSNTITNGLKYSLAT 487

Query: 448  GAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKIC 507
            G W    K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C
Sbjct: 488  GNWGDQKKPASAKAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVC 547

Query: 508  FLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVD 566
               TP+G+ CGLVKNL +   ++  S  EPI   +    +E L            KVF++
Sbjct: 548  PAETPEGQACGLVKNLSLMSYITVGSPTEPIQAFMEQRNLEPLETFEPGRSPNVTKVFIN 607

Query: 567  GDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN- 625
            G W+GV +D+ S    +   RR   +  +V + RD    E +IF DAGR+ RPL V++N 
Sbjct: 608  GSWVGVHRDAASLYRTVLSLRRTNVISHEVSVIRDIRDREFKIFSDAGRVTRPLYVIDND 667

Query: 626  ------------MGKIKSLEG-------------KNYTFQALLDHGIIELVGTEEEEDCC 660
                           I+ LE              + Y +  LL+ G +E V  EEEE   
Sbjct: 668  PGSLRKGELVLQKYHIEKLENAKFQTAEDLAPGEEKYGWNGLLNDGCVEYVDAEEEETIM 727

Query: 661  TAW-------------GIKYLLKDIED-KKPIK---------FTHCELDMSFLLGLSCGI 697
             +              G +  + D  D  K +K         +THCE+  S +LG+   I
Sbjct: 728  ISMSPEDLEISRQVQAGYEIPVDDSGDMAKRVKAKVNPYAHTWTHCEIHPSMILGICASI 787

Query: 698  IPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGK 757
            IPF +H+ + R  YQS     QA+G   TN + R+DT+++ L+YPQ+PL  T   +    
Sbjct: 788  IPFPDHNQSPRNTYQS-AMGKQAMGIFLTNFNERMDTMANILYYPQKPLATTRSME---- 842

Query: 758  PGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEV 817
                    L   EL  GQNAIV +  + GYNQEDS++MN++S++RG+FRS   R+Y    
Sbjct: 843  -------FLKFRELPAGQNAIVGIMCYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYMDSE 895

Query: 818  DNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH 877
                M         M N   ++ K G  D LDDDG    G  +   DI+IGK A   AD 
Sbjct: 896  KRIGMTTIEEFEKPMRN-NTLRLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIPADT 954

Query: 878  ---------------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSS 922
                           S  L+ TE G+V +V+L++N +G  F  V +R  + P +GDKF+S
Sbjct: 955  EELGQRTKNHTKRDVSTPLRSTENGIVDQVMLTTNAEGMRFVKVRMRTTKVPQIGDKFAS 1014

Query: 923  MHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGI 982
             HGQKG +G     E+ PFT +GIVPD++INPHA PSR T   L+E  L K +++L    
Sbjct: 1015 RHGQKGTIGITYRHEDMPFTAEGIVPDLIINPHAIPSRMTIAHLIECQLSK-VSSL---- 1069

Query: 983  CSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLI 1042
              G +  ATPF   +V+ ++  L   G+   G E +Y+G TG+ +   +F+GPT+YQRL 
Sbjct: 1070 -RGFEGDATPFTEVTVENVSRLLREHGYQSRGFEVMYNGHTGKKLVCQVFLGPTYYQRLR 1128

Query: 1043 HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSD 1102
            HM +DK+  R  GPV  LTRQPV  R R GG++FGEMERDC+I+HGA+A L ERLF +SD
Sbjct: 1129 HMVDDKIHARARGPVQILTRQPVEGRARDGGLRFGEMERDCMISHGASAFLKERLFEVSD 1188

Query: 1103 SYQMHICRKC---KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQEL 1159
            ++++H+C  C     +AN+ + +           CR C +   I + ++PY AKLL QEL
Sbjct: 1189 AFRVHVCDICGLMTPIANLKKNLF---------ECRPCRNKTKISQIHLPYAAKLLFQEL 1239

Query: 1160 FSMGITLKF 1168
             +M I  + 
Sbjct: 1240 TAMNIAARM 1248


>gi|327298359|ref|XP_003233873.1| DNA-dependent RNA polymerase II RPB140 [Trichophyton rubrum CBS
            118892]
 gi|326464051|gb|EGD89504.1| DNA-dependent RNA polymerase II RPB140 [Trichophyton rubrum CBS
            118892]
          Length = 1258

 Score =  622 bits (1605), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 426/1266 (33%), Positives = 637/1266 (50%), Gaps = 158/1266 (12%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGE--WRY 83
            C     +FF   GLVS Q++S++EFI   +Q+  +  G+  ++    PS         R 
Sbjct: 24   CWTVISAFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTVPPSDDEPDPVVLRR 83

Query: 84   ASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT-QKRVTSD 142
              ++FG V L +PS   G+G     M P+ ARL+N+TY+S + + +  ++   ++R+ S+
Sbjct: 84   YELKFGTVMLARPSMTEGDGATSI-MLPQEARLRNLTYASPLYLGISKKIMEGRERLLSE 142

Query: 143  KF-------------KTGREQYI---QKEVLSDETT--NIIIGRIPVMVKSDLCWMKGVE 184
            +              +  R  Y+   +K  + DE    NI IG++P+M+KS  C +K + 
Sbjct: 143  RDEEEEEIEEKGDEERRNRGTYLHWERKPTMEDEAEEENIFIGKMPIMLKSKYCILKDLG 202

Query: 185  K------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENK 233
            +       +C +D GGYF+I G+EKV +AQE+     + V      +   +    +S  +
Sbjct: 203  EQALYNWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAVE 262

Query: 234  RNRLIVRLVDM---SKFEDIKGG--EKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLI 287
            +   I+  + +   SK +  KGG    + S   ++ T+IPI ++F ALGV SD++I+N I
Sbjct: 263  KGSRILSQLSIKLFSKGDSAKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDEDILNHI 322

Query: 288  DFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTY- 346
             +   D S+L +L   I +     D       AL ++ K  +G++  P    +E    Y 
Sbjct: 323  CYDRNDTSMLEMLKPCIEEGFVIQDR----EVALDFISK--RGSS--PMSMNQEKRVRYA 374

Query: 347  -------LFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGEL 395
                     P +  ++    +KA FLGYMV  LLQ   GRR  D+RD F  KRL+LAG L
Sbjct: 375  RDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPL 434

Query: 396  LERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFK 455
            L    +V      K + K +QR +   R +  +   + AS LT GL  A +TG W    K
Sbjct: 435  LANLFRVLFMRLTKDLYKYVQRCVETGRQLY-LNIGVKASTLTGGLKYALATGNWGEQKK 493

Query: 456  RTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGE 515
                 +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+
Sbjct: 494  AASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQ 553

Query: 516  NCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCK 574
             CGLVKNL +   ++  +  EPI + +    ME L +          KVFV+G W+GV +
Sbjct: 554  ACGLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTKVFVNGVWVGVHR 613

Query: 575  DSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK------ 628
            D    V  ++  RRR  +  +V +  D    E +IF DAGR+ RPL VV+N  K      
Sbjct: 614  DPAHLVGTVQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSENSGS 673

Query: 629  -------IKSLEG---------------KNYTFQALLDHGIIELVGTEEEEDCCTAW--- 663
                   I  LE                +++ +  L+  G+IE V  EEEE         
Sbjct: 674  LVLVKEHIHKLEADKELPPDLDPEERRERHFGWDGLVKSGVIEYVDAEEEETIMIVMTPE 733

Query: 664  ----------GIKYLLKDIEDK----------KPIKFTHCELDMSFLLGLSCGIIPFANH 703
                      G     +D  D+          K   +THCE+  S +LG+   IIPF +H
Sbjct: 734  DLEASKQYQAGYGMPEEDTTDRNRRVKSNLSQKAHTWTHCEIHPSMILGICASIIPFPDH 793

Query: 704  DHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHN 763
            + + R  YQS     QA+G   TN   R++T+++ L+YPQ+PL  T   +          
Sbjct: 794  NQSPRNTYQS-AMGKQAMGVFLTNFEQRMETMANILYYPQKPLATTRSME---------- 842

Query: 764  HILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQ 823
              L   EL  GQN IVA+  + GYNQEDS++MN++S++RG+FRS   R+Y        + 
Sbjct: 843  -FLKFRELPAGQNVIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLT 901

Query: 824  VKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA------------ 871
            V  R    M +   ++ K G  D +DDDG    G  +   DI+IGK +            
Sbjct: 902  VVERFEKPMRS-DTLRMKHGTYDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEAEELGQR 960

Query: 872  ---DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKG 928
                +  D S  L+ TE G+V +V++S+++D   F  V +R  + P +GDKF+S HGQKG
Sbjct: 961  TKQHTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKG 1020

Query: 929  VLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKR 988
             +G     E+ PFT +G+ PD++INPHA PSR T   L+E  L K          S L+ 
Sbjct: 1021 TIGITYRHEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSK---------VSSLRG 1071

Query: 989  Y---ATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMS 1045
            Y   ATPF   +VD+++  L   G+   G E +Y+G TG  + + +F+GPT+YQRL HM 
Sbjct: 1072 YEGDATPFTDVTVDSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMV 1131

Query: 1046 EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQ 1105
            +DK+  R  GP   LTRQPV  R R GG++FGEMERDC+IAHGA++ L ERLF +SD ++
Sbjct: 1132 DDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASSFLKERLFDVSDPFR 1191

Query: 1106 MHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
            +HIC  C  +   I +V  G  +     CR C + + I + ++PY AKLL QEL SM I 
Sbjct: 1192 VHICDIC-GLMTPIAKVKKGDFE-----CRACRNRNKISQVHIPYAAKLLFQELASMNIA 1245

Query: 1166 LKFDTE 1171
             +  T+
Sbjct: 1246 ARMYTK 1251


>gi|324120678|dbj|BAJ78730.1| RNA polymerase II second largest subunit [Panorpa takenouchii]
          Length = 1172

 Score =  622 bits (1605), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 414/1219 (33%), Positives = 623/1219 (51%), Gaps = 130/1219 (10%)

Query: 17   LGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPSK 75
            +  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S 
Sbjct: 14   ISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIDLQAEAQHTSG 73

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT 135
            + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +      
Sbjct: 74   EIETPPRYL-LKFEQIYLSKPTHWEKDGSPS-PMMPNEARLRNLTYSAPLYVDIT----- 126

Query: 136  QKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCD 189
             K +  D           K+ +  +     IG+IP+M++S  C + G+      E  +C 
Sbjct: 127  -KTIVQDG----------KDSVETQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECP 175

Query: 190  FDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVRLV 242
             D GGYFII G+EKV +AQE++    ++V +      AYK+E       + R    + + 
Sbjct: 176  LDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKFAYKAEIRSCLEHSSRPTSTLWVN 235

Query: 243  DMSKF-EDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSIL 297
             M++  + IK    G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  ++
Sbjct: 236  MMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDQEMM 295

Query: 298  NILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEECM 343
             ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C 
Sbjct: 296  EMVKPSLDEAFVVQEQNVALNFIGARGARPGVTKDKRIKYAREILQKEMLPHVGVSDFC- 354

Query: 344  NTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVH 403
                        +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL    +  
Sbjct: 355  ----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGL 404

Query: 404  IAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGI 463
              +  K +    Q+ +   +    +E  +   I+T+GL  + +TG W    K  +  +G+
Sbjct: 405  FKNLMKEVRMYAQKFIDKGKDFN-LELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 463

Query: 464  VANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNL 523
               L R     TL  LRR    +   GK+   R  H + WG IC   TP+G   GLVKNL
Sbjct: 464  SQVLNRLTFASTLSHLRRINSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 523

Query: 524  GVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSE 582
             +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    +S 
Sbjct: 524  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMST 583

Query: 583  LRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKSL 632
            LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VEN         +  +K  
Sbjct: 584  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENRNLLLKKRHVDMLKER 643

Query: 633  EGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLG 692
            +  NY +Q L+  G++E + T EEE    A     L ++ E      +THCE+  + +LG
Sbjct: 644  DYNNYGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQEKEYAYCTTYTHCEIHPAMILG 703

Query: 693  LSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMIS 752
            +   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T   
Sbjct: 704  VCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNYHVRMDTLAHVLYYPMKPLVTTRSM 762

Query: 753  DCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRS 812
            +            L   EL  G N IVA+  + GYNQEDS+++N +++ERG FRS   RS
Sbjct: 763  E-----------YLRFRELPAGINTIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRS 811

Query: 813  YK----AEVDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDI 865
            YK      + ++E Q +   R+S   M N           D LD+DG    G  +   D+
Sbjct: 812  YKDSETKRLGDQEEQFEKPTRQSCQGMRN--------ALYDKLDEDGIIAPGIRVSGDDV 863

Query: 866  VIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQ 910
            +IGK                  +  D S  L+++E G+V +V+L+ N +G  F  + +R 
Sbjct: 864  IIGKTITLPENDDELEGTTKRHTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS 923

Query: 911  VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA 970
            VR P +GDKF+S HGQKG  G    QE+ PFT +G+ PDI+INPHA PSR T G L+E  
Sbjct: 924  VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECI 983

Query: 971  LGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRS 1029
             GK       G   G    ATPF    +V  I+  L   G+   G E +Y+G TG  + +
Sbjct: 984  QGK------LGANKGEIGDATPFNDAVNVQKISTLLQEYGYHLRGNEVMYNGHTGRKINA 1037

Query: 1030 LIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA 1089
             +F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC IAHGA
Sbjct: 1038 QVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGA 1097

Query: 1090 AANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVP 1149
            A  L ERLF +SD Y++H+C  C  +A           +     C+ C +   I +  +P
Sbjct: 1098 AQFLRERLFEVSDPYRIHVCNFCGLIAI-------ANLRSNTFECKGCKNKTQISQVRLP 1150

Query: 1150 YGAKLLCQELFSMGITLKF 1168
            Y AKLL QEL SM I  + 
Sbjct: 1151 YAAKLLFQELMSMNIAPRL 1169


>gi|326484701|gb|EGE08711.1| DNA-dependent RNA polymerase II RPB140 [Trichophyton equinum CBS
            127.97]
          Length = 1258

 Score =  622 bits (1605), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 427/1266 (33%), Positives = 637/1266 (50%), Gaps = 158/1266 (12%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGE--WRY 83
            C     +FF   GLVS Q++S++EFI   +Q+  +  G+  ++    PS         R 
Sbjct: 24   CWTVISAFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTVPPSDDEPDPVVLRR 83

Query: 84   ASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT-QKRVTSD 142
              ++FG V L +PS   G+G     M P+ ARL+N+TY+S + + +  ++   ++R+ S+
Sbjct: 84   YELKFGTVMLARPSMTEGDGATSI-MLPQEARLRNLTYASPLYLGISKKIMEGRERLLSE 142

Query: 143  KF-------------KTGREQYI---QKEVLSDETT--NIIIGRIPVMVKSDLCWMKGVE 184
            +              +  R  Y+   +K  + DE    NI IG++P+M+KS  C +K + 
Sbjct: 143  RDEEEEEIEEKGDEERRNRGTYLHWERKPTMEDEAEEENIFIGKMPIMLKSKYCILKDLG 202

Query: 185  K------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENK 233
            +       +C +D GGYF+I G+EKV +AQE+     + V      +   +    +S  +
Sbjct: 203  EQALYNWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAVE 262

Query: 234  RNRLIVRLVDM---SKFEDIKGG--EKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLI 287
            +   I+  + +   SK +  KGG    + S   ++ T+IPI ++F ALGV SD++I+N I
Sbjct: 263  KGSRILSQLSIKLFSKGDSAKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDEDILNHI 322

Query: 288  DFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTY- 346
             +   D  +L +L   I +     D       AL ++ K  +G++  P    +E    Y 
Sbjct: 323  CYDRNDTPMLEMLKPCIEEGFVIQDR----EVALDFISK--RGSS--PMSMNQEKRVRYA 374

Query: 347  -------LFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGEL 395
                     P +  ++    +KA FLGYMV  LLQ   GRR  D+RD F  KRL+LAG L
Sbjct: 375  RDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPL 434

Query: 396  LERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFK 455
            L    +V      K + K +QR +   R +  +   + AS LT GL  A +TG W    K
Sbjct: 435  LANLFRVLFMRLTKDLYKYVQRCVETGRQLY-LNIGVKASTLTGGLKYALATGNWGEQKK 493

Query: 456  RTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGE 515
                 +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+
Sbjct: 494  AASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQ 553

Query: 516  NCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCK 574
             CGLVKNL +   ++  +  EPI + +    ME L +          KVFV+G W+GV +
Sbjct: 554  ACGLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTKVFVNGVWVGVHR 613

Query: 575  DSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK------ 628
            D    V  ++  RRR  +  +V +  D    E +IF DAGR+ RPL VV+N  K      
Sbjct: 614  DPAHLVGTVQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSENSGS 673

Query: 629  -------IKSLEG---------------KNYTFQALLDHGIIELVGTEEEEDCCTAW--- 663
                   I  LE                +++ +  L+  G+IE V  EEEE         
Sbjct: 674  LVLVKEHIHKLEADKELPPDLDPEERRERHFGWDGLVKSGVIEYVDAEEEETIMIVMTPE 733

Query: 664  ----------GIKYLLKDIEDK----------KPIKFTHCELDMSFLLGLSCGIIPFANH 703
                      G     +D  D+          K   +THCE+  S +LG+   IIPF +H
Sbjct: 734  DLEASKQYQAGYGMPEEDTTDRNRRVKSNLSQKAHTWTHCEIHPSMILGICASIIPFPDH 793

Query: 704  DHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHN 763
            + + R  YQS     QA+G   TN   R++T+++ L+YPQ+PL  T   +          
Sbjct: 794  NQSPRNTYQS-AMGKQAMGVFLTNFEQRMETMANILYYPQKPLATTRSME---------- 842

Query: 764  HILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQ 823
              L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y        + 
Sbjct: 843  -FLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLT 901

Query: 824  VKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD----------- 872
            V  R    M +   ++ K G  D +DDDG    G  +   DI+IGK +            
Sbjct: 902  VVERFEKPMRS-DTLRMKHGTYDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEAEELGQR 960

Query: 873  ----SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKG 928
                +  D S  L+ TE G+V +V++S+++D   F  V +R  + P +GDKF+S HGQKG
Sbjct: 961  TKQHTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKG 1020

Query: 929  VLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKR 988
             +G     E+ PFT +GI PD++INPHA PSR T   L+E  L K          S L+ 
Sbjct: 1021 TIGITYRHEDMPFTREGITPDLIINPHAIPSRMTIAHLIECQLSK---------VSSLRG 1071

Query: 989  Y---ATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMS 1045
            Y   ATPF   +VD+++  L   G+   G E +Y+G TG  + + +F+GPT+YQRL HM 
Sbjct: 1072 YEGDATPFTDVTVDSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMV 1131

Query: 1046 EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQ 1105
            +DK+  R  GP   LTRQPV  R R GG++FGEMERDC+IAHGA++ L ERLF +SD ++
Sbjct: 1132 DDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASSFLKERLFDVSDPFR 1191

Query: 1106 MHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
            +HIC  C  +   I +V  G  +     CR C + + I + ++PY AKLL QEL SM I 
Sbjct: 1192 VHICDIC-GLMTPIAKVKKGDFE-----CRACRNKNKISQVHIPYAAKLLFQELASMNIA 1245

Query: 1166 LKFDTE 1171
             +  T+
Sbjct: 1246 ARMYTK 1251


>gi|431893877|gb|ELK03694.1| DNA-directed RNA polymerase II subunit RPB2 [Pteropus alecto]
          Length = 1167

 Score =  622 bits (1604), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 429/1241 (34%), Positives = 625/1241 (50%), Gaps = 160/1241 (12%)

Query: 2    DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-D 60
            D DD+  T      DL +E     C     S+F+E GLV  Q++S++EFI+  +Q+   D
Sbjct: 4    DEDDDEITP-----DLWQEA----CWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 54

Query: 61   SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
            +    +       S + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+T
Sbjct: 55   APPIDLQAEAQHASGEVEEPPRYL-LKFEQIYLSKPTHWERDGAPS-PMMPNEARLRNLT 112

Query: 121  YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
            YS+ + V +          T    K G EQ      L  +     IG+IP+M++S  C +
Sbjct: 113  YSAPLYVDI----------TKTVIKEGEEQ------LQTQHQKTFIGKIPIMLRSTYCLL 156

Query: 181  KGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR 234
             G+      E  +C  D GGYFII G+EKV +AQE++    ++V        AY  E + 
Sbjct: 157  NGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRS 216

Query: 235  N-------------RLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDK 281
                           ++ R    +K   I G   V ++ ++  E+PI I+F ALG  SD+
Sbjct: 217  CLENSSRPTSTIWVSMLARGGQGAKKSAI-GQRIVATLPYIKQEVPIIIVFRALGFVSDR 275

Query: 282  EIVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKL 327
            +I+  I +  ED  ++ ++  S+ +A      N    F   R A         +KY  ++
Sbjct: 276  DILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEV 335

Query: 328  IKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNK 387
            ++    P    ++ C             +KA FLGYMV  LL A  GRR+ D+RD + NK
Sbjct: 336  LQKEMLPHVGVSDFC-----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNK 384

Query: 388  RLELAGELLERELKVHIAHARKRMAKALQRD--LYGDRTVR-----PIEYYLDASILTNG 440
            RL+LAG LL        A   + M K L ++  +Y  + +       +E  ++  I+++G
Sbjct: 385  RLDLAGPLL--------AFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAINTKIISDG 436

Query: 441  LSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHP 500
            L  + +TG W    K  +  +G+   L R     TL  LRR    +   GK+   R  H 
Sbjct: 437  LKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHN 496

Query: 501  SHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGG 559
            + WG +C   TP+G   GLVKNL +   +S  S   PI E L    ME L + +  ++  
Sbjct: 497  TLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIAD 556

Query: 560  KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILR 618
              K+FV+G W+G+ KD    ++ LR+ RR+ ++  ++V + RD  + E+RI+ DAGRI R
Sbjct: 557  ATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICR 616

Query: 619  PLLVVE---------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLL 669
            PLL+VE         ++ ++K  E  NY++Q L+  G++E + T EEE    A       
Sbjct: 617  PLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD--- 673

Query: 670  KDIEDKKPI---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTT 726
             D+++K+      +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   T
Sbjct: 674  -DLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYIT 731

Query: 727  NPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLG 786
            N  +R+DTL+H L+YPQ+PL  T   +            L   EL  G N+IVA+  + G
Sbjct: 732  NFHVRMDTLAHVLYYPQKPLVTTRSME-----------YLRFRELPAGINSIVAIASYTG 780

Query: 787  YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGR-- 844
            YNQEDS++MNR++++RG FRS   RSYK        Q  ++  D    F K   +  +  
Sbjct: 781  YNQEDSVIMNRSAVDRGFFRSVFYRSYKE-------QESKKGFDQEEVFEKPTRETCQGM 833

Query: 845  ----VDSLDDDGFPFIGANLQSGDIVIGKYAD---------------SGADHSIKLKHTE 885
                 D LDDDG    G  +   D++IGK                  +  D S  L+ +E
Sbjct: 834  RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE 893

Query: 886  RGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQG 945
             G+V +V+++ N +G  F  + +R VR P +GDKF+S HGQKG  G    QE+ PFT +G
Sbjct: 894  TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG 953

Query: 946  IVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQ 1004
            I PDI+INPHA PSR T G L+E   GK   +  KG        ATPF    +V  I+  
Sbjct: 954  ITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGEIGD----ATPFNDAVNVQKISNL 1007

Query: 1005 LHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQP 1064
            L   G+   G E LY+G TG  + S IFIGPT+YQRL HM +DK+  R  GP+  L RQP
Sbjct: 1008 LSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQP 1067

Query: 1065 VADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVG 1124
            +  R R GG++FGEMERDC IAHGAA  L ERLF  SD YQ+H+C  C  +A        
Sbjct: 1068 MEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAI------- 1120

Query: 1125 GGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
               +     CR C +   I    +PY  KLL QEL SM I 
Sbjct: 1121 ANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIA 1161


>gi|154304837|ref|XP_001552822.1| hypothetical protein BC1G_09004 [Botryotinia fuckeliana B05.10]
          Length = 1207

 Score =  622 bits (1604), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 414/1220 (33%), Positives = 622/1220 (50%), Gaps = 154/1220 (12%)

Query: 16   DLGEE---FLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYD 72
            D GEE        C     SFF   GLVS Q++S++EF++  +Q+  +   +  ++    
Sbjct: 12   DYGEEDAGITAEDCWTVISSFFEAKGLVSQQLDSFDEFVQTTMQELVEENSQLTLDQNNP 71

Query: 73   PSKKGEG-EWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKV-- 129
            PS        R   ++FG + L +P+   G+G  +  M P+ ARL+N+TYSS + +++  
Sbjct: 72   PSSHDNPIALRRYEIKFGTIMLSRPAMTEGDGSTQV-MLPQEARLRNLTYSSPLYIEMTK 130

Query: 130  QFQVYTQKRVTSDKFKTGRE-------QYIQKEVLSDETTN------------IIIGRIP 170
              QV  ++ V  ++    +E       ++  + V   E  +            + IG++P
Sbjct: 131  STQVAVERPVPLNELDDEQEAEMVNGGEHPTRLVWEYEDGDPEGPKGAPLPEQVYIGKLP 190

Query: 171  VMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMG 223
            +M+KS+ C +KG+++       +C +D GGYFII G+EKV +AQE+     + V      
Sbjct: 191  MMLKSEFCILKGLDEDELYGWNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKPAN 250

Query: 224  WTVAYKSE-----NKRNRLI----VRLVDMSKFEDIKGGEKVLSVY-FLSTEIPIWILFF 273
              V+Y +E      K +RLI    ++L D         G+ V S   ++  +IPI I+F 
Sbjct: 251  SAVSYLAEIRSALEKGSRLISSLQIKLYDKGDSNRGGFGKTVKSTLPYIKADIPIAIVFR 310

Query: 274  ALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTF 333
            ALGV SD++I+N I +   D  +L +L   I +A    D       AL ++ K   GT+ 
Sbjct: 311  ALGVVSDEDILNHICYDRNDTQMLEMLKPCIEEAFVIQDR----EVALDFIGKRGNGTSL 366

Query: 334  PPGESTE---ECMNTYLFPSLH----GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRN 386
               +  +   + M   L P +        +KA FLGYMV  LLQ   GRR+ D+RD F  
Sbjct: 367  TRDKRIKYARDIMQKELLPHISQKEGSETRKAFFLGYMVHKLLQCALGRRETDDRDHFGK 426

Query: 387  KRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFS 446
            KRL+LAG LL +  +         + + LQR +  +R    +   + ++ +TNGL  + +
Sbjct: 427  KRLDLAGPLLAKLFRNLFRRLTTDVYRYLQRCVENNREFN-LTLGVKSTTITNGLKYSLA 485

Query: 447  TGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKI 506
            TG W    K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +
Sbjct: 486  TGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLV 545

Query: 507  CFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFV 565
            C   TP+G+ CGLVKNL +   V+  +  +PI E +    ME L +          KVFV
Sbjct: 546  CPAETPEGQACGLVKNLALMCYVTVGTPSDPIVEFMIQRNMEVLEEYEPLRAPNATKVFV 605

Query: 566  DGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN 625
            +G W+G+ +D    V  ++  RR   +  +V + R+    E +IF DAGR+ RPLLV++N
Sbjct: 606  NGVWVGIHRDPAHLVKCVQDLRRSHLISHEVSLIREIRDREFKIFTDAGRVCRPLLVIDN 665

Query: 626  -----------------------------MGKIKSLEGKNYTFQALLDHGIIELVGTEEE 656
                                         M K + +    Y FQ L++ G++E +  EEE
Sbjct: 666  DPDSANKGNLVLNKDHIRRLEDDQLLPANMDKDEKVRNGYYGFQGLINDGVVEYLDAEEE 725

Query: 657  E-----------DCCTAWGIKYLLKDIED-------KKPIK-----FTHCELDMSFLLGL 693
            E           D        Y ++  E        K PI      +THCE+  S +LG+
Sbjct: 726  ETVMITMTPEDLDISRQLQAGYQIRPDESGDLNKRVKAPINPTAHVWTHCEIHPSMILGI 785

Query: 694  SCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISD 753
               IIPF +H+ + R  YQS     QA+G   TN  +R+DT+++ L+YPQ+PL  T   +
Sbjct: 786  CASIIPFPDHNQSPRNCYQS-AMGKQAMGVFLTNFDVRMDTMANILYYPQKPLATTRSME 844

Query: 754  CLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSY 813
                        L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y
Sbjct: 845  -----------FLKFRELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSLFYRAY 893

Query: 814  KAEVDNKEMQVKRRSSDDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDIVI 867
                     Q KR   + +  F K      ++ K G  D LDDDG    G  +   DI+I
Sbjct: 894  TD-------QEKRIGMNVVEQFEKPYRSDTLKLKQGTYDKLDDDGIVAPGVRVTGADIII 946

Query: 868  GKYADSGADH---------------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVR 912
            GK A    D                S  L+ TE G+V +V++++N +G  F  V +R  +
Sbjct: 947  GKTAPIAPDSEEMGQRTKAHVKRDASTPLRSTESGLVDQVLITTNAEGLRFVKVRMRTTK 1006

Query: 913  SPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALG 972
             P +GDKF+S HGQKG +G    Q++ PFT +G+VPD++INPHA PSR T   L+E  L 
Sbjct: 1007 IPQIGDKFASRHGQKGTIGITYMQQDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLS 1066

Query: 973  KGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIF 1032
            K ++ L      GL+  ATPF   +VD++++ L   G+   G E +Y G TG  + + +F
Sbjct: 1067 K-VSTL-----RGLEGDATPFTEVTVDSVSKLLRAHGYHSRGFEIMYHGHTGRKMMAQVF 1120

Query: 1033 IGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAAN 1092
            +GPT+YQRL HM +DK+  R  GPV  LTRQPV  R R GG++FGEMERDC+I+HGA+A 
Sbjct: 1121 LGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRFGEMERDCMISHGASAF 1180

Query: 1093 LHERLFTLSDSYQMHICRKC 1112
            L ERLF +SD++++HIC  C
Sbjct: 1181 LKERLFEVSDAFRVHICDIC 1200


>gi|66363138|ref|XP_628535.1| RNA polymerase beta subunit [Cryptosporidium parvum Iowa II]
 gi|46229549|gb|EAK90367.1| RNA polymerase beta subunit [Cryptosporidium parvum Iowa II]
          Length = 1177

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 410/1190 (34%), Positives = 615/1190 (51%), Gaps = 105/1190 (8%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPG--YDPSKKGEGEWRYASMRFG 89
            ++F + GLV+ Q+ S+N+FI   LQ+  D     I+ P   Y P ++ + + RY  ++FG
Sbjct: 27   TYFRDRGLVNQQLESFNDFIMYKLQEIVDEHPPIIITPQSQYRPDEQIDTKVRYV-LKFG 85

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
            Q++L +PS      G    ++P  ARL+N+TYSS + V  + +VY   ++  D    G E
Sbjct: 86   QLSLSRPSV-EEREGVARGLWPNEARLRNLTYSSPVFVDAEQKVY---KLEDD----GSE 137

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEK 203
              + + V S     + + +IP+M++S+ CW   + +      G+C +D GGYFII G EK
Sbjct: 138  TLVYETVYS----RLPLAKIPIMLRSEYCWTHNISERELQSAGECVYDQGGYFIINGMEK 193

Query: 204  VFVAQEQICLKRLWV-----SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLS 258
            V V QE++    +++      +   W    +S  +  +         +  D   G+ V +
Sbjct: 194  VLVGQERMANNFVYLFQKNQPSKYTWIAEIRSNREGMQATSGFSVKLRGSDGNQGQIVAT 253

Query: 259  VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGR 318
            + ++ T+IPI ILF ALGV SDK+I++   +   D  +L +L  S+ +      EF    
Sbjct: 254  LPYIRTDIPIAILFRALGVLSDKDILSRCVYDFNDTQMLALLRPSLEETF----EFFSQD 309

Query: 319  NALKYVDKLIKGTTFPPG-----ESTEECMNTYLFPSLHGTK----QKARFLGYMVKCLL 369
              L ++ K  +G T         +  +E     L P +  T     +KA F+GYMV  L 
Sbjct: 310  VCLDFIGK--RGPTVGAAREKRIQYAKELFEKELLPHVGVTSGSESRKAYFIGYMVHKLC 367

Query: 370  QAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIE 429
                GR   D+RD F  KRL+LAG L+            K + + LQR++   +      
Sbjct: 368  LGALGRVPEDDRDHFGKKRLDLAGPLVAASFGQCFRKMMKDVRRLLQRNIDNGKEFDVAG 427

Query: 430  YYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYT 489
                AS +T  +   F+TG W          +G+   L R      L  LRR    +   
Sbjct: 428  VIRSASYITQTIQYQFATGNWGKDKDGKIIRTGVSQVLSRLTFTSALSYLRRLNTPLGRE 487

Query: 490  GKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFNS-GMEK 548
            GK    R  H +HWG IC   TP+G + GLVKNL +   +S            +  GM+ 
Sbjct: 488  GKFAKPRQLHNTHWGMICPAETPEGHSVGLVKNLALMCEISVGYRPYAIRTFLDEWGMDS 547

Query: 549  LADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVR 608
            + +     +  K KVF++G+W+G   DS   +S LR  RR  E+P +  I  D +  EV+
Sbjct: 548  IDEIPPEGIKRKIKVFLNGNWVGCFDDSEDSISNLRMIRRSGEIPYETSIVLDVVNREVK 607

Query: 609  IFMDAGRILRPLLVVENMGKIK-------SL-------------EGKNYTFQALLDHGII 648
            +F D+GR +RPL +V   G +K       SL             E  +YT+  L++ GII
Sbjct: 608  LFTDSGRSMRPLYIVGEDGDLKIKKSHINSLLNENPSFDEKMEDEKHDYTWDDLVNTGII 667

Query: 649  ELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARR 708
            E +  EEEE    A  I  L   I+      +THCE+  S +LG+   IIPF +H+ + R
Sbjct: 668  EYIDCEEEETSMIAMFINDL--RIDRGYCSTYTHCEIHPSLILGVCASIIPFPDHNQSPR 725

Query: 709  VLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPR 768
             +YQS     QA+G  T+N ++R+DTL + L+YPQ+PL  T              ++  R
Sbjct: 726  NVYQS-AMGKQAMGVYTSNYNVRMDTLGYVLYYPQKPLVTTR----------AMTYMRFR 774

Query: 769  PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRS 828
             EL  G N IV +  + GYNQEDSL+MN++S++RG+FRS   R+Y +E   K++      
Sbjct: 775  -ELPAGINCIVGIMCYSGYNQEDSLIMNQSSIDRGLFRSVFFRTYVSE--EKQVGSNLIE 831

Query: 829  SDDMVNFGKIQS-KIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD-------------SG 874
            + ++ N  ++   + G   +LD DG    G  +   DI+IGK                + 
Sbjct: 832  AFELPNPEEVSGLRFGNYGNLDLDGLIEPGNRVLGDDIIIGKVGPINPEDRDTRIQKLTK 891

Query: 875  ADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLE 934
             D S+ ++ +E G+V +V+LS+N  G  F+ V +R +R P +GDKF+S HGQKG +G   
Sbjct: 892  RDCSVGIRTSEHGVVDEVLLSTNSKGVKFAKVKVRTIRIPHVGDKFASRHGQKGTIGITY 951

Query: 935  SQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFA 994
              E+ PFT  GI+PDI++NPHA PSR T G L+E  LGK  A        GL+  ATPF 
Sbjct: 952  RTEDMPFTQDGIIPDIIMNPHAIPSRMTIGHLIECLLGKACA------IQGLEGDATPFT 1005

Query: 995  TPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNT 1054
              +V+ I+ +LH +GF K G E +Y+G TG+ + S IFIGPT+YQRL HM +DK+  R  
Sbjct: 1006 KITVEEISSRLHSSGFQKNGNEVMYNGHTGKRLESRIFIGPTYYQRLKHMVDDKIHARAR 1065

Query: 1055 GPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKN 1114
            G V  LTRQP   R R GG++FGEMERDC+I+HGAA  L ERLF   D+Y++H+C  C  
Sbjct: 1066 GAVTMLTRQPREGRAREGGLRFGEMERDCMISHGAAKMLKERLFDQCDAYRVHVCEMCGL 1125

Query: 1115 VANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
            +      +   G++     C  C++   I +  +PY  KLL QEL +M I
Sbjct: 1126 IC-----IADLGKQ--HFECNACNNKSRISQICLPYACKLLLQELMAMSI 1168


>gi|324120672|dbj|BAJ78727.1| RNA polymerase II second largest subunit [Lucidina biplagiata]
          Length = 1175

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 420/1228 (34%), Positives = 628/1228 (51%), Gaps = 148/1228 (12%)

Query: 17   LGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPSK 75
            +  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S 
Sbjct: 17   ISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSG 76

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT 135
            + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +      
Sbjct: 77   EVENPPRYL-LKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLTYSAPLYVDI------ 128

Query: 136  QKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCD 189
                T    K G      +E +  +     IG+IP+M++S  C + G+      E  +C 
Sbjct: 129  ----TKTIVKDG------EEPIETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLMELNECP 178

Query: 190  FDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVRLV 242
             D GGYFII G+EKV +AQE++    ++V        A+KSE       + R    + + 
Sbjct: 179  LDPGGYFIINGSEKVLIAQEKMATNTVYVFAMKDGKYAFKSEIRSCLEHSSRPTSTLWVN 238

Query: 243  DMSK----FEDIKGGEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSIL 297
             M++     +    G++++++  ++  EIP+ ++F ALG  +D++I+  I +  ED  ++
Sbjct: 239  MMARGGQAIKKAAIGQRIIAILPYIKQEIPVMVVFRALGFVADRDILEHIIYDFEDPEMM 298

Query: 298  NILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEECM 343
             ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C 
Sbjct: 299  EMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFC- 357

Query: 344  NTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVH 403
                        +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL       
Sbjct: 358  ----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLL------- 400

Query: 404  IAHARKRMAKALQRD--LYGDRTV-RPIEYYLDASI----LTNGLSRAFSTGAWSHPFKR 456
             A   + + K L ++  +Y  + + R  ++ LD +I    +T+GL  + +TG W    K 
Sbjct: 401  -AFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLDLAIKTKLITDGLRYSLATGNWGDQKKA 459

Query: 457  TERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGEN 516
             +  +G+   L R     TL  LRR    +   GK+   R  H + WG IC   TP+G  
Sbjct: 460  HQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAA 519

Query: 517  CGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKD 575
             GLVKNL +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D
Sbjct: 520  VGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRD 579

Query: 576  SLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN--------- 625
                +S LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VEN         
Sbjct: 580  PEQLMSTLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGQLLLKKRH 639

Query: 626  MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCEL 685
            +  +K  E  NY +Q L+  G++E + T EEE    A     L ++ +      +THCE+
Sbjct: 640  IDMLKEREYNNYGWQVLVAQGVVEYIDTLEEETVMIAISPDDLRQEKDYAYCTTYTHCEI 699

Query: 686  DMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRP 745
              + +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +P
Sbjct: 700  HPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKP 758

Query: 746  LFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMF 805
            L  T   +            L   EL  G N+IVA+  + GYNQEDS+++N +++ERG F
Sbjct: 759  LVTTRSME-----------YLRFRELPAGINSIVAIACYTGYNQEDSVILNASAVERGFF 807

Query: 806  RSEHIRSYK----AEVDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGA 858
            RS   RSYK      + ++E Q +   R++   M N           D LDDDG    G 
Sbjct: 808  RSVFYRSYKDSECKRIGDQEEQFEKPTRQTCQGMRN--------ALYDKLDDDGIISPGI 859

Query: 859  NLQSGDIVIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNF 903
             +   D+VIGK                  S  D S  L+++E G+V +V+L+ N +G  F
Sbjct: 860  RVSGDDVVIGKTMTLPENDDELDGTTKKFSKRDASTFLRNSETGVVDQVMLTLNSEGYKF 919

Query: 904  SVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTP 963
              + +R VR P +GDKF+S HGQKG  G    QE+  FT +GI PDI+INPHA PSR T 
Sbjct: 920  CKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMIFTCEGITPDIIINPHAIPSRMTI 979

Query: 964  GQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGR 1022
            G L+E   GK   +  KG        ATPF    +V  I+  L   G+   G E +Y+G 
Sbjct: 980  GHLIECIQGK--VSANKGEIGD----ATPFNDAVNVQKISTLLQEYGYHLRGNEVMYNGH 1033

Query: 1023 TGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1082
            TG  + + IF+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERD
Sbjct: 1034 TGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 1093

Query: 1083 CLIAHGAAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSG 1140
            C I+HGAA  L ERLF +SD Y++HIC  C    +AN+               C+ C + 
Sbjct: 1094 CQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRNNTFE---------CKGCKNK 1144

Query: 1141 DDIVKANVPYGAKLLCQELFSMGITLKF 1168
              I +  +PY AKLL QEL SM I  + 
Sbjct: 1145 TQISQIRLPYAAKLLFQELMSMNIAPRL 1172


>gi|170042980|ref|XP_001849183.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Culex
            quinquefasciatus]
 gi|167866385|gb|EDS29768.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Culex
            quinquefasciatus]
          Length = 1176

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 417/1220 (34%), Positives = 624/1220 (51%), Gaps = 130/1220 (10%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPS 74
            ++  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       +
Sbjct: 17   EISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELTAEAQHTT 76

Query: 75   KKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVY 134
               E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +     
Sbjct: 77   GDIETPTRYV-LKFDQIYLSKPTHWEKDGSPS-PMMPNEARLRNLTYSAPLYVDI----- 129

Query: 135  TQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDC 188
                 T  K   G++       +  +     IG+IP+M++S  C +  +      E  +C
Sbjct: 130  -----TKTKIVEGQDP------VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNEC 178

Query: 189  DFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVRL 241
              D GGYFII G+EKV +AQE++    ++V +      AYKSE       + R    +  
Sbjct: 179  PLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKSEIRSCLEHSSRPTSTLWC 238

Query: 242  VDMSKF-EDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
              M++  + IK    G++V+++  ++  EIPI I+F ALG  +D++I+  I +  +D  +
Sbjct: 239  NMMARGGQSIKKSAIGQRVIAILPYVKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 298

Query: 297  LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
            + ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C
Sbjct: 299  MEMVKPSLDEAFVVQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFC 358

Query: 343  MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                         +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL    + 
Sbjct: 359  -----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 407

Query: 403  HIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISG 462
               +  K +    Q+ +   +    +E  +   I+T+GL  + +TG W    K  +  +G
Sbjct: 408  LFKNLLKEVRMYAQKFIDRGKDFN-LELAIKTKIITDGLRYSLATGNWGDQKKAHQARAG 466

Query: 463  IVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKN 522
            +   L R     TL  LRR    +   GK+   R  H + WG IC   TP+G   GLVKN
Sbjct: 467  VSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKN 526

Query: 523  LGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVS 581
            L +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    ++
Sbjct: 527  LALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMA 586

Query: 582  ELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKS 631
             LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VEN         +  +K 
Sbjct: 587  TLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLRKNHVDMLKE 646

Query: 632  LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLL 691
             +  NY +Q L+  G++E + T EEE    A     L +D E      +THCE+  + +L
Sbjct: 647  RDYNNYGWQVLVASGVVEYIDTLEEETVMIAMTPYDLKQDKEYAYCTTYTHCEIHPAMIL 706

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T  
Sbjct: 707  GVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRS 765

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
             +            L   EL  G N+IVA+  + GYNQEDS+++N +++ERG FRS   R
Sbjct: 766  ME-----------YLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYR 814

Query: 812  SYK----AEVDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGD 864
            SYK     ++ ++E Q +   R++   M N           D LDDDG    G  +   D
Sbjct: 815  SYKDSESKKIGDQEEQFEKPNRQTCQGMRN--------ALYDKLDDDGIIAPGLRVSGDD 866

Query: 865  IVIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLR 909
            +VIGK                  S  D S  L+++E G+V +V+L+ N +G  F  + +R
Sbjct: 867  VVIGKTITLPETDDDLDGTTKRYSKRDGSTFLRNSETGIVDQVMLTLNSEGYKFCKIRVR 926

Query: 910  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEA 969
             VR P +GDKF+S HGQKG  G    QE+ PFT +G+ PDI+INPHA PSR T G L+E 
Sbjct: 927  SVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIEC 986

Query: 970  ALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVR 1028
              GK    LG     G    ATPF    +V  I+  L   G+   G E +Y+G TG  + 
Sbjct: 987  IQGK----LGSN--KGEIGDATPFNDAVNVQKISTFLQEYGYQLRGNEVMYNGHTGRKIN 1040

Query: 1029 SLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG 1088
            + +F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC I+HG
Sbjct: 1041 AQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHG 1100

Query: 1089 AAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANV 1148
            AA  L ERLF +SD Y++H+C  C  +A    R            C+ C +   I +  +
Sbjct: 1101 AAQFLRERLFEVSDPYRIHVCNFCGLIAIANMR-------NNTFECKGCKNKTQISQVKL 1153

Query: 1149 PYGAKLLCQELFSMGITLKF 1168
            PY AKLL QEL SM I  + 
Sbjct: 1154 PYAAKLLFQELMSMNIAPRL 1173


>gi|297673503|ref|XP_002814800.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
            [Pongo abelii]
 gi|410038417|ref|XP_003950400.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Pan
            troglodytes]
          Length = 1167

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 429/1241 (34%), Positives = 624/1241 (50%), Gaps = 160/1241 (12%)

Query: 2    DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-D 60
            D DD+  T      DL +E     C     S+F+E GLV  Q++S++EFI+  +Q+   D
Sbjct: 4    DEDDDEITP-----DLWQEA----CWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 54

Query: 61   SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
            +    +       S + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+T
Sbjct: 55   APPIDLQAEAQHASGEVEEPPRYL-LKFEQIYLSKPTHWERDGAPS-PMMPNEARLRNLT 112

Query: 121  YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
            YS+ + V +          T    K G EQ      L  +     IG+IP+M++S  C +
Sbjct: 113  YSAPLYVDI----------TKTVIKEGEEQ------LQTQHQKTFIGKIPIMLRSTYCLL 156

Query: 181  KGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR 234
             G+      E  +C  D GGYFII G+EKV +AQE++    ++V        AY  E + 
Sbjct: 157  NGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRS 216

Query: 235  N-------------RLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDK 281
                           ++ R    +K   I G   V ++ ++  E+PI I+F ALG  SD+
Sbjct: 217  CLENSSRPTSTIWVSMLARGGQGAKKSAI-GQRIVATLPYIKQEVPIIIVFRALGFVSDR 275

Query: 282  EIVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKL 327
            +I+  I +  ED  ++ ++  S+ +A      N    F   R A         +KY  ++
Sbjct: 276  DILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEV 335

Query: 328  IKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNK 387
            ++    P    ++ C             +KA FLGYMV  LL A  GRR+ D+RD + NK
Sbjct: 336  LQKEMLPHVGVSDFC-----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNK 384

Query: 388  RLELAGELLERELKVHIAHARKRMAKALQRD--LYGDRTVR-----PIEYYLDASILTNG 440
            RL+LAG LL        A   + M K L ++  +Y  + +       +E  +   I+++G
Sbjct: 385  RLDLAGPLL--------AFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDG 436

Query: 441  LSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHP 500
            L  + +TG W    K  +  +G+   L R     TL  LRR    +   GK+   R  H 
Sbjct: 437  LKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHN 496

Query: 501  SHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGG 559
            + WG +C   TP+G   GLVKNL +   +S  S   PI E L    ME L + +  ++  
Sbjct: 497  TLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIAD 556

Query: 560  KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILR 618
              K+FV+G W+G+ KD    ++ LR+ RR+ ++  ++V + RD  + E+RI+ DAGRI R
Sbjct: 557  ATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICR 616

Query: 619  PLLVVE---------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLL 669
            PLL+VE         ++ ++K  E  NY++Q L+  G++E + T EEE    A       
Sbjct: 617  PLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD--- 673

Query: 670  KDIEDKKPI---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTT 726
             D+++K+      +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   T
Sbjct: 674  -DLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYIT 731

Query: 727  NPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLG 786
            N  +R+DTL+H L+YPQ+PL  T   +            L   EL  G N+IVA+  + G
Sbjct: 732  NFHVRMDTLAHVLYYPQKPLVTTRSME-----------YLRFRELPAGINSIVAIASYTG 780

Query: 787  YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGR-- 844
            YNQEDS++MNR++++RG FRS   RSYK        Q  ++  D    F K   +  +  
Sbjct: 781  YNQEDSVIMNRSAVDRGFFRSVFYRSYKE-------QESKKGFDQEEVFEKPTRETCQGM 833

Query: 845  ----VDSLDDDGFPFIGANLQSGDIVIGKYAD---------------SGADHSIKLKHTE 885
                 D LDDDG    G  +   D++IGK                  +  D S  L+ +E
Sbjct: 834  RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE 893

Query: 886  RGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQG 945
             G+V +V+++ N +G  F  + +R VR P +GDKF+S HGQKG  G    QE+ PFT +G
Sbjct: 894  TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG 953

Query: 946  IVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQ 1004
            I PDI+INPHA PSR T G L+E   GK   +  KG        ATPF    +V  I+  
Sbjct: 954  ITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGEIGD----ATPFNDAVNVQKISNL 1007

Query: 1005 LHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQP 1064
            L   G+   G E LY+G TG  + S IFIGPT+YQRL HM +DK+  R  GP+  L RQP
Sbjct: 1008 LSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQP 1067

Query: 1065 VADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVG 1124
            +  R R GG++FGEMERDC IAHGAA  L ERLF  SD YQ+H+C  C  +A        
Sbjct: 1068 MEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAI------- 1120

Query: 1125 GGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
               +     CR C +   I    +PY  KLL QEL SM I 
Sbjct: 1121 ANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIA 1161


>gi|324120620|dbj|BAJ78701.1| RNA polymerase II second largest subunit [Galloisiana yuasai]
          Length = 1175

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 411/1212 (33%), Positives = 623/1212 (51%), Gaps = 116/1212 (9%)

Query: 17   LGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPSK 75
            +  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S 
Sbjct: 17   ISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSG 76

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT 135
            + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +   +  
Sbjct: 77   EIENPPRYL-LKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLTYSAPLYVDITKTILK 134

Query: 136  QKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCD 189
            +                 +E +  +     IG+IP+M++S  C + G+      E  +C 
Sbjct: 135  EN----------------EEPVETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECP 178

Query: 190  FDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVRLV 242
             D GGYFII G+EKV +AQE++    ++V +      A+K+E       + R    + + 
Sbjct: 179  LDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKFAFKAEIRSCLEHSSRPTSTLWVN 238

Query: 243  DMSKF-EDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSIL 297
             M++  + IK    G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  ++
Sbjct: 239  MMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMM 298

Query: 298  NILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEECM 343
             ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C 
Sbjct: 299  EMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFC- 357

Query: 344  NTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVH 403
                        +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL    +  
Sbjct: 358  ----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGL 407

Query: 404  IAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGI 463
              +  K +    Q+ +   +    +E  +   I+T+GL  + +TG W    K  +  +G+
Sbjct: 408  FKNLMKEVRMYAQKFIDRGKDFN-LELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 466

Query: 464  VANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNL 523
               L R     TL  LRR    +   GK+   R  H + WG IC   TP+G   GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 526

Query: 524  GVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSE 582
             +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    ++ 
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 586

Query: 583  LRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVE---------NMGKIKSL 632
            LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+V+         ++  +K  
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVDGGNLLLKKRHIDMLKER 646

Query: 633  EGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLG 692
            E  NY +Q L+  G++E + T EEE    A     L +D E      +THCE+  + +LG
Sbjct: 647  EYNNYGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQDKEYAYCTTYTHCEIHPAMILG 706

Query: 693  LSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMIS 752
            +   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T   
Sbjct: 707  VCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSM 765

Query: 753  DCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRS 812
            +            L   EL  G N+IVA+  + GYNQEDS++MN +++ERG FRS   RS
Sbjct: 766  E-----------YLRFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRS 814

Query: 813  YKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD 872
            YK + ++K +  +    +          +    D LDDDG    G  +   D+VIGK   
Sbjct: 815  YK-DAESKRIGDQEEQFEKPTRLTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTIT 873

Query: 873  --------SGA-------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLG 917
                     GA       D S  L+++E G+V +V+L+ N +G  F  + +R VR P +G
Sbjct: 874  LPENDDELEGATKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIG 933

Query: 918  DKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAA 977
            DKF+S HGQKG  G    QE+ PFT +G+ PDI+INPHA PSR T G L+E   GK   +
Sbjct: 934  DKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGK--VS 991

Query: 978  LGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPT 1036
              KG        ATPF    +V  I+  L   G+   G E +++G TG  + + IF+GPT
Sbjct: 992  SNKGEIGD----ATPFNDAVNVQKISTLLQEYGYQLRGNEIMFNGHTGRKISAQIFLGPT 1047

Query: 1037 FYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHER 1096
            +YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC IAHGAA  L ER
Sbjct: 1048 YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRER 1107

Query: 1097 LFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLC 1156
            LF +SD Y++HIC  C  +A      +   R      C+ C +   I +  +PY AKLL 
Sbjct: 1108 LFEVSDPYRIHICNFCGIIA------IANMRN-NTFECKGCKNKTQISQVKLPYAAKLLF 1160

Query: 1157 QELFSMGITLKF 1168
            QEL +M I  + 
Sbjct: 1161 QELMAMNIAPRL 1172


>gi|298705314|emb|CBJ49004.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1277

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 414/1201 (34%), Positives = 611/1201 (50%), Gaps = 120/1201 (9%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            ++F+E GLV  Q++S++EF+++ + +   S GE  + P        +   R   + FGQV
Sbjct: 114  AYFSEKGLVRQQLDSFDEFLQSTMHELVSSAGEIKITPELQYMPGQDTVRRTFQINFGQV 173

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             L KP+    +G     MFP  ARL+N+TY+S +   +  + Y       D+ +   E  
Sbjct: 174  YLAKPTAREKDGSLT-SMFPHEARLRNLTYNSPLYCDISCKTYEAD--VGDRSQEDGEGL 230

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
              +E   +      +G +P+M++S  C +         E G+C +D GGYF+I G+EKV 
Sbjct: 231  EAEEERENPKE--FLGWVPIMLRSSFCVLVNRTDKELTELGECIYDQGGYFVINGSEKVL 288

Query: 206  VAQEQI------CLKRLWVSNSMGWTVAYKS--ENKRNRLIVRLVDM----SKFEDIKGG 253
            +A E++      C K+   S    WT   +S  +N         + M    ++   + GG
Sbjct: 289  IANERMSTNHVYCFKKRQPSK-FTWTSEIRSFVDNSGRPPSSMFLQMYAKGTQHSKVNGG 347

Query: 254  EKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDAD----- 308
                 + ++ T++P+ ++F ALG ++DK I+  I +   D  ++     S+ +AD     
Sbjct: 348  HIRAQLPYIRTDVPVVLVFRALGYTNDKAILEHIVYDFSDTDMMEKFRPSLEEADVIQNQ 407

Query: 309  --------NKCDEFRKGRNA-LKYVDKLIKGTTFPP---GESTEECMNTYLFPSLHGTKQ 356
                     +      GRN  + Y   L++    P    G  TE               +
Sbjct: 408  VVAQDFIGKRGSAVNVGRNERINYAKGLLQREFLPHVGIGAGTE--------------AK 453

Query: 357  KARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQ 416
            K  FLGYMV  LL    GR + D+RD +  KRL+LAG LL    +       + + K LQ
Sbjct: 454  KVFFLGYMVHKLLMCSLGRLEEDDRDHYGKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQ 513

Query: 417  RDL-YGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQT 475
              L  G + V  +   + +  +T+GL  + +TG W    K+T   +G+   L R      
Sbjct: 514  LCLDKGTQFV--VGTAIKSQFITDGLKYSLATGNWGD--KKTATKAGVSQVLNRLTYASA 569

Query: 476  LVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-L 534
            L  LRR    +   GK    R  H +HWG IC   TP+G+  GLVKNL +   +S    L
Sbjct: 570  LSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSL 629

Query: 535  EPIFEQLFNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL 592
             PI E L    ME L + A + +      KVFV+G+W+GV +D    V  L  +RR  ++
Sbjct: 630  SPILEFLEEWAMENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDI 689

Query: 593  PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHG 646
              +V + RD    E+R++ DAGR+ RPL VVEN         I  L   NY +  L+  G
Sbjct: 690  DVEVSVVRDIKGRELRLYTDAGRVCRPLFVVENNRLRIRKKHINDLHDPNYGWTNLMQQG 749

Query: 647  IIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIK--FTHCELDMSFLLGLSCGIIPFANHD 704
            ++E + TEEEE    A   K    D+E+       +THCE+  S +LG+   IIPF +H+
Sbjct: 750  VVEYIDTEEEETTMVAMEPK----DLEESGGYSSTYTHCEIHPSMILGVCASIIPFPDHN 805

Query: 705  HARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNH 764
             + R  YQS     QA+G   +N  +R+DTL+H L YP++PL  T   +        H H
Sbjct: 806  QSPRNTYQSAM-GKQAMGIYASNYQLRMDTLAHVLHYPEKPLVTTRAME--------HLH 856

Query: 765  ILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSY----KAEVDNK 820
                 EL +G N IV + V+ GYNQEDSL+MN+++++RG+FRS   R+     KA     
Sbjct: 857  FR---ELPSGFNVIVGIMVYSGYNQEDSLIMNQSAVDRGLFRSSFFRTLNDQEKAGRGMG 913

Query: 821  EMQV-KRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD------- 872
            +M V    S +          K G  D L++DG    G  +   D++IGK          
Sbjct: 914  DMAVLSAESFERPARENTAGMKHGNYDKLEEDGLVAPGTRVSGTDVLIGKTTPLGGGVAG 973

Query: 873  --------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMH 924
                    S  D S  ++  E G+V +V+L++N +G  F  V +R VR P +GDKF+S H
Sbjct: 974  VTGGPGHRSKKDSSTVMRSHEDGIVDRVMLTTNQEGFKFCKVRIRNVRVPQIGDKFASRH 1033

Query: 925  GQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICS 984
            GQKG +G    QE+ P++I GIVPDI++NPHA PSR T  QL+E  LGK       G+ +
Sbjct: 1034 GQKGTIGMTYRQEDMPWSIDGIVPDIIVNPHAIPSRMTIAQLIECLLGK------VGVLT 1087

Query: 985  GLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHM 1044
            G +  ATPF   +V  ++  LH+ GF K G E +Y G TG M+ + +F+GPTFYQRL H+
Sbjct: 1088 GTEGDATPFTDVTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKVFLGPTFYQRLKHL 1147

Query: 1045 SEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSY 1104
             +DK+  R+ GPV  LTRQP+  R R GG++ GEMERDCLI+HG A  L +RLF  SD+Y
Sbjct: 1148 VDDKIHSRSRGPVMNLTRQPMEGRGRDGGLRMGEMERDCLISHGCANFLRDRLFINSDAY 1207

Query: 1105 QMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
            ++H+C KC  +A      V   RK+    CR C    D+ + +VPY  KLL QEL +M I
Sbjct: 1208 RVHVCDKCGLIA------VANLRKMSFE-CRGCKGKSDVSQIHVPYACKLLFQELMAMCI 1260

Query: 1165 T 1165
             
Sbjct: 1261 A 1261


>gi|324120636|dbj|BAJ78709.1| RNA polymerase II second largest subunit [Zorotypus sp. 154-1]
          Length = 1173

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 417/1219 (34%), Positives = 625/1219 (51%), Gaps = 148/1219 (12%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPSKKGEGEWRYA 84
            C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       + + E   RY 
Sbjct: 24   CWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIELQAEAQHTTGEIETPPRYL 83

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKF 144
             ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +       K +  D  
Sbjct: 84   -LKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLTYSAPLYVDIT------KTIVRDG- 134

Query: 145  KTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFII 198
                     ++ +  +     IG+IP+M++S  C + G+      E  +C  D GGYFII
Sbjct: 135  ---------EDPIEAQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFII 185

Query: 199  KGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVRLVDMSKF-EDI 250
             G+EKV +AQE++    ++V +      AYKSE       + R    + +  M++  + I
Sbjct: 186  NGSEKVLIAQEKMATNTVYVFSMKDGKYAYKSEIRSCLEHSSRPTSTLWVNMMARGGQSI 245

Query: 251  KG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHD 306
            K    G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  ++ ++  S+ +
Sbjct: 246  KKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDE 305

Query: 307  A-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEECMNTYLFPSLH 352
            A      N    F   R A         +KY  ++++    P    ++ C          
Sbjct: 306  AFVIQEQNVALNFIGSRGARPGVTREKRIKYAKEILQKEMLPHVGVSDFC---------- 355

Query: 353  GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMA 412
               +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL        A   + + 
Sbjct: 356  -ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLL--------AFLFRGLF 406

Query: 413  KALQRD--LYGDRTVR-----PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVA 465
            K L ++  LY  + +       +E  +   I+T+GL  + +TG W    K  +  +G+  
Sbjct: 407  KNLMKEVRLYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQ 466

Query: 466  NLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV 525
             L R     TL  LRR    +   GK+   R  H + WG IC   TP+G   GLVKNL +
Sbjct: 467  VLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLAL 526

Query: 526  TGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELR 584
               +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    ++ LR
Sbjct: 527  MAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLR 586

Query: 585  RKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKSLEG 634
            + RR  ++  ++V + RD    E+RI+ DAGRI RPLL+VEN         +  +K  E 
Sbjct: 587  KLRREMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKRHIDMLKDREY 646

Query: 635  KNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLS 694
             NY +Q L+  G++E + T EEE    A     L +D E      +THCE+  + +LG+ 
Sbjct: 647  NNYGWQVLVSSGLVEYIDTLEEETVMIAMSPDDLRQDKEYAYCTTYTHCEIHPAMILGVC 706

Query: 695  CGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDC 754
              IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T   + 
Sbjct: 707  ASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSME- 764

Query: 755  LGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYK 814
                       L   EL  G N+IVA+  + GYNQEDS+++N +++ERG FRS   RSYK
Sbjct: 765  ----------YLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFFRSYK 814

Query: 815  ----AEVDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVI 867
                  + ++E Q +   R++   M N           D LDDDG    G  +   D+VI
Sbjct: 815  DAESKRIGDQEEQFEKPNRQTCQGMRN--------ALYDKLDDDGIISPGIRVSGDDVVI 866

Query: 868  GKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVR 912
            GK                  +  D S  L+++E G+V +V+L+ N +G  F  + +R VR
Sbjct: 867  GKTMTLHETDDELEGTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 926

Query: 913  SPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALG 972
             P +GDKF+S HGQKG  G    QE+ PFT +G+ PDI+INPHA PSR T G L+E   G
Sbjct: 927  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQG 986

Query: 973  KGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLI 1031
            K   +  KG        ATPF    +V  I+  L   G+   G E +Y+G TG  + + I
Sbjct: 987  K--VSSNKGEIGD----ATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQI 1040

Query: 1032 FIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAA 1091
            F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC I+HGAA 
Sbjct: 1041 FLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQ 1100

Query: 1092 NLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVP 1149
             L ERLF +SD Y++H+C  C    +AN+               C+ C +   I +  +P
Sbjct: 1101 FLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---------CKGCKNKTQISQIRLP 1151

Query: 1150 YGAKLLCQELFSMGITLKF 1168
            Y AKLL QEL +M I  + 
Sbjct: 1152 YAAKLLFQELMAMNIAPRL 1170


>gi|452982910|gb|EME82668.1| hypothetical protein MYCFIDRAFT_136855 [Pseudocercospora fijiensis
            CIRAD86]
          Length = 1248

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 419/1273 (32%), Positives = 635/1273 (49%), Gaps = 176/1273 (13%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYAS 85
            C     SFF+  GLVS Q++S++EF    +Q+  D     +++                 
Sbjct: 18   CWSVIHSFFDSKGLVSQQLDSFDEFASTTMQEIVDETPAIVIDQNVAADDDDGLNMPIVK 77

Query: 86   MRF----GQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTS 141
             R+    G +T+ + +   G+G     M+P  ARL+N+TYSS M + +       KR+  
Sbjct: 78   RRYIIELGVLTISQAAMTEGDGSTRA-MYPHEARLRNLTYSSPMFLNLT------KRMQL 130

Query: 142  DKFKTGREQYIQKEVLSD---------------------ETTN-IIIGRIPVMVKSDLCW 179
             + ++   Q  +  V  D                     ET + + IG++P+M+KS +C 
Sbjct: 131  ARERSAGGQMGENGVWIDPPNWDGVTVDTIWEEDPDNPPETKDQVFIGKLPIMLKSKICA 190

Query: 180  MKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-- 231
            ++         + +C FD GGYFII G+EKV +AQE+     + V    G      +E  
Sbjct: 191  LRNRSEQELYAQQECPFDQGGYFIINGSEKVLIAQERSAANIVQVFKKKGTPTPVVAELR 250

Query: 232  ---NKRNRLI----VRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIV 284
                K  RLI    V+LV+ +   +  G    +SV ++  +IPI I+F ALG+ SD++I+
Sbjct: 251  SAIEKGTRLISSMQVKLVNQAAHSNATGKTIKVSVPYIKVDIPIGIVFRALGIVSDEDIL 310

Query: 285  NLIDFTCEDCSILNILFAS------IHDADNKCDEFRKGRNA-------LKYVDKLIKGT 331
            N I    +D  +L +L         I D D   D   K  N        ++Y  ++++  
Sbjct: 311  NHI-VDRKDTQMLEMLKPCLEEAFVIQDRDGALDFIGKRGNQQGVKERRIRYAREIMQ-K 368

Query: 332  TFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLEL 391
             F P  S EE   T          +KA FLGYMV  LLQ   GR   D+RD F  KRL+L
Sbjct: 369  EFLPHISQEEGSET----------RKAFFLGYMVNRLLQCALGRTSEDDRDHFGKKRLDL 418

Query: 392  AGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWS 451
            AG L+ +  ++      K M + L R +   R    I   +  +I+T+GL    +TG W 
Sbjct: 419  AGPLMAQVFRLKFQQLVKEMKQYLHRCVETGREFN-ITLAVKTNIITSGLRYCLATGNWG 477

Query: 452  HPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLST 511
               K ++  +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   T
Sbjct: 478  DQKKASQSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAET 537

Query: 512  PDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWI 570
            P+G+ CGLVKNL +   V+      P+ + +   GM+ L +       G  KVF++G W+
Sbjct: 538  PEGQACGLVKNLSLMCYVTVGTPGFPLIDFMRQRGMDLLEEYDPVINPGATKVFLNGTWV 597

Query: 571  GVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-- 628
            GV +++      LR  RR+  L  +V I RD  + E+R+F DAGR+ RPL VV+N  +  
Sbjct: 598  GVHRNAGHLADTLRSLRRKGLLSFEVTIIRDVREREIRVFTDAGRVCRPLFVVDNRTEAP 657

Query: 629  ----------------------IKSLEGKN--------YTFQALLDHGIIELVGTEEEED 658
                                  +++LEG +        + ++ L+D G++E +  EEEE 
Sbjct: 658  NNKGSLVLDQTHLAKLAEDQDMLQNLEGVSEEEREKHIFGWKGLVDGGVVEYLDAEEEET 717

Query: 659  CCTAWGIKYLLKDIEDKKPIK-------------------------FTHCELDMSFLLGL 693
                  I    +D+E+ K ++                         +THCE+  + +LG+
Sbjct: 718  AM----ISMTPEDLEEHKAMRAGMPEEARDDPHRRIKQPPNPFVRTWTHCEIHPAMILGI 773

Query: 694  SCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISD 753
               IIPF +H+ + R  YQS     QA+G   TN ++R+DT+++ L+YPQ+PL  T   +
Sbjct: 774  CASIIPFPDHNQSPRNTYQS-AMGKQAMGVTLTNYNVRMDTMANVLYYPQKPLATTRSME 832

Query: 754  CLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSY 813
                        L   +L  GQNAIVA++ + GYNQEDS++MN++S++RG+FRS   R+Y
Sbjct: 833  -----------FLRFRDLPAGQNAIVAISCYSGYNQEDSVIMNQSSIDRGLFRSLFFRAY 881

Query: 814  KAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADS 873
              +     M V  +  +  V    ++ K G  D LD+DG    G+ +   D++IGK A  
Sbjct: 882  MDQEKRVGMSVVEQF-EKPVRADTMRMKQGTYDKLDEDGIISPGSRVSGDDVIIGKTAPM 940

Query: 874  GADH---------------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGD 918
              D                S  L+ TE G+V +V+L++N +G  F  V  R  + P +GD
Sbjct: 941  PPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNTEGLRFVKVRTRVTKVPQIGD 1000

Query: 919  KFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAL 978
            KF+S HGQKG +G    QE+ PFT  G+ PDI+INPHA PSR T   L+E  L K     
Sbjct: 1001 KFASRHGQKGTIGITYRQEDMPFTADGLTPDIIINPHAIPSRMTIAHLIECLLSK----- 1055

Query: 979  GKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFY 1038
              G   G +  ATPF   +V +I++ L   GF + G E +Y+G TG+ + + +F+GPT+Y
Sbjct: 1056 -VGALQGQEGDATPFTDVTVTSISQILADHGFQQRGFEVMYNGHTGKKLNAQVFLGPTYY 1114

Query: 1039 QRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLF 1098
            QRL HM +DK+  R  GP+  LTRQPV  R R GG++FGEMERDC+IAHGA+A L ERL 
Sbjct: 1115 QRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLL 1174

Query: 1099 TLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQE 1158
             +SD++++HIC  C  +  +         K +   CR C +   I +  +PY AKLL QE
Sbjct: 1175 DVSDAFRVHICEICGLMTPI------ASIKKQQFECRPCRNKTKIAQVIIPYAAKLLFQE 1228

Query: 1159 LFSMGITLKFDTE 1171
            L +M +  +  T+
Sbjct: 1229 LAAMNVATRMFTD 1241


>gi|339250694|ref|XP_003374332.1| DNA-directed RNA polymerase II subunit RPB2 [Trichinella spiralis]
 gi|316969378|gb|EFV53485.1| DNA-directed RNA polymerase II subunit RPB2 [Trichinella spiralis]
          Length = 1190

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 420/1236 (33%), Positives = 639/1236 (51%), Gaps = 149/1236 (12%)

Query: 6    NGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGET 65
            NG+++     D+  E  +  C     ++F+E GLV  Q++S++EFI+  +QK  +     
Sbjct: 33   NGYSN-----DISSEMWQEACWVVISAYFDEKGLVRQQLDSFDEFIQMSVQKLVEDSPPV 87

Query: 66   IVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRM 125
             ++   D   +G  E ++ S++F Q+ L KP+ +  +G     + P  ARL+N+TYS+ +
Sbjct: 88   EIQLE-DHGAQGLSETKF-SIKFEQIYLSKPTHWEKDGAPA-PLMPNEARLRNLTYSAPL 144

Query: 126  KVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK 185
             V +          T    K+  E  I K         + IG+IP+M++S  C +  + +
Sbjct: 145  YVDI----------TKTIAKSNEEPLIAK------YEKVFIGKIPIMLRSTYCLLNRLSE 188

Query: 186  GD------CDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-----NKR 234
             D      C  D GGYFII G+EKV +AQE++    ++V +      A+K+E        
Sbjct: 189  RDLTDLNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSLKDNKFAFKAECRSCLESS 248

Query: 235  NRLIVRL-VDM----------SKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEI 283
            +R    L V+M          +  + + G   V+++ ++  E+P+ ++F ALG  SD++I
Sbjct: 249  SRPTSTLWVNMYARGGGHGAANTKKQLMGQRIVVNLPYVKQELPVIVVFRALGFVSDRDI 308

Query: 284  VNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIK 329
            +  I +  +D  ++ ++  S+ +A      +    F   R           +KY  ++++
Sbjct: 309  LEHIVYDFDDAEMMEMVKPSLDEAFVIQEQSVALNFIGSRGVQPGITREKRVKYAREILQ 368

Query: 330  GTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRL 389
              T P    ++ C             +KA FLGYMV  LL A  GRR+ D+RD + NKRL
Sbjct: 369  KETLPHVGISDFC-----------ETKKAYFLGYMVHRLLLAAMGRRELDDRDHYGNKRL 417

Query: 390  ELAGEL-LERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTG 448
            +LAG L L + L   +    +R          GD     +E  +   ILT GL  + +TG
Sbjct: 418  DLAGPLGLFKNLLKEVKMVAQRYINKT-----GDFN---LELCVRTGILTKGLQYSLATG 469

Query: 449  AWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICF 508
             W    K  +  +G+   L R     TL  LRR    +   GK+   R  H + WG IC 
Sbjct: 470  NWGDQKKAHQTRAGVSQVLNRLTYAATLSHLRRLNSPIGREGKLAKPRQLHNTLWGMICP 529

Query: 509  LSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDG 567
              TP+G+  GLVKNL +   +S  S  EPI E L    ME L + A  ++    K+FV+G
Sbjct: 530  AETPEGQAVGLVKNLALMAYISVGSQQEPILEFLEEWSMETLEEVAPSAISATTKIFVNG 589

Query: 568  DWIGVCKDSLSFVSELRRKRRRKELP-TQVEIKRDELQSEVRIFMDAGRILRPLLVVENM 626
             W+G+ ++    ++ LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VE+ 
Sbjct: 590  AWVGIHREPQQLMATLRKLRRQMDIVVSEVSMVRDIRDREIRIYTDAGRICRPLLIVEDQ 649

Query: 627  ------GKIKSLEGKN----YTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKK 676
                    I++L+ +N    + +  L+ + I+E + T EEE    A        D++D+ 
Sbjct: 650  RLLLKKNHIENLKRRNESNGHGWSELVANSIVEYIDTMEEETIMLAM----TPDDLQDRG 705

Query: 677  P---IKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVD 733
                  +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G  TTN  +R+D
Sbjct: 706  VGYCDTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGIYTTNFHVRMD 764

Query: 734  TLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSL 793
            TL+H L+YPQ+PL  T   +            L   EL  G N+IVA+  + GYNQEDS+
Sbjct: 765  TLAHVLWYPQKPLVTTRSME-----------YLRFNELPAGINSIVAILSYTGYNQEDSV 813

Query: 794  VMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDS----LD 849
            +MN +S++RGMFRS   RSY+ +  ++E +     +++ +     Q   G  ++    LD
Sbjct: 814  IMNSSSIDRGMFRSIFYRSYRDQESSREAR-----NEETIEKPTRQICQGMRNAVYHKLD 868

Query: 850  DDGFPFIGANLQSGDIVIGKYA-------------DSGADHSIKLKHTERGMVQKVVLSS 896
            DDG    G  +   D++IGK                S  D S  L+ +E G+V +V+LS 
Sbjct: 869  DDGIVSPGTRVSGDDVIIGKTIMLEDTDDSSTTKRSSKKDASTFLRASETGIVDQVMLSV 928

Query: 897  NDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHA 956
            N DG  F  V +R +R P +GDKF+S HGQKG +G +  QE+ PFT +GI PDI+INPHA
Sbjct: 929  NADGNKFVKVRVRSIRIPQIGDKFASRHGQKGTIGMIYRQEDMPFTCEGITPDIIINPHA 988

Query: 957  FPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFA-TPSVDAITEQLHRAGFSKWGT 1015
             PSR T G L+E   GK  A  G+         ATPF  + +V  ++  L   G+   G 
Sbjct: 989  IPSRMTIGHLIECLQGKVSANRGE------IGDATPFNDSVNVQKVSSLLQEYGYHLRGN 1042

Query: 1016 ERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIK 1075
            E +Y G TG  + + +FIGPT+YQRL HM +DK+  R  GP+  + RQP+  R R GG++
Sbjct: 1043 EVMYSGFTGRKLNTQVFIGPTYYQRLKHMVDDKIHSRARGPLQMMARQPMEGRSRDGGLR 1102

Query: 1076 FGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPY-C 1134
            FGEMERDC IAHGAA  L ERLF +SD Y +++C+ C  +A    R         G Y C
Sbjct: 1103 FGEMERDCQIAHGAAHFLKERLFEVSDPYTVYVCKICGIIAIANSRT--------GHYEC 1154

Query: 1135 RICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
            R C +   I + N+PY  KLL QEL SM I  +  T
Sbjct: 1155 RTCRNKTKISRVNIPYACKLLFQELTSMCIAPRMKT 1190


>gi|194745991|ref|XP_001955468.1| GF16238 [Drosophila ananassae]
 gi|190628505|gb|EDV44029.1| GF16238 [Drosophila ananassae]
          Length = 1176

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 417/1221 (34%), Positives = 628/1221 (51%), Gaps = 134/1221 (10%)

Query: 17   LGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPSK 75
            +  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S 
Sbjct: 18   ISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSG 77

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT 135
            + E   R+ S++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +      
Sbjct: 78   EVETPPRF-SLKFEQIYLSKPTHWEKDGSPS-PMMPNEARLRNLTYSAPLYVDI------ 129

Query: 136  QKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCD 189
                T  K   G++       +  +     IG+IP+M++S  C +  +      E  +C 
Sbjct: 130  ----TKTKNVEGQDP------IETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECP 179

Query: 190  FDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR---------NRLIVR 240
             D GGYFII G+EKV +AQE++    ++V +      A+K+E +          + L V 
Sbjct: 180  LDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVN 239

Query: 241  LVDMSKFEDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
            ++     ++IK    G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  +
Sbjct: 240  MMARGS-QNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 298

Query: 297  LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
            + ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C
Sbjct: 299  MEMVKPSLDEAFVVQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFC 358

Query: 343  MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                         +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL    + 
Sbjct: 359  -----------ETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRG 407

Query: 403  HIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISG 462
               +  K +    Q+ +   +    +E  +  +I+T+GL  + +TG W    K  +  +G
Sbjct: 408  LFKNLMKEVRMYTQKFIDRGKDFN-LELAIKTNIITDGLRYSLATGNWGDQKKAHQARAG 466

Query: 463  IVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKN 522
            +   L R     TL  LRR    +   GK+   R  H + WG +C   TP+G   GLVKN
Sbjct: 467  VSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKN 526

Query: 523  LGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVS 581
            L +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    ++
Sbjct: 527  LALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMA 586

Query: 582  ELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKS 631
             LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VEN         +  +K 
Sbjct: 587  TLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKE 646

Query: 632  LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLL 691
             +  NY++Q L+  G++E + T EEE    A     L +D +      +THCE+  + +L
Sbjct: 647  RDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMIL 706

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T  
Sbjct: 707  GVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRS 765

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
             +            L   EL  G N+IVA+  + GYNQEDS+++N +++ERG FRS   R
Sbjct: 766  ME-----------YLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYR 814

Query: 812  SYKAEVDNKEMQVKRRSSDDMVNFGKIQS------KIGRVDSLDDDGFPFIGANLQSGDI 865
            SYK + +NK      R  D   NF K         +    D LDDDG    G  +   D+
Sbjct: 815  SYK-DSENK------RVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDV 867

Query: 866  VIGKYA---------DSGA------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQ 910
            VIGK           DS        D S  L+++E G+V +V+L+ N +G  F  + +R 
Sbjct: 868  VIGKTITLPENDDELDSNTKRFAKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS 927

Query: 911  VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA 970
            VR P +GDKF+S HGQKG  G    QE+ PFT +G+ PDI+INPHA PSR T G L+E  
Sbjct: 928  VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLAPDIIINPHAIPSRMTIGHLIECL 987

Query: 971  LGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRS 1029
             GK    LG     G    ATPF    +V  I+  L   G+   G E +Y+G TG  + +
Sbjct: 988  QGK----LGSN--KGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINA 1041

Query: 1030 LIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA 1089
             +F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC I+HGA
Sbjct: 1042 QVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGA 1101

Query: 1090 AANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKAN 1147
            A  L ERLF +SD Y++HIC  C    +AN+               C+ C +   I +  
Sbjct: 1102 AQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFE---------CKGCKNKTQISQVR 1152

Query: 1148 VPYGAKLLCQELFSMGITLKF 1168
            +PY AKLL QEL SM I  + 
Sbjct: 1153 LPYAAKLLFQELMSMNIAPRL 1173


>gi|195392246|ref|XP_002054770.1| RNA polymerase II 140kD subunit [Drosophila virilis]
 gi|194152856|gb|EDW68290.1| RNA polymerase II 140kD subunit [Drosophila virilis]
          Length = 1176

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 417/1221 (34%), Positives = 628/1221 (51%), Gaps = 134/1221 (10%)

Query: 17   LGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPSK 75
            +  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S 
Sbjct: 18   ISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSG 77

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT 135
            + E   R+ S++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +     T
Sbjct: 78   EVETPPRF-SLKFEQIYLSKPTHWEKDGSPS-PMMPNEARLRNLTYSAPLYVDI---TKT 132

Query: 136  QKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCD 189
            +     D  +T  ++               IG+IP+M++S  C +  +      E  +C 
Sbjct: 133  KNVEGMDPVETQHQK-------------TFIGKIPIMLRSTYCLLSQLTDRDLTELNECP 179

Query: 190  FDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR---------NRLIVR 240
             D GGYFII G+EKV +AQE++    ++V +      A+K+E +          + L V 
Sbjct: 180  LDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVN 239

Query: 241  LVDMSKFEDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
            ++     ++IK    G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  +
Sbjct: 240  MMARGS-QNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 298

Query: 297  LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
            + ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C
Sbjct: 299  MEMVKPSLDEAFVVQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFC 358

Query: 343  MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                         +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL    + 
Sbjct: 359  -----------ETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRG 407

Query: 403  HIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISG 462
               +  K +    Q+ +   +    +E  +  +I+T+GL  + +TG W    K  +  +G
Sbjct: 408  LFKNLMKEVRMYTQKFIDRGKDFN-LELAIKTNIITDGLRYSLATGNWGDQKKAHQARAG 466

Query: 463  IVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKN 522
            +   L R     TL  LRR    +   GK+   R  H + WG +C   TP+G   GLVKN
Sbjct: 467  VSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKN 526

Query: 523  LGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVS 581
            L +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    ++
Sbjct: 527  LALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMA 586

Query: 582  ELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKS 631
             LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VEN         +  +K 
Sbjct: 587  TLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGTLLLKKTHVEMLKE 646

Query: 632  LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLL 691
             +  NY++Q L+  G++E + T EEE    A     L +D +      +THCE+  + +L
Sbjct: 647  RDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMIL 706

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T  
Sbjct: 707  GVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRS 765

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
             +            L   EL  G N+IVA+  + GYNQEDS+++N +++ERG FRS   R
Sbjct: 766  ME-----------YLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYR 814

Query: 812  SYKAEVDNKEMQVKRRSSDDMVNFGKIQS------KIGRVDSLDDDGFPFIGANLQSGDI 865
            SYK + +NK      R  D   NF K         +    D LDDDG    G  +   D+
Sbjct: 815  SYK-DAENK------RVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDV 867

Query: 866  VIGKYA---------DSGA------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQ 910
            VIGK           DS        D S  L+++E G+V +V+L+ N +G  F  + +R 
Sbjct: 868  VIGKTITLPENDDELDSNTKRFAKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS 927

Query: 911  VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA 970
            VR P +GDKF+S HGQKG  G    QE+ PFT +G+ PDI+INPHA PSR T G L+E  
Sbjct: 928  VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLAPDIIINPHAIPSRMTIGHLIECL 987

Query: 971  LGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRS 1029
             GK    LG     G    ATPF    +V  I+  L   G+   G E +Y+G TG  + +
Sbjct: 988  QGK----LGSN--KGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINA 1041

Query: 1030 LIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA 1089
             +F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC I+HGA
Sbjct: 1042 QVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGA 1101

Query: 1090 AANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKAN 1147
            A  L ERLF +SD Y++HIC  C    +AN+               C+ C +   I +  
Sbjct: 1102 AQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFE---------CKGCKNKTQISQVR 1152

Query: 1148 VPYGAKLLCQELFSMGITLKF 1168
            +PY AKLL QEL SM I  + 
Sbjct: 1153 LPYAAKLLFQELMSMNIAPRL 1173


>gi|440639504|gb|ELR09423.1| DNA-directed RNA polymerase II subunit B [Geomyces destructans
            20631-21]
          Length = 1272

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 421/1273 (33%), Positives = 632/1273 (49%), Gaps = 165/1273 (12%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEG-EWRYA 84
            C     SFF   GLVS Q++S++EF+   +Q   +   +  ++    P   GE  + R  
Sbjct: 29   CWTVISSFFESKGLVSQQLDSFDEFVSTSMQDLINENSQLTLDQNNPPPVNGEPIQLRRY 88

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKF 144
             ++F  V + +P    G+G     +FP+ ARL+N+TYSS + + +  +V       +   
Sbjct: 89   EIKFRTVFIAEPMMTEGDGTTAR-LFPQEARLRNLTYSSALYIHLDKKVSIAVERPTPLN 147

Query: 145  KTGREQYIQKEVLSDETTNII-----------------------------IGRIPVMVKS 175
            +   ++  +     D  T ++                             IG++P+M+KS
Sbjct: 148  ELDDDEQAELAAGGDHPTKVVWEIEDQSMSQEEAAKLPANERPVTAEPFFIGKLPIMLKS 207

Query: 176  DLCWMKGVEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGW 224
              C +K ++        +C +D GGYF+I G+EKV +AQE+     + V      +   +
Sbjct: 208  KYCNLKDMDDDELYGWNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKPPPSPTPF 267

Query: 225  TVAYKSE-NKRNRLIVRLVDM--SKFEDIKG--GEKVLSVY-FLSTEIPIWILFFALGVS 278
                +S   K +RLI  L     SK +  +G  G+ + S   ++ ++IPI ++F ALGV 
Sbjct: 268  IAEIRSALEKGSRLISSLTIKLHSKGDTQRGSFGQTIKSTLPYIKSDIPIAVVFRALGVV 327

Query: 279  SDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES 338
            SD++I+N + +  +D  +L ++   I +A    D       AL ++ K  +    P  + 
Sbjct: 328  SDEDILNHVCYDRKDTQMLEMMKPCIEEAFVIQDR----EVALDFIGKRGQSLGVPRDKR 383

Query: 339  TE---ECMNTYLFPSLH----GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLEL 391
             +   + M   L P +        +KA FLGYMV  LLQ   GRR+ D+RD F  KRL+L
Sbjct: 384  IKHARDIMQKELLPHISQKEGSETRKAFFLGYMVHKLLQCALGRRETDDRDHFGKKRLDL 443

Query: 392  AGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWS 451
            AG LL +  +         + K +QR +   +   P    + A+ LTNGL  + +TG W 
Sbjct: 444  AGPLLAKLFRNLFRKLTGDLYKYIQRCVENKKEFNP-ALGIKATTLTNGLKYSLATGNWG 502

Query: 452  HPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLST 511
               K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   T
Sbjct: 503  DQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAET 562

Query: 512  PDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWI 570
            P+G+ CGLVKNL +   V+  +  EPI E +    ME L +          KVFV+G W+
Sbjct: 563  PEGQACGLVKNLALMCYVTVGTPSEPIIEFMIQRSMEVLEEYEPLRSPNATKVFVNGVWV 622

Query: 571  GVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVV------E 624
            GV +D    V  ++  RR   +  +V + RD    E +IF DAGR+ RPL VV      E
Sbjct: 623  GVHRDPSHLVETVQDLRRSSLISHEVSLIRDIRDREFKIFTDAGRVCRPLFVVDNKTDSE 682

Query: 625  NMGKI-------------------KSLEGKN----YTFQALLDHGIIELVGTEEEEDCCT 661
            N GK+                     LE K     Y FQ L++ G++E +  EEEE    
Sbjct: 683  NNGKLVFNAEHIRRLEDDLALPNNMDLEEKEERGYYGFQGLINDGVVEYLDAEEEETVM- 741

Query: 662  AWGIKYLLKDIED-----------------------KKP----IKFTHCELDMSFLLGLS 694
               I    +D+ED                        KP    + +THCE+  S +LG+ 
Sbjct: 742  ---IVMTPQDLEDGRKARQGYTVATGAEDSINARVQTKPKATSMVYTHCEIHPSMILGIC 798

Query: 695  CGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPL--FRTMIS 752
              IIPF +H+ + R  YQS     QA+G   TN   R+DT+++ L+YPQ+PL   R+M  
Sbjct: 799  ASIIPFPDHNQSPRNTYQS-AMGKQAMGVFLTNFDQRMDTMANILYYPQKPLAITRSM-- 855

Query: 753  DCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRS 812
                         L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+
Sbjct: 856  -----------EYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFYRA 904

Query: 813  YKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD 872
            Y  +     M V  +      +   ++ K G  D LDDDG    G  +   DI+IGK A 
Sbjct: 905  YHDQEKRIGMNVVEQFEKPFRS-DTLKLKHGTYDKLDDDGIVAPGVRISGEDIIIGKTAP 963

Query: 873  ---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLG 917
                           +  D S  L+ TE G+V +V++++N +G  F  V +R  + P +G
Sbjct: 964  LPPDAEELGQRTKSHTKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTKIPQIG 1023

Query: 918  DKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAA 977
            DKF+S HGQKG +G    QE+ PFT +G+VPD++INPHA PSR T   L+E  L K  + 
Sbjct: 1024 DKFASRHGQKGTIGITYRQEDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLSKVASL 1083

Query: 978  LGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTF 1037
            +GK      +  ATPF   +VD+++ +L   G+   G E +Y G TG  + + +F+GPT+
Sbjct: 1084 IGK------EGDATPFTDVTVDSVSSRLRDMGYQSRGFEVMYHGHTGRKLVAQVFLGPTY 1137

Query: 1038 YQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERL 1097
            YQRL HM +DK+  R  GP   LTRQPV  R R GG++FGEMERDC+I+HGA+A L ERL
Sbjct: 1138 YQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMISHGASAFLKERL 1197

Query: 1098 FTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQ 1157
            F +SD++++H+C  C  +  + +         +   CR C +   I + ++PY  KLL Q
Sbjct: 1198 FEVSDAFRVHVCDICGLMTPIAK------LNTQSFECRPCRNKTKISQVHIPYATKLLFQ 1251

Query: 1158 ELFSMGITLKFDT 1170
            EL SM I  +  T
Sbjct: 1252 ELASMNIAARMFT 1264


>gi|195109863|ref|XP_001999501.1| GI23040 [Drosophila mojavensis]
 gi|193916095|gb|EDW14962.1| GI23040 [Drosophila mojavensis]
          Length = 1176

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 417/1221 (34%), Positives = 628/1221 (51%), Gaps = 134/1221 (10%)

Query: 17   LGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPSK 75
            +  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S 
Sbjct: 18   ISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSG 77

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT 135
            + E   R+ S++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +     T
Sbjct: 78   EVETPPRF-SLKFEQIYLSKPTHWEKDGSPS-PMMPNEARLRNLTYSAPLYVDI---TKT 132

Query: 136  QKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCD 189
            +     D  +T  ++               IG+IP+M++S  C +  +      E  +C 
Sbjct: 133  KNVEGMDPVETQHQK-------------TFIGKIPIMLRSTYCLLSQLTDRDLTELNECP 179

Query: 190  FDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR---------NRLIVR 240
             D GGYFII G+EKV +AQE++    ++V +      A+K+E +          + L V 
Sbjct: 180  LDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVN 239

Query: 241  LVDMSKFEDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
            ++     ++IK    G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  +
Sbjct: 240  MMARGS-QNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 298

Query: 297  LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
            + ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C
Sbjct: 299  MEMVKPSLDEAFVVQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFC 358

Query: 343  MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                         +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL    + 
Sbjct: 359  -----------ETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRG 407

Query: 403  HIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISG 462
               +  K +    Q+ +   +    +E  +  +I+T+GL  + +TG W    K  +  +G
Sbjct: 408  LFKNLMKEVRMYTQKFIDRGKDFN-LELAIKTNIITDGLRYSLATGNWGDQKKAHQARAG 466

Query: 463  IVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKN 522
            +   L R     TL  LRR    +   GK+   R  H + WG +C   TP+G   GLVKN
Sbjct: 467  VSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKN 526

Query: 523  LGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVS 581
            L +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    ++
Sbjct: 527  LALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMA 586

Query: 582  ELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKS 631
             LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VEN         +  +K 
Sbjct: 587  TLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGTLLLKKTHVEMLKE 646

Query: 632  LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLL 691
             +  NY++Q L+  G++E + T EEE    A     L +D +      +THCE+  + +L
Sbjct: 647  RDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMIL 706

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T  
Sbjct: 707  GVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRS 765

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
             +            L   EL  G N+IVA+  + GYNQEDS+++N +++ERG FRS   R
Sbjct: 766  ME-----------YLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYR 814

Query: 812  SYKAEVDNKEMQVKRRSSDDMVNFGKIQS------KIGRVDSLDDDGFPFIGANLQSGDI 865
            SYK + +NK      R  D   NF K         +    D LDDDG    G  +   D+
Sbjct: 815  SYK-DAENK------RVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDV 867

Query: 866  VIGKYA---------DSGA------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQ 910
            VIGK           DS        D S  L+++E G+V +V+L+ N +G  F  + +R 
Sbjct: 868  VIGKTITLPENDDELDSNTKRFAKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS 927

Query: 911  VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA 970
            VR P +GDKF+S HGQKG  G    QE+ PFT +G+ PDI+INPHA PSR T G L+E  
Sbjct: 928  VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLAPDIIINPHAIPSRMTIGHLIECL 987

Query: 971  LGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRS 1029
             GK    LG     G    ATPF    +V  I+  L   G+   G E +Y+G TG  + +
Sbjct: 988  QGK----LGSN--KGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINA 1041

Query: 1030 LIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA 1089
             +F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC I+HGA
Sbjct: 1042 QVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGA 1101

Query: 1090 AANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKAN 1147
            A  L ERLF +SD Y++HIC  C    +AN+               C+ C +   I +  
Sbjct: 1102 AQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFE---------CKGCKNKTQISQVR 1152

Query: 1148 VPYGAKLLCQELFSMGITLKF 1168
            +PY AKLL QEL SM I  + 
Sbjct: 1153 LPYAAKLLFQELMSMNIAPRL 1173


>gi|4505941|ref|NP_000929.1| DNA-directed RNA polymerase II subunit RPB2 [Homo sapiens]
 gi|157822127|ref|NP_001099472.1| DNA-directed RNA polymerase II subunit RPB2 [Rattus norvegicus]
 gi|387849108|ref|NP_001248426.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
 gi|114594586|ref|XP_517275.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2 [Pan
            troglodytes]
 gi|296196473|ref|XP_002745851.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Callithrix
            jacchus]
 gi|297673513|ref|XP_002814803.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 4
            [Pongo abelii]
 gi|332238537|ref|XP_003268457.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Nomascus
            leucogenys]
 gi|348571889|ref|XP_003471727.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cavia
            porcellus]
 gi|354498860|ref|XP_003511530.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
            [Cricetulus griseus]
 gi|395851369|ref|XP_003798233.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
            [Otolemur garnettii]
 gi|402869719|ref|XP_003898895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
            [Papio anubis]
 gi|401012|sp|P30876.1|RPB2_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB2; AltName:
            Full=DNA-directed RNA polymerase II 140 kDa polypeptide;
            AltName: Full=DNA-directed RNA polymerase II subunit B;
            AltName: Full=RNA polymerase II subunit 2; AltName:
            Full=RNA polymerase II subunit B2
 gi|36122|emb|CAA45124.1| RNA polymerase II 140 kDa subunit [Homo sapiens]
 gi|254869|gb|AAB23139.1| RNA polymerase II second largest subunit, RNA polymerase B second
            largest subunit [human, HeLa cells, Peptide, 1174 aa]
 gi|33870592|gb|AAH23503.2| Polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Homo
            sapiens]
 gi|119625924|gb|EAX05519.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Homo
            sapiens]
 gi|149035168|gb|EDL89872.1| polymerase (RNA) II (DNA directed) polypeptide B (predicted) [Rattus
            norvegicus]
 gi|158260669|dbj|BAF82512.1| unnamed protein product [Homo sapiens]
 gi|168277428|dbj|BAG10692.1| DNA-directed RNA polymerase II subunit RPB2 [synthetic construct]
 gi|355749385|gb|EHH53784.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca fascicularis]
 gi|380783295|gb|AFE63523.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
 gi|383413177|gb|AFH29802.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
 gi|384941246|gb|AFI34228.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
 gi|410224966|gb|JAA09702.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
            troglodytes]
 gi|410261216|gb|JAA18574.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
            troglodytes]
 gi|410306896|gb|JAA32048.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
            troglodytes]
 gi|410306898|gb|JAA32049.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
            troglodytes]
 gi|410306900|gb|JAA32050.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
            troglodytes]
 gi|410350135|gb|JAA41671.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
            troglodytes]
          Length = 1174

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 429/1241 (34%), Positives = 624/1241 (50%), Gaps = 160/1241 (12%)

Query: 2    DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-D 60
            D DD+  T      DL +E     C     S+F+E GLV  Q++S++EFI+  +Q+   D
Sbjct: 11   DEDDDEITP-----DLWQEA----CWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 61   SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
            +    +       S + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+T
Sbjct: 62   APPIDLQAEAQHASGEVEEPPRYL-LKFEQIYLSKPTHWERDGAPS-PMMPNEARLRNLT 119

Query: 121  YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
            YS+ + V +          T    K G EQ      L  +     IG+IP+M++S  C +
Sbjct: 120  YSAPLYVDI----------TKTVIKEGEEQ------LQTQHQKTFIGKIPIMLRSTYCLL 163

Query: 181  KGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR 234
             G+      E  +C  D GGYFII G+EKV +AQE++    ++V        AY  E + 
Sbjct: 164  NGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRS 223

Query: 235  N-------------RLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDK 281
                           ++ R    +K   I G   V ++ ++  E+PI I+F ALG  SD+
Sbjct: 224  CLENSSRPTSTIWVSMLARGGQGAKKSAI-GQRIVATLPYIKQEVPIIIVFRALGFVSDR 282

Query: 282  EIVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKL 327
            +I+  I +  ED  ++ ++  S+ +A      N    F   R A         +KY  ++
Sbjct: 283  DILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEV 342

Query: 328  IKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNK 387
            ++    P    ++ C             +KA FLGYMV  LL A  GRR+ D+RD + NK
Sbjct: 343  LQKEMLPHVGVSDFC-----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNK 391

Query: 388  RLELAGELLERELKVHIAHARKRMAKALQRD--LYGDRTVR-----PIEYYLDASILTNG 440
            RL+LAG LL        A   + M K L ++  +Y  + +       +E  +   I+++G
Sbjct: 392  RLDLAGPLL--------AFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDG 443

Query: 441  LSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHP 500
            L  + +TG W    K  +  +G+   L R     TL  LRR    +   GK+   R  H 
Sbjct: 444  LKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHN 503

Query: 501  SHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGG 559
            + WG +C   TP+G   GLVKNL +   +S  S   PI E L    ME L + +  ++  
Sbjct: 504  TLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIAD 563

Query: 560  KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILR 618
              K+FV+G W+G+ KD    ++ LR+ RR+ ++  ++V + RD  + E+RI+ DAGRI R
Sbjct: 564  ATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICR 623

Query: 619  PLLVVE---------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLL 669
            PLL+VE         ++ ++K  E  NY++Q L+  G++E + T EEE    A       
Sbjct: 624  PLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD--- 680

Query: 670  KDIEDKKPI---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTT 726
             D+++K+      +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   T
Sbjct: 681  -DLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYIT 738

Query: 727  NPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLG 786
            N  +R+DTL+H L+YPQ+PL  T   +            L   EL  G N+IVA+  + G
Sbjct: 739  NFHVRMDTLAHVLYYPQKPLVTTRSME-----------YLRFRELPAGINSIVAIASYTG 787

Query: 787  YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGR-- 844
            YNQEDS++MNR++++RG FRS   RSYK        Q  ++  D    F K   +  +  
Sbjct: 788  YNQEDSVIMNRSAVDRGFFRSVFYRSYKE-------QESKKGFDQEEVFEKPTRETCQGM 840

Query: 845  ----VDSLDDDGFPFIGANLQSGDIVIGKYAD---------------SGADHSIKLKHTE 885
                 D LDDDG    G  +   D++IGK                  +  D S  L+ +E
Sbjct: 841  RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE 900

Query: 886  RGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQG 945
             G+V +V+++ N +G  F  + +R VR P +GDKF+S HGQKG  G    QE+ PFT +G
Sbjct: 901  TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG 960

Query: 946  IVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQ 1004
            I PDI+INPHA PSR T G L+E   GK   +  KG        ATPF    +V  I+  
Sbjct: 961  ITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGEIGD----ATPFNDAVNVQKISNL 1014

Query: 1005 LHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQP 1064
            L   G+   G E LY+G TG  + S IFIGPT+YQRL HM +DK+  R  GP+  L RQP
Sbjct: 1015 LSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQP 1074

Query: 1065 VADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVG 1124
            +  R R GG++FGEMERDC IAHGAA  L ERLF  SD YQ+H+C  C  +A        
Sbjct: 1075 MEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAI------- 1127

Query: 1125 GGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
               +     CR C +   I    +PY  KLL QEL SM I 
Sbjct: 1128 ANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIA 1168


>gi|195446199|ref|XP_002070673.1| GK12191 [Drosophila willistoni]
 gi|194166758|gb|EDW81659.1| GK12191 [Drosophila willistoni]
          Length = 1176

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 417/1221 (34%), Positives = 628/1221 (51%), Gaps = 134/1221 (10%)

Query: 17   LGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPSK 75
            +  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S 
Sbjct: 18   ISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSG 77

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT 135
            + E   R+ S++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +     T
Sbjct: 78   EVETPPRF-SLKFEQIYLSKPTHWEKDGSPS-PMMPNEARLRNLTYSAPLYVDI---TKT 132

Query: 136  QKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCD 189
            +     D  +T  ++               IG+IP+M++S  C +  +      E  +C 
Sbjct: 133  KNVEGLDPVETQHQK-------------TFIGKIPIMLRSTYCLLSQLTDRDLTELNECP 179

Query: 190  FDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR---------NRLIVR 240
             D GGYFII G+EKV +AQE++    ++V +      A+K+E +          + L V 
Sbjct: 180  LDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVN 239

Query: 241  LVDMSKFEDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
            ++     ++IK    G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  +
Sbjct: 240  MMARGS-QNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 298

Query: 297  LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
            + ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C
Sbjct: 299  MEMVKPSLDEAFVVQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFC 358

Query: 343  MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                         +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL    + 
Sbjct: 359  -----------ETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRG 407

Query: 403  HIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISG 462
               +  K +    Q+ +   +    +E  +  +I+T+GL  + +TG W    K  +  +G
Sbjct: 408  LFKNLMKEVRMYTQKFIDRGKDFN-LELAIKTNIITDGLRYSLATGNWGDQKKAHQARAG 466

Query: 463  IVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKN 522
            +   L R     TL  LRR    +   GK+   R  H + WG +C   TP+G   GLVKN
Sbjct: 467  VSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKN 526

Query: 523  LGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVS 581
            L +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    ++
Sbjct: 527  LALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMA 586

Query: 582  ELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKS 631
             LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VEN         +  +K 
Sbjct: 587  TLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKE 646

Query: 632  LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLL 691
             +  NY++Q L+  G++E + T EEE    A     L +D +      +THCE+  + +L
Sbjct: 647  RDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMIL 706

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T  
Sbjct: 707  GVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRS 765

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
             +            L   EL  G N+IVA+  + GYNQEDS+++N +++ERG FRS   R
Sbjct: 766  ME-----------YLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYR 814

Query: 812  SYKAEVDNKEMQVKRRSSDDMVNFGKIQS------KIGRVDSLDDDGFPFIGANLQSGDI 865
            SYK + +NK      R  D   NF K         +    D LDDDG    G  +   D+
Sbjct: 815  SYK-DAENK------RVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDV 867

Query: 866  VIGKYA---------DSGA------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQ 910
            VIGK           DS        D S  L+++E G+V +V+L+ N +G  F  + +R 
Sbjct: 868  VIGKTITLPENDDELDSNTKRFAKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS 927

Query: 911  VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA 970
            VR P +GDKF+S HGQKG  G    QE+ PFT +G+ PDI+INPHA PSR T G L+E  
Sbjct: 928  VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLAPDIIINPHAIPSRMTIGHLIECL 987

Query: 971  LGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRS 1029
             GK    LG     G    ATPF    +V  I+  L   G+   G E +Y+G TG  + +
Sbjct: 988  QGK----LGSN--KGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINA 1041

Query: 1030 LIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA 1089
             +F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC I+HGA
Sbjct: 1042 QVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGA 1101

Query: 1090 AANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKAN 1147
            A  L ERLF +SD Y++HIC  C    +AN+               C+ C +   I +  
Sbjct: 1102 AQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFE---------CKGCKNKTQISQVR 1152

Query: 1148 VPYGAKLLCQELFSMGITLKF 1168
            +PY AKLL QEL SM I  + 
Sbjct: 1153 LPYAAKLLFQELMSMNIAPRL 1173


>gi|324120626|dbj|BAJ78704.1| RNA polymerase II second largest subunit [Euconocephalus varius]
          Length = 1175

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 419/1229 (34%), Positives = 628/1229 (51%), Gaps = 148/1229 (12%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPS 74
            ++  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S
Sbjct: 16   EISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHIS 75

Query: 75   KKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVY 134
             + E    Y  ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +     
Sbjct: 76   GEIENPPHYL-LKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLTYSAPLYVDI----- 128

Query: 135  TQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDC 188
                 T    K G      +E +  +     IG+IP+M++S  C + G+      E  +C
Sbjct: 129  -----TKTIEKEG------EEPIETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNEC 177

Query: 189  DFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVRL 241
              D GGYFII G+EKV +AQE++    ++V +      AYK+E       + R    + +
Sbjct: 178  PLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKAEIRSCLEHSSRPTSTLWV 237

Query: 242  VDMSKF-EDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
              M++  + IK    G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  +
Sbjct: 238  NMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 297

Query: 297  LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
            + ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C
Sbjct: 298  MEMVKPSLDEAFVIQEQNVALNFIGSRGARPGVTKEKRIKYAREILQKEMLPHVGVSDFC 357

Query: 343  MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                         +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL      
Sbjct: 358  -----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLL------ 400

Query: 403  HIAHARKRMAKALQRD--LYGDRTVR-----PIEYYLDASILTNGLSRAFSTGAWSHPFK 455
              A   + + K L ++  +Y  + +       +E  +   I+T+GL  + +TG W    K
Sbjct: 401  --AFLFRGLFKTLMKEVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 458

Query: 456  RTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGE 515
                 +G+   L R     TL  LRR    +   GK+   R  H S WG IC   TP+G 
Sbjct: 459  AHMARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNSLWGMICPAETPEGA 518

Query: 516  NCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCK 574
              GLVKNL +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +
Sbjct: 519  AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 578

Query: 575  DSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVE--------- 624
            D    ++ LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VE         
Sbjct: 579  DPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVEGGSLLLKKK 638

Query: 625  NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCE 684
            ++  +K  E  NY +Q L+  G++E + T EEE    A     L +D E      +THCE
Sbjct: 639  HIDMLKEREYNNYGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQDKEYAYCTTYTHCE 698

Query: 685  LDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQR 744
            +  + +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +
Sbjct: 699  IHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHK 757

Query: 745  PLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGM 804
            PL  T   +            L   EL  G N+IVA+  + GYNQEDS+++N +++ERG 
Sbjct: 758  PLVTTRSME-----------YLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGF 806

Query: 805  FRSEHIRSYK----AEVDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIG 857
            FRS   RSYK      + ++E Q +   R++   M N           D LDDDG    G
Sbjct: 807  FRSVFFRSYKDAESKRIGDQEEQFEKPTRQTCQGMRN--------ALYDKLDDDGIISPG 858

Query: 858  ANLQSGDIVIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKN 902
              +   D+VIGK                  +  D S  L+++E G+V +V+L+ N +G  
Sbjct: 859  IRVSGDDVVIGKTIMLPETEDELEGTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYK 918

Query: 903  FSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQT 962
            F  + +R VR P +GDKF+S HGQKG  G    QE+ PFT +GI PDI+INPHA PSR T
Sbjct: 919  FCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMT 978

Query: 963  PGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDG 1021
             G L+E   GK   +  KG        ATPF    +V  I+  L   G+   G E +Y+G
Sbjct: 979  IGHLIECLQGK--VSSNKGEIGD----ATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNG 1032

Query: 1022 RTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMER 1081
             TG  + + +F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMER
Sbjct: 1033 HTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMER 1092

Query: 1082 DCLIAHGAAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDS 1139
            DC IAHGAA  L ERLF +SD Y++H+C  C    +AN+               C+ C +
Sbjct: 1093 DCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---------CKGCKN 1143

Query: 1140 GDDIVKANVPYGAKLLCQELFSMGITLKF 1168
               I +  +PY AKLL QEL +M I  + 
Sbjct: 1144 KTQISQVRLPYAAKLLFQELMAMNIAPRL 1172


>gi|291241363|ref|XP_002740582.1| PREDICTED: DNA directed RNA polymerase II polypeptide B-like
            [Saccoglossus kowalevskii]
          Length = 1175

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 423/1227 (34%), Positives = 630/1227 (51%), Gaps = 151/1227 (12%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPS 74
            ++  +  +  C     S+F+E GLV  Q++S++EFI+  +Q+   DS    +       +
Sbjct: 16   EITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPPIELQAEATHTT 75

Query: 75   KKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVY 134
             + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +     
Sbjct: 76   IEVEVPTRYI-LKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLTYSAPLYVDI----- 128

Query: 135  TQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDC 188
                 T    K G E    +E    +T    IG+IP+M++S  C + G+      E  +C
Sbjct: 129  -----TKTIVKEGDEP---QETQHQKT---FIGKIPIMLRSTYCLLSGLTDRDLTELNEC 177

Query: 189  DFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVRL 241
              D GGYFII G+EKV +AQE++    ++V        AY  E       + R    + +
Sbjct: 178  PLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLEHSSRPTSTLWV 237

Query: 242  VDMSK-----FEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
              M++      +   G   V ++ ++  EIPI I+F ALG  SD++I+  I +  +D  +
Sbjct: 238  HMMARGGQGVRKSAIGQRIVAALPYIRQEIPIMIVFRALGFVSDRDILEHIIYDFDDPEM 297

Query: 297  LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
            + ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C
Sbjct: 298  MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 357

Query: 343  MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                         +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL    + 
Sbjct: 358  -----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFR- 405

Query: 403  HIAHARKRMAKALQRDLYGDRTVRP-----IEYYLDASILTNGLSRAFSTGAWSHPFKRT 457
               H  K + K ++  +Y  + +       +E  +   I+T+GL  + +TG W    K  
Sbjct: 406  ---HLFKNLMKEVR--IYAQKFIDKGKDFNLELAIKTRIITDGLKYSLATGNWGEQKKAH 460

Query: 458  ERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENC 517
            +  +G+   L R     TL  LRR    +   GK+   R  H + WG IC   TP+G+  
Sbjct: 461  QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLARPRQLHNTLWGMICPAETPEGQAV 520

Query: 518  GLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDS 576
            GLVKNL +   +S  S   PI E L    ME L + A+ ++    K+FV+G W+G+ +D 
Sbjct: 521  GLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAASAINEATKIFVNGCWVGIHRDP 580

Query: 577  LSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVE---------NM 626
               ++ L++ RR+ ++  ++V + RD  + E+RI+ DAGRI RPLL+VE         ++
Sbjct: 581  EQLMNTLKKLRRQMDIIVSEVSMVRDIREKEIRIYTDAGRICRPLLIVEKQKLLLKKKHI 640

Query: 627  GKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKP---IKFTHC 683
              +K  E  NY++Q L+  G++E + T EEE    A        D+++K       +THC
Sbjct: 641  DMLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD----DLQEKGMGYCSTYTHC 696

Query: 684  ELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQ 743
            E+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YPQ
Sbjct: 697  EIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNYHVRMDTLAHVLYYPQ 755

Query: 744  RPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERG 803
            +PL  T   +            L   EL  G N+IVA+  + GYNQEDS++MN +++ERG
Sbjct: 756  KPLVTTRSME-----------YLRFRELPAGINSIVAIASYTGYNQEDSVIMNLSAVERG 804

Query: 804  MFRSEHIRSYKAE-----VDNKEMQVK--RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFI 856
             FRS   RSY+ +     +D +E+  K  R S   M        ++   D LDDDG    
Sbjct: 805  FFRSVFYRSYRDQESKKGLDQEEVFEKPDRESCQGM--------RMAVYDKLDDDGIIAP 856

Query: 857  GANLQSGDIVIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGK 901
            G+ +   D++IGK                  +  D S  ++ TE G+V +V++S N +G 
Sbjct: 857  GSRVSGDDVLIGKTVTLPENDDELEGTTRRFTKRDSSTFMRRTETGIVDQVMVSINQEGY 916

Query: 902  NFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQ 961
             F  + +R VR P +GDKF+S HGQKG  G    QE+ PFT +GI PDI+INPHA PSR 
Sbjct: 917  KFCKIKIRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTAEGITPDIIINPHAIPSRM 976

Query: 962  TPGQLLEAALGKGIAALGKGICSGLKRYATPFA-TPSVDAITEQLHRAGFSKWGTERLYD 1020
            T G L+E   GK   +  KG        ATPF  T +V  I+  LH  G+   G E LY+
Sbjct: 977  TIGHLIECLQGK--VSANKGEIGD----ATPFNDTVNVQKISNLLHEYGYHLRGNEVLYN 1030

Query: 1021 GRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEME 1080
            G TG  + + IFIGPT+YQRL HM +DK+  R  GP+  L RQP+  R R GG++FGEME
Sbjct: 1031 GFTGRKLGTQIFIGPTYYQRLKHMVDDKIHSRARGPLQILNRQPMEGRSRDGGLRFGEME 1090

Query: 1081 RDCLIAHGAAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICD 1138
            RDC I+HGAA  L ERLF +SD Y++H+C  C    +AN+               CR C 
Sbjct: 1091 RDCQISHGAAQFLRERLFEVSDPYRVHVCNLCGLIAIANLRNNTFE---------CRGCK 1141

Query: 1139 SGDDIVKANVPYGAKLLCQELFSMGIT 1165
            +   I +  +PY  KLL QEL SM I 
Sbjct: 1142 NKTQISQIRLPYACKLLFQELMSMSIA 1168


>gi|324120662|dbj|BAJ78722.1| RNA polymerase II second largest subunit [Protohermes grandis]
          Length = 1175

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 418/1229 (34%), Positives = 629/1229 (51%), Gaps = 148/1229 (12%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPS 74
            ++  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S
Sbjct: 16   EISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTS 75

Query: 75   KKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVY 134
             + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +     
Sbjct: 76   GEIENPPRYL-LKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLTYSAPLYVDI----- 128

Query: 135  TQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDC 188
                 T    K G      ++ +  +     IG+IP+M++S  C + G+      E  +C
Sbjct: 129  -----TKTIVKEG------EDPIETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNEC 177

Query: 189  DFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVRL 241
              D GGYFII G+EKV +AQE++    ++V        AYK+E       + R    + +
Sbjct: 178  PLDPGGYFIINGSEKVLIAQEKMATNTVYVFAMKDGKYAYKAEIRSCLEHSSRPTSTLWV 237

Query: 242  VDMSK----FEDIKGGEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
              M++     +    G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  +
Sbjct: 238  NMMARGGQAIKKAAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 297

Query: 297  LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
            + ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C
Sbjct: 298  MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFC 357

Query: 343  MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                         +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL      
Sbjct: 358  -----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLL------ 400

Query: 403  HIAHARKRMAKALQRD--LYGDRTV-RPIEYYLDASI----LTNGLSRAFSTGAWSHPFK 455
              A   + + K L ++  LY  + + R  ++ LD +I    +T+GL  + +TG W    K
Sbjct: 401  --AFLFRGLFKNLMKEVRLYAQKFIDRGKDFNLDLAIKTKMITDGLRYSLATGNWGDQKK 458

Query: 456  RTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGE 515
              +  +G+   L R     TL  LRR    +   GK+   R  H + WG IC   TP+G 
Sbjct: 459  AHQARAGVSQVLNRLTFASTLSHLRRINSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 518

Query: 516  NCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCK 574
              GLVKNL +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +
Sbjct: 519  AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 578

Query: 575  DSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN-------- 625
            D    ++ LR+ RR+ ++  ++V + RD    E+RI+ D+GRI RPLL+VEN        
Sbjct: 579  DPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDSGRICRPLLIVENGKLLLKKR 638

Query: 626  -MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCE 684
             +  +K  E  NY +Q L+  G++E + T EEE    A   + L  + E       THCE
Sbjct: 639  HIDMLKEREYNNYGWQVLVASGVVEYIDTLEEETVMIAMSPEDLRHEKEYAYCTTHTHCE 698

Query: 685  LDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQR 744
            +  + +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +
Sbjct: 699  IHAAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHK 757

Query: 745  PLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGM 804
            PL  T   +            L   EL  G N+IVA+  + GYNQEDS+++N +++ERG 
Sbjct: 758  PLVTTRSME-----------YLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGF 806

Query: 805  FRSEHIRSYK----AEVDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIG 857
            FRS   RSYK      + ++E Q +   R++   M N           D LDDDG    G
Sbjct: 807  FRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMRN--------AHYDKLDDDGIISPG 858

Query: 858  ANLQSGDIVIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKN 902
              +   D+VIGK                  +  D S  L+++E G+V +V+L+ N +G  
Sbjct: 859  IRVSGDDVVIGKTITLPENEDELEGTTKRFTKRDASTFLRNSETGVVDQVMLTLNSEGYK 918

Query: 903  FSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQT 962
            F  + +R VR P +GDKF+S HGQKG  G    QE+ PFT +G+ PDI+INPHA PSR T
Sbjct: 919  FCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMT 978

Query: 963  PGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDG 1021
             G L+E   GK   +  KG        ATPF    +V  I+  L   G+   G E +Y+G
Sbjct: 979  IGHLIECIQGK--VSSNKGEIGD----ATPFNDAVNVQKISTLLQEYGYHLRGNEVMYNG 1032

Query: 1022 RTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMER 1081
             TG  + + IF+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMER
Sbjct: 1033 HTGRKINAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMER 1092

Query: 1082 DCLIAHGAAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDS 1139
            DC I+HGAA  L ERLF +SD Y++H+C  C    +AN+               C+ C +
Sbjct: 1093 DCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---------CKGCKN 1143

Query: 1140 GDDIVKANVPYGAKLLCQELFSMGITLKF 1168
               I +  +PY AKLL QEL SM I  + 
Sbjct: 1144 KTQISQVRLPYAAKLLFQELMSMNIAPRL 1172


>gi|440903358|gb|ELR54029.1| DNA-directed RNA polymerase II subunit RPB2 [Bos grunniens mutus]
          Length = 1175

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 429/1241 (34%), Positives = 624/1241 (50%), Gaps = 160/1241 (12%)

Query: 2    DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-D 60
            D DD+  T      DL +E     C     S+F+E GLV  Q++S++EFI+  +Q+   D
Sbjct: 12   DEDDDEITP-----DLWQEA----CWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 62

Query: 61   SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
            +    +       S + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+T
Sbjct: 63   APPIDLQAEAQHASGEVEEPPRYL-LKFEQIYLSKPTHWERDGAPS-PMMPNEARLRNLT 120

Query: 121  YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
            YS+ + V +          T    K G EQ      L  +     IG+IP+M++S  C +
Sbjct: 121  YSAPLYVDI----------TKTVIKEGEEQ------LQTQHQKTFIGKIPIMLRSTYCLL 164

Query: 181  KGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR 234
             G+      E  +C  D GGYFII G+EKV +AQE++    ++V        AY  E + 
Sbjct: 165  NGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRS 224

Query: 235  N-------------RLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDK 281
                           ++ R    +K   I G   V ++ ++  E+PI I+F ALG  SD+
Sbjct: 225  CLENSSRPTSTIWVSMLARGGQGAKKSAI-GQRIVATLPYIKQEVPIIIVFRALGFVSDR 283

Query: 282  EIVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKL 327
            +I+  I +  ED  ++ ++  S+ +A      N    F   R A         +KY  ++
Sbjct: 284  DILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEV 343

Query: 328  IKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNK 387
            ++    P    ++ C             +KA FLGYMV  LL A  GRR+ D+RD + NK
Sbjct: 344  LQKEMLPHVGVSDFC-----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNK 392

Query: 388  RLELAGELLERELKVHIAHARKRMAKALQRD--LYGDRTVR-----PIEYYLDASILTNG 440
            RL+LAG LL        A   + M K L ++  +Y  + +       +E  +   I+++G
Sbjct: 393  RLDLAGPLL--------AFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDG 444

Query: 441  LSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHP 500
            L  + +TG W    K  +  +G+   L R     TL  LRR    +   GK+   R  H 
Sbjct: 445  LKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHN 504

Query: 501  SHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGG 559
            + WG +C   TP+G   GLVKNL +   +S  S   PI E L    ME L + +  ++  
Sbjct: 505  TLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIAD 564

Query: 560  KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILR 618
              K+FV+G W+G+ KD    ++ LR+ RR+ ++  ++V + RD  + E+RI+ DAGRI R
Sbjct: 565  ATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICR 624

Query: 619  PLLVVE---------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLL 669
            PLL+VE         ++ ++K  E  NY++Q L+  G++E + T EEE    A       
Sbjct: 625  PLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAM----TP 680

Query: 670  KDIEDKKPI---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTT 726
             D+++K+      +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   T
Sbjct: 681  DDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYIT 739

Query: 727  NPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLG 786
            N  +R+DTL+H L+YPQ+PL  T   +            L   EL  G N+IVA+  + G
Sbjct: 740  NFHVRMDTLAHVLYYPQKPLVTTRSME-----------YLRFRELPAGINSIVAIASYTG 788

Query: 787  YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGR-- 844
            YNQEDS++MNR++++RG FRS   RSYK        Q  ++  D    F K   +  +  
Sbjct: 789  YNQEDSVIMNRSAVDRGFFRSVFYRSYKE-------QESKKGFDQEEVFEKPTRETCQGM 841

Query: 845  ----VDSLDDDGFPFIGANLQSGDIVIGKYAD---------------SGADHSIKLKHTE 885
                 D LDDDG    G  +   D++IGK                  +  D S  L+ +E
Sbjct: 842  RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFLRTSE 901

Query: 886  RGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQG 945
             G+V +V+++ N +G  F  + +R VR P +GDKF+S HGQKG  G    QE+ PFT +G
Sbjct: 902  TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG 961

Query: 946  IVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQ 1004
            I PDI+INPHA PSR T G L+E   GK   +  KG        ATPF    +V  I+  
Sbjct: 962  ITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGEIGD----ATPFNDAVNVQKISNL 1015

Query: 1005 LHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQP 1064
            L   G+   G E LY+G TG  + S IFIGPT+YQRL HM +DK+  R  GP+  L RQP
Sbjct: 1016 LSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQP 1075

Query: 1065 VADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVG 1124
            +  R R GG++FGEMERDC IAHGAA  L ERLF  SD YQ+H+C  C  +A        
Sbjct: 1076 MEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAI------- 1128

Query: 1125 GGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
               +     CR C +   I    +PY  KLL QEL SM I 
Sbjct: 1129 ANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIA 1169


>gi|281352499|gb|EFB28083.1| hypothetical protein PANDA_006563 [Ailuropoda melanoleuca]
          Length = 1168

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 429/1241 (34%), Positives = 624/1241 (50%), Gaps = 160/1241 (12%)

Query: 2    DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-D 60
            D DD+  T      DL +E     C     S+F+E GLV  Q++S++EFI+  +Q+   D
Sbjct: 5    DEDDDEITP-----DLWQEA----CWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 55

Query: 61   SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
            +    +       S + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+T
Sbjct: 56   APPIDLQAEAQHASGEVEEPPRYL-LKFEQIYLSKPTHWERDGAPS-PMMPNEARLRNLT 113

Query: 121  YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
            YS+ + V +          T    K G EQ      L  +     IG+IP+M++S  C +
Sbjct: 114  YSAPLYVDI----------TKTVIKEGEEQ------LQTQHQKTFIGKIPIMLRSTYCLL 157

Query: 181  KGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR 234
             G+      E  +C  D GGYFII G+EKV +AQE++    ++V        AY  E + 
Sbjct: 158  NGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRS 217

Query: 235  N-------------RLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDK 281
                           ++ R    +K   I G   V ++ ++  E+PI I+F ALG  SD+
Sbjct: 218  CLENSSRPTSTIWVSMLARGGQGAKKSAI-GQRIVATLPYIKQEVPIIIVFRALGFVSDR 276

Query: 282  EIVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKL 327
            +I+  I +  ED  ++ ++  S+ +A      N    F   R A         +KY  ++
Sbjct: 277  DILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEV 336

Query: 328  IKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNK 387
            ++    P    ++ C             +KA FLGYMV  LL A  GRR+ D+RD + NK
Sbjct: 337  LQKEMLPHVGVSDFC-----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNK 385

Query: 388  RLELAGELLERELKVHIAHARKRMAKALQRD--LYGDRTVR-----PIEYYLDASILTNG 440
            RL+LAG LL        A   + M K L ++  +Y  + +       +E  +   I+++G
Sbjct: 386  RLDLAGPLL--------AFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDG 437

Query: 441  LSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHP 500
            L  + +TG W    K  +  +G+   L R     TL  LRR    +   GK+   R  H 
Sbjct: 438  LKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHN 497

Query: 501  SHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGG 559
            + WG +C   TP+G   GLVKNL +   +S  S   PI E L    ME L + +  ++  
Sbjct: 498  TLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIAD 557

Query: 560  KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILR 618
              K+FV+G W+G+ KD    ++ LR+ RR+ ++  ++V + RD  + E+RI+ DAGRI R
Sbjct: 558  ATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICR 617

Query: 619  PLLVVE---------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLL 669
            PLL+VE         ++ ++K  E  NY++Q L+  G++E + T EEE    A       
Sbjct: 618  PLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD--- 674

Query: 670  KDIEDKKPI---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTT 726
             D+++K+      +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   T
Sbjct: 675  -DLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYIT 732

Query: 727  NPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLG 786
            N  +R+DTL+H L+YPQ+PL  T   +            L   EL  G N+IVA+  + G
Sbjct: 733  NFHVRMDTLAHVLYYPQKPLVTTRSME-----------YLRFRELPAGINSIVAIASYTG 781

Query: 787  YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGR-- 844
            YNQEDS++MNR++++RG FRS   RSYK        Q  ++  D    F K   +  +  
Sbjct: 782  YNQEDSVIMNRSAVDRGFFRSVFYRSYKE-------QESKKGFDQEEVFEKPTRETCQGM 834

Query: 845  ----VDSLDDDGFPFIGANLQSGDIVIGKYAD---------------SGADHSIKLKHTE 885
                 D LDDDG    G  +   D++IGK                  +  D S  L+ +E
Sbjct: 835  RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFLRTSE 894

Query: 886  RGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQG 945
             G+V +V+++ N +G  F  + +R VR P +GDKF+S HGQKG  G    QE+ PFT +G
Sbjct: 895  TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG 954

Query: 946  IVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQ 1004
            I PDI+INPHA PSR T G L+E   GK   +  KG        ATPF    +V  I+  
Sbjct: 955  ITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGEIGD----ATPFNDAVNVQKISNL 1008

Query: 1005 LHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQP 1064
            L   G+   G E LY+G TG  + S IFIGPT+YQRL HM +DK+  R  GP+  L RQP
Sbjct: 1009 LSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQP 1068

Query: 1065 VADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVG 1124
            +  R R GG++FGEMERDC IAHGAA  L ERLF  SD YQ+H+C  C  +A        
Sbjct: 1069 MEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAI------- 1121

Query: 1125 GGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
               +     CR C +   I    +PY  KLL QEL SM I 
Sbjct: 1122 ANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIA 1162


>gi|335293559|ref|XP_003129085.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Sus scrofa]
          Length = 1167

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 429/1241 (34%), Positives = 624/1241 (50%), Gaps = 160/1241 (12%)

Query: 2    DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-D 60
            D DD+  T      DL +E     C     S+F+E GLV  Q++S++EFI+  +Q+   D
Sbjct: 4    DEDDDEITP-----DLWQEA----CWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 54

Query: 61   SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
            +    +       S + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+T
Sbjct: 55   APPIDLQAEAQHASGEVEEPPRYL-LKFEQIYLSKPTHWERDGAPS-PMMPNEARLRNLT 112

Query: 121  YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
            YS+ + V +          T    K G EQ      L  +     IG+IP+M++S  C +
Sbjct: 113  YSAPLYVDI----------TKTVIKEGEEQ------LQTQHQKTFIGKIPIMLRSTYCLL 156

Query: 181  KGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR 234
             G+      E  +C  D GGYFII G+EKV +AQE++    ++V        AY  E + 
Sbjct: 157  NGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRS 216

Query: 235  N-------------RLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDK 281
                           ++ R    +K   I G   V ++ ++  E+PI I+F ALG  SD+
Sbjct: 217  CLENSSRPTSTIWVSMLARGGQGAKKSAI-GQRIVATLPYIKQEVPIIIVFRALGFVSDR 275

Query: 282  EIVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKL 327
            +I+  I +  ED  ++ ++  S+ +A      N    F   R A         +KY  ++
Sbjct: 276  DILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEV 335

Query: 328  IKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNK 387
            ++    P    ++ C             +KA FLGYMV  LL A  GRR+ D+RD + NK
Sbjct: 336  LQKEMLPHVGVSDFC-----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNK 384

Query: 388  RLELAGELLERELKVHIAHARKRMAKALQRD--LYGDRTVR-----PIEYYLDASILTNG 440
            RL+LAG LL        A   + M K L ++  +Y  + +       +E  +   I+++G
Sbjct: 385  RLDLAGPLL--------AFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDG 436

Query: 441  LSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHP 500
            L  + +TG W    K  +  +G+   L R     TL  LRR    +   GK+   R  H 
Sbjct: 437  LKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHN 496

Query: 501  SHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGG 559
            + WG +C   TP+G   GLVKNL +   +S  S   PI E L    ME L + +  ++  
Sbjct: 497  TLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIAD 556

Query: 560  KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILR 618
              K+FV+G W+G+ KD    ++ LR+ RR+ ++  ++V + RD  + E+RI+ DAGRI R
Sbjct: 557  ATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICR 616

Query: 619  PLLVVE---------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLL 669
            PLL+VE         ++ ++K  E  NY++Q L+  G++E + T EEE    A       
Sbjct: 617  PLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD--- 673

Query: 670  KDIEDKKPI---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTT 726
             D+++K+      +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   T
Sbjct: 674  -DLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYIT 731

Query: 727  NPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLG 786
            N  +R+DTL+H L+YPQ+PL  T   +            L   EL  G N+IVA+  + G
Sbjct: 732  NFHVRMDTLAHVLYYPQKPLVTTRSME-----------YLRFRELPAGINSIVAIASYTG 780

Query: 787  YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGR-- 844
            YNQEDS++MNR++++RG FRS   RSYK        Q  ++  D    F K   +  +  
Sbjct: 781  YNQEDSVIMNRSAVDRGFFRSVFYRSYKE-------QESKKGFDQEEVFEKPTRETCQGM 833

Query: 845  ----VDSLDDDGFPFIGANLQSGDIVIGKYAD---------------SGADHSIKLKHTE 885
                 D LDDDG    G  +   D++IGK                  +  D S  L+ +E
Sbjct: 834  RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFLRTSE 893

Query: 886  RGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQG 945
             G+V +V+++ N +G  F  + +R VR P +GDKF+S HGQKG  G    QE+ PFT +G
Sbjct: 894  TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG 953

Query: 946  IVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQ 1004
            I PDI+INPHA PSR T G L+E   GK   +  KG        ATPF    +V  I+  
Sbjct: 954  ITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGEIGD----ATPFNDAVNVQKISNL 1007

Query: 1005 LHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQP 1064
            L   G+   G E LY+G TG  + S IFIGPT+YQRL HM +DK+  R  GP+  L RQP
Sbjct: 1008 LSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQP 1067

Query: 1065 VADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVG 1124
            +  R R GG++FGEMERDC IAHGAA  L ERLF  SD YQ+H+C  C  +A        
Sbjct: 1068 MEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAI------- 1120

Query: 1125 GGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
               +     CR C +   I    +PY  KLL QEL SM I 
Sbjct: 1121 ANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIA 1161


>gi|324120664|dbj|BAJ78723.1| RNA polymerase II second largest subunit [Inocellia japonica]
          Length = 1175

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 416/1217 (34%), Positives = 625/1217 (51%), Gaps = 144/1217 (11%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPSKKGEGEWRYA 84
            C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S + E    Y 
Sbjct: 26   CWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSAEIETPPHYL 85

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKF 144
             ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +          T    
Sbjct: 86   -LKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLTYSAPLYVDI----------TKTII 133

Query: 145  KTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFII 198
            K G       + +  +     IG+IP+M++S  C + G+      E  +C  D GGYFII
Sbjct: 134  KDG------DDPIETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNECPLDPGGYFII 187

Query: 199  KGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR---------NRLIVRLVDM--SKF 247
             G+EKV +AQE++    ++V +      AYK+E +          + L V ++       
Sbjct: 188  NGSEKVLIAQEKMATNTVYVFSMKDSKYAYKAEIRSCLEHSSRPTSSLWVNMMARGGQAI 247

Query: 248  EDIKGGEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHD 306
            +    G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  ++ ++  S+ +
Sbjct: 248  KKAAIGQRIIAILPYIRQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDE 307

Query: 307  A-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEECMNTYLFPSLH 352
            A      N    F   R A         +KY  ++++    P    ++ C          
Sbjct: 308  AFVIQEQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFC---------- 357

Query: 353  GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMA 412
               +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL        A   + + 
Sbjct: 358  -ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLL--------AFLFRGLF 408

Query: 413  KALQRD--LYGDRTV-RPIEYYLDASI----LTNGLSRAFSTGAWSHPFKRTERISGIVA 465
            K L ++  +Y  + + R  ++ LD +I    +T+GL  + +TG W    K  +  +G+  
Sbjct: 409  KNLMKEVRMYAQKFIDRGKDFNLDLAIKTKMITDGLRYSLATGNWGDQKKAHQARAGVSQ 468

Query: 466  NLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV 525
             L R     TL  LRR    +   GK+   R  H + WG IC   TP+G   GLVKNL +
Sbjct: 469  VLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLAL 528

Query: 526  TGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELR 584
               +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    ++ LR
Sbjct: 529  MAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLR 588

Query: 585  RKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKSLEG 634
            + RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VEN         +  +K  E 
Sbjct: 589  KLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGNLLLKKSHVDMLKDREY 648

Query: 635  KNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLS 694
             NY +Q L+  G++E + T EEE    A   + L +D E+     +THCE+  + +LG+ 
Sbjct: 649  NNYGWQVLVASGVVEYIDTLEEETVMIAMSPEDLRQDKENAYCNTYTHCEIHPAMILGVC 708

Query: 695  CGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDC 754
              IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T   + 
Sbjct: 709  ASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSME- 766

Query: 755  LGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYK 814
                       L   EL  G N+IVA+  + GYNQEDS+++N +++ERG FRS   RSYK
Sbjct: 767  ----------YLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYK 816

Query: 815  ----AEVDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVI 867
                  + ++E Q +   R++   M N           D LDDDG    G  +   D+VI
Sbjct: 817  DSESKRIGDQEEQFEKPTRQTCQGMRN--------AHYDKLDDDGIISPGIRVSGDDVVI 868

Query: 868  GKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVR 912
            GK                  +  D S  L+++E G+V +V+L+ N +G  F  + +R VR
Sbjct: 869  GKTIMLPENEDELEGTTKRYTKRDASTFLRNSETGVVDQVMLTLNSEGYKFCKIRVRSVR 928

Query: 913  SPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALG 972
             P +GDKF+S HGQKG  G    QE+ PFT +G+ PDI+INPHA PSR T G L+E   G
Sbjct: 929  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECIQG 988

Query: 973  KGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLI 1031
            K   +  KG        ATPF    +V  I+  L   G+   G E +Y+G TG  + + +
Sbjct: 989  K--VSSNKGEIGD----ATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQV 1042

Query: 1032 FIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAA 1091
            F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC IAHGAA 
Sbjct: 1043 FLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQ 1102

Query: 1092 NLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYG 1151
             L ERLF +SD Y++H+C  C  +A           K     C+ C +   I +  +PY 
Sbjct: 1103 FLRERLFEVSDPYRIHVCNFCGLIAI-------ANLKNNTFECKGCKNKTQISQVRLPYA 1155

Query: 1152 AKLLCQELFSMGITLKF 1168
            AKLL QEL +M I  + 
Sbjct: 1156 AKLLFQELMAMNIAPRL 1172


>gi|399949761|gb|AFP65418.1| DNA-directed RNA polymerase II second largest subunit [Chroomonas
            mesostigmatica CCMP1168]
          Length = 1222

 Score =  620 bits (1600), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 421/1242 (33%), Positives = 623/1242 (50%), Gaps = 157/1242 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYAS-----M 86
            S+F E  L+  QI+S+NEFI++ +Q   D     IV    D SKK  G + ++      +
Sbjct: 20   SYFKENNLIRQQIDSFNEFIESKIQDIVDDIPPLIV---IDDSKKKTGSFEFSKNRKLIL 76

Query: 87   RFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKT 146
            R GQ+ + KP+F   NG   H + P  ARL+N +YSS +   +        R   ++ + 
Sbjct: 77   RLGQLHISKPTFIEENGM-THSLRPIDARLRNFSYSSPLYCDISITTLQIAREKEEEREI 135

Query: 147  GREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKG 200
              ++  QK +L         GR+P+M+KS  C +  +  GD      C FD GGYFII G
Sbjct: 136  FEKEEHQKTLL---------GRLPIMIKSRFCVLDKLLPGDMVKFKECPFDAGGYFIING 186

Query: 201  AEKVFVAQEQICLKRLW------VSNSMGWTVAYKSENKRNRLIVRLVDMSKF------- 247
            +EKV V QEQ+    ++      ++ S    V Y   NK          +++F       
Sbjct: 187  SEKVMVGQEQLAWNHVYIFPKKEINKSSEKIVFYT--NKGILFFAECRSVAEFGRWSPSL 244

Query: 248  -------------------EDIKGGEKVLSVY----------FLSTEIPIWILFFALGVS 278
                               ++    E ++ +Y          +   +IP+  +F ALG  
Sbjct: 245  LTVKVCVTVFPKKKKNKSTKNDNQKESLIHLYGGLYLRAILPYFKKDIPVTWIFKALGFE 304

Query: 279  SDKEIVNLIDFTCEDCSILNILFASIHDAD-NKCDEFRKG------RNALKYVDKLI-KG 330
            ++ EI+N + +  ED  ++ ++  SI D      + F           AL  + + I KG
Sbjct: 305  NENEILNYVCYGDEDEDLIEVIRYSIEDDRLTTANIFSNNSFILDQETALAVIGQHISKG 364

Query: 331  TTFPPGESTEECMNTYLFPSLHGTKQ-----KARFLGYMVKCLLQAYSGRRKCDNRDDFR 385
            T     +   E +     P + G  Q     K  FLGY++  L+    G+RK D+RD + 
Sbjct: 365  TQGIRIKQAYEILQKEFLPHI-GIGQGFELRKGFFLGYIINKLMNTQIGKRKTDDRDHYG 423

Query: 386  NKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAF 445
            +KRL++AG LL    +  +    K +  +LQ+ +   +  +PI  +L + ++T G+  A 
Sbjct: 424  HKRLDVAGSLLSILFRQLLGKVIKDLRVSLQKKVSLHKNFQPIFDFLKSRLITTGIQFAL 483

Query: 446  STGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGK 505
            +TG W    K+  R +G+   L R      L  LRR        GK+   R  H +HWG 
Sbjct: 484  ATGNWGID-KQVSR-TGVSQVLNRLTFSSALSHLRRLNSPGGRDGKLTKPRQLHNTHWGL 541

Query: 506  ICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVF 564
            IC   TP+G  CGLV+NL +T  V+  S  +PI E L  S ++ L+      +   FK+F
Sbjct: 542  ICPAETPEGHACGLVRNLAMTAFVTIGSPSDPILELLEESKIKNLSKIGFGKVRQSFKIF 601

Query: 565  VDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVV- 623
            V+G WIG+  + L  ++ +R+ RR  ++  ++    D L+ E+RIF D+GRI RPLLVV 
Sbjct: 602  VNGCWIGIHYNPLLLINLIRKARRSGKIREEISFSIDNLEKEIRIFTDSGRISRPLLVVK 661

Query: 624  -------ENMGK-----------IKSLEG-KNYTFQALLDHGIIELVGTEEEEDCCTAWG 664
                   +N+G+           I+ L+G KNY F  L+  GI+E +  EEEE C  A  
Sbjct: 662  KNNQYNRQNLGEKFFSFLLEKRHIEKLKGDKNYLFSDLIKEGIVEYIDAEEEEMCLIAMS 721

Query: 665  IKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFP 724
            I  +++         FTH E+  S +LG+    IPF +H+ + R  YQS     QAIG  
Sbjct: 722  IDEVIEQNLKTTETDFTHSEIHPSMILGVCGSFIPFPDHNQSPRNTYQSA-MGKQAIGIY 780

Query: 725  TTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVH 784
            + N   R+DT++H L+YPQ+PL  T   D L    +            NG NAIVA+  +
Sbjct: 781  SMNFQFRMDTMAHILYYPQKPLVVTRAMDFLNYKDFP-----------NGINAIVAIACY 829

Query: 785  LGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQS---- 840
             GYNQEDS++M++ +++RG+FRS   RSYK      E ++K     ++    KI+     
Sbjct: 830  GGYNQEDSIIMSQDAIDRGLFRSVFYRSYK-----DEEKIKFGGQKEVFETPKIKDCVGF 884

Query: 841  KIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSG------------------ADHSIKLK 882
            K G    LD DG    G  +   DI+IGK                        D S  ++
Sbjct: 885  KSGSYTKLDLDGLISEGTKVSGDDIIIGKTVPFNFFEAEYNLNSSERVYKFKKDSSTSVR 944

Query: 883  HTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT 942
              E G+V KV++ + D G     + +R VR P +GDKF+S HGQKG++G L  Q + PFT
Sbjct: 945  SFESGIVDKVLIGTTDIGTKLVKIRIRSVRIPQIGDKFASRHGQKGIVGMLYKQVDLPFT 1004

Query: 943  IQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAIT 1002
              GI+P+I++NPHA PSR T G LLE  L K +AALG     G +   +PF+  SV+ IT
Sbjct: 1005 PDGIIPEIIMNPHAIPSRMTIGHLLECLLSK-VAALG-----GFEGDGSPFSKISVEKIT 1058

Query: 1003 EQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTR 1062
            EQL +  + K+G E L +G TGE++ + IFIGPT+YQRL HM +DK+  R  GPV  LTR
Sbjct: 1059 EQLEKFNYEKFGWENLANGATGELLEAKIFIGPTYYQRLKHMVDDKIHSRARGPVQILTR 1118

Query: 1063 QPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRV 1122
            QPV  R R GG++FGEMERDC+I+HGAA  L +RL   SD++ + +C  C  +A      
Sbjct: 1119 QPVEGRARDGGLRFGEMERDCMISHGAAVFLKDRLLDQSDAFTVFVCDFCGFIAI----- 1173

Query: 1123 VGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
                 K     C+ C   + I +  +PY  KLL QEL SM I
Sbjct: 1174 --SNHKQNIYECKSCKPRNSISQIKIPYACKLLFQELMSMAI 1213


>gi|312079478|ref|XP_003142191.1| DNA-directed RNA polymerase II second largest subunit [Loa loa]
 gi|307762647|gb|EFO21881.1| DNA-directed RNA polymerase II subunit RPB2 [Loa loa]
          Length = 1171

 Score =  620 bits (1600), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 406/1213 (33%), Positives = 624/1213 (51%), Gaps = 124/1213 (10%)

Query: 17   LGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPSK 75
            +  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S 
Sbjct: 19   ISSEQWQEACWVVISAYFDEKGLVRQQLDSFDEFIQMNVQRIVEDSPPVELQSEVQHFSG 78

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT 135
              E   ++A ++F Q+ L KP+ +  +G     M P  ARL+N+TYSS + + +     T
Sbjct: 79   DVENPIKFA-LKFDQIYLSKPTHWEKDGAPT-PMMPNEARLRNLTYSSPLYIDI---TKT 133

Query: 136  QKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCD 189
              R+  +  +T  E+             + +G+IP+M++S  C +  +      E  +C 
Sbjct: 134  MTRIGEEPKETKYEK-------------VFVGKIPIMLRSSYCMLANMSDRDLSELNECP 180

Query: 190  FDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR---------NRLIVR 240
             D GGYF+I G+EKV +AQE++    ++V +       YK+E +          + L V 
Sbjct: 181  LDPGGYFVINGSEKVLIAQEKMATNTVYVFSMKDGKYTYKTECRSCLENSSRPTSTLWVN 240

Query: 241  LVDMSKFEDIKG--GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSIL 297
            ++        K   G K++++  ++  EIP+ I+F ALG  SD +I+  I +  ED  ++
Sbjct: 241  MLPRGGGGSKKSAMGPKIIAILPYIKQEIPVMIVFRALGFVSDHDILEHIIYDFEDPEMM 300

Query: 298  NILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEECM 343
             ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C 
Sbjct: 301  EMVKPSLDEAFVIQEQNVALNFIGARGAKPGVTKEQRIKYAKEILQKEMLPHVGISDFC- 359

Query: 344  NTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVH 403
                        +KA FLGYMV  LL A  GRR+ D+RD   NKRL+LAG LL    +  
Sbjct: 360  ----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHMGNKRLDLAGPLLAFLFRAL 409

Query: 404  IAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGI 463
              +  K +    Q+ +  +     ++  +   ++T GL+ + +TG W    K  +  +G+
Sbjct: 410  FRNLLKEVRLTAQKYINKNGDFM-LDLCVKTPLITRGLAYSLATGNWGDQKKAHQSRAGV 468

Query: 464  VANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNL 523
               L R     TL  LRR    +   GK+   R  H + WG +C   TP+G+  GLVKNL
Sbjct: 469  SQVLNRLTYTATLSHLRRCNSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNL 528

Query: 524  GVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSE 582
             +   +S  S+ EPI E L    ME L + A  ++    K+FV+G W+G+ +D    ++ 
Sbjct: 529  ALMAYISVGSLPEPILEFLEEWSMENLEEVAPTAIADATKIFVNGAWVGIHRDPEQLMTT 588

Query: 583  LRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMG------KIKSLEGK 635
            L++ RR  ++  ++V + RD    E+RI+ DAGR+ RPLL+VEN         I  L+  
Sbjct: 589  LKKLRREMDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVENQKLALKRKHIDQLKDN 648

Query: 636  NYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPI-KFTHCELDMSFLLGLS 694
            +YT+  L+  G++EL+   EEE    A     + +D++       +THCE+  + +LG+ 
Sbjct: 649  SYTWSELVAGGVVELIDAMEEETVMLAM----MPEDLKAGGYCDTYTHCEIHPAMILGVC 704

Query: 695  CGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDC 754
              IIPF +H+ + R  YQS     QA+G  TTN  +R+DTL+H L+YPQ+PL  T   + 
Sbjct: 705  ASIIPFPDHNQSPRNTYQS-AMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSME- 762

Query: 755  LGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYK 814
                       L   EL  G NAIVA+  + GYNQEDS++MN++ ++RG+FRS   RSY+
Sbjct: 763  ----------YLRFNELPAGINAIVAILSYTGYNQEDSIIMNQSGIDRGLFRSVFYRSYR 812

Query: 815  ---AEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKY- 870
               A +DN   ++  + + D  +      +    D LD+DG    G  +   D++IGK  
Sbjct: 813  DQEANLDNANEELIEKPTRDKCS----GMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTI 868

Query: 871  ----ADSGADHSIK----------LKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCL 916
                 +   D +IK          L+ +E G+V +V+L+ N DG  F  + +R VR P +
Sbjct: 869  SLPDTEDDLDATIKRYTKKDASTFLRSSETGIVDQVMLTLNTDGNKFVKIRVRSVRLPQI 928

Query: 917  GDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIA 976
            GDKF+S HGQKG +G +  QE+ PFT +GI PDI+INPHA PSR T G L+E   GK  A
Sbjct: 929  GDKFASRHGQKGTMGMMYRQEDMPFTNEGITPDIIINPHAVPSRMTIGHLIECLQGKLSA 988

Query: 977  ALGKGICSGLKRYATPFA-TPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGP 1035
               KG        ATPF  T +V  I+  L   G+   G E +Y+G TG  +   +F+GP
Sbjct: 989  --NKGEIGD----ATPFNDTVNVQKISNLLQEYGYHLRGNEIMYNGHTGRKLTIQVFLGP 1042

Query: 1036 TFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHE 1095
            T+YQRL HM +DK+  R  GPV  + RQP+  R R GG++FGEMERDC I+HGAA  L E
Sbjct: 1043 TYYQRLKHMVDDKIHSRARGPVQMMNRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRE 1102

Query: 1096 RLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLL 1155
            RLF +SD Y ++IC  C         +V    +     C+ C +   +    +PY  KLL
Sbjct: 1103 RLFEVSDPYHVYICNNCG-------LIVVANLRTNSFECKACRNKTQVSAFRIPYACKLL 1155

Query: 1156 CQELFSMGITLKF 1168
             QEL SM I  + 
Sbjct: 1156 FQELMSMSIAPRL 1168


>gi|358054058|dbj|GAA99857.1| hypothetical protein E5Q_06560 [Mixia osmundae IAM 14324]
          Length = 1327

 Score =  620 bits (1600), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 411/1218 (33%), Positives = 629/1218 (51%), Gaps = 133/1218 (10%)

Query: 39   LVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSF 98
            LVS QI+S+N+F+ N +Q+  D   + +++         E   RY  + FGQV L +P+ 
Sbjct: 107  LVSQQIDSFNDFLNNSMQEIVDENSKLVLDQELQFQGTAEKLRRY-EINFGQVYLSQPTQ 165

Query: 99   FAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLS 158
               +G     +FP+ ARL+N+TYSS + V V   V        +  + G  ++I +E   
Sbjct: 166  TEADGSVAA-LFPQEARLRNLTYSSPLYVDVSMTVKV-PHPDGELDENGEIEWITEE--- 220

Query: 159  DETTNIII-------GRIPVMVKSDLCWMKGVEKG------DCDFDHGGYFIIKGAEKVF 205
            DE     I       G++P+M+KS  C +  +E+       +C  D GGYFII G+EKV 
Sbjct: 221  DEAGMQQISQHREYLGKVPMMIKSRFCHLLKMEEDALFNADECPLDKGGYFIINGSEKVL 280

Query: 206  VAQEQICLKRLWV-SNSMGWTVAYKSENKR---------NRLIVRLVDMSKFEDIKGGEK 255
            +AQE++    ++V   +    +AY +E +          + L V+++     + + G   
Sbjct: 281  IAQERMAGNTVYVFGKAPPSPIAYLAEIRSVVESGSQTPSSLTVKMMRAGNPDKVGGATG 340

Query: 256  VL---SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA----- 307
             +   ++ ++  +IPI ++F ALG+  DK+I+  I +   D  +  +L  S+ +A     
Sbjct: 341  SVIRVTLPYIRADIPILVVFRALGIIPDKDILQHICYDPNDTDMYELLKPSLEEAFPVQD 400

Query: 308  DNKCDEF--RKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGT----KQKARFL 361
             N   +F  R+G  A    DK I        +   + +   + P +  +    ++KA F 
Sbjct: 401  QNVALDFIGRRGTAAGLTRDKRI--------QYARDVLQKEVLPHVSTSAGSHQKKAYFF 452

Query: 362  GYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYG 421
            GYM+  LL A   RR  D+RD F  KRL+LAG L+    +       K + + LQ+ +  
Sbjct: 453  GYMIHRLLMAAMQRRDLDDRDHFGKKRLDLAGPLVASLFRTLFKKMIKDVYRYLQKCVDT 512

Query: 422  DRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRR 481
             +  + +   + AS +TNGL  + +TG W    K     +G+   L R     TL  LRR
Sbjct: 513  QKEFK-MNNAIRASTITNGLKYSLATGNWGEQKKAAAARAGVSQVLNRYTFASTLSHLRR 571

Query: 482  TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQ 540
            T   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   ++  + + PI + 
Sbjct: 572  TNTPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSYITVGTAIRPIIDF 631

Query: 541  LFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKR 600
            L + G   L +      G K  VFV+G W GV  +    +  L R RR   L   V I R
Sbjct: 632  LQDWGSVSLEEVTDLRKGAK--VFVNGFWQGVHPNPDVLMKVLLRLRRTGTLNKSVSIVR 689

Query: 601  DELQSEVRIFMDAGRILRPLLVVEN---------MGKIKSLEGKNYT--FQALLDHGIIE 649
            D  + E+RIF D GR+ RPLL+V++         +  +      +Y   F  + + GI+E
Sbjct: 690  DIREREIRIFADPGRVCRPLLIVQDQQLRLRRCHLDLLMRDPASDYAAGFDDMTNWGIVE 749

Query: 650  LVGTEEEED---CCTAWGIK--YLLKD-----------------IEDKKPIKFTHCELDM 687
             +  EEEE    C T   ++  Y   D                 I   +  ++THCE+  
Sbjct: 750  FLDAEEEEMAMICMTYEDLEAAYYAHDKDHAKQGVDPTARLRSAITASQAQRWTHCEIHP 809

Query: 688  SFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLF 747
            + +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DT+++ LFYPQ+PL 
Sbjct: 810  AMILGICASIIPFPDHNQSPRNTYQS-AMGKQAMGVYLTNYQVRLDTMANILFYPQKPLA 868

Query: 748  RTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRS 807
             T   D      Y H   LP      GQNAIVA+  + GYNQEDS++MN+++++RG+FRS
Sbjct: 869  TTRSMD------YLHFRQLP-----AGQNAIVAILCYSGYNQEDSVIMNQSAIDRGLFRS 917

Query: 808  EHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVI 867
             + R+Y  + + ++  ++  S +       ++ K G  D L DDGF  +G  ++ GDI+I
Sbjct: 918  FYYRTY-MDTEKRQGALQMESFEKPSRLDTLRLKRGTYDKLGDDGFVRVGEQVRGGDIII 976

Query: 868  GKYADSGADH---------------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVR 912
            GK A    D                S  LK TE G + +V++++N DG  F+ V +R  R
Sbjct: 977  GKTAPIAPDSEELGQRTKDHVKRDVSTPLKSTEEGYIDRVMITTNADGLKFAKVRVRSTR 1036

Query: 913  SPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALG 972
             P  GDKF+S HGQKG +G    Q + PFT +GIVPD++INPHA PSR T G L+E  L 
Sbjct: 1037 IPQTGDKFASRHGQKGTIGITYQQNDMPFTSEGIVPDLIINPHAIPSRMTIGHLVECLLS 1096

Query: 973  KGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIF 1032
            K ++AL     +G +  ATPF+  +VD+++  L   GF   G E + +G TG  + + ++
Sbjct: 1097 K-VSAL-----TGQEGDATPFSDVTVDSVSSVLKAQGFQDRGLEIMSNGHTGRKLAAQVY 1150

Query: 1033 IGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAAN 1092
            +GPT+YQRL HM +DK+  R  GPV  LTRQPV  R R GG++FGEMERDC+IAHG A  
Sbjct: 1151 LGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMIAHGVAGF 1210

Query: 1093 LHERLFTLSDSYQMHICRKC--KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPY 1150
            L ER+F  SD++++H+C  C    +AN++++            CR C +   I +  VPY
Sbjct: 1211 LKERMFEASDAFRIHVCDICGMTAIANLMKQTF---------ECRACKNKTAISQVLVPY 1261

Query: 1151 GAKLLCQELFSMGITLKF 1168
             AKLL  EL +M I  + 
Sbjct: 1262 SAKLLFSELQAMNIATRI 1279


>gi|154707850|ref|NP_001092552.1| DNA-directed RNA polymerase II subunit RPB2 [Bos taurus]
 gi|73975053|ref|XP_532382.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
            [Canis lupus familiaris]
 gi|301765482|ref|XP_002918158.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
            [Ailuropoda melanoleuca]
 gi|410957577|ref|XP_003985402.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
            [Felis catus]
 gi|426231739|ref|XP_004009895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Ovis aries]
 gi|148744083|gb|AAI42268.1| POLR2B protein [Bos taurus]
 gi|296486557|tpg|DAA28670.1| TPA: DNA directed RNA polymerase II polypeptide B [Bos taurus]
          Length = 1174

 Score =  620 bits (1600), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 429/1241 (34%), Positives = 624/1241 (50%), Gaps = 160/1241 (12%)

Query: 2    DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-D 60
            D DD+  T      DL +E     C     S+F+E GLV  Q++S++EFI+  +Q+   D
Sbjct: 11   DEDDDEITP-----DLWQEA----CWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 61   SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
            +    +       S + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+T
Sbjct: 62   APPIDLQAEAQHASGEVEEPPRYL-LKFEQIYLSKPTHWERDGAPS-PMMPNEARLRNLT 119

Query: 121  YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
            YS+ + V +          T    K G EQ      L  +     IG+IP+M++S  C +
Sbjct: 120  YSAPLYVDI----------TKTVIKEGEEQ------LQTQHQKTFIGKIPIMLRSTYCLL 163

Query: 181  KGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR 234
             G+      E  +C  D GGYFII G+EKV +AQE++    ++V        AY  E + 
Sbjct: 164  NGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRS 223

Query: 235  N-------------RLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDK 281
                           ++ R    +K   I G   V ++ ++  E+PI I+F ALG  SD+
Sbjct: 224  CLENSSRPTSTIWVSMLARGGQGAKKSAI-GQRIVATLPYIKQEVPIIIVFRALGFVSDR 282

Query: 282  EIVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKL 327
            +I+  I +  ED  ++ ++  S+ +A      N    F   R A         +KY  ++
Sbjct: 283  DILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEV 342

Query: 328  IKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNK 387
            ++    P    ++ C             +KA FLGYMV  LL A  GRR+ D+RD + NK
Sbjct: 343  LQKEMLPHVGVSDFC-----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNK 391

Query: 388  RLELAGELLERELKVHIAHARKRMAKALQRD--LYGDRTVR-----PIEYYLDASILTNG 440
            RL+LAG LL        A   + M K L ++  +Y  + +       +E  +   I+++G
Sbjct: 392  RLDLAGPLL--------AFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDG 443

Query: 441  LSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHP 500
            L  + +TG W    K  +  +G+   L R     TL  LRR    +   GK+   R  H 
Sbjct: 444  LKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHN 503

Query: 501  SHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGG 559
            + WG +C   TP+G   GLVKNL +   +S  S   PI E L    ME L + +  ++  
Sbjct: 504  TLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIAD 563

Query: 560  KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILR 618
              K+FV+G W+G+ KD    ++ LR+ RR+ ++  ++V + RD  + E+RI+ DAGRI R
Sbjct: 564  ATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICR 623

Query: 619  PLLVVE---------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLL 669
            PLL+VE         ++ ++K  E  NY++Q L+  G++E + T EEE    A       
Sbjct: 624  PLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD--- 680

Query: 670  KDIEDKKPI---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTT 726
             D+++K+      +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   T
Sbjct: 681  -DLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYIT 738

Query: 727  NPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLG 786
            N  +R+DTL+H L+YPQ+PL  T   +            L   EL  G N+IVA+  + G
Sbjct: 739  NFHVRMDTLAHVLYYPQKPLVTTRSME-----------YLRFRELPAGINSIVAIASYTG 787

Query: 787  YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGR-- 844
            YNQEDS++MNR++++RG FRS   RSYK        Q  ++  D    F K   +  +  
Sbjct: 788  YNQEDSVIMNRSAVDRGFFRSVFYRSYKE-------QESKKGFDQEEVFEKPTRETCQGM 840

Query: 845  ----VDSLDDDGFPFIGANLQSGDIVIGKYAD---------------SGADHSIKLKHTE 885
                 D LDDDG    G  +   D++IGK                  +  D S  L+ +E
Sbjct: 841  RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFLRTSE 900

Query: 886  RGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQG 945
             G+V +V+++ N +G  F  + +R VR P +GDKF+S HGQKG  G    QE+ PFT +G
Sbjct: 901  TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG 960

Query: 946  IVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQ 1004
            I PDI+INPHA PSR T G L+E   GK   +  KG        ATPF    +V  I+  
Sbjct: 961  ITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGEIGD----ATPFNDAVNVQKISNL 1014

Query: 1005 LHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQP 1064
            L   G+   G E LY+G TG  + S IFIGPT+YQRL HM +DK+  R  GP+  L RQP
Sbjct: 1015 LSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQP 1074

Query: 1065 VADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVG 1124
            +  R R GG++FGEMERDC IAHGAA  L ERLF  SD YQ+H+C  C  +A        
Sbjct: 1075 MEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAI------- 1127

Query: 1125 GGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
               +     CR C +   I    +PY  KLL QEL SM I 
Sbjct: 1128 ANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIA 1168


>gi|296818239|ref|XP_002849456.1| DNA-dependent RNA polymerase II RPB140 [Arthroderma otae CBS 113480]
 gi|238839909|gb|EEQ29571.1| DNA-dependent RNA polymerase II RPB140 [Arthroderma otae CBS 113480]
          Length = 1258

 Score =  620 bits (1600), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 423/1266 (33%), Positives = 636/1266 (50%), Gaps = 158/1266 (12%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGE--WRY 83
            C     +FF   GLVS Q++S++EFI   +Q+  +  G+  ++    P    +     R 
Sbjct: 24   CWTVISAFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTVPPGDDEQDPVVLRR 83

Query: 84   ASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT-QKRVTSD 142
              ++FG V L +PS   G+G     M P+ ARL+N+TY+S + + +  ++   ++R+ S+
Sbjct: 84   YELKFGTVMLARPSMTEGDGATSI-MLPQEARLRNLTYASPLYLGISKKIMEGRERLLSE 142

Query: 143  KF-------------KTGREQYI---QKEVLSDETT--NIIIGRIPVMVKSDLCWMKGVE 184
            +              +  R  Y+   +K  L DE    NI IG++P+M+KS  C +K + 
Sbjct: 143  RDDEEEEVEEKGDEERRSRGTYLHWERKPTLEDEAEEENIFIGKMPIMLKSKYCILKDLG 202

Query: 185  K------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENK 233
            +       +C +D GGYF+I G+EKV +AQE+     + V      +   +    +S  +
Sbjct: 203  EQALYNWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAVE 262

Query: 234  RNRLIVRLVDMSKF---EDIKGG--EKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLI 287
            +   I+  + +  F   +  KGG    + S   ++ T+IPI ++F ALGV SD++I+N I
Sbjct: 263  KGSRILSQLSIKLFAKGDSAKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDEDILNHI 322

Query: 288  DFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTY- 346
             +   D  +L +L   I +     D       AL ++ K  +G++  P    +E    Y 
Sbjct: 323  CYDRNDTPMLEMLKPCIEEGFVIQDR----EVALDFISK--RGSS--PMSMNQEKRVRYA 374

Query: 347  -------LFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGEL 395
                     P +  ++    +KA FLGYMV  LLQ   GRR  D+RD F  KRL+LAG L
Sbjct: 375  RDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPL 434

Query: 396  LERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFK 455
            L    +V      K + K +QR +   R +  +   + AS LT GL  A +TG W    K
Sbjct: 435  LANLFRVLFMRLTKDLYKYVQRCVETGRQLY-LNIGVKASTLTGGLKYALATGNWGEQKK 493

Query: 456  RTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGE 515
                 +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+
Sbjct: 494  AASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQ 553

Query: 516  NCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCK 574
             CGLVKNL +   ++  +  EPI + +    ME L +          KVFV+G W+GV +
Sbjct: 554  ACGLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTKVFVNGVWVGVHR 613

Query: 575  DSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK------ 628
            D    V  ++  RRR  +  +V +  D    E +IF DAGR+ RPL VV+N  K      
Sbjct: 614  DPAHLVGTVQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSENSGS 673

Query: 629  -------IKSLEG---------------KNYTFQALLDHGIIELVGTEEEEDCCTAWGIK 666
                   I  LE                +++ +  L+  G++E V  EEEE        +
Sbjct: 674  LVLVKEHIHKLEADKELPPDLDPEERRERHFGWDGLVKSGVVEYVDAEEEETIMIVMTPE 733

Query: 667  YL-----------------------LKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANH 703
             L                       +K    +K   +THCE+  S +LG+   IIPF +H
Sbjct: 734  DLEASKQYQAGYGMPEEDTTDSNRRVKSNLSQKAHTWTHCEIHPSMILGICASIIPFPDH 793

Query: 704  DHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHN 763
            + + R  YQS     QA+G   TN   R++T+++ L+YPQ+PL  T   +          
Sbjct: 794  NQSPRNTYQS-AMGKQAMGVFLTNFEQRMETMANILYYPQKPLATTRSME---------- 842

Query: 764  HILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQ 823
              L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y        + 
Sbjct: 843  -FLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGLT 901

Query: 824  VKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA------------ 871
            V  R    M +   ++ K G  D +DDDG    G  +   DI+IGK +            
Sbjct: 902  VVERFEKPMRS-DTLRMKHGTYDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEAEELGQR 960

Query: 872  ---DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKG 928
                +  D S  L+ TE G+V +V++S+++D   F  V +R  + P +GDKF+S HGQKG
Sbjct: 961  TKQHTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKG 1020

Query: 929  VLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKR 988
             +G     E+ PFT +G+ PD++INPHA PSR T   L+E  L K          S L+ 
Sbjct: 1021 TIGITYRHEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSK---------VSSLRG 1071

Query: 989  Y---ATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMS 1045
            Y   ATPF   +VD+++  L   G+   G E +Y+G TG  + + +F+GPT+YQRL HM 
Sbjct: 1072 YEGDATPFTDVTVDSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMV 1131

Query: 1046 EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQ 1105
            +DK+  R  GP   LTRQPV  R R GG++FGEMERDC+IAHGA++ L ERLF +SD ++
Sbjct: 1132 DDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASSFLKERLFDVSDPFR 1191

Query: 1106 MHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
            +HIC  C  +   I +V  G  +     CR C + + I + ++PY AKLL QEL SM I 
Sbjct: 1192 VHICDIC-GLMTPIAKVKKGDFE-----CRACRNKNKISQVHIPYAAKLLFQELASMNIA 1245

Query: 1166 LKFDTE 1171
             +  T+
Sbjct: 1246 ARMYTK 1251


>gi|324120674|dbj|BAJ78728.1| RNA polymerase II second largest subunit [Papilio polytes]
          Length = 1176

 Score =  620 bits (1600), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 415/1236 (33%), Positives = 633/1236 (51%), Gaps = 135/1236 (10%)

Query: 2    DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-D 60
            D++D+ F +  +  ++  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   D
Sbjct: 3    DTEDDQFEEEDNE-EISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 61   SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
            S    +       S + E   +Y  ++F Q+ L KP+ +  +G     M P  ARL+N+T
Sbjct: 62   SPPIELQAEAQHSSGEIETPPKYL-LKFDQIYLSKPTHWEKDGAPS-PMMPNEARLRNLT 119

Query: 121  YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
            YS+ + V +   +  +                 +E +  +   I IG+IP+M++S  C +
Sbjct: 120  YSAPLYVDITKTIVKEN----------------EEPIETQHQKIFIGKIPIMLRSTYCLL 163

Query: 181  KGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE--- 231
              +      E  +C  D GGYFII G+EKV +AQE++    ++V +      AYK+E   
Sbjct: 164  SNLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKTEIRS 223

Query: 232  ----NKRNRLIVRLVDMSKF-EDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKE 282
                + R    + +  M++  + IK    G++++++  ++  EIPI I+F ALG  +D++
Sbjct: 224  CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAIVPYIKQEIPIMIVFRALGFVADRD 283

Query: 283  IVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLI 328
            I+  I +  +D  ++ ++  S+ +A      N    F   R A         +KY  +++
Sbjct: 284  ILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREIL 343

Query: 329  KGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKR 388
            +    P    ++ C             +KA FLGYMV  LL A  GRR+ D+RD + NKR
Sbjct: 344  QKEMLPHVGVSDFC-----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKR 392

Query: 389  LELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTG 448
            L+LAG LL    +    +  K +    Q+ +   +    +E  +   I+T+GL  + +TG
Sbjct: 393  LDLAGPLLAFLFRGLFKNLLKEVRMYAQKFIDRGKDFN-LELAIKTKIITDGLRYSLATG 451

Query: 449  AWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICF 508
             W    K  +  +G+   L R     TL  LRR    +   GK+   R  H + WG IC 
Sbjct: 452  NWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICP 511

Query: 509  LSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDG 567
              TP+G   GLVKNL +   +S  S   PI E L    ME L + A  ++    K+FV+G
Sbjct: 512  AETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNG 571

Query: 568  DWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN- 625
             W+G+ +D    ++ LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VEN 
Sbjct: 572  CWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENG 631

Query: 626  --------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKP 677
                    +  +K  +  NY +Q L+  G++E + T EEE    A     L +  E    
Sbjct: 632  ALLLKKKHIDHLKERDYNNYGWQNLVASGVVEYIDTLEEETVMIAMSPDDLAQVKEYAYC 691

Query: 678  IKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSH 737
              +THCE+  + +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H
Sbjct: 692  STYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAH 750

Query: 738  QLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNR 797
             L+YP +PL  T   +            L   EL  G N+IVA+  + GYNQEDS+++N 
Sbjct: 751  VLYYPHKPLVTTRSME-----------YLRFRELPAGINSIVAILCYTGYNQEDSVILNA 799

Query: 798  ASLERGMFRSEHIRSYK----AEVDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDD 850
            +++ERG FRS   RSYK      + ++E Q +   R++   M N           D LDD
Sbjct: 800  SAVERGFFRSVFYRSYKDSESKRLGDQEEQFEKPTRQTCQGMRN--------ALYDKLDD 851

Query: 851  DGFPFIGANLQSGDIVIGKYAD---------------SGADHSIKLKHTERGMVQKVVLS 895
            DG    G  +   D+VIGK                  +  D S  L+++E G+V +V+++
Sbjct: 852  DGIIAPGIRVSGDDVVIGKTITLPENDDELEGTTRRYTKRDASTFLRNSETGIVDQVMVT 911

Query: 896  SNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPH 955
             N +G  F  + +R VR P +GDKF+S HGQKG  G    QE+ PFT +GI PDI+INPH
Sbjct: 912  LNREGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPH 971

Query: 956  AFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWG 1014
            A PSR T G L+E   GK   +  KG        ATPF    +V  I+  L   G+   G
Sbjct: 972  AIPSRMTIGHLIECIQGK--VSSNKGEIGD----ATPFNDAVNVQKISSLLQEYGYHLRG 1025

Query: 1015 TERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGI 1074
             E +Y+G TG  + + +F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG+
Sbjct: 1026 NEVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGL 1085

Query: 1075 KFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGP 1132
            +FGEMERDC IAHGAA  L ERLF +SD Y++H+C  C    +AN+              
Sbjct: 1086 RFGEMERDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE-------- 1137

Query: 1133 YCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
             C+ C +   I +  +PY AKLL QEL SM I  + 
Sbjct: 1138 -CKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRL 1172


>gi|195145272|ref|XP_002013620.1| GL24239 [Drosophila persimilis]
 gi|198452242|ref|XP_001358686.2| GA16485 [Drosophila pseudoobscura pseudoobscura]
 gi|194102563|gb|EDW24606.1| GL24239 [Drosophila persimilis]
 gi|198131848|gb|EAL27829.2| GA16485 [Drosophila pseudoobscura pseudoobscura]
          Length = 1176

 Score =  620 bits (1600), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 417/1221 (34%), Positives = 628/1221 (51%), Gaps = 134/1221 (10%)

Query: 17   LGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPSK 75
            +  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S 
Sbjct: 18   ISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSG 77

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT 135
            + E   R+ S++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +     T
Sbjct: 78   EVETPPRF-SLKFEQIYLSKPTHWEKDGSPS-PMMPNEARLRNLTYSAPLYVDI---TKT 132

Query: 136  QKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCD 189
            +     D  +T  ++               IG+IP+M++S  C +  +      E  +C 
Sbjct: 133  KNVEGLDPVETQHQK-------------TFIGKIPIMLRSTYCLLSQLTDRDLTELNECP 179

Query: 190  FDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR---------NRLIVR 240
             D GGYFII G+EKV +AQE++    ++V +      A+K+E +          + L V 
Sbjct: 180  LDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVN 239

Query: 241  LVDMSKFEDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
            ++     ++IK    G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  +
Sbjct: 240  MMARGS-QNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 298

Query: 297  LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
            + ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C
Sbjct: 299  MEMVKPSLDEAFVVQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFC 358

Query: 343  MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                         +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL    + 
Sbjct: 359  -----------ETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRG 407

Query: 403  HIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISG 462
               +  K +    Q+ +   +    +E  +  +I+T+GL  + +TG W    K  +  +G
Sbjct: 408  LFKNLMKEVRMYTQKFIDRGKDFN-LELAIKTNIITDGLRYSLATGNWGDQKKAHQARAG 466

Query: 463  IVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKN 522
            +   L R     TL  LRR    +   GK+   R  H + WG +C   TP+G   GLVKN
Sbjct: 467  VSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKN 526

Query: 523  LGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVS 581
            L +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    ++
Sbjct: 527  LALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMA 586

Query: 582  ELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKS 631
             LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VEN         +  +K 
Sbjct: 587  TLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKE 646

Query: 632  LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLL 691
             +  NY++Q L+  G++E + T EEE    A     L +D +      +THCE+  + +L
Sbjct: 647  RDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMIL 706

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T  
Sbjct: 707  GVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRS 765

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
             +            L   EL  G N+IVA+  + GYNQEDS+++N +++ERG FRS   R
Sbjct: 766  ME-----------YLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYR 814

Query: 812  SYKAEVDNKEMQVKRRSSDDMVNFGKIQS------KIGRVDSLDDDGFPFIGANLQSGDI 865
            SYK + +NK      R  D   NF K         +    D LDDDG    G  +   D+
Sbjct: 815  SYK-DSENK------RVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDV 867

Query: 866  VIGKYA---------DSGA------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQ 910
            VIGK           DS        D S  L+++E G+V +V+L+ N +G  F  + +R 
Sbjct: 868  VIGKTITLPENDDELDSNTKRFAKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS 927

Query: 911  VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA 970
            VR P +GDKF+S HGQKG  G    QE+ PFT +G+ PDI+INPHA PSR T G L+E  
Sbjct: 928  VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLAPDIIINPHAIPSRMTIGHLIECL 987

Query: 971  LGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRS 1029
             GK    LG     G    ATPF    +V  I+  L   G+   G E +Y+G TG  + +
Sbjct: 988  QGK----LGSN--KGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINA 1041

Query: 1030 LIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA 1089
             +F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC I+HGA
Sbjct: 1042 QVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGA 1101

Query: 1090 AANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKAN 1147
            A  L ERLF +SD Y++HIC  C    +AN+               C+ C +   I +  
Sbjct: 1102 AQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFE---------CKGCKNKTQISQVR 1152

Query: 1148 VPYGAKLLCQELFSMGITLKF 1168
            +PY AKLL QEL SM I  + 
Sbjct: 1153 LPYAAKLLFQELMSMNIAPRL 1173


>gi|347970296|ref|XP_313416.4| AGAP003648-PA [Anopheles gambiae str. PEST]
 gi|333468866|gb|EAA08858.4| AGAP003648-PA [Anopheles gambiae str. PEST]
          Length = 1175

 Score =  620 bits (1599), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 416/1221 (34%), Positives = 626/1221 (51%), Gaps = 134/1221 (10%)

Query: 17   LGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPSK 75
            +  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S 
Sbjct: 17   ISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELTAEAQHSSG 76

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT 135
            + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +      
Sbjct: 77   EIENPTRYL-LKFDQIYLSKPTHWEKDGSPS-PMMPNEARLRNLTYSAPLYVDI------ 128

Query: 136  QKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCD 189
                T  K   G++       +  +     IG+IP+M++S  C +  +      E  +C 
Sbjct: 129  ----TKTKLVEGQDP------VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECP 178

Query: 190  FDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVRLV 242
             D GGYFII G+EKV +AQE++    ++V +      AYK+E       + R    + + 
Sbjct: 179  LDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKTEIRSCLEHSSRPTSTLWVN 238

Query: 243  DMSKF-EDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSIL 297
             M++  + IK    G++V+++  ++  EIPI I+F ALG  +D++I+  I +  +D  ++
Sbjct: 239  MMARGGQSIKKSAIGQRVIAILPYVKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMM 298

Query: 298  NILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEECM 343
             ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C 
Sbjct: 299  EMVKPSLDEAFVVQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFC- 357

Query: 344  NTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVH 403
                        +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL    +  
Sbjct: 358  ----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGL 407

Query: 404  IAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGI 463
              +  K +    Q+ +   +    +E  +   I+T+GL  + +TG W    K  +  +G+
Sbjct: 408  FKNLMKEVRMYAQKFIDRGKDFN-LELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 466

Query: 464  VANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNL 523
               L R     TL  LRR    +   GK+   R  H + WG IC   TP+G   GLVKNL
Sbjct: 467  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 526

Query: 524  GVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSE 582
             +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    ++ 
Sbjct: 527  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 586

Query: 583  LRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKSL 632
            LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VEN         +  +K  
Sbjct: 587  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLRKNHIDMLKDR 646

Query: 633  EGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLG 692
            +  NY +Q L+  G++E + T EEE    A     L +D E      +THCE+  + +LG
Sbjct: 647  DYNNYGWQVLVASGVVEYIDTLEEETVMIAMTPYDLKQDKEYAYCTTYTHCEIHPAMILG 706

Query: 693  LSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMIS 752
            +   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T   
Sbjct: 707  VCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSM 765

Query: 753  DCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRS 812
            +            L   EL  G N+IVA+  + GYNQEDS+++N +++ERG FRS   RS
Sbjct: 766  E-----------YLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRS 814

Query: 813  YK----AEVDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDI 865
            YK      + ++E Q +   R++   M N           D LD+DG    G  +   D+
Sbjct: 815  YKDSESKRIGDQEEQFEKPNRQTCQGMRN--------ALYDKLDEDGIIAPGLRVSGDDV 866

Query: 866  VIGKY-----ADSGADHSIK----------LKHTERGMVQKVVLSSNDDGKNFSVVSLRQ 910
            VIGK       D   D + K          L+++E G+V +V+L+ N +G  F  + +R 
Sbjct: 867  VIGKTITLPETDDDLDGTTKRYTKRDGSTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS 926

Query: 911  VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA 970
            VR P +GDKF+S HGQKG  G    QE+ PFT +GI PDI+INPHA PSR T G L+E  
Sbjct: 927  VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECI 986

Query: 971  LGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRS 1029
             GK    LG     G    ATPF    +V  I+  L   G+   G E +Y+G TG  + +
Sbjct: 987  QGK----LGSN--KGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINA 1040

Query: 1030 LIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA 1089
             +F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC I+HGA
Sbjct: 1041 QVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGA 1100

Query: 1090 AANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKAN 1147
            A  L ERLF +SD Y++H+C  C    +AN+               C+ C +   I +  
Sbjct: 1101 AQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---------CKGCKNKTQISQVK 1151

Query: 1148 VPYGAKLLCQELFSMGITLKF 1168
            +PY AKLL QEL +M I  + 
Sbjct: 1152 LPYAAKLLFQELMAMNIAPRL 1172


>gi|291401757|ref|XP_002717206.1| PREDICTED: DNA directed RNA polymerase II polypeptide B [Oryctolagus
            cuniculus]
          Length = 1174

 Score =  620 bits (1599), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 428/1241 (34%), Positives = 624/1241 (50%), Gaps = 160/1241 (12%)

Query: 2    DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-D 60
            D DD+  T      DL +E     C     S+F+E GLV  Q++S++EFI+  +Q+   D
Sbjct: 11   DEDDDEITP-----DLWQEA----CWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 61   SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
            +    +       S + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+T
Sbjct: 62   APPIDLQAEAQHASGEVEEPPRYL-LKFEQIYLSKPTHWERDGAPS-PMMPNEARLRNLT 119

Query: 121  YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
            YS+ + V +          T    K G EQ      L  +     IG+IP+M++S  C +
Sbjct: 120  YSAPLYVDI----------TKTVIKEGEEQ------LQTQHQKTFIGKIPIMLRSTYCLL 163

Query: 181  KGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR 234
             G+      E  +C  D GGYFII G+EKV +AQE++    ++V        AY  E + 
Sbjct: 164  NGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRS 223

Query: 235  N-------------RLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDK 281
                           ++ R    +K   I G   V ++ ++  E+PI I+F ALG  SD+
Sbjct: 224  CLENSSRPTSTIWVSMLARGGQGAKKSAI-GQRIVATLPYIKQEVPIIIVFRALGFVSDR 282

Query: 282  EIVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKL 327
            +I+  I +  ED  ++ ++  S+ +A      N    F   R A         +KY  ++
Sbjct: 283  DILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEV 342

Query: 328  IKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNK 387
            ++    P    ++ C             +KA FLGYMV  LL A  GRR+ D+RD + NK
Sbjct: 343  LQKEMLPHVGVSDFC-----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNK 391

Query: 388  RLELAGELLERELKVHIAHARKRMAKALQRD--LYGDRTVR-----PIEYYLDASILTNG 440
            RL+LAG LL        A   + M K L ++  +Y  + +       +E  +   I+++G
Sbjct: 392  RLDLAGPLL--------AFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDG 443

Query: 441  LSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHP 500
            L  + +TG W    K  +  +G+   L R     TL  LRR    +   GK+   R  H 
Sbjct: 444  LKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHN 503

Query: 501  SHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGG 559
            + WG +C   TP+G   GLVKNL +   +S  S   PI E L    ME L + +  ++  
Sbjct: 504  TLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIAD 563

Query: 560  KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILR 618
              K+FV+G W+G+ KD    ++ LR+ RR+ ++  ++V + RD  + E+RI+ DAGRI R
Sbjct: 564  ATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICR 623

Query: 619  PLLVVE---------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLL 669
            PLL+VE         ++ ++K  E  NY++Q L+  G++E + T EEE    A       
Sbjct: 624  PLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD--- 680

Query: 670  KDIEDKKPI---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTT 726
             D+++K+      +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   T
Sbjct: 681  -DLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYIT 738

Query: 727  NPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLG 786
            N  +R+DTL+H L+YPQ+PL  T   +            L   EL  G N+IVA+  + G
Sbjct: 739  NFHVRMDTLAHVLYYPQKPLVTTRSME-----------YLRFRELPAGINSIVAIASYTG 787

Query: 787  YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGR-- 844
            YNQEDS++MNR++++RG FRS   RSYK        Q  ++  D    F K   +  +  
Sbjct: 788  YNQEDSVIMNRSAVDRGFFRSVFYRSYKE-------QESKKGFDQEEVFEKPTRETCQGM 840

Query: 845  ----VDSLDDDGFPFIGANLQSGDIVIGKYAD---------------SGADHSIKLKHTE 885
                 D LDDDG    G  +   D++IGK                  +  D S  L+ +E
Sbjct: 841  RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE 900

Query: 886  RGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQG 945
             G+V +V+++ N +G  F  + +R VR P +GDKF+S HGQKG  G    QE+ PFT +G
Sbjct: 901  TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG 960

Query: 946  IVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQ 1004
            I PDI+INPHA PSR T G L+E   GK   +  KG        ATPF    +V  I+  
Sbjct: 961  ITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGEIGD----ATPFNDAVNVQKISNL 1014

Query: 1005 LHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQP 1064
            L   G+   G E LY+G TG  + S IF+GPT+YQRL HM +DK+  R  GP+  L RQP
Sbjct: 1015 LSDYGYHLRGNEVLYNGFTGRKITSQIFLGPTYYQRLKHMVDDKIHSRARGPIQILNRQP 1074

Query: 1065 VADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVG 1124
            +  R R GG++FGEMERDC IAHGAA  L ERLF  SD YQ+H+C  C  +A        
Sbjct: 1075 MEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAI------- 1127

Query: 1125 GGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
               +     CR C +   I    +PY  KLL QEL SM I 
Sbjct: 1128 ANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIA 1168


>gi|190333344|gb|AAS67502.2| DNA-dependent RNA polymerase II second largest subunit, partial
            [Meyerozyma guilliermondii]
          Length = 1219

 Score =  620 bits (1599), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 412/1237 (33%), Positives = 638/1237 (51%), Gaps = 140/1237 (11%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYAS 85
            C     SFF E GLVS Q++S++EFI++ +Q+        I++     + + + E R   
Sbjct: 23   CWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSRLILDQPAQHTSEEDHENRRYE 82

Query: 86   MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
            + FG++ + KP+   G+G   H MFP+ ARL+N+TYSS + V +  +V      + D   
Sbjct: 83   ITFGKIYISKPTQTEGDG-TTHPMFPQEARLRNLTYSSPLYVDMTKRVLK----SDDNAG 137

Query: 146  TGREQYIQKEVLSDE--TTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFI 197
               E    +E + DE  +T + +G++P+M++S  C ++ +      E  +C +D GGYF+
Sbjct: 138  NEHELEWIEEEIKDEEPSTKVYLGKVPIMLRSKFCMLRDLGEHEFYELKECPYDMGGYFV 197

Query: 198  IKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKR-NRLIVRL-VDMSKFEDI 250
            I G+EKV +AQE+     + V      + +      +S  +R +RLI  + + +   E+ 
Sbjct: 198  INGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALERGSRLISSMQIKLYGREEK 257

Query: 251  KGGEKVL--SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFAS----- 303
                + +  ++ ++  +IPI I+F ALG+  D +I+  I +   D  +L +L        
Sbjct: 258  STSNRTIKATLPYIKEDIPIVIVFRALGIVPDGDILEHICYDANDWQMLEMLKPCVEEGF 317

Query: 304  -IHDADNKCDEF-RKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTK----QK 357
             I + +   D   R+G   +K   ++         +  ++ +   L P++   +    +K
Sbjct: 318  VIQEREVALDFIGRRGALGIKREKRI---------QYAKDILQKELLPNITQDEGFETRK 368

Query: 358  ARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQR 417
            A FLGYMV  LL     R++ D+RD F  KRL+LAG LL    ++      K +   +QR
Sbjct: 369  AFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRILFKKLTKDIYNYMQR 428

Query: 418  DLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLV 477
             +  D+    +   + +  +T+GL  + +TG W    K     +G+   L R     TL 
Sbjct: 429  CVENDKVFN-LTLAVKSQTITDGLRYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLS 487

Query: 478  DLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEP 536
             LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  +  EP
Sbjct: 488  HLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSEP 547

Query: 537  IFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQV 596
            I   L   GME L D    +     +VFV+G W+G  ++    V  +R  RRR ++  +V
Sbjct: 548  ILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHLVDTMRSLRRRGDISPEV 607

Query: 597  EIKRDELQSEVRIFMDAGRILRPLLVV------ENMGKIK-------------------- 630
             I RD  + E +IF DAGR+ RPL +V      E  G++K                    
Sbjct: 608  SIIRDIREKEFKIFTDAGRVYRPLFIVDDDPESETKGELKLQKEHIHKLLNAEYSEEYAT 667

Query: 631  ---SLEGKNYTFQALLDHGIIELVGTEEEE---------------DCCTAWGIKYLLKDI 672
                 E   Y + +L++ G++E V  EEEE                  TA   K L  + 
Sbjct: 668  NEFGEEEGPYGWSSLVNDGVVEYVDAEEEETIMIAMTPEDLEASKSSLTATQQKSLQLEE 727

Query: 673  EDKKPIK------------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQA 720
            ++  P K            FTHCE+  S +LG++  IIPF +H+ + R  YQS     QA
Sbjct: 728  QELDPAKRIKPTNSSTTSTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQS-AMGKQA 786

Query: 721  IGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVA 780
            +G   TN S+R+DT+++ L+YPQ+PL  T              H+  R EL  GQNAIVA
Sbjct: 787  MGVFLTNYSVRMDTMANILYYPQKPLATTR----------AMEHLKFR-ELPAGQNAIVA 835

Query: 781  VNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQS 840
            +  + GYNQEDS++MN++S++RG+FRS   R+Y  +++ ++      + +       ++ 
Sbjct: 836  IACYSGYNQEDSMIMNQSSIDRGLFRSLFFRTY-MDLEKRQGMKALETFEKPSRSDTLRL 894

Query: 841  KIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---------------DSGADHSIKLKHTE 885
            K G  + LDDDG    G  +   DI+IGK                  +  D S  L+ TE
Sbjct: 895  KHGTYEKLDDDGLIAPGIRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTE 954

Query: 886  RGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQG 945
             G+V +V+L++N DG  F  V +R  + P +GDKF+S HGQKG +G     E+ PFT QG
Sbjct: 955  SGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTVGVTYRHEDMPFTSQG 1014

Query: 946  IVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQL 1005
            IVPD++INPHA PSR T   L+E  L K +++L     SGL+  A+P    + +A+++ L
Sbjct: 1015 IVPDLIINPHAIPSRMTVAHLIECLLSK-VSSL-----SGLEGDASPLTDVTAEAVSKLL 1068

Query: 1006 HRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPV 1065
               G+   G E +Y G TG+ + + +F GPT+YQRL HM +DK+  R  GPV  LTRQPV
Sbjct: 1069 REHGYQSRGFEVMYHGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPV 1128

Query: 1066 ADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGG 1125
              R R GG++FGEMERDC+IAHGAA  L ERL   SD++++H+C  C  + +VI  +   
Sbjct: 1129 EGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGVC-GLMSVIANL--- 1184

Query: 1126 GRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSM 1162
              K     CR C +  +I + ++PY AKLL QE  +M
Sbjct: 1185 --KKNQFECRSCKNKTNIYQVHIPYAAKLLFQESMAM 1219


>gi|353243888|emb|CCA75371.1| probable DNA-dependent RNA polymerase II RPB140 (RPB2)
            [Piriformospora indica DSM 11827]
          Length = 1223

 Score =  620 bits (1599), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 420/1226 (34%), Positives = 641/1226 (52%), Gaps = 130/1226 (10%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYAS 85
            C     +FF + GLV  Q++S+NEFI N +Q   +  G+  +E     +     +     
Sbjct: 34   CWTVIAAFFEKRGLVRQQLDSFNEFINNTIQDIVEDSGDLNLEQHEQHTGAETDKSTRHK 93

Query: 86   MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
            ++FGQV L +PS    +G     +FP+ ARL+N+TYS+ + V++  +   Q++V +D+  
Sbjct: 94   IKFGQVYLTRPSVTEKDG-QVSPLFPQEARLRNLTYSATLMVEIVEE--KQEQVPNDEGG 150

Query: 146  TGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV---EKGD---CDFDHGGYFIIK 199
               E+ I   +       + + +IP+M++SD+C +  +   EK D   C  D GGYFII 
Sbjct: 151  WDWER-IPGSIPG--FNRLPLAKIPIMLRSDICALYTIPDPEKYDLNECPDDPGGYFIIS 207

Query: 200  GAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKRNRLIVRLVDMSKF----EDI 250
            G EKV +AQE++    ++V      + + +    +S  +R   ++    +  F    E  
Sbjct: 208  GQEKVLIAQERMAGNHVYVFAKGQPSPISFLAEIRSVPERGGKLLSSFQVKLFHKGIEKQ 267

Query: 251  KGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNK 310
             GG    SV ++ T++PIWILF A+GV +D++I+  I +   D  +L +L   I      
Sbjct: 268  SGGAIRASVPYIKTDVPIWILFRAMGVLADRDILEHICYDGHDDQMLEMLKPCI------ 321

Query: 311  CDE---FRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLH----GTKQ 356
             DE    +    AL ++ +  +G T  P  S E       E +   L P +        +
Sbjct: 322  -DEGFVVQHREIALDFIGR--RGNT--PTISRERRIRYAQEIIQKELLPHISMEEGNEAR 376

Query: 357  KARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQ 416
            KA F+GYM+  LL A   RR+ D+RD F  KRL+LAG LL    ++      K + + LQ
Sbjct: 377  KAYFVGYMIHRLLLAALDRREIDDRDHFGKKRLDLAGPLLSTLFRMLFRKVVKDVYRYLQ 436

Query: 417  RDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTL 476
            + +   +    +   +    ++NGL  + +TG W          +G+   L R     TL
Sbjct: 437  KCVESGKAFD-VGRAIKLGTISNGLKYSLATGNWGDQQNAMSSKAGVSQVLNRYTYASTL 495

Query: 477  VDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILE 535
              LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  S   
Sbjct: 496  SHLRRTNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMACISVGSYSA 555

Query: 536  PIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQ 595
            P+ E L   GME L ++A  S     KVF++G W+GV ++    ++ L+  RR + +  +
Sbjct: 556  PVGEFLDEWGMEALEENAQ-SDRPSTKVFLNGVWMGVHREPTQLLNTLKHLRRTEAIHPE 614

Query: 596  VEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKSLE-----------GKNYTFQALLD 644
            V + RD  + E+RI+ D+GR+ RPL VVE    + + E              Y +  L  
Sbjct: 615  VSVVRDIREKELRIYTDSGRVCRPLFVVEKDKLLITPEQVARLRDEKDDPAGYRWDNLFK 674

Query: 645  HGIIELVGTEEEED---CCT-------AWGIKYLLKDIED-----KKPIK---FTHCELD 686
             G++EL+  EEEE    C +       + G  Y  +D+ D     K  IK   ++HCE+ 
Sbjct: 675  DGVVELLDAEEEETVMICMSPEDLDARSSGQVYHTEDMYDPSSRVKTIIKAGSYSHCEIH 734

Query: 687  MSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPL 746
             S +LG+   I+PF +H+ + R  YQS     QA+G   +N  +R+DT+++ L+YPQ+PL
Sbjct: 735  PSMILGVCASIVPFPDHNQSPRNTYQS-AMGKQAMGISLSNFLVRMDTMANILYYPQKPL 793

Query: 747  FRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFR 806
              T   + L              +L  GQNAIVA+  + GYNQEDS++MN++S++RG+FR
Sbjct: 794  ATTRALEWLK-----------FRDLPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 842

Query: 807  SEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIV 866
            S + RSY  +++    Q+     +       ++ K G  D LDDDG    G N+   DI+
Sbjct: 843  SIYYRSY-MDMEKTAGQITLEEFEKPSRDTTLRMKHGNYDKLDDDGLIAPGMNVIGEDII 901

Query: 867  IGKYA----DSGA-----------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQV 911
            IGK A    DS             D S  LK TE G++  V+++ + +G  F  + +R  
Sbjct: 902  IGKTAPLPPDSQELGQRTDRHTRRDVSTPLKSTESGIIDHVLITVDGEGSKFVKIRVRST 961

Query: 912  RSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAAL 971
            R P +GDKF+S HGQKG +G L  QE+ PF+  GIVPD++INPHA PSR T G L+E  L
Sbjct: 962  RIPQVGDKFASRHGQKGTIGILYRQEDMPFSADGIVPDLIINPHAIPSRMTIGHLVECLL 1021

Query: 972  GKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLI 1031
             K +A L     +G +  ATPF   +V+ ++  L  AG+   G E +Y G TG+ +++ +
Sbjct: 1022 SK-VATL-----NGQEGDATPFTDLTVEQVSHALRAAGYQSRGLEVMYHGHTGKKLQAQV 1075

Query: 1032 FIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEME-------RDCL 1084
            ++GPT+YQRL HM EDK+  R  GPV  LTRQPV  R R GG++FGEME       RDC+
Sbjct: 1076 YLGPTYYQRLKHMVEDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMEASQNSLIRDCM 1135

Query: 1085 IAHGAAANLHERLFTLSDSYQMHICRKC--KNVANVIQRVVGGGRKVRGPYCRICDSGDD 1142
            I+HG AA L ERLF  SD+Y++H+C  C    +AN+         K +   CR C +   
Sbjct: 1136 ISHGIAAFLKERLFDASDAYRLHVCDICGLTAIANL---------KKQSFECRSCKNKTA 1186

Query: 1143 IVKANVPYGAKLLCQELFSMGITLKF 1168
            + +  +PY AKLL QEL +M I  + 
Sbjct: 1187 VSQLYIPYAAKLLIQELQAMNIAARL 1212


>gi|417413545|gb|JAA53095.1| Putative rna polymerase i second largest subunit, partial [Desmodus
            rotundus]
          Length = 1144

 Score =  620 bits (1598), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 421/1211 (34%), Positives = 614/1211 (50%), Gaps = 151/1211 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPSKKGEGEWRYASMRFGQ 90
            S+F+E GLV  Q++S++EFI+  +Q+   D+    +       S + E   RY  ++F Q
Sbjct: 2    SYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYL-LKFEQ 60

Query: 91   VTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
            + L KP+ +  +G     M P  ARL+N+TYS+ + V +          T    K G EQ
Sbjct: 61   IYLSKPTHWERDGAPS-PMMPNEARLRNLTYSAPLYVDI----------TKTVIKEGEEQ 109

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFIIKGAEKV 204
                  L  +     IG+IP+M++S  C + G+      E  +C  D GGYFII G+EKV
Sbjct: 110  ------LQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKV 163

Query: 205  FVAQEQICLKRLWVSNSMGWTVAYKSENKRN-------------RLIVRLVDMSKFEDIK 251
             +AQE++    ++V        AY  E +                ++ R    +K   I 
Sbjct: 164  LIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAI- 222

Query: 252  GGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA---- 307
            G   V ++ ++  E+PI I+F ALG  SD++I+  I +  ED  ++ ++  S+ +A    
Sbjct: 223  GQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQ 282

Query: 308  -DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQK 357
              N    F   R A         +KY  ++++    P    ++ C             +K
Sbjct: 283  EQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFC-----------ETKK 331

Query: 358  ARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQR 417
            A FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL        A   + M K L +
Sbjct: 332  AYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLL--------AFLFRGMFKNLLK 383

Query: 418  D--LYGDRTVR-----PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRA 470
            +  +Y  + +       +E  +   I+++GL  + +TG W    K  +  +G+   L R 
Sbjct: 384  EVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRL 443

Query: 471  NPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVS 530
                TL  LRR    +   GK+   R  H + WG +C   TP+G   GLVKNL +   +S
Sbjct: 444  TFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS 503

Query: 531  T-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRR 589
              S   PI E L    ME L + +  ++    K+FV+G W+G+ KD    ++ LR+ RR+
Sbjct: 504  VGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQ 563

Query: 590  KEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVE---------NMGKIKSLEGKNYTF 639
             ++  ++V + RD  + E+RI+ DAGRI RPLL+VE         ++ ++K  E  NY++
Sbjct: 564  MDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSW 623

Query: 640  QALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPI---KFTHCELDMSFLLGLSCG 696
            Q L+  G++E + T EEE    A        D+++K+      +THCE+  S +LG+   
Sbjct: 624  QDLVASGVVEYIDTLEEETVMLAM----TPDDLQEKEVAYCSTYTHCEIHPSMILGVCAS 679

Query: 697  IIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLG 756
            IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YPQ+PL  T   +   
Sbjct: 680  IIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSME--- 735

Query: 757  KPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAE 816
                     L   EL  G N+IVA+  + GYNQEDS++MNR++++RG FRS   RSYK  
Sbjct: 736  --------YLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKE- 786

Query: 817  VDNKEMQVKRRSSDDMVNFGKIQSKIGR------VDSLDDDGFPFIGANLQSGDIVIGKY 870
                  Q  ++  D    F K   +  +       D LDDDG    G  +   D++IGK 
Sbjct: 787  ------QESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKT 840

Query: 871  AD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPC 915
                             +  D S  L+ +E G+V +V+++ N +G  F  + +R VR P 
Sbjct: 841  VTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQ 900

Query: 916  LGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGI 975
            +GDKF+S HGQKG  G    QE+ PFT +GI PDI+INPHA PSR T G L+E   GK  
Sbjct: 901  IGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGK-- 958

Query: 976  AALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIG 1034
             +  KG        ATPF    +V  I+  L   G+   G E LY+G TG  + S IFIG
Sbjct: 959  VSANKGEIGD----ATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIG 1014

Query: 1035 PTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLH 1094
            PT+YQRL HM +DK+  R  GP+  L RQP+  R R GG++FGEMERDC IAHGAA  L 
Sbjct: 1015 PTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLR 1074

Query: 1095 ERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKL 1154
            ERLF  SD YQ+H+C  C  +A           +     CR C +   I    +PY  KL
Sbjct: 1075 ERLFEASDPYQVHVCNLCGIMAI-------ANTRTHTYECRGCRNKTQISLVRMPYACKL 1127

Query: 1155 LCQELFSMGIT 1165
            L QEL SM I 
Sbjct: 1128 LFQELMSMSIA 1138


>gi|268574492|ref|XP_002642223.1| C. briggsae CBR-RPB-2 protein [Caenorhabditis briggsae]
          Length = 1194

 Score =  620 bits (1598), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 406/1232 (32%), Positives = 637/1232 (51%), Gaps = 131/1232 (10%)

Query: 2    DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-D 60
            D +D  ++D T+  ++  +  +  C     ++F+E GLV  Q++S++EF++  +Q+   D
Sbjct: 12   DGNDEEYSDETA--EISPDAWQEACWVVISAYFDEKGLVRQQLDSFDEFVQMNVQRIVED 69

Query: 61   SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
            S    +           E   ++ S++F Q+ L KP+ +  +G     M P  ARL+N+T
Sbjct: 70   SPPVELQSENQHLGNDMENPAKF-SLKFNQIYLSKPTHWEKDGA-PMPMMPNEARLRNLT 127

Query: 121  YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
            Y+S + V +       K VT D  ++  E+  +K         + +G++PVM++S  C +
Sbjct: 128  YASPLYVDI------TKVVTRD--ESVNEKVYEK---------VFVGKVPVMLRSSYCML 170

Query: 181  KGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKS---- 230
              +      E  +C  D GGYF+I G+EKV +AQE++    ++V +      A+K+    
Sbjct: 171  SNMTDRDLTELNECPLDPGGYFVINGSEKVLIAQEKMATNTVYVFSMKDGKYAFKTECRS 230

Query: 231  --ENKRNRLIVRLVDM-----SKFEDIKGGEKVLSVY-FLSTEIPIWILFFALGVSSDKE 282
              EN         V+M        +    G++++ +  ++  EIPI I+F ALG  SD++
Sbjct: 231  CLENSSRPTSTMWVNMLARGGGGGKKTAMGQRIIGILPYIKQEIPIMIVFRALGFVSDRD 290

Query: 283  IVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLI 328
            I+  I +  ED  ++ ++  S+ +A      N    F   R A         +KY  +++
Sbjct: 291  ILGHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGAKPGVTREQRIKYAREIL 350

Query: 329  KGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKR 388
            +    P    +E C             +KA F+GYMV  LL A  GRR+ D+RD   NKR
Sbjct: 351  QKELLPHVGVSEHC-----------ETKKAFFIGYMVHRLLLAALGRRELDDRDHIGNKR 399

Query: 389  LELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTG 448
            L+LAG LL    +    +  K M    Q+ +  +     ++  +  S +T GL+ + +TG
Sbjct: 400  LDLAGPLLAFLFRALFRNLLKEMRMTAQKYINKNDDF-ALDVCVKTSTITRGLAYSLATG 458

Query: 449  AWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICF 508
             W    K  +  +G+   L R     TL  LRR    +   GK+   R  H + WG +C 
Sbjct: 459  NWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRANSPIGREGKLAKPRQLHNTQWGMVCP 518

Query: 509  LSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDG 567
              TP+G+  GLVKNL +   +S  S+ EPI E L    ME L + +  ++    K+FV+G
Sbjct: 519  AETPEGQAVGLVKNLALMAYISVGSLPEPILEFLEEWSMENLEEVSPSAIADATKIFVNG 578

Query: 568  DWIGVCKDSLSFVSELRRKRRRKE-LPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE-- 624
             W+G+ ++    +  L++ RR+ + + ++V + RD    E+RI+ DAGR+ RPLL+VE  
Sbjct: 579  AWVGIHREPELLMDTLKKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVEKQ 638

Query: 625  -------NMGKIKSL-EGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKK 676
                   ++  +K + E K YT+  L+ +G++EL+ + EEE    A     + +D+    
Sbjct: 639  KLALRKRHIDLLKDVDETKKYTWSDLVGNGVVELIDSMEEETSMIAM----MPEDLRSGG 694

Query: 677  PI-KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTL 735
                +THCE+  + +LG+   IIPF +H+ + R  YQS     QA+G  TTN  +R+DTL
Sbjct: 695  YCDTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYTTNFHVRMDTL 753

Query: 736  SHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVM 795
            +H L+YPQ+PL  T   +            L   EL  G NAIVA+  + GYNQEDS++M
Sbjct: 754  AHVLYYPQKPLVTTRSME-----------YLRFNELPAGINAIVAILSYSGYNQEDSVIM 802

Query: 796  NRASLERGMFRSEHIRSYK---AEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDG 852
            N ++++RG+FRS   RSY+   A +DN   ++  + + +  +      +    D LD+DG
Sbjct: 803  NNSAIDRGLFRSVFYRSYRDNEANIDNANEELIEKPTREKCS----GMRHSLYDKLDEDG 858

Query: 853  FPFIGANLQSGDIVIGKYA-------DSGA--------DHSIKLKHTERGMVQKVVLSSN 897
                G  +   D++IGK         D  A        D S  L+ +E G+V +V+LS N
Sbjct: 859  IISPGMRVSGDDVIIGKTVALPDIDDDLDATGKKYPKRDASTFLRSSETGIVDQVMLSLN 918

Query: 898  DDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAF 957
            +DG  F  + +R VR P +GDKF+S HGQKG +G +  QE+ PFT +G+ PDI+INPHA 
Sbjct: 919  NDGNKFVKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDIIINPHAV 978

Query: 958  PSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFA-TPSVDAITEQLHRAGFSKWGTE 1016
            PSR T G L+E   GK  A  G+         ATPF  T +V  I+  L   G+   G E
Sbjct: 979  PSRMTIGHLIECLQGKLSANKGE------IGDATPFNDTVNVQKISGLLCEYGYHLRGNE 1032

Query: 1017 RLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKF 1076
             +Y+G TG+ + + IF GPT+YQRL HM +DK+  R  GP+  + RQP+  R R GG++F
Sbjct: 1033 VMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIHSRARGPIQMMNRQPMEGRARDGGLRF 1092

Query: 1077 GEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRI 1136
            GEMERDC I+HGA   L ERLF +SD Y +++C  C         +V    +     C+ 
Sbjct: 1093 GEMERDCQISHGATQFLRERLFEVSDPYHVYVCNNCG-------LIVVANLRTNSFECKA 1145

Query: 1137 CDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
            C +   +    +PY  KLL QEL SM I  + 
Sbjct: 1146 CRNKTQVSAVRIPYACKLLFQELMSMSIAPRL 1177


>gi|320592188|gb|EFX04627.1| DNA-dependent RNA polymerase 2 rpb140 [Grosmannia clavigera kw1407]
          Length = 1266

 Score =  620 bits (1598), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 430/1288 (33%), Positives = 643/1288 (49%), Gaps = 179/1288 (13%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDP-S 74
            DL E        K   ++F++  LVS QI+S+NEF    +Q   D      ++    P +
Sbjct: 19   DLDEGITPEDSWKIISAYFDKKSLVSQQIDSFNEFTTTTVQSLIDEHSLLTLDQSNPPIA 78

Query: 75   KKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYS----SRMKVKVQ 130
                 + R   ++FG + + KP F  G+G     + P   R +N+TYS    +R+  KV 
Sbjct: 79   SDRPVKLRRYEIKFGNIMVSKPQFAEGDG-RVSTLTPYECRDRNLTYSCPIYARITKKVS 137

Query: 131  FQV---------------------YTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRI 169
              V                         R+  ++  +    Y + +   D    + +GR+
Sbjct: 138  LAVDEPIPDDELDEEQIEEMQRTGEQPTRIVWEEEPSDLPDYEKDKADEDMKDMVFMGRL 197

Query: 170  PVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV----- 218
            P+MVKS +C +   ++       +C +D GGYFII G+EKV +AQE+     + V     
Sbjct: 198  PIMVKSKICHLAYEDEDGLFLLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKAQ 257

Query: 219  SNSMGWTVAYKSE-NKRNRLIVRLVDM--SKFEDIKG--GEKV-LSVYFLSTEIPIWILF 272
             +   +T   +S   K +RLI  L  M  +K +  +G  G+ V  ++ ++ +E+PI ++F
Sbjct: 258  PSKFSYTAEIRSALEKGSRLISSLSIMLVAKGDTGRGSFGQTVHTTLPYIKSELPIAVVF 317

Query: 273  FALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD-----EF--RKGRNA----- 320
             ALGV SD++I+N I +   D  +L +L   I +A    D     +F  ++G+N+     
Sbjct: 318  RALGVVSDEDILNHICYDRNDSQMLEMLRPCIEEAFCIQDREVALDFIGKRGQNSHGISR 377

Query: 321  ---LKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRK 377
               ++    +++    P    +E C             +KA FLGYMV  LLQ   GRR 
Sbjct: 378  KDRVRAARDILQKEMLPHISQSEGC-----------ETRKAFFLGYMVHKLLQCALGRRD 426

Query: 378  CDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASIL 437
             D+RD F  KRL+LAG LL +  +  I    + +   L+R +   +    +   +    L
Sbjct: 427  VDDRDHFGKKRLDLAGSLLAKLFRGIIRKMYQELMNHLKRCVDTGKHF-DLRVGIRHQTL 485

Query: 438  TNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARY 497
            TNGL  + +TG W    K     +G+   L R     TL  LRRT   +   GK+   R 
Sbjct: 486  TNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFSSTLSHLRRTNTPIGRDGKLAKPRQ 545

Query: 498  PHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYS 556
             H +HWG +C   TP+G+ CGLVKNL +   VS  +  EPI E +    ME L +     
Sbjct: 546  LHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPAEPIVEFMIARNMEVLEEYEPLR 605

Query: 557  LGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRI 616
                 K+FV+G W+GV +D    VS ++  RR+  + ++V + RD    E +IF DAGR+
Sbjct: 606  YPNATKIFVNGSWVGVHQDPKHLVSLVQGLRRKGVIQSEVSLVRDIRDREFKIFSDAGRV 665

Query: 617  LRPLLVVE-------------------NMGKIKSLEG------KNYTFQALLDHGIIELV 651
            +RPL  +E                   ++ ++ + EG      K + +  + D G IE +
Sbjct: 666  MRPLFAIEQEDNADSGVEKGMLVLTKEHVQRLDADEGLSKDDPKYFGWDGICDAGAIEYL 725

Query: 652  GTEEEED---CCTAWGIK--------YLLKDIEDKKPIK-------------FTHCELDM 687
              EEEE    C T   +         Y+L D  + + I              +THCE+  
Sbjct: 726  DAEEEETAMICMTPEDLDNYRMQKAGYVLPDETNDEDINKRVKTKMNPTTHMYTHCEIHP 785

Query: 688  SFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLF 747
            S LLG+   IIPF +H+ + R  YQS     QA+GF  TN   R+DT+++ L+YPQ+PL 
Sbjct: 786  SMLLGICASIIPFPDHNQSPRNTYQS-AMGKQAMGFFLTNYPRRMDTMANVLYYPQKPLA 844

Query: 748  RTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRS 807
             T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS
Sbjct: 845  TTRSME-----------YLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRS 893

Query: 808  EHIRSYKAEVDNKEMQVKRRSSDDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQ 861
               R+Y    D++    KR   + +  F K      ++ K G  D LDDDG    G  + 
Sbjct: 894  LFFRAY---TDSE----KRVGINFVETFEKPFRSDTLRLKHGTYDKLDDDGIVAPGVRVS 946

Query: 862  SGDIVIGKYADSGADH---------------SIKLKHTERGMVQKVVLSSNDDGKNFSVV 906
              DI+IGK +    DH               S  L+ TE G++ +VV+++N D   +  V
Sbjct: 947  GEDIIIGKTSPINPDHQEMGQRTQAHVKRDASTPLRSTESGIIDQVVVTTNQDNLRYVKV 1006

Query: 907  SLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQL 966
             +R  + P +GDKF+S HGQKG +G     E+ PFT +GI+PDI+INPHA PSR T   L
Sbjct: 1007 RVRTTKIPQIGDKFASRHGQKGTIGVTYRSEDMPFTTEGILPDIIINPHAIPSRMTIAHL 1066

Query: 967  LEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEM 1026
            +E  L K +A L      G++  ATPF   +VD+++  L   G+   G E +Y G TG  
Sbjct: 1067 IECLLSK-VATL-----KGMEGDATPFTDVTVDSVSGLLREHGYQSRGFEIMYHGHTGRK 1120

Query: 1027 VRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIA 1086
            +R+ +F GPT+YQRL HM +DK+  R  GPV  +TRQPV  R R GG++FGEMERDC+IA
Sbjct: 1121 LRAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIA 1180

Query: 1087 HGAAANLHERLFTLSDSYQMHICRKC---KNVANVIQRVVGGGRKVRGPYCRICDSGDDI 1143
            HGAAA L ERLF +SD+Y++HIC  C     +AN+ ++            CR C +   I
Sbjct: 1181 HGAAAFLKERLFEVSDAYRVHICEICGLMTPIANLTKQSF---------ECRPCKNKTRI 1231

Query: 1144 VKANVPYGAKLLCQELFSMGITLKFDTE 1171
             +  +PY AKLL QEL +M I  +  T+
Sbjct: 1232 AQVQIPYAAKLLFQELAAMNIAARMFTD 1259


>gi|194379208|dbj|BAG58155.1| unnamed protein product [Homo sapiens]
          Length = 1167

 Score =  620 bits (1598), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 429/1241 (34%), Positives = 623/1241 (50%), Gaps = 160/1241 (12%)

Query: 2    DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-D 60
            D DD+  T      DL +E     C     S+F+E GLV  Q++S++EFI+  +Q+   D
Sbjct: 4    DEDDDEITP-----DLWQEA----CWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 54

Query: 61   SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
            +    +       S + E   RY  ++F Q+ L KP+    +G     M P  ARL+N+T
Sbjct: 55   APPIDLQAEAQHASGEVEEPPRYL-LKFEQIYLSKPTHRERDGAPS-PMMPNEARLRNLT 112

Query: 121  YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
            YS+ + V +          T    K G EQ      L  +     IG+IP+M++S  C +
Sbjct: 113  YSAPLYVDI----------TKTVIKEGEEQ------LQTQHQKTFIGKIPIMLRSTYCLL 156

Query: 181  KGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR 234
             G+      E  +C  D GGYFII G+EKV +AQE++    ++V        AY  E + 
Sbjct: 157  NGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRS 216

Query: 235  N-------------RLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDK 281
                           ++ R    +K   I G   V ++ ++  E+PI I+F ALG  SD+
Sbjct: 217  CLENSSRPTSTIWVSMLARGGQGAKKSAI-GQRIVATLPYIKQEVPIIIVFRALGFVSDR 275

Query: 282  EIVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKL 327
            +I+  I +  ED  ++ ++  S+ +A      N    F   R A         +KY  ++
Sbjct: 276  DILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEV 335

Query: 328  IKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNK 387
            ++    P    ++ C             +KA FLGYMV  LL A  GRR+ D+RD + NK
Sbjct: 336  LQKEMLPHVGVSDFC-----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNK 384

Query: 388  RLELAGELLERELKVHIAHARKRMAKALQRD--LYGDRTVR-----PIEYYLDASILTNG 440
            RL+LAG LL        A   + M K L ++  +Y  + +       +E  +   I+++G
Sbjct: 385  RLDLAGPLL--------AFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDG 436

Query: 441  LSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHP 500
            L  + +TG W    K  +  +G+   L R     TL  LRR    +   GK+   R  H 
Sbjct: 437  LKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHN 496

Query: 501  SHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGG 559
            + WG +C   TP+G   GLVKNL +   +S  S   PI E L    ME L + +  ++  
Sbjct: 497  TLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIAD 556

Query: 560  KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILR 618
              K+FV+G W+G+ KD    ++ LR+ RR+ ++  ++V + RD  + E+RI+ DAGRI R
Sbjct: 557  ATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICR 616

Query: 619  PLLVVE---------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLL 669
            PLL+VE         ++ ++K  E  NY++Q L+  G++E + T EEE    A       
Sbjct: 617  PLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD--- 673

Query: 670  KDIEDKKPI---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTT 726
             D+++K+      +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   T
Sbjct: 674  -DLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYIT 731

Query: 727  NPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLG 786
            N  +R+DTL+H L+YPQ+PL  T   +            L   EL  G N+IVA+  + G
Sbjct: 732  NFHVRMDTLAHVLYYPQKPLVTTRSME-----------YLRFRELPAGINSIVAIASYTG 780

Query: 787  YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGR-- 844
            YNQEDS++MNR++++RG FRS   RSYK        Q  ++  D    F K   +  +  
Sbjct: 781  YNQEDSVIMNRSAVDRGFFRSVFYRSYKE-------QESKKGFDQEEVFEKPTRETCQGM 833

Query: 845  ----VDSLDDDGFPFIGANLQSGDIVIGKYAD---------------SGADHSIKLKHTE 885
                 D LDDDG    G  +   D++IGK                  +  D S  L+ +E
Sbjct: 834  RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE 893

Query: 886  RGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQG 945
             G+V +V+++ N +G  F  + +R VR P +GDKF+S HGQKG  G    QE+ PFT +G
Sbjct: 894  TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG 953

Query: 946  IVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQ 1004
            I PDI+INPHA PSR T G L+E   GK   +  KG        ATPF    +V  I+  
Sbjct: 954  ITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGEIGD----ATPFNDAVNVQKISNL 1007

Query: 1005 LHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQP 1064
            L   G+   G E LY+G TG  + S IFIGPT+YQRL HM +DK+  R  GP+  L RQP
Sbjct: 1008 LSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQP 1067

Query: 1065 VADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVG 1124
            +  R R GG++FGEMERDC IAHGAA  L ERLF  SD YQ+H+C  C  +A        
Sbjct: 1068 MEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAI------- 1120

Query: 1125 GGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
               +     CR C +   I    +PY  KLL QEL SM I 
Sbjct: 1121 ANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIA 1161


>gi|194209129|ref|XP_001916826.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB2-like [Equus caballus]
          Length = 1174

 Score =  620 bits (1598), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 428/1241 (34%), Positives = 624/1241 (50%), Gaps = 160/1241 (12%)

Query: 2    DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-D 60
            D DD+  T      DL +E     C     S+F+E GLV  Q++S++EFI+  +Q+   D
Sbjct: 11   DEDDDEITP-----DLWQEA----CWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 61   SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
            +    +       S + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+T
Sbjct: 62   APPIDLQAEAQHASGEVEEPPRYL-LKFEQIYLSKPTHWERDGAPS-PMMPNEARLRNLT 119

Query: 121  YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
            YS+ + V +          T    K G EQ      L  +     IG+IP+M++S  C +
Sbjct: 120  YSAPLYVDI----------TKTVIKEGEEQ------LQTQHQKTFIGKIPIMLRSTYCLL 163

Query: 181  KGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR 234
             G+      E  +C  D GGYFII G+EKV +AQE++    ++V        AY  E + 
Sbjct: 164  NGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRS 223

Query: 235  N-------------RLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDK 281
                           ++ R    +K   I G   V ++ ++  E+PI I+F ALG  SD+
Sbjct: 224  CLENSSRPTSTIWVSMLARGGQGAKKSAI-GQRIVATLPYIKQEVPIIIVFRALGFVSDR 282

Query: 282  EIVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKL 327
            +I+  I +  ED  ++ ++  S+ +A      N    F   R A         +KY  ++
Sbjct: 283  DILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEV 342

Query: 328  IKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNK 387
            ++    P    ++ C             +KA FLGYMV  LL A  GRR+ D+RD + NK
Sbjct: 343  LQKEMLPHVGVSDFC-----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNK 391

Query: 388  RLELAGELLERELKVHIAHARKRMAKALQRD--LYGDRTVR-----PIEYYLDASILTNG 440
            RL+LAG LL        A   + M K L ++  +Y  + +       ++  +   I+++G
Sbjct: 392  RLDLAGPLL--------AFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLQLAIKTRIISDG 443

Query: 441  LSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHP 500
            L  + +TG W    K  +  +G+   L R     TL  LRR    +   GK+   R  H 
Sbjct: 444  LKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHN 503

Query: 501  SHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGG 559
            + WG +C   TP+G   GLVKNL +   +S  S   PI E L    ME L + +  ++  
Sbjct: 504  TLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIAD 563

Query: 560  KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILR 618
              K+FV+G W+G+ KD    ++ LR+ RR+ ++  ++V + RD  + E+RI+ DAGRI R
Sbjct: 564  ATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICR 623

Query: 619  PLLVVE---------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLL 669
            PLL+VE         ++ ++K  E  NY++Q L+  G++E + T EEE    A       
Sbjct: 624  PLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD--- 680

Query: 670  KDIEDKKPI---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTT 726
             D+++K+      +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   T
Sbjct: 681  -DLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYIT 738

Query: 727  NPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLG 786
            N  +R+DTL+H L+YPQ+PL  T   +            L   EL  G N+IVA+  + G
Sbjct: 739  NFHVRMDTLAHVLYYPQKPLVTTRSME-----------YLRFRELPAGINSIVAIASYTG 787

Query: 787  YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGR-- 844
            YNQEDS++MNR++++RG FRS   RSYK        Q  ++  D    F K   +  +  
Sbjct: 788  YNQEDSVIMNRSAVDRGFFRSVFYRSYKE-------QESKKGFDQEEVFEKPTRETCQGM 840

Query: 845  ----VDSLDDDGFPFIGANLQSGDIVIGKYAD---------------SGADHSIKLKHTE 885
                 D LDDDG    G  +   D++IGK                  +  D S  L+ +E
Sbjct: 841  RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE 900

Query: 886  RGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQG 945
             G+V +V+++ N +G  F  + +R VR P +GDKF+S HGQKG  G    QE+ PFT +G
Sbjct: 901  TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG 960

Query: 946  IVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQ 1004
            I PDI+INPHA PSR T G L+E   GK   +  KG        ATPF    +V  I+  
Sbjct: 961  ITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGEIGD----ATPFNDAVNVQKISNL 1014

Query: 1005 LHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQP 1064
            L   G+   G E LY+G TG  + S IFIGPT+YQRL HM +DK+  R  GP+  L RQP
Sbjct: 1015 LSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQP 1074

Query: 1065 VADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVG 1124
            +  R R GG++FGEMERDC IAHGAA  L ERLF  SD YQ+H+C  C  +A        
Sbjct: 1075 MEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAI------- 1127

Query: 1125 GGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
               +     CR C +   I    +PY  KLL QEL SM I 
Sbjct: 1128 ANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIA 1168


>gi|348542471|ref|XP_003458708.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Oreochromis
            niloticus]
          Length = 1174

 Score =  620 bits (1598), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 425/1239 (34%), Positives = 628/1239 (50%), Gaps = 146/1239 (11%)

Query: 2    DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-D 60
            D DD+  T      DL +E     C     S+F+E GLV  Q++S++EFI+  +Q+   D
Sbjct: 11   DEDDDEITP-----DLWQEA----CWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 61   SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
            +    +       S + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+T
Sbjct: 62   APPIDLQAEAQHTSGEVEEPPRYL-LKFEQIYLSKPTHWERDGAPS-PMMPNEARLRNLT 119

Query: 121  YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
            YS+ + V +          T    K G +Q      L  +     IG+IP+M++S  C +
Sbjct: 120  YSAPLYVDI----------TKTIIKEGEDQ------LQTQHQKTFIGKIPIMLRSTYCLL 163

Query: 181  KGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE--- 231
             G+      E  +C  D GGYFII G+EKV +AQE++    ++V        AY +E   
Sbjct: 164  SGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTAECRS 223

Query: 232  ----NKRNRLIVRLVDMSK----FEDIKGGEKVLSVY-FLSTEIPIWILFFALGVSSDKE 282
                + R    + +  M++     +    G++++S   ++  E+PI I+F ALG  SD++
Sbjct: 224  CLENSSRPTSTIWVSMMARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRD 283

Query: 283  IVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLI 328
            I+  I +  +D  ++ ++  S+ +A      N    F   R A         +KY  +++
Sbjct: 284  ILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVL 343

Query: 329  KGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKR 388
            +    P    ++ C             +KA FLGYMV  LL A  GRR+ D+RD + NKR
Sbjct: 344  QKEMLPHVGVSDFC-----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKR 392

Query: 389  LELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTG 448
            L+LAG LL    +    +  K +    Q+ +   +    +E  +   I+++GL  + +TG
Sbjct: 393  LDLAGPLLAFLFRGMFKNLLKEIRIYAQKFIDRGKDFN-LELAIKTRIISDGLKYSLATG 451

Query: 449  AWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICF 508
             W    K  +  +G+   L R     TL  LRR    +   GK+   R  H + WG +C 
Sbjct: 452  NWGDVKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMVCP 511

Query: 509  LSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDG 567
              TP+G   GLVKNL +   +S  S   PI E L    ME L + +  ++    K+FV+G
Sbjct: 512  AETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNG 571

Query: 568  DWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVE-- 624
             W+G+ KD    ++ LR+ RR+ ++  ++V + RD  + E+RI+ DAGRI RPLL+VE  
Sbjct: 572  CWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQ 631

Query: 625  -------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKP 677
                   ++ ++K  E  NY++Q L+  G++E + T EEE    A        D+++K  
Sbjct: 632  KLLLKRRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD----DLQEKGV 687

Query: 678  I---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDT 734
                 +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DT
Sbjct: 688  AYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDT 746

Query: 735  LSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLV 794
            L+H L+YPQ+PL  T   +            L   EL  G N+IVA+  + GYNQEDS++
Sbjct: 747  LAHVLYYPQKPLVTTRSME-----------YLRFRELPAGINSIVAIASYTGYNQEDSVI 795

Query: 795  MNRASLERGMFRSEHIRSYKAE-----VDNKEMQVK--RRSSDDMVNFGKIQSKIGRVDS 847
            MNR++++RG FRS   RSYK +      D +E+  K  R +   M        +    D 
Sbjct: 796  MNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGM--------RHAIYDK 847

Query: 848  LDDDGFPFIGANLQSGDIVIGKYAD---------------SGADHSIKLKHTERGMVQKV 892
            LDDDG    G  +   D++IGK                  +  D S  L+ +E G+V +V
Sbjct: 848  LDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRTSETGIVDQV 907

Query: 893  VLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVI 952
            +++ N +G  F  + +R VR P +GDKF+S HGQKG  G    QE+ PFT +GI PDI+I
Sbjct: 908  MVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIII 967

Query: 953  NPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFS 1011
            NPHA PSR T G L+E   GK   +  KG        ATPF    +V  ++  L   G+ 
Sbjct: 968  NPHAIPSRMTVGHLIECLQGK--VSANKGEIGD----ATPFNDAVNVQKVSNLLSEYGYH 1021

Query: 1012 KWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRF 1071
              G E LY+G TG  + S IFIGPT+YQRL HM +DK+  R  GPV  L RQP+  R R 
Sbjct: 1022 LRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRD 1081

Query: 1072 GGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRG 1131
            GG++FGEMERDC IAHGAA  L ERLF  SD YQ+H+C  C  +A           +   
Sbjct: 1082 GGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAI-------ANTRTHT 1134

Query: 1132 PYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
              CR C +   I    +PY  KLL QEL SM I  +  T
Sbjct: 1135 YECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMT 1173


>gi|294874302|ref|XP_002766888.1| RNA polymerase beta subunit, putative [Perkinsus marinus ATCC 50983]
 gi|239868263|gb|EEQ99605.1| RNA polymerase beta subunit, putative [Perkinsus marinus ATCC 50983]
          Length = 1171

 Score =  620 bits (1598), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 406/1159 (35%), Positives = 602/1159 (51%), Gaps = 111/1159 (9%)

Query: 75   KKGEGEWRYAS--MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQ 132
            ++G G +  +S  + FGQ++L+KP+    +G     + P  ARL+N+TYSS + V V   
Sbjct: 54   REGPGVYMDSSFPVEFGQLSLNKPTVEEVDGA-MTSLTPNQARLRNLTYSSPVYVNVTQT 112

Query: 133  VYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKG 186
             Y      +D      E+ +  E   D  + I+IGRIP+M+KS+ CW+K       VE G
Sbjct: 113  TYA----LADPDDPNSEKQLISE---DSYSKILIGRIPMMLKSEYCWLKNQTERGLVEMG 165

Query: 187  DCDFDHGGYFIIKGAEKVFVAQEQI------CLKRLWVSNSMGWTVAYKSENK----RNR 236
            +C FD GGYFII G+EKV +A E++      C ++   +    W    +S+ +     + 
Sbjct: 166  ECVFDQGGYFIINGSEKVLIAMERMANNFVYCFQKKQPAKYT-WICEIRSQAEGMLSTSG 224

Query: 237  LIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
              V+++          G+ V S+ +++ +IP+ ILF ALG  SD+E++  I +   D  +
Sbjct: 225  FSVKMLANLGGRSAARGQIVCSMPYINADIPVVILFRALGCVSDREVIERIVYDFSDTQM 284

Query: 297  LNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSL 351
            + +L  SI +A     +      AL ++ K  +G T    +S      +E +   L P L
Sbjct: 285  MFLLRPSIEEAMPIMSQ----EVALDFIAK--RGPTIGTSKSGRIQYAKELLQKELLPHL 338

Query: 352  HGTKQ-----KARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAH 406
             G KQ     KA F+GYMV  LL    GR   D+RD F  KR+++AG L+          
Sbjct: 339  -GVKQYCEPRKAYFIGYMVHRLLLGQLGRIAEDDRDHFGKKRMDMAGPLMAASFAQLFRK 397

Query: 407  ARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVAN 466
              +   + LQR +   R          AS +T+GL    +TG W          +G+   
Sbjct: 398  LVQDSKRILQRQVDSGRHFDLNSAIRSASSITDGLRYQLATGNWGIDKSGKSVRTGVSQV 457

Query: 467  LGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVT 526
            L R   + T+  LRR    ++ +GK+   R  H +HWG IC   TP+G+  GLVKN+ + 
Sbjct: 458  LNRLTFMSTMSHLRRMNTPLERSGKLAKPRQLHNTHWGMICPAETPEGQAVGLVKNIALM 517

Query: 527  GLVSTSILEPIFEQLFNS-GMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRR 585
              ++   L  +     N  G+E L +     +    KVF++G W+G+  D+      LR 
Sbjct: 518  CTITVGSLPNVVYDFLNEWGLENLDEINPSQIKHMTKVFLNGQWVGMHADATMLCETLRD 577

Query: 586  KRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVV------------ENMGKIKS-- 631
             RR++++  +V I RD   +E+RIF D GR  RPL VV            E++  ++   
Sbjct: 578  LRRKRDIDPEVSIIRDLQANELRIFTDGGRACRPLYVVQPPPSQKLCIKREHVEALRRML 637

Query: 632  LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIK-----FTHCELD 686
            L  ++  +  L++ G++E +  EEEE C  A  +  L      K         +THCE+ 
Sbjct: 638  LNNEHGGWDMLVEEGLVEYIDAEEEETCMVAMFVDDLRNAQRRKSKASSYCHTYTHCEIH 697

Query: 687  MSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPL 746
             S +LG+   IIPF +H+ + R  YQS     QA+G   TN ++R+DT++H L YPQ+PL
Sbjct: 698  PSLILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYATNFNMRIDTMAHVLNYPQKPL 756

Query: 747  FRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFR 806
              T   +            L   EL  G NAIVA+  + GYNQEDSL+MN +S++RG  R
Sbjct: 757  VGTRAME-----------YLRFRELPAGNNAIVAIMTYSGYNQEDSLIMNASSIDRGFMR 805

Query: 807  SEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQS-KIGRVDSLDDDGFPFIGANLQSGDI 865
            S H +SY A+   +  QV         ++ K  + K G    LD+DG    G  +   DI
Sbjct: 806  SVHFKSYMADEKRQGAQVVEEFRAP--SWSKTYAMKRGDYSKLDNDGLINPGTRVHGDDI 863

Query: 866  VIGKYAD--------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQV 911
            +IGK +               +  D S+ LK  + G+V +V+LS N  G  F+ + +R +
Sbjct: 864  LIGKVSPIPNQTDEEGRIQKYTERDCSVALKGADNGVVDQVMLSVNARGHKFTKIRVRTL 923

Query: 912  RSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAAL 971
            R P +GDKF+S HGQKG +G    QE+ PFT  G+VPDI++NPHA PSR T G L+E  L
Sbjct: 924  RVPTIGDKFASRHGQKGTMGISYRQEDMPFTQFGVVPDIIMNPHAVPSRMTIGHLVECLL 983

Query: 972  GKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLI 1031
            GK       G+ SG +  ATPF+  +V  I  +LH  GF + G E +Y+G TG  + + I
Sbjct: 984  GK------VGLLSGEEGDATPFSQVTVHEIMARLHELGFQRQGREVMYNGHTGLRLPAKI 1037

Query: 1032 FIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAA 1091
            FIGPT+YQRL HM EDK+  R  GP+  LTRQP+  R R GG++FGEMERDC+I+HGAA 
Sbjct: 1038 FIGPTYYQRLKHMVEDKIHSRARGPMQMLTRQPMEGRGREGGLRFGEMERDCMISHGAAK 1097

Query: 1092 NLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVP 1149
             L ERLF +SD+Y++H+C  C    +AN+ +             CR C +   I + ++P
Sbjct: 1098 FLKERLFDISDAYRVHVCDNCGMFAIANLYKNHY---------ECRACKN-STISQVHIP 1147

Query: 1150 YGAKLLCQELFSMGITLKF 1168
            Y  KLL QEL +M I  K 
Sbjct: 1148 YACKLLFQELMTMSIMPKL 1166


>gi|397469837|ref|XP_003806546.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Pan paniscus]
          Length = 1226

 Score =  620 bits (1598), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 426/1234 (34%), Positives = 621/1234 (50%), Gaps = 146/1234 (11%)

Query: 2    DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-D 60
            D DD+  T      DL +E     C     S+F+E GLV  Q++S++EFI+  +Q+   D
Sbjct: 63   DEDDDEITP-----DLWQEA----CWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 113

Query: 61   SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
            +    +       S + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+T
Sbjct: 114  APPIDLQAEAQHASGEVEEPPRYL-LKFEQIYLSKPTHWERDGAPS-PMMPNEARLRNLT 171

Query: 121  YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
            YS+ + V +          T    K G EQ      L  +     IG+IP+M++S  C +
Sbjct: 172  YSAPLYVDI----------TKTVIKEGEEQ------LQTQHQKTFIGKIPIMLRSTYCLL 215

Query: 181  KGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR 234
             G+      E  +C  D GGYFII G+EKV +AQE++    ++V        AY  E + 
Sbjct: 216  NGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRS 275

Query: 235  N-------------RLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDK 281
                           ++ R    +K   I G   V ++ ++  E+PI I+F ALG  SD+
Sbjct: 276  CLENSSRPTSTIWVSMLARGGQGAKKSAI-GQRIVATLPYIKQEVPIIIVFRALGFVSDR 334

Query: 282  EIVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKL 327
            +I+  I +  ED  ++ ++  S+ +A      N    F   R A         +KY  ++
Sbjct: 335  DILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEV 394

Query: 328  IKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNK 387
            ++    P    ++ C             +KA FLGYMV  LL A  GRR+ D+RD + NK
Sbjct: 395  LQKEMLPHVGVSDFC-----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNK 443

Query: 388  RLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFST 447
            RL+LAG LL    +    +  K +    Q+ +   +    +E  +   I+++GL  + +T
Sbjct: 444  RLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFN-LELAIKTRIISDGLKYSLAT 502

Query: 448  GAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKIC 507
            G W    K  +  +G+   L R     TL  LRR    +   GK+   R  H + WG +C
Sbjct: 503  GNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVC 562

Query: 508  FLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVD 566
               TP+G   GLVKNL +   +S  S   PI E L    ME L + +  ++    K+FV+
Sbjct: 563  PAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVN 622

Query: 567  GDWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVE- 624
            G W+G+ KD    ++ LR+ RR+ ++  ++V + RD  + E+RI+ DAGRI RPLL+VE 
Sbjct: 623  GCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEK 682

Query: 625  --------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKK 676
                    ++ ++K  E  NY++Q L+  G++E + T EEE    A        D+++K+
Sbjct: 683  QKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAM----TPDDLQEKE 738

Query: 677  PI---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVD 733
                  +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+D
Sbjct: 739  VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMD 797

Query: 734  TLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSL 793
            TL+H L+YPQ+PL  T   +            L   EL  G N+IVA+  + GYNQEDS+
Sbjct: 798  TLAHVLYYPQKPLVTTRSME-----------YLRFRELPAGINSIVAIASYTGYNQEDSV 846

Query: 794  VMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGR------VDS 847
            +MNR++++RG FRS   RSYK        Q  ++  D    F K   +  +       D 
Sbjct: 847  IMNRSAVDRGFFRSVFYRSYKE-------QESKKGFDQEEVFEKPTRETCQGMRHAIYDK 899

Query: 848  LDDDGFPFIGANLQSGDIVIGKYAD---------------SGADHSIKLKHTERGMVQKV 892
            LDDDG    G  +   D++IGK                  +  D S  L+ +E G+V +V
Sbjct: 900  LDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQV 959

Query: 893  VLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVI 952
            +++ N +G  F  + +R VR P +GDKF+S HGQKG  G    QE+ PFT +GI PDI+I
Sbjct: 960  MVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIII 1019

Query: 953  NPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFS 1011
            NPHA PSR T G L+E   GK   +  KG        ATPF    +V  I+  L   G+ 
Sbjct: 1020 NPHAIPSRMTIGHLIECLQGK--VSANKGEIGD----ATPFNDAVNVQKISNLLSDYGYH 1073

Query: 1012 KWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRF 1071
              G E LY+G TG  + S IFIGPT+YQRL HM +DK+  R  GP+  L RQP+  R R 
Sbjct: 1074 LRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRD 1133

Query: 1072 GGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRG 1131
            GG++FGEMERDC IAHGAA  L ERLF  SD YQ+H+C  C  +A           +   
Sbjct: 1134 GGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAI-------ANTRTHT 1186

Query: 1132 PYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
              CR C +   I    +PY  KLL QEL SM I 
Sbjct: 1187 YECRGCRNKTQISLVRMPYACKLLFQELMSMSIA 1220


>gi|403182531|gb|EJY57456.1| AAEL017213-PA [Aedes aegypti]
          Length = 1176

 Score =  619 bits (1597), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 416/1220 (34%), Positives = 622/1220 (50%), Gaps = 130/1220 (10%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPS 74
            ++  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S
Sbjct: 17   EISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELTAEAQHTS 76

Query: 75   KKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVY 134
               E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +     
Sbjct: 77   GDIETPTRYV-LKFDQIYLSKPTHWEKDGSPS-PMMPNEARLRNLTYSAPLYVDI----- 129

Query: 135  TQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDC 188
                 T  K   G++       +  +     IG+IP+M++S  C +  +      E  +C
Sbjct: 130  -----TKTKIVEGQDP------VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNEC 178

Query: 189  DFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVRL 241
              D GGYFII G+EKV +AQE++    ++V +      AYKSE       + R    +  
Sbjct: 179  PLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKSEIRSCLEHSSRPTSTLWC 238

Query: 242  VDMSKF-EDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
              M++  + IK    G++V+++  ++  EIPI I+F ALG  +D++I+  I +  +D  +
Sbjct: 239  NMMARGGQSIKKSAIGQRVIAILPYVKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 298

Query: 297  LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
            + ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C
Sbjct: 299  MEMVKPSLDEAFVVQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFC 358

Query: 343  MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                         +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG L+    + 
Sbjct: 359  -----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLMALLFRG 407

Query: 403  HIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISG 462
                  K +    Q+ +   +    +E  +   I+T+GL  + +TG W    K  +  +G
Sbjct: 408  LFKSLVKEVRMYAQKFIDRGKDFN-LELAIKTKIITDGLRYSLATGNWGDQKKAHQARAG 466

Query: 463  IVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKN 522
            +   L R     TL  LRR    +   GK+   R  H + WG IC   TP+G   GLVKN
Sbjct: 467  VSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKN 526

Query: 523  LGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVS 581
            L +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D     +
Sbjct: 527  LALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLTA 586

Query: 582  ELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKS 631
             LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VEN         +  +K 
Sbjct: 587  TLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLRKNHVDMLKD 646

Query: 632  LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLL 691
             +  NY +Q L+  G++E + T EEE    A     L +D E      +THCE+  + +L
Sbjct: 647  RDYNNYGWQVLVASGVVEYIDTLEEETVMIAMTPYDLKQDKEYAYCTTYTHCEIHPAMIL 706

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T  
Sbjct: 707  GVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRS 765

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
             +            L   EL  G N IVA+  + GYNQEDS+++N +++ERG FRS   R
Sbjct: 766  ME-----------YLRFRELPAGINTIVAILCYTGYNQEDSVILNASAVERGFFRSVFYR 814

Query: 812  SYK----AEVDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGD 864
            SYK     ++ ++E Q +   R++   M N           D LDDDG    G  +   D
Sbjct: 815  SYKDSESKKIGDQEEQFEKPNRQTCQGMRN--------ALYDKLDDDGIIAPGLRVSGDD 866

Query: 865  IVIGKY-----ADSGADHSIK----------LKHTERGMVQKVVLSSNDDGKNFSVVSLR 909
            +VIGK       D   D + K          L+++E G+V +V+L+ N +G  F  + +R
Sbjct: 867  VVIGKTITLPETDDDLDGTTKRYTKRDGSTFLRNSETGIVDQVMLTLNSEGYKFCKIRVR 926

Query: 910  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEA 969
             VR P +GDKF+S HGQKG  G    QE+ PFT +G+ PDI+INPHA PSR T G L+E 
Sbjct: 927  SVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIEC 986

Query: 970  ALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVR 1028
              GK    LG     G    ATPF    +V  I+  L   G+   G E +Y+G TG  + 
Sbjct: 987  IQGK----LGSN--KGEIGDATPFNDAVNVQKISTFLQEYGYQLRGNEVMYNGHTGRKIN 1040

Query: 1029 SLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG 1088
            + +F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC I+HG
Sbjct: 1041 AQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHG 1100

Query: 1089 AAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANV 1148
            AA  L ERLF +SD Y++H+C  C  +A    R            C+ C +   I +  +
Sbjct: 1101 AAQFLRERLFEVSDPYRIHVCNFCGLIAIANMR-------NNTFECKGCKNKTQISQVKL 1153

Query: 1149 PYGAKLLCQELFSMGITLKF 1168
            PY AKLL QEL +M I  + 
Sbjct: 1154 PYAAKLLFQELMAMNIAPRL 1173


>gi|413915216|gb|AFW21470.1| RNA polymerase II beta subunit [Neotyphodium aotearoae]
          Length = 1261

 Score =  619 bits (1597), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 425/1268 (33%), Positives = 651/1268 (51%), Gaps = 162/1268 (12%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKG-EGEWRYA 84
            C     SFF   GLVS Q +S++EF +  +Q   + +    ++    PS  G +   R  
Sbjct: 25   CWTVISSFFETKGLVSQQTDSFDEFTQTTIQDLVNEYSTITLDQPNPPSPPGMKIALRRY 84

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT--QKRV--- 139
             ++FG V + +P+  +   G    + P   R +N+TY+S + + +  +V    ++ V   
Sbjct: 85   EIKFGTVMVSRPTI-SETDGTVTSLLPYECRDRNLTYASPLYINITKKVSAAIEREVPLH 143

Query: 140  ------TSDKFKTGREQ----YIQKEVLSDETTN--------IIIGRIPVMVKSDLCWMK 181
                   ++  KTG       + Q+E   D+           + +G++P+MVKS +C + 
Sbjct: 144  EMDDAQQAEYAKTGENPTKLIWEQEESPEDDEAGKSEDWKNMVFVGKLPIMVKSKICHLS 203

Query: 182  GVEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKS 230
                       +C +D GGYF+I G+EKV +AQE+     + V      +   +T   +S
Sbjct: 204  RETDESLFMVNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSPFTYTAEIRS 263

Query: 231  E-NKRNRLI--VRLVDMSKFEDIKGG---EKVLSVYFLSTEIPIWILFFALGVSSDKEIV 284
               K +RLI  ++L    K +  +GG       ++ F+ +++PI I+F ALGV SD++I+
Sbjct: 264  ALEKGSRLISSLQLKLYGKGDSARGGFGQTIHTTLPFVKSDLPIAIVFRALGVVSDEDIL 323

Query: 285  NLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTE---- 340
            N I +  +D  +L +L   I +A   C + R+   AL ++ K  +G     G   E    
Sbjct: 324  NHICYDRKDSQMLEMLRPCIEEA--FCVQDRE--VALDFIGK--RGNRDQAGLGREKRVR 377

Query: 341  ---ECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAG 393
               + +     P +  T+    +KA FLGYMV  LLQ   GRR+ D+RD F  KRL+LAG
Sbjct: 378  VAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLDLAG 437

Query: 394  ELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHP 453
             LL +  +  +      ++  L+R + G+R    +   +  + L+NGL  + +TG W   
Sbjct: 438  PLLAKLFRGIVRRMNNELSNYLRRCVEGNRHFN-LAVGIKPATLSNGLKYSLATGNWGDQ 496

Query: 454  FKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPD 513
             K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+
Sbjct: 497  KKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPE 556

Query: 514  GENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGV 572
            G+ CGLVKNL +   VS  S  EP+ E + N GME + +          K+FV+G W+GV
Sbjct: 557  GQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVEEYEPLRYPHATKIFVNGTWVGV 616

Query: 573  CKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------- 625
             +D    VS++   RR+  L  +V + R+    E +IF DAGR++RP+  V+        
Sbjct: 617  HQDPKHLVSQVLDTRRKSYLQYEVSLVREIRDQEFKIFSDAGRVMRPVFTVQQEDDPETG 676

Query: 626  ---------------MGKIKSLEGKNYT----FQALLDHGIIELVGTEEEED---CCTAW 663
                           + K ++   ++ +    ++ L+  G +E +  EEEE    C T  
Sbjct: 677  IEKGHLVLSKELVNKLAKEQAEPSEDPSEKIGWEGLIRAGAVEYLDAEEEETSMICMTPE 736

Query: 664  GIK-YLLK--------DIED---------KKPIK--FTHCELDMSFLLGLSCGIIPFANH 703
             ++ Y L+        DI D           P    +THCE+  S +LG+   IIPF +H
Sbjct: 737  DLELYRLQKAGVALDDDIGDDLNRRLKTRTNPTTHMYTHCEIHPSMILGICASIIPFPDH 796

Query: 704  DHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHN 763
            + + R  YQS     QA+GF  TN S R+DT+++ L+YPQ+PL  T   +          
Sbjct: 797  NQSPRNTYQS-AMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSME---------- 845

Query: 764  HILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQ 823
              L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   RSY     ++E +
Sbjct: 846  -FLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYS----DQEKK 900

Query: 824  VKRRSSD---DMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA-------DS 873
            V    ++      +   ++ K G  D LD+DG    G  +   DI+IGK A       D 
Sbjct: 901  VGLNYTEVFEKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDQENQDL 960

Query: 874  GA--------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHG 925
            G         D S  L+ TE G++  V+L+ N D   +  V +R  + P +GDKF+S HG
Sbjct: 961  GTRTTVHQRRDISTPLRSTENGIIDSVILTVNADNVKYVKVRVRTTKVPQIGDKFASRHG 1020

Query: 926  QKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSG 985
            QKG +G    QE+ PFT +G+ PDI+INPHA PSR T   L+E  L K ++ L      G
Sbjct: 1021 QKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSK-VSTL-----EG 1074

Query: 986  LKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMS 1045
            ++  ATPF   +VD+++E L + G+   G E +Y+G TG+ +R+ +F GPT+YQRL HM 
Sbjct: 1075 MEGDATPFTDVTVDSVSELLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLRHMV 1134

Query: 1046 EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQ 1105
            +DK+  R  GPV  +TRQPV  R R GG++FGEMERDC+IAHGAAA L ERLF +SD+++
Sbjct: 1135 DDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAFR 1194

Query: 1106 MHICRKC---KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSM 1162
            +H+C  C     +AN+ ++            CR C +   I + ++PY AKLL QEL SM
Sbjct: 1195 VHVCEICGLMTPIANLSKQSFE---------CRPCKNKTKIAQIHIPYAAKLLFQELQSM 1245

Query: 1163 GITLKFDT 1170
             I  +  T
Sbjct: 1246 NIAARMFT 1253


>gi|23512288|gb|AAH38472.1| Polymerase (RNA) II (DNA directed) polypeptide B [Mus musculus]
          Length = 1167

 Score =  619 bits (1597), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 428/1241 (34%), Positives = 624/1241 (50%), Gaps = 160/1241 (12%)

Query: 2    DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-D 60
            D DD+  T      DL +E     C     S+F+E GLV  Q++S++EFI+  +Q+   D
Sbjct: 4    DEDDDEITP-----DLWQEA----CWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 54

Query: 61   SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
            +    +       S + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+T
Sbjct: 55   APPIDLQAEAQHASGEVEEPPRYL-LKFEQIYLSKPTHWERDGAPS-PMMPNEARLRNLT 112

Query: 121  YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
            YS+ + V +          T    K G EQ      L  +     IG+IP+M++S  C +
Sbjct: 113  YSAPLYVDI----------TKTVIKEGEEQ------LQTQHQKTFIGKIPIMLRSTYCLL 156

Query: 181  KGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR 234
             G+      E  +C  D GGYFII G+EKV +AQE++    ++V        AY  E + 
Sbjct: 157  NGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRS 216

Query: 235  N-------------RLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDK 281
                           ++ R    +K   I G   V ++ ++  E+PI I+F ALG  SD+
Sbjct: 217  CLENSSRPTSTIWVSMLARGGQGAKKSAI-GQRIVATLPYIKQEVPIIIVFRALGFVSDR 275

Query: 282  EIVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKL 327
            +I+  I +  ED  ++ ++  S+ +A      N    F   R A         +KY  ++
Sbjct: 276  DILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEV 335

Query: 328  IKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNK 387
            ++    P    ++ C             +KA FLGYMV  LL A  GRR+ D+RD + NK
Sbjct: 336  LQKEMLPHVGVSDFC-----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNK 384

Query: 388  RLELAGELLERELKVHIAHARKRMAKALQRD--LYGDRTVR-----PIEYYLDASILTNG 440
            RL+LAG LL        A   + M K L ++  +Y  + +       +E  +   I+++G
Sbjct: 385  RLDLAGPLL--------AFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDG 436

Query: 441  LSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHP 500
            L  + +TG W    K  +  +G+   L R     TL  LRR    +   GK+   R  H 
Sbjct: 437  LKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHN 496

Query: 501  SHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGG 559
            + WG +C   TP+G   GLVKNL +   +S  S   PI E L    ME L + +  ++  
Sbjct: 497  TLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIAD 556

Query: 560  KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILR 618
              K+FV+G W+G+ KD    ++ LR+ RR+ ++  ++V + RD  + E+RI+ DAGRI R
Sbjct: 557  ATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICR 616

Query: 619  PLLVVE---------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLL 669
            PLL+VE         ++ ++K  E  NY++Q L+  G++E + T EEE    A       
Sbjct: 617  PLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD--- 673

Query: 670  KDIEDKKPI---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTT 726
             D+++K+      +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   T
Sbjct: 674  -DLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYIT 731

Query: 727  NPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLG 786
            N  +R+DTL+H L+YPQ+PL  T   +            L   EL  G N+IVA+  + G
Sbjct: 732  NFHVRMDTLAHVLYYPQKPLVTTRSME-----------YLRFRELPAGINSIVAIASYTG 780

Query: 787  YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGR-- 844
            YNQEDS++MNR++++RG FRS   RSYK        Q  ++  D    F K   +  +  
Sbjct: 781  YNQEDSVIMNRSAVDRGFFRSVFYRSYKE-------QESKKGFDQEEVFEKPTRETCQGM 833

Query: 845  ----VDSLDDDGFPFIGANLQSGDIVIGKYAD---------------SGADHSIKLKHTE 885
                 + LDDDG    G  +   D++IGK                  +  D S  L+ +E
Sbjct: 834  RHAIYEKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE 893

Query: 886  RGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQG 945
             G+V +V+++ N +G  F  + +R VR P +GDKF+S HGQKG  G    QE+ PFT +G
Sbjct: 894  TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG 953

Query: 946  IVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQ 1004
            I PDI+INPHA PSR T G L+E   GK   +  KG        ATPF    +V  I+  
Sbjct: 954  ITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGEIGD----ATPFNDAVNVQKISNL 1007

Query: 1005 LHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQP 1064
            L   G+   G E LY+G TG  + S IFIGPT+YQRL HM +DK+  R  GP+  L RQP
Sbjct: 1008 LSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQP 1067

Query: 1065 VADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVG 1124
            +  R R GG++FGEMERDC IAHGAA  L ERLF  SD YQ+H+C  C  +A        
Sbjct: 1068 MEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAI------- 1120

Query: 1125 GGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
               +     CR C +   I    +PY  KLL QEL SM I 
Sbjct: 1121 ANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIA 1161


>gi|126331583|ref|XP_001362455.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Monodelphis
            domestica]
 gi|395542735|ref|XP_003773281.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Sarcophilus
            harrisii]
          Length = 1174

 Score =  619 bits (1597), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 425/1234 (34%), Positives = 620/1234 (50%), Gaps = 146/1234 (11%)

Query: 2    DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-D 60
            D DD+  T      DL +E     C     S+F+E GLV  Q++S++EFI+  +Q+   D
Sbjct: 11   DEDDDEITP-----DLWQEA----CWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 61   SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
            +    +       + + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+T
Sbjct: 62   APPIDLQAEAQHATGEVEEPPRYL-LKFEQIYLSKPTHWERDGAPS-PMMPNEARLRNLT 119

Query: 121  YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
            YS+ + V +          T    K G EQ      L  +     IG+IP+M++S  C +
Sbjct: 120  YSAPLYVDI----------TKTVIKEGEEQ------LQTQHQKTFIGKIPIMLRSTYCLL 163

Query: 181  KGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR 234
             G+      E  +C  D GGYFII G+EKV +AQE++    ++V        AY  E + 
Sbjct: 164  NGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRS 223

Query: 235  N-------------RLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDK 281
                           ++ R    +K   I G   V ++ ++  E+PI I+F ALG  SD+
Sbjct: 224  CLENSSRPTSTIWVSMLARGGQGAKKSAI-GQRIVATLPYIKQEVPIIIVFRALGFVSDR 282

Query: 282  EIVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKL 327
            +I+  I +  ED  ++ ++  S+ +A      N    F   R A         +KY  ++
Sbjct: 283  DILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEV 342

Query: 328  IKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNK 387
            ++    P    ++ C             +KA FLGYMV  LL A  GRR+ D+RD + NK
Sbjct: 343  LQKEMLPHVGVSDFC-----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNK 391

Query: 388  RLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFST 447
            RL+LAG LL    +    +  K +    Q+ +   +    +E  +   I+++GL  + +T
Sbjct: 392  RLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFN-LELAIKTRIISDGLKYSLAT 450

Query: 448  GAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKIC 507
            G W    K  +  +G+   L R     TL  LRR    +   GK+   R  H + WG +C
Sbjct: 451  GNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVC 510

Query: 508  FLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVD 566
               TP+G   GLVKNL +   +S  S   PI E L    ME L + +  ++    K+FV+
Sbjct: 511  PAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVN 570

Query: 567  GDWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVE- 624
            G W+G+ KD    ++ LR+ RR+ ++  ++V + RD  + E+RI+ DAGRI RPLL+VE 
Sbjct: 571  GCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEK 630

Query: 625  --------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKK 676
                    ++ ++K  E  NY++Q L+  G++E + T EEE    A        D+++K 
Sbjct: 631  QKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAM----TPDDLQEKG 686

Query: 677  PI---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVD 733
                  +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+D
Sbjct: 687  VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMD 745

Query: 734  TLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSL 793
            TL+H L+YPQ+PL  T   +            L   EL  G N+IVA+  + GYNQEDS+
Sbjct: 746  TLAHVLYYPQKPLVTTRSME-----------YLRFRELPAGINSIVAIASYTGYNQEDSV 794

Query: 794  VMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGR------VDS 847
            +MNR++++RG FRS   RSYK        Q  ++  D    F K   +  +       D 
Sbjct: 795  IMNRSAVDRGFFRSVFYRSYKE-------QESKKGFDQEEVFEKPTRETCQGMRHAIYDK 847

Query: 848  LDDDGFPFIGANLQSGDIVIGKYAD---------------SGADHSIKLKHTERGMVQKV 892
            LDDDG    G  +   D++IGK                  +  D S  L+ +E G+V +V
Sbjct: 848  LDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQV 907

Query: 893  VLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVI 952
            +++ N +G  F  + +R VR P +GDKF+S HGQKG  G    QE+ PFT +GI PDI+I
Sbjct: 908  MVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIII 967

Query: 953  NPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFS 1011
            NPHA PSR T G L+E   GK   +  KG        ATPF    +V  I+  L   G+ 
Sbjct: 968  NPHAIPSRMTIGHLIECLQGK--VSANKGEIGD----ATPFNDAVNVQKISNLLSDYGYH 1021

Query: 1012 KWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRF 1071
              G E LY+G TG  + S IFIGPT+YQRL HM +DK+  R  GP+  L RQP+  R R 
Sbjct: 1022 LRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRD 1081

Query: 1072 GGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRG 1131
            GG++FGEMERDC IAHGAA  L ERLF  SD YQ+H+C  C  +A           +   
Sbjct: 1082 GGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAI-------ANTRTHT 1134

Query: 1132 PYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
              CR C +   I    +PY  KLL QEL SM I 
Sbjct: 1135 YECRGCRNKTQISLVRMPYACKLLFQELMSMSIA 1168


>gi|91090964|ref|XP_974653.1| PREDICTED: similar to AGAP003648-PA [Tribolium castaneum]
 gi|270013197|gb|EFA09645.1| hypothetical protein TcasGA2_TC011771 [Tribolium castaneum]
          Length = 1175

 Score =  619 bits (1597), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 417/1217 (34%), Positives = 626/1217 (51%), Gaps = 144/1217 (11%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPSKKGEGEWRYA 84
            C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S + E   RY 
Sbjct: 26   CWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGELENPSRYL 85

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKF 144
             ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +          T    
Sbjct: 86   -LKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLTYSAPLYVDI----------TKTIV 133

Query: 145  KTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFII 198
            K G      ++ +  +     IG+IP+M++S  C + G+      E  +C  D GGYFII
Sbjct: 134  KDG------EDPIETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFII 187

Query: 199  KGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVRLVDMSK----F 247
             G+EKV +AQE++    ++V +      A+KSE       + R    + +  M++     
Sbjct: 188  NGSEKVLIAQEKMATNTVYVFSMKDGKYAFKSEIRSCLEHSSRPTSTLWVNMMARGGQAI 247

Query: 248  EDIKGGEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHD 306
            +    G++++++  ++  EIPI I+F ALG  +D++I+  I +  ED  ++ ++  S+ +
Sbjct: 248  KKAAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFEDPEMMEMVKPSLDE 307

Query: 307  A-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEECMNTYLFPSLH 352
            A      N    F   R A         +KY  ++++    P    ++ C          
Sbjct: 308  AFVIQEQNIALNFIGTRGARPGVTKEKRIKYAREILQKEMLPHVGVSDFC---------- 357

Query: 353  GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMA 412
               +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL        A   + + 
Sbjct: 358  -ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLL--------AFLFRGLF 408

Query: 413  KALQRD--LYGDRTV-RPIEYYLDASI----LTNGLSRAFSTGAWSHPFKRTERISGIVA 465
            K L ++  +Y  + + R  ++ LD +I    +T+GL  + +TG W    K  +  +G+  
Sbjct: 409  KNLMKEVRMYAQKFIDRGKDFNLDLAIKTKLITDGLRYSLATGNWGDQKKAHQARAGVSQ 468

Query: 466  NLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV 525
             L R     TL  LRR    +   GK+   R  H + WG IC   TP+G   GLVKNL +
Sbjct: 469  VLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLAL 528

Query: 526  TGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELR 584
               +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    ++ LR
Sbjct: 529  MAYISVGSQPSPILEFLEEWSMENLEEIAPSAIANATKIFVNGCWVGIHRDPEQLMATLR 588

Query: 585  RKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKSLEG 634
            + RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VEN         +  +K  E 
Sbjct: 589  KLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGTLLLKKRHIDMLKEREY 648

Query: 635  KNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLS 694
             NY +Q L+  G++E + T EEE    A     L ++ E      +THCE+  + +LG+ 
Sbjct: 649  NNYGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQEKEYAYCTTYTHCEIHPAMILGVC 708

Query: 695  CGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDC 754
              IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T   + 
Sbjct: 709  ASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSME- 766

Query: 755  LGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYK 814
                       L   EL  G N+IVA+  + GYNQEDS+++N +++ERG FRS   RSYK
Sbjct: 767  ----------YLRFRELPAGINSIVAIACYTGYNQEDSVILNASAVERGFFRSVFYRSYK 816

Query: 815  ----AEVDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVI 867
                  + ++E Q +   R++   M N           D LDDDG    G  +   D+VI
Sbjct: 817  DAESKRIGDQEEQFEKPTRQTCQGMRN--------ALYDKLDDDGIIAPGIRVSGDDVVI 868

Query: 868  GKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVR 912
            GK                  +  D S  L+++E G+V +V+L+ N +G  F  + +R VR
Sbjct: 869  GKTMTLPENDDELDGTTKRFTKRDASTFLRNSETGVVDQVMLTLNSEGYKFCKIRVRSVR 928

Query: 913  SPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALG 972
             P +GDKF+S HGQKG  G    QE+  FT +G+ PDI+INPHA PSR T G L+E   G
Sbjct: 929  IPQIGDKFASRHGQKGTCGIQYRQEDMIFTCEGLTPDIIINPHAIPSRMTIGHLIECIQG 988

Query: 973  KGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLI 1031
            K   +  KG        ATPF    +V  I+  L   G+   G E +Y+G TG  + + I
Sbjct: 989  K--VSANKGEIGD----ATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQI 1042

Query: 1032 FIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAA 1091
            F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC I+HGAA 
Sbjct: 1043 FLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQ 1102

Query: 1092 NLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYG 1151
             L ERLF +SD Y++H+C  C  +A      +   R      C+ C +   I +  +PY 
Sbjct: 1103 FLRERLFEVSDQYRIHVCNFCGLIA------IANMRN-NTFECKGCKNKTQISQVRLPYA 1155

Query: 1152 AKLLCQELFSMGITLKF 1168
            AKLL QEL SM I  + 
Sbjct: 1156 AKLLFQELMSMNIAPRL 1172


>gi|226958589|ref|NP_722493.2| DNA-directed RNA polymerase II subunit RPB2 [Mus musculus]
 gi|51702009|sp|Q8CFI7.2|RPB2_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB2; AltName:
            Full=DNA-directed RNA polymerase II 140 kDa polypeptide;
            AltName: Full=DNA-directed RNA polymerase II subunit B;
            AltName: Full=RNA polymerase II subunit 2; AltName:
            Full=RNA polymerase II subunit B2
 gi|148705989|gb|EDL37936.1| polymerase (RNA) II (DNA directed) polypeptide B [Mus musculus]
          Length = 1174

 Score =  619 bits (1596), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 428/1241 (34%), Positives = 624/1241 (50%), Gaps = 160/1241 (12%)

Query: 2    DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-D 60
            D DD+  T      DL +E     C     S+F+E GLV  Q++S++EFI+  +Q+   D
Sbjct: 11   DEDDDEITP-----DLWQEA----CWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 61   SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
            +    +       S + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+T
Sbjct: 62   APPIDLQAEAQHASGEVEEPPRYL-LKFEQIYLSKPTHWERDGAPS-PMMPNEARLRNLT 119

Query: 121  YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
            YS+ + V +          T    K G EQ      L  +     IG+IP+M++S  C +
Sbjct: 120  YSAPLYVDI----------TKTVIKEGEEQ------LQTQHQKTFIGKIPIMLRSTYCLL 163

Query: 181  KGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR 234
             G+      E  +C  D GGYFII G+EKV +AQE++    ++V        AY  E + 
Sbjct: 164  NGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRS 223

Query: 235  N-------------RLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDK 281
                           ++ R    +K   I G   V ++ ++  E+PI I+F ALG  SD+
Sbjct: 224  CLENSSRPTSTIWVSMLARGGQGAKKSAI-GQRIVATLPYIKQEVPIIIVFRALGFVSDR 282

Query: 282  EIVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKL 327
            +I+  I +  ED  ++ ++  S+ +A      N    F   R A         +KY  ++
Sbjct: 283  DILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEV 342

Query: 328  IKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNK 387
            ++    P    ++ C             +KA FLGYMV  LL A  GRR+ D+RD + NK
Sbjct: 343  LQKEMLPHVGVSDFC-----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNK 391

Query: 388  RLELAGELLERELKVHIAHARKRMAKALQRD--LYGDRTVR-----PIEYYLDASILTNG 440
            RL+LAG LL        A   + M K L ++  +Y  + +       +E  +   I+++G
Sbjct: 392  RLDLAGPLL--------AFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDG 443

Query: 441  LSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHP 500
            L  + +TG W    K  +  +G+   L R     TL  LRR    +   GK+   R  H 
Sbjct: 444  LKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHN 503

Query: 501  SHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGG 559
            + WG +C   TP+G   GLVKNL +   +S  S   PI E L    ME L + +  ++  
Sbjct: 504  TLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIAD 563

Query: 560  KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILR 618
              K+FV+G W+G+ KD    ++ LR+ RR+ ++  ++V + RD  + E+RI+ DAGRI R
Sbjct: 564  ATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICR 623

Query: 619  PLLVVE---------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLL 669
            PLL+VE         ++ ++K  E  NY++Q L+  G++E + T EEE    A       
Sbjct: 624  PLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD--- 680

Query: 670  KDIEDKKPI---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTT 726
             D+++K+      +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   T
Sbjct: 681  -DLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYIT 738

Query: 727  NPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLG 786
            N  +R+DTL+H L+YPQ+PL  T   +            L   EL  G N+IVA+  + G
Sbjct: 739  NFHVRMDTLAHVLYYPQKPLVTTRSME-----------YLRFRELPAGINSIVAIASYTG 787

Query: 787  YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGR-- 844
            YNQEDS++MNR++++RG FRS   RSYK        Q  ++  D    F K   +  +  
Sbjct: 788  YNQEDSVIMNRSAVDRGFFRSVFYRSYKE-------QESKKGFDQEEVFEKPTRETCQGM 840

Query: 845  ----VDSLDDDGFPFIGANLQSGDIVIGKYAD---------------SGADHSIKLKHTE 885
                 + LDDDG    G  +   D++IGK                  +  D S  L+ +E
Sbjct: 841  RHAIYEKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE 900

Query: 886  RGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQG 945
             G+V +V+++ N +G  F  + +R VR P +GDKF+S HGQKG  G    QE+ PFT +G
Sbjct: 901  TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG 960

Query: 946  IVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQ 1004
            I PDI+INPHA PSR T G L+E   GK   +  KG        ATPF    +V  I+  
Sbjct: 961  ITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGEIGD----ATPFNDAVNVQKISNL 1014

Query: 1005 LHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQP 1064
            L   G+   G E LY+G TG  + S IFIGPT+YQRL HM +DK+  R  GP+  L RQP
Sbjct: 1015 LSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQP 1074

Query: 1065 VADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVG 1124
            +  R R GG++FGEMERDC IAHGAA  L ERLF  SD YQ+H+C  C  +A        
Sbjct: 1075 MEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAI------- 1127

Query: 1125 GGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
               +     CR C +   I    +PY  KLL QEL SM I 
Sbjct: 1128 ANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIA 1168


>gi|324120624|dbj|BAJ78703.1| RNA polymerase II second largest subunit [Nomadacris japonica]
          Length = 1173

 Score =  619 bits (1596), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 419/1221 (34%), Positives = 627/1221 (51%), Gaps = 134/1221 (10%)

Query: 17   LGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPSK 75
            +  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S 
Sbjct: 15   ISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIELQAEAQHTSG 74

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT 135
            + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +      
Sbjct: 75   EIENPPRYL-LKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLTYSAPLYVDIL----- 127

Query: 136  QKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCD 189
             KRV   K     E+ +  E L  +T    IG+IP+M++S  C +  +      E  +C 
Sbjct: 128  -KRVEKHK-----EEPV--ETLHQKT---FIGKIPIMLRSTYCLLSTLTDRDLTELNECP 176

Query: 190  FDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVRLV 242
             D GGYFII G+EKV +AQE++    ++V +      AYK+E       + R    + + 
Sbjct: 177  LDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKAEIRSCLEHSSRPTSTLWVN 236

Query: 243  DMSKF-EDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSIL 297
             M++  + IK    G++++++  ++  EIPI I F ALG  +D++I+  I +  +D  ++
Sbjct: 237  MMARGGQSIKKSAIGQRIVAILPYIKQEIPIIIAFRALGFVADRDILEHIIYDFDDPEMM 296

Query: 298  NILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEECM 343
             ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C 
Sbjct: 297  EMVKPSLDEAFVVQEQNVALNFIGTRGARPGVTKERRIKYAREILQKEMLPHVGVSDFC- 355

Query: 344  NTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVH 403
                        +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL    +  
Sbjct: 356  ----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGL 405

Query: 404  IAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGI 463
              +  K +    Q+ +   +    +E  +   I+T+GL  + +TG W    K  +  +G+
Sbjct: 406  FKNLMKEVRMYAQKFIDRGKDFN-LELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV 464

Query: 464  VANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNL 523
               L R     TL  LRR    +   GK+   R  H + WG IC   TP+G   GLVKNL
Sbjct: 465  SQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL 524

Query: 524  GVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSE 582
             +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    ++ 
Sbjct: 525  ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMAT 584

Query: 583  LRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKSL 632
            LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VEN         + ++K  
Sbjct: 585  LRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKRHIDRLKER 644

Query: 633  EGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLG 692
            +  NY +Q L+  G++E + T EEE    A  +  L  D         THCE+  + +LG
Sbjct: 645  DYDNYGWQMLVAEGVVEYIDTLEEETVMIAMSLDDLRHDKSYAYCSTHTHCEIHPAMILG 704

Query: 693  LSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMIS 752
            +   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T   
Sbjct: 705  VCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSM 763

Query: 753  DCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRS 812
            +            L   EL  G N++VA+  + GYNQEDS++MN +++ERG FRS   RS
Sbjct: 764  E-----------YLRFRELPAGINSVVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRS 812

Query: 813  YK----AEVDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDI 865
            YK      + ++E Q +   R++   M N           D LDDDG    G  +   D+
Sbjct: 813  YKDAESKRIGDQEEQFEKPTRQTCQGMRN--------ALYDKLDDDGIISPGIRVSGDDV 864

Query: 866  VIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQ 910
            VIGK                  +  D S  L+++E G+V +V+L+ N +G  F  + +R 
Sbjct: 865  VIGKTITLPDNEDELEGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS 924

Query: 911  VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA 970
            VR P +GDKF+S HGQKG  G    QE+ PFT +GI PDI+INPHA PSR T G L+E  
Sbjct: 925  VRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECL 984

Query: 971  LGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRS 1029
             GK   +  KG        ATPF    +V  I+  L   G+   G E +Y+G TG  + +
Sbjct: 985  QGK--VSSNKGEIGD----ATPFNDAVNVQKISSLLQEYGYQLRGNEVMYNGHTGRKINA 1038

Query: 1030 LIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA 1089
             +F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC IAHGA
Sbjct: 1039 QVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGA 1098

Query: 1090 AANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKAN 1147
            A  L ERLF +SD Y++H+C  C    +AN+               C+ C +   I +  
Sbjct: 1099 AQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---------CKGCKNKTQISQVR 1149

Query: 1148 VPYGAKLLCQELFSMGITLKF 1168
            +PY AKLL QEL +M I  + 
Sbjct: 1150 LPYAAKLLFQELMAMNIAPRL 1170


>gi|324120642|dbj|BAJ78712.1| RNA polymerase II second largest subunit [Reticulitermes speratus]
          Length = 1150

 Score =  619 bits (1596), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 414/1212 (34%), Positives = 622/1212 (51%), Gaps = 134/1212 (11%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPSKKGEGEWRYA 84
            C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S + E   RY 
Sbjct: 1    CWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSGEIENPPRYL 60

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKF 144
             ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +          T    
Sbjct: 61   -LKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLTYSAPLYVDI----------TKTIV 108

Query: 145  KTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFII 198
            K G      ++ +  +     IG+IP+M++S  C + G+      E  +C  D GGYFII
Sbjct: 109  KDG------EDPIETQHQKTFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFII 162

Query: 199  KGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVRLVDMSKF-EDI 250
             G+EKV +AQE++    ++V +      A+K+E       + R    + +  M++  + I
Sbjct: 163  NGSEKVLIAQEKMATNTVYVFSMKDGKFAFKAEIRSCLEHSSRPTSTLWVNMMARGGQSI 222

Query: 251  KG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHD 306
            K    G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  ++ ++  S+ +
Sbjct: 223  KKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDE 282

Query: 307  A-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEECMNTYLFPSLH 352
            A      N    F   R A         +KY  ++++    P    ++ C          
Sbjct: 283  AFVIQEQNVALNFIGARGARPGVTKDKRIKYAREILQKEMLPHVGVSDFC---------- 332

Query: 353  GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMA 412
               +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL    +    +  K + 
Sbjct: 333  -ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVR 391

Query: 413  KALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANP 472
               Q+ +   +    +E  +   I+T+GL  + +TG W    K  +  +G+   L R   
Sbjct: 392  IYAQKFIDRGKDFN-LELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTF 450

Query: 473  LQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST- 531
              TL  LRR    +   GK+   R  H + WG IC   TP+G   GLVKNL +   +S  
Sbjct: 451  ASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVG 510

Query: 532  SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKE 591
            S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    ++ LR+ RR+ +
Sbjct: 511  SQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMD 570

Query: 592  L-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVE---------NMGKIKSLEGKNYTFQA 641
            +  ++V + RD    E+RI+ DAGRI RPLL+VE         ++  +K  E  NY +Q 
Sbjct: 571  IIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVEGGNLLLKKRHIDMLKEREYNNYGWQV 630

Query: 642  LLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFA 701
            L+  G++E + T EEE    A     L +D E      +THCE+  + +LG+   IIPF 
Sbjct: 631  LVASGVVEYIDTLEEETVMIAMSPDDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFP 690

Query: 702  NHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYG 761
            +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T   +        
Sbjct: 691  DHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSME-------- 741

Query: 762  HNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYK----AEV 817
                L   EL  G N+IVA+  + GYNQEDS++MN +++ERG FRS   R+YK      +
Sbjct: 742  ---YLRFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRAYKDAESKRI 798

Query: 818  DNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD-- 872
             ++E Q +   R +   M N           D LDDDG    G  +   D+VIGK     
Sbjct: 799  GDQEEQFEKPTRTTCQGMRN--------ALYDKLDDDGIISPGIRVSGDDVVIGKTITLP 850

Query: 873  -------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDK 919
                         +  D S  L+++E G+V +V+L+ N +G  F  + +R VR P +GDK
Sbjct: 851  DTEDELEGTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDK 910

Query: 920  FSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALG 979
            F+S HGQKG  G    QE+ PFT +G+ PDI+INPHA PSR T G L+E   GK   +  
Sbjct: 911  FASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQGK--VSSN 968

Query: 980  KGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFY 1038
            KG        ATPF    +V  I+  L   G+   G E +Y+G TG  + + IF+GPT+Y
Sbjct: 969  KGEIGD----ATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTYY 1024

Query: 1039 QRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLF 1098
            QRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC IAHGAA  L ERLF
Sbjct: 1025 QRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERLF 1084

Query: 1099 TLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLC 1156
             +SD Y++H+C  C    +AN+               C+ C +   I +  +PY AKLL 
Sbjct: 1085 EVSDPYRIHVCNFCGLIAIANLRNNTFE---------CKGCKNKTQISQVRLPYAAKLLF 1135

Query: 1157 QELFSMGITLKF 1168
            QEL +M I  + 
Sbjct: 1136 QELMAMNIAPRL 1147


>gi|443726751|gb|ELU13810.1| hypothetical protein CAPTEDRAFT_172112 [Capitella teleta]
          Length = 1174

 Score =  619 bits (1596), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 414/1215 (34%), Positives = 625/1215 (51%), Gaps = 129/1215 (10%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP-GYDPS 74
            D+  +  +  C     S+F+E GLV  Q++S++EFI+  +Q+  +   +  ++      S
Sbjct: 18   DISSDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDTPQIDLQAEAQHTS 77

Query: 75   KKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVY 134
               E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +     
Sbjct: 78   GTVETPPRYL-IKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLTYSAPLYVDI----- 130

Query: 135  TQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDC 188
                 T    K G +     E LS +T    +G++P+M++S  C + G+      E  +C
Sbjct: 131  -----TKTLIKEGDDPI---EALSQKT---FVGKVPIMLRSTYCLLNGLTDRDLTELNEC 179

Query: 189  DFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVRL 241
              D GGYFII G+EKV +AQE++    ++V +      AYK+E       + R    + +
Sbjct: 180  PLDPGGYFIINGSEKVLIAQEKMATNTVYVFSQKESKYAYKTEIRSCLEHSSRPTSTLWI 239

Query: 242  VDMSK----FEDIKGGEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
              M++          G++++++  ++  EIP+ I+F ALG  SD++I+  I +  +D  +
Sbjct: 240  NMMARGGHGVRKNAIGQRIIAILPYIRQEIPVIIVFRALGFVSDRDILEHIIYDFDDPEM 299

Query: 297  LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
            + ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C
Sbjct: 300  MEMVKPSLDEAFVVQEQNVALNFIGARGARPGVTKEKRIKYAKEILQKEMLPHVGVSDFC 359

Query: 343  MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                         +KA FLGY+V  LL A  GRR+CD+RD + NKRL+LAG LL    + 
Sbjct: 360  -----------ETKKAYFLGYIVHRLLLAALGRRECDDRDHYGNKRLDLAGPLLAFLFRG 408

Query: 403  HIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISG 462
               +  K +    Q+ +   +    +E  +    +T+GL  + +TG W    K  +  +G
Sbjct: 409  LFRNLTKEVRLFSQKFIDQGKDFN-LELAIRTRTITDGLKYSLATGNWGDQKKAHQARAG 467

Query: 463  IVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKN 522
            +   L R   + TL  LRR    V   GK+   R  H + WG IC   TP+G   GLVKN
Sbjct: 468  VSQVLNRLTFVSTLSHLRRLNSPVGRDGKLARPRQLHNTQWGMICPAETPEGSCVGLVKN 527

Query: 523  LGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVS 581
            L +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    ++
Sbjct: 528  LALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIQDATKIFVNGCWVGIHRDPEQLMN 587

Query: 582  ELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKS 631
             L++ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VEN         +  +K 
Sbjct: 588  TLKKLRRQMDIIVSEVSMVRDISDREIRIYTDAGRICRPLLIVENQKLLLKKRHIDLLKE 647

Query: 632  LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLL 691
             E  NY +Q L+  G++E + T EEE    +     L    E      +THCE+  S +L
Sbjct: 648  REYNNYGWQDLVASGVVEYIDTLEEETIMLSMSPDQLQ---ESGYCSSYTHCEIHPSMIL 704

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H LFYPQ+PL  T  
Sbjct: 705  GVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNYHVRMDTLAHVLFYPQKPLVTTRS 763

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
             +            L   EL  G NAIVA+  + GYNQEDS+++N  +++RG FRS   R
Sbjct: 764  ME-----------YLRFRELPAGINAIVAIASYTGYNQEDSVILNEGAVDRGFFRSVFYR 812

Query: 812  SYKAEVDNKEM---QVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIG 868
            SYK     K +   ++  R   + V       ++   D LDDDG    G  +   D++IG
Sbjct: 813  SYKDSESKKGLDQEELFERPDPNHVQ----GMRMAVYDKLDDDGIIAPGTRVSGDDVLIG 868

Query: 869  KYA---------DSGA------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRS 913
            K           D+ A      D S+ ++ +E G++ +V+++ N +G  F  + +R V++
Sbjct: 869  KTLTLPENEDELDAQAKRFTKRDCSVFMRRSETGIIDQVMVTINQEGYKFCKIRVRTVKT 928

Query: 914  PCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGK 973
            P +GDKF+S HGQKG  G    QE+ PFT +GI PDI+INPHA PSR T G L+E   GK
Sbjct: 929  PQIGDKFASRHGQKGTCGIRYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGK 988

Query: 974  GIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIF 1032
               +  KG        ATPF    +V  I++ L   G+   G E L++G TG  + + IF
Sbjct: 989  --VSANKGEIGD----ATPFNDAVNVRKISDLLQDYGYHLRGNEVLFNGHTGRKLNAQIF 1042

Query: 1033 IGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAAN 1092
            IGPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC IAHGAA  
Sbjct: 1043 IGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQF 1102

Query: 1093 LHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPY 1150
            L ERLF +SD Y++H+C  C    +AN+               CR C +   I +  +PY
Sbjct: 1103 LKERLFEISDPYRVHVCNICGLIAIANLRNNTFE---------CRGCKNKTQISQVRMPY 1153

Query: 1151 GAKLLCQELFSMGIT 1165
              KLL QEL SM I 
Sbjct: 1154 ACKLLFQELMSMSIA 1168


>gi|195570991|ref|XP_002103487.1| GD18948 [Drosophila simulans]
 gi|194199414|gb|EDX12990.1| GD18948 [Drosophila simulans]
          Length = 1176

 Score =  619 bits (1595), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 415/1221 (33%), Positives = 626/1221 (51%), Gaps = 134/1221 (10%)

Query: 17   LGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPSK 75
            +  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S 
Sbjct: 18   ISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSG 77

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT 135
            + E   R+ S++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +     T
Sbjct: 78   EVETPPRF-SLKFEQIYLSKPTHWEKDGSPS-PMMPNEARLRNLTYSAPLYVDI---TKT 132

Query: 136  QKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCD 189
            +     D  +T  ++               IG+IP+M++S  C +  +      E  +C 
Sbjct: 133  KNVEGLDPVETQHQK-------------TFIGKIPIMLRSTYCLLSQLTDRDLTELNECP 179

Query: 190  FDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR---------NRLIVR 240
             D GGYFII G+EKV +AQE++    ++V +      A+K+E +          + L V 
Sbjct: 180  LDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVN 239

Query: 241  LVDMSKFEDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
            ++     ++IK    G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  +
Sbjct: 240  MMARGS-QNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 298

Query: 297  LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
            + ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C
Sbjct: 299  MEMVKPSLDEAFVVQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFC 358

Query: 343  MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                         +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL    + 
Sbjct: 359  -----------ETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRG 407

Query: 403  HIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISG 462
               +  K +    Q+ +   +    +E  +  +I+T+GL  + +TG W    K  +  +G
Sbjct: 408  LFKNLMKEVRMYTQKFIDRGKDFN-LELAIKTNIITDGLRYSLATGNWGDQKKAHQARAG 466

Query: 463  IVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKN 522
            +   L R     TL  LRR    +   GK+   R  H + WG +C   TP+G   GLVKN
Sbjct: 467  VSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKN 526

Query: 523  LGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVS 581
            L +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    ++
Sbjct: 527  LALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMA 586

Query: 582  ELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKS 631
             LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VEN         +  +K 
Sbjct: 587  TLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKE 646

Query: 632  LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLL 691
             +  NY++Q L+  G++E + T EEE    A     L +D +      +THCE+  + +L
Sbjct: 647  RDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMIL 706

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T  
Sbjct: 707  GVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRS 765

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
             +            L   EL  G N+IVA+  + GYNQEDS+++N +++ERG FRS   R
Sbjct: 766  ME-----------YLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYR 814

Query: 812  SYKAEVDNKEMQVKRRSSDDMVNFGKIQS------KIGRVDSLDDDGFPFIGANLQSGDI 865
            SYK + +NK      R  D   NF K         +    D LDDDG    G  +   D+
Sbjct: 815  SYK-DSENK------RVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDV 867

Query: 866  VIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQ 910
            VIGK                  S  D S  L+++E G+V +V+L+ N +G  F  + +R 
Sbjct: 868  VIGKTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS 927

Query: 911  VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA 970
            VR P +GDKF+S HGQKG  G    QE+  FT +G+ PDI+INPHA PSR T G L+E  
Sbjct: 928  VRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECL 987

Query: 971  LGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRS 1029
             GK    LG     G    ATPF    +V  I+  L   G+   G E +Y+G TG  + +
Sbjct: 988  QGK----LGSN--KGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINA 1041

Query: 1030 LIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA 1089
             +F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC I+HGA
Sbjct: 1042 QVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGA 1101

Query: 1090 AANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKAN 1147
            A  L ERLF +SD Y++HIC  C    +AN+               C+ C +   I +  
Sbjct: 1102 AQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFE---------CKSCKNKTQISQVR 1152

Query: 1148 VPYGAKLLCQELFSMGITLKF 1168
            +PY AKLL QEL SM I  + 
Sbjct: 1153 LPYAAKLLFQELMSMNIAPRL 1173


>gi|324120630|dbj|BAJ78706.1| RNA polymerase II second largest subunit [Oyamia lugubris]
          Length = 1175

 Score =  619 bits (1595), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 414/1222 (33%), Positives = 625/1222 (51%), Gaps = 134/1222 (10%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPS 74
            ++  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S
Sbjct: 16   EISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTS 75

Query: 75   KKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVY 134
             + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +     
Sbjct: 76   GEIENPPRYL-LKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLTYSAPLYVDI----- 128

Query: 135  TQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDC 188
                 T    K G      +E +  +     IG+IP+M++S  C + G+      E  +C
Sbjct: 129  -----TKTIVKDG------EEPIETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNEC 177

Query: 189  DFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVRL 241
              D GGYFII G+EKV +AQE++    ++V +      AYK+E       + R    + +
Sbjct: 178  PLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKFAYKAEIRSCLEHSSRPTSTLWV 237

Query: 242  VDMSKF-EDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
              M++  + IK    G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  +
Sbjct: 238  NMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 297

Query: 297  LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
            + ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C
Sbjct: 298  MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFC 357

Query: 343  MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                         +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL    + 
Sbjct: 358  -----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 403  HIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISG 462
               +  K +    Q+ +   +    +E  +   I+T+GL  + +TG W    K  +  +G
Sbjct: 407  LFKNLMKEVRMYAQKFIDRGKDFN-LELAIKTRIITDGLRYSLATGNWGDQKKAHQARAG 465

Query: 463  IVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKN 522
            +   L R     TL  LRR    +   GK+   R  H + WG IC   TP+G   GLVKN
Sbjct: 466  VSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKN 525

Query: 523  LGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVS 581
            L +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    ++
Sbjct: 526  LALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMA 585

Query: 582  ELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVE---------NMGKIKS 631
             LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VE         ++  +K 
Sbjct: 586  TLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVEGGNLLLKKRHVDMLKE 645

Query: 632  LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLL 691
             E  N+ +Q L+  G++E + T EEE    A     L ++ E      +THCE+  + +L
Sbjct: 646  REYNNFGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQEKEYAYCTTYTHCEIHPAMIL 705

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T  
Sbjct: 706  GVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRS 764

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
             +            L   EL  G N+IVA+  + GYNQEDS+++N +++ERG FRS   R
Sbjct: 765  ME-----------YLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYR 813

Query: 812  SYK----AEVDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGD 864
            SYK      + ++E Q +   R +   M N           D LDDDG    G  +   D
Sbjct: 814  SYKDAESKRIGDQEEQFEKPTRATCQGMRN--------ALYDKLDDDGIIAPGIRVSGDD 865

Query: 865  IVIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLR 909
            +VIGK                  +  D S  L+++E G+V +V+L+ N +G  F  + +R
Sbjct: 866  VVIGKTITLPDNEDELEGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVR 925

Query: 910  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEA 969
             VR P +GDKF+S HGQKG  G    QE+  FT +G+ PDI+INPHA PSR T G L+E 
Sbjct: 926  SVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTAEGLTPDIIINPHAIPSRMTIGHLIEC 985

Query: 970  ALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVR 1028
              GK   +  KG        ATPF    +V  I+  L   G+   G E +Y+G TG  + 
Sbjct: 986  LQGK--VSANKGEIGD----ATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKIN 1039

Query: 1029 SLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG 1088
            + +F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC IAHG
Sbjct: 1040 AQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHG 1099

Query: 1089 AAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKA 1146
            AA  L ERLF +SD Y++H+C  C    +AN+               C+ C +   I + 
Sbjct: 1100 AAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---------CKGCKNKTQISQV 1150

Query: 1147 NVPYGAKLLCQELFSMGITLKF 1168
             +PY AKLL QEL SM I  + 
Sbjct: 1151 RLPYAAKLLFQELMSMNIAPRL 1172


>gi|229662009|gb|ACQ84444.1| DNA-dependent RNA polymerase II beta subunit [Epichloe festucae]
          Length = 1261

 Score =  619 bits (1595), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 425/1268 (33%), Positives = 650/1268 (51%), Gaps = 162/1268 (12%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKG-EGEWRYA 84
            C     SFF   GLVS Q +S++EF +  +Q   + +    ++    PS  G +   R  
Sbjct: 25   CWTVISSFFETKGLVSQQTDSFDEFTQTTIQDLVNEYSTITLDQPNPPSPPGIKIALRRY 84

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT--QKRV--- 139
             ++FG V + +P+  +   G    + P   R +N+TY+S + + +  +V    ++ V   
Sbjct: 85   EIKFGTVMVSRPTI-SETDGTVTSLLPYECRDRNLTYASPLYINITKKVSAAIEREVPLH 143

Query: 140  ------TSDKFKTGREQ----YIQKEVLSDETTN--------IIIGRIPVMVKSDLCWMK 181
                   ++  KTG       + Q+E   D+           + +G++P+MVKS +C + 
Sbjct: 144  EMDDAQQAEYAKTGENPTKLIWEQEESPEDDDAGKSEDWKNMVFVGKLPIMVKSKICHLS 203

Query: 182  GVEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKS 230
                       +C +D GGYF+I G+EKV +AQE+     + V      +   +T   +S
Sbjct: 204  RETDESLFMVNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSPFTYTAEIRS 263

Query: 231  E-NKRNRLI--VRLVDMSKFEDIKGG---EKVLSVYFLSTEIPIWILFFALGVSSDKEIV 284
               K +RLI  ++L    K +  +GG       ++ F+ +++PI I+F ALGV SD++I+
Sbjct: 264  ALEKGSRLISSLQLKLYGKGDSARGGFGQTIHTTLPFVKSDLPIAIVFRALGVVSDEDIL 323

Query: 285  NLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTE---- 340
            N I +  +D  +L +L   I +A   C + R+   AL ++ K  +G     G   E    
Sbjct: 324  NHICYDRKDSQMLEMLRPCIEEA--FCVQDRE--VALDFIGK--RGNRDQAGLGREKRVR 377

Query: 341  ---ECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAG 393
               + +     P +  T+    +KA FLGYMV  LLQ   GRR+ D+RD F  KRL+LAG
Sbjct: 378  VAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLDLAG 437

Query: 394  ELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHP 453
             LL +  +  +      ++  L+R + G+R    +   +    L+NGL  + +TG W   
Sbjct: 438  PLLAKLFRGIVRRMNNELSNYLRRCVEGNRHFN-LAVGIKPGTLSNGLKYSLATGNWGDQ 496

Query: 454  FKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPD 513
             K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+
Sbjct: 497  KKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPE 556

Query: 514  GENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGV 572
            G+ CGLVKNL +   VS  S  EP+ E + N GME + +          K+FV+G W+GV
Sbjct: 557  GQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVEEYEPLRYPHATKIFVNGTWVGV 616

Query: 573  CKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------- 625
             +D    VS++   RR+  L  +V + R+    E +IF DAGR++RP+  V+        
Sbjct: 617  HQDPKHLVSQVLDTRRKSYLQYEVSLVREIRDQEFKIFSDAGRVMRPVFTVQQEDDPETG 676

Query: 626  ---------------MGKIKSLEGKNYT----FQALLDHGIIELVGTEEEED---CCTAW 663
                           + K ++   ++ +    ++ L+  G +E +  EEEE    C T  
Sbjct: 677  IEKGHLVLSKELVNKLAKEQAEPSEDPSEKIGWEGLIRAGAVEYLDAEEEETSMICMTPE 736

Query: 664  GIK-YLLK--------DIED---------KKPIK--FTHCELDMSFLLGLSCGIIPFANH 703
             ++ Y L+        DI D           P    +THCE+  S +LG+   IIPF +H
Sbjct: 737  DLELYRLQKAGVALDDDIGDDLNRRLKTRTNPTTHMYTHCEIHPSMILGICASIIPFPDH 796

Query: 704  DHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHN 763
            + + R  YQS     QA+GF  TN S R+DT+++ L+YPQ+PL  T   +          
Sbjct: 797  NQSPRNTYQS-AMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSME---------- 845

Query: 764  HILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQ 823
              L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   RSY     ++E +
Sbjct: 846  -FLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYS----DQEKK 900

Query: 824  VKRRSSD---DMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA-------DS 873
            V    ++      +   ++ K G  D LD+DG    G  +   DI+IGK A       D 
Sbjct: 901  VGLNYTEVFEKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDQENQDL 960

Query: 874  GA--------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHG 925
            G         D S  L+ TE G++  V+L+ N D   +  V +R  + P +GDKF+S HG
Sbjct: 961  GTRTTVHQRRDISTPLRSTENGIIDSVILTVNADNVKYVKVRVRTTKVPQIGDKFASRHG 1020

Query: 926  QKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSG 985
            QKG +G    QE+ PFT +G+ PDI+INPHA PSR T   L+E  L K ++ L      G
Sbjct: 1021 QKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSK-VSTL-----EG 1074

Query: 986  LKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMS 1045
            ++  ATPF   +VD+++E L + G+   G E +Y+G TG+ +R+ +F GPT+YQRL HM 
Sbjct: 1075 MEGDATPFTDVTVDSVSELLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLRHMV 1134

Query: 1046 EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQ 1105
            +DK+  R  GPV  +TRQPV  R R GG++FGEMERDC+IAHGAAA L ERLF +SD+++
Sbjct: 1135 DDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAFR 1194

Query: 1106 MHICRKC---KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSM 1162
            +H+C  C     +AN+ ++            CR C +   I + ++PY AKLL QEL SM
Sbjct: 1195 VHVCEICGLMTPIANLSKQSFE---------CRPCKNKTKIAQIHIPYAAKLLFQELQSM 1245

Query: 1163 GITLKFDT 1170
             I  +  T
Sbjct: 1246 NIAARMFT 1253


>gi|387018202|gb|AFJ51219.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Crotalus
            adamanteus]
          Length = 1167

 Score =  619 bits (1595), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 426/1238 (34%), Positives = 624/1238 (50%), Gaps = 154/1238 (12%)

Query: 2    DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-D 60
            D DD+  T      DL +E     C     S+F+E GLV  Q++S++EFI+  +Q+   D
Sbjct: 4    DEDDDEITP-----DLWQEA----CWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 54

Query: 61   SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
            +    +       + + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+T
Sbjct: 55   APPIDLQAEAQHATGEVEEPPRYL-LKFEQIYLSKPTHWERDGAPS-PMMPNEARLRNLT 112

Query: 121  YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
            YS+ + V +          T    K G +Q      L  +     IG+IP+M++S  C +
Sbjct: 113  YSAPLYVDI----------TKTVIKEGEDQ------LQTQHQKTFIGKIPIMLRSTYCLL 156

Query: 181  KGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR 234
             G+      E  +C  D GGYFII G+EKV +AQE++    ++V        AY  E + 
Sbjct: 157  NGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRS 216

Query: 235  N-------------RLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDK 281
                           ++ R    +K   I G   V ++ ++  E+PI I+F ALG  SD+
Sbjct: 217  CLENSSRPTSTIWVSMLARGGQGAKKSAI-GQRIVATLPYIKQEVPIIIVFRALGFVSDR 275

Query: 282  EIVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKL 327
            +I+  I +  ED  ++ ++  S+ +A      N    F   R A         +KY  ++
Sbjct: 276  DILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEV 335

Query: 328  IKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNK 387
            ++    P    ++ C             +KA FLGYMV  LL A  GRR+ D+RD + NK
Sbjct: 336  LQKEMLPHVGVSDFC-----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNK 384

Query: 388  RLELAGELLERELKVHIAHARKRMAKALQRD--LYGDRTVR-----PIEYYLDASILTNG 440
            RL+LAG LL        A   + M K L ++  +Y  + +       +E  +   I+++G
Sbjct: 385  RLDLAGPLL--------AFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDG 436

Query: 441  LSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHP 500
            L  + +TG W    K  +  +G+   L R     TL  LRR    +   GK+   R  H 
Sbjct: 437  LKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHN 496

Query: 501  SHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGG 559
            + WG +C   TP+G   GLVKNL +   +S  S   PI E L    ME L + +  ++  
Sbjct: 497  TLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIAD 556

Query: 560  KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILR 618
              K+FV+G W+G+ KD    ++ LR+ RR+ ++  ++V + RD  + E+RI+ DAGRI R
Sbjct: 557  ATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICR 616

Query: 619  PLLVVE---------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLL 669
            PLL+VE         ++ ++K  E  NY++Q L+  G++E + T EEE    A       
Sbjct: 617  PLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD--- 673

Query: 670  KDIEDKKPI---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTT 726
             D+++K       +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   T
Sbjct: 674  -DLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYIT 731

Query: 727  NPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLG 786
            N  +R+DTL+H L+YPQ+PL  T   +            L   EL  G N+IVA+  + G
Sbjct: 732  NFHVRMDTLAHVLYYPQKPLVTTRSME-----------YLRFRELPAGINSIVAIASYTG 780

Query: 787  YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNK---EMQVKRRSSDDMVNFGKIQSKIG 843
            YNQEDS++MNR++++RG FRS   RSYK +   K   + +V  + S +         +  
Sbjct: 781  YNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGYDQEEVFEKPSRETCQ----GMRHA 836

Query: 844  RVDSLDDDGFPFIGANLQSGDIVIGKYAD---------------SGADHSIKLKHTERGM 888
              D LDDDG    G  +   D++IGK                  +  D S  L+ +E G+
Sbjct: 837  IYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGI 896

Query: 889  VQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVP 948
            V +V+++ N +G  F  + +R VR P +GDKF+S HGQKG  G    QE+ PFT +GI P
Sbjct: 897  VDQVMITLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITP 956

Query: 949  DIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHR 1007
            DI+INPHA PSR T G L+E   GK   +  KG        ATPF    +V  I+  L  
Sbjct: 957  DIIINPHAIPSRMTIGHLIECLQGK--VSANKGEIGD----ATPFNDAVNVQKISNLLSD 1010

Query: 1008 AGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVAD 1067
             G+   G E LY+G TG  + S IFIGPT+YQRL HM +DK+  R  GP+  L RQP+  
Sbjct: 1011 YGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEG 1070

Query: 1068 RKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGR 1127
            R R GG++FGEMERDC IAHGAA  L ERLF  SD YQ+H+C  C  +A           
Sbjct: 1071 RSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAI-------ANT 1123

Query: 1128 KVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
            +     CR C +   I    +PY  KLL QEL SM I 
Sbjct: 1124 RTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIA 1161


>gi|324120676|dbj|BAJ78729.1| RNA polymerase II second largest subunit [Stenopsyche marmorata]
          Length = 1174

 Score =  619 bits (1595), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 415/1230 (33%), Positives = 628/1230 (51%), Gaps = 152/1230 (12%)

Query: 17   LGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKK 76
            +  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+        IVE    P   
Sbjct: 15   ISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQR--------IVEDS--PQID 64

Query: 77   GEGEWRYAS----------MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMK 126
             + E ++AS          ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + 
Sbjct: 65   LQAEAQHASGEIETPPHYLLKFEQIYLSKPTHWEKDGAAAA-MMPNEARLRNLTYSAPLY 123

Query: 127  VKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV--- 183
            V +          T    K G      ++ +  +     IG+IP+M++S  C + G+   
Sbjct: 124  VDI----------TKTIVKEG------EDPIETQHQKTFIGKIPIMLRSTYCLLNGLIDR 167

Query: 184  ---EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-------NK 233
               E  +C  D GGYFII G+EKV +AQE++    ++V +      A+K+E       + 
Sbjct: 168  DLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKFAFKAEIRSCLEHSS 227

Query: 234  RNRLIVRLVDMSKF-EDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLID 288
            R    + +  MS+  + IK    G++++++  ++  EIPI I+F ALG  +D++I+  I 
Sbjct: 228  RPTSTLWVNMMSRGGQSIKKNAIGQRIIAIVPYIKQEIPIMIVFRALGFVADRDILEHII 287

Query: 289  FTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFP 334
            +  +D  ++ ++  S+ +A      N    F   R A         +KY  ++++    P
Sbjct: 288  YDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLP 347

Query: 335  PGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGE 394
                ++ C             +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG 
Sbjct: 348  HVGVSDFC-----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGP 396

Query: 395  LLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPF 454
            LL    +    +  K +    Q+ +   +    +E  +   I+T+GL  + +TG W    
Sbjct: 397  LLAFLFRGLFKNLMKEVRMYAQKFIDRGKDFN-LELAIKTKIITDGLRYSLATGNWGDQK 455

Query: 455  KRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDG 514
            K  +  +G+   L R     TL  LRR    +   GK+   R  H + WG IC   TP+G
Sbjct: 456  KAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEG 515

Query: 515  ENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVC 573
               GLVKNL +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ 
Sbjct: 516  AAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIH 575

Query: 574  KDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------- 625
            +D    ++ LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+V+N       
Sbjct: 576  RDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVDNGILLLKK 635

Query: 626  --MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHC 683
              +  +K  +  NY++Q L+  G++E + T EEE    A     L ++ E      +THC
Sbjct: 636  RHIDMLKERDLNNYSWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQEKEYAYCTTYTHC 695

Query: 684  ELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQ 743
            E+  + +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP 
Sbjct: 696  EIHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPH 754

Query: 744  RPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERG 803
            +PL  T   +            L   EL  G N+IVA+  + GYNQEDS+++N +++ERG
Sbjct: 755  KPLVTTRSME-----------YLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERG 803

Query: 804  MFRSEHIRSYK----AEVDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFI 856
             FRS   RSYK      + ++E Q +   R +   M N           D LDDDG    
Sbjct: 804  FFRSVFYRSYKDSESKRIGDQEEQFEKPTRTTCQGMRN--------ALYDKLDDDGIIAP 855

Query: 857  GANLQSGDIVIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGK 901
            G  +   D+VIGK                  +  D S  L+++E G+V +V+L+ N +G 
Sbjct: 856  GIRVSGDDVVIGKTITLPENDDELDGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGY 915

Query: 902  NFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQ 961
             F  + +R VR P +GDKF+S HGQKG  G    QE+ PFT +G+ PDI+INPHA PSR 
Sbjct: 916  KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRM 975

Query: 962  TPGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYD 1020
            T G L+E   GK   +  KG        ATPF    +V  I+  L   G+   G E +Y+
Sbjct: 976  TIGHLIECIQGK--VSSNKGEIGD----ATPFNDAVNVQKISTLLQEYGYHLRGNEVMYN 1029

Query: 1021 GRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEME 1080
            G TG  + + +F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEME
Sbjct: 1030 GHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEME 1089

Query: 1081 RDCLIAHGAAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICD 1138
            RDC IAHGAA  L ERLF +SD Y++H+C  C    +AN+               C+ C 
Sbjct: 1090 RDCQIAHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---------CKGCK 1140

Query: 1139 SGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
            +   I +  +PY AKLL QEL SM I  + 
Sbjct: 1141 NKTQISQVRLPYAAKLLFQELMSMNIAPRL 1170


>gi|224049409|ref|XP_002192218.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Taeniopygia
            guttata]
          Length = 1174

 Score =  619 bits (1595), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 425/1234 (34%), Positives = 620/1234 (50%), Gaps = 146/1234 (11%)

Query: 2    DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-D 60
            D DD+  T      DL +E     C     S+F+E GLV  Q++S++EFI+  +Q+   D
Sbjct: 11   DEDDDEITP-----DLWQEA----CWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 61   SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
            +    +       S + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+T
Sbjct: 62   APPIDLQAEAQHASGEVEEPPRYL-LKFEQIYLSKPTHWERDGAPS-PMMPNEARLRNLT 119

Query: 121  YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
            YS+ + V +          T    K G +Q      L  +     IG+IP+M++S  C +
Sbjct: 120  YSAPLYVDI----------TKTVIKEGEDQ------LQTQHQKTFIGKIPIMLRSTYCLL 163

Query: 181  KGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR 234
             G+      E  +C  D GGYFII G+EKV +AQE++    ++V        AY  E + 
Sbjct: 164  NGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRS 223

Query: 235  N-------------RLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDK 281
                           ++ R    +K   I G   V ++ ++  E+PI I+F ALG  SD+
Sbjct: 224  CLENSSRPTSTIWVSMLARGGQGAKKSAI-GQRIVATLPYIKQEVPIIIVFRALGFVSDR 282

Query: 282  EIVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKL 327
            +I+  I +  ED  ++ ++  S+ +A      N    F   R A         +KY  ++
Sbjct: 283  DILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEV 342

Query: 328  IKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNK 387
            ++    P    ++ C             +KA FLGYMV  LL A  GRR+ D+RD + NK
Sbjct: 343  LQKEMLPHVGVSDFC-----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNK 391

Query: 388  RLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFST 447
            RL+LAG LL    +    +  K +    Q+ +   +    +E  +   I+++GL  + +T
Sbjct: 392  RLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFN-LELAIKTRIISDGLKYSLAT 450

Query: 448  GAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKIC 507
            G W    K  +  +G+   L R     TL  LRR    +   GK+   R  H + WG +C
Sbjct: 451  GNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVC 510

Query: 508  FLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVD 566
               TP+G   GLVKNL +   +S  S   PI E L    ME L + +  ++    K+FV+
Sbjct: 511  PAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVN 570

Query: 567  GDWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVE- 624
            G W+G+ KD    ++ LR+ RR+ ++  ++V + RD  + E+RI+ DAGRI RPLL+VE 
Sbjct: 571  GCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEK 630

Query: 625  --------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKK 676
                    ++ ++K  E  NY++Q L+  G++E + T EEE    A        D+++K 
Sbjct: 631  QKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAM----TPDDLQEKG 686

Query: 677  PI---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVD 733
                  +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+D
Sbjct: 687  VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMD 745

Query: 734  TLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSL 793
            TL+H L+YPQ+PL  T   +            L   EL  G N+IVA+  + GYNQEDS+
Sbjct: 746  TLAHVLYYPQKPLVTTRSME-----------YLRFRELPAGINSIVAIASYTGYNQEDSV 794

Query: 794  VMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGR------VDS 847
            +MNR++++RG FRS   RSYK        Q  ++  D    F K   +  +       D 
Sbjct: 795  IMNRSAVDRGFFRSVFYRSYKE-------QESKKGYDQEEVFEKPTRETCQGMRHAIYDK 847

Query: 848  LDDDGFPFIGANLQSGDIVIGKYAD---------------SGADHSIKLKHTERGMVQKV 892
            LDDDG    G  +   D++IGK                  +  D S  L+ +E G+V +V
Sbjct: 848  LDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRFTKRDCSTFLRTSETGIVDQV 907

Query: 893  VLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVI 952
            +++ N +G  F  + +R VR P +GDKF+S HGQKG  G    QE+ PFT +GI PDI+I
Sbjct: 908  MVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIII 967

Query: 953  NPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFS 1011
            NPHA PSR T G L+E   GK   +  KG        ATPF    +V  I+  L   G+ 
Sbjct: 968  NPHAIPSRMTIGHLIECLQGK--VSANKGEIGD----ATPFNDAVNVQKISNLLSDYGYH 1021

Query: 1012 KWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRF 1071
              G E LY+G TG  + S IFIGPT+YQRL HM +DK+  R  GP+  L RQP+  R R 
Sbjct: 1022 LRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRD 1081

Query: 1072 GGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRG 1131
            GG++FGEMERDC IAHGAA  L ERLF  SD YQ+H+C  C  +A           +   
Sbjct: 1082 GGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAI-------ANTRTHT 1134

Query: 1132 PYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
              CR C +   I    +PY  KLL QEL SM I 
Sbjct: 1135 YECRGCRNKTQISLVRMPYACKLLFQELMSMSIA 1168


>gi|324500827|gb|ADY40377.1| DNA-directed RNA polymerase II subunit RPB2 [Ascaris suum]
          Length = 1173

 Score =  619 bits (1595), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 409/1219 (33%), Positives = 626/1219 (51%), Gaps = 133/1219 (10%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPS 74
            ++  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S
Sbjct: 19   EISSEQWQEACWVVISAYFDEKGLVRQQLDSFDEFIQMNVQRIVEDSPPVELQSEVQHFS 78

Query: 75   KKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVY 134
               E   ++A ++  Q+ L KP+ +  +G     M P  ARL+N+TYSS + V +     
Sbjct: 79   GDIENPTKFA-LKLDQIYLSKPTHWEKDGAPT-PMMPNEARLRNLTYSSPLYVDIT---- 132

Query: 135  TQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDC 188
              K V+ D       +Y            + +G+IP+M++S  C +  +      E  +C
Sbjct: 133  --KTVSRDGEDPKESKY----------EKVFVGKIPIMLRSSYCMLSNMSDRDLTELNEC 180

Query: 189  DFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVRL 241
              D GGYFII G+EKV +AQE++    ++V +      AYK+E       + R    + +
Sbjct: 181  PLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKTECRSCLENSSRPTSTLWV 240

Query: 242  VDMSKFEDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSIL 297
              M++    K    G++++++  ++  EIPI I+F ALG  SD +I+  I +  ED  ++
Sbjct: 241  NMMARGGSTKKSAMGQRIIAILPYIKQEIPIMIVFRALGFVSDHDILEHIIYDFEDPEMM 300

Query: 298  NILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEECM 343
             ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C 
Sbjct: 301  EMVKPSLDEAFVIQEQNVALNFIGARGAKPGVTKEQRIKYAKEILQKEMLPHVGISDFC- 359

Query: 344  NTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVH 403
                        +KA F+GYMV  LL A  GRR+ D+RD   NKRL+LAG LL    +  
Sbjct: 360  ----------ETKKAYFIGYMVHRLLLAALGRRELDDRDHIGNKRLDLAGPLLAFLFRAL 409

Query: 404  IAHARKRMAKALQRDLYGDRTVRPIEYYLDA----SILTNGLSRAFSTGAWSHPFKRTER 459
              +  K +    Q+ +  +      ++ LDA    S +T GL+ + +TG W    K  + 
Sbjct: 410  FKNLLKEVRLTAQKYINKNG-----DFILDACVKTSTITRGLAYSLATGNWGDQKKAHQS 464

Query: 460  ISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGL 519
             +G+   L R     TL  LRR    +   GK+   R  H + WG +C   TP+G+  GL
Sbjct: 465  RAGVSQVLNRLTYTATLSHLRRCNSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGL 524

Query: 520  VKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLS 578
            VKNL +   +S  S+ EPI E L    ME L + A  ++    K+FV+G W+G+ +D   
Sbjct: 525  VKNLALMAYISVGSLPEPILEFLEEWSMENLEEVAPSAIADATKIFVNGAWVGIHRDPEQ 584

Query: 579  FVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMG---KIKSLE- 633
             +S L++ RR  ++  ++V + RD    E+RI+ DAGR+ RPLL+VEN     K K ++ 
Sbjct: 585  LMSTLKKLRREMDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVENQKLVLKKKHIDQ 644

Query: 634  ----GKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPI-KFTHCELDMS 688
                  NY +  L+  G++EL+   EEE    A     + +D++       +THCE+  +
Sbjct: 645  LKDTNDNYAWSDLVAGGVVELIDAMEEETVMLAM----MPEDLKAGGYCDTYTHCEIHPA 700

Query: 689  FLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFR 748
             +LG+   IIPF +H+ + R  YQS     QA+G  TTN  +R+DTL+H L+YPQ+PL  
Sbjct: 701  MILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVT 759

Query: 749  TMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSE 808
            T   +            L   EL  G NAIVA+  + GYNQEDS++MN++ ++RG+FRS 
Sbjct: 760  TRSME-----------YLRFNELPAGINAIVAILSYTGYNQEDSVIMNQSGIDRGLFRSV 808

Query: 809  HIRSYK---AEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDI 865
              RSY+   A +DN   ++  + + D  +      +    D LD+DG    G  +   D+
Sbjct: 809  FYRSYRDQEANLDNANEELIEKPTRDKCS----GMRHSLYDKLDEDGIISPGMRVSGDDV 864

Query: 866  VIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQ 910
            +IGK                  +  D S  L+ +E G+V +V+L+ N DG  F  + +R 
Sbjct: 865  IIGKTISLPDVEDDLEANTKKYTKRDASTFLRSSETGIVDQVMLTLNTDGNKFVKIRVRS 924

Query: 911  VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA 970
            VR P +GDKF+S HGQKG +G +  QE+ PFT +GI PDI+INPHA PSR T G L+E  
Sbjct: 925  VRLPQIGDKFASRHGQKGTMGIMYRQEDMPFTNEGITPDIIINPHAVPSRMTIGHLIECL 984

Query: 971  LGKGIAALGKGICSGLKRYATPFA-TPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRS 1029
             GK   +  KG        ATPF  T +V  I+  L   G+   G E +Y+G TG  + +
Sbjct: 985  QGK--LSANKGEIGD----ATPFNDTVNVQKISNLLSEYGYHLRGNEIMYNGHTGHKLTT 1038

Query: 1030 LIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA 1089
             +F+GPT+YQRL HM +DK+  R  GPV  + RQP+  R R GG++FGEMERDC I+HGA
Sbjct: 1039 QVFLGPTYYQRLKHMVDDKIHSRARGPVQMMNRQPMEGRARDGGLRFGEMERDCQISHGA 1098

Query: 1090 AANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVP 1149
            A  L ERLF +SD Y +++C  C         +V    +     C+ C +   +    +P
Sbjct: 1099 AQFLRERLFEVSDPYHVYVCNNCG-------LIVIANLRTNTFECKACRNKTQVSAIRIP 1151

Query: 1150 YGAKLLCQELFSMGITLKF 1168
            Y  KLL QEL SM I  + 
Sbjct: 1152 YACKLLFQELMSMSIAPRL 1170


>gi|2654279|emb|CAA47069.1| DNA-directed RNA polymerase [Euplotes octocarinatus]
          Length = 1194

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 419/1229 (34%), Positives = 632/1229 (51%), Gaps = 138/1229 (11%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP--GYDP 73
            D+ +E  +        ++F+++GLVS QI+S++ F+   +Q          ++P   + P
Sbjct: 27   DIDDEITQEDAWAVIRAYFDQHGLVSQQISSFDRFLSYTVQDIVTENNTISIQPELQFAP 86

Query: 74   SKKGEG-EWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQ 132
                E  E     +  GQV +++   F       + +FP  ARL+N+TY + + V+V+ Q
Sbjct: 87   GSMNESRENIKYDIILGQVRVNEKPRFKEFDDKYNVIFPNEARLRNLTYQTSLYVEVKKQ 146

Query: 133  VYTQKRVTSDKFKTGREQYIQKEVLSDETTN--IIIGRIPVMVKSDLCWMKGV------E 184
                K V  D            EV+ DE T   + +G++PVMV+S  C + G+      E
Sbjct: 147  ---DKVVEQDG----------SEVIIDEQTEKEVYMGKVPVMVRSGFCSLNGIDESERWE 193

Query: 185  KGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSE-----NKR 234
              +C  D GGYFII G EKV VA E++    ++V      +   W    +S+        
Sbjct: 194  MKECFHDQGGYFIINGGEKVIVAHERMANNFVYVFHKKQPSKFSWVAEVRSQVDASNRPP 253

Query: 235  NRLIVRLVDMSKFEDIKGGE----KVL------SVYFLSTEIPIWILFFALGVSSDKEIV 284
            N+  +++   SK +   GG     K+       S+ +++ +IP+ ILF AL   SDKEI+
Sbjct: 254  NQFSIKM--YSKGQRRAGGSFSGGKIFGQTLCASIPYINADIPVAILFRALNCISDKEIL 311

Query: 285  NLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES-----T 339
            + I +   D  ++  + AS+ +       F    +AL Y+    +GT    G        
Sbjct: 312  DRICYDSTDSHMMEAMRASLEEGT----PFLTQEDALSYIGS--RGTAGGVGREERIRHA 365

Query: 340  EECMNTYLFPSLHGT----KQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGEL 395
             E +  +  P +        QK+ F+GYM   LL A+ GR K D+RD +  KRL++AG L
Sbjct: 366  REILKRHFLPHVSTKDSCESQKSYFIGYMCHRLLNAHLGRIKEDDRDHYGKKRLDMAGSL 425

Query: 396  LE---RELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSH 452
            L    R L         R  KA Q D  GD     I       I+++GL  A +TG W  
Sbjct: 426  LGMLFRNLFRRFVKEAGRYLKA-QAD-KGDSL--NITKAFKKDIISDGLKYALATGNWGT 481

Query: 453  PFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTP 512
                    +G+   L R     TL  LRR    +Q +GK+   R  H +HWG +C   TP
Sbjct: 482  NAAGEVSKTGVSQVLNRLTFASTLSHLRRLNTPLQKSGKLTKPRQLHNTHWGMVCPAETP 541

Query: 513  DGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIG 571
            +G+ CGLVKNL +   VS  S  E + E L N G E L   +   +    KVFV+G WIG
Sbjct: 542  EGQACGLVKNLSLMAFVSVGSAAERLREILENYGTENLVSISPSDIHESTKVFVNGCWIG 601

Query: 572  VCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN----MG 627
            +  +S   ++ ++  RR   +P ++ I RD    EV+ + D GR+ RPL +V++    + 
Sbjct: 602  IHNESEDLINNIKLMRRALLIPKEISIVRDIPNREVKFYTDHGRVQRPLFIVDDNRLILK 661

Query: 628  KIKSLEGKNY------TFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIK-F 680
            K   +  +++       F   L  G++E +  EEEE    A  +     D+E++     +
Sbjct: 662  KTHVVRLQDHERSDSMNFDDTLKEGLVEFLDVEEEETSMIAMNVG----DLENRNYCSTY 717

Query: 681  THCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLF 740
            THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   +N  IR+DTL+H L+
Sbjct: 718  THCEIHPSMILGVCASIIPFPDHNQSPRNCYQSAM-GKQAMGVYCSNYQIRMDTLAHVLY 776

Query: 741  YPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASL 800
            YPQ+PL   +++  L  P     H+    EL  G ++IVA+  + GYNQ DS++M++A +
Sbjct: 777  YPQKPL---VVARSLDFP-----HV---KELPPGCDSIVAITCYTGYNQVDSVIMSQAPI 825

Query: 801  ERGMFRSEHIRSYKAEVDNKEMQVKR--RSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGA 858
            +RG FRS     +   +    ++V+R  R  D  V    +  + G    LD DG  F G 
Sbjct: 826  DRGCFRS----VFYKNIFEIPVRVERLLRYPDSTV----VGRRNGDYTKLDIDGLIFPGK 877

Query: 859  NLQSGDIVIGKYADS---------------GADHSIKLKHTERGMVQKVVLSSNDDGKNF 903
            N+   DI+IGK A                   D S  L+H+E+G++  V+L+SN++G +F
Sbjct: 878  NVLGDDIIIGKTALPRNLFNDEMDDQTNLIKKDDSTSLRHSEKGIIDSVILTSNEEGDSF 937

Query: 904  SVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTP 963
            + V +R +R P +GDKF+S HGQKG +G    QE+ PFT +GI+PDI++NPHA PSR T 
Sbjct: 938  TKVKMRAIRIPQIGDKFASRHGQKGTVGMTYRQEDIPFTQEGIIPDIIVNPHAIPSRMTI 997

Query: 964  GQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRT 1023
            G L+E  L   +A        G +  ATPF   +V+ I+  LHR G+ K G E +YDG T
Sbjct: 998  GHLIEC-LASKVACF-----KGEEGDATPFQDVTVEHISNDLHRLGYQKRGNEVMYDGWT 1051

Query: 1024 GEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDC 1083
            G  + ++IF+GPT+YQRL HM +DK+  R+ GP+  LTRQP   R R GG++FGEMERDC
Sbjct: 1052 GRKMDTMIFLGPTYYQRLKHMVDDKIHSRSRGPLQILTRQPTEGRSRHGGLRFGEMERDC 1111

Query: 1084 LIAHGAAANLHERLFTLSDSYQMHICRKCKNV--ANVIQRVVGGGRKVRGPYCRICDSGD 1141
            +++HGAA  L ERLF +SD Y +H+CR C  +  AN+ Q+            CR C +  
Sbjct: 1112 MVSHGAARFLKERLFDVSDCYTVHVCRICGLICEANLRQQKY---------LCRGCQNST 1162

Query: 1142 DIVKANVPYGAKLLCQELFSMGITLKFDT 1170
            +I +  +PY  KLL QEL +M I  +  T
Sbjct: 1163 NICQVGLPYACKLLFQELMAMQIAPRMIT 1191


>gi|242009479|ref|XP_002425513.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative
            [Pediculus humanus corporis]
 gi|212509368|gb|EEB12775.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative
            [Pediculus humanus corporis]
          Length = 1175

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 415/1239 (33%), Positives = 633/1239 (51%), Gaps = 138/1239 (11%)

Query: 1    MDSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFD 60
            M  +++ + +     ++  E  +  C     S+F+E GLV  Q++S++EFI+  +Q+  +
Sbjct: 1    MYEEEDQYENDEDAGEISSELWQEACWIVINSYFDEKGLVRQQLDSFDEFIQMSVQRIVE 60

Query: 61   SFGETIVEPGYDPSKKGEGEWR---YASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQ 117
               +T +      ++   GE     +  ++F Q+ L KP+ +  +G     M P  ARL+
Sbjct: 61   ---DTPIIDLQAEAQHASGEIENPPHYLLKFEQIYLSKPTHWEKDGAPS-PMMPNEARLR 116

Query: 118  NMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDL 177
            N+TYS+ + V +          T    K G +    K   S       IG+IP+M++S  
Sbjct: 117  NLTYSAPLYVDI----------TKKIIKEGEDPIETKHQKS------FIGKIPIMLRSTY 160

Query: 178  CWMKGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE 231
            C + G+      E  +C  D GGYFII G+EKV +AQE++    ++V +      AYK+E
Sbjct: 161  CLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKFAYKAE 220

Query: 232  -------NKRNRLIVRLVDMSKF-EDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSS 279
                   + R    + +  M++  + IK    G++++++  ++  EIPI I+F ALG  +
Sbjct: 221  IRSCLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVA 280

Query: 280  DKEIVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVD 325
            D++I+  I +  +D  ++ ++  S+ +A      N    F   R A         +KY  
Sbjct: 281  DRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAK 340

Query: 326  KLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFR 385
            ++++    P    ++ C             +KA FLGYMV  LL A  GRR+ D+RD + 
Sbjct: 341  EILQKEMLPHVGVSDFC-----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYG 389

Query: 386  NKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAF 445
            NKRL+LAG LL    +    +  K +    Q+ +   +    +E  +   I+T+GL  + 
Sbjct: 390  NKRLDLAGPLLAFLFRGLFKNLMKEVRMFAQKFIDRGKDFN-LELAIKTKIITDGLRYSL 448

Query: 446  STGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGK 505
            +TG W    K  +  +G+   L R     TL  LRR    +   GK+   R  H + WG 
Sbjct: 449  ATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGM 508

Query: 506  ICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVF 564
            IC   TP+G   GLVKN+ +   +S  S   PI E L    ME L + A  ++    K+F
Sbjct: 509  ICPAETPEGAAVGLVKNIALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIF 568

Query: 565  VDGDWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVV 623
            V+G W+G+ +D    ++ LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+V
Sbjct: 569  VNGCWVGIHRDPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIV 628

Query: 624  E---------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIED 674
            E         ++  +K  E  N+ +Q L+  G++E + T EEE    A     L +D E 
Sbjct: 629  EGGQLLLKKNHVNMLKEREYNNFGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQDKEY 688

Query: 675  KKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDT 734
                 +THCE+  + +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DT
Sbjct: 689  AYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNYHVRMDT 747

Query: 735  LSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLV 794
            L+H LFYP +PL  T   +            L   EL  G N+IVA+  + GYNQEDS++
Sbjct: 748  LAHVLFYPHKPLVITRSME-----------YLRFRELPAGINSIVAILCYTGYNQEDSVI 796

Query: 795  MNRASLERGMFRSEHIRSYK----AEVDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDS 847
            +N +++ERG FRS   RSYK      + ++E Q +   R++   M N           D 
Sbjct: 797  LNASAVERGYFRSVFYRSYKDSESKRIGDQEEQFEKPNRQTCQGMRN--------AMYDK 848

Query: 848  LDDDGFPFIGANLQSGDIVIGKYAD--------SGA-------DHSIKLKHTERGMVQKV 892
            LDDDG    G  +   D++IGK            GA       D S  L+++E G V +V
Sbjct: 849  LDDDGIIAPGVRVSGDDVIIGKTITLPDNDDELEGATKRYTKRDASTFLRNSETGCVDQV 908

Query: 893  VLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVI 952
            +++ N +G  F  + +R VR P +GDKF+S HGQKG  G    QE+ PFT +G+ PDI+I
Sbjct: 909  MITLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIII 968

Query: 953  NPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFS 1011
            NPHA PSR T G L+E   GK   +  KG        ATPF    +V  I+  L   G+ 
Sbjct: 969  NPHAIPSRMTIGHLIECLQGK--VSSNKGEIGD----ATPFNDAVNVQKISTLLQEYGYQ 1022

Query: 1012 KWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRF 1071
              G E +Y+G TG  + + +F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R 
Sbjct: 1023 LRGNELMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARD 1082

Query: 1072 GGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKV 1129
            GG++FGEMERDC I+HGAA  L ERLF +SD Y++H+C  C    +AN+           
Sbjct: 1083 GGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE----- 1137

Query: 1130 RGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
                C+ C +   I +  +PY AKLL QEL SM I  + 
Sbjct: 1138 ----CKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRL 1172


>gi|324120656|dbj|BAJ78719.1| RNA polymerase II second largest subunit [Metylophorus sp. E-43]
          Length = 1176

 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 414/1226 (33%), Positives = 626/1226 (51%), Gaps = 140/1226 (11%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSK 75
            ++  E  +  C     S+F+E GLV  Q++S++EFI+  +Q+  +   +  ++     ++
Sbjct: 15   EISSELWQEACWIVINSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQA---EAQ 71

Query: 76   KGEGEWRYAS---MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQ 132
               GE  +     ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +   
Sbjct: 72   HTSGEIEHPPHYLLKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLTYSAPLYVDI--- 127

Query: 133  VYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKG 186
                   T    K G      +E +  +     IG+IP+M++S  C + G+      E  
Sbjct: 128  -------TKTIVKEG------EEPIETQHQKSFIGKIPIMLRSTYCLLSGLTDRDLTELN 174

Query: 187  DCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIV 239
            +C  D GGYFII G+EKV +AQE++    ++V +      AYK+E       + R    +
Sbjct: 175  ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKTEIRSCLEHSSRPTSTL 234

Query: 240  RLVDMSKF-EDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDC 294
             +  M++  + IK    G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D 
Sbjct: 235  WVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDP 294

Query: 295  SILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTE 340
             ++ ++  S+ +A      N    F   R A         +KY  ++++    P    ++
Sbjct: 295  EMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSD 354

Query: 341  ECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLEREL 400
             C             +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL    
Sbjct: 355  FC-----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLF 403

Query: 401  KVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERI 460
            +    +  K +    Q+ +   +    +E  +   I+T+GL  + +TG W    K  +  
Sbjct: 404  RGLFKNLMKEVRMFAQKFIDRGKDFN-LELAIKTKIITDGLRYSLATGNWGDQKKAHQAR 462

Query: 461  SGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLV 520
            +G+   L R     TL  LRR    +   GK+   R  H + WG IC   TP+G   GLV
Sbjct: 463  AGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLV 522

Query: 521  KNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSF 579
            KNL +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    
Sbjct: 523  KNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQL 582

Query: 580  VSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKI 629
            ++ LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VEN         +  +
Sbjct: 583  MATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGQLLLKRNHVNML 642

Query: 630  KSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPI--KFTHCELDM 687
            K  E  NY +Q L+  G++E + T EEE    A  +  L    E +       THCE+  
Sbjct: 643  KEREFNNYGWQVLVASGVVEYIDTLEEETVMIAMNLDDLRGGQEKEYAYCSTHTHCEIHP 702

Query: 688  SFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLF 747
            + +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H LFYP +PL 
Sbjct: 703  AMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNYHVRMDTLAHVLFYPHKPLV 761

Query: 748  RTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRS 807
             T   +            L   EL  G N+IVA+  + GYNQEDS+++N +++ERG FRS
Sbjct: 762  TTRSME-----------YLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRS 810

Query: 808  EHIRSYK----AEVDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANL 860
               RSYK      + ++E Q +   R++   M N           D LDDDG    G  +
Sbjct: 811  CFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMRN--------AMYDKLDDDGIITPGVRV 862

Query: 861  QSGDIVIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSV 905
               D+VIGK                  +  D S  L+++E G V +V+L+ N +G  F  
Sbjct: 863  SGDDVVIGKTITLPDTDDDLEGTTRRFTKRDASTFLRNSETGCVDQVMLTLNAEGYKFCK 922

Query: 906  VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 965
            + +R VR P +GDKF+S HGQKG  G    QE+ PFT +G+ PDI+INPHA PSR T G 
Sbjct: 923  IRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGH 982

Query: 966  LLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTG 1024
            L+E   GK   +  KG        ATPF    +V  I+  L   G+   G E +Y+G TG
Sbjct: 983  LIECLQGK--VSANKGEIGD----ATPFNDAVNVQKISTLLQEYGYHLRGNELMYNGHTG 1036

Query: 1025 EMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL 1084
              + + +F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC 
Sbjct: 1037 RKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQ 1096

Query: 1085 IAHGAAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDD 1142
            I+HGAA  L ERLF +SD Y++H+C  C    +AN+               C+ C +   
Sbjct: 1097 ISHGAAQFLRERLFEVSDPYRIHVCNLCGLIAIANLRNNTFE---------CKGCKNKTQ 1147

Query: 1143 IVKANVPYGAKLLCQELFSMGITLKF 1168
            I +  +PY AKLL QEL SM I  + 
Sbjct: 1148 ISQVRLPYAAKLLFQELMSMNIAPRL 1173


>gi|449270676|gb|EMC81333.1| DNA-directed RNA polymerase II subunit RPB2, partial [Columba livia]
          Length = 1168

 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 424/1234 (34%), Positives = 620/1234 (50%), Gaps = 146/1234 (11%)

Query: 2    DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-D 60
            D DD+  T      DL +E     C     S+F+E GLV  Q++S++EFI+  +Q+   D
Sbjct: 5    DEDDDEITP-----DLWQEA----CWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 55

Query: 61   SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
            +    +       + + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+T
Sbjct: 56   APPIDLQAEAQHATGEVEEPPRYL-LKFEQIYLSKPTHWERDGAPS-PMMPNEARLRNLT 113

Query: 121  YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
            YS+ + V +          T    K G +Q      L  +     IG+IP+M++S  C +
Sbjct: 114  YSAPLYVDI----------TKTVIKEGEDQ------LQTQHQKTFIGKIPIMLRSTYCLL 157

Query: 181  KGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR 234
             G+      E  +C  D GGYFII G+EKV +AQE++    ++V        AY  E + 
Sbjct: 158  NGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRS 217

Query: 235  N-------------RLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDK 281
                           ++ R    +K   I G   V ++ ++  E+PI I+F ALG  SD+
Sbjct: 218  CLENSSRPTSTIWVSMLARGGQGAKKSAI-GQRIVATLPYIKQEVPIIIVFRALGFVSDR 276

Query: 282  EIVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKL 327
            +I+  I +  ED  ++ ++  S+ +A      N    F   R A         +KY  ++
Sbjct: 277  DILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEV 336

Query: 328  IKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNK 387
            ++    P    ++ C             +KA FLGYMV  LL A  GRR+ D+RD + NK
Sbjct: 337  LQKEMLPHVGVSDFC-----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNK 385

Query: 388  RLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFST 447
            RL+LAG LL    +    +  K +    Q+ +   +    +E  +   I+++GL  + +T
Sbjct: 386  RLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFN-LELAIKTRIISDGLKYSLAT 444

Query: 448  GAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKIC 507
            G W    K  +  +G+   L R     TL  LRR    +   GK+   R  H + WG +C
Sbjct: 445  GNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVC 504

Query: 508  FLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVD 566
               TP+G   GLVKNL +   +S  S   PI E L    ME L + +  ++    K+FV+
Sbjct: 505  PAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVN 564

Query: 567  GDWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVE- 624
            G W+G+ KD    ++ LR+ RR+ ++  ++V + RD  + E+RI+ DAGRI RPLL+VE 
Sbjct: 565  GCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEK 624

Query: 625  --------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKK 676
                    ++ ++K  E  NY++Q L+  G++E + T EEE    A        D+++K 
Sbjct: 625  QKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD----DLQEKG 680

Query: 677  PI---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVD 733
                  +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+D
Sbjct: 681  VAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMD 739

Query: 734  TLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSL 793
            TL+H L+YPQ+PL  T   +            L   EL  G N+IVA+  + GYNQEDS+
Sbjct: 740  TLAHVLYYPQKPLVTTRSME-----------YLRFRELPAGINSIVAIASYTGYNQEDSV 788

Query: 794  VMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGR------VDS 847
            +MNR++++RG FRS   RSYK        Q  ++  D    F K   +  +       D 
Sbjct: 789  IMNRSAVDRGFFRSVFYRSYKE-------QESKKGYDQEEVFEKPTRETCQGMRHAIYDK 841

Query: 848  LDDDGFPFIGANLQSGDIVIGKYAD---------------SGADHSIKLKHTERGMVQKV 892
            LDDDG    G  +   D++IGK                  +  D S  L+ +E G+V +V
Sbjct: 842  LDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRFTKRDCSTFLRTSETGIVDQV 901

Query: 893  VLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVI 952
            +++ N +G  F  + +R VR P +GDKF+S HGQKG  G    QE+ PFT +GI PDI+I
Sbjct: 902  MVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIII 961

Query: 953  NPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFS 1011
            NPHA PSR T G L+E   GK   +  KG        ATPF    +V  I+  L   G+ 
Sbjct: 962  NPHAIPSRMTIGHLIECLQGK--VSANKGEIGD----ATPFNDAVNVQKISNLLSDYGYH 1015

Query: 1012 KWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRF 1071
              G E LY+G TG  + S IFIGPT+YQRL HM +DK+  R  GP+  L RQP+  R R 
Sbjct: 1016 LRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRD 1075

Query: 1072 GGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRG 1131
            GG++FGEMERDC IAHGAA  L ERLF  SD YQ+H+C  C  +A           +   
Sbjct: 1076 GGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAI-------ANTRTHT 1128

Query: 1132 PYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
              CR C +   I    +PY  KLL QEL SM I 
Sbjct: 1129 YECRGCRNKTQISLVRMPYACKLLFQELMSMSIA 1162


>gi|324120658|dbj|BAJ78720.1| RNA polymerase II second largest subunit [Neocolochelyna itoi]
          Length = 1175

 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 414/1229 (33%), Positives = 630/1229 (51%), Gaps = 148/1229 (12%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPS 74
            ++  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S
Sbjct: 16   EISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTS 75

Query: 75   KKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVY 134
             + E   R+  ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +     
Sbjct: 76   GEIENPVRHL-LKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLTYSAPLYVDIT---- 129

Query: 135  TQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDC 188
              K +  D           ++ +  +     IG+IP+M++S  C + G+      E  +C
Sbjct: 130  --KTIVKDA----------EDPVETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNEC 177

Query: 189  DFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR---------NRLIV 239
              D GGYFII G+EKV +AQE++    ++V +      AYK+E +          + L V
Sbjct: 178  PLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKAEIRSCLEHSSRPTSTLWV 237

Query: 240  RLVDMSKFEDIKG--GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
             ++  S     K   G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  +
Sbjct: 238  NMMAKSGASIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 297

Query: 297  LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
            + ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C
Sbjct: 298  MEMVKPSLDEAFVIQEQNVALNFIGTRGARPGVTKEKRIKYAREILQKEMLPHVGISDFC 357

Query: 343  MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                         +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL      
Sbjct: 358  -----------ETKKAYFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLL------ 400

Query: 403  HIAHARKRMAKALQRD--LYGDRTVR-----PIEYYLDASILTNGLSRAFSTGAWSHPFK 455
              A   + + K L ++  LY  + +       +E  +   I+T+GL  + +TG W    K
Sbjct: 401  --AFLFRGLFKNLMKEVRLYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 458

Query: 456  RTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGE 515
              +  +G+   L R     TL  LRR    +   GK+   R  H + WG +C   TP+G 
Sbjct: 459  AHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGA 518

Query: 516  NCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCK 574
              GLVKNL +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +
Sbjct: 519  AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 578

Query: 575  DSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVE--------- 624
            D    ++ LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VE         
Sbjct: 579  DPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVEGQNLLLKKR 638

Query: 625  NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCE 684
            ++  +K  +  NY +Q L+  G++E + T EEE    A   + L ++ E      +THCE
Sbjct: 639  HIDMLKERDYTNYGWQVLVASGVVEYIDTLEEETVMIAMSPEDLRQEKEYAYCTTYTHCE 698

Query: 685  LDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQR 744
            +  + +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +
Sbjct: 699  IHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHK 757

Query: 745  PLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGM 804
            PL  T   +            L   EL  G N+IVA+  + GYNQEDS+++N +++ERG 
Sbjct: 758  PLVTTRSME-----------YLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGF 806

Query: 805  FRSEHIRSYK----AEVDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIG 857
            FRS   RSYK      + ++E Q +   R++   M N           D LDDDG    G
Sbjct: 807  FRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMRN--------AIYDKLDDDGIIAPG 858

Query: 858  ANLQSGDIVIGKYA---------DSGA------DHSIKLKHTERGMVQKVVLSSNDDGKN 902
              +   D+VIGK           DS        D S  L+++E G+V +V+L+ N +G  
Sbjct: 859  IRVSGDDVVIGKTITLPETDDELDSATKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYK 918

Query: 903  FSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQT 962
            F  + +R VR P +GDKF+S HGQKG  G    QE+ PF+ +G+ PDI+INPHA PSR T
Sbjct: 919  FCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFSCEGLTPDIIINPHAIPSRMT 978

Query: 963  PGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDG 1021
             G L+E   GK   +  KG        ATPF    +V  I+  L   G+   G E +Y+G
Sbjct: 979  IGHLIECIQGK--VSANKGEIGD----ATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNG 1032

Query: 1022 RTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMER 1081
             TG  + + +F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMER
Sbjct: 1033 HTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMER 1092

Query: 1082 DCLIAHGAAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDS 1139
            DC I+HGAA  L ERLF +SD Y++HIC  C    +AN+               C+ C +
Sbjct: 1093 DCQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRNNTFE---------CKGCKN 1143

Query: 1140 GDDIVKANVPYGAKLLCQELFSMGITLKF 1168
               I +  +PY AKLL QEL +M I  + 
Sbjct: 1144 KTQISQIRLPYAAKLLFQELMAMNIAPRL 1172


>gi|162606010|ref|XP_001713520.1| DNA-directed RNA polymerase II second largest subunit [Guillardia
            theta]
 gi|13794440|gb|AAK39815.1|AF165818_23 DNA-directed RNA polymerase II second largest subunit [Guillardia
            theta]
          Length = 1206

 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 411/1239 (33%), Positives = 628/1239 (50%), Gaps = 158/1239 (12%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
            FF + GLV  QINS+N FI+N +Q   D      V    DP            +R GQ+ 
Sbjct: 18   FFIQKGLVDQQINSFNNFIQNTMQDIIDDMPPITVYIDNDPGNDDLLSKIRMVIRLGQLH 77

Query: 93   LDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYI 152
            L KP++   +G   H++ P  ARL+N+TYSS +  ++   +   ++            YI
Sbjct: 78   LSKPTYIEDDGL-VHNLVPNEARLRNLTYSSPLYCEISTSIIKNEKSID---------YI 127

Query: 153  QKEVLSDETTNIIIGRIPVMVKSDLCWMKGVE------KGDCDFDHGGYFIIKGAEKVFV 206
             K+     +  I+IGRIP+M+KS  C +  ++       G+C  D GGYFI+ G+EKV V
Sbjct: 128  LKQF----SEKILIGRIPIMIKSKFCILSNLDIKCLKNLGECPDDPGGYFIVNGSEKVIV 183

Query: 207  AQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVR---------------LVDMSKFED-- 249
            AQEQ+   ++++          K+EN RN + ++               + D SK+    
Sbjct: 184  AQEQLSWNKVYIFQ--------KNENLRNTIKIKNYTVEGYLYFAECRSVADYSKWSPSL 235

Query: 250  ------------------------------IKGGEKV-LSVYFLSTEIPIWILFFALGVS 278
                                          + GG  + + + +   +IPI  +F ALG  
Sbjct: 236  LTVKVCLCPYKDQKFSIFKKNLKFNSPEIFLSGGFYLRMMLPYFKKDIPITWIFKALGFE 295

Query: 279  SDKEIVNLIDFTCEDCSILNILFASIHDADNKCDE-------FRKGRNALKYVDKLI-KG 330
            ++ EI++ I +  +D  +++I+   + D                    AL  + + + KG
Sbjct: 296  NEIEILDYICYDSQDEDLISIVRYIVEDDKISTQNSLSISCPILDQETALAAIGQHVSKG 355

Query: 331  TTFPPGESTEECMNTYLFPSLHGTKQ-----KARFLGYMVKCLLQAYSGRRKCDNRDDFR 385
                  +   E +     P + G  Q     K  F GY++  L+    G+RK D+RD + 
Sbjct: 356  PQGIRIKFAYEVLQKEFLPHI-GIGQGFELRKGYFFGYIINKLISTQIGKRKMDDRDHYG 414

Query: 386  NKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAF 445
             KRL+  G LL +  +  +    K     +Q+ ++       ++ +  ++ +T G+  A 
Sbjct: 415  YKRLDTVGPLLSQLFRQLLGKVLKEFKTNVQKKIHRLDKKFELKDFFKSNYVTTGIQYAL 474

Query: 446  STGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGK 505
            STG W    K++ R +GI   L R +   TL  LRR         K+   R+ H SHWG 
Sbjct: 475  STGNWGTD-KQSLR-TGISQVLNRLSYSSTLSHLRRVNSPSAKGNKITKPRHLHNSHWGY 532

Query: 506  ICFLSTPDGENCGLVKNLGVTGLVSTSILEPIF--EQLFNSGMEKLADDASYSLGGKFKV 563
            IC + TP+G +CGLVKNL +T +++     P+F  E+L N G+E L +  S  L   FKV
Sbjct: 533  ICPVETPEGHSCGLVKNLALTAMITIGT-SPLFIIEKLENLGLESLEEYNSDKLKSSFKV 591

Query: 564  FVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVV 623
            FV+G WIG  K+  + +S+++  RRR     ++ I  D+   E++IF D+GR++RPLL++
Sbjct: 592  FVNGCWIGTHKNPFALISKMKIYRRRNIFSEEISIILDDYDKEIKIFSDSGRVIRPLLII 651

Query: 624  ENMGKIKSLEGKNY------------TFQALLDHGIIELVGTEEEEDCCTA--WGIKYLL 669
                 IK    + Y             FQ LL+ GI+E V  EEEE C  +  +  KYL 
Sbjct: 652  NEENIIKINNKQKYLHNLTDDQSIYSNFQQLLEEGILEYVDPEEEETCLISMFYNFKYL- 710

Query: 670  KDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPS 729
            K++  +K IK+THCEL  S +LG+   +IPF +H+ + R  YQ+     QAIG   +N  
Sbjct: 711  KNLHTQK-IKYTHCELHPSVILGVCASLIPFCDHNQSPRNTYQAA-MGKQAIGINVSNYD 768

Query: 730  IRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQ 789
             R+DT+ H L+YPQ+PL  T              + +   +  NG NAIVA+  + GYNQ
Sbjct: 769  FRMDTMCHILYYPQKPLVCT-----------KSMNFIKFKDFPNGINAIVAIACYGGYNQ 817

Query: 790  EDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQS-KIGRVDSL 848
            EDS++M++ S++RG+FRS   R+YK +V+  +   K+ + + + N+      KI   + L
Sbjct: 818  EDSIIMSQDSIDRGLFRSFFFRNYK-DVEKIKFGGKKETFE-IPNWKSCNGIKIHSYEKL 875

Query: 849  DDDGFPFIGANLQSGDIVIGKYADSG-------------------ADHSIKLKHTERGMV 889
            D DG    G  + S DI+IGK   +                     D S  +K+ E G+V
Sbjct: 876  DLDGLIGEGKKVNSNDIIIGKTCPTNLFDNNNEDLRLLGKNLKIKTDCSSSIKNFETGVV 935

Query: 890  QKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPD 949
             KV+L+ +D+G     + +R VR P +GDKF+S HGQKG++G +  Q N PF+ QGI PD
Sbjct: 936  DKVILAKSDEGFRLVKIRIRSVRLPQIGDKFASRHGQKGIIGMIYRQVNMPFSEQGISPD 995

Query: 950  IVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAG 1009
            I++NPHA PSR T G LLE  L K ++        G++   TPF   +++ I   L +  
Sbjct: 996  IIMNPHAIPSRMTIGHLLECLLSKAVSM------KGIEGDGTPFERQNMEDIMNFLEKNN 1049

Query: 1010 FSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRK 1069
            F K G E LY+G  G+ ++SLIF+GPT+YQ+L HM EDK+  R  GP+  LTRQPV  R 
Sbjct: 1050 FDKNGWEILYNGFNGKRIKSLIFMGPTYYQKLKHMVEDKIHSRARGPIQILTRQPVEGRS 1109

Query: 1070 RFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKV 1129
            R GG++FGEMERDC+I+HGAA  L +RLF  SD + +++C  C         +V   +K 
Sbjct: 1110 REGGLRFGEMERDCMISHGAAIFLKDRLFDQSDPFGIYVCDFCG-------FIVVSNKKQ 1162

Query: 1130 RGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
                CR C +   I    +PY  KLL QEL S+ + ++ 
Sbjct: 1163 NNFECRNCSNRSMISFIRIPYAFKLLIQELMSLSVGVRL 1201


>gi|449302981|gb|EMC98989.1| hypothetical protein BAUCODRAFT_65631 [Baudoinia compniacensis UAMH
            10762]
          Length = 1254

 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 424/1273 (33%), Positives = 644/1273 (50%), Gaps = 171/1273 (13%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEG------ 79
            C     SFF   GLVS Q++S++EF    +Q+         V+    P   G G      
Sbjct: 19   CWTVIQSFFESKGLVSQQLDSFDEFAATTMQEIISETETIAVDRNLSPEDDGHGATIVKK 78

Query: 80   EWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT---- 135
             W+   + FG+ T+ + +   G+G     +FP  ARL+N+TY+S + ++++ +V      
Sbjct: 79   RWQ---IEFGKATISQAAMTEGDGVT-RALFPHEARLRNLTYASPIYLEMKKRVMIAKEK 134

Query: 136  ---------QKRVTSDKFKTGRE--QYIQKEVL------SDETTNIIIGRIPVMVKSDLC 178
                     Q+R  + +   G+E   + Q++        +D  T + IG++PVM+KS +C
Sbjct: 135  PAGSYWDEEQERWEAPEEWDGQEYETFWQRDPEDEASPDADTATKVFIGKLPVMLKSKIC 194

Query: 179  WMKGVEKGD------CDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE- 231
             ++   + +      C FD GGYFII G+EKV +AQE+     + V    G      +E 
Sbjct: 195  TLRNRSEQELYAFQECPFDQGGYFIINGSEKVLIAQERSAANIVQVFKKRGSPTPVVAEI 254

Query: 232  ----NKRNRLIVRLVDMSKFEDIKG---GEKV-LSVYFLSTEIPIWILFFALGVSSDKEI 283
                 K +RLI  ++ +  +E   G   G+ V  ++ ++ ++IP+  +F ALG+ SD++I
Sbjct: 255  RSAIEKGSRLISTMM-VKLYERTSGTNLGKTVKATLPYIKSDIPLVAVFRALGIVSDEDI 313

Query: 284  VNLIDFTC--EDCSILNIL------FASIHDADNKCDEFRKGRNALKYVDKLIK------ 329
            +  I   C  +D  +L +L       A+I + +   D   +  N     +K IK      
Sbjct: 314  LLHI---CKRDDTQMLEMLKPCLEEAAAIQEREQALDFIGRRGNFAGTREKRIKFARDVM 370

Query: 330  GTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRL 389
               F P  S EE   T          +KA FLGYMV  LLQ   GR + D+RD F  KRL
Sbjct: 371  QKEFLPHISQEEGSET----------RKAFFLGYMVNRLLQVQLGRVEEDDRDHFGKKRL 420

Query: 390  ELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGA 449
            +LAG L+ +  ++  +   K +   L R +   R    I   + ++I+T+GL  + +TG 
Sbjct: 421  DLAGPLMAQVFRLKFSQLVKDIRNYLHRCVEQGREFN-INLAVKSNIITSGLRYSLATGN 479

Query: 450  WSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFL 509
            W    K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C  
Sbjct: 480  WGDQKKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPA 539

Query: 510  STPDGENCGLVKNLGVTGLVSTSIL-EPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGD 568
             TP+G+ CGLVKNL +   VS      P+ E + + GME L +  +       KVF++G 
Sbjct: 540  ETPEGQACGLVKNLALMCYVSVGTPGTPLIEYMRHRGMELLEEYDAVMNPNATKVFLNGT 599

Query: 569  WIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK 628
            W+GV          L+  RR++ +  +V I RD  + E+++F DAGR++RPL V++N   
Sbjct: 600  WVGVHSSGHQLTEALKELRRKEVIGFEVTIIRDVREREIKVFTDAGRVMRPLFVIDNNPN 659

Query: 629  -----------------------IKSLEGKN----------YTFQALLDHGIIELVGTEE 655
                                   I SLEG++          + +  L+ +G+IE +  EE
Sbjct: 660  SPNRGNLVLSREQVEKLSNDQKIIGSLEGQSVSEQQKAELTFGWHGLVKNGVIEYLDAEE 719

Query: 656  EE--------DCCTAWGIKYLLKD-IEDK---------KPIK----FTHCELDMSFLLGL 693
            EE        D      +  L +D +E K         KP K    +THCE+  + +LG+
Sbjct: 720  EETAMIMMTPDDLEEHKLARLGEDWVEAKEDPHRRIKAKPNKQVRMWTHCEIHPAMILGI 779

Query: 694  SCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISD 753
               IIPF +H+ + R  YQS     QA+G   TN  IR+DT+++ L+YPQ+PL  T   +
Sbjct: 780  CASIIPFPDHNQSPRNTYQS-AMGKQAMGVTLTNFGIRMDTMANVLYYPQKPLATTRSME 838

Query: 754  CLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSY 813
                        L   +L  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y
Sbjct: 839  -----------FLKFRDLPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAY 887

Query: 814  KAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADS 873
              +     M V  +  +  V    ++ K G  D LDDDG    G+ +   DI+IGK A  
Sbjct: 888  MDQEKRVGMSVVEQF-EKPVRSDTLKMKGGTYDKLDDDGIISPGSRVSGEDIIIGKTAPI 946

Query: 874  GADH---------------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGD 918
              D                S  L+ TE G+V +V+L++N +G  F  V  R  + P +GD
Sbjct: 947  APDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNTEGLKFVKVRTRTTKVPQIGD 1006

Query: 919  KFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAL 978
            KF+S HGQKG +G    QE+ PFT  G+ PDI+INPHA PSR T   L+E  L K     
Sbjct: 1007 KFASRHGQKGTIGITYRQEDMPFTADGLTPDIIINPHAIPSRMTIAHLIECLLSK----- 1061

Query: 979  GKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFY 1038
              G  +G +  ATPF   ++ +I+  L   GF + G E +Y+G TG+ + + +F+GPT+Y
Sbjct: 1062 -VGALTGQEGDATPFTDVTLTSISTLLEEHGFQRRGFEVMYNGHTGKKLNAQVFLGPTYY 1120

Query: 1039 QRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLF 1098
            QRL HM +DK+  R  GP+  LTRQPV  R R GG++FGEMERDC+IAHGA+A L ERL 
Sbjct: 1121 QRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLL 1180

Query: 1099 TLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQE 1158
             +SD++++HIC  C  +  + +       K +   CR C + + I +  +PY AKLL QE
Sbjct: 1181 DVSDAFRVHICEICGLMTPIAK------LKEKTIECRQCRNKNRIAQVIIPYAAKLLFQE 1234

Query: 1159 LFSMGITLKFDTE 1171
            L +M +  +  T+
Sbjct: 1235 LAAMNVATRMFTD 1247


>gi|170591608|ref|XP_001900562.1| DNA-directed RNA polymerase II second largest subunit [Brugia malayi]
 gi|158592174|gb|EDP30776.1| DNA-directed RNA polymerase II second largest subunit, putative
            [Brugia malayi]
          Length = 1185

 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 406/1227 (33%), Positives = 626/1227 (51%), Gaps = 138/1227 (11%)

Query: 17   LGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPSK 75
            +  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S 
Sbjct: 19   ISSEQWQEACWVVISAYFDEKGLVRQQLDSFDEFIQMNVQRIVEDSPPVELQSEVQHFSG 78

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT 135
              E   ++A ++F Q+ L KP+ +  +G     M P  ARL+N+TYSS + + +     T
Sbjct: 79   DVENPIKFA-LKFDQIYLSKPTHWEKDGAPT-PMMPNEARLRNLTYSSPLYIDI---TKT 133

Query: 136  QKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCD 189
              R   +  +T  E+             + +G+IP+M++S  C +  +      E  +C 
Sbjct: 134  MTRSGEEPKETKYEK-------------VFVGKIPIMLRSSYCMLANMSDRDLSELNECP 180

Query: 190  FDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENK----RNRLIVRLVDMS 245
             D GGYF+I G+EKV +AQE++    ++V +       YK+E +     +R +++   +S
Sbjct: 181  LDPGGYFVINGSEKVLIAQEKMATNTVYVFSMKDGKYTYKTECRSCLENSRQVLKQYFLS 240

Query: 246  KFEDIKG---------------------GEKVLSVY-FLSTEIPIWILFFALGVSSDKEI 283
              E  +                      G K++++  ++  EIP+ I+F ALG  SD +I
Sbjct: 241  ILEVTRPTSTLWVNMLPRGGGGSKKSAMGPKIIAILPYIKQEIPVMIVFRALGFVSDHDI 300

Query: 284  VNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIK 329
            +  I +  ED  ++ ++  S+ +A      N    F   R A         +KY  ++++
Sbjct: 301  LEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGAKPGVTKEQRIKYAREILQ 360

Query: 330  GTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRL 389
                P    ++ C             +KA FLGYMV  LL A  GRR+ D+RD   NKRL
Sbjct: 361  KEMLPHVGISDFC-----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHMGNKRL 409

Query: 390  ELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGA 449
            +LAG LL    +    +  K +    Q+ +  +     ++  +   ++T GL+ + +TG 
Sbjct: 410  DLAGPLLAFLFRALFRNLLKEVRLTAQKYINKNGDFM-LDLCVKTPLITRGLAYSLATGN 468

Query: 450  WSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFL 509
            W    K  +  +G+   L R     TL  LRR    +   GK+   R  H + WG +C  
Sbjct: 469  WGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRCNSPIGREGKLAKPRQLHNTQWGMVCPA 528

Query: 510  STPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGD 568
             TP+G+  GLVKNL +   +S  S+ EPI E L    ME L + A  ++    K+FV+G 
Sbjct: 529  ETPEGQAVGLVKNLALMAYISVGSLPEPILEFLEEWSMENLEEVAPTAIADATKIFVNGA 588

Query: 569  WIGVCKDSLSFVSELRRKRRRKE-LPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENM- 626
            W+G+ +D    ++ L++ RR  + + ++V + RD    E+RI+ DAGR+ RPLL+VEN  
Sbjct: 589  WVGIHRDPEQLMTTLKKLRREMDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVENQK 648

Query: 627  -----GKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPI-KF 680
                   I  L+  +YT+  L+  G++EL+   EEE    A     + +D++       +
Sbjct: 649  LALKRKHIDQLKDNSYTWSELVAGGVVELIDAMEEETVMLAM----MPEDLKAGGYCDTY 704

Query: 681  THCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLF 740
            THCE+  + +LG+   IIPF +H+ + R  YQS     QA+G  TTN  +R+DTL+H L+
Sbjct: 705  THCEIHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYTTNFHVRMDTLAHVLY 763

Query: 741  YPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASL 800
            YPQ+PL  T   +            L   EL  G NAIVA+  + GYNQEDS++MN++ +
Sbjct: 764  YPQKPLVTTRSME-----------YLRFNELPAGINAIVAILSYTGYNQEDSIIMNQSGI 812

Query: 801  ERGMFRSEHIRSYK---AEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIG 857
            +RG+FRS   RSY+   A +DN   ++  + + D  +      +    D LD+DG    G
Sbjct: 813  DRGLFRSVFYRSYRDQEANLDNANEELIEKPTRDKCS----GMRHSLYDKLDEDGIISPG 868

Query: 858  ANLQSGDIVIGKY-----ADSGADHSIK----------LKHTERGMVQKVVLSSNDDGKN 902
              +   D++IGK       +   D +IK          L+ +E G+V +V+L+ N DG  
Sbjct: 869  MRVSGDDVIIGKTISLPDTEDDLDAAIKRYTKKDASTFLRSSETGIVDQVMLTLNTDGNK 928

Query: 903  FSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQT 962
            F  + +R VR P +GDKF+S HGQKG +G +  QE+ PFT +GI PDI+INPHA PSR T
Sbjct: 929  FVKIRVRSVRLPQIGDKFASRHGQKGTMGMMYRQEDMPFTNEGITPDIIINPHAVPSRMT 988

Query: 963  PGQLLEAALGKGIAALGKGICSGLKRYATPFA-TPSVDAITEQLHRAGFSKWGTERLYDG 1021
             G L+E   GK  A   KG        ATPF  T +V  I+  L   G+   G E +Y+G
Sbjct: 989  IGHLIECLQGKLSA--NKGEIGD----ATPFNDTVNVQKISNLLQEYGYHLRGNEIMYNG 1042

Query: 1022 RTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMER 1081
             TG  +   +F+GPT+YQRL HM +DK+  R  GPV  + RQP+  R R GG++FGEMER
Sbjct: 1043 HTGRKLTIQVFLGPTYYQRLKHMVDDKIHSRARGPVQMMNRQPMEGRARDGGLRFGEMER 1102

Query: 1082 DCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGD 1141
            DC I+HGAA  L ERLF +SD Y ++IC  C         +V    +     C+ C +  
Sbjct: 1103 DCQISHGAAQFLRERLFEVSDPYHVYICNNCG-------LIVVANLRTNSFECKACRNKT 1155

Query: 1142 DIVKANVPYGAKLLCQELFSMGITLKF 1168
             +    +PY  KLL QEL SM I  + 
Sbjct: 1156 QVSAFRIPYACKLLFQELMSMSIAPRL 1182


>gi|156538773|ref|XP_001607902.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Nasonia
            vitripennis]
          Length = 1175

 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 411/1229 (33%), Positives = 627/1229 (51%), Gaps = 148/1229 (12%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSK 75
            ++  +  +  C     ++F+E GLV  Q++S++EFI+  +Q+        IVE       
Sbjct: 16   EISSKVWQEACWIVINAYFDEKGLVRQQLDSFDEFIEMSVQR--------IVEESPQIDL 67

Query: 76   KGEGEWRYASM--------RFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKV 127
            + E + R   +        +F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V
Sbjct: 68   QAEAQHRTGDIETPTRHLVKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLTYSAPLYV 126

Query: 128  KVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV---- 183
             +          T    K G      +E    +     IG+IP+M++S  C + G+    
Sbjct: 127  DI----------TKTVIKEG------EEPTETQHQKTFIGKIPIMLRSKYCLLAGLSDRD 170

Query: 184  --EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR------- 234
              E  +C  D GGYFII G+EKV +AQE++    ++V +      AYK+E +        
Sbjct: 171  LTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSIKDGKYAYKAEIRSCLEHSSR 230

Query: 235  --NRLIVRLVDMSKFEDIKG--GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDF 289
              + L + ++  S     K   G++++++  ++  EIPI I+F ALG  +D++I+  I +
Sbjct: 231  PVSTLWINMMSKSGAAIKKSAIGQRIIAILPYIRQEIPIMIVFRALGFVADRDILEHIIY 290

Query: 290  TCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPP 335
              +D  ++ ++  S+ +A      N    F   R A         +KY  ++++  T P 
Sbjct: 291  DFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGARPGVTKERRIKYAREILQKETLPH 350

Query: 336  GESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGEL 395
               ++ C             +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG L
Sbjct: 351  VGVSDFC-----------ETKKAYFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPL 399

Query: 396  LERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFK 455
            L    +    +  K +    Q+ +   +    +E  +   I+T+GL  + +TG W    K
Sbjct: 400  LAFLFRGLFKNLMKEVRMYAQKFIDRGKDFN-LELAIKTKIITDGLRYSLATGNWGDQKK 458

Query: 456  RTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGE 515
              +  +G+   L R     TL  LRR    +   GK+   R  H + WG +C   TP+G+
Sbjct: 459  AHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLARPRQLHNTLWGMLCPAETPEGQ 518

Query: 516  NCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCK 574
              GLVKNL +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +
Sbjct: 519  AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 578

Query: 575  DSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVENM------G 627
            D    ++ LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VEN        
Sbjct: 579  DPDQLMATLRKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRISRPLLIVENQLLLLKKR 638

Query: 628  KIKSLEGKNYT---FQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCE 684
             I+ L+ ++Y    +Q L+  G++E + T EEE    A   + L ++ E      +THCE
Sbjct: 639  HIEMLKERDYNNDGWQELVSQGVVEYIDTLEEETVMIAMSPEDLRQEKEYAYCTTYTHCE 698

Query: 685  LDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQR 744
            +  + +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +
Sbjct: 699  IHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHK 757

Query: 745  PLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGM 804
            PL  T   +            L   EL  G N+IVA+  + GYNQEDS+++N +++ERG 
Sbjct: 758  PLVTTRSME-----------YLRFRELPAGINSIVAILCYTGYNQEDSIILNTSAVERGF 806

Query: 805  FRSEHIRSYK-------AEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIG 857
            FRS   RSYK        +V+ +  +  R++   M N           D LD+DG    G
Sbjct: 807  FRSVFYRSYKDSETKRLGDVEEQFEKPNRQTCQGMRN--------AIYDKLDEDGIISPG 858

Query: 858  ANLQSGDIVIGKY-----ADSGADHSIK----------LKHTERGMVQKVVLSSNDDGKN 902
              +   D++IGK       D   D S K          L+++E G+V +V+L+ N +G  
Sbjct: 859  IRVSGDDVIIGKTMTLPETDDDLDSSTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYK 918

Query: 903  FSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQT 962
            F  + +R VR P +GDKF+S HGQKG  G    QE+ PFT +G+ PDI+INPHA PSR T
Sbjct: 919  FCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGMTPDIIINPHAIPSRMT 978

Query: 963  PGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDG 1021
             G L+E   GK   +  KG        ATPF    +V  I+  L   G+   G E +Y+G
Sbjct: 979  IGHLIECIQGK--VSANKGEIGD----ATPFNDAVNVQKISTLLMEYGYQLRGNEIMYNG 1032

Query: 1022 RTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMER 1081
             TG  + + +F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMER
Sbjct: 1033 HTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMER 1092

Query: 1082 DCLIAHGAAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDS 1139
            DC I+HGAA  L ERLF +SD Y++H+C  C    +AN+               C+ C +
Sbjct: 1093 DCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---------CKGCKN 1143

Query: 1140 GDDIVKANVPYGAKLLCQELFSMGITLKF 1168
               I +  +PY AKLL QEL SM I  + 
Sbjct: 1144 KTQISQVRLPYAAKLLFQELMSMNIAPRL 1172


>gi|194900689|ref|XP_001979888.1| GG16840 [Drosophila erecta]
 gi|190651591|gb|EDV48846.1| GG16840 [Drosophila erecta]
          Length = 1176

 Score =  617 bits (1592), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 415/1221 (33%), Positives = 626/1221 (51%), Gaps = 134/1221 (10%)

Query: 17   LGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPSK 75
            +  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S 
Sbjct: 18   ISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSG 77

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT 135
            + E   R+ S++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +     T
Sbjct: 78   EVETPPRF-SLKFEQIYLSKPTHWEKDGSPS-PMMPNEARLRNLTYSAPLYVDI---TKT 132

Query: 136  QKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCD 189
            +     D  +T  ++               IG+IP+M++S  C +  +      E  +C 
Sbjct: 133  KNVEGLDPVETQHQK-------------TFIGKIPIMLRSTYCLLSQLTDRDLTELNECP 179

Query: 190  FDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR---------NRLIVR 240
             D GGYFII G+EKV +AQE++    ++V +      A+K+E +          + L V 
Sbjct: 180  LDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVN 239

Query: 241  LVDMSKFEDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
            ++     ++IK    G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  +
Sbjct: 240  MMARGS-QNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 298

Query: 297  LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
            + ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C
Sbjct: 299  MEMVKPSLDEAFVVQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFC 358

Query: 343  MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                         +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL    + 
Sbjct: 359  -----------ETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRG 407

Query: 403  HIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISG 462
               +  K +    Q+ +   +    +E  +  +I+T+GL  + +TG W    K  +  +G
Sbjct: 408  LFKNLMKEVRMYTQKFIDRGKDFN-LELAIKTNIITDGLRYSLATGNWGDQKKAHQARAG 466

Query: 463  IVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKN 522
            +   L R     TL  LRR    +   GK+   R  H + WG +C   TP+G   GLVKN
Sbjct: 467  VSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKN 526

Query: 523  LGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVS 581
            L +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    ++
Sbjct: 527  LALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMA 586

Query: 582  ELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKS 631
             LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VEN         +  +K 
Sbjct: 587  TLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKE 646

Query: 632  LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLL 691
             +  NY++Q L+  G++E + T EEE    A     L +D +      +THCE+  + +L
Sbjct: 647  RDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMIL 706

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T  
Sbjct: 707  GVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRS 765

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
             +            L   EL  G N+IVA+  + GYNQEDS+++N +++ERG FRS   R
Sbjct: 766  ME-----------YLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYR 814

Query: 812  SYKAEVDNKEMQVKRRSSDDMVNFGKIQS------KIGRVDSLDDDGFPFIGANLQSGDI 865
            SYK + +NK      R  D   NF K         +    D LDDDG    G  +   D+
Sbjct: 815  SYK-DSENK------RVGDQEENFEKPNRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDV 867

Query: 866  VIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQ 910
            VIGK                  S  D S  L+++E G+V +V+L+ N +G  F  + +R 
Sbjct: 868  VIGKTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS 927

Query: 911  VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA 970
            VR P +GDKF+S HGQKG  G    QE+  FT +G+ PDI+INPHA PSR T G L+E  
Sbjct: 928  VRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECL 987

Query: 971  LGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRS 1029
             GK    LG     G    ATPF    +V  I+  L   G+   G E +Y+G TG  + +
Sbjct: 988  QGK----LGSN--KGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINA 1041

Query: 1030 LIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA 1089
             +F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC I+HGA
Sbjct: 1042 QVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGA 1101

Query: 1090 AANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKAN 1147
            A  L ERLF +SD Y++HIC  C    +AN+               C+ C +   I +  
Sbjct: 1102 AQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFE---------CKGCKNKTQISQVR 1152

Query: 1148 VPYGAKLLCQELFSMGITLKF 1168
            +PY AKLL QEL SM I  + 
Sbjct: 1153 LPYAAKLLFQELMSMNIAPRL 1173


>gi|402077539|gb|EJT72888.1| hypothetical protein GGTG_09739 [Gaeumannomyces graminis var. tritici
            R3-111a-1]
          Length = 1278

 Score =  617 bits (1592), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 431/1286 (33%), Positives = 637/1286 (49%), Gaps = 188/1286 (14%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEG----EW 81
            C     S+F+E GLVS QI+SYNEF    +Q   D +  T+     +P   G        
Sbjct: 34   CWTVISSYFDEKGLVSQQIDSYNEFTTTTIQSIIDEY-HTLTLDQQNPQDSGASGRPLRM 92

Query: 82   RYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTS 141
            R  ++ FG + + +P+    +G   + + P   R +N+TY+  + VK+  +V     V  
Sbjct: 93   RRYTLTFGHILVTQPTIKETDG-QANTLVPYECRDRNLTYACPLWVKLTRKVEAAVEVDI 151

Query: 142  DKFKTGREQYIQKEVLSDETTNII----------------------IGRIPVMVKSDLCW 179
             + K   EQ  +    ++  T ++                      IG+IP+M+KS +C+
Sbjct: 152  PEDKLTEEQKEEALATNEHPTTVVWVPEPVEEHSIEKNENMRDMVFIGKIPIMLKSRICY 211

Query: 180  MKGVEKGD------CDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE- 231
            ++   + +      C +D GGYFII G+EKV +AQE+     + V   +      Y++E 
Sbjct: 212  LRSQPESELFLLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKAQPHKYLYQAEI 271

Query: 232  ----NKRNRLIVRLVD--MSKFEDIKG--GEKV-LSVYFLSTEIPIWILFFALGVSSDKE 282
                 K +RLI  LV    SK +  +G  G+ + +++ +++ E+P+ I+F ALGV SD++
Sbjct: 272  RSALEKGSRLISSLVMSLTSKGDSSRGAFGQTLHVTLPYVNGELPLAIVFRALGVVSDED 331

Query: 283  IVNLIDFTCEDCSILNILFASIHDADNKCD-----EF------RKGRNA------LKYVD 325
            I+N I     D  +L +L  SI +A    D     +F      R G++A      L+   
Sbjct: 332  ILNHIVLDKGDVQMLEMLRPSIEEAFCIQDREVALDFIGKRVGRDGQHANNRHQRLRMAR 391

Query: 326  KLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFR 385
             +++  T P   S EE   T          +KA FLGYMV  +LQ   GRR  D+RD F 
Sbjct: 392  DILQKETLP-HVSQEEGQET----------RKAFFLGYMVHKILQCALGRRDVDDRDHFG 440

Query: 386  NKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAF 445
             KRL+LAG LL +  +  +      M   L+R +   R    +   L  + L+NGL  + 
Sbjct: 441  KKRLDLAGPLLAKLFRNLVRRMSNDMMNHLKRCIDSSRNF-DLTSALRPNTLSNGLKYSL 499

Query: 446  STGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGK 505
            +TG W    K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG 
Sbjct: 500  ATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGL 559

Query: 506  ICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVF 564
            +C   TP+G+ CGLVKNL +  +VS  +   PI   L + GME L +          K+F
Sbjct: 560  VCPAETPEGQACGLVKNLSLMCMVSVGTPASPIEHFLVSRGMEVLEEFEPSDGMAVSKIF 619

Query: 565  VDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVV- 623
            ++G W+GV ++       +   RR+  +  +V +  D  + E RI  DAGR++RPL VV 
Sbjct: 620  INGTWVGVSRNIDELADAVADLRRKNTVDAEVSLIHDVREGEFRILSDAGRVMRPLFVVN 679

Query: 624  ----ENMGKIKSL------------EGKN----------YTFQALLDHGIIELVGTEEEE 657
                E  G  KS             E K+          Y ++ L   G+I+L+  E+EE
Sbjct: 680  QKDDEMTGTKKSSLVLTKEHIARLHEDKDNQLSQGDEGFYGWEGLKSDGVIDLMDAEQEE 739

Query: 658  ----------------------------DCCTAWGIKYLLKDIEDKKPIKFTHCELDMSF 689
                                        D  T   I   L+   +     +THCE+  S 
Sbjct: 740  TAMICMTPEDLDIFRYLKETGINLASEDDIITEHNINKRLRTKINPTTHTYTHCEIHPSM 799

Query: 690  LLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPL--F 747
            LLG+   IIPF +H+ + R  YQS     QA+GF  TN + R+DT+++ L+YPQ+PL   
Sbjct: 800  LLGICASIIPFPDHNQSPRNTYQS-AMGKQAMGFFLTNYNKRMDTMANILYYPQKPLGIT 858

Query: 748  RTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRS 807
            R+M               L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS
Sbjct: 859  RSM-------------EYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRS 905

Query: 808  EHIRSYKAEVDNKEMQVKRRSSDDMVN-FGK------IQSKIGRVDSLDDDGFPFIGANL 860
               RSY           ++R   ++V  F K      ++ K G  D L+DDG    G  +
Sbjct: 906  LFFRSY--------TDAEKRVGINLVEKFEKPYRQDTLRLKQGTYDKLEDDGIVAPGTRV 957

Query: 861  QSGDIVIGKYADSGADH---------------SIKLKHTERGMVQKVVLSSNDDGKNFSV 905
               DI+IGK A    D+               S  L+ TE G+V +V+L++N DG  +  
Sbjct: 958  SGEDIIIGKTAPIQPDNQELGQRTVQHVKRDASTPLRSTESGIVDQVILTTNQDGLKYVK 1017

Query: 906  VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 965
            V +R  + P +GDKF+S HGQKG +G     E+ PFT +GI PDI+INPHA PSR T   
Sbjct: 1018 VRVRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFTREGITPDIIINPHAIPSRMTIAH 1077

Query: 966  LLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGE 1025
            L+E  L K +A +      G +  ATPF   +VD++++ L    +   G E LY G TG 
Sbjct: 1078 LIECLLSK-VATI-----KGFEGDATPFTEVTVDSVSKLLREYDYQSRGFEVLYHGHTGR 1131

Query: 1026 MVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLI 1085
             +R+ +F GPT+YQRL HM +DK+  R  GP+  +TRQPV  R R GG++FGEMERDC+I
Sbjct: 1132 KLRAQVFFGPTYYQRLRHMVDDKIHARARGPLQIMTRQPVEGRARDGGLRFGEMERDCMI 1191

Query: 1086 AHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVK 1145
            AHGAAA L ERLF +SD++++HIC  C  +  +     G         CR C +   I +
Sbjct: 1192 AHGAAAFLKERLFEVSDAFRVHICEICGLMTPIADLTKGTFE------CRPCKNKTKIAQ 1245

Query: 1146 ANVPYGAKLLCQELFSMGITLKFDTE 1171
             ++PY AKLL QEL +M I  +  T+
Sbjct: 1246 VHIPYAAKLLFQELAAMNIATRMFTD 1271


>gi|391332506|ref|XP_003740675.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
            [Metaseiulus occidentalis]
          Length = 1178

 Score =  617 bits (1592), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 410/1201 (34%), Positives = 612/1201 (50%), Gaps = 118/1201 (9%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYAS 85
            C     ++F+E GLV  Q++S++EFI+  +QK  +      ++     S     +     
Sbjct: 24   CWIVISAYFDEKGLVRQQLDSFDEFIQMSVQKIVEDTPPIELQAEATHSSGIIEQPTKYQ 83

Query: 86   MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
            ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +   + T  R   D  +
Sbjct: 84   VKFEQIYLSKPTHWEKDGAPT-PMMPNEARLRNLTYSAPLYVDI---IKTVIRDGEDPVE 139

Query: 146  TGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFIIK 199
            T  ++               IG+IP+M++S  C + G+      E  +C  D GGYFII 
Sbjct: 140  TQHQK-------------TFIGKIPIMLRSSYCLLNGLSDRDLSELNECPLDPGGYFIIN 186

Query: 200  GAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR---------NRLIVRLVDM--SKFE 248
            G+EKV +AQE++    ++V        A+K+E +          + L V ++    S  +
Sbjct: 187  GSEKVLIAQEKMATNTVYVFQMKDGKYAFKAECRSCIEHSSRPTSTLWVNMMARGGSGVK 246

Query: 249  DIKGGEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA 307
                G++++++  ++  EIPI I+F ALG  +D++I+  I +  ED  ++ ++  S+ +A
Sbjct: 247  KASIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFEDPEMMEMVKPSLDEA 306

Query: 308  -----DNKCDEFRKGR---------NALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHG 353
                  N    F   R         N +KY  ++++    P    ++ C           
Sbjct: 307  FVIQEQNVALNFIGSRGARPGVTKANRIKYAREILQKEMLPHVGVSDFC----------- 355

Query: 354  TKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAK 413
              +KA +LGYMV  LL A  GRR+ D+RD + NKRL+LAG L+    +    +  K +  
Sbjct: 356  ETKKAYYLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLMAFLFRGLFKNLTKEVRM 415

Query: 414  ALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPL 473
              Q+ +   +    +E  +   I+T+GL  + +TG W    K  +   G+   L R    
Sbjct: 416  FAQKFIDKGKDFN-LELAIKTRIITDGLKYSLATGNWGDQKKAHQARPGVSQVLNRLTYA 474

Query: 474  QTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-S 532
             TL  LRR    +   GK+   R  H + WG IC   TP+G   GLVKNL +   +S  S
Sbjct: 475  STLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGHAVGLVKNLALMSYISVGS 534

Query: 533  ILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL 592
               PI E L    ME L + A  ++    K+FV+G W+G+ +D    +  L++ RR+ ++
Sbjct: 535  QPSPILEFLEEWSMENLEEIAPSAIAEATKIFVNGCWVGIHRDPEQLMLTLQKLRRQMDI 594

Query: 593  -PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKSLEGKNYTFQAL 642
              ++V + RD    E+RI+ DAGRI RPLL+VEN         + K+K  E   Y++Q L
Sbjct: 595  IVSEVSMVRDIRDREIRIYTDAGRICRPLLIVENQKLLLKRHHIDKLKERECSYYSWQDL 654

Query: 643  LDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFAN 702
            +  G++E + T EEE    A     L +D        +THCE+  S +LG+   IIPF +
Sbjct: 655  VASGVVEYIDTLEEETVMLAMTPDDLTQDKALAYCSTYTHCEIHPSMILGVCASIIPFPD 714

Query: 703  HDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGH 762
            H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T   +         
Sbjct: 715  HNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLTTTRSME--------- 764

Query: 763  NHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEM 822
               L   EL  G NAIVA+  + GYNQEDS+++N ++++RG FRS   RSYK + +NK M
Sbjct: 765  --YLRFRELPAGINAIVAIMSYTGYNQEDSVILNASAVDRGFFRSVFYRSYK-DSENKRM 821

Query: 823  QVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD---------- 872
              +  + +          +    D LDDDG    G  +   D++IGK             
Sbjct: 822  GDQEETFEKPTRETCQGMRNAIYDKLDDDGIIAPGTRVSGDDVIIGKTITLPENDDDLDS 881

Query: 873  -----SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQK 927
                 S  D S  L+++E G+V +V+L+ N DG  F  + +R VR P +GDKF+S HGQK
Sbjct: 882  TNKRYSKRDASTFLRNSETGIVDQVMLTINSDGYKFCKIRVRSVRIPQIGDKFASRHGQK 941

Query: 928  GVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLK 987
            G  G    QE+ PFT++G+ PDI+INPHA PSR T G L+E   GK   A  KG      
Sbjct: 942  GTCGVTYRQEDMPFTVEGLTPDIIINPHAIPSRMTIGHLIECLQGK--VASNKGEIGD-- 997

Query: 988  RYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSE 1046
              ATPF    +V  I+  L   G+   G E +Y+G TG  V + IF+GPT+YQRL HM +
Sbjct: 998  --ATPFNDAVNVQKISNILMEYGYHLRGNEVMYNGHTGRKVNAQIFLGPTYYQRLKHMVD 1055

Query: 1047 DKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQM 1106
            DK+  R  GPV  L RQP+  R R GG++FGEMERDC I+HGAA  L ERLF  SD Y+ 
Sbjct: 1056 DKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFFASDPYRT 1115

Query: 1107 HICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
            HIC  C    +AN+   +           C+ C +   I +  +PY  KLL QEL SM I
Sbjct: 1116 HICNICGLIAIANLRNNIFE---------CKGCRNKTQISQITLPYACKLLFQELMSMNI 1166

Query: 1165 T 1165
             
Sbjct: 1167 A 1167


>gi|195501705|ref|XP_002097907.1| GE24221 [Drosophila yakuba]
 gi|194184008|gb|EDW97619.1| GE24221 [Drosophila yakuba]
          Length = 1176

 Score =  617 bits (1592), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 415/1221 (33%), Positives = 626/1221 (51%), Gaps = 134/1221 (10%)

Query: 17   LGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPSK 75
            +  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S 
Sbjct: 18   ISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSG 77

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT 135
            + E   R+ S++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +     T
Sbjct: 78   EVETPPRF-SLKFEQIYLSKPTHWEKDGSPS-PMMPNEARLRNLTYSAPLYVDI---TKT 132

Query: 136  QKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCD 189
            +     D  +T  ++               IG+IP+M++S  C +  +      E  +C 
Sbjct: 133  KNVEGLDPVETQHQK-------------TFIGKIPIMLRSTYCLLSQLTDRDLTELNECP 179

Query: 190  FDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR---------NRLIVR 240
             D GGYFII G+EKV +AQE++    ++V +      A+K+E +          + L V 
Sbjct: 180  LDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVN 239

Query: 241  LVDMSKFEDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
            ++     ++IK    G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  +
Sbjct: 240  MMARGS-QNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 298

Query: 297  LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
            + ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C
Sbjct: 299  MEMVKPSLDEAFVVQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFC 358

Query: 343  MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                         +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL    + 
Sbjct: 359  -----------ETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRG 407

Query: 403  HIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISG 462
               +  K +    Q+ +   +    +E  +  +I+T+GL  + +TG W    K  +  +G
Sbjct: 408  LFKNLMKEVRMYTQKFIDRGKDFN-LELAIKTNIITDGLRYSLATGNWGDQKKAHQARAG 466

Query: 463  IVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKN 522
            +   L R     TL  LRR    +   GK+   R  H + WG +C   TP+G   GLVKN
Sbjct: 467  VSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKN 526

Query: 523  LGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVS 581
            L +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    ++
Sbjct: 527  LALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMA 586

Query: 582  ELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKS 631
             LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VEN         +  +K 
Sbjct: 587  TLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKE 646

Query: 632  LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLL 691
             +  NY++Q L+  G++E + T EEE    A     L +D +      +THCE+  + +L
Sbjct: 647  RDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMIL 706

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T  
Sbjct: 707  GVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRS 765

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
             +            L   EL  G N+IVA+  + GYNQEDS+++N +++ERG FRS   R
Sbjct: 766  ME-----------YLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYR 814

Query: 812  SYKAEVDNKEMQVKRRSSDDMVNFGKIQS------KIGRVDSLDDDGFPFIGANLQSGDI 865
            SYK + +NK      R  D   NF K         +    D LDDDG    G  +   D+
Sbjct: 815  SYK-DSENK------RVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDV 867

Query: 866  VIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQ 910
            VIGK                  S  D S  L+++E G+V +V+L+ N +G  F  + +R 
Sbjct: 868  VIGKTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS 927

Query: 911  VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA 970
            VR P +GDKF+S HGQKG  G    QE+  FT +G+ PDI+INPHA PSR T G L+E  
Sbjct: 928  VRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECL 987

Query: 971  LGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRS 1029
             GK    LG     G    ATPF    +V  I+  L   G+   G E +Y+G TG  + +
Sbjct: 988  QGK----LGSN--KGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINA 1041

Query: 1030 LIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA 1089
             +F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC I+HGA
Sbjct: 1042 QVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGA 1101

Query: 1090 AANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKAN 1147
            A  L ERLF +SD Y++HIC  C    +AN+               C+ C +   I +  
Sbjct: 1102 AQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFE---------CKGCKNKTQISQVR 1152

Query: 1148 VPYGAKLLCQELFSMGITLKF 1168
            +PY AKLL QEL SM I  + 
Sbjct: 1153 LPYAAKLLFQELMSMNIAPRL 1173


>gi|209879223|ref|XP_002141052.1| RNA polymerase beta subunit [Cryptosporidium muris RN66]
 gi|209556658|gb|EEA06703.1| RNA polymerase beta subunit, putative [Cryptosporidium muris RN66]
          Length = 1184

 Score =  617 bits (1592), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 408/1207 (33%), Positives = 615/1207 (50%), Gaps = 126/1207 (10%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIV--EPGYDPSKKGEGEWRYASMRFG 89
            ++F + GLVS Q+ S+N+FI   LQ+  D     ++  +P Y P ++ +   +Y  ++FG
Sbjct: 21   TYFRDRGLVSQQLESFNDFIMYKLQEIVDEHPPIVIIPQPQYRPDEQIDTSIQYV-LKFG 79

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
            Q++L +PS      G    ++P  ARL+++TY+S + V  + ++Y   R+  D  +T   
Sbjct: 80   QLSLSRPSV-EEREGVARGLWPSEARLRSLTYASPVFVDAEQKIY---RMHEDGTQT--- 132

Query: 150  QYIQKEVLSDETT--NIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGA 201
                   L  ETT   + + +IP+M++S+ CW   + +      G+C +D GGYFII G 
Sbjct: 133  -------LLHETTYSRLPLAKIPIMLRSEYCWTHNISERELQSAGECIYDQGGYFIINGM 185

Query: 202  EKVFVAQEQICLKRLWV-SNSMGWTVAYKSENKRNRLIVRLVD--MSKFEDIKGGEKVLS 258
            EKV + QE++    +++          + +E + NR  ++       K      G+ V +
Sbjct: 186  EKVLIGQERMANNFVYLFQKKQPSKYTWIAEVRSNREGMQATSGFSVKLRGGSQGQVVAT 245

Query: 259  VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGR 318
            + ++ T+IPI ILF ALGV SDK+I+    +   D  +L IL  S+ +      EF    
Sbjct: 246  LPYIRTDIPIAILFRALGVLSDKDILLRCVYDFSDSQMLAILRPSLEETF----EFSSQE 301

Query: 319  NALKYVDKLIKGTTFPPG-----ESTEECMNTYLFPSLHGTK----QKARFLGYMVKCLL 369
              L ++ K  +G T         +   E +   + P +  T     +KA F+GYMV  L 
Sbjct: 302  VCLDFIGK--RGPTVGAIREKRIQYARELLEREVLPHVGVTIGCEFRKAYFIGYMVHRLC 359

Query: 370  QAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIE 429
                GR   D+RD F  KRL+LAG L+            K M + LQR++   +      
Sbjct: 360  MGALGRVPEDDRDHFGKKRLDLAGPLVAASFGQSFRKMMKDMRRLLQRNIDNGKEFDVAG 419

Query: 430  YYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYT 489
                AS +T  L   F+TG W          +G+   L R      L  LRR    +   
Sbjct: 420  VIRSASYITQTLQYQFATGNWGKDRDGKIVRTGVAQVLSRLTFASALSYLRRLNTPLGRE 479

Query: 490  GKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFNS-GMEK 548
            G +   R  H +HWG IC   TP+G   GLVKNL +   +S            +  GM+ 
Sbjct: 480  GTLAKPRQLHNTHWGMICPAETPEGHAVGLVKNLALMCEISVGYRPFAIRTFLDEWGMDS 539

Query: 549  LADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVR 608
            + +     +  K KVF++G+W+G   DS   ++ LR  RR  E+P +  I  D +  EV+
Sbjct: 540  IDEVPPEDIKDKIKVFLNGNWVGCFDDSEDSITNLRMIRRSGEIPYETSIVLDVVNREVK 599

Query: 609  IFMDAGRILRPLLVVENMGKIK-------SLEG--------------------------- 634
            +F DAGR +RPL +V   G++K       +L G                           
Sbjct: 600  LFTDAGRSMRPLYIVGEDGELKIRKSHIATLLGIKMPENNSNEDMKILSEVDLPEGGISR 659

Query: 635  -KNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPI--KFTHCELDMSFLL 691
              ++T+  L+  GIIE +  EEEE    A      + D+ D +     +THCE+  S +L
Sbjct: 660  DSDFTWDDLIKSGIIEYIDCEEEETAMIAM----FMNDLRDARGYCSTYTHCEIHPSLIL 715

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G+   IIPF +H+ + R +YQS     QA+G  T+N ++R+DTL + L+YPQ+PL  T  
Sbjct: 716  GICASIIPFPDHNQSPRNVYQS-AMGKQAMGVYTSNYNVRMDTLGYVLYYPQKPLVTTR- 773

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
                        ++  R EL  G N IV +  + GYNQEDSL+MN++S++RG+FRS   R
Sbjct: 774  ---------AMTYMRFR-ELPAGINCIVGIMCYSGYNQEDSLIMNQSSIDRGLFRSVFFR 823

Query: 812  SYKAEVDNKEMQVKRRSSDDMVNFGKIQS-KIGRVDSLDDDGFPFIGANLQSGDIVIGKY 870
            +Y +E   K++      + ++ N  ++   + G   +LD DG    G  +   DI+IGK+
Sbjct: 824  TYVSE--EKQIGSNLIEAFELPNPDEVSGLRFGNYGNLDRDGLIEPGNRVLGDDIIIGKF 881

Query: 871  AD-------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLG 917
                           +  D SI L+ +E G+V +V+LS+N  G  F+ V +R +R P +G
Sbjct: 882  GPIPPEERDNRIERLTKRDCSIGLRSSEHGVVDEVLLSTNSKGVKFTKVKVRTIRVPHIG 941

Query: 918  DKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAA 977
            DKF+S HGQKG +G     E+ PFT  GIVPDI++NPHA PSR T G L+E  LGK  A 
Sbjct: 942  DKFASRHGQKGTIGITYRMEDMPFTQDGIVPDIIMNPHAIPSRMTIGHLIECILGKTCA- 1000

Query: 978  LGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTF 1037
                   G++  ATPF   +V+ I+ +LH AGF + G E +Y+G TG  + S IFIGPT+
Sbjct: 1001 -----IEGMEGDATPFTKVTVEEISNRLHAAGFQRNGNEVMYNGHTGRQLESRIFIGPTY 1055

Query: 1038 YQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERL 1097
            YQRL HM +DK+  R  G +  LTRQP   R R GG++FGEMERDC+I+HGAA  L ERL
Sbjct: 1056 YQRLKHMVDDKIHARAKGAITMLTRQPREGRSREGGLRFGEMERDCMISHGAAKMLKERL 1115

Query: 1098 FTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQ 1157
            F   D+Y++H+C  C     +I     G +      C++C +   I +  +PY  KLL Q
Sbjct: 1116 FDQCDAYRVHVCELC----GLICTADLGKQHYE---CKVCSNKSQISQVCLPYACKLLLQ 1168

Query: 1158 ELFSMGI 1164
            EL +M I
Sbjct: 1169 ELMAMSI 1175


>gi|17136444|ref|NP_476706.1| RNA polymerase II 140kD subunit [Drosophila melanogaster]
 gi|195329082|ref|XP_002031240.1| GM24152 [Drosophila sechellia]
 gi|12644108|sp|P08266.2|RPB2_DROME RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2; AltName: Full=DNA-directed RNA polymerase II 140 kDa
            polypeptide
 gi|7299847|gb|AAF55024.1| RNA polymerase II 140kD subunit [Drosophila melanogaster]
 gi|27819971|gb|AAO25022.1| LD22387p [Drosophila melanogaster]
 gi|194120183|gb|EDW42226.1| GM24152 [Drosophila sechellia]
          Length = 1176

 Score =  617 bits (1592), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 415/1221 (33%), Positives = 626/1221 (51%), Gaps = 134/1221 (10%)

Query: 17   LGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPSK 75
            +  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S 
Sbjct: 18   ISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSG 77

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT 135
            + E   R+ S++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +     T
Sbjct: 78   EVETPPRF-SLKFEQIYLSKPTHWEKDGSPS-PMMPNEARLRNLTYSAPLYVDI---TKT 132

Query: 136  QKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCD 189
            +     D  +T  ++               IG+IP+M++S  C +  +      E  +C 
Sbjct: 133  KNVEGLDPVETQHQK-------------TFIGKIPIMLRSTYCLLSQLTDRDLTELNECP 179

Query: 190  FDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR---------NRLIVR 240
             D GGYFII G+EKV +AQE++    ++V +      A+K+E +          + L V 
Sbjct: 180  LDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVN 239

Query: 241  LVDMSKFEDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
            ++     ++IK    G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  +
Sbjct: 240  MMARGS-QNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 298

Query: 297  LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
            + ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C
Sbjct: 299  MEMVKPSLDEAFVVQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFC 358

Query: 343  MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                         +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL    + 
Sbjct: 359  -----------ETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRG 407

Query: 403  HIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISG 462
               +  K +    Q+ +   +    +E  +  +I+T+GL  + +TG W    K  +  +G
Sbjct: 408  LFKNLMKEVRMYTQKFIDRGKDFN-LELAIKTNIITDGLRYSLATGNWGDQKKAHQARAG 466

Query: 463  IVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKN 522
            +   L R     TL  LRR    +   GK+   R  H + WG +C   TP+G   GLVKN
Sbjct: 467  VSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKN 526

Query: 523  LGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVS 581
            L +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    ++
Sbjct: 527  LALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMA 586

Query: 582  ELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKS 631
             LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VEN         +  +K 
Sbjct: 587  TLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKE 646

Query: 632  LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLL 691
             +  NY++Q L+  G++E + T EEE    A     L +D +      +THCE+  + +L
Sbjct: 647  RDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMIL 706

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T  
Sbjct: 707  GVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRS 765

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
             +            L   EL  G N+IVA+  + GYNQEDS+++N +++ERG FRS   R
Sbjct: 766  ME-----------YLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYR 814

Query: 812  SYKAEVDNKEMQVKRRSSDDMVNFGKIQS------KIGRVDSLDDDGFPFIGANLQSGDI 865
            SYK + +NK      R  D   NF K         +    D LDDDG    G  +   D+
Sbjct: 815  SYK-DSENK------RVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDV 867

Query: 866  VIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQ 910
            VIGK                  S  D S  L+++E G+V +V+L+ N +G  F  + +R 
Sbjct: 868  VIGKTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS 927

Query: 911  VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA 970
            VR P +GDKF+S HGQKG  G    QE+  FT +G+ PDI+INPHA PSR T G L+E  
Sbjct: 928  VRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECL 987

Query: 971  LGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRS 1029
             GK    LG     G    ATPF    +V  I+  L   G+   G E +Y+G TG  + +
Sbjct: 988  QGK----LGSN--KGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINA 1041

Query: 1030 LIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA 1089
             +F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC I+HGA
Sbjct: 1042 QVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGA 1101

Query: 1090 AANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKAN 1147
            A  L ERLF +SD Y++HIC  C    +AN+               C+ C +   I +  
Sbjct: 1102 AQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFE---------CKGCKNKTQISQVR 1152

Query: 1148 VPYGAKLLCQELFSMGITLKF 1168
            +PY AKLL QEL SM I  + 
Sbjct: 1153 LPYAAKLLFQELMSMNIAPRL 1173


>gi|367041247|ref|XP_003651004.1| hypothetical protein THITE_2110960 [Thielavia terrestris NRRL 8126]
 gi|346998265|gb|AEO64668.1| hypothetical protein THITE_2110960 [Thielavia terrestris NRRL 8126]
          Length = 1282

 Score =  617 bits (1591), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 439/1302 (33%), Positives = 650/1302 (49%), Gaps = 179/1302 (13%)

Query: 2    DSDD-----NGFTDPTSLCDLGEEFLKTF-CRKAAVSFFNEYGLVSHQINSYNEFIKNGL 55
            D+DD      GF D T+L   GE+ +    C +   S+F+  GLVS QI+S++EF    +
Sbjct: 19   DNDDRYDVEGGFDDGTALG--GEDSITPEDCWEVISSYFDMKGLVSQQIDSFDEFTTTTI 76

Query: 56   QKAFDSFGETIVE---PGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPR 112
            Q   D + +  ++   PG D  +  +   R   + FG V + KP+     G +   + P 
Sbjct: 77   QSLVDEYADLTLDHPNPGDDSGR--DIAMRRYDIHFGNVMISKPTLTETTG-ETTVLLPY 133

Query: 113  HARLQNMTYSS--------RMKVKVQFQVYTQ-----------------KRVTSDKFKTG 147
              R +N+TYS+        R +V V  +V  +                 K +  ++  TG
Sbjct: 134  ECRDRNLTYSAPMYCRVSKRARVAVNEEVRLEDMDDDQRAYMAQTGEVPKTIRWEEEDTG 193

Query: 148  REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGA 201
              + I K    ++   I +G++PVMVKS +C + G       +  +C +D GGYFII G+
Sbjct: 194  PREGIAKGDDDEQGDLIFLGKLPVMVKSQVCHLHGEDDESLFQLNECPYDQGGYFIINGS 253

Query: 202  EKVFVAQEQICLKRLWV-SNSMGWTVAYKSE-----NKRNRLIVRL-----VDMSKFEDI 250
            EKV +AQE+     + V     G +V+Y++E      K +RLI  L        S  +  
Sbjct: 254  EKVLIAQERSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLISSLQMKLHTKASPDKGR 313

Query: 251  KGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNK 310
            +     +++ ++  ++ + I+F ALG+ SD++I+N I +   D  +L  L   I +A   
Sbjct: 314  QANTVSVTLPYVREDVSLAIVFRALGIVSDEDILNHICYDRSDTQMLEALRPCIEEA--F 371

Query: 311  CDEFRKGRNALKYVDKLIKGTTFPPGE-------STEECMNTYLFPSLHGTK----QKAR 359
            C + R+   AL ++ K   G     G+       + ++ +   + P +  T+    +KA 
Sbjct: 372  CIQDRE--IALDFIGKRGNGNA---GQNRSNRIRAAKDLLQKEMLPHISQTEGCETRKAF 426

Query: 360  FLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDL 419
            FLGYMV  LLQ   GRR  D+RD F  KRL+LAG LL +  +  I    + +   ++R +
Sbjct: 427  FLGYMVHKLLQCALGRRDTDDRDHFGKKRLDLAGPLLAKLFRGIIRRMTQDLMSYMKRCI 486

Query: 420  YGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDL 479
              ++    +   +  S LTNGL  + +TG W    K     +G+   L R     TL  L
Sbjct: 487  DTNKNF-SLALGIKHSTLTNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHL 545

Query: 480  RRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-LEPIF 538
            RRT   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   VS     EPI 
Sbjct: 546  RRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPAEPIV 605

Query: 539  EQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEI 598
            E +    ME L +          KVFV+G W+GV +D    VS ++  RR+  +  +V +
Sbjct: 606  EFMIARNMEVLEEYEPLRYPNATKVFVNGTWVGVHQDPKHLVSLVQGLRRKNVISFEVSL 665

Query: 599  KRDELQSEVRIFMDAGRILRPLLVVE----------------NMGKIKSLEGKN------ 636
             RD    E +IF DAGR++RPL  VE                N   I+ LE         
Sbjct: 666  VRDIRDREFKIFSDAGRVMRPLFTVEQEDNGANGVEKGQLILNKEHIQRLEADKELGKYH 725

Query: 637  ---YTFQALLDHGIIELVGTEEEEDCCTAWGIKYL----------------------LKD 671
               + ++ LL  G IE +  EEEE        + L                      ++ 
Sbjct: 726  PDYWGWKGLLRSGAIEYLDAEEEETAMICMSPEDLDMFRLSKMGFNVTDTSGQGNSRIRT 785

Query: 672  IEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIR 731
              +     +THCE+  S LLG+   IIPF +H+ + R  YQS     QA+GF  TN S R
Sbjct: 786  KINPTTHMYTHCEIHPSMLLGICASIIPFPDHNQSPRNTYQS-AMGKQAMGFFLTNYSRR 844

Query: 732  VDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQED 791
            +DT+++ L+YPQ+PL  T   +            L   EL  GQNAIVA+  + GYNQED
Sbjct: 845  MDTMANILYYPQKPLATTRSME-----------FLKFRELPAGQNAIVAIACYSGYNQED 893

Query: 792  SLVMNRASLERGMFRSEHIRSY-----KAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVD 846
            S++MN++S++RG+FRS   RSY     +  ++  E   K   SD       ++ K    D
Sbjct: 894  SVIMNQSSIDRGLFRSLFFRSYTDCEKRVGINIIEKFEKPNRSD------TLRLKHSTYD 947

Query: 847  SLDDDGFPFIGANLQSGDIVIGKY-------ADSGA--------DHSIKLKHTERGMVQK 891
             LD DG    G  +   DI+IGK        A+ G         D S  L+ TE G+V  
Sbjct: 948  KLDMDGIVAPGVRVSGEDIIIGKTCPINPENAELGQRSTQHVKRDASTPLRSTESGIVDS 1007

Query: 892  VVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIV 951
            V+L++N DG  +  V +R  + P +GDKF+S HGQKG +G    QE+ PFT +GI PDI+
Sbjct: 1008 VILTTNQDGMRYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTFRQEDMPFTCEGITPDII 1067

Query: 952  INPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFS 1011
            INPHA PSR T   L+E  L K ++ L      G++  ATPF   +VD+++  L   G+ 
Sbjct: 1068 INPHAIPSRMTIAHLIECLLSK-VSTL-----KGMEGDATPFTEVTVDSVSALLREHGYQ 1121

Query: 1012 KWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRF 1071
              G E +Y G TG  +R+ +F GPT+YQRL HM +DK+  R  GP+  +TRQPV  R R 
Sbjct: 1122 SRGFEIMYHGHTGRKLRAQVFFGPTYYQRLRHMVDDKIHARARGPLQIMTRQPVEGRARD 1181

Query: 1072 GGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKC---KNVANVIQRVVGGGRK 1128
            GG++FGEMERDC+IAHGAA+ L ERLF +SD++++HIC  C     +AN+ ++       
Sbjct: 1182 GGLRFGEMERDCMIAHGAASFLKERLFEVSDAFRVHICEICGLMTPIANLTKQSF----- 1236

Query: 1129 VRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
                 CR C +   I + ++PY AKLL QEL SM I  +  T
Sbjct: 1237 ----ECRPCKNKTKIAQVHIPYAAKLLFQELMSMNIASRMFT 1274


>gi|413915214|gb|AFW21469.1| RNA polymerase II beta subunit [Balansia obtecta]
          Length = 1261

 Score =  617 bits (1591), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 418/1268 (32%), Positives = 641/1268 (50%), Gaps = 162/1268 (12%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKG-EGEWRYA 84
            C     SFF   GLVS Q +S++EF +  +Q   + +    ++    PS  G +   R  
Sbjct: 25   CWTVISSFFETKGLVSQQTDSFDEFTQTTIQDLVNEYSTITLDQPNPPSPPGMKIALRRY 84

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKV----------QFQVY 134
             ++FG V + +P+  +   G    + P   R +N+TY+S + + +          +  ++
Sbjct: 85   EIKFGTVMVSRPTI-SETDGTVTSLLPYECRDRNLTYASPLYINITKKVSAAVEREIPLH 143

Query: 135  TQKRVTSDKFKTGREQ-----YIQKEVLSDETTN--------IIIGRIPVMVKSDLCWMK 181
                    ++   RE      + Q+E   D+           + +G++P+MVKS +C + 
Sbjct: 144  EMDDAQQAEYARTRENPTKLVWEQEESPDDDEAGKSEDWKNMVFVGKLPIMVKSKICHLS 203

Query: 182  GVEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKS 230
                       +C +D GGYF+I G+EKV +AQE+     + V      +   +T   +S
Sbjct: 204  RETDESLFMVNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSPYTYTAEIRS 263

Query: 231  E-NKRNRLI--VRLVDMSKFEDIKGG---EKVLSVYFLSTEIPIWILFFALGVSSDKEIV 284
               K +RLI  ++L    K +  +GG       ++ F+ +++PI I+F ALGV SD++I+
Sbjct: 264  ALEKGSRLISSLQLKLYGKGDSARGGFGQTIHTTLPFVKSDLPIAIVFRALGVVSDEDIL 323

Query: 285  NLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTE---- 340
            N I +  +D  +L +L   I +A   C + R+   AL ++ K  +G     G   E    
Sbjct: 324  NHICYDRKDSQMLEMLRPCIEEA--FCVQDRE--VALDFIGK--RGNRDQAGLGREKRVR 377

Query: 341  ---ECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAG 393
               + +     P +  T+    +KA FLGYMV  LLQ   GRR+ D+RD F  KRL+LAG
Sbjct: 378  VAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLDLAG 437

Query: 394  ELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHP 453
             LL +  +  +      ++  L+R + G+R    +   +    L+NGL  + +TG W   
Sbjct: 438  PLLAKLFRGIVRRMNNELSNYLRRCVEGNRHFN-LAVGIKPGTLSNGLKYSLATGNWGDQ 496

Query: 454  FKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPD 513
             K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+
Sbjct: 497  KKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPE 556

Query: 514  GENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGV 572
            G+ CGLVKNL +   VS  S  EP+ E + N GME + +          K+FV+G W+GV
Sbjct: 557  GQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVEEYEPLRYPHATKIFVNGTWVGV 616

Query: 573  CKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------- 625
             +D    VS++   RR+  L  +V + R+    E +IF DAGR++RP+  V+        
Sbjct: 617  HQDPKHLVSQVLDTRRKSYLQYEVSLVREIRDQEFKIFSDAGRVMRPVFTVQQEDDPETG 676

Query: 626  ------------MGKIKSLEGK-------NYTFQALLDHGIIELVGTEEEED---CCTAW 663
                        + K+   + +          ++ L+  G +E +  EEEE    C T  
Sbjct: 677  IEKGHLVLSKDLVNKLAKEQAEPPDDPSEKIGWEGLIRAGAVEYLDAEEEETSMICMTPE 736

Query: 664  GIKYL--------------------LKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANH 703
             ++                      LK   +     +THCE+  S +LG+   IIPF +H
Sbjct: 737  DLELYRLQKAGVALDDDNGDDLNRRLKTKTNPTTHMYTHCEIHPSMILGICASIIPFPDH 796

Query: 704  DHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHN 763
            + + R  YQS     QA+GF  TN S R+DT+++ L+YPQ+PL  T   +          
Sbjct: 797  NQSPRNTYQS-AMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSME---------- 845

Query: 764  HILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQ 823
              L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   RSY     ++E +
Sbjct: 846  -FLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYS----DQEKK 900

Query: 824  VKRRSSD---DMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA-------DS 873
            V    ++      +   ++ K G  D LD+DG    G  +   DI+IGK A       D 
Sbjct: 901  VGLNYTEVFEKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDQENQDL 960

Query: 874  GA--------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHG 925
            G         D S  L+ TE G++  V+L+ N D   +  V +R  + P +GDKF+S HG
Sbjct: 961  GTRTSVHQRRDISTPLRSTENGIIDSVILTVNADNVKYVKVRVRTTKIPQIGDKFASRHG 1020

Query: 926  QKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSG 985
            QKG +G    QE+ PFT +G+ PDI+INPHA PSR T   L+E  L K ++ L      G
Sbjct: 1021 QKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSK-VSTL-----EG 1074

Query: 986  LKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMS 1045
            ++  ATPF   +VD+++E L + G+   G E +Y+G TG+ +R+ +F GPT+YQRL HM 
Sbjct: 1075 MEGDATPFTDVTVDSVSELLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLRHMV 1134

Query: 1046 EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQ 1105
            +DK+  R  GPV  +TRQPV  R R GG++FGEMERDC+IAHGAAA L ERLF +SD+++
Sbjct: 1135 DDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAFR 1194

Query: 1106 MHICRKC---KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSM 1162
            +H+C  C     +AN+ ++            CR C +   I + ++PY AKLL QEL SM
Sbjct: 1195 VHVCEICGLMTPIANLSKQSFE---------CRPCKNKTKIAQIHIPYAAKLLFQELQSM 1245

Query: 1163 GITLKFDT 1170
             I  +  T
Sbjct: 1246 NIAARMFT 1253


>gi|195064711|ref|XP_001996619.1| GH19704 [Drosophila grimshawi]
 gi|193892751|gb|EDV91617.1| GH19704 [Drosophila grimshawi]
          Length = 1175

 Score =  617 bits (1591), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 416/1221 (34%), Positives = 627/1221 (51%), Gaps = 134/1221 (10%)

Query: 17   LGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPSK 75
            +  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S 
Sbjct: 17   ISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSG 76

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT 135
            + E   R+ S++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +     T
Sbjct: 77   EVETPPRF-SLKFEQIYLSKPTHWEKDGSPS-PMMPNEARLRNLTYSAPLYVDI---TKT 131

Query: 136  QKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCD 189
            +     D  +T  ++               IG+IP+M++S  C +  +      E  +C 
Sbjct: 132  KNVEGLDPVETQHQK-------------TFIGKIPIMLRSTYCLLSQLTDRDLTELNECP 178

Query: 190  FDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR---------NRLIVR 240
             D GGYFII G+EKV +AQE++    ++V +      A+K+E +          + L V 
Sbjct: 179  LDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVN 238

Query: 241  LVDMSKFEDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
            ++     ++IK    G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  +
Sbjct: 239  MMARGS-QNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 297

Query: 297  LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
            + ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C
Sbjct: 298  MEMVKPSLDEAFVVQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFC 357

Query: 343  MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                         +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL    + 
Sbjct: 358  -----------ETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 403  HIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISG 462
               +  K +    Q+ +   +    +E  +  +I+T+GL  + +TG W    K  +  +G
Sbjct: 407  LFKNLMKEVRMYTQKFIDRGKDFN-LELAIKTNIITDGLRYSLATGNWGDQKKAHQARAG 465

Query: 463  IVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKN 522
            +   L R     TL  LRR    +   GK+   R  H + WG +C   TP+G   GLVKN
Sbjct: 466  VSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKN 525

Query: 523  LGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVS 581
            L +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    ++
Sbjct: 526  LALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMA 585

Query: 582  ELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKS 631
             LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VEN         +  +K 
Sbjct: 586  TLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGTLLLKKTHVEMLKE 645

Query: 632  LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLL 691
             +  NY++Q L+  G++E + T EEE    A     L +D +      +THCE+  + +L
Sbjct: 646  RDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMIL 705

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T  
Sbjct: 706  GVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRS 764

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
             +            L   EL  G N+IVA+  + GYNQEDS+++N +++ERG FRS   R
Sbjct: 765  ME-----------YLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYR 813

Query: 812  SYKAEVDNKEMQVKRRSSDDMVNFGKIQS------KIGRVDSLDDDGFPFIGANLQSGDI 865
            SYK + +NK      R  D   NF K         +    D LDDDG    G  +   D+
Sbjct: 814  SYK-DSENK------RVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDV 866

Query: 866  VIGKYA---------DSGA------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQ 910
            VIGK           DS        D S  L+++E G+V +V+L+ N +G  F  + +R 
Sbjct: 867  VIGKTITLPENDDELDSNTKRFAKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS 926

Query: 911  VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA 970
            VR P +GDKF+S HGQKG  G    QE+  FT +G+ PDI+INPHA PSR T G L+E  
Sbjct: 927  VRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECL 986

Query: 971  LGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRS 1029
             GK    LG     G    ATPF    +V  I+  L   G+   G E +Y+G TG  + +
Sbjct: 987  QGK----LGSN--KGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINA 1040

Query: 1030 LIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA 1089
             +F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC I+HGA
Sbjct: 1041 QVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGA 1100

Query: 1090 AANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKAN 1147
            A  L ERLF +SD Y++HIC  C    +AN+               C+ C +   I +  
Sbjct: 1101 AQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFE---------CKGCKNKTQISQVR 1151

Query: 1148 VPYGAKLLCQELFSMGITLKF 1168
            +PY AKLL QEL SM I  + 
Sbjct: 1152 LPYAAKLLFQELMSMNIAPRL 1172


>gi|302488402|ref|NP_001019632.2| DNA-directed RNA polymerase II subunit RPB2 [Danio rerio]
          Length = 1174

 Score =  617 bits (1591), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 424/1239 (34%), Positives = 626/1239 (50%), Gaps = 146/1239 (11%)

Query: 2    DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-D 60
            D DD+  T      DL +E     C     S+F+E GLV  Q++S++EFI+  +Q+   D
Sbjct: 11   DEDDDEITP-----DLWQEA----CWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 61   SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
            +    +       S + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+T
Sbjct: 62   APPIDLQAEAQHTSGEVEEPPRYL-LKFEQIYLSKPTHWERDGAPS-PMMPNEARLRNLT 119

Query: 121  YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
            YS+ + V +          T    K G EQ         +     IG+IP+M++S  C +
Sbjct: 120  YSAPLYVDI----------TKTIIKDGEEQQ------QTQHQKTFIGKIPIMLRSTYCLL 163

Query: 181  KGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE--- 231
             G+      E  +C  D GGYFII G+EKV +AQE++    ++V        AY  E   
Sbjct: 164  SGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRS 223

Query: 232  ----NKRNRLIVRLVDMSK----FEDIKGGEKVLSVY-FLSTEIPIWILFFALGVSSDKE 282
                + R    + +  M++     +    G++++S   ++  E+PI I+F ALG  SD++
Sbjct: 224  CLENSSRPTSTIWVSMMARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRD 283

Query: 283  IVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLI 328
            I+  I +  +D  ++ ++  S+ +A      N    F   R A         +KY  +++
Sbjct: 284  ILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVL 343

Query: 329  KGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKR 388
            +    P    ++ C             +KA FLGYMV  LL A  GRR+ D+RD + NKR
Sbjct: 344  QKEVLPHVGVSDFC-----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKR 392

Query: 389  LELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTG 448
            L+LAG LL    +    +  K +    Q+ +   +    +E  +   I+++GL  + +TG
Sbjct: 393  LDLAGPLLAFLFRGMFKNLLKEIRIYAQKFIDRGKDFN-LELAIKTRIISDGLKYSLATG 451

Query: 449  AWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICF 508
             W    K  +  +G+   L R     TL  LRR    +   GK+   R  H + WG +C 
Sbjct: 452  NWGDVKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMVCP 511

Query: 509  LSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDG 567
              TP+G   GLVKNL +   +S  S   PI E L    ME L + +  ++    K+FV+G
Sbjct: 512  AETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNG 571

Query: 568  DWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVE-- 624
             W+G+ KD    ++ LR+ RR+ ++  ++V + RD  + E+RI+ DAGRI RPLL+VE  
Sbjct: 572  CWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQ 631

Query: 625  -------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKP 677
                   ++ ++K  E  NY++Q L+  G++E + T EEE    A        D+++K  
Sbjct: 632  KLLLKRRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAM----TPDDLQEKGV 687

Query: 678  I---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDT 734
                 +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DT
Sbjct: 688  AYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDT 746

Query: 735  LSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLV 794
            L+H L+YPQ+PL  T   +            L   EL  G N+IVA+  + GYNQEDS++
Sbjct: 747  LAHVLYYPQKPLVTTRSME-----------YLRFRELPAGINSIVAIASYTGYNQEDSVI 795

Query: 795  MNRASLERGMFRSEHIRSYKAE-----VDNKEMQVK--RRSSDDMVNFGKIQSKIGRVDS 847
            MNR++++RG FRS   RSYK +      D +E+  K  R +   M        +    D 
Sbjct: 796  MNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGM--------RHAIYDK 847

Query: 848  LDDDGFPFIGANLQSGDIVIGKYAD---------------SGADHSIKLKHTERGMVQKV 892
            LDDDG    G  +   D++IGK                  +  D S  L+ +E G+V +V
Sbjct: 848  LDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRTSETGIVDQV 907

Query: 893  VLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVI 952
            +++ N +G  F  + +R VR P +GDKF+S HGQKG  G    QE+ PFT +GI PDI+I
Sbjct: 908  MVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIII 967

Query: 953  NPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFS 1011
            NPHA PSR T G L+E   GK   +  KG        ATPF    +V  ++  L   G+ 
Sbjct: 968  NPHAIPSRMTVGHLIECLQGK--VSANKGEIGD----ATPFNDAVNVQKVSNLLSEYGYH 1021

Query: 1012 KWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRF 1071
              G E LY+G TG  + S IF+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R 
Sbjct: 1022 LRGNEVLYNGFTGRKLTSQIFVGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRD 1081

Query: 1072 GGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRG 1131
            GG++FGEMERDC IAHGAA  L ERLF  SD YQ+H+C  C  +A           +   
Sbjct: 1082 GGLRFGEMERDCQIAHGAAQFLKERLFEASDPYQVHVCNLCGLMAI-------ANTRTHT 1134

Query: 1132 PYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
              CR C +   I    +PY  KLL QEL SM I  +  T
Sbjct: 1135 YECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMT 1173


>gi|324120680|dbj|BAJ78731.1| RNA polymerase II second largest subunit [Ctenocephalides felis]
          Length = 1175

 Score =  617 bits (1590), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 409/1220 (33%), Positives = 625/1220 (51%), Gaps = 130/1220 (10%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPS 74
            ++  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S
Sbjct: 16   EISTELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIDLQAEAQHTS 75

Query: 75   KKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVY 134
             + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +     
Sbjct: 76   GEIENPPRYV-LKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLTYSAPLYVDIT---- 129

Query: 135  TQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDC 188
              K +  D           K+ +  +     IG+IP+M++S  C + G+      E  +C
Sbjct: 130  --KTIIMDG----------KDPVETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNEC 177

Query: 189  DFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVRL 241
              D GGYFII G+EKV +AQE++    ++V +      A+K+E       + R    + +
Sbjct: 178  PLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKFAFKAEIRSCLEHSSRPTSTLWV 237

Query: 242  VDMSKF-EDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
              M++  + IK    G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  +
Sbjct: 238  NMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDQEM 297

Query: 297  LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
            + ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C
Sbjct: 298  MEMVKPSLDEAFVVQEQNVALNFIGARGARPGVTKDKRIKYAREILQKEMLPHVGVSDFC 357

Query: 343  MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                         +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL    + 
Sbjct: 358  -----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 403  HIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISG 462
               +  K +    Q+ +   +    +E  +   I+T+GL  + +TG W    K  +  +G
Sbjct: 407  LFKNLMKEVRMYAQKFIDRGKDFN-LELAIKTKIITDGLRYSLATGNWGDQKKAHQARAG 465

Query: 463  IVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKN 522
            +   L R     TL  LRR    +   GK+   R  H + WG IC   TP+G   GLVKN
Sbjct: 466  VSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKN 525

Query: 523  LGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVS 581
            L +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    ++
Sbjct: 526  LALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMT 585

Query: 582  ELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKS 631
             LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VEN         +  +K 
Sbjct: 586  TLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENRTLLLKKRHIDMLKE 645

Query: 632  LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLL 691
             +  NY +Q L+  G++E + T EEE    A     L ++        +THCE+  + +L
Sbjct: 646  RDYTNYGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQERAYAYCTTYTHCEIHPAMIL 705

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T  
Sbjct: 706  GVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRS 764

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
             +            L   EL  G N+IVA+  + GYNQEDS+++N +++ERG FRS   R
Sbjct: 765  ME-----------YLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYR 813

Query: 812  SYK----AEVDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGD 864
            SYK      + ++E Q +   R++   M N           D LD+DG    G  +   D
Sbjct: 814  SYKDSETKRMGDQEEQFEKPNRQTCQGMRN--------ALYDKLDEDGIIAPGIRVSGDD 865

Query: 865  IVIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLR 909
            ++IGK                  +  D S  L+++E G+V +V+L+ N +G  F  + +R
Sbjct: 866  VIIGKTITLPENDDELEGTTKRHTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVR 925

Query: 910  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEA 969
             VR P +GDKF+S HGQKG  G    QE+ PFT +G++PDI+INPHA PSR T G L+E 
Sbjct: 926  SVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLMPDIIINPHAIPSRMTIGHLIEC 985

Query: 970  ALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVR 1028
              GK       G   G    ATPF    +V  I+  L   G+   G E +Y+G TG  + 
Sbjct: 986  IQGK------LGANKGEIGDATPFNDAVNVQKISTLLQEYGYHLRGNEVMYNGHTGRKIN 1039

Query: 1029 SLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG 1088
            + +F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC I+HG
Sbjct: 1040 AQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHG 1099

Query: 1089 AAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANV 1148
            AA  L ERLF +SD Y++H+C  C  +A           +     C+ C +   I +  +
Sbjct: 1100 AAQFLRERLFEVSDPYRIHVCNFCGLIAI-------ANLRSNTFECKGCKNKTQISQVRL 1152

Query: 1149 PYGAKLLCQELFSMGITLKF 1168
            PY AKLL QEL SM I  + 
Sbjct: 1153 PYAAKLLFQELMSMNIAPRL 1172


>gi|291190610|ref|NP_001167150.1| DNA-directed RNA polymerase II subunit RPB2 [Salmo salar]
 gi|223648370|gb|ACN10943.1| DNA-directed RNA polymerase II subunit RPB2 [Salmo salar]
          Length = 1174

 Score =  617 bits (1590), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 416/1225 (33%), Positives = 622/1225 (50%), Gaps = 137/1225 (11%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPS 74
            ++  +  +  C     S+F+E GLV  Q++S++EFI+  +Q+   D+    +       S
Sbjct: 16   EITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTS 75

Query: 75   KKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVY 134
             + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +     
Sbjct: 76   GEVEDPPRYL-LKFEQIYLSKPTHWERDGAPS-PMMPNEARLRNLTYSAPLYVDI----- 128

Query: 135  TQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDC 188
                 T    K G +Q      L  +     IG+IP+M++S  C + G+      E  +C
Sbjct: 129  -----TKTIIKEGEDQ------LQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNEC 177

Query: 189  DFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVRL 241
              D GGYFII G+EKV +AQE++    ++V        AY  E       + R    + +
Sbjct: 178  PLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSSIWV 237

Query: 242  VDMSK----FEDIKGGEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
              M++     +    G++++S   ++  E+PI I+F ALG  SD++I+  I +  +D  +
Sbjct: 238  SMMARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEM 297

Query: 297  LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
            + ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C
Sbjct: 298  MEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEVLPHVGVSDFC 357

Query: 343  MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                         +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL    + 
Sbjct: 358  -----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 403  HIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISG 462
               +  K +    Q+ +   +    +E  +   I+++GL  + +TG W    K  +  +G
Sbjct: 407  MFKNLLKEIRIYAQKFIDRGKDFN-LELAIKTRIISDGLKYSLATGNWGDVKKAHQARAG 465

Query: 463  IVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKN 522
            +   L R     TL  LRR    +   GK+   R  H + WG +C   TP+G   GLVKN
Sbjct: 466  VSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKN 525

Query: 523  LGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVS 581
            L +   +S  S   PI E L    ME L + +  ++    K+FV+G W+G+ KD    ++
Sbjct: 526  LALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMN 585

Query: 582  ELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVE---------NMGKIKS 631
             LR+ RR+ ++  ++V + RD  + E+RI+ DAGRI RPLL+VE         ++ ++K 
Sbjct: 586  TLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKE 645

Query: 632  LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPI---KFTHCELDMS 688
             E  NY++Q L+  G++E + T EEE    A        D+++K       ++HCE+  S
Sbjct: 646  REYNNYSWQDLVASGVVEYIDTLEEETVMLAM----TPDDLQEKGVAYCSTYSHCEIHPS 701

Query: 689  FLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFR 748
             +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YPQ+PL  
Sbjct: 702  MILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVT 760

Query: 749  TMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSE 808
            T   +            L   EL  G N+IVA+  + GYNQEDS++MNR++++RG FRS 
Sbjct: 761  TRSME-----------YLRFRELPAGINSIVAIAAYTGYNQEDSVIMNRSAVDRGFFRSV 809

Query: 809  HIRSYKAE-----VDNKEMQVK--RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQ 861
              RSYK +      D +E+  K  R +   M        +    D LDDDG    G  + 
Sbjct: 810  FYRSYKEQESKKGFDQEEIFEKPTRETCSGM--------RHAIYDKLDDDGLIAPGVRVS 861

Query: 862  SGDIVIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVV 906
              D++IGK                  +  D S  L+ +E G+V +V+++ N +G  F  +
Sbjct: 862  GEDVIIGKTVTLPETDDELDSTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKI 921

Query: 907  SLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQL 966
             +R VR P +GDKF+S HGQKG  G    QE+ PFT +GI PDI+INPHA PSR T G L
Sbjct: 922  RVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHL 981

Query: 967  LEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGE 1025
            +E   GK   +  KG        ATPF    +V  ++  L   G+   G E LY+G TG 
Sbjct: 982  IECLQGK--VSANKGEIGD----ATPFNDAVNVQKVSNLLSEYGYHLRGNEVLYNGFTGR 1035

Query: 1026 MVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLI 1085
             + S IF+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC I
Sbjct: 1036 KITSQIFLGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQI 1095

Query: 1086 AHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVK 1145
            AHGAA  L ERLF  SD YQ+H+C  C  +A           +     CR C +   I  
Sbjct: 1096 AHGAAQFLRERLFEASDPYQVHVCNLCGLMAI-------ANTRTHTYECRGCRNKTQISL 1148

Query: 1146 ANVPYGAKLLCQELFSMGITLKFDT 1170
              +PY  KLL QEL SM I  +  T
Sbjct: 1149 VRMPYACKLLFQELMSMSIAPRMMT 1173


>gi|327279896|ref|XP_003224691.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Anolis
            carolinensis]
          Length = 1174

 Score =  617 bits (1590), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 429/1242 (34%), Positives = 622/1242 (50%), Gaps = 162/1242 (13%)

Query: 2    DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-D 60
            D DD+  T      DL +E     C     S+F+E GLV  Q++S++EFI+  +Q+   D
Sbjct: 11   DEDDDEITP-----DLWQEA----CWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 61   SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
            +    +       + + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+T
Sbjct: 62   APPIDLQAEAQHATGEVEEPPRYL-LKFEQIYLSKPTHWERDGAPS-PMMPNEARLRNLT 119

Query: 121  YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
            YS+ + V +          T    K G +Q      L  +     IG+IP+M++S  C +
Sbjct: 120  YSAPLYVDI----------TKTVVKEGEDQ------LQTQHQKTFIGKIPIMLRSTYCLL 163

Query: 181  KGVEKGD------CDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR 234
             G+   D      C  D GGYFII G+EKV +AQE++    ++V        AY  E + 
Sbjct: 164  NGLTDRDLCQLNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRS 223

Query: 235  N-------------RLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDK 281
                           ++ R    +K   I G   V ++ ++  E+PI I+F ALG  SD+
Sbjct: 224  CLENSSRPTSTIWVSMLARGGQGAKKSAI-GQRIVATLPYIKQEVPIIIVFRALGFVSDR 282

Query: 282  EIVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKL 327
            +I+  I +  ED  ++ ++  S+ +A      N    F   R A         +KY  ++
Sbjct: 283  DILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEV 342

Query: 328  IKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNK 387
            ++    P    ++ C             +KA FLGYMV  LL A  GRR+ D+RD + NK
Sbjct: 343  LQKEMLPHVGVSDFC-----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNK 391

Query: 388  RLELAGELLERELKVHIAHARKRMAKALQRD--LYGDRTVR-----PIEYYLDASILTNG 440
            RL+LAG LL        A   + M K L ++  +Y  + +       +E  +   I+++G
Sbjct: 392  RLDLAGPLL--------AFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDG 443

Query: 441  LSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHP 500
            L  + +TG W    K  +  +G+   L R     TL  LRR    +   GK+   R  H 
Sbjct: 444  LKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHN 503

Query: 501  SHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGG 559
            + WG IC   TP+G   GLVKNL +   +S  S   PI E L    ME L + +  ++  
Sbjct: 504  TLWGMICPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIAD 563

Query: 560  KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILR 618
              K+FV+G W+G+ KD    ++ LR+ RR+ ++  ++V + RD  + E+RI+ DAGRI R
Sbjct: 564  ATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICR 623

Query: 619  PLLVVE---------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLL 669
            PLL+VE         ++ ++K  E  NY++Q L+  G++E + T EEE    A     + 
Sbjct: 624  PLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLA-----MT 678

Query: 670  KDIEDKKPIKF----THCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPT 725
             D   +K I +    THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   
Sbjct: 679  PDDLQEKGIAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYI 737

Query: 726  TNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHL 785
            TN  +R+DTL+H L+YPQ+PL  T   +            L   EL  G N+IVA+  + 
Sbjct: 738  TNFHVRMDTLAHVLYYPQKPLVTTRSME-----------YLRFRELPAGINSIVAIASYT 786

Query: 786  GYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGR- 844
            GYNQEDS++MNR++++RG FRS   RSYK        Q  ++  D    F K   +  + 
Sbjct: 787  GYNQEDSVIMNRSAVDRGFFRSVFYRSYKE-------QESKKGFDQEEVFEKPTRETCQG 839

Query: 845  -----VDSLDDDGFPFIGANLQSGDIVIGKYAD---------------SGADHSIKLKHT 884
                  D LDDDG    G  +   D++IGK                  +  D S  L+ +
Sbjct: 840  MRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTS 899

Query: 885  ERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQ 944
            E G+V +V+++ N +G  F  + +R VR P +GDKF+S HGQKG  G    QE+ PFT +
Sbjct: 900  ETGIVDQVMVTLNQEGYKFCKIKVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCE 959

Query: 945  GIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITE 1003
            GI PDI+INPHA PSR T G L+E   GK   +  KG        ATPF    +V  I+ 
Sbjct: 960  GITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGEIGD----ATPFNDAVNVQKISN 1013

Query: 1004 QLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQ 1063
             L   G+   G E LY+G TG  + S IFIGPT+YQRL HM +DK+  R  GP+  L RQ
Sbjct: 1014 LLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQ 1073

Query: 1064 PVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVV 1123
            P+  R R GG++FGEMERDC IAHGAA  L ERLF  SD YQ+H+C  C  +A       
Sbjct: 1074 PMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAI------ 1127

Query: 1124 GGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
                +     CR C +   I    +PY  KLL QEL SM I 
Sbjct: 1128 -ANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIA 1168


>gi|57530101|ref|NP_001006448.1| DNA-directed RNA polymerase II subunit RPB2 [Gallus gallus]
 gi|53127025|emb|CAG31004.1| hypothetical protein RCJMB04_1i14 [Gallus gallus]
          Length = 1174

 Score =  616 bits (1589), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 419/1211 (34%), Positives = 613/1211 (50%), Gaps = 151/1211 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPSKKGEGEWRYASMRFGQ 90
            S+F+E GLV  Q++S++EFI+  +Q+   D+    +       + + E   RY  ++F Q
Sbjct: 32   SYFDEEGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHATGEVEEPPRYL-LKFEQ 90

Query: 91   VTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
            + L KP+ +  +G     M P  ARL+N+TYS+ + V +          T    K G +Q
Sbjct: 91   IYLSKPTHWERDGAPS-PMMPNEARLRNLTYSAPLYVDI----------TKTVIKEGEDQ 139

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFIIKGAEKV 204
                  L  +     IG+IP+M++S  C + G+      E  +C  D GGYFII G+EKV
Sbjct: 140  ------LQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKV 193

Query: 205  FVAQEQICLKRLWVSNSMGWTVAYKSENKRN-------------RLIVRLVDMSKFEDIK 251
             +AQE++    ++V        AY  E +                ++ R    +K   I 
Sbjct: 194  LIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAI- 252

Query: 252  GGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA---- 307
            G   V ++ ++  E+PI I+F ALG  SD++I+  I +  ED  ++ ++  S+ +A    
Sbjct: 253  GQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQ 312

Query: 308  -DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQK 357
              N    F   R A         +KY  ++++    P    ++ C             +K
Sbjct: 313  EQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFC-----------ETKK 361

Query: 358  ARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQR 417
            A FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL        A   + M K L +
Sbjct: 362  AYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLL--------AFLFRGMFKNLLK 413

Query: 418  D--LYGDRTVR-----PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRA 470
            +  +Y  + +       +E  +   I+++GL  + +TG W    K  +  +G+   L R 
Sbjct: 414  EVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRL 473

Query: 471  NPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVS 530
                TL  LRR    +   GK+   R  H + WG +C   TP+G   GLVKNL +   +S
Sbjct: 474  TFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS 533

Query: 531  T-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRR 589
              S   PI E L    ME L + +  ++    K+FV+G W+G+ KD    ++ LR+ RR+
Sbjct: 534  VGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQ 593

Query: 590  KEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVE---------NMGKIKSLEGKNYTF 639
             ++  ++V + RD  + E+RI+ DAGRI RPLL+VE         ++ ++K  E  NY++
Sbjct: 594  MDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSW 653

Query: 640  QALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPI---KFTHCELDMSFLLGLSCG 696
            Q L+  G++E + T EEE    A        D+++K       +THCE+  S +LG+   
Sbjct: 654  QDLVASGVVEYIDTLEEETVMLAM----TPDDLQEKGVAYCSTYTHCEIHPSMILGVCAS 709

Query: 697  IIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLG 756
            IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YPQ+PL  T   +   
Sbjct: 710  IIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSME--- 765

Query: 757  KPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAE 816
                     L   EL  G N+IVA+  + GYNQEDS++MNR++++RG FRS   RSYK  
Sbjct: 766  --------YLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKE- 816

Query: 817  VDNKEMQVKRRSSDDMVNFGKIQSKIGR------VDSLDDDGFPFIGANLQSGDIVIGKY 870
                  Q  ++  D    F K   +  +       D LDDDG    G  +   D++IGK 
Sbjct: 817  ------QESKKGYDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKT 870

Query: 871  AD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPC 915
                             +  D S  L+ +E G+V +V+++ N +G  F  + +R VR P 
Sbjct: 871  VTLPENEDELESTNRRFTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQ 930

Query: 916  LGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGI 975
            +GDKF+S HGQKG  G    QE+ PFT +GI PDI+INPHA PSR T G L+E   GK  
Sbjct: 931  IGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGK-- 988

Query: 976  AALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIG 1034
             +  KG        ATPF    +V  I+  L   G+   G E LY+G TG  + S IFIG
Sbjct: 989  VSANKGEIGD----ATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIG 1044

Query: 1035 PTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLH 1094
            PT+YQRL HM +DK+  R  GP+  L RQP+  R R GG++FGEMERDC IAHGAA  L 
Sbjct: 1045 PTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLR 1104

Query: 1095 ERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKL 1154
            ERLF  SD YQ+H+C  C  +A           +     CR C +   I    +PY  KL
Sbjct: 1105 ERLFEASDPYQVHVCNLCGIMAI-------ANTRTHTYECRGCRNKTQISLVRMPYACKL 1157

Query: 1155 LCQELFSMGIT 1165
            L QEL SM I 
Sbjct: 1158 LFQELMSMSIA 1168


>gi|407925273|gb|EKG18288.1| DNA-directed RNA polymerase subunit 2 domain 6 [Macrophomina
            phaseolina MS6]
          Length = 1258

 Score =  616 bits (1588), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 415/1261 (32%), Positives = 628/1261 (49%), Gaps = 152/1261 (12%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVE--PGYDPSKKGEGEWRY 83
            C     SFF E GLV+ QI+SY+EF+KN L    +  G   ++  P  D S       + 
Sbjct: 27   CWTVISSFFEEKGLVAQQIDSYDEFVKNTLPNIVEHMGAITMDHTPPIDESDPDPIIKKR 86

Query: 84   ASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRM--KVKVQFQVYTQKRVT- 140
              + FG+V + +PS    +GG   D+FP  ARL+N+TY++ M   +  +  V  ++ +  
Sbjct: 87   YEVNFGEVKMGRPSL--TDGGVTRDVFPHEARLRNLTYAAAMMSDMSTKTSVARERPIAP 144

Query: 141  ----SDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDF 190
                 +   TG  + + +     +   +  GR+PVM+KS +C ++ +         +C +
Sbjct: 145  SGDMDEDETTGATELVWEVDSQTDKEQVFFGRLPVMLKSYVCGLRNLTDEQLYAHSECPY 204

Query: 191  DHGGYFIIKGAEKVFVAQEQICLKRLWV----SNSMGWTVAYKSENKRNRLIVRLVDMSK 246
            D GGYF+I G+EKV +AQE+     + V     +   W    +S  ++   ++  + +  
Sbjct: 205  DQGGYFVINGSEKVLIAQERSAANIVQVFRKRQSPTPWIAEIRSAVEKGSRLLSSMTLKL 264

Query: 247  FE------DIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNIL 300
            +E      + +G     ++ ++  ++PI I+F ALG+ SD++I++ I F   D  ++  +
Sbjct: 265  YEKPQLWKEGQGCCLYATLPYVKADVPIPIVFRALGIVSDEDIISHICFDKNDNKLMEAI 324

Query: 301  FASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEE-------CMNTYLFPSLHG 353
              SI ++    D      +AL ++ +  +G+    G +  E        +     P +  
Sbjct: 325  RPSIEESVLIQDRV----SALDFIGR--RGSNPSTGGTKRERVKLARDIIQKEFLPHISQ 378

Query: 354  TK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARK 409
            T+    +KA FLGYM+  LLQ + GRR  D+RD F  KRL+LAG LL        A+  +
Sbjct: 379  TEGSETKKAFFLGYMIYRLLQCHLGRRDEDDRDHFGKKRLDLAGPLL--------ANLFR 430

Query: 410  RMAKALQRDLYG-----DRTVRP--IEYYLDASILTNGLSRAFSTGAWSHPFKRTERISG 462
             +   L RD+Y          RP  ++  +    ++NGL  + +TG W    K     +G
Sbjct: 431  SLFLKLTRDVYNYLKKCVEAGRPFSLQSAVKQGTISNGLKYSLATGNWGDQKKAASSKAG 490

Query: 463  IVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKN 522
            +   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLVKN
Sbjct: 491  VSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKN 550

Query: 523  LGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVS 581
            L +   V+  S + PI + +    ME L +          K+FV+G W+GV +D    VS
Sbjct: 551  LSLMCHVTVGSDVTPIQDFMTQRNMELLEEYEPSVSPHATKIFVNGVWVGVHRDPTQLVS 610

Query: 582  ELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE------NMGK------- 628
             +++ RR   L  ++ + RD    E +IF DAGR+ RPL +++      N G        
Sbjct: 611  VVKKLRRDGTLSPEMSLIRDVRDREFKIFTDAGRVCRPLFIIDDNPTSANKGNLVLSREH 670

Query: 629  IKSLEG----------------KNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYL---- 668
            I  LE                 + Y ++ LL  G++E +  EEEE          L    
Sbjct: 671  IDKLEEDQQIDVSGLSDDERDERRYGWKGLLTSGVVEYMDAEEEESAMIVMTPDDLRAHH 730

Query: 669  -----LKDIEDKKP------------------IKFTHCELDMSFLLGLSCGIIPFANHDH 705
                 + D ED++                    ++THCE+  S +LG+   IIPF +H+ 
Sbjct: 731  RARQGIVDEEDEETRLNRDPHERVVPPPNPSVKQYTHCEIHPSMILGICASIIPFPDHNQ 790

Query: 706  ARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHI 765
            + R  YQS     QA+G   TN  +R+DT+ + L+YPQ+PL  T   +            
Sbjct: 791  SPRNTYQS-AMGKQAMGVCLTNYELRMDTMVNVLYYPQKPLATTRSME-----------Y 838

Query: 766  LPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVK 825
            L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   RSY  +     M V 
Sbjct: 839  LRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKKVGMAVV 898

Query: 826  RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH-------- 877
             +    M +   ++ K G  D LDDDG    G  +   DI+IGK A    D         
Sbjct: 899  EQFEKPMRS-DTMRLKHGTYDKLDDDGVVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTK 957

Query: 878  -------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVL 930
                   S  L+ TE G+V +V+L++N DG  F  V  R  + P +GDKF+S HGQKG +
Sbjct: 958  MHIKRDVSTPLRSTENGIVDQVLLTTNSDGLKFVKVRTRTTKVPQIGDKFASRHGQKGTI 1017

Query: 931  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYA 990
            G     E+ PFT +G+ PD++INPHA PSR T   L+E  L K       G   G +  A
Sbjct: 1018 GITYRHEDMPFTREGLTPDLIINPHAIPSRMTIAHLIECLLSK------VGALRGQEGDA 1071

Query: 991  TPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVK 1050
            TPF   +V  ++  L   G+   G E +Y+G TG+ + + +F+GPT+YQRL HM +DK+ 
Sbjct: 1072 TPFTDVTVTQVSSLLREHGYQSRGFEIMYNGHTGKKLTAQVFLGPTYYQRLRHMVDDKIH 1131

Query: 1051 FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICR 1110
             R  GPV  LTRQPV  R R GG++FGEMERDC+I+HGA+A L ERLF +SD+Y++HIC 
Sbjct: 1132 ARARGPVQILTRQPVEGRARDGGLRFGEMERDCMISHGASAFLKERLFEVSDAYRVHICE 1191

Query: 1111 KCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
             C  +  +         K     CR C +   I +  +PY AKLL QEL SM I  +  T
Sbjct: 1192 ICGLMTPIA--CPRSNLKRNQFECRPCKNKTKIAQIYIPYAAKLLFQELASMNIASRMYT 1249

Query: 1171 E 1171
            +
Sbjct: 1250 K 1250


>gi|392580422|gb|EIW73549.1| hypothetical protein TREMEDRAFT_70991 [Tremella mesenterica DSM 1558]
          Length = 1214

 Score =  616 bits (1588), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 417/1227 (33%), Positives = 630/1227 (51%), Gaps = 133/1227 (10%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            S+F   GLV  Q+ S+NEFI+N LQ+  D     I++     + K   E R   +RFGQ+
Sbjct: 26   SYFEGKGLVRQQLESFNEFIENTLQEIVDENPLIILDQHAQFTGKEGDELRRHQLRFGQI 85

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             L +P+    +G     MFP+ ARL+N+TYS+ + V+++ + +       D   T  +  
Sbjct: 86   YLARPTTTESDG-IAAPMFPQEARLRNLTYSAPLYVEIERRTFVAAGADEDPLDTEWQPL 144

Query: 152  IQ---KEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAE 202
            +    + V+  E T   IG++PVMV+S  C ++ +         +C +D GGYF++KG+E
Sbjct: 145  LDAYGEPVV--EKTKAFIGKVPVMVRSHFCHLENLPDESLYHLKECPYDSGGYFVVKGSE 202

Query: 203  KVFVAQEQICLKRLWV---SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            KV +AQE++   +++V    +   +     S+ +R   +    ++  +    GG     +
Sbjct: 203  KVLIAQERMAANQVYVFRKQSPYTYFATVTSQMERGGKMPSETEVRMYPRSSGGTTGSVI 262

Query: 260  Y----FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFR 315
            +    ++   IPI I+F ALG+ +D +I+  I F   D  +L +L   + +A       +
Sbjct: 263  HVRLPYIKVPIPIVIVFRALGIIADSDILEHICFNMGDTQMLEMLRPCVEEAF----AIQ 318

Query: 316  KGRNALKYVDKLIK---GTTFPPGESTEECMNTYLFPSLHGTK----QKARFLGYMVKCL 368
                AL ++ +      GT         + +     P +  ++    +KA FLGYM+  L
Sbjct: 319  SRETALDFIGRRHNKDIGTRMQRQLVAFDILQKEFLPHVSVSEGFESKKAYFLGYMIHRL 378

Query: 369  LQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPI 428
              A   RR  D+RD F NKR++LAG LL    +    +  KR+ + L   +  +R     
Sbjct: 379  CSAALNRRDLDDRDHFGNKRMDLAGPLLANLFRGLFKNLTKRVHRHLTTCIEKNRPFVFS 438

Query: 429  EYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQY 488
            E  L  SI+T+G   A +TG W      T R  G+   L R     TL  LRRT   +  
Sbjct: 439  EA-LQPSIITDGFRYAIATGNWG---TGTNRRVGVSQVLNRYTYASTLSHLRRTNTPIDR 494

Query: 489  TGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGME 547
              K    R  H +HWG +C   TP+G  CGLVKNL +   +S  S   P+ E L   G+E
Sbjct: 495  GSKATKPRQLHNTHWGMVCPAETPEGAACGLVKNLALLSYISVGSYAAPVMEFLEEWGLE 554

Query: 548  KLADDASYSLG-GKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSE 606
               D + +    G  KVFV+G W+GV +++ +  + L + RR  +L  +V I RD  + E
Sbjct: 555  ---DQSEFQHNPGATKVFVNGVWMGVHRNAGTLYANLLQMRRGGQLKHEVSIVRDIRERE 611

Query: 607  VRIFMDAGRILRPLLVVENMG---KIKS---------LEG-----KNYTFQALLDHGIIE 649
            +R+  DAGR+ RPLL+V+      KIK          LEG         +  LL+ G+IE
Sbjct: 612  LRLCTDAGRVCRPLLIVDQRTQSLKIKKSHIERTEILLEGGEDIATGSAWIELLNDGVIE 671

Query: 650  LVGTEEEE------------DCCTAWGIKYLLK-----DIEDKKPI----------KFTH 682
             V   EEE            +  TA G   L++     +++   P            +TH
Sbjct: 672  YVDAAEEETILIAMTSEDLVNARTASGKDELVRQRAAHNLDHFDPAARVKSTNWSQNYTH 731

Query: 683  CELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYP 742
             E+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DT+++ L+YP
Sbjct: 732  MEIHPSMILGVCGSIIPFPDHNQSPRNTYQSAM-GKQAMGVHLTNYQLRMDTMANILYYP 790

Query: 743  QRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLER 802
            Q+PL  T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++S++R
Sbjct: 791  QKPLATTRSME-----------YLKFSELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDR 839

Query: 803  GMFRSEHIRSYK-AEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVD---SLDDDGFPFIGA 858
            G+FRS + RSY  AE      +V+     D  +   ++ K+G  D    LD DG      
Sbjct: 840  GLFRSLYYRSYTDAEKMTGMEKVETIEKPDRKD--TLRMKMGSSDRYAKLDIDGLIAPAT 897

Query: 859  NLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNF 903
            N+   DI+IGK A                +  D S  LK TE+G+V +V+LS+N DG  F
Sbjct: 898  NVNGDDIIIGKTAPIPEESEELGQRTSLHTKRDVSTPLKSTEQGVVDQVMLSTNGDGHKF 957

Query: 904  SVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTP 963
              + +R  R P +GDKF+S HGQKG +G    QE+ PFT +GI PDI+INPHA PSR T 
Sbjct: 958  VKIRIRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTI 1017

Query: 964  GQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRT 1023
            G L+E  L K          +G +  ATPF   +V+ +++ L + G+   G E +Y G T
Sbjct: 1018 GHLVECLLSK------LSTMTGSEGDATPFTELTVEKVSKFLRQRGYQSRGLEVMYHGHT 1071

Query: 1024 GEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDC 1083
            G  +++ I+ GPT+YQRL HM +DK+  R  GP+  LTRQPV  R R GG++FGEMERDC
Sbjct: 1072 GRKLQAQIYFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEMERDC 1131

Query: 1084 LIAHGAAANLHERLFTLSDSYQMHICRKC--KNVANVIQRVVGGGRKVRGPYCRICDSGD 1141
            +I+HG AA L ER++  SD +++H+C +C    +AN+         K +  +C +C +  
Sbjct: 1132 MISHGIAAFLKERMYDSSDGFRVHVCDQCGLMAIANL---------KKQEFHCSVCRNST 1182

Query: 1142 DIVKANVPYGAKLLCQELFSMGITLKF 1168
             I +  +PY AKLL QEL +M I ++ 
Sbjct: 1183 QISQIYIPYAAKLLFQELQAMNIAVRM 1209


>gi|355687402|gb|EHH25986.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
          Length = 1174

 Score =  616 bits (1588), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 428/1241 (34%), Positives = 622/1241 (50%), Gaps = 160/1241 (12%)

Query: 2    DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-D 60
            D DD+  T      DL +E     C     S+F+E GLV  Q++S++EFI+  +Q+   D
Sbjct: 11   DEDDDEITP-----DLWQEA----CWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 61   SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
            +    +       S + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+T
Sbjct: 62   APPIDLQAEAQHASGEVEEPPRYL-LKFEQIYLSKPTHWERDGAPS-PMMPNEARLRNLT 119

Query: 121  YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
            YS+ + V +          T    K G EQ      L  +     IG+IP+M++S  C +
Sbjct: 120  YSAPLYVDI----------TKTVIKEGEEQ------LQTQHQKTFIGKIPIMLRSTYCLL 163

Query: 181  KGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR 234
             G+      E  +C  D GGYFII G+EKV +AQE++    ++V        AY  E + 
Sbjct: 164  NGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRS 223

Query: 235  N-------------RLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDK 281
                           ++ R    +K   I G   V ++ ++  E+PI I+F ALG  SD+
Sbjct: 224  CLENSSRPTSTIWVSMLARGGQGAKKSAI-GQRIVATLPYIKQEVPIIIVFRALGFVSDR 282

Query: 282  EIVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKL 327
            +I+  I +  ED  ++ ++  S+ +A      N    F   R A         +KY  ++
Sbjct: 283  DILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEV 342

Query: 328  IKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNK 387
            ++    P    ++ C             +KA FLGYMV  LL A  GRR+ D+RD + NK
Sbjct: 343  LQKEMLPHVGVSDFC-----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNK 391

Query: 388  RLELAGELLERELKVHIAHARKRMAKALQRD--LYGDRTVR-----PIEYYLDASILTNG 440
            RL+LAG LL        A   + M K L ++  +Y  + +       +E  +   I+++G
Sbjct: 392  RLDLAGPLL--------AFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDG 443

Query: 441  LSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHP 500
            L  + +TG W    K  +  +G+   L R     TL  LRR    +   GK+   R  H 
Sbjct: 444  LKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHN 503

Query: 501  SHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGG 559
            + WG +C   TP+G   GLVKNL +   +S  S   PI E L    ME L + +  ++  
Sbjct: 504  TLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIAD 563

Query: 560  KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILR 618
              K+FV+G W+G+ KD    ++ LR+ RR+ ++  ++V + RD  + E+RI+ DAGRI R
Sbjct: 564  ATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICR 623

Query: 619  PLLVVE---------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLL 669
            PLL+VE         ++ ++K  E K   +Q L+  G++E + T EEE    A       
Sbjct: 624  PLLIVEKQKLLLKKRHIDQLKEREYKTTGWQDLVASGVVEYIDTLEEETVMLAM----TP 679

Query: 670  KDIEDKKPI---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTT 726
             D+++K+      +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   T
Sbjct: 680  DDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYIT 738

Query: 727  NPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLG 786
            N  +R+DTL+H L+YPQ+PL  T   +            L   EL  G N+IVA+  + G
Sbjct: 739  NFHVRMDTLAHVLYYPQKPLVTTRSME-----------YLRFRELPAGINSIVAIASYTG 787

Query: 787  YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGR-- 844
            YNQEDS++MNR++++RG FRS   RSYK        Q  ++  D    F K   +  +  
Sbjct: 788  YNQEDSVIMNRSAVDRGFFRSVFYRSYKE-------QESKKGFDQEEVFEKPTRETCQGM 840

Query: 845  ----VDSLDDDGFPFIGANLQSGDIVIGKYAD---------------SGADHSIKLKHTE 885
                 D LDDDG    G  +   D++IGK                  +  D S  L+ +E
Sbjct: 841  RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE 900

Query: 886  RGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQG 945
             G+V +V+++ N +G  F  + +R VR P +GDKF+S HGQKG  G    QE+ PFT +G
Sbjct: 901  TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG 960

Query: 946  IVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQ 1004
            I PDI+INPHA PSR T G L+E   GK   +  KG        ATPF    +V  I+  
Sbjct: 961  ITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGEIGD----ATPFNDAVNVQKISNL 1014

Query: 1005 LHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQP 1064
            L   G+   G E LY+G TG  + S IFIGPT+YQRL HM +DK+  R  GP+  L RQP
Sbjct: 1015 LSDYGYHLRGKEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQP 1074

Query: 1065 VADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVG 1124
            +  R R GG++FGEMERDC IAHGAA  L ERLF  SD YQ+H+C  C  +A        
Sbjct: 1075 MEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAI------- 1127

Query: 1125 GGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
               +     CR C +   I    +PY  KLL QEL SM I 
Sbjct: 1128 ANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIA 1168


>gi|358395023|gb|EHK44416.1| hypothetical protein TRIATDRAFT_151043 [Trichoderma atroviride IMI
            206040]
          Length = 1261

 Score =  615 bits (1587), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 428/1268 (33%), Positives = 650/1268 (51%), Gaps = 162/1268 (12%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEG-EWRYA 84
            C     SFF   GLVS Q +S++EF +  +Q   + +    ++    PS  G     R  
Sbjct: 25   CWTVISSFFETKGLVSQQTDSFDEFTQTTIQDLVNEYSTITLDQPNPPSPPGRTIALRRY 84

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQV--YTQKRVTSD 142
             ++FG V + +P+  +   G    + P   R +N+TY+S + +K+  +V    ++ V   
Sbjct: 85   EIKFGSVMVSRPTI-SETDGTVTSLLPYECRDRNLTYASPLYIKITKKVSAAVEREVPLH 143

Query: 143  KFKTGR-EQYIQKEV-------------------LSDETTNII-IGRIPVMVKSDLCWMK 181
            +    + EQY +                       SD+  +++ +G++P+MVKS +C + 
Sbjct: 144  EMDDAQQEQYARTGENPTKLEWEEEENGEDDNLGKSDDWKDMVFVGKLPIMVKSKICHLS 203

Query: 182  GVEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKS 230
              +        +C +D GGYF+I G+EKV +AQE+     + V      ++  +T   +S
Sbjct: 204  REQDDSLFLVNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSAYTYTAEIRS 263

Query: 231  E-NKRNRLI--VRLVDMSKFEDIKGG---EKVLSVYFLSTEIPIWILFFALGVSSDKEIV 284
               K +RLI  + L    K +  +GG       ++ F+ +++P+ I+F ALGV SD++I+
Sbjct: 264  ALEKGSRLISSMMLKLYGKGDSARGGFGQTIHTTLPFVKSDLPVAIVFRALGVVSDEDIL 323

Query: 285  NLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTE---- 340
            N I +   D  +L +L   I +A   C + R+   AL ++ K  +G     G   E    
Sbjct: 324  NHICYDRNDSQMLEMLRPCIEEA--FCVQDRE--VALDFIGK--RGNRDQAGLGREKRVR 377

Query: 341  ---ECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAG 393
               + +     P +  T+    +KA FLGYMV  LLQ   GRR+ D+RD F  KRL+LAG
Sbjct: 378  VAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLDLAG 437

Query: 394  ELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHP 453
             LL +  +  +      +A  L+R + G+R    +   +    L+NGL  + +TG W   
Sbjct: 438  PLLAKLFRGIMRRMNTELANYLRRCVEGNRHFN-LAVGIKPGTLSNGLKYSLATGNWGDQ 496

Query: 454  FKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPD 513
             K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+
Sbjct: 497  KKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPE 556

Query: 514  GENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGV 572
            G+ CGLVKNL +   VS  S  EP+ E + N GME + +          K+FV+G W+G+
Sbjct: 557  GQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVEEYEPLRYPHATKIFVNGVWVGI 616

Query: 573  CKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE-------- 624
             +D    V+++   RR+  L  +V + R+    E +IF DAGR++RP+  V+        
Sbjct: 617  HQDPKHLVNQVLDTRRKSYLQYEVSLIREIRDQEFKIFSDAGRVMRPVFTVQQEDDPETG 676

Query: 625  -NMGKI---KSLEGKNYTFQA--------------LLDHGIIELVGTEEEED---CCTAW 663
             N G +   K L  +    QA              L+  G +E +  EEEE    C T  
Sbjct: 677  INKGHLVLTKDLVNRLAKEQAEPPEDPSMKLGWEGLIRAGAVEYLDAEEEETSMICMTPE 736

Query: 664  GIK-YLLK--------DIED--KKPIK---------FTHCELDMSFLLGLSCGIIPFANH 703
             ++ Y L+        DI D   K +K         +THCE+  S +LG+   IIPF +H
Sbjct: 737  DLELYRLQKAGIATDEDIGDDPNKRLKTKTNPTTHMYTHCEIHPSMILGICASIIPFPDH 796

Query: 704  DHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHN 763
            + + R  YQS     QA+GF  TN S R+DT+++ L+YPQ+PL  T   +          
Sbjct: 797  NQSPRNTYQS-AMGKQAMGFFLTNYSRRMDTMANILYYPQKPLGTTRSME---------- 845

Query: 764  HILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQ 823
              L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   RSY     ++E +
Sbjct: 846  -FLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYS----DQEKK 900

Query: 824  VKRRSS---DDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA----- 875
            V    +   +   +   ++ K G  D LD+DG    G  +   DI+IGK A   A     
Sbjct: 901  VGLNYTEVFEKPFHQNTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDAETQDL 960

Query: 876  ----------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHG 925
                      D S  L+ TE G+V +V+++ N D   +  V +R  + P +GDKF+S HG
Sbjct: 961  GTRTTMHQRRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHG 1020

Query: 926  QKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSG 985
            QKG +G    QE+ PFT +G+ PDI+INPHA PSR T   L+E  L K ++ L      G
Sbjct: 1021 QKGTIGVTYRQEDMPFTREGLTPDIIINPHAIPSRMTIAHLIECLLSK-VSTL-----EG 1074

Query: 986  LKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMS 1045
            ++  ATPF   +VD+++E L + G+   G E +Y+G TG  +R+ +F GPT+YQRL HM 
Sbjct: 1075 MEGDATPFTDVTVDSVSELLRKHGYQSRGFEIMYNGHTGRKLRAQVFFGPTYYQRLRHMV 1134

Query: 1046 EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQ 1105
            +DK+  R  GPV  +TRQPV  R R GG++FGEMERDC+IAHGAA+ L ERLF +SD+++
Sbjct: 1135 DDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFR 1194

Query: 1106 MHICRKC---KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSM 1162
            +HIC  C     +AN+ ++            CR C +   I + ++PY AKLL QEL SM
Sbjct: 1195 VHICEICGLMTPIANLSKQSFE---------CRPCKNKTKIAQIHIPYAAKLLFQELQSM 1245

Query: 1163 GITLKFDT 1170
             I  +  T
Sbjct: 1246 NIAARMYT 1253


>gi|324120654|dbj|BAJ78718.1| RNA polymerase II second largest subunit [Uroleucon
            nigrotuberculatum]
          Length = 1177

 Score =  615 bits (1586), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 418/1230 (33%), Positives = 631/1230 (51%), Gaps = 152/1230 (12%)

Query: 17   LGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKK 76
            +  E  +  C     S+F+E GLV  Q++S++EFI+  +Q+  +   +  ++     S+ 
Sbjct: 18   ISSELWQEACWIVINSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIELQA---ESQH 74

Query: 77   GEGEWRYAS---MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQV 133
              GE    +   ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +    
Sbjct: 75   THGEIDTPTKYQIKFEQIYLSKPTHWEKDGSPS-PMMPNEARLRNLTYSAPLYVDI---- 129

Query: 134  YTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGD 187
                  T    K G E  + +   S       IG+IP+M++S  C + G+      E  +
Sbjct: 130  ------TKTVIKDGEEPVVTQHSKS------FIGKIPIMLRSTYCLLFGLNDRDLTELNE 177

Query: 188  CDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVR 240
            C  D GGYFII G+EKV +AQE++    ++V +      A+K+E       + R    + 
Sbjct: 178  CPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAFKAEIRSCLEHSSRPTSTLW 237

Query: 241  LVDMSKF-EDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCS 295
            +  M++  + IK    G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  
Sbjct: 238  VNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPE 297

Query: 296  ILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEE 341
            ++ ++  S+ +A      N    F   R A         +KY  ++++    P    ++ 
Sbjct: 298  MMEMVKPSLDEAFVIQEQNVALNFIGSRGARPGVTKDKRIKYAREILQKEMLPHVGVSDF 357

Query: 342  CMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELK 401
            C             +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL     
Sbjct: 358  C-----------ETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLL----- 401

Query: 402  VHIAHARKRMAKALQRD--LYGDRTV-RPIEYYLDASI----LTNGLSRAFSTGAWSHPF 454
               A   + + K L ++  +Y  + + R  ++ LD +I    +T+GL  + +TG W    
Sbjct: 402  ---AFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLDLAIKTKLITDGLRYSLATGNWGDQK 458

Query: 455  KRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDG 514
            K  +  +G+   L R     TL  LRR    +   GK+   R  H + WG +C   TP+G
Sbjct: 459  KAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEG 518

Query: 515  ENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVC 573
               GLVKNL +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ 
Sbjct: 519  AAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIVDATKIFVNGCWVGIH 578

Query: 574  KDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------- 625
            +D    +  LR+ RR+ ++  ++V I RD    E+RI+ DAGRI RPLL+VEN       
Sbjct: 579  RDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIYTDAGRICRPLLIVENGKLLLKK 638

Query: 626  --MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHC 683
              +  +K  +  NY +Q L+ +G++E + T EEE    A     L ++ E      +THC
Sbjct: 639  RHIDSLKERDYNNYGWQVLVSNGVVEYIDTLEEETTMIAMSPDDLRQEKEYAYCTTYTHC 698

Query: 684  ELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQ 743
            E+  + +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP 
Sbjct: 699  EIHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPH 757

Query: 744  RPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERG 803
            +PL  T   +            L   EL  G N+IVA+  + GYNQEDS+++N +++ERG
Sbjct: 758  KPLVTTRSME-----------YLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERG 806

Query: 804  MFRSEHIRSYKAEV-----DNKEM--QVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFI 856
             FRS   RSYK        D +E+  +  R+S   M N           D LDDDG    
Sbjct: 807  FFRSVFFRSYKDSESKRIGDQEEVFEKPNRQSCQGMRN--------AIYDKLDDDGIISP 858

Query: 857  GANLQSGDIVIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGK 901
            G  +   D++IGK                  S  D S  L+++E G++ +V+L+ N +G 
Sbjct: 859  GLRVSGDDVIIGKTMTLPDNEDELEGTTKKYSKRDCSTFLRNSETGLIDQVLLTLNSEGY 918

Query: 902  NFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQ 961
             F  + +R  R P +GDKF+S HGQKG  G    QE+ PFT +GI PDI+INPHA PSR 
Sbjct: 919  KFCKIRVRSERIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRM 978

Query: 962  TPGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYD 1020
            T G L+E   GK   +  KG        ATPF    +V  I+  L   G+   G E +Y+
Sbjct: 979  TIGHLIECLQGK--VSANKGEIGD----ATPFNDAVNVQKISTLLQEYGYQLRGNEVMYN 1032

Query: 1021 GRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEME 1080
            G +G  + + +F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEME
Sbjct: 1033 GFSGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEME 1092

Query: 1081 RDCLIAHGAAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICD 1138
            RDC IAHGAA  L ERLF +SD Y++HIC  C    +AN+               C+ C 
Sbjct: 1093 RDCQIAHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRNNTFE---------CKGCK 1143

Query: 1139 SGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
            +   I +  +PY AKLL QEL SM I  + 
Sbjct: 1144 NKTQISQVKLPYAAKLLFQELMSMNIAPRL 1173


>gi|196009726|ref|XP_002114728.1| DNA directed RNA polymerase II polypeptide B [Trichoplax adhaerens]
 gi|190582790|gb|EDV22862.1| DNA directed RNA polymerase II polypeptide B [Trichoplax adhaerens]
          Length = 1196

 Score =  615 bits (1586), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 422/1229 (34%), Positives = 625/1229 (50%), Gaps = 142/1229 (11%)

Query: 2    DSDDNGFTD-PTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFD 60
            D D    TD P    ++  +  +  C     ++FNE GLV  Q++S++EFI+  +Q+  +
Sbjct: 3    DVDSYDLTDQPIDDDEIETDLWQEACWVVINAYFNEKGLVRQQLDSFDEFIQMSVQRIVE 62

Query: 61   SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
               +  ++         E +     ++F Q+ L KP+F+  +G     M    ARL+N+T
Sbjct: 63   DSPQIDIQGETQHHSSEEQQSVRYQLKFDQIYLSKPTFWEKDGSPT-PMMSNQARLRNLT 121

Query: 121  YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
            YS+ + V              D  KT  +   + EV     T   IG+IP+M++S  C +
Sbjct: 122  YSAPLYV--------------DITKTITKGNNEPEVKCHPKT--FIGKIPIMLRSTYCLL 165

Query: 181  KGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYK----- 229
              +      E  +C  D GGYFII G+EKV +AQE++    ++V        AY      
Sbjct: 166  HNMADHALTELNECPLDVGGYFIINGSEKVLIAQEKMASNTVYVFQKKESKYAYVAEIRS 225

Query: 230  -SENKRNRLIVRLVDM------SKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKE 282
             +EN         V M      +  + + G + V ++ +++ EIPI ++F ALG  +D++
Sbjct: 226  VTENSSRPTSTLWVSMLARGGGTSKKSVIGQKIVAAIPYVNQEIPIMVVFRALGFVADRD 285

Query: 283  IVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLI 328
            I+  I +  +D  ++ ++  S+ +A      N    +   R +         +KY  +++
Sbjct: 286  ILEHIIYDFDDPELMEMVKPSLDEAFVIQEQNVALNYIGSRGSRSGVTKEKRIKYAREIL 345

Query: 329  KGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKR 388
            +    P    ++ C             +KA FLGYMV  LL    GRR+ D+RD + NKR
Sbjct: 346  QKEMLPHVGISDYC-----------ETKKAYFLGYMVHRLLLTALGRREVDDRDHYGNKR 394

Query: 389  LELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTG 448
            L      L +E+K++   A+K +     RD         +E  +   I+T+GL  + +TG
Sbjct: 395  L---FRNLLKEVKMY---AQKFVDNG--RDF-------NLELAIKTKIITDGLRYSLATG 439

Query: 449  AWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICF 508
             W    K  +  +G+   L R   + TL  LRR    +   GK+   R  H +HWG IC 
Sbjct: 440  NWGDQKKAHQSRAGVSQVLNRLTFVSTLSHLRRLNSPIGRDGKLARPRQLHNTHWGMICP 499

Query: 509  LSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDG 567
              TP+G+  GLVKNL +   +S  S   PI E L    ME L + +  +L    K+FV+G
Sbjct: 500  AETPEGQAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEVSHSALASATKIFVNG 559

Query: 568  DWIGVCKDSLSFVSELRRKRRRKE-LPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENM 626
             W+G+ +D    +S LR+ RR+ + + ++V + RD    E+RI+ DAGRI RPLL+VEN 
Sbjct: 560  CWVGIHRDPEQLMSTLRKLRRQMDVIVSEVSMVRDIRDREIRIYTDAGRICRPLLIVENQ 619

Query: 627  ------GKIKSLEGKN----YTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKK 676
                    I+S++  +    + +Q L+ +GI+E V T EEE    A    YL   +   +
Sbjct: 620  KLVLKKNHIESMKTADDYEVFGWQDLIANGIVEYVDTLEEETVMIAMTPDYLTAGVNYCR 679

Query: 677  PIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLS 736
               +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G  TTN  +R+DTL+
Sbjct: 680  --TYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYTTNFHVRMDTLA 736

Query: 737  HQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMN 796
            H L+YPQ+PL  T   +            L   EL  G N IVA+  + GYNQEDS++MN
Sbjct: 737  HVLYYPQKPLVTTRSME-----------YLRFRELPAGINTIVAIASYTGYNQEDSIIMN 785

Query: 797  RASLERGMFRSEHIRSYKAEVD----NKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDG 852
            R +++RG+FRS   RSY+ +      N E   ++ S +               D LDDDG
Sbjct: 786  RGAIDRGLFRSVFYRSYRDQESSGDFNSEEIFEKPSKETCSGMHN-----AMYDKLDDDG 840

Query: 853  FPFIGANLQSGDIVIGKYA----DSGA-----------DHSIKLKHTERGMVQKVVLSSN 897
                G  +  GDIVIGK A    D+ A           D S  L+ +E G+V +V+L+ +
Sbjct: 841  LVAPGTRVSGGDIVIGKTALLPEDADALGDTNKRFVKRDASTGLRSSESGIVDQVLLTVS 900

Query: 898  DDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAF 957
             +G  F+ V +R VR P +GDKF+S HGQKG  G    QE+ PFT +GI PDI+INPHA 
Sbjct: 901  QEGYKFTKVRVRSVRIPQIGDKFASRHGQKGTCGITYRQEDMPFTCEGITPDIIINPHAI 960

Query: 958  PSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFA-TPSVDAITEQLHRAGFSKWGTE 1016
            PSR T G L+E   GK   +  KG        ATPF  T +V  I+  L   G+   G E
Sbjct: 961  PSRMTIGHLIECLQGK--VSANKGEIGD----ATPFNDTLTVQKISSLLSDYGYHLRGNE 1014

Query: 1017 RLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKF 1076
             LY+G TG  + + +F+GPT+YQRL HM +DK+  R  GP+  LTRQP+  R R GG++F
Sbjct: 1015 VLYNGFTGRKLNTQVFLGPTYYQRLKHMVDDKIHARARGPLQNLTRQPMQGRARDGGLRF 1074

Query: 1077 GEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPY-CR 1135
            GEMERDC I+HGAA  L ERL+  SD Y +H+C  C  VA    R           Y C+
Sbjct: 1075 GEMERDCQISHGAAQFLRERLYDASDPYIVHMCNLCGLVAVANLR--------NDTYECK 1126

Query: 1136 ICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
             C +   I +  +PY  KLL QEL SM +
Sbjct: 1127 GCRNKTRISQVRIPYACKLLFQELMSMSL 1155


>gi|452843951|gb|EME45885.1| hypothetical protein DOTSEDRAFT_42537 [Dothistroma septosporum NZE10]
          Length = 1260

 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 417/1264 (32%), Positives = 633/1264 (50%), Gaps = 162/1264 (12%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGE---WR 82
            C     SFF+  GLVS Q++S++EF    +Q+        +++       +G       +
Sbjct: 32   CWTVIHSFFDAKGLVSQQLDSFDEFASTTMQEIVSETAPIVIDQNIASEDEGSNMPIIKK 91

Query: 83   YASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSR--MKVKVQFQVYTQKRVT 140
               +    VT+ + +   G+G     +FP  +RL+N+TY+S   + +  + ++  ++ V 
Sbjct: 92   RIELHLQDVTISQAAMTDGDGVTRA-LFPHESRLRNLTYASPIFLSITKKQKLCRERSVG 150

Query: 141  SDKFKTG------------REQYIQKEVLSDETT-NIIIGRIPVMVKSDLCWMKGVEKGD 187
                +TG               + +     DET  +I IG++P+M+KS +C ++   + +
Sbjct: 151  GYLDETGYWNDPPDFDGQTELHWEEDPDHPDETQGDIFIGKLPIMLKSKICALRNRSEQE 210

Query: 188  ------CDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-----NKRNR 236
                  C FD GGYFII G+EKV +AQE+     + V    G      +E      K  R
Sbjct: 211  LYAFQECPFDQGGYFIINGSEKVLIAQERSAANIVQVFKKKGTNTPVVAEIRSAIEKGTR 270

Query: 237  LI----VRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCE 292
            LI    ++L   S   +  G    +SV ++ ++IPI I+F ALGV SD++I+N I  +  
Sbjct: 271  LISSMQLKLYKQSANSNAHGQTIKVSVPYIKSDIPIAIVFRALGVVSDEDILNHI-CSKS 329

Query: 293  DCSILNILFAS------IHDADNKCDEF-RKGRNA------LKYVDKLIKGTTFPPGEST 339
            D  +L  L         I D D+  D   R+G+        ++Y   +++   F P  S 
Sbjct: 330  DTRMLEYLKPCLEEAFVIQDRDSALDHIGRRGQQQGTKERRIRYARDIMQ-KEFLPHISQ 388

Query: 340  EECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERE 399
            EE   T          +KA FLGYMV  LLQ   GR + D+RD F  KRL+LAG L+ + 
Sbjct: 389  EEGSET----------KKAFFLGYMVNRLLQCALGRTEEDDRDHFGKKRLDLAGPLMAQV 438

Query: 400  LKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTER 459
             ++      K M   L R + G R    I   + ++I+T+GL    +TG W    K    
Sbjct: 439  FRLKFQQLVKDMKTYLHRCIEGGREFN-IALAIKSNIITSGLRYCLATGNWGDQKKAASA 497

Query: 460  ISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGL 519
             +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGL
Sbjct: 498  KAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGL 557

Query: 520  VKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLS 578
            VKNL +   V+  +  EP+ + +   GM+ L +          K+F++G WIGV KD+  
Sbjct: 558  VKNLSLMCYVTVGTPAEPLIDFMRQRGMDLLEEYDPVLNPKATKIFLNGTWIGVHKDAGG 617

Query: 579  FVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK---------- 628
              + LR  RR+  +  +V I RD  + E++IF D GR+ RPL VVEN  K          
Sbjct: 618  LTNTLRGLRRKGVVSFEVTIIRDVREREIKIFTDCGRVCRPLFVVENDPKSTNNGNLVLQ 677

Query: 629  -------------IKSLEG--------KNYTFQALLDHGIIELVGTEEEEDCCTAWGIKY 667
                         +  L+G        K + ++ L+D G++E +  EEEE       I  
Sbjct: 678  REHCQRLADDQNVLAELQGVSEEERETKIFGWKGLIDKGVVEYLDAEEEETAM----IIM 733

Query: 668  LLKDIEDKKPIK--------------------------FTHCELDMSFLLGLSCGIIPFA 701
              +D+E+ K ++                          +THCE+  + +LG+   IIPF 
Sbjct: 734  TPEDLEEHKLMRQGVQMDDTRADPHRRIKNKPNPYVRTWTHCEIHPAMILGICASIIPFP 793

Query: 702  NHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYG 761
            +H+ + R  YQS     QA+G   TN + R+DT+++ L+YPQ+PL  T   +        
Sbjct: 794  DHNQSPRNTYQS-AMGKQAMGVTLTNYNTRMDTMANVLYYPQKPLATTRSME-------- 844

Query: 762  HNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKE 821
                L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   RSY  +     
Sbjct: 845  ---YLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDQEKRVG 901

Query: 822  MQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---------- 871
            M V   + +  V    ++ K G  D LD+DG    G+ +   DI+IGK A          
Sbjct: 902  MSVVE-AFEKPVRADTMRMKKGTYDKLDEDGIITPGSRVSGEDILIGKTAPMPPDAEELG 960

Query: 872  -----DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQ 926
                  +  D S  L+ TE G++ +V++++N +G  F  V  R  + P +GDKF+S HGQ
Sbjct: 961  QRTTAHTKRDVSTPLRSTENGVIDQVLVTTNTEGLRFVKVRTRVTKVPQIGDKFASRHGQ 1020

Query: 927  KGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGL 986
            KG +G    QE+ PFT  G+ PDI+INPHA PSR T   L+E  L K       G  +G 
Sbjct: 1021 KGTVGITYRQEDMPFTADGLTPDIIINPHAIPSRMTIAHLIECLLSK------VGALNGQ 1074

Query: 987  KRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSE 1046
            +  ATPF   +V +++E L   GF + G E +Y+G TG  + + +F+GPT+YQRL HM +
Sbjct: 1075 EGDATPFTDVTVTSVSEILASHGFQQRGFEVMYNGHTGRKLNAQVFLGPTYYQRLRHMVD 1134

Query: 1047 DKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQM 1106
            DK+  R  GP+  LTRQPV  R R GG++FGEMERDC+IAHGA++ L ERL  +SD++++
Sbjct: 1135 DKIHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGASSFLKERLLDVSDAFRV 1194

Query: 1107 HICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITL 1166
            H+C  C  +  +         K +   CR C +   I +  +PY AKLL QEL +M +  
Sbjct: 1195 HVCEICGLMTPI------ASLKKQQFECRPCKNKTRIAQIIIPYAAKLLFQELAAMNVAT 1248

Query: 1167 KFDT 1170
            +  T
Sbjct: 1249 RMFT 1252


>gi|302892877|ref|XP_003045320.1| hypothetical protein NECHADRAFT_70495 [Nectria haematococca mpVI
            77-13-4]
 gi|256726245|gb|EEU39607.1| hypothetical protein NECHADRAFT_70495 [Nectria haematococca mpVI
            77-13-4]
          Length = 1261

 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 425/1267 (33%), Positives = 639/1267 (50%), Gaps = 161/1267 (12%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEG-EWRYA 84
            C     SFF   GLVS Q +S++EF +  +Q   + +    ++    PS  G     R  
Sbjct: 26   CWTVISSFFESKGLVSQQTDSFDEFTQTTIQDLVNEYSVISLDQPNPPSPPGVSIALRRY 85

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKV--QFQVYTQKRV--- 139
             ++FG V + +P+  +   G    + P   R +N+TY+S + +K+  +  V  +K V   
Sbjct: 86   EIKFGSVMVSRPTI-SETDGTVTSLLPYECRDRNLTYASPLYIKITKKVSVAVEKEVPLH 144

Query: 140  ------TSDKFKTGR---------EQYIQKEVLSDETTN--IIIGRIPVMVKSDLCWMKG 182
                   ++  +TG          E+    E  +D++    + +G++P+MVKS +C +  
Sbjct: 145  EMDEDQQAEYKRTGENPTKLVWELEESGDDEGKADDSWKDMVFVGKLPIMVKSKICHLSS 204

Query: 183  VEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSE 231
                      +C +D GGYF+I G+EKV +AQE+     + V      +   +T   +S 
Sbjct: 205  EHDDNLFLVNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSPYTYTAEIRSA 264

Query: 232  -NKRNRLI--VRLVDMSKFEDIKGG---EKVLSVYFLSTEIPIWILFFALGVSSDKEIVN 285
              K +RLI  + L    K +  +GG       ++ F+  ++P+ I+F ALGV SD++I+N
Sbjct: 265  LEKGSRLISSMMLKLYGKGDSARGGFGQTIHTTLPFVKADLPVAIVFRALGVVSDEDILN 324

Query: 286  LIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTE----- 340
             I +   D  +L +L   I +A   C + R+   AL ++ K  +G     G   E     
Sbjct: 325  HICYDRTDSQMLEMLRPCIEEA--FCVQDRE--VALDFIGK--RGNRDQAGLGREKRVRV 378

Query: 341  --ECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGE 394
              + +     P +  ++    +KA FLGYMV  LLQ   GRR+ D+RD F  KRL+LAG 
Sbjct: 379  AKDILQKETLPHISQSEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLDLAGP 438

Query: 395  LLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPF 454
            LL +  +  +      ++  L+R + G+R    +   +    L+NGL  + +TG W    
Sbjct: 439  LLAKLFRGIVRRMNTELSNYLKRCVEGNRHFN-LAVGIKPGTLSNGLKYSLATGNWGDQK 497

Query: 455  KRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDG 514
            K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G
Sbjct: 498  KAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEG 557

Query: 515  ENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVC 573
            + CGLVKNL +   VS  S  EP+ E + N GME + +          K+FV+G W GV 
Sbjct: 558  QACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVEEYEPLRYPHATKIFVNGVWCGVH 617

Query: 574  KDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN-------- 625
             D    VS++   RR+  L  +V + RD    E ++F DAGR++RP+  V+         
Sbjct: 618  SDPKHLVSQVLDTRRKSYLQYEVSLVRDIRDREFKVFSDAGRVMRPVFTVQQEDDHESGI 677

Query: 626  ----MGKIKSLEGKNYTFQA--------------LLDHGIIELVGTEEEED---CCTAWG 664
                +   K L  K    QA              L+  G IE +  EEEE    C T   
Sbjct: 678  AKGALVLTKDLVNKLAKEQAEPPEDPSMKIGWEGLIRAGTIEYLDAEEEETAMICMTPED 737

Query: 665  IK--------YLLKDIEDKKPIK------------FTHCELDMSFLLGLSCGIIPFANHD 704
            +         Y++ D     P +            +THCE+  S +LG+   IIPF +H+
Sbjct: 738  LDLYRMQKAGYVVDDDNTDDPNRRLKTKTNPTTHMYTHCEIHPSMILGICASIIPFPDHN 797

Query: 705  HARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNH 764
             + R  YQS     QA+GF  TN S R+DT+++ L+YPQ+PL  T   +           
Sbjct: 798  QSPRNTYQS-AMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSME----------- 845

Query: 765  ILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQV 824
             L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   RSY     ++E +V
Sbjct: 846  FLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYS----DQEKKV 901

Query: 825  KRRSSD---DMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA-------DSG 874
                ++          ++ K G  D LD+DG    G  +   DI+IGK A       D G
Sbjct: 902  GLNYTEVFEKPFQQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDQENQDLG 961

Query: 875  A--------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQ 926
                     D S  L+ TE G+V  V+++ N D   +  V +R  + P +GDKF+S HGQ
Sbjct: 962  TRTTVHQRRDISTPLRSTENGIVDSVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHGQ 1021

Query: 927  KGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGL 986
            KG +G    QE+ PF+ +G+ PDI+INPHA PSR T   L+E  L K ++ L      G+
Sbjct: 1022 KGTIGVTYRQEDMPFSREGVTPDIIINPHAIPSRMTIAHLIECLLSK-VSTL-----EGM 1075

Query: 987  KRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSE 1046
            +  ATPF   +VD+++E L + G+   G E +Y+G TG  +R+ +F GPT+YQRL HM +
Sbjct: 1076 EGDATPFTDVTVDSVSELLRKHGYQSRGFEIMYNGHTGRKLRAQVFFGPTYYQRLRHMVD 1135

Query: 1047 DKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQM 1106
            DK+  R  GPV  +TRQPV  R R GG++FGEMERDC+IAHGAAA L ERLF +SD++++
Sbjct: 1136 DKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAFRV 1195

Query: 1107 HICRKC---KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMG 1163
            H+C  C     +AN+ ++            CR C +   I + ++PY AKLL QEL SM 
Sbjct: 1196 HVCEVCGLMTPIANLSKQSFE---------CRPCKNKTKIAQIHIPYAAKLLFQELQSMN 1246

Query: 1164 ITLKFDT 1170
            I  +  T
Sbjct: 1247 IAARMFT 1253


>gi|198418494|ref|XP_002128916.1| PREDICTED: similar to POLR2B protein [Ciona intestinalis]
          Length = 1173

 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 414/1236 (33%), Positives = 623/1236 (50%), Gaps = 140/1236 (11%)

Query: 1    MDSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFD 60
            M  DD+         ++  E  +  C     S+F+E GLV  Q++S++EFI+  +Q+   
Sbjct: 1    MYDDDDLDLQAEEEEEISPEMWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQR--- 57

Query: 61   SFGETIVEPGYDPSKKGEGEWRYAS----------MRFGQVTLDKPSFFAGNGGDEHDMF 110
                 IVE    P  + + E ++ S          ++F Q+ L KP+ +  +G     M 
Sbjct: 58   -----IVEDA--PIIELQAESQHTSTEVSVPTKYLLKFEQIYLSKPTHWEKDGAPS-PMM 109

Query: 111  PRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIP 170
            P  ARL+N+TYS+ + V +   V                   + + +  +     IG+IP
Sbjct: 110  PNEARLRNLTYSAPLYVDITKTVVKH----------------EAQPVETQHQKTFIGKIP 153

Query: 171  VMVKSDLCWMKGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGW 224
            +M++S  C + G+      E  +C  D GGYFII G+EKV +AQE++    ++V      
Sbjct: 154  IMLRSTYCLLSGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFKKKDS 213

Query: 225  TVAYKSE------NKRNRLIVRLVDM-----SKFEDIKGGEKVLSVY-FLSTEIPIWILF 272
              A+ SE      N         V+M        +    G+++ ++  ++  EIPI I+F
Sbjct: 214  KYAFTSEIRSSLENSSRPTSSMWVNMLARGGQGVKKSAIGQRITAIIPYIRQEIPIIIVF 273

Query: 273  FALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA------- 320
             ALG  SD++I+  I +  +D  ++ ++  S+ +A      N    F   R A       
Sbjct: 274  RALGFVSDRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKE 333

Query: 321  --LKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKC 378
              +KY  ++++    P    ++ C             +KA FLGYMV  LL A  GRR+ 
Sbjct: 334  KRIKYAREILQKEMLPHVGISDFC-----------ETKKAYFLGYMVHRLLSAALGRREL 382

Query: 379  DNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILT 438
            D+RD + NKRL+LAG LL    +    +  K +    Q+ +   +    +E  +   I+T
Sbjct: 383  DDRDHYGNKRLDLAGPLLAFLFRGLFRNLMKEVRLYAQKFIDRGKDFN-LELAIKTRIIT 441

Query: 439  NGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYP 498
            +GL  + +TG W    K  +  +G+   L R     TL  LRR    +   GK+   R  
Sbjct: 442  DGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTYASTLSHLRRLNSPIGRDGKLAKPRQL 501

Query: 499  HPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSL 557
            H S WG IC   TP+G   GLVKNL +   +S  S   PI E L    ME L + +  ++
Sbjct: 502  HNSLWGMICPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPSAI 561

Query: 558  GGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRI 616
                K+FV+G W+G+ +D    ++ LR+ RR+ ++  ++V + RD  + E+RI+ DAGRI
Sbjct: 562  ANATKIFVNGCWVGIHRDPEQLMNTLRKLRRQMDIIVSEVSMVRDIREREIRIYTDAGRI 621

Query: 617  LRPLLVVEN---MGKIKSLEG-----KNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYL 668
             RPLL+VEN   + K + ++       +Y++Q L+  G++E +   EEE    A      
Sbjct: 622  CRPLLIVENQKLLLKTRHIDQLKEDYNSYSWQDLVASGVVEYIDPLEEETIMLAM----F 677

Query: 669  LKDIEDKKP---IKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPT 725
             +D++DK       +THCE+  + +LG+   IIPF +H+ + R  YQS     QA+G   
Sbjct: 678  PEDLQDKGEQYCSTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYI 736

Query: 726  TNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHL 785
            TN  +R+DTL+H L+YPQ+PL  T   + L              EL  G NAIVA++ + 
Sbjct: 737  TNFHVRMDTLAHVLYYPQKPLVTTRSMEYLR-----------FRELPAGINAIVAISTYT 785

Query: 786  GYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRV 845
            GYNQEDS+++N++S++RG FRS   RSYK + +NK    +  + +          +    
Sbjct: 786  GYNQEDSIIVNKSSVDRGFFRSVFYRSYK-DAENKSAYDQEETFERPERSFCTGMRHAIY 844

Query: 846  DSLDDDGFPFIGANLQSGDIVIGKYAD---------------SGADHSIKLKHTERGMVQ 890
            D LDDDG    G  +   D+VIGK                     D S  L+ +E G+V 
Sbjct: 845  DKLDDDGLVSPGIRVSGDDVVIGKTVMLPENEDELEGTTQRFKKRDVSTFLRTSETGIVD 904

Query: 891  KVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDI 950
            +V++S N DG  F+ + +R VR P +GDKF+S HGQKG  G     E+ PFT +G+ PD+
Sbjct: 905  QVMISINQDGYKFTKIRVRSVRVPQIGDKFASRHGQKGTCGITYRAEDMPFTSEGVQPDL 964

Query: 951  VINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFA-TPSVDAITEQLHRAG 1009
            ++NPHA PSR T G L+E   GK   +  KG        ATPF  T +V  I+  LH  G
Sbjct: 965  IVNPHAIPSRMTIGHLIECIQGK--VSANKGEIGD----ATPFNDTVNVQKISNLLHEYG 1018

Query: 1010 FSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRK 1069
            + + G E LY+G TG  + + +F GPT+YQRL HM +DK+  R  GPV  L RQP+  R 
Sbjct: 1019 YQQRGNEVLYNGHTGRKLNTQVFFGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRS 1078

Query: 1070 RFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKV 1129
            R GG++FGEMERDC IAHGAA  L ERLF  SD Y++H+C  C  +A           + 
Sbjct: 1079 RDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYRVHVCNLCGLIAI-------ANLRS 1131

Query: 1130 RGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
                CR C +   I +  +PY  KLL QEL SM I 
Sbjct: 1132 HTFECRGCKNKTHISQVRMPYACKLLFQELMSMSIA 1167


>gi|346320677|gb|EGX90277.1| DNA-directed RNA polymerase II polypeptide [Cordyceps militaris CM01]
          Length = 1261

 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 427/1270 (33%), Positives = 646/1270 (50%), Gaps = 163/1270 (12%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGE-TIVEPGYDPSKKGEGEWRYA 84
            C     SFF   GLVS Q  S++EF +  +Q     + + ++ +P    + + +   R  
Sbjct: 24   CWTVISSFFESKGLVSQQTASFDEFTQTTIQDLVSEYSKISLDQPNPPSTDERKISVRRY 83

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSS----RMKVKVQFQVYTQKRVT 140
             + FG + + +PS  +   G    + P   R +N+TY++    ++  KVQ  V T+  + 
Sbjct: 84   EIEFGSIMVSRPSI-SETDGTVTSLLPYECRDRNLTYAAPVYIKITKKVQAAVETEIPLH 142

Query: 141  -------SDKFKTG----REQYIQKEVLSDETTN--------IIIGRIPVMVKSDLCWMK 181
                   ++  K+G    R  +  ++V   E  N        + +G++PVMVKS +C + 
Sbjct: 143  ELDDAQHTEYAKSGELPTRLAWESEDVSEPENANKPDAWKDMVFVGKMPVMVKSKVCHLS 202

Query: 182  GVEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKS 230
                       +C +D GGYF+I G+EKV +AQE+     + V      +   +T   +S
Sbjct: 203  REHDENLFLVNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSPYTYTAEIRS 262

Query: 231  E-NKRNRLI--VRLVDMSKFEDIKGG---EKVLSVYFLSTEIPIWILFFALGVSSDKEIV 284
               K +RLI  + L    K E  +GG       ++ F+ +++P+ I+F ALGV SD++I+
Sbjct: 263  ALEKGSRLISSMMLKLYGKGESARGGFGQTIHTTLPFVKSDLPVAIVFRALGVVSDEDIL 322

Query: 285  NLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPG-------E 337
            N I +  +D  +L +L   I +A   C + R+   AL ++ K  +G     G        
Sbjct: 323  NHICYDRKDSQMLEMLRPCIEEA--FCVQDRE--VALDFIGK--RGNRDQAGLGRDKRIR 376

Query: 338  STEECMNTYLFPSLH----GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAG 393
               + +     P +        +KA F+GYMV  LLQ   GRR+ D+RD F  KRL+LAG
Sbjct: 377  VARDILQKETLPHISQEAGSETRKAFFIGYMVHKLLQCALGRREPDDRDHFGKKRLDLAG 436

Query: 394  ELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHP 453
             LL +  +  +      +A  L+R + G+R    +   +    L+NGL  + +TG W   
Sbjct: 437  PLLAKLFRGIMRRMHSELANYLRRCVEGNRHFN-LAVGIKPGTLSNGLKYSLATGNWGDQ 495

Query: 454  FKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPD 513
             K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+
Sbjct: 496  KKAANSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPE 555

Query: 514  GENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGV 572
            G+ CGLVKNL +   VS  S  EP+ + + N GME + +          K+FV+G W+GV
Sbjct: 556  GQACGLVKNLSLMCYVSVGSPAEPLIDFMINRGMEVIEEYEPLRYPHATKIFVNGTWVGV 615

Query: 573  CKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------- 625
             +D    V ++   RR+  L  +V + RD    E +IF DAGR++RP+  V+        
Sbjct: 616  HQDPKHLVDQVFDTRRKSYLQYEVSLIRDIRDQEFKIFSDAGRVMRPVFTVQQKNDPETG 675

Query: 626  -----MGKIKSLEGKNYTFQA--------------LLDHGIIELVGTEEEED---CCTAW 663
                 +G  K L  K    QA              L+  G IE +  EEEE    C T  
Sbjct: 676  LEKGQLGLTKDLVNKLAQEQADPPDDSELKMGWEGLIKAGAIEYLDAEEEETSMICMTPE 735

Query: 664  GIK-YLLK-------------DIEDKKPIK-------FTHCELDMSFLLGLSCGIIPFAN 702
             ++ Y L+             D+  +   K       +THCE+  S +LG+   IIPF +
Sbjct: 736  DLELYRLQKAGLSVDDDHEGGDLNKRLKTKTNPTTHMYTHCEIHPSMILGICASIIPFPD 795

Query: 703  HDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGH 762
            H+ + R  YQS     QA+GF  TN S R+DT+++ L+YPQ+PL  T   +         
Sbjct: 796  HNQSPRNTYQS-AMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSME--------- 845

Query: 763  NHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEM 822
               L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   RSY     ++E 
Sbjct: 846  --FLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYS----DQEK 899

Query: 823  QVKRRSSD---DMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA-------D 872
            +V    ++      +   ++ K G  D LD+DG    G  +   DI+IGK A       D
Sbjct: 900  KVGLNYTEIFEKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDPETQD 959

Query: 873  SGA--------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMH 924
             G         D S  L+ TE G+V +V+++ N D   +  V +R  + P +GDKF+S H
Sbjct: 960  LGTRTTAHQRRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRH 1019

Query: 925  GQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICS 984
            GQKG +G    QE+ PFT +G+ PDI+INPHA PSR T   L+E  L K ++ L      
Sbjct: 1020 GQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSK-VSTL-----E 1073

Query: 985  GLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHM 1044
            G++  ATPF   +VD++++ L + G+   G E +Y+G TG+ +R+ +F GPT+YQRL HM
Sbjct: 1074 GMEGDATPFTDVTVDSVSDLLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLRHM 1133

Query: 1045 SEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSY 1104
             +DK+  R  GPV  +TRQPV  R R GG++FGEMERDC+IAHGAAA L ERLF +SD++
Sbjct: 1134 VDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAF 1193

Query: 1105 QMHICRKC---KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFS 1161
            ++HIC  C     +AN+ ++            CR C +   I + ++PY AKLL QEL S
Sbjct: 1194 RVHICEICGLMTPIANLSKQSFE---------CRPCKNKTKIAQIHIPYAAKLLFQELQS 1244

Query: 1162 MGITLKFDTE 1171
            M I  +  T+
Sbjct: 1245 MNIAARMFTD 1254


>gi|326436004|gb|EGD81574.1| DNA-directed RNA polymerase II polypeptide [Salpingoeca sp. ATCC
            50818]
          Length = 1193

 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 410/1239 (33%), Positives = 630/1239 (50%), Gaps = 132/1239 (10%)

Query: 10   DPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP 69
            DP  + D+  +     C     ++FNE GLV  Q++S++ FI+ G+Q A +      +E 
Sbjct: 6    DPQYVGDISSQEWPQGCWDVINAYFNEKGLVRQQLDSFDHFIQYGIQDAVEKSPALEIEA 65

Query: 70   GYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKV 129
                +     E    S++F +V+L KP+ +  +G   H ++P  ARL+N+TY S M V+ 
Sbjct: 66   KPQYTTNEFEEPPSYSVKFCEVSLSKPTHYEEDGTS-HFLYPNDARLRNLTYWSEMFVEA 124

Query: 130  QFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD-- 187
            +              +T RE   Q       TT++ +G+IP+M++S  C + G    D  
Sbjct: 125  E--------------ETYRE--TQDSEPETTTTSVHLGKIPIMLRSKFCLLNGKLNDDLY 168

Query: 188  ----CDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR--------- 234
                C  D GGYFII G+EKV +AQE++    ++V         + +E K          
Sbjct: 169  NLNECPLDPGGYFIINGSEKVLLAQEKMAPNTVFVFEKKDPKYLFVTEIKSVLERSPRPP 228

Query: 235  NRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDC 294
            + L+V+L+  S+     G    +++ ++  ++P+ ++F ALG   D+ I+  I +   D 
Sbjct: 229  SSLLVKLLRGSQSAARSGPVLHVTLPYVRQDVPVVVVFRALGFEDDRSILEHIIYDFNDM 288

Query: 295  SILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYL 347
             ++ +L  S+       DE    +N    +D + K     P  S E       + +   L
Sbjct: 289  EMMEMLKPSL-------DEAFVIQNRDVALDWIGKRAVQSPAISKERRIHYAKDILQKEL 341

Query: 348  FPSL----HGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVH 403
             P +    H   +KA FLGYMV   LQA   RR+ D+RD + NKRL+++G L     +  
Sbjct: 342  LPHIGLGPHCETKKAFFLGYMVHRTLQAALRRRQLDDRDHYGNKRLDMSGPLTGFLFRTL 401

Query: 404  IAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGI 463
              +  K +   +Q+ L     ++ +   L++  + +GL  +F+TG W    K  E  +G+
Sbjct: 402  FRNVTKELRSYIQKKLNRSEEIK-LSAGLNSKQIESGLRYSFATGNWGTQAKAFEARAGV 460

Query: 464  VANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNL 523
               L R     TL  LRR    ++ TGK+   R  H +HWG IC   TP+G   GLVKNL
Sbjct: 461  SQVLNRLTFASTLSHLRRLNSPIERTGKIAKPRQLHNTHWGYICPAETPEGHAVGLVKNL 520

Query: 524  GVTGLVSTS-ILEPIFEQLFNSGMEKLADDASYS-LGGKFKVFVDGDWIGVCKDSLSFVS 581
             +   V+      P+ E L + GME L D AS S +    K+FV+G W+G+  +    V 
Sbjct: 521  ALMASVTVGGDATPVLELLNSIGMESLDDLASRSVIRDTTKIFVNGAWVGIHMEPEEVVR 580

Query: 582  ELRRKRRRKE--LPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE--------------- 624
             L   RR +   + ++V I RD  + E+ ++ D+GR+ RPLL+VE               
Sbjct: 581  NLHLCRRTQADMIQSEVSIFRDIREREIHVYSDSGRLTRPLLIVEKPELDDTFHDGTQQQ 640

Query: 625  --------NMGKIKSLEGKN-----YTFQALLDHGIIELVGTEEEEDCCTAWGIK-YLLK 670
                    ++ K++S   +N     Y++  L+  G++E +   EE+    A     + + 
Sbjct: 641  QTLALKKQHLEKLQSAAMQNAFEATYSWSDLVREGLVEYIDVNEEDTTMIAMTPDDFEMS 700

Query: 671  DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSI 730
            D +D     +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G  TTN  I
Sbjct: 701  DEQDLYCTTYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAM-GKQAMGIYTTNFHI 759

Query: 731  RVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQE 790
            R+DTL+H L+YPQ+PL +T   D      Y +   LP      G NAIVA+  + GYNQE
Sbjct: 760  RLDTLAHVLYYPQQPLVKTRSMD------YMYFKDLP-----AGINAIVAIMCYTGYNQE 808

Query: 791  DSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQV-KRRSSDDMVNFGKIQSKIGRVDSLD 849
            DS++MN+ +++RG+FRS   RSY +  +N   +V K          G   S  G+   L+
Sbjct: 809  DSVIMNKCAVDRGLFRSVFYRSYASSEENTGREVIKFEKPSRETCAGMRNSNYGK---LE 865

Query: 850  DDGFPFIGANLQSGDIVIGKYAD---------------SGADHSIKLKHTERGMVQKVVL 894
            DDG    G ++   D +IG+  +                  D S+ L+ +E G++ +V++
Sbjct: 866  DDGLIAPGTSVTGDDAIIGRTMELPPNAEARDSRLARFEKLDKSVFLRASENGIIDQVMV 925

Query: 895  SSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINP 954
            +    G  F  + +R +R P +GDKF+S HGQKG  G   SQE+ PFT QGI PDI++NP
Sbjct: 926  AMGPKGTRFVKIRVRSIRVPQIGDKFASRHGQKGTCGMQYSQEDMPFTCQGITPDIIVNP 985

Query: 955  HAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWG 1014
            HA PSR T G L+E  LGK       G   G    ATPF   +V+ +   L    F K+G
Sbjct: 986  HAIPSRMTIGHLIECLLGK------VGCLEGAFGDATPFIEVTVNEVASALEAHNFHKYG 1039

Query: 1015 TERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGI 1074
             E LY+G TG  +++ +F GPT+YQRL HM +DK+  R  GP+  LT+QPV  R R GG+
Sbjct: 1040 NEVLYNGFTGRKMQAQVFFGPTYYQRLKHMVDDKIHARARGPLQILTKQPVEGRSRDGGL 1099

Query: 1075 KFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGP 1132
            +FGEMERDC+IAHG+A  L ERLF +SD Y++H+C  C    +AN+ +  +         
Sbjct: 1100 RFGEMERDCMIAHGSAQFLRERLFEVSDPYRIHVCDICGLICIANLNKNELE-------- 1151

Query: 1133 YCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
             C+ C +   + +  +PY  KLL QEL SM I  +  T+
Sbjct: 1152 -CKACSNTTRVSQVRIPYACKLLFQELMSMCIAPRIMTD 1189


>gi|324120666|dbj|BAJ78724.1| RNA polymerase II second largest subunit [Chrysoperla nipponensis]
          Length = 1175

 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 412/1226 (33%), Positives = 621/1226 (50%), Gaps = 142/1226 (11%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPS 74
            ++  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S
Sbjct: 16   EISSELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIELQAEAQHTS 75

Query: 75   KKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVY 134
             + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +     
Sbjct: 76   GEMENPPRYL-LKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLTYSAPLYVDI----- 128

Query: 135  TQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDC 188
                 T    K G E  + +           IG+IP+M++S  C +  +      E  +C
Sbjct: 129  -----TKTIVKEGEEPIVTQH------QKTFIGKIPIMLRSSFCLLSKLTDRDLTELNEC 177

Query: 189  DFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR---------NRLIV 239
              D GGYFII G+EKV +AQE++    ++V +      A+KSE +          + L V
Sbjct: 178  PLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAFKSEIRSCLEHSSRPTSTLWV 237

Query: 240  RLVDM--SKFEDIKGGEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
             ++       +    G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  +
Sbjct: 238  NMMARGGQSIKKAAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 297

Query: 297  LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
            + ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C
Sbjct: 298  MEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKEKRIKYAREILQKEMLPHVGVSDFC 357

Query: 343  MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                         +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL      
Sbjct: 358  -----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLL------ 400

Query: 403  HIAHARKRMAKALQRD--LYGDRTV-RPIEYYLDASI----LTNGLSRAFSTGAWSHPFK 455
              A   + + K L ++  +Y  + + R  ++ LD +I    +T+GL  + +TG W    K
Sbjct: 401  --AFLFRGLFKNLMKEVRMYAQKFIDRGKDFNLDLAIKTKMITDGLRYSLATGNWGDQKK 458

Query: 456  RTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGE 515
              +  +G+   L R     TL  LRR    +   GK+   R  H + WG IC   TP+G 
Sbjct: 459  AHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 518

Query: 516  NCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCK 574
              GLVKNL +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +
Sbjct: 519  AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 578

Query: 575  DSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN-------- 625
            D    ++ LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPL++VEN        
Sbjct: 579  DPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRISRPLIIVENGSLLLKKS 638

Query: 626  -MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCE 684
             +  +K  E  NY +Q L+  G++E + T EEE    A     L    E      +THCE
Sbjct: 639  HIDMLKDREYNNYGWQGLVGSGVVEYIDTLEEETTMIAISPDDLRNSKEYAYCSTYTHCE 698

Query: 685  LDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQR 744
            +  + +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +
Sbjct: 699  IHPAMILGICASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHK 757

Query: 745  PLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGM 804
            PL  T   +            L   EL  G N+IVA+  + GYNQEDS+++N +++ERG 
Sbjct: 758  PLVTTRSME-----------YLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGF 806

Query: 805  FRSEHIRSYK----AEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANL 860
            FRS   RSYK      +  +E Q ++ +            +    D LDDDG    G  +
Sbjct: 807  FRSVFYRSYKDSESKRIGEQEEQFEKPTRQTCSGM-----RHALYDKLDDDGIISPGVRV 861

Query: 861  QSGDIVIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSV 905
               D+VIGK                  +  D S  L+++E G+V +V+L+ N +G  F  
Sbjct: 862  SGDDVVIGKTMTLPENEDELEGTTKRYTKRDASTFLRNSETGVVDQVMLTLNSEGYKFCK 921

Query: 906  VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 965
            + +R VR P +GDKF+S HGQKG  G    QE+ PFT +G+ PDI+INPHA PSR T G 
Sbjct: 922  IRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGH 981

Query: 966  LLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTG 1024
            L+E   GK   +  KG        ATPF    +V  I+  L   G+   G E +Y+G TG
Sbjct: 982  LIECIQGK--VSSNKGEIGD----ATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTG 1035

Query: 1025 EMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL 1084
              + + +F GPT+YQRL HM +DK+  R  GP+  L RQP   R R GG++FGEMERDC 
Sbjct: 1036 RKINAQVFFGPTYYQRLKHMVDDKIHSRARGPLQILVRQPSEGRARDGGLRFGEMERDCQ 1095

Query: 1085 IAHGAAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDD 1142
            I+HGAA  L ERLF +SD Y++H+C  C    +AN+               C+ C +   
Sbjct: 1096 ISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANLRNNTFE---------CKGCKNKTQ 1146

Query: 1143 IVKANVPYGAKLLCQELFSMGITLKF 1168
            I +  +PY AKLL QEL SM I  + 
Sbjct: 1147 ISQVRLPYAAKLLFQELMSMNIAPRL 1172


>gi|358386392|gb|EHK23988.1| hypothetical protein TRIVIDRAFT_76818 [Trichoderma virens Gv29-8]
          Length = 1261

 Score =  613 bits (1581), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 421/1268 (33%), Positives = 642/1268 (50%), Gaps = 162/1268 (12%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEG-EWRYA 84
            C     SFF   GLVS Q +S++EF +  +Q   + +    ++    PS  G     R  
Sbjct: 25   CWTVISSFFETKGLVSQQTDSFDEFTQTTIQDLVNEYSTITLDQPNPPSPPGRTIALRRY 84

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQV--YTQKRVTSD 142
             ++FG V + +P+  +   G    + P   R +N+TY+S + +K+  +V    ++ V   
Sbjct: 85   EIKFGSVMVSRPTI-SETDGTVTSLLPYECRDRNLTYASPLYIKITKKVSAAVEREVPLH 143

Query: 143  KFKTGREQYIQKEV--------------------LSDETTNII-IGRIPVMVKSDLCWMK 181
            +    +++   +                       SD+  +++ +G++P+MVKS +C + 
Sbjct: 144  EMDDAQQEEYARTGEHPTKLEWEEEENGEDDNVGKSDDWKDMVFVGKLPIMVKSKICHLS 203

Query: 182  GVEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKS 230
              +        +C +D GGYF+I G+EKV +AQE+     + V      ++  +T   +S
Sbjct: 204  REQDDSLFLVNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSAYTYTAEIRS 263

Query: 231  E-NKRNRLI--VRLVDMSKFEDIKGG---EKVLSVYFLSTEIPIWILFFALGVSSDKEIV 284
               K +RLI  + L    K +  +GG       ++ F+ +++P+ I+F ALGV SD++I+
Sbjct: 264  ALEKGSRLISSMMLKLYGKGDSARGGFGQTIHTTLPFVKSDLPVAIVFRALGVVSDEDIL 323

Query: 285  NLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTE---- 340
            N I +   D  +L +L   I +A   C + R+   AL ++ K  +G     G   E    
Sbjct: 324  NHICYDRNDSQMLEMLRPCIEEA--FCVQDRE--VALDFIGK--RGNRDQAGLGREKRVR 377

Query: 341  ---ECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAG 393
               + +     P +  T+    +KA FLGYMV  LLQ   GRR+ D+RD F  KRL+LAG
Sbjct: 378  VAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLDLAG 437

Query: 394  ELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHP 453
             LL +  +  +      +A  L+R + G+R    +   +    L+NGL  + +TG W   
Sbjct: 438  PLLAKLFRGIMRRMNTELANYLRRCVEGNRHFN-LAVGIKPGTLSNGLKYSLATGNWGDQ 496

Query: 454  FKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPD 513
             K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+
Sbjct: 497  KKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPE 556

Query: 514  GENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGV 572
            G+ CGLVKNL +   VS  S  EP+ E + N GME + +          K+FV+G W+GV
Sbjct: 557  GQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVEEYEPLRYPHATKIFVNGVWVGV 616

Query: 573  CKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE-------- 624
             +D    V+++   RR+  L  +V + R+    E +IF DAGR++RP+  V+        
Sbjct: 617  HQDPKHLVNQVLDTRRKSYLQYEVSLVREIRDQEFKIFSDAGRVMRPVFTVQQEDDPETG 676

Query: 625  -NMGKI---KSLEGKNYTFQA--------------LLDHGIIELVGTEEEED---CCTAW 663
             N G +   K L  +    QA              L+  G +E +  EEEE    C T  
Sbjct: 677  INKGHLVLTKELVNRLAKEQAEPPEDPSMKIGWEGLIRAGAVEYLDAEEEETSMICMTPE 736

Query: 664  GIKYL--------------------LKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANH 703
             ++                      LK   +     +THCE+  S +LG+   IIPF +H
Sbjct: 737  DLELYRLQKAGISTDEDMGDDPNKRLKTKTNPTTHMYTHCEIHPSMILGICASIIPFPDH 796

Query: 704  DHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHN 763
            + + R  YQS     QA+GF  TN S R+DT+++ L+YPQ+PL  T   +          
Sbjct: 797  NQSPRNTYQS-AMGKQAMGFFLTNYSRRMDTMANILYYPQKPLGTTRSME---------- 845

Query: 764  HILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQ 823
              L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   RSY     ++E +
Sbjct: 846  -FLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYS----DQEKK 900

Query: 824  VKRRSSD---DMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA----- 875
            V    ++      +   ++ K G  D LD+DG    G  +   DI+IGK A   A     
Sbjct: 901  VGLNYTEVFEKPFHQNTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDAETQDL 960

Query: 876  ----------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHG 925
                      D S  L+ TE G+V  V+++ N D   +  V +R  + P +GDKF+S HG
Sbjct: 961  GTRTTMHQRRDISTPLRSTENGIVDSVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHG 1020

Query: 926  QKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSG 985
            QKG +G    QE+ PFT +G+ PDI+INPHA PSR T   L+E  L K ++ L      G
Sbjct: 1021 QKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSK-VSTL-----EG 1074

Query: 986  LKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMS 1045
            ++  ATPF   +VD+++E L + G+   G E +Y+G TG  +R+ +F GPT+YQRL HM 
Sbjct: 1075 MEGDATPFTDVTVDSVSELLRKHGYQSRGFEIMYNGHTGRKLRAQVFFGPTYYQRLRHMV 1134

Query: 1046 EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQ 1105
            +DK+  R  GPV  +TRQPV  R R GG++FGEMERDC+IAHGAA+ L ERLF +SD+++
Sbjct: 1135 DDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFR 1194

Query: 1106 MHICRKC---KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSM 1162
            +HIC  C     +AN+ ++            CR C +   I + ++PY AKLL QEL SM
Sbjct: 1195 VHICEICGLMTPIANLSKQSFE---------CRPCKNKTKIAQIHIPYAAKLLFQELQSM 1245

Query: 1163 GITLKFDT 1170
             I  +  T
Sbjct: 1246 NIAARMFT 1253


>gi|325092558|gb|EGC45868.1| DNA-dependent RNA polymerase II RPB140 [Ajellomyces capsulatus H88]
          Length = 1307

 Score =  613 bits (1581), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 411/1199 (34%), Positives = 613/1199 (51%), Gaps = 137/1199 (11%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGE--WRY 83
            C     SFF   GLVS Q++S++EFI   +Q+  +  G+  ++    P++        R 
Sbjct: 127  CWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPAEDEIDPVVLRR 186

Query: 84   ASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT-------- 135
              ++FG V L +PS   G+G     M P+ ARL+N+TY+S + + +  +V          
Sbjct: 187  YELKFGTVMLARPSMTEGDGATSI-MLPQEARLRNLTYASPLYLGITKRVTEGRERLIAE 245

Query: 136  -----QKRVTSDKFKTGREQYIQKE--VLSD---ETTNIIIGRIPVMVKSDLCWMKGVEK 185
                 Q    +D+ +  R  Y+  E   L++   E  N+ IGR+P+M+KS  C +K + +
Sbjct: 246  RDDAEQGEEDNDEERRSRGTYLHWEPKALNEDEPEEENVFIGRMPIMLKSKYCILKDLNE 305

Query: 186  ------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKR 234
                   +C +D GGYFII G+EKV +AQE+     + V      +   +    +S  ++
Sbjct: 306  QSLYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAVEK 365

Query: 235  NRLIVRLVDMSKF---EDIKGG--EKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLID 288
               I+  + +  F   +  KGG    + S   ++ T+IPI ++F ALGV SD++I+N I 
Sbjct: 366  GSRILSQLSIKLFGKGDTSKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDEDILNHIC 425

Query: 289  FTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES----TEECMN 344
            +   D  +L +L   I +     D       AL ++ K     T    E       + + 
Sbjct: 426  YDRNDTPMLEMLKPCIEEGFVIQDR----EVALDFISKRGSSPTSMNHEKRVRYARDIIQ 481

Query: 345  TYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLEREL 400
                P +  ++    +KA FLGYMV  LLQ   GRR  D+RD F  KRL+LAG LL    
Sbjct: 482  KEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLF 541

Query: 401  KVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERI 460
            ++      K + K +QR +  +R +  +   + AS L++GL  A +TG W    K     
Sbjct: 542  RILFMRVTKDLYKYVQRCVETNRQLY-LNIGVKASTLSSGLKYALATGNWGEQKKAASSK 600

Query: 461  SGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLV 520
            +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLV
Sbjct: 601  AGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLV 660

Query: 521  KNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSF 579
            KNL +   ++  +  EPI + +    ME L +          KVFV+G W+GV +D    
Sbjct: 661  KNLALMCCITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNATKVFVNGVWVGVHRDPSHL 720

Query: 580  VSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK----------- 628
            VS ++  RRR  +  +V + RD    E +IF DAGR+ RPL VVEN  K           
Sbjct: 721  VSTVQSLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVVENDPKSENCGSLVLSK 780

Query: 629  --IKSLEG---------------KNYTFQALLDHGIIELVGTEEEE---------DCCTA 662
              I  LE                + + +  L+  G++E V  EEEE         D  T+
Sbjct: 781  EHIHKLEADKELPPDLDPEERRERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPEDLETS 840

Query: 663  WGIK--YLLKDIEDKKPIK------------FTHCELDMSFLLGLSCGIIPFANHDHARR 708
              ++  + L + ++  P +            +THCE+  S +LG+   IIPF +H+ + R
Sbjct: 841  KQLQAGFSLPEEDNNDPNRRVRSTLSQKTHTWTHCEIHPSMILGICASIIPFPDHNQSPR 900

Query: 709  VLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPR 768
              YQS     QA+G   TN   R++T+++ L+YPQ+PL  T   +            L  
Sbjct: 901  NTYQS-AMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSME-----------FLKF 948

Query: 769  PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRS 828
             EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y        M V  R 
Sbjct: 949  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGMTVVERF 1008

Query: 829  SDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD---------------S 873
               M +   ++ K G  D +DDDG    G  +   DI+IGK A                +
Sbjct: 1009 EKPMRS-DTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKQHT 1067

Query: 874  GADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
              D S  L+ TE G+V +V++S+++D   F  V +R  + P +GDKF+S HGQKG +G  
Sbjct: 1068 KIDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 1127

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
              QE+ PFT +GIVPD++INPHA PSR T   L+E  L K +++L      G +  ATPF
Sbjct: 1128 YRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSK-VSSL-----RGFEGDATPF 1181

Query: 994  ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
               +VD+I+  L   G+   G E +Y+G TG  + + +F+GPT+YQRL HM +DK+  R 
Sbjct: 1182 TDVTVDSISSLLREHGYQSRGFEVMYNGYTGRKLVAQVFLGPTYYQRLRHMVDDKIHARA 1241

Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKC 1112
             GP   LTRQPV  R R GG++FGEMERDC+IAHGA+A L ERLF +SD +++HIC  C
Sbjct: 1242 RGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDIC 1300


>gi|383851705|ref|XP_003701372.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
            [Megachile rotundata]
          Length = 1175

 Score =  613 bits (1581), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 413/1229 (33%), Positives = 630/1229 (51%), Gaps = 148/1229 (12%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPS 74
            ++  +  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S
Sbjct: 16   EISSKLWQEACWIVINAYFDEKGLVRQQLDSFDEFIEMSVQRIVEDSPQIDLQAEAQHTS 75

Query: 75   KKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVY 134
             + E   R+  ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +     
Sbjct: 76   GEIENPVRHL-LKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLTYSAPLYVDI----- 128

Query: 135  TQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDC 188
                 T    K G      ++ +  +     IG+IP+M++S  C + G+      E  +C
Sbjct: 129  -----TKTIVKDG------EDPIETQHQKTFIGKIPIMLRSKYCLLAGLSDRDLTELNEC 177

Query: 189  DFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR---------NRLIV 239
              D GGYFII G+EKV +AQE++    ++V +      AYKSE +          + L +
Sbjct: 178  PLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKSEIRSCLEHSSRPTSTLWI 237

Query: 240  RLVDMSKFEDIKG--GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
             ++  S     K   G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  +
Sbjct: 238  NMMAKSGASIKKSAIGQRIIAIIPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 297

Query: 297  LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
            + ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C
Sbjct: 298  MEMVKPSLDEAFVIQEQNVALNFIGTRGARPGVTKEKRIKYAREILQKEMLPHVGISDFC 357

Query: 343  MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                         +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL      
Sbjct: 358  -----------ETKKAYFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLL------ 400

Query: 403  HIAHARKRMAKALQRD--LYGDRTVR-----PIEYYLDASILTNGLSRAFSTGAWSHPFK 455
              A   + + K L ++  LY  + +       +E  +   I+T+GL  + +TG W    K
Sbjct: 401  --AFLFRGLFKNLMKEVRLYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 458

Query: 456  RTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGE 515
              +  +G+   L R     TL  LRR    +   GK+   R  H + WG +C   TP+G 
Sbjct: 459  AHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGA 518

Query: 516  NCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCK 574
              GLVKNL +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +
Sbjct: 519  AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 578

Query: 575  DSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVE--------- 624
            D    ++ LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VE         
Sbjct: 579  DPDQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRISRPLLIVEGQNLLLKKR 638

Query: 625  NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCE 684
            ++  +K  +  N  +Q L+  G++E + T EEE    A   + L ++ E      +THCE
Sbjct: 639  HIDMLKERDYNNDGWQELVGSGVVEYIDTLEEETVMIAMSPEDLRQEKEYAYCTTYTHCE 698

Query: 685  LDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQR 744
            +  + +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +
Sbjct: 699  IHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHK 757

Query: 745  PLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGM 804
            PL  T   +            L   EL  G N+IVA+  + GYNQEDS+++N +++ERG 
Sbjct: 758  PLVTTRSME-----------YLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGF 806

Query: 805  FRSEHIRSYK----AEVDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIG 857
            FRS   RSYK      + ++E Q +   R++   M N           D LDDDG    G
Sbjct: 807  FRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMRN--------AIYDKLDDDGIIAPG 858

Query: 858  ANLQSGDIVIGKY-----ADSGADHSIK----------LKHTERGMVQKVVLSSNDDGKN 902
              +   D+VIGK      AD   D + K          L+++E G+V +V+L+ N +G  
Sbjct: 859  IRVSGDDVVIGKTITLPEADDELDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYK 918

Query: 903  FSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQT 962
            F  + +R VR P +GDKF+S HGQKG  G    QE+ PF+ +G+ PDI+INPHA PSR T
Sbjct: 919  FCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFSCEGLTPDIIINPHAIPSRMT 978

Query: 963  PGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDG 1021
             G L+E   GK   +  KG        ATPF    +V  I+  L   G+   G E +Y+G
Sbjct: 979  IGHLIECIQGK--VSANKGEIGD----ATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNG 1032

Query: 1022 RTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMER 1081
             TG  + + +F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMER
Sbjct: 1033 HTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMER 1092

Query: 1082 DCLIAHGAAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDS 1139
            DC I+HGAA  L ERLF +SD Y++HIC  C    +AN+               C+ C +
Sbjct: 1093 DCQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRNNTFE---------CKGCKN 1143

Query: 1140 GDDIVKANVPYGAKLLCQELFSMGITLKF 1168
               I +  +PY AKLL QEL +M I  + 
Sbjct: 1144 KTQISQVRLPYAAKLLFQELMAMNIAPRL 1172


>gi|398404063|ref|XP_003853498.1| DNA-directed RNA polymerase II subunit RPB2 [Zymoseptoria tritici
            IPO323]
 gi|339473380|gb|EGP88474.1| hypothetical protein MYCGRDRAFT_99853 [Zymoseptoria tritici IPO323]
          Length = 1231

 Score =  613 bits (1580), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 414/1267 (32%), Positives = 631/1267 (49%), Gaps = 172/1267 (13%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVE---PGYDPSKKGEGEWR 82
            C     SFF+E GLVS Q++S++EF    +Q+  D     +++    G D         +
Sbjct: 7    CWTVIHSFFDEKGLVSQQLDSFDEFASTTMQQIVDDQPAIVIDQNLAGLDEESGMPIVKK 66

Query: 83   YASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQV-YTQKRVTS 141
             +S++ G +T+ + +   G+G     M P  ARL+N+TYSS M +K++      ++R   
Sbjct: 67   RSSIKLGTLTVSQAAMTEGDGSTRA-MHPHEARLRNLTYSSPMFIKLEKTTQLARERALG 125

Query: 142  DKFKTGREQYIQ--------KEVLSDETTN-------IIIGRIPVMVKSDLCWMKGVEKG 186
              +   +  ++         + V  ++  N       + IG++PVM+KS +C ++   + 
Sbjct: 126  GHYDEDQGMWVAPPNWDGTVETVWEEDPDNPKQAIDQVFIGKLPVMLKSKICALRNRSEA 185

Query: 187  D------CDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-----NKRN 235
            +      C FD GGYFII G+EKV +AQE+     + V    G      +E      +  
Sbjct: 186  ELYAFQECPFDQGGYFIINGSEKVLIAQERSAANIVQVFRKKGTNTPVVAELRSAVERGT 245

Query: 236  RLI----VRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTC 291
            RLI    V+L + +      G    +S+ ++  ++PI I+F A+GV SD++I+  I   C
Sbjct: 246  RLISSMQVKLCNQAVAAQHSGQTIKVSLPYIRADVPIAIVFRAMGVVSDEDILAHI---C 302

Query: 292  --EDCSILNILFAS------IHDADNKCDEF-RKGRNA------LKYVDKLIKGTTFPPG 336
              ED  +   L         I D D   D   R+G+        ++Y   +++   F P 
Sbjct: 303  PEEDTQMREKLKPCLEEAFVIQDHDVALDHIGRRGQQQGTKDRRIRYARDIMQ-KEFLPH 361

Query: 337  ESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL 396
             S EE   T          +KA FLGYMV  +LQ   GR + D+RD F  KRL+LAG L+
Sbjct: 362  ISQEEGSET----------KKAFFLGYMVNRMLQCALGRTEEDDRDHFGKKRLDLAGPLM 411

Query: 397  ERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKR 456
             +  ++      K M + L R +   +    I   +  +I+T+GL    +TG W    K 
Sbjct: 412  AQVFRLKFQQLVKDMRQYLHRCVETGKDFN-IALAVKTNIITSGLRYCLATGNWGDQKKA 470

Query: 457  TERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGEN 516
                +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ 
Sbjct: 471  ASAKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQA 530

Query: 517  CGLVKNLGVTGLVSTSIL-EPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKD 575
            CGLVKNL +   V+     EPI + +   GM+ L +     +    KVF++G W+GV K 
Sbjct: 531  CGLVKNLSLMCYVTVGTPGEPIVDFMRQRGMDLLEEHDPNQVKDATKVFLNGTWVGVHKS 590

Query: 576  SLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK------- 628
            +      LR+ RR+  L  +V I RD  + E+R+F DAGR+ RPL VV+N  K       
Sbjct: 591  AGQLTETLRQLRRKGLLSFEVTIIRDVREREIRVFTDAGRVCRPLFVVDNNPKSLEPGTL 650

Query: 629  ----------------IKSLEGKN--------YTFQALLDHGIIELVGTEEEEDCCTAWG 664
                            + SLEG +        + ++ L+  G++E +  EEEE       
Sbjct: 651  MLKQDHVERLHQDQELLASLEGVSEEDREQQLFGWKGLVTSGVVEYLDAEEEEVAM---- 706

Query: 665  IKYLLKDIEDKKPIK--------------------------FTHCELDMSFLLGLSCGII 698
            I    +D+E+ + ++                          +THCE+  + +LG+   II
Sbjct: 707  IIMTPEDLEEHRVMRNGMAVEELKVDPHRRIKPKPNPQVRTYTHCEIHPAMILGICASII 766

Query: 699  PFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKP 758
            PF +H+ + R  YQ+       +G   TN ++R+DT+++ L+YPQ+PL  T   +     
Sbjct: 767  PFPDHNQSPRNTYQA------TMGVTLTNYNVRMDTMANVLYYPQKPLATTRSME----- 815

Query: 759  GYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVD 818
                   L   +L  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y  +  
Sbjct: 816  ------FLKFRDLPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYMDQEK 869

Query: 819  NKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH- 877
               M V   S +       ++ + G  D LD+DG    GA +   DI+IGK A    D  
Sbjct: 870  RVGMSVVE-SFEKPTRSDTMRMQHGTYDKLDEDGIISPGARVSGTDILIGKTAPMPPDAE 928

Query: 878  --------------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSM 923
                          S  L+ TE G+V +V+L++N +G  F  V  R  + P +GDKF+S 
Sbjct: 929  ELGQRTKLHVKRDVSTPLRSTENGVVDQVLLTTNTEGLRFVKVRTRVTKVPQIGDKFASR 988

Query: 924  HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGIC 983
            HGQKG +G    QE+ PF+  G+ PDI+INPHA PSR T   L+E  L K       G  
Sbjct: 989  HGQKGTIGITYRQEDMPFSADGLTPDIIINPHAIPSRMTIAHLIECLLSK------VGAL 1042

Query: 984  SGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIH 1043
             G +  ATPF   +V +I+E L   GF + G E +Y+G TG+ + + +F+GPT+YQRL H
Sbjct: 1043 QGQEGDATPFTEVTVTSISEILKSNGFQQRGFEVMYNGHTGKKLNAQVFLGPTYYQRLRH 1102

Query: 1044 MSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDS 1103
            M +DK+  R  GP+  LTRQPV  R R GG++FGEMERDC+IAHGA+A L ERL  +SD+
Sbjct: 1103 MVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLLDVSDA 1162

Query: 1104 YQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMG 1163
            +++HIC  C  +  +         K +   CR C +   I +  +PY AKLL QEL +M 
Sbjct: 1163 FRVHICELCGLMTPI------ASIKKQQFECRPCKNKTKIAQIIIPYAAKLLFQELAAMN 1216

Query: 1164 ITLKFDT 1170
            +  +  T
Sbjct: 1217 VATRMFT 1223


>gi|340517145|gb|EGR47390.1| beta subunit of DNA-directed RNA polymerase [Trichoderma reesei QM6a]
          Length = 1262

 Score =  613 bits (1580), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 418/1270 (32%), Positives = 636/1270 (50%), Gaps = 163/1270 (12%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEG-EWRYA 84
            C     SFF   GLVS Q +S++EF +  +Q   + +    ++    PS  G     R  
Sbjct: 25   CWTVISSFFETKGLVSQQTDSFDEFTQTTIQDLVNEYSTITLDQPNPPSPPGRTIALRRY 84

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKV--QFQVYTQKRVTSD 142
             ++FG V + +P+  +   G    + P   R +N+TY+S + +K+  +     +K +   
Sbjct: 85   EIKFGSVMVSRPTI-SETDGTVTSLLPYECRDRNLTYASPLYIKITKKLSAAVEKEIPLH 143

Query: 143  KFKTGREQYIQKEVLS----------------------DETTNIIIGRIPVMVKSDLCWM 180
            +    +++   +   +                      D    + +G++P+MVKS +C +
Sbjct: 144  EMDDAQQEEYARTGEAPTKLEWEEEEAGEDDHNIGKSEDWKDMVFVGKLPIMVKSKICHL 203

Query: 181  KGVEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYK 229
                        +C +D GGYF+I G+EKV +AQE+     + V      ++  +T   +
Sbjct: 204  SRETDDSLFLVNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSAYTYTAEIR 263

Query: 230  SE-NKRNRLI--VRLVDMSKFEDIKGG---EKVLSVYFLSTEIPIWILFFALGVSSDKEI 283
            S   K +RLI  + L    K +  +GG       ++ F+ +++P+ I+F ALGV SD++I
Sbjct: 264  SALEKGSRLISSMMLKLYGKGDSARGGFGQTIHTTLPFVKSDLPVAIVFRALGVVSDEDI 323

Query: 284  VNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTE--- 340
            +N I +   D  +L +L   I +A   C + R+   AL ++ K  +G     G   E   
Sbjct: 324  LNHICYDRNDSQMLEMLRPCIEEA--FCVQDRE--VALDFIGK--RGNRDQAGLGREKRV 377

Query: 341  ----ECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELA 392
                + +     P +  T+    +KA FLGYMV  LLQ   GRR+ D+RD F  KRL+LA
Sbjct: 378  RVAKDILQKETLPHISQTEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLDLA 437

Query: 393  GELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSH 452
            G LL +  +  +      +A  L+R + G+R    +   +    L+NGL  + +TG W  
Sbjct: 438  GPLLAKLFRGIMRRMNTELANYLRRCVEGNRHFN-LAVGIKPGTLSNGLKYSLATGNWGD 496

Query: 453  PFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTP 512
              K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP
Sbjct: 497  QKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETP 556

Query: 513  DGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIG 571
            +G+ CGLVKNL +   VS  S  EP+ E + N GME + +          K+FV+G W+G
Sbjct: 557  EGQACGLVKNLSLMCYVSVGSPSEPLIEFMINRGMEVVEEYEPLRYPHATKIFVNGVWVG 616

Query: 572  VCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE------- 624
            + +D    V ++   RR+  L  +V + R+    E +IF DAGR++RP+  V+       
Sbjct: 617  IHQDPKHLVQQVVDTRRKSYLQYEVSLVREIRDQEFKIFSDAGRVMRPVFTVQQDEESDT 676

Query: 625  -----NMGKIKSLEGKNYTFQA--------------LLDHGIIELVGTEEEED---CCTA 662
                 ++   K L  K    QA              L+  G +E +  EEEE    C T 
Sbjct: 677  GIPKGHLVLTKDLVNKLAQEQAEPPEDPSMKIGWEGLIRAGAVEYLDAEEEETAMICMTP 736

Query: 663  WGIKYL--------------------LKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFAN 702
              ++                      LK   +     +THCE+  S +LG+   IIPF +
Sbjct: 737  EDLELYRAQKAGIATEEDVGDDPNKRLKTRTNPTTHMYTHCEIHPSMILGICASIIPFPD 796

Query: 703  HDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGH 762
            H+ + R  YQS     QA+GF  TN S R+DT+++ L+YPQ+PL  T   +         
Sbjct: 797  HNQSPRNTYQS-AMGKQAMGFFLTNYSRRMDTMANILYYPQKPLGTTRSME--------- 846

Query: 763  NHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEM 822
               L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   RSY     ++E 
Sbjct: 847  --FLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYS----DQEK 900

Query: 823  QVKRRSSD---DMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH-- 877
            +V    ++      +   ++ K G  D LD+DG    G  +   DI+IGK A   AD   
Sbjct: 901  KVGLNYTEVFEKPFHQNTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDADTQD 960

Query: 878  -------------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMH 924
                         S  L+ TE G+V  V+++ N D   +  V +R  + P +GDKF+S H
Sbjct: 961  LGTRTTMHQRRDISTPLRSTENGIVDSVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRH 1020

Query: 925  GQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICS 984
            GQKG +G    QE+ PFT +GI PDI+INPHA PSR T   L+E  L K ++ L      
Sbjct: 1021 GQKGTIGVTYRQEDMPFTREGITPDIIINPHAIPSRMTIAHLIECLLSK-VSTL-----E 1074

Query: 985  GLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHM 1044
            G++  ATPF   +VD+++E L + G+   G E +Y+G TG  +R+ +F GPT+YQRL HM
Sbjct: 1075 GMEGDATPFTDVTVDSVSELLRKHGYQSRGFEIMYNGHTGRKLRAQVFFGPTYYQRLRHM 1134

Query: 1045 SEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSY 1104
             +DK+  R  GPV  +TRQPV  R R GG++FGEMERDC+IAHGAA+ L ERLF +SD++
Sbjct: 1135 VDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAF 1194

Query: 1105 QMHICRKC---KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFS 1161
            ++HIC  C     +AN+ ++            CR C +   I + ++PY AKLL QEL S
Sbjct: 1195 RVHICEICGLMTPIANLSKQSFE---------CRPCKNKTKIAQIHIPYAAKLLFQELQS 1245

Query: 1162 MGITLKFDTE 1171
            M I  +  T+
Sbjct: 1246 MNIAARMFTD 1255


>gi|400592641|gb|EJP60759.1| DNA-dependent RNA polymerase II beta subunit [Beauveria bassiana
            ARSEF 2860]
          Length = 1261

 Score =  612 bits (1579), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 425/1269 (33%), Positives = 644/1269 (50%), Gaps = 162/1269 (12%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEG-EWRYA 84
            C     SFF   GLVS Q  S++EF ++ +Q     + +  ++    PS        R  
Sbjct: 25   CWTVISSFFESKGLVSQQTASFDEFTQSTIQDLVSEYSKISLDQPNPPSNDDRKISVRRY 84

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSS----RMKVKVQFQVYTQKRV- 139
             + FG + + +PS  +   G    + P   R +N+TY++    ++  KVQ  V T+  + 
Sbjct: 85   EIEFGSIMVSRPSI-SETDGTVTSLLPYECRDRNLTYAAPVYIKITKKVQAAVETEIPLH 143

Query: 140  ------TSDKFKTG----REQYIQKEVLSDETTN--------IIIGRIPVMVKSDLCWMK 181
                   ++  KTG    R  +  ++    E +N        + +G++PVMVKS +C + 
Sbjct: 144  ELDDAQQTEYAKTGELPTRLAWRSEDAPEPENSNKPDAWKDMVFVGKMPVMVKSKVCHLS 203

Query: 182  GVEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKS 230
                       +C +D GGYF+I G+EKV +AQE+     + V      +   +T   +S
Sbjct: 204  REHDENLFLVNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSPYTYTAEIRS 263

Query: 231  E-NKRNRLI--VRLVDMSKFEDIKGG---EKVLSVYFLSTEIPIWILFFALGVSSDKEIV 284
               K +RLI  + L    K E  +GG       ++ F+  ++P+ I+F ALGV SD++I+
Sbjct: 264  ALEKGSRLISSMMLKLYGKGESARGGFGQTIHTTLPFVKADLPVAIVFRALGVVSDEDIL 323

Query: 285  NLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPG-------E 337
            N I +  +D  +L +L   I +A   C + R+   AL ++ K  +G     G        
Sbjct: 324  NHICYDRKDSQMLEMLRPCIEEA--FCVQDRE--VALDFIGK--RGNRDQAGLGRDKRIR 377

Query: 338  STEECMNTYLFPSLH----GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAG 393
               + +     P +        +KA F+GYMV  LLQ   GRR+ D+RD F  KRL+LAG
Sbjct: 378  VARDILQKETLPHISQEAGSETRKAFFIGYMVHKLLQCALGRREPDDRDHFGKKRLDLAG 437

Query: 394  ELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHP 453
             LL +  +  +      +A  L+R + G+R    +   +    L+NGL  + +TG W   
Sbjct: 438  PLLAKLFRGIMRRMHSELANYLRRCVEGNRHFN-LAVGVKPGTLSNGLKYSLATGNWGDQ 496

Query: 454  FKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPD 513
             K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+
Sbjct: 497  KKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPE 556

Query: 514  GENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGV 572
            G+ CGLVKNL +   VS  S  EP+ + + N GME + +          K+FV+G W+GV
Sbjct: 557  GQACGLVKNLSLMCYVSVGSPAEPLIDFMINRGMEVIEEYEPLRYPHATKIFVNGTWVGV 616

Query: 573  CKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------- 625
             +D      ++   RR+  L  +V + R+    E +IF DAGR++RP+  V++       
Sbjct: 617  HQDPKHLADQVFDTRRKSYLQYEVSLVREIRDQEFKIFSDAGRVMRPVFTVQSKNDPETG 676

Query: 626  -----MGKIKSLEGKNYTFQA--------------LLDHGIIELVGTEEEED---CCTAW 663
                 +G  K L  +    QA              L+  G +E +  EEEE    C T  
Sbjct: 677  LEKGQLGLTKDLVNRLAQEQADPPDDPEMKTGWEGLIKAGAVEYLDAEEEETSMICMTPE 736

Query: 664  GIK-YLLK------------DIEDKKPIK-------FTHCELDMSFLLGLSCGIIPFANH 703
             ++ Y L+            D+  +   K       +THCE+  S +LG+   IIPF +H
Sbjct: 737  DLELYRLQKAGVAVDDDHGDDLNKRLKTKTNPTTHMYTHCEIHPSMILGICASIIPFPDH 796

Query: 704  DHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHN 763
            + + R  YQS     QA+GF  TN S R+DT+++ L+YPQ+PL  T   +          
Sbjct: 797  NQSPRNTYQS-AMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSME---------- 845

Query: 764  HILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQ 823
              L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   RSY     ++E +
Sbjct: 846  -FLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYS----DQEKK 900

Query: 824  VKRRSSD---DMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA-------DS 873
            V    ++      +   ++ K G  D LD+DG    G  +   DI+IGK A       D 
Sbjct: 901  VGLNYTEIFEKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDPETQDL 960

Query: 874  GA--------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHG 925
            GA        D S  L+ TE G+V +V+++ N D   +  V +R  + P +GDKF+S HG
Sbjct: 961  GARTTAHQRRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTKIPQIGDKFASRHG 1020

Query: 926  QKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSG 985
            QKG +G    QE+ PFT +G+ PDI+INPHA PSR T   L+E  L K ++ L      G
Sbjct: 1021 QKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSK-VSTL-----EG 1074

Query: 986  LKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMS 1045
            ++  ATPF   +VD++++ L + G+   G E +Y+G TG+ +R+ +F GPT+YQRL HM 
Sbjct: 1075 MEGDATPFTDVTVDSVSDLLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLRHMV 1134

Query: 1046 EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQ 1105
            +DK+  R  GPV  +TRQPV  R R GG++FGEMERDC+IAHGAAA L ERLF +SD+++
Sbjct: 1135 DDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAFR 1194

Query: 1106 MHICRKC---KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSM 1162
            +HIC  C     +AN+ ++            CR C +   I + ++PY AKLL QEL SM
Sbjct: 1195 VHICEICGLMTPIANLSKQSF---------ECRPCKNKTKIAQIHIPYAAKLLFQELQSM 1245

Query: 1163 GITLKFDTE 1171
             I  +  T+
Sbjct: 1246 NIAARMFTD 1254


>gi|340726257|ref|XP_003401477.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Bombus
            terrestris]
 gi|350425904|ref|XP_003494269.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Bombus
            impatiens]
          Length = 1175

 Score =  612 bits (1579), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 413/1229 (33%), Positives = 630/1229 (51%), Gaps = 148/1229 (12%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPS 74
            ++  +  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S
Sbjct: 16   EISSKLWQEACWIVINAYFDEKGLVRQQLDSFDEFIEMSVQRIVEDSPQIDLQAEAQHTS 75

Query: 75   KKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVY 134
             + E   R+  ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +     
Sbjct: 76   GEIENPVRHL-LKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLTYSAPLYVDI----- 128

Query: 135  TQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDC 188
                 T    K G      ++ +  +     IG+IP+M++S  C + G+      E  +C
Sbjct: 129  -----TKTIVKDG------EDPIETQHQKTFIGKIPIMLRSKYCLLAGLSDRDLTELNEC 177

Query: 189  DFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR---------NRLIV 239
              D GGYFII G+EKV +AQE++    ++V +      AYKSE +          + L +
Sbjct: 178  PLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKSEIRSCLEHSSRPTSTLWI 237

Query: 240  RLVDMSKFEDIKG--GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
             ++  S     K   G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  +
Sbjct: 238  NMMAKSGASIKKSAIGQRIIAIIPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 297

Query: 297  LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
            + ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C
Sbjct: 298  MEMVKPSLDEAFVIQEQNVALNFIGTRGARPGVTKEKRIKYAREILQKEMLPHVGISDFC 357

Query: 343  MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                         +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL      
Sbjct: 358  -----------ETKKAYFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLL------ 400

Query: 403  HIAHARKRMAKALQRD--LYGDRTVR-----PIEYYLDASILTNGLSRAFSTGAWSHPFK 455
              A   + + K L ++  LY  + +       +E  +   I+T+GL  + +TG W    K
Sbjct: 401  --AFLFRGLFKNLMKEVRLYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 458

Query: 456  RTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGE 515
              +  +G+   L R     TL  LRR    +   GK+   R  H + WG +C   TP+G 
Sbjct: 459  AHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGA 518

Query: 516  NCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCK 574
              GLVKNL +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +
Sbjct: 519  AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 578

Query: 575  DSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVE--------- 624
            D    ++ LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VE         
Sbjct: 579  DPDQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRISRPLLIVEGQTLLLKKR 638

Query: 625  NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCE 684
            ++  +K  +  N  +Q L+  G++E + T EEE    A   + L ++ E      +THCE
Sbjct: 639  HIDMLKERDYNNDGWQELVGSGVVEYIDTLEEETVMIAMSPEDLRQEKEYAYCTTYTHCE 698

Query: 685  LDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQR 744
            +  + +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +
Sbjct: 699  IHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHK 757

Query: 745  PLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGM 804
            PL  T   +            L   EL  G N+IVA+  + GYNQEDS+++N +++ERG 
Sbjct: 758  PLVTTRSME-----------YLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGF 806

Query: 805  FRSEHIRSYK----AEVDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIG 857
            FRS   RSYK      + ++E Q +   R++   M N           D LDDDG    G
Sbjct: 807  FRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMRN--------AIYDKLDDDGIIAPG 858

Query: 858  ANLQSGDIVIGKY-----ADSGADHSIK----------LKHTERGMVQKVVLSSNDDGKN 902
              +   D+VIGK      AD   D + K          L+++E G+V +V+L+ N +G  
Sbjct: 859  IRVSGDDVVIGKTITLPEADDELDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYK 918

Query: 903  FSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQT 962
            F  + +R VR P +GDKF+S HGQKG  G    QE+ PF+ +G+ PDI+INPHA PSR T
Sbjct: 919  FCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFSCEGLTPDIIINPHAIPSRMT 978

Query: 963  PGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDG 1021
             G L+E   GK   +  KG        ATPF    +V  I+  L   G+   G E +Y+G
Sbjct: 979  IGHLIECIQGK--VSANKGEIGD----ATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNG 1032

Query: 1022 RTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMER 1081
             TG  + + +F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMER
Sbjct: 1033 HTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMER 1092

Query: 1082 DCLIAHGAAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDS 1139
            DC I+HGAA  L ERLF +SD Y++HIC  C    +AN+               C+ C +
Sbjct: 1093 DCQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRNNTFE---------CKGCKN 1143

Query: 1140 GDDIVKANVPYGAKLLCQELFSMGITLKF 1168
               I +  +PY AKLL QEL +M I  + 
Sbjct: 1144 KTQISQIRLPYAAKLLFQELMAMNIAPRL 1172


>gi|380024797|ref|XP_003696177.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB2-like [Apis florea]
          Length = 1175

 Score =  612 bits (1579), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 413/1229 (33%), Positives = 629/1229 (51%), Gaps = 148/1229 (12%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPS 74
            ++  +  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S
Sbjct: 16   EISSKLWQEACWIVINAYFDEKGLVRQQLDSFDEFIEMSVQRIVEDSPQIDLQAEAQHTS 75

Query: 75   KKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVY 134
             + E   R+  ++F Q+ L KP+ +  +G     M P  ARL N+TYS+ + V +     
Sbjct: 76   GEIENPVRHL-LKFEQIYLSKPTHWEKDGAPS-PMMPNEARLXNLTYSAPLYVDI----- 128

Query: 135  TQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDC 188
                 T    K G      ++ +  +     IG+IP+M++S  C + G+      E  +C
Sbjct: 129  -----TKTIVKDG------EDPIETQHQKTFIGKIPIMLRSKYCLLAGLSDRDLTELNEC 177

Query: 189  DFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR---------NRLIV 239
              D GGYFII G+EKV +AQE++    ++V +      AYKSE +          + L +
Sbjct: 178  PLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKSEIRSCLEHSSRPTSTLWI 237

Query: 240  RLVDMSKFEDIKG--GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
             ++  S     K   G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  +
Sbjct: 238  NMMAKSGASIKKSAIGQRIIAIIPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 297

Query: 297  LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
            + ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C
Sbjct: 298  MEMVKPSLDEAFVIQEQNVALNFIGTRGARPGVTKEKRIKYAREILQKEMLPHVGISDFC 357

Query: 343  MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                         +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL      
Sbjct: 358  -----------ETKKAYFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLL------ 400

Query: 403  HIAHARKRMAKALQRD--LYGDRTVR-----PIEYYLDASILTNGLSRAFSTGAWSHPFK 455
              A   + + K L ++  LY  + +       +E  +   I+T+GL  + +TG W    K
Sbjct: 401  --AFLFRGLFKNLMKEVRLYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 458

Query: 456  RTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGE 515
              +  +G+   L R     TL  LRR    +   GK+   R  H + WG +C   TP+G 
Sbjct: 459  AHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGA 518

Query: 516  NCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCK 574
              GLVKNL +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +
Sbjct: 519  AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 578

Query: 575  DSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVE--------- 624
            D    ++ LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VE         
Sbjct: 579  DPDQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRISRPLLIVEGQNLLLKKR 638

Query: 625  NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCE 684
            ++  +K  +  N  +Q L+  G++E + T EEE    A   + L ++ E      +THCE
Sbjct: 639  HIDMLKERDYNNDGWQELVGSGVVEYIDTLEEETVMIAMSPEDLRQEKEYAYCTTYTHCE 698

Query: 685  LDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQR 744
            +  + +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +
Sbjct: 699  IHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHK 757

Query: 745  PLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGM 804
            PL  T   +            L   EL  G N+IVA+  + GYNQEDS+++N +++ERG 
Sbjct: 758  PLVTTRSME-----------YLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGF 806

Query: 805  FRSEHIRSYK----AEVDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIG 857
            FRS   RSYK      + ++E Q +   R++   M N           D LDDDG    G
Sbjct: 807  FRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMRN--------AIYDKLDDDGIIAPG 858

Query: 858  ANLQSGDIVIGKY-----ADSGADHSIK----------LKHTERGMVQKVVLSSNDDGKN 902
              +   D+VIGK      AD   D + K          L+++E G+V +V+L+ N +G  
Sbjct: 859  IRVSGDDVVIGKTITLPEADDELDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYK 918

Query: 903  FSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQT 962
            F  + +R VR P +GDKF+S HGQKG  G    QE+ PF+ +G+ PDI+INPHA PSR T
Sbjct: 919  FCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFSCEGLTPDIIINPHAIPSRMT 978

Query: 963  PGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDG 1021
             G L+E   GK   +  KG        ATPF    +V  I+  L   G+   G E +Y+G
Sbjct: 979  IGHLIECIQGK--VSANKGEIGD----ATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNG 1032

Query: 1022 RTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMER 1081
             TG  + + +F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMER
Sbjct: 1033 HTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMER 1092

Query: 1082 DCLIAHGAAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDS 1139
            DC I+HGAA  L ERLF +SD Y++HIC  C    +AN+               C+ C +
Sbjct: 1093 DCQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRNNTFE---------CKGCKN 1143

Query: 1140 GDDIVKANVPYGAKLLCQELFSMGITLKF 1168
               I +  +PY AKLL QEL +M I  + 
Sbjct: 1144 KTQISQIRLPYAAKLLFQELMAMNIAPRL 1172


>gi|225562623|gb|EEH10902.1| DNA-dependent RNA polymerase II RPB140 [Ajellomyces capsulatus
            G186AR]
          Length = 1307

 Score =  612 bits (1579), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 410/1199 (34%), Positives = 612/1199 (51%), Gaps = 137/1199 (11%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGE--WRY 83
            C     SFF   GLVS Q++S++EFI   +Q+  +  G+  ++    P++        R 
Sbjct: 127  CWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPAEDEIDPVVLRR 186

Query: 84   ASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT-------- 135
              ++FG V L +PS   G+G     M P+ ARL+N+TY+S + + +  +V          
Sbjct: 187  YELKFGTVMLARPSVTEGDGATSI-MLPQEARLRNLTYASPLYLGITKRVTEGRERLIAE 245

Query: 136  -----QKRVTSDKFKTGREQYIQKE--VLSD---ETTNIIIGRIPVMVKSDLCWMKGVEK 185
                 Q    +D+ +  R  Y+  E   L++   E  N+ IGR+P+M+KS  C +K + +
Sbjct: 246  RDDAEQGEEDNDEERRSRGTYLHWEPKALNEDEPEEENVFIGRMPIMLKSKYCILKDLNE 305

Query: 186  ------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKR 234
                   +C +D GGYFII G+EKV +AQE+     + V      +   +    +S  ++
Sbjct: 306  QSLYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAVEK 365

Query: 235  NRLIVRLVDMSKF---EDIKGGEKVL---SVYFLSTEIPIWILFFALGVSSDKEIVNLID 288
               I+  + +  F   +  KGG       ++ ++ T+IPI ++F ALGV SD++I+N I 
Sbjct: 366  GSRILSQLSIKLFGKGDTSKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDEDILNHIC 425

Query: 289  FTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES----TEECMN 344
            +   D  +L +L   I +     D       AL ++ K     T    E       + + 
Sbjct: 426  YDRNDTPMLEMLKPCIEEGFVIQDR----EVALDFISKRGSSPTSMNHEKRVRYARDIIQ 481

Query: 345  TYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLEREL 400
                P +  ++    +KA FLGYMV  LLQ   GRR  D+RD F  KRL+LAG LL    
Sbjct: 482  KEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLF 541

Query: 401  KVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERI 460
            ++      K + K +QR +  +R +  +   + AS L+ GL  A +TG W    K     
Sbjct: 542  RILFMRVTKDLYKYVQRCVETNRQLY-LNIGVKASTLSGGLKYALATGNWGEQKKAASSK 600

Query: 461  SGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLV 520
            +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLV
Sbjct: 601  AGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLV 660

Query: 521  KNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSF 579
            KNL +   ++  +  EPI + +    ME L +          KVFV+G W+GV +D    
Sbjct: 661  KNLALMCCITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNATKVFVNGVWVGVHRDPSHL 720

Query: 580  VSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK----------- 628
            VS ++  RRR  +  +V + RD    E +IF DAGR+ RPL VVEN  K           
Sbjct: 721  VSTVQSLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVVENDPKSENCGSLVLSK 780

Query: 629  --IKSLEG---------------KNYTFQALLDHGIIELVGTEEEE---------DCCTA 662
              I  LE                + + +  L+  G++E V  EEEE         D  T+
Sbjct: 781  EHIHKLEADKELPPDLDPEERRERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPEDLETS 840

Query: 663  WGIK--YLLKDIEDKKPIK------------FTHCELDMSFLLGLSCGIIPFANHDHARR 708
              ++  + L + ++  P +            +THCE+  S +LG+   IIPF +H+ + R
Sbjct: 841  KQLQAGFSLPEEDNNDPNRRVRSTLSQKTHTWTHCEIHPSMILGICASIIPFPDHNQSPR 900

Query: 709  VLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPR 768
              YQS     QA+G   TN   R++T+++ L+YPQ+PL  T   +            L  
Sbjct: 901  NTYQS-AMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSME-----------FLKF 948

Query: 769  PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRS 828
             EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y        M V  R 
Sbjct: 949  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGMTVVERF 1008

Query: 829  SDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD---------------S 873
               M +   ++ K G  D +DDDG    G  +   DI+IGK A                +
Sbjct: 1009 EKPMRS-DTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKQHT 1067

Query: 874  GADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
              D S  L+ TE G+V +V++S+++D   F  V +R  + P +GDKF+S HGQKG +G  
Sbjct: 1068 KIDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGIT 1127

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
              QE+ PFT +GIVPD++INPHA PSR T   L+E  L K +++L      G +  ATPF
Sbjct: 1128 YRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSK-VSSL-----RGFEGDATPF 1181

Query: 994  ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
               +VD+I+  L   G+   G E +Y+G TG  + + +F+GPT+YQRL HM +DK+  R 
Sbjct: 1182 TDVTVDSISSLLREHGYQSRGFEVMYNGYTGRKLVAQVFLGPTYYQRLRHMVDDKIHARA 1241

Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKC 1112
             GP   LTRQPV  R R GG++FGEMERDC+IAHGA+A L ERLF +SD +++HIC  C
Sbjct: 1242 RGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHICDIC 1300


>gi|17552304|ref|NP_498047.1| Protein RPB-2 [Caenorhabditis elegans]
 gi|2507348|sp|Q10578.2|RPB2_CAEEL RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2
 gi|351058294|emb|CCD65728.1| Protein RPB-2 [Caenorhabditis elegans]
          Length = 1193

 Score =  612 bits (1578), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 406/1233 (32%), Positives = 627/1233 (50%), Gaps = 132/1233 (10%)

Query: 2    DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-D 60
            D  D  + D +   ++  E  +  C     ++F+E GLV  Q++S++EF++  +Q+   D
Sbjct: 11   DPMDGDYIDDSD--EISAEAWQEACWVVISAYFDEKGLVRQQLDSFDEFVQMNVQRIVED 68

Query: 61   SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
            S    +           E   ++ S++F Q+ L KP+ +  +G     M P  ARL+N+T
Sbjct: 69   SPPVELQSENQHLGTDMENPAKF-SLKFNQIYLSKPTHWEKDGA-PMPMMPNEARLRNLT 126

Query: 121  YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
            Y+S + V +       K VT D   T        E + D+   + +G++PVM++S  C +
Sbjct: 127  YASPLYVDIT------KVVTRDDSAT--------EKVYDK---VFVGKVPVMLRSSYCML 169

Query: 181  KGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE--- 231
              +      E  +C  D GGYF+I G+EKV +AQE++    ++V +      A+K+E   
Sbjct: 170  SNMTDRDLTELNECPLDPGGYFVINGSEKVLIAQEKMATNTVYVFSMKDGKYAFKTECRS 229

Query: 232  ---NKRNRLIVRLVDM-----SKFEDIKGGEKVLSVY-FLSTEIPIWILFFALGVSSDKE 282
               N         V+M        +    G++++ +  ++  EIPI I+F ALG  SD++
Sbjct: 230  CLENSSRPTSTMWVNMLARGGGGGKKTAMGQRIIGILPYIKQEIPIMIVFRALGFVSDRD 289

Query: 283  IVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLI 328
            I+  I +   D  ++ ++  S+ +A      N    F   R A         +KY  +++
Sbjct: 290  ILGHIIYDFNDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGAKPGVTREQRIKYAREIL 349

Query: 329  KGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKR 388
            +    P    +E C             +KA F+GYMV  LL A  GRR+ D+RD   NKR
Sbjct: 350  QKELLPHVGVSEHC-----------ETKKAFFIGYMVHRLLLAALGRRELDDRDHIGNKR 398

Query: 389  LELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTG 448
            L+LAG LL    +    +  K M    Q+ +  +     ++  +  S +T GL+ + +TG
Sbjct: 399  LDLAGPLLAFLFRSLFRNLLKEMRMTAQKYINKNDDF-ALDVCVKTSTITRGLTYSLATG 457

Query: 449  AWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICF 508
             W    K  +  +G+   L R     TL  LRR    +   GK+   R  H + WG +C 
Sbjct: 458  NWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRANSPIGREGKLAKPRQLHNTQWGMVCP 517

Query: 509  LSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDG 567
              TP+G+  GLVKNL +   +S  S+ EPI E L    ME L + +  ++    K+FV+G
Sbjct: 518  AETPEGQAVGLVKNLALMAYISVGSLPEPILEFLEEWSMENLEEVSPSAIADATKIFVNG 577

Query: 568  DWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVENM 626
             W+G+ ++    ++ L++ RR+ ++  ++V + RD    E+RI+ DAGR+ RPLL+VEN 
Sbjct: 578  AWVGIHREPDQLMTTLKKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVENQ 637

Query: 627  G-----------KIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDK 675
                        K  + E   YT+  L+  G++EL+ + EEE    A     + +D+   
Sbjct: 638  KLALKKRHIDQLKEAADEANKYTWSDLVGGGVVELIDSMEEETSMIAM----MPEDLRSG 693

Query: 676  KPI-KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDT 734
                  THCE+  + +LG+   IIPF +H+ + R  YQS     QA+G  TTN  +R+DT
Sbjct: 694  GYCDTHTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYTTNFHVRMDT 752

Query: 735  LSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLV 794
            L+H L+YPQ+PL  T   +            L   EL  G NAIVA+  + GYNQEDS++
Sbjct: 753  LAHVLYYPQKPLVTTRSME-----------YLRFNELPAGINAIVAILSYSGYNQEDSVI 801

Query: 795  MNRASLERGMFRSEHIRSYK---AEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDD 851
            MN ++++RG+FRS   RSY+   A +DN   ++  + + +  +      +    D LD+D
Sbjct: 802  MNNSAIDRGLFRSVFYRSYRDNEANLDNANEELIEKPTREKCS----GMRHSLYDKLDED 857

Query: 852  GFPFIGANLQSGDIVIGKYA-----DSGADHSIK----------LKHTERGMVQKVVLSS 896
            G    G  +   D++IGK       D   D S K          L+ +E G+V +V+LS 
Sbjct: 858  GIISPGMRVSGDDVIIGKTVALPDIDDDLDASGKKYPKRDASTFLRSSETGIVDQVMLSL 917

Query: 897  NDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHA 956
            N DG  F  + +R VR P +GDKF+S HGQKG +G +  QE+ PFT +G+ PDI+INPHA
Sbjct: 918  NSDGNKFVKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDIIINPHA 977

Query: 957  FPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFA-TPSVDAITEQLHRAGFSKWGT 1015
             PSR T G L+E   GK  A  G+         ATPF  T +V  I+  L   G+   G 
Sbjct: 978  VPSRMTIGHLIECLQGKLSANKGE------IGDATPFNDTVNVQKISGLLCEYGYHLRGN 1031

Query: 1016 ERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIK 1075
            E +Y+G TG+ + + IF GPT+YQRL HM +DK+  R  GP+  + RQP+  R R GG++
Sbjct: 1032 EVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIHSRARGPIQMMNRQPMEGRARDGGLR 1091

Query: 1076 FGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCR 1135
            FGEMERDC I+HGA   L ERLF +SD Y +++C  C         +V    +     C+
Sbjct: 1092 FGEMERDCQISHGATQFLRERLFEVSDPYHVYVCNNCG-------LIVVANLRTNSFECK 1144

Query: 1136 ICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
             C +   +    +PY  KLL QEL SM I  + 
Sbjct: 1145 ACRNKTQVSAVRIPYACKLLFQELMSMSIAPRL 1177


>gi|308487676|ref|XP_003106033.1| CRE-RPB-2 protein [Caenorhabditis remanei]
 gi|308254607|gb|EFO98559.1| CRE-RPB-2 protein [Caenorhabditis remanei]
          Length = 1207

 Score =  612 bits (1578), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 405/1239 (32%), Positives = 633/1239 (51%), Gaps = 138/1239 (11%)

Query: 1    MDSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF- 59
            M+ D N  TD     ++  E  +  C     ++F+E GLV  Q++S++EF++  +Q+   
Sbjct: 20   MEGDYNDETD-----EISAEAWQEACWVVISAYFDEKGLVRQQLDSFDEFVQMNVQRIVE 74

Query: 60   DSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNM 119
            DS    +           E   ++ S++F Q+ L KP+ +  +G     M P  ARL+N+
Sbjct: 75   DSPPVELQSENQHLGNDMENPAKF-SLKFNQIYLSKPTHWEKDGA-PMPMMPNEARLRNL 132

Query: 120  TYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCW 179
            TY+S + V +       K VT D   +  E+  +K         + +G++PVM++S  C 
Sbjct: 133  TYASPLYVDIT------KVVTRDD--SVNEKVYEK---------VFVGKVPVMLRSSYCM 175

Query: 180  MKGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-- 231
            +  +      E  +C  D GGYF+I G+EKV +AQE++    ++V +      A+K+E  
Sbjct: 176  LSNMTDRDLTELNECPLDPGGYFVINGSEKVLIAQEKMATNTVYVFSMKDGKYAFKTECR 235

Query: 232  ----NKRNRLIVRLVDM-----SKFEDIKGGEKVLSVY-FLSTEIPIWILFFALGVSSDK 281
                N         V+M        +    G++++ +  ++  EIPI I+F ALG  SD+
Sbjct: 236  SCLENSSRPTSTMWVNMLARGGGGGKKTAMGQRIIGILPYIKQEIPIMIVFRALGFVSDR 295

Query: 282  EIVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKL 327
            +I+  I +  +D  ++ ++  S+ +A      N    F   R A         +KY  ++
Sbjct: 296  DILGHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGAKPGVTREQRIKYAREI 355

Query: 328  IKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNK 387
            ++    P    +E C             +KA F+GYMV  LL A  GRR+ D+RD   NK
Sbjct: 356  LQKELLPHVGVSEHC-----------ETKKAFFIGYMVHRLLLAALGRRELDDRDHIGNK 404

Query: 388  RLELAGELLERELKVHIAH--ARKRMAKALQRDLYGDRTVR-----PIEYYLDASILTNG 440
            RL+LAG LL    +    +    K +   +Q  +   + +       ++  +  S +T G
Sbjct: 405  RLDLAGPLLAFLFRALFRNLLKEKMITSCIQMRMTAQKYINKNDDFALDVCVKTSTITRG 464

Query: 441  LSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHP 500
            L+ + +TG W    K  +  +G+   L R     TL  LRR    +   GK+   R  H 
Sbjct: 465  LAYSLATGNWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRANSPIGREGKLAKPRQLHN 524

Query: 501  SHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGG 559
            + WG +C   TP+G+  GLVKNL +   +S  S+ EPI E L    ME L + +  ++  
Sbjct: 525  TQWGMVCPAETPEGQAVGLVKNLALMAYISVGSLPEPILEFLEEWSMENLEEVSPSAIAD 584

Query: 560  KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILR 618
              K+FV+G W+G+ ++    ++ L++ RR+ ++  ++V + RD    E+RI+ DAGR+ R
Sbjct: 585  ATKIFVNGAWVGIHREPDQLMTTLKKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRVCR 644

Query: 619  PLLVVEN---------MGKIKSL-EGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYL 668
            PLL+VE+         + ++K + E   YT+  L+  G++EL+ + EEE    A   + L
Sbjct: 645  PLLIVEDQKLALRKRHIDQLKDIDEANKYTWSDLVGGGVVELIDSMEEETSMIAMMPEDL 704

Query: 669  LKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNP 728
               +        THCE+  + +LG+   IIPF +H+ + R  YQS     QA+G  TTN 
Sbjct: 705  RSGVYCDT---HTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYTTNF 760

Query: 729  SIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYN 788
             +R+DTL+H L+YPQ+PL  T   +            L   EL  G NAIVA+  + GYN
Sbjct: 761  HVRMDTLAHVLYYPQKPLVTTRSME-----------YLRFNELPAGINAIVAILSYSGYN 809

Query: 789  QEDSLVMNRASLERGMFRSEHIRSYK---AEVDNKEMQVKRRSSDDMVNFGKIQSKIGRV 845
            QEDS++MN ++++RG+FRS   RSY+   A +DN   ++  + + +  +      +    
Sbjct: 810  QEDSVIMNNSAIDRGLFRSVFYRSYRDNEANLDNANEELIEKPTREKCS----GMRHSLY 865

Query: 846  DSLDDDGFPFIGANLQSGDIVIGKYA-------DSGA--------DHSIKLKHTERGMVQ 890
            D LD+DG    G  +   D++IGK         D  A        D S  L+ +E G+V 
Sbjct: 866  DKLDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLDATGKKYPKRDASTFLRSSETGIVD 925

Query: 891  KVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDI 950
            +V+LS N+DG  F  + +R VR P +GDKF+S HGQKG +G +  QE+ PFT +G+ PDI
Sbjct: 926  QVMLSLNNDGNKFVKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDI 985

Query: 951  VINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFA-TPSVDAITEQLHRAG 1009
            +INPHA PSR T G L+E   GK   +  KG        ATPF  T +V  I+  L   G
Sbjct: 986  IINPHAVPSRMTIGHLIECLQGK--LSANKGEIGD----ATPFNDTVNVQKISGLLCEYG 1039

Query: 1010 FSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRK 1069
            +   G E +Y+G TG+ + + IF GPT+YQRL HM +DK+  R  GP+  + RQP+  R 
Sbjct: 1040 YHLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIHSRARGPIQMMNRQPMEGRA 1099

Query: 1070 RFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKV 1129
            R GG++FGEMERDC I+HGA   L ERLF +SD Y +++C  C         +V    + 
Sbjct: 1100 RDGGLRFGEMERDCQISHGATQFLRERLFEVSDPYHVYVCNNCG-------LIVVANLRT 1152

Query: 1130 RGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
                C+ C +   +    +PY  KLL QEL SM I  + 
Sbjct: 1153 NSFECKACRNKTQVSAVRIPYACKLLFQELMSMSIAPRL 1191


>gi|341896020|gb|EGT51955.1| CBN-RPB-2 protein [Caenorhabditis brenneri]
          Length = 1195

 Score =  612 bits (1577), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 400/1218 (32%), Positives = 624/1218 (51%), Gaps = 129/1218 (10%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPS 74
            ++  E  +  C     ++F+E GLV  Q++S++EF++  +Q+   DS    +        
Sbjct: 22   EISAEAWQEACWVVISAYFDEKGLVRQQLDSFDEFVQMNVQRIVEDSPPVELQSENQHLG 81

Query: 75   KKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVY 134
               E   ++ S++F Q+ L KP+ +  +G     M P  ARL+N+TY+S + V +     
Sbjct: 82   NDMENPAKF-SLKFNQIYLSKPTHWEKDGA-PMPMMPNEARLRNLTYASPLYVDIT---- 135

Query: 135  TQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDC 188
              K VT D             V+      + +G++PVM++S  C +  +      E  +C
Sbjct: 136  --KVVTRDD-----------SVVEKVYEKVFVGKVPVMLRSSYCMLSNMTDRDLTELNEC 182

Query: 189  DFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE------NKRNRLIVRLV 242
              D GGYF+I G+EKV +AQE++    ++V +      A+K+E      N         V
Sbjct: 183  PLDPGGYFVINGSEKVLIAQEKMATNTVYVFSMKDGKYAFKTECRSCLENSSRPTSTMWV 242

Query: 243  DM-----SKFEDIKGGEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
            +M        +    G++++ +  ++  EIPI I+F ALG  SD++I+  I +  ED  +
Sbjct: 243  NMLARGGGGGKKTAMGQRIIGILPYIKQEIPIMIVFRALGFVSDRDILGHIIYDFEDPEM 302

Query: 297  LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
            + ++  S+ +A      N    F   R A         +KY  ++++    P    +E C
Sbjct: 303  MEMVKPSLDEAFVIQEQNVALNFIGARGAKPGVTREQRIKYAREILQKELLPHVGVSEHC 362

Query: 343  MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                         +KA F+GYMV  LL A  GRR+ D+RD   NKRL+LAG LL    + 
Sbjct: 363  -----------ETKKAFFIGYMVHRLLLAALGRRELDDRDHIGNKRLDLAGPLLAFLFRA 411

Query: 403  HIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISG 462
               +  K M    Q+ +  +     ++  +  S +T GL+ + +TG W    K  +  +G
Sbjct: 412  LFRNLLKEMRMTAQKYINKNDDF-ALDVCVKTSTITRGLAYSLATGNWGDQKKAHQSRAG 470

Query: 463  IVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKN 522
            +   L R     TL  LRR    +   GK+   R  H + WG +C   TP+G+  GLVKN
Sbjct: 471  VSQVLNRLTYTATLSHLRRANSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKN 530

Query: 523  LGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVS 581
            L +   +S  S+ EPI E L    ME L + +  S+    K+FV+G W+G+ ++    ++
Sbjct: 531  LALMAYISVGSLPEPILEFLEEWSMENLEEVSPSSISDATKIFVNGSWVGIHREPDQLMT 590

Query: 582  ELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKS 631
             L++ RR+ ++  ++V + RD    E+RI+ DAGR+ RPLL+VE+         + ++K 
Sbjct: 591  TLKKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVEDQKLALKKTHIDQLKD 650

Query: 632  L-EGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPI-KFTHCELDMSF 689
            + E   +++  L+  G++EL+ + EEE    A     + +D+         THCE+  + 
Sbjct: 651  VDEANKFSWSDLVGGGVVELIDSMEEETSMIAM----MPEDLRTGGYCDTHTHCEIHPAM 706

Query: 690  LLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRT 749
            +LG+   IIPF +H+ + R  YQS     QA+G  TTN  +R+DTL+H L+YPQ+PL  T
Sbjct: 707  ILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTT 765

Query: 750  MISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEH 809
               +            L   EL  G NAIVA+  + GYNQEDS++MN ++++RG+FRS  
Sbjct: 766  RSME-----------YLRFNELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFRSVF 814

Query: 810  IRSYK---AEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIV 866
             RSY+   A +DN   ++  + + +  +      +    D LD+DG    G  +   D++
Sbjct: 815  YRSYRDNEANLDNANEELIEKPTREKCS----GMRHALYDKLDEDGIISPGMRVSGDDVI 870

Query: 867  IGKYA-------DSGA--------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQV 911
            IGK         D  A        D S  L+ +E G+V +V+LS N+DG  F  + +R V
Sbjct: 871  IGKTVALPDIDDDLDATGKKYPKRDASTFLRSSETGIVDQVMLSLNNDGNKFVKIRMRSV 930

Query: 912  RSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAAL 971
            R P +GDKF+S HGQKG +G +  QE+ PFT +G+ PDI+INPHA PSR T G L+E   
Sbjct: 931  RLPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDIIINPHAVPSRMTIGHLIECLQ 990

Query: 972  GKGIAALGKGICSGLKRYATPFA-TPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSL 1030
            GK  A  G+         ATPF  T +V  I+  L   G+   G E +Y+G TG+ + + 
Sbjct: 991  GKLSANKGE------IGDATPFNDTVNVQKISGLLCEYGYHLRGNEVMYNGHTGKKLTTQ 1044

Query: 1031 IFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAA 1090
            IF GPT+YQRL HM +DK+  R  GP+  + RQP+  R R GG++FGEMERDC I+HGA 
Sbjct: 1045 IFFGPTYYQRLKHMVDDKIHSRARGPIQMMNRQPMEGRARDGGLRFGEMERDCQISHGAT 1104

Query: 1091 ANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPY 1150
              L ERLF +SD Y +++C  C         +V    +     C+ C +   +    +PY
Sbjct: 1105 QFLRERLFEVSDPYHVYVCNNCG-------LIVVANLRTNSFECKACRNKTQVSAVRIPY 1157

Query: 1151 GAKLLCQELFSMGITLKF 1168
              KLL QEL SM I  + 
Sbjct: 1158 ACKLLFQELMSMSIAPRL 1175


>gi|324120660|dbj|BAJ78721.1| RNA polymerase II second largest subunit [Vespa analis insularis]
          Length = 1175

 Score =  610 bits (1573), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 411/1229 (33%), Positives = 630/1229 (51%), Gaps = 148/1229 (12%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPS 74
            ++  +  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S
Sbjct: 16   EISSKLWQEACWIVINAYFDEKGLVRQQLDSFDEFIEMSVQRIVEDSPQIDLQAEAQHTS 75

Query: 75   KKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVY 134
             + E   R+  ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +     
Sbjct: 76   GEIENPVRHL-LKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLTYSAPLYVDI---TK 130

Query: 135  TQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDC 188
            T ++   D  +T  ++               IG+IP+M++S  C + G+      E  +C
Sbjct: 131  TIEKDGEDPIETQHQK-------------TFIGKIPIMLRSKYCLLAGLSDRDLTELNEC 177

Query: 189  DFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR---------NRLIV 239
              D GGYFII G+EKV +AQE++    ++V +      AYK+E +          + L +
Sbjct: 178  PLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKAEIRSCLEHSSRPTSTLWI 237

Query: 240  RLVDMSKFEDIKG--GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
             ++  S     K   G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  +
Sbjct: 238  NMMAKSGASIKKSAIGQRIIAIIPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 297

Query: 297  LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
            + ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C
Sbjct: 298  MEMVKPSLDEAFVIQEQNVALNFIGTRGARPGVTKEKRIKYAREILQKEMLPHVGISDFC 357

Query: 343  MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                         +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL      
Sbjct: 358  -----------ETKKAYFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLL------ 400

Query: 403  HIAHARKRMAKALQRD--LYGDRTVR-----PIEYYLDASILTNGLSRAFSTGAWSHPFK 455
              A   + + K L ++  LY  + +       +E  +   I+T+GL  + +TG W    K
Sbjct: 401  --AFLFRGLFKNLMKEVRLYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 458

Query: 456  RTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGE 515
              +  +G+   L R     TL  LRR    +   GK+   R  H + WG +C   TP+G 
Sbjct: 459  AHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGA 518

Query: 516  NCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCK 574
              GLVKNL +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +
Sbjct: 519  AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 578

Query: 575  DSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVE--------- 624
            D    ++ LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VE         
Sbjct: 579  DPDQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRISRPLLIVEGQNLLLKKR 638

Query: 625  NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCE 684
            ++  +K  +  N  +Q L+  G++E + T EEE    A   + L ++ E      +THCE
Sbjct: 639  HIDMLKERDYNNDGWQELVGSGVVEYIDTLEEETVMIAMSPEDLRQEKEYAYCTTYTHCE 698

Query: 685  LDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQR 744
            +  + +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +
Sbjct: 699  IHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHK 757

Query: 745  PLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGM 804
            PL  T   +            L   EL  G N+IVA+  + GYNQEDS+++N +++ERG 
Sbjct: 758  PLVTTRSME-----------YLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGF 806

Query: 805  FRSEHIRSYK----AEVDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIG 857
            FRS   RSYK      + ++E Q +   R++   M N           D LDDDG    G
Sbjct: 807  FRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMRN--------AIYDKLDDDGIIAPG 858

Query: 858  ANLQSGDIVIGKY-----ADSGADHSIK----------LKHTERGMVQKVVLSSNDDGKN 902
              +   D+VIGK       D   D + K          L+++E G+V +V+L+ N +G  
Sbjct: 859  IRVSGDDVVIGKTITLPETDDELDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYK 918

Query: 903  FSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQT 962
            F  + +R VR P +GDKF+S HGQKG  G    QE+ PF+ +G+ PDI+INPHA PSR T
Sbjct: 919  FCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFSCEGLTPDIIINPHAIPSRMT 978

Query: 963  PGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDG 1021
             G L+E   GK   +  KG        ATPF    +V  I+  L   G+   G E +Y+G
Sbjct: 979  IGHLIECIQGK--VSANKGEIGD----ATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNG 1032

Query: 1022 RTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMER 1081
             TG  + + +F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMER
Sbjct: 1033 HTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMER 1092

Query: 1082 DCLIAHGAAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDS 1139
            DC I+HGAA  L ERLF +SD Y++HIC  C    +AN+               C+ C +
Sbjct: 1093 DCQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRNNTFE---------CKGCKN 1143

Query: 1140 GDDIVKANVPYGAKLLCQELFSMGITLKF 1168
               I +  +PY AKLL QEL +M I  + 
Sbjct: 1144 KTQISQVRLPYAAKLLFQELMAMNIAPRL 1172


>gi|320582153|gb|EFW96371.1| DNA-directed RNA polymerase II [Ogataea parapolymorpha DL-1]
          Length = 1275

 Score =  610 bits (1572), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 433/1292 (33%), Positives = 650/1292 (50%), Gaps = 190/1292 (14%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIV-EPGYDPSKKGEGEWRYA 84
            C     SFF E GLVS Q++S+ EFI++ +Q+      + I+ +P    ++  +   RY 
Sbjct: 21   CWTVISSFFEEKGLVSQQLDSFEEFIESSIQELVLEDKKLILDQPAQHITEDDDVNRRY- 79

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKF 144
             + FG + L KPS    +G     + P+ ARL+N+TYS+ + V+++  V  ++ +  D  
Sbjct: 80   EITFGDIFLSKPSQTEADGTTS-TLLPQEARLRNLTYSAPLYVEMKKMV--KESIDDDDV 136

Query: 145  KTGR---------EQYIQKEVLSDE------------------------------TTNII 165
             T +          +Y   E+  DE                              +  I 
Sbjct: 137  VTTQVVWYREGEITRYRNGEIEQDEMVIMPPNFDDDSDDIIEERHGIKVHRSGAESQTIF 196

Query: 166  IGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV- 218
            IG++P+M+KS  C + G+      E  +C FD GGYFII G+EKV +AQE+     + V 
Sbjct: 197  IGKVPIMLKSKFCSLYGLSEDELYEIRECPFDMGGYFIINGSEKVLIAQERSAANIVQVF 256

Query: 219  SNSMGWTVAYKSE-----NKRNRLI----VRLV--DMSKFEDIKGGEKV-LSVYFLSTEI 266
              S    V++ +E      K +RLI    V+L     S F+    G  +  ++ ++  +I
Sbjct: 257  KKSPPSPVSHIAELRSALEKGSRLISSIQVKLARGGASNFKSGGVGRSIKATLPYIKADI 316

Query: 267  PIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDK 326
            PI I+F ALGV  D +I+  I +   D  +L +L   I +        +    AL Y+ +
Sbjct: 317  PIVIVFRALGVIEDGDILQHICYDENDWQMLEMLKPCIEEGF----LIQSQEVALDYIGR 372

Query: 327  LIKGTTFPPGES-----TEECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRK 377
              +G +    +       ++ +     P +         KA FLGY+V  LL     R++
Sbjct: 373  --RGNSIGIKKERRIQYAKDILQREFLPHISQDSGYETNKAYFLGYIVNRLLLCALERKE 430

Query: 378  CDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDL-YGDRTVRPIEYYLDASI 436
             D+RD F  KRL+LAG LL    ++      + + + +QR +  GD     I   + ++ 
Sbjct: 431  PDDRDHFGKKRLDLAGPLLANLFRILFRKLSRDIYRYMQRCIERGDDF--NIVSAVKSNT 488

Query: 437  LTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDAR 496
            +T+GL  + +TG W    K     +G+   L R     TL  LRRT   +   GK+   R
Sbjct: 489  ITSGLKYSLATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPR 548

Query: 497  YPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASY 555
              H +HWG +C   TP+G+ CGLVKNL +    S  S  EPI   L   G+E L+D    
Sbjct: 549  QLHNTHWGLVCPAETPEGQACGLVKNLSLMACASVGSASEPITYLLEEWGLEPLSDYEPQ 608

Query: 556  SLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGR 615
                  +VF++G+W+G  +D    V  +R+ RR   +  +V + RD  + E +IF DAGR
Sbjct: 609  EHKNATRVFLNGNWVGTHRDPAMLVETMRQLRRSGTISPEVSLIRDIREREFKIFTDAGR 668

Query: 616  ILRPLLVVEN------MGKIKSL-----------------------EGKN-------YTF 639
            I RPL +V+N       G++K                         EG+        + +
Sbjct: 669  IYRPLFIVDNDPDSEHKGELKLTKEHCRKILDREVEEIVQDEEFDDEGQPLGPVQRVFGW 728

Query: 640  QALLDHGIIELVGTEEEEDCCTAWGIKYLL-----------KDIEDKKPIK-------FT 681
             +LL +GIIE +  EEEE    A   + L+           +D++  K IK       FT
Sbjct: 729  DSLLSNGIIEYLDAEEEETVLIAMSPEDLISSASAEVQKAERDLDPAKRIKNVVKAHSFT 788

Query: 682  HCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFY 741
            HCE+  S +LG++  IIPF +H+ + R  YQS     QA+G   TN S+R+DT+++ L+Y
Sbjct: 789  HCEIHPSMILGVAASIIPFPDHNQSPRNTYQS-AMGKQAMGVFLTNYSVRMDTMANILYY 847

Query: 742  PQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLE 801
            PQ+PL +T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++S++
Sbjct: 848  PQKPLAKTQSME-----------YLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSID 896

Query: 802  RGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVN-FGK------IQSKIGRVDSLDDDGFP 854
            RG+FRS   RSY        M  +RRS   +V  F K      +  K G  + LDDDG  
Sbjct: 897  RGLFRSLFFRSY--------MDQERRSGISVVEEFEKPMRSSTLGFKQGTYEKLDDDGLI 948

Query: 855  FIGANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDD 899
              G  +   DI+IGK                  +  D S  L+ TE G+V +V+L++N +
Sbjct: 949  APGVRVSGDDIIIGKTVPIPPDTEELGQRTKYHTKRDASTPLRTTESGIVDQVLLTTNAE 1008

Query: 900  GKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPS 959
            G  F+ V +R  + P +GDKF+S HGQKG +G     E+ PFT QGIVPD++INPHA PS
Sbjct: 1009 GLKFAKVRMRTTKVPQIGDKFASRHGQKGTIGITYRHEDMPFTAQGIVPDLIINPHAIPS 1068

Query: 960  RQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLY 1019
            R T   L+E  L K +A++      G +  ATPF   +VDA+++ L   G+   G E +Y
Sbjct: 1069 RMTVAHLIECLLSK-VASM-----RGYEGDATPFTDLTVDAVSKLLRENGYQSRGFEVMY 1122

Query: 1020 DGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEM 1079
            +G TG+ + + +F GPT+YQRL HM +DK+  R  GP   LTRQP+  R R GG++FGEM
Sbjct: 1123 NGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPYQNLTRQPMEGRARDGGLRFGEM 1182

Query: 1080 ERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDS 1139
            ERDC+IAHGAA  L ERL   SD++++HIC  C  + +VI  +     K     C+ C +
Sbjct: 1183 ERDCMIAHGAAGFLKERLMDSSDAFRVHICGIC-GLMSVIANL-----KKNQFECKSCKN 1236

Query: 1140 GDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
              +I + ++PY AKLL QEL SM I  +  T+
Sbjct: 1237 KTNIYQIHIPYAAKLLFQELMSMNIAPRLYTQ 1268


>gi|408400353|gb|EKJ79435.1| hypothetical protein FPSE_00366 [Fusarium pseudograminearum CS3096]
          Length = 1269

 Score =  608 bits (1569), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 421/1282 (32%), Positives = 639/1282 (49%), Gaps = 181/1282 (14%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEG-EWRYA 84
            C     SFF   GL S Q +S++EF +  +Q   + + +  ++    PS  G     R  
Sbjct: 24   CWTVISSFFETKGLASQQTDSFDEFTQRTVQDLVNEYADISLDQQNPPSSYGVPIALRRY 83

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKV--QFQVYTQKRV--- 139
             ++FG V + +PS  +   G    + P   R +N+TYSS   +K+  +  V   K +   
Sbjct: 84   EIKFGSVMVSRPSI-SETDGTVASLLPYECRDRNLTYSSPAYIKITKKVSVAIDKEIPLH 142

Query: 140  ------TSDKFKTGREQY-IQKEVLSD-------ETTNIIIGRIPVMVKSDLCWMKG--- 182
                   ++  +TG     +  EV  D       +   I +G++P+MVKS +C +     
Sbjct: 143  EMDEEQQAEYKRTGEHPTKLHWEVEEDGDSMKEGQPNMIFVGKMPIMVKSKICHLSQHTD 202

Query: 183  ---VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSE-NK 233
                   +C +D GGYF+I G+EKV +AQE+     + V      +   +T   +S   K
Sbjct: 203  EELFTLNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSPFTYTAEIRSALEK 262

Query: 234  RNRLIVRLVD--MSKFEDIKGG---EKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLID 288
             +RLI  L+   + K +  +GG       S+ F+ +++P+ I+F ALGV SD++I+N I 
Sbjct: 263  GSRLISSLMMKILGKGDSARGGFGQTIQTSLPFVKSDLPVAIVFRALGVVSDEDILNHIC 322

Query: 289  FTCEDCSILNILFASIHDA----DNKC-----------DEFRKGRNALKYVDK-LIKGTT 332
            +   D  +L +L   I +A    D +            D+   GR     V K +++  T
Sbjct: 323  YDRNDSQMLEMLRPCIEEAFCVQDREVALDFIGKRGNRDQASLGREKRVRVAKDILQKET 382

Query: 333  FPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELA 392
             P           ++  S     +KA FLGYMV  LLQ   GRR+ D+RD F  KRL+LA
Sbjct: 383  LP-----------HISQSEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLDLA 431

Query: 393  GELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSH 452
            G LL +  +  I    + ++  L+R +  +R    +   +    L+NGL  + +TG W  
Sbjct: 432  GPLLAKLFRGIIRRMNQELSNYLKRCVESNRNFN-LNVAIKPGTLSNGLKYSLATGNWGD 490

Query: 453  PFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTP 512
              K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP
Sbjct: 491  QKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETP 550

Query: 513  DGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIG 571
            +G+ CGLVKNL +   VS  S  EP+ + + + GME + +          KVFV+G W+G
Sbjct: 551  EGQACGLVKNLSLMCYVSVGSPGEPLIDFMVSRGMEVVEEYEPTRYPHATKVFVNGSWVG 610

Query: 572  VCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------ 625
            V  +  + V+ +   RR+  L  +V + RD    E +IF DAGR++RP+  V+       
Sbjct: 611  VHPEPRALVNSVLETRRKSYLQFEVSLVRDIRDREFKIFSDAGRVMRPVFTVQQEDDYET 670

Query: 626  -------------MGKIKSLEGKNYT-------FQALLDHGIIELVGTEEEED---CCTA 662
                         + KI   + +  +       +Q L+  G +E +  EEEE    C T 
Sbjct: 671  GLTKGQLVLTKDLVNKIAQEQAEPPSDPSERIGWQGLIRSGAVEYIDAEEEETAMICMTP 730

Query: 663  WGIKYLLKD-------IEDKKPIK--------------------------FTHCELDMSF 689
              ++   +         E++K  K                          +THCE+  S 
Sbjct: 731  EDLEIYREQKRDEVNLTEEEKQAKLEAEKREQEEERNKRLKTKVNPTTHMYTHCEIHPSM 790

Query: 690  LLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRT 749
            +LG+   IIPF +H+ + R  YQS     QA+GF  TN S R+DT+++ L+YPQ+PL  T
Sbjct: 791  ILGICASIIPFPDHNQSPRNTYQS-AMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATT 849

Query: 750  MISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEH 809
               +            L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS  
Sbjct: 850  RSME-----------FLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLF 898

Query: 810  IRSYKAEVDNKEMQVKRRSSD---DMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIV 866
             RSY     ++E +V    ++          ++ K G  D LD+DG    G  +   DI+
Sbjct: 899  FRSYS----DQEKKVGLNYTEIFEKPFQQTTLRMKHGTYDKLDEDGIVAPGVRVSGEDII 954

Query: 867  IGKYA-------DSGA--------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQV 911
            IGK A       D G         D S  L+ TE G+V +V+L+ N D   +  V +R  
Sbjct: 955  IGKTAPIDQENQDLGTRTQTHQRRDISTPLRSTENGIVDQVILTVNADNVKYVKVRVRTT 1014

Query: 912  RSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAAL 971
            + P +GDKF+S HGQKG +G    QE+ PF+ +G+ PDI+INPHA PSR T   L+E  L
Sbjct: 1015 KIPQIGDKFASRHGQKGTIGVTYRQEDMPFSREGLTPDIIINPHAIPSRMTIAHLIECLL 1074

Query: 972  GKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLI 1031
             K ++ L      G++  ATPF   +VD++++ L + G+   G E +Y+G TG  +R+ +
Sbjct: 1075 SK-VSTL-----EGMEGDATPFTDVTVDSVSDILRKHGYQSRGFEVMYNGHTGRKLRAQV 1128

Query: 1032 FIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAA 1091
            F GPT+YQRL HM +DK+  R  GPV  +TRQPV  R R GG++FGEMERDC+IAHGAAA
Sbjct: 1129 FFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAA 1188

Query: 1092 NLHERLFTLSDSYQMHICRKC---KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANV 1148
             L ERLF +SD++++H+C  C     +AN+ ++            CR C +   I + ++
Sbjct: 1189 FLKERLFEVSDAFRVHVCEICGLMTPIANLSKQSFE---------CRPCKNKTKIAQIHI 1239

Query: 1149 PYGAKLLCQELFSMGITLKFDT 1170
            PY AKLL QEL +M I  +  T
Sbjct: 1240 PYAAKLLFQELQAMNIAARMFT 1261


>gi|340939429|gb|EGS20051.1| RNA polymerase-like protein [Chaetomium thermophilum var.
            thermophilum DSM 1495]
          Length = 1286

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 433/1279 (33%), Positives = 640/1279 (50%), Gaps = 182/1279 (14%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYAS 85
            C +   ++F++ GLVS QI+S+NEF ++ +Q   + +    +    D    G+ E R  +
Sbjct: 48   CWEVISAYFDKNGLVSQQIDSFNEFTQSTIQSLVNEYAHLTL----DHPNPGDDEGRDIA 103

Query: 86   MR-----FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKV----------- 129
            MR     F  V L KP+     G     + P   R +N+TYS+ M  KV           
Sbjct: 104  MRRYDIHFQDVLLSKPTLTETTGETTF-LLPYECRDRNLTYSAPMYCKVTKRARIAINEP 162

Query: 130  -----------QFQVYTQKRVTSDKFK---TGREQYIQKEVLS---DETTNIIIGRIPVM 172
                       +    T +  T+ +++   TG  +  +   L    D+   I +G++P+M
Sbjct: 163  IPYHELDDEQREHLAKTGEHPTTIRWEEEDTGPREAPRDGPLKGDKDKADYIFLGKLPIM 222

Query: 173  VKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWT 225
            VKS +C + G +        +C +D GGYFII G+EKV +AQE+     + +     G +
Sbjct: 223  VKSKVCHLYGEDDDSLFLLNECPYDQGGYFIINGSEKVLIAQERSAANIVQIFKKPPGGS 282

Query: 226  VAYKSE-----NKRNRLIVRLVDMSKFEDIKGGEK-------VLSVYFLSTEIPIWILFF 273
            VAY +E      K +RLI  L    K       EK        +++ ++  +I + I+F 
Sbjct: 283  VAYVAEIRSALEKGSRLISSL--QMKLHTKASPEKGRLANTVSVTLPYVREDISLAIVFR 340

Query: 274  ALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTF 333
            ALGV SD++I+N I +   D  +L  L   I +A   C + R+   AL ++ K   G   
Sbjct: 341  ALGVVSDEDILNHICYDRTDTQMLEALRPCIEEA--FCIQDREV--ALDFIGKRGNGNA- 395

Query: 334  PPGE-------STEECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRD 382
              G+       + ++ +   + P +  ++    +KA FLGYMV  LLQ   GRR  D+RD
Sbjct: 396  --GQNRVNRIRAAKDLLQKEMLPHISQSEGCETRKAFFLGYMVHKLLQCALGRRDPDDRD 453

Query: 383  DFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLS 442
             F  KRL+LAG LL +  +  I    + +   ++R +  ++    +   +  S LTN L 
Sbjct: 454  HFGKKRLDLAGPLLAKLFRGVIRRMTQDLMSYMKRCIDTNKNFS-LALGIKHSTLTNALK 512

Query: 443  RAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSH 502
             + +TG W    K     +G+   L R     TL  LRRT   +   GK+   R  H +H
Sbjct: 513  YSLATGNWGEQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTH 572

Query: 503  WGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKF 561
            WG +C   TP+G+ CGLVKNL +   VS  +  EPI E +    ME L +          
Sbjct: 573  WGLVCPAETPEGQACGLVKNLSLMCYVSVGTPAEPIIEFMIARNMEVLEEYEPLRYPNAT 632

Query: 562  KVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLL 621
            KVFV+G W+GV +D    VS ++  RR+  +  +V + RD    E +IF DAGR++RPL 
Sbjct: 633  KVFVNGTWVGVHQDPKHLVSLVQGLRRKNIINFEVSLVRDIRDREFKIFSDAGRVMRPLF 692

Query: 622  VVENMGK----------------IKSLE-----GKNYT----FQALLDHGIIELVGTEEE 656
             VE                    I  LE     GK +     +  LL  G +E +  EEE
Sbjct: 693  TVEQEDNGENGVEKGQLLLKKEHIARLERDKELGKYHPDYWGWDGLLKSGAVEYLDAEEE 752

Query: 657  ED---CCTA-----WGIKYLLKDIEDKKPI--------------KFTHCELDMSFLLGLS 694
            E    C T      + +  L   + D   +               +THCE+  S LLG+ 
Sbjct: 753  ETAMICMTPEDLDMYRLTKLGFQVHDNSGVGNNRIRTKMNMTTHAYTHCEIHPSMLLGVC 812

Query: 695  CGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDC 754
              IIPF +H+ + R  YQS     QA+GF  TN S R+DT+++ L+YPQ+PL  T   + 
Sbjct: 813  ASIIPFPDHNQSPRNTYQSAM-GKQAMGFFLTNYSHRMDTMANILYYPQKPLATTRSME- 870

Query: 755  LGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSY- 813
                       L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   RSY 
Sbjct: 871  ----------FLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYT 920

Query: 814  ----KAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGK 869
                +  ++  EM  K   ++       ++ K    D LD DG    G  +   DI+IGK
Sbjct: 921  DCEKRVGINIVEMFEKPNRTE------TLRMKHSTYDKLDADGIVAPGTRVSGDDIIIGK 974

Query: 870  Y-------ADSGA--------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSP 914
                    A+ G+        D S  L+ TE G+V  V+L++N DG  +  V +R  + P
Sbjct: 975  TCPINPENAELGSRTAQHVKRDVSTALRSTENGIVDSVILTTNQDGMRYVKVRVRTTKIP 1034

Query: 915  CLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKG 974
             +GDKF+S HGQKG +G    QE+ PFT +GI PDI+INPHA PSR T   L+E  L K 
Sbjct: 1035 QIGDKFASRHGQKGTIGVTYRQEDMPFTCEGITPDIIINPHAIPSRMTIAHLIECLLSK- 1093

Query: 975  IAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIG 1034
            ++ L      G++  ATPF   +VD+++  L   G+   G E +Y+G TG  +R+ +F G
Sbjct: 1094 VSTL-----KGMEGDATPFTEVTVDSVSALLREHGYQSRGFEIMYNGHTGRKLRAQVFFG 1148

Query: 1035 PTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLH 1094
            PT+YQRL HM +DK+  R  GP+  +TRQPV  R R GG++FGEMERDC+IAHGAAA L 
Sbjct: 1149 PTYYQRLRHMVDDKIHARARGPLQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLK 1208

Query: 1095 ERLFTLSDSYQMHICRKC---KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYG 1151
            ERLF +SD++++HIC  C     +AN+ ++            CR C +   I + ++PY 
Sbjct: 1209 ERLFEVSDAFRVHICEICGLMTPIANLTKQSFE---------CRPCKNKTKIAQVHIPYA 1259

Query: 1152 AKLLCQELFSMGITLKFDT 1170
            AKLL QEL +M I  +  T
Sbjct: 1260 AKLLFQELMAMNIAARMFT 1278


>gi|342888977|gb|EGU88188.1| hypothetical protein FOXB_01326 [Fusarium oxysporum Fo5176]
          Length = 1270

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 419/1284 (32%), Positives = 638/1284 (49%), Gaps = 183/1284 (14%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEG-EWRYA 84
            C     SFF   GL S Q +S++EF +  +Q   + +    ++    P+  G     R  
Sbjct: 23   CWTVISSFFETKGLASQQTDSFDEFTQTMVQDLVNEYSTITLDQHNPPAPPGVNIALRRY 82

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYS--SRMKVKVQFQVYTQKRV--- 139
             ++FG V + +PS  +   G   ++ P   R +N+TY+  + +K+  +  V   K +   
Sbjct: 83   EIKFGSVMVSRPSM-SETDGTVTNLLPYECRDRNLTYAAPTYLKITKKVSVAVDKEIPLH 141

Query: 140  ------TSDKFKTGREQY-----IQKEVLS----DETTNII-IGRIPVMVKSDLCWMKGV 183
                   ++  +TG         ++++  S    DE + +I IG++P+MVKS +C +   
Sbjct: 142  EMDDEQQAEYKRTGENPTKLVWEVEEDAGSIKAEDEPSEMIFIGKMPIMVKSKICHLSSH 201

Query: 184  EKGD------CDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSE- 231
               D      C +D GGYF+I G+EKV +AQE+     + V      +   +T   +S  
Sbjct: 202  SDEDLFMLNECPYDQGGYFVINGSEKVLIAQERSAANIVQVFKKAQPSPYTYTAEIRSAL 261

Query: 232  NKRNRLIVRLVD--MSKFEDIKGG---EKVLSVYFLSTEIPIWILFFALGVSSDKEIVNL 286
             K +RLI  L      K +  +GG       ++ F+  ++P+ I+F ALGV SD++I+N 
Sbjct: 262  EKGSRLISSLTMKLYGKGDSARGGFGQTIQATLPFVKADLPVAIVFRALGVVSDEDILNH 321

Query: 287  IDFTCEDCSILNILFASIHDA----DNKC-----------DEFRKGRNALKYVDK-LIKG 330
            I +   D  +L +L   I +A    D +            D+   GR     V K +++ 
Sbjct: 322  ICYDRNDSQMLEMLRPCIEEAFCVQDREVALDFIGKRGNRDQASLGREKRVRVAKDILQK 381

Query: 331  TTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLE 390
             T P           ++  S     +KA FLGYMV  LLQ   GRR+ D+RD F  KRL+
Sbjct: 382  ETLP-----------HISQSEGSETRKAFFLGYMVHKLLQCALGRREPDDRDHFGKKRLD 430

Query: 391  LAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAW 450
            LAG LL +  +  I      ++  L+R +  +R    +   +  S L+NGL  + +TG W
Sbjct: 431  LAGPLLAKLFRGIIRRINTELSNYLKRCVESNRNFN-LTVAIKPSTLSNGLKYSLATGNW 489

Query: 451  SHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLS 510
                K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   
Sbjct: 490  GDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAE 549

Query: 511  TPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDW 569
            TP+G+ CGLVKNL +   VS  S  +P+ E + N GME + +          K+FV+G W
Sbjct: 550  TPEGQACGLVKNLSLMCYVSVGSPADPLIEFMINRGMEVVEEYEPTRYPHATKIFVNGSW 609

Query: 570  IGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE----- 624
            +GV  D    V+++   RR+  +  +V + RD    E +IF DAGR++RP+  V      
Sbjct: 610  VGVHADPKHLVNQVLDTRRKSYVQFEVSLVRDIRDREFKIFSDAGRVMRPVFTVHQEDDY 669

Query: 625  --NMGKIKSLEGKNYT-------------------FQALLDHGIIELVGTEEEED---CC 660
              N+ K + +  K++                    +  L+  G +E +  EEEE    C 
Sbjct: 670  ENNITKGQLVLTKDHVNRLAQEQAEPPANPADKFGWDGLIREGAVEYLDAEEEETAMICM 729

Query: 661  TAWGIKYLLKDIEDKKPIK---------------------------------FTHCELDM 687
            T   ++   +   D+  +                                  +THCE+  
Sbjct: 730  TPEDLELYREQKNDEATLTEEEKRAKQEAEKREQEEDRNKRLKTKVNPTTHMYTHCEIHP 789

Query: 688  SFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLF 747
            S +LG+   IIPF +H+ + R  YQS     QA+GF  TN S R+DT+++ L+YPQ+PL 
Sbjct: 790  SMILGICASIIPFPDHNQSPRNTYQS-AMGKQAMGFFLTNYSRRMDTMANILYYPQKPLA 848

Query: 748  RTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRS 807
             T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS
Sbjct: 849  TTRSME-----------FLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRS 897

Query: 808  EHIRSYKAEVDNKEMQVKRRSSD---DMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGD 864
               RSY     ++E +V    ++          ++ K G  D LD+DG    G  +   D
Sbjct: 898  LFFRSYS----DQEKKVGLNYTEIFEKPFQQTTLRMKHGTYDKLDEDGIVAPGVRVSGED 953

Query: 865  IVIGKYA-------DSGA--------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLR 909
            I+IGK A       D G         D S  L+ TE G+V +V+L+ N D   +  V +R
Sbjct: 954  IIIGKTAPIDQENQDLGTRTQSHQRRDISTPLRSTENGIVDQVILTVNADNVKYVKVRVR 1013

Query: 910  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEA 969
              + P +GDKF+S HGQKG +G    QE+ PF+ +G+ PDI+INPHA PSR T   L+E 
Sbjct: 1014 TTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFSREGLTPDIIINPHAIPSRMTIAHLIEC 1073

Query: 970  ALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRS 1029
             L K ++ L      G++  ATPF   +VD+++E L + G+   G E +Y+G TG  +R+
Sbjct: 1074 LLSK-VSTL-----EGMEGDATPFTDVTVDSVSELLRKHGYQSRGFEVMYNGHTGRKLRA 1127

Query: 1030 LIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA 1089
             +F GPT+YQRL HM +DK+  R  GPV  +TRQPV  R R GG++FGEMERDC+IAHGA
Sbjct: 1128 QVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGA 1187

Query: 1090 AANLHERLFTLSDSYQMHICRKC---KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKA 1146
            AA L ERLF +SD++++H+C  C     +AN+ ++            CR C +   I + 
Sbjct: 1188 AAFLKERLFEVSDAFRVHVCEICGLMTPIANLSKQSFE---------CRPCKNKTKIAQI 1238

Query: 1147 NVPYGAKLLCQELFSMGITLKFDT 1170
            ++PY AKLL QEL +M I  +  T
Sbjct: 1239 HIPYAAKLLFQELQAMNIAARMFT 1262


>gi|290973756|ref|XP_002669613.1| DNA-directed RNA polymerase II [Naegleria gruberi]
 gi|284083163|gb|EFC36869.1| DNA-directed RNA polymerase II [Naegleria gruberi]
          Length = 1233

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 413/1217 (33%), Positives = 626/1217 (51%), Gaps = 122/1217 (10%)

Query: 31   VSFFNEYG-LVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYD-------PSKKGEGEWR 82
             +FF++ G LV  Q++S+N FI+  +Q+  +   E ++              ++ + +++
Sbjct: 59   TAFFDQKGGLVRQQLDSFNVFIQQTIQELVEGTSEIMLSSSASYKVGQKRDQQQNQPQFK 118

Query: 83   YASMRFGQVTLDKPSFFAGNGGDE--HDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVT 140
            Y +++FGQ+ L +P+    +   E    ++P  ARL+N+TYSS + V +  +  T +  +
Sbjct: 119  Y-NIKFGQIYLSRPTVDTKSEQIEAYSSVYPNDARLRNLTYSSPLYVDIHEKKITLRPGS 177

Query: 141  SDKFKT---GREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK----GDCDFDHG 193
            +    T   G E      V S     I +G IP+M++S  C +  V+     G+C FD G
Sbjct: 178  TANIYTAQVGEEDTDDFIVQSKIHNQIPLGSIPIMLRSVYCMLSEVQDVTDVGECPFDSG 237

Query: 194  GYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNR---------LIVRLVDM 244
            GYFII G EKV +AQE++    ++V        +Y +E + ++           +++   
Sbjct: 238  GYFIINGGEKVIIAQERMATNHVYVFKKAMSKFSYVAEIRSSQEGGYRAPSGFFIKM--E 295

Query: 245  SKFEDIKGGEKVL---SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILF 301
             K  + KGG   L   ++ ++  +IPI ILF AL   +DKEI+  I +   D  ++ +L 
Sbjct: 296  PKQGNKKGGIGGLIHATIPYIRQDIPIVILFRALSCQADKEIIKHIIYNLNDGQMMELLR 355

Query: 302  ASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSL----H 352
             S+ +A            AL Y+ K  +G T    +       EE +   + P +     
Sbjct: 356  PSLEEAV----AVLSNTVALDYIGK--RGNTLGASQEKRMNHAEEILQKEMLPHVGIGDT 409

Query: 353  GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMA 412
               +KA F+GYMV  LL    GRR  D+RD + NKRLELAG LL+           K M 
Sbjct: 410  SYDRKAYFIGYMVHRLLLGALGRRPLDDRDHYGNKRLELAGGLLQGLFLQLFKKVVKEME 469

Query: 413  KALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANP 472
              L++ +     +  +   ++   +T GL  + +TG W     R  R +G+   L R   
Sbjct: 470  STLKKSILKSSEI-DVAPAVNKRTITKGLQYSLATGNWGVQGSRDIR-AGVAQVLNRLTY 527

Query: 473  LQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTS 532
              TL  LRR    ++ +GK    R  H + WG IC   TP+G  CGLVKNL +   ++  
Sbjct: 528  TSTLSHLRRLNTPIERSGKQAAPRQLHNTQWGVICPAETPEGGACGLVKNLALMSYITVG 587

Query: 533  ILEPIFEQLFNS-GMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKE 591
              +    ++ +  G+ KL +     L    KVF++G W+GV       V  LR  RR   
Sbjct: 588  TDKTHISKMLDELGINKLHELDESDLNKYTKVFLNGMWMGVHHTPDELVKHLRVLRRTGA 647

Query: 592  LPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE--------NMGKIKSLEGKNYTFQALL 643
            +  QV I RD  + EVRI+ D+GR  RPL +V+            +++L      +  LL
Sbjct: 648  VDMQVSIVRDVREREVRIWCDSGRCARPLFIVDRDHDTLFIKNQHVQALRENTMNWDNLL 707

Query: 644  DHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIK---------FTHCELDMSFLLGLS 694
            + G++EL+ TEEEE    A   + L++        K         +TH E+  S +LG+ 
Sbjct: 708  EQGLVELIDTEEEESIMIAMDFRELVEKRSSANEGKSRKGGSRQPYTHAEIHPSMILGIL 767

Query: 695  CGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDC 754
              IIPF +H+ + R  YQS     QA+G   TN   R+DTL+H L+YPQRPL  T   + 
Sbjct: 768  GSIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFQQRMDTLAHVLYYPQRPLVTTQPMEY 826

Query: 755  LGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYK 814
            L    +G        EL  GQNA+VA+  + GYNQEDS++MN+++++RG+FRS   R+Y 
Sbjct: 827  LR---FG--------ELPAGQNAVVAIACYSGYNQEDSVIMNQSAIDRGLFRSVFYRTYS 875

Query: 815  AEVDNKEMQVKRRSSDDMVNFGKIQS------KIGRVDSLDDDGFPFIGANLQSGDIVIG 868
               D++    +++ +  + NF K +       K    + L+DDG    G  +   DI+IG
Sbjct: 876  ---DHE----RKKGNFLLENFEKPKRDTTAGMKTSTYEKLEDDGIIAPGVRVSGSDIIIG 928

Query: 869  KYA-------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPC 915
            K                +  D S  L+  E G+V  VV++++ +G  F  + +R VR P 
Sbjct: 929  KTVPLPEESAKQKTSRQTRLDMSTPLRSNENGIVDTVVVTTDSEGFKFVKIKVRVVRIPQ 988

Query: 916  LGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGI 975
            +GDKFSS HGQKG  G    QE+ PFT +GIVPDI++NPHA PSR T GQL+E  LGK I
Sbjct: 989  IGDKFSSRHGQKGTCGITYRQEDLPFTREGIVPDIIVNPHAIPSRMTVGQLIECLLGK-I 1047

Query: 976  AALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGP 1035
            ++L     SG +  ATPF   +V+  +E LH  G+ K   E +++G TG  + + IFIGP
Sbjct: 1048 SSL-----SGNEGDATPFTDANVNYFSEMLHSLGYQKRANEVMFNGHTGRKLEAQIFIGP 1102

Query: 1036 TFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHE 1095
            T+YQRL HM +DK+  R  GP+  LTRQPV  R R GG++FGEMERDC+I+HG+AA L E
Sbjct: 1103 TYYQRLKHMVDDKIHSRARGPLQNLTRQPVEGRARDGGLRFGEMERDCMISHGSAAWLKE 1162

Query: 1096 RLFTLSDSYQMHICRKC--KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAK 1153
            RLF +SD Y++HIC  C     AN+ Q+            C  CD+     +  +PY  K
Sbjct: 1163 RLFQVSDEYRVHICNVCGMMATANIKQQQFK---------CDACDNKTSFSQVFIPYAFK 1213

Query: 1154 LLCQELFSMGITLKFDT 1170
            L+ QEL +M + ++  T
Sbjct: 1214 LMIQELMAMNLAVRIIT 1230


>gi|307182559|gb|EFN69752.1| DNA-directed RNA polymerase II subunit RPB2 [Camponotus floridanus]
          Length = 1178

 Score =  607 bits (1566), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 406/1222 (33%), Positives = 626/1222 (51%), Gaps = 134/1222 (10%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPS 74
            ++  +  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       +
Sbjct: 19   EISSKLWQEACWILINAYFDEKGLVRQQLDSFDEFIEMSVQRIVEDSPQIDLQAEAQHTT 78

Query: 75   KKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVY 134
             + E   R+  ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +     
Sbjct: 79   GEIENPVRHL-LKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLTYSAPLYVDI----- 131

Query: 135  TQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDC 188
                 T    K G      ++ +  +     IG+IP+M++S  C + G+      E  +C
Sbjct: 132  -----TKTIVKDG------EDPVETQHQKTFIGKIPIMLRSKYCLLAGLSDRDLTELNEC 180

Query: 189  DFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR---------NRLIV 239
              D GGYFII G+EKV +AQE++    ++V +      AYK+E +          + L +
Sbjct: 181  PLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKAEIRSCLEHSSRPTSTLWI 240

Query: 240  RLVDMSKFEDIKG--GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
             ++  S     K   G++++++  ++  EIPI ++F ALG  +D++I+  I +  +D  +
Sbjct: 241  NMMAKSGASIKKSAIGQRIIAIIPYIKQEIPIMVVFRALGFVADRDILEHIIYDFDDPEM 300

Query: 297  LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
            + ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C
Sbjct: 301  MEMVKPSLDEAFVIQEQNVALNFIGTRGAKPGVTKEKRIKYAREILQKEMLPHVGISDFC 360

Query: 343  MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                         +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL      
Sbjct: 361  -----------ETKKAYFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLL------ 403

Query: 403  HIAHARKRMAKALQRD--LYGDRTVR-----PIEYYLDASILTNGLSRAFSTGAWSHPFK 455
              A   + + K L ++  LY  + +       +E  +   I+T+GL  + +TG W    K
Sbjct: 404  --AFLFRGLFKNLMKEVRLYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 461

Query: 456  RTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGE 515
              +  +G+   L R     TL  LRR    +   GK+   R  H + WG +C   TP+G 
Sbjct: 462  AHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGA 521

Query: 516  NCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCK 574
              GLVKNL +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +
Sbjct: 522  AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 581

Query: 575  DSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVE--------- 624
            D    ++ LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VE         
Sbjct: 582  DPDQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRISRPLLIVEGQNLLLKKR 641

Query: 625  NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCE 684
            ++  +K  +  N  +Q L+  G++E + T EEE    A     L +D E      +THCE
Sbjct: 642  HIDMLKERDYNNDGWQELVGSGVVEYIDTLEEETVMIAMSPDDLKQDKEYAYCTTYTHCE 701

Query: 685  LDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQR 744
            +  + +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +
Sbjct: 702  IHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHK 760

Query: 745  PLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGM 804
            PL  T   +            L   EL  G N+IVA+  + GYNQEDS+++N +++ERG 
Sbjct: 761  PLVTTRSME-----------YLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGF 809

Query: 805  FRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGD 864
            FRS   RSYK E ++K++  +    +          +    D LDDDG    G  +   D
Sbjct: 810  FRSVFYRSYK-EAESKKIGDQEEQFEKPSRLTCQGMRNAIYDKLDDDGIIAPGIRVSGDD 868

Query: 865  IVIGKY-----ADSGADHSIK----------LKHTERGMVQKVVLSSNDDGKNFSVVSLR 909
            ++IGK       D   D + K          L+++E G+V +V+L+ N +G  F  + +R
Sbjct: 869  VIIGKTITLPETDDELDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVR 928

Query: 910  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEA 969
             VR P +GDKF+S HGQKG  G    QE+ PF+ +G+ PDI+INPHA PSR T G L+E 
Sbjct: 929  SVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFSCEGLTPDIIINPHAIPSRMTIGHLIEC 988

Query: 970  ALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVR 1028
              GK   +  KG        ATPF    +V  I+  L   G+   G E +Y+G TG  + 
Sbjct: 989  IQGK--VSANKGEIGD----ATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKIN 1042

Query: 1029 SLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG 1088
            + +F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC I+HG
Sbjct: 1043 AQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHG 1102

Query: 1089 AAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKA 1146
            AA  L ERLF +SD Y++HIC  C    +AN+               C+ C +   I + 
Sbjct: 1103 AAQFLRERLFEVSDPYRIHICNFCGLIAIANLRNNTFE---------CKGCKNKTQISQI 1153

Query: 1147 NVPYGAKLLCQELFSMGITLKF 1168
             +PY AKLL QEL +M I  + 
Sbjct: 1154 RLPYAAKLLFQELMAMNIAPRL 1175


>gi|332022245|gb|EGI62560.1| DNA-directed RNA polymerase II subunit RPB2 [Acromyrmex echinatior]
          Length = 1178

 Score =  607 bits (1565), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 409/1237 (33%), Positives = 635/1237 (51%), Gaps = 160/1237 (12%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSK 75
            ++  +  +  C     ++F+E GLV  Q++S++EFI+  +Q+        IVE    P  
Sbjct: 19   EISSKLWQEACWILINAYFDEKGLVRQQLDSFDEFIEMSVQR--------IVEDS--PQI 68

Query: 76   KGEGEWRYAS----------MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRM 125
            + + E ++ +          ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ +
Sbjct: 69   ELQAEAQHTTGEIEKPVKHLLKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLTYSAPL 127

Query: 126  KVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV-- 183
             V +     T ++   D  +T  ++               IG+IP+M++S  C + G+  
Sbjct: 128  YVDI---TKTIEKDGEDPVETQHQK-------------TFIGKIPIMLRSKYCLLAGLSD 171

Query: 184  ----EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR----- 234
                E  +C  D GGYFII G+EKV +AQE++    ++V +      AYK+E +      
Sbjct: 172  RDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKAEIRSCLEHS 231

Query: 235  ----NRLIVRLVDMSKFEDIKG--GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLI 287
                + L + ++  S     K   G++++++  ++  EIPI ++F ALG  +D++I+  I
Sbjct: 232  SRPTSTLWINMMAKSGASIKKSAIGQRIIAIIPYIKQEIPIMVVFRALGFVADRDILEHI 291

Query: 288  DFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTF 333
             +  +D  ++ ++  S+ +A      N    F   R A         +KY  ++++    
Sbjct: 292  IYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGTRGAKPGVTKEKRIKYAREILQKEML 351

Query: 334  PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAG 393
            P    ++ C             +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG
Sbjct: 352  PHVGISDFC-----------ETKKAYFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAG 400

Query: 394  ELLERELKVHIAHARKRMAKALQRD--LYGDRTVR-----PIEYYLDASILTNGLSRAFS 446
             LL        A   + + K L ++  LY  + +       +E  +   I+T+GL  + +
Sbjct: 401  PLL--------AFLFRGLFKNLMKEVRLYAQKFIDRGKDFNLELAIKTKIITDGLRYSLA 452

Query: 447  TGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKI 506
            TG W    K  +  +G+   L R     TL  LRR    +   GK+   R  H + WG +
Sbjct: 453  TGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGML 512

Query: 507  CFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFV 565
            C   TP+G   GLVKNL +   +S  S   PI E L    ME L + A  ++    K+FV
Sbjct: 513  CPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFV 572

Query: 566  DGDWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVE 624
            +G W+G+ +D    ++ LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VE
Sbjct: 573  NGCWVGIHRDPDQLMATLRKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRISRPLLIVE 632

Query: 625  ---------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDK 675
                     ++  +K  +  N  +Q L+  G++E + T EEE    A     L ++ E  
Sbjct: 633  GQNLLLQTRHINMLKERDYNNDGWQELVGSGVVEYIDTLEEETVMIAMSPDDLRQEKEYA 692

Query: 676  KPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTL 735
                +THCE+  + +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL
Sbjct: 693  YCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTL 751

Query: 736  SHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVM 795
            +H L+YP +PL  T   +            L   EL  G N+IVA+  + GYNQEDS+++
Sbjct: 752  AHVLYYPHKPLVTTRSME-----------YLRFRELPAGINSIVAILCYTGYNQEDSVIL 800

Query: 796  NRASLERGMFRSEHIRSYKA----EVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDD 851
            N +++ERG FRS   RSYK     ++ ++E Q ++ S    +    +++ I   D LDDD
Sbjct: 801  NASAVERGFFRSVFYRSYKESESKKIGDQEEQFEKPSR---LTCSGMRNAI--YDKLDDD 855

Query: 852  GFPFIGANLQSGDIVIGKY-----ADSGADHSIK----------LKHTERGMVQKVVLSS 896
            G    G  +   D++IGK       D   D + K          L+++E G+V +V+L+ 
Sbjct: 856  GIIAPGIRVSGDDVIIGKTITLPETDDELDSTTKRFTKRDASTFLRNSETGIVDQVMLTL 915

Query: 897  NDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHA 956
            N +G  F  + +R VR P +GDKF+S HGQKG  G    QE+ PF+ +G+ PDI+INPHA
Sbjct: 916  NSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFSSEGLTPDIIINPHA 975

Query: 957  FPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGT 1015
             PSR T G L+E   GK   +  KG        ATPF    +V  I+  L   G+   G 
Sbjct: 976  IPSRMTIGHLIECIQGK--VSANKGEIGD----ATPFNDAVNVQKISTLLQEYGYHLRGN 1029

Query: 1016 ERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIK 1075
            E +Y+G TG  + + +F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++
Sbjct: 1030 EVMYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLR 1089

Query: 1076 FGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPY 1133
            FGEMERDC I+HGAA  L ERLF +SD Y++HIC  C    +AN+               
Sbjct: 1090 FGEMERDCQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRNNTFE--------- 1140

Query: 1134 CRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
            C+ C +   I +  +PY AKLL QEL +M I  +  T
Sbjct: 1141 CKGCKNKTQIAQIRLPYAAKLLFQELMAMNIAPRLMT 1177


>gi|320031539|gb|EFW13500.1| DNA-dependent RNA polymerase II RPB140 [Coccidioides posadasii str.
            Silveira]
          Length = 1205

 Score =  606 bits (1563), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 409/1202 (34%), Positives = 605/1202 (50%), Gaps = 143/1202 (11%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RY 83
            C     SFF   GLVS Q++S++EFI   +Q+  +  G+  ++    P +        R 
Sbjct: 25   CWTVISSFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTIAPDEDDPDPVMVRR 84

Query: 84   ASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKR----- 138
              ++FG V L +PS   G+G     M P+ ARL+N+TY+S + + +  ++   +      
Sbjct: 85   YELKFGTVMLARPSMTEGDGATSI-MLPQEARLRNLTYASPLYLGITKKIAEGRERSLAE 143

Query: 139  ---------VTSDKFKTGREQYIQ---KEVLSDET--TNIIIGRIPVMVKSDLCWMKGVE 184
                        D+ +  R  Y+Q   K +  DE    NI IG++P+M+KS  C +K + 
Sbjct: 144  RDEDDDEPDAKGDEERRARGTYLQWEPKALPEDEADEENIFIGKMPIMLKSKYCILKDLG 203

Query: 185  K------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENK 233
            +       +C +D GGYFII G+EKV +AQE+     + V      +   +    +S  +
Sbjct: 204  EHALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAVE 263

Query: 234  RNRLIVRLVDMSKF---EDIKGG--EKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLI 287
            +   I+  + +  F   +  KGG    + S   ++ T+IPI ++F ALGV SD++I+N I
Sbjct: 264  KGSRILSQLSIKLFAKGDSSKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDEDILNHI 323

Query: 288  DFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES----TEECM 343
             +   D  +L +L   I +     D       AL ++ K     T    E       + +
Sbjct: 324  CYDRNDTPMLEMLKPCIEEGFVIQDR----EVALDFISKRGSSPTSMNHEKRVRYARDII 379

Query: 344  NTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERE 399
                 P +  ++    +KA FLGYMV  LLQ   GRR  D+RD F  KRL+LAG LL   
Sbjct: 380  QKEFLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDVDDRDHFGKKRLDLAGPLLANL 439

Query: 400  LKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTER 459
             +V      K + K +QR +  +R +  +   + AS LT GL  A +TG W    K    
Sbjct: 440  FRVLFMRLTKDLYKYVQRCVETNRQLY-LNIGVKASTLTGGLKYALATGNWGEQKKAASS 498

Query: 460  ISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGL 519
             +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGL
Sbjct: 499  KAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGL 558

Query: 520  VKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLS 578
            VKNL +   ++  +  EPI + +    ME L +          K+FV+G W+GV +D   
Sbjct: 559  VKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTKIFVNGVWVGVHRDPSH 618

Query: 579  FVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK---------- 628
             VS ++  RRR  +  +V +  D    E +IF DAGR+ RPL VV+N  K          
Sbjct: 619  LVSTVQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSENSGSLVLT 678

Query: 629  ---IKSLEG---------------KNYTFQALLDHGIIELVGTEEEE-----------DC 659
               I+ LE                + Y +  L+  G++E V  EEEE           + 
Sbjct: 679  KEHIRKLEADKEIPADLDPEERRERYYGWDGLVKSGVVEYVDAEEEETIMIVMSPEDLEV 738

Query: 660  CTAWGIKYLLK-DIED----------KKPIKFTHCELDMSFLLGLSCGIIPFANHDHARR 708
               +   Y+ + D  D          +K   +THCE+  S +LG+   IIPF +H+ + R
Sbjct: 739  SKQYQAGYIPEEDTSDPNRRVRSKLSQKAHTWTHCEIHPSMILGICASIIPFPDHNQSPR 798

Query: 709  VLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPR 768
              YQS     QA+G   TN   R++T+++ L+YPQ+PL  T   +            L  
Sbjct: 799  NTYQS-AMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSME-----------FLKF 846

Query: 769  PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRS 828
             EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y        + V  R 
Sbjct: 847  RELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVERF 906

Query: 829  SDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD---------------S 873
               M +   ++ K G  D +DDDG    G  +   DI+IGK A                +
Sbjct: 907  EKPMRS-DTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPESEELGQRTKQHT 965

Query: 874  GADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
              D S  L+ TE G+V +V++S++++   F  V +R  + P +GDKF+S HGQKG +G  
Sbjct: 966  KLDVSTPLRSTESGIVDQVLVSTSNEDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVT 1025

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRY---A 990
              QE+ PFT +GIVPD++INPHA PSR T   L+E  L K          S L+ Y   A
Sbjct: 1026 FRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSK---------VSSLRGYEGDA 1076

Query: 991  TPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVK 1050
            TPF   +VD+++  L   G+   G E +Y+G TG  + + IF+GPT+YQRL HM +DK+ 
Sbjct: 1077 TPFTDVTVDSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQIFLGPTYYQRLRHMVDDKIH 1136

Query: 1051 FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICR 1110
             R  GP   LTRQPV  R R GG++FGEMERDC+IAHGA+A L ERLF +SD +++HIC 
Sbjct: 1137 ARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRIHICD 1196

Query: 1111 KC 1112
             C
Sbjct: 1197 IC 1198


>gi|237512129|gb|ACQ99756.1| RNA polymerase IV, partial [Heliosperma oliverae]
          Length = 363

 Score =  606 bits (1562), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 289/369 (78%), Positives = 324/369 (87%), Gaps = 8/369 (2%)

Query: 641  ALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPF 700
             LLD GI+EL+G EEEEDCCTAW IKYL    + K   K+THCELDMSFLLG+SCGIIPF
Sbjct: 1    TLLDKGILELIGVEEEEDCCTAWEIKYLFMGDKGKGLEKYTHCELDMSFLLGVSCGIIPF 60

Query: 701  ANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGY 760
            ANHDHARRVLYQS+KHS QAIG+ +TNP+IR+DTLSHQ++YPQRPLFR++I+D LGKP +
Sbjct: 61   ANHDHARRVLYQSEKHSGQAIGYASTNPNIRIDTLSHQMYYPQRPLFRSVIADALGKPDH 120

Query: 761  --GHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVD 818
              G N  LP+ E +NGQNAIVAVNVHLGYNQEDS+VMNRASLERGMFR+EHIRSYKAEVD
Sbjct: 121  TLGRNQRLPKSEFFNGQNAIVAVNVHLGYNQEDSIVMNRASLERGMFRTEHIRSYKAEVD 180

Query: 819  NKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHS 878
            NK+    RR  DD ++FGKIQSK+GRVDSLDDDGFP IGANLQSGDI+IG+ ++SG DHS
Sbjct: 181  NKDSLENRRKFDDAISFGKIQSKLGRVDSLDDDGFPHIGANLQSGDIIIGRCSESGXDHS 240

Query: 879  IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQEN 938
            IKLKHTE+GMVQKVVLS+NDDGKNF+VVSLRQVRSPCLGDKFSSMHGQKGVLG+LESQEN
Sbjct: 241  IKLKHTEKGMVQKVVLSANDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGYLESQEN 300

Query: 939  FPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSV 998
            FPFT QGIVPDIVINPHAFPSRQTP QLLEAALGKGIA      C G  RY TPF+TPSV
Sbjct: 301  FPFTKQGIVPDIVINPHAFPSRQTPAQLLEAALGKGIA------CGGTLRYTTPFSTPSV 354

Query: 999  DAITEQLHR 1007
            ++ITEQLHR
Sbjct: 355  ESITEQLHR 363


>gi|406864058|gb|EKD17104.1| DNA-directed RNA polymerase II subunit RPB2 [Marssonina brunnea f.
            sp. 'multigermtubi' MB_m1]
          Length = 1266

 Score =  605 bits (1560), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 408/1206 (33%), Positives = 615/1206 (50%), Gaps = 159/1206 (13%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSK-KGEGEWRYA 84
            C     SFF   GLVS Q++S++EF+   +Q+  +   +  ++    PS  +     R  
Sbjct: 32   CWMVISSFFEAKGLVSQQVDSFDEFVSTTMQELVEENSQLTLDQNNPPSADENPIALRRY 91

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKV--QFQVYTQKRVTSD 142
             ++FG V L +P+   G+G  +  M P+ ARL+N+TYSS + +++     V  ++ V  +
Sbjct: 92   EIKFGTVLLSRPAMTEGDGTTQV-MLPQEARLRNLTYSSPLYLEMTKNVSVAVERNVPLN 150

Query: 143  KFKTGREQ-------YIQKEVLSDE-------------TTNIIIGRIPVMVKSDLCWMKG 182
            +    +E        +  + V  DE                + IG++P+M+KS  C +K 
Sbjct: 151  ELDDEQEAEMAATGIHPTRLVWEDEDGREAGPDKIEPTPDRVFIGKLPIMLKSKYCILKD 210

Query: 183  VEKGD------CDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE---- 231
            +++ D      C +D GGYFII G+EKV +AQE+     + V   S+     Y +E    
Sbjct: 211  LDEDDLYAWNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFQKSLPSPTPYVAEIRSA 270

Query: 232  -NKRNRLI----VRLVDMSKFEDIKGGEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVN 285
              K +RLI    ++L           G+ + S   ++  ++PI ++F ALGV SD++I+N
Sbjct: 271  LEKGSRLISQMSIKLFSKGDGGRGGFGQTIKSTLPYIRADVPIAVVFRALGVVSDEDILN 330

Query: 286  LIDFTCEDCSILNILFASIHDADNKCD-----EF--RKGRNALKYVDKLIKGTTFPPGES 338
             I +   D  +L +L   I +A    D     +F  ++G+N+    DK +K         
Sbjct: 331  HICYDRNDTQMLEMLKPCIEEAFVIQDREVALDFIGKRGQNSTLTRDKRVK--------Y 382

Query: 339  TEECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGE 394
              + M   L P +  ++    +KA FLGYMV  +LQ   GRR+ D+RD F  KRL+LAG 
Sbjct: 383  ARDIMQKELLPHISQSEGSETRKAFFLGYMVHKMLQCALGRRETDDRDHFGKKRLDLAGP 442

Query: 395  LLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPF 454
            LL +  +         + K L+  +  ++    +   + A+ +TNGL  + +TG W    
Sbjct: 443  LLAKLFRGLFRRLTSDVYKYLKLCVENNKEFN-LALGVKATTMTNGLKYSLATGNWGDQK 501

Query: 455  KRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDG 514
            K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G
Sbjct: 502  KAASSTAGVSQVLNRYTFSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEG 561

Query: 515  ENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVC 573
            + CGLVKNL +   V+  +  +PI E +    ME L +          KVFV+G W+GV 
Sbjct: 562  QACGLVKNLALMCYVTVGTPSDPIIEFMIQRNMEVLEEYEPLRSPNATKVFVNGVWVGVH 621

Query: 574  KDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN-------- 625
            +D    V  ++  RR   +  +V + RD    E +IF DAGR+ RPL VV+N        
Sbjct: 622  RDPGHLVKTVQHLRRSHLISHEVSLIRDIRDREFKIFTDAGRVCRPLFVVDNDVESPNKG 681

Query: 626  -----MGKIKSLEGKN---------------YTFQALLDHGIIELVGTEEEE-------- 657
                    I+ LE                  + FQ L++ G++E V  EEEE        
Sbjct: 682  NLVLNKDHIRRLEEDQHLHANTDPALKDELYFGFQGLINEGVVEYVDAEEEETIMIVMTP 741

Query: 658  -DCCTAWGIKYLLKDIED---------KKPIK-----FTHCELDMSFLLGLSCGIIPFAN 702
             D   +  I+   K   D         K P+      +THCE+  S +LG+   IIPF +
Sbjct: 742  EDLDISRQIQAGYKIRPDNSGDLNKRVKAPVNPTAHIWTHCEIHPSMILGICASIIPFPD 801

Query: 703  HDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGH 762
            H+ + R  YQS     QA+G   TN  +R+DT+++ L+YPQ+PL  T   +         
Sbjct: 802  HNQSPRNTYQS-AMGKQAMGVFLTNYDVRMDTMANILYYPQKPLATTRSME--------- 851

Query: 763  NHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEM 822
               L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y         
Sbjct: 852  --FLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGIFRSLFYRAYTD------- 902

Query: 823  QVKRRSSDDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGAD 876
            Q KR   + + +F K      ++ K G  D LD+DG    G  +   DI+IGK A   AD
Sbjct: 903  QEKRIGMNALESFEKPYRNDTMKLKQGTYDKLDEDGLVAPGVRVSGDDIIIGKTAPLPAD 962

Query: 877  H---------------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFS 921
                            S  L+ TE G+V +V+L++N +G+ F  V +R  + P +GDKF+
Sbjct: 963  SQDFGIRNKAHTKRDASTPLRSTENGIVDQVLLTTNSEGQKFVKVRMRTTKIPQIGDKFA 1022

Query: 922  SMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKG 981
            S HGQKG +G     E+ PFT QGIVPD++INPHA PSR T   L+E  L K ++ L   
Sbjct: 1023 SRHGQKGTIGITYRHEDMPFTCQGIVPDLIINPHAIPSRMTIAHLIECQLSK-VSTL--- 1078

Query: 982  ICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRL 1041
               GL+  ATPF   +VD++++ L   G+   G E +Y G TG  + + +F+GPT+YQRL
Sbjct: 1079 --RGLEGDATPFTEVTVDSVSKLLRNHGYHSRGFEIMYHGHTGRKMMAQVFLGPTYYQRL 1136

Query: 1042 IHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLS 1101
             HM +DK+  R  GP+  LTRQPV  R R GG++FGEMERDC+I+HGAA+ L ERLF +S
Sbjct: 1137 RHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMISHGAASFLKERLFEVS 1196

Query: 1102 DSYQMH 1107
            D++++H
Sbjct: 1197 DAFRVH 1202


>gi|237512131|gb|ACQ99757.1| RNA polymerase IV, partial [Heliosperma tommasinii]
          Length = 362

 Score =  604 bits (1557), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 288/368 (78%), Positives = 323/368 (87%), Gaps = 8/368 (2%)

Query: 641  ALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPF 700
             LLD GI+EL+G EEEEDCCTAW IKYL    + K   K+THCELDMSFLLG+SCGIIPF
Sbjct: 1    TLLDKGILELIGVEEEEDCCTAWEIKYLFMGDKGKGLEKYTHCELDMSFLLGVSCGIIPF 60

Query: 701  ANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGY 760
            ANHDHARRVLYQS+KHS QAIG+ +TNP+IR+DTLSHQ++YPQRPLFR++I+D LGKP +
Sbjct: 61   ANHDHARRVLYQSEKHSGQAIGYASTNPNIRIDTLSHQMYYPQRPLFRSVIADALGKPDH 120

Query: 761  --GHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVD 818
              G N  LP+ E +NGQNAIVAVNVHLGYNQEDS+VMNRASLERGMFR+EHIRSYKAEVD
Sbjct: 121  TLGRNQRLPKSEFFNGQNAIVAVNVHLGYNQEDSIVMNRASLERGMFRTEHIRSYKAEVD 180

Query: 819  NKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHS 878
            NK+    RR  DD ++FGKIQSK+GRVDSLDDDGFP IGANLQSGDI+IG+ ++SG DHS
Sbjct: 181  NKDSLENRRKFDDAISFGKIQSKLGRVDSLDDDGFPHIGANLQSGDIIIGRCSESGXDHS 240

Query: 879  IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQEN 938
            IKLKHTE+GMVQKVVLS+NDDGKNF+VVSLRQVRSPCLGDKFSSMHGQKGVLG+LESQEN
Sbjct: 241  IKLKHTEKGMVQKVVLSANDDGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGYLESQEN 300

Query: 939  FPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSV 998
            FPFT QGIVPDIVINPHAFPSRQTP QLLEAALGKGIA      C G  RY TPF+TPSV
Sbjct: 301  FPFTKQGIVPDIVINPHAFPSRQTPAQLLEAALGKGIA------CGGTLRYTTPFSTPSV 354

Query: 999  DAITEQLH 1006
            ++ITEQLH
Sbjct: 355  ESITEQLH 362


>gi|308798899|ref|XP_003074229.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
 gi|116000401|emb|CAL50081.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
          Length = 999

 Score =  603 bits (1554), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 378/1045 (36%), Positives = 564/1045 (53%), Gaps = 93/1045 (8%)

Query: 172  MVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SN 220
            M++SD C + G       E G+C +D GGYF+I G+EKV +AQE++    ++V      +
Sbjct: 1    MLRSDYCSLHGHTDKELTELGECPYDEGGYFVINGSEKVLIAQERMSTNHVYVFEKKQPS 60

Query: 221  SMGWTVAYKSENKR-----NRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFAL 275
               W    +S+ +R     +  ++R +     +D  G  +  ++ ++ T+IPI+++F AL
Sbjct: 61   KFMWQAECRSQPERGSRGASSCVMRQMHAVGTKDAPGPIRC-TLPYIRTDIPIFVVFRAL 119

Query: 276  GVSSDKEIVNLIDFTCEDCSILNILFASIHDA------DNKCDEFRKGRNA--------L 321
            G  +DK+I+  I +   D  ++ +L  SI +A      +   D   K  +A        +
Sbjct: 120  GFVADKDILEHICYDLADNEMMEMLRPSIEEAFVIQSQEVALDFIGKRGSAVGVSREKRI 179

Query: 322  KYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNR 381
            KY  ++++    P     E+C             +KA FLGYM+  LL    GRR  D+R
Sbjct: 180  KYAKEILQKELLPHVGVREDC-----------ETKKAYFLGYMIHRLLLCSLGRRPEDDR 228

Query: 382  DDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGL 441
            D + NKRL+L G LL +  +       K +    QR +   + ++ ++  + A  +T GL
Sbjct: 229  DHYGNKRLDLGGPLLAQLFRQLFRKLTKDVRLYCQRCIDSGKEIQ-LQLAIKAKTITQGL 287

Query: 442  SRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPS 501
              + +TG W     +  R +G+   L R +   TL  LRR    +   GK+   R  H S
Sbjct: 288  KYSLATGNWGSQGAQDIR-AGVSQVLNRLSYSSTLSHLRRINSPIGREGKLAKPRQLHNS 346

Query: 502  HWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGK 560
             WG IC   TP+G+  GLVKNL +  LVS  S  EPI E L    ME L + +   +   
Sbjct: 347  LWGMICPAETPEGQAVGLVKNLALMALVSVGSPSEPILEFLDEWTMENLEEISPSLIAES 406

Query: 561  FKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPL 620
             K+F++G W+GV +D    V  LR+ RR+ ++ + V +  D    E+R++ D GR  RPL
Sbjct: 407  TKIFLNGVWVGVHRDPADLVRTLRKLRRQCDVDSSVSVVHDIRLKELRLYTDYGRCTRPL 466

Query: 621  LVVENMGK-------IKSLEGKN---YTFQALLDHGIIELVGTEEEEDCCTAWGIKYLL- 669
             +V++  K       I+ L  K+   Y++  L+  G IE V TEEEE    +  I  L  
Sbjct: 467  FIVDDDQKLRIKKQHIELLTEKDVTGYSWNELVTSGFIEYVDTEEEETTMISMTIDDLAA 526

Query: 670  -KDIEDKK---PIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPT 725
             +   D+K    I++THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   
Sbjct: 527  ARQSADRKTGVAIRYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS-AMGKQAMGMYV 585

Query: 726  TNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHL 785
            TN  IR+DTL + LFYPQ+PL  T   +      Y H   LP      G NA+VA+  + 
Sbjct: 586  TNYQIRMDTLGYVLFYPQKPLVTTRAME------YLHFRELP-----AGCNAVVAIMCYT 634

Query: 786  GYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRV 845
            GYNQEDS++MN+++++RG+FRS + RS+K E + K+  + R   +       +  + G  
Sbjct: 635  GYNQEDSVLMNQSAIDRGLFRSLYYRSFKDE-EKKQGSLSREEFERPDRDTCLGMRHGTY 693

Query: 846  DSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSV 905
            D LDDDG  +  A L            S  D S  +KH E G++ +V+L++ND G  F  
Sbjct: 694  DKLDDDGLIYDSAVLSK--------RFSKKDCSTGMKHAETGIIDQVLLTTNDQGLRFVK 745

Query: 906  VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 965
            + +R +R+P +GDKFSS HGQKG +G   +QE+ PFT +GI PDI++NPHA PSR T GQ
Sbjct: 746  LRVRSMRTPQVGDKFSSRHGQKGTVGMTYTQEDMPFTCEGITPDIIVNPHAIPSRMTIGQ 805

Query: 966  LLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGE 1025
            L+E  +GK  A +GK      +  ATPF   + + I+  LH+ G+ K G E +Y+G TG 
Sbjct: 806  LVECIMGKVAACMGK------EGDATPFTPVTAEDISTMLHKCGYQKRGNEVMYNGHTGR 859

Query: 1026 MVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLI 1085
            M+ + IFIGPT+YQRL HM +DK+  R  GPV  LTRQP+  R R GG++FGEMERDC++
Sbjct: 860  MLDAQIFIGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPMEGRSRDGGLRFGEMERDCIM 919

Query: 1086 AHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVK 1145
            +HGAA+ L ERL   SD+Y++H+C+KC  +A      V   +      C+       +V+
Sbjct: 920  SHGAASFLKERLMDQSDAYRIHVCQKCGLIA------VANLKNQTFECCKNPSERTSVVQ 973

Query: 1146 ANVPYGAKLLCQELFSMGITLKFDT 1170
              VPY  KLL QEL SM I  +  T
Sbjct: 974  VMVPYACKLLFQELMSMAIAPRLIT 998


>gi|312381454|gb|EFR27200.1| hypothetical protein AND_06234 [Anopheles darlingi]
          Length = 1954

 Score =  602 bits (1551), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 399/1168 (34%), Positives = 604/1168 (51%), Gaps = 123/1168 (10%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPS 74
            ++  E  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S
Sbjct: 16   EISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELTAEAQHSS 75

Query: 75   KKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVY 134
             + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +     
Sbjct: 76   GEIENPTRYL-LKFDQIYLSKPTHWEKDGSPS-PMMPNEARLRNLTYSAPLYVDI----- 128

Query: 135  TQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDC 188
                 T  K   G++       +  +     IG+IP+M++S  C +  +      E  +C
Sbjct: 129  -----TKTKIVEGQDP------VETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNEC 177

Query: 189  DFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVRL 241
              D GGYFII G+EKV +AQE++    ++V +      AYK+E       + R    + +
Sbjct: 178  PLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKTEIRSCLEHSSRPTSTLWV 237

Query: 242  VDMSKF-EDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
              M++  + IK    G++V+++  ++  EIPI I+F ALG  +D++I+  I +  +D  +
Sbjct: 238  NMMARGGQSIKKSAIGQRVIAILPYVKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 297

Query: 297  LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
            + ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C
Sbjct: 298  MEMVKPSLDEAFVVQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFC 357

Query: 343  MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                         +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL    + 
Sbjct: 358  -----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 403  HIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISG 462
               +  K +    Q+ +   +    +E  +   I+T+GL  + +TG W    K  +  +G
Sbjct: 407  LFKNLMKEVRMYAQKFIDRGKDFN-LELAIKTKIITDGLRYSLATGNWGDQKKAHQARAG 465

Query: 463  IVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKN 522
            +   L R     TL  LRR    +   GK+   R  H + WG IC   TP+G   GLVKN
Sbjct: 466  VSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKN 525

Query: 523  LGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVS 581
            L +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    ++
Sbjct: 526  LALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMA 585

Query: 582  ELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVE---------NMGKIKS 631
             LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VE         ++  +K 
Sbjct: 586  TLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVEGGSLLLRKHHIDMLKD 645

Query: 632  LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLL 691
             +  NY +Q L+  G++E + T EEE    A     L +D E      +THCE+  + +L
Sbjct: 646  RDYNNYGWQVLVASGVVEYIDTLEEETVMIAMTPYDLKQDKEYAYCTTYTHCEIHPAMIL 705

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T  
Sbjct: 706  GVCASIIPFPDHNQSPRNTYQSAM-GKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRS 764

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
             +            L   EL  G N+IVA+  + GYNQEDS+++N +++ERG FRS   R
Sbjct: 765  ME-----------YLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYR 813

Query: 812  SYK----AEVDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGD 864
            SYK      + ++E Q +   R++   M N           D LD+DG    G  +   D
Sbjct: 814  SYKDSESKRIGDQEEQFEKPNRQTCQGMRN--------ALYDKLDEDGIIAPGLRVSGDD 865

Query: 865  IVIGKY-----ADSGADHSIK----------LKHTERGMVQKVVLSSNDDGKNFSVVSLR 909
            +VIGK       D   D + K          L+++E G+V +V+L+ N +G  F  + +R
Sbjct: 866  VVIGKTITLPETDDDLDGTTKRFTKRDGSTFLRNSETGIVDQVMLTLNSEGYKFCKIRVR 925

Query: 910  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEA 969
             VR P +GDKF+S HGQKG  G    QE+ PFT +GI PDI+INPHA PSR T G L+E 
Sbjct: 926  SVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIEC 985

Query: 970  ALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVR 1028
              GK       G   G    ATPF    +V  I+  L   G+   G E +Y+G TG  + 
Sbjct: 986  IQGK------LGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKIN 1039

Query: 1029 SLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG 1088
            + +F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC I+HG
Sbjct: 1040 AQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHG 1099

Query: 1089 AAANLHERLFTLSDSYQMHICRKCKNVA 1116
            AA  L ERLF +SD Y++H+C  C  +A
Sbjct: 1100 AAQFLRERLFEVSDPYRIHVCNFCGLIA 1127


>gi|297673507|ref|XP_002814802.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 3
            [Pongo abelii]
 gi|395851371|ref|XP_003798234.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
            [Otolemur garnettii]
 gi|410038419|ref|XP_003950401.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Pan
            troglodytes]
          Length = 1099

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 402/1153 (34%), Positives = 586/1153 (50%), Gaps = 143/1153 (12%)

Query: 86   MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
            ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +          T    K
Sbjct: 11   LKFEQIYLSKPTHWERDGAPS-PMMPNEARLRNLTYSAPLYVDI----------TKTVIK 59

Query: 146  TGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFIIK 199
             G EQ      L  +     IG+IP+M++S  C + G+      E  +C  D GGYFII 
Sbjct: 60   EGEEQ------LQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 113

Query: 200  GAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRN-------------RLIVRLVDMSK 246
            G+EKV +AQE++    ++V        AY  E +                ++ R    +K
Sbjct: 114  GSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAK 173

Query: 247  FEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHD 306
               I G   V ++ ++  E+PI I+F ALG  SD++I+  I +  ED  ++ ++  S+ +
Sbjct: 174  KSAI-GQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDE 232

Query: 307  A-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEECMNTYLFPSLH 352
            A      N    F   R A         +KY  ++++    P    ++ C          
Sbjct: 233  AFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFC---------- 282

Query: 353  GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMA 412
               +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL        A   + M 
Sbjct: 283  -ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLL--------AFLFRGMF 333

Query: 413  KALQRD--LYGDRTVR-----PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVA 465
            K L ++  +Y  + +       +E  +   I+++GL  + +TG W    K  +  +G+  
Sbjct: 334  KNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQ 393

Query: 466  NLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV 525
             L R     TL  LRR    +   GK+   R  H + WG +C   TP+G   GLVKNL +
Sbjct: 394  VLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLAL 453

Query: 526  TGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELR 584
               +S  S   PI E L    ME L + +  ++    K+FV+G W+G+ KD    ++ LR
Sbjct: 454  MAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLR 513

Query: 585  RKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVE---------NMGKIKSLEG 634
            + RR+ ++  ++V + RD  + E+RI+ DAGRI RPLL+VE         ++ ++K  E 
Sbjct: 514  KLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREY 573

Query: 635  KNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPI---KFTHCELDMSFLL 691
             NY++Q L+  G++E + T EEE    A        D+++K+      +THCE+  S +L
Sbjct: 574  NNYSWQDLVASGVVEYIDTLEEETVMLAMTPD----DLQEKEVAYCSTYTHCEIHPSMIL 629

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YPQ+PL  T  
Sbjct: 630  GVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRS 688

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
             +            L   EL  G N+IVA+  + GYNQEDS++MNR++++RG FRS   R
Sbjct: 689  ME-----------YLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYR 737

Query: 812  SYKAEVDNK---EMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIG 868
            SYK +   K   + +V  + + +         +    D LDDDG    G  +   D++IG
Sbjct: 738  SYKEQESKKGFDQEEVFEKPTRETCQ----GMRHAIYDKLDDDGLIAPGVRVSGDDVIIG 793

Query: 869  KYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRS 913
            K                  +  D S  L+ +E G+V +V+++ N +G  F  + +R VR 
Sbjct: 794  KTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRI 853

Query: 914  PCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGK 973
            P +GDKF+S HGQKG  G    QE+ PFT +GI PDI+INPHA PSR T G L+E   GK
Sbjct: 854  PQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGK 913

Query: 974  GIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIF 1032
               +  KG        ATPF    +V  I+  L   G+   G E LY+G TG  + S IF
Sbjct: 914  --VSANKGEIGD----ATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIF 967

Query: 1033 IGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAAN 1092
            IGPT+YQRL HM +DK+  R  GP+  L RQP+  R R GG++FGEMERDC IAHGAA  
Sbjct: 968  IGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQF 1027

Query: 1093 LHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGA 1152
            L ERLF  SD YQ+H+C  C  +A           +     CR C +   I    +PY  
Sbjct: 1028 LRERLFEASDPYQVHVCNLCGIMAI-------ANTRTHTYECRGCRNKTQISLVRMPYAC 1080

Query: 1153 KLLCQELFSMGIT 1165
            KLL QEL SM I 
Sbjct: 1081 KLLFQELMSMSIA 1093


>gi|378729989|gb|EHY56448.1| DNA-directed RNA polymerase II subunit RPB2 [Exophiala dermatitidis
            NIH/UT8656]
          Length = 1263

 Score =  600 bits (1548), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 419/1263 (33%), Positives = 623/1263 (49%), Gaps = 157/1263 (12%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVE--PGYDPSKKGEGEWRY 83
            C K   SFF+   L S QI+S+N F+++GLQ   +  G   ++     D         + 
Sbjct: 39   CWKVISSFFDIKKLASMQIDSFNHFMRSGLQDLVNEKGGVTLDHAQNVDEDDPNPVVIKR 98

Query: 84   ASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDK 143
              ++FG+VTL KP+   G+G    D  P  ARL+++TY+S   VK+  + Y  K    D 
Sbjct: 99   HEVKFGKVTLSKPNMVEGDGVTA-DCMPHEARLRSLTYASPAFVKMTRRTYYAKEKPWDD 157

Query: 144  FKTGREQYIQKEVLS-------------DETTNIIIGRIPVMVKSDLCWMKG-------- 182
               G ++ + +E  S             D    + IG+IP+MV+S  C +          
Sbjct: 158  --AGVDEGVMREDGSQLYWREGTEEGDFDSEKEVYIGKIPIMVRSMTCHLMSDRFQDERD 215

Query: 183  -VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWT-----VAYKSENKRNR 236
                G+C +D GGYFII G+EKV +AQE+     + V               +S   R  
Sbjct: 216  LYAWGECPYDQGGYFIINGSEKVLIAQERSAGNIVQVFQKAAPAPFTHLAEIRSVIDRGA 275

Query: 237  LIVRLVDMSKFEDIKGGEKV-------LSVYFLSTEIPIWILFFALGVSSDKEIVNLIDF 289
             ++    +  F  + G E         + + ++  +IP+ I+F AL + SD +I+  I F
Sbjct: 276  RMMSQCTVKLFRRVDGPEGTKIDNPIRVQLPYVKQDIPLVIVFRALDIVSDADILEKICF 335

Query: 290  TCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTE------ECM 343
               D  ++++L  S+        E +  + A    D + +    P  +S E      + +
Sbjct: 336  DQSDKEMMDMLMGSLQ-------EGQPIQGADLARDFIARRGNVPTLKSHERQKHATDIL 388

Query: 344  NTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERE 399
                 P +      T +KA FLGYMV  LL+   GR + D+RD    KRL+LAG L+   
Sbjct: 389  QKEFLPHIGQGPDATARKAFFLGYMVHRLLKCALGRAEPDDRDHLGKKRLDLAGPLMTNL 448

Query: 400  LKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTER 459
             ++    A K   + +Q+ +   + +  I       I+T+GL  + +TG W    K  + 
Sbjct: 449  FRLQFDKAAKDFYRYMQKRVEAGQPIN-IMAGFKHPIITSGLKYSLATGNWGDQKKLDKA 507

Query: 460  ISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGL 519
             +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGL
Sbjct: 508  KAGVSQVLSRYTFSSTLSHLRRTNAPIGREGKIAKPRQLHNTHWGYVCPAETPEGQACGL 567

Query: 520  VKNLGVTGLVSTSI-LEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVC-KDSL 577
            VKNL +  +V+ S    P+   +    +E L D          KVFVDG W  V  +D  
Sbjct: 568  VKNLSLMSMVTNSYETAPLVNYVLTKNVEALEDWEPRLNPKATKVFVDGVWFAVILRDPK 627

Query: 578  SFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE------------- 624
              V +LR  RRR    +QV +  D  + E +I  D+GRI+RPL VVE             
Sbjct: 628  RLVDDLRMLRRRGVFDSQVSLVWDIREKEFKISGDSGRIVRPLFVVETDRSSENHGNLVL 687

Query: 625  NMGKIKSLEGKNYT----------------FQALLDHGIIELVGTEEEED---CCTAWGI 665
            N   I+ L+   Y                 +  LL  G++E +  EEEE    C T   +
Sbjct: 688  NKEHIRKLDETTYLKENDFQDWNEQVKPFGWTELLASGVVEYLDAEEEETAMICMTPEAL 747

Query: 666  -----KYLLKDIE-DKKPIK------------FTHCELDMSFLLGLSCGIIPFANHDHAR 707
                 K+   +IE D  P+             FTHCE+  S +LG+   IIPF +H+ + 
Sbjct: 748  SDSRAKHFGLEIENDDDPLSRNDPLLNPHAHTFTHCEIHPSMILGVCASIIPFPDHNQSP 807

Query: 708  RVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILP 767
            R  YQS     QA+G   TN   R++T+S+ L+YPQ+PL RTM  D            L 
Sbjct: 808  RNTYQSAM-GKQAMGVFLTNFDQRMETMSNILYYPQKPLARTMAMD-----------YLK 855

Query: 768  RPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSY----KAEVDNKEMQ 823
              EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y    K+   +   Q
Sbjct: 856  FRELPAGQNAIVAIATYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYQDSEKSVGHSVVEQ 915

Query: 824  VKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH------ 877
             ++ +  D +       K G  D +D+DG    G  +   DI++GK A    D       
Sbjct: 916  FEKPTRADTLRL-----KHGTYDKIDEDGIVAPGVRVSGEDIIMGKTAPMAPDAEELGQR 970

Query: 878  ---------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKG 928
                     S  L+ TE G+V +V+L++  +G  F+ V +R  + P +GDKF+S HGQKG
Sbjct: 971  LKQHIKRDVSTPLRSTESGIVDQVMLTTTAEGHRFAKVRVRTTKVPQIGDKFASRHGQKG 1030

Query: 929  VLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKR 988
             +G     E+ PFT +GIVPD++INPHA PSR T   L+E  L K +A L      G + 
Sbjct: 1031 TIGITYRHEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSK-VATL-----RGDEG 1084

Query: 989  YATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDK 1048
             ATPF   +V  I+E L   G+   G E +Y+G TG  + + +F+GPT+YQRL HM +DK
Sbjct: 1085 DATPFTKVTVTQISELLRNMGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDK 1144

Query: 1049 VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHI 1108
            +  R  GP   LTRQPV  R R GG++FGEMERDC+IAHGA++ L ERLF +SD +++H+
Sbjct: 1145 IHSRARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASSFLKERLFDVSDPFRVHV 1204

Query: 1109 CRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
            C  C  +  VI ++     K     C+ C++ + I +  +PY AKLL QEL++M I  + 
Sbjct: 1205 CDIC-GLMTVIAKL-----KKNTFECKNCNNKNKISQIYLPYAAKLLFQELWAMNIAARL 1258

Query: 1169 DTE 1171
             T+
Sbjct: 1259 YTK 1261


>gi|73975081|ref|XP_861044.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 17
            [Canis lupus familiaris]
 gi|410957579|ref|XP_003985403.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
            [Felis catus]
          Length = 1099

 Score =  600 bits (1548), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 402/1153 (34%), Positives = 586/1153 (50%), Gaps = 143/1153 (12%)

Query: 86   MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
            ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +          T    K
Sbjct: 11   LKFEQIYLSKPTHWERDGAPS-PMMPNEARLRNLTYSAPLYVDI----------TKTVIK 59

Query: 146  TGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFIIK 199
             G EQ      L  +     IG+IP+M++S  C + G+      E  +C  D GGYFII 
Sbjct: 60   EGEEQ------LQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 113

Query: 200  GAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRN-------------RLIVRLVDMSK 246
            G+EKV +AQE++    ++V        AY  E +                ++ R    +K
Sbjct: 114  GSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAK 173

Query: 247  FEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHD 306
               I G   V ++ ++  E+PI I+F ALG  SD++I+  I +  ED  ++ ++  S+ +
Sbjct: 174  KSAI-GQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDE 232

Query: 307  A-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEECMNTYLFPSLH 352
            A      N    F   R A         +KY  ++++    P    ++ C          
Sbjct: 233  AFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFC---------- 282

Query: 353  GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMA 412
               +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL        A   + M 
Sbjct: 283  -ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLL--------AFLFRGMF 333

Query: 413  KALQRD--LYGDRTVR-----PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVA 465
            K L ++  +Y  + +       +E  +   I+++GL  + +TG W    K  +  +G+  
Sbjct: 334  KNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQ 393

Query: 466  NLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV 525
             L R     TL  LRR    +   GK+   R  H + WG +C   TP+G   GLVKNL +
Sbjct: 394  VLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLAL 453

Query: 526  TGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELR 584
               +S  S   PI E L    ME L + +  ++    K+FV+G W+G+ KD    ++ LR
Sbjct: 454  MAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLR 513

Query: 585  RKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVE---------NMGKIKSLEG 634
            + RR+ ++  ++V + RD  + E+RI+ DAGRI RPLL+VE         ++ ++K  E 
Sbjct: 514  KLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREY 573

Query: 635  KNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPI---KFTHCELDMSFLL 691
             NY++Q L+  G++E + T EEE    A        D+++K+      +THCE+  S +L
Sbjct: 574  NNYSWQDLVASGVVEYIDTLEEETVMLAMTPD----DLQEKEVAYCSTYTHCEIHPSMIL 629

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YPQ+PL  T  
Sbjct: 630  GVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRS 688

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
             +            L   EL  G N+IVA+  + GYNQEDS++MNR++++RG FRS   R
Sbjct: 689  ME-----------YLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYR 737

Query: 812  SYKAEVDNK---EMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIG 868
            SYK +   K   + +V  + + +         +    D LDDDG    G  +   D++IG
Sbjct: 738  SYKEQESKKGFDQEEVFEKPTRETCQ----GMRHAIYDKLDDDGLIAPGVRVSGDDVIIG 793

Query: 869  KYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRS 913
            K                  +  D S  L+ +E G+V +V+++ N +G  F  + +R VR 
Sbjct: 794  KTVTLPENEDELEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRI 853

Query: 914  PCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGK 973
            P +GDKF+S HGQKG  G    QE+ PFT +GI PDI+INPHA PSR T G L+E   GK
Sbjct: 854  PQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGK 913

Query: 974  GIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIF 1032
               +  KG        ATPF    +V  I+  L   G+   G E LY+G TG  + S IF
Sbjct: 914  --VSANKGEIGD----ATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIF 967

Query: 1033 IGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAAN 1092
            IGPT+YQRL HM +DK+  R  GP+  L RQP+  R R GG++FGEMERDC IAHGAA  
Sbjct: 968  IGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQF 1027

Query: 1093 LHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGA 1152
            L ERLF  SD YQ+H+C  C  +A           +     CR C +   I    +PY  
Sbjct: 1028 LRERLFEASDPYQVHVCNLCGIMAI-------ANTRTHTYECRGCRNKTQISLVRMPYAC 1080

Query: 1153 KLLCQELFSMGIT 1165
            KLL QEL SM I 
Sbjct: 1081 KLLFQELMSMSIA 1093


>gi|403161549|ref|XP_003321874.2| DNA-directed RNA polymerase II subunit RPB2 [Puccinia graminis f. sp.
            tritici CRL 75-36-700-3]
 gi|375171826|gb|EFP77455.2| DNA-directed RNA polymerase II subunit RPB2 [Puccinia graminis f. sp.
            tritici CRL 75-36-700-3]
          Length = 1131

 Score =  600 bits (1548), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 398/1147 (34%), Positives = 594/1147 (51%), Gaps = 129/1147 (11%)

Query: 109  MFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKF--KTGREQYIQKEVLSDE--TTNI 164
            MFP  ARL+N+TYSS + V +        ++ + +F  +TG   YI  +V +DE  +T I
Sbjct: 11   MFPNEARLRNLTYSSPLYVDMS----KSNKLATGEFDEETGEPIYIADDVDNDEKNSTQI 66

Query: 165  IIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV 218
             IG++P+M++S+ C +  +E        +C FD GGYF+I G+EKV +AQE++    ++V
Sbjct: 67   YIGKVPIMLRSEFCILDKLEDPGLYELNECPFDQGGYFVINGSEKVLIAQERMAANHVYV 126

Query: 219  SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKV-LSVYFLSTEIPIWILFFALGV 277
                G     K     + + V++    K E   GG  +  ++ ++  +IPI ++F ALG+
Sbjct: 127  FAKAGPLAVEKGSKTVSSMQVKMYGGHKAEKAGGGATIKTTLPYIRNDIPIVVVFRALGI 186

Query: 278  SSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGE 337
              DK+I+  I +   D ++  +L   + D+       ++   AL ++ +    T     +
Sbjct: 187  IPDKDILEHICYDRNDTAMFEMLKPCLEDSF----PIQEQEVALDFIGRRGTATGLSREK 242

Query: 338  S---TEECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLE 390
                 EE +   + P +  ++    +KA F GYM+  LL A   RR  D+RD F  KRL+
Sbjct: 243  RLKYAEEILQKEMLPHISMSEGQQGKKAYFFGYMIHRLLLAALDRRDLDDRDHFGKKRLD 302

Query: 391  LAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAW 450
            LAG LL    ++      K + + LQ+ +   +    +   + ++ +TNGL  + +TG W
Sbjct: 303  LAGPLLAGLFRMLFRKLTKDVYRHLQKCVEMQKPFN-LNAAVKSNTITNGLKYSLATGNW 361

Query: 451  SHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLS 510
                K  +  +G+   L R     TL  LRR    +   GK+   R  H SHWG +C   
Sbjct: 362  GDQKKAMQARAGVSQVLNRYTFASTLSHLRRCNTPIGRDGKIAKPRQLHNSHWGMVCPAE 421

Query: 511  TPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDW 569
            TP+G+ CGLVKNL +   +S  S   PI E L   GME L D+ S  +    KVFV+G W
Sbjct: 422  TPEGQACGLVKNLALMSYISVGSPSAPIVEFLEEWGMESL-DEFSSDMSNGTKVFVNGVW 480

Query: 570  IGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENM--- 626
             GV +     +  ++R RR  ++  +V + RD  + E+R+F D GR+ RPL +VEN    
Sbjct: 481  QGVHRAPAELLDTIKRLRRCGDIEPEVSVMRDVRERELRVFTDGGRVCRPLFIVENQQLL 540

Query: 627  ----------------------GKIKSLEGKNYTFQALLDHGIIELVGTEEEED---CCT 661
                                  G+  + +G  + +  L+  GI+E +  EEEE    C T
Sbjct: 541  LKKEHIEWLSNGCETAEEDQDAGEEAADDGVPFGWSQLVARGIVEYLDAEEEETVMICMT 600

Query: 662  AWGIKYLLKDIEDKKPIK-------------------FTHCELDMSFLLGLSCGIIPFAN 702
               ++   +  E  +  K                   +THCE+  + +LG+   IIPF +
Sbjct: 601  PEELEQSREYQETGQVPKENYDPAARLKGNTSMYSHTWTHCEIHPAMILGICASIIPFPD 660

Query: 703  HDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGH 762
            H+ + R  YQS     QA+G   TN   R+DT+++ L+YPQ+PL  T   +         
Sbjct: 661  HNQSPRNTYQS-AMGKQAMGVYLTNFRTRMDTMANILYYPQKPLATTRSME--------- 710

Query: 763  NHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEM 822
               L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS + RSY         
Sbjct: 711  --YLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSFYYRSYMD------- 761

Query: 823  QVKRRSSDDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA----- 871
            Q KR  +  M  F K      ++ K G  D LDDDG    G  +   DI+IGK A     
Sbjct: 762  QEKRAGALQMEEFEKPTRDSTLRLKHGTYDKLDDDGIITPGTRVSGDDIIIGKTAPIPKD 821

Query: 872  ----------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFS 921
                       +  D S+ LK TE G++ +V++++N DG  F  V +R  R P  GDKF+
Sbjct: 822  SEELGQRMKTHTKRDVSMPLKSTENGIIDQVLVTTNQDGLKFVKVRIRSTRIPETGDKFA 881

Query: 922  SMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKG 981
            S HGQKG +G L  QE+ PFT +G+ PDI+INPHA PSR T G L+E  L K        
Sbjct: 882  SRHGQKGTVGILYRQEDMPFTSEGVCPDIIINPHAIPSRMTIGHLVECLLSK------VS 935

Query: 982  ICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRL 1041
              +G +  ATPF+  +V+AI+  L   G+   G E +++G TG+ +R+  ++GPT+YQRL
Sbjct: 936  TITGNEGDATPFSEVTVEAISALLKDKGYQSRGLEIMFNGHTGKKLRAQCYLGPTYYQRL 995

Query: 1042 IHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLS 1101
             HM  DK+  R  GPV  LTRQPV  R R GG++FGEMERDC+I+HG A  L ER+F +S
Sbjct: 996  KHMVNDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLKERMFDVS 1055

Query: 1102 DSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFS 1161
            D+Y++H+C  C  VA           K +   CR C +   I +  +PY AKLL QEL S
Sbjct: 1056 DAYRVHVCDFCGMVAI-------ANLKKQSFECRSCRNKTAISQVYIPYAAKLLFQELQS 1108

Query: 1162 MGITLKF 1168
            M I  +F
Sbjct: 1109 MNIASRF 1115


>gi|256073421|ref|XP_002573029.1| DNA-directed rna polymerase II subunit [Schistosoma mansoni]
          Length = 1304

 Score =  599 bits (1545), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 409/1216 (33%), Positives = 621/1216 (51%), Gaps = 130/1216 (10%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSK 75
            ++  +  +  C     S+F+E GLV  Q++S++EFI+  +QK  +     I+E   +   
Sbjct: 142  EITPDMWQEACWIVISSYFDEKGLVRQQLDSFDEFIQTSIQKIVED--SPIIELQAEAQH 199

Query: 76   KG---EGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQ 132
             G   E   +Y  ++F Q+ L K + +  +G     M P  ARL+N+TY++ + V V   
Sbjct: 200  SGGILETPVQY-RLKFEQIYLSKATHWEKDGSSV-PMTPNDARLRNLTYAAPLYVDVM-- 255

Query: 133  VYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKG 186
                K++  D+ +   E+ ++K+          IG+IP+M++S  C +  +      E  
Sbjct: 256  ----KKIIRDEIE--EEKPLEKK---------FIGKIPIMLRSTYCLLSVMSDRDLAELN 300

Query: 187  DCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR---------NRL 237
            +C  D GGYFII G+EKV +AQE++    ++V        AYK+E +          + L
Sbjct: 301  ECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFKQKDSKYAYKTEIRSCLEHSSRPASTL 360

Query: 238  IVRLV-----DMSKFEDIKGGEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTC 291
             + ++     D SK   I  G++++++  ++  EIP+ I+F ALG  +D++I+  I +  
Sbjct: 361  WINMMARGGKDGSKRATI--GQRIVAILPYIKQEIPVLIVFRALGFVADRDILEHIIYDF 418

Query: 292  EDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGE 337
            +D  +  ++  S+ DA           F   R A         +KY  ++++  T P   
Sbjct: 419  DDTEMREMIKPSLDDAFVIQEQKVALNFIGSRGARPGVTKEKRIKYAKEILQKETLPHVG 478

Query: 338  STEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLE 397
             ++ C             +KA FLGYMV  LL A   RR  D+RD + NKRL+LAG LL 
Sbjct: 479  VSDFC-----------ETRKAYFLGYMVHRLLLAALKRRDVDDRDHYGNKRLDLAGPLLA 527

Query: 398  RELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRT 457
               +    +  K +    Q+ +   +    +E  + + I+T+GL  + +TG W    K  
Sbjct: 528  FLFRGLFRNLTKEIRLYAQKFIDKGKDFN-LELAIRSQIITDGLKYSLATGNWGDQKKAN 586

Query: 458  ERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENC 517
            +   G+   L R     TL  LRR    +   GK+   R  H + WG IC   TP+G   
Sbjct: 587  QARPGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLARPRQLHNTLWGMICPAETPEGHAV 646

Query: 518  GLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDS 576
            GLVKNL +   +S  S   PI E L    ME L + A  ++G   K+FV+G W+G+    
Sbjct: 647  GLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVGIHSSP 706

Query: 577  LSFVSELRRKRRRKE-LPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE---------NM 626
               +  LR+ RR+ + + ++V + RD    E+RI+ DAGRI RPL++VE         ++
Sbjct: 707  DHLMGTLRKLRRQVDVIVSEVSMIRDYRDQEIRIYTDAGRICRPLVIVEKGKLLLKRSHI 766

Query: 627  GKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELD 686
              +K      Y++Q L+  G++E + T EEE    A G   +   +   K    THCE+ 
Sbjct: 767  ELLKDKAYNRYSWQDLVLSGVVEYIDTLEEETVMIAMGPAEMQAAVNYCK--THTHCEIH 824

Query: 687  MSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPL 746
             S +LG+   IIPF +H+ + R  YQS     QA+G   +N   R+DTL++ L+YPQ+PL
Sbjct: 825  PSMILGICASIIPFPDHNQSPRNTYQS-AMGKQAMGVYISNFHTRMDTLANVLYYPQKPL 883

Query: 747  FRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFR 806
              T   + L              EL  G NAIVA+  + GYNQEDS+++N ++++RG FR
Sbjct: 884  VATRSMEYLR-----------FRELPAGINAIVAIATYTGYNQEDSVIINESAIQRGFFR 932

Query: 807  SEHIRSYKAEVDNKEMQVKRR-SSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDI 865
            SE  R+YK +     M ++      +  N   ++  I   D LDDDG    G  +   D+
Sbjct: 933  SEFYRTYKDQETRHGMDLEEVFEKPNPQNCQGMRHAI--YDKLDDDGLIAPGTRVSGDDV 990

Query: 866  VIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQ 910
            +IGK                  +  D S+ ++ +E G+V +V+++ N++G  F  V +R 
Sbjct: 991  LIGKTITLPENEDEMEGGQRRYTKRDASVFMRRSEYGIVDQVMVTWNNEGNKFCKVRVRT 1050

Query: 911  VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA 970
             ++P +GDKF+S HGQKG  G    QE+ PFT +GI PDI+INPHA PSR T G L+E  
Sbjct: 1051 TKAPQVGDKFASRHGQKGTCGIRYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECL 1110

Query: 971  LGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRS 1029
             GK   +  KG        ATPF    +V  I+  L   G+   G E +Y+G TG  + S
Sbjct: 1111 QGK--VSANKGEIGD----ATPFNDAVNVRKISLLLQEYGYQHTGNEIMYNGFTGRKLNS 1164

Query: 1030 LIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA 1089
             IF+GPT+YQRL HM +DK+  R+ GPV  L RQP+  R R GG++FGEMERDC IAHGA
Sbjct: 1165 QIFLGPTYYQRLKHMVDDKIHSRSRGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGA 1224

Query: 1090 AANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVP 1149
            A  L ERLF  SD YQ+++C  C  +A   QR        +   CR C +   I    +P
Sbjct: 1225 AQFLRERLFFASDPYQVYVCNLCGLIAIAHQR-------NKTYECRSCKNTTQISLVKLP 1277

Query: 1150 YGAKLLCQELFSMGIT 1165
            Y  KLL QEL SM I 
Sbjct: 1278 YACKLLFQELMSMSIA 1293


>gi|360044299|emb|CCD81846.1| putative dna-directed rna polymerase II subunit [Schistosoma mansoni]
          Length = 1158

 Score =  599 bits (1545), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 413/1207 (34%), Positives = 620/1207 (51%), Gaps = 132/1207 (10%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKG---EGEWR 82
            C     S+F+E GLV  Q++S++EFI+  +QK  +     I+E   +    G   E   +
Sbjct: 6    CWIVISSYFDEKGLVRQQLDSFDEFIQTSIQKIVED--SPIIELQAEAQHSGGILETPVQ 63

Query: 83   YASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSD 142
            Y  ++F Q+ L K + +  +G     M P  ARL+N+TY++ + V V       K++  D
Sbjct: 64   Y-RLKFEQIYLSKATHWEKDGSSV-PMTPNDARLRNLTYAAPLYVDVM------KKIIRD 115

Query: 143  KFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYF 196
            + +   E+ ++K+          IG+IP+M++S  C +  +      E  +C  D GGYF
Sbjct: 116  EIE--EEKPLEKK---------FIGKIPIMLRSTYCLLSVMSDRDLAELNECPLDPGGYF 164

Query: 197  IIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR---------NRLIVRLV----- 242
            II G+EKV +AQE++    ++V        AYK+E +          + L + ++     
Sbjct: 165  IINGSEKVLIAQEKMATNTVYVFKQKDSKYAYKTEIRSCLEHSSRPASTLWINMMARGGK 224

Query: 243  DMSKFEDIKGGEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILF 301
            D SK   I  G++++++  ++  EIP+ I+F ALG  +D++I+  I +  +D  +  ++ 
Sbjct: 225  DGSKRATI--GQRIVAILPYIKQEIPVLIVFRALGFVADRDILEHIIYDFDDTEMREMIK 282

Query: 302  ASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEECMNTYL 347
             S+ DA           F   R A         +KY  ++++  T P    ++ C     
Sbjct: 283  PSLDDAFVIQEQKVALNFIGSRGARPGVTKEKRIKYAKEILQKETLPHVGVSDFC----- 337

Query: 348  FPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHA 407
                    +KA FLGYMV  LL A   RR  D+RD + NKRL+LAG LL    +    + 
Sbjct: 338  ------ETRKAYFLGYMVHRLLLAALKRRDVDDRDHYGNKRLDLAGPLLAFLFRGLFRNL 391

Query: 408  RKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANL 467
             K +    Q+ +   +    +E  + + I+T+GL  + +TG W    K  +   G+   L
Sbjct: 392  TKEIRLYAQKFIDKGKDFN-LELAIRSQIITDGLKYSLATGNWGDQKKANQARPGVSQVL 450

Query: 468  GRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTG 527
             R     TL  LRR    +   GK+   R  H + WG IC   TP+G   GLVKNL +  
Sbjct: 451  NRLTFASTLSHLRRLNSPIGRDGKLARPRQLHNTLWGMICPAETPEGHAVGLVKNLALMA 510

Query: 528  LVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRK 586
             +S  S   PI E L    ME L + A  ++G   K+FV+G W+G+       +  LR+ 
Sbjct: 511  YISVGSQPSPILEFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVGIHSSPDHLMGTLRKL 570

Query: 587  RRRKE-LPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGK--- 635
            RR+ + + ++V + RD    E+RI+ DAGRI RPL++VE  GK       I+ L+ K   
Sbjct: 571  RRQVDVIVSEVSMIRDYRDQEIRIYTDAGRICRPLVIVEK-GKLLLKRSHIELLKDKAYN 629

Query: 636  NYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSC 695
             Y++Q L+  G++E + T EEE    A G   +   +   K    THCE+  S +LG+  
Sbjct: 630  RYSWQDLVLSGVVEYIDTLEEETVMIAMGPAEMQAAVNYCK--THTHCEIHPSMILGICA 687

Query: 696  GIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCL 755
             IIPF +H+ + R  YQS     QA+G   +N   R+DTL++ L+YPQ+PL  T   +  
Sbjct: 688  SIIPFPDHNQSPRNTYQS-AMGKQAMGVYISNFHTRMDTLANVLYYPQKPLVATRSME-- 744

Query: 756  GKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKA 815
                      L   EL  G NAIVA+  + GYNQEDS+++N ++++RG FRSE  R+YK 
Sbjct: 745  ---------YLRFRELPAGINAIVAIATYTGYNQEDSVIINESAIQRGFFRSEFYRTYKD 795

Query: 816  EVDNKEMQVKRR-SSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD-- 872
            +     M ++      +  N   ++  I   D LDDDG    G  +   D++IGK     
Sbjct: 796  QETRHGMDLEEVFEKPNPQNCQGMRHAI--YDKLDDDGLIAPGTRVSGDDVLIGKTITLP 853

Query: 873  -------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDK 919
                         +  D S+ ++ +E G+V +V+++ N++G  F  V +R  ++P +GDK
Sbjct: 854  ENEDEMEGGQRRYTKRDASVFMRRSEYGIVDQVMVTWNNEGNKFCKVRVRTTKAPQVGDK 913

Query: 920  FSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALG 979
            F+S HGQKG  G    QE+ PFT +GI PDI+INPHA PSR T G L+E   GK   +  
Sbjct: 914  FASRHGQKGTCGIRYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGK--VSAN 971

Query: 980  KGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFY 1038
            KG        ATPF    +V  I+  L   G+   G E +Y+G TG  + S IF+GPT+Y
Sbjct: 972  KGEIGD----ATPFNDAVNVRKISLLLQEYGYQHTGNEIMYNGFTGRKLNSQIFLGPTYY 1027

Query: 1039 QRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLF 1098
            QRL HM +DK+  R+ GPV  L RQP+  R R GG++FGEMERDC IAHGAA  L ERLF
Sbjct: 1028 QRLKHMVDDKIHSRSRGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLF 1087

Query: 1099 TLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQE 1158
              SD YQ+++C  C  +A   QR        +   CR C +   I    +PY  KLL QE
Sbjct: 1088 FASDPYQVYVCNLCGLIAIAHQR-------NKTYECRSCKNTTQISLVKLPYACKLLFQE 1140

Query: 1159 LFSMGIT 1165
            L SM I 
Sbjct: 1141 LMSMSIA 1147


>gi|336265263|ref|XP_003347404.1| hypothetical protein SMAC_08679 [Sordaria macrospora k-hell]
 gi|380087481|emb|CCC14221.1| unnamed protein product [Sordaria macrospora k-hell]
          Length = 1274

 Score =  599 bits (1544), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 434/1270 (34%), Positives = 642/1270 (50%), Gaps = 188/1270 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVE---PGYDPSKKGEGEWRYASMRF 88
            S+F+  GLVS QI+S+NEF  + +Q   D + +  ++   PG D  +  +   R   + F
Sbjct: 54   SYFDLKGLVSQQIDSFNEFTTDTVQSLIDEYADLTLDHPSPGDDDGR--DIILRRYDVHF 111

Query: 89   GQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKV----QFQVYTQK---RVTS 141
            G++ + +P+     G +   + P   R +N+TYS+ +  KV    +  V  +K   ++T 
Sbjct: 112  GEIIISRPTLTEATG-ETISLLPYECRDRNLTYSAPIYCKVTKRARIAVSEKKPLNQLTD 170

Query: 142  DKF----KTGREQYIQKEVLSDETTN----------------IIIGRIPVMVKSDLC--W 179
            D+     +TG    + + +  +                    + +G+IP+MVKS +C  +
Sbjct: 171  DEHDHMARTGEHPTVLRWIEEESAPPEPPKEDKVNAENLKGYLFLGKIPIMVKSKICHLY 230

Query: 180  MKGVEK----GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE--- 231
            M+  E      +C +D GGYFII G+EKV +AQE+     + V     G +V+Y++E   
Sbjct: 231  MEDDESLFTLNECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKPPGGSVSYQAEIRS 290

Query: 232  --NKRNRLI--VRLVDMSKFEDIKG---GEKVLSVYFLSTEIPIWILFFALGVSSDKEIV 284
               K +RLI  +++   +K +  KG       +++ ++  E+ + I+F ALGV SD++I+
Sbjct: 291  ALEKGSRLISSLQMRLHTKADQNKGRLANTVSVTLPYVKEEVSLAIVFRALGVVSDEDIL 350

Query: 285  NLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKG----TTFPPGESTE 340
            N I +   D  +L  L   I +A   C + R+   AL Y+ K   G          ++ +
Sbjct: 351  NHICYDRRDSQMLEALRPCIEEA--FCIQDRE--VALDYIGKRGNGGAGVNRNARIKAAK 406

Query: 341  ECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL 396
            + +   L P +   +    +KA FLGYMV  LLQ   GRR  D+RD F  KRL+LAG LL
Sbjct: 407  DMLQKELLPHISQAEGCETRKAFFLGYMVHKLLQCVLGRRDTDDRDHFGKKRLDLAGPLL 466

Query: 397  ERELKVHIAHARKRMAKALQRDLYG--DRTVRPIEYY-----LDASILTNGLSRAFSTGA 449
                    A   + + + L +DL G   R V   +++     + AS LTNGL  + +TG 
Sbjct: 467  --------AKLFRGIVRRLTQDLMGYMKRCVDTNKHFSLALGIKASTLTNGLKYSLATGN 518

Query: 450  WSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFL 509
            W    K     +G+   L R     TL  LRRT   +   GK+  A+ P           
Sbjct: 519  WGDQKKAMSSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKL--AKPPE---------- 566

Query: 510  STPDGENCGLVKNLGVTGLVSTSIL-EPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGD 568
             TP+G+ CGLVKNL +   VS   L +PI E +    ME L +          KVFV+G 
Sbjct: 567  -TPEGQACGLVKNLSLMCFVSVGTLADPIIEFMVARNMEVLEEYEPLRYPNATKVFVNGT 625

Query: 569  WIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK 628
            W+GV +D    V+ ++  RR+  +  +V + RD    E +IF DAGR++RPL  VE    
Sbjct: 626  WVGVHQDPKHLVTLVQNLRRKNIISFEVSLVRDIRDREFKIFSDAGRVMRPLFTVEQEDN 685

Query: 629  ----------------IKSLE-----GKN----YTFQALLDHGIIELVGTEEEED---CC 660
                            I+ LE     GK     + +Q LL+ G IE +  EEEE    C 
Sbjct: 686  GESGVEKGQLILTKEHIRRLEQDKELGKYHEDYFGWQGLLESGAIEYLDAEEEETAMICM 745

Query: 661  TAWGI------KYLLKDIEDKKPIK---------------FTHCELDMSFLLGLSCGIIP 699
            T   +      K+  ++ ED    +               +THCE+  S LLG+   IIP
Sbjct: 746  TPEDLDTYRQHKFKGREFEDDAANRGNSRIKTKFNPTTHMYTHCEIHPSMLLGICASIIP 805

Query: 700  FANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPG 759
            F +H+ + R  YQS     QA+GF  TN S R+DT+++ L+YPQ+PL  T   +      
Sbjct: 806  FPDHNQSPRNTYQSAM-GKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSME------ 858

Query: 760  YGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYK-AEVD 818
                  L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   RSY   E  
Sbjct: 859  -----YLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGIFRSLFFRSYTDCEKR 913

Query: 819  NKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH- 877
                 V++    D  N   ++ K G  D L++DG    G  +   DI+IGK +    D+ 
Sbjct: 914  VGINIVEQFEKPDRSN--TLRPKHGTYDKLENDGIIAPGIRVTGDDIIIGKTSPINPDNQ 971

Query: 878  --------------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSM 923
                          S  L+ TE G+V  V  ++N DG  +  V +R  + P +GDKF+S 
Sbjct: 972  ELGQRTAQHVKRDASTPLRSTESGIVDSVAFTTNQDGLRYVKVRVRTTKIPQIGDKFASR 1031

Query: 924  HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGIC 983
            HGQKG +G    QE+ PFT +GI PDI+INPHA PSR T   L+E  L K       G  
Sbjct: 1032 HGQKGTIGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLLSK------VGSL 1085

Query: 984  SGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIH 1043
             G++  ATPF   +VD+++  L   G+   G E +Y G TG  +R+ +F GPT+YQRL H
Sbjct: 1086 KGMEGDATPFTDVTVDSVSNLLREHGYQSRGFEIMYHGHTGRKLRAQVFFGPTYYQRLRH 1145

Query: 1044 MSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDS 1103
            M +DK+  R  GPV  +TRQPV  R R GG++FGEMERDC+IAHGAA+ L ERLF +SD+
Sbjct: 1146 MVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDA 1205

Query: 1104 YQMHICRKC---KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELF 1160
            +++HIC  C     +AN+ ++            CR C +   I + ++PY AKLL QEL 
Sbjct: 1206 FRVHICEICGLMTPIANLTKQSFE---------CRPCKNKTKIAQVHMPYAAKLLFQELM 1256

Query: 1161 SMGITLKFDT 1170
            SM I  +  T
Sbjct: 1257 SMNIASRMFT 1266


>gi|345495600|ref|XP_003427537.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB2 [Nasonia vitripennis]
          Length = 1174

 Score =  599 bits (1544), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 407/1214 (33%), Positives = 622/1214 (51%), Gaps = 138/1214 (11%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYAS 85
            C     ++F+E GLV  Q++S++EFI+  +Q+  +   +  ++     ++   GE    +
Sbjct: 25   CWIVINAYFDEKGLVRQQLDSFDEFIEMSVQRIVEDSPQIELQA---EAQHTTGEIENPT 81

Query: 86   ---MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSD 142
               ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +       K +  D
Sbjct: 82   KHLVKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLTYSAPLYVDIT------KTIEKD 134

Query: 143  KFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYF 196
                       +E +  +     IG+IP+M++S  C + G+      E  +C  D GGYF
Sbjct: 135  G----------EEPIETQHQKTFIGKIPIMLRSKYCLLAGLSDRDLTELNECPLDPGGYF 184

Query: 197  IIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVRLVDMSKF-E 248
            II G+EKV +AQE++    ++V +      A+K E       + R    + +  M+K   
Sbjct: 185  IINGSEKVLIAQEKMATNTVYVFSMKDGKYAFKCEIRSCLEHSSRPTSTLWINMMAKSGA 244

Query: 249  DIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASI 304
            +IK    G+++++V  ++  EIPI I+F ALG  +D++I+  I +  +D  ++ ++  S+
Sbjct: 245  NIKKSAIGQRIVAVLPYIRQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSL 304

Query: 305  HDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEECMNTYLFPS 350
             +A      N    F   R A         +KY  ++++  T P    ++ C        
Sbjct: 305  DEAFVIQEQNVALNFIGTRGARPGVTKDKRIKYAKEILQKETLPHVGISDFC-------- 356

Query: 351  LHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKR 410
                 +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL    +    +  K 
Sbjct: 357  ---ETKKAYFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKE 413

Query: 411  MAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRA 470
            +    Q+ +   +    +E  +   I+T+GL  + +TG W    K     +G+   L R 
Sbjct: 414  VRMYAQKFIDRGKDFN-LELAIKTKIITDGLRYSLATGNWGDQKKAHLARAGVSQVLNRL 472

Query: 471  NPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVS 530
                TL  LRR    +   GK+   R  H + WG +C   TP+G   GLVKNL +   +S
Sbjct: 473  TFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS 532

Query: 531  T-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRR 589
              S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    ++ LR+ RR+
Sbjct: 533  VGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPDQLMATLRKLRRQ 592

Query: 590  KEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMG------KIKSLEGKNYT---F 639
             ++  ++V + RD    E+RI+ DAGRI RPLL+VEN         I  L+ ++Y    +
Sbjct: 593  MDIIVSEVSMIRDIRDREIRIYTDAGRISRPLLIVENQTLLLKKRHIDMLKDRDYNNDGW 652

Query: 640  QALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIP 699
            Q L+  G++E + T EEE    A     L ++ E      +THCE+  + +LG+   IIP
Sbjct: 653  QELVASGVVEYIDTLEEETVMIAMSPDDLKQEKEYAYCSTYTHCEIHPAMILGVCASIIP 712

Query: 700  FANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPG 759
            F +H+ + R  YQ      + +G   TN  +R+DTL+H L+YP +PL  T   +      
Sbjct: 713  FPDHNQSPRNTYQVNMFP-KVMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSME------ 765

Query: 760  YGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYK----A 815
                  L   EL  G N+IVA+  + GYNQEDS+++N +++ERG FRS   RSYK     
Sbjct: 766  -----YLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSETK 820

Query: 816  EVDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA- 871
            +  ++E Q +   R++   M N           D LDDDG    G  +   D+VIGK   
Sbjct: 821  KFGDQEEQFEKPSRQTCQGMRN--------ALYDKLDDDGIIAPGIRVSGDDVVIGKTMT 872

Query: 872  --------DSGA------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLG 917
                    DS        D S  L+++E G+V +V+L+ N +G  F  + +R VR P +G
Sbjct: 873  LPENDDELDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIG 932

Query: 918  DKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAA 977
            DKF+S HGQKG  G    QE+ PF+ +G+ PDI+INPHA PSR T G L+E   GK   +
Sbjct: 933  DKFASRHGQKGTCGIQYRQEDMPFSCEGLTPDIIINPHAIPSRMTIGHLIECIQGK--VS 990

Query: 978  LGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPT 1036
              KG        ATPF    +V  I+  L   G+   G E +Y+G TG  + + +F+GPT
Sbjct: 991  ANKGEIGD----ATPFNDAVNVQKISTLLCEYGYQLRGNEIMYNGHTGRKINAQVFLGPT 1046

Query: 1037 FYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHER 1096
            +YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC I+HGAA  L ER
Sbjct: 1047 YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 1106

Query: 1097 LFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKL 1154
            LF +SD Y++H+C  C    +AN+               C+ C +   I +  +PY AKL
Sbjct: 1107 LFEVSDPYRIHVCNFCGLIAIANLRNNTFE---------CKGCKNKTQISQVRLPYAAKL 1157

Query: 1155 LCQELFSMGITLKF 1168
            L QEL +M I  + 
Sbjct: 1158 LFQELMAMNIAPRL 1171


>gi|226480014|emb|CAX73303.1| putative DNA-directed RNA polymerase II 140 kDa polypeptide (RNA
            polymerase II subunit 2) (RPB2) [Schistosoma japonicum]
          Length = 1196

 Score =  598 bits (1543), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 413/1207 (34%), Positives = 620/1207 (51%), Gaps = 132/1207 (10%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKG---EGEWR 82
            C     S+F+E GLV  Q++S++EFI+  +QK  +     I+E   +    G   E   +
Sbjct: 44   CWIVISSYFDEKGLVRQQLDSFDEFIQTSIQKIVED--SPIIELQAEAQHSGGILENPVQ 101

Query: 83   YASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSD 142
            Y  ++F Q+ L K + +  +G     M P  ARL+N+TY++ + V V       K++  D
Sbjct: 102  Y-RLKFEQIYLSKATHWEKDGSSV-PMTPNDARLRNLTYAAPLYVDVM------KKIIRD 153

Query: 143  KFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYF 196
            +  T  E+ ++K+          IG+IP+M++S  C +  +      E  +C  D GGYF
Sbjct: 154  E--TEEEKPLEKK---------FIGKIPIMLRSTYCLLSVMSDRDLAELNECPLDPGGYF 202

Query: 197  IIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR---------NRLIVRLV----- 242
            II G+EKV +AQE++    ++V        AYK+E +          + L + ++     
Sbjct: 203  IINGSEKVLIAQEKMATNTVYVFKQKDSKYAYKTEIRSCLEHSSRPASTLWINMMARGGK 262

Query: 243  DMSKFEDIKGGEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILF 301
            D SK   I  G++++++  ++  EIP+ I+F ALG  +D++I+  I +  +D  +  ++ 
Sbjct: 263  DGSKRATI--GQRIVAILPYIKQEIPVLIVFRALGFVADRDILEHIIYDFDDTEMREMIK 320

Query: 302  ASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEECMNTYL 347
             S+ DA           F   R A         +KY  ++++  T P    ++ C     
Sbjct: 321  PSLDDAFVIQEQKVALNFIGSRGARPGVTKEKRIKYAKEILQKETLPHVGVSDFC----- 375

Query: 348  FPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHA 407
                    +KA FLGYMV  LL A   RR  D+RD + NKRL+LAG LL    +    + 
Sbjct: 376  ------ETRKAYFLGYMVHRLLLAALKRRDVDDRDHYGNKRLDLAGPLLAFLFRGLFRNL 429

Query: 408  RKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANL 467
             K +    Q+ +   +    +E  + + I+T+GL  + +TG W    K  +   G+   L
Sbjct: 430  TKEIRLYAQKFIDKGKDFN-LELAIRSQIITDGLKYSLATGNWGDQKKANQARPGVSQVL 488

Query: 468  GRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTG 527
             R     TL  LRR    +   GK+   R  H + WG IC   TP+G   GLVKNL +  
Sbjct: 489  NRLTFASTLSHLRRLNSPIGRDGKLARPRQLHNTLWGMICPAETPEGHAVGLVKNLALMA 548

Query: 528  LVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRK 586
             +S  S   PI E L    ME L + A  ++G   K+FV+G W+G+       +  LR+ 
Sbjct: 549  YISVGSQPSPILEFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVGIHSSPDHLMGTLRKL 608

Query: 587  RRRKE-LPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGK--- 635
            RR+ + + ++V + RD    E+RI+ DAGRI RPL++VE  GK       I+ L+ K   
Sbjct: 609  RRQVDVIVSEVSMIRDYRDQEIRIYTDAGRICRPLVIVEK-GKLLLKRSHIELLKDKAYN 667

Query: 636  NYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSC 695
             Y++Q L+  G++E + T EEE    A G   +   +   K    THCE+  S +LG+  
Sbjct: 668  RYSWQDLVLSGVVEYIDTLEEETVMIAMGPAEMQAAVNYCK--THTHCEIHPSMILGICA 725

Query: 696  GIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCL 755
             IIPF +H+ + R  YQS     QA+G   +N   R+DTL++ L+YPQ+PL  T   +  
Sbjct: 726  SIIPFPDHNQSPRNTYQS-AMGKQAMGVYISNFHTRMDTLANVLYYPQKPLVATRSME-- 782

Query: 756  GKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKA 815
                      L   EL  G NAIVA+  + GYNQEDS+++N ++++RG FRSE  R+YK 
Sbjct: 783  ---------YLRFRELPAGINAIVAIATYTGYNQEDSVIINESAIQRGFFRSEFYRTYKD 833

Query: 816  EVDNKEMQVKRR-SSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD-- 872
            +     M ++      +  N   ++  I   D LDDDG    G  +   D++IGK     
Sbjct: 834  QETRHGMDLEEVFEKPNPQNCQGMRHAI--YDKLDDDGLIAPGTRVSGDDVLIGKTITLP 891

Query: 873  -------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDK 919
                         +  D S+ ++ +E G+V +V+++ N++G  F  V +R  ++P +GDK
Sbjct: 892  ENEDEMEGGQRRYTKRDASVFMRRSEYGIVDQVMVTWNNEGNKFCKVRVRTTKAPQVGDK 951

Query: 920  FSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALG 979
            F+S HGQKG  G    QE+ PFT +GI PDI+INPHA PSR T G L+E   GK   +  
Sbjct: 952  FASRHGQKGTCGIRYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGK--VSAN 1009

Query: 980  KGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFY 1038
            KG        ATPF    +V  I+  L   G+   G E +Y+G TG  + S IF+GPT+Y
Sbjct: 1010 KGEIGD----ATPFNDAVNVRKISLLLQEYGYQHTGNEIMYNGFTGRKLNSQIFLGPTYY 1065

Query: 1039 QRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLF 1098
            QRL HM +DK+  ++ GPV  L RQP+  R R GG++FGEMERDC IAHGAA  L ERLF
Sbjct: 1066 QRLKHMVDDKIHSQSRGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLF 1125

Query: 1099 TLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQE 1158
              SD YQ+++C  C  +A   QR        +   CR C +   I    +PY  KLL QE
Sbjct: 1126 FASDPYQVYVCNLCGLIAIAHQR-------NKTYECRSCKNTTQISLVKLPYACKLLFQE 1178

Query: 1159 LFSMGIT 1165
            L SM I 
Sbjct: 1179 LMSMSIA 1185


>gi|194378878|dbj|BAG57990.1| unnamed protein product [Homo sapiens]
          Length = 1099

 Score =  598 bits (1543), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 401/1153 (34%), Positives = 585/1153 (50%), Gaps = 143/1153 (12%)

Query: 86   MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
            ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +          T    K
Sbjct: 11   LKFEQIYLSKPTHWERDGAPS-PMMPNEARLRNLTYSAPLYVDI----------TKTVIK 59

Query: 146  TGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFIIK 199
             G EQ      L  +     IG+IP+M++S  C + G+      E  +C  D GGYFII 
Sbjct: 60   EGEEQ------LQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 113

Query: 200  GAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRN-------------RLIVRLVDMSK 246
            G+EKV +AQE++    ++V        AY  E +                ++ R    +K
Sbjct: 114  GSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAK 173

Query: 247  FEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHD 306
               I G   V ++ ++  E+PI I+F ALG  SD++I+  I +  ED  ++ ++  S+ +
Sbjct: 174  KSAI-GQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDE 232

Query: 307  A-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEECMNTYLFPSLH 352
            A      N    F   R A         +KY  ++++    P    ++ C          
Sbjct: 233  AFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFC---------- 282

Query: 353  GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMA 412
               +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL        A   + M 
Sbjct: 283  -ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLL--------AFLFRGMF 333

Query: 413  KALQRD--LYGDRTVR-----PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVA 465
            K L ++  +Y  + +       +E  +   I+++GL  + +TG W    K  +  +G+  
Sbjct: 334  KNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQ 393

Query: 466  NLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV 525
             L R     TL  LRR    +   GK+   R  H + WG +C   TP+G   GLVKNL +
Sbjct: 394  VLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLAL 453

Query: 526  TGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELR 584
               +S  S   PI E L    ME L + +  ++    K+FV+G W+G+ KD    ++ LR
Sbjct: 454  MAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLR 513

Query: 585  RKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVE---------NMGKIKSLEG 634
            + RR+ ++  ++V + RD  + E+RI+ DAGRI RPLL+VE         ++ ++K  E 
Sbjct: 514  KLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREY 573

Query: 635  KNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPI---KFTHCELDMSFLL 691
             NY++Q L+  G++E + T EEE    A        D+++K+      +THCE+  S +L
Sbjct: 574  NNYSWQDLVASGVVEYIDTLEEETVMLAMTPD----DLQEKEVAYCSTYTHCEIHPSMIL 629

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YPQ+PL  T  
Sbjct: 630  GVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRS 688

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
             +            L   EL  G N+IVA+  + GYNQEDS++MNR++++R  FRS   R
Sbjct: 689  ME-----------YLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRSFFRSVFYR 737

Query: 812  SYKAEVDNK---EMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIG 868
            SYK +   K   + +V  + + +         +    D LDDDG    G  +   D++IG
Sbjct: 738  SYKEQESKKGFDQEEVFEKPTRETCQ----GMRHAIYDKLDDDGLIAPGVRVSGDDVIIG 793

Query: 869  KYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRS 913
            K                  +  D S  L+ +E G+V +V+++ N +G  F  + +R VR 
Sbjct: 794  KTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRI 853

Query: 914  PCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGK 973
            P +GDKF+S HGQKG  G    QE+ PFT +GI PDI+INPHA PSR T G L+E   GK
Sbjct: 854  PQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGK 913

Query: 974  GIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIF 1032
               +  KG        ATPF    +V  I+  L   G+   G E LY+G TG  + S IF
Sbjct: 914  --VSANKGEIGD----ATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIF 967

Query: 1033 IGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAAN 1092
            IGPT+YQRL HM +DK+  R  GP+  L RQP+  R R GG++FGEMERDC IAHGAA  
Sbjct: 968  IGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQF 1027

Query: 1093 LHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGA 1152
            L ERLF  SD YQ+H+C  C  +A           +     CR C +   I    +PY  
Sbjct: 1028 LRERLFEASDPYQVHVCNLCGIMAI-------ANTRTHTYECRGCRNKTQISLVRMPYAC 1080

Query: 1153 KLLCQELFSMGIT 1165
            KLL QEL SM I 
Sbjct: 1081 KLLFQELMSMSIA 1093


>gi|169806505|ref|XP_001827997.1| DNA-directed RNA polymerase [Enterocytozoon bieneusi H348]
 gi|161779137|gb|EDQ31162.1| DNA-directed RNA polymerase [Enterocytozoon bieneusi H348]
          Length = 1138

 Score =  598 bits (1543), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 412/1185 (34%), Positives = 617/1185 (52%), Gaps = 119/1185 (10%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            SFF++ GLV  Q++S+N+F+K  +Q+  D    +I+     P+  G    R   + FGQ+
Sbjct: 27   SFFDQKGLVRQQLDSFNQFVKIKMQEIIDE--NSIISVKSIPTA-GNSIEREIKLYFGQI 83

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
            ++  P       G    + P  ARL+++TY   M + V+ + Y +  +  D  KT R  +
Sbjct: 84   SILGPPINTEIDGTSSKILPNEARLRDLTYWVNMFIDVK-KAYYENGIEVDVSKTIRVPF 142

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMK------GVEKGDCDFDHGGYFIIKGAEKVF 205
                           G +PVMVKS+LC +K       +  G+C +D GGYFII G EKV 
Sbjct: 143  ---------------GSLPVMVKSELCALKELNDKDNIRLGECPYDQGGYFIITGGEKVI 187

Query: 206  VAQEQICLKRLWV-SNSMGWTVAYKSENKRNRLI-VRLVDMSKFEDIKGGEKV-LSVYFL 262
            VAQE+I    + +   S      Y +E +    I  +L  +   + +K    +  S+  +
Sbjct: 188  VAQERIATNMVHIFKKSQPAPYTYFAEIRSVAEIGSKLPSIFSLKVVKNLRVIRASINLV 247

Query: 263  STEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALK 322
              +IP+ I+F ALG +SDKEI++ I +   D  +   L  S+ +A    D+     +AL 
Sbjct: 248  KQDIPVLIIFRALGFNSDKEILSYIQYD-NDKELNEYLLNSLEEASCIQDQL----SALD 302

Query: 323  YVDKLIKGTTFPPGESTE---ECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGR 375
            ++ K       P  +  +   + +     P +   +    +KA FLGYM+  +L   +G+
Sbjct: 303  FIGKRSAPIGSPKSKRIDFAKQILIKEFLPHIGQQEFCETKKAYFLGYMINKILLVITGK 362

Query: 376  RKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDAS 435
            R  D+RD +  KR++L+G LL    KV          K LQ+ +  +R    +   L +S
Sbjct: 363  RDVDDRDHYGKKRMDLSGPLLANLFKVLFKKLLTETTKYLQKCVENNREFN-LTIGLKSS 421

Query: 436  ILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDA 495
            I+T G   A +TG W H  K     +G+   L R N L TL  LRR    ++  GK+   
Sbjct: 422  IITQGFKYALATGNWGHQEKAMSTRAGVAQVLSRYNFLSTLSHLRRVNTPIEKEGKLAAP 481

Query: 496  RYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-----SILEPIFEQLFNSGMEKLA 550
            R  H +HWG IC + TP+G  CGLVKNL +   +S       I+E I E+L   G+E+L 
Sbjct: 482  RQLHNTHWGMICPIETPEGHACGLVKNLSLMAYISVGKSSNQIIE-ILEEL---GVERL- 536

Query: 551  DDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIF 610
            ++  Y  G K  + V+G WIGV  D +  V  L++ RR  E+ +++ I  D  ++E++I 
Sbjct: 537  EEIEYIYGTK--ILVNGAWIGVTSDPVRIVQILKKFRRHGEIDSEISIIFDIKENEIKIN 594

Query: 611  MDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWG 664
             DAGR  RPL +VEN         I+ L+     +  L+ +G IEL+  EEEE    A G
Sbjct: 595  SDAGRPCRPLFIVENNELLVNKQDIEDLKNIKIKWDDLIKNGKIELLDIEEEEVSLIAMG 654

Query: 665  IKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFP 724
                L D++D    ++THCE+  + +LG++  +IPF  H+ + R  YQS     QA+G  
Sbjct: 655  ----LNDLKDTNK-QYTHCEIHPAIILGITASVIPFPTHNPSPRNTYQSA-MGKQAMGIY 708

Query: 725  TTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVH 784
            +TN   R+DTLS+ L YPQ+PL  T                +   EL +GQN IVA+  +
Sbjct: 709  STNFFKRMDTLSNILCYPQKPLVST-----------KSMEYIKFKELPSGQNCIVAIACY 757

Query: 785  LGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRR--SSDDMVNFGKIQSKI 842
             GYNQEDS++MN+AS++RG+FRS   R+Y  +   K   V  +    +  V F   + K 
Sbjct: 758  SGYNQEDSIIMNQASIDRGLFRSFLFRTYSDQEKMKYTGVNEKICKIERSVIF---RPKK 814

Query: 843  GRVDSLDDDGFPFIGANLQSGDIVIGKY--------ADSG------ADHSIKLKHTERGM 888
               D L +DG    G  +   D++IGK         +  G       D S  ++ TE+G 
Sbjct: 815  NNYDILGNDGIVCPGTQVYGDDVIIGKMTPILDVEKSTPGNPFYLFKDTSTLIRKTEQGN 874

Query: 889  VQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVP 948
            + KV++++ D G  F+ V +R +R P +GDKF+S H QKGV+G    QE+ PFT  G++P
Sbjct: 875  IDKVIVTTKD-GYKFTKVKVRSMRIPQMGDKFASRHAQKGVVGITLKQEDMPFTSDGLIP 933

Query: 949  DIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP--SVDAITEQLH 1006
            D++INPHA PSR T G L EA LGK          +G++  ATPFA    ++D I+++L 
Sbjct: 934  DVIINPHAIPSRMTIGHLFEALLGKLTT------LNGIEGDATPFANKPQTIDEISKELA 987

Query: 1007 RAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVA 1066
            + G+ K G E ++ G TG  ++S IFIGPT+YQRL HM +DK+  R  GP+  +TRQPV 
Sbjct: 988  KYGYQKRGFEIMHSGATGYKLKSQIFIGPTYYQRLKHMVDDKLHARARGPLQIMTRQPVE 1047

Query: 1067 DRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGG 1126
             R R GG++FGEMERDC+I+HGA+A L ERL  +SD Y   +C  C  + N         
Sbjct: 1048 GRSREGGLRFGEMERDCIISHGASAFLKERLMDVSDVYTCGVCDNCGLICNNNCTGC--- 1104

Query: 1127 RKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                        +   I   N+PY  KLL QEL  M I ++  T+
Sbjct: 1105 ------------NNSTISNINIPYAFKLLIQELQGMNIFMRIQTQ 1137


>gi|302668317|ref|XP_003025731.1| hypothetical protein TRV_00102 [Trichophyton verrucosum HKI 0517]
 gi|291189857|gb|EFE45120.1| hypothetical protein TRV_00102 [Trichophyton verrucosum HKI 0517]
          Length = 1205

 Score =  597 bits (1540), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 406/1207 (33%), Positives = 607/1207 (50%), Gaps = 152/1207 (12%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGE--WRY 83
            C     +FF   GLVS Q++S++EFI   +Q+  +  G+  ++    PS         R 
Sbjct: 24   CWTVISAFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTVPPSDDEPDPVVLRR 83

Query: 84   ASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT-QKRVTSD 142
              ++FG V L +PS   G+G     M P+ ARL+N+TY+S + + +  ++   ++R+ S+
Sbjct: 84   YELKFGTVMLARPSMTEGDGATSI-MLPQEARLRNLTYASPLYLGISKKIMEGRERLLSE 142

Query: 143  KF-------------KTGREQYI---QKEVLSDETT--NIIIGRIPVMVKSDLCWMKGVE 184
            +              +  R  Y+   +K  + DE    NI IG++P+M+KS  C +K + 
Sbjct: 143  RDEEEEEIEEKGDEERRNRGTYLHWERKPTMEDEAEEENIFIGKMPIMLKSKYCILKDLG 202

Query: 185  K------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENK 233
            +       +C +D GGYF+I G+EKV +AQE+     + V      +   +    +S  +
Sbjct: 203  EQALYNWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAVE 262

Query: 234  RNRLIVRLVDM---SKFEDIKGG--EKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLI 287
            +   I+  + +   SK +  KGG    + S   ++ T+IPI ++F ALGV SD++I+N I
Sbjct: 263  KGSRILSQLSIKLFSKGDSAKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDEDILNHI 322

Query: 288  DFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTY- 346
             +   D  +L +L   I +     D       AL ++ K  +G++  P    +E    Y 
Sbjct: 323  CYDRNDTPMLEMLKPCIEEGFVIQDR----EVALDFISK--RGSS--PMSMNQEKRVRYA 374

Query: 347  -------LFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGEL 395
                     P +  ++    +KA FLGYMV  LLQ   GRR  D+RD F  KRL+LAG L
Sbjct: 375  RDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPL 434

Query: 396  LERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFK 455
            L    +V      K + K +QR +   R +  +   + AS LT GL  A +TG W    K
Sbjct: 435  LANLFRVLFMRLTKDLYKYVQRCVETGRQLY-LNIGVKASTLTGGLKYALATGNWGEQKK 493

Query: 456  RTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGE 515
                 +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+
Sbjct: 494  AASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQ 553

Query: 516  NCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCK 574
             CGLVKNL +   ++  +  EPI + +    ME L +          KVFV+G W+GV +
Sbjct: 554  ACGLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTKVFVNGVWVGVHR 613

Query: 575  DSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK------ 628
            D    V  ++  RRR  +  +V +  D    E +IF DAGR+ RPL VV+N  K      
Sbjct: 614  DPAHLVGTVQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSENSGS 673

Query: 629  -------IKSLEG---------------KNYTFQALLDHGIIELVGTEEEEDCCTAW--- 663
                   I  LE                +++ +  L+  G+IE V  EEEE         
Sbjct: 674  LVLVKEHIHKLEADKELPPDLDPEERRERHFGWDGLVKSGVIEYVDAEEEETIMIVMTPE 733

Query: 664  ----------GIKYLLKDIEDK----------KPIKFTHCELDMSFLLGLSCGIIPFANH 703
                      G     +D  D+          K   +THCE+  S +LG+   IIPF +H
Sbjct: 734  DLEASKQYQAGYGMPEEDTTDRNRRVKSNLSQKAHTWTHCEIHPSMILGICASIIPFPDH 793

Query: 704  DHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHN 763
            + + R  YQS     QA+G   TN   R++T+++ L+YPQ+PL  T   +          
Sbjct: 794  NQSPRNTYQS-AMGKQAMGVFLTNFEQRMETMANILYYPQKPLATTRSME---------- 842

Query: 764  HILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQ 823
              L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y        + 
Sbjct: 843  -FLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLT 901

Query: 824  VKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD----------- 872
            V  R    M +   ++ K G  D +DDDG    G  +   DI+IGK +            
Sbjct: 902  VVERFEKPMRS-DTLRMKHGTYDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEAEELGQR 960

Query: 873  ----SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKG 928
                +  D S  L+ TE G+V +V++S+++D   F  V +R  + P +GDKF+S HGQKG
Sbjct: 961  TKQHTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKG 1020

Query: 929  VLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKR 988
             +G     E+ PFT +G+ PD++INPHA PSR T   L+E  L K          S L+ 
Sbjct: 1021 TIGITYRHEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSK---------VSSLRG 1071

Query: 989  Y---ATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMS 1045
            Y   ATPF   +VD+++  L   G+   G E +Y+G TG  + + +F+GPT+YQRL HM 
Sbjct: 1072 YEGDATPFTDVTVDSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMV 1131

Query: 1046 EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQ 1105
            +DK+  R  GP   LTRQPV  R R GG++FGEMERDC+IAHGA++ L ERLF +SD ++
Sbjct: 1132 DDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASSFLKERLFDVSDPFR 1191

Query: 1106 MHICRKC 1112
            +HIC  C
Sbjct: 1192 VHICEIC 1198


>gi|302507686|ref|XP_003015804.1| hypothetical protein ARB_06116 [Arthroderma benhamiae CBS 112371]
 gi|291179372|gb|EFE35159.1| hypothetical protein ARB_06116 [Arthroderma benhamiae CBS 112371]
          Length = 1205

 Score =  597 bits (1538), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 406/1207 (33%), Positives = 607/1207 (50%), Gaps = 152/1207 (12%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGE--WRY 83
            C     +FF   GLVS Q++S++EFI   +Q+  +  G+  ++    PS         R 
Sbjct: 24   CWTVISAFFESKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTVPPSDDEPDPVVLRR 83

Query: 84   ASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT-QKRVTSD 142
              ++FG V L +PS   G+G     M P+ ARL+N+TY+S + + +  ++   ++R+ S+
Sbjct: 84   YELKFGTVMLARPSMTEGDGATSI-MLPQEARLRNLTYASPLYLGISKKIMEGRERLLSE 142

Query: 143  KF-------------KTGREQYI---QKEVLSDETT--NIIIGRIPVMVKSDLCWMKGVE 184
            +              +  R  Y+   +K  + DE    NI IG++P+M+KS  C +K + 
Sbjct: 143  RDEEEEEIEEKGDEERRNRGTYLHWERKPTMEDEAEEENIFIGKMPIMLKSKYCILKDLG 202

Query: 185  K------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENK 233
            +       +C +D GGYF+I G+EKV +AQE+     + V      +   +    +S  +
Sbjct: 203  EQALYNWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAVE 262

Query: 234  RNRLIVRLVDM---SKFEDIKGG--EKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLI 287
            +   I+  + +   SK +  KGG    + S   ++ T+IPI ++F ALGV SD++I+N I
Sbjct: 263  KGSRILSQLSIKLFSKGDSAKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDEDILNHI 322

Query: 288  DFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTY- 346
             +   D  +L +L   I +     D       AL ++ K  +G++  P    +E    Y 
Sbjct: 323  CYDRNDTPMLEMLKPCIEEGFVIQDR----EVALDFISK--RGSS--PMSMNQEKRVRYA 374

Query: 347  -------LFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGEL 395
                     P +  ++    +KA FLGYMV  LLQ   GRR  D+RD F  KRL+LAG L
Sbjct: 375  RDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPL 434

Query: 396  LERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFK 455
            L    +V      K + K +QR +   R +  +   + AS LT GL  A +TG W    K
Sbjct: 435  LANLFRVLFMRLTKDLYKYVQRCVETGRQLY-LNIGVKASTLTGGLKYALATGNWGEQKK 493

Query: 456  RTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGE 515
                 +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+
Sbjct: 494  AASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQ 553

Query: 516  NCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCK 574
             CGLVKNL +   ++  +  EPI + +    ME L +          KVFV+G W+GV +
Sbjct: 554  ACGLVKNLALMCCITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTKVFVNGVWVGVHR 613

Query: 575  DSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK------ 628
            D    V  ++  RRR  +  +V +  D    E +IF DAGR+ RPL VV+N  K      
Sbjct: 614  DPAHLVGTVQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSENSGS 673

Query: 629  -------IKSLEG---------------KNYTFQALLDHGIIELVGTEEEEDCCTAW--- 663
                   I  LE                +++ +  L+  G+IE V  EEEE         
Sbjct: 674  LVLVKEHIHKLEADKELPPDLDPEERRERHFGWDGLVKSGVIEYVDAEEEETIMIVMTPE 733

Query: 664  ----------GIKYLLKDIEDK----------KPIKFTHCELDMSFLLGLSCGIIPFANH 703
                      G     +D  D+          K   +THCE+  S +LG+   IIPF +H
Sbjct: 734  DLEASKQYQAGYGMPEEDTTDRNRRVKSNLSQKAHTWTHCEIHPSMILGICASIIPFPDH 793

Query: 704  DHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHN 763
            + + R  YQS     QA+G   TN   R++T+++ L+YPQ+PL  T   +          
Sbjct: 794  NQSPRNTYQS-AMGKQAMGVFLTNFEQRMETMANILYYPQKPLATTRSME---------- 842

Query: 764  HILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQ 823
              L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y        + 
Sbjct: 843  -FLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLT 901

Query: 824  VKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD----------- 872
            V  R    M +   ++ K G  D +DDDG    G  +   DI+IGK +            
Sbjct: 902  VVERFEKPMRS-DTLRMKHGTYDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEAEELGQR 960

Query: 873  ----SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKG 928
                +  D S  L+ TE G+V +V++S+++D   F  V +R  + P +GDKF+S HGQKG
Sbjct: 961  TKQHTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKG 1020

Query: 929  VLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKR 988
             +G     E+ PFT +G+ PD++INPHA PSR T   L+E  L K          S L+ 
Sbjct: 1021 TIGITYRHEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSK---------VSSLRG 1071

Query: 989  Y---ATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMS 1045
            Y   ATPF   +VD+++  L   G+   G E +Y+G TG  + + +F+GPT+YQRL HM 
Sbjct: 1072 YEGDATPFTDVTVDSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMV 1131

Query: 1046 EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQ 1105
            +DK+  R  GP   LTRQPV  R R GG++FGEMERDC+IAHGA++ L ERLF +SD ++
Sbjct: 1132 DDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASSFLKERLFDVSDPFR 1191

Query: 1106 MHICRKC 1112
            +HIC  C
Sbjct: 1192 VHICDIC 1198


>gi|302832249|ref|XP_002947689.1| hypothetical protein VOLCADRAFT_103593 [Volvox carteri f.
            nagariensis]
 gi|300267037|gb|EFJ51222.1| hypothetical protein VOLCADRAFT_103593 [Volvox carteri f.
            nagariensis]
          Length = 1206

 Score =  596 bits (1537), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 408/1221 (33%), Positives = 617/1221 (50%), Gaps = 132/1221 (10%)

Query: 31   VSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP--GYDPSKKGEGEWRYASMRF 88
             +FF++ GLV  Q++S+NEF+   +Q+  D   E +++P   + P  +   E  Y  ++F
Sbjct: 31   TAFFDDKGLVRQQLDSFNEFVNVTIQEIIDETPEIVIKPESQHLPGVEAHEEKEYI-IKF 89

Query: 89   GQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGR 148
            GQV L +P     +G +   +FP+ ARL+N+TY + + V V    YT  R   D  +   
Sbjct: 90   GQVYLSRPQITEQDG-ESVVLFPKEARLRNLTYCAPLYVDVTKTEYT--RQADDTVEE-- 144

Query: 149  EQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM-------KGVEKGDCDFDHGGYFIIKGA 201
                ++E LS    ++ +G++P+M+KS+ C +       +    G+C +D GGYF+I G+
Sbjct: 145  ----KQETLS----HVHLGKVPIMLKSERCNLHEAATEQEATNLGECPYDQGGYFVINGS 196

Query: 202  EKVFVAQEQICLKRLWV---SNSMGWT-------VAYKSENKRNRLIVRLVDMSKFEDIK 251
            EKV +AQE++    ++V   S    +T       V   S    + + + ++   K     
Sbjct: 197  EKVLIAQERMANNHVYVFKKSQPSKYTFCAEIRSVVEGSTRSASSMSIMMLAKGKKAGAA 256

Query: 252  GGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCE-DCSILNILFASIHDADNK 310
            G  +   + ++  E PI+ILF ALG  SD++I+  I +  + D ++L  L AS+ +A   
Sbjct: 257  GVIRA-QIPYIRAEFPIFILFRALGFVSDRDILEHIVYDLDSDPAMLEALRASVEEAQ-- 313

Query: 311  CDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTY---LFPSLHGTKQ-----KARFLG 362
              E +    AL Y+ K    T     +  +   N     L P L GT++     K  F+G
Sbjct: 314  --EVQTQEEALNYLGKRGTVTGASKADRIQYARNLLIKELLPHL-GTEEFMETRKGYFVG 370

Query: 363  YMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGD 422
            YMV  L+    GRR  D+RD + NKRL+L G L+    ++      K +    QR +   
Sbjct: 371  YMVHRLMLVALGRRPEDDRDHYANKRLDLGGPLMAGLFRLLFRKLCKELRMHAQRMVDAG 430

Query: 423  RTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
            + +  +   ++  I+T GL  + +TG W    K+  R +G+   L R     TL  LRR 
Sbjct: 431  KEINVLSA-INEKIITRGLKYSLATGNWGEQGKQGIR-AGVSQVLARLTYASTLSHLRRV 488

Query: 483  RQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQL 541
               +   GK+   R  H S WG  C   TP+G+  GLVKN+ +   ++      P+   L
Sbjct: 489  NSPIGREGKLAKPRQLHNSLWGMFCPAETPEGQAVGLVKNMALMCYITVGTPSLPVVAHL 548

Query: 542  FNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
                 E L +     +    KVF++G W+G+ +D  + +  LR  RR+    T+V I  D
Sbjct: 549  EEFNTEALDEVTPADIAAATKVFINGVWLGIQRDPTALIKNLRAMRRQVAFSTEVSIIYD 608

Query: 602  ELQSEVRIFMDAGRILRPLLVVEN------MGKIKSL-----EGKNYTFQALLDHGIIEL 650
                E+RIF D GR  RPL +VE+         I+ L     + + Y +  L+  G++E 
Sbjct: 609  GPLKELRIFTDYGRTSRPLYIVEDNRLLVTKNHIRRLISPLPDEEEYAWPQLVQDGLVEY 668

Query: 651  VGTEEEEDCCTAWGIKYL--LKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARR 708
            +  EEEE    A  I  L   ++        +THCE+  + +LG+   IIPF +H+ + R
Sbjct: 669  IDAEEEETTMIAMTIADLRNAREAGSATGTTYTHCEIHPAMILGVCASIIPFPDHNQSPR 728

Query: 709  VLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPR 768
              YQS     QA+G   TN   R+DT    L+YPQ+PL  T   D            L  
Sbjct: 729  NTYQS-AMGKQAMGMYATNYQTRMDTQGFVLYYPQKPLVCTRAMD-----------YLKF 776

Query: 769  PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRS 828
             EL  G NAIVA+  + GYNQEDSL++N +S++RG  RS   R+YK E + K   + R  
Sbjct: 777  RELPAGINAIVAIMCYSGYNQEDSLMLNGSSIDRGFHRSIFYRAYKEE-EKKAGSLSREE 835

Query: 829  SDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD-----SGA-------D 876
             +        + K G  D LD DG    G  +   DI+ GK        +GA       D
Sbjct: 836  IEAPDPVVTAKMKHGTYDKLDADGLCPPGTRVSGEDIICGKTVTLPDDPTGAVQRFTKKD 895

Query: 877  HSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ 936
             S+ L+  E G++ +V+L++ND+G+ F  + +R +  P +GDKF+S HGQKG  G   + 
Sbjct: 896  ASLALRGHEAGVIDQVMLTTNDEGQKFVKIRVRTICIPQVGDKFASRHGQKGTCGITYTM 955

Query: 937  ENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP 996
            E+ PF+ +GIVPDI++NPHA PSR T G L+EA + K +AAL      G +  ATPF   
Sbjct: 956  EDMPFSAEGIVPDIIVNPHAIPSRMTIGHLVEALMSK-VAAL-----MGSEGDATPFTKV 1009

Query: 997  SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGP 1056
            +VD +++ LH  G+ + G E +Y+G TG  +R+ IF+ PT+YQRL HM + K+  R  GP
Sbjct: 1010 TVDNVSQMLHDLGYQRRGWEVMYNGHTGRQLRAQIFLNPTYYQRLKHMVDFKIHSRGRGP 1069

Query: 1057 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKC---- 1112
            V  LTRQP   R R GG++FGEMERDC+I+HGAAA L ERLF  SD+Y++H+C +     
Sbjct: 1070 VQVLTRQPAEGRARDGGLRFGEMERDCIISHGAAAFLKERLFDQSDAYRVHVCERSGLIA 1129

Query: 1113 --------------KNVANVIQR--------VVGGGRKVRGPYCRICDSGDDIVKANVPY 1150
                          K+ +N+ Q           GGG      Y R+ +         VPY
Sbjct: 1130 VANLKKQQFTSTIYKDGSNIYQASYRRNPRWAAGGG------YKRMWNK-----DVYVPY 1178

Query: 1151 GAKLLCQELFSMGITLKFDTE 1171
              KLL QEL +M I  +   E
Sbjct: 1179 ACKLLFQELMAMCIAPRMQFE 1199


>gi|323449816|gb|EGB05701.1| hypothetical protein AURANDRAFT_38329 [Aureococcus anophagefferens]
          Length = 1233

 Score =  596 bits (1536), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 407/1270 (32%), Positives = 628/1270 (49%), Gaps = 185/1270 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP--GYDPSKKGEGEWRYASMRFG 89
            ++F E GLV  Q++S++EFI+N +Q+  D  GE +V+P   Y P +       Y  + F 
Sbjct: 14   AYFAEKGLVRQQLDSFDEFIQNTMQELVDDSGELVVKPEAQYAPGQLAATPSTYFVL-FN 72

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVT--------- 140
            QV + KP+    +G    +MFP  ARL+NMTY+S M V +      QK+ +         
Sbjct: 73   QVYVSKPTATEKDGTTS-NMFPHEARLRNMTYASPMYVDIS--CVEQKQASPLRQGCAAE 129

Query: 141  ---------------SDKFKTGREQYI--------QKEVLSDETTNI------------- 164
                           SD + T   + +        Q +V+ +   ++             
Sbjct: 130  LEIHGDWYPCVITKLSDGYATVTYEVVGPIHSGDDQIQVVEEHHVDVSARVRLINGGSST 189

Query: 165  --------IIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQ 210
                     +G +P+M++S  C +         E G+C +D GGYF+I G+EKV VAQE+
Sbjct: 190  HRIDSPKEFLGYVPIMLRSRFCVLADKSDKELCELGECIYDQGGYFVINGSEKVVVAQER 249

Query: 211  ICLKRLWV-----SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDI-----KGGEKVLSVY 260
            +    ++       +   W V  +S  +        + M  +        +G +  +++ 
Sbjct: 250  MSNNHVYCFRKKQPHKYSWVVECRSHVEHGARPTSTIYMQMYNKAGRGQSQGNQIRVTLP 309

Query: 261  FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA---DNKCDEF--- 314
            ++  ++P+ ++F ALG  +D++I+  + +   D  ++  L  S+ +A    N+       
Sbjct: 310  YVRVDVPVIVVFRALGFVADRDILEHVVYDFSDTEMMERLRPSLDEAFVIQNQTIALDFI 369

Query: 315  -RKGRNA-------LKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVK 366
             R+G          ++Y  +L++    P    TEE  +T          +KA F+GY+V 
Sbjct: 370  GRRGSATNIGRSKRVQYAKELLQKEVLP-HVGTEEQSDT----------KKAFFVGYIVH 418

Query: 367  CLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR 426
             LL     R   D+RD +  KRL+LAG LL    ++      K +   LQ+ +   R   
Sbjct: 419  KLLMCSLERIDEDDRDHYGKKRLDLAGPLLGGLFRMLFRKLTKDVLAYLQKCIDDGRDFN 478

Query: 427  PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
             +   + + ++T+GL  + +TG W    ++    +G+   L R     TL  LRR    +
Sbjct: 479  -LASAIKSRVVTDGLRYSLATGNWGD--RKDASRAGVSQVLNRLTYASTLSHLRRLNTPL 535

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSG 545
               GK    R  H +HWG IC   TP+G+  GLVKNL +   VS  S   PI E L    
Sbjct: 536  GREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMSYVSVGSPQSPILEFLEEWS 595

Query: 546  MEKLADDASYSLG--GKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDEL 603
            ME L + +  ++   G  K+FV+G W+GV +D  +  S LR  RR+ ++  +V + RD  
Sbjct: 596  MENLEEISPQTIADPGTTKIFVNGSWVGVHRDPSTLESTLRSLRRQIDIDPEVSVVRDIK 655

Query: 604  QSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQ--------------------ALL 643
            + E+R++ DAGR+ RPLL+VE    +  +  +  TFQ                     LL
Sbjct: 656  EKELRVYTDAGRVCRPLLIVEAASTVTRVRSQEATFQELRLRKSHVQKLVNGDLGWTQLL 715

Query: 644  DHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANH 703
              G++EL+ TEEEE       I  +  D+ +     +THCE+  S +LG+   IIPF +H
Sbjct: 716  VKGLVELIDTEEEETAM----IAMIPSDLNEPYSSTYTHCEIHPSMILGICGSIIPFPDH 771

Query: 704  DHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHN 763
            + + R  YQS     QA+G   +N   R+DTLSH L YPQ+PL  T   +        H 
Sbjct: 772  NQSPRNTYQSAM-GKQAMGIYASNFQQRMDTLSHVLHYPQKPLATTRAME--------HL 822

Query: 764  HILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNK--- 820
            H     EL +G NAIVA+  + GYNQEDSL+MN+A+++RG+FRS   R+Y  +  NK   
Sbjct: 823  HFR---ELPSGVNAIVAIMCYTGYNQEDSLIMNQAAIDRGLFRSTFYRTYSDKEHNKGIW 879

Query: 821  ------EMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADS- 873
                  +   +R + D+         + G  + +D DG    G  +   DI++GK + S 
Sbjct: 880  DSPEYLQETFERPNRDECTAM-----RHGSYEKIDSDGLVSPGVRVSGSDILVGKTSPSW 934

Query: 874  ------------GADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFS 921
                          D S  ++  E G+V +V+LS+N DG  F+ V  R +R P +GDKF+
Sbjct: 935  HSGLKAERSGPSKRDSSTTMRPNESGLVDQVMLSTNQDGMKFTKVRTRTIRIPQIGDKFA 994

Query: 922  SMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKG 981
            S HGQKG +G   +QE+ P+T  G+ PDI++NPHA PSR T G L+E    K       G
Sbjct: 995  SRHGQKGTIGMTYAQEDMPWTRDGVSPDIIVNPHAIPSRMTIGHLVECLQSK------VG 1048

Query: 982  ICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRL 1041
              +G +  ATPF   SVD I   LH  G+ + G E +Y G TG ++ + +F+GPTFYQRL
Sbjct: 1049 ALTGKEGDATPFTDVSVDQIAGVLHELGYHRHGNEVMYSGHTGRIIHAKVFLGPTFYQRL 1108

Query: 1042 IHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLS 1101
             H+ +DK+  R+ GPV  LTRQP+  R R GG++ GEMERDCLI+HG ++ L +R+F  S
Sbjct: 1109 KHLVDDKIHARSRGPVTMLTRQPMEGRARDGGLRMGEMERDCLISHGVSSFLRDRMFANS 1168

Query: 1102 DSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICD---SGDDIVKANVPYGAKLLCQE 1158
            D Y +H+C  C  +A+   R        R  +C   D   +   IV+ ++PY  KLL QE
Sbjct: 1169 DPYSIHVCTLCGLIAHADLR-------KRAFWCNNKDCQHANSSIVRVHIPYACKLLFQE 1221

Query: 1159 LFSMGITLKF 1168
            L +M I  + 
Sbjct: 1222 LMAMCIAPRI 1231


>gi|429964497|gb|ELA46495.1| hypothetical protein VCUG_02039 [Vavraia culicis 'floridensis']
          Length = 1194

 Score =  595 bits (1535), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 414/1258 (32%), Positives = 620/1258 (49%), Gaps = 181/1258 (14%)

Query: 20   EFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEG 79
            E  +  C  A  S F++YGLV  Q++S++EFI+  +Q+  D     IV+    PS  G+ 
Sbjct: 3    EITEEDCWTAISSHFDQYGLVRQQLDSFDEFIETTMQEIIDENNTLIVQS--IPSA-GKE 59

Query: 80   EWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRV 139
              +   ++FGQ+ + KP       G  + +FP  ARL+++TY+  + V V   V  +   
Sbjct: 60   SVQKIILKFGQIYISKPPVITEQDGKTNTLFPCEARLRDLTYACPLYVDVTKSV-AENEE 118

Query: 140  TSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHG 193
            + D F      Y Q          + IG +PVM++S  C + G+      E G+C +D G
Sbjct: 119  SDDHF------YRQ----------VPIGLVPVMLRSSCCILHGLSDKNLTELGECPYDQG 162

Query: 194  GYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR---------NRLIVRLVDM 244
            GYFII G+EKV +AQE++    + V      T  + +E +          + LIV+LV  
Sbjct: 163  GYFIINGSEKVLIAQERMATNVVHVFEKSVSTYTHYAEIRSAPQKGSKTPSALIVKLVKK 222

Query: 245  SKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASI 304
            ++ E +       ++  +  +IP+ +++ ALG  SDKEI+  + +   D  +L ++  SI
Sbjct: 223  TETEFLLRA----TLPGVRQDIPVIVIYRALGFVSDKEIMEHLIYDPNDKEMLQVIRPSI 278

Query: 305  HDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLHGTKQ- 356
             +A    D+      AL Y+ K     + P G   E       + +     P + G KQ 
Sbjct: 279  EEAFVIQDQ----NVALDYIGK----RSAPAGSPREKRIQFAKDILTREFLPHI-GDKQF 329

Query: 357  ----KARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMA 412
                KA F GYM++ LL     R   D+RD +  KR++LAG LL +  KV      +   
Sbjct: 330  CETRKAFFFGYMIQRLLNCAMKRVTPDDRDHYGKKRMDLAGPLLAQLFKVLFRKLCQETI 389

Query: 413  KALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANP 472
            K +Q+ +   R    I   L  SI+T G   + +TG W    +  +  +G+   L R N 
Sbjct: 390  KHMQKCIENKRDFN-IALGLKTSIITQGFRYSLATGNWGEQARAMQTKAGVAQVLNRYNF 448

Query: 473  LQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTS 532
            + TL  LRR    +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S +
Sbjct: 449  ISTLSHLRRVNSPMGREGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLLAYISVN 508

Query: 533  -ILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKE 591
              +E + E L   G++ L + A+  +    KVFV+G W+G+  +     + L+R +R+  
Sbjct: 509  HPIEGVVELLEEFGLKSLEEVAASEVNKATKVFVNGTWLGITTEREFLYTVLKRMKRQAR 568

Query: 592  LPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNY------TFQALLDH 645
            +   V I +     E+RI  DAGR  RP  VVEN   + + E  N        ++ L+++
Sbjct: 569  IHKDVSIVQSLRDKEIRILCDAGRPCRPCFVVENNRILFTAEHANMLREGKMIWEDLVNN 628

Query: 646  GIIELVGTEEEEDCCTAWGIKYLLKD---------------------------------I 672
            GI+E +  EEE+          L K                                  I
Sbjct: 629  GIVEYLDVEEEDQAMICMSPDELYKQQMVTDRVNAELRGERGESVERSKGHASRNMGKHI 688

Query: 673  EDKKP--------IKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFP 724
                P          +THCE+  S +LG+   +IPF +H+ + R  YQS   S QA+G  
Sbjct: 689  APATPGDDLHDLITNYTHCEIHPSMILGICASMIPFPDHNQSPRNTYQS-AMSKQAMGVY 747

Query: 725  TTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVH 784
             TN  +R+D+LS+ LFYPQ+PL  T   +            L   EL  GQNAIVA+  +
Sbjct: 748  ATNFLLRMDSLSNILFYPQKPLVTTRAME-----------YLRFRELPAGQNAIVAIACY 796

Query: 785  LGYNQEDSLVMNRASLERGMFRSEHIRSYK-AEVDNK----EMQVKRRSSDDMVNFGKIQ 839
             GYNQEDS++MN+++++RG+FRS   R+Y   E  N     E+  K R  +       ++
Sbjct: 797  TGYNQEDSVIMNQSAIDRGLFRSFLYRTYTDQETMNGPGCVEVFAKPRRGE------VLR 850

Query: 840  SKIGRVDSLDDDGFPFIGANLQSGDIVIGKY--------ADSGA---------------- 875
             K    D LD+DG    GA +   D++IGK         AD GA                
Sbjct: 851  MKNLNYDKLDEDGIVNPGARVTGEDVLIGKILPVIERTGADGGALIDNKDGKINTESNAT 910

Query: 876  -----DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVL 930
                 D S  ++ TE G+V  V+++ N +G  F+ V +R  R P +GDKF+S HGQKG +
Sbjct: 911  NVSWKDASTAMRPTEEGVVDSVIVT-NREGYKFTKVKIRSCRVPEMGDKFASRHGQKGTI 969

Query: 931  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYA 990
            G     E+ PFT +GI+PDI+INPH  PSR T G L+E  LGK ++AL     +G +   
Sbjct: 970  GITLRAEDMPFTSEGIIPDIIINPHCIPSRMTIGHLIECLLGK-VSAL-----AGEEGDG 1023

Query: 991  TPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVK 1050
            TPF+  +V+AI+EQL   G+   G E +Y+G TG  + + IFIGPT+YQRL HM +DKV 
Sbjct: 1024 TPFSDVTVEAISEQLKDFGYEHRGLETMYNGMTGRKLDAQIFIGPTYYQRLKHMVQDKVH 1083

Query: 1051 FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICR 1110
             R  GP+  LTRQP   R R GG++FGEMERDC+I+HG +  L ERLF +SD + + +C 
Sbjct: 1084 ARAHGPLQVLTRQPAEGRSRDGGLRFGEMERDCIISHGTSLFLRERLFEVSDFFSLIVCE 1143

Query: 1111 KCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
            +C             G       C+ C +   +    +PY  KLL QEL  M I  + 
Sbjct: 1144 QC-------------GLFCLEDGCKGCGNKTKLAIVEMPYAFKLLLQELMGMNIAPRL 1188


>gi|5514652|emb|CAA29180.2| RNA polymerase [Drosophila melanogaster]
          Length = 1123

 Score =  595 bits (1535), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 397/1151 (34%), Positives = 594/1151 (51%), Gaps = 130/1151 (11%)

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKF 144
            S++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +     T+     D  
Sbjct: 33   SLKFEQIYLSKPTHWEKDGSPS-PMMPNEARLRNLTYSAPLYVDI---TKTKNVEGLDPV 88

Query: 145  KTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFII 198
            +T  ++               IG+IP+M++S  C +  +      E  +C  D GGYFII
Sbjct: 89   ETQHQK-------------TFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFII 135

Query: 199  KGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVRLVDMSK-FEDI 250
             G+EKV +AQE++    ++V +      A+K+E       + R    + +  M++  ++I
Sbjct: 136  NGSEKVLIAQEKMATNTVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNI 195

Query: 251  KG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHD 306
            K    G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  ++ ++  S+ +
Sbjct: 196  KKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDE 255

Query: 307  A-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEECMNTYLFPSLH 352
            A      N    F   R A         +KY  ++++    P    ++ C          
Sbjct: 256  AFVVQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFC---------- 305

Query: 353  GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMA 412
               +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL    +    +  K + 
Sbjct: 306  -ETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVR 364

Query: 413  KALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANP 472
               Q+ +   +    +E  +  +I+T+GL  + +TG W    K  +  +G+   L R   
Sbjct: 365  MYTQKFIDRGKDFN-LELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTF 423

Query: 473  LQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST- 531
              TL  LRR    +   GK+   R  H + WG +C   TP+G   GLVKNL +   +S  
Sbjct: 424  ASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVG 483

Query: 532  SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKE 591
            S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    ++ LR+ RR+ +
Sbjct: 484  SQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKLRRQMD 543

Query: 592  L-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKSLEGKNYTFQA 641
            +  ++V + RD    E+RI+ DAGRI RPLL+VEN         +  +K  +  NY++Q 
Sbjct: 544  IIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKERDYNNYSWQV 603

Query: 642  LLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFA 701
            L+  G++E + T EEE    A     L +D +      +THCE+  + +LG+   IIPF 
Sbjct: 604  LVASGVVEYMYTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMILGVCASIIPFP 663

Query: 702  NHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYG 761
            +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T   +        
Sbjct: 664  DHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSME-------- 714

Query: 762  HNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKE 821
                L   EL  G N+IVA+  + GYNQEDS+++N +++ERG FRS   RSYK + +NK 
Sbjct: 715  ---YLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYK-DSENK- 769

Query: 822  MQVKRRSSDDMVNFGKIQS------KIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD--- 872
                 R  D   NF K         +    D LDDDG    G  +   D+VIGK      
Sbjct: 770  -----RVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPE 824

Query: 873  ------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKF 920
                        S  D S  L+++E G+V +V+L+ N +G  F  + +R VR P +GDKF
Sbjct: 825  NDDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKF 884

Query: 921  SSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGK 980
            +S HGQKG  G    QE+  FT +G+ PDI+INPHA PSR T G L+E   GK    LG 
Sbjct: 885  ASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQGK----LGS 940

Query: 981  GICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQ 1039
                G    ATPF    +V  I+  L   G+   G E +Y+G TG  + + +F+GPT+YQ
Sbjct: 941  N--KGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTYYQ 998

Query: 1040 RLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFT 1099
            RL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC I+HGAA  L ERLF 
Sbjct: 999  RLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFE 1058

Query: 1100 LSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQ 1157
            +SD Y++HIC  C    +AN+               C+ C +   I +  +PY AKLL Q
Sbjct: 1059 VSDPYRVHICNFCGLIAIANLRNNTFE---------CKGCKNKTQISQVRLPYAAKLLFQ 1109

Query: 1158 ELFSMGITLKF 1168
            EL SM I  + 
Sbjct: 1110 ELMSMNIAPRL 1120


>gi|154342160|ref|XP_001567028.1| putative DNA-directed RNA polymerase II subunit 2 [Leishmania
            braziliensis MHOM/BR/75/M2904]
 gi|134064357|emb|CAM42447.1| putative DNA-directed RNA polymerase II subunit 2 [Leishmania
            braziliensis MHOM/BR/75/M2904]
          Length = 1185

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 406/1231 (32%), Positives = 618/1231 (50%), Gaps = 130/1231 (10%)

Query: 5    DNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGE 64
            D+GF D     +  ++       +   SFF E GLV  Q++SYN+F+   + K  +S   
Sbjct: 17   DDGFIDERDDENPNDDLDSEDIWEVISSFFREKGLVHQQLDSYNDFLMR-IPKMIESMAV 75

Query: 65   TIVEPG-YDPSKKGEGEWRYASMRFGQVTLDKPS-----FFAGNGGDEHDMFPRHARLQN 118
               +   YDP    E +     +    V +  PS     +FAG  G    +FP   RL++
Sbjct: 76   IPRQDDQYDPGVTMEEQRDQPRLVLQDVVIGNPSHQTHSYFAG--GPLPPLFPNECRLRD 133

Query: 119  MTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLC 178
            MTY ++ +V +  ++Y           T  + +++         N+ +GRIP+M+KS  C
Sbjct: 134  MTYDAQAQVTLGVELY------HPHADTPHDTFLR---------NVELGRIPIMLKSMRC 178

Query: 179  WMKGVEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKS- 230
             + G ++       +C  D GGYF+I G EKV +AQE+     ++  S   G     KS 
Sbjct: 179  NLSGKDEDELPRLNECPHDQGGYFVINGTEKVLIAQERQAANHVYTFSRQKGLLCEVKSI 238

Query: 231  -ENKRNRLIVRLVDM--------SKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDK 281
             E   N+     + M        S FE +     +  V  +   IP+++LF A+ + +DK
Sbjct: 239  VEGSLNKPRTLQIIMPYRNRGPGSGFESL-----MCRVAQMDETIPLFVLFRAMDMVADK 293

Query: 282  EIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLI--KGTTFPPGEST 339
            EI+  +    +D ++L +L  S+ DA     +      AL Y+ + +  +          
Sbjct: 294  EILQTVVPDLKDTAMLELLRGSMSDASTL--QIFTREEALGYIGRRLGKQDAMANLQREA 351

Query: 340  EECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGEL 395
            E  +   L P +       + K  ++GYMV  LL    GR +  +RD   +KR+++AG L
Sbjct: 352  ESLLMRDLLPHMGTDPSANRTKCLYMGYMVHKLLLVALGRHEETDRDFLGHKRIDVAGTL 411

Query: 396  LERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFK 455
            L  +L+  +A  RK M K LQ      R V      + + ++T+GL R  +TG +    K
Sbjct: 412  LTVQLQTFLAQVRKEMIKTLQDHAANPRGVFSFGRVIHSRLVTDGLRRCLATGNFGD-LK 470

Query: 456  RTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGE 515
                 +G+   L R     +L +LRR +  +  + K    R  H + WG IC + TP+G 
Sbjct: 471  TGNIKTGVAQTLNRLTYSSSLSNLRRIQNPIAASSKATRPRNLHCTQWGYICPVETPEGG 530

Query: 516  NCGLVKNLGVTGLVS-----TSILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWI 570
            + GL+KN+ +  L+S       +++ +  ++       L D A   +    +VFV+G  I
Sbjct: 531  SIGLLKNVALMCLMSRGTDHAEVVQAVQARIDGFRTIGLEDTADVRVA---RVFVNGTMI 587

Query: 571  GVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN----- 625
            GV ++    + +LR +RR  EL  +V I RD    E+R+F D GR LRPL VVEN     
Sbjct: 588  GVDRNPERLLHDLRTRRRNGELSNEVSIVRDIRDREIRVFSDGGRCLRPLFVVENCHLKL 647

Query: 626  --------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKP 677
                    +   K+   K+ ++  +L  G +EL+  EEE+    A      +   E +K 
Sbjct: 648  RKSSMRDLLVSEKAGGKKSISWNTVLKKGYVELIDCEEEDSLLVA------MTPSEVEKN 701

Query: 678  IKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSH 737
              ++HCE+D S +LG+   IIP+ NH+ + R  YQS     QA+G   +N ++R+DT +H
Sbjct: 702  YYYSHCEMDPSMILGICASIIPYPNHNQSPRNTYQSAM-GKQAMGIYASNFNMRMDTTAH 760

Query: 738  QLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNR 797
             LFYPQ+PL RT          Y H++ LP      G NA+VA++ + GYNQEDS++M+R
Sbjct: 761  VLFYPQKPLVRTKAMT------YMHSNDLP-----AGHNAVVAISCYSGYNQEDSIIMSR 809

Query: 798  ASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVD--SLDDDGFPF 855
            +++ERG FRS   RS+KA    KE + KR + +   N  +   ++ R D   LD DG   
Sbjct: 810  SAVERGFFRSAFWRSFKA----KEERQKRDALETFENPNREVCRVKRADYSKLDTDGLIK 865

Query: 856  IGANLQSGDIVIGKY-----AD-----------SGADHSIKLKHTERGMVQKVVLSSNDD 899
             G  +  GD+V+GK      AD           +  D SI  + TE+G+V+KV+L+ N  
Sbjct: 866  PGMRVLGGDVVVGKTIPLPEADLDKLTTGNTKITKRDASITSRTTEKGVVEKVMLTMNSS 925

Query: 900  GKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPS 959
             + F+ V +R ++ P +GDKF S HGQKG  G    QE+ PF   G+VPD++INPHA PS
Sbjct: 926  DR-FAKVKIRTIKIPNIGDKFCSRHGQKGTNGIQFRQEDMPFNRDGVVPDLIINPHAIPS 984

Query: 960  RQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLY 1019
            R T   L+E   GK     G  +      YATPF +  VD   + LH  G  ++G E LY
Sbjct: 985  RMTVAHLIETLAGKVACYKGGEV------YATPFCSVVVDDFGKALHALGSQRYGNECLY 1038

Query: 1020 DGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEM 1079
            +G TG  +  LIF GPTFYQRL H+S DK+  R  GP+ PL RQP   R   GG++FGEM
Sbjct: 1039 NGHTGLPLDHLIFFGPTFYQRLKHLSGDKIHARPRGPLQPLVRQPTEGRAHEGGLRFGEM 1098

Query: 1080 ERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDS 1139
            ERDC++++GA+  L ERLF +SD Y +H+C  C  +            K+    C+ C++
Sbjct: 1099 ERDCMLSYGASQWLRERLFRVSDYYTVHVCNHCGTICV-------ADTKLNRYQCKGCEN 1151

Query: 1140 GDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
               I +  +PY  KLL QEL SM I  +  T
Sbjct: 1152 DTRISQVLMPYACKLLFQELMSMTILPRLGT 1182


>gi|401426102|ref|XP_003877535.1| DNA-directed RNA polymerase II subunit 2,putative [Leishmania
            mexicana MHOM/GT/2001/U1103]
 gi|322493781|emb|CBZ29070.1| DNA-directed RNA polymerase II subunit 2,putative [Leishmania
            mexicana MHOM/GT/2001/U1103]
          Length = 1185

 Score =  594 bits (1531), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 406/1231 (32%), Positives = 618/1231 (50%), Gaps = 130/1231 (10%)

Query: 5    DNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGE 64
            D+G  D   + D  ++       +   SFF E GLV  Q++SYN+F+   + K  +S   
Sbjct: 17   DDGIVDEHDVEDPNDDLDSEDIWEVISSFFREKGLVHQQLDSYNDFLMR-IPKMIESMAV 75

Query: 65   TIVEPG-YDPSKKGEGEWRYASMRFGQVTLDKPS-----FFAGNGGDEHDMFPRHARLQN 118
               +   YDP    E +     +    V +  PS     +FAG  G    +FP   RL++
Sbjct: 76   IPRQDDQYDPGVTMEEQRDQPRLVLQDVVIGNPSHQTQSYFAG--GSLPPLFPNECRLRD 133

Query: 119  MTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLC 178
            MTY ++ +V +  ++Y           T  + +++         N+ +GRIP+M+KS  C
Sbjct: 134  MTYDAQAQVTLGVELY------HPHADTPHDTFLR---------NVELGRIPIMLKSMRC 178

Query: 179  WMKGVEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKS- 230
             + G ++       +C  D GGYF+I G EKV +AQE+     ++  S   G     KS 
Sbjct: 179  NLSGKDEDELPRLNECPHDQGGYFVINGTEKVLIAQERQAANHVYTFSRQKGLLCEVKSI 238

Query: 231  -ENKRNRLIVRLVDM--------SKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDK 281
             E   N+     + M        S FE++     +  V  +   IP+++LF A+ + +DK
Sbjct: 239  VEGSLNKPRTLQIIMQYKNKGPGSGFENL-----MCRVAQMDETIPLFVLFRAMDMVADK 293

Query: 282  EIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLI--KGTTFPPGEST 339
            EI+  +    +D ++L +L  S+ DA     +      AL Y+ + +  +          
Sbjct: 294  EILQTVVPDLKDTAMLELLRGSMSDASTL--QIFTREEALGYIGRRLGKQDAMANLQREA 351

Query: 340  EECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGEL 395
            E  +   L P +       + K  ++GYMV  LL    GR +  +RD   +KR+++AG L
Sbjct: 352  ESLLMRDLLPHMGTDPSANRTKCLYMGYMVHKLLLVALGRHEETDRDFLGHKRIDVAGTL 411

Query: 396  LERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFK 455
            L  +L+  +A  RK M K LQ      R V      + + ++T+GL R  +TG +    K
Sbjct: 412  LTVQLQTFLAQVRKEMIKTLQDHAANPRGVFSFGRVIHSKLITDGLRRCLATGNFGD-LK 470

Query: 456  RTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGE 515
                 +G+   L R     +L +LRR +  +  + K    R  H + WG IC + TP+G 
Sbjct: 471  TGNIKTGVAQTLNRLTYSSSLSNLRRIQNPIAASSKATRPRNLHCTQWGYICPVETPEGG 530

Query: 516  NCGLVKNLGVTGLVS-----TSILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWI 570
            + GL+KN+ +  L+S       +++ +  ++       L D A   +    +VFV+G  I
Sbjct: 531  SIGLLKNVALMCLMSRGTDHAEVVQAVQARIDGFRTIGLEDTADVRVA---RVFVNGTMI 587

Query: 571  GVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN----- 625
            GV ++    + +LR +RR  EL  +V I RD    E+R+F DAGR LRPL V EN     
Sbjct: 588  GVDRNPERLLHDLRTRRRNGELSNEVSIVRDIRDREIRVFSDAGRCLRPLFVAENCHLKL 647

Query: 626  --------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKP 677
                    +   K+   K+ ++   L  G +EL+  EEE+    A      +   E +K 
Sbjct: 648  RKSGMRDLLVSEKAGGKKSISWSTALKKGYVELIDCEEEDSLLIA------MTPSEVEKN 701

Query: 678  IKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSH 737
              ++HCE+D S +LG+   IIP+ NH+ + R  YQS     QA+G   +N ++R+DT +H
Sbjct: 702  YYYSHCEMDPSMILGICASIIPYPNHNQSPRNTYQSAM-GKQAMGIYASNFNMRMDTTAH 760

Query: 738  QLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNR 797
             LFYPQ+PL RT          Y H++ LP      G NA+VA++ + GYNQEDS++M+R
Sbjct: 761  VLFYPQKPLVRTKAMT------YMHSNDLP-----AGHNAVVAISCYSGYNQEDSIIMSR 809

Query: 798  ASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVD--SLDDDGFPF 855
            +++ERG FRS   RS+KA    KE + KR + +   N  +   ++ R D   LD DG   
Sbjct: 810  SAVERGFFRSAFWRSFKA----KEERQKRDALETFENPDREVCRVKRADYSKLDTDGLIK 865

Query: 856  IGANLQSGDIVIGKY-----AD-----------SGADHSIKLKHTERGMVQKVVLSSNDD 899
             G  +  GD+V+GK      AD           +  D SI  + TE+G+V KV+L+ N++
Sbjct: 866  PGMRVLGGDVVVGKTIPLPEADLEKLTTGNTKITKRDASITSRATEKGVVDKVMLTMNNN 925

Query: 900  GKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPS 959
             + F+ V +R ++ P +GDKF S HGQKG  G    QE+ PF   GIVPD++INPHA PS
Sbjct: 926  DR-FTKVKIRTIKIPNIGDKFCSRHGQKGTNGIQFRQEDMPFNRDGIVPDLIINPHAIPS 984

Query: 960  RQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLY 1019
            R T   L+E   GK     G  +      YATPF +  VD   + LH     ++G E LY
Sbjct: 985  RMTVAHLIETLAGKVACYKGGEV------YATPFCSVVVDDFGKALHALRSQRYGNECLY 1038

Query: 1020 DGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEM 1079
            +G TG  +  LIF GPTFYQRL H+S DK+  R  GP+ PL RQP   R   GG++FGEM
Sbjct: 1039 NGHTGLPLDHLIFFGPTFYQRLKHLSGDKIHARPRGPLQPLVRQPTEGRAHEGGLRFGEM 1098

Query: 1080 ERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDS 1139
            ERDC++++GA+  L ERLF +SD Y +H+C  C  +            K+    C+ C++
Sbjct: 1099 ERDCMLSYGASQWLRERLFRVSDYYTVHVCNMCGTICV-------ADTKLNRYQCKGCEN 1151

Query: 1140 GDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
               I +  +PY  KLL QEL SM I  +  T
Sbjct: 1152 DTRISQVLMPYACKLLFQELMSMTILPRLGT 1182


>gi|307208700|gb|EFN85990.1| DNA-directed RNA polymerase II subunit RPB2 [Harpegnathos saltator]
          Length = 1123

 Score =  593 bits (1529), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 388/1146 (33%), Positives = 590/1146 (51%), Gaps = 118/1146 (10%)

Query: 86   MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
            ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +          T    K
Sbjct: 34   LKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLTYSAPLYVDI----------TKTIMK 82

Query: 146  TGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFIIK 199
             G      +E +  +     IG+IP+M++S  C + G+      E  +C  D GGYFII 
Sbjct: 83   DG------EEPIETQHQKTFIGKIPIMLRSKYCLLAGLSDRDLTELNECPLDPGGYFIIN 136

Query: 200  GAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR---------NRLIVRLVDMSKFEDI 250
            G+EKV +AQE++    ++V +      AYK+E +          + L + ++  S     
Sbjct: 137  GSEKVLIAQEKMATNTVYVFSMKDGKYAYKAEIRSCLEHSSRPTSTLWINMMAKSGASIK 196

Query: 251  KG--GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA 307
            K   G++++++  ++  EIPI ++F ALG  +D++I+  I +  +D  ++ ++  S+ +A
Sbjct: 197  KSAIGQRIVAIIPYVKQEIPIMVVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 256

Query: 308  -----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEECMNTYLFPSLHG 353
                  N    F   R A         +KY  ++++    P    ++ C           
Sbjct: 257  FVIQEQNVALNFIGTRGARAGVTKEKRIKYAREILQKEMLPHVGISDFC----------- 305

Query: 354  TKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAK 413
              +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL    +    +  K +  
Sbjct: 306  ETKKAYFLGYMVHRLLSASLGRRELDDRDHYGNKRLDLAGPLLAFLFRALFKNLMKEVRL 365

Query: 414  ALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPL 473
              Q+ +   +    +E  +   I+T+GL  + +TG W    K  +  +G+   L R    
Sbjct: 366  YAQKFIDRGKDFN-LELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFA 424

Query: 474  QTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-S 532
             TL  LRR    +   GK+   R  H + WG +C   TP+G   GLVKNL +   +S  S
Sbjct: 425  STLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGS 484

Query: 533  ILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL 592
               PI E L    ME L + A  ++    K+FV+G W+G+ +D    ++ LR+ RR+ ++
Sbjct: 485  QPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPDQLMATLRKLRRQMDI 544

Query: 593  -PTQVEIKRDELQSEVRIFMDAGRILRPLLVVE---------NMGKIKSLEGKNYTFQAL 642
              ++V + RD    E+RI+ DAGRI RPLL+VE         ++  +K  +  N  +Q L
Sbjct: 545  IVSEVSMIRDIRDREIRIYTDAGRISRPLLIVEGQNLLLKKRHIDMLKERDYNNDGWQEL 604

Query: 643  LDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFAN 702
            +  G++E + T EEE    A     L ++ E      +THCE+  + +LG+   IIPF +
Sbjct: 605  VGSGVVEYIDTLEEETVMIAMSPDDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPD 664

Query: 703  HDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGH 762
            H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T   +         
Sbjct: 665  HNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSME--------- 714

Query: 763  NHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEM 822
               L   EL  G N+IVA+  + GYNQEDS+++N +++ERG FRS   RSYK E ++K++
Sbjct: 715  --YLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYK-EAESKKI 771

Query: 823  QVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKY-----ADSGADH 877
              +    +          +    D LDDDG    G  +   D++IGK       D   D 
Sbjct: 772  GDQEEQFEKPSRLTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVIIGKTITLPETDDELDS 831

Query: 878  SIK----------LKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQK 927
            + K          L+++E G+V +V+L+ N +G  F  + +R VR P +GDKF+S HGQK
Sbjct: 832  TTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQK 891

Query: 928  GVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLK 987
            G  G    QE+ PF+ +G+ PDI+INPHA PSR T G L+E   GK   +  KG      
Sbjct: 892  GTCGIQYRQEDMPFSCEGLTPDIIINPHAIPSRMTIGHLIECIQGK--VSANKGEIGD-- 947

Query: 988  RYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSE 1046
              ATPF    +V  I+  L   G+   G E +Y+G TG  + + +F+GPT+YQRL HM +
Sbjct: 948  --ATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTYYQRLKHMVD 1005

Query: 1047 DKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQM 1106
            DK+  R  GPV  L RQP+  R R GG++FGEMERDC I+HGAA  L ERLF +SD Y++
Sbjct: 1006 DKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRI 1065

Query: 1107 HICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
            HIC  C    +AN+               C+ C +   I +  +PY AKLL QEL +M I
Sbjct: 1066 HICNFCGLIAIANLRNNTFE---------CKGCKNKTQISQIRLPYAAKLLFQELMAMNI 1116

Query: 1165 TLKFDT 1170
              +  T
Sbjct: 1117 APRLMT 1122


>gi|47208444|emb|CAF93098.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1217

 Score =  593 bits (1528), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 418/1273 (32%), Positives = 620/1273 (48%), Gaps = 195/1273 (15%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPSKKGEGEWRYASMRFGQ 90
            S+F+E GLV  Q++S++EFI+  +Q+   D+    +       S + E   RY  ++F Q
Sbjct: 5    SYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGEVEEPPRYL-LKFEQ 63

Query: 91   VTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
            + L KP+ +  +G     M P  ARL+N+TYS+ + V +          T    K G +Q
Sbjct: 64   IYLSKPTHWERDGAPS-PMMPNEARLRNLTYSAPLYVDI----------TKTIIKEGEDQ 112

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFIIKGAEKV 204
                  +  +     IG+IP+M++S  C + G+      E  +C  D GGYFII G+EKV
Sbjct: 113  ------IQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIINGSEKV 166

Query: 205  FVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVRLVDMSK----FEDIKGG 253
             +AQE++    ++V        AY SE       + R    + +  M++     +    G
Sbjct: 167  LIAQEKMATNTVYVFAKKDSKYAYTSECRSCLENSSRPTSTIWVSMMARGGQGVKKSAIG 226

Query: 254  EKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA----- 307
            ++++S   ++  E+PI I+F ALG  SD++I+  I +  +D  ++ ++  S+ +A     
Sbjct: 227  QRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQE 286

Query: 308  DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKA 358
             N    F   R A         +KY  ++++    P    ++ C             +KA
Sbjct: 287  QNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEMLPHVGVSDFC-----------ETKKA 335

Query: 359  RFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRD 418
             FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL    +    +  K +    Q+ 
Sbjct: 336  YFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQKF 395

Query: 419  LYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVD 478
            +   +    +E  +   I+++GL  + +TG W    K  +  +G+   L R     TL  
Sbjct: 396  IDRGKDFN-LELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLSH 454

Query: 479  LRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPI 537
            LRR    +   GK+   R  H + WG +C   TP+G   GLVKNL +   +S  S   PI
Sbjct: 455  LRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPI 514

Query: 538  FEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKE-LPTQV 596
             E L    ME L + +  ++    K+FV+G W+G+ KD    ++ LR+ RR+ + + ++V
Sbjct: 515  LEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEV 574

Query: 597  EIKRDELQSEVRIFMDAGRILRPLLVVE---------NMGKIKSLEGKNYTFQALLDHGI 647
             + RD  + E+RI+ DAGRI RPLL+VE         ++ ++K  E  NY++Q L+  G+
Sbjct: 575  SMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASGV 634

Query: 648  IELVGTEEEEDCCTAWGIKYLLKDIEDKKPI---KFTHCELDMSFLLGLSCGIIPFANHD 704
            +E + T EEE    A        D+++K       +THCE+  S +LG+   IIPF +H+
Sbjct: 635  VEYIDTLEEETVMLAMTP----DDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHN 690

Query: 705  HARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNH 764
             + R  YQS     QA+G   TN  +R+DTL+H L+YPQ+PL  T   +           
Sbjct: 691  QSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSME----------- 738

Query: 765  ILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAE-----VDN 819
             L   EL  G N+IVA+  + GYNQEDS++MNR++++RG FRS   RSYK +      D 
Sbjct: 739  YLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQ 798

Query: 820  KEMQVK--RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD----- 872
            +E+  K  R +   M        +    + LDDDG    G  +   D++IGK        
Sbjct: 799  EEIFEKPTRETCQGM--------RHAIYEKLDDDGLIAPGVRVSGEDVIIGKTVTLPENE 850

Query: 873  ----------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVV---------------- 906
                      +  D S  L+ +E G+V +V+++ N +G  F  +                
Sbjct: 851  DELDGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVSRRHLHLTRLRSSP 910

Query: 907  --------------SLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVI 952
                           +R VR P +GDKF+S HGQKG  G    QE+ PFT +GI PDI+I
Sbjct: 911  GFKPSRMLSHSCSLQVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIII 970

Query: 953  NPHAFPSRQTPGQLLEAALGKG-------------------IAALGKGICSGLKRYATPF 993
            NPHA PSR T G L+E   GK                    + A   G     + +   F
Sbjct: 971  NPHAIPSRMTVGHLIECLQGKVWTSTSTLHLPELHCSVPLILVAANTGWAVLYQLFPVSF 1030

Query: 994  -----------ATPSVDAITEQ-----LHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTF 1037
                       ATP  DA+  Q     L   G+   G E LY+G TG  + S IFIGPT+
Sbjct: 1031 QVSANKGEIGDATPFNDAVNVQKVSNLLSEYGYHLRGNEVLYNGFTGRKLTSQIFIGPTY 1090

Query: 1038 YQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERL 1097
            YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC IAHGAA  L ERL
Sbjct: 1091 YQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLKERL 1150

Query: 1098 FTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQ 1157
            F  SD YQ+H+C  C  +A           +     CR C +   I    +PY  KLL Q
Sbjct: 1151 FEASDPYQVHVCNLCGLMAI-------ANTRTHTYECRGCRNKTQISLVRMPYACKLLFQ 1203

Query: 1158 ELFSMGITLKFDT 1170
            EL SM I  +  T
Sbjct: 1204 ELMSMSIAPRMMT 1216


>gi|146094444|ref|XP_001467277.1| putative DNA-directed RNA polymerase II subunit 2 [Leishmania
            infantum JPCM5]
 gi|398019887|ref|XP_003863107.1| DNA-directed RNA polymerase II subunit 2, putative [Leishmania
            donovani]
 gi|134071642|emb|CAM70332.1| putative DNA-directed RNA polymerase II subunit 2 [Leishmania
            infantum JPCM5]
 gi|322501339|emb|CBZ36417.1| DNA-directed RNA polymerase II subunit 2, putative [Leishmania
            donovani]
          Length = 1181

 Score =  592 bits (1526), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 408/1231 (33%), Positives = 618/1231 (50%), Gaps = 134/1231 (10%)

Query: 5    DNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGE 64
            D+G  D     DL  E +     +   SFF E GLV  Q++SYN+F+   + K  +S   
Sbjct: 17   DDGIDDENPNDDLDSEDIW----EVISSFFREKGLVHQQLDSYNDFLMR-IPKMIESMAV 71

Query: 65   TIVEPG-YDPSKKGEGEWRYASMRFGQVTLDKPS-----FFAGNGGDEHDMFPRHARLQN 118
               +   YDP    E +     +    V +  PS     +FAG  G    +FP   RL++
Sbjct: 72   IPRQDDQYDPGVTMEEQRDQPRLVLQDVVIGNPSHQTHSYFAG--GPLPPLFPNECRLRD 129

Query: 119  MTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLC 178
            MTY ++ +V +  ++Y           T  + +++         N+ +GRIP+M+KS  C
Sbjct: 130  MTYDAQAQVTLGVELY------HPHADTPHDTFLR---------NVELGRIPIMLKSMRC 174

Query: 179  WMKGVEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKS- 230
             + G ++       +C  D GGYF+I G EKV +AQE+     ++  S   G     KS 
Sbjct: 175  NLSGKDEDELPRLNECPHDQGGYFVINGTEKVLIAQERQAANHVYTFSRQKGLLCEVKSI 234

Query: 231  -ENKRNRLIVRLVDM--------SKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDK 281
             E   N+     + M        S FE++     +  V  +   IP+++LF A+ + +DK
Sbjct: 235  VEGSLNKPRTLQIIMQYKNKGPGSGFENL-----MCRVAQMDETIPLFVLFRAMDMVADK 289

Query: 282  EIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLI--KGTTFPPGEST 339
            EI+  +    +D ++L +L  S+ DA     +      AL Y+ + +  +          
Sbjct: 290  EILQTVVPDLKDTAMLELLRGSMSDASTL--QIFTREEALGYIGRRLGKQDAMANLQREA 347

Query: 340  EECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGEL 395
            E  +   L P +       + K  ++GYMV  LL    GR +  +RD   +KR+++AG L
Sbjct: 348  ESLLMRDLLPHMGTDPSANRTKCLYMGYMVHKLLLVALGRHEETDRDFLGHKRIDVAGTL 407

Query: 396  LERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFK 455
            L  +L+  +A  RK M K LQ      R V      + + ++T+GL R  +TG +    K
Sbjct: 408  LTVQLQTFLAQVRKEMIKTLQDHAANPRGVFSFGRVIHSKLITDGLRRCLATGNFGD-LK 466

Query: 456  RTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGE 515
                 +G+   L R     +L +LRR +  +  + K    R  H + WG IC + TP+G 
Sbjct: 467  TGNIKTGVAQTLNRLTYSSSLSNLRRIQNPIAASSKATRPRNLHCTQWGYICPVETPEGG 526

Query: 516  NCGLVKNLGVTGLVS-----TSILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWI 570
            + GL+KN+ +  L+S       +++ +  ++       L D A   +    +VFV+G  I
Sbjct: 527  SIGLLKNVALMCLMSRGTDHAEVVQAVQARIDGFRTIGLEDTADVRVA---RVFVNGTMI 583

Query: 571  GVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN----- 625
            GV ++    + +LR +RR  EL  +V I RD    E+R+F DAGR LRPL V EN     
Sbjct: 584  GVDRNPERLLHDLRTRRRNGELSNEVSIVRDIRDREIRVFSDAGRCLRPLFVAENCHLKL 643

Query: 626  --------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKP 677
                    +   K+   K+ ++   L  G +EL+  EEE+    A      +   E +K 
Sbjct: 644  RKSGMRNLLVSEKAGGKKSISWNTALKKGYVELIDCEEEDSLLIA------MTPNEVEKN 697

Query: 678  IKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSH 737
              ++HCE+D S +LG+   IIP+ NH+ + R  YQS     QA+G   +N ++R+DT +H
Sbjct: 698  YYYSHCEMDPSMILGICASIIPYPNHNQSPRNTYQSAM-GKQAMGIYASNFNMRMDTTAH 756

Query: 738  QLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNR 797
             LFYPQ+PL RT          Y H++ LP      G NA+VA++ + GYNQEDS++M+R
Sbjct: 757  VLFYPQKPLVRTKAMT------YMHSNDLP-----AGHNAVVAISCYSGYNQEDSIIMSR 805

Query: 798  ASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVD--SLDDDGFPF 855
            +++ERG FRS   RS+KA    KE + KR + +   N  +   ++ R D   LD DG   
Sbjct: 806  SAVERGFFRSAFWRSFKA----KEERQKRDALETFENPDRELCRVKRADYSKLDTDGLIK 861

Query: 856  IGANLQSGDIVIGKY-----AD-----------SGADHSIKLKHTERGMVQKVVLSSNDD 899
             G  +  GD+V+GK      AD           +  D SI  + TE+G+V KV+L+ N++
Sbjct: 862  PGMRVLGGDVVVGKTIPLPEADLEKLTTGNTKITKRDASITSRTTEKGVVDKVMLTMNNN 921

Query: 900  GKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPS 959
             + F+ V +R ++ P +GDKF S HGQKG  G    QE+ PF   GIVPD++INPHA PS
Sbjct: 922  DR-FTKVKIRTIKIPNIGDKFCSRHGQKGTNGIQFRQEDMPFNRDGIVPDLIINPHAIPS 980

Query: 960  RQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLY 1019
            R T   L+E   GK     G  +      YATPF +  VD   + LH     ++G E LY
Sbjct: 981  RMTVAHLIETLAGKVACYKGGEV------YATPFCSVVVDDFGKALHALRSQRYGNECLY 1034

Query: 1020 DGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEM 1079
            +G TG  +  LIF GPTFYQRL H+S DK+  R  GP+ PL RQP   R   GG++FGEM
Sbjct: 1035 NGHTGLPLDHLIFFGPTFYQRLKHLSGDKIHARPRGPLQPLVRQPTEGRAHEGGLRFGEM 1094

Query: 1080 ERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDS 1139
            ERDC++++GA+  L ERLF +SD Y +H+C  C  +            K+    C+ C++
Sbjct: 1095 ERDCMLSYGASQWLRERLFRVSDYYTVHVCNMCGTIC-------VADTKLNRYQCKGCEN 1147

Query: 1140 GDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
               I +  +PY  KLL QEL SM I  +  T
Sbjct: 1148 DTRISQVLMPYACKLLFQELMSMTILPRLGT 1178


>gi|313227690|emb|CBY22838.1| unnamed protein product [Oikopleura dioica]
          Length = 1187

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 398/1204 (33%), Positives = 608/1204 (50%), Gaps = 122/1204 (10%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFG--ETIVEPGYDPSKKGEGEWRY 83
            C     ++F+E GLV  Q+ S++EFI   +Q+  +     E   EP Y+ + + E   +Y
Sbjct: 25   CWTIITAYFDEKGLVRQQLESFDEFITMSVQRIVEESPVIELQSEPNYN-AGEPEEPTKY 83

Query: 84   ASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDK 143
              ++F Q+ L KP+ +    G  + + P  ARL+N+TY + + V +      +  + SD 
Sbjct: 84   -QIKFEQIYLSKPTHWEVGTG-PNPLMPNEARLRNLTYCAPLYVDI-----NRTTIRSDD 136

Query: 144  FKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFI 197
             +   E++            I IG+IP+M++S+ C + G+      E  +C  D GGYF+
Sbjct: 137  PRPHEEKH----------EKIFIGQIPIMLRSEYCLLSGLSDRDLTELNECPLDPGGYFV 186

Query: 198  IKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR---------NRLIVRLVDMSKFE 248
            I G+EKV +AQE++    ++V           +E +          + + + L+  S   
Sbjct: 187  INGSEKVVIAQEKMANNTVYVFEKKDSKYELTAECRSCLENSSRPTSTIWINLLARSGGT 246

Query: 249  DIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASI 304
             +K    G ++ ++  ++  + PI I+F ALG  SD++I+  I +  +D  ++ ++  SI
Sbjct: 247  GVKKSAIGRRIAAILPYVKQDTPIIIVFRALGFVSDRDILEHIVYDFDDPDMMEMVKPSI 306

Query: 305  HDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEECMNTYLFPS 350
             +A     +    +F   R A         +KY  ++++    P    +E C        
Sbjct: 307  DEAFVIQEEAVALDFIGKRGARPGVTREKRMKYAKEILQKELLPHVGISEYC-------- 358

Query: 351  LHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKR 410
                 +KA FLGYMV  +LQA  GRR  D+RD + NKR++LAG LL    +       K 
Sbjct: 359  ---ETKKAYFLGYMVNRILQAGLGRRGEDDRDHYGNKRMDLAGPLLAFLFRSLFKKLTKD 415

Query: 411  MAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRA 470
               A Q+++   + +  +   +   I+T+GL  + +TG W    K ++   G+   L R 
Sbjct: 416  ARIAAQKEIEKGKPMN-VLTAIKTKIITDGLKYSLATGNWGDQQKASQCRPGVSQVLNRL 474

Query: 471  NPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVS 530
                +L  LRR    V   GK+   R  H + WG +C   TP+G   GLVKNL +   +S
Sbjct: 475  TYASSLSHLRRLNSPVGRDGKLAKPRQLHSTQWGMVCPAETPEGHAVGLVKNLALMSYIS 534

Query: 531  T-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRR 589
              S   PI E L    ME L +    S+    K+FV+G W+G+ +D    +  LR+ RR+
Sbjct: 535  VGSQPSPILEFLEEWSMENLEEITPNSISDATKIFVNGCWVGIHRDPEQLMGTLRKLRRQ 594

Query: 590  KEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKSLEGKNYTF 639
             ++  ++V + RD    E+RI+ DAGRI RPLL+VE+         +  +K  E  NY++
Sbjct: 595  MDIIVSEVSMVRDIRNREIRIYTDAGRICRPLLIVEDQRLLLKKDHLAMLKDPEYSNYSW 654

Query: 640  QALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIP 699
              L+  G++E + T EEE    A     + K  E      +THCE+  + +LG+   I+P
Sbjct: 655  TELIKAGVVEYIDTLEEETIMCAMTPDEVKKTDEMAYCRSYTHCEIHPAMILGVCASIVP 714

Query: 700  FANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPG 759
            F +H+ + R  YQS     QA+G   TN  IR+DT+ +  FYPQ+PL       C+ +  
Sbjct: 715  FPDHNQSPRNTYQS-AMGKQAVGVFVTNFQIRMDTMGNICFYPQKPL-------CVTR-- 764

Query: 760  YGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDN 819
                  L   EL  G N IVA++ + GYNQEDSL+MN ASL+RG  RS + R Y+ + +N
Sbjct: 765  --SMEYLRFSELPAGINTIVALSCYTGYNQEDSLIMNMASLDRGFHRSIYYRGYR-DTEN 821

Query: 820  KEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA-------- 871
            K++     + +          +    D L+DDG    G  +   D++IGK          
Sbjct: 822  KKILDPEETFEKPDRATTQGMRHAMYDKLEDDGLIAPGTRISGDDVMIGKTIALQDGDDA 881

Query: 872  -DSGA------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMH 924
             D  A      D S+  K TE+G++  V+++ N+DG  F  + LR VR P +GDKF+S H
Sbjct: 882  LDPTAKKYTKKDASLFAKPTEKGIIDSVMVTINEDGYKFVKIRLRSVRIPEVGDKFASRH 941

Query: 925  GQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICS 984
            GQKG  G +   E+  FT  G+ PD+++NPHA PSR T G L E    K       G   
Sbjct: 942  GQKGTNGIMLRCEDMLFTPDGMQPDLIVNPHAIPSRMTIGHLFECLTSK------VGAIK 995

Query: 985  GLKRYATPF-ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIH 1043
            G    ATPF  + +V  +++ LH   + + G E LY G TG  + + +F GPT+YQRL H
Sbjct: 996  GEIGDATPFNPSVTVQKVSDILHEYEYQQRGNEVLYSGFTGRKMNTQVFFGPTYYQRLKH 1055

Query: 1044 MSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDS 1103
            M  DK+  R  GPV  L RQP+  R R GG++FGEMERDC IAHGA+  L ERLF +SD 
Sbjct: 1056 MVNDKIHSRARGPVQLLNRQPMEGRSRDGGLRFGEMERDCQIAHGASQFLKERLFEVSDP 1115

Query: 1104 YQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFS 1161
            Y++H+C  C    VAN+               CR C +  +I +  +PY  KLL QEL S
Sbjct: 1116 YRVHVCNLCGLICVANLTSNSFE---------CRSCSNKTNISQVRMPYACKLLFQELMS 1166

Query: 1162 MGIT 1165
            M I 
Sbjct: 1167 MQIA 1170


>gi|427798029|gb|JAA64466.1| Putative rna polymerase i second largest subunit, partial
            [Rhipicephalus pulchellus]
          Length = 1149

 Score =  591 bits (1524), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 398/1193 (33%), Positives = 616/1193 (51%), Gaps = 146/1193 (12%)

Query: 2    DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDS 61
            +++++GF +  S  ++  +  +  C     ++F+E GLV  Q++S++EFI+  +Q+  + 
Sbjct: 3    EAEEDGFGEDESE-EITPDLWQEACWIVISAYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 62   FGETIVEP-GYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
              +  ++      S + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+T
Sbjct: 62   TPQIDLQAEAQHTSGEIENPPRYL-LKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLT 119

Query: 121  YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
            YS+ + V +   V  +                 +E +  +     IG+IP+M++S  C +
Sbjct: 120  YSAPLYVDITKTVLKEN----------------EEAVETQHQKTFIGKIPIMLRSTYCLL 163

Query: 181  KGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR 234
              +      E  +C  D GGYFII G+EKV +AQE++    ++V        AYK+E + 
Sbjct: 164  NNLTDRDLSELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFQMKDSKYAYKAECRS 223

Query: 235  ---------NRLIVRLVDMSKFEDIKG--GEKVLSVY-FLSTEIPIWILFFALGVSSDKE 282
                     + L V ++        K   G++++++  ++  EIPI I+F ALG  +D++
Sbjct: 224  CLEHSSRPTSTLWVNMLARGGQGVRKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283

Query: 283  IVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLI 328
            I+  I +  ED  ++ ++  S+ +A      N    F   R A         +KY  +++
Sbjct: 284  ILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGARPGVTKEKRIKYSKEIL 343

Query: 329  KGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKR 388
            +    P    ++ C             +KA +LGYMV  LL A  GRR+ D+RD + NKR
Sbjct: 344  QKEMLPHVGVSDFC-----------ETKKAYYLGYMVHRLLLAALGRRELDDRDHYGNKR 392

Query: 389  LELAGELLERELKVHIAHARKRMAKALQRD--LYGDRTV-RPIEYYLDASI-----LTNG 440
            L+LAG L+        A   + + + L ++  +Y  + + R  ++ L+ +I     +T+G
Sbjct: 393  LDLAGPLM--------AFLFRGLFRNLTKEVRMYAQKFIDRGKDFNLELAIKTXXXITDG 444

Query: 441  LSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHP 500
            L  + +TG W    K  +  +G+   L R     TL  LRR    +   GK+   R  H 
Sbjct: 445  LRYSLATGNWGDQKKAHQARAGVSQVLNRLTYASTLSHLRRVNSPIGRDGKLAKPRQLHN 504

Query: 501  SHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGG 559
            + WG IC   TP+G   GLVKNL +   +S  S   PI E L    ME L + A  ++  
Sbjct: 505  TLWGMICPAETPEGHAVGLVKNLALMSYISVGSQPSPILEFLEEWSMENLEEIAPSAIAE 564

Query: 560  KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILR 618
              K+FV+G W+G+ +D    ++ LR+ RR+ ++  ++V + RD    E+RI+ DAGRI R
Sbjct: 565  ATKIFVNGCWVGIHRDPDQLMNTLRKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRICR 624

Query: 619  PLLVVEN---------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLL 669
            PLL+VE+         +  +K  E  NY++Q L+  G++E + T EEE       +    
Sbjct: 625  PLLIVEDQKLLLKRRHIDNLKDREYNNYSWQDLVASGVVEYIDTLEEETVM----LSMTP 680

Query: 670  KDIEDKKPI---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTT 726
             D++DK       +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   T
Sbjct: 681  DDLQDKGLAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGIYIT 739

Query: 727  NPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLG 786
            N  +R+DTL+H L+YP +PL  T   +            L   EL  G N+IVA+  + G
Sbjct: 740  NFHVRMDTLAHVLYYPHKPLTTTRSME-----------YLRFRELPAGINSIVAIMSYTG 788

Query: 787  YNQEDSLVMNRASLERGMFRSEHIRSYK----AEVDNKEMQVK---RRSSDDMVNFGKIQ 839
            YNQEDS+++N ++++RG FRS   RSYK      V ++E Q +   R +   M N     
Sbjct: 789  YNQEDSIIVNASAVDRGFFRSVFYRSYKDSECKRVGDQEEQFEKPTRETCQGMRN----- 843

Query: 840  SKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD---------------SGADHSIKLKHT 884
                  D LDDDG    G  +   D++IGK                  +  D S  L+++
Sbjct: 844  ---AIYDKLDDDGIIAPGTRVSGDDVIIGKTITLPENDDDLESTNRRFTKRDASTFLRNS 900

Query: 885  ERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQ 944
            E G+V +V+L+ N +G  F  + +R VR P +GDKF+S HGQKG  G    QE+ PFT +
Sbjct: 901  ETGIVDQVMLTVNAEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGITYRQEDMPFTAE 960

Query: 945  GIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFA-TPSVDAITE 1003
            G+ PDI+INPHA PSR T G L+E   GK   +  KG        ATPF  + +V  I+ 
Sbjct: 961  GLTPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGEIGD----ATPFNDSVNVQKISN 1014

Query: 1004 QLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQ 1063
             L   G+   G E +++G TG  V + IF+GPT+YQRL HM +DK+  R  GPV  L RQ
Sbjct: 1015 LLQEYGYHLRGNEVMFNGHTGRKVNAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQ 1074

Query: 1064 PVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVA 1116
            P+  R R GG++FGEMERDC I+HGAA  L ERLF +SD Y+ HIC  C  +A
Sbjct: 1075 PMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRAHICNLCGLLA 1127


>gi|402869721|ref|XP_003898896.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
            [Papio anubis]
          Length = 1083

 Score =  591 bits (1523), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 395/1127 (35%), Positives = 574/1127 (50%), Gaps = 142/1127 (12%)

Query: 112  RHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPV 171
            +HARL+N+TYS+ + V +          T    K G EQ      L  +     IG+IP+
Sbjct: 20   KHARLRNLTYSAPLYVDI----------TKTVIKEGEEQ------LQTQHQKTFIGKIPI 63

Query: 172  MVKSDLCWMKGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWT 225
            M++S  C + G+      E  +C  D GGYFII G+EKV +AQE++    ++V       
Sbjct: 64   MLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSK 123

Query: 226  VAYKSENKRN-------------RLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILF 272
             AY  E +                ++ R    +K   I G   V ++ ++  E+PI I+F
Sbjct: 124  YAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAI-GQRIVATLPYIKQEVPIIIVF 182

Query: 273  FALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA------- 320
             ALG  SD++I+  I +  ED  ++ ++  S+ +A      N    F   R A       
Sbjct: 183  RALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKE 242

Query: 321  --LKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKC 378
              +KY  ++++    P    ++ C             +KA FLGYMV  LL A  GRR+ 
Sbjct: 243  KRIKYAKEVLQKEMLPHVGVSDFC-----------ETKKAYFLGYMVHRLLLAALGRREL 291

Query: 379  DNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRD--LYGDRTVR-----PIEYY 431
            D+RD + NKRL+LAG LL        A   + M K L ++  +Y  + +       +E  
Sbjct: 292  DDRDHYGNKRLDLAGPLL--------AFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELA 343

Query: 432  LDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGK 491
            +   I+++GL  + +TG W    K  +  +G+   L R     TL  LRR    +   GK
Sbjct: 344  IKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGK 403

Query: 492  VGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLA 550
            +   R  H + WG +C   TP+G   GLVKNL +   +S  S   PI E L    ME L 
Sbjct: 404  LAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 463

Query: 551  DDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRI 609
            + +  ++    K+FV+G W+G+ KD    ++ LR+ RR+ ++  ++V + RD  + E+RI
Sbjct: 464  EISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRI 523

Query: 610  FMDAGRILRPLLVVE---------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCC 660
            + DAGRI RPLL+VE         ++ ++K  E  NY++Q L+  G++E + T EEE   
Sbjct: 524  YTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVM 583

Query: 661  TAWGIKYLLKDIEDKKPI---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHS 717
             A        D+++K+      +THCE+  S +LG+   IIPF +H+ + R  YQS    
Sbjct: 584  LAM----TPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMG 638

Query: 718  SQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNA 777
             QA+G   TN  +R+DTL+H L+YPQ+PL  T   +            L   EL  G N+
Sbjct: 639  KQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSME-----------YLRFRELPAGINS 687

Query: 778  IVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNK---EMQVKRRSSDDMVN 834
            IVA+  + GYNQEDS++MNR++++RG FRS   RSYK +   K   + +V  + + +   
Sbjct: 688  IVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQ 747

Query: 835  FGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD---------------SGADHSI 879
                  +    D LDDDG    G  +   D++IGK                  +  D S 
Sbjct: 748  ----GMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCST 803

Query: 880  KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENF 939
             L+ +E G+V +V+++ N +G  F  + +R VR P +GDKF+S HGQKG  G    QE+ 
Sbjct: 804  FLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDM 863

Query: 940  PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SV 998
            PFT +GI PDI+INPHA PSR T G L+E   GK   +  KG        ATPF    +V
Sbjct: 864  PFTCEGITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGEIGD----ATPFNDAVNV 917

Query: 999  DAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVH 1058
              I+  L   G+   G E LY+G TG  + S IFIGPT+YQRL HM +DK+  R  GP+ 
Sbjct: 918  QKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQ 977

Query: 1059 PLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANV 1118
             L RQP+  R R GG++FGEMERDC IAHGAA  L ERLF  SD YQ+H+C  C  +A  
Sbjct: 978  ILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAI- 1036

Query: 1119 IQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
                     +     CR C +   I    +PY  KLL QEL SM I 
Sbjct: 1037 ------ANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIA 1077


>gi|449016392|dbj|BAM79794.1| RNA polymerase II second largest subunit [Cyanidioschyzon merolae
            strain 10D]
          Length = 1184

 Score =  590 bits (1522), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 394/1206 (32%), Positives = 606/1206 (50%), Gaps = 123/1206 (10%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIV--EPGYDPSKKGEGEWRYASMRFG 89
            + F E GLV  Q++S+NEFI N  Q   D   + ++  +P + P K+   E     + FG
Sbjct: 26   AHFREKGLVKQQLDSFNEFIGNACQTIVDETPDIVLRPQPQHVPGKRAPPEGTRTIISFG 85

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
            Q++  KP+F   +G     +FP  ARL+N++YSS + V+V     T+  +  D       
Sbjct: 86   QLSAGKPTFTEVDG-TPTVLFPHEARLRNLSYSSPLYVEV-----TRIDIEIDPATKEER 139

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEK 203
            ++           N+ +GR+P+M+ SD C + G+ +      G+C +D GGYFII G+EK
Sbjct: 140  EF------RHPARNLYLGRVPMMLHSDFCHLNGLTEYQLQNIGECPYDQGGYFIINGSEK 193

Query: 204  VFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIK---GGEK----- 255
              +AQE++    ++V      T  Y    +   ++ R    ++   +K   GG K     
Sbjct: 194  ALIAQERMGNNAVYVFKRAS-TAPYSHVAECRSVLDRGNKPARTTQVKITRGGVKGQSGQ 252

Query: 256  --VLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFAS------IHDA 307
              ++S+ ++  +IP+ ++F ALG+ SD+EI+  + +  +D  +  +L  S      I D 
Sbjct: 253  CIMVSLPYIRADIPLAVVFRALGLESDREIMERVIYDTDDEEMQTLLMPSLDMGSVITDQ 312

Query: 308  DNKCDEFRKGRNALKYV-DKLIKGTTFPPGESTEECMNTYLFPSL---HGTKQKARFLGY 363
            +   D   K  N++    D+ I+           E +     P +        KA FLGY
Sbjct: 313  NLALDFIGKRGNSVGATRDRRIR--------YAREVLQLEFLPHIGIGAYEPAKAWFLGY 364

Query: 364  MVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDR 423
            M   LL    GRR+ D+RD +  KRL+LAG LL    +       K     LQ  L   +
Sbjct: 365  MTHQLLATVLGRREEDDRDHYGLKRLDLAGPLLTGLFRQLFQKVVKDARSILQHQLDMGK 424

Query: 424  TVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTR 483
             +  I   +    +T+ L  A +TG W    K   R +G+   L R     +L  LRR  
Sbjct: 425  ELN-IALAVKGRTITDNLKYAIATGNWRADRKAAVR-TGVSQVLNRLTYAASLSHLRRLN 482

Query: 484  QQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLF 542
              +   GK+   R  H + WG IC   TP+G++CGLVKNL +   +S  + +  I E L+
Sbjct: 483  SPIGREGKLAKPRQLHNTQWGMICPAETPEGQSCGLVKNLALMAYISVGTPVADILEMLY 542

Query: 543  NSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
            N  ME L +  +  +  + KVF++G W+G+       V+ LR  RR  E+  +V I  D 
Sbjct: 543  NFEMEPLYEVTAERIKRQTKVFLNGSWVGIHPRPEELVTALRVLRRSGEIADEVSIVFDV 602

Query: 603  LQSEVRIFMDAGRILRPLLVV-----------ENMGKIKSLEGKNYTFQALLDHGIIELV 651
               E+RI  DAGR+ RPL +V           +++  ++  E   YTF  L+  G++E +
Sbjct: 603  SHGELRIGTDAGRVCRPLFIVDTETNLLRIRKQHIDLLRDYETTGYTFSRLVREGLVEYL 662

Query: 652  GTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLY 711
               EEE    A   ++L    +      +TH E+  S + G+   IIPF +H+ + R  Y
Sbjct: 663  DVNEEETVMIAMDQEHLATSGDHAT---YTHMEIHPSMIFGVCASIIPFPDHNQSPRNTY 719

Query: 712  QSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPEL 771
            QS     QA+G   TN ++R+DT++H L+YPQ+PL  T + + L          LP    
Sbjct: 720  QS-AMGKQAMGMYLTNYNLRMDTMAHVLYYPQKPLVTTRVMEHL------QFRTLP---- 768

Query: 772  YNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNK--EMQVKRRSS 829
              G NA+VA+  + GYNQEDSL+M++A+++RG+FRS + +++K E   K    Q      
Sbjct: 769  -AGINAVVAIACYSGYNQEDSLIMSQAAVDRGLFRSVYYKTFKEEEQKKLFGQQETISKP 827

Query: 830  DDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA-------------- 875
            D  V  G  ++       L+ DG   +G  ++ GD+++GK A  GA              
Sbjct: 828  DPAVTLGMKEAHA--YSKLESDGLIGVGERVRGGDVLVGKTAPLGASRAAVDAAEQETAS 885

Query: 876  ------------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSM 923
                        D S+ +K TERG+  KV++ + + G     V +R    P +GDKF+S 
Sbjct: 886  GMAALSGMRTRKDCSLVMKRTERGVTDKVLICTGEAGTRMVKVRVRTELIPQVGDKFASR 945

Query: 924  HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGIC 983
            HGQKG +G    +E+ PF + GI PDI++NPHA PSR T   L+EA LGK + AL     
Sbjct: 946  HGQKGTMGLCMPEEDLPFNVDGIRPDIIMNPHAVPSRMTIAHLIEALLGK-VCAL----- 999

Query: 984  SGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIH 1043
            SG++  AT F   +VDAI  +L R G+   G E L++G+TG  + + IF+G  +YQRL H
Sbjct: 1000 SGVEGDATAFTPVTVDAIGRELVRHGYDPRGWELLFNGQTGRPMNAAIFMGVNYYQRLRH 1059

Query: 1044 MSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDS 1103
            +   K+  R  G V  LTRQPV  + R GG++ GEME+D  +A+GA+A L ER+  +SD 
Sbjct: 1060 VVYQKLGARARGAVQVLTRQPVEGKSRGGGLRIGEMEKDVFVAYGASAVLKERMCDVSDK 1119

Query: 1104 YQMHICRKCKNVANVIQRVVGGGRKVRGPY-CRICDSGDDIVKANVPYGAKLLCQELFSM 1162
            Y++H+C +C  +A    R        R  + CR C +   I    +PY  KLL QEL SM
Sbjct: 1120 YRVHVCERCGLIAIADLR--------RSIFECRGCKNKTRIAAVEIPYACKLLFQELMSM 1171

Query: 1163 GITLKF 1168
             I  + 
Sbjct: 1172 AIAPRM 1177


>gi|389594282|ref|XP_001685000.2| putative DNA-directed RNA polymerase II subunit 2 [Leishmania major
            strain Friedlin]
 gi|321399803|emb|CAJ08180.2| putative DNA-directed RNA polymerase II subunit 2 [Leishmania major
            strain Friedlin]
          Length = 1185

 Score =  590 bits (1522), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 401/1204 (33%), Positives = 609/1204 (50%), Gaps = 130/1204 (10%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPG-YDPSKKGEGEWRYASMRFGQ 90
            SFF E GLV  Q++SYN+F+   + K  +S      +   YDP    E +     +    
Sbjct: 44   SFFREKGLVHQQLDSYNDFLMR-IPKMIESMAVIPRQDDQYDPGVTMEEQRDQPRLVLQD 102

Query: 91   VTLDKPS-----FFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
            V +  PS     +F G  G    +FP   RL++MTY ++ +V +  ++Y           
Sbjct: 103  VVIGNPSHQTHSYFTG--GPLPPLFPNECRLRDMTYDAQAQVTLGVELY------HPHAD 154

Query: 146  TGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIK 199
            T  + +++         N+ +GRIP+M+KS  C + G ++       +C  D GGYF+I 
Sbjct: 155  TPHDTFLR---------NVELGRIPIMLKSMRCNLSGKDEDELPRLNECPHDQGGYFVIN 205

Query: 200  GAEKVFVAQEQICLKRLWV-SNSMGWTVAYKS--ENKRNRLIVRLVDM--------SKFE 248
            G EKV +AQE+     ++  S   G     KS  E   N+     + M        S FE
Sbjct: 206  GTEKVLIAQERQAANHVYTFSRQKGLLCEVKSIVEGSLNKPRTLQIIMQYRNKGPGSGFE 265

Query: 249  DIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDAD 308
            ++     +  V  +   IP+++LF A+ + +DKEI+  +    +D ++L +L  S+ DA 
Sbjct: 266  NL-----MCRVAQMDETIPLFVLFRAMDMVADKEILQTVVPDLKDTAMLELLRGSMSDAS 320

Query: 309  NKCDEFRKGRNALKYVDKLI--KGTTFPPGESTEECMNTYLFPSL----HGTKQKARFLG 362
                +      AL Y+ + +  +          E  +   L P +       + K  ++G
Sbjct: 321  TL--QIFTREEALGYIGRRLGKQDAMANLQREAESLLMRDLLPHMGTDPSANRTKCLYMG 378

Query: 363  YMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGD 422
            YMV  LL    GR +  +RD   +KR+++AG LL  +L+  +A  RK M K LQ      
Sbjct: 379  YMVHKLLLVALGRHEETDRDFLGHKRIDVAGTLLTVQLQTFLAQVRKEMIKTLQDHAANP 438

Query: 423  RTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
            R V      + + ++T+GL R  +TG +    K     +G+   L R     +L +LRR 
Sbjct: 439  RGVFSFGRVIHSKLITDGLRRCLATGNFGD-LKTGNIKTGVAQTLNRLTYSSSLSNLRRI 497

Query: 483  RQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVS-----TSILEPI 537
            +  +  + K    R  H + WG IC + TP+G + GL+KN+ +  L+S       +++ +
Sbjct: 498  QNPIAASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNVALMCLMSRGTDHAEVVQAV 557

Query: 538  FEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVE 597
              ++       L D A   +    +VFV+G  IGV ++    + +LR +RR  EL  +V 
Sbjct: 558  QARIDGFRTIGLEDTADVRVA---RVFVNGTMIGVDRNPERLLHDLRTRRRNGELSNEVS 614

Query: 598  IKRDELQSEVRIFMDAGRILRPLLVVEN-------------MGKIKSLEGKNYTFQALLD 644
            I RD    E+R+F DAGR LRPL V EN             +   K+   K+ +++  L 
Sbjct: 615  IVRDIRDREIRVFSDAGRCLRPLFVAENCRLKLRKSGMRDLLVSEKAGGKKSISWKTALK 674

Query: 645  HGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHD 704
             G +EL+  EEE+    A      +   E +K   ++HCE+D S +LG+   IIP+ NH+
Sbjct: 675  KGYVELIDCEEEDSLLIA------MTPNEVEKNYYYSHCEMDPSMILGICASIIPYPNHN 728

Query: 705  HARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNH 764
             + R  YQS     QA+G   +N ++R+DT +H LFYPQ+PL RT          Y H++
Sbjct: 729  QSPRNTYQSAM-GKQAMGIYASNFNMRMDTTAHVLFYPQKPLVRTKAMT------YMHSN 781

Query: 765  ILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQV 824
             LP      G NA+VA++ + GYNQEDS++M+R+++ERG FRS   RS+KA    KE + 
Sbjct: 782  DLP-----AGHNAVVAISCYSGYNQEDSIIMSRSAVERGFFRSAFWRSFKA----KEERQ 832

Query: 825  KRRSSDDMVNFGKIQSKIGRVD--SLDDDGFPFIGANLQSGDIVIGKY-----AD----- 872
            KR + +   N  +   ++ R D   LD DG    G  +  GD+V+GK      AD     
Sbjct: 833  KRDALETFENPDRELCRVKRADYSKLDTDGLIKPGMRVLGGDVVVGKTIPLPEADLEKLT 892

Query: 873  ------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQ 926
                  +  D SI  + TE+G+V KV+L+ N++ + F+ V +R ++ P +GDKF S HGQ
Sbjct: 893  TGNTKITKRDASITSRTTEKGVVDKVMLTMNNNDR-FTKVKIRTIKIPNIGDKFCSRHGQ 951

Query: 927  KGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGL 986
            KG  G    QE+ PF   GIVPD++INPHA PSR T   L+E   GK     G  +    
Sbjct: 952  KGTNGIQFRQEDMPFNRDGIVPDLIINPHAIPSRMTVAHLIETLAGKVACYKGGEV---- 1007

Query: 987  KRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSE 1046
              YATPF +  VD   + LH     ++G E LY+G TG  +  LIF GPTFYQRL H+S 
Sbjct: 1008 --YATPFCSVVVDDFGKALHALRSQRYGNECLYNGHTGLPLDHLIFFGPTFYQRLKHLSG 1065

Query: 1047 DKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQM 1106
            DK+  R  GP+ PL RQP   R   GG++FGEMERDC++++GA+  L ERLF +SD Y +
Sbjct: 1066 DKIHARPRGPLQPLVRQPTEGRAHEGGLRFGEMERDCMLSYGASQWLRERLFRVSDYYTV 1125

Query: 1107 HICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITL 1166
            H+C  C  +            K+    C+ C++   I +  +PY  KLL QEL SM I  
Sbjct: 1126 HVCNMCGTIC-------VADTKLNRYQCKGCENDTRISQVLMPYACKLLFQELMSMTILP 1178

Query: 1167 KFDT 1170
            +  T
Sbjct: 1179 RLGT 1182


>gi|323449030|gb|EGB04921.1| hypothetical protein AURANDRAFT_38738 [Aureococcus anophagefferens]
          Length = 1147

 Score =  588 bits (1517), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 391/1177 (33%), Positives = 595/1177 (50%), Gaps = 140/1177 (11%)

Query: 55   LQKAFDSFGETIVEP--GYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPR 112
            +Q+  D  GE  V+P   Y P ++      +A + F QV + KP+    +G    +MFP 
Sbjct: 1    MQELVDDSGELTVKPETQYTPGQESVTRSTFAVL-FNQVYVSKPTATERDGTTS-NMFPH 58

Query: 113  HARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVM 172
             ARL+NMTYSS M V +      + R+ ++   T R           ++    +G +P+M
Sbjct: 59   EARLRNMTYSSPMYVDISVNSACRIRMLAEDGSTHR----------IDSPKEFLGYVPIM 108

Query: 173  VKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNS 221
            ++S  C +         E G+C +D GGYF+I G+EKV VAQE++    ++       + 
Sbjct: 109  LRSRFCVLADKSDKELCELGECIYDQGGYFVINGSEKVVVAQERMSNNHVYCFRKKQPHK 168

Query: 222  MGWTVAYKSENKRNRLIVRLVDMSKFEDI-----KGGEKVLSVYFLSTEIPIWILFFALG 276
              W V  +S  +        + M  +        +G +  +++ ++  ++P+ I+F ALG
Sbjct: 169  YSWVVECRSHVEHGARPTSTIYMQMYNKAGRGQSQGNQIRMTLPYIRVDVPVIIVFRALG 228

Query: 277  VSSDKEIVNLIDFTCEDCSILNILFASIHDA---DNKCDEF----RKGRNA-------LK 322
              +D++I+  + +   D  ++  L  S+ +A    N+        R+G          ++
Sbjct: 229  FVADRDILEHVVYDFSDTEMMEQLRPSLDEAFVVQNQTIALDFIGRRGSATNIGRSKRVQ 288

Query: 323  YVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRD 382
            Y  +L++    P    TEE  +T          +KA F+GY+V  LL     R   D+RD
Sbjct: 289  YAKELLQKEVLP-HVGTEEQSDT----------KKAFFVGYIVHKLLMCSLERIDEDDRD 337

Query: 383  DFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLS 442
             +  KRL+LAG LL    ++      K +   LQ+ +   R    +   + + ++T+GL 
Sbjct: 338  HYGKKRLDLAGPLLGGLFRMLFRKLTKDVLAYLQKCIDEGRDFN-LASAIKSRVITDGLR 396

Query: 443  RAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSH 502
             + +TG W    ++    +G+   L R     TL  LRR    +   GK    R  H +H
Sbjct: 397  YSLATGNWGD--RKDASRAGVSQVLNRLTYASTLSHLRRLNTPLGREGKQAKPRQLHNTH 454

Query: 503  WGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLG--G 559
            WG IC   TP+G+  GLVKNL +   VS  S   PI E L    ME L + +  ++   G
Sbjct: 455  WGFICPAETPEGQAVGLVKNLALMSYVSVGSPQSPILEFLEEWSMENLEEISPQTIADPG 514

Query: 560  KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRP 619
              K+FV+G W+GV +D  +  S LR  RR+ ++  +V + RD  + E+RI+ DAGR+ RP
Sbjct: 515  TTKIFVNGSWVGVHRDPSTLESTLRSLRRQIDIDPEVSVVRDIKEKELRIYTDAGRVCRP 574

Query: 620  LLVVENMGK---------IKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLK 670
            LL++    +         I+ L      +  LL  G++ELV TEEEE       I  +  
Sbjct: 575  LLIISKFSRQELRLRKSHIQKLVNGELGWTQLLVKGLVELVDTEEEETTM----IAMVPS 630

Query: 671  DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSI 730
            D+ +     +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   +N   
Sbjct: 631  DLNETYSSTYTHCEIHPSMILGICGSIIPFPDHNQSPRNTYQSAM-GKQAMGIYASNFQQ 689

Query: 731  RVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQE 790
            R+DTLSH L YPQ+PL  T   +        H H     EL +G NAIVA+  + GYNQE
Sbjct: 690  RMDTLSHVLHYPQKPLATTRAME--------HLHFR---ELPSGVNAIVAIMCYTGYNQE 738

Query: 791  DSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQ---------VKRRSSDDMVNFGKIQSK 841
            DSL+MN+A+++RG+FRS   R+Y   VD + ++          +R + D          +
Sbjct: 739  DSLIMNQAAIDRGLFRSTFYRTY---VDQESIRGLGEAFHETFERPTRDQCTAM-----R 790

Query: 842  IGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA---------------DHSIKLKHTER 886
             G  D +D DG    G  +   DI+IGK A +                 D S  ++  E 
Sbjct: 791  HGSYDKVDCDGLVAPGLRVSGADILIGKTAPTTPLGMDGNLNHCQFTKQDSSTAMRPNES 850

Query: 887  GMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGI 946
            G+V +V+LS+N +G  F+ V  R +R P +GDKF+S HGQKG +G   SQE+ P+T  G+
Sbjct: 851  GLVDQVMLSTNQEGMKFTKVRTRTIRIPQIGDKFASRHGQKGTIGMTYSQEDMPWTRDGV 910

Query: 947  VPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLH 1006
             PDIV+NPHA PSR T G L+E    K       G  +G +  ATPF   SVD I   LH
Sbjct: 911  SPDIVVNPHAIPSRMTIGHLVECLQSK------VGALTGKEGDATPFTDVSVDQIAGVLH 964

Query: 1007 RAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVA 1066
              G+ + G E +Y G TG M+ + +F+GPTFYQRL H+ +DK+  R+ GPV  LTRQP+ 
Sbjct: 965  ELGYHRHGNEVMYSGHTGRMIHAKVFLGPTFYQRLKHLVDDKIHARSRGPVTMLTRQPME 1024

Query: 1067 DRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGG 1126
             R R GG++ GEMERDCL++HG ++ L +R+F  SD Y +H+C  C  +A+   R     
Sbjct: 1025 GRARDGGLRMGEMERDCLVSHGVSSFLRDRMFANSDPYAVHVCTSCGMIAHADLR----- 1079

Query: 1127 RKVRGPYCRICDSGD------DIVKANVPYGAKLLCQ 1157
                  +   C++ D       IV+ ++PY  KLL Q
Sbjct: 1080 -----KHLYWCNNKDCQHAKARIVRVHIPYACKLLFQ 1111


>gi|194386684|dbj|BAG61152.1| unnamed protein product [Homo sapiens]
          Length = 1083

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 394/1127 (34%), Positives = 573/1127 (50%), Gaps = 142/1127 (12%)

Query: 112  RHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPV 171
            +HARL+N+TYS+ + V +          T    K G EQ      L  +     IG+IP+
Sbjct: 20   KHARLRNLTYSAPLYVDI----------TKTVIKEGEEQ------LQTQHQKTFIGKIPI 63

Query: 172  MVKSDLCWMKGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWT 225
            M++S  C + G+      E  +C  D GGYFII G+EKV +AQE++    ++V       
Sbjct: 64   MLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSK 123

Query: 226  VAYKSENKRN-------------RLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILF 272
             AY  E +                ++ R    +K   I G   V ++ ++  E+PI I+F
Sbjct: 124  YAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAI-GQRIVATLPYIKQEVPIIIVF 182

Query: 273  FALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA------- 320
             ALG  SD++I+  I +  ED  ++ ++  S+ +A      N    F   R A       
Sbjct: 183  RALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKE 242

Query: 321  --LKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKC 378
              +KY  ++++    P    ++ C             +KA FLGYMV  LL A  GRR+ 
Sbjct: 243  KRIKYAKEVLQKEMLPHVGVSDFC-----------ETKKAYFLGYMVHRLLLAALGRREL 291

Query: 379  DNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRD--LYGDRTVR-----PIEYY 431
            D+RD + NKRL+LAG LL        A   + M K L ++  +Y  + +       +E  
Sbjct: 292  DDRDHYGNKRLDLAGPLL--------AFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELA 343

Query: 432  LDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGK 491
            +   I+++GL  + +TG W    K  +  +G+   L R     TL  LRR    +   GK
Sbjct: 344  IKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGK 403

Query: 492  VGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLA 550
            +   R  H + WG +C   TP+G   GLVKNL +   +S  S   PI E L    ME L 
Sbjct: 404  LAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 463

Query: 551  DDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRI 609
            + +  ++    K+FV+G W+G+ KD    ++ LR+ RR+ ++  ++V + RD  + E+RI
Sbjct: 464  EISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRI 523

Query: 610  FMDAGRILRPLLVVE---------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCC 660
            + DAGRI RPLL+VE         ++ ++K  E  NY++Q L+  G++E + T EEE   
Sbjct: 524  YTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVM 583

Query: 661  TAWGIKYLLKDIEDKKPI---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHS 717
             A        D+++K+      +THCE+  S +LG+   IIPF +H+ + R  YQS    
Sbjct: 584  LAMTPD----DLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMG 638

Query: 718  SQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNA 777
             QA+G   TN  +R+DTL+H L+YPQ+PL  T   +            L   EL  G N+
Sbjct: 639  KQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSME-----------YLRFRELPAGINS 687

Query: 778  IVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNK---EMQVKRRSSDDMVN 834
            IVA+  + GYNQEDS++MNR++++RG FRS   RSYK +   K   + +V  + + +   
Sbjct: 688  IVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQ 747

Query: 835  FGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD---------------SGADHSI 879
                  +    D LDDDG    G  +   D++I K                  +  D S 
Sbjct: 748  ----GMRHAIYDKLDDDGLIAPGVRVSGDDVIISKTVTLPENEDELESTNRRYTKRDCST 803

Query: 880  KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENF 939
             L+ +E G+V +V+++ N +G  F  + +R VR P +GDKF+S HGQKG  G    QE+ 
Sbjct: 804  FLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDM 863

Query: 940  PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SV 998
            PFT +GI PDI+INPHA PSR T G L+E   GK   +  KG        ATPF    +V
Sbjct: 864  PFTCEGITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGEIGD----ATPFNDAVNV 917

Query: 999  DAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVH 1058
              I+  L   G+   G E LY+G TG  + S IFIGPT+YQRL HM +DK+  R  GP+ 
Sbjct: 918  QKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQ 977

Query: 1059 PLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANV 1118
             L RQP+  R R GG++FGEMERDC IAHGAA  L ERLF  SD YQ+H+C  C  +A  
Sbjct: 978  ILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAI- 1036

Query: 1119 IQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
                     +     CR C +   I    +PY  KLL QEL SM I 
Sbjct: 1037 ------ANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIA 1077


>gi|358337637|dbj|GAA55991.1| DNA-directed RNA polymerase II subunit RPB2 [Clonorchis sinensis]
          Length = 1921

 Score =  587 bits (1514), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 410/1212 (33%), Positives = 611/1212 (50%), Gaps = 141/1212 (11%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSK 75
            ++  +  +  C     S+F+E GLV  Q++S++EFI+  +QK  +     I+E   +   
Sbjct: 778  EITPDMWQEACWIVISSYFDEKGLVRQQLDSFDEFIQTSIQKIVED--SPIIELQAEAQH 835

Query: 76   KG---EGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQ 132
                 E   +Y  ++F Q+ L K + +  +G     M P  ARL+N+TY++ + V V   
Sbjct: 836  TSGVLETPVQY-RLKFEQIYLSKATHWEKDGSSV-PMTPNDARLRNLTYAAPLYVDVM-- 891

Query: 133  VYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKG 186
                K++  D  +   E+ ++K+          IG+IP+M++S  C +  +      E  
Sbjct: 892  ----KKIIRDDGE--EEKPLEKK---------FIGKIPIMLRSTYCLLSIMSDRDLAELN 936

Query: 187  DCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLV---- 242
            +C  D GGYFII G+EKV +AQE++             TV   S    + L + ++    
Sbjct: 937  ECPLDPGGYFIINGSEKVLIAQEKMATN----------TVLEHSSRPASTLWINMMARGG 986

Query: 243  -DMSKFEDIKGGEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNIL 300
             D SK   I  G++++++  ++  EIP+ I+F ALG  +D++I+  I +  +D  +  ++
Sbjct: 987  KDGSKRATI--GQRIVAILPYIKQEIPVLIVFRALGFVADRDILEHIIYDFDDTEMREMI 1044

Query: 301  FASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEECMNTY 346
              S+ DA           F   R A         +KY  ++++  T P    ++ C    
Sbjct: 1045 KPSLDDAFVIQEQKVALNFIGSRGARPGVTKEKRIKYAKEILQKETLPHVGVSDFC---- 1100

Query: 347  LFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAH 406
                     +KA FLGYMV  LL A   RR  D+RD + NKRL+LAG LL    +    +
Sbjct: 1101 -------ETRKAYFLGYMVHRLLLAALKRRDVDDRDHYGNKRLDLAGPLLAFLFRGLFRN 1153

Query: 407  ARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVAN 466
              K +    Q+ +   +    +E  + + I+T+GL  + +TG W    K  +   G+   
Sbjct: 1154 LTKEIRLYAQKFIDKGKDFN-LELAIRSQIITDGLKYSLATGNWGDQKKANQARPGVSQV 1212

Query: 467  LGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVT 526
            L R     TL  LRR    +   GK+   R  H + WG IC   TP+G   GLVKNL + 
Sbjct: 1213 LNRLTFASTLSHLRRLNSPIGRDGKLARPRQLHNTLWGMICPAETPEGSAVGLVKNLALM 1272

Query: 527  GLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRR 585
              +S  S   PI E L    ME L + A  ++G   K+FV+G W+G+       +  LR+
Sbjct: 1273 AYISVGSQPSPILEFLEEWSMENLEEIAPSAIGKTCKIFVNGCWVGIHNSPDHLMVTLRK 1332

Query: 586  KRRRKE-LPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGK--- 635
             RR+ + + ++V + RD    E+RI+ DAGRI RPL++VE          I+ L+ K   
Sbjct: 1333 LRRQVDVIVSEVSMVRDYRDQEIRIYTDAGRICRPLVIVEKGKLLLKRSHIEFLKDKAYN 1392

Query: 636  NYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSC 695
             Y++Q L+  G++E + T EEE    A G   +   +   K    THCE+  S +LG+  
Sbjct: 1393 RYSWQDLVLSGVVEYIDTLEEETVMIAMGPAEMQAAVHYCK--THTHCEIHPSMILGICA 1450

Query: 696  GIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCL 755
             IIPF +H+ + R  YQS     QA+G   +N   R+DTL++ L+YPQ+PL  T   +  
Sbjct: 1451 SIIPFPDHNQSPRNTYQS-AMGKQAMGVYISNFHTRMDTLANVLYYPQKPLVATRSME-- 1507

Query: 756  GKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKA 815
                      L   EL  G NAIVA+  + GYNQEDS+++N ++++RG FRSE  R+YK 
Sbjct: 1508 ---------YLRFRELPAGINAIVAIATYTGYNQEDSVILNESAIQRGFFRSEFYRTYKD 1558

Query: 816  EVDNKEMQVKRRSSDDMVNFGKIQSKIGR------VDSLDDDGFPFIGANLQSGDIVIGK 869
                   Q  R   D    F K   +  +       D LDDDG    G  +   D++IGK
Sbjct: 1559 -------QEARHGMDQEEVFEKPNPQQCQGMRHAIYDKLDDDGLIAPGTRVSGDDVLIGK 1611

Query: 870  YAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSP 914
                              +  D S+ ++ +E G+V +V+++ N++G  F  V +R  ++P
Sbjct: 1612 TITLPENEDEMEGGQRRYTKRDASVFMRRSEYGIVDQVMITWNNEGNKFCKVRVRTTKTP 1671

Query: 915  CLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKG 974
             +GDKF+S HGQKG  G    QE+ PFT +GI PDI+INPHA PSR T G L+E   GK 
Sbjct: 1672 QVGDKFASRHGQKGTCGIRYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGK- 1730

Query: 975  IAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFI 1033
              +  KG        ATPF    +V  I+  L   G+   G E +Y+G TG  + S IF+
Sbjct: 1731 -VSANKGEIGD----ATPFNDAVNVRKISLLLQEYGYQHTGNEIMYNGFTGRKLNSQIFL 1785

Query: 1034 GPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL 1093
            GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC IAHGAA  L
Sbjct: 1786 GPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFL 1845

Query: 1094 HERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAK 1153
             ERLF  SD YQ+++C  C  +A   QR        +   CR C +   I    +PY  K
Sbjct: 1846 RERLFFASDPYQVYVCNLCGLIAIAHQR-------NKTYECRSCKNTTQISLVKLPYACK 1898

Query: 1154 LLCQELFSMGIT 1165
            LL QEL SM I 
Sbjct: 1899 LLFQELMSMSIA 1910


>gi|440493525|gb|ELQ75984.1| RNA polymerase II, second largest subunit, partial
            [Trachipleistophora hominis]
          Length = 1381

 Score =  587 bits (1513), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 413/1269 (32%), Positives = 616/1269 (48%), Gaps = 184/1269 (14%)

Query: 6    NGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGET 65
            N F  P        E  +  C  A  S F++YGLV  Q++S+NEFI+  +Q+  D     
Sbjct: 185  NAFYHPMP------EITEEDCWTAISSHFDQYGLVRQQLDSFNEFIETTMQEIIDENNTL 238

Query: 66   IVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRM 125
            IV+    PS  G+   +   ++FGQ+ + KP       G    +FP  ARL+++TY+  +
Sbjct: 239  IVQS--IPSA-GKESVQKIILKFGQIYISKPPVITEQDGKTSTLFPCEARLRDLTYACPL 295

Query: 126  KVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV-- 183
             V V   V  +   + D F      Y Q          + IG +PVM++S  C + G+  
Sbjct: 296  YVDVTKSV-VENEESDDHF------YRQ----------VPIGLVPVMLRSSCCILHGLSD 338

Query: 184  ----EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAY--------KS 230
                E G+C +D GGYF+I G+EKV +AQE++    + V   S+     Y        K 
Sbjct: 339  KNLTELGECPYDQGGYFVINGSEKVLIAQERMATNVVHVFEKSLATYTHYAEIRSAPQKG 398

Query: 231  ENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFT 290
                + LIV+LV  ++ E +       ++  +  +IP+ +++ ALG  SDKEI+  + + 
Sbjct: 399  SKTPSALIVKLVKKTETEFLLRA----TLPGVRQDIPVIVIYRALGFVSDKEIMEHLIYD 454

Query: 291  CEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTE-------ECM 343
              D  +L ++  SI +A    D+      AL Y+ K     + P G   E       + +
Sbjct: 455  PNDKEMLQVIRPSIEEAFVIQDQ----NVALDYIGK----RSAPAGSPREKRIQFAKDIL 506

Query: 344  NTYLFPSLHGTKQ-----KARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLER 398
                 P + G KQ     KA F GYM++ LL     R   D+RD +  KR++LAG LL +
Sbjct: 507  IREFLPHI-GDKQFCETRKAFFFGYMIQRLLNCAMKRVSPDDRDHYGKKRMDLAGPLLAQ 565

Query: 399  ELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTE 458
              KV      +   K +Q+ +   R    I   L  SI+T G   + +TG W    +  +
Sbjct: 566  LFKVLFRKLCQETIKHMQKCIENKRDFN-IALGLKTSIITQGFRYSLATGNWGEQSRAMQ 624

Query: 459  RISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCG 518
              +G+   L R N + TL  LRR    +   GK+   R  H +HWG +C   TP+G+ CG
Sbjct: 625  TKAGVAQVLNRYNFISTLSHLRRVNSPMGREGKLAKPRQLHNTHWGMVCPAETPEGQACG 684

Query: 519  LVKNLGVTGLVSTS-ILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSL 577
            LVKNL +   +S +  +E I E L   G++ L + A   +    KVFV+G W+G+  +  
Sbjct: 685  LVKNLSLLAYISVNHPIEGIVELLEEFGLKSLEEVAPSEVYKATKVFVNGTWLGITTERE 744

Query: 578  SFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKN- 636
               + L+R +R+  +   V I +     E+RI  D GR  RP  VVEN   + + E  N 
Sbjct: 745  FLYTVLKRMKRQARIHKDVSIVQSLRDKEIRILCDVGRPCRPCFVVENNRILFTAEHANM 804

Query: 637  -----YTFQALLDHGIIELVGTEEEEDCCTAWG--------------------------- 664
                   ++ L+++GI+E +  EEE+                                  
Sbjct: 805  LREGKMIWEDLVNNGIVEYLDVEEEDQAMICMSPEELYEQQMVTDRINAELRGESVERPR 864

Query: 665  ---IKYLLKDIEDKKP--------IKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQS 713
               +K+  K +    P          +THCE+  S +LG+   +IPF +H+ + R  YQS
Sbjct: 865  ERVLKHTSKHVGSVYPGNDPHDLITNYTHCEIHPSMILGICASMIPFPDHNQSPRNTYQS 924

Query: 714  QKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYN 773
               S QA+G   TN  +R+D+LS+ LFYPQ+PL  T   +            L   EL  
Sbjct: 925  -AMSKQAMGVYATNFLLRMDSLSNILFYPQKPLVTTRAME-----------YLRFRELPA 972

Query: 774  GQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYK-AEVDNK----EMQVKRRS 828
            GQNAIVA+  + GYNQEDS++MN+++++RG+FRS   R+Y   E  N     E+  K R 
Sbjct: 973  GQNAIVAIACYTGYNQEDSVIMNQSAIDRGLFRSFLYRTYTDQETMNGPGCVEVFAKPRR 1032

Query: 829  SDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD---------------- 872
             +       ++ K    D LD+DG    G  +   D++IGK                   
Sbjct: 1033 GE------VLRMKNLNYDKLDEDGIVNPGVRVTGEDVLIGKILPVIERMDVNGNSLIDNR 1086

Query: 873  -------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDK 919
                         S  D S  ++ TE G+V  V++ +N +G  F+ V +R  R P +GDK
Sbjct: 1087 DEKINTESNTMNVSWKDASTAMRPTEEGVVDSVIV-TNREGYKFTKVKIRSCRVPEMGDK 1145

Query: 920  FSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALG 979
            F+S HGQKG +G     E+ PFT +GI+PDI+INPH  PSR T G L+E  LGK ++AL 
Sbjct: 1146 FASRHGQKGTIGITLRAEDMPFTSEGIIPDIIINPHCIPSRMTIGHLIECLLGK-VSAL- 1203

Query: 980  KGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQ 1039
                +G +   TPF+  +V AI+EQL   G+   G E +Y+G TG  + + IFIGPT+YQ
Sbjct: 1204 ----AGEEGDGTPFSDVTVGAISEQLKDFGYEHRGLETMYNGMTGRKLDAQIFIGPTYYQ 1259

Query: 1040 RLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFT 1099
            RL HM +DKV  R  GP+  LTRQP   R R GG++FGEMERDC+I+HG +  L ERLF 
Sbjct: 1260 RLKHMVQDKVHARAHGPLQVLTRQPAEGRSRDGGLRFGEMERDCIISHGTSLFLRERLFE 1319

Query: 1100 LSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQEL 1159
            +SD + + +C +C             G       C+ C +   +    +PY  KLL QEL
Sbjct: 1320 VSDFFSLVVCEQC-------------GLFCLEDGCKGCGNKTKLAIVEMPYAFKLLLQEL 1366

Query: 1160 FSMGITLKF 1168
              M I  + 
Sbjct: 1367 MGMNIAPRL 1375


>gi|355712719|gb|AES04443.1| polymerase II polypeptide B, 140kDa [Mustela putorius furo]
          Length = 1104

 Score =  583 bits (1503), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 387/1104 (35%), Positives = 568/1104 (51%), Gaps = 136/1104 (12%)

Query: 86   MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
            ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +          T    K
Sbjct: 38   LKFEQIYLSKPTHWERDGAPS-PMMPNEARLRNLTYSAPLYVDI----------TKTVIK 86

Query: 146  TGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFIIK 199
             G EQ      L  +     IG+IP+M++S  C + G+      E  +C  D GGYFII 
Sbjct: 87   EGEEQ------LQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIIN 140

Query: 200  GAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRN-------------RLIVRLVDMSK 246
            G+EKV +AQE++    ++V        AY  E +                ++ R    +K
Sbjct: 141  GSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAK 200

Query: 247  FEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHD 306
               I G   V ++ ++  E+PI I+F ALG  SD++I+  I +  ED  ++ ++  S+ +
Sbjct: 201  KSAI-GQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDE 259

Query: 307  A-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEECMNTYLFPSLH 352
            A      N    F   R A         +KY  ++++    P    ++ C          
Sbjct: 260  AFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFC---------- 309

Query: 353  GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMA 412
               +KA FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL        A   + M 
Sbjct: 310  -ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLL--------AFLFRGMF 360

Query: 413  KALQRD--LYGDRTVR-----PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVA 465
            K L ++  +Y  + +       +E  +   I+++GL  + +TG W    K  +  +G+  
Sbjct: 361  KNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQ 420

Query: 466  NLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV 525
             L R     TL  LRR    +   GK+   R  H + WG +C   TP+G   GLVKNL +
Sbjct: 421  VLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLAL 480

Query: 526  TGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELR 584
               +S  S   PI E L    ME L + +  ++    K+FV+G W+G+ KD    ++ LR
Sbjct: 481  MAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLR 540

Query: 585  RKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVE---------NMGKIKSLEG 634
            + RR+ ++  ++V + RD  + E+RI+ DAGRI RPLL+VE         ++ ++K  E 
Sbjct: 541  KLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREY 600

Query: 635  KNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPI---KFTHCELDMSFLL 691
             NY++Q L+  G++E + T EEE    A        D+++K+      +THCE+  S +L
Sbjct: 601  NNYSWQDLVASGVVEYIDTLEEETVMLAM----TPDDLQEKEVAYCSTYTHCEIHPSMIL 656

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YPQ+PL  T  
Sbjct: 657  GVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRS 715

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
             +            L   EL  G N+IVA+  + GYNQEDS++MNR++++RG FRS   R
Sbjct: 716  ME-----------YLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYR 764

Query: 812  SYKAEVDNK---EMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIG 868
            SYK +   K   + +V  + + +         +    D LDDDG    G  +   D++IG
Sbjct: 765  SYKEQESKKGFDQEEVFEKPTRETCQ----GMRHAIYDKLDDDGLIAPGVRVSGDDVIIG 820

Query: 869  KYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRS 913
            K                  +  D S  L+ +E G+V +V+++ N +G  F  + +R VR 
Sbjct: 821  KTVTLPENEDELEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRI 880

Query: 914  PCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGK 973
            P +GDKF+S HGQKG  G    QE+ PFT +GI PDI+INPHA PSR T G L+E   GK
Sbjct: 881  PQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGK 940

Query: 974  GIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIF 1032
               +  KG        ATPF    +V  I+  L   G+   G E LY+G TG  + S IF
Sbjct: 941  --VSANKGEIGD----ATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIF 994

Query: 1033 IGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAAN 1092
            IGPT+YQRL HM +DK+  R  GP+  L RQP+  R R GG++FGEMERDC IAHGAA  
Sbjct: 995  IGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQF 1054

Query: 1093 LHERLFTLSDSYQMHICRKCKNVA 1116
            L ERLF  SD YQ+H+C  C  +A
Sbjct: 1055 LRERLFEASDPYQVHVCNLCGIMA 1078


>gi|321257963|ref|XP_003193762.1| DNA-dependent RNA polymerase II RPB140 [Cryptococcus gattii WM276]
 gi|317460232|gb|ADV21975.1| DNA-dependent RNA polymerase II RPB140, putative [Cryptococcus gattii
            WM276]
          Length = 1193

 Score =  583 bits (1502), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 404/1228 (32%), Positives = 618/1228 (50%), Gaps = 190/1228 (15%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            SFF E GLV  Q+ S+NEFI+N +Q+  D      ++     +     E R   + FGQ+
Sbjct: 60   SFFEEKGLVRQQLESFNEFIENTMQEIVDDHSRLTLDQFTQYTGVAGDETRRYEISFGQI 119

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             L + +    +G     +FP+ ARL+N+TYS+ + V ++ +  T   V  D  +   +  
Sbjct: 120  YLARVNHTEMDGRTNM-LFPQEARLRNLTYSAPLYVDIKKRTLTASGV-DDPVEADWQPA 177

Query: 152  I--QKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFIIKGAEK 203
            +    EV S E     IG++PVMV+S+ C + G+      E G+C +D GGYFII G+EK
Sbjct: 178  VGDDGEVESAEEEKTSIGKVPVMVRSNFCLLHGLPDDQCHEIGECPYDQGGYFIISGSEK 237

Query: 204  VFVAQEQICLKRLWV-----SNSMGWTVAYKSENKR-----NRLIVRLVDMSKFEDIKGG 253
            V +AQE++    ++V          +     S+ ++     N   VR+   ++     GG
Sbjct: 238  VLIAQERMATNHVFVFLKAAPARFTYFAEINSQKEKGGRVANHTEVRM--YARASGTTGG 295

Query: 254  EKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDE 313
               +S+ +   +IP+ ++F ALG+  D+++++ + F  ED ++L +L  SI ++    D 
Sbjct: 296  VIRVSLPYTKVDIPLVVVFRALGIVPDRDVLSHVCFGAEDEALLEMLQPSIEESFAVQDR 355

Query: 314  FRKGRNALKYVDKLIKGTTFPPGE---STEECMNTYLFPSLHGTK----QKARFLGYMVK 366
                  AL ++ +  +    P  +   +  + ++    P +   +    +KA FLGYM  
Sbjct: 356  ----DTALDFIGRRGQHEKAPRAQRQRAAFDILHKEFLPHVSTAEGFESKKAYFLGYM-- 409

Query: 367  CLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR 426
            C+ Q               NK   L                              +  +R
Sbjct: 410  CVEQ---------------NKEFAL------------------------------NMAIR 424

Query: 427  PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
            P       + +T+GL  A +TG W    KR    +G+   L R     TL  LRRT   +
Sbjct: 425  P-------NTVTDGLKYALATGNWG---KRDNTRAGVSQVLNRYTFASTLSHLRRTNTPI 474

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSG 545
                K    R  H +HWG +C   TP+G  CGLVKNL +   +S  S   P+ E L   G
Sbjct: 475  GRDSKAAKPRQLHNTHWGMVCPAETPEGSACGLVKNLALMSYISVGSYSAPVMEFLEEWG 534

Query: 546  MEKLAD--DASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDEL 603
            +E L++  DA  +     KVFV+G W+G+ +D+ +  + L + RR  +L  +V I RD  
Sbjct: 535  LEDLSEYQDAPTAT----KVFVNGVWMGIHRDAPTLHNNLLQMRRGGQLKYEVSIVRDIR 590

Query: 604  QSEVRIFMDAGRILRPLLVVE-----------NMGKIKSLEGKNY---TFQALLDHGIIE 649
            + E+R++ DAGR+ RPL +V+           ++ +I  L  +      +  LL  GI+E
Sbjct: 591  ERELRLYTDAGRVCRPLFIVDQPTQTLRLKRDHIDRIDQLADEGLLSGAWDKLLSEGIVE 650

Query: 650  LVGTEEEE------------DCCTAWGIKYLLKD-----IEDKKPI----------KFTH 682
             V   EEE            +  TA     L++D     +E   P           ++TH
Sbjct: 651  YVDAAEEETILIAMTPEDLVNARTAHSKHELVRDRAAHNLESFDPAARIKSTVWSQQYTH 710

Query: 683  CELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYP 742
             E+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DT+ + L+YP
Sbjct: 711  MEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVCLTNYQLRMDTMVNVLYYP 769

Query: 743  QRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLER 802
            Q+PL  T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++S++R
Sbjct: 770  QKPLATTRSME-----------YLKFSELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDR 818

Query: 803  GMFRSEHIRSYKAEVDNKEMQ--VKRRSSDDMVNFGKIQSKIGRVD---SLDDDGFPFIG 857
            G+FRS + RSY    D ++M+  VK  + +       ++ K G  D    LD DG    G
Sbjct: 819  GLFRSLYFRSY---TDTEKMKGMVKAETIEKPDRNETLRMKHGTSDRYAKLDVDGLVAPG 875

Query: 858  ANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKN 902
             N+   DI+IGK A                +  D S  LK TE+G+V +V+LS+N +G  
Sbjct: 876  TNVNGDDILIGKTAPLPEDSEELGQRTQLHTKRDISTPLKSTEQGVVDQVMLSTNGEGNM 935

Query: 903  FSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQT 962
            F  + +R  R P +GDKF+S HGQKG +G    QE+ PFT +G+VPDI+INPHA PSR T
Sbjct: 936  FVKIRVRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGLVPDIIINPHAIPSRMT 995

Query: 963  PGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGR 1022
             G L+E  L K ++ L     +G +  ATPF   +V+A+++ L   G+   G E LY G 
Sbjct: 996  IGHLVECLLSK-VSTL-----TGAEGDATPFTELTVEAVSKVLRAKGYQSRGFEVLYHGH 1049

Query: 1023 TGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1082
            TG  +++ ++ GPT+YQRL HM +DK+  R  GP+  LTRQPV  R R GG++FGEMERD
Sbjct: 1050 TGRKLQAQVYFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEMERD 1109

Query: 1083 CLIAHGAAANLHERLFTLSDSYQMHICRKC--KNVANVIQRVVGGGRKVRGPYCRICDSG 1140
            C+I+HG A  L ER++  SD++++H+C  C    VAN+         K +  YC +C + 
Sbjct: 1110 CMISHGIAGFLKERMYDSSDAFRIHVCDICGLMAVANL---------KKQEFYCSVCRNS 1160

Query: 1141 DDIVKANVPYGAKLLCQELFSMGITLKF 1168
              I +  +PY AKLL QEL +M I  + 
Sbjct: 1161 TQISQVYIPYAAKLLFQELQAMNIACRM 1188


>gi|241813048|ref|XP_002416483.1| DNA-directed RNA polymerase II, putative [Ixodes scapularis]
 gi|215510947|gb|EEC20400.1| DNA-directed RNA polymerase II, putative [Ixodes scapularis]
          Length = 1142

 Score =  582 bits (1500), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 397/1221 (32%), Positives = 604/1221 (49%), Gaps = 171/1221 (14%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP-GYDPS 74
            ++  +  +  C     ++F+E GLV  Q++S++EFI+  +Q+  +   +  ++      S
Sbjct: 16   EITPDLWQEACWIVISAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDTPQIDLQAEAQHAS 75

Query: 75   KKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVY 134
             + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +     
Sbjct: 76   GEIENPPRYL-LKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLTYSAPLYVDI----- 128

Query: 135  TQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDC 188
                 T    K G      +E +  +     IG+IP+M++S  C +  +      E  +C
Sbjct: 129  -----TKTVIKEG------EEPVETQHQKTFIGKIPIMLRSTYCLLNSLTDRDLSELNEC 177

Query: 189  DFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR---------NRLIV 239
              D GGYFII G+EKV +AQE++    ++V         +K+E +          + L V
Sbjct: 178  PLDPGGYFIINGSEKVLIAQEKMATNTVYVFQMKDSKFVFKAECRSCLEHSSRPTSTLWV 237

Query: 240  RLVDMSKFEDIKG--GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
             ++        K   G++++++  ++  EIPI I+F ALG  +D++I+  I +  ED  +
Sbjct: 238  NMLARGGQGVRKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFEDPEM 297

Query: 297  LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
            + ++  S+ +A      N    F   R A         +KY  ++++    P    ++ C
Sbjct: 298  MEMVKPSLDEAFVIQEQNVALNFIGARGAHPGVTKERRIKYSREILQKEMLPHVGVSDFC 357

Query: 343  MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                         +KA +LGYMV  LL A  GRR+ D+RD + NKRL+LAG L+    + 
Sbjct: 358  -----------ETKKAYYLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLMAFLFRG 406

Query: 403  HIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISG 462
               +  K +    Q+ +   +    +E  +   I+T+GL  + +TG W    K  +  +G
Sbjct: 407  LFRNLTKEVRMYAQKFIDRGKDFN-LELAIKTRIITDGLRYSLATGNWGDQKKAHQARAG 465

Query: 463  IVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKN 522
            +   L R     TL  LRR    +   GK+   R  H + WG IC   TP+G   GLVKN
Sbjct: 466  VSQVLNRLTYASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGHAVGLVKN 525

Query: 523  LGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVS 581
            L +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    ++
Sbjct: 526  LALMSYISVGSQPSPILEFLEEWSMENLEEIAPSAIAEATKIFVNGCWVGIHRDPDQLMN 585

Query: 582  ELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKS 631
             LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VE+         +  +K 
Sbjct: 586  TLRKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRICRPLLIVEDQKLLLKRRHIDSLKE 645

Query: 632  LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPI---KFTHCELDMS 688
             E  NY++Q L+  G++E + T EEE       +     D++DK       +THCE+  S
Sbjct: 646  REYNNYSWQDLVASGVVEYIDTLEEETVM----LSMTPDDLQDKGFAYCSTYTHCEIHPS 701

Query: 689  FLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFR 748
             +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  
Sbjct: 702  MILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGIYITNFHVRMDTLAHVLYYPHKPLTT 760

Query: 749  TMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSE 808
            T   +            L   EL  G N+IVA+  + GYNQEDS+++N ++++RG FRS 
Sbjct: 761  TRSME-----------YLRFRELPAGINSIVAIMSYTGYNQEDSIIVNASAVDRGFFRSV 809

Query: 809  HIRSYK----AEVDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQ 861
              RSYK      V ++E Q +   R +   M N           D LDDDG    G  + 
Sbjct: 810  FYRSYKDSECKRVGDQEEQFEKPTRETCQGMRN--------AIYDKLDDDGIIAPGTRVS 861

Query: 862  SGDIVIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVV 906
              D++IGK                  +  D S  L+++E G+V +V+L+ N +G  F  +
Sbjct: 862  GDDVIIGKTITLPENDDDLESTNRRFTKRDASTFLRNSETGIVDQVMLTVNAEGYKFCKI 921

Query: 907  SLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQL 966
             +R VR P +GDKF+S HGQKG  G    QE+ PFT  G+ PDI+INPHA PSR T    
Sbjct: 922  RVRSVRIPQIGDKFASRHGQKGTCGITYRQEDMPFTADGLTPDIIINPHAIPSRMT---- 977

Query: 967  LEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEM 1026
                                              I+  L   G+   G E +Y+G TG  
Sbjct: 978  ---------------------------------KISNLLQEYGYHLRGNEVMYNGHTGRK 1004

Query: 1027 VRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIA 1086
            V + IF+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC I+
Sbjct: 1005 VNAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIS 1064

Query: 1087 HGAAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIV 1144
            HGAA  L ERLF +SD Y+ HIC  C    +AN+               C+ C +   I 
Sbjct: 1065 HGAAQFLRERLFEVSDPYRAHICNLCGLLAIANLRNNTFE---------CKGCRNKTQIS 1115

Query: 1145 KANVPYGAKLLCQELFSMGIT 1165
            +  +PY  KLL QEL SM I 
Sbjct: 1116 QIRLPYACKLLFQELMSMSIA 1136


>gi|58266096|ref|XP_570204.1| DNA-dependent RNA polymerase II RPB140 [Cryptococcus neoformans var.
            neoformans JEC21]
 gi|57226437|gb|AAW42897.1| DNA-dependent RNA polymerase II RPB140, putative [Cryptococcus
            neoformans var. neoformans JEC21]
          Length = 1193

 Score =  581 bits (1498), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 402/1228 (32%), Positives = 617/1228 (50%), Gaps = 190/1228 (15%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            SFF E GLV  Q+ S+NEFI+N +Q+  D      ++     +     E R   + FGQ+
Sbjct: 60   SFFEEKGLVRQQLESFNEFIENTMQEIVDDHSRLTLDQFTQYTGVAGDETRRYEISFGQI 119

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             L + +    +G     +FP+ ARL+N+TYS+ + V ++ +  T   V  D  +   +  
Sbjct: 120  YLARVNHTEMDGRTNM-LFPQEARLRNLTYSAPLYVDIKKRTLTASGV-DDPVEADWQPA 177

Query: 152  I--QKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFIIKGAEK 203
            +    EV   E     IG++PVMV+S+ C + G+      E G+C +D GGYFII G+EK
Sbjct: 178  VGDDGEVEGAEEEKTSIGKVPVMVRSNFCLLHGLPDDQCHEIGECPYDQGGYFIISGSEK 237

Query: 204  VFVAQEQICLKRLWV-----SNSMGWTVAYKSENKR-----NRLIVRLVDMSKFEDIKGG 253
            V +AQE++    ++V          +     S+ ++     N   VR+   ++     GG
Sbjct: 238  VLIAQERMATNHVFVFLKAAPARFTYFAEINSQKEKGGRVANHTEVRM--YARASGTTGG 295

Query: 254  EKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDE 313
               +S+ +   +IP+ ++F ALG+  D+++++ I F  ED ++L +L  SI ++    D 
Sbjct: 296  VIRVSLPYTKVDIPLVVVFRALGIVPDRDVLSHICFGAEDEALLEMLQPSIEESFAVQDR 355

Query: 314  FRKGRNALKYVDKLIKGTTFPPGE---STEECMNTYLFPSLHGTK----QKARFLGYMVK 366
                  AL ++ +  +    P  +   +  + ++    P +   +    +KA FLGYM  
Sbjct: 356  ----DTALDFIGRRGQHEKAPRAQRQRAAFDILHKEFLPHVSTAEGFESKKAYFLGYM-- 409

Query: 367  CLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR 426
            C+ Q               NK   L                              +  +R
Sbjct: 410  CVEQ---------------NKEFAL------------------------------NMAIR 424

Query: 427  PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
            P       + +T+GL  A +TG W    KR    +G+   L R     TL  LRRT   +
Sbjct: 425  P-------NTITDGLKYALATGNWG---KRDNTRAGVSQVLNRYTFASTLSHLRRTNTPI 474

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSG 545
                K    R  H +HWG +C   TP+G  CGLVKNL +   +S  S   P+ E L   G
Sbjct: 475  GRDSKAAKPRQLHNTHWGMVCPAETPEGSACGLVKNLALMSYISVGSYSAPVMEFLEEWG 534

Query: 546  MEKLAD--DASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDEL 603
            +E L++  DA  +     KVFV+G W+G+ +D+ +  + L + RR  +L  +V I RD  
Sbjct: 535  LEDLSEYQDAPTAT----KVFVNGVWMGIHRDAPTLHNNLLQMRRGGQLKYEVSIVRDIR 590

Query: 604  QSEVRIFMDAGRILRPLLVVE-----------NMGKIKSLEGKNY---TFQALLDHGIIE 649
            + E+R++ DAGR+ RPL +V+           ++ +I  +  +      +  LL  GI+E
Sbjct: 591  ERELRLYTDAGRVCRPLFIVDQPTQTLRLKRDHIDRIDQMADEGLLSGAWDKLLSEGIVE 650

Query: 650  LVGTEEEE------------DCCTAWGIKYLLKD-----IEDKKPI----------KFTH 682
             V   EEE            +  TA     L++D     +E   P           ++TH
Sbjct: 651  YVDAAEEETILIAMTPEDLVNARTAHSKHELVRDRAAHNLESFDPAARIKSTVWSQQYTH 710

Query: 683  CELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYP 742
             E+  S +LG+   I+PF +H+ + R  YQS     QA+G   TN  +R+DT+ + L+YP
Sbjct: 711  MEIHPSMILGVCASIVPFPDHNQSPRNTYQS-AMGKQAMGVCLTNYQLRMDTMVNVLYYP 769

Query: 743  QRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLER 802
            Q+PL  T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++S++R
Sbjct: 770  QKPLATTRSME-----------YLKFSELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDR 818

Query: 803  GMFRSEHIRSYKAEVDNKEMQ--VKRRSSDDMVNFGKIQSKIG---RVDSLDDDGFPFIG 857
            G+FRS + RSY    D ++M+  VK  + +       ++ K G   R   LD DG    G
Sbjct: 819  GLFRSLYFRSY---TDTEKMKGMVKAETIEKPDRNETLRMKHGTGDRYAKLDVDGLVAPG 875

Query: 858  ANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKN 902
             N+   DI+IGK A                +  D S  LK TE+G+V +V+LS+N +G  
Sbjct: 876  TNVNGDDILIGKTAPLPEDSEELGQRTQLHTKRDISTPLKSTEQGVVDQVMLSTNGEGNM 935

Query: 903  FSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQT 962
            F  + +R  R P +GDKF+S HGQKG +G    QE+ PFT +G+VPDI+INPHA PSR T
Sbjct: 936  FVKIRVRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGLVPDIIINPHAIPSRMT 995

Query: 963  PGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGR 1022
             G L+E  L K ++ L     +G +  ATPF   +V+A+++ L   G+   G E LY G 
Sbjct: 996  IGHLVECLLSK-VSTL-----TGAEGDATPFTELTVEAVSKVLRAKGYQSRGFEVLYHGH 1049

Query: 1023 TGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1082
            TG  +++ ++ GPT+YQRL HM +DK+  R  GP+  LTRQPV  R R GG++FGEMERD
Sbjct: 1050 TGRKLQAQVYFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEMERD 1109

Query: 1083 CLIAHGAAANLHERLFTLSDSYQMHICRKC--KNVANVIQRVVGGGRKVRGPYCRICDSG 1140
            C+I+HG A  L ER++  SD++++H+C  C    VAN+         K +  YC +C + 
Sbjct: 1110 CMISHGIAGFLKERMYDSSDAFRIHVCDVCGLMAVANL---------KKQEFYCSVCRNS 1160

Query: 1141 DDIVKANVPYGAKLLCQELFSMGITLKF 1168
              I +  +PY AKLL QEL +M I  + 
Sbjct: 1161 TQISQVYIPYAAKLLFQELQAMNIACRM 1188


>gi|119177838|ref|XP_001240650.1| hypothetical protein CIMG_07813 [Coccidioides immitis RS]
          Length = 1152

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 393/1144 (34%), Positives = 577/1144 (50%), Gaps = 141/1144 (12%)

Query: 82   RYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKR--- 138
            R   ++FG V L +PS   G+G     M P+ ARL+N+TY+S + + +  ++   +    
Sbjct: 30   RRYELKFGTVMLARPSMTEGDGATSI-MLPQEARLRNLTYASPLYLGITKKIAEGRERSL 88

Query: 139  -----------VTSDKFKTGREQYIQ---KEVLSDET--TNIIIGRIPVMVKSDLCWMKG 182
                          D+ +  R  Y+Q   K +  DE    NI IG++P+M+KS  C +K 
Sbjct: 89   AERDEDDDEPDAKGDEERRARGTYLQWEPKALPEDEADEENIFIGKMPIMLKSKYCILKD 148

Query: 183  VEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSE 231
            + +       +C +D GGYFII G+EKV +AQE+     + V      +   +    +S 
Sbjct: 149  LGEHALYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSA 208

Query: 232  NKRNRLIVRLVDMSKF---EDIKGG--EKVLSVY-FLSTEIPIWILFFALGVSSDKEIVN 285
             ++   I+  + +  F   +  KGG    + S   ++ T+IPI ++F ALGV SD++I+N
Sbjct: 209  VEKGSRILSQLSIKLFAKGDSSKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDEDILN 268

Query: 286  LIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES----TEE 341
             I +   D  +L +L   I +     D       AL ++ K     T    E       +
Sbjct: 269  HICYDRNDTPMLEMLKPCIEEGFVIQDR----EVALDFISKRGSSPTSMNHEKRVRYARD 324

Query: 342  CMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLE 397
             +     P +  ++    +KA FLGYMV  LLQ   GRR  D+RD F  KRL+LAG LL 
Sbjct: 325  IIQKEFLPHISQSEGSETRKAFFLGYMVHKLLQCALGRRDVDDRDHFGKKRLDLAGPLLA 384

Query: 398  RELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRT 457
               +V      K + K +QR +  +R +  +   + AS LT GL  A +TG W    K  
Sbjct: 385  NLFRVLFMRLTKDLYKYVQRCVETNRQLY-LNIGVKASTLTGGLKYALATGNWGEQKKAA 443

Query: 458  ERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENC 517
               +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ C
Sbjct: 444  SSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQAC 503

Query: 518  GLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDS 576
            GLVKNL +   ++  +  EPI + +    ME L +          K+FV+G W+GV +D 
Sbjct: 504  GLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVSPNSTKIFVNGVWVGVHRDP 563

Query: 577  LSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------- 628
               VS ++  RRR  +  +V +  D    E +IF DAGR+ RPL VV+N  K        
Sbjct: 564  SHLVSTVQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSENSGSLV 623

Query: 629  -----IKSLEG---------------KNYTFQALLDHGIIELVGTEEEE----------- 657
                 I  LE                + Y +  L+  G++E V  EEEE           
Sbjct: 624  LTKEHIHKLEADKEIPADLDPEERRERYYGWDGLVKSGVVEYVDAEEEETIMIVMSPEDL 683

Query: 658  DCCTAWGIKYLLK-DIED----------KKPIKFTHCELDMSFLLGLSCGIIPFANHDHA 706
            +    +   Y+ + D  D          +K   +THCE+  S +LG+   IIPF +H+ +
Sbjct: 684  EVSKQYQAGYIPEEDTSDPNRRVRSKLSQKAHTWTHCEIHPSMILGICASIIPFPDHNQS 743

Query: 707  RRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHIL 766
             R  YQS     QA+G   TN   R++T+++ L+YPQ+PL  T   +            L
Sbjct: 744  PRNTYQS-AMGKQAMGVFLTNFDQRMETMANILYYPQKPLATTRSME-----------FL 791

Query: 767  PRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKR 826
               EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y        + V  
Sbjct: 792  KFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIGLTVVE 851

Query: 827  RSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD-------------- 872
            R    M +   ++ K G  D +DDDG    G  +   DI+IGK A               
Sbjct: 852  RFEKPMRS-DTLRMKHGTYDKVDDDGIVAPGVRVSGEDIIIGKTAPLAPESEELGQRTKQ 910

Query: 873  -SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLG 931
             +  D S  L+ TE G+V +V++S++++   F  V +R  + P +GDKF+S HGQKG +G
Sbjct: 911  HTKLDVSTPLRSTESGIVDQVLVSTSNEDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIG 970

Query: 932  FLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRY-- 989
                QE+ PFT +GIVPD++INPHA PSR T   L+E  L K          S L+ Y  
Sbjct: 971  VTFRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSK---------VSSLRGYEG 1021

Query: 990  -ATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDK 1048
             ATPF   +VD+++  L   G+   G E +Y+G TG  + + IF+GPT+YQRL HM +DK
Sbjct: 1022 DATPFTDVTVDSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQIFLGPTYYQRLRHMVDDK 1081

Query: 1049 VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHI 1108
            +  R  GP   LTRQPV  R R GG++FGEMERDC+IAHGA+A L ERLF +SD +++HI
Sbjct: 1082 IHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFDVSDPFRVHI 1141

Query: 1109 CRKC 1112
            C  C
Sbjct: 1142 CDIC 1145


>gi|426344421|ref|XP_004038768.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Gorilla
            gorilla gorilla]
          Length = 1097

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 407/1190 (34%), Positives = 590/1190 (49%), Gaps = 173/1190 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPSKKGEGEWRYASMRFGQ 90
            S+F+E GLV  Q++S++EFI+  +Q+   D+    +       S + E   RY  ++F Q
Sbjct: 19   SYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEEPPRYL-LKFEQ 77

Query: 91   VTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
            + L KP+ +  +G     M P  ARL+N+TYS+ + V +          T    K G EQ
Sbjct: 78   IYLSKPTHWERDGAPS-PMMPNEARLRNLTYSAPLYVDI----------TKTVIKEGEEQ 126

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFIIKGAEKV 204
                  L  +     IG+IP+M++S  C + G+      E  +C  D GGYFII G+EKV
Sbjct: 127  ------LQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKV 180

Query: 205  FVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLST 264
             +AQE++    ++V        AY  E +           S  E+        S    ST
Sbjct: 181  LIAQEKMATNTVYVFAKKDSKYAYTGECR-----------SCLEN--------SSRPTST 221

Query: 265  EIPIWILFFALGVSSDKE------IVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGR 318
               IW+   A G    K+      IV  + +  ++  I+ I+F ++         F   R
Sbjct: 222  ---IWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPII-IVFRALG--------FVSDR 269

Query: 319  NALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKC 378
            + L+++                     Y F       +    + YMV  LL A  GRR+ 
Sbjct: 270  DILEHI--------------------IYDFED----PEMMEMVIYMVHRLLLAALGRREL 305

Query: 379  DNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRD--LYGDRTVR-----PIEYY 431
            D+RD + NKRL+LAG LL        A   + M K L ++  +Y  + +       +E  
Sbjct: 306  DDRDHYGNKRLDLAGPLL--------AFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELA 357

Query: 432  LDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGK 491
            +   I+++GL  + +TG W    K  +  +G+   L R     TL  LRR    +   GK
Sbjct: 358  IKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGK 417

Query: 492  VGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLA 550
            +   R  H + WG +C   TP+G   GLVKNL +   +S  S   PI E L    ME L 
Sbjct: 418  LAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 477

Query: 551  DDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRI 609
            + +  ++    K+FV+G W+G+ KD    ++ LR+ RR+ ++  ++V + RD  + E+RI
Sbjct: 478  EISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRI 537

Query: 610  FMDAGRILRPLLVVE---------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCC 660
            + DAGRI RPLL+VE         ++ ++K  E  NY++Q L+  G++E + T EEE   
Sbjct: 538  YTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVM 597

Query: 661  TAWGIKYLLKDIEDKKPI---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHS 717
             A        D+++K+      +THCE+  S +LG+   IIPF +H+ + R  YQS    
Sbjct: 598  LAMTPD----DLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMG 652

Query: 718  SQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNA 777
             QA+G   TN  +R+DTL+H L+YPQ+PL  T   +            L   EL  G N+
Sbjct: 653  KQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSME-----------YLRFRELPAGINS 701

Query: 778  IVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK 837
            IVA+  + GYNQEDS++MNR++++RG FRS   RSYK        Q  ++  D    F K
Sbjct: 702  IVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKE-------QESKKGFDQEEVFEK 754

Query: 838  IQSKIGR------VDSLDDDGFPFIGANLQSGDIVIGKYAD---------------SGAD 876
               +  +       D LDDDG    G  +   D++IGK                  +  D
Sbjct: 755  PTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRD 814

Query: 877  HSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ 936
             S  L+ +E G+V +V+++ N +G  F  + +R VR P +GDKF+S HGQKG  G    Q
Sbjct: 815  CSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQ 874

Query: 937  ENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP 996
            E+ PFT +GI PDI+INPHA PSR T G L+E   GK   +  KG        ATPF   
Sbjct: 875  EDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGEIGD----ATPFNDA 928

Query: 997  -SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTG 1055
             +V  I+  L   G+   G E LY+G TG  + S IFIGPT+YQRL HM +DK+  R  G
Sbjct: 929  VNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARG 988

Query: 1056 PVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNV 1115
            P+  L RQP+  R R GG++FGEMERDC IAHGAA  L ERLF  SD YQ+H+C  C  +
Sbjct: 989  PIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIM 1048

Query: 1116 ANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
            A           +     CR C +   I    +PY  KLL QEL SM I 
Sbjct: 1049 AI-------ANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIA 1091


>gi|328777078|ref|XP_003249277.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB2 [Apis mellifera]
          Length = 1154

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 398/1222 (32%), Positives = 612/1222 (50%), Gaps = 155/1222 (12%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPS 74
            ++  +  +  C     ++F+E GLV  Q++S++EFI+  +Q+   DS    +       S
Sbjct: 16   EISSKLWQEACWIVINAYFDEKGLVRQQLDSFDEFIEMSVQRIVEDSPQIDLQAEAQHTS 75

Query: 75   KKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVY 134
             + E   R+  ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +     
Sbjct: 76   GEIENPVRHL-LKFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLTYSAPLYVDI----- 128

Query: 135  TQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDC 188
                 T    K G      ++ +  +     IG+IP+M++S  C + G+      E  +C
Sbjct: 129  -----TKTIVKDG------EDPIETQHQKTFIGKIPIMLRSKYCLLAGLSDRDLTELNEC 177

Query: 189  DFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR---------NRLIV 239
              D GGYFII G+EKV +AQE++    ++V +      AYKSE +          + L +
Sbjct: 178  PLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAYKSEIRSCLEHSSRPTSTLWI 237

Query: 240  RLVDMSKFEDIKG--GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
             ++  S     K   G++++++  ++  EIPI I+F ALG  +D++I+  I +  +D  +
Sbjct: 238  NMMAKSGASIKKSAIGQRIIAIIPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 297

Query: 297  LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
            + ++  S+ +A      N    F   R A         +KY  ++++    P     + C
Sbjct: 298  MEMVKPSLDEAFVIQEQNVALNFIGTRGARPGVTKEKRIKYAREILQKEMLPHVGIRDFC 357

Query: 343  MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                         +KA FL                     +F NKRL+LAG LL    + 
Sbjct: 358  -----------ETKKAYFL---------------------EFINKRLDLAGPLLAFXFRG 385

Query: 403  HIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISG 462
               +  K +    Q+ +   +    +E  +   I+T+GL  + +TG W    K  +  +G
Sbjct: 386  LFKNLMKEVRLYAQKFIDRGKDFN-LELAIKTKIITDGLRYSLATGNWGDQKKAHQARAG 444

Query: 463  IVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKN 522
            +   L R     TL  LRR    +   GK+   R  H + WG +C   TP+G   GLVKN
Sbjct: 445  VSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKN 504

Query: 523  LGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVS 581
            L +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    ++
Sbjct: 505  LALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPDQLMA 564

Query: 582  ELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVE---------NMGKIKS 631
             LR+ RR+ ++  ++V + RD    E+RI+ DAGRI RPLL+VE         ++  +K 
Sbjct: 565  TLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRISRPLLIVEGQNLLLKKRHIDMLKE 624

Query: 632  LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLL 691
             +  N  +Q L+  G++E + T EEE    A   + L ++ E      +THCE+  + +L
Sbjct: 625  RDYNNDGWQELVGSGVVEYIDTLEEETVMIAMSPEDLRQEKEYAYCTTYTHCEIHPAMIL 684

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YP +PL  T  
Sbjct: 685  GVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRS 743

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
             +            L   EL  G N+IVA+  + GYNQEDS+++N +++ERG FRS   R
Sbjct: 744  ME-----------YLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYR 792

Query: 812  SYK----AEVDNKEMQVK---RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGD 864
            SYK      + ++E Q +   R++   M N           D LDDDG    G  +   D
Sbjct: 793  SYKDSESKRIGDQEEQFEKPTRQTCQGMRN--------AIYDKLDDDGIIAPGIRVSGDD 844

Query: 865  IVIGKY-----ADSGADHSIK----------LKHTERGMVQKVVLSSNDDGKNFSVVSLR 909
            +VIGK      AD   D + K          L+++E G+V +V+L+ N +G  F  + +R
Sbjct: 845  VVIGKTITLPEADDELDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVR 904

Query: 910  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEA 969
             VR P +GDKF+S HGQKG  G    QE+ PF+ +G+ PDI+INPHA PSR T G L+E 
Sbjct: 905  SVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFSCEGLTPDIIINPHAIPSRMTIGHLIEC 964

Query: 970  ALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVR 1028
              GK   +  KG        ATPF    +V  I+  L   G+   G E +Y+G TG  + 
Sbjct: 965  IQGK--VSANKGEIGD----ATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKIN 1018

Query: 1029 SLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG 1088
            + +F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC I+HG
Sbjct: 1019 AQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHG 1078

Query: 1089 AAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKA 1146
            AA  L ERLF +SD Y++HIC  C    +AN+               C+ C +   I + 
Sbjct: 1079 AAQFLRERLFEVSDPYRIHICNFCGLIAIANLRNNTFE---------CKGCKNKTQISQI 1129

Query: 1147 NVPYGAKLLCQELFSMGITLKF 1168
             +PY AKLL QEL +M I  + 
Sbjct: 1130 RLPYAAKLLFQELMAMNIAPRL 1151


>gi|167519879|ref|XP_001744279.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777365|gb|EDQ90982.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1166

 Score =  572 bits (1474), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 390/1210 (32%), Positives = 594/1210 (49%), Gaps = 124/1210 (10%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYAS 85
            C +   ++F E GLV  Q++S++ FI   +QK   +           P  + +G  +Y S
Sbjct: 13   CWEVINAYFREKGLVRQQLDSFDHFITYTVQKIIKN----------SPPIEVQGRLQYLS 62

Query: 86   ----------MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT 135
                      + FGQ     P     +G  +H +FP   RL+N+TY S M+ ++   V  
Sbjct: 63   NEIEEPPKHTISFGQAGFALPQHKEEDGNYDH-VFPNDCRLRNLTYQSLMQCEITHTVEQ 121

Query: 136  QKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK-------GDC 188
            +   T +                  TT  ++G++P+M++S  C +  +E         +C
Sbjct: 122  KNPETGEV----------------TTTPALLGKVPMMLRSKYCTLNKMETFRDFYDINEC 165

Query: 189  DFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWT----VAYKSENKRNRLIV 239
              D GGYFII G+EKV +AQE++    ++V     S  M  T    +   S    + ++V
Sbjct: 166  PLDPGGYFIINGSEKVLIAQEKMAGNTVYVFEKKDSKHMFVTEMRSIVEDSNRPTSTMMV 225

Query: 240  RLV----DMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCS 295
            +++      +K     G     S+ ++  +IP+ +LF ALG   D+ I+  I +  +D  
Sbjct: 226  KMLRGGSGGTKGRATFGRVIHASLPYIRQDIPVVVLFRALGFEDDRSILEHIIYDFDDME 285

Query: 296  ILNILFASIHDA----DNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSL 351
            ++ +L  S+ +A      +      GR ++  V            +  ++ M  ++    
Sbjct: 286  MMELLKPSLDEAFVVQTREVALDLIGRRSMAAVGMSKDMRVRFARDILQKEMLPHIGVGP 345

Query: 352  HGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRM 411
               + KA FLGYMV   LQA   RR+ D+RD + NKRL+LAG L+    +       K++
Sbjct: 346  QCEQAKAFFLGYMVHRTLQAALRRRELDDRDHYGNKRLDLAGSLVAYLFRTLFKQLTKKL 405

Query: 412  AKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRAN 471
             + +  DL        +   LD  IL +GL  + +TG W    K  E  +G+   L R  
Sbjct: 406  TRKVT-DLVNRNHKFMVITLLDVEILGSGLRYSLATGNWGDQKKAHEARAGVSQVLNRLT 464

Query: 472  PLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTG-LVS 530
               TL  LRR    +  TGK+   R  H +HWG IC   TP+G   GLVKNL +   L  
Sbjct: 465  FASTLSHLRRLNSPIDRTGKIAKPRQLHNTHWGYICPAETPEGHAVGLVKNLSLMASLTV 524

Query: 531  TSILEPIFEQLFNSGMEKLADDASYS-LGGKFKVFVDGDWIGVCKDSLSFVSELRRK--R 587
             S   P+ + L  SG++ L    S S +    KVFV+G+W+G+       V+ +R+    
Sbjct: 525  GSDDTPVHDLLGASGLDYLDRLPSRSAIKTATKVFVNGNWVGIHSHPDELVTTMRQYLLD 584

Query: 588  RRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN-----------MGKIKSLEGKN 636
                + ++V I R+  + EV I  D+GR  RPLL+V                + +L    
Sbjct: 585  AAHSVASEVSIFRNIREREVHIVTDSGRTTRPLLIVNKDDANRCRFALKNSHVMALRNDQ 644

Query: 637  YTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCG 696
             ++  L+  G++E +   EEE    A     L    E      +THCE+  S +L +   
Sbjct: 645  MSWTHLVQRGVVEYIDVNEEETTMIAMDQGTLE---ETSYCNTYTHCEIHPSMILSICAS 701

Query: 697  IIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLG 756
            IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YPQRPL +T   +   
Sbjct: 702  IIPFPDHNQSPRNTYQSAM-GKQAMGVYITNFHVRMDTLAHVLYYPQRPLVQTRSMN--- 757

Query: 757  KPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAE 816
                     L   EL  G NAIV +  + GYNQEDS++MNR S+ERG+FRS   RSY A 
Sbjct: 758  --------YLRFAELPAGINAIVGIMTYTGYNQEDSVIMNRYSVERGLFRSVFYRSYAAS 809

Query: 817  VDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD---- 872
              ++  ++ +       N   I  +    D L+DDG    G  +   D ++G+  +    
Sbjct: 810  EHSERGEIIKIDKPSRENC--IGMRRANYDKLEDDGIVAPGIRVSGDDAIVGRLLELPEA 867

Query: 873  ----SGA-----DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSM 923
                SG      D S+ L+ +E G++  V++S N  G+ F  + +R VR+P +GDKF+S 
Sbjct: 868  TRQASGGRFEKRDKSLFLRSSESGIIDGVMISVNQKGEKFVKIRVRSVRTPQIGDKFASR 927

Query: 924  HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGIC 983
            HGQKG  G   +QE+ PF   G+VPDI++NPHA PSR T G L+E  LGK  +       
Sbjct: 928  HGQKGTCGMQYAQEDMPFAASGVVPDIIVNPHAIPSRMTIGHLIECLLGKSASH------ 981

Query: 984  SGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIH 1043
            SG    ATPF   +V  + + L    F ++G E +Y+G TG  +++ +F+GPT+YQRL H
Sbjct: 982  SGTIGDATPFTKVNVTDVADILEGYNFQRYGNEVMYNGFTGRKMQAQVFLGPTYYQRLKH 1041

Query: 1044 MSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDS 1103
            M +DK+  R  GP+  LTRQP+  R R GG++FGEMERDC+IAHGAA  L ERLF +SD 
Sbjct: 1042 MVDDKIHARARGPLQNLTRQPMEGRSRDGGLRFGEMERDCMIAHGAAQFLRERLFEVSDP 1101

Query: 1104 YQMHICRKC--KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFS 1161
            Y +H+C  C    VA + +             C  C +   + +  +PY  KLL QEL +
Sbjct: 1102 YSLHVCDVCGLPCVAKLEKNEFE---------CTRCRNSTRVSRIRLPYACKLLFQELMT 1152

Query: 1162 MGITLKFDTE 1171
            M +  +  T+
Sbjct: 1153 MSVVPRMMTD 1162


>gi|160331027|ref|XP_001712221.1| rpb2 [Hemiselmis andersenii]
 gi|159765668|gb|ABW97896.1| rpb2 [Hemiselmis andersenii]
          Length = 1222

 Score =  570 bits (1468), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 402/1243 (32%), Positives = 602/1243 (48%), Gaps = 158/1243 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYA-SMRFGQ 90
            SFF E  LV  Q++S+NEFI+N +Q   D     +++  +D  K  E +      +RFGQ
Sbjct: 21   SFFKENNLVRQQLDSFNEFIQNTMQDIIDDIPPIVIKTEFDKFKSSETKKSLKLILRFGQ 80

Query: 91   VTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQ-FQVYTQKRVTSDKFKTGRE 149
            + L KP+F   NG   H + P  ARL+N+TYSS +   +    +   + +T +       
Sbjct: 81   LHLSKPTFIEENG-TTHTLLPNEARLRNLTYSSPLYCDISTITLNITEELTGE------- 132

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCW------MKGVEKGDCDFDHGGYFI------ 197
              I++  L D+   I++GRIP+MVKS  C       M  +  G+C  D GGYFI      
Sbjct: 133  --IKENFLKDDHQKILLGRIPIMVKSRFCVLDKLLPMDLIRIGECPIDPGGYFIINGSEK 190

Query: 198  -IKGAEKVFVAQEQICLKRLWVSNSMG-----------------------WT-------- 225
             I G E++      I  K+    NS                         W+        
Sbjct: 191  VIVGQEQLAWNYVYIFSKKETTKNSSKLYFYTKKNLLYFAECRSVAEFGRWSPSLLTVKV 250

Query: 226  --VAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVY-FLSTEIPIWILFFALGVSSDKE 282
                +  +NK N+      + +      GG  + ++      +IP+  +F ALG  ++ E
Sbjct: 251  CITVFPKKNKINKQSSSSTNSAL--HFYGGLYLRAILPLFKKDIPVTWIFKALGFENETE 308

Query: 283  IVNLIDFTCEDCSILNILFASIHDADNKCDE-------FRKGRNALKYVDKLI-KGTTFP 334
            I+  I +  ED  ++  +  S+ D      E             AL  + + I +G    
Sbjct: 309  ILRHICYNDEDEELIESIRYSLEDDKLMASETFSNISSILDQETALAAIGQHISRGAQSL 368

Query: 335  PGESTEECMNTYLFPSLHGTKQ-----KARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRL 389
              +   E +     P + G  Q     K  F GY++  L+    G+R  D+RD + +KRL
Sbjct: 369  RIKHAYETLQKEFLPHV-GIGQGFELRKGFFFGYIINKLMATQIGKRATDDRDHYGHKRL 427

Query: 390  ELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGA 449
            ++AG LL    +  +    K +  +LQR     +    I  ++  S LT G+  A +TG 
Sbjct: 428  DVAGPLLSVLFRQLLGKVIKDLRTSLQRKSNLGKNFNQISDFIKPSFLTTGIQYALATGN 487

Query: 450  WSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFL 509
            W    K+  R +G+   L R +   TL  LRR        G +   R  H SHWG IC  
Sbjct: 488  WGTD-KQASR-TGVSQVLNRLSFSSTLSHLRRLNSPSGKDGNLTKPRQLHNSHWGLICPA 545

Query: 510  STPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGD 568
             TP+G +CGLV+NL ++  V+  S   PI E L    +E L+D     L   +K+FV+G 
Sbjct: 546  ETPEGHSCGLVRNLALSAFVTIGSSTLPIMEFLEEFKIENLSDVKLEKLKFSYKIFVNGC 605

Query: 569  WIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVV----- 623
            WIG+    L+ V  LR+ RR   L  ++ I  D  + E+RI  D+GRI RPL+V+     
Sbjct: 606  WIGIHDKPLNLVKNLRKGRRLGFLREEISISFDIKEKEIRISTDSGRICRPLIVLNEKLS 665

Query: 624  -----------------ENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIK 666
                              ++ KIK+    +++F  LL  GI+E +  EEEE C  +  +K
Sbjct: 666  KNTNGTEIKTFLPLLKKSHLSKIKN--DPSFSFHDLLKEGIVEFIDAEEEEICLISMFLK 723

Query: 667  YLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTT 726
               +       I++THCE+  S +LG+    IPF++H+ + R  YQ+     QAIG  + 
Sbjct: 724  ETFQKKFRSLNIEYTHCEIHPSLILGVCGSFIPFSDHNQSPRNTYQAA-MGKQAIGINSL 782

Query: 727  NPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLG 786
            N   R+DT++H L+YPQ PL  T     +    +            NG N+IVA+  + G
Sbjct: 783  NFQFRMDTMAHILYYPQTPLVVTRAMKFMNYKNFP-----------NGINSIVAIACYGG 831

Query: 787  YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK----IQSKI 842
            YNQEDS++M++ +++RG+FRS   R Y+ E   K   +K     ++    K    I  K 
Sbjct: 832  YNQEDSIIMSQDAIDRGLFRSVFYRCYRDEEKTKFGGLK-----EIFEIPKFEDCIGCKT 886

Query: 843  GRVDSLDDDGFPFIGANLQSGDIVIGKYADSG------------------ADHSIKLKHT 884
            G    LD DG    G  +   DI+IGK                        D S   +  
Sbjct: 887  GSYQKLDLDGLVSEGTRVSGDDIIIGKTVPYDFSKIKSSLAPLEKTLKFKKDASTAARSF 946

Query: 885  ERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQ 944
            E G+V KV++ ++D G     + +R VR P +GDKF+S HGQKG++G L  Q + PFT  
Sbjct: 947  ESGVVDKVMIGTSDLGTKLVKIRIRSVRIPQIGDKFASRHGQKGIVGMLYKQVDLPFTKD 1006

Query: 945  GIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQ 1004
            GI+PDI++NPHA PSR T G LLE  L K ++ALG     G++   +PF   +V+ I+++
Sbjct: 1007 GIIPDIIMNPHAIPSRMTIGHLLEGLLSK-VSALG-----GMEGDGSPFCNITVEKISKK 1060

Query: 1005 LHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQP 1064
            L    F K G E + +G TG  + ++IFIGPT+YQRL HM +DK+  R  GPV  LTRQP
Sbjct: 1061 LESLNFEKNGWEIMRNGETGNNLNAMIFIGPTYYQRLKHMVDDKIHSRARGPVQILTRQP 1120

Query: 1065 VADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK--NVANVIQRV 1122
            V  R R GG++FGEMERDC+++HGA+  L +RL   SD++ + +C  C    +AN  +R+
Sbjct: 1121 VEGRSRDGGLRFGEMERDCMMSHGASIFLKDRLMDQSDAFSIFLCDLCGLIAIANPKKRI 1180

Query: 1123 VGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
                       CR C + + I    +PY  KLL QEL +M I 
Sbjct: 1181 FE---------CRSCLNRNSISLVKIPYACKLLFQELMAMAIA 1214


>gi|124028419|ref|YP_001013739.1| DNA-directed RNA polymerase subunit B [Hyperthermus butylicus DSM
            5456]
 gi|123979113|gb|ABM81394.1| DNA-directed RNA polymerase subunit B [Hyperthermus butylicus DSM
            5456]
          Length = 1138

 Score =  569 bits (1467), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 415/1202 (34%), Positives = 595/1202 (49%), Gaps = 164/1202 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F  EYGLV   I+SYN FI+  L++    FG TI  P            R   +R   V
Sbjct: 18   AFIEEYGLVKQHIDSYNRFIEKELKEIVKEFG-TISTPR-----------REYEVRIVDV 65

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             L +P     +G  EH + P   R++++TY++ +K KV                      
Sbjct: 66   ELGEPIVIESDGS-EHPVTPMECRIRDLTYAAPIKAKV---------------------V 103

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDL---------------CWMKGVEKGDCDFDHGGYF 196
            I +  +  E   II+G +PVM++S                 C  K +E G+   D GGYF
Sbjct: 104  IVENGIEREAEEIILGFLPVMLRSKADPLARCMYEGKSWKECEQKLIEAGEDPRDPGGYF 163

Query: 197  IIKGAEKVFVAQEQICLKRLWVSNSMGWTVA--YKSENKRNRLIVRLVDMSKFEDIKGGE 254
            II G+E+V V QE   L R+ V  +   T +  Y ++       VR   +  +   K G 
Sbjct: 164  IINGSERVIVIQEDQALNRILVGKARAGTASALYTAKVISAHAGVRYQVILDYH--KDGT 221

Query: 255  KVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEF 314
              +S+    ++IP  IL  ALG+ SD++IV  +     D  I  +L  S+  A       
Sbjct: 222  LHVSMSRALSKIPFVILMRALGLESDRDIVLAV---SPDPQIQQMLIPSLEQARA----I 274

Query: 315  RKGRNALKYVDKLIKGTTFPPGES----TEECMNTYLFPSLHGTK-----QKARFLGYMV 365
                +AL YV    +     P E      E  ++T LFP + GT      +KA FLG M 
Sbjct: 275  NTVEDALDYVGSRFREGLAKPREQRIRVAERILDTILFPHI-GTSPKDRIRKALFLGQMA 333

Query: 366  KCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTV 425
              LL+  +GRRK D++D + NKR+ LAG+L+    ++ +      + + L++     R +
Sbjct: 334  AKLLEYVAGRRKEDDKDHYANKRVLLAGDLIAMVFRIAMRALAYDIRQQLEKLRARGRHI 393

Query: 426  RPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQ 485
              +   + + I+TN L  A +TG W  P +RT    G+   L R N L  L  LRR   Q
Sbjct: 394  S-LRMIIRSDIITNRLREALATGNW--PGQRT----GVSQILDRTNWLSMLSHLRRVVSQ 446

Query: 486  VQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFNSG 545
            +  T    +AR  H + WG+IC   TP+G NCGLVKNL +   VS  + +   E+L  S 
Sbjct: 447  LSRTQPHFEARDVHGTQWGRICPFETPEGPNCGLVKNLALMAYVSAGVDDKDVEKLLYSM 506

Query: 546  --------MEKLADDASY--SLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQ 595
                     E++     Y        KVF++G  IG   D      ELR+ RR  +L  +
Sbjct: 507  GVRDAVELFEEVRKQGYYPPEYIKWSKVFLNGRLIGYHPDGEKLAEELRKLRRSGKLHYE 566

Query: 596  VEIK--RDELQSEVRIFMDAGRILRPLLVVENMGKI-------KSLEGKNYTFQALLDHG 646
            V +   R E  +EV I  D GRI+RP+ VVE+ GK+       + L    + F  L+ +G
Sbjct: 567  VSVSVYRTETINEVYINTDPGRIMRPVFVVES-GKLLYRPEHAEKLRKGEWRFSDLVRNG 625

Query: 647  IIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHA 706
            I+E +  EEEE+        Y+  + ED  P + TH E+  + + G++   IP+A H+ +
Sbjct: 626  IVEFLDAEEEENT-------YIALNPEDLTP-EHTHMEIWPAGIFGVTASTIPYAEHNQS 677

Query: 707  RRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHIL 766
             R  YQ+   + QA+G    N  IRVDT SH L YP++PL +T   + +G     +N   
Sbjct: 678  PRNTYQAAM-AKQALGLYAANFQIRVDTRSHLLHYPEKPLVQTRALELMG-----YND-- 729

Query: 767  PRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKR 826
             RP    GQN +VAV    GYN ED+++MN++S++RG+ RS   R Y  E        +R
Sbjct: 730  -RP---AGQNMVVAVMSFTGYNIEDAVIMNKSSIDRGLARSTFFRLYATE--------ER 777

Query: 827  RSSDDMVNFGKIQSKIGRVD---------SLDDDGFPFIGANLQSGDIVIGK-------- 869
            R    + +  KI+     V+          LD DG       ++ G+++IGK        
Sbjct: 778  RYPGGLSD--KIEIPEANVEGSKPPEMYKKLDADGIISPEVEVKGGEVLIGKTSPPRFME 835

Query: 870  -YADSGA------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSS 922
             Y + G       D S+ ++H E+G+V  V+++ N +G     V +R  R P LGDKF+S
Sbjct: 836  EYREFGTVTVRKRDTSVTMRHGEKGVVDTVIITENIEGYKLVKVRVRDQRIPELGDKFAS 895

Query: 923  MHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGI 982
             HGQKGV+G L  Q + PFT  GI PD++INPHAFPSR T GQL E   GK  AA+    
Sbjct: 896  RHGQKGVIGMLIPQYDMPFTEDGITPDLIINPHAFPSRMTLGQLFETIAGK-YAAIYARF 954

Query: 983  CSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLI 1042
              G     TPFA  S++ +  +L + G++  GTE +YDGRTGEM+R+ I IG  +YQ+L 
Sbjct: 955  VDG-----TPFAKESIENLRIELLKTGYAPDGTEIMYDGRTGEMIRTPILIGLVYYQKLH 1009

Query: 1043 HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSD 1102
            HM  DK+  R  GPV  LTRQP   R R GG++FGEMERDCL+ HGAA  L ER+   SD
Sbjct: 1010 HMVADKIHARARGPVQVLTRQPTEGRAREGGLRFGEMERDCLVGHGAAMLLRERMLESSD 1069

Query: 1103 SYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSM 1162
             Y +++C  C ++A          R  RG  C +      I    VPY  KLL QEL SM
Sbjct: 1070 RYVLYVCELCGHIAWF-------DRNKRGYICPVHGDKGKIAAVIVPYAFKLLLQELMSM 1122

Query: 1163 GI 1164
             I
Sbjct: 1123 CI 1124


>gi|440296149|gb|ELP88990.1| DNA-directed RNA polymerase II subunit RPB2, putative [Entamoeba
            invadens IP1]
          Length = 1180

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 386/1210 (31%), Positives = 603/1210 (49%), Gaps = 129/1210 (10%)

Query: 34   FNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTL 93
            F E GLV  Q++S+N F+K  +Q    +          D  +    +    ++ F +   
Sbjct: 29   FRENGLVKQQLSSFNNFVKR-VQDIVKTDTFKFEVNNSDTLRVNPADEESHTLEFDETKY 87

Query: 94   DKPSF-FAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYI 152
              P    + N   +  +FP  AR++ +TY+S +K+ V+  +Y   ++  +K         
Sbjct: 88   RYPQIKTSPNSNVKEKIFPHEARIRGLTYASELKINVKDTIYRGGKLVDEK--------- 138

Query: 153  QKEVLSDETTNII-IGRIPVMVKSDLCWMKGVEK-------GDCDFDHGGYFIIKGAEKV 204
                    T++   +  IP M+KS +C +  + K        +C F+ GGYF++KG+EKV
Sbjct: 139  --------TSDFFDLASIPAMLKSKICRLVSIVKLNDIIQSDECQFEQGGYFVVKGSEKV 190

Query: 205  FVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVR--------LVDMSKFEDIKGGEKV 256
             +AQE++    + V         Y  E   N L +          +D  K +++    KV
Sbjct: 191  VIAQEKMSPNTVLVFEGSDMA-KYPFEGNINSLAMNDEVRSHKIRMDFPKNQEMNKDLKV 249

Query: 257  ----LSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDAD---- 308
                L++  +  ++P+ +LF ALG  +D++IV+ I F  +D  + NI+  +I   +    
Sbjct: 250  KVPMLTMSRMMCDVPLVLLFVALGYETDEKIVDAICFDEKDNEMYNIVTTAIQANEYTTV 309

Query: 309  NKCDEF--RKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSL--HGTKQKARFLGYM 364
             K  E+  R  + + K  D+++              + T L P +     + KA FLGYM
Sbjct: 310  EKAREWIGRNSKRSNKEGDEIVTENIEKMRRDGTSKLKTDLLPHIGVDNFESKAYFLGYM 369

Query: 365  VKCLLQAYSGRRKCDNRDDFRNKRLELAG----ELLERELKVHIAHARKRMAKALQRDLY 420
                L  Y+G+R  D+RD    KR+ + G    EL +  LK    +AR ++     +D+ 
Sbjct: 370  TNHFLSVYTGKRNGDDRDHLARKRMLMTGGLMMELFKNALKKLTKYARNKI-----QDIV 424

Query: 421  GDRTVRPIEY--YLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVD 478
              +    I+Y    ++ I+T+   +A STG W  P  +  R  G+   L R      L  
Sbjct: 425  SHKKSDNIDYGKVYNSKIITDDCKKALSTGNWPQPGGKEAR-HGVAQVLNRITFTSALAY 483

Query: 479  LRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI----L 534
            LR+    V+   K    R  H + WG IC   TP+GE CGLVK L +   ++ ++    +
Sbjct: 484  LRKISSPVEGKRKTQKPRQLHNTQWGYICPAETPEGEQCGLVKMLSLMAQITVALPLQNV 543

Query: 535  EPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKE--- 591
            + I +QL +   + +++   +++    KVF++G W+    +    + +L++ R+  E   
Sbjct: 544  QEIKDQLNSQYCKDISECLGHNMNTTTKVFLNGSWLKCTDEPQKLLDDLKQYRKNSEKGK 603

Query: 592  LPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN--------------------MGKIKS 631
            +   + +  D+L  E+RI+ DAGR  RPL  V N                    MG+   
Sbjct: 604  VKKVMSMVLDQLHRELRIYTDAGRCTRPLFTVSNNNGELGINLQKEQIKQLCIEMGRNDE 663

Query: 632  LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLL 691
               K   +   L  GIIE V  +EEE    A     LL +      + +THCE++ + ++
Sbjct: 664  NGQKKKLWANFLTKGIIEYVDADEEEMSMIAMFPSDLL-NRGSGPAVNYTHCEINPALIM 722

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G+   IIPF +H+ + R  YQ      QAIG   +N  +R+D+L H LFYPQ+PL  T  
Sbjct: 723  GILGSIIPFPDHNQSPRNTYQC-AMGKQAIGVYASNYQLRMDSLGHVLFYPQKPLVSTKG 781

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRS---- 807
            +D   K G          E+  G NA+VAV V+ GYNQEDS++MN+ S++RG+FRS    
Sbjct: 782  AD-YAKFG----------EIPAGINAVVAVCVYSGYNQEDSVMMNQGSIDRGLFRSMCFK 830

Query: 808  EHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVI 867
              ++ YK   +   M  +     D+ +  K Q        LD DG    G  +++ D++I
Sbjct: 831  TFLKDYKKGEETDLMFFRPCEGTDLKDVSKYQH-------LDVDGVAPPGTKVRADDVII 883

Query: 868  GKY--ADSG--ADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSM 923
            G +    SG   D S++ K  E G+V +VV+++ ++      + +R +R P +GDKFSS 
Sbjct: 884  GAFYKGKSGELKDCSMRYKPRENGVVDQVVVATTENRAKMIKIKMRSIRIPQIGDKFSSR 943

Query: 924  HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGIC 983
            HGQKG +G    QE+ PF I+GI PDI++NPHA PSR T GQL+E  LGK + AL   + 
Sbjct: 944  HGQKGTVGMTYRQEDMPFNIEGINPDIIMNPHAIPSRMTVGQLVECLLGK-VGALVGDVQ 1002

Query: 984  SGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLI 1042
            +G     TPF    +VD I+++LH+  + +WG E L+ G TG  + +L+++GPT+YQRL 
Sbjct: 1003 NG-----TPFQPGLTVDVISDRLHKLKYQRWGYEALFSGHTGRKLDTLVYMGPTYYQRLK 1057

Query: 1043 HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSD 1102
            H+ +DKV  R TGP   LTRQP+  R R GG++ GEMERDC+I+HG +A L ERLF  SD
Sbjct: 1058 HLVDDKVHGRATGPYATLTRQPLEGRSRDGGLRLGEMERDCMISHGMSALLRERLFLASD 1117

Query: 1103 SYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSM 1162
             YQ+++C KC   A   QR            C  C     I K  +PY AKLL QEL SM
Sbjct: 1118 RYQVYVCDKCHMPAVANQRSSTFE-------CSCCKDRTHISKVEIPYAAKLLFQELMSM 1170

Query: 1163 GITLKFDTEF 1172
             I  +   E 
Sbjct: 1171 AICPRIYAEM 1180


>gi|67810790|gb|AAY82004.1| RNA polymerase IV second largest subunit [Arabidopsis thaliana]
          Length = 333

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 265/333 (79%), Positives = 294/333 (88%), Gaps = 6/333 (1%)

Query: 847  SLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVV 906
            SL+DDGFPFIGAN+ +GDIVIG+  +SGADHSIKLKHTERG+VQKVVLSSND+GKNF+ V
Sbjct: 1    SLEDDGFPFIGANMSTGDIVIGRCTESGADHSIKLKHTERGIVQKVVLSSNDEGKNFAAV 60

Query: 907  SLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQL 966
            SLRQVRSPCLGDKFSSMHGQKGVLG+LE Q+NFPFTIQGIVPDIVINPHAFPSRQTPGQL
Sbjct: 61   SLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQL 120

Query: 967  LEAALGKGIAAL------GKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYD 1020
            LEAAL KGIA             + L R+ATPF+TP V  ITEQLHRAGFS+WG ER+Y+
Sbjct: 121  LEAALSKGIACPIQKKEGSSAAYTKLTRHATPFSTPGVTEITEQLHRAGFSRWGNERVYN 180

Query: 1021 GRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEME 1080
            GR+GEM+RSLIF+GPTFYQRL+HMSE+KVKFRNTGPVHPLTRQPVADRKRFGGI+FGEME
Sbjct: 181  GRSGEMMRSLIFMGPTFYQRLVHMSENKVKFRNTGPVHPLTRQPVADRKRFGGIRFGEME 240

Query: 1081 RDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSG 1140
            RDCLIAHGA+ANLHERLFTLSDS QMHICRKCK  ANVI+R    GRK+RGPYCR+C S 
Sbjct: 241  RDCLIAHGASANLHERLFTLSDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVCASS 300

Query: 1141 DDIVKANVPYGAKLLCQELFSMGITLKFDTEFC 1173
            D +V+  VPYGAKLLCQELFSMGITL FDT+ C
Sbjct: 301  DHVVRVYVPYGAKLLCQELFSMGITLNFDTKLC 333


>gi|406694356|gb|EKC97684.1| DNA-directed RNA polymerase II subunit RPB2 [Trichosporon asahii var.
            asahii CBS 8904]
          Length = 1757

 Score =  567 bits (1460), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 382/1153 (33%), Positives = 584/1153 (50%), Gaps = 126/1153 (10%)

Query: 28   KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMR 87
            K   SFF+E GLV  Q+ S+NEF++N +Q+  D      ++     +     E R   + 
Sbjct: 38   KVINSFFDEKGLVRQQLESFNEFVENTMQELVDENQRLTLDQHTQHTGVMGDETRRYEIT 97

Query: 88   FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
            FGQ+ L K +    +G     +FP+ ARL+N+TY++ + V ++    +   V  D  +  
Sbjct: 98   FGQIYLAKVAMTEMDG-QTVGLFPQEARLRNLTYAAPLYVDMKKSTLSAGDV-DDPIEAD 155

Query: 148  REQYIQKE--VLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIK 199
             +  +     +   E   I IG++PVMV+S+ C + G+         +C +D GGYFII 
Sbjct: 156  WKPAVDANGVMQGAEEDKIWIGKVPVMVRSNFCLLHGLPDDHFYALNECPYDQGGYFIIN 215

Query: 200  GAEKVFVAQEQICLKRLWVSNSMGWT-VAYKSE---------NKRNRLIVRLVDMSKFED 249
            G+EKV +AQE++    ++V      + V Y SE            ++ +V++   ++ + 
Sbjct: 216  GSEKVLIAQERMAANTVYVFKKADPSPVTYLSEVTSQMEKGGKTPSKTVVKMYLRAQDKA 275

Query: 250  IKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFA------S 303
              G    + + +  T+IPI I+F ALG+  D+++++ I F   D ++L +L        S
Sbjct: 276  TTGSVIRVQLPYTKTDIPIVIVFRALGIVPDRDVLSHICFNPNDTAMLEMLRPCIEEAFS 335

Query: 304  IHDADNKCDEF-RKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTK----QKA 358
            I D D   D   R+G+          KGT      +  + +     P +  ++    +KA
Sbjct: 336  IQDRDTALDFIGRRGQQE--------KGTRAVRQRAAFDILQKEFLPHVSVSEGFESRKA 387

Query: 359  RFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRD 418
             FLGYM+  L  A  GRR+ D+RD F  KRL+LAG LL    ++      + + + LQ+ 
Sbjct: 388  FFLGYMIHRLCSAALGRRELDDRDHFGKKRLDLAGPLLANLFRILFKKLTRDVYRHLQKC 447

Query: 419  LYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVD 478
            +   +    +   +   I+TNGL  + +TG W    K  +  +G+   L R     TL  
Sbjct: 448  VETHKEFTLVNA-IKPGIITNGLKYSLATGNWGDQAKAMQARAGVSQVLNRYTFASTLSH 506

Query: 479  LRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPI 537
            LRRT   +   GK+   R  H +HWG IC   TP+G+ CGLVKNL +   +S  S   P+
Sbjct: 507  LRRTNTPIGRDGKIAKPRQLHNTHWGLICPAETPEGQACGLVKNLALMSYISVGSYSAPV 566

Query: 538  FEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVE 597
             E L   G+E    D   S     KVFV+G W+G+ +D++     L   RR  +L  +V 
Sbjct: 567  MEFLEEWGLE--PQDEYGSAPNATKVFVNGVWMGIHRDAVKLHENLLEMRRGGQLKHEVS 624

Query: 598  IKRDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNY-----------------TFQ 640
            I RD  + E+R++ DAGR+ RPL +V+   +   L+ ++                   + 
Sbjct: 625  IVRDIRERELRLYTDAGRVCRPLFIVDRPTQTLRLKREHIDRLENIADGLEEAVDGSAWD 684

Query: 641  ALLDHGIIELVGTEEEEDCCTAWGIKYL--------------------LKDIEDKKPIK- 679
             LL  G+IE V  EEEE    A   + L                    L+  +    +K 
Sbjct: 685  ELLYQGVIEYVDAEEEETILIAMTSEDLENARMYESPQEVARAQAAHTLEAFDPTARVKS 744

Query: 680  ------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVD 733
                  +TH E+  S +LG+   I+PF +H+ + R  YQS     QA+G   TN  +R+D
Sbjct: 745  SSWSQNYTHMEIHPSMILGVCASIVPFPDHNQSPRNTYQS-AMGKQAMGIHLTNYQLRMD 803

Query: 734  TLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSL 793
            T+++ L+YPQ PL  T                L   +L  GQNAIVA+  + GYNQEDS+
Sbjct: 804  TMANILYYPQSPLATTQ-----------SMKYLKFSDLPAGQNAIVAILCYSGYNQEDSV 852

Query: 794  VMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVD---SLDD 850
            +MN++S++RG+FRS + R+Y        MQ K  S +       ++ K G  D    LD+
Sbjct: 853  IMNQSSIDRGLFRSLYYRAYTDTEKMVGMQ-KVESFEKPDRNETLRMKHGSSDRYAKLDN 911

Query: 851  DGFPFIGANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLS 895
            DG      N+   DI+IGK A                +  D S  +K TE+G+V +V+++
Sbjct: 912  DGLITPATNVNGDDIIIGKTAPIPPDSEELGQRSATHTKRDVSTPMKSTEQGVVDQVMIT 971

Query: 896  SNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPH 955
            +N DG  F  + +R  R P +GDKF+S HGQKG +G    QE+ PFT +GI PDI+INPH
Sbjct: 972  TNADGLKFVKIRIRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPH 1031

Query: 956  AFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGT 1015
            A PSR T G L+E  L K +A L     +G +  ATPF   +V+++++ L + G+   G 
Sbjct: 1032 AIPSRMTIGHLVECLLSK-LATL-----TGREGDATPFTELTVESVSKLLRQRGYQSRGL 1085

Query: 1016 ERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIK 1075
            E +Y G TG+ +R+ ++ GPT+YQRL HM +DK+  R  GP+  LTRQPV  R R GG++
Sbjct: 1086 EVMYHGHTGKKLRAQVYFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLR 1145

Query: 1076 FGEMERDCLIAHG 1088
            FGEMERDCL  HG
Sbjct: 1146 FGEMERDCL--HG 1156



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 11/89 (12%)

Query: 1082 DCLIAHGAAANLHERLFTLSDSYQMHICRKC--KNVANVIQRVVGGGRKVRGPYCRICDS 1139
            +C+I+HG A  L ER++  SD++++H+C +C    VAN+         K +  +C +C +
Sbjct: 1671 NCMISHGIAGFLKERMYESSDAFRLHVCDQCGLMAVANL---------KKQEFHCSVCRN 1721

Query: 1140 GDDIVKANVPYGAKLLCQELFSMGITLKF 1168
               I +  +PY AKLL QEL +M +T++ 
Sbjct: 1722 STQISQIYIPYAAKLLFQELQAMNVTVRM 1750


>gi|167385143|ref|XP_001737225.1| DNA-directed RNA polymerase II subunit RPB2 [Entamoeba dispar SAW760]
 gi|165900064|gb|EDR26512.1| DNA-directed RNA polymerase II subunit RPB2, putative [Entamoeba
            dispar SAW760]
          Length = 1170

 Score =  566 bits (1458), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 394/1210 (32%), Positives = 599/1210 (49%), Gaps = 131/1210 (10%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            + F E GLV  Q++SYN FIK  ++    S    I     +       +    ++     
Sbjct: 21   AHFKENGLVKQQLSSYNNFIKK-VRDVITSDTTKIEISNAEVLGISANDEEEHTIVLTDP 79

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
                P    G+      +FP  ARL+++TY+ +++VK +  +           K G E+ 
Sbjct: 80   IFHFPKVSTGSKASA-SLFPHEARLRSLTYACQLEVKAKDTIR----------KNGTEEI 128

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG-------VEKGDCDFDHGGYFIIKGAEKV 204
                        I I  IP M+KSD+C +K        + K +C F+ GGYFIIKG+EKV
Sbjct: 129  TT-------VPKIDIASIPSMLKSDVCRLKRCVTQPSMISKDECSFEQGGYFIIKGSEKV 181

Query: 205  FVAQEQICLKRLWV---SNSMGW-------TVAYKSENKRNRLIVRLVDMSKFEDIKGGE 254
             +AQE++    + V   S+ + +       ++A   E + +++ +    + K   +K   
Sbjct: 182  VIAQEKMAPNTVLVFEGSDQLKYPYEGNINSLASNDEVRTHKIRMDYPKLDK-SRLKIKV 240

Query: 255  KVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIH--------D 306
             VL++  +  ++P+ +LF ALG  +D++IV  I F   D  + NI+  +I         D
Sbjct: 241  PVLTLSRMDCDVPVVLLFVALGYENDQKIVEAICFDENDNEMYNIVTTAIQANECTTTED 300

Query: 307  ADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGT---KQKARFLGY 363
            A     E  K  N    ++ + +       + TE+ +   L P + GT   + KA+FLGY
Sbjct: 301  ARRWLGEHSKKTNKEGVIEIVSENIQKLQRDGTEK-LKKDLLPHI-GTDNFESKAQFLGY 358

Query: 364  MVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDR 423
            M    L  Y+G+R  D+RD    KR+ + G L+    K  +    K     LQ+ L  ++
Sbjct: 359  MTNHFLSVYTGKRNGDDRDHLARKRMLMTGGLMMELFKNSLKRMMKTARAQLQKQLSSNK 418

Query: 424  TVRPIEYY--LDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRR 481
            T   +EY   L    +T+  ++A  TG W  P  +  R  G+   L R      L  LR+
Sbjct: 419  T---LEYAKPLSFPTITSDFTKALGTGNWPQPGGKESR-HGVAQVLSRLTFTSALAYLRK 474

Query: 482  TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI----LEPI 537
                V+   K    R  H + WG IC   TP+GE+CGLVK L +   ++ ++    ++ I
Sbjct: 475  ISSPVEGKRKTQKPRQLHNTQWGYICPAETPEGESCGLVKMLSLMAQITVALQDEQVDEI 534

Query: 538  FEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVE 597
             E L    +  + D     +    KVF++G W+   +     + EL+  R+     T+ +
Sbjct: 535  KEALDCQYVCNINDCTGEKMNNITKVFLNGVWLKCSEQPQKLLEELKNYRKNS---TKGK 591

Query: 598  IKR------DELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQAL--------- 642
            +K+      D+L  E+RI+ DAGR  RPL  V N     +L  K      L         
Sbjct: 592  VKKVMSMVLDQLHKELRIYTDAGRCTRPLFTVSNNNGHYTLNLKQSQITELCSRLDNESN 651

Query: 643  -----------LDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLL 691
                       L  GIIE V  +EEE    A      L + E      +THCE+  + ++
Sbjct: 652  GTEKTKFWNNFLSKGIIEYVDADEEEMSMIAM-FPSDLDNTEGGSSKNYTHCEIHPALVM 710

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G+   IIPF +H+ + R  YQ      QAIG   +N  +R+D+L H LFYPQ+PL  T  
Sbjct: 711  GVLGSIIPFPDHNQSPRNTYQC-AMGKQAIGVYASNYQLRLDSLGHVLFYPQKPLVSTRA 769

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
            ++ +    +GH        +  G NAIVAV  + GYNQEDS++MN+ S++RG+FRS   +
Sbjct: 770  AEYVK---FGH--------IPAGINAIVAVCCYSGYNQEDSVMMNQGSIDRGLFRSMAFK 818

Query: 812  SYKAEV---DNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIG 868
            ++  +    +  E+   + S     N  +I   I + + +D DG    G  ++  DI++ 
Sbjct: 819  TFSEDAKKSETTELMFFKPSE----NNSEITEDISKYEKVDVDGILAPGTKVKPDDILVA 874

Query: 869  KYADSG----ADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMH 924
             + ++      D S++ K  E G+V +VV+++   G  +  V +R +R P +GDKFSS H
Sbjct: 875  GFYENKNKTLKDCSLRYKPRENGVVDQVVVTNAQSGTKYIRVKMRSIRIPQIGDKFSSRH 934

Query: 925  GQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICS 984
            GQKG +G    QE+ PFTI+GI PDI++NPHA PSR T GQL+E  LGK + AL   + S
Sbjct: 935  GQKGTVGMTYRQEDMPFTIEGISPDIIMNPHAIPSRMTVGQLVECLLGK-VGALVGDVQS 993

Query: 985  GLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIH 1043
            G     TPF    +VD I E+LH+  + + G E L+ G TG  + SL++IGPT+YQRL H
Sbjct: 994  G-----TPFQKDITVDKIGERLHKLKYQRRGYEALFSGHTGRKLDSLVYIGPTYYQRLKH 1048

Query: 1044 MSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDS 1103
            + +DKV  R TGP   LTRQP+  R R GG++ GEMERDC+I+HG ++ L ERLF  SD 
Sbjct: 1049 LVDDKVHGRATGPYATLTRQPLEGRSRDGGLRLGEMERDCMISHGVSSLLKERLFLASDK 1108

Query: 1104 YQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFS 1161
            YQ+++C KC    VAN          K     C  C     I K ++PY  KLL QEL S
Sbjct: 1109 YQIYVCDKCHMPAVAN---------HKACTFQCSCCKDKTHISKVDIPYACKLLFQELMS 1159

Query: 1162 MGITLKFDTE 1171
            M +  +  TE
Sbjct: 1160 MAVCPRIYTE 1169


>gi|67475595|ref|XP_653488.1| DNA-directed RNA polymerase subunit [Entamoeba histolytica HM-1:IMSS]
 gi|56470445|gb|EAL48102.1| DNA-directed RNA polymerase subunit, putative [Entamoeba histolytica
            HM-1:IMSS]
 gi|449706687|gb|EMD46481.1| DNA-directed RNA polymerase II subunit RPB2, putative [Entamoeba
            histolytica KU27]
          Length = 1170

 Score =  566 bits (1458), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 397/1214 (32%), Positives = 600/1214 (49%), Gaps = 139/1214 (11%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            + F E GLV  Q++SYN FIK  ++    S    I     +       +    ++     
Sbjct: 21   AHFKENGLVKQQLSSYNNFIKK-VRDVITSDTTKIEISNAEVLGISANDEEEHTIVLTDP 79

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
                P    G+      +FP  ARL+++TYS +++VK +  +           K G E+ 
Sbjct: 80   IFHFPKVSTGSKASA-SLFPHEARLRSLTYSCQLEVKAKDTIR----------KNGAEEI 128

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG-------VEKGDCDFDHGGYFIIKGAEKV 204
                        I I  IP M+KSD+C +K        + K +C F+ GGYFIIKG+EKV
Sbjct: 129  TT-------VPKIDIASIPSMLKSDVCRLKRCVTQPSMINKDECSFEQGGYFIIKGSEKV 181

Query: 205  FVAQEQICLKRLWV---SNSMGW-------TVAYKSENKRNRLIVRLVDMSKFEDIKGGE 254
             +AQE++    + V   S+ + +       ++A   E + +++ +    + K   +K   
Sbjct: 182  VIAQEKMAPNTVLVFEGSDQLKYPYEGNINSLASNDEVRTHKIRMDYPKLDK-SRLKIKV 240

Query: 255  KVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIH--------D 306
             VLS+  +  ++P+ +LF ALG  +D++IV  I F   D  + NI+  +I         D
Sbjct: 241  PVLSLSRMDCDVPVVLLFVALGYENDQKIVEAICFDENDNEMYNIVTTAIQANECTTTED 300

Query: 307  ADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGT---KQKARFLGY 363
            A     E  K  N    ++ + +       + TE+ +   L P + GT   + KA+FLGY
Sbjct: 301  ARRWLGEHSKKTNKEGVIEIVSENIQKLQRDGTEK-LKKDLLPHI-GTDNFESKAQFLGY 358

Query: 364  MVKCLLQAYSGRRKCDNRDDFRNKRLELAG----ELLERELKVHIAHARKRMAKALQRDL 419
            M    L  Y+G+R  D+RD    KR+ + G    EL +  LK  +  AR ++ K L  + 
Sbjct: 359  MTNHFLSVYTGKRNGDDRDHLARKRMLMTGGLMMELFKNSLKRMMKTARAQLQKQLSSN- 417

Query: 420  YGDRTVRPIEYY--LDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLV 477
                  + +EY   L    +T   ++A  TG W  P  +  R  G+   L R      L 
Sbjct: 418  ------KALEYAKPLSFPTITTDFTKALGTGNWPQPGGKESR-HGVAQVLSRLTFTSALA 470

Query: 478  DLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI---- 533
             LR+    V+   K    R  H + WG IC   TP+GE+CGLVK L +   ++ ++    
Sbjct: 471  YLRKISSPVEGKRKTQKPRQLHNTQWGYICPAETPEGESCGLVKMLSLMAQITVALQDEQ 530

Query: 534  LEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELP 593
            ++ I E L    +  + D     +    KVF++G W+   +     + EL+  R+     
Sbjct: 531  VDEIKEALDCQYVCNINDCTGEKMNNITKVFLNGVWLKCSEQPQKLLEELKNYRKNS--- 587

Query: 594  TQVEIKR------DELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQAL----- 642
            T+ ++K+      D+L  E+RI+ DAGR  RPL  V N     +L  K      L     
Sbjct: 588  TKGKVKKVMSMVLDQLHKELRIYTDAGRCTRPLFTVSNNNGHYTLNLKQSQITELCSRLD 647

Query: 643  ---------------LDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDM 687
                           L  GIIE V  +EEE    A      L + E      +THCE+  
Sbjct: 648  NESNGTEKTKFWNNFLSKGIIEYVDADEEEMSMIAM-FPSDLDNTEGGSSKNYTHCEIHP 706

Query: 688  SFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLF 747
            + ++G+   IIPF +H+ + R  YQ      QAIG   +N  +R+D+L H LFYPQ+PL 
Sbjct: 707  ALVMGVLGSIIPFPDHNQSPRNTYQC-AMGKQAIGVYASNYQLRLDSLGHVLFYPQKPLV 765

Query: 748  RTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRS 807
             T  ++ +    +GH        +  G NAIVAV  + GYNQEDS++MN+ S++RG+FRS
Sbjct: 766  STRAAEYVK---FGH--------IPAGINAIVAVCCYSGYNQEDSVMMNQGSIDRGLFRS 814

Query: 808  EHIRSYKAEV---DNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGD 864
               +++  +    +  E+   + S     N  +I   I + + +D DG    G  ++  D
Sbjct: 815  MAFKTFSEDAKKSETTELMFFKPSE----NNSEITEDISKYEKVDVDGILAPGTKVKPDD 870

Query: 865  IVIGKYADSG----ADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKF 920
            I++  + ++      D S++ K  E G+V +VV+++   G  +  V +R +R P +GDKF
Sbjct: 871  ILVAGFYENKNKTLKDCSLRYKPRENGVVDQVVVTNAQSGTKYIRVKMRSIRIPQIGDKF 930

Query: 921  SSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGK 980
            SS HGQKG +G    QE+ PFTI+GI PDI++NPHA PSR T GQL+E  LGK + AL  
Sbjct: 931  SSRHGQKGTVGMTYRQEDMPFTIEGISPDIIMNPHAIPSRMTVGQLVECLLGK-VGALVG 989

Query: 981  GICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQ 1039
             + SG     TPF    +VD I E+LH+  + + G E L+ G TG  + SL++IGPT+YQ
Sbjct: 990  DVQSG-----TPFQKDVTVDRIGERLHKLKYQRRGYEALFSGHTGRKLDSLVYIGPTYYQ 1044

Query: 1040 RLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFT 1099
            RL H+ +DKV  R TGP   LTRQP+  R R GG++ GEMERDC+I+HG ++ L ERLF 
Sbjct: 1045 RLKHLVDDKVHGRATGPYATLTRQPLEGRSRDGGLRLGEMERDCMISHGVSSLLKERLFL 1104

Query: 1100 LSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQ 1157
             SD YQ+++C KC    VAN          K     C  C     I K ++PY  KLL Q
Sbjct: 1105 ASDKYQIYVCDKCHMPAVAN---------HKACTFQCSCCKDKTHISKVDIPYACKLLFQ 1155

Query: 1158 ELFSMGITLKFDTE 1171
            EL SM +  +  TE
Sbjct: 1156 ELMSMAVCPRIYTE 1169


>gi|116201245|ref|XP_001226434.1| hypothetical protein CHGG_08507 [Chaetomium globosum CBS 148.51]
 gi|88177025|gb|EAQ84493.1| hypothetical protein CHGG_08507 [Chaetomium globosum CBS 148.51]
          Length = 1182

 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 372/1042 (35%), Positives = 545/1042 (52%), Gaps = 122/1042 (11%)

Query: 164  IIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLW 217
            I +G++PVMVKS +C + G +        +C +D GGYFII G+EKV +AQE+     + 
Sbjct: 144  IFLGKLPVMVKSQVCHLAGEDDESLFLLNECPYDQGGYFIINGSEKVLIAQERSAANIVQ 203

Query: 218  V-SNSMGWTVAYKSE-----NKRNRLI--VRLVDMSKFEDIKG---GEKVLSVYFLSTEI 266
            V     G +V+Y++E      K +RLI  +++   SK    KG       +++ ++  ++
Sbjct: 204  VFKKPPGGSVSYQAEIRSALEKGSRLISSLQMKLHSKGSPEKGRLANTVSVTLPYVREDV 263

Query: 267  PIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDK 326
             + I+F ALG+ SD++I+N I +   D  +L  L   I +A   C + R+   AL ++ K
Sbjct: 264  SLGIVFRALGIVSDEDILNHICYDRTDTQMLEALRPCIEEA--FCIQDRE--IALDFIGK 319

Query: 327  LIKGTT----FPPGESTEECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKC 378
               G           + ++ +   + P +  T+    +KA FLGYMV  LLQ   GRR  
Sbjct: 320  RGNGNAGQNRMNRVRAAKDLLQKEMLPHISQTEGCETRKAFFLGYMVHRLLQCALGRRDP 379

Query: 379  DNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILT 438
            D+RD F  KRL+L G LL +  +  I    + +   ++R +  ++    +   +  S LT
Sbjct: 380  DDRDHFGKKRLDLPGPLLAKLFRNVIRRMTQDLMSYMKRCIDTNKNFS-LPLGIKHSTLT 438

Query: 439  NGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYP 498
            NGL  + +TG W    K     +G+   L R     TL  LRRT   +   GK+   R  
Sbjct: 439  NGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQL 498

Query: 499  HPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSL 557
            H +HWG +C   TP+G+ CGLVKNL +   VS  +  +PI E +   GME L +      
Sbjct: 499  HNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPADPIVEFMIARGMEVLEEYEPLRY 558

Query: 558  GGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRIL 617
                KVFV+G W+GV +D    V+ ++  RR+  +  +V + RD    E +IF DAGR++
Sbjct: 559  PNATKVFVNGTWVGVHQDPKHLVTLVQGLRRKNVISFEVSLVRDIRDREFKIFSDAGRVM 618

Query: 618  RPLLVVE-------------------NMGKIK------SLEGKNYTFQALLDHGIIELVG 652
            RPL  VE                   ++G++K            + +Q LL  G IE + 
Sbjct: 619  RPLFTVEQEPNGESGAEMGALILNKDHIGRLKMDAELGKYHPDYWGWQGLLKSGAIEYLD 678

Query: 653  TEEEED---CCTAWGIKYL-------------------LKDIEDKKPIKFTHCELDMSFL 690
             EEEE    C T   +                      +K   +     +THCE+  S L
Sbjct: 679  AEEEETVMICMTPQDLDQFRARKMGRIEPDNSGLGNNRIKTKPNPTTHMYTHCEIHPSML 738

Query: 691  LGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTM 750
            LG+   IIPF +H+ + R  YQS     QA+GF  TN S R+DT+++ L+YPQ+PL  T 
Sbjct: 739  LGICASIIPFPDHNQSPRNTYQS-AMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTR 797

Query: 751  ISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHI 810
              +            L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   
Sbjct: 798  SME-----------FLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGIFRSLFF 846

Query: 811  RSY-----KAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDI 865
            RSY     +  ++  E   K   SD       ++ K    D LD DG    G  +   DI
Sbjct: 847  RSYTDCEKRVGINIVEQFEKPNRSD------TLRLKHSTYDKLDADGIVAPGIRVSGEDI 900

Query: 866  VIGKY-------ADSGA--------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQ 910
            +IGK        A+ G         D S  L+ TE G++ +VV+++N DG  +  V +R 
Sbjct: 901  IIGKTCPINPDNAELGQRSNQHVKRDASTPLRSTESGIIDQVVMTTNQDGMRYVKVRVRT 960

Query: 911  VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA 970
             + P +GDKF+S HGQKG +G    QE+ PFT +GI PDI+INPHA PSR T   L+E  
Sbjct: 961  TKVPQIGDKFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECL 1020

Query: 971  LGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSL 1030
            L K ++ L      G++  ATPF   +VD++++ L   G+   G E +Y G TG  +RS 
Sbjct: 1021 LSK-VSTL-----KGMEGDATPFTDVTVDSVSDLLREHGYQSRGFEIMYHGHTGRKLRSQ 1074

Query: 1031 IFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAA 1090
            IF GPT+YQRL HM +DK+  R  GP+  +TRQPV  R R GG++FGEMERDC+IAHGAA
Sbjct: 1075 IFFGPTYYQRLRHMVDDKIHARARGPLQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAA 1134

Query: 1091 ANLHERLFTLSDSYQMHICRKC 1112
            + L ERLF +SD++++HIC  C
Sbjct: 1135 SFLKERLFEVSDAFRVHICEIC 1156


>gi|443919777|gb|ELU39849.1| DNA-directed RNA polymerase II [Rhizoctonia solani AG-1 IA]
          Length = 1179

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 373/1147 (32%), Positives = 581/1147 (50%), Gaps = 139/1147 (12%)

Query: 19   EEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGE 78
            +E  +  C     SFF+E GLV  Q++S++EF++N +Q+  D   + I++     +    
Sbjct: 69   DEITQEDCWTIITSFFDEKGLVRQQLDSFDEFVQNTMQELVDESADLILDQSDQHTGAEN 128

Query: 79   GEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKR 138
               +   +RFGQ+ L +P+    +G     +FP+ A                  V   KR
Sbjct: 129  DATKRYEIRFGQIYLSRPTITEADGS-VVPVFPQEA--------------PPLYVDMTKR 173

Query: 139  VTSD-KFKTGREQY-IQKEVLSDETTNIIIGR----IPVMVKSDLCWMKGVEKGDCDFDH 192
            V    + + G  Q+  +   L +    + IG+    IP+ ++S   +    +  +C  D 
Sbjct: 174  VLHGFEDENGETQFRPEGNGLEERADKVWIGKVGRNIPLCLESKDLY----DLNECPLDQ 229

Query: 193  GGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKRNRLIVRLVDMSKF 247
            GGYFII G+EKV +AQE++    ++V      + + +    +S  ++    +  + +  F
Sbjct: 230  GGYFIINGSEKVLIAQERMAGNHVYVFAKAQPSPISFLSEIRSAVEKGGKTISTMQVKMF 289

Query: 248  EDIKGGEKVL------SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILF 301
               +  +K L      S+ ++  +IPIW++F ALGV+SD++I+  I +  +D S+L +L 
Sbjct: 290  H--RNQDKTLGNVIRASLPYIKNDIPIWVVFRALGVTSDRDILEHICYDRDDTSMLEMLK 347

Query: 302  ASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSLHGTK- 355
              I +     +    G+NAL ++    +GTT    +       +E +   + P +   + 
Sbjct: 348  PCIDEGFVIQERIVSGQNALDFIGS--RGTTTGLNKEKRLRYAQEILQKEMLPHISMAEG 405

Query: 356  ---QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMA 412
               +KA F GYM+  LL A   RR+ D+RD F  KRL+LAG LL        A   + + 
Sbjct: 406  SETKKAFFFGYMIHRLLLAALDRRELDDRDHFGKKRLDLAGPLL--------ASLFRMLF 457

Query: 413  KALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANP 472
            + L +D         +   + A+ +TNGL  + +TG W    K     +G+   L R   
Sbjct: 458  RKLTKDCVESNREFQLRLAVKANTITNGLKYSLATGNWGDQKKSMSAKAGVSQVLNRYTF 517

Query: 473  LQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTS 532
              TL  LRR    +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  
Sbjct: 518  ASTLSHLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVG 577

Query: 533  ILE-PIFEQLFNSGMEKLADD-ASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRK 590
             L  P+ E L   G+E L ++ A+ +     KVFV+G W+G+ +D+ + V  L R RR  
Sbjct: 578  SLSGPVIEFLEEWGLESLEENVATGNSASATKVFVNGVWLGIHRDAPNLVKTLHRLRRMD 637

Query: 591  ELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIK-------------SLEGKNY 637
             + ++V I RD  + E+RI+ DAGRI RPL +V+   K+                EG+ +
Sbjct: 638  HINSEVSIVRDIREKELRIYTDAGRICRPLFIVDEQQKLTLKKKHVEWLQNGVDEEGQEF 697

Query: 638  TFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIK------------------ 679
             ++ L+  G+IEL+  +EEE       I    +D+E+ + I+                  
Sbjct: 698  KWKQLVKRGVIELLDADEEETVM----ISMTPEDLENSRRIEGGGYVSNVNDPDWDPSGT 753

Query: 680  -----------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNP 728
                       +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN 
Sbjct: 754  ARVKSVPNIHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS-AMGKQAMGIYLTNY 812

Query: 729  SIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYN 788
             IR+DT+++ L+YPQ+PL  T   +            L   EL  GQNAIVA+  + GYN
Sbjct: 813  QIRMDTMANILYYPQKPLATTRSME-----------YLKFRELPAGQNAIVAILCYSGYN 861

Query: 789  QEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSL 848
            QEDS++MN++S++RG+FRS + RSY  +++ K   +     +       ++ K G  D L
Sbjct: 862  QEDSVIMNQSSIDRGLFRSMYYRSY-MDIEKKAGVLNLEEFEKPTRDTTLRMKHGTYDKL 920

Query: 849  DDDGFPFIGANLQSGDIVIGKYADSGADH---------------SIKLKHTERGMVQKVV 893
            + DGF   G  +   DI+IGK A   AD                S  LK TE G+V +V+
Sbjct: 921  EADGFIAPGTGVTGEDIIIGKTAPLQADSEELGQRTRSHTKRDVSTPLKSTENGIVDQVL 980

Query: 894  LSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVIN 953
            +++N +G  F  V +R  R P  GDKF+S HGQKG +G    QE+ PFT +GI PD++IN
Sbjct: 981  ITTNHEGHKFVKVRVRSTRVPQTGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDLIIN 1040

Query: 954  PHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKW 1013
            PHA PSR T G L+E  L K    LG       +  ATPF   +VD++++ L + G+   
Sbjct: 1041 PHAIPSRMTIGHLVECLLSKVATLLGN------EGDATPFTELTVDSVSQLLQQKGYQSR 1094

Query: 1014 GTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGG 1073
            G E +Y G TG+ +++ ++ GPT+YQRL HM +DK+  R  GPV  LTRQPV  R R GG
Sbjct: 1095 GLEVMYHGHTGKKLQAQVYFGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGG 1154

Query: 1074 IKFGEME 1080
            ++FGEME
Sbjct: 1155 LRFGEME 1161


>gi|407045039|gb|EKE42974.1| DNA-directed RNA polymerase, beta subunit domain containing protein
            [Entamoeba nuttalli P19]
          Length = 1170

 Score =  564 bits (1453), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 396/1214 (32%), Positives = 600/1214 (49%), Gaps = 139/1214 (11%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            + F E GLV  Q++SYN FIK  ++    S    I     +       +    ++     
Sbjct: 21   AHFKENGLVKQQLSSYNNFIKK-VRDVITSDTTKIEISNAEVLGISANDEEEHTIVLTDP 79

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
                P    G+      +FP  ARL+++TY+ +++VK +  +           K G E+ 
Sbjct: 80   IFHFPKVSTGSKASA-SLFPHEARLRSLTYACQLEVKAKDIIR----------KNGAEEI 128

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG-------VEKGDCDFDHGGYFIIKGAEKV 204
                        I I  IP M+KSD+C +K        + K +C F+ GGYFIIKG+EKV
Sbjct: 129  TT-------VPKIDIASIPSMLKSDVCRLKRCVTQPSMISKDECSFEQGGYFIIKGSEKV 181

Query: 205  FVAQEQICLKRLWV---SNSMGW-------TVAYKSENKRNRLIVRLVDMSKFEDIKGGE 254
             +AQE++    + V   S+ + +       ++A   E + +++ +    + K   +K   
Sbjct: 182  VIAQEKMAPNTVLVFEGSDQLKYPYEGNINSLASNDEVRTHKIRMDYPKLDK-SRLKIKV 240

Query: 255  KVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIH--------D 306
             VLS+  +  ++P+ +LF ALG  +D++IV  I F   D  + NI+  +I         D
Sbjct: 241  PVLSLSRMDCDVPVVLLFVALGYENDQKIVEAICFDENDNEMYNIVTTAIQANECTTTED 300

Query: 307  ADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGT---KQKARFLGY 363
            A     E  K  N    ++ + +       + TE+ +   L P + GT   + KA+FLGY
Sbjct: 301  ARRWLGEHSKKTNKEGVIEIVSENIQKLQRDGTEK-LKKDLLPHI-GTDNFESKAQFLGY 358

Query: 364  MVKCLLQAYSGRRKCDNRDDFRNKRLELAG----ELLERELKVHIAHARKRMAKALQRDL 419
            M    L  Y+G+R  D+RD    KR+ + G    EL +  LK  +  AR ++ K L  + 
Sbjct: 359  MTNHFLSVYTGKRNGDDRDHLARKRMLMTGGLMMELFKNSLKRMMKTARAQLQKQLSSN- 417

Query: 420  YGDRTVRPIEYY--LDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLV 477
                  + +EY   L    +T   ++A  TG W  P  +  R  G+   L R      L 
Sbjct: 418  ------KALEYAKPLSFPTITTDFTKALGTGNWPQPGGKESR-HGVAQVLSRLTFTSALA 470

Query: 478  DLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI---- 533
             LR+    V+   K    R  H + WG IC   TP+GE+CGLVK L +   ++ ++    
Sbjct: 471  YLRKISSPVEGKRKTQKPRQLHNTQWGYICPAETPEGESCGLVKMLSLMAQITVALQDEQ 530

Query: 534  LEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELP 593
            ++ I E L    +  + D     +    KVF++G W+   +     + EL+  R+     
Sbjct: 531  VDEIKEALDCQYVCNINDCTGEKMNNITKVFLNGVWLKCSEQPQKLLEELKNYRKNS--- 587

Query: 594  TQVEIKR------DELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQAL----- 642
            T+ ++K+      D+L  E+RI+ DAGR  RPL  V N     +L  K      L     
Sbjct: 588  TKGKVKKVMSMVLDQLHKELRIYTDAGRCTRPLFTVSNNNGHYTLNLKQSQITELCSRLD 647

Query: 643  ---------------LDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDM 687
                           L  GIIE V  +EEE    A      L + E      +THCE+  
Sbjct: 648  NESNGTEKTKFWNNFLSKGIIEYVDADEEEMSMIAM-FPSDLDNTEGGSSKNYTHCEIHP 706

Query: 688  SFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLF 747
            + ++G+   IIPF +H+ + R  YQ      QAIG   +N  +R+D+L H LFYPQ+PL 
Sbjct: 707  ALVMGVLGSIIPFPDHNQSPRNTYQC-AMGKQAIGVYASNYQLRLDSLGHVLFYPQKPLV 765

Query: 748  RTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRS 807
             T  ++ +    +GH        +  G NAIVAV  + GYNQEDS++MN+ S++RG+FRS
Sbjct: 766  STRAAEYVK---FGH--------IPAGINAIVAVCCYSGYNQEDSVMMNQGSIDRGLFRS 814

Query: 808  EHIRSYKAEV---DNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGD 864
               +++  +    +  E+   + S     N  +I   I + + +D DG    G  ++  D
Sbjct: 815  MAFKTFSEDAKKSETTELMFFKPSE----NNSEITEDISKYEKVDVDGILAPGTKVKPDD 870

Query: 865  IVIGKYADSG----ADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKF 920
            I++  + ++      D S++ K  E G+V +VV+++   G  +  V +R +R P +GDKF
Sbjct: 871  ILVAGFYENKNKTLKDCSLRYKPRENGVVDQVVVTNAQSGTKYIRVKMRSIRIPQIGDKF 930

Query: 921  SSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGK 980
            SS HGQKG +G    QE+ PFTI+GI PDI++NPHA PSR T GQL+E  LGK + AL  
Sbjct: 931  SSRHGQKGTVGMTYRQEDMPFTIEGISPDIIMNPHAIPSRMTVGQLVECLLGK-VGALVG 989

Query: 981  GICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQ 1039
             + SG     TPF    +VD I E+LH+  + + G E L+ G TG  + SL++IGPT+YQ
Sbjct: 990  DVQSG-----TPFQKDVTVDRIGERLHKLKYQRRGYEALFSGHTGRKLDSLVYIGPTYYQ 1044

Query: 1040 RLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFT 1099
            RL H+ +DKV  R TGP   LTRQP+  R R GG++ GEMERDC+I+HG ++ L ERLF 
Sbjct: 1045 RLKHLVDDKVHGRATGPYATLTRQPLEGRSRDGGLRLGEMERDCMISHGVSSLLKERLFL 1104

Query: 1100 LSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQ 1157
             SD YQ+++C KC    VAN          K     C  C     I K ++PY  KLL Q
Sbjct: 1105 ASDKYQIYVCDKCHMPAVAN---------HKACTFQCSCCKDKTHISKVDIPYACKLLFQ 1155

Query: 1158 ELFSMGITLKFDTE 1171
            EL SM +  +  TE
Sbjct: 1156 ELMSMAVCPRIYTE 1169


>gi|432961296|ref|XP_004086596.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB2-like [Oryzias latipes]
          Length = 1120

 Score =  564 bits (1453), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 403/1228 (32%), Positives = 595/1228 (48%), Gaps = 178/1228 (14%)

Query: 2    DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDS 61
            D DD+  T      DL +E     C     S+F+E GLV  Q++S++EFI+  +Q+  + 
Sbjct: 11   DEDDDEITP-----DLWQEA----CWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 62   FGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTY 121
                 ++     +     E     ++F Q+ L KP+ +  +G     M P  ARL+N+TY
Sbjct: 62   APPIDLQAEAQHTSGEVEEPPRFLLKFEQIYLSKPTHWERDGAPS-PMMPNEARLRNLTY 120

Query: 122  SSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMK 181
            S+ + V +          T    K G +Q      L  +     IG+IP+M++S  C + 
Sbjct: 121  SAPLYVDI----------TKTIIKEGEDQ------LQTQHQKTFIGKIPIMLRSTYCLLS 164

Query: 182  GV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE---- 231
            G+      E  +C  D GGYFII G+EKV +AQE++    ++V        AY +E    
Sbjct: 165  GLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTAECRSC 224

Query: 232  ---NKRNRLIVRLVDMSK----FEDIKGGEKVLSVY-FLSTEIPIWILFFALGVSSDKEI 283
               + R    + +  M++     +    G++++S   ++  E+PI I+F ALG  SD++I
Sbjct: 225  LEXSSRPTSTIWVSMMARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDI 284

Query: 284  VNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIK 329
            +  I +  +D  ++ ++  S+ +A      N    F   R A         +KY  ++++
Sbjct: 285  LEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQ 344

Query: 330  GTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRL 389
                P    ++ C             +KA FLGYMV  LL A  GRR+ D+RD + NKRL
Sbjct: 345  KEMLPHVGVSDFC-----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRL 393

Query: 390  ELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGA 449
            +LAG LL    +    +  K +    Q+ +   +    +E  +   I+++GL  + +TG 
Sbjct: 394  DLAGPLLAFLFRGMFKNLLKEIRIYAQKFIDRGKDFN-LELAIKTRIISDGLKYSLATGN 452

Query: 450  WSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFL 509
            W    K  +  +G+   L R     TL  LRR    +   GK+   R  H + WG +C  
Sbjct: 453  WGDVKKAHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPA 512

Query: 510  STPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGD 568
             TP+G   GLVKNL +   +S  S   PI E L    ME L + +  ++    K+FV+G 
Sbjct: 513  ETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGC 572

Query: 569  WIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK 628
            W+G+ KD    ++ LR+ RR+                     MD       ++V E+   
Sbjct: 573  WVGIHKDPEQLMNTLRKLRRQ---------------------MD-------IIVSED--- 601

Query: 629  IKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPI---KFTHCEL 685
                         L+  G++E + T EEE    A        D+++K       +THCE+
Sbjct: 602  -------------LVASGVVEYIDTLEEETVMLAM----TPDDLQEKGVAYCSTYTHCEI 644

Query: 686  DMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRP 745
              S +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YPQ+P
Sbjct: 645  HPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKP 703

Query: 746  LFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMF 805
            L  T   +            L   EL  G N+IVA+  + GYNQEDS++MNR++++RG F
Sbjct: 704  LVTTRSME-----------YLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFF 752

Query: 806  RSEHIRSYKAE-----VDNKEMQVK--RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGA 858
            RS   RSYK +      D +E+  K  R +   M        +    D LDDDG    G 
Sbjct: 753  RSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGM--------RHAIYDKLDDDGLIAPGV 804

Query: 859  NLQSGDIVIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNF 903
             +   D++IGK                  +  D S  L+ +E G+V +V+++ N +G  F
Sbjct: 805  RVSGEDVIIGKTVTLPENDDELDSTNKRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKF 864

Query: 904  SVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTP 963
              + +R VR P +GDKF+S HGQKG  G    QE+ PFT +GI PDI+INPHA PSR T 
Sbjct: 865  CKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTV 924

Query: 964  GQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGR 1022
            G L+E   GK   +  KG        ATPF    +V  ++  L   G+   G E LY+G 
Sbjct: 925  GHLIECLQGK--VSANKGEIGD----ATPFNDAVNVQKVSNLLSEYGYHLRGNEVLYNGF 978

Query: 1023 TGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1082
            TG  + S IFIGPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERD
Sbjct: 979  TGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERD 1038

Query: 1083 CLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDD 1142
            C IAHGAA  L ERLF  SD YQ+H+C  C  +A           +     CR C +   
Sbjct: 1039 CQIAHGAAQFLKERLFEASDPYQVHVCNLCGLMAI-------ANTRTHTYECRGCRNKTQ 1091

Query: 1143 IVKANVPYGAKLLCQELFSMGITLKFDT 1170
            I    +PY  KLL QEL SM I  +  T
Sbjct: 1092 ISLIRMPYACKLLFQELMSMSIAPRMMT 1119


>gi|164428317|ref|XP_957106.2| DNA-directed RNA polymerase II 140 kDa polypeptide [Neurospora crassa
            OR74A]
 gi|157072100|gb|EAA27870.2| DNA-directed RNA polymerase II 140 kDa polypeptide [Neurospora crassa
            OR74A]
          Length = 1005

 Score =  563 bits (1451), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 377/1018 (37%), Positives = 536/1018 (52%), Gaps = 124/1018 (12%)

Query: 187  DCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE-----NKRNRLI-- 238
            +C +D GGYFII G+EKV +AQE+     + V     G +V+Y++E      K +RLI  
Sbjct: 6    ECPYDQGGYFIINGSEKVLIAQERSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLISS 65

Query: 239  VRLVDMSKFEDIKG---GEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCS 295
            +++   +K +  KG       +++ ++  E+ + I+F ALGV SD++I+N I +   D  
Sbjct: 66   LQMRLHTKADQNKGRLANTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRRDSQ 125

Query: 296  ILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPG----ESTEECMNTYLFPSL 351
            +L  L   I +A   C + R+   AL Y+ K   G+T        ++ +E +   L P +
Sbjct: 126  MLEALRPCIEEA--FCIQDRE--VALDYIGKRGNGSTGINRNGRIKAAKEMLQKELLPHI 181

Query: 352  HGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHA 407
               +    +KA FLGYMV  LLQ   GRR  D+RD F  KRL+LAG LL        A  
Sbjct: 182  SQAEGCETRKAFFLGYMVHKLLQCVLGRRDTDDRDHFGKKRLDLAGPLL--------AKL 233

Query: 408  RKRMAKALQRDLYG--DRTVRPIEYY-----LDASILTNGLSRAFSTGAWSHPFKRTERI 460
             + + + L +DL G   R V   +++     + AS LTNGL  + +TG W    K     
Sbjct: 234  FRGIVRRLTQDLMGYMKRCVDTNKHFSLALGIKASTLTNGLKYSLATGNWGDQKKAMSST 293

Query: 461  SGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLV 520
            +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLV
Sbjct: 294  AGVSQVLNRYTFSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLV 353

Query: 521  KNLGVTGLVSTSIL-EPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSF 579
            KNL +   VS   L +PI E +    ME L +          KVFV+G W+GV +D    
Sbjct: 354  KNLSLMCFVSVGTLADPIIEFMIARNMEVLEEYEPLRYPNATKVFVNGTWVGVHQDPKHL 413

Query: 580  VSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK----------- 628
            V+ ++  RR+  +  +V + RD    E +IF DAGR++RPL VVE               
Sbjct: 414  VTLVQNLRRKNIISFEVSLVRDIRDREFKIFSDAGRVMRPLFVVEQEDNSESGVEKGQLI 473

Query: 629  -----IKSLE-----GKN----YTFQALLDHGIIELVGTEEEED---CCTAWGI------ 665
                 I+ LE     GK     + +Q LL+ G IE +  EEEE    C T   +      
Sbjct: 474  LTKEHIRRLEQDKELGKYHEDYFGWQGLLESGAIEYLDAEEEETAMICMTPEDLDTYRQH 533

Query: 666  KYLLKDIEDKKPIK---------------FTHCELDMSFLLGLSCGIIPFANHDHARRVL 710
            K+  ++ ED    +               +THCE+  S LLG+   IIPF +H+ + R  
Sbjct: 534  KFKGREFEDDAANRGNSRIKTKFNPTTHMYTHCEIHPSMLLGICASIIPFPDHNQSPRNT 593

Query: 711  YQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPE 770
            YQS     QA+GF  TN S R+DT+++ L+YPQ+PL  T   +            L   E
Sbjct: 594  YQSAM-GKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRSME-----------YLKFRE 641

Query: 771  LYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYK-AEVDNKEMQVKRRSS 829
            L  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   RSY   E       V++   
Sbjct: 642  LPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGIFRSLFFRSYTDCEKRVGINIVEQFEK 701

Query: 830  DDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH------------ 877
             D  N   ++ K G  D L++DG    G  +   DI+IGK +    D+            
Sbjct: 702  PDRSN--TLRPKHGTYDKLENDGIIAPGIRVTGDDIIIGKTSPINPDNQELGQRTAQHVK 759

Query: 878  ---SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLE 934
               S  L+ TE G+V  V  ++N DG  +  V +R  + P +GDKF+S HGQKG +G   
Sbjct: 760  RDASTPLRSTESGIVDSVAFTTNQDGLRYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTY 819

Query: 935  SQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFA 994
             QE+ PFT +GI PDI+INPHA PSR T   L+E  L K       G   G++  ATPF 
Sbjct: 820  RQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLLSK------VGALKGMEGDATPFT 873

Query: 995  TPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNT 1054
              +VD+++  L   G+   G E +Y G TG+ +R+ +F GPT+YQRL HM +DK+  R  
Sbjct: 874  DVTVDSVSNLLREHGYQSRGFEIMYHGHTGKKLRAQVFFGPTYYQRLRHMVDDKIHARAR 933

Query: 1055 GPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKC 1112
            GPV  +TRQPV  R R GG++FGEMERDC+IAHGAAA L ERLF +SD++++HIC  C
Sbjct: 934  GPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERLFEVSDAFRVHICEIC 991


>gi|123481595|ref|XP_001323594.1| DNA-directed RNA polymerase, beta subunit family protein [Trichomonas
            vaginalis G3]
 gi|121906462|gb|EAY11371.1| DNA-directed RNA polymerase, beta subunit family protein [Trichomonas
            vaginalis G3]
          Length = 1177

 Score =  562 bits (1449), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 385/1201 (32%), Positives = 588/1201 (48%), Gaps = 119/1201 (9%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPG----------YDPSKKGEGEWR 82
            FF   GLV  Q+ SYN FI N +    D  G   ++            ++ +   E + +
Sbjct: 28   FFENRGLVKQQLKSYNSFINNCVDSVLDDKGHITLQSDQLLANKIKMDFNSNDDDEDQGK 87

Query: 83   YASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSD 142
               + FG  T+ +P+   G       + P  +RL++++YS  ++  ++        V  D
Sbjct: 88   TIHISFGTSTVLRPTTPEGK-----QLTPMISRLRSLSYSLILRSDIRV-------VVMD 135

Query: 143  KFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK--------GDCDFDHGG 194
              K  ++          +   + I ++PVM++S+ C +              +CD+D GG
Sbjct: 136  SNKNMKQL---------DVDGVEIAKVPVMIRSEYCHLSNHRDDRAINDNLNECDYDPGG 186

Query: 195  YFIIKGAEKVFVAQEQICLKR--LWVSNSMGWTVAYKSENKRNRLIVRLVDMSKF----E 248
            YFI+ G+EKV + QE + + +   +   SM           + ++  RL           
Sbjct: 187  YFIVNGSEKVIIGQEHMVINKPICYAQKSMVKYDLATEIRSQPKVFGRLSQPFNLFLLAP 246

Query: 249  DIKGGEKVLSVYFLSTE--IPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHD 306
              K  E+ +      TE  IP++ILF AL    DKEI++LI +  ED   +++L  SI +
Sbjct: 247  TAKQPERPIHAKLSKTEKTIPLFILFRALKFKGDKEILDLICYDPEDSEFIDVLRPSIEE 306

Query: 307  ADNKCDEFRKGRNALKYVDKLIKGTTFPPGE---STEECMNTYLFPSL----HGTKQKAR 359
            + +  D+    R  L +V K          +     +  +N YL P L      T  KA 
Sbjct: 307  SSSFLDD----RACLDFVGKRCSIAAEEKSQRLRKAQRLLNEYLLPHLGEKESDTTSKAF 362

Query: 360  FLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL--------ERELKVHIAHARKRM 411
            F+GYM   L+    GRR  D+RD + NKRL+LAG L+        E+ +K    H  KR+
Sbjct: 363  FIGYMAHNLINVVLGRRDQDDRDHYSNKRLDLAGPLIGQLFALLFEKMIKSLTQHLEKRL 422

Query: 412  AKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRAN 471
                   +         +  L+   +T+GL  +  TG WS   +   + +G+   L R  
Sbjct: 423  KDGNIDQMAKSAADLTRQGVLNFKSITSGLEYSIGTGNWSVQRQAGSK-AGVSQMLNRLT 481

Query: 472  PLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST 531
             L TL +LRRT   +   GK+   R+ H +HWG IC + TP+G++CGL+KNL +  +V+ 
Sbjct: 482  FLSTLSNLRRTNTPIGRDGKLTGPRHLHNTHWGYICPVETPEGQSCGLIKNLALMSIVTV 541

Query: 532  S----ILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKR 587
            +      + I   L ++G   +       +    K+F++G W G+  D+   +  L  +R
Sbjct: 542  NRELEAGDAITRILEDTGTIPIQQITPDQIKDSTKIFLNGAWYGIHTDAYDLMETLLSER 601

Query: 588  RRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMG---KIKSLEGKNYTFQALLD 644
            R  ++P+ V         E+ I+ D GRI RP+L+V +M    K   L  +N  ++ L  
Sbjct: 602  RSLKIPSDVSFVHHIRDQEIFIWTDGGRITRPVLIVNDMHLTLKKSVLYDENTNWKVLRY 661

Query: 645  HGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIK-FTHCELDMSFLLGLSCGIIPFANH 703
             G++E +  +EEE    A     L ++      +K +THCE+  S + G+   IIPF +H
Sbjct: 662  KGMVEYLDIDEEETKLIALSPADLEENRNSPTGVKTYTHCEIHPSLIFGVCGTIIPFPDH 721

Query: 704  DHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHN 763
            + + R  YQ      QAIG  TTN  IR+D+ SH L+YPQ+PL  T            + 
Sbjct: 722  NQSPRNTYQC-AMGKQAIGLYTTNYMIRMDSSSHVLWYPQKPLVATR-----------NM 769

Query: 764  HILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYK--AEVDNKE 821
              L   +L  G N  VA+  + GYNQEDSL++N ++++RG+FRS   R+YK  AE D  E
Sbjct: 770  RYLNFNKLPAGINVTVAICCYTGYNQEDSLMLNASAIDRGLFRSYFFRTYKETAEGDGTE 829

Query: 822  MQVKRRSSDDMVNFGKIQS----KIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA-- 875
                   + ++  F   Q+    K+     +D DG    GA + + D++IGK +      
Sbjct: 830  ------GASEVFTFPDPQTVKGIKLHDSSKIDADGLAIPGAVVSAQDVIIGKISPDSPTE 883

Query: 876  -------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKG 928
                   D S  ++  E G+V  V+ +        + V  RQ+R P +GDKF S HGQKG
Sbjct: 884  LDHRQYKDTSCVVRPMETGVVDLVLRTITKKNLQLARVRTRQMRRPEIGDKFCSRHGQKG 943

Query: 929  VLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKR 988
            V G    QE+ PFT  G+VPDI++NPHA PSR T G L+E  LGK  A   +    G   
Sbjct: 944  VCGMTYRQEDMPFTRDGMVPDIIMNPHALPSRMTIGHLIECLLGKCTAIDPQNADEG--- 1000

Query: 989  YATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDK 1048
             ATPF   +VDAI ++L  AGF K+G E LY+GR+G+ +++ I+ GPT+YQRL HM  DK
Sbjct: 1001 DATPFCGVTVDAIAKRLQDAGFEKYGNETLYNGRSGKRLKAKIYFGPTYYQRLKHMVGDK 1060

Query: 1049 VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHI 1108
               R  G    + RQPV  R R GG++FGEMERDCLIAHG +A + +RL   SD Y + +
Sbjct: 1061 AHARALGRKSLILRQPVDGRARNGGLRFGEMERDCLIAHGVSAMMRDRLLENSDRYFVPV 1120

Query: 1109 CRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
            C+ C  +A  I++  G         C  C     + K  +PY  KL+ QEL SM I  + 
Sbjct: 1121 CKTCGLIA--IEKTDGTME------CPACQDEGRLAKVEMPYAFKLVIQELMSMCIAPRL 1172

Query: 1169 D 1169
            +
Sbjct: 1173 N 1173


>gi|401884833|gb|EJT48974.1| DNA-directed RNA polymerase II subunit RPB2 [Trichosporon asahii var.
            asahii CBS 2479]
          Length = 1732

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 381/1149 (33%), Positives = 577/1149 (50%), Gaps = 143/1149 (12%)

Query: 28   KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMR 87
            K   SFF+E GLV  Q+ S+NEF++N +Q+  D      ++     +     E R   + 
Sbjct: 38   KVINSFFDEKGLVRQQLESFNEFVENTMQELVDENQRLTLDQHTQHTGVMGDETRRYEIT 97

Query: 88   FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
            FGQ+ L K +    +G     +FP+ ARL+N+TY++ + V ++    +   V  D  +  
Sbjct: 98   FGQIYLAKVAMTEMDG-QTVGLFPQEARLRNLTYAAPLYVDMKKSTLSAGDV-DDPIEAD 155

Query: 148  REQYIQKE--VLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIK 199
             +  +     +   E   I IG++PVMV+S+ C + G+         +C +D GGYFII 
Sbjct: 156  WKPAVDANGVMQGAEEDKIWIGKVPVMVRSNFCLLHGLPDDHFYALNECPYDQGGYFIIN 215

Query: 200  GAEKVFVAQEQICLKRLWVSNSMGWT-VAYKSE---------NKRNRLIVRLVDMSKFED 249
            G+EKV +AQE++    ++V      + V Y SE            ++ +V++   ++ + 
Sbjct: 216  GSEKVLIAQERMAANTVYVFKKADPSPVIYLSEVTSQMEKGGKTPSKTVVKMYLRAQDKA 275

Query: 250  IKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFA------S 303
              G    + + +  T+IPI I+F ALG+  D+++++ I F   D ++L +L        S
Sbjct: 276  TTGSVIRVQLPYTKTDIPIVIVFRALGIVPDRDVLSHICFNPNDTAMLEMLRPCIEEAFS 335

Query: 304  IHDADNKCDEF-RKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLG 362
            I D D   D   R+G+          KGT                        +KA FLG
Sbjct: 336  IQDRDTALDFIGRRGQQE--------KGTR---------------------ASRKAFFLG 366

Query: 363  YMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGD 422
            YM+  L  A  GRR+ D+RD F  KRL+LAG LL    ++      + + + LQ+ +   
Sbjct: 367  YMIHRLCSAALGRRELDDRDHFGKKRLDLAGPLLANLFRILFKKLTRDVYRHLQKCVETH 426

Query: 423  RTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
            +    +   +   I+TNGL  + +TG W    K  +  +G+   L R     TL  LRRT
Sbjct: 427  KEFTLVNA-IKPGIITNGLKYSLATGNWGDQAKAMQARAGVSQVLNRYTFASTLSHLRRT 485

Query: 483  RQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQL 541
               +   GK+   R  H +HWG IC   TP+G+ CGLVKNL +   +S  S   P+ E L
Sbjct: 486  NTPIGRDGKIAKPRQLHNTHWGLICPAETPEGQACGLVKNLALMSYISVGSYSAPVMEFL 545

Query: 542  FNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
               G+E    D   S     KVFV+G W+G+ +D++     L   RR  +L  +V I RD
Sbjct: 546  EEWGLE--PQDEYGSAPNATKVFVNGVWMGIHRDAVKLHENLLEMRRGGQLKHEVSIVRD 603

Query: 602  ELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNY-----------------TFQALLD 644
              + E+R++ DAGR+ RPL +V+   +   L+ ++                   +  LL 
Sbjct: 604  IRERELRLYTDAGRVCRPLFIVDRPTQTLRLKREHIDRLENIADGLEEAVDGSAWDELLY 663

Query: 645  HGIIELVGTEEEEDCCTAWGIKYL--------------------LKDIEDKKPIK----- 679
             G+IE V  EEEE    A   + L                    L+  +    +K     
Sbjct: 664  QGVIEYVDAEEEETILIAMTSEDLENARMYESPQEVARAQAAHTLEAFDPTARVKSSSWS 723

Query: 680  --FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSH 737
              +TH E+  S +LG+   I+PF +H+ + R  YQS     QA+G   TN  +R+DT+++
Sbjct: 724  QNYTHMEIHPSMILGVCASIVPFPDHNQSPRNTYQS-AMGKQAMGIHLTNYQLRMDTMAN 782

Query: 738  QLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNR 797
             L+YPQ PL  T                L   +L  GQNAIVA+  + GYNQEDS++MN+
Sbjct: 783  ILYYPQSPLATTQ-----------SMKYLKFSDLPAGQNAIVAILCYSGYNQEDSVIMNQ 831

Query: 798  ASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVD---SLDDDGFP 854
            +S++RG+FRS + R+Y        MQ K  S +       ++ K G  D    LD+DG  
Sbjct: 832  SSIDRGLFRSLYYRAYTDTEKMVGMQ-KVESFEKPDRNETLRMKHGSSDRYAKLDNDGLI 890

Query: 855  FIGANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDD 899
                N+   DI+IGK A                +  D S  +K TE+G+V +V++++N D
Sbjct: 891  TPATNVNGDDIIIGKTAPIPPDSEELGQRSATHTKRDVSTPMKSTEQGVVDQVMITTNAD 950

Query: 900  GKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPS 959
            G  F  + +R  R P +GDKF+S HGQKG +G    QE+ PFT +GI PDI+INPHA PS
Sbjct: 951  GLKFVKIRIRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPS 1010

Query: 960  RQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLY 1019
            R T G L+E  L K +A L     +G +  ATPF   +V+++++ L + G+   G E +Y
Sbjct: 1011 RMTIGHLVECLLSK-LATL-----TGREGDATPFTELTVESVSKLLRQRGYQSRGLEVMY 1064

Query: 1020 DGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEM 1079
             G TG+ +R+ ++ GPT+YQRL HM +DK+  R  GP+  LTRQPV  R R GG++FGEM
Sbjct: 1065 HGHTGKKLRAQVYFGPTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEM 1124

Query: 1080 ERDCLIAHG 1088
            ERDCL  HG
Sbjct: 1125 ERDCL--HG 1131



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 11/89 (12%)

Query: 1082 DCLIAHGAAANLHERLFTLSDSYQMHICRKC--KNVANVIQRVVGGGRKVRGPYCRICDS 1139
            +C+I+HG A  L ER++  SD++++H+C +C    VAN+         K +  +C +C +
Sbjct: 1646 NCMISHGIAGFLKERMYESSDAFRLHVCDQCGLMAVANL---------KKQEFHCSVCRN 1696

Query: 1140 GDDIVKANVPYGAKLLCQELFSMGITLKF 1168
               I +  +PY AKLL QEL +M +T++ 
Sbjct: 1697 STQISQIYIPYAAKLLFQELQAMNVTVRM 1725


>gi|330040234|ref|XP_003239811.1| DNA-directed RNA polymerase II second largest subunit [Cryptomonas
            paramecium]
 gi|327206736|gb|AEA38913.1| DNA-directed RNA polymerase II second largest subunit [Cryptomonas
            paramecium]
          Length = 1209

 Score =  560 bits (1444), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 384/1262 (30%), Positives = 604/1262 (47%), Gaps = 208/1262 (16%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPS---KKGEGEWRYASMRF 88
            S+F E  ++  Q+ S+N+F++N +Q   D     +V    D     K+   +     +R 
Sbjct: 18   SYFEENSIIKQQLESFNDFVQNKMQDIVDDLPPIVVSYKVDKLTDFKENFLQNMKKILRL 77

Query: 89   GQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGR 148
            GQ+ L KP+F   +G   H + P  ARL++++YSS +   +     T   VT++  K   
Sbjct: 78   GQLHLSKPTFIEEDGVI-HTLLPNEARLRSLSYSSPLYCDISV---TTVNVTNEHEKERE 133

Query: 149  EQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFIIKGAE 202
              + Q      E   I++GRIP+M+KS  C +  +        G+C+ D GGYFII G+E
Sbjct: 134  LNFKQ------EKQKILLGRIPIMIKSRFCILDKLLPMTLQNLGECNLDLGGYFIINGSE 187

Query: 203  KVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKG---------- 252
            KV VAQE+           M W   Y  E K+       VD S F D+K           
Sbjct: 188  KVIVAQEK-----------MAWNYVYVFEKKKEN---NSVDKSFFLDLKNLFFAECRSIS 233

Query: 253  -----------------------------------GEKVLSVY--FLSTEIPIWILFFAL 275
                                               G+  + V   +  +++P+  +F AL
Sbjct: 234  EFGKWSPSLTIIKICLNKFRKKKIAKKENSFSHFTGKFYIRVVLPYFKSDVPVTWIFKAL 293

Query: 276  GVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPP 335
            G   + EI   I + C D +                       N ++ V  ++K   F P
Sbjct: 294  GFEDETEI---IPYICYDNT---------------------NENLIELVRNILKDDHFVP 329

Query: 336  GESTEEC-----------MNTYLFPSLHGTK------------------------QKARF 360
                 +C           +  ++F + HGT+                        +K  F
Sbjct: 330  DNLKNDCFRLDQETSLALIGQHIFKASHGTRIRYAYEILQREFLPHVGIGQGFELRKGFF 389

Query: 361  LGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLY 420
             GYMV  LL    G +K D+RD +  KRL+    LL    +  +  A K +  +L++   
Sbjct: 390  FGYMVNKLLLVQLGNKKVDDRDHYGYKRLDTVSPLLSVLFRQLVNKATKDLRMSLEKKTN 449

Query: 421  GDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLR 480
             ++    I      +++T G+  + +TG WS   +  +  +G+   L R N + TL  LR
Sbjct: 450  LEKNTFQISDIFKFNLITTGMFYSLATGNWSTNGQTMK--TGVSQVLNRINYMSTLSHLR 507

Query: 481  RTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFE 539
            +         K+   R  H ++WG IC + TP+G +CGLVKNL ++  ++  S   P+FE
Sbjct: 508  KINSTGINVSKLTKPRQLHNTYWGLICPVETPEGHSCGLVKNLAISAYITLGSSSMPVFE 567

Query: 540  QLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIK 599
             L    ++   +    ++   +K+F++  WIGV     +    LR  RR      ++ + 
Sbjct: 568  FLEELKIKNFNEIKVQNIRFYYKIFLNDCWIGVYDKPDTIAKTLRCFRRSGNTNQELSVI 627

Query: 600  RDELQSEVRIFMDAGRILRPLLVVE-------NMGKIKSLEGKNY-----------TFQA 641
                  E++I+ DAGR+ RPL+V E       N   +KS+    Y           TF  
Sbjct: 628  IFHKDKEIKIYTDAGRVCRPLIVSELVKFNKKNQYIVKSISVNQYNFDVLTIGNKCTFTE 687

Query: 642  LLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFA 701
            L+ +G+IE +  EEE+ C     +   +K+I +   I FTH E+  S ++G+    IPF+
Sbjct: 688  LIRNGLIEFIDAEEEKTCVIGMYVFEGIKNINNL--ITFTHFEIHPSMIMGICASFIPFS 745

Query: 702  NHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYG 761
            +H+ + R  YQ+     Q+IG  + N   R+DT++H L+YPQ+PL  T   +      Y 
Sbjct: 746  HHNQSPRNTYQAA-MGKQSIGIYSLNFQHRMDTMAHILYYPQKPLVTTRFLN------YS 798

Query: 762  HNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKE 821
             +   P     NG NAIVA   + GYNQEDS++M++ S++RG+FRS   R Y+ E   K 
Sbjct: 799  ASKNFP-----NGINAIVATACYTGYNQEDSIIMSQDSIDRGLFRSVFYRCYRDEEKKKT 853

Query: 822  MQVKRRSSDDMVNFGK-IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA--------- 871
               K   + ++ N  + I  KIG  + LD DGF   G+ +   D++IGK           
Sbjct: 854  NGFKE--TFEIPNKSECIGLKIGSYEKLDLDGFVQEGSRISGEDVIIGKTVPFTNGISQK 911

Query: 872  ---------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSS 922
                         D SI  ++ E G+V K+++ +++ G     + +R +R P +GDKF+S
Sbjct: 912  KILKFKKNPKYKKDASILARNCEVGVVDKIMIGTSEYGNRLVKIRIRSIRIPQVGDKFAS 971

Query: 923  MHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGI 982
             HGQKG+LG    Q + PFT +G+ PDI++NPHA PSR T G + E  L K I+A+    
Sbjct: 972  RHGQKGILGMAYKQYDLPFTTEGMSPDIIMNPHAIPSRMTIGHVYECLLAK-ISAI---- 1026

Query: 983  CSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLI 1042
             SG++   TPF++ S++ I + L   G+ K G E + +G TG+ +++LIFIGPT+YQ+L 
Sbjct: 1027 -SGIEGDGTPFSSISIEKIMKHLKNYGYDKSGWEAMINGFTGKFLKNLIFIGPTYYQKLK 1085

Query: 1043 HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSD 1102
            HM +DK+  R+ GPV  LTRQPV  R R+GG++FGEMERDC+++HG+   L +RL   SD
Sbjct: 1086 HMVDDKIHSRSRGPVQILTRQPVEGRSRYGGLRFGEMERDCILSHGSIVFLKDRLLDQSD 1145

Query: 1103 SYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSM 1162
             + + +C  C  +A        G RK++   CR CD+   I    +PY  KLL QEL ++
Sbjct: 1146 PFVIFVCDLCGLIA-------IGNRKLKIFECRSCDNKMFISLIKIPYACKLLLQELIAL 1198

Query: 1163 GI 1164
             I
Sbjct: 1199 SI 1200


>gi|347522774|ref|YP_004780344.1| DNA-directed RNA polymerase subunit B [Pyrolobus fumarii 1A]
 gi|343459656|gb|AEM38092.1| DNA-directed RNA polymerase subunit B [Pyrolobus fumarii 1A]
          Length = 1168

 Score =  559 bits (1440), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 409/1222 (33%), Positives = 606/1222 (49%), Gaps = 182/1222 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYA----SMR 87
            +FF+EYGL    I+SYN F++  L +   S+  ++++ G        G+++       ++
Sbjct: 20   AFFDEYGLTKQHIDSYNRFLERDLLEIIKSY--SVIDVG--------GQYKLEIVLDGIK 69

Query: 88   FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
             G   L  P    G+G +  D+ P   R++++TY + ++V+V+                 
Sbjct: 70   SGLELLGPPMVREGDGSERTDVTPLECRIRDLTYEAPIRVRVR----------------- 112

Query: 148  REQYIQKEVLSDETTNIIIGRIPVMVKSDL---------------CWMKGVEKGDCDFDH 192
                + + V+ DE   +++G +P+M++S                 C+   ++KG+   D 
Sbjct: 113  ----LIEGVVVDEQ-EVVLGMLPIMLRSKADPLARCFYERGNVKECYELLIQKGEDPRDP 167

Query: 193  GGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWT-VAYKSE------NKRNRLIVRLVDMS 245
            GGYFII G+E+V V QE+  + R+ V      T V + ++        R +LI+   DM 
Sbjct: 168  GGYFIINGSERVVVIQEEQVVNRVLVDKGRQQTGVKFTAKVISFHAGLRYQLIL---DMH 224

Query: 246  KFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIH 305
            K      G   +S+    T+IP  IL  ALG+  D++IV  I     D  I N+L+ S+ 
Sbjct: 225  K-----DGTLHVSMTRAITKIPFVILLRALGLERDRDIVLAI---STDPEIQNMLYPSLE 276

Query: 306  DADNKCDEFRKGRNALKYVDKLIKGTTFPPGES----TEECMNTYLFPSLHGTK-----Q 356
             A     +    + AL+++    +     P E      E  ++ +L P L GT+     +
Sbjct: 277  QARAIATQ----KEALEFIGARFREGIGKPSEQRIRVAEHALDNFLLPHL-GTRPEDRLR 331

Query: 357  KARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQ 416
            KA FL  M + LL+  +GRR+ D++D + NKRL LAG+L+    +  +    + +   L+
Sbjct: 332  KALFLADMARKLLELAAGRRQPDDKDHYANKRLLLAGDLIAIVFRTAMRSLYQDIRSQLE 391

Query: 417  RDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTL 476
            R     + + P    +   I+TN L  A +TG W  P +RT    G+   L R N L  L
Sbjct: 392  RAKARGKRISP-RTVIRRDIITNKLHDALATGNW--PGQRT----GVSQLLDRTNWLSML 444

Query: 477  VDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEP 536
              LRR    +  +    +AR  H +HWG+IC   TP+G NCGLVKNL +   +S  + E 
Sbjct: 445  SHLRRVVSPLSRSQPHFEARDLHGTHWGRICPFETPEGPNCGLVKNLALMAYISAGVDEK 504

Query: 537  IFEQLFNSGME---------KLADDASYS--------LGGKF-KVFVDGDWIGVCKDSLS 578
              E++     E         KL +    S        +  K+ +V+++G  IG   D   
Sbjct: 505  EVEKVIRENFEIIDAEELLRKLIETEDVSEFLPYYMEVTSKYTRVYINGRLIGYYPDGEK 564

Query: 579  FVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIK-------S 631
               E+RR RR  +L  +V +      +E+ +  D GR+LRPL VVEN GK+K        
Sbjct: 565  LAQEIRRLRREGKLHYEVNVAYYRDVNELYVNTDPGRVLRPLFVVEN-GKLKLKPEHIEK 623

Query: 632  LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLL 691
            ++   + F  LL HGI+EL+  EEEE+        Y+  + ED  P + TH E+    + 
Sbjct: 624  IKKGEWKFTDLLKHGIVELLDAEEEENA-------YVALNPEDITP-EHTHMEIWTPAIF 675

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G++   IP+A H+ + R  YQ+   + QA+G    N  IR DT  H L YP++PL +T  
Sbjct: 676  GVTASTIPYAEHNQSPRNTYQAAM-AKQALGLYAANFQIRADTRGHLLHYPEKPLVQTRA 734

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
             D +G      N+   RP    GQN +VAV    GYN ED+++MN++S++RG+ RS   R
Sbjct: 735  LDIIG-----FNN---RP---AGQNMVVAVLSFTGYNIEDAIIMNKSSIDRGLARSTFFR 783

Query: 812  SYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVD--------------SLDDDGFPFIG 857
             Y  E    E +      D +      Q + G +D               LD DG     
Sbjct: 784  LYATE----ERKYSGGQKDLLGCIDDPQRRPGCIDIKSIIDAKPPIAYRKLDIDGIVSPE 839

Query: 858  ANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKN 902
              ++SG+++IGK A               +   D S+ ++H ERG V  V ++  ++G  
Sbjct: 840  VEVESGEVLIGKTAPPKFSEEFREIAVSTERRRDESVSVRHGERGTVDTVFITETNEGFK 899

Query: 903  FSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQT 962
               V +R +R P  GDKF+S HGQKGV+GFL  Q + PFT  GI PD++INPHAFPSR T
Sbjct: 900  LVKVRVRDLRIPEFGDKFASRHGQKGVIGFLVPQYDMPFTEDGITPDLIINPHAFPSRMT 959

Query: 963  PGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGR 1022
             GQLLE   GK +AAL   +       ATPF    V+ +  +L + GFS  GTE +YDGR
Sbjct: 960  LGQLLETIAGK-VAALSARLID-----ATPFFKEPVENLQLELLKYGFSPDGTEIMYDGR 1013

Query: 1023 TGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1082
            TGEM+R  +FIG  +YQ+L HM  DK+  R TG    LTRQP   R R GG++FGEMERD
Sbjct: 1014 TGEMLRHPVFIGIVYYQKLHHMVADKIHARATGQTQLLTRQPTEGRARGGGLRFGEMERD 1073

Query: 1083 CLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDD 1142
            CL+ HGAA  L ER+   SD Y M++C  C ++A          R  R   C I      
Sbjct: 1074 CLVGHGAAMLLRERMLESSDKYVMYVCELCGHIAWF-------DRNRRAFVCPIHKEEGK 1126

Query: 1143 IVKANVPYGAKLLCQELFSMGI 1164
            I    VPY  KLL QEL SMGI
Sbjct: 1127 ISIVVVPYAFKLLLQELMSMGI 1148


>gi|407852465|gb|EKG05946.1| DNA-directed RNA polymerase III subunit, putative [Trypanosoma cruzi]
          Length = 1186

 Score =  558 bits (1438), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 408/1203 (33%), Positives = 606/1203 (50%), Gaps = 128/1203 (10%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIV--EPGYDPSKKGEGEWRYASMRFG 89
            SFF E GLV  QI+SYN+F+   + +   S  E +   +  ++P  + E E     +   
Sbjct: 45   SFFREKGLVHQQIDSYNDFLLR-IPRMARSLLEVVPRQDEQFEPGTQTETEPDQYRLSLE 103

Query: 90   QVTLDKPSF-FAGNGGDE-HDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
             V +  PS   +G    E H +FP   RL+++TY +  +V +  +VY             
Sbjct: 104  DVVIGNPSHEVSGFSRHEMHPLFPNECRLRDLTYDANAQVTLGIRVYR-----------S 152

Query: 148  REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGA 201
            RE+   +  L     N+ +GRIP+M+KS  C ++  ++       +C  D GGYF+I G 
Sbjct: 153  REEQPYRTFLQ----NMELGRIPIMLKSMRCNLQNKDEDELPRLNECPHDQGGYFVISGT 208

Query: 202  EKVFVAQEQICLKRLWV-SNSMGWTVAYKS--ENKRN--RLIVRLVDMSKFEDIKGGEKV 256
            EKV +AQE+     ++  S   G     KS  E   N  R +  L+   K     G E +
Sbjct: 209  EKVLIAQERQAANHVYAFSRQKGLLCEIKSIVEGSLNKPRTLQILMPYKKKGPGHGYENL 268

Query: 257  LS-VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFR 315
            L  V  +   IP+++LF AL + SDKEI+  +    +D ++L +L  S+ DA     +  
Sbjct: 269  LCRVAQMDELIPLFVLFRALDMGSDKEILQTVVPDLKDAAMLEMLRGSMEDASTL--QIF 326

Query: 316  KGRNALKYVDKLI--KGTTFPPGESTEECMNTYLFPSL----HGTKQKARFLGYMVKCLL 369
                AL ++ K +  + +        +  +   L P +       + K  F+GYMV  LL
Sbjct: 327  TRDEALWFIGKRLGKQDSRENLQRDAQGLLMRDLLPHMGVDCAADRSKCLFIGYMVHRLL 386

Query: 370  QAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIE 429
                GRR+  +RD   +KR+++AG LL  +L   +   RK M K +         V    
Sbjct: 387  LLALGRREDTDRDFLGHKRIDVAGALLTFQLNQFLVQVRKEMVKTVHDYSTNRGGVVSFG 446

Query: 430  YYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYT 489
              L + ++T+GL R  +TG +    K     +G+   L R     +L +LRR +  +  +
Sbjct: 447  RILHSRLITDGLRRCLATGNFGD-MKSGNIKTGVAQTLNRLTYSSSLSNLRRIQNPISAS 505

Query: 490  GKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVS-----TSILEPIFEQLFNS 544
             K    R  H + WG IC + TP+G + GL+KNL +  L+S     T +++ +  ++   
Sbjct: 506  SKATKPRNLHCTQWGYICPVETPEGGSIGLLKNLALMCLISRGSDHTGVVQAVQARITGF 565

Query: 545  GMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQ 604
                L   A   +    +VFV+G  IGV +D    + ELR +RR  EL  +V I RD   
Sbjct: 566  HSIDLPGLADVRVA---RVFVNGTLIGVHRDPERLLRELRARRRGGELSNEVSIVRDIRD 622

Query: 605  SEVRIFMDAGRILRPLLVVE---------NMGKI----KSLEGK-NYTFQALLDHGIIEL 650
             E+R+F D GR LRPL VVE          +G++    K+L GK   ++  ++  G +EL
Sbjct: 623  REIRVFSDGGRCLRPLFVVERSRIKLQKTGIGELLEPSKTLGGKREISWNRIIKKGYVEL 682

Query: 651  VGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVL 710
            +  EEE+    A  +       E  K   ++HCE+D S +LG+   IIP+ NH+ + R  
Sbjct: 683  IDCEEEDSLLIAMTM------TEVSKNYYYSHCEMDPSMILGICASIIPYPNHNQSPRNT 736

Query: 711  YQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPE 770
            YQS     QA+G   +N ++R+DT +H LFYPQ+PL RT          Y  ++ LP   
Sbjct: 737  YQS-AMGKQAMGIYASNFNMRMDTTAHVLFYPQKPLVRTKAM------SYMRSNDLP--- 786

Query: 771  LYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSD 830
               G NA+VA+  + GYNQEDS++M+R+++ERG FRS   RSYKA         + R  D
Sbjct: 787  --AGHNAVVAIACYSGYNQEDSIIMSRSAVERGFFRSAFWRSYKA--------TEERKKD 836

Query: 831  DMVNFGKIQSKIGRVD-----SLDDDGFPFIGANLQSGDIVIGKYA-------DSGA--- 875
                F     KI RV       LD DG    G  +  GDI++GK         ++ A   
Sbjct: 837  VRETFENPDRKICRVKRADYTKLDADGLIKPGMPVIGGDILVGKTIPISEAKLENAALDD 896

Query: 876  ------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGV 929
                  D SI  + +E+G+V++V+L+ N  G  F+ V +R ++ P +GDKF S HGQKG 
Sbjct: 897  TRLLKRDCSIASRTSEKGVVERVMLTENS-GNRFTKVKIRTIKIPNIGDKFCSRHGQKGT 955

Query: 930  LGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRY 989
             G    QE+ PF   GIVPD++INPHA PSR T   L+E   GK     G  +      Y
Sbjct: 956  NGIQFRQEDMPFNRDGIVPDLIINPHAIPSRMTVAHLIETLAGKVACYKGSEV------Y 1009

Query: 990  ATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKV 1049
            ATPF +  V+   + LH+  F ++G E LY+G TG  +  LIF GPT+YQRL H+S DK+
Sbjct: 1010 ATPFCSVVVEDFGKALHQLKFQRYGNECLYNGHTGSPLDHLIFFGPTYYQRLKHLSGDKI 1069

Query: 1050 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHIC 1109
              R  GP+ PL RQP   R   GG++FGEMERDC++++GA+  L ERLF +SD Y +H+C
Sbjct: 1070 HARPRGPLQPLVRQPTEGRAHEGGLRFGEMERDCMLSYGASQWLRERLFRVSDYYSVHVC 1129

Query: 1110 RKCKNV--ANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLK 1167
              C  +  A+  Q V           C+ CD+   I +  +PY  KLL QEL SM I  +
Sbjct: 1130 NICGTICAADTEQNVYK---------CQGCDNDTRISQTLMPYACKLLFQELMSMAILPR 1180

Query: 1168 FDT 1170
              T
Sbjct: 1181 LGT 1183


>gi|418204392|gb|AFX61750.1| RNA polymerase II second-largest subunit, partial [Ascosphaera
            torchioi]
          Length = 1137

 Score =  556 bits (1434), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 390/1165 (33%), Positives = 581/1165 (49%), Gaps = 152/1165 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGE--WRYASMRFG 89
            SFF   GLVS Q++S++EFI   +Q+  +  G+  ++    P +        R   ++FG
Sbjct: 5    SFFETKGLVSQQLDSFDEFISTTMQELVEEQGQVTLDQTLAPEEDEVDPVVLRRYELKFG 64

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT-QKRVTSDKFKT-- 146
             V L +PS   G+G     M P+ ARL+N+TYSS + + +  ++   ++R+ S++     
Sbjct: 65   TVMLGRPSMTEGDGATS-IMLPQEARLRNLTYSSPLYLSITKRITEGRERLISERDDDDQ 123

Query: 147  ----------GREQYIQKE--VLSD---ETTNIIIGRIPVMVKSDLCWMKGVEK------ 185
                      GR  Y+  E   L+D   E  N+ IG++P+M+KS  C +K + +      
Sbjct: 124  VEDDIDDSGKGRGTYLHWEPKTLADDDPEEENVFIGKMPIMLKSKYCILKDLNEQSLYNW 183

Query: 186  GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKRNRLIVR 240
             +C +D GGYFII G+EKV +AQE+     + V      +   +    +S  ++   I+ 
Sbjct: 184  NECPYDSGGYFIINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSAVEKGSRILS 243

Query: 241  LVDMSKF---EDIKGG--EKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDC 294
             + +  F   +  KGG    + S   ++ T+IPI ++F ALGV SD++I+N I +   D 
Sbjct: 244  QLSIKLFAKGDSSKGGFGSTIRSTLPYIRTDIPIVVVFRALGVVSDEDILNHICYDRNDT 303

Query: 295  SILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYL 347
             +L +L   I +     D       AL ++ K  +GT+ P   + E       E +    
Sbjct: 304  PMLEMLKPCIEEGFVIQDR----EVALDFISK--RGTS-PTTMNHEKRVRYAREIIQKEF 356

Query: 348  FPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVH 403
             P +  ++    +KA FLGYMV  LLQ   GRR  D+RD F  KRL+LAG LL    +  
Sbjct: 357  LPHISQSEGSETRKAFFLGYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLAGLFRTL 416

Query: 404  IAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGI 463
                 K + K +QR +  +R +  +   + AS L+ GL  A +TG W    K     +G+
Sbjct: 417  FMRLTKDLYKYVQRCVETNRQLY-LNIGVKASTLSGGLKYALATGNWGEQKKAASSKAGV 475

Query: 464  VANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNL 523
               L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL
Sbjct: 476  SQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 535

Query: 524  GVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSE 582
             +   ++  +  EPI + +    ME L +          KVFV+G W+GV +D    VS 
Sbjct: 536  ALMCSITVGTPSEPIIDFMIQRNMEVLEEYEPQVSPNATKVFVNGVWVGVHRDPAHLVST 595

Query: 583  LRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------------I 629
            ++  RRR  +  +V + RD    E +IF DAGR+ RPL VV+N  K             I
Sbjct: 596  VQSLRRRNMISHEVSLVRDIRDREFKIFTDAGRVCRPLFVVDNDPKSENCGSLALTKEHI 655

Query: 630  KSLEG---------------KNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIED 674
              LE                + + +  L+  G+IE V  EEEE       I    +D+E 
Sbjct: 656  HKLEADKELPPDLDPEERRERYFGWDGLVKSGVIEYVDAEEEETIM----IVMTPEDLET 711

Query: 675  KKPI----------------------------KFTHCELDMSFLLGLSCGIIPFANHDHA 706
             K I                             FTHCE+  S +LG+   IIPF +H+ +
Sbjct: 712  SKQIAAGMMPEEYDAHADPNRRVRSQLTQKAHTFTHCEIHPSMILGICASIIPFPDHNQS 771

Query: 707  RRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHIL 766
             R  YQS     QA+G   TN   R++T+++ ++YPQ+PL  T   +            L
Sbjct: 772  PRNTYQS-AMGKQAMGVFLTNFDQRMETMANIIYYPQKPLATTRSME-----------FL 819

Query: 767  PRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKR 826
               EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R+Y        + V  
Sbjct: 820  KFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVE 879

Query: 827  RSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD-------------- 872
            R    + +   ++ K G  D LD DG    G  +   DI+IGK A               
Sbjct: 880  RFEKPLRS-DTLRMKHGTYDKLDHDGIVCPGVRVSGEDIIIGKTAPLAPESEEQGMRTKS 938

Query: 873  -SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLG 931
             +  D S  L+ TE G+V +V+LS+++D   F  V +R  + P +GDKF+S HGQKG +G
Sbjct: 939  HTKLDVSTPLRSTENGIVDQVLLSTSNDDLKFVKVRMRATKVPQIGDKFASRHGQKGTIG 998

Query: 932  FLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYAT 991
                QE+ PFT +GIVPD++INPHA PSR T   L+E  L K ++AL      G +  AT
Sbjct: 999  ITYRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLSK-VSAL-----RGFEGDAT 1052

Query: 992  PFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKF 1051
            PF   +VD+++  L   G+   G E +Y+G TG  + + +F+GPT+YQRL HM +DK+  
Sbjct: 1053 PFTDVTVDSVSGLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHA 1112

Query: 1052 RNTGPVHPLTRQPVADRKRFGGIKF 1076
            R  GP   LTRQPV  R R GG++F
Sbjct: 1113 RARGPTQILTRQPVEGRARDGGLRF 1137


>gi|145525932|ref|XP_001448777.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124416343|emb|CAK81380.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1203

 Score =  555 bits (1431), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 399/1213 (32%), Positives = 614/1213 (50%), Gaps = 133/1213 (10%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIV--EPGYDPSKKGEGEWRYA-SMRFG 89
            FF  +GLVS QINSY  F++N ++      G  +V  +P Y   ++ + +  Y    +  
Sbjct: 40   FFQTHGLVSQQINSYESFVENIIKYVRGHEGTFVVRVKPQYKEEERMDAQTEYLYQFQIQ 99

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
            +  + K +        E ++FP  ARL+++TYS ++K+ ++  V  Q+R   D    G  
Sbjct: 100  RCFMGKKNIHIDKF--EEEIFPMIARLRDLTYSRQLKIDLE--VTMQQRNKRD----GSI 151

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWM-----------KGVEKGDCDFDHGGYFII 198
            +   K+        +   ++P+MV+S  C +           + ++ G+C FD GGYFI+
Sbjct: 152  EEKSKQTFK----GLPFFKLPIMVRSRFCSLPKDPKDPEQIQQRIQSGECGFDQGGYFIL 207

Query: 199  KGAEKVFVAQEQICLKRLWVSNSM----GWTVAYKSE----NKRNRLIVRLVDMSKFEDI 250
            +G+EKV VAQE+I    + V  S      W    +S+    +  N   V L  +     I
Sbjct: 208  RGSEKVIVAQERIANNVVLVFKSKIVNKPWVAEIRSQPDLWSNPNNFKVELRYIQNTPVI 267

Query: 251  KGGEKVLSVYFLSTE-IPIWILFFALGVSSDKEIVNLIDFTCED---CSILNILFASIHD 306
            +   K     F ST+ IP++ LF ALG+SSD+EI+  I +  ED     +L +L+ S+ +
Sbjct: 268  RCSVK----QFNSTQGIPLFTLFRALGISSDQEILERIVYNLEDEQMGPMLEMLYGSLQE 323

Query: 307  ADNKCDEFRKGRNALKYV-DKLIKGTTFPPGESTEEC---MNTYLFP----SLHGTKQKA 358
                  E+      L+++ +K+ K     P    +E    +N  + P    S     +KA
Sbjct: 324  GG----EYEDEELCLRWIGNKIKKAENQDPETLIQEAKKLINKNILPHIGVSSESRDRKA 379

Query: 359  RFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRD 418
             F+GY+V  LL A  G+   D+RD +  KRL++AG ++    K      ++   KAL++ 
Sbjct: 380  YFIGYIVHRLLNASLGKTDQDDRDHYGKKRLDMAGAMMMGVFKTSFESFKQNAKKALEKY 439

Query: 419  LYGDRTVRP--IEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPL-QT 475
            + G+   +P  I+ + D   ++  +  A +TG W    +     +G+   L R   L  T
Sbjct: 440  INGENMRQPDDIKSFFDGEQISKDIDNALATGNWGRSKEGQVVKTGVAQTLKRETSLFAT 499

Query: 476  LVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE 535
            L  LRR    +    K+   R  H +H+G IC   TP+G+  G+VKNL +   VS  + +
Sbjct: 500  LSHLRRMNAPINPQMKLSKPRQLHNTHFGFICPAETPEGQKIGIVKNLSLMTAVSNDLQQ 559

Query: 536  PIFEQLFNSGMEKLADDASYSL-GGKF---------KVFVDGDWIGVCKDSLSFVSELRR 585
               E L    M    D   + L  G F         KV VDG+WIG  ++   F+ E + 
Sbjct: 560  KDKETLLKLIMVLKQDVFDFQLLQGDFQAQDIPKMTKVLVDGNWIGFTRNPEQFIQEFKN 619

Query: 586  KRRRKE--LPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE-NMGKIKSLEGKNYT-FQA 641
             R  +E  +P +V I  D +  E+RI+ DAGR +RPL +V+ N  K+K  +  ++T ++ 
Sbjct: 620  LRSAEESFIPIEVSINFDYVNKEIRIYTDAGRCMRPLFIVQDNKLKLKKNQLNSFTDWEQ 679

Query: 642  LLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFA 701
            LL +  +EL+  EEEE    A  +  + +  ++ K  ++THCE+    + G+   +IPFA
Sbjct: 680  LLQNKCVELLDVEEEEGSLIAMDLNIMTRGTQNFK--RYTHCEIHPCMMFGVCASVIPFA 737

Query: 702  NHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYG 761
            NH+   R   QS     QA+G  +TN +IR DTL H L YPQ+PL  +   D        
Sbjct: 738  NHNQGPRNTLQS-AMGKQAMGLNSTNFNIRFDTLVHILHYPQKPLASSKAVD-------- 788

Query: 762  HNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDN-- 819
                +   E+  G N + ++    GYNQEDS+++N+ +++RG FRS   R+YK   D   
Sbjct: 789  ---FITVNEVPIGINCVTSIACFTGYNQEDSIIINQYAIDRGFFRSVFYRTYKESEDKDP 845

Query: 820  ---KEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGF-----------PFIGANLQSGDI 865
                E ++ +   D+    GK+  K      LD DG            P IG  L   +I
Sbjct: 846  DNFTETKITKPLGDNYA--GKLFIK------LDSDGIVPPGTKVDEEEPIIGKELIIDNI 897

Query: 866  VIGKY--ADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSM 923
            ++       +  + S+  +  ERG+V  V++S N  G     V +R +R P +GDKF S 
Sbjct: 898  MLNTANGQKNTKECSLLTRRAERGVVDSVLISENQKGYKLVKVKVRSLRIPQIGDKFCSR 957

Query: 924  HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGIC 983
            HGQKG  G    QE+ PFT+ GI PD+ INPH  PSR T G L+E  L   +A++     
Sbjct: 958  HGQKGTCGMTYRQEDLPFTLVGISPDLTINPHCIPSRMTIGHLIEC-LSSKLASI----- 1011

Query: 984  SGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIH 1043
             G    ATPFA  SV+ I  +LH  G+ KWG E + +  +G M +  IF+GPT+YQRL H
Sbjct: 1012 KGQFNDATPFAQISVNDIANKLHEVGWQKWGNEVMTNPYSGNMFQIPIFVGPTYYQRLRH 1071

Query: 1044 MSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDS 1103
            + +DK+  R+ GPV  +TRQP   R R GG++FGEMERDC+I+HG A  L ER + +SD+
Sbjct: 1072 LVDDKMYARSRGPVTGITRQPTHGRSRKGGLRFGEMERDCIISHGTAKFLKERTYDVSDA 1131

Query: 1104 YQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRIC---DSGDDIVKANVPYGAKLLCQE 1158
            +++H+C KC    VAN+  +           YC IC   +  + I +  +PY AK L QE
Sbjct: 1132 FRVHVCSKCGLFAVANLENQEF---------YCNICKNTNQQNQIYQVLMPYAAKTLIQE 1182

Query: 1159 LFSMGIT--LKFD 1169
            L SM I   LKFD
Sbjct: 1183 LISMNIAPRLKFD 1195


>gi|390337473|ref|XP_003724570.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB2-like [Strongylocentrotus purpuratus]
          Length = 1142

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 400/1223 (32%), Positives = 612/1223 (50%), Gaps = 177/1223 (14%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPS 74
            DL  +  +  C     S+F+E GLV  Q++S++EFI+  +Q+   DS    +       +
Sbjct: 16   DLTPDQWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAVDLQAEAQHMT 75

Query: 75   KKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVY 134
             + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +     
Sbjct: 76   TEQEVPTRYL-LKFEQIYLSKPTHWEKDGSPS-PMMPNEARLRNLTYSAPLYVDI----- 128

Query: 135  TQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDC 188
                 T    K G +    +E +  +T    IG+IP+M++S  C + G+      E  +C
Sbjct: 129  -----TKTVIKDGEDP---QETIHQKT---FIGKIPIMLRSTYCLLNGLTDRDLTELNEC 177

Query: 189  DFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVRL 241
              D GGYFII G+EKV +AQE++    ++V        A+ +E       + R    + +
Sbjct: 178  PLDPGGYFIINGSEKVLIAQEKMSTNSVYVFAKKDSKYAFTAECRSCLEHSSRPTSTLWV 237

Query: 242  VDMSK----FEDIKGGEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
              M+K          G++++SV  ++  E+PI ++F ALG  +D++I+  I +  +D  +
Sbjct: 238  HMMAKGGQGARKSAIGQRMISVLPYIRQEVPIMVVFRALGFVADRDILEHIIYDFDDPEM 297

Query: 297  LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
            + ++  S+ +A      +    F   R A         +KY  ++++    P    ++ C
Sbjct: 298  MEMVKPSLDEAFVIQEQSVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFC 357

Query: 343  MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                         +KA FLGY V  LL A  GRR+ D+RD + NKRL+LAG LL    + 
Sbjct: 358  -----------ETKKAYFLGYCVHRLLLASIGRREVDDRDHYGNKRLDLAGPLLAFLFRA 406

Query: 403  HIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISG 462
               +  K +    Q+ +   +    +E  +   I+T+GL  + +TG W            
Sbjct: 407  LFKNLLKEVRMYAQKFIDKGKDFN-MELAIKTRIITDGLKYSLATGNWGD---------- 455

Query: 463  IVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKN 522
                                 Q+  +  + G ++  H  H   + +     G   GLVKN
Sbjct: 456  ---------------------QKKAHQARAGVSQVRHILHSFIVYYHK---GHAVGLVKN 491

Query: 523  LGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVS 581
            L +   +S  S   PI E L    ME L + A  ++    K+FV+G W+G+ +D    ++
Sbjct: 492  LALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAINEATKIFVNGCWVGIHRDPEQLMN 551

Query: 582  ELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKS 631
             L++ RR+ ++  ++V + RD  + E+RIF DAGRI RPLL+VEN         +  +K 
Sbjct: 552  TLKKLRRQMDIIVSEVSMVRDIREREIRIFTDAGRICRPLLIVENQKLLLKKRHVSMLKE 611

Query: 632  LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKP---IKFTHCELDMS 688
             E  NY++Q L+  G++E + T EEE    A        D+++K       +THCE+  S
Sbjct: 612  REYNNYSWQDLVASGVVEYIDTMEEETVMLAM----TPDDLQEKGMGYCSTYTHCEIHPS 667

Query: 689  FLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFR 748
             +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YPQ+PL  
Sbjct: 668  MILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNYHVRMDTLAHVLYYPQKPLTT 726

Query: 749  TMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSE 808
            T   +            L   EL  G N++VA+  + GYNQEDS+++N ++++RG FRS 
Sbjct: 727  TRSME-----------YLRFRELPAGINSVVAIASYTGYNQEDSVILNASAIDRGFFRSV 775

Query: 809  HIRSYK-AE---VDNKEM--QVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQS 862
              RSYK AE   VD  EM  +  R +   M N           D L++DG    G+ + S
Sbjct: 776  FYRSYKDAESKAVDKDEMFEKPSRETCQGMRN--------AVYDKLEEDGIIPPGSRV-S 826

Query: 863  GD----IVIGKYAD-------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSV 905
            G+    I +  Y               +  D S  ++ TE G++ +V++S N DG  F  
Sbjct: 827  GNRDFXICVNXYVXRPFKALEGTSRRFTKRDCSTFMRSTETGIIDQVMVSINQDGYKFCK 886

Query: 906  VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 965
            + +R VR+P +GDKF+S HGQKG  G     E+ PFT +GI PDI+INPHA PSR T G 
Sbjct: 887  IKVRSVRTPQIGDKFASRHGQKGTCGIKYRVEDMPFTCEGITPDIIINPHAIPSRMTIGH 946

Query: 966  LLEAALGKGIAALGKGICSGLKRYATPFA-TPSVDAITEQLHRAGFSKWGTERLYDGRTG 1024
            L+E   GK   +  KG        ATPF  + +V  I+  LH  G+ + G E L+ G TG
Sbjct: 947  LIECLQGK--VSSSKGEIGD----ATPFNDSVNVQKISNLLHEYGYHQRGNEVLFCGFTG 1000

Query: 1025 EMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL 1084
              + + +F+GPT+YQRL HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC 
Sbjct: 1001 RKIGTQVFLGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQ 1060

Query: 1085 IAHGAAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDD 1142
            I+HGAA  L ERLF +SD Y++H+C  C    +AN+               CR C +   
Sbjct: 1061 ISHGAAQFLRERLFEVSDPYRVHVCNFCGLIAIANLRNNTFE---------CRGCKNKTQ 1111

Query: 1143 IVKANVPYGAKLLCQELFSMGIT 1165
            I +  +PY  KLL QEL SM I 
Sbjct: 1112 ISQVRLPYACKLLFQELMSMCIA 1134


>gi|407404199|gb|EKF29761.1| DNA-directed RNA polymerase III subunit, putative, partial
            [Trypanosoma cruzi marinkellei]
          Length = 1194

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 406/1203 (33%), Positives = 606/1203 (50%), Gaps = 128/1203 (10%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIV--EPGYDPSKKGEGEWRYASMRFG 89
            SFF E GLV  QI+SYN+F+   + +   S  E +   +  ++P  + E E     +   
Sbjct: 53   SFFREKGLVHQQIDSYNDFLLR-IPRMARSLLEIVPRQDEQFEPGTQTETEPDQYRLSLE 111

Query: 90   QVTLDKPSF-FAGNGGDE-HDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
             V +  PS  F+G    E H +FP   RL+++TY +  +V +  +VY             
Sbjct: 112  DVVIGNPSHEFSGFSRHEMHPLFPNECRLRDLTYDANAQVTLGIRVYR-----------S 160

Query: 148  REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGA 201
            RE+   +  L     N+ +GRIP+M+KS  C ++  ++       +C  D GGYF+I G 
Sbjct: 161  REEQPYRTFLQ----NMELGRIPIMLKSMRCNLQNKDEDELPRLNECPHDQGGYFVISGT 216

Query: 202  EKVFVAQEQICLKRLWV-SNSMGWTVAYKS--ENKRN--RLIVRLVDMSKFEDIKGGEKV 256
            EKV +AQE+     ++  S   G     KS  E   N  R +  L+   K     G E +
Sbjct: 217  EKVLIAQERQAANHVYAFSRQKGLLCEIKSIVEGSLNKPRTLQILMPYKKKGPGHGYENL 276

Query: 257  LS-VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFR 315
            L  V  +   IP+++LF AL + SDKEI+  +    +D ++L +L  S+ DA     +  
Sbjct: 277  LCRVAQMDELIPLFVLFRALDMGSDKEILQTVVPDLKDAAMLEMLRGSMEDASTL--QIF 334

Query: 316  KGRNALKYVDKLI--KGTTFPPGESTEECMNTYLFPSL----HGTKQKARFLGYMVKCLL 369
                AL ++ K +  + +        +  +   L P +       + K  F+GYMV  LL
Sbjct: 335  TRDEALWFIGKRLGKQDSRENLQREAQALLMRDLLPHMGVDCAADRGKCLFIGYMVHRLL 394

Query: 370  QAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIE 429
                GRR+  +RD   +KR+++AG LL  +L   +   RK M K +         V    
Sbjct: 395  LLALGRREDTDRDFLGHKRIDVAGALLTFQLNQFLVQVRKEMIKTVHDYSTNRGGVVGFG 454

Query: 430  YYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYT 489
              L + ++T+GL R  +TG +    K     +G+   L R     +L +LRR +  +  +
Sbjct: 455  RILHSRLITDGLRRCLATGNFGD-MKSGNIKTGVAQTLNRLTYSSSLSNLRRIQNPISAS 513

Query: 490  GKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVS-----TSILEPIFEQLFNS 544
             K    R  H + WG IC + TP+G + GL+KNL +  L+S     T +++ +  ++   
Sbjct: 514  SKATKPRNLHCTQWGYICPVETPEGGSIGLLKNLALMCLISRGSDHTGVVQAVQARITGF 573

Query: 545  GMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQ 604
                L   A   +    +VFV+G  IGV +D    + ELR +RR  EL  +V I RD   
Sbjct: 574  HSIDLPGLADVRVA---RVFVNGTLIGVHRDPERLLRELRARRRGGELSNEVSIVRDIRD 630

Query: 605  SEVRIFMDAGRILRPLLVVE---------NMGKI----KSLEGK-NYTFQALLDHGIIEL 650
             E+R+F D GR LRPL VVE          +G++    K+  GK   ++  ++  G +EL
Sbjct: 631  REIRVFSDGGRCLRPLFVVERSRIKLQKTGIGELLEPSKTPGGKREISWNRVIKKGYVEL 690

Query: 651  VGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVL 710
            +  EEE+    A      +   E  K   ++HCE+D S +LG+   IIP+ NH+ + R  
Sbjct: 691  IDCEEEDSLLIA------MTTTEVSKNYYYSHCEMDPSMILGICASIIPYPNHNQSPRNT 744

Query: 711  YQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPE 770
            YQS     QA+G   +N ++R+DT +H LFYPQ+PL RT          Y  ++ LP   
Sbjct: 745  YQS-AMGKQAMGIYASNFNMRMDTTAHVLFYPQKPLVRTKAM------SYMRSNDLP--- 794

Query: 771  LYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSD 830
               G NA+VA+  + GYNQEDS++M+R+++ERG FRS   RSYKA         + R  D
Sbjct: 795  --AGHNAVVAIACYSGYNQEDSIIMSRSAVERGFFRSAFWRSYKA--------TEERKKD 844

Query: 831  DMVNFGKIQSKIGRVD-----SLDDDGFPFIGANLQSGDIVIGK---YADSGADH----- 877
                F      I RV       LD DG    G  +  GDI++GK     ++  ++     
Sbjct: 845  VRETFENPDPNICRVKRADYTKLDTDGLIKPGMPVMGGDILVGKTIPIPEAAQENTAMKN 904

Query: 878  --------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGV 929
                    SI  + +E+G+V+KV+L+ N+ G  F+ V +R ++ P +GDKF S HGQKG 
Sbjct: 905  KRLLKRECSIASRTSEKGVVEKVMLTENN-GNRFTKVKVRTIKIPNIGDKFCSRHGQKGT 963

Query: 930  LGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRY 989
             G    QE+ PF   GIVPD++INPHA PSR T   L+E   GK     G  +      Y
Sbjct: 964  NGIQFRQEDMPFNRDGIVPDLIINPHAVPSRMTVAHLIETLAGKVACYKGSEV------Y 1017

Query: 990  ATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKV 1049
            ATPF +  V+   + LH+  F ++G E LY+G TG  +  LIF GPT+YQRL H+S DK+
Sbjct: 1018 ATPFCSVVVEDFGKALHQLKFQRYGNECLYNGHTGSPLDHLIFFGPTYYQRLKHLSGDKI 1077

Query: 1050 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHIC 1109
              R  GP+ PL RQP   R   GG++FGEMERDC++++GA+  L ERLF +SD Y +H+C
Sbjct: 1078 HARPRGPLQPLVRQPTEGRAHEGGLRFGEMERDCMLSYGASQWLRERLFRVSDYYSVHVC 1137

Query: 1110 RKCKNV--ANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLK 1167
              C  +  A+  Q V           C+ CD+   I +  +PY  KLL QEL SM I  +
Sbjct: 1138 NICGTICAADTEQNVYK---------CQGCDNDTRISQTLMPYACKLLFQELMSMAILPR 1188

Query: 1168 FDT 1170
              T
Sbjct: 1189 LGT 1191


>gi|300122083|emb|CBK22657.2| unnamed protein product [Blastocystis hominis]
          Length = 1194

 Score =  553 bits (1424), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 390/1206 (32%), Positives = 601/1206 (49%), Gaps = 138/1206 (11%)

Query: 48   NEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEH 107
            N  I+  ++   D   E I E  Y      + +    S+    V   +P+  +       
Sbjct: 2    NRTIEQQIRDQSDRGIEAISEGQYTTIADNDEDQIKISITMDGVKASRPTVASTGAEQSS 61

Query: 108  DMFPRHARLQNMTYSSRMKVKV-QFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIII 166
             ++PR ARL+N+TY++ + V + Q  V+ +   + D                 ++ +I +
Sbjct: 62   VLWPREARLRNLTYAASIYVGMTQTSVHIKGNESDDAVS--------------KSMDIRL 107

Query: 167  GRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-- 218
              IPVM++S+ C + G++       G+C +D GGYFII G+EK  +AQE+    +++V  
Sbjct: 108  CTIPVMLRSEACNLYGLDDERRASIGECIYDQGGYFIINGSEKAIIAQERQTTNKVYVFE 167

Query: 219  ---SNSMGWTVAYKSENK-----RNRLIVRLVDMSKFEDIKGGEKVLS-VYFLSTEIPIW 269
                +   WT   +S  +        L++ +   S    IK    + + +  LS EIP+ 
Sbjct: 168  KKQPSKYSWTAEIRSVPEGSSVPAQTLMLCMYAHSSKSQIKNKYCIWAKLPTLSDEIPVC 227

Query: 270  ILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYV----D 325
            ILF ALG  +D+ I+  I +  +D  ++     S+ +A     E R    AL ++     
Sbjct: 228  ILFRALGCENDRSIIQHICYNFDDVEMMERFRPSLVEAS----ECRTREVALNFIATRHP 283

Query: 326  KLI-KGTTFPPGESTE---ECMNTYLFPSLH------GTKQKARFLGYMVKCLLQAYSGR 375
            K+I +  T P  E  +     +   + P ++         +KA +LGYMV  LL     R
Sbjct: 284  KMIDENGTRPRSERVKFASRLLQKIMLPHINVDFGPNSNCKKAFYLGYMVHKLLNCSLNR 343

Query: 376  RKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDA- 434
             + ++RD   NKR++LAG ++ R     +    K +   +++ +   +    I    +A 
Sbjct: 344  NEQEDRDHISNKRMDLAGPMIGRLFHGLLYRFTKELRSHMKKVVNSRKGSSFINIMTNAK 403

Query: 435  -SILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVG 493
             SI+++GL  +F+TG W    +     +G+  +L R     +L  LRR +  +  T KV 
Sbjct: 404  SSIISDGLKYSFATGNWGDRSRGMPTTTGVSQSLNRLTYASSLSSLRRLKSPIDTTSKVT 463

Query: 494  DARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTS-----------ILEPIFEQLF 542
              R  H + WG +C   TP+G++CG+VKNL +   +S              +E I+  L 
Sbjct: 464  KPRLLHSTQWGMMCPAETPEGQSCGIVKNLALMCYISVGNPVGAAGARDWQVEKIYRLLE 523

Query: 543  NSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
            N+G+E+L   AS  +    KVFV+G W+G+ +D    +        R++  T V +  D 
Sbjct: 524  NNGVEELETIASSLIPKTTKVFVNGVWVGIHRDPKVILDH------REDFDTDVSMVYDI 577

Query: 603  LQSEVRIFMDAGRILRPLLVVENMG---KIKSLEGKNY----TFQALLDHGIIELVGTEE 655
             + E+RI  DAGR  RPL VV+ +    KI+    +N      F  L+ + +IE V  EE
Sbjct: 578  QERELRITADAGRCCRPLYVVDPITQRVKIRKYHLRNLQPETMFSDLVLNRLIEYVSAEE 637

Query: 656  EEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQK 715
            EE C     +K +   +E++    +THCE+  S +LG+   IIPF +H+ + R  YQS  
Sbjct: 638  EEYCMIGMDLKTMRACVENRSCTTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-A 696

Query: 716  HSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQ 775
               QA+G   +N   R+DT +H L YPQ+PL  T                L   EL  G 
Sbjct: 697  MGKQAMGVYVSNYRQRMDTTAHVLSYPQQPLVTTKAMT-----------YLRFKELPAGC 745

Query: 776  NAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYK------------AEVDNKEMQ 823
            N +VA+  + GYNQEDSL++N++++ERG+FRS   R+Y+              + N  M 
Sbjct: 746  NCVVAICCYSGYNQEDSLILNQSAIERGLFRSIFYRTYQDTEVRRDTTTSSLSLSNPSMG 805

Query: 824  VKR--RSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSG------- 874
             +R  R   +  +  K +   G   +LD+DG    G+ +    I+IGK   +G       
Sbjct: 806  NERFCRPLSEQCSMTKDE---GLYRNLDEDGLVKPGSRVTGDSILIGKATPTGELNVHGR 862

Query: 875  ---ADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLG 931
                D+S  L+H E G+V +V+L++N+ G  F  V +R VR P +GDK SS HGQKG +G
Sbjct: 863  SNLKDNSTGLRHAESGIVDEVMLTTNEKGFRFVKVKVRSVRVPQIGDKLSSRHGQKGTIG 922

Query: 932  FLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYAT 991
                QE+ PFT  GIVPDI++NPHA PSR T GQL+E  LGK +AAL      G     T
Sbjct: 923  MTYRQEDMPFTENGIVPDIIMNPHAIPSRMTIGQLIECLLGK-VAALQAREGDG-----T 976

Query: 992  PFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKF 1051
             F+  +V+ I+ +LH  G+ K G E LY+G TG  + + +F+GPTFYQRL H+ +DK+  
Sbjct: 977  AFSDVTVEDISNKLHNEGYQKRGYEVLYNGHTGRRMEARVFMGPTFYQRLKHLVDDKIHA 1036

Query: 1052 R----NTGP---VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSY 1104
            R    NT P   +HP TRQP+  R R GG++ GEMERD LIA+GA+  + ER F  SD+Y
Sbjct: 1037 RARGMNTKPGRILHP-TRQPLEGRSRDGGLRMGEMERDVLIAYGASQLVRERFFYSSDAY 1095

Query: 1105 QMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
             + IC  C  +  +I              C+ CD+     K  +PY  KLL QEL SM I
Sbjct: 1096 VVTICDDCGLICTMIDNTY---------ICKNCDNKTRFSKVEIPYACKLLFQELMSMNI 1146

Query: 1165 TLKFDT 1170
              +  T
Sbjct: 1147 APRIHT 1152


>gi|325969565|ref|YP_004245757.1| DNA-directed RNA polymerase subunit beta [Vulcanisaeta moutnovskia
            768-28]
 gi|323708768|gb|ADY02255.1| DNA-directed RNA polymerase subunit beta [Vulcanisaeta moutnovskia
            768-28]
          Length = 1141

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 385/1201 (32%), Positives = 606/1201 (50%), Gaps = 173/1201 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFD--SFGETIVEPGYDPSKKGEGEWRYASMRFG 89
            +F +E GLV HQI+S+N+F++  LQ+  +  S  ET V+  Y              ++  
Sbjct: 43   AFISEGGLVRHQIDSFNDFVEKKLQEVVNENSLIETEVKGLY--------------IKLE 88

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
            ++ + KP     +   EH ++P  ARL+N+TY++ + + +                    
Sbjct: 89   RIEVGKPRVREADAS-EHILYPMEARLRNLTYAAPLYLTMVL------------------ 129

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG-------DCDFDHGGYFIIKGAE 202
             Y+  E +  +   + IG +P+M+KS  C + G+++        D D D GGYFII G+E
Sbjct: 130  -YVNDEEVDRQ--KVYIGDLPIMIKSKFCNLYGLKRQELISKLEDPD-DPGGYFIINGSE 185

Query: 203  KVFVAQEQICLKRLW---------------VSNSMGWTVAYKSENKRNRLIVRLVDMSKF 247
            +V V+QE +   + +               +S   G+      E  R+ +I         
Sbjct: 186  RVIVSQEDLAPNKPFFDKGDKASITNVAKVISIGAGYKTTVTVERHRDGIIY-------- 237

Query: 248  EDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA 307
                     ++   ++T IP  I+  ALG+ +D++IV  +    +D  I N L  S+  +
Sbjct: 238  ---------VTFPAIATRIPFPIIMRALGLETDEDIVLAV---SDDPDIQNELLPSLQFS 285

Query: 308  DNKCDEFRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLHGTKQ---- 356
                       +AL ++     G+    G+  E       + ++ Y  P L  T++    
Sbjct: 286  VQIASTID---DALDFI-----GSKVAIGQPREVRIERAKQVLDRYFLPHLGATEEARVK 337

Query: 357  KARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQ 416
            KA  +G MVK +++ Y GRR+ D++D   NKR+ L G+LL +  +       + + + L+
Sbjct: 338  KALLVGQMVKGVIEMYLGRRQPDDKDHIANKRVRLVGDLLAQLFRAVFKQVLQDIRQQLE 397

Query: 417  RDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTL 476
            R  Y    +  +   + A I+T  +  A +TG W     RT    G+   L R N L TL
Sbjct: 398  RH-YSRGKIPSLVTLVRADIITERIRHALATGNWIG--GRT----GVSQMLDRTNVLSTL 450

Query: 477  VDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEP 536
              LRR    +  T    +AR  HP+ WG++C + TP+G+NCGLVKNL +   ++  + E 
Sbjct: 451  SHLRRIVSNLSRTQPHFEARDLHPTQWGRLCAIETPEGQNCGLVKNLALLSTITVGVNEN 510

Query: 537  IFEQ-LFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQ 595
              E+ L++ G+  +       + G  +V+++G  IG+  +    V  +R  RRR ++  +
Sbjct: 511  EVEKMLYDLGVVPILKARKEGVKGT-EVYLNGRLIGIHTEPEKLVGTVREMRRRGQISHE 569

Query: 596  VEIKR--DELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHG 646
            + I R  +E   E+R+  D GR+ RPLL++E+ GK       I+ L    +++  L+ +G
Sbjct: 570  INIARIQNEYLDELRVNCDGGRLRRPLLIIED-GKPRLKPEHIERLRKGEWSWSDLISNG 628

Query: 647  IIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHA 706
            IIE +  +EEE+   A      +   ED    K+TH E+  S ++G    +IP+A H+ +
Sbjct: 629  IIEYLDGDEEENALVA------INPEEDMS--KYTHMEIIPSVMIGAVASVIPYAEHNQS 680

Query: 707  RRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHIL 766
             R +Y++   + Q++GFP  N   R+D+  H L YP+RPL  T         G   N  L
Sbjct: 681  PRNIYEA-AMAKQSLGFPAANYRFRMDSRGHLLIYPERPLVITR--------GMELNGYL 731

Query: 767  PRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKR 826
             RP    GQNA+VA+  + GYN ED++++NR+S+ERGM+RS   R+Y+ E    +M+   
Sbjct: 732  GRPA---GQNAVVALLTYTGYNMEDAVILNRSSIERGMYRSVFFRTYETE----QMRYPG 784

Query: 827  RSSDDM-VNFGKIQSKIG--RVDSLDDDGFPFIGANLQSGDIVIGK-------------- 869
               D + +   +++   G      LD+DG       +  G+++IGK              
Sbjct: 785  GEEDRIEIPSAEVRGYKGPEAYAHLDEDGIVSPEVFVSGGEVLIGKTSPPRFYGVYTEAV 844

Query: 870  YADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGV 929
             + +  D SI ++  E+G+V  VV++  ++G     V +R++R P LGDKF+S HGQKGV
Sbjct: 845  VSSARRDSSITVRRGEKGIVDSVVITETNEGYKLVKVKVRELRIPELGDKFASRHGQKGV 904

Query: 930  LGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRY 989
            +G +   ++ PFT  GI PDI++NPHA PSR T GQLLE+  GK +AAL      GL   
Sbjct: 905  MGMMIPMQDMPFTEDGITPDIIVNPHALPSRMTVGQLLESMAGK-VAAL-----RGLTID 958

Query: 990  ATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKV 1049
            ATPF   + + + + L R+GF   G E +Y G TG  + + IFIG  +YQ+L HM  DK+
Sbjct: 959  ATPFEGVTEEELRDLLIRSGFRWDGKEVMYSGLTGRKLEADIFIGVVYYQKLHHMVADKI 1018

Query: 1050 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHIC 1109
              R  GPV  LTRQP   R R GG++ GEMERD LIAHGAAA L ERL   SD Y M++C
Sbjct: 1019 HARARGPVQILTRQPTEGRSREGGLRLGEMERDVLIAHGAAALLKERLVESSDKYVMYVC 1078

Query: 1110 RKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFD 1169
              C  +A         G+    P C I      IV+  VPY  KLL  EL S+GI  + +
Sbjct: 1079 EDCGMIA---WYDANKGK----PVCPIHGDKGRIVRIVVPYAFKLLLHELMSLGIYPRIE 1131

Query: 1170 T 1170
             
Sbjct: 1132 A 1132


>gi|397576311|gb|EJK50184.1| hypothetical protein THAOC_30880 [Thalassiosira oceanica]
          Length = 1299

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 369/1133 (32%), Positives = 572/1133 (50%), Gaps = 140/1133 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP------GYDPSKKGEG----EW 81
            ++F E GLV  Q++S++EFI+N +Q+  D  G   V P      GYD     E       
Sbjct: 61   AYFEEKGLVRQQLDSFDEFIQNTMQELVDDSGSIRVSPEIQHTVGYDEDGFDEAMSSSTK 120

Query: 82   RYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTS 141
            +   ++FGQV L KP+    +G    +MFP  ARL+N+TY++ + V V    Y   RV S
Sbjct: 121  KVFEVKFGQVYLSKPTTVEKDG-TVTNMFPHEARLRNLTYAAPLYVDVTMNEY---RVPS 176

Query: 142  DKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGY 195
            D       + + + V ++E     +G +P+M++S  C +         + G+C +D GGY
Sbjct: 177  DANVADPAEEMGEPVSTEEARKEFLGYVPIMLRSLFCVLSDKDDAQLADLGECIYDQGGY 236

Query: 196  FIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSE-----NKRNRLIVRLVDMS 245
            F++ G+EKV VAQE++    ++       +   W +  +S+        + L +++    
Sbjct: 237  FVVNGSEKVIVAQERMSNNHVYAFRKKQPSKFSWVIETRSQVENSTRPTSTLYIQMYQKG 296

Query: 246  KFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIH 305
                I+G +   ++ ++ T+IP+ I+F ALG  +D++I+  + +   D  ++++   S+ 
Sbjct: 297  GKGAIEGNQIRSTLPYIRTDIPVVIIFRALGYVADRDIIEHVVYDLTDGEMMDLFRPSLE 356

Query: 306  DA-----DNKCDEF--RKGR-------NALKYVDKLIKGTTFPPGESTEECMNTYLFPSL 351
            ++          +F  R+G        + ++Y   +++    P   + E C         
Sbjct: 357  ESFVIQKQEVALDFIGRRGSARDVTKDDRIRYAAGILQREVLPHVGTEEHC--------- 407

Query: 352  HGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRM 411
                +K  FLGY V  LL    GR   D+RD F  KRL+LAG LL    +V      K +
Sbjct: 408  --ETKKGFFLGYAVHKLLMCRLGRVDEDDRDHFGKKRLDLAGPLLGGLFRVLFRKLTKDV 465

Query: 412  AKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERI----------- 460
             + LQR L   +    I   + ++ +T+GL  + +TG     +++ + I           
Sbjct: 466  RRHLQRCLDEGKHFN-IGAAIKSNHITDGLKYSLATGNCES-YRKNDCIFVFSCKPNNLM 523

Query: 461  ----------------SGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWG 504
                            +G+   L R     +L  LRR+   +  TGK    R  H SHWG
Sbjct: 524  RHLGRLEGGDKGATTKAGVSQVLNRLTYASSLSHLRRSNTPLARTGKQAKPRQLHNSHWG 583

Query: 505  KICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKLAD--DASYSLGGKF 561
             +C   TP+G+  GLVKN+ +   ++T   + P+ E L     E L D   +  +     
Sbjct: 584  MVCPCETPEGQAVGLVKNMALMAYITTGTSQVPVMEFLEEFSTENLTDILPSVIAESSTC 643

Query: 562  KVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLL 621
            K+FV+G+W+GV +D    V   R  RR  ++  +V I RD  +SEVRI+ DAGRI RPL 
Sbjct: 644  KIFVNGNWVGVHRDPRHLVHTFRSLRRMIDIDAEVSIVRDITESEVRIYTDAGRICRPLF 703

Query: 622  VV----------ENMGKIK--SLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLL 669
            +V           ++ +I+  S +GK  T+  LL  G++E V TEEEE    A       
Sbjct: 704  IVNEDQELAIKKHHISQIQGFSEDGKRLTWTDLLMEGLVEYVDTEEEETTMIAMEP---- 759

Query: 670  KDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPS 729
            KD+ +     +THCE+  S +LG+   IIPF +H+ + R +YQS     QA+G   +N  
Sbjct: 760  KDLGEGYSSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNVYQSAM-GKQAMGIYASNYQ 818

Query: 730  IRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQ 789
            +R+DT++H L YPQ+PL  T   +            L   EL +G N +VA+ ++ GYNQ
Sbjct: 819  VRMDTMAHVLHYPQKPLCTTRAME-----------FLKFRELPSGVNVVVAIMIYTGYNQ 867

Query: 790  EDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQ------SKIG 843
            EDSL+MN+++++RG+FRS + R Y  +   K   V    + +   F K         K G
Sbjct: 868  EDSLIMNQSAIDRGLFRSSYYRCYNDQ--EKAASVGSVGALNSETFEKPTMDNTRGMKYG 925

Query: 844  RVDSLDDDGFPFIGANLQSGDIVIGKYADSGA-----------DHSIKLKHTERGMVQKV 892
              + LD+DG    G  +   D++IGK   + A           D S  +K TE G+V  V
Sbjct: 926  DYNKLDEDGLVAPGTRVSGDDVLIGKTTPTEALANAPSRYTKRDCSTSMKATESGIVDNV 985

Query: 893  VLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVI 952
            ++S+  +G  F+ V +R VR P +GDKF+S HGQKG +G    QE+ PFT +GIVPDI++
Sbjct: 986  LISTTKEGYRFTKVRIRNVRVPQVGDKFASRHGQKGTVGMTYRQEDMPFTCEGIVPDIIV 1045

Query: 953  NPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSK 1012
            NPHA PSR T  QL+E  LGK   A+ +G C G    ATPF    VD +  +LH  G+ +
Sbjct: 1046 NPHAIPSRMTIAQLIECILGK--VAVFQG-CEG---DATPFTDVHVDDVASRLHAMGYQR 1099

Query: 1013 WGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPV 1065
             G E +Y G TG  + + +FIGPTFYQRL H+ +DK+  R  GPV  LTRQP+
Sbjct: 1100 HGNEHMYQGHTGRPLNARVFIGPTFYQRLKHLVDDKIHSRARGPVAMLTRQPL 1152


>gi|145512048|ref|XP_001441946.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124409207|emb|CAK74549.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1214

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 397/1230 (32%), Positives = 612/1230 (49%), Gaps = 146/1230 (11%)

Query: 28   KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIV--EPGYDPSKKGEGEWRYA- 84
            K    FF  +GLVS QI SY  F++N ++      G  +V  +P Y   ++ E    Y  
Sbjct: 35   KVLQMFFQTHGLVSQQIGSYESFVENVIKFVRGHEGTFVVRVKPQYKEEERQEAYLEYLY 94

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKF 144
              +  +  + K +        E ++FP  ARL+++TYS ++K+ ++  +  + +      
Sbjct: 95   QFQITRCFMGKKNIHVDKF--EEEIFPMIARLRDLTYSRQLKIDLEVTMQQRNKRDGTIE 152

Query: 145  KTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG-----------VEKGDCDFDHG 193
            +  ++Q+            +   ++P+MV+S  C ++            ++ G+C FD G
Sbjct: 153  EKSKQQF----------KGLPFFKLPIMVRSRFCSLQKDPKDAELIQLRIQNGECGFDQG 202

Query: 194  GYFIIKGAEKVFVAQEQICLKRLWVSNSM----GWTVAYKSE----NKRNRLIVRLVDMS 245
            GYFI++G+EKV VAQE+I    + V  S      W    +S+    +  N   V L  + 
Sbjct: 203  GYFILRGSEKVIVAQERIANNVVLVFKSKIVNKPWVAEIRSQPDLFSNPNVFKVELRYIQ 262

Query: 246  KFEDIKGGEKVLSVYFLSTE-IPIWILFFALGVSSDKEIVNLIDFTCED---CSILNILF 301
                I+   K     F ST+ IP++ LF ALG+SSD+EI+  I +  ED     +L +L+
Sbjct: 263  NTPVIRCSVK----QFNSTQGIPLFTLFRALGISSDQEILERIVYNLEDEFMGPMLEMLY 318

Query: 302  ASIHDADNKCDEFRKGRNALKYV-DKLIKGTTFPPGESTEEC---MNTYLFP----SLHG 353
             S+ +     DE       L+++ +K+ K     P    +E    +N  + P    S   
Sbjct: 319  GSLQEGGEYEDE----ELCLRWIGNKIKKAENQDPETLIQEAKKLINKNILPHIGVSTES 374

Query: 354  TKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAK 413
              +KA FLGY+V  LL A  G+   D+RD +  KRL++AG ++    K      ++   K
Sbjct: 375  RDRKAYFLGYIVHRLLNASLGKTDQDDRDHYGKKRLDMAGAMMMGVFKTSFEQFKQNSKK 434

Query: 414  ALQRDLYGDRTVR-------------PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERI 460
            AL++ + G R  R              I+ + D   ++  +  A +TG W    +     
Sbjct: 435  ALEKYINGGRRGRGQQTKIENMRQPDDIKSFFDGEQISKDIDNALATGNWGRSKEGQVVK 494

Query: 461  SGIVANLGRANPL-QTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGL 519
            +G+   L R   L  TL  LRR    +    K+   R  H +H+G IC   TP+G+  G+
Sbjct: 495  TGVAQTLKRETSLFATLSHLRRMNAPINPQMKLSKPRQLHNTHFGFICPAETPEGQKIGI 554

Query: 520  VKNLGVTGLVSTSILEPIFEQLFNSGMEKLADDASYSL-GGKF---------KVFVDGDW 569
            VKNL +   VS  +     E L    M    +D  + L  G F         KV VDG+W
Sbjct: 555  VKNLSLMTTVSNDLQSKDKETLLKLIMVSQQNDFDFILLQGDFQAQDIPRMTKVLVDGNW 614

Query: 570  IGVCKDSLSFVSELRRKRRRKE--LPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMG 627
            IG  ++   F+ E +  R  +E  +P +V I  D +  E+RI+ DAGR +RPL +V+N  
Sbjct: 615  IGFTRNPEQFIHEFKNLRSAEESYIPIEVSINFDYVNKEIRIYTDAGRCMRPLFIVQN-N 673

Query: 628  KIKSLEG---KNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCE 684
            K+K ++G   +   ++ LL +  +EL+  EEEE    A  I  +++  ++ K  ++THCE
Sbjct: 674  KLKLMKGVLNQINDWEELLKNKCVELLDVEEEEGSLIAMDIDIMMRGTQNFK--RYTHCE 731

Query: 685  LDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQR 744
            +    + G+   +IPFANH+   R   QS     QA+G  +TN +IR DTL H L YPQ+
Sbjct: 732  IHPCMMFGVCASVIPFANHNQGPRNTLQS-AMGKQAMGLNSTNFNIRFDTLVHILHYPQK 790

Query: 745  PLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGM 804
            PL  +   D            +   E+  G N + ++    GYNQEDS+++N+ +++RG 
Sbjct: 791  PLASSRAVD-----------FITVNEVPIGINCVTSIACFTGYNQEDSIIINQYAIDRGF 839

Query: 805  FRSEHIRSYKAEVDN-----KEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGF------ 853
            FRS   R+YK   D       E ++ +   D+    GK+  K      LD DG       
Sbjct: 840  FRSVFYRTYKESEDKDPDNFTETKITKPIGDNFA--GKLFIK------LDSDGIVPPGTK 891

Query: 854  -----PFIGANLQSGDIVIGKY--ADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVV 906
                 P IG  L   +I++       +  + S+  +  ERG+V  V++S N  G     V
Sbjct: 892  VDEEEPIIGKELIIDNIMLNTANGQKNTKECSLLTRRAERGVVDSVLISENQKGYKLVKV 951

Query: 907  SLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQL 966
             +R +R P +GDKF S HGQKG  G    QE+ P+T+ GI PD+ INPH  PSR T G L
Sbjct: 952  KVRSLRIPQIGDKFCSRHGQKGTCGMTYRQEDLPYTLVGISPDLTINPHCIPSRMTIGHL 1011

Query: 967  LEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEM 1026
            +E  L   +A++      G    ATPFA   V+ I  +LH+ G+ KWG E + +  TG M
Sbjct: 1012 IEC-LSSKLASI-----KGQFNDATPFAQILVNDIANELHKVGWQKWGNEVMTNPYTGNM 1065

Query: 1027 VRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIA 1086
                IF+GPT+YQRL H+ +DK+  R+ GPV  +TRQP   R R GG++FGEMERDC+I+
Sbjct: 1066 FSIPIFVGPTYYQRLRHLVDDKMYARSRGPVTGITRQPTHGRSRKGGLRFGEMERDCIIS 1125

Query: 1087 HGAAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRIC---DSGD 1141
            HG A  L ER + +SD++++H+C KC    VAN+  +           YC +C   ++ +
Sbjct: 1126 HGTAKFLKERTYDVSDAFRVHVCSKCGMFAVANLENQEF---------YCNLCKNQNNQN 1176

Query: 1142 DIVKANVPYGAKLLCQELFSMGIT--LKFD 1169
             I +  +PY AK L QEL SM I   LKFD
Sbjct: 1177 KIYQVQMPYAAKTLIQELISMNIAPRLKFD 1206


>gi|385301281|gb|EIF45483.1| dna-directed rna polymerase [Dekkera bruxellensis AWRI1499]
          Length = 1155

 Score =  550 bits (1417), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 380/1163 (32%), Positives = 575/1163 (49%), Gaps = 181/1163 (15%)

Query: 93   LDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKV----------------QFQVYTQ 136
            L KPS    +G     + P+ ARL+N+TYS+ + V++                Q Q Y +
Sbjct: 17   LSKPSQTEADGTTS-TLLPQEARLRNLTYSAPLYVEMKKMVKESIDDGTTSSSQLQWYKE 75

Query: 137  KRVTSDKFKTGREQYI----------QKEVLSD-----------ETTNIIIGRIPVMVKS 175
              +T  KF+ G               + EV+ +           ET  I IG++P+M+KS
Sbjct: 76   GEIT--KFRNGEIAEPAPIPADFNDDEDEVVEEKHGTKFHSSGAETQTIFIGKVPIMLKS 133

Query: 176  DLCWMKGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYK 229
              C + G+      E  +C +D GGYFII G+EKV +AQE+     + V      +    
Sbjct: 134  KFCTLYGLTEDELYEIRECPYDMGGYFIINGSEKVLIAQERSAANIVQVFKKPAPSPISH 193

Query: 230  SENKRNRLI--VRLVDMSKFEDIKGGEKVL-----------SVYFLSTEIPIWILFFALG 276
                R+ L    RL+   + +  +GG   +           S+ ++ ++IPI I+F ALG
Sbjct: 194  VAEIRSALEHGSRLISSIQVKLTRGGASSMKNGGVGRSIKTSLPYIKSDIPIVIVFRALG 253

Query: 277  VSSDKEIVNLIDFTCEDCSILNILFASIHD-----ADNKCDEF--RKGRNALKYVDKLIK 329
            V  D +I+  I +   D  ++ +L   I +     +     +F  R+G       D+ I 
Sbjct: 254  VIEDGDILQHICYDENDWQMMEMLKPCIEEGFLIQSQEVALDFIGRRGNAVGIKRDRRI- 312

Query: 330  GTTFPPGESTEECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFR 385
                   +  ++ +     P +         KA FLGY+V  LL     RR+ D+RD F 
Sbjct: 313  -------QFAKDILQREFLPHISQDSGYETNKAYFLGYIVNRLLLCALERREPDDRDHFG 365

Query: 386  NKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAF 445
             KRL+LAG LL    ++      K + + +QR +        I   + ++ +T+GL  + 
Sbjct: 366  KKRLDLAGPLLANLFRILFRKLSKDIYRYMQRCIERGEDFN-IVSAVKSTTITSGLKYSL 424

Query: 446  STGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGK 505
            +TG W    K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG 
Sbjct: 425  ATGNWGEQKKAMSSRAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGL 484

Query: 506  ICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVF 564
            +C   TP+G+ CGLVKNL +   +S  +  EPI   L   G+E L+D          +VF
Sbjct: 485  VCPAETPEGQACGLVKNLSLMAGISVGTSSEPISYLLEEWGLEPLSDYDPQEHKNATRVF 544

Query: 565  VDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE 624
            ++G+W+G  +D    V  +R+ RR   +  +V + RD  + E +IF DAGR+ RPL +V+
Sbjct: 545  LNGNWVGTHRDPGMLVDTMRQLRRSGTISPEVSLVRDIREREFKIFTDAGRVYRPLFIVD 604

Query: 625  N----------------MGKIKSLEGKN--------------------YTFQALLDHGII 648
            N                + KI+  E +                     Y + +L+ +G++
Sbjct: 605  NDPDSPRKGNLKITKDDVRKIRDREVEEIAPEEDVDEDGNPAEPIRRVYGWDSLVTNGMV 664

Query: 649  ELVGTEEEEDCCTAWGIKYLLK----------DIEDKKPIK-------FTHCELDMSFLL 691
            E +  EEEE    A   + LL           +++  K IK       FTHCE+  + +L
Sbjct: 665  EYLDAEEEETTLIAMSPEDLLPMSKQDQRREVELDPAKRIKTHINSHSFTHCEIHPAMIL 724

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G++  IIPF +H+ + R  YQS     QA+G   TN ++R+DT+S+ L+YPQ+PL +T  
Sbjct: 725  GVAASIIPFPDHNQSPRNTYQS-AMGKQAMGVYLTNYNVRMDTMSNILYYPQKPLAKTQS 783

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
             +            L   EL  GQN IVA+  + GYNQEDS++MN++S++RG+FRS   R
Sbjct: 784  ME-----------FLKFRELPAGQNCIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFR 832

Query: 812  SYKAEVDNKEMQVKRRSSDDMVN-FGK------IQSKIGRVDSLDDDGFPFIGANLQSGD 864
            +Y        M  +RR+   +V  F K      +  K+G  + LDDDG    G  +   D
Sbjct: 833  TY--------MDQERRNGISIVEEFEKPNRSNTLGFKVGTYEKLDDDGLVAPGVRVSGDD 884

Query: 865  IVIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLR 909
            I+IGK                  +  D S  L+  E G+V +V+L++N +G  F  V +R
Sbjct: 885  IIIGKTVPIPPDTEELGQRTKYHTKRDASTPLRSAESGIVDQVMLTTNAEGLKFVKVRMR 944

Query: 910  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEA 969
              + P +GDKF+S HGQKG +G     E+ PFT +GIVPDI+INPH  PSR T   L+E 
Sbjct: 945  TTKVPQIGDKFASRHGQKGTIGMTYRHEDMPFTAEGIVPDIIINPHCIPSRMTVAHLVEC 1004

Query: 970  ALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRS 1029
             L K +AAL      G +  ATPF   +VDA+++ L   G+   G E +Y+G TG+ + +
Sbjct: 1005 LLSK-VAAL-----RGYEGDATPFTDLTVDAVSKLLRENGYQSRGFEVMYNGHTGKKLMA 1058

Query: 1030 LIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA 1089
             I++GPT+YQRL HM +DK+  R  GP   LTRQP+  R R GG++FGEMERDC+IAHG 
Sbjct: 1059 QIYLGPTYYQRLRHMVDDKIHARARGPYQNLTRQPMEGRARDGGLRFGEMERDCMIAHGV 1118

Query: 1090 AANLHERLFTLSDSYQMHICRKC 1112
            A  L ERL   SD++++H+C  C
Sbjct: 1119 AGFLKERLMDSSDAFRVHVCGIC 1141


>gi|67515340|gb|AAY68199.1| RNA polymerase IV second largest subunit [Isoetes sp. JL-2005]
          Length = 623

 Score =  550 bits (1416), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 307/664 (46%), Positives = 401/664 (60%), Gaps = 66/664 (9%)

Query: 510  STPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKLADDASYSLGGKFKVFVDGD 568
            STPDGENCGLVK++ V  +V+    E PI + L    M     +A + LG   KVF++G 
Sbjct: 1    STPDGENCGLVKSMAVFAIVTLETPEQPILDALLGHMM---PPEAVFPLGELVKVFLNGK 57

Query: 569  WIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN--- 625
            W+G+          ++RKRR   L  Q    R +   E+ IF DAGR+LRPL +V+N   
Sbjct: 58   WVGITDAENDLEQYVKRKRRGGGLDYQAICLRGK---EINIFSDAGRLLRPLFIVDNDEL 114

Query: 626  ---------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKK 676
                     + + K  +G    F+ L+  G+IE VG EEE     A  I+ L      K+
Sbjct: 115  CITKEHLFELRRKKPQDG----FEYLVKEGVIEFVGAEEEYRASIAGSIQDL------KR 164

Query: 677  P----IKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRV 732
            P    +++TH EL  + LL +   +IPF NH+ + RV+ QS+KH  QAIGF  +N  +R 
Sbjct: 165  PRSHHVRYTHMELRPASLLAIGAFVIPFVNHNQSSRVMQQSRKHCRQAIGFNCSNLRVRC 224

Query: 733  DTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDS 792
            DT SH+L YPQRPL RT     +G           RPEL+NGQN IVAV    GYNQEDS
Sbjct: 225  DTTSHELLYPQRPLVRTQAMTLIG-----------RPELHNGQNPIVAVLSDTGYNQEDS 273

Query: 793  LVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDG 852
            +++N++SL+RGMFRS H  ++K  +     Q     S+  V   K QS     + LD DG
Sbjct: 274  IILNQSSLDRGMFRSMHFHTHKDALKPTLDQRFGEPSESDVGGYKKQS---HYEKLDSDG 330

Query: 853  FPFIGANLQSGDIVIGKYADSGAD-----HSIKLKHTERGMVQKVVLSSNDDGKNFSVVS 907
             P +GA L S D++IGK   +GAD      S KLKHTERG V +VV+++ +D +    V 
Sbjct: 331  LPHVGAALSSSDVIIGKLFTAGADVREVDASQKLKHTERGRVDQVVIAAKNDAETDVKVR 390

Query: 908  LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLL 967
            LR+ R+P +GDKFSSMHGQKGV+G    QE+ PFT  GIVPD++INPHAFP+RQT GQL+
Sbjct: 391  LRECRTPQVGDKFSSMHGQKGVVGMCFHQEDLPFTRDGIVPDLIINPHAFPTRQTLGQLM 450

Query: 968  EAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMV 1027
            E   GK  A       S  ++ ATPF   S+   +E+LH+AGF + G E +Y GR G  +
Sbjct: 451  ECLAGKAAAV------SAREQDATPFVERSLPRFSEELHKAGFQRTGMECMYSGRVGTRM 504

Query: 1028 RSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAH 1087
            +  + IG TFYQRL HM+EDK+K+R TG VHPLTRQP+ DRKR GGI+FGEMERDC+IAH
Sbjct: 505  KVRVNIGVTFYQRLTHMAEDKMKYRRTGSVHPLTRQPIVDRKRHGGIRFGEMERDCMIAH 564

Query: 1088 GAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKAN 1147
            GA+A L ERLF LSD Y M+IC KC+  A+V Q  V        P CR C  G +IV+ N
Sbjct: 565  GASATLQERLFLLSDPYVMYICTKCRRTASVEQNKV--------PRCRFCKCGSNIVRVN 616

Query: 1148 VPYG 1151
            VPY 
Sbjct: 617  VPYA 620


>gi|343477106|emb|CCD11984.1| unnamed protein product [Trypanosoma congolense IL3000]
          Length = 1186

 Score =  550 bits (1416), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 405/1203 (33%), Positives = 612/1203 (50%), Gaps = 128/1203 (10%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIV--EPGYDPSKKGEGEWRYASMRFG 89
            SFF E GLV  Q++SYN+F+   + +   S  E +   +  ++P  + E E     +   
Sbjct: 45   SFFREKGLVHQQVDSYNDFLLR-IPRMARSLLEIVPRQDDQFEPGVEMESEPDQYRLSLE 103

Query: 90   QVTLDKPSF-FAG-NGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
             V +  PS   +G +  + H +FP   RL+++TY +  +V +  +VY  +      ++T 
Sbjct: 104  DVVVGNPSHEISGFSRAEMHPLFPNECRLRDLTYDANAQVTLGIRVYRSRE--DQPYRT- 160

Query: 148  REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGA 201
               ++Q         N+ +GRIP+M+KS  C +   ++       +C  D GGYFI+ G 
Sbjct: 161  ---FLQ---------NMELGRIPIMLKSMRCNLLNKDEEELPRLNECPHDQGGYFIVNGT 208

Query: 202  EKVFVAQEQICLKRLWV-SNSMGWTVAYKS--ENKRN--RLIVRLVDMSKFEDIKGGEKV 256
            EKV +AQE+     ++  +   G     KS  E   N  R +  L+   K     G E +
Sbjct: 209  EKVLIAQERQAANHVYAFTRPKGLLCEIKSIVEGSLNKPRTLQILMPYKKSGPGHGYENL 268

Query: 257  LS-VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFR 315
            L  V  +   IP++ILF AL + SDKEI+  +    +D ++L +L  S+ DA +    F 
Sbjct: 269  LCRVAQMDELIPLFILFRALDMGSDKEILQTVVPDLKDAAMLEMLRGSMEDA-STLQVFT 327

Query: 316  KGRNALKYVDKLI--KGTTFPPGESTEECMNTYLFPSL----HGTKQKARFLGYMVKCLL 369
            +   AL ++ K +  + +        ++ +   L P +       + K  F+GYMV  LL
Sbjct: 328  RD-EALWFIGKRLGKQDSRDNLQREAQDLLMRDLLPHMGVDCAADRSKCLFIGYMVHRLL 386

Query: 370  QAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRT-VRPI 428
                GRR+  +RD   +KR+++AG LL  +L   +   R+ M + +  D   +R+ V   
Sbjct: 387  LLALGRREDTDRDFLGHKRIDVAGSLLTFQLNQFLVQVRREMTRTVH-DFSTNRSGVVSF 445

Query: 429  EYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQY 488
               L + ++T+G+ R  +TG +    K     +G+   L R     +L +LRR +  +  
Sbjct: 446  GRILHSRLITDGMRRCLATGNFGD-LKSGNIKTGVSQTLNRLTYSSSLSNLRRIQNPISA 504

Query: 489  TGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVS-----TSILEPIFEQLFN 543
            + K    R  H + WG IC + TP+G + GL+KNL +  LVS     T +++ +  +   
Sbjct: 505  SSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNLALMCLVSRGSDHTGVVQVVQSRTTG 564

Query: 544  SGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDEL 603
                 LAD A   +    +VFV+G  IGV  D    + ELR +RR  EL  +V + RD  
Sbjct: 565  FHSITLADLADVRVA---RVFVNGTLIGVHADPERLLRELRARRRGGELSNEVSVVRDIR 621

Query: 604  QSEVRIFMDAGRILRPLLVVENMGKIKSLEGK---------------NYTFQALLDHGII 648
              E+R+F D GR LRPL VVE   ++K  +GK                 ++  ++  G +
Sbjct: 622  DREIRVFSDGGRCLRPLFVVEK-SRVKLQKGKIGELLEPSAAPGGRREISWSRVMKKGYV 680

Query: 649  ELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARR 708
            ELV  EEE+    A G        E  K   ++HCE+D S +LG+   IIP+ NH+ + R
Sbjct: 681  ELVDCEEEDSLLIAMGPS------EVGKNYFYSHCEMDPSMILGICASIIPYPNHNQSPR 734

Query: 709  VLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPR 768
              YQS     QA+G   +N ++R+DT +H LFYPQ+PL RT          Y  ++ LP 
Sbjct: 735  NTYQSAM-GKQAMGVYASNFNMRMDTTAHVLFYPQKPLVRTKAM------SYMRSNDLP- 786

Query: 769  PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRS 828
                 G NAIVA+  + GYNQEDS++M+R+++ERG FRS   RSYKA       + K+R 
Sbjct: 787  ----AGHNAIVAIACYSGYNQEDSIIMSRSAVERGFFRSVFWRSYKAS------EEKKRE 836

Query: 829  SDDMVNF-GKIQSKIGRVD--SLDDDGFPFIGANLQSGDIVIGKY--------ADSGA-- 875
              +M     +    + R D   LD DG    G  +  GDI++GK          D+    
Sbjct: 837  GQEMFEIPDRKVCHVKRADYTKLDTDGLIKPGIPVIGGDIIVGKTIPIPESMREDTTLTN 896

Query: 876  ------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGV 929
                  D SI  +  E+G+V +V+L+ N  G  F+ V +R ++ P +GDKF S HGQKG 
Sbjct: 897  TRILKRDCSISSRTAEKGVVDRVMLTENK-GNRFTKVRIRTIKIPNIGDKFCSPHGQKGT 955

Query: 930  LGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRY 989
             G    QE+ PF   GI PD++INPHA PSR T   L+E   GK +A    G     + Y
Sbjct: 956  NGIQFRQEDLPFNNDGISPDLIINPHAIPSRMTVAHLIETLAGK-VACFKGG-----EVY 1009

Query: 990  ATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKV 1049
            ATPF +  V+   + L +   +++G ERLY+G TG  +  LIF GPT+YQRL H+S DK+
Sbjct: 1010 ATPFCSVVVEDFGKALTQLNLNRYGNERLYNGHTGLPLDHLIFFGPTYYQRLKHLSSDKI 1069

Query: 1050 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHIC 1109
              R  GP+ PL RQP   R   GG++FGEMERDC++++GA+  L ERLF +SD Y +H+C
Sbjct: 1070 HARPRGPLQPLVRQPTEGRAHEGGLRFGEMERDCMLSYGASQWLRERLFRVSDYYSVHVC 1129

Query: 1110 RKCKNV--ANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLK 1167
              C  +  A+  Q V           C+ CD+   I +  +PY  KLL QEL SM I  +
Sbjct: 1130 NVCGTICAADTDQNVYK---------CQGCDNDSHIAQVLMPYACKLLFQELMSMAILPR 1180

Query: 1168 FDT 1170
              T
Sbjct: 1181 LGT 1183


>gi|342180758|emb|CCC90234.1| unnamed protein product [Trypanosoma congolense IL3000]
 gi|343476499|emb|CCD12414.1| unnamed protein product [Trypanosoma congolense IL3000]
          Length = 1186

 Score =  549 bits (1415), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 405/1203 (33%), Positives = 612/1203 (50%), Gaps = 128/1203 (10%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIV--EPGYDPSKKGEGEWRYASMRFG 89
            SFF E GLV  Q++SYN+F+   + +   S  E +   +  ++P  + E E     +   
Sbjct: 45   SFFREKGLVHQQVDSYNDFLLR-IPRMARSLLEIVPRQDDQFEPGVEMESEPDQYRLSLE 103

Query: 90   QVTLDKPSF-FAG-NGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
             V +  PS   +G +  + H +FP   RL+++TY +  +V +  +VY  +      ++T 
Sbjct: 104  DVVVGNPSHEISGFSRAEMHPLFPNECRLRDLTYDANAQVTLGIRVYRSRE--DQPYRT- 160

Query: 148  REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGA 201
               ++Q         N+ +GRIP+M+KS  C +   ++       +C  D GGYFI+ G 
Sbjct: 161  ---FLQ---------NMELGRIPIMLKSMRCNLLNKDEEELPRLNECPHDQGGYFIVNGT 208

Query: 202  EKVFVAQEQICLKRLWV-SNSMGWTVAYKS--ENKRN--RLIVRLVDMSKFEDIKGGEKV 256
            EKV +AQE+     ++  +   G     KS  E   N  R +  L+   K     G E +
Sbjct: 209  EKVLIAQERQAANHVYAFTRPKGLLCEIKSIVEGSLNKPRTLQILMPYKKSGPGHGYENL 268

Query: 257  LS-VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFR 315
            L  V  +   IP++ILF AL + SDKEI+  +    +D ++L +L  S+ DA +    F 
Sbjct: 269  LCRVAQMDELIPLFILFRALDMGSDKEILQTVVPDLKDAAMLEMLRGSMEDA-STLQVFT 327

Query: 316  KGRNALKYVDKLI--KGTTFPPGESTEECMNTYLFPSL----HGTKQKARFLGYMVKCLL 369
            +   AL ++ K +  + +        ++ +   L P +       + K  F+GYMV  LL
Sbjct: 328  RD-EALWFIGKRLGKQDSRDNLQREAQDLLMRDLLPHMGVDCAADRSKCLFIGYMVHRLL 386

Query: 370  QAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRT-VRPI 428
                GRR+  +RD   +KR+++AG LL  +L   +   R+ M + +  D   +R+ V   
Sbjct: 387  LLALGRREDTDRDFLGHKRIDVAGSLLTFQLNQFLVQVRREMTRTVH-DFSTNRSGVVSF 445

Query: 429  EYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQY 488
               L + ++T+G+ R  +TG +    K     +G+   L R     +L +LRR +  +  
Sbjct: 446  GRILHSRLITDGMRRCLATGNFGD-LKSGNIKTGVSQTLNRLTYSSSLSNLRRIQNPISA 504

Query: 489  TGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVS-----TSILEPIFEQLFN 543
            + K    R  H + WG IC + TP+G + GL+KNL +  LVS     T +++ +  +   
Sbjct: 505  SSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNLALMCLVSRGSDHTGVVQVVQSRTTG 564

Query: 544  SGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDEL 603
                 LAD A   +    +VFV+G  IGV  D    + ELR +RR  EL  +V + RD  
Sbjct: 565  FHSITLADLADVRVA---RVFVNGTLIGVHADPERLLRELRARRRGGELSNEVSVVRDIR 621

Query: 604  QSEVRIFMDAGRILRPLLVVENMGKIKSLEGK---------------NYTFQALLDHGII 648
              E+R+F D GR LRPL VVE   ++K  +GK                 ++  ++  G +
Sbjct: 622  DREIRVFSDGGRCLRPLFVVEK-SRVKLQKGKIGELLEPSAAPGGRREISWSRVMKKGYV 680

Query: 649  ELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARR 708
            ELV  EEE+    A G        E  K   ++HCE+D S +LG+   IIP+ NH+ + R
Sbjct: 681  ELVDCEEEDSLLIAMGPS------EVGKNYFYSHCEMDPSMILGICASIIPYPNHNQSPR 734

Query: 709  VLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPR 768
              YQS     QA+G   +N ++R+DT +H LFYPQ+PL RT          Y  ++ LP 
Sbjct: 735  NTYQSAM-GKQAMGVYASNFNMRMDTTAHVLFYPQKPLVRTKAM------SYMRSNDLP- 786

Query: 769  PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRS 828
                 G NAIVA+  + GYNQEDS++M+R+++ERG FRS   RSYKA       + K+R 
Sbjct: 787  ----AGHNAIVAIACYSGYNQEDSIIMSRSAVERGFFRSVFWRSYKAS------EEKKRE 836

Query: 829  SDDMVNF-GKIQSKIGRVD--SLDDDGFPFIGANLQSGDIVIGKY--------ADSGA-- 875
              +M     +    + R D   LD DG    G  +  GDI++GK          D+    
Sbjct: 837  GQEMFEIPDRKVCHVKRADYTKLDTDGLIKPGMPVIGGDIIVGKTIPIPESMREDTTLTN 896

Query: 876  ------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGV 929
                  D SI  +  E+G+V +V+L+ N  G  F+ V +R ++ P +GDKF S HGQKG 
Sbjct: 897  TRILKRDCSISSRTAEKGVVDRVMLTENK-GNRFTKVRIRTIKIPNIGDKFCSRHGQKGT 955

Query: 930  LGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRY 989
             G    QE+ PF   GI PD++INPHA PSR T   L+E   GK +A    G     + Y
Sbjct: 956  NGIQFRQEDLPFNNDGISPDLIINPHAIPSRMTVAHLIETLAGK-VACFKGG-----EVY 1009

Query: 990  ATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKV 1049
            ATPF +  V+   + L +   +++G ERLY+G TG  +  LIF GPT+YQRL H+S DK+
Sbjct: 1010 ATPFCSVVVEDFGKALTQLNLNRYGNERLYNGHTGLPLDHLIFFGPTYYQRLKHLSSDKI 1069

Query: 1050 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHIC 1109
              R  GP+ PL RQP   R   GG++FGEMERDC++++GA+  L ERLF +SD Y +H+C
Sbjct: 1070 HARPRGPLQPLVRQPTEGRAHEGGLRFGEMERDCMLSYGASQWLRERLFRVSDYYSVHVC 1129

Query: 1110 RKCKNV--ANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLK 1167
              C  +  A+  Q V           C+ CD+   I +  +PY  KLL QEL SM I  +
Sbjct: 1130 NVCGTICAADTDQNVYK---------CQGCDNDSHIAQVLMPYACKLLFQELMSMAILPR 1180

Query: 1168 FDT 1170
              T
Sbjct: 1181 LGT 1183


>gi|307595330|ref|YP_003901647.1| DNA-directed RNA polymerase subunit B [Vulcanisaeta distributa DSM
            14429]
 gi|307550531|gb|ADN50596.1| DNA-directed RNA polymerase subunit B [Vulcanisaeta distributa DSM
            14429]
          Length = 1141

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 382/1199 (31%), Positives = 606/1199 (50%), Gaps = 169/1199 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F  E GLV HQI+S+N+F++  LQ+  +     I+E           E +   ++  ++
Sbjct: 43   AFIREGGLVRHQIDSFNDFVEKKLQEIVNE--NNIIE----------TEVKGLYIKLERI 90

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             + KP     +   EH ++P  ARL+N+TY++ + + +                     Y
Sbjct: 91   EVGKPRVREADAS-EHILYPMEARLRNLTYAAPLYLTMVL-------------------Y 130

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG-------DCDFDHGGYFIIKGAEKV 204
            +  E +  +   + IG +P+MV+S  C + G+++        D D D GGYFII G+E+V
Sbjct: 131  VNDEEVDRQ--KVYIGDLPIMVRSKFCNLYGLKRQELISKLEDPD-DPGGYFIINGSERV 187

Query: 205  FVAQEQICLKRLW---------------VSNSMGWTVAYKSENKRNRLIVRLVDMSKFED 249
             V+QE +   + +               +S   G+      E  R+ +I           
Sbjct: 188  IVSQEDLAPNKPFYDKGDKASITHVAKVISIGAGYKTTVTVERHRDGIIY---------- 237

Query: 250  IKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADN 309
                   ++   ++T IP  I+  ALG+ +D++IV  +    +D  I N L  S+  +  
Sbjct: 238  -------VTFPAIATRIPFPIIMRALGLETDEDIVLAV---SDDPDIQNELLPSLQFSVQ 287

Query: 310  KCDEFRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLHGTK----QKA 358
                     +AL ++     G+    G+  E       + ++ Y  P L  T+    +KA
Sbjct: 288  IASTVD---DALDFI-----GSKVAIGQPREVRIERAKQVLDRYFLPHLGTTEDARIKKA 339

Query: 359  RFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRD 418
              +G MVK +++ Y GRR+ D++D   NKR+ L G+L+ +  +       + + + L+R 
Sbjct: 340  LMVGQMVKGVIEMYLGRRQPDDKDHIANKRVRLVGDLMAQLFRAVFRQVLQDIRQQLERH 399

Query: 419  LYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVD 478
             Y    +  +   + A I+T  +  A +TG W     RT    G+   L R N + TL  
Sbjct: 400  -YSRGKIPSLVTLVRADIITERVRHAIATGNWIG--GRT----GVSQMLDRTNIMSTLSH 452

Query: 479  LRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIF 538
            LRR    +  T    +AR  HP+ WG++C + TP+G+NCGLVKNL +   ++  + E   
Sbjct: 453  LRRVVSNLSRTQPHFEARDLHPTQWGRLCAIETPEGQNCGLVKNLALLSTITVGVDENEV 512

Query: 539  EQL-FNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVE 597
            E+L ++ G+  +       + G  +V+++G  IGV  +    VS +R  RRR ++  ++ 
Sbjct: 513  EKLLYDLGVVPILRARKEGVKGT-EVYLNGRLIGVHTEPDKLVSTIREMRRRGQINHEIN 571

Query: 598  IKR--DELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGII 648
            + R  +E   EVR+  D GR+ RPL+++EN GK       ++ L    +T+  L+ +GII
Sbjct: 572  VARIRNEYLDEVRVNCDGGRLRRPLIIIEN-GKPKLRPEHVEKLRKGEWTWSDLISNGII 630

Query: 649  ELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARR 708
            E +  +EEE+   A      +   ED    K+TH E+  S ++G    IIP+A H+ + R
Sbjct: 631  EYLDGDEEENALVA------INPEEDMS--KYTHMEVIPSVMIGAVASIIPYAEHNQSPR 682

Query: 709  VLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPR 768
             +Y++   + Q++GFP  N   R+D+  H L YP+RPL  T         G   N  L R
Sbjct: 683  NIYEA-AMAKQSLGFPAANYRFRMDSRGHLLIYPERPLVITR--------GIELNGYLER 733

Query: 769  PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRS 828
            P    GQNA+VA+  + GYN ED++++N++++ERGM+RS   R+Y+ E    +M+     
Sbjct: 734  PA---GQNAVVALLTYTGYNMEDAVILNKSAIERGMYRSVFFRTYETE----QMRYPGGE 786

Query: 829  SDDM-VNFGKIQSKIG--RVDSLDDDGFPFIGANLQSGDIVIGK--------------YA 871
             D + +   +++   G      LD+DG       +  G+++IGK               +
Sbjct: 787  EDRIEIPSAEVRGYKGPEAYAHLDEDGIVSPEVFVSGGEVLIGKTSPPRFYGVYTETVVS 846

Query: 872  DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLG 931
             +  D SI ++  E+G+V  VV++  ++G     V +R++R P LGDKF+S HGQKGV+G
Sbjct: 847  SARRDSSITVRRGEKGIVDSVVVTETNEGYKLVKVKVRELRIPELGDKFASRHGQKGVMG 906

Query: 932  FLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYAT 991
             +   ++ PFT  GI PDI++NPHA PSR T GQLLE+  GK +AAL      G+   AT
Sbjct: 907  MMIPMQDMPFTEDGITPDIIVNPHALPSRMTVGQLLESMAGK-VAAL-----RGVMIDAT 960

Query: 992  PFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKF 1051
            PF   + + + + L R+GF   G E +Y G TG  + + IFIG  +YQ+L HM  DK+  
Sbjct: 961  PFEGVTEEELRDLLIRSGFRWDGKEVMYSGLTGRKLEADIFIGVVYYQKLHHMVADKIHA 1020

Query: 1052 RNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRK 1111
            R  GPV  LTRQP   R R GG++ GEMERD LIAHGAAA L ERL   SD Y M++C  
Sbjct: 1021 RARGPVQILTRQPTEGRSREGGLRLGEMERDVLIAHGAAALLRERLVESSDRYVMYVCED 1080

Query: 1112 CKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
            C  +A         G+    P C I      IV+  VPY  KLL QEL S+GI  + + 
Sbjct: 1081 CGMIAWYDS---NKGK----PVCPIHGDKGRIVRVVVPYAFKLLLQELMSLGIYPRIEA 1132


>gi|68300857|gb|AAY89365.1| RNA polymerase IV second largest subunit precursor [Chlamydomonas
            reinhardtii]
          Length = 1607

 Score =  547 bits (1409), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 369/1108 (33%), Positives = 564/1108 (50%), Gaps = 96/1108 (8%)

Query: 31   VSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP--GYDPSKKGEGEWRYASMRF 88
             +FF++ GLV  Q++S+NEF+   +Q+  D   E +++P   + P  +   E  Y  ++F
Sbjct: 22   TAFFDDKGLVRQQLDSFNEFVNVTIQEIIDETPEIVIKPESQHLPGVEAAEEKEYI-IKF 80

Query: 89   GQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGR 148
            GQV L +P     +G +   +FP+ ARL+N+TY + + V V    YT         + G 
Sbjct: 81   GQVYLSRPQITEQDG-ESVVLFPKEARLRNLTYCAPLYVDVTKTEYT---------RVGE 130

Query: 149  EQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM-------KGVEKGDCDFDHGGYFIIKGA 201
             +  +K  LS    ++ +G++P+M+KS+ C +       +    G+C +D GGYF+I G+
Sbjct: 131  NEVEEKTDLS----HVHLGKVPIMLKSERCNLHEASTEQEATNLGECPYDQGGYFVINGS 186

Query: 202  EKVFVAQEQICLKRLWV---SNSMGWT-------VAYKSENKRNRLIVRLVDMSKFEDIK 251
            EKV +AQE++    ++V   S    +T       V   S    + + + ++   K     
Sbjct: 187  EKVLIAQERMANNHVYVFKKSQPSKYTFCAEIRSVVEGSTRSASSMSIMMLAKGKKAGAA 246

Query: 252  GGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCE-DCSILNILFASIHDADNK 310
            G  +   + ++  E PI+ILF ALG  SD++I+  I +  + D ++L  L +S+ +A   
Sbjct: 247  GVIRA-QIPYIRAEFPIFILFRALGFVSDRDILEHIVYDLDADPAMLEALRSSVEEAQ-- 303

Query: 311  CDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTY---LFPSLHGTKQ-----KARFLG 362
              E +    AL Y+ K    T     +  +   N     L P L GT++     K  F+G
Sbjct: 304  --EVQTQEEALNYLGKRGTVTGASKADRIQYARNLLIKELLPHL-GTEEFMETRKGYFVG 360

Query: 363  YMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGD 422
            YMV  L+    GRR  D+RD + NKRL+L G L+    ++      K +    QR +   
Sbjct: 361  YMVHRLMLVALGRRPEDDRDHYANKRLDLGGPLMAGLFRLLFRKLCKELRMQAQRMVDAG 420

Query: 423  RTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
            + +  I    D  ++T GL  + +TG W    K+  R +G+   L R     TL  LRR 
Sbjct: 421  KEINVISAIND-KVITRGLKYSLATGNWGEQGKQGIR-AGVSQVLARLTYASTLSHLRRV 478

Query: 483  RQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQL 541
               +   GK+   R  H S WG  C   TP+G+  GLVKN+ +   ++      P+   L
Sbjct: 479  NSPIGREGKLAKPRQLHNSLWGIFCPAETPEGQAVGLVKNMALMCYITVGTPSLPVVAHL 538

Query: 542  FNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
                 E L +     +    KVF++G W+G+ +D  + +  LR  RR+    T+V I  D
Sbjct: 539  EEFNTEALDEVTPADIAASTKVFINGVWLGIQRDPTALIKNLRAMRRQVAFSTEVAIIYD 598

Query: 602  ELQSEVRIFMDAGRILRPLLVVEN------MGKIKSL-----EGKNYTFQALLDHGIIEL 650
                E+RIF D GR  RPL + E+         I+ L     +   Y +  L+  G++E 
Sbjct: 599  GPLKELRIFTDYGRASRPLYICEDNRLLVSKHHIRRLISPLPDEDEYAWPQLVQDGLVEY 658

Query: 651  VGTEEEEDCCTAWGIKYL--LKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARR 708
            +  EEEE    A  I  L   ++        +THCE+  + +LG+   IIPF +H+ + R
Sbjct: 659  IDAEEEETTMIAMTIADLRNAREAGAATGTTYTHCEIHPAMILGVCASIIPFPDHNQSPR 718

Query: 709  VLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPR 768
              YQS     QA+G   TN   R+DT    L+YPQ+PL  T   D          +++ R
Sbjct: 719  NTYQS-AMGKQAMGMYATNYQTRMDTQGFVLYYPQKPLVCTRAMD----------YLMFR 767

Query: 769  PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRS 828
             EL  G NAIVA+  + GYNQEDSL++N +S++RG  RS   R+YK E + K   + R  
Sbjct: 768  -ELPAGINAIVAIMCYSGYNQEDSLMLNGSSIDRGFHRSILYRAYKEE-EKKAGSMAREE 825

Query: 829  SDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD-----SGA-------D 876
             +        + K G  D LD DG    G  +   DI+ GK        +GA       D
Sbjct: 826  IEAPDPSVTSKMKHGTYDKLDADGLCPPGTRVSGEDIICGKTVTLPDDPTGAVQRFTKKD 885

Query: 877  HSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ 936
             S+ L+  E G++ +V+L++ND+G+ F  + +R +  P +GDKF+S HGQKG  G   + 
Sbjct: 886  ASLALRGHEAGVIDQVMLTTNDEGQKFVKIRVRTICIPQVGDKFASRHGQKGTCGITYTM 945

Query: 937  ENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP 996
            E+ PFT +GIVPDI++NPHA PSR T G L+EA + K  + +G       +  ATPF   
Sbjct: 946  EDMPFTAEGIVPDIIVNPHAIPSRMTIGHLVEALMSKVASLMGS------EGDATPFTKV 999

Query: 997  SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGP 1056
            +VD +++ LH  G+ + G E +Y G TG  +R+ IF+ PT+YQRL HM + K+  R  GP
Sbjct: 1000 TVDNVSQMLHDLGYQRRGWEVMYSGHTGRQLRAQIFLNPTYYQRLKHMVDFKIHSRGRGP 1059

Query: 1057 VHPLTRQPVADRKRFGGIKFGEMERDCL 1084
            V  LTRQP   R R GG++FGEMERDCL
Sbjct: 1060 VQVLTRQPAEGRARDGGLRFGEMERDCL 1087



 Score = 60.1 bits (144), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 7/90 (7%)

Query: 1082 DCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGD 1141
            +C+I+HGAAA L ERLF  SD+Y++H+C +   +A           K +     I   G 
Sbjct: 1516 NCIISHGAAAFLKERLFDQSDAYRIHVCERSGLIAV-------ANLKKQQFTSTIYKDGS 1568

Query: 1142 DIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
            +I +  +PY  KLL QEL +M I  +   E
Sbjct: 1569 NIYQVYIPYACKLLFQELMAMCIAPRMQFE 1598


>gi|159041032|ref|YP_001540284.1| DNA-directed RNA polymerase subunit B [Caldivirga maquilingensis
            IC-167]
 gi|157919867|gb|ABW01294.1| RNA polymerase Rpb2 domain 6 [Caldivirga maquilingensis IC-167]
          Length = 1131

 Score =  546 bits (1406), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 384/1189 (32%), Positives = 590/1189 (49%), Gaps = 154/1189 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            S+   YGLV HQI+S+N+F+   L++    F   +          G+ + ++  +  G+ 
Sbjct: 38   SYVRSYGLVRHQIDSFNDFVDRKLKEIVQEFNIDL----------GDVKVKFIDVEVGKP 87

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
               +P+      G E+ ++P  ARL+N+TY++ M++KV                     Y
Sbjct: 88   RFKEPT------GVENVIYPMEARLRNITYAAPMRLKVML-------------------Y 122

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
            I  E   + T  + +G +P+MVKS  C + G      V+K +   D GGYFII G+E+V 
Sbjct: 123  INGE---EYTETVPLGDLPIMVKSKYCNLYGLKPQAIVKKLEDPNDPGGYFIINGSERVV 179

Query: 206  VAQEQICL-KRLWVSNSMGWT------VAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLS 258
            V+QE + L K ++  +  G T      +       R  ++V        E  K G   + 
Sbjct: 180  VSQEDLALNKPIYDYDERGATRIPRAKIISMGPGYRTTVVV--------EYHKDGVIYVQ 231

Query: 259  VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGR 318
            +  + T +P  ++  ALG+  D++I   +    ++  I   L AS   A        + R
Sbjct: 232  IPKIPTRMPFPVVMRALGLEKDQDIALAV---SDNDEIQRELLASFEMAIQIAPTVDEAR 288

Query: 319  NALKYVDKLIKGTTFPPGE----STEECMNTYLFPSLHGTK------QKARFLGYMVKCL 368
            +   Y+ + I      P E       E ++ Y  P L  T        KA  LG  V  +
Sbjct: 289  D---YIGRRI--VLGHPREIRIQRALEYLDKYFLPHLGTTPDDKVRLSKAIELGQAVAGV 343

Query: 369  LQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPI 428
            ++ Y G R+ D++D   NKR+ L G+LL +  +   A   + +   L++  Y    +  +
Sbjct: 344  IELYKGWRQPDDKDHMSNKRVRLVGDLLAQLFRSIFAQFVQDLRNQLEKQ-YSRGKIPEL 402

Query: 429  EYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQY 488
               + A I+++ L  A STG W          +G+   L R N + T+  LRR    +  
Sbjct: 403  RTIVRADIISDRLKHALSTGNW------VGGKTGVTQMLDRTNYVSTISHLRRVVSSLSR 456

Query: 489  TGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFNS-GME 547
            T    +AR  HP+ WG++C + TP+G+NCGLVKN+ +   V+  + E   E +    G+ 
Sbjct: 457  TQPHFEARDLHPTQWGRLCAIETPEGQNCGLVKNMALMATVTVGVDEASVEAMLREMGVI 516

Query: 548  KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEV 607
             + D     + G   V ++G  IG+ +D  + V+ +R  RRR ++  +V +   E  +EV
Sbjct: 517  NVLDARRNEIKGA-NVLLNGRLIGIHRDPQALVNAIREARRRGDINGEVNVGYIEKLNEV 575

Query: 608  RIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGIIELVGTEEEEDCC 660
            R+  D GR+ RPLL++ N GK       I+ L    +T+  L+ +GI+E +  +EEE+  
Sbjct: 576  RVNCDGGRLRRPLLIISN-GKLRLTKEHIEKLRSGEWTWDDLVKNGIVEYLDADEEENAM 634

Query: 661  TAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQA 720
               G      D +D    K+TH E+  S +LG    IIP++ H+ + R +Y++   + Q+
Sbjct: 635  VTIG------DTKDVDLSKYTHMEIIPSIMLGAVAHIIPYSEHNQSPRNIYEA-AMAKQS 687

Query: 721  IGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVA 780
            +GFP +N   R+D+  H L YP+RPL  T   + +G   Y       RP   +GQNA++A
Sbjct: 688  LGFPYSNYRYRIDSRGHLLLYPERPLVTTRGLELIG---YSM-----RP---SGQNAVLA 736

Query: 781  VNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQS 840
            +   +GY+ ED++++N+A++ERGMFRS   RSY+ E     M       +D +       
Sbjct: 737  LVSFMGYSIEDAVMINKAAIERGMFRSIFYRSYETEAMRYPM-----GENDRITIPPPTV 791

Query: 841  KIGR----VDSLDDDGFPFIGANLQSGDIVIGK--------------YADSGADHSIKLK 882
            +  R       LD+DG       + S +++IGK               A    D+SI ++
Sbjct: 792  RDYRGAEAYAHLDEDGIVPPEVFVSSKEVLIGKISPPRFYSALAESQLAGEWKDNSITVR 851

Query: 883  HTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT 942
              E+G+V +V+++ + +G     V +R++R P LGDKF+S HGQKGV+G +   E+ PFT
Sbjct: 852  RGEKGIVDQVLITESSEGFKLIKVKVRELRIPELGDKFASRHGQKGVVGMIVPMEDMPFT 911

Query: 943  IQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAIT 1002
              GI PD+VINPHA PSR T GQLLEA  GK  A  G  +       ATPF       I 
Sbjct: 912  ENGITPDVVINPHALPSRMTIGQLLEAIAGKTAALYGTLVD------ATPFEGVPEGTIR 965

Query: 1003 EQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTR 1062
              L +AG+   G E +Y G  G  + + IFIG  +YQ+L HM  DK+  R TGP+  LTR
Sbjct: 966  SMLMKAGYRWSGRETMYSGLMGTRLDADIFIGVVYYQKLHHMVADKIHARATGPMQILTR 1025

Query: 1063 QPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVA---NVI 1119
            QP   R R GG++ GEMERD LIAHGAAA LHER+   SD Y M++C  C  +A   +  
Sbjct: 1026 QPTEGRSREGGLRLGEMERDVLIAHGAAALLHERMVESSDKYVMYVCEDCGMMAWWDDFK 1085

Query: 1120 QRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
            +R          P C I      I K  VPY  KLL QEL S+GI  K 
Sbjct: 1086 KR----------PICPIHGDKGRIAKVIVPYAFKLLLQELISLGIYPKL 1124


>gi|261327712|emb|CBH10689.1| DNA-directed RNA polymerase II subunit 2,putative [Trypanosoma brucei
            gambiense DAL972]
          Length = 1189

 Score =  543 bits (1399), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 401/1201 (33%), Positives = 604/1201 (50%), Gaps = 124/1201 (10%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIV--EPGYDPSKKGEGEWRYASMRFG 89
            SFF E GLV  Q++SYN+F+   + +   S  E +   +  +DP    E E     +   
Sbjct: 48   SFFREKGLVHQQVDSYNDFLLR-IPRMARSLLEIVPRQDDQFDPGVHVESEPDQYRLSLE 106

Query: 90   QVTLDKPSF-FAGNGGDE-HDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
             V +  PS   +G    E H +FP   RL+++TY +  +V +  +VY             
Sbjct: 107  DVVVGNPSHEMSGFSRTEMHPLFPNECRLRDLTYDAVAQVTLAIRVYR-----------S 155

Query: 148  REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGA 201
            RE+   +  L     N+ +GRIP+M+KS  C +   ++       +C  D GGYFI+ G 
Sbjct: 156  REEQPYRTFLQ----NMELGRIPIMLKSMRCNLLNKDEEELPRLNECPHDQGGYFIVNGT 211

Query: 202  EKVFVAQEQICLKRLWV-SNSMGWTVAYKS--ENKRN--RLIVRLVDMSKFEDIKGGEKV 256
            EKV +AQE+     ++  +   G     KS  E   N  R +  L+   K     G E +
Sbjct: 212  EKVLIAQERQAANHVYAFTRPKGLLCEIKSIVEGSLNKPRTLQILMPYKKSGPGHGYENL 271

Query: 257  LS-VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFR 315
            L  V  +   IP+++LF AL + SDKEI+  +    +D ++L +L  S+ DA     E  
Sbjct: 272  LCRVAQMDELIPLFVLFRALDMGSDKEILQTVVPDLKDVAMLEMLRGSMEDASTL--EIF 329

Query: 316  KGRNALKYVDKLI--KGTTFPPGESTEECMNTYLFPSL----HGTKQKARFLGYMVKCLL 369
                AL ++ K +  + +        ++ +   L P +       + K  F+GYMV  LL
Sbjct: 330  TRDEALWFIGKRLGKQDSRENLQREAQDLLMRDLLPHMGVDCAADRGKCLFIGYMVHRLL 389

Query: 370  QAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIE 429
                GRR+  +RD   +KR+++AG LL  +L   +   R+ MA+ +         V    
Sbjct: 390  LLALGRREDTDRDFLGHKRIDVAGSLLTFQLNQFLVQVRREMAQTVHDYSTNRGGVVSFG 449

Query: 430  YYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYT 489
              L   ++T+G+ R  +TG +    K     +G+   L R     +L +LRR +  +  +
Sbjct: 450  RILHNRLITDGMRRCLATGNFGD-LKSGNIKTGVSQTLNRLTYSSSLSNLRRIQNPISAS 508

Query: 490  GKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVS-----TSILEPIFEQLFNS 544
             K    R  H + WG IC + TP+G + GL+KNL +  LVS     T +++ +  ++   
Sbjct: 509  SKATRPRNLHCTQWGYICPVETPEGGSIGLLKNLALMCLVSRGSDHTGVVQAVQSRITGF 568

Query: 545  GMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQ 604
                L+D A   +    +VFV+G  IGV  D    + +LR +RR  EL  +V I RD   
Sbjct: 569  HSIALSDLADVRVA---RVFVNGTLIGVHGDPERLLRDLRARRRGGELSNEVSIVRDIRD 625

Query: 605  SEVRIFMDAGRILRPLLVVEN---------MGKI----KSLEGK-NYTFQALLDHGIIEL 650
             E+R+F D GR LRPL VVE          +G++     +L G+   ++  ++  G +EL
Sbjct: 626  REIRVFSDGGRCLRPLFVVEKSRIKLQKAGIGELLEPSTTLGGRREISWNKVMKKGYVEL 685

Query: 651  VGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVL 710
            +  EEE+    A      +   E  K   ++HCE+D S +LG+   IIP+ NH+ + R  
Sbjct: 686  IDCEEEDSLLIA------MVPSEVGKNYFYSHCEMDPSMILGICASIIPYPNHNQSPRNT 739

Query: 711  YQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPE 770
            YQS     QA+G   +N ++R+DT +H LFYPQ+PL RT          Y  ++ LP   
Sbjct: 740  YQSAM-GKQAMGIYASNFNMRMDTTAHVLFYPQKPLVRTKAM------SYMRSNDLP--- 789

Query: 771  LYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSD 830
               G NAIVA+  + GYNQEDS++M+R+++ERG FRS   RSYKA       + K+R   
Sbjct: 790  --AGHNAIVAIACYSGYNQEDSIIMSRSAVERGFFRSVFWRSYKAS------EEKKREGR 841

Query: 831  DMVNF-GKIQSKIGRVD--SLDDDGFPFIGANLQSGDIVIGK-------------YADS- 873
            +M     +    + R D   LD DG    G  +  GDI++GK              +D+ 
Sbjct: 842  EMFEIPDRKVCHVKRADYTKLDTDGLIKPGMPVIGGDIIVGKTIPVPKTLSEGSPVSDTR 901

Query: 874  --GADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLG 931
                D SI  +  E+G+V +V+L+ N  G  F+ V +R ++ P +GDKF S HGQKG  G
Sbjct: 902  ILKRDCSISSRAAEKGVVDRVMLTENK-GNRFTKVRIRTIKIPNIGDKFCSRHGQKGTNG 960

Query: 932  FLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYAT 991
                QE+ PF   GI PD++INPHA PSR T   L+E   GK     G  +      YAT
Sbjct: 961  IQFRQEDMPFNHDGISPDLIINPHAIPSRMTVAHLIETLAGKVACYKGGEV------YAT 1014

Query: 992  PFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKF 1051
            PF +  V+   + L +   +++G ERLY+G TG  +  LIF GPT+YQRL H+S DK+  
Sbjct: 1015 PFCSVVVEDFGKALTQLKLNRYGNERLYNGHTGLPLDHLIFFGPTYYQRLKHLSSDKIHA 1074

Query: 1052 RNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRK 1111
            R  GP+ PL RQP   R   GG++FGEMERDC++++GA+  L ERLF +SD Y +H+C  
Sbjct: 1075 RPRGPLQPLVRQPTEGRAHEGGLRFGEMERDCMLSYGASQWLRERLFRVSDYYSVHVCNM 1134

Query: 1112 CKNV--ANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFD 1169
            C  +  A+  Q +           C+ CD+   I +  +PY  KLL QEL SM I  +  
Sbjct: 1135 CGTICAADTDQNLYK---------CQGCDNDSHISQVLMPYACKLLFQELMSMAILPRLG 1185

Query: 1170 T 1170
            T
Sbjct: 1186 T 1186


>gi|72388214|ref|XP_844531.1| DNA-directed RNA polymerase II subunit 2 [Trypanosoma brucei TREU927]
 gi|62359772|gb|AAX80202.1| DNA-directed RNA polymerase II subunit 2, putative [Trypanosoma
            brucei]
 gi|70801064|gb|AAZ10972.1| DNA-directed RNA polymerase II subunit 2, putative [Trypanosoma
            brucei brucei strain 927/4 GUTat10.1]
          Length = 1190

 Score =  542 bits (1397), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 401/1201 (33%), Positives = 604/1201 (50%), Gaps = 124/1201 (10%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIV--EPGYDPSKKGEGEWRYASMRFG 89
            SFF E GLV  Q++SYN+F+   + +   S  E +   +  +DP    E E     +   
Sbjct: 49   SFFREKGLVHQQVDSYNDFLLR-IPRMARSLLEIVPRQDDQFDPGVHVESEPDQYRLSLE 107

Query: 90   QVTLDKPSF-FAGNGGDE-HDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
             V +  PS   +G    E H +FP   RL+++TY +  +V +  +VY             
Sbjct: 108  DVVVGNPSHEMSGFSRTEMHPLFPNECRLRDLTYDAVAQVTLAIRVYR-----------S 156

Query: 148  REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGA 201
            RE+   +  L     N+ +GRIP+M+KS  C +   ++       +C  D GGYFI+ G 
Sbjct: 157  REEQPYRTFLQ----NMELGRIPIMLKSMRCNLLNKDEEELPRLNECPHDQGGYFIVNGT 212

Query: 202  EKVFVAQEQICLKRLWV-SNSMGWTVAYKS--ENKRN--RLIVRLVDMSKFEDIKGGEKV 256
            EKV +AQE+     ++  +   G     KS  E   N  R +  L+   K     G E +
Sbjct: 213  EKVLIAQERQAANHVYAFTRPKGLLCEIKSIVEGSLNKPRTLQILMPYKKSGPGHGYENL 272

Query: 257  LS-VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFR 315
            L  V  +   IP+++LF AL + SDKEI+  +    +D ++L +L  S+ DA     E  
Sbjct: 273  LCRVAQMDELIPLFVLFRALDMGSDKEILQTVVPDLKDVAMLEMLRGSMEDASTL--EIF 330

Query: 316  KGRNALKYVDKLI--KGTTFPPGESTEECMNTYLFPSL----HGTKQKARFLGYMVKCLL 369
                AL ++ K +  + +        ++ +   L P +       + K  F+GYMV  LL
Sbjct: 331  TRDEALWFIGKRLGKQDSRENLQREAQDLLMRDLLPHMGVDCAADRGKCLFIGYMVHRLL 390

Query: 370  QAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIE 429
                GRR+  +RD   +KR+++AG LL  +L   +   R+ MA+ +         V    
Sbjct: 391  LLALGRREDTDRDFLGHKRIDVAGSLLTFQLNQFLVQVRREMAQTVHDYSTNRGGVVSFG 450

Query: 430  YYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYT 489
              L   ++T+G+ R  +TG +    K     +G+   L R     +L +LRR +  +  +
Sbjct: 451  RILHNRLITDGMRRCLATGNFGD-LKSGNIKTGVSQTLNRLTYSSSLSNLRRIQNPISAS 509

Query: 490  GKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVS-----TSILEPIFEQLFNS 544
             K    R  H + WG IC + TP+G + GL+KNL +  LVS     T +++ +  ++   
Sbjct: 510  SKATRPRNLHCTQWGYICPVETPEGGSIGLLKNLALMCLVSRGSDHTGVVQAVQSRITGF 569

Query: 545  GMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQ 604
                L+D A   +    +VFV+G  IGV  D    + +LR +RR  EL  +V I RD   
Sbjct: 570  HSIALSDLADVRVA---RVFVNGTLIGVHGDPERLLRDLRARRRGGELSNEVSIVRDIRD 626

Query: 605  SEVRIFMDAGRILRPLLVVEN---------MGKI----KSLEGK-NYTFQALLDHGIIEL 650
             E+R+F D GR LRPL VVE          +G++     +L G+   ++  ++  G +EL
Sbjct: 627  REIRVFSDGGRCLRPLFVVEKSRIKLQKAGIGELLEPSTTLGGRREISWNKVMKKGYVEL 686

Query: 651  VGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVL 710
            +  EEE+    A      +   E  K   ++HCE+D S +LG+   IIP+ NH+ + R  
Sbjct: 687  IDCEEEDSLLIA------MVPSEVGKNYFYSHCEMDPSMILGICASIIPYPNHNQSPRNT 740

Query: 711  YQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPE 770
            YQS     QA+G   +N ++R+DT +H LFYPQ+PL RT          Y  ++ LP   
Sbjct: 741  YQSAM-GKQAMGIYASNFNMRMDTTAHVLFYPQKPLVRTKAM------SYMRSNDLP--- 790

Query: 771  LYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSD 830
               G NAIVA+  + GYNQEDS++M+R+++ERG FRS   RSYKA       + K+R   
Sbjct: 791  --AGHNAIVAIACYSGYNQEDSIIMSRSAVERGFFRSVFWRSYKAS------EEKKREGR 842

Query: 831  DMVNF-GKIQSKIGRVD--SLDDDGFPFIGANLQSGDIVIGK-------------YADS- 873
            +M     +    + R D   LD DG    G  +  GDI++GK              +D+ 
Sbjct: 843  EMFEIPDRKVCHVKRADYTKLDTDGLIKPGMPVIGGDIIVGKTIPVPKTLSEESPVSDTR 902

Query: 874  --GADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLG 931
                D SI  +  E+G+V +V+L+ N  G  F+ V +R ++ P +GDKF S HGQKG  G
Sbjct: 903  ILKRDCSISSRAAEKGVVDRVMLTENK-GNRFTKVRIRTIKIPNIGDKFCSRHGQKGTNG 961

Query: 932  FLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYAT 991
                QE+ PF   GI PD++INPHA PSR T   L+E   GK     G  +      YAT
Sbjct: 962  IQFRQEDMPFNHDGISPDLIINPHAIPSRMTVAHLIETLAGKVACYKGGEV------YAT 1015

Query: 992  PFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKF 1051
            PF +  V+   + L +   +++G ERLY+G TG  +  LIF GPT+YQRL H+S DK+  
Sbjct: 1016 PFCSVVVEDFGKALTQLKLNRYGNERLYNGHTGLPLDHLIFFGPTYYQRLKHLSSDKIHA 1075

Query: 1052 RNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRK 1111
            R  GP+ PL RQP   R   GG++FGEMERDC++++GA+  L ERLF +SD Y +H+C  
Sbjct: 1076 RPRGPLQPLVRQPTEGRAHEGGLRFGEMERDCMLSYGASQWLRERLFRVSDYYSVHVCNM 1135

Query: 1112 CKNV--ANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFD 1169
            C  +  A+  Q +           C+ CD+   I +  +PY  KLL QEL SM I  +  
Sbjct: 1136 CGTICAADTDQNLYK---------CQGCDNDSHISQVLMPYACKLLFQELMSMAILPRLG 1186

Query: 1170 T 1170
            T
Sbjct: 1187 T 1187


>gi|67904266|ref|XP_682389.1| hypothetical protein AN9120.2 [Aspergillus nidulans FGSC A4]
 gi|40742763|gb|EAA61953.1| hypothetical protein AN9120.2 [Aspergillus nidulans FGSC A4]
          Length = 1028

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 348/986 (35%), Positives = 506/986 (51%), Gaps = 103/986 (10%)

Query: 258  SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG 317
            ++ ++  +IPI I+F ALGV SD++I+N I +   D  +L +L   I +     D     
Sbjct: 65   TLPYIKADIPIVIVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDR---- 120

Query: 318  RNALKYVDKLIKGTTFPPGES----TEECMNTYLFPSLHGTK----QKARFLGYMVKCLL 369
              AL ++ K     +    E       E M   L P +  ++    +KA FLGYMV  LL
Sbjct: 121  EVALDFIAKRGSSQSSMNHERRVRYAREIMQKELLPHISQSEGSETRKAFFLGYMVHRLL 180

Query: 370  QAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIE 429
            Q   GRR  D+RD F  KRL+LAG LL    +V      + + + +QR +  DR +  + 
Sbjct: 181  QCALGRRDVDDRDHFGKKRLDLAGPLLANLFRVLFTRVTRDLQRYVQRCVESDREIY-LN 239

Query: 430  YYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYT 489
              L AS +T GL  A +TG W    K     +G+   L R     TL  LRRT   +   
Sbjct: 240  VGLKASTVTQGLRYALATGNWGEQKKAASAKAGVSQVLSRYTYASTLSHLRRTNTPIGRD 299

Query: 490  GKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEK 548
            GK+   R  H +HWG +C   TP+G+ CGLVKNL +   ++  +  EPI + +    ME 
Sbjct: 300  GKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEV 359

Query: 549  LADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVR 608
            L +          KVFV+G W+GV +     V  ++  RRR  +  +V + RD  + E +
Sbjct: 360  LEEFEPQVTPNATKVFVNGVWVGVHRQPSHLVETMQALRRRNMISHEVSLIRDIREREFK 419

Query: 609  IFMDAGRILRPLLVVENMGK-------------IKSLEG---------------KNYTFQ 640
            IF DAGR+ RPL VV+N  K             I+ LE                + + + 
Sbjct: 420  IFTDAGRVCRPLFVVDNDPKSENCGNLVLNKEHIRKLEEDKELPPDMDPEDRRERYFGWD 479

Query: 641  ALLDHGIIELVGTEEEEDCCTAWGIKYL---------------------LKDIEDKKPIK 679
             L+  G++E V  EEEE        + L                     ++ I  ++   
Sbjct: 480  GLVKSGVVEYVDAEEEETIMIVMTPEDLEISKQLQAGYALPEEQDPNKRVRSILSQRAHT 539

Query: 680  FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQL 739
            +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN   R++T+++ L
Sbjct: 540  WTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVFLTNFDQRMETMANIL 598

Query: 740  FYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRAS 799
            +YPQ+PL  T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++S
Sbjct: 599  YYPQKPLATTRSME-----------FLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSS 647

Query: 800  LERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGAN 859
            ++RG+FRS   R+Y        + V  R    M +   I  + G  D LD+DG    G  
Sbjct: 648  IDRGLFRSLFYRTYSDSEKMVGLTVVERFEKPMRS-DTIGMRKGTYDKLDEDGIVNPGVR 706

Query: 860  LQSGDIVIGKYADSGADH---------------SIKLKHTERGMVQKVVLSSNDDGKNFS 904
            +   DI+IGK A    D                S  L+ TE G+V +V++++  D     
Sbjct: 707  VSGEDIIIGKTAPLAPDAEELGQRTKNHTKLDVSTPLRSTENGIVDQVLVTTTPDSLRSV 766

Query: 905  VVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPG 964
             V +R  + P +GDKF+S HGQKG +G    QE+ PFT +G+ PD++INPHA PSR T  
Sbjct: 767  KVRMRMTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVTPDLIINPHAIPSRMTIA 826

Query: 965  QLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTG 1024
             L+E  L K ++AL      G +  ATPF   +VD+I+  L   G+   G E +Y+G TG
Sbjct: 827  HLIECQLSK-VSAL-----RGFEGDATPFTDVTVDSISRLLREHGYQSRGFEVMYNGHTG 880

Query: 1025 EMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL 1084
              + + +F+GPT+YQRL HM +DK+  R  GP   LTRQPV  R R GG++FGEMERDC+
Sbjct: 881  RKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCM 940

Query: 1085 IAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIV 1144
            IAHGA+A L ERLF +SD +++HIC  C  +   I ++  G  +     CR+C++   I 
Sbjct: 941  IAHGASAFLKERLFDVSDPFRVHICDDC-GLMTPIAKLKKGLFE-----CRLCNNKHRIS 994

Query: 1145 KANVPYGAKLLCQELFSMGITLKFDT 1170
            + ++PY AKLL QEL +M I+ +  T
Sbjct: 995  QVHIPYAAKLLFQELAAMNISARMFT 1020


>gi|340053396|emb|CCC47686.1| putative DNA-directed RNA polymerase II subunit 2 [Trypanosoma vivax
            Y486]
          Length = 1186

 Score =  539 bits (1389), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 400/1198 (33%), Positives = 600/1198 (50%), Gaps = 118/1198 (9%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIV--EPGYDPSKKGEGEWRYASMRFG 89
            SFF E GLV  QI+SYN+F+   + +   S  E +   +  ++P  + + E     +   
Sbjct: 45   SFFREKGLVHQQIDSYNDFLLR-IPRMARSLLEVVPRQDSQFEPGMQLDVEPDQYRLSLE 103

Query: 90   QVTLDKPSF-FAGNGGDE-HDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
             V +  PS   +G    E H +FP   RL++MTY +  +V +  +VY             
Sbjct: 104  DVVVGNPSHETSGFSRQEMHPLFPNECRLRDMTYDANAQVTLGIRVYR-----------S 152

Query: 148  REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGA 201
            RE+   +  L     N+ +GRIP+M+KS  C +   ++       +C  D GGYFII G 
Sbjct: 153  REEQPYRTFLQ----NMELGRIPIMLKSIRCNLLYKDEDELPRLNECPHDQGGYFIINGT 208

Query: 202  EKVFVAQEQICLKRLWV-SNSMGWTVAYKS--ENKRN--RLIVRLVDMSKFEDIKGGEKV 256
            EKV VAQE+     ++  +   G     KS  E   N  R    ++   K     G E +
Sbjct: 209  EKVLVAQERQAANHVYAFTRPKGLLCEIKSIVEGSLNKPRTFQIIMPYKKTGPGHGYENL 268

Query: 257  LS-VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFR 315
            L  V  +   IP+++LF AL + SD+EI+  +    +D ++L +L  S+ DA     +  
Sbjct: 269  LCRVAQMDELIPLFVLFRALDMGSDREILQTVVPDLKDAAMLEMLRGSMEDASTL--QIF 326

Query: 316  KGRNALKYVDKLI--KGTTFPPGESTEECMNTYLFPSL----HGTKQKARFLGYMVKCLL 369
                AL ++ K +  + +        +  +   L P +       + K  F+GYMV  LL
Sbjct: 327  TRDEALWFIGKRLGRQDSRENLQREAQGLLMRDLLPHMGVDCTADRGKCLFIGYMVHRLL 386

Query: 370  QAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIE 429
                GRR+  +RD   +KR+++AG LL  +L   +   RK M+K +         V    
Sbjct: 387  LLALGRREDTDRDFLGHKRIDVAGALLTFQLNHFLVQVRKEMSKTVHDYSTSRGGVVSFA 446

Query: 430  YYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYT 489
              L + ++T+G+ R  +TG +    K     +G+   L R     +L +LRR +  +  +
Sbjct: 447  KILHSRLITDGMRRCLATGNFGD-LKSGNIKTGVSQTLNRLTYSSSLSNLRRIQNPISAS 505

Query: 490  GKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVS-----TSILEPIFEQLFNS 544
             K    R  H + WG IC + TP+G + GL+KNL +  L+S     TS+ + +  ++   
Sbjct: 506  SKATRPRNLHCTQWGYICPVETPEGGSIGLLKNLALMCLISRGSDHTSVAQTVQARITGF 565

Query: 545  GMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQ 604
                L+D A   L    +VFV+G  IGV +D    + ELR +RR  EL  +V I RD   
Sbjct: 566  HSVGLSDLADVRLA---RVFVNGTLIGVHRDPERLLRELRARRRGGELSNEVSIVRDIRD 622

Query: 605  SEVRIFMDAGRILRPLLVVEN---------MGKI----KSLEG-KNYTFQALLDHGIIEL 650
             E+R+F DAGR +RPL VVE          MG++    ++  G +  ++  ++  G +EL
Sbjct: 623  REIRVFSDAGRCIRPLFVVEKSSLKLRKAGMGELLEPSRAPGGQRQISWNRVMKRGYVEL 682

Query: 651  VGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVL 710
            +  EEE+    A      +   E  K   ++HCE+D S +LG+   IIP+ NH+ + R  
Sbjct: 683  IDCEEEDSLLIA------MAPSEVGKNYFYSHCEMDPSMILGICASIIPYPNHNQSPRNT 736

Query: 711  YQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPE 770
            YQS     QA+G   +N ++R+DT +H LFYPQ+PL RT          Y  ++ LP   
Sbjct: 737  YQSAM-GKQAMGIYASNFNMRMDTTAHILFYPQKPLVRTKAM------SYMRSNDLP--- 786

Query: 771  LYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSD 830
               G NA+VA+  + GYNQEDS++M+R+++ERG FRS   RSYKA  +NK+   + +   
Sbjct: 787  --AGHNAVVAIACYSGYNQEDSIIMSRSAVERGFFRSVFWRSYKASEENKK---EGKEVF 841

Query: 831  DMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD----------------SG 874
            ++ +      K      LD DG    G  +  GDI++GK                     
Sbjct: 842  EVPDRKICHVKRADYSKLDTDGLIKPGMPVMGGDILVGKTVPIPESMRENATTANTRIMK 901

Query: 875  ADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLE 934
             D SI  +  E+G+V KV+L+ N  G  F+ V +R ++ P +GDKF S HGQKG  G   
Sbjct: 902  RDCSISSRTAEKGVVDKVMLTENK-GNRFTKVKVRTIKIPNIGDKFCSRHGQKGTNGIQF 960

Query: 935  SQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFA 994
             QE+ PF   GI PD++INPHA PSR T   L+E   GK     G  +      YATPF 
Sbjct: 961  RQEDMPFNSDGISPDLIINPHAIPSRMTVAHLIETLAGKVACYKGGEV------YATPFC 1014

Query: 995  TPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNT 1054
            +  V+   + L +    ++G E LY+G TG  +  LIF GPT+YQRL H+S DK+  R  
Sbjct: 1015 SVVVEDFGKALQQLKCHRYGNECLYNGHTGLPLEHLIFFGPTYYQRLKHLSGDKIHARPR 1074

Query: 1055 GPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKN 1114
            GP+ PL RQP   R   GG++FGEMERDC++++GA+  L ERLF +SD Y +H+C  C  
Sbjct: 1075 GPLQPLVRQPTEGRAHEGGLRFGEMERDCMLSYGASQWLRERLFRVSDYYAVHVCNMCGT 1134

Query: 1115 V--ANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
            +  A+  Q V           C+ CD+   I    +PY  KLL QEL SM I  +  T
Sbjct: 1135 ICAADTEQNVYN---------CQGCDNDARISHVLMPYACKLLFQELMSMAILPRLGT 1183


>gi|320166143|gb|EFW43042.1| DNA-directed RNA polymerase II subunit RPB2 [Capsaspora owczarzaki
            ATCC 30864]
          Length = 1729

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 372/1127 (33%), Positives = 581/1127 (51%), Gaps = 111/1127 (9%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFG--ETIVEPGYDPSKKGEGEWRYASMRFG 89
            SFF   GLV  Q++S+++FI   + +     G  E  VE  +  + +     RY  + F 
Sbjct: 44   SFFKNKGLVRQQLDSFDDFISLTIPELISEQGTLELKVERQFLDADE-VAPPRYV-VSFD 101

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
             + +  P+    +G + H +FP  ARL+N+TY+ R+ V ++ +++          + G E
Sbjct: 102  NIFISHPTITESDGYN-HALFPNEARLRNLTYACRLYVNLKREMFRYD-------ENGVE 153

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG-----VEK-GDCDFDHGGYFIIKGAEK 203
            +  + ++L      + +G+IP+M++S  C +       +EK  +C +D GGYF+I G+EK
Sbjct: 154  EPPEVKILD----KVYLGQIPMMLRSKNCALFNKKDYELEKMNECPYDQGGYFVINGSEK 209

Query: 204  VFVAQEQICLKRLWV-----SNSMGWTVAYKS-----ENKRNRLIVRLVDMSKFEDIKGG 253
            V +AQE++    ++V          +    +S         N L  +++   + +    G
Sbjct: 210  VLIAQERMANNNVYVFHRKPPAKYSYVAEIRSALETGHRPANTLYTKMLTRGQSKGESAG 269

Query: 254  EKV-LSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD 312
             ++  ++ ++ T+IPI ++F ALG  SD+++++ + +  +D  ++ +L  S+ +A     
Sbjct: 270  NRIQCTLPYIKTDIPIVVVFRALGFVSDRDVLDHVIYDYQDQEMMEMLRFSLEEAL---- 325

Query: 313  EFRKGRNALKYVDK--LIKGTTFPPG-ESTEECMNTYLFPSL----HGTKQKARFLGYMV 365
              ++   AL ++ K  L++G T        +E +   L P +    H   +KA F GY+V
Sbjct: 326  PIQEQPVALDFIGKRGLVQGATRENRIRYAKEILQKELLPHVGVTDHSETKKAYFFGYIV 385

Query: 366  KCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTV 425
              LLQA  GRR+ D+RD + NKR +LAG L+    ++      K +  +LQ+D+      
Sbjct: 386  HRLLQAALGRRELDDRDHYGNKRCDLAGALVGGLFRLLFRKLIKDVKASLQKDVDKRHEF 445

Query: 426  RPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQ 485
              +  +  A I+++GL  + +TG W    K  E  +G+   L R     TL  LRR    
Sbjct: 446  NLLAAF-KAKIISDGLRYSLATGNWGDAKKAHESRAGVSQVLNRLTYASTLSHLRRLNSP 504

Query: 486  VQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNS 544
            +   GK+   R    + WG +C   TP+G+ CGLVKNL +   +S  S    I E L   
Sbjct: 505  IGREGKLAKPRQLQNTQWGVMCPAETPEGQACGLVKNLALMAYISVGSPALHIIEFLEEW 564

Query: 545  GMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQ 604
              E L +    S+    K+FV+G W+G+   +   V  L + R+R ++  ++ I  D  +
Sbjct: 565  ATENLEETTPQSILQSTKIFVNGCWVGIHAQANELVRTLAQLRQRTDISPEISIVPDIRE 624

Query: 605  SEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQA------------LLDHG 646
             E+RI+ DAGR +RPL VVE+         I +L+      +A            L+  G
Sbjct: 625  RELRIYSDAGRAMRPLFVVEDERLSIRREHIDALKQAAQADRAGEHIDNPMRWPELITTG 684

Query: 647  IIELVGTEEEEDCCTAW---GIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANH 703
            +IE + T+EEE    A     + Y  ++         THCE++ + +LG+   IIPF +H
Sbjct: 685  VIEYIDTQEEETRMIAMHPEDLDYARREGRGAYCSTHTHCEINPAMILGVCASIIPFPDH 744

Query: 704  DHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHN 763
            + + R  YQS     QA+G   +N  +R+DT+SH L+YPQ+PL  T   +      Y H 
Sbjct: 745  NQSPRNCYQSAM-GKQAMGVYISNFQVRLDTMSHTLYYPQKPLTTTRSME------YLHF 797

Query: 764  HILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQ 823
              LP      G NAIVA++V+ GYNQEDS+VMN+++++RG+FRS   RSYK EV    + 
Sbjct: 798  DSLP-----AGMNAIVAISVYSGYNQEDSVVMNQSAIDRGLFRSLFYRSYKDEVKPAGLD 852

Query: 824  VK----RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD------- 872
            V      + S ++V   +  S     D LD DG    G  +   D +IGK          
Sbjct: 853  VGDEEFEKPSLEIVAGMRHSS----YDKLDADGLVAPGTRVSGDDFIIGKTTPIPDEKNE 908

Query: 873  --------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMH 924
                       D S  L+ TE G+V  V+LS N+DG  F  V +R +R P +GDKF+S H
Sbjct: 909  LAQTMKRYRKRDASTALRSTENGIVDTVMLSVNEDGHRFVKVRVRGIRIPQIGDKFASRH 968

Query: 925  GQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICS 984
            GQKG  G    QE+ P+  +GI PDI+INPHA PSR T G L+E   GK +AAL   I  
Sbjct: 969  GQKGTCGITYRQEDMPYNAEGITPDIIINPHAIPSRMTIGHLIECLQGK-VAALTGKIGD 1027

Query: 985  GLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIH 1043
                 ATPF T  +V +I + L    +  +G E L++G TG+ + + ++ GPT+YQRL H
Sbjct: 1028 -----ATPFNTDVTVKSIADLLKEFRYHPYGNEVLFNGHTGKKMNTQVYFGPTYYQRLKH 1082

Query: 1044 MSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAA 1090
            M +DK+  R  GP+  LTRQPV  R R GG++FGEMERDCL  HG A
Sbjct: 1083 MVDDKIHSRQRGPLTNLTRQPVEGRARDGGLRFGEMERDCL--HGDA 1127



 Score = 61.2 bits (147), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 47/95 (49%), Gaps = 7/95 (7%)

Query: 1074 IKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPY 1133
            I  G    +C+IAHGAA  L ERLF  SD  ++H+C  C  +A           K     
Sbjct: 1631 IANGVAVHNCMIAHGAAQFLRERLFEQSDFSRVHVCDICGLIAI-------ANLKKNEFE 1683

Query: 1134 CRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
            CR C +   I +  +PY AKLL QEL SM I  + 
Sbjct: 1684 CRACRNKTQISQIFLPYAAKLLFQELMSMSIAPRL 1718


>gi|260826766|ref|XP_002608336.1| hypothetical protein BRAFLDRAFT_126222 [Branchiostoma floridae]
 gi|229293687|gb|EEN64346.1| hypothetical protein BRAFLDRAFT_126222 [Branchiostoma floridae]
          Length = 1104

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 382/1150 (33%), Positives = 575/1150 (50%), Gaps = 158/1150 (13%)

Query: 16   DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPS 74
            ++  +  +  C     S+F+E GLV  Q++S++EFI+  +Q+   DS    +       +
Sbjct: 18   EITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHLT 77

Query: 75   KKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVY 134
             + E   RY  + F Q+ L KP+ +  +G     M P  ARL+N+TYS+ + V +     
Sbjct: 78   MEAEVPPRYL-LNFEQIYLSKPTHWEKDGAPS-PMMPNEARLRNLTYSAPLYVDI----- 130

Query: 135  TQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDC 188
                 T    K G E+      +  +     IG+IP+M++S  C + G+      E  +C
Sbjct: 131  -----TKTIVKDGEER------IETQHQKTFIGKIPIMLRSTYCLLSGLTDRDLTELNEC 179

Query: 189  DFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR---------NRLIV 239
              D GGYFII G+EKV +AQE++    ++V        A+  E +          + L V
Sbjct: 180  PLDPGGYFIINGSEKVLIAQEKMATNSVYVFAKKDSKYAFTGEIRSCLEHSSRPTSTLWV 239

Query: 240  RLVDMSKFEDIKG--GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
             ++        K   G+++++V  ++  EIPI I+F ALG  SD++I+  I +  +D  +
Sbjct: 240  HMLARGGTGQRKSAIGQRIVAVLPYIRQEIPIIIVFRALGFVSDRDILEHIIYDFDDPEM 299

Query: 297  LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
            + +L  S+ +A      N    F   R A         +KY  ++++    P    ++ C
Sbjct: 300  MEMLKPSLDEAFVIQEQNVALNFIGARGAKPGVTKDKRIKYAREILQKEMLPHVGISDYC 359

Query: 343  MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                         +KA FLGY+V  LL A  GRR+ D+RD + NKRL+LAG LL      
Sbjct: 360  -----------ETKKAYFLGYIVHRLLLAALGRRELDDRDHYGNKRLDLAGPLL------ 402

Query: 403  HIAHARKRMAKALQRD--LYGDRTVR-----PIEYYLDASILTNGLSRAFSTGAWSHPFK 455
              A+  + + K L ++  +Y  + +       +E  +   I+T+GL  + +TG W    K
Sbjct: 403  --AYLFRGLFKNLTKEVRIYAQKFIDRGKDFNLELAIKTRIITDGLKYSLATGNWGDQKK 460

Query: 456  RTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGE 515
              +  +G+   L R     TL  LRR    +   GK+   R  H S WG IC   TP+G+
Sbjct: 461  AHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNSLWGMICPAETPEGQ 520

Query: 516  NCGLVKNLGV-------------TGLVSTSIL----------EPIFEQLFNSGMEKLADD 552
              GLVKNL +              GLV    L           PI E L    ME L + 
Sbjct: 521  AVGLVKNLALMAYISMVHDNGQAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEV 580

Query: 553  ASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFM 611
            A  ++    K+FV+G W+GV +D    ++ L++ RR+ ++  ++V + RD  + E+RIF 
Sbjct: 581  APSAIANATKIFVNGCWVGVHRDPEQLMNTLKKLRRQMDIIVSEVSMVRDIREREIRIFT 640

Query: 612  DAGRILRPLLVVE---------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTA 662
            DAGRI RPLL+VE         ++  +K  E  NY++Q L+  G++E + T EEE    A
Sbjct: 641  DAGRICRPLLIVEKQKLLLKKHHVDMLKEREYNNYSWQDLVAGGVVEYIDTLEEETVMLA 700

Query: 663  WGIKYLLKDIEDKKPI---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQ 719
                    D++DK       +THCE+  S +LG+   IIPF +H+ + R  YQS     Q
Sbjct: 701  MTPD----DLQDKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQ 755

Query: 720  AIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIV 779
            A+G   TN  +R+DTL+H L+YPQ+PL  T   + L              EL  G NAIV
Sbjct: 756  AMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLR-----------FRELPAGINAIV 804

Query: 780  AVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEM---QVKRRSSDDMVNFG 836
            A+  + GYNQEDS++MN ++++RG+FRS   RSYK     K +   ++  + + D V   
Sbjct: 805  AIASYTGYNQEDSVIMNASAIDRGLFRSVFYRSYKESESKKGLDQEEIFEKPTRDEVT-- 862

Query: 837  KIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD---------------SGADHSIKL 881
             +++ I   D LDDDG    G  +   D++IGK                  +  D S  L
Sbjct: 863  GMRNAI--YDKLDDDGIIAPGVRVSGEDVIIGKTVTLPENEDELESTTKRFTKRDSSTFL 920

Query: 882  KHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPF 941
            + +E G+V +V++S N +G  F  V +R VR P +GDKF+S HGQKG  G    QE+ PF
Sbjct: 921  RSSETGIVDQVMVSINQEGYKFCKVRVRSVRIPQIGDKFASRHGQKGTCGITYRQEDMPF 980

Query: 942  TIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDA 1000
            T +GI PDI+INPHA PSR T G L+E   GK   +  KG        ATPF    +V  
Sbjct: 981  TAEGISPDIIINPHAVPSRMTIGHLIECLQGK--VSANKGEIGD----ATPFNDAVNVQK 1034

Query: 1001 ITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPL 1060
            I+  LH  G+   G E +Y+G TG  + + +FIGPT+YQRL HM +DK+  R  GPV  L
Sbjct: 1035 ISNLLHEYGYHLRGNEVVYNGFTGRKLSTQLFIGPTYYQRLKHMVDDKIHSRARGPVQNL 1094

Query: 1061 TRQPVADRKR 1070
             RQP+  R R
Sbjct: 1095 NRQPMEGRSR 1104


>gi|344288485|ref|XP_003415980.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
            [Loxodonta africana]
          Length = 1010

 Score =  537 bits (1384), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 351/971 (36%), Positives = 503/971 (51%), Gaps = 112/971 (11%)

Query: 252  GGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA---- 307
            G   V ++ ++  E+PI I+F ALG  SD++I+  I +  ED  ++ ++  S+ +A    
Sbjct: 89   GQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQ 148

Query: 308  -DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQK 357
              N    F   R A         +KY  ++++    P    ++ C             +K
Sbjct: 149  EQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFC-----------ETKK 197

Query: 358  ARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQR 417
            A FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL        A   + M K L +
Sbjct: 198  AYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLL--------AFLFRGMFKNLLK 249

Query: 418  D--LYGDRTVR-----PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRA 470
            +  +Y  + +       +E  +   I+++GL  + +TG W    K  +  +G+   L R 
Sbjct: 250  EVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRL 309

Query: 471  NPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVS 530
                TL  LRR    +   GK+   R  H + WG +C   TP+G   GLVKNL +   +S
Sbjct: 310  TFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS 369

Query: 531  T-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRR 589
              S   PI E L    ME L + +  ++    K+FV+G W+G+ KD    ++ LR+ RR+
Sbjct: 370  VGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQ 429

Query: 590  KEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVE---------NMGKIKSLEGKNYTF 639
             ++  ++V + RD  + E+RI+ DAGRI RPLL+VE         ++ ++K  E  NY++
Sbjct: 430  MDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSW 489

Query: 640  QALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPI---KFTHCELDMSFLLGLSCG 696
            Q L+  G++E + T EEE    A        D+++K+      +THCE+  S +LG+   
Sbjct: 490  QDLVASGVVEYIDTLEEETVMLAM----TPDDLQEKEVAYCSTYTHCEIHPSMILGVCAS 545

Query: 697  IIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLG 756
            IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+H L+YPQ+PL  T   +   
Sbjct: 546  IIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSME--- 601

Query: 757  KPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAE 816
                     L   EL  G N+IVA+  + GYNQEDS++MNR++++RG FRS   RSYK  
Sbjct: 602  --------YLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKE- 652

Query: 817  VDNKEMQVKRRSSDDMVNFGKIQSKIGR------VDSLDDDGFPFIGANLQSGDIVIGKY 870
                  Q  ++  D    F K   +  +       D LDDDG    G  +   D++IGK 
Sbjct: 653  ------QESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKT 706

Query: 871  AD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPC 915
                             +  D S  L+ +E G+V +V+++ N +G  F  + +R VR P 
Sbjct: 707  VTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQ 766

Query: 916  LGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGI 975
            +GDKF+S HGQKG  G    QE+ PFT +GI PDI+INPHA PSR T G L+E   GK  
Sbjct: 767  IGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGK-- 824

Query: 976  AALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIG 1034
             +  KG        ATPF    +V  I+  L   G+   G E LY+G TG  + S IFIG
Sbjct: 825  VSANKGEIGD----ATPFNDAVNVQKISNLLSEYGYHLRGNEVLYNGFTGRKITSQIFIG 880

Query: 1035 PTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLH 1094
            PT+YQRL HM +DK+  R  GP+  L RQP+  R R GG++FGEMERDC IAHGAA  L 
Sbjct: 881  PTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLR 940

Query: 1095 ERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKL 1154
            ERLF  SD YQ+H+C  C  +A           +     CR C +   I    +PY  KL
Sbjct: 941  ERLFEASDPYQVHVCNLCGIMAI-------ANTRTHTYECRGCRNKTQISLVRMPYACKL 993

Query: 1155 LCQELFSMGIT 1165
            L QEL SM I 
Sbjct: 994  LFQELMSMSIA 1004


>gi|156937444|ref|YP_001435240.1| DNA-directed RNA polymerase subunit B [Ignicoccus hospitalis KIN4/I]
 gi|156566428|gb|ABU81833.1| DNA-directed RNA polymerase, subunit B' [Ignicoccus hospitalis
            KIN4/I]
          Length = 1132

 Score =  536 bits (1381), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 392/1199 (32%), Positives = 608/1199 (50%), Gaps = 156/1199 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            ++F E GLVS Q+ SYN+F+   +QK  +  GE  VEP ++   K E    +  +R+G+ 
Sbjct: 19   AYFKEKGLVSQQLESYNKFVTETMQKLIEELGE--VEP-FESGYKLE----FIKIRYGEP 71

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             + + S      G    + P   R++++TY++         +Y   R+ + K +   E +
Sbjct: 72   IIKEKS------GGTRPVTPTECRIRDLTYAA--------PIYVYMRLRNPKGEIKDEGW 117

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
            ++            IG +PVMV+S L  +        VE G+   D GGYFI+ G+EKV 
Sbjct: 118  VE------------IGMMPVMVRSILDPLSKKSPEELVEAGEDPRDPGGYFIVDGSEKVI 165

Query: 206  VAQEQICLKRLWVSNSMGW-TVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYF--L 262
            V QE + L ++ V       TV + ++     L  R+  +   E  K G   L   F  L
Sbjct: 166  VTQEDLALNKVLVDKGGPQSTVTHTAKVLSTTLGYRVQVI--VERQKDG--TLHAIFPPL 221

Query: 263  STEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA------DNKCDEFRK 316
              +IP+ +L  ALG+ SDK+I +L+ F   D  +   L  SI  A      D+  D F  
Sbjct: 222  PGKIPLVVLIRALGIESDKDITSLVSF---DPEVQQELLPSIEQAASVPTVDDALD-FIG 277

Query: 317  GRNALKYV-DKLIKGTTFPPGESTEECMNTYLFPSLHGTKQ----KARFLGYMVKCLLQA 371
             R A+    DK I        E  ++ ++  L P L    +    KA FL +M + LL+ 
Sbjct: 278  ARIAIGMPRDKRI--------ERAKQVLDNNLLPHLGKRPEDRIKKAIFLAHMARKLLEV 329

Query: 372  YSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYY 431
            Y  +R+ D++D + N+RL+LAG++L    + H+      +   L+R +        +   
Sbjct: 330  YLEKREPDDKDHYANRRLKLAGDMLAALFRTHLRGLLNDVGYQLERSVLKGEERLKLRIL 389

Query: 432  LDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGK 491
            + ++ LT+ + +A +TG W     RT    G+   L R N L TL  LRR    +     
Sbjct: 390  IRSNYLTDKVRQALATGNWVG--NRT----GVSQLLDRTNWLSTLSHLRRVVSPLARNQP 443

Query: 492  VGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFNS------- 544
              +AR  H + WG+IC   TP+G N GLVKNL ++  +S  + E   E++ +        
Sbjct: 444  HYEARELHMTQWGRICPFETPEGPNIGLVKNLALSAHISVGVPEEEVEKVLDELGVIRVE 503

Query: 545  -GMEKLADDASY---SLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEI-- 598
              +EK+ +D      ++ G  +VF++G  +G  KD+     ++R+ RR+ +L  +V +  
Sbjct: 504  EVLEKVKNDEPVPEEAISGA-RVFLNGRPVGYYKDAHELAQKIRQLRRQGKLHYEVSVGV 562

Query: 599  --KRDELQSEVRIFMDAGRILRPLLVVENMGKIK-------SLEGKNYTFQALLDHGIIE 649
                D    EV I  D GR++RP+ VVEN G++K        ++   +TF+ LL  GI+E
Sbjct: 563  YENDDGTIKEVYINTDPGRVMRPVFVVEN-GELKLKPEHVEKVKKGEWTFKDLLMRGIVE 621

Query: 650  LVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRV 709
            L+  +EEE+   A        + ED  P K TH E+ +  + G+    IP+  H+ + R 
Sbjct: 622  LLDADEEENALIAI-------EPEDITP-KHTHMEIWVPAVFGVVASTIPYLEHNQSPRN 673

Query: 710  LYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRP 769
             YQS   + QA+G    N  +R DT  + L YP++PL +T   + +G     +N    RP
Sbjct: 674  SYQSA-MAKQALGLYAANFMLRTDTRGYLLHYPEKPLAQTKHLEIIG-----YNK---RP 724

Query: 770  ELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDN----KEMQVK 825
                GQNA+ A+  + GYN ED+++MN++S++RG  R+  +R Y+ E        E +++
Sbjct: 725  ---AGQNAVAAILSYTGYNIEDAIIMNQSSIDRGFMRATFMRLYQTEEQKYPGGAEDKIE 781

Query: 826  RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGK---------YADSGA- 875
            +   D  +  G  + K    + LD+DG       +  GD++IGK         Y + G  
Sbjct: 782  KPKPDQRL-VGMREPKA--YEKLDEDGIVEPETYVVGGDVLIGKSSPPRFTEEYKEMGIL 838

Query: 876  -----DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVL 930
                 D S+ ++H E G+V  V+L+ N DG     V +R +R P +GDKF+S HGQKGV+
Sbjct: 839  ETRRRDASVAVRHGEEGVVDTVILTENIDGIKMVKVRVRSLRIPEIGDKFASRHGQKGVI 898

Query: 931  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYA 990
            G +    + P++  G+VPDI++NPHAFPSR T GQL+E+   K  A  G+ +       A
Sbjct: 899  GMVLPHYDMPYSEFGLVPDIILNPHAFPSRMTLGQLIESIAAKAAAFRGREVD------A 952

Query: 991  TPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVK 1050
            TPF    +D + + L   GF   GTE ++DGRTGEM+   +FIG  FYQRL HM  DK+ 
Sbjct: 953  TPFYKEPLDNLRKILVERGFPPDGTEVMFDGRTGEMIARPVFIGVVFYQRLYHMVSDKIH 1012

Query: 1051 FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICR 1110
             R  GPV  LTRQP   R R GG++FGEMERD L+AHGA+  L ERL   SD+ ++ +C 
Sbjct: 1013 ARARGPVQILTRQPTEGRTRKGGLRFGEMERDVLVAHGASQLLVERLLKSSDATKVWVCA 1072

Query: 1111 KCKNVANVIQRVVGGGRKVRG-PYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
            KC +        +G     +G P C I     ++ +  + Y  KLL QE+ SMGI  + 
Sbjct: 1073 KCGH--------IGWWDANKGKPVCPIHGERGEMYQVELSYAFKLLIQEILSMGIAARL 1123


>gi|118364886|ref|XP_001015664.1| DNA-directed RNA polymerase, beta subunit family protein [Tetrahymena
            thermophila]
 gi|89297431|gb|EAR95419.1| DNA-directed RNA polymerase, beta subunit family protein [Tetrahymena
            thermophila SB210]
          Length = 1226

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 406/1272 (31%), Positives = 625/1272 (49%), Gaps = 166/1272 (13%)

Query: 1    MDSDDNGF----TDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQ 56
            MD +++ F    + P    +L E   +  C K    +F + GL SHQI SYN FI++ L 
Sbjct: 1    MDEEESFFEGENSAPVYDDELNENIDQDDCWKIIDEYFKDNGLCSHQIKSYNHFIES-LP 59

Query: 57   KAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKP-------------SFFAGNG 103
               + F +  V P  +     + E +  S     +T D+P             +F  G  
Sbjct: 60   LIMEDF-KIEVRPTENYMNSNKKEQQIRSQTSYTLTFDRPRKPLPPQKFHMERTFGWGRR 118

Query: 104  GDE-------HDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEV 156
            G +         ++P  AR+ ++ Y   +K+ VQ        V + K   G EQ   KE+
Sbjct: 119  GQDAQSSSHAQKIYPMMARISDLDYFVEIKIPVQL-------VRTIKHPDGTEQ---KEL 168

Query: 157  LS--DETTNII-IGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVA 207
            ++  D+  N+I + ++PVMV+S  C + G      ++ G+C FD GGYFIIKG+EKV +A
Sbjct: 169  ITSRDKNQNLITLFKLPVMVQSMYCSLAGENLEGRIKHGECQFDQGGYFIIKGSEKVIIA 228

Query: 208  QEQICLKRLWV----SNSMGWTVAYKS-ENKRNRLIVRLVDMSKFEDIKGGEKVLSVY-- 260
            QE++    ++V       M W    +S  +K N +  +     K  D   GE  L     
Sbjct: 229  QERMAFNFVYVFQQKDPKMPWIAEIRSIRDKTNAVQSKFALKLKLRD---GEYQLYARCK 285

Query: 261  FLSTEIPIWILFFALG-VSSDKEIVNLIDFTCEDC---SILNILFASIHDADNKCDEFRK 316
             ++ +IPI++L  ALG V SDKE++  I +  +D     ++ +L +S+  A + C+    
Sbjct: 286  LINEDIPIFVLLKALGCVESDKEMMERIFYNLKDPKNEQMMEMLRSSLLLAQH-CN---N 341

Query: 317  GRNALKYVDKLIKGTTFPPG-----ESTEECMNTYLFPSLHGTKQ-----KARFLGYMVK 366
             R AL ++   I  TT   G     +S E+ +  YL P + GT++     K  F+GYM++
Sbjct: 342  KREALIFIGYRINATTNYRGSQEAMQSAEDTLKLYLLPHI-GTQESDNDKKLFFIGYMIQ 400

Query: 367  CLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLY-----G 421
             LL A  G+ + D+RD +  KRL++AG L+ +  K  +   +K   K LQ+ +       
Sbjct: 401  KLLNAALGKTQEDDRDHYGKKRLDMAGALISQLFKERLRIFQKNAKKNLQQKINDISRDA 460

Query: 422  DRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPL-QTLVDLR 480
             +++  I    D  ++++ +  A +TG W          +G+   L R   L  T+  +R
Sbjct: 461  QKSLNVIVDIFDHKLISDHIRLALATGNWGQTADGEVVKTGVAQVLKRDTSLFATMSHMR 520

Query: 481  RTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST--------S 532
            R    ++   K+   R  H +H+G IC   TP+G+  G+VKNL +   VS          
Sbjct: 521  RVNAPMKSAAKLARPRQLHNTHYGLICPAETPEGQKIGMVKNLSLLAQVSLGLSSQDNLK 580

Query: 533  ILEPIFEQL-----FNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKR 587
            I E + EQ+      N  +EK+            KVF +G+WIG  +     +   +  R
Sbjct: 581  IQEQLEEQINQFDILNLKLEKIPYQT--------KVFFNGNWIGFTETPEQIIDVFKEIR 632

Query: 588  RRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENM--GK-------------IKSL 632
            R +++     I RD +  E+RI+ D GR +RP+  V+ +  GK             ++  
Sbjct: 633  RLQKIDG-FSIVRDIINKEIRIYTDQGRGMRPVFTVQEICEGKNRLKITKSKLYAILQQF 691

Query: 633  EGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIK-YLLKDIEDKKPIKFTHCELDMSFLL 691
            EGK   FQ L+D G IEL+  EEEE    A  I  +   D   +  + FTHCE+  + +L
Sbjct: 692  EGK--AFQKLIDEGFIELLDVEEEEGALIAVDINDFYHTDDPRRTNLPFTHCEIHPAMIL 749

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G+   +IPF +H+   R   QS     QA+G  +TN  +R+DTL H L+YPQ  L     
Sbjct: 750  GVCASVIPFGHHNQGPRNTLQS-AMGKQAMGLNSTNFHMRLDTLCHILYYPQIALAS--- 805

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
            S  L          +   ++  G NA+VA+    GYNQEDS+++N+++++RG+FRS   R
Sbjct: 806  SKSL--------QYITAKDIPIGSNAVVAIACFTGYNQEDSIIINQSAIDRGLFRSILYR 857

Query: 812  SYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVD----SLDDDGFPFIGANLQSGDIVI 867
            +YK     + M +      + + F   +  I         LD DG    G  +   D++I
Sbjct: 858  TYKTTEKKEHMGLN--PVIEHIRFPDEKKTIIPASYSFLKLDYDGIIPPGTQVTGEDVLI 915

Query: 868  GKYAD----SGADH-----SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGD 918
            GK  +     G+D      S+  + +E G V  V+LS + DG     V LR  R P +GD
Sbjct: 916  GKVVELPKTEGSDKQYKDVSLGCRRSEIGYVDTVILSEDKDGMYIVKVKLRSNRIPQIGD 975

Query: 919  KFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAL 978
            KF+S HGQKG  G     E+ P+ I+GI+ ++VINPH  PSR T G ++E  L   +++L
Sbjct: 976  KFASRHGQKGTCGMTIRGEDLPYNIEGIIAELVINPHCIPSRMTIGHMIEG-LNSKLSSL 1034

Query: 979  GKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFY 1038
             KGI       ATPF+   +  I  +LH  G+ ++G E LY+  TG  + + I+ GPTFY
Sbjct: 1035 -KGIWGD----ATPFSGIKLQDIASELHTYGYQRYGNEVLYNPYTGMRLSTQIYYGPTFY 1089

Query: 1039 QRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLF 1098
            QRL H+ +DK+  R+ GPV  + RQP   R R GG++FGEMERDC+IAHG +  L ER F
Sbjct: 1090 QRLRHLVDDKMYSRSRGPVVAIVRQPTHGRSRGGGLRFGEMERDCIIAHGTSNFLKERTF 1149

Query: 1099 TLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPY-CRICDSGD----DIVKANVPYGAK 1153
             +SD ++ H+C +C   A                Y C  C  GD     IV+  +PY AK
Sbjct: 1150 GVSDQFRTHVCSRCGLFAK--------ADVTNHKYDCTGCSQGDKKHYKIVQVYLPYAAK 1201

Query: 1154 LLCQELFSMGIT 1165
             L QEL +M I 
Sbjct: 1202 QLIQELMAMHIV 1213


>gi|410932093|ref|XP_003979428.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like, partial
            [Takifugu rubripes]
          Length = 982

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 359/1030 (34%), Positives = 527/1030 (51%), Gaps = 112/1030 (10%)

Query: 204  VFVAQEQICLKRLWVSNSMGWTVAYKSE-------NKRNRLIVRLVDMSK----FEDIKG 252
            V +AQE++    ++V        AY SE       + R    + +  M++     +    
Sbjct: 1    VLIAQEKMATNTVYVFAKKDSKYAYTSECRSCLENSSRPTSTIWVSMMARGGQGVKKSAI 60

Query: 253  GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA---- 307
            G++++S   ++  E+PI I+F ALG  SD++I+  I +  +D  ++ ++  S+ +A    
Sbjct: 61   GQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ 120

Query: 308  -DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQK 357
              N    F   R A         +KY  ++++    P    ++ C             +K
Sbjct: 121  EQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEMLPHVGVSDFC-----------ETKK 169

Query: 358  ARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQR 417
            A FLGYMV  LL A  GRR+ D+RD + NKRL+LAG LL    +    +  K +    Q+
Sbjct: 170  AYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQK 229

Query: 418  DLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLV 477
             +   +    +E  +   I+++GL  + +TG W    K  +  +G+   L R     TL 
Sbjct: 230  FIDRGKDFN-LELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS 288

Query: 478  DLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEP 536
             LRR    +   GK+   R  H + WG +C   TP+G   GLVKNL +   +S  S   P
Sbjct: 289  HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP 348

Query: 537  IFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKE-LPTQ 595
            I E L    ME L + +  ++    K+FV+G W+G+ KD    ++ LR+ RR+ + + ++
Sbjct: 349  ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE 408

Query: 596  VEIKRDELQSEVRIFMDAGRILRPLLVVE---------NMGKIKSLEGKNYTFQALLDHG 646
            V + RD  + E+RI+ DAGRI RPLL+VE         ++ ++K  E  NY++Q L+  G
Sbjct: 409  VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG 468

Query: 647  IIELVGTEEEEDCCTAWGIKYLLKDIEDKKPI---KFTHCELDMSFLLGLSCGIIPFANH 703
            ++E + T EEE    A        D+++K       +THCE+  S +LG+   IIPF +H
Sbjct: 469  VVEYIDTLEEETVMLAM----TPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDH 524

Query: 704  DHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHN 763
            + + R  YQS     QA+G   TN  +R+DTL+H L+YPQ+PL  T   +          
Sbjct: 525  NQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSME---------- 573

Query: 764  HILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAE-----VD 818
              L   EL  G N+IVA+  + GYNQEDS++MNR++++RG FRS   RSYK +      D
Sbjct: 574  -YLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFD 632

Query: 819  NKEMQVK--RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD---- 872
             +E+  K  R +   M        +    + LDDDG    G  +   D++IGK       
Sbjct: 633  QEEIFEKPTRETCQGM--------RHAIYEKLDDDGLIAPGVRVSGEDVIIGKTVTLPDN 684

Query: 873  -----------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFS 921
                       +  D S  L+ +E G+V +V+++ N +G  F  + +R VR P +GDKF+
Sbjct: 685  EDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFA 744

Query: 922  SMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKG 981
            S HGQKG  G    QE+ PFT +GI PDI+INPHA PSR T G L+E   GK   +  KG
Sbjct: 745  SRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGK--VSANKG 802

Query: 982  ICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQR 1040
                    ATPF    +V  ++  L   G+   G E LY+G TG  + S IFIGPT+YQR
Sbjct: 803  EIGD----ATPFNDAVNVQKVSNLLSEYGYHLRGNEVLYNGFTGRKLTSQIFIGPTYYQR 858

Query: 1041 LIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTL 1100
            L HM +DK+  R  GPV  L RQP+  R R GG++FGEMERDC IAHGAA  L ERLF  
Sbjct: 859  LKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLKERLFEA 918

Query: 1101 SDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELF 1160
            SD YQ+H+C  C  +A           +     CR C +   I    +PY  KLL QEL 
Sbjct: 919  SDPYQVHVCNLCGLMAI-------ANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELM 971

Query: 1161 SMGITLKFDT 1170
            SM I  +  T
Sbjct: 972  SMSIAPRMMT 981


>gi|126465702|ref|YP_001040811.1| DNA-directed RNA polymerase subunit B [Staphylothermus marinus F1]
 gi|126014525|gb|ABN69903.1| DNA-directed RNA polymerase, subunit B' / DNA-directed RNA
            polymerase, subunit B' [Staphylothermus marinus F1]
          Length = 1156

 Score =  534 bits (1376), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 402/1225 (32%), Positives = 597/1225 (48%), Gaps = 178/1225 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            SFF E+GLV   ++SYN FI + L +      E  +         G  +      R G  
Sbjct: 19   SFFEEFGLVRQHLDSYNRFIDHLLPEIISEHKEITI--------SGNRKLLIKGYRIG-- 68

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
               +P      G  E  + P   RL+N TY+  + +KV  Q         D+    +EQ 
Sbjct: 69   --SEPKIRTIEGF-ERTVTPLECRLRNFTYAVPIYLKVALQ---------DETGIYKEQE 116

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
            I+   L D         +PVM+KS +  +        V  G+   D GGYFII G+EKV 
Sbjct: 117  IK---LMD---------LPVMLKSKIDPLSKMTAEELVAIGEDPKDPGGYFIINGSEKVL 164

Query: 206  VAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSK-------FEDIKGGEKVLS 258
            VAQE +       SN++   V Y SE      I +++ ++K        E  K G  +  
Sbjct: 165  VAQEDLA------SNNI--LVDYASEGSSATHIAKVISVAKGRRSQLVIERRKDG--IFY 214

Query: 259  VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGR 318
                   IP+ IL  ALG++S+ EI   +     D  +   L  SI  A +         
Sbjct: 215  ANLHGHRIPVVILMTALGLASELEITYAVSL---DPDLQTYLLPSIMQAQSVFPRLEIPE 271

Query: 319  NALKYVDKLIK---------------GTTFPPGESTEE-------CMNTYLFPSLHGT-- 354
            NA     K I+               G     G   EE        ++ YL P + GT  
Sbjct: 272  NASPEEQKRIEEEHRRKTIETALDYIGARIAIGRPREERIRRAQRALDEYLLPHI-GTEP 330

Query: 355  -----KQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARK 409
                 ++KA F+G MV  L++    RRK D++D +RNKRL+LAG+LL + ++ ++     
Sbjct: 331  TPEVRRKKAYFIGQMVNKLIELIVDRRKPDDKDHYRNKRLKLAGDLLAQLVRHNLVTYFI 390

Query: 410  RMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGR 469
            R  K+     Y       ++  +   +LT+ +  A +TG W  P  +T    G+   L R
Sbjct: 391  REVKSSIERSYSKYGRLDLKLVIKPGMLTDRILHAMATGNW--PGGKT----GVSQLLDR 444

Query: 470  ANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLV 529
             N + TL  LRR    ++ T    +AR  HP+ WG++C   TP+G N GLVKNL +   V
Sbjct: 445  TNLMSTLSHLRRVVSPLKRTQPHFEARELHPTQWGRMCPFETPEGANIGLVKNLALMAHV 504

Query: 530  STSI----LEPI-FEQLFNSGMEKLADDASYSLGGKF----------KVFVDGDWIGVCK 574
            S  +    +EPI + +L    ++++ ++   ++ G+           +V+++G  IG   
Sbjct: 505  SVGVPEEHIEPILYRKLGVKNLDEIIEEIKKAITGEVEEYPDYTSWSRVYLNGRLIGYHP 564

Query: 575  DSLSFVSELRRKRRRKELPTQVEIK--RDELQSEVRIFMDAGRILRPLLVVENMGKIK-- 630
            D      E+R  RRR ++  +V +   RDE  +EV I  DAGRI RPLLVVEN GK+K  
Sbjct: 565  DGKKLAQEIRNLRRRGKISVEVNVAHIRDEHLNEVYINTDAGRIRRPLLVVEN-GKLKLK 623

Query: 631  -----SLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCEL 685
                  L+   + F  L+  GIIE +  +EEE+   A           D+   + TH E+
Sbjct: 624  PEHIAKLKSGEWKFSDLVKRGIIEYLDADEEEEAYIAL--------TPDQITPEHTHMEI 675

Query: 686  DMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRP 745
                ++G++  IIP+A H+ + R  Y++   + Q++G  + N   R+DT  H L YPQ+P
Sbjct: 676  WTPAIMGITASIIPYAEHNQSPRNSYEAAM-AKQSLGLYSANFQQRMDTRGHLLHYPQKP 734

Query: 746  LFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMF 805
            L +T   +       G+N    RP    GQN +VAV    GYN ED+L+MN++S++RG+ 
Sbjct: 735  LVQTRAMEV-----NGYNE---RPA---GQNMVVAVMSFTGYNIEDALIMNKSSVDRGLA 783

Query: 806  RSEHIRSYKAEVDNKEMQVKRRSSDD-MVNFGKIQSKIG--RVDSLDDDGFPFIGANLQS 862
            RS   R Y       E +      D  M+    ++   G    + LD+DG       ++ 
Sbjct: 784  RSTFFRLYT----TVEYRYPGGQEDRIMIPPSNVRGYRGPKAYEKLDEDGIVSPETPVKG 839

Query: 863  GDIVIGKYADS----------GA-----DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVS 907
            GD++IGK +            GA     D S+  +H E+G+V  V+++++ DG     V 
Sbjct: 840  GDVLIGKISPPRFMTAQEYTVGAGITRQDASVVTRHGEKGIVDVVMVTTDIDGNRLVKVR 899

Query: 908  LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLL 967
            +R +R P LGDKF+S HGQKGV+G L  Q++ PFT +GIVPD++INPHAFPSR T GQL+
Sbjct: 900  VRDLRIPELGDKFASRHGQKGVIGLLVPQQDMPFTEEGIVPDLIINPHAFPSRMTVGQLI 959

Query: 968  EAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMV 1027
            E+  GK  A  G+ +       ATPF    +D +   L R G+   G E +YDGRTGE++
Sbjct: 960  ESIAGKAAALEGRFVD------ATPFHKEPIDNLMITLKRHGYPMSGYETMYDGRTGEIL 1013

Query: 1028 RSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAH 1087
            ++ IFIG  +YQ+L HM  DK+  R  GPV  LTRQP   R + GG++FGEME DCL+ H
Sbjct: 1014 KTPIFIGIVYYQKLHHMVADKIHARARGPVQILTRQPTEGRAKEGGLRFGEMEVDCLVGH 1073

Query: 1088 GAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPY-CRICDSGDDIVKA 1146
            GA+  L E++   SD   +++C  C +        +G   ++RG Y C I      +   
Sbjct: 1074 GASLLLKEQMLDKSDKTTIYVCELCGH--------IGYYDRIRGKYMCPIHKDKGKLKPV 1125

Query: 1147 NVPYGAKLLCQELFSMGITLKFDTE 1171
             V Y  KLL QEL SM I  +   E
Sbjct: 1126 EVSYAFKLLVQELMSMCIMPRLKLE 1150


>gi|297527625|ref|YP_003669649.1| DNA-directed RNA polymerase subunit B [Staphylothermus hellenicus DSM
            12710]
 gi|297256541|gb|ADI32750.1| DNA-directed RNA polymerase subunit B [Staphylothermus hellenicus DSM
            12710]
          Length = 1156

 Score =  533 bits (1374), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 402/1229 (32%), Positives = 600/1229 (48%), Gaps = 186/1229 (15%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            SFF E+GLV   ++SYN FI + L +      E  +         G  +      R G  
Sbjct: 19   SFFEEFGLVRQHLDSYNRFIDHLLPEIISEHKEIKI--------SGSRKLLIKGYRIG-- 68

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
              ++P      G  E  + P   RL+N TY+  + ++V  Q         D+    +EQ 
Sbjct: 69   --NEPKIRTIEGF-ERTVTPLECRLRNFTYAVPVYLRVALQ---------DETGIYKEQE 116

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSD---LCWMKGVEK---GDCDFDHGGYFIIKGAEKVF 205
            I+   L D         +PVM+KS    L  M   E    G+   D GGYFII G+EKV 
Sbjct: 117  IK---LMD---------LPVMLKSKIDPLSKMTAEELIAIGEDPKDPGGYFIINGSEKVL 164

Query: 206  VAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSK-------FEDIKGGEKVLS 258
            VAQE +       SN++   + Y SE      I +++ ++K        E  K G  +  
Sbjct: 165  VAQEDLA------SNNI--LIDYASEGSSATHIAKVISVAKGRRSQLVIERRKDG--IFY 214

Query: 259  VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGR 318
                   IP+ IL  ALG++S+ EI + +     D  +   L  SI  A +   +     
Sbjct: 215  ANLHGHRIPVVILMTALGLASELEITHAVSL---DPDLQTYLLPSIMQAQSIFPKLEIPE 271

Query: 319  NALKYVDKLIK---------------GTTFPPGESTEE-------CMNTYLFPSLHGT-- 354
            NA     K I+               G     G   EE        ++ YL P + GT  
Sbjct: 272  NASSEEQKRIEEEHRRKTIEIALDYIGARIAIGRPREERIRRAQRALDEYLLPHI-GTEP 330

Query: 355  -----KQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARK 409
                 ++KA F+G MV  L++   GRRK D++D +RNKRL+LAG+LL + ++ ++     
Sbjct: 331  TPEVRRKKAYFIGQMVNKLIELIVGRRKPDDKDHYRNKRLKLAGDLLAQLIRHNLVTYFI 390

Query: 410  RMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGR 469
            R  K+     Y       ++  +   +LT+ +  A +TG W  P  +T    G+   L R
Sbjct: 391  REVKSSIERSYSKYGKLDLKLVIKPGMLTDRILHAMATGNW--PGGKT----GVSQLLDR 444

Query: 470  ANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLV 529
             N + TL  LRR    ++ T    +AR  HP+ WG++C   TP+G N GLVKNL +   V
Sbjct: 445  TNLMSTLSHLRRVVSPLKRTQPHFEARELHPTQWGRMCPFETPEGANIGLVKNLALMAHV 504

Query: 530  STSI----LEPI-FEQLFNSGMEKLADDASYSLGGKF----------KVFVDGDWIGVCK 574
            S  +    +EPI +E+L    +E++  +   ++ G+           +V+++G  IG   
Sbjct: 505  SVGVPEEHIEPILYEKLGVKSIEEIIGEVKKAVTGELEEYPDYTSWSRVYLNGRLIGYYP 564

Query: 575  DSLSFVSELRRKRRRKELPTQVEIK--RDELQSEVRIFMDAGRILRPLLVVENMGKIK-- 630
            D      E+R  RRR ++  +V +   +DE  +EV I  DAGRI RPLLVVEN GK+K  
Sbjct: 565  DGKKLAEEIRNMRRRGKISIEVNVAHIQDEHLNEVYINTDAGRIRRPLLVVEN-GKLKLK 623

Query: 631  -----SLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCEL 685
                  L+   + F  L+  GIIE +  +EEE+   A           D+   + TH E+
Sbjct: 624  PEHIAKLKSGEWKFSDLVKKGIIEYLDADEEEEAYIAL--------TPDQITPEHTHMEI 675

Query: 686  DMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRP 745
                ++G++  IIP+A H+ + R  Y++   + Q++G  + N   R+DT  H L YPQ+P
Sbjct: 676  WTPAIMGITASIIPYAEHNQSPRNSYEAAM-AKQSLGLYSANFQRRMDTHGHLLHYPQKP 734

Query: 746  LFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMF 805
            L +T   +       G+N    RP    GQN +VAV    GYN ED+L+MN++S++RG+ 
Sbjct: 735  LVQTRAMEV-----NGYNE---RPA---GQNMVVAVMSFTGYNIEDALIMNKSSVDRGLA 783

Query: 806  RSEHIRSYKAEVDNKEMQVKRR---SSDDMVNFGKIQSKIGR----VDSLDDDGFPFIGA 858
            RS   R Y          V+ R     +D +       +  R     + LD+DG      
Sbjct: 784  RSTFFRLYTT--------VEYRYPGGQEDKITIPPSNVRGYRGPKAYEKLDEDGIVSPET 835

Query: 859  NLQSGDIVIGKYADS----------GA-----DHSIKLKHTERGMVQKVVLSSNDDGKNF 903
             ++ GD++IGK +            GA     D S+  +H E+G+V  V+++++ DG   
Sbjct: 836  PVKGGDVLIGKISPPRFMTAQEYTVGAGITRQDASVVTRHGEKGIVDLVMVTTDIDGNRL 895

Query: 904  SVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTP 963
                +R +R P LGDKF+S HGQKGV+G L  Q++ PFT +GIVPD++INPHAFPSR T 
Sbjct: 896  VKARVRDLRIPELGDKFASRHGQKGVIGLLVPQQDMPFTEEGIVPDLIINPHAFPSRMTV 955

Query: 964  GQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRT 1023
            GQL+E+  GK  A  G+ +       ATPF    ++ +   L R G+   G E +YDGRT
Sbjct: 956  GQLIESIAGKAAALEGRFVD------ATPFHKEPIENLMITLKRHGYPMSGYETMYDGRT 1009

Query: 1024 GEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDC 1083
            GE++++ IFIG  +YQ+L HM  DK+  R  GPV  LTRQP   R + GG++FGEME DC
Sbjct: 1010 GEILKTPIFIGIVYYQKLHHMVADKIHARARGPVQILTRQPTEGRAKEGGLRFGEMEVDC 1069

Query: 1084 LIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPY-CRICDSGDD 1142
            L+ HGA+  L E++   SD   +++C  C +        +G   ++RG Y C I      
Sbjct: 1070 LVGHGASLLLKEQMLDKSDKTTIYVCELCGH--------IGYYDRIRGKYVCPIHKDKGK 1121

Query: 1143 IVKANVPYGAKLLCQELFSMGITLKFDTE 1171
            +    V Y  KLL QEL SM I  +   E
Sbjct: 1122 LKPVKVSYAFKLLVQELMSMCIMPRLKLE 1150


>gi|322510564|gb|ADX05878.1| putative DNA-directed RNA polymerase [Organic Lake phycodnavirus 1]
          Length = 1164

 Score =  533 bits (1372), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 371/1203 (30%), Positives = 584/1203 (48%), Gaps = 134/1203 (11%)

Query: 39   LVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSF 98
            LV HQ++SYN+F++N L K  + F   I++  +D   + +       + F  +++ +P  
Sbjct: 25   LVKHQVDSYNDFVQNQLIKTIEMFNPLIIKSPHDYLPEYKKYRLEVEINFVNLSIYRPEI 84

Query: 99   FAGNGGDEHDMFPRHARLQNMTYSSR--MKVKVQFQVYTQKRVTSDKFKTGREQYIQKEV 156
               NG  +  MFP  ARL++ TYSS   + + +++ +     + +++FK      IQ   
Sbjct: 85   HENNGSSKL-MFPSDARLRSFTYSSNFTLDMNIKYTIRKGANLENEEFKHIHLSKIQ--- 140

Query: 157  LSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVFVAQEQ 210
                      G+IP+M+ S +C +K           +C  D GGYFII G+EK  + QE+
Sbjct: 141  ---------FGKIPIMLNSCICVLKQYPHIHPDNIDECKMDPGGYFIINGSEKTCLGQEK 191

Query: 211  ICLKRLWV-----SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIK--GGEKVLSVYFLS 263
                +++      SN   WT  ++S      +  + + M     +   G + ++ +  L 
Sbjct: 192  TADNKVFCFKQKQSNKWLWTAEFRSVPDWKCISPKQIYMMLNSKLSAYGHDILVQLPRLK 251

Query: 264  TEIPIWILFFALGVSSDKEIVNLIDFTC-EDCSILNILFASIHDADNKCDEFRKGRNALK 322
              IP+++LF ALG+ SDK+I N+I     ++  +L  L ASI++      E+    +AL+
Sbjct: 252  KPIPLFVLFRALGIESDKKICNIILLNSNKESKLLEYLKASIYEGA----EYNNYEDALQ 307

Query: 323  YVDKLIKGTTFPP------------GESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQ 370
            Y+   I    + P             E  ++ ++  LFP     ++K   LG+M K ++ 
Sbjct: 308  YI---ISNVIYTPINMDKDEGHRKKTEFAKDVLSNDLFPHCKTKEEKIYLLGFMTKKIIL 364

Query: 371  AYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQR-----------DL 419
            AYSG  K  +RD + NKR+EL G LL    + +     K + K + R           D 
Sbjct: 365  AYSGIEKQTDRDSYENKRVELTGTLLNNLFRNYFNKVVKDIQKQVIREINNGSWKSSEDY 424

Query: 420  YGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDL 479
            +   T+  I   + ++ + NGL RA STG +      T ++ G+   L R   L TL  L
Sbjct: 425  FNIITLTNIYKIVKSTTIENGLKRALSTGDFGIKSMNTNKV-GVAQVLNRLTYLSTLSHL 483

Query: 480  RRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIF 538
            RR    +  +GK+ + R  H S WG +C   TP+G++ G+VKN+     VST S   PI+
Sbjct: 484  RRVNTPIDKSGKLVEPRKLHGSTWGFLCPAETPEGQSVGVVKNISYMTNVSTYSDSTPIY 543

Query: 539  EQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEI 598
            E      +  L    +     K KVFV+G WIG+  + ++   +L++K+    +     I
Sbjct: 544  E-FIKPYLYPLDHYETEDFYDKVKVFVNGRWIGITHNPITLFKDLKQKKHNGMIHIYCSI 602

Query: 599  KRDELQSEVRIFMDAGRILRPLLVVENM------GKIKSLEGKNYTFQALL-----DHGI 647
              +    E+ +  D GR++RPL  V+N         I+ L+    +++ LL     D  I
Sbjct: 603  VFNYQNKEIYVCNDCGRLVRPLFKVKNNKILLTNNTIQRLKEDELSWRDLLLPLNIDESI 662

Query: 648  IELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHAR 707
            IE + + E+ +          +K  + K+   +THCE+  S + G+    IPF  H+ + 
Sbjct: 663  IEYIDSAEQNNSMIC------MKPNQFKEEYNYTHCEIHPSTIFGVLASCIPFPQHNQSP 716

Query: 708  RVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILP 767
            R  YQ      QAIG   +N + R+D  ++ L Y  RPL  T + +           ++ 
Sbjct: 717  RNTYQCAM-GKQAIGIYVSNFNKRMDKTAYILNYTMRPLVETRVMN-----------MMK 764

Query: 768  RPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVD-----NKEM 822
              +L  G   IVA+  H GYNQEDSL+ NR SL+RG+F   H   Y  E D     N E 
Sbjct: 765  LNQLPCGNQVIVAIMTHGGYNQEDSLLFNRGSLDRGLF---HATIYHTEKDEDKKINGEE 821

Query: 823  QVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA-------DSGA 875
            +++ + + ++        K G  D ++  G       ++  DI+I K         D+  
Sbjct: 822  ELRVKPNPNITR----NMKFGNYDKINKQGVIDENELIEDKDIIISKVVVIKENKNDNTK 877

Query: 876  -----DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVL 930
                 D S   + TE   V K  +  N DG  F  V +R  R P +GDKFSS HGQKG +
Sbjct: 878  LIKYEDQSKSYRTTEECYVDKNYIDRNGDGHTFCKVRVRSTRKPNIGDKFSSRHGQKGTI 937

Query: 931  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAA---LGKGICSGLK 987
            G + ++E+ P+T  G+ PDI+INPHA PSR T  QL E  +GK +      G G      
Sbjct: 938  GNIINEEDMPYTKDGLRPDIIINPHAIPSRMTIAQLKETLIGKLLLKLGLFGDG------ 991

Query: 988  RYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSED 1047
               T F    ++ + ++L +  +   G E LYDG+TGE + + IFIGP +YQRL HM  D
Sbjct: 992  ---TSFGEMDMEEVFKELKKHDYESRGNELLYDGKTGEQIETSIFIGPVYYQRLKHMVND 1048

Query: 1048 KVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMH 1107
            K   R  GP+  LTRQP   R R GG++FGEMERDC+I+HGA+    ER++ +SD Y ++
Sbjct: 1049 KQHSRCIGPMVNLTRQPAEGRSRDGGLRFGEMERDCMISHGASKFTKERIYDVSDKYAVN 1108

Query: 1108 ICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLK 1167
            +C+KC  +A     V      +    C +C++  D     +PY  KLL QEL +M I  +
Sbjct: 1109 VCKKCGMIA-----VYNDKEHIH--LCNVCENRTDFSNVKIPYSCKLLFQELITMNIVPR 1161

Query: 1168 FDT 1170
              T
Sbjct: 1162 IMT 1164


>gi|170084317|ref|XP_001873382.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650934|gb|EDR15174.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 942

 Score =  533 bits (1372), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 329/913 (36%), Positives = 487/913 (53%), Gaps = 90/913 (9%)

Query: 258  SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG 317
            ++ ++  +IPIW++F  LGV SD++I+  I +  +D  +L +L   I D     D     
Sbjct: 57   TIPYIKVDIPIWVVFRGLGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDR---- 112

Query: 318  RNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLH----GTKQKARFLGYMVK 366
              AL ++    +GTT   G S E       E +   + P +        +KA F GYM+ 
Sbjct: 113  EVALDFIGN--RGTT--TGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIH 168

Query: 367  CLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR 426
             LL A   RR+ D+RD F  KRL+LAG LL    ++      K + + LQ+ +   +   
Sbjct: 169  RLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFN 228

Query: 427  PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
             +   +    +TNGL  + +TG W    K     +G+   L R     TL  LRR    +
Sbjct: 229  -LALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPL 287

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSG 545
               GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  S   P+ E L   G
Sbjct: 288  GREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWG 347

Query: 546  MEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQS 605
            +E L ++A  S     KVFV+G W+GV +D  + V  +++ RR+ ++  +V + RD  + 
Sbjct: 348  LESLEENAHSSTPCT-KVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREK 406

Query: 606  EVRIFMDAGRILRPLLVVENM------GKIKSL------EGKNYTFQALLDHGIIELVGT 653
            E+R++ DAGR+ RPL +VEN         +K L      +G  Y ++ L+  GIIEL+  
Sbjct: 407  ELRLYTDAGRVCRPLFIVENQQLALQKKHVKWLSNGLNDDGDEYKWEHLVKGGIIELLDA 466

Query: 654  EEEEDCCTAW-------------GIKYLLKDIEDKKPIK---------FTHCELDMSFLL 691
            EEEE    +              G+     D E     +         +THCE+  S +L
Sbjct: 467  EEEETVMISMTPEDLENSRLQQSGVDLHANDGEFDPAARLKAGTHAHTWTHCEIHPSMIL 526

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G+   IIPF +H+ + R  YQS     QA+G   TN  IR+DT+++ L+YPQ+PL  T  
Sbjct: 527  GICASIIPFPDHNQSPRNTYQSAM-GKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRS 585

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
             +            L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS + R
Sbjct: 586  ME-----------YLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYR 634

Query: 812  SYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA 871
            SY  +++ K    +    +       ++ K G  D ++DDG    G  +   DI+IGK A
Sbjct: 635  SY-MDLEKKSGVQQLEEFEKPTRENTLRMKHGTYDKIEDDGLIAPGTGVAGEDIIIGKTA 693

Query: 872  ---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCL 916
                            +  D S  LK TE G+V +V++++N +G+ F  V +R  R P +
Sbjct: 694  PIPPDSEELGQRTQTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQI 753

Query: 917  GDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIA 976
            GDKF+S HGQKG +G    QE+ PFT +GIVPDI+INPHA PSR T G L+E  L K   
Sbjct: 754  GDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVAT 813

Query: 977  ALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPT 1036
             +G       +  ATPF   +V++++  L + G+   G E +Y G TG  +++ +++GPT
Sbjct: 814  LIGN------EGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPT 867

Query: 1037 FYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHER 1096
            +YQRL HM +DK+  R  GPV  LTRQPV  R R GG++FGEMERDC+I+HG A  L ER
Sbjct: 868  YYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLKER 927

Query: 1097 LFTLSDSYQMHIC 1109
            LF  SD+Y++H+C
Sbjct: 928  LFEASDAYRLHVC 940


>gi|332796432|ref|YP_004457932.1| RNA polymerase subunit B [Acidianus hospitalis W1]
 gi|332694167|gb|AEE93634.1| RNA polymerase subunit B [Acidianus hospitalis W1]
          Length = 1123

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 397/1209 (32%), Positives = 595/1209 (49%), Gaps = 184/1209 (15%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVE-PGYDPSKKGEGEWRYASMRFGQ 90
            S+F   GLV   ++S+N+FIKN LQ+  D  GE   E PG               ++ G+
Sbjct: 13   SYFKSRGLVRQHLDSFNDFIKNKLQEIIDEQGEIETEIPGL-------------KIKLGK 59

Query: 91   VTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
            + + KP     + GD  ++ P  ARL+N+TY++ + +       T   V ++        
Sbjct: 60   IRVGKPRVREADRGD-REITPMEARLRNLTYAAPIYL-------TMIPVENN-------- 103

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKS------DLCWMKGVEKGDCDFDHGGYFIIKGAEKV 204
                  +  E T + IG +P+M+KS      DL   K VE G+   D GGYFII G EKV
Sbjct: 104  ------IEGEPTEVYIGDLPIMLKSVADPTADLPAEKLVEIGEDPKDPGGYFIINGTEKV 157

Query: 205  FVAQEQICLKRLWVSN-SMGWTVAYKSENKRNRLIVRL-VDMSKFEDIKGGEKVLSVYFL 262
             V QE +   R+ V     G  V + ++   +    R+ + + +  D       + V F 
Sbjct: 158  IVTQEDLATNRVLVDEGKSGSNVTHTAKIISSTAGYRVPITIERLRD-----STIHVSFP 212

Query: 263  ST--EIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNA 320
            +    IP  IL  ALG+ +D++I   + F   D  I N L  S+  A +   +     +A
Sbjct: 213  AVPGRIPFAILMRALGLETDRDITFAVSF---DEEIQNELLPSLEQASSITTQ----EDA 265

Query: 321  LKYVDKLIKGTTFPPG-------ESTEECMNTYLFPSLHGT----KQKARFLGYMVKCLL 369
            L ++     G     G       E  E+ ++ Y  P L  T    K+KA +LGY V  L+
Sbjct: 266  LDFI-----GNRVAIGQKRENRIERAEQVLDKYFLPHLGLTPADRKKKAYYLGYAVSKLI 320

Query: 370  QAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQ------RDLYGDR 423
            +   GRR+ D++D + NKRL+LAG+L     +V      K +   L+      R L  + 
Sbjct: 321  ELQLGRREPDDKDHYANKRLKLAGDLFSSLFRVAFKAFVKDLVYQLEKSKVRGRRLTLNA 380

Query: 424  TVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTR 483
             VRP        I+T  +  A +TG W     RT    G+   L R N L  L  LRR  
Sbjct: 381  LVRP-------DIITERIRHAMATGNWVG--GRT----GVSQLLDRTNWLSMLSHLRRVI 427

Query: 484  QQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQ-LF 542
              +       +AR  H + WG++C   TP+G N GLVKNL +   +S  I + I E+ L+
Sbjct: 428  SSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALLAQISVGINDKIVEKMLY 487

Query: 543  NSG---MEKL-------ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL 592
              G   +E+L        D +SY+     KV ++G  +G   +     +++R KRR  E+
Sbjct: 488  ELGVIPLEELIRKIDEGEDPSSYT--NWSKVILNGRLVGYYPNGEELANKMREKRRAGEI 545

Query: 593  PTQVEIKR--DELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALL 643
              ++ +     +   EV +  D+GR+ RPL+VV++ GK       I+ L+    TF  L+
Sbjct: 546  SDEINVAHIVTDTYDEVYVNSDSGRVRRPLIVVKD-GKPLVTEEDIQRLKKGEITFDTLV 604

Query: 644  DHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANH 703
              G IE +  EEEE+   A            K   + TH E+    +LG++  IIP+  H
Sbjct: 605  KEGKIEFLDAEEEENAYIALE--------PSKVTPEHTHLEIWTPAILGITASIIPYPEH 656

Query: 704  DHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHN 763
            + + R  YQS   + QA+G   +N  +R D+ +H L YPQ+PL +T   D +     G+N
Sbjct: 657  NQSPRNTYQS-AMAKQALGLYASNYQLRTDSRAHFLHYPQKPLVQTRALDII-----GYN 710

Query: 764  HILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQ 823
            +   RP    G+NAI+AV    GYN ED+++MN++S+ERGMFRS   R Y AE    E++
Sbjct: 711  N---RPA---GENAILAVMSFTGYNMEDAIIMNKSSVERGMFRSTFFRLYSAE----EIK 760

Query: 824  VKRRSSDDMVNFGKIQSKIGRV---------DSLDDDGFPFIGANLQSGDIVIGKYA--- 871
                  D      KIQ     V          SLD++G       ++ GD++IGK +   
Sbjct: 761  YPGGQED------KIQLPEPGVRGYKGSDYYKSLDENGIVPPEVEVKGGDVLIGKVSPPR 814

Query: 872  -----------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKF 920
                        +  D S+  +H E+G+V  V+++   +G     V +R +R P LGDKF
Sbjct: 815  FLQEFKELSPEQAKRDTSVITRHGEKGIVDLVLITETSEGNKLVKVRVRDLRIPELGDKF 874

Query: 921  SSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGK 980
            ++ HGQKGV+G L  Q + P+T++GIVPDI++NPH+ PSR T GQ++EA  GK  A  GK
Sbjct: 875  ATRHGQKGVIGMLIPQADMPYTVKGIVPDIILNPHSLPSRMTLGQIMEALAGKYAALSGK 934

Query: 981  GICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQR 1040
             +       ATPF    ++ + ++L   GF   GTE +YDGRTG+ V+  I  G  +YQ+
Sbjct: 935  TVD------ATPFYNTPIEELQKKLLDFGFLPDGTEVVYDGRTGQKVKGRILYGVVYYQK 988

Query: 1041 LIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTL 1100
            L HM  DK+  R  GP+  LTRQP   R R GG++FGEMERDCLI +GAA  + +RL   
Sbjct: 989  LHHMVADKMHGRARGPIQILTRQPTEGRAREGGLRFGEMERDCLIGYGAAMVIKDRLLDN 1048

Query: 1101 SDSYQMHICRKCKNVANVIQRVVGGGRKVRGPY-CRICDSGDDIVKANVPYGAKLLCQEL 1159
            SD   +++C +C          +G   K +  Y C I     ++    + Y  KLL QEL
Sbjct: 1049 SDKTTVYVCEQCG--------YIGWYDKNKNKYVCPIHGDKANLYPVTISYAFKLLLQEL 1100

Query: 1160 FSMGITLKF 1168
             SM I+ + 
Sbjct: 1101 MSMVISPRL 1109


>gi|6606105|gb|AAF19065.1|AF107793_1 DNA-dependent RNA polymerase II RPB140, partial [Emericella nidulans]
          Length = 1009

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 360/1039 (34%), Positives = 524/1039 (50%), Gaps = 114/1039 (10%)

Query: 201  AEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE-----NKRNRLI--VRLVDMSKFEDIKG 252
            +EKV +AQE+     + V   +      Y +E      K +RL+  + L    K +  KG
Sbjct: 1    SEKVLIAQERSAGNTVQVFKKAPPSPTPYVAEIRSAVEKGSRLLSQLSLKLFGKGDSAKG 60

Query: 253  G--EKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADN 309
            G    + S   ++  +IPI I+F ALGV SD++I+N I +   D  +L +L   I +   
Sbjct: 61   GFGPTIRSTLPYIKADIPIVIVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFV 120

Query: 310  KCDEFRKGRNALKYVDKLIKGTTFPPGES----TEECMNTYLFPSLHGTK----QKARFL 361
              D       AL ++ K     +    E       E M   L P +  ++    +KA FL
Sbjct: 121  IQDR----EVALDFIAKRGSSQSSMNHERRVRYAREIMQKELLPHISQSEGSETRKAFFL 176

Query: 362  GYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYG 421
            GYMV  LLQ   GRR  D+RD F  KRL+LAG LL    +V      + + + +QR +  
Sbjct: 177  GYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRVLFTRVTRDLQRYVQRCVES 236

Query: 422  DRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRR 481
            DR +  +   L AS +T GL  A +TG W    K     +G+   L R     TL  LRR
Sbjct: 237  DREIY-LNVGLKASTVTQGLRYALATGNWGEQKKAASAKAGVSQVLSRYTYASTLSHLRR 295

Query: 482  TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQ 540
            T   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   ++  +  EPI + 
Sbjct: 296  TNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPIIDF 355

Query: 541  LFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKR 600
            +    ME L +          KVFV+G W+GV +     V  ++  RRR  +  +V + R
Sbjct: 356  MIQRNMEVLEEFEPQVTPNATKVFVNGVWVGVHRQPSHLVETMQALRRRNMISHEVSLIR 415

Query: 601  DELQSEVRIFMDAGRILRPLLVVENMGK-------------IKSLEG------------- 634
            D  + E +IF DAGR+ RPL VV+N  K             I+ LE              
Sbjct: 416  DIREREFKIFTDAGRVCRPLFVVDNDPKSENCGNLVLNKEHIRKLEEDKELPPDMDPEDR 475

Query: 635  --KNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYL---------------------LKD 671
              + + +  L+  G++E V  EEEE        + L                     ++ 
Sbjct: 476  RERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPEDLEISKQLQAGYALPEEQDPNKRVRS 535

Query: 672  IEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIR 731
            I  ++   +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN   R
Sbjct: 536  ILSQRAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVFLTNFDQR 594

Query: 732  VDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQED 791
            ++T+++ L+YPQ+PL  T   +            L   EL  GQNAIVA+  + GYNQED
Sbjct: 595  METMANILYYPQKPLATTRSME-----------FLRFRELPAGQNAIVAIACYSGYNQED 643

Query: 792  SLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDD 851
            S++MN++S++RG+FRS   R+Y        + V  R    M +   I  + G  D LD+D
Sbjct: 644  SVIMNQSSIDRGLFRSLFYRTYSDSEKMVGLTVVERFEKPMRS-DTIGMRKGTYDKLDED 702

Query: 852  GFPFIGANLQSGDIVIGKYADSGADH---------------SIKLKHTERGMVQKVVLSS 896
            G    G  +   DI+IGK A    D                S  L+ TE G+V +V++++
Sbjct: 703  GIVNPGVRVSGEDIIIGKTAPLAPDAEELGQRTKNHTKLDVSTPLRSTENGIVDQVLVTT 762

Query: 897  NDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHA 956
              D      V +R  + P +GDKF+S HGQKG +G    QE+ PFT +G+ PD++INPHA
Sbjct: 763  TPDSLRSVKVRMRMTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVTPDLIINPHA 822

Query: 957  FPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTE 1016
             PSR T   L+E  L K ++AL      G +  ATPF   +VD+I+  L   G+   G E
Sbjct: 823  IPSRMTIAHLIECQLSK-VSAL-----RGFEGDATPFTDVTVDSISRLLREHGYQSRGFE 876

Query: 1017 RLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKF 1076
             +Y+G TG  + + +F+GPT+YQRL HM +DK+  R  GP   LTRQPV  R R GG++F
Sbjct: 877  VMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRF 936

Query: 1077 GEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRI 1136
            GEMERDC+IAHGA+A L ERLF +SD +++HIC  C  +   I ++  G  +     CR+
Sbjct: 937  GEMERDCMIAHGASAFLKERLFDVSDPFRVHICDDC-GLMTPIAKLKKGLFE-----CRL 990

Query: 1137 CDSGDDIVKANVPYGAKLL 1155
            C++   I + ++PY AKLL
Sbjct: 991  CNNKHRISQVHIPYAAKLL 1009


>gi|284174418|ref|ZP_06388387.1| DNA-directed RNA polymerase subunit B [Sulfolobus solfataricus 98/2]
 gi|384433685|ref|YP_005643043.1| DNA-directed RNA polymerase subunit B [Sulfolobus solfataricus 98/2]
 gi|167744883|pdb|2PMZ|B Chain B, Archaeal Rna Polymerase From Sulfolobus Solfataricus
 gi|167744894|pdb|2PMZ|R Chain R, Archaeal Rna Polymerase From Sulfolobus Solfataricus
 gi|239782145|pdb|3HKZ|B Chain B, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
 gi|239782158|pdb|3HKZ|J Chain J, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
 gi|261601839|gb|ACX91442.1| DNA-directed RNA polymerase subunit B [Sulfolobus solfataricus 98/2]
          Length = 1124

 Score =  529 bits (1362), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 383/1199 (31%), Positives = 588/1199 (49%), Gaps = 157/1199 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVE-PGYDPSKKGEGEWRYASMRFGQ 90
            ++F   GLV   ++SYN+F++N LQ+  D  GE   E PG               +R G+
Sbjct: 16   AYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEIPTEIPGL-------------KVRLGK 62

Query: 91   VTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
            + + KP     + G E ++ P  ARL+N+TY++ + +       T   V ++        
Sbjct: 63   IRIGKPRVRESDRG-EREISPMEARLRNLTYAAPLWL-------TMIPVENN-------- 106

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDL------CWMKGVEKGDCDFDHGGYFIIKGAEKV 204
                  +  E   + IG +P+M+KS +         K +E G+   D GGYFI+ G+E+V
Sbjct: 107  ------IEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERV 160

Query: 205  FVAQEQICLKRLWVS-----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
             V QE +   R+ V      +++  T    S     R+ V +      E +K G   +S 
Sbjct: 161  IVTQEDLAPNRVLVDTGKTGSNITHTAKIISSTAGYRVPVTI------ERLKDGTFHVSF 214

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
              +  +IP  IL  ALG+ +D++IV  +     D  + N LF S+  A +  +      +
Sbjct: 215  PAVPGKIPFVILMRALGILTDRDIVYAVSL---DPEVQNELFPSLEQASSIANV----DD 267

Query: 320  ALKYVDKLIKGTTFPPG-------ESTEECMNTYLFPSLHGT----KQKARFLGYMVKCL 368
            AL ++     G+    G       E  ++ ++ Y  P L  +    K+KA +L Y +  +
Sbjct: 268  ALDFI-----GSRVAIGQKRENRIEKAQQIIDKYFLPHLGTSAEDRKKKAYYLAYAISKV 322

Query: 369  LQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPI 428
            ++ Y GRR+ D++D + NKRL LAG+L     +V      K +   L++     R +  +
Sbjct: 323  IELYLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKSKVRGRKL-AL 381

Query: 429  EYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQY 488
            +  +   I+T  +  A +TG W     RT    G+   L R N L  L  LRR    +  
Sbjct: 382  KALVRPDIVTERIRHALATGNWVG--GRT----GVSQLLDRTNWLSMLSHLRRVISSLAR 435

Query: 489  TGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQ-LFNSGME 547
                 +AR  H + WG++C   TP+G N GLVKNL +   ++  I E I E+ L+  G+ 
Sbjct: 436  GQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALMAQIAVGINERIVEKTLYEMGVV 495

Query: 548  KLADDA-SYSLGGK--------FKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEI 598
             + +     + GG+         KV ++G  IG  +D     +++R +RR+ E+  +V +
Sbjct: 496  PVEEVIRRVTEGGEDQNEYLKWSKVILNGRLIGYYQDGGELANKIRERRRKGEISDEVNV 555

Query: 599  KR--DELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIEL 650
                 +  +EV +  D+GR+ RPL++V N      +  I+ LE    TF  L+  G IE 
Sbjct: 556  GHIVTDFINEVHVNCDSGRVRRPLIIVSNGNPLVTIEDIEKLESGAITFDDLVRQGKIEY 615

Query: 651  VGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVL 710
            +  EEEE+   A     L  D         TH E+    +LG++  IIP+  H+ + R  
Sbjct: 616  LDAEEEENAYVALEPNDLTPD--------HTHLEIWSPAILGITASIIPYPEHNQSPRNT 667

Query: 711  YQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPE 770
            YQS   + QA+G    N  +R DT +H L YPQRPL +T   D +G           RP 
Sbjct: 668  YQS-AMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQTRALDIIGYTN--------RPA 718

Query: 771  LYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSD 830
               G NAI+AV    GYN EDS++MNR+S+ERGM+RS   R Y  E    E++      D
Sbjct: 719  ---GNNAILAVMSFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTE----EVKYPGGQED 771

Query: 831  DMV-NFGKIQSKIGR--VDSLDDDGFPFIGANLQSGDIVIGKYA--------------DS 873
             +V     ++   G+     L+D+G       ++ GD++IGK +               +
Sbjct: 772  KIVMPEAGVRGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKELSPEQA 831

Query: 874  GADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
              D SI  +H E G+V  V+++   +G     V +R +R P +GDKF+S HGQKGV+G L
Sbjct: 832  KRDTSIVTRHGEMGIVDLVLITETAEGNKLVKVRVRDLRIPTIGDKFASRHGQKGVIGML 891

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
              Q + P+T++G+VPDI++NPHA PSR T GQ++E   GK  AAL   I       ATPF
Sbjct: 892  IPQVDMPYTVKGVVPDIILNPHALPSRMTLGQIMEGIAGK-YAALSGNIVD-----ATPF 945

Query: 994  ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
                ++ +  ++ R G+    TE +YDGRTG+ ++S I+ G  +YQ+L HM  DK+  R 
Sbjct: 946  YKTPIEQLQNEILRYGYLPDATEVVYDGRTGQKIKSRIYFGVVYYQKLHHMVADKLHARA 1005

Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
             GPV  LTRQP   R R GG++FGEMERDCLI  G A  L +RL   SD   +++C +C 
Sbjct: 1006 RGPVQILTRQPTEGRAREGGLRFGEMERDCLIGFGTAMLLKDRLLDNSDRTMIYVCDQCG 1065

Query: 1114 NVANVIQRVVGGGRKVRGPY-CRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                     +G   K +  Y C I     ++    V Y  KLL QEL SM I+ +   E
Sbjct: 1066 --------YIGWYDKNKNKYVCPIHGDKSNLFPVTVSYAFKLLIQELMSMIISPRLVLE 1116


>gi|327311708|ref|YP_004338605.1| DNA-directed RNA polymerase subunit beta [Thermoproteus uzoniensis
            768-20]
 gi|326948187|gb|AEA13293.1| DNA-directed RNA polymerase subunit beta [Thermoproteus uzoniensis
            768-20]
          Length = 1127

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 378/1186 (31%), Positives = 581/1186 (48%), Gaps = 142/1186 (11%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F  + G+V HQI ++N+FI   L K  +  G              E E +   +   +V
Sbjct: 30   AFIRDRGIVDHQIRAFNDFIDRKLPKIIEEMGVV------------ETEIKGLKVAIERV 77

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             +  P     +G  E  ++P  ARL+N TYS+ M + V                     Y
Sbjct: 78   EIGWPRIKEPDGS-ETVIYPMEARLRNATYSAPMYLTVTL-------------------Y 117

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCD------FDHGGYFIIKGAEKVF 205
            +  E  + ET  I  G +P+MVKS  C +  ++  +         D GGYFII G+E+V 
Sbjct: 118  VDDEPYATET--IYAGELPIMVKSKKCNLTRLKPEEYPKRFEDPEDPGGYFIINGSERVV 175

Query: 206  VAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTE 265
            ++QE +   R         T+ Y ++        R     ++   K G   +++  +   
Sbjct: 176  ISQEDLVTDRPIYDVGDKPTIRYLAKVISTGPGYRATMTVEYH--KDGVIYVTLSAIPVR 233

Query: 266  IPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVD 325
            IP  +   A+G+ SD++IV  +    +D  I   L  S+  A  +    R   +AL +V 
Sbjct: 234  IPFTVYMRAMGLESDQDIVLAV---SDDPDIQKELLPSLL-AGQEIAATRD--DALDFVG 287

Query: 326  -KLIKGTTFPPG-ESTEECMNTYLFPSLHGTK-----------QKARFLGYMVKCLLQAY 372
             K+  G   P   E   + ++ Y  P+L+  K           +KA  LG +VK L++  
Sbjct: 288  GKIAVGQPRPIRIERALQILDKYFLPNLNPQKPDEKAMEEARIKKALLLGQVVKGLIEMQ 347

Query: 373  SGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYL 432
             GRRK D++D   NKR+ L  +LL +  +  +    + +   L++  Y    +  ++  +
Sbjct: 348  LGRRKPDDKDHVANKRVRLVNDLLAQLFRTVMKQFLQELKNQLEK-YYARGKIPHLQTIV 406

Query: 433  DASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKV 492
               I+T  + +A +TG W          +G+   L R N L TL  LRR    +  T   
Sbjct: 407  RPDIITERVKQALATGNW------VGGKTGVSQILDRTNYLSTLSYLRRVVSSLSRTQPH 460

Query: 493  GDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFNS-GMEKLAD 551
             +AR  HP+ WG++C + TP+G+N GLVKNL +   ++  + E + E+  N  G+  + +
Sbjct: 461  FEARDLHPTQWGRLCAVETPEGQNVGLVKNLALLAEITIGVDEAVVEKTLNELGVVPVLE 520

Query: 552  DASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFM 611
                 L G  +V+++G  IG+ ++    V  LR+ RR+ ++  +V +    L   V +  
Sbjct: 521  ARRGGLEGA-EVYLNGRLIGIHQNPEELVKTLRKMRRQGKISDEVNVAH--LGDAVYVNC 577

Query: 612  DAGRILRPLLVVENMGKIK-------SLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWG 664
            D GRI RPLLV+E+ GK+K        L     T+  L+  G++E +  +EEE+   A G
Sbjct: 578  DGGRIRRPLLVIED-GKLKLTKEHVQKLASGELTWNDLVKMGVVEYLDADEEENAYIAVG 636

Query: 665  IKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFP 724
             +  +         K+TH E+  S +LG    IIP+  H+ + R  Y++   + Q++G P
Sbjct: 637  PEPDMS--------KYTHMEIVPSSILGAIASIIPYLEHNQSPRNQYEA-AMAKQSLGLP 687

Query: 725  TTNPSIRVDTLSHQLFYPQRPLFRTMISDCLG---KPGYGHNHILPRPELYNGQNAIVAV 781
              N   ++D+  H L+YP+RP+  T   + +G   KP               GQNA+VA+
Sbjct: 688  QANFMYKLDSRGHMLYYPERPIVTTRGLELIGYSRKPA--------------GQNAVVAL 733

Query: 782  NVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSK 841
              + GYN ED+++MN++S++RG+FRS   R+Y+ E      Q      +D +      ++
Sbjct: 734  LTYTGYNIEDAVIMNKSSVDRGLFRSNFYRTYETE-----EQKYPGGEEDRIEVPDSSAR 788

Query: 842  IGR----VDSLDDDGFPFIGANLQSGDIVIGKYA--------------DSGADHSIKLKH 883
              R       LD+DG       +  G+++IGK A                  D SI ++ 
Sbjct: 789  GYRGPEAYSHLDEDGIAPPEVYVTGGEVIIGKTAPPRFYMTLETEKILKERRDASIPVRR 848

Query: 884  TERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTI 943
             ERG+V +VV++ + +G     V LR++R P LGDKF+S HGQKGV+G L  QE+ PFT 
Sbjct: 849  GERGIVDRVVITESPEGNKLVKVRLRELRVPELGDKFASRHGQKGVIGMLLRQEDMPFTE 908

Query: 944  QGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITE 1003
             GIVPDI++NPHA PSR T GQLLE+  GK  A  G+ I       ATPF   +   + E
Sbjct: 909  DGIVPDIIVNPHAMPSRMTVGQLLESIAGKAGALTGQLID------ATPFEGVTEGELRE 962

Query: 1004 QLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQ 1063
             L + GF   G E +Y G TGE + + IFIG  +YQ+L HM  DK+  R+ GPV  LTRQ
Sbjct: 963  LLMKLGFRWDGKEVMYSGITGEKLVADIFIGIVYYQKLHHMVADKIHARSRGPVQILTRQ 1022

Query: 1064 PVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVV 1123
            P   R R GG++ GEMERD LIAHGA+A L+ER+   SD Y M++C  C   A +     
Sbjct: 1023 PTEGRSREGGLRLGEMERDVLIAHGASALLYERMVESSDKYTMYVCELCGLPAYL----- 1077

Query: 1124 GGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFD 1169
                K   P C I        K  VPY  KLL QEL ++GI  K +
Sbjct: 1078 --DAKTNRPKCPIHGESGQFAKVVVPYAFKLLLQELIALGIYPKLE 1121


>gi|330833900|ref|YP_004408628.1| DNA-directed RNA polymerase subunit B [Metallosphaera cuprina Ar-4]
 gi|329566039|gb|AEB94144.1| DNA-directed RNA polymerase subunit B [Metallosphaera cuprina Ar-4]
          Length = 1124

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 388/1203 (32%), Positives = 589/1203 (48%), Gaps = 171/1203 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVE-PGYDPSKKGEGEWRYASMRFGQ 90
            ++F   GLV   ++S+N+FIKN LQ+  D   E   E PG               +R G+
Sbjct: 13   AYFKSRGLVRQHLDSFNDFIKNKLQEIIDEQAEITTEIPGL-------------KIRLGK 59

Query: 91   VTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
            + + KP     + GD+ ++ P  ARL+N+TY++ + +++                T  E 
Sbjct: 60   IRVGKPRVREADKGDK-EITPMEARLRNLTYAAPVYLEM----------------TPIEN 102

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKS------DLCWMKGVEKGDCDFDHGGYFIIKGAEKV 204
             I+ ++     T + IG IP+M+KS      +    K VE G+   D GGYFI+ G+E+V
Sbjct: 103  NIEGDL-----TEVYIGDIPIMLKSIADPTSEFTSEKLVEIGEDPKDPGGYFIVNGSERV 157

Query: 205  FVAQEQICLKRLWVS-----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
             V QE +   R+        +++  T    S     R+ + +      E +K     +S 
Sbjct: 158  IVTQEDLATNRVLTDVGKTGSNITHTAKIISSTSGYRVPITI------EKLKDSTIHVSF 211

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
              +  +IP  IL  ALG+ +D+EI   +     D  I N L  SI  A +   +     +
Sbjct: 212  PAVPGKIPFAILMRALGIETDEEITLAVSL---DPDIQNELLPSIEQASSIISK----DD 264

Query: 320  ALKYVDKLIKGTTFPPGES-------TEECMNTYLFPSLHGTKQ-----KARFLGYMVKC 367
            AL ++     G     G+         E+ ++ Y  P + GT       KA +L + V  
Sbjct: 265  ALDFI-----GNRIAIGQKREMRIQKAEQVLDKYFLPHI-GTNASDRTAKAYYLAFAVSK 318

Query: 368  LLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRP 427
            L++ Y GRR+ D++D + NKRL+LAG+L     +V      K +   L++     R +  
Sbjct: 319  LIELYLGRREPDDKDHYANKRLKLAGDLFASLFRVAFKAFVKDLVFQLEKSKVRGRRL-A 377

Query: 428  IEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQ 487
            +   +   I++  +  A +TG W     RT    G+   L R N L  L  LRR    + 
Sbjct: 378  VNALVRQDIISERIRHALATGNWVG--GRT----GVSQLLDRTNWLSMLSHLRRVVSSLA 431

Query: 488  YTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQL-FNSGM 546
                  +AR  H + WG++C   TP+G N GLVKNL + G +S  + E   E+L +N G+
Sbjct: 432  RGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALLGQISVGVNEKSVERLLYNLGV 491

Query: 547  --------------EKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL 592
                          EK  D  ++S     KV ++G  IG   +      ++R KRR  EL
Sbjct: 492  IPIEEVIKKYRSQEEKSEDYENWS-----KVILNGRLIGYYPNGSELAEKIREKRREGEL 546

Query: 593  PTQVEIK--RDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALL 643
              +V +   R E  +EV I  D+GR+ RPL+VV + GK       I++L+    TF  L+
Sbjct: 547  SDEVNVNYTRTETYNEVYINSDSGRVRRPLIVVRH-GKPLVTKEDIENLKKGKITFDTLI 605

Query: 644  DHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANH 703
              G IE +  EEEE+   A   K + KD         TH E+    +LG++  IIP+  H
Sbjct: 606  REGKIEFLDAEEEENAYIALEPKDVTKD--------HTHLEIWTPAILGITASIIPYPEH 657

Query: 704  DHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHN 763
            + + R  YQS   + QA+G    N  IR DT +H L YPQ+P+ +T   + +G       
Sbjct: 658  NQSPRNTYQSA-MAKQALGLYAANYQIRTDTRAHLLHYPQKPIVQTRALEAIG------- 709

Query: 764  HILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQ 823
                RP    G NAI A+  + GYN ED+++MN++S+ERGMFRS   R Y AE    E++
Sbjct: 710  -YTERPA---GNNAIFALMSYTGYNMEDAVIMNKSSIERGMFRSTFFRLYSAE----EIK 761

Query: 824  VKRRSSDD-MVNFGKIQSKIGR--VDSLDDDGFPFIGANLQSGDIVIGKYA--------- 871
                  D+ ++    ++   G+     L+ +G      +++ GD++IGK +         
Sbjct: 762  YPGGQEDEILLPEPGVRGYKGKDYYRLLESNGIVSPEVDVKGGDVLIGKVSPPRFLQEFK 821

Query: 872  -----DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQ 926
                  +  D SI  +H ERG V  V+++   +G     V +R +R P +GDKF++ HGQ
Sbjct: 822  ELSPDQAKRDTSIITRHGERGTVDLVLVTETSEGNKLVKVRVRDLRIPEIGDKFATRHGQ 881

Query: 927  KGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGL 986
            KGV+G +  Q + P+T  G+ PDI++NPHA PSR T GQ++EA  GK +AA G+ I    
Sbjct: 882  KGVVGMIIPQVDMPYTTSGLTPDIILNPHALPSRMTVGQIMEALSGKFVAATGESID--- 938

Query: 987  KRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSE 1046
               ATPF    ++ I ++L  +G+   G+E +YDGRTGE ++  I  G  +YQ+L HM  
Sbjct: 939  ---ATPFYNIPIEEIQKKLLNSGYLGDGSEVVYDGRTGEKLKGRILFGIVYYQKLHHMVA 995

Query: 1047 DKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQM 1106
            DK+  R  GPV  LTRQP   R R GG++FGEMERDCLI +GAA  + +RL   SD   +
Sbjct: 996  DKMHGRGRGPVQILTRQPTEGRAREGGLRFGEMERDCLIGYGAAMLIKDRLLDNSDKATV 1055

Query: 1107 HICRKCKNVANVIQRVVGGGRKVRGPY-CRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
            ++C +C          VG   + +  Y C I      +    V Y  KLL QEL SM I 
Sbjct: 1056 YVCEQCG--------YVGWYDRSKNKYICPIHGDKSTLYPVAVSYAFKLLLQELMSMVIA 1107

Query: 1166 LKF 1168
             K 
Sbjct: 1108 PKL 1110


>gi|341581876|ref|YP_004762368.1| DNA-directed RNA polymerase subunit B [Thermococcus sp. 4557]
 gi|340809534|gb|AEK72691.1| DNA-directed RNA polymerase subunit B [Thermococcus sp. 4557]
          Length = 1122

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 395/1198 (32%), Positives = 601/1198 (50%), Gaps = 172/1198 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +++ E GLV   ++SYN FI++G+Q+    FG      G  P            ++FG++
Sbjct: 22   AYWKERGLVRQHLDSYNAFIESGMQRVIYEFG------GLKPDIPD------FEVKFGKI 69

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             L +P F     G    ++P  AR++N+TYS+ + +++   +             G EQ 
Sbjct: 70   RLGEPEFQEAQ-GQRKPLYPMDARIRNLTYSAPLYLELIPVI------------KGIEQ- 115

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
                    E   + IG +P+M+KS  C + G      ++ G+   D GGYFII G+E+V 
Sbjct: 116  --------EAVEVRIGELPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFIINGSERVI 167

Query: 206  VAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVD-------MSKFEDIKGGEKVLS 258
            V+ E +   +  V          + + ++NR+I ++         +   E  K G  +L 
Sbjct: 168  VSIEDLAPNKTLV----------ERDERQNRIIAKVFSYRHGYRALITVERRKDG--ILY 215

Query: 259  VYFLSTEIPIWILFF--ALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRK 316
            V   +   P+  ++   ALG+ SDKEIV  +    +D  I  +LF ++ DA +  ++   
Sbjct: 216  VNIPNVPRPVKFVYVMRALGLLSDKEIVEAV---SDDPRIQQVLFDNLEDASDVMNQ--- 269

Query: 317  GRNALKYVDKLIKGTTFP--PGE----STEECMNTYLFPSL----HGTKQKARFLGYMVK 366
              +AL Y+ KL    + P  P E      E  ++  L P +       K KA +LG M  
Sbjct: 270  -EDALDYIGKL----SLPGQPKEYRLRRAEHIIDNNLLPHMGVEPERRKAKAYYLGMMAL 324

Query: 367  CLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARK----RMAKALQRDLYGD 422
             +L+   G R  D++D + NKRL+LAG+LL    +V      K    +M K  QR   G+
Sbjct: 325  KVLELSLGLRGEDDKDHYANKRLKLAGDLLRDLFRVAFGQLVKDMQYQMTKTYQRK--GE 382

Query: 423  R-TVRPIEYYLDASI----LTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLV 477
            R T   I+ ++  SI    L+  +  A +TGAW  P  RT    G+   L R N + TL 
Sbjct: 383  RYTFENIQRFVRNSIRPDVLSERIEHALATGAW--PGGRT----GVSQLLDRTNYMSTLS 436

Query: 478  DLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPI 537
             LRR    +       +AR  H +HWG+IC   TP+G NCGLVKNL +   ++T I E  
Sbjct: 437  HLRRVTSPLSRDQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLSLMSQITTGIPEEE 496

Query: 538  FEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELP--TQ 595
              +  N  +  ++ +        ++++++G  IG  +D  S V  +R  RR  ++     
Sbjct: 497  VREYLNK-LGVVSIEERRPSPELWRLYLNGVLIGTIEDGESLVRRIRSDRRSGKISDVIN 555

Query: 596  VEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIK-------SLEGKNYTFQALLDHGII 648
            V + +DE   EV +  D GR+ RPL++VEN GK K       +++    T+  L+  GII
Sbjct: 556  VAMYQDEEVREVYVNSDDGRVRRPLIIVEN-GKPKLTKEHVDAIKNGALTWNDLVKMGII 614

Query: 649  ELVGTEEEEDCCTA---WGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDH 705
            E +  EEEE+   A   W +             + TH EL  + +LG+   ++P+  H+ 
Sbjct: 615  EYLDAEEEENAYVATWPWEVTE-----------EHTHLELMPAAILGIPASLVPYPEHNA 663

Query: 706  ARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHI 765
            A R  Y +   + Q++GF   N  IRVDT  H + YPQ PL  + I   +G         
Sbjct: 664  APRNTYGA-GMAKQSLGFGAANFRIRVDTRGHLMHYPQVPLVNSRIMKAVG--------F 714

Query: 766  LPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEM--Q 823
              RP    GQN +VAV  + GYN ED+++MN+AS+ERG+ RS   R+Y+AE + + +  Q
Sbjct: 715  EERP---AGQNFVVAVLSYGGYNMEDAIIMNKASIERGLGRSTFFRTYEAE-EKRYLGGQ 770

Query: 824  VKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA-------DSGA- 875
              R    D    G +  K  R   LD+DG  F  + +   D+++G+ +        SG  
Sbjct: 771  TDRFEVPDPTIQGYLGEKYYR--HLDEDGIIFPESKVTGKDVLVGRTSPPRFLEEQSGLG 828

Query: 876  --------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQK 927
                    + S+ ++ +ERG+V KV+++   DG     V+ R +R P  GDKF+S HGQK
Sbjct: 829  GIILQERRETSVTVRPSERGIVDKVIITETGDGTKLVKVTTRDLRIPEFGDKFASRHGQK 888

Query: 928  GVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLK 987
            GV+G +  QE+ P+T  GIVPD+++NPH  PSR T GQL+EA  GK +AAL     +G +
Sbjct: 889  GVVGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGK-VAAL-----TGRR 942

Query: 988  RYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSED 1047
               T F     + + ++L   GF   G E +YDG TG  + + IF+G  +YQRL HM  D
Sbjct: 943  VDGTAFIGEPEEKLRKELEELGFKHSGREVMYDGITGRRLEADIFVGVIYYQRLHHMVAD 1002

Query: 1048 KVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMH 1107
            K+  R+ GPV  LT+QP   R R GG++FGEMERD LI HGAA  L ERL   SD  ++ 
Sbjct: 1003 KMHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLIGHGAAMLLIERLLEESDKTEVW 1062

Query: 1108 ICRKCKNVANVIQRVVGGGRKVRGP-YCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
            +C  C ++A   +R        RG  YC +C   + I K  + Y  KLL  EL +MGI
Sbjct: 1063 VCESCGHLALEDKR--------RGKVYCPVCGEEEKISKVEMSYAFKLLLDELKAMGI 1112


>gi|340500807|gb|EGR27654.1| RNA polymerase ii second largest subunit, putative [Ichthyophthirius
            multifiliis]
          Length = 1194

 Score =  525 bits (1353), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 385/1225 (31%), Positives = 603/1225 (49%), Gaps = 144/1225 (11%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYAS 85
            C     S+F E  L + QINSY+ FI++  Q   +   +  ++P    S K   E  + +
Sbjct: 16   CWNIIDSYFQENNLCTQQINSYDNFIQSIPQIMEEQ--KIRIKPQNKYSLKQNNELDFEN 73

Query: 86   MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKF- 144
             ++  V+ +KP            +FP  AR+ ++ YS  +K+ +        ++  + F 
Sbjct: 74   TQYI-VSFEKPQ---KAPSYNQRIFPTQARISDLDYSLEIKIPI--------KLVKETFN 121

Query: 145  -KTGREQYIQKEVLSDETTNII-IGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYF 196
             +TG+   +  + L D   N+I +  IP MV+S  C + G      ++ G+C  D GGYF
Sbjct: 122  PETGK---LDVKNLVDPNKNVITLAHIPAMVQSKQCSLHGLSLQQRIQTGECKHDQGGYF 178

Query: 197  IIKGAEKVFVAQEQICLKRLWV----SNSMGWTVAYKS-----ENKRNRLIVRLVDMSKF 247
            IIKG EKV +AQE++    ++V     + + W    +S        +++ I+++    K 
Sbjct: 179  IIKGQEKVIIAQERMAYNFIYVFKQNDDRIPWIAEIRSICGKITGIQSKFIIKM--KKKN 236

Query: 248  EDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLI--DFTC-EDCSILNILFASI 304
            E+I   +      ++S +IP++ILF AL +  D++I+  I  D    E+ + + +L    
Sbjct: 237  EEI---QLFWRSKYISDDIPMFILFKALNIIKDRQIMEYIFHDIKSRENQTQMELL---- 289

Query: 305  HDADNKCDEFRKGRNALKYVDKLIKGTTFPPGE-----STEECMNTYLFP-------SLH 352
             D+   C + +   +AL Y+   +  ++   G+     + +  +N YL P       SLH
Sbjct: 290  RDSLLLCSKVKSVNSALNYIGLRVLASSKNIGKQDAVKAAKNILNYYLLPHIGQDEKSLH 349

Query: 353  GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMA 412
               QKA F+GYM+K LL A + +   D+RD +  KR++++G LL +  K  ++   KR  
Sbjct: 350  ---QKAFFVGYMIKKLLNAANNKCIEDDRDHYGKKRMDISGNLLSQLFKERVSQFIKRGK 406

Query: 413  KALQ-------RDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVA 465
              LQ       RD     +++      D  I+++ L  A +TG W          +G+  
Sbjct: 407  MMLQEKFSKIFRDSNACFSLK--NDIFDHKIISDALKAAIATGNWGVTADGEVARTGVSQ 464

Query: 466  NLGRANPL-QTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLG 524
             L R      TL ++RR     +   K    R  H SH+G IC   TP+G+N G++KN+ 
Sbjct: 465  QLKRDTCFFATLSNMRRVTAPQRQISKQTKPRQLHNSHYGMICPAETPEGQNIGMIKNMA 524

Query: 525  VTGLVSTSILEPIFEQL--FNSGMEKLADDASYS---LGGKFKVFVDGDWIGVCKDSLSF 579
                VS  + E    Q+  F     ++ D    +   + G  KVF +G+W G CKD    
Sbjct: 525  FMTQVSLGLQERDNLQILEFLESAVQVFDITQINVEEIAGMNKVFFNGNWFGFCKDPEDL 584

Query: 580  VSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIK--------S 631
            +   ++ RR+K+    + + RD +  E+RI+ D+GR +RPL VVEN    K         
Sbjct: 585  IELFKKYRRKKQEFKDISVVRDVINKEIRIYTDSGRCMRPLFVVENARNRKLFINKENLK 644

Query: 632  LEGKNYT---FQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMS 688
            L  KN     F     +G IE +  EEEE       I       + ++ + FTHCE+  S
Sbjct: 645  LINKNVQEKRFSNYCLNGFIEYLDVEEEEISMIGIDINDFYFPPKSRQNLPFTHCEIHPS 704

Query: 689  FLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFR 748
             +LG+   IIPF +H+   R   QS     Q+IG   TN   R D+L+H L+YPQ PL  
Sbjct: 705  MILGVCASIIPFCHHNQGPRNTLQS-AMGKQSIGLNATNFFFRYDSLAHVLYYPQVPL-- 761

Query: 749  TMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSE 808
                    +  Y ++ +    E+  G NAIVA+    G+NQEDSL++N+++++RG+FRS 
Sbjct: 762  -----TFSRSNYYNSSV----EMPFGINAIVAIACFTGFNQEDSLIVNQSAIDRGLFRSS 812

Query: 809  HIRSYKAEVDNKEM-QVKRRSSDDMVNFGK--IQSKIGRVDSLDDDGFPFIGANLQSGDI 865
              R+YK    N+EM +   R +  + ++ K  IQ     +  LD DG    G  + S D+
Sbjct: 813  FYRTYKTAQRNEEMGKQPIRETICIPDYKKTFIQQHSSFL-KLDYDGIIPPGTQVISQDV 871

Query: 866  VIGKYAD-----------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSL 908
            ++GK                       D S+  K +E G V  V+L+ + DG     V +
Sbjct: 872  LVGKVVQIIEKEGQDIDKIEQLQKEYKDISLVSKRSEIGYVDNVILTEDKDGFYLVKVKI 931

Query: 909  RQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLE 968
            R  R P +GDKF+S HGQKG +G     E+ PF I+GI  +++INPH  PSR T G ++E
Sbjct: 932  RCSRIPQVGDKFASRHGQKGTVGMTIRGEDMPFNIEGIQAELIINPHCIPSRMTIGHMIE 991

Query: 969  AALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVR 1028
              L   +A L  G        ATPF   + +   ++L   G+ K+G E LYD  TG  + 
Sbjct: 992  G-LHSKLACLKGGFGD-----ATPFQEGNFEKTAKELQEKGYQKYGNEILYDPYTGNKIN 1045

Query: 1029 SLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG 1088
            + I+  PT+YQRL H+ EDK+  R+ GPV  +TRQP   R + GG++FGEMERDC+I+HG
Sbjct: 1046 TPIYFSPTYYQRLRHLVEDKMYARSRGPVVAITRQPTHGRGKGGGLRFGEMERDCIISHG 1105

Query: 1089 AAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPY--CRIC------DSG 1140
             +  L ER F++SDSY++HIC +C  +A            +   Y  C+ C         
Sbjct: 1106 TSKFLQERTFSVSDSYRVHICSECGLIAVA---------DLENEYYVCKRCLDLDKKKDK 1156

Query: 1141 DDIVKANVPYGAKLLCQELFSMGIT 1165
              IV+  +PY AK + QEL SM I 
Sbjct: 1157 AKIVQIMMPYAAKQMIQELISMHIV 1181


>gi|390960609|ref|YP_006424443.1| DNA-directed RNA polymerase subunit B [Thermococcus sp. CL1]
 gi|390518917|gb|AFL94649.1| DNA-directed RNA polymerase subunit B [Thermococcus sp. CL1]
          Length = 1122

 Score =  525 bits (1353), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 396/1200 (33%), Positives = 601/1200 (50%), Gaps = 176/1200 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +++ E GLV   ++SYN FI +G+Q+  D FG      G  P            ++FG++
Sbjct: 22   AYWKERGLVRQHLDSYNAFIDHGMQQVIDEFG------GLKPDIPD------FEVKFGKI 69

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             L +P F     G    ++P  AR++N+TYS+ + +++   +             G EQ 
Sbjct: 70   RLGEPEFQEAQ-GQRKPLYPMDARIRNLTYSAPLYLELIPVI------------KGIEQ- 115

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
                    E   + IG +P+M+KS  C + G      ++ G+   D GGYFII G+E+V 
Sbjct: 116  --------EPVEVRIGELPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFIINGSERVI 167

Query: 206  VAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVD-------MSKFEDIKGGEKVLS 258
            V+ E +   +  V          + + ++NR+I ++         +   E  K G  +L 
Sbjct: 168  VSIEDLAPNKTLV----------ERDERQNRIIAKVFSYRHGYRALITVERRKDG--ILY 215

Query: 259  VYFLSTEIPIWILFF--ALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRK 316
            V   +   P+  ++   ALG+ SDKEIV  +    +D  I  +LF ++ DA +   +   
Sbjct: 216  VNIPNVPRPVKFVYVMRALGLLSDKEIVEAV---SDDPRIQQVLFDNLEDASDITTQ--- 269

Query: 317  GRNALKYVDKLIKGTTFP--PGE----STEECMNTYLFPSL----HGTKQKARFLGYMVK 366
               AL Y+ KL    + P  P E      E  ++  L P +       + KA +LG M  
Sbjct: 270  -EEALDYIGKL----SLPGQPREYRLRRAEHIIDNNLLPHMGVEPERRRAKAYYLGMMAL 324

Query: 367  CLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARK----RMAKALQRDLYGD 422
             +L+   G R  D++D + NKRL+LAG+LL    +V      K    +M K  QR   G+
Sbjct: 325  KVLELSLGLRGEDDKDHYANKRLKLAGDLLRDLFRVAFGQLVKDMQYQMTKTYQRK--GE 382

Query: 423  R-TVRPIEYYLDASI----LTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLV 477
            R T   I+ ++  SI    L+  +  A +TGAW  P  RT    G+   L R N + TL 
Sbjct: 383  RYTFENIQRFVRNSIRPDVLSERIEHALATGAW--PGGRT----GVSQLLDRTNYMSTLS 436

Query: 478  DLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-P 536
             LRR    +       +AR  H +HWG+IC   TP+G NCGLVKNL +   ++T I E  
Sbjct: 437  HLRRVTSPLSRDQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTGIPEKE 496

Query: 537  IFEQLFNSGMEKLAD-DASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELP-- 593
            + E L   G+  + +   + SL   ++++++G  IG  +D  S V  +R  RR   +   
Sbjct: 497  VREYLSKLGVVPIEERRPNPSL---WRIYLNGVLIGTIEDGESLVKRIRSDRRSGRISDV 553

Query: 594  TQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHG 646
              V + +DE   E+ +  D GR+ RPL++VEN GK       ++ ++    T+  L+  G
Sbjct: 554  INVALYQDEDVKEIYVNSDDGRVRRPLIIVEN-GKPRLTREHVEGIKTGQLTWSDLIKMG 612

Query: 647  IIELVGTEEEEDCCTA---WGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANH 703
            IIE +  EEEE+   A   W +             + TH EL  + +LG+   ++P+  H
Sbjct: 613  IIEYLDAEEEENALVATWPWEVTE-----------EHTHLELMPAAILGIPASLVPYPEH 661

Query: 704  DHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHN 763
            + A R  Y +   + Q++GF   N  IRVDT  H + YPQ PL  + I   +G       
Sbjct: 662  NAAPRNTYGA-GMAKQSLGFGAANFRIRVDTRGHLMHYPQVPLVNSRIMKAVG------- 713

Query: 764  HILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEM- 822
                RP    GQN +VAV  + GYN ED+++MN+AS+ERG+ RS   R+Y+AE + + + 
Sbjct: 714  -FEERP---AGQNFVVAVLSYSGYNMEDAVIMNKASIERGLARSTFFRTYEAE-EKRYLG 768

Query: 823  -QVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA-------DSG 874
             Q  R    D    G +  K  R   LD+DG  F  + +   D+++G+ +        SG
Sbjct: 769  GQTDRFEVPDPTIQGYLGEKYYR--HLDEDGIIFPESKVSGKDVLVGRTSPPRFLEEQSG 826

Query: 875  A---------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHG 925
                      + S+ ++ +ERG+V KV+++   DG     ++ R +R P LGDKF+S HG
Sbjct: 827  LGGIILQERRETSVTVRPSERGIVDKVIITETGDGTKLVKITTRDLRIPELGDKFASRHG 886

Query: 926  QKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSG 985
            QKGV+G +  QE+ P+T  GIVPD+++NPH  PSR T GQL+EA  GK +AAL      G
Sbjct: 887  QKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGK-VAAL-----KG 940

Query: 986  LKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMS 1045
             +   T F     + + ++L   GF   G E +YDG TG  + + IF+G  +YQRL HM 
Sbjct: 941  RRVDGTAFIGEPEEKLRKELEELGFKHSGREIMYDGITGRRLEADIFVGVIYYQRLHHMV 1000

Query: 1046 EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQ 1105
             DK+  R+ GPV  LT+QP   R R GG++FGEMERD LI HGAA  L ERL   SD  +
Sbjct: 1001 ADKMHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLIGHGAAMLLIERLLEESDKTE 1060

Query: 1106 MHICRKCKNVANVIQRVVGGGRKVRGP-YCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
            + +C  C ++A   +R        RG  YC +C   + I K  + Y  KLL  EL +M I
Sbjct: 1061 VWVCESCGHLALEDKR--------RGKVYCPVCGEEERISKVEMSYAFKLLLDELKAMVI 1112


>gi|119719204|ref|YP_919699.1| DNA-directed RNA polymerase subunit B [Thermofilum pendens Hrk 5]
 gi|119524324|gb|ABL77696.1| DNA-directed RNA polymerase, subunit B' [Thermofilum pendens Hrk 5]
          Length = 1130

 Score =  525 bits (1353), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 376/1200 (31%), Positives = 588/1200 (49%), Gaps = 161/1200 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            ++ +E GLV   ++S+N F++ GLQ+  D  G   VE         +G      ++FG++
Sbjct: 21   AYVDELGLVRQHLDSFNAFLERGLQEIVDEVGGIKVE--------SQG----VEIKFGKI 68

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             + +P+F   +G D   + P  ARL+N+TY++ + + +   V  ++R             
Sbjct: 69   EVGQPTFREADGSD-LALTPMIARLRNITYAAPLYLTMTLYVDGEER------------- 114

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG-------VEKGDCDFDHGGYFIIKGAEKV 204
                     T ++ IG +P+MVKS  C + G       V+ G+  +D GGYFI+ G+E+V
Sbjct: 115  --------RTESVYIGSLPIMVKSKKCVLYGLKSEDEIVKYGEDPYDPGGYFIVNGSERV 166

Query: 205  FVAQEQICLKRLWV-----SNSMGWT--VAYKSENKRNRLIVRLVDMSKFEDIKGGEKVL 257
             V QE + + R+ V     S S+  T  V   +  +R+ L V        E  K G    
Sbjct: 167  IVMQEDLSVNRVLVDYGGASGSVTHTAKVFSVAAGQRSPLTV--------ERTKDGMIYA 218

Query: 258  SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG 317
            S     ++IP+ +L  ALG+ +D+EI     +   +  I+   F  +    +K     + 
Sbjct: 219  SFPACPSKIPVVVLMRALGLKTDQEIA----YAIGNDPIIQQEFLPVLMEQSKIAATPE- 273

Query: 318  RNALKYVDKLIKGTTFPPG-------ESTEECMNTYLFPSL----HGTKQKARFLGYMVK 366
              AL Y+     G+   PG       E  +  ++  L P +         KA F+G MV 
Sbjct: 274  -EALDYI-----GSRVSPGQPRNVRIERAQAVLDENLLPHIGRGPAARISKAFFVGQMVS 327

Query: 367  CLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR 426
             LL+   G R  D++D   NKR+  AGEL+ +  +       K M  +++R     R + 
Sbjct: 328  RLLELKLGMRGPDDKDHLANKRIRQAGELIAQVFRSAFRQLVKEMTYSIERHTSKTRDIN 387

Query: 427  PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
             +   +   I+T  L+ A +TG W     RT    G+   L R N L T+  LRR    +
Sbjct: 388  LVSI-VRPDIITERLNHALATGNWVG--GRT----GVSQILDRTNYLSTISHLRRVVSPL 440

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEP-IFEQLFNS- 544
              T    +AR  HP+ WG++C + +P+G+NCGLVK+L +   +S    E  +++ L    
Sbjct: 441  SRTQPHFEARELHPTQWGRLCPVESPEGQNCGLVKHLALLATLSNGTDEKQVYDLLVGRL 500

Query: 545  GMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQ 604
            G+  +      ++ G  +V+++G  IG  +D       LR+ RR   +  +V +     +
Sbjct: 501  GVVPVEKTVGKNISGA-RVYLNGRLIGYVEDGKGLAETLRKLRREGRISHEVNVAFYSHE 559

Query: 605  ----------SEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGII 648
                       EV +  DAGRI RPL+VVEN         ++ L    +T+  L+++GI+
Sbjct: 560  YTVGGVKGRIEEVYVNCDAGRIRRPLIVVENGEPRLKHEHVELLRKGEWTWSDLIENGIV 619

Query: 649  ELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARR 708
            E +  EEEE+        Y+  D+ +  P + TH E+  + +LG+    IPF  ++ + R
Sbjct: 620  EYLDAEEEENA-------YIATDVSELTP-QHTHLEIVPAAILGIIAMTIPFIEYNQSPR 671

Query: 709  VLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPR 768
              YQ+   + Q++G P  N  +R+D   H ++YPQ+PL +T I D           +LP 
Sbjct: 672  NSYQA-AMAKQSLGIPHYNFKLRMDPRMHVMYYPQKPLVKTRIFD-----------LLPL 719

Query: 769  PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRR- 827
              L  G N +VAV    GYN +D++V+N+A++ERGM RS   R+Y+AE       ++ R 
Sbjct: 720  DNLPYGTNMVVAVLTGGGYNIQDAVVINKAAIERGMSRSVFFRTYEAEERRYPGGLEDRF 779

Query: 828  ----SSDDMVNFGKIQSKIGRVDSLDD-DGFPFIGANLQSGDIVIGKYA----------- 871
                   D+++    Q+     +++D  DG  ++ A L  G  V+ + +           
Sbjct: 780  EKPSLEKDLLDVKPPQA----YEAIDPVDGIAYVEAELYGGQAVVSRTSPPRFYTSTLEP 835

Query: 872  ---DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKG 928
                   D S+ L+H E+G++ +V +  +  G   + V +R +R   LGDKF+S HGQKG
Sbjct: 836  RVMTKRKDTSLLLRHGEKGIIDRVFIMESPGGIKLAKVRVRDLRPTELGDKFASRHGQKG 895

Query: 929  VLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKR 988
            V+G L  QE+ PFT +GI PD++INPHA PSR T GQLLEA  GK  A  G+ I      
Sbjct: 896  VVGMLVPQEDMPFTEEGITPDLIINPHAIPSRMTVGQLLEAITGKAAALAGRRID----- 950

Query: 989  YATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDK 1048
             AT F  PS+D I E L   GF   G E LYDG TGE + + IFIG  +Y++L H+  DK
Sbjct: 951  -ATAFEPPSLDEIREILRSYGFRSDGKEVLYDGVTGEKLEAEIFIGVVYYEKLHHLVADK 1009

Query: 1049 VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHI 1108
            +  R  G V  LTRQP   R R GG++FGEME+DCL+ HGA+  L ERL   SD   + +
Sbjct: 1010 MHARARGRVQILTRQPTEGRAREGGLRFGEMEKDCLVGHGASMLLRERLLESSDKTTIWV 1069

Query: 1109 CRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
            C  C  +     R          P C +C     +    V Y  KLL QEL  +G++++ 
Sbjct: 1070 CENCGYMGWFDAR-------KNTPVCPVCGDKGRLSPVEVSYAFKLLLQELTGLGLSVRL 1122


>gi|15920466|ref|NP_376135.1| DNA-directed RNA polymerase subunit B [Sulfolobus tokodaii str. 7]
 gi|15621249|dbj|BAB65244.1| DNA-directed RNA polymerase subunit B [Sulfolobus tokodaii str. 7]
          Length = 1126

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 385/1197 (32%), Positives = 586/1197 (48%), Gaps = 158/1197 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVE-PGYDPSKKGEGEWRYASMRFGQ 90
            SFF   GLV   ++S+N+F++N LQ+  D  GE I E PG               ++ G+
Sbjct: 14   SFFKLRGLVRQHLDSFNDFLRNKLQQIIDEQGEIITEIPGL-------------KIKLGK 60

Query: 91   VTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
            +  D+P     + G   ++ P  ARL+N+TY+  + +       T   + ++        
Sbjct: 61   IRYDRPGIRETDKGPPKELTPLEARLRNLTYAVPLYL-------TMIPIENN-------- 105

Query: 151  YIQKEVLSDETTNIIIGRIPVMVK------SDLCWMKGVEKGDCDFDHGGYFIIKGAEKV 204
                  +  E   + IG +P+M+K      S++ + + ++ G+   D GGYFI+ G EKV
Sbjct: 106  ------IEGEPIEVYIGDLPIMLKSIADPTSNMTYDELIKIGEDPKDPGGYFIVNGTEKV 159

Query: 205  FVAQEQICLKRLWV---SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYF 261
             VAQE +   R+ V    +    T   K  +      V++V     E +K     +S   
Sbjct: 160  IVAQEDLATNRVLVDYGKSGSNITHVAKITSAAAGYRVQVV----IERLKDSSIQVSFAT 215

Query: 262  LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNAL 321
            +  +IP  I+  ALG ++DK+IV  +     D  I N L  S+  A +         +AL
Sbjct: 216  VPGKIPFVIMMRALGFTTDKDIVYAVSL---DPEIQNELLPSLEQASS----ITTVEDAL 268

Query: 322  KYVDKLIKGTTFPPGES-------TEECMNTYLFP----SLHGTKQKARFLGYMVKCLLQ 370
             ++     G     G+         E+ ++ Y  P    S    K+K  +L   V  LL+
Sbjct: 269  DFI-----GNRIAIGQKRENRIQRAEQIIDKYFLPHIGTSPEDRKKKGYYLAAAVNKLLE 323

Query: 371  AYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEY 430
             Y GRR+ D++D + NKR+ LAG+L     +V      K +   L++     R +  +  
Sbjct: 324  LYLGRRQPDDKDHYANKRVRLAGDLFTSLFRVAFKAFVKDLVYQLEKAKVRGRRLS-LTA 382

Query: 431  YLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTG 490
             + A I+T  +  A +TG W     RT    G+   L R N L  L  LRR    +    
Sbjct: 383  LVRADIITERVRHALATGNWVG--GRT----GVSQLLDRTNWLSMLSHLRRVVSSLARGQ 436

Query: 491  KVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQ-LFNSGM--- 546
               +AR  H + WG++C   TP+G N GLVKNL +   VS  I E   E+ ++  G+   
Sbjct: 437  PNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALLAQVSVGINESSIEKVIYEQGVISQ 496

Query: 547  EKLADDASYSLG-GKF----KVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKR- 600
            E+L D  S      K+    KV+++G  +G   D      ++R  RR  ++  +V +   
Sbjct: 497  EELIDRLSAEEDINKYLNWSKVYLNGRLLGYYPDGKELAEKIRELRRSGKISDEVNVAHI 556

Query: 601  -DELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGIIELVG 652
              E  +EV I  D GR+ RPL++V++ GK       I+ L     TF  L+  G IE + 
Sbjct: 557  VTEYINEVHINCDGGRVRRPLIIVKD-GKPLVSEDDIEKLRKGEITFDDLVKQGKIEFLD 615

Query: 653  TEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 712
             EEEE+   A   + L KD         TH E+    +LG++  IIP+  H+ + R  YQ
Sbjct: 616  AEEEENAYIALNPQDLTKD--------HTHLEIWPPAILGITASIIPYPEHNQSPRNTYQ 667

Query: 713  SQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELY 772
            S   + QA+G    N  +R DT +H L YPQ+PL  T I D +     G+N    RP   
Sbjct: 668  S-AMAKQALGLYAANYQLRTDTRAHLLHYPQKPLVGTKILDII-----GYND---RPA-- 716

Query: 773  NGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDM 832
             G NAI+AV  + GYN ED+++MN++S+ERGM+RS   R Y  E    E++      D +
Sbjct: 717  -GNNAILAVMSYTGYNMEDAIIMNKSSVERGMYRSTFFRLYSTE----ELKYPGGQEDKI 771

Query: 833  V-----NFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA--------------DS 873
            +       G   ++  R+  L+D+G       ++ GD++IGK +               S
Sbjct: 772  MKPEPGTKGYKGNEYYRL--LEDNGIVSPEVEVKGGDVLIGKVSPPRFLQEFKELSPEQS 829

Query: 874  GADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
              D SI  +H E G+V  V+++ + +G     V +R +R P +GDKF++ HGQKGV+G L
Sbjct: 830  KRDTSIVTRHGEMGIVDLVLVTESSEGNKLVKVRVRDLRIPEIGDKFATRHGQKGVIGML 889

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
              Q + P+T++G+VPDI++NPHA PSR T GQ++EA  GK +A  GK +       ATPF
Sbjct: 890  IDQADMPYTVKGVVPDIILNPHALPSRMTIGQIMEALAGKYVALTGKPVD------ATPF 943

Query: 994  -ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFR 1052
              +P ++ I + +  +G    GTE +YDGRTG+ ++  I  G  +YQ+L HM  DK+  R
Sbjct: 944  IESPPLEEIRKGIRESGLLPDGTEVVYDGRTGQKLKGRILFGIVYYQKLHHMVADKMHAR 1003

Query: 1053 NTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKC 1112
              GPV  LTRQP   R R GG++FGEMERDCLI  G A  + +RL   SD   +++C KC
Sbjct: 1004 ARGPVQILTRQPTEGRAREGGLRFGEMERDCLIGFGTAMLIKDRLLDNSDKATIYVCDKC 1063

Query: 1113 KNVANVIQRVVGGGRKVRGPY-CRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
                      +G   + R  Y C I     ++    V Y  KLL QEL SM I+ + 
Sbjct: 1064 G--------YIGWYDRARNKYVCPIHGENANLYPVTVSYAFKLLLQELMSMVISPRL 1112


>gi|358060336|dbj|GAA93741.1| hypothetical protein E5Q_00387 [Mixia osmundae IAM 14324]
          Length = 1152

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 389/1202 (32%), Positives = 567/1202 (47%), Gaps = 155/1202 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN  +   L+    S     V    DP+      W    + +  +
Sbjct: 41   AFLAVKGLVKQHIDSYNHLVDVELRAIVLSEANRRVVSDVDPN------W---FLEYTDI 91

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             +  P     NG     + P+  RL++MTY++ + V V   +Y +          G    
Sbjct: 92   YVGSPERLQMNGLIHKPLTPQECRLRDMTYAAPIYVDV---IYAK----------GSRNV 138

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLC--WMKGVEK----GDCDFDHGGYFIIKGAEKVF 205
            + K+ L        IGRIPVM++S+ C  W K  E+     +C  D GGYF++KG EKV 
Sbjct: 139  VSKKQL--------IGRIPVMLRSNKCVLWDKDPEQMQSLTECPLDPGGYFVVKGTEKVI 190

Query: 206  VAQEQICLKRLWVSN-----SMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVY 260
            + QEQ+   R+ V N     S G   +  S     +    + + SK       + VL   
Sbjct: 191  LVQEQLSKNRVLVENDGRGPSKGIIASVTSSTLERKSKTYVAEKSK-------KIVLRHN 243

Query: 261  FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNA 320
             L  ++PI I   ALG+  D EI+ L+   C     L   FA   +   +   + + + A
Sbjct: 244  SLHEDVPIVIALKALGIVGDHEIMLLV---CGTSPELRERFAINFEDSTRLGIYTRTQ-A 299

Query: 321  LKYVDKLIK--------GTTF---PPGESTEECMNTYLFPSLH----GTKQKARFLGYMV 365
            L+YV   +K        G  F   P  E   E + T +   +       + KA ++  M+
Sbjct: 300  LEYVGHRVKLSKRVAPGGNNFVRRPVAEEALELLATLVLAHVPVENLNFRPKAIYMALMI 359

Query: 366  KCLLQAYSGRRKCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKRMAKA 414
            + +L A       D+RD   NKRLELAG+LL            R+ K ++    K+ ++ 
Sbjct: 360  RRVLAAMLDPTMTDDRDYVGNKRLELAGQLLSLLFEDLFKLFNRDFKTNVDKMLKKPSRT 419

Query: 415  LQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQ 474
             + D  G + +      +    +T+G  RA +TG WS    R ER +GI   L R + + 
Sbjct: 420  NEFD--GLKVLS-----MQTGSITDGFVRAIATGNWSLKRFRMER-AGITHVLSRLSYIS 471

Query: 475  TLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSIL 534
             L  + R   Q + T KV   R    S WG +C   TP+GE CGLVKNL +   ++T + 
Sbjct: 472  ALGMMTRITSQFEKTRKVSGPRALQASQWGMLCPSDTPEGEACGLVKNLALMTHITTDVE 531

Query: 535  EPIFEQL-FNSGMEKLADDASYSL--GGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKE 591
            E    +L +  G+E + +     L   G F V+++G  +G+ ++   F    R  RR  E
Sbjct: 532  ETSLWRLAYVLGLEDVCNVTGTELYAPGTFVVYLNGVLLGLTQEPRVFTQRFRAFRRAGE 591

Query: 592  LPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE------NMGKIKSLEGKNYTFQALLDH 645
            +   V I  +  Q+ + I  D GRI RP+++V+          I +L     TF   L  
Sbjct: 592  ISEFVSIYINTQQAAIHIASDGGRICRPMIIVDRGRPRVTDAHIAALRASMKTFDDFLKE 651

Query: 646  GIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFT-HCELDMSFLLGLSCGIIPFANHD 704
            G+IE +   EE D      I    +DI+     KFT H E++   LLG   G+IPF +H+
Sbjct: 652  GLIEYLDVNEENDA----HIALYERDIK-----KFTTHLEIEPFTLLGAVAGLIPFPHHN 702

Query: 705  HARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNH 764
             + R  YQ      QAIG    N   R+DTL + + YPQRPL  T   +           
Sbjct: 703  QSPRNTYQCAM-GKQAIGAIAYNQLARIDTLLYLMVYPQRPLVTTKTIE----------- 750

Query: 765  ILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQV 824
            ++   +L  GQNA+VAV    GY+ ED+L++NRAS++RG  R +  R Y   +     Q 
Sbjct: 751  LVKYDQLPAGQNAMVAVMSFSGYDIEDALILNRASVDRGFGRCQVFRKYSTYIK----QY 806

Query: 825  KRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA--------- 875
               + D + +     S   R   +D DG P +G  ++ GDI + K   S A         
Sbjct: 807  PNNTHDRLADPPPPDSDRHRKYKVDADGLPAVGDRVKEGDIYVNKQTPSNATDNSSTASS 866

Query: 876  ------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGV 929
                  D  +  +    G + KV+LS  ++G     + +RQ R P LGDKFSS HGQKGV
Sbjct: 867  MPSHWRDAVMTYRANMNGHIDKVMLSDMENGTQLVKILMRQTRRPELGDKFSSRHGQKGV 926

Query: 930  LGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRY 989
             G +  QE+ PFT QGI PDI++NPH FPSR T G++LE   GK       GI  G   Y
Sbjct: 927  CGLIVPQEDMPFTDQGICPDIIMNPHGFPSRMTVGKMLELLSGKA------GILGGKFEY 980

Query: 990  ATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKV 1049
             T F     + ++  L +AG+S  G + L  G TG+ + S +F GP FYQ+L HM  DK+
Sbjct: 981  GTAFGGSKAEDMSRALIQAGYSYAGKDYLTSGITGQALESYVFFGPIFYQKLKHMVIDKM 1040

Query: 1050 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHIC 1109
              R+ GP   LTRQP   R R GG++ GEMERDCLIAHGA+  L ERL   SD++++ +C
Sbjct: 1041 HARSRGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAHGASHLLLERLMLSSDAFEVDVC 1100

Query: 1110 RKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFD 1169
            + C             G      +C  C SGD +VK  +PY +KLL QEL +M I  +  
Sbjct: 1101 QSC-------------GFMGYNGWCAHCKSGDKVVKLMLPYASKLLFQELLAMNIAPRLV 1147

Query: 1170 TE 1171
             E
Sbjct: 1148 LE 1149


>gi|146302818|ref|YP_001190134.1| DNA-directed RNA polymerase subunit B [Metallosphaera sedula DSM
            5348]
 gi|145701068|gb|ABP94210.1| DNA-directed RNA polymerase, subunit B' / DNA-directed RNA
            polymerase, subunit B' [Metallosphaera sedula DSM 5348]
          Length = 1124

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 389/1198 (32%), Positives = 587/1198 (48%), Gaps = 161/1198 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVE-PGYDPSKKGEGEWRYASMRFGQ 90
            ++F   GLV   ++S+N+FIKN LQ+  D  GE I E PG               +R G+
Sbjct: 13   AYFKSRGLVRQHLDSFNDFIKNKLQEIIDEQGEIITEIPGL-------------KIRLGK 59

Query: 91   VTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
            + + KP     + GD+ ++ P  ARL+N+TY++ + + +                T  E 
Sbjct: 60   IRVGKPRVREADKGDK-EITPMEARLRNLTYAAPIFLTM----------------TPVEN 102

Query: 151  YIQKEVLSDETTNIIIGRIPVMVK------SDLCWMKGVEKGDCDFDHGGYFIIKGAEKV 204
             I+      + T + IG IP+M+K      S+    K VE G+   D GGYFII G+E+V
Sbjct: 103  NIE-----GDPTEVHIGDIPIMLKSIADPTSEFSQDKLVEIGEDPKDPGGYFIINGSERV 157

Query: 205  FVAQEQICLKRLWVS-NSMGWTVAYKSENKRNRLIVRL-VDMSKFEDIKGGEKVLSVYFL 262
             V QE +   R+       G  V + ++   +    R+ + + + +D       + V F 
Sbjct: 158  IVTQEDLATNRVLTDVGKAGSNVTHTAKIISSTSGYRVPITIERLKD-----STIHVSFP 212

Query: 263  ST--EIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNA 320
            S    IP  IL  ALGV +D++I   +     D  I N L  S+  A +   +     +A
Sbjct: 213  SAPGRIPFAILMRALGVETDEDITLAVSL---DPQIQNELLPSLEQASSISSK----EDA 265

Query: 321  LKYVDKLIKGTTFPPG-------ESTEECMNTYLFPSLHGTK-----QKARFLGYMVKCL 368
            L ++     G     G       +  E+ ++ Y  P + GT       KA +L + V  L
Sbjct: 266  LDFI-----GNRVAIGQKREMRIQKAEQILDKYFLPHI-GTNPSDRVAKAYYLAFAVSKL 319

Query: 369  LQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPI 428
            ++ Y GRR+ D++D + NKRL+LAG+L     +V      K +   L++     R +  I
Sbjct: 320  IELYLGRREPDDKDHYANKRLKLAGDLFASLFRVAFKAFVKDLVFQLEKSKVRGRRL-AI 378

Query: 429  EYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQY 488
               +   I++  +  A +TG W     RT    G+   L R N L  L  LRR    +  
Sbjct: 379  NALVRPDIISERIRHALATGNWVG--GRT----GVSQLLDRTNWLSMLSHLRRVVSSLAR 432

Query: 489  TGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQ-LFNSGME 547
                 +AR  H + WG++C   TP+G N GLVKN+ +   +S  I E   E+ L+N G+ 
Sbjct: 433  GQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNIALLAQISVGINEKSLERTLYNLGVV 492

Query: 548  KLADDASYSLGGK----------FKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVE 597
             + DDA   +  +           KV ++G  IG   D      ++R  RR  EL  +V 
Sbjct: 493  PI-DDAIKKVKSEEGQSENYQTWSKVILNGRLIGYYPDGRELAEKIRESRREGELSDEVN 551

Query: 598  IKRD--ELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGII 648
            +  +  E  +EV I  D+GR+ RPL+VV++ GK       I++L+    TF  L+  G I
Sbjct: 552  VSYNITETFNEVYINSDSGRVRRPLIVVKH-GKPLVTKEDIENLKKGKITFDTLVKEGKI 610

Query: 649  ELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARR 708
            E +  EEEE+   A   K + KD         TH E+    +LG++  IIP+  H+ + R
Sbjct: 611  EFLDAEEEENAYIALEPKDVTKD--------HTHLEIWAPAILGITASIIPYPEHNQSPR 662

Query: 709  VLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPR 768
              YQS   + QA+G    N  IR DT +H L YPQ+P+ +T   + +G           R
Sbjct: 663  NTYQS-AMAKQALGLYAANYQIRTDTRAHLLHYPQKPIVQTRALEAIG--------YTER 713

Query: 769  PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRS 828
            P    G NAI A+  + GYN ED+++MN++S++RGMFRS   R Y AE    E++     
Sbjct: 714  PA---GNNAIFALMSYTGYNMEDAVIMNKSSVDRGMFRSTFFRLYSAE----EIKYPGGQ 766

Query: 829  SDD-MVNFGKIQSKIGR--VDSLDDDGFPFIGANLQSGDIVIGKYA-------------- 871
             D+ ++    ++   G+     L+ +G      +++ GD++IGK +              
Sbjct: 767  EDEILLPEPGVRGYKGKDYYRLLESNGIVSPEVDVKGGDVLIGKVSPPRFLQEFKELSPD 826

Query: 872  DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLG 931
             +  D SI  +H ERG V  V+++   +G     V +R +R P +GDKF++ HGQKGV+G
Sbjct: 827  QAKRDTSIITRHGERGTVDLVLVTETSEGNKLVKVRVRDLRIPEIGDKFATRHGQKGVIG 886

Query: 932  FLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYAT 991
             L  Q + P+T  G+VPDI++NPHA PSR T GQ++EA  GK +AA G  I       AT
Sbjct: 887  MLIPQVDMPYTTSGLVPDIILNPHALPSRMTVGQIMEAIAGKFVAATGNPID------AT 940

Query: 992  PFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKF 1051
            PF    ++ I  +L   G+   G+E +YDGRTGE ++  I  G  +YQ+L HM  DK+  
Sbjct: 941  PFYNTPIEEIQRKLLEHGYLSDGSEVVYDGRTGEKLKGRILFGIVYYQKLHHMVADKMHG 1000

Query: 1052 RNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRK 1111
            R  GPV  LTRQP   R R GG++FGEMERDCLI +GAA  + +RL   SD   +++C +
Sbjct: 1001 RGRGPVQILTRQPTEGRAREGGLRFGEMERDCLIGYGAAMLIKDRLLDNSDRATVYVCEQ 1060

Query: 1112 CKNVANVIQRVVGGGRKVRGPY-CRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
            C          VG   + +  Y C I      +    + Y  KLL QEL SM I  K 
Sbjct: 1061 CG--------YVGWYDRTKNKYICPIHGDKTTLYPVVISYAFKLLLQELMSMVIAPKL 1110


>gi|223478302|ref|YP_002582840.1| DNA-directed RNA polymerase subunit B [Thermococcus sp. AM4]
 gi|214033528|gb|EEB74355.1| DNA-directed RNA polymerase subunit B [Thermococcus sp. AM4]
          Length = 1122

 Score =  524 bits (1350), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 387/1197 (32%), Positives = 602/1197 (50%), Gaps = 170/1197 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            S++ E GLV   ++SYN FI++GLQ+  + FG      G  P            ++FG++
Sbjct: 22   SYWKEKGLVRQHLDSYNAFIEHGLQEVINEFG------GVKPDIPN------FEVKFGKI 69

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             L +P F    G     ++P  AR++N+TYS+ + +++   V             G EQ 
Sbjct: 70   RLGEPIFQEAQG-QRRPLYPMDARIRNLTYSAPLFLELIPVV------------NGIEQ- 115

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
                    E   + IG +P+M+KS  C + G      +E G+   D GGYFII G+E+V 
Sbjct: 116  --------EPVEVRIGELPLMLKSKACRLYGLSDEELIELGEDPKDPGGYFIINGSERVI 167

Query: 206  VAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVD-------MSKFEDIKGGEKVLS 258
            V+ E +   +  V          + + ++N+++ ++         +   E  K G   +S
Sbjct: 168  VSIEDLAPNKTLV----------ERDERQNKVVAKVFSYRHGYRALITVESRKDGILYVS 217

Query: 259  VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGR 318
            +  +   +    +  ALG+ SDKEIV  I    ED  I  +LF ++ DA +     R   
Sbjct: 218  IPNVPKPVKFVYVMRALGLLSDKEIVEAI---SEDPRIQQVLFNNLEDASD----IRTQE 270

Query: 319  NALKYVDKLIKGTTFP--PGE----STEECMNTYLFPSL----HGTKQKARFLGYMVKCL 368
             AL ++ +L    + P  P E      E  ++  L P +       K KA +LG M   +
Sbjct: 271  EALDFIGRL----SLPGQPKEYRLRRAEHIIDNNLLPHMGVEPENRKAKAYYLGMMALKV 326

Query: 369  LQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARK----RMAKALQRDLYGDR- 423
            L+   G R  D++D + NKRL+LAG+LL+   +V      K    +M K  QR   G+R 
Sbjct: 327  LELALGLRGEDDKDHYANKRLKLAGDLLKDLFRVAFGQLVKDMQYQMTKTYQRK--GERY 384

Query: 424  TVRPIEYYLDASI----LTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDL 479
            T   I+ ++  S+    L+  +  A +TG+W  P  RT    G+   L R N + TL  L
Sbjct: 385  TFENIQRFVRNSVRPDVLSERIEHALATGSW--PGGRT----GVSQLLDRTNYISTLSHL 438

Query: 480  RRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEP-IF 538
            RR    +       +AR  H +HWG+IC   TP+G NCGLVKNL +   ++T I E  + 
Sbjct: 439  RRVTSPLSRDQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTGIPEEEVR 498

Query: 539  EQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELP--TQV 596
            E L   G+  + +       G ++V+++G  IG  +D  + V  +R  RR  ++     V
Sbjct: 499  EYLLKLGVVPIEERRPSP--GLYRVYLNGVLIGTIEDGKALVQTIRSDRRAGKISDVINV 556

Query: 597  EIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGIIE 649
             I  +E   E+ +  D GR+ RPL++VEN GK       +++++     +  L+  G+IE
Sbjct: 557  AIYEEEDVREIYVNSDDGRVRRPLIIVEN-GKPKLTREHVEAIKNGQLEWSDLIRMGVIE 615

Query: 650  LVGTEEEEDCCTA---WGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHA 706
             +  EEEE+   A   W +             + TH EL  + +LG+   ++P+  H+ A
Sbjct: 616  YLDAEEEENAYVATWPWEVTE-----------EHTHLELMPAAILGIPASLVPYPEHNAA 664

Query: 707  RRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHIL 766
             R  Y +   + Q++G    N  IRVDT  H + YPQ PL  + I   +G          
Sbjct: 665  PRNTYGA-GMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVG--------FE 715

Query: 767  PRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEM--QV 824
             RP    GQN +VAV  + GYN ED++++N+AS+ERG+ RS   R+Y+AE + + +  Q+
Sbjct: 716  ERP---AGQNFVVAVLSYQGYNMEDAIIINKASIERGLARSTFFRTYEAE-EKRYLGGQM 771

Query: 825  KRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA-------DSGA-- 875
             R    D    G +  +  R  +LD+DG  F  + ++  D+++G+ +        SG   
Sbjct: 772  DRFEKPDPTIKGYLGDRYYR--NLDEDGIIFPESKVEGKDVLVGRTSPPRFLEEQSGLGG 829

Query: 876  -------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKG 928
                   + S+ ++ +E+G+V KV+++   DG     V++R +R P LGDKF+S HGQKG
Sbjct: 830  IALQERRETSVAVRPSEKGIVDKVIITETGDGTKLVKVTVRDLRIPELGDKFASRHGQKG 889

Query: 929  VLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKR 988
            V+G +  QE+ P+T  GIVPD+++NPH  PSR T GQL+EA  GK +A+L      G + 
Sbjct: 890  VIGLIVPQEDMPWTENGIVPDLIVNPHGIPSRMTVGQLIEAIGGK-VASL-----KGRRV 943

Query: 989  YATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDK 1048
              T F     + + ++L   GF   G E +YDG TG  + + IF+G  +YQRL HM  DK
Sbjct: 944  DGTAFIGEPEERLRKELEELGFKHTGREVMYDGITGRRLEADIFVGVIYYQRLHHMVADK 1003

Query: 1049 VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHI 1108
            +  R+ GPV  LT+QP   R R GG++FGEMERD L+ HGAA  L ERL   SD  ++ +
Sbjct: 1004 MHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWV 1063

Query: 1109 CRKCKNVANVIQRVVGGGRKVRGP-YCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
            C  C ++A   +R        RG  YC +C   + I K  + Y  KLL  EL +M I
Sbjct: 1064 CENCGHIALEDKR--------RGKVYCPVCGEEERISKVEMSYAFKLLLDELKAMVI 1112


>gi|68131916|gb|AAY85236.1| RNA polymerase II second largest subunit [Vitis piasezkii]
          Length = 951

 Score =  524 bits (1350), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 342/994 (34%), Positives = 528/994 (53%), Gaps = 108/994 (10%)

Query: 109  MFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGR 168
            +FP+ ARL+N+TYS+ + V V       KR+     K G +  +++   + E T + IG+
Sbjct: 5    LFPKAARLRNLTYSAPLYVDVT------KRI----IKKGHD--LEEVTETQEFTKVFIGK 52

Query: 169  IPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV---- 218
            +P+M++S  C +         E G+C +D GGYFII G+EKV +AQE++    ++V    
Sbjct: 53   VPIMLRSSYCTVYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 112

Query: 219  -SNSMGWTVAYKS-ENKRNR----LIVRLVDMSKFEDIKGGEKV-LSVYFLSTEIPIWIL 271
              N   +    +S    +NR    + VR++  +  +    G+ +  ++ ++ TEIPI I+
Sbjct: 113  QPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIV 172

Query: 272  FFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGT 331
            F ALG  +DK+I+  I +   D  ++ +L  S+ +A       +  + AL Y+ K  +G+
Sbjct: 173  FRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAF----VIQNQQVALDYIGK--RGS 226

Query: 332  TFPPGESTE-------ECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRRKCDN 380
            T   G + E       E +   + P +    +   +KA + GY++  LL    GRR  D+
Sbjct: 227  TV--GVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDD 284

Query: 381  RDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNG 440
            RD + NKRL+LAG LL    ++      + +   +Q+ +   + V  +++ + A  +T+G
Sbjct: 285  RDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN-LQFAIKAKTITSG 343

Query: 441  LSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHP 500
            L  + +TG W        R +G+   L R     TL  LRR    +   GK+   R  H 
Sbjct: 344  LKYSLATGNWGQANAAGTR-AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHN 402

Query: 501  SHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGG 559
            SHWG +C   TP+G+ CGLVKNL +   ++  S   PI E L     E   + +   +  
Sbjct: 403  SHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQ 462

Query: 560  KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRP 619
              K+FV+G W+G+ ++    V  LR+ RR+ ++ T+V + RD    E+R++ D GR  RP
Sbjct: 463  STKIFVNGCWVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRP 522

Query: 620  LLVVENMG------KIKSLEGKNYT----FQALLDHGIIELVGTEEEEDCCTAWGIKYLL 669
            L +VE          I++L+ +       +  L+  G IE V TEEEE    +  I  L+
Sbjct: 523  LFIVEKQRLLIKKRDIRALQLRESPEDGGWHDLVSKGFIEYVDTEEEETTMISMTINDLI 582

Query: 670  K---DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTT 726
                + E+     +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   T
Sbjct: 583  SARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGIYVT 641

Query: 727  NPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLG 786
            N  +R+DTL++ L+YPQ+PL  T   + L      H   LP      G NAIVA+  + G
Sbjct: 642  NYQLRMDTLAYVLYYPQKPLVTTRAMEHL------HFRQLP-----AGINAIVAIACYSG 690

Query: 787  YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK------IQS 840
            YNQEDS++MN++S++RG FRS   RSY+ E       VK        +FG+      +  
Sbjct: 691  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE-------DFGRPNRENTMGM 743

Query: 841  KIGRVDSLDDDGFPFIGANLQSGDIVIGKYA-----DSGA--------DHSIKLKHTERG 887
            + G  D LDDDG    G  +   D++IGK       DS          DHS  L+H+E G
Sbjct: 744  RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDSQGQASRYTRRDHSTSLRHSESG 803

Query: 888  MVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIV 947
            MV +V+L++N DG  F  V +R VR P +GDKFSS HGQKG +G   +QE+ P+T++GI 
Sbjct: 804  MVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 863

Query: 948  PDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHR 1007
            PDI++NPHA PSR T GQL+E  +GK  A +GK      +  ATPF   +VD I++ LH+
Sbjct: 864  PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK------EGDATPFTDVTVDNISKALHK 917

Query: 1008 AGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRL 1041
             G+   G E +Y+G TG  + ++IF+GPT+YQRL
Sbjct: 918  CGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 951


>gi|237823479|pdb|2WAQ|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
            Directed Rna Polymerase
 gi|237823491|pdb|2WB1|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
            Directed Rna Polymerase
 gi|237823507|pdb|2WB1|R Chain R, The Complete Structure Of The Archaeal 13-Subunit Dna-
            Directed Rna Polymerase
 gi|323462789|pdb|2Y0S|B Chain B, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
            P21 Space Group
 gi|323462805|pdb|2Y0S|R Chain R, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
            P21 Space Group
 gi|400260743|pdb|4AYB|B Chain B, Rnap At 3.2ang
 gi|400260760|pdb|4B1O|B Chain B, Archaeal Rnap-Dna Binary Complex At 4.32ang
 gi|400260780|pdb|4B1P|R Chain R, Archaeal Rnap-Dna Binary Complex At 4.32ang
 gi|219814433|gb|ACL36490.1| RNA polymerase subunit 2 [Sulfolobus shibatae B12]
          Length = 1131

 Score =  523 bits (1348), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 381/1208 (31%), Positives = 590/1208 (48%), Gaps = 167/1208 (13%)

Query: 28   KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVE-PGYDPSKKGEGEWRYASM 86
            K   ++F   GLV   ++SYN+F++N LQ+  D  GE   E PG               +
Sbjct: 15   KVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEIPTEIPGL-------------KV 61

Query: 87   RFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKT 146
            R G++ + KP     + G E ++ P  ARL+N+TY++ + +       T   V ++    
Sbjct: 62   RLGKIRIGKPRVRESDRG-EREISPMEARLRNLTYAAPLWL-------TMIPVENN---- 109

Query: 147  GREQYIQKEVLSDETTNIIIGRIPVMVKSDL------CWMKGVEKGDCDFDHGGYFIIKG 200
                      +  E   + IG +P+M+KS +         K +E G+   D GGYFI+ G
Sbjct: 110  ----------IEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNG 159

Query: 201  AEKVFVAQEQICLKRLWVS-----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEK 255
            +E+V V QE +   R+ V      +++  T    S     R+ V +      E +K G  
Sbjct: 160  SERVIVTQEDLAPNRVLVDTGKTGSNITHTAKIISSTAGYRVPVTI------ERLKDGTF 213

Query: 256  VLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFR 315
             +S   +  +IP  IL  ALG+ +D++IV  +     D  I N LF S+  A +  +   
Sbjct: 214  HVSFPAVPGKIPFVILMRALGILTDRDIVYAVSL---DPEIQNELFPSLEQASSIANV-- 268

Query: 316  KGRNALKYVDKLIKGTTFPPG-------ESTEECMNTYLFPSLHGT----KQKARFLGYM 364
               +AL ++     G+    G       E  ++ ++ Y  P L  +    ++KA +L Y 
Sbjct: 269  --DDALDFI-----GSRVAIGQKRENRIEKAQQIIDKYFLPHLGTSADDRRKKAYYLAYA 321

Query: 365  VKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRT 424
            +  +++ Y GRR+ D++D + NKRL LAG+L     +V      K +   L++     R 
Sbjct: 322  ISKVIELYLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKSKVRGRK 381

Query: 425  VRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQ 484
            +  ++  +   I+T  +  A +TG W     RT    G+   L R N L  L  LRR   
Sbjct: 382  L-ALKALVRPDIVTERIRHALATGNWVG--GRT----GVSQLLDRTNWLSMLSHLRRVIS 434

Query: 485  QVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQ-LFN 543
             +       +AR  H + WG++C   TP+G N GLVKNL +   ++  I E I E+ L+ 
Sbjct: 435  SLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALMAQIAVGINEKIVEKTLYE 494

Query: 544  SGMEKLADDA-SYSLGGK--------FKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPT 594
             G+  + +     + GG+         KV ++G  +G  +D      ++R +RR+ E+  
Sbjct: 495  MGVVPVEEVIRRVTEGGEDQNEYLKWSKVILNGRLVGYYRDGEELAKKIRERRRKGEISD 554

Query: 595  QVEIKR--DELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHG 646
            +V +     +  +EV +  D+GR+ RPL++V N         I+ L+  + TF  L+  G
Sbjct: 555  EVNVGHIVTDFINEVHVNCDSGRVRRPLIIVSNGNPLVTREDIEKLDSGSITFDDLVRQG 614

Query: 647  IIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHA 706
             IE +  EEEE+        Y+  +  D  P + TH E+    +LG++  IIP+  H+ +
Sbjct: 615  KIEYLDAEEEENA-------YVALEPSDLTP-EHTHLEIWSPAILGITASIIPYPEHNQS 666

Query: 707  RRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHIL 766
             R  YQS   + QA+G    N  +R DT +H L YPQRPL +T   D +G          
Sbjct: 667  PRNTYQS-AMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQTRALDIIGYTN------- 718

Query: 767  PRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKR 826
             RP    G NAI+AV    GYN EDS++MNR+S+ERGM+RS   R Y  E    E++   
Sbjct: 719  -RPA---GNNAILAVISFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTE----EVKYPG 770

Query: 827  RSSDDMVN--------FGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA------- 871
               D +V          GK   ++     L+D+G       ++ GD++IGK +       
Sbjct: 771  GQEDKIVMPEPGVRGYKGKEYYRL-----LEDNGVVSPEVEVKGGDVLIGKVSPPRFLQE 825

Query: 872  -------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMH 924
                    +  D SI  +H E G+V  V+++   +G     V +R +R P +GDKF+S H
Sbjct: 826  FKELSPEQAKRDTSIVTRHGEMGIVDLVLITETAEGNKLVKVRVRDLRIPSIGDKFASRH 885

Query: 925  GQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICS 984
            GQKGV+G L  Q + P+T++G+VPD+++NPHA PSR T GQ++E   GK  AAL   I  
Sbjct: 886  GQKGVIGMLIPQVDMPYTVKGVVPDVILNPHALPSRMTLGQIMEGIAGK-YAALSGNIVD 944

Query: 985  GLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHM 1044
                 ATPF    ++ +  ++ + G+    TE  YDGRTG+ ++S I+ G  +YQ+L HM
Sbjct: 945  -----ATPFYKTPIEQLQNEILKYGYLPDATEVTYDGRTGQKIKSRIYFGVVYYQKLHHM 999

Query: 1045 SEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSY 1104
              DK+  R  GPV  LTRQP   R R GG++FGEMERDCLI  G A  L +RL   SD  
Sbjct: 1000 VADKIHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLIGFGTAMLLKDRLLDNSDRT 1059

Query: 1105 QMHICRKCKNVANVIQRVVGGGRKVRGPY-CRICDSGDDIVKANVPYGAKLLCQELFSMG 1163
             +++C +C          +G   K +  Y C I     ++    V Y  KLL QEL SM 
Sbjct: 1060 TIYVCDQCG--------YIGWYDKNKNKYVCPIHGDKSNLFPVTVSYAFKLLIQELMSMI 1111

Query: 1164 ITLKFDTE 1171
            I+ +   E
Sbjct: 1112 ISPRLILE 1119


>gi|45545313|gb|AAS67504.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Candida tropicalis]
          Length = 1020

 Score =  523 bits (1348), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 358/1061 (33%), Positives = 533/1061 (50%), Gaps = 140/1061 (13%)

Query: 201  AEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE-----NKRNRLIVRLVDMSKFEDIKG-- 252
            +EKV +AQE+     + V   +    +++ +E      K +RLI  +       D KG  
Sbjct: 1    SEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALEKGSRLISSMQIKLYGRDEKGVA 60

Query: 253  GEKV-LSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFAS------IH 305
            G  +  ++ ++  +IPI I+F ALGV  D +I+  I +   D  +L +L         I 
Sbjct: 61   GRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCVEEGFVIQ 120

Query: 306  DADNKCDEF-RKG------RNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKA 358
            + +   D   R+G         ++Y   +++    P   + EE   T          +KA
Sbjct: 121  EREVALDFIGRRGVLGIRREKRIQYAKDILQKELLP-NITQEEGFET----------RKA 169

Query: 359  RFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRD 418
             FLGYMV  LL     R++ D+RD F  KRL+LAG LL    ++      K +   +QR 
Sbjct: 170  FFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLAGLFRILFKKLTKDIYNYMQRC 229

Query: 419  LYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVD 478
            +  D     +   + +  +T+GL  + +TG W    K     +G+   L R     TL  
Sbjct: 230  VENDSDFN-LTLAVKSQTITDGLRYSLATGNWGEQRKAMSSRAGVSQVLNRYTYSSTLSH 288

Query: 479  LRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPI 537
            LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  S  EPI
Sbjct: 289  LRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGSSSEPI 348

Query: 538  FEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVE 597
               L + G+E L D    +     ++FV+G W+GV +D    V  +R  RR  ++  +V 
Sbjct: 349  LGFLRDFGLEVLEDYVPSNAPDSTRIFVNGVWVGVHRDPAQLVDYVRDLRRSGDISPEVS 408

Query: 598  IKRDELQSEVRIFMDAGRILRPLLVV----------------ENMGKIKSLE-------- 633
            I RD  + E +IF DAGR+ RPL +V                E++ K+ + +        
Sbjct: 409  IIRDIREKEFKIFTDAGRVYRPLFIVDDNEDSPTKGDLMITKEHIRKLVAEDMDDDELEE 468

Query: 634  ------GKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYL------------------- 668
                   + YT+ +L+  GI+  V  EEEE    A     +                   
Sbjct: 469  DEEGGESRKYTWSSLVSEGIVVYVDAEEEETIMIAMSPDDVKASKSTMSESEQQELQLQE 528

Query: 669  --------LKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQA 720
                    +K         +THCE+  S +LG++  IIPF +H+ + R  YQS     QA
Sbjct: 529  QELDPAKRIKPTTSSNTHTYTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAM-GKQA 587

Query: 721  IGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVA 780
            +G   TN S+R+DT+++ L+YPQ+PL  T   +            L   EL  GQNA+VA
Sbjct: 588  MGVFLTNYSVRMDTMANILYYPQKPLATTRSME-----------YLKFRELPAGQNAVVA 636

Query: 781  VNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQV----KRRSSDDMVNFG 836
            +  + GYNQEDS++MN++S++RG+FRS   RSY      + M++    ++ S  D +   
Sbjct: 637  IACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDLEKRQGMKLLETFEKPSRSDTLRL- 695

Query: 837  KIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKY----AD-----------SGADHSIKL 881
                K G  + LD+DG    G  +   DI+IGK     AD           S  D S  L
Sbjct: 696  ----KHGTYEKLDEDGLIAPGIRVSGEDIIIGKTTPIPADTEELGQRTLHHSKRDASTPL 751

Query: 882  KHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPF 941
            + TE G+V +V+L++N DG  F  V +R  + P +GDKF+S HGQKG +G     E+ PF
Sbjct: 752  RSTESGIVDQVLLTTNGDGSKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPF 811

Query: 942  TIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAI 1001
            + +GIVPD++INPHA PSR T   L+E  L K +++L     SG +  A+PF   + +AI
Sbjct: 812  SAEGIVPDLIINPHAIPSRMTVAHLIECLLSK-VSSL-----SGFEGDASPFTDVTAEAI 865

Query: 1002 TEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLT 1061
             + L   G+   G E +Y+G TG+ + + +F GPT+YQRL HM +DK+  R  GPV  LT
Sbjct: 866  AKLLREHGYQSRGFEVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLT 925

Query: 1062 RQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQR 1121
            RQPV  R R GG++FGEMERDC+IAHGAA  L ERL   SD++++H+C  C  + +VI  
Sbjct: 926  RQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGMC-GLMSVIAN 984

Query: 1122 VVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSM 1162
            +     K     CR C +  +I + ++PY AKLL QE  SM
Sbjct: 985  L-----KKNQFECRSCKNKTNIYQIHIPYAAKLLFQEFMSM 1020


>gi|301616295|ref|XP_002937598.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Xenopus
            (Silurana) tropicalis]
          Length = 1151

 Score =  523 bits (1346), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 400/1254 (31%), Positives = 589/1254 (46%), Gaps = 199/1254 (15%)

Query: 2    DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-D 60
            D DD+  T      DL +E     C     S+F+E GLV  Q++S++EFI+  +Q+   D
Sbjct: 11   DEDDDEITP-----DLWQEA----CWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61

Query: 61   SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
            +    +       + + E   RY  ++F Q+ L KP+ +  +G     M P  ARL+N+T
Sbjct: 62   APPIDLQAEAQHTTGEVEEPPRYL-LKFEQIYLSKPTHWERDGAPS-PMMPNEARLRNLT 119

Query: 121  YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
            YS+ + V +          T    K G EQ      +  +     IG+IP+M++S  C +
Sbjct: 120  YSAPLYVDI----------TKTVVKEGEEQ------IQTQHQKTFIGKIPIMLRSTYCLL 163

Query: 181  KGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR 234
             G+      E  +C  D GGYFII G+EKV +AQE++    ++V        AY +E + 
Sbjct: 164  NGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTAECRS 223

Query: 235  N-------------RLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDK 281
                           ++ R    +K   I G   V ++ ++  E+PI I+F ALG  SD+
Sbjct: 224  CLENSSRPTSSIWVSMLARGGQGAKKSAI-GQRIVATLPYIKQEVPIIIVFRALGFVSDR 282

Query: 282  EIVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKL 327
            +I+  I +  ED  ++ ++  S+ +A      N    F   R A         +KY  ++
Sbjct: 283  DILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEV 342

Query: 328  IKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNK 387
            ++    P    ++ C             +KA FLGYMV  LL A  GRR+ D+RD + NK
Sbjct: 343  LQKEMLPHVGVSDFC-----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNK 391

Query: 388  RLELAGELLERELKVHIAHARKRMAKALQRD--LYGDRTVR-----PIEYYLDASILTNG 440
            RL+LAG LL        A   + M K L ++  +Y  + +       +E  +   I+++G
Sbjct: 392  RLDLAGPLL--------AFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDG 443

Query: 441  LSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHP 500
            L  + +TG W    K  +  +G+   L R     TL  LRR    +   GK+   R  H 
Sbjct: 444  LKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHN 503

Query: 501  SHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGG 559
            + WG +C   TP+G   GLVKNL +   +S  S   PI E L    ME L + +  ++  
Sbjct: 504  TLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIAD 563

Query: 560  KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKE-LPTQVEIKRDELQSEVRIFMDAGRILR 618
              K+FV+G W+G+ KD    ++ LR+ RR+ + + ++V + RD  + E+RI+ DAGRI R
Sbjct: 564  ATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICR 623

Query: 619  PLLVVE---------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLL 669
            PLL+VE         ++ ++K  E  NY++Q L+  G++E + T EEE    A       
Sbjct: 624  PLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTP---- 679

Query: 670  KDIEDKKPI---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTT 726
             D+++K       +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   T
Sbjct: 680  DDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYIT 738

Query: 727  NPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLG 786
            N  +R+DTL+H L+YPQ+PL  T   +            L   EL  G N+IVA      
Sbjct: 739  NFHVRMDTLAHVLYYPQKPLVTTRSME-----------YLRFRELPAGINSIVAXXXXXX 787

Query: 787  YNQED--------SLVMN----RASLERGMFRSEHIRSYKAEVDNKEMQVK--RRSSDDM 832
                         SL  N        E   +RS   +  K   D +E+  K  R +   M
Sbjct: 788  XXXXXXXXXXXHISLATNIKHPSECQESVFYRSYKEQESKKGFDQEEVFEKPTRETCQGM 847

Query: 833  VNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD---------------SGADH 877
                    +    D LDDDG    G  +   D++IGK                  +  D 
Sbjct: 848  --------RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDC 899

Query: 878  SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQE 937
            S  L+ +E G+V +V+++ N +G  F  +                               
Sbjct: 900  STFLRTSETGIVDQVMVTLNQEGYKFCKI------------------------------R 929

Query: 938  NFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP- 996
            + PFT +GI PDI+INPHA PSR T G L+E   GK   +  KG        ATPF    
Sbjct: 930  DMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGK--VSANKGEIGD----ATPFNDAV 983

Query: 997  SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGP 1056
            +V  I+  L   G+   G E LY+G TG  + S IFIGPT+YQRL HM +DK+  R  GP
Sbjct: 984  NVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGP 1043

Query: 1057 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVA 1116
            +  L RQP+  R R GG++FGEMERDC IAHGAA  L ERLF  SD YQ+H+C  C  +A
Sbjct: 1044 IQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMA 1103

Query: 1117 NVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
                       +     CR C +   I    +PY  KLL QEL SM I  +  T
Sbjct: 1104 I-------ANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMT 1150


>gi|159487647|ref|XP_001701834.1| DNA-directed RNA polymerase II, 135 kDa polypeptide [Chlamydomonas
            reinhardtii]
 gi|158281053|gb|EDP06809.1| DNA-directed RNA polymerase II, 135 kDa polypeptide [Chlamydomonas
            reinhardtii]
          Length = 1634

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 365/1140 (32%), Positives = 559/1140 (49%), Gaps = 141/1140 (12%)

Query: 31   VSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP--GYDPSKKGEGEWRYASMRF 88
             +FF++ GLV  Q++S+NEF+   +Q+  D   E +++P   + P  +   E  Y  ++F
Sbjct: 30   TAFFDDKGLVRQQLDSFNEFVNVTIQEIIDETPEIVIKPESQHLPGVEAAEEKEYI-IKF 88

Query: 89   GQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGR 148
            GQV L +P     +G +   +FP+ ARL+N+TY + + V V    YT  RV  ++ +   
Sbjct: 89   GQVYLSRPQITEQDG-ESVVLFPKEARLRNLTYCAPLYVDVTKTEYT--RVGENEVEEKT 145

Query: 149  EQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM-------KGVEKGDCDF----------- 190
            E +          +++ +G++P+M+KS+ C +       +    G+  F           
Sbjct: 146  ETF----------SHVHLGKVPIMLKSERCNLHEASTEQEATNLGESYFGAAACLIVGTC 195

Query: 191  -----------------------------DHGGYFIIKGAEKVFVAQEQICLKRLWV--- 218
                                           GGYF+I G+EKV +AQE++    ++V   
Sbjct: 196  PGIAHQLAPPLTPLTPALAAPTRSASSAHPQGGYFVINGSEKVLIAQERMANNHVYVFKK 255

Query: 219  SNSMGWT-------VAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWIL 271
            S    +T       V   S    + + + ++   K     G  +   + ++  E PI+IL
Sbjct: 256  SQPSKYTFCAEIRSVVEGSTRSASSMSIMMLAKGKKAGAAGVIRA-QIPYIRAEFPIFIL 314

Query: 272  FFALGVSSDKEIVNLIDFTCE-DCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKG 330
            F ALG  SD++I+  I +  + D ++L  L +S+ +A     E +    AL Y+ K  +G
Sbjct: 315  FRALGFVSDRDILEHIVYDLDADPAMLEALRSSVEEAQ----EVQTQEEALNYLGK--RG 368

Query: 331  TTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLE 390
            T      +++E M T          +K  F+GYMV  L+    GRR  D+RD + NKRL+
Sbjct: 369  TV---TGASKEFMET----------RKGYFVGYMVHRLMLVALGRRPEDDRDHYANKRLD 415

Query: 391  LAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAW 450
            L G L+    ++      K +    QR +   + +  I    D  ++T GL  + +TG W
Sbjct: 416  LGGPLMAGLFRLLFRKLCKELRMQAQRMVDAGKEINVISAIND-KVITRGLKYSLATGNW 474

Query: 451  SHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLS 510
                K+  R +G+   L R     TL  LRR    +   GK+   R  H S WG  C   
Sbjct: 475  GEQGKQGIR-AGVSQVLARLTYASTLSHLRRVNSPIGREGKLAKPRQLHNSLWGIFCPAE 533

Query: 511  TPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDW 569
            TP+G+  GLVKN+ +   ++      P+   L     E L +     +    KVF++G W
Sbjct: 534  TPEGQAVGLVKNMALMCYITVGTPSLPVVAHLEEFNTEALDEVTPADIAASTKVFINGVW 593

Query: 570  IGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---- 625
            +G+ +D  + +  LR  RR+    T+V I  D    E+RIF D GR  RPL + E+    
Sbjct: 594  LGIQRDPTALIKNLRAMRRQVAFSTEVAIIYDGPLKELRIFTDYGRASRPLYICEDNRLL 653

Query: 626  --MGKIKSL-----EGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYL--LKDIEDKK 676
                 I+ L     +   Y +  L+  G++E +  EEEE    A  I  L   ++     
Sbjct: 654  VSKHHIRRLISPLPDEDEYAWPQLVQDGLVEYIDAEEEETTMIAMTIADLRNAREAGAAT 713

Query: 677  PIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLS 736
               +THCE+  + +LG+   IIPF +H+ + R  YQS     QA+G   TN   R+DT  
Sbjct: 714  GTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAM-GKQAMGMYATNYQTRMDTQG 772

Query: 737  HQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMN 796
              L+YPQ+PL  T   D            L   EL  G NAIVA+  + GYNQEDSL++N
Sbjct: 773  FVLYYPQKPLVCTRAMD-----------YLKFRELPAGINAIVAIMCYSGYNQEDSLMLN 821

Query: 797  RASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFI 856
             +S++RG  RS   R+YK E + K   + R   +        + K G  D LD DG    
Sbjct: 822  GSSIDRGFHRSIFYRAYKEE-EKKAGSMAREEIEAPDPSVTSKMKHGTYDKLDADGLCPP 880

Query: 857  GANLQSGDIVIGKYAD-----SGA-------DHSIKLKHTERGMVQKVVLSSNDDGKNFS 904
            G  +   DI+ GK        +GA       D S+ L+  E G++ +V+L++ND+G+ F 
Sbjct: 881  GTRVSGEDIICGKTVTLPDDPTGAVQRFTKKDASLALRGHEAGVIDQVMLTTNDEGQKFV 940

Query: 905  VVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPG 964
             + +R +  P +GDKF+S HGQKG  G   + E+ PFT +GIVPDI++NPHA PSR T G
Sbjct: 941  KIRVRTICIPQVGDKFASRHGQKGTCGITYTMEDMPFTAEGIVPDIIVNPHAIPSRMTIG 1000

Query: 965  QLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTG 1024
             L+EA + K  + +G       +  ATPF   +VD +++ LH  G+ + G E +Y G TG
Sbjct: 1001 HLVEALMSKVASLMGS------EGDATPFTKVTVDNVSQMLHDLGYQRRGWEVMYSGHTG 1054

Query: 1025 EMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL 1084
              +R+ IF+ PT+YQRL HM + K+  R  GPV  LTRQP   R R GG++FGEMERDCL
Sbjct: 1055 RQLRAQIFLNPTYYQRLKHMVDFKIHSRGRGPVQVLTRQPAEGRARDGGLRFGEMERDCL 1114



 Score = 60.1 bits (144), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 11/92 (11%)

Query: 1082 DCLIAHGAAANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDS 1139
            +C+I+HGAAA L ERLF  SD+Y++H+C +     VAN+         K +     I   
Sbjct: 1543 NCIISHGAAAFLKERLFDQSDAYRIHVCERSGLIAVANL---------KKQQFTSTIYKD 1593

Query: 1140 GDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
            G +I +  +PY  KLL QEL +M I  +   E
Sbjct: 1594 GSNIYQVYIPYACKLLFQELMAMCIAPRMQFE 1625


>gi|227828173|ref|YP_002829953.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus M.14.25]
 gi|229585402|ref|YP_002843904.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus M.16.27]
 gi|238620363|ref|YP_002915189.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus M.16.4]
 gi|385773843|ref|YP_005646410.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus HVE10/4]
 gi|385776478|ref|YP_005649046.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus REY15A]
 gi|227459969|gb|ACP38655.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus M.14.25]
 gi|228020452|gb|ACP55859.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus M.16.27]
 gi|238381433|gb|ACR42521.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus M.16.4]
 gi|323475226|gb|ADX85832.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus REY15A]
 gi|323477958|gb|ADX83196.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus HVE10/4]
          Length = 1131

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 381/1208 (31%), Positives = 589/1208 (48%), Gaps = 167/1208 (13%)

Query: 28   KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVE-PGYDPSKKGEGEWRYASM 86
            K   ++F   GLV   ++SYN+F++N LQ+  D  GE   E PG               +
Sbjct: 15   KVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEIPTEIPGL-------------KV 61

Query: 87   RFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKT 146
            R G++ + KP     + G E ++ P  ARL+N+TY++ + +       T   V ++    
Sbjct: 62   RLGKIRIGKPRVRESDRG-EREISPMEARLRNLTYAAPLWL-------TMIPVENN---- 109

Query: 147  GREQYIQKEVLSDETTNIIIGRIPVMVKSDL------CWMKGVEKGDCDFDHGGYFIIKG 200
                      +  E   + IG +P+M+KS +         K +E G+   D GGYFI+ G
Sbjct: 110  ----------IEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNG 159

Query: 201  AEKVFVAQEQICLKRLWVS-----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEK 255
            +E+V V QE +   R+ V      +++  T    S     R+ V +      E +K G  
Sbjct: 160  SERVIVTQEDLAPNRVLVDTGKTGSNITHTAKIISSTAGYRVPVTI------ERLKDGTF 213

Query: 256  VLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFR 315
             +S   +  +IP  IL  ALG+ +D++IV  +     D  I N LF S+  A +  +   
Sbjct: 214  HVSFPAVPGKIPFVILMRALGILTDRDIVYAVSL---DPEIQNELFPSLEQASSIANV-- 268

Query: 316  KGRNALKYVDKLIKGTTFPPG-------ESTEECMNTYLFPSLHGT----KQKARFLGYM 364
               +AL ++     G+    G       E  ++ ++ Y  P L  +    ++KA +L Y 
Sbjct: 269  --DDALDFI-----GSRVAIGQKRENRIEKAQQIIDKYFLPHLGTSADDRRKKAYYLAYA 321

Query: 365  VKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRT 424
            +  +++ Y GRR+ D++D + NKRL LAG+L     +V      K +   L++     R 
Sbjct: 322  ISKVIELYLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKSKVRGRK 381

Query: 425  VRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQ 484
            +  ++  +   I+T  +  A +TG W     RT    G+   L R N L  L  LRR   
Sbjct: 382  L-ALKALVRPDIVTERIRHALATGNWVG--GRT----GVSQLLDRTNWLSMLSHLRRVIS 434

Query: 485  QVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQ-LFN 543
             +       +AR  H + WG++C   TP+G N GLVKNL +   ++  I E I E+ L+ 
Sbjct: 435  SLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALMAQIAVGINERIVEKTLYE 494

Query: 544  SGMEKLADDA-SYSLGGK--------FKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPT 594
             G+  + +     + GG+         KV ++G  +G  +D      ++R +RR  E+  
Sbjct: 495  MGVVPVEEVIRRVTEGGEDQNEYLKWSKVILNGRLVGYYRDGEELAKKIRERRRNGEISD 554

Query: 595  QVEIKR--DELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHG 646
            +V +     +  +EV +  D+GR+ RPL++V N         I+ L+  + TF  L+  G
Sbjct: 555  EVNVGHIVTDFINEVHVNCDSGRVRRPLIIVSNGNPLVTREDIEKLDSGSITFDDLVRQG 614

Query: 647  IIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHA 706
             IE +  EEEE+        Y+  +  D  P + TH E+    +LG++  IIP+  H+ +
Sbjct: 615  KIEYLDAEEEENA-------YVALEPSDLTP-EHTHLEIWSPAILGITASIIPYPEHNQS 666

Query: 707  RRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHIL 766
             R  YQS   + QA+G    N  +R DT +H L YPQRPL +T   D +G          
Sbjct: 667  PRNTYQS-AMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQTRALDIIGYTN------- 718

Query: 767  PRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKR 826
             RP    G NAI+AV    GYN EDS++MNR+S+ERGM+RS   R Y  E    E++   
Sbjct: 719  -RPA---GNNAILAVISFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTE----EVKYPG 770

Query: 827  RSSDDMVN--------FGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA------- 871
               D +V          GK   ++     L+D+G       ++ GD++IGK +       
Sbjct: 771  GQEDKIVMPEPGVRGYKGKEYYRL-----LEDNGVVSPEVEVKGGDVLIGKVSPPRFLQE 825

Query: 872  -------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMH 924
                    +  D SI  +H E G+V  V+++   +G     V +R +R P +GDKF+S H
Sbjct: 826  FKELSPEQAKRDTSIVTRHGEMGIVDLVLITETAEGNKLVKVRVRDLRIPSIGDKFASRH 885

Query: 925  GQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICS 984
            GQKGV+G L  Q + P+T++G+VPD+++NPHA PSR T GQ++E   GK  AAL   I  
Sbjct: 886  GQKGVIGMLIPQVDMPYTVKGVVPDVILNPHALPSRMTLGQIMEGIAGK-YAALSGNIVD 944

Query: 985  GLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHM 1044
                 ATPF    ++ +  ++ + G+    TE  YDGRTG+ ++S I+ G  +YQ+L HM
Sbjct: 945  -----ATPFYKTPIEQLQNEILKYGYLPDATEVTYDGRTGQKIKSRIYFGVVYYQKLHHM 999

Query: 1045 SEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSY 1104
              DK+  R  GPV  LTRQP   R R GG++FGEMERDCLI  G A  L +RL   SD  
Sbjct: 1000 VADKIHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLIGFGTAMLLKDRLLDNSDRT 1059

Query: 1105 QMHICRKCKNVANVIQRVVGGGRKVRGPY-CRICDSGDDIVKANVPYGAKLLCQELFSMG 1163
             +++C +C          +G   K +  Y C I     ++    V Y  KLL QEL SM 
Sbjct: 1060 TIYVCDQCG--------YIGWYDKNKNKYICPIHGDKSNLFPVTVSYAFKLLIQELMSMI 1111

Query: 1164 ITLKFDTE 1171
            I+ +   E
Sbjct: 1112 ISPRLILE 1119


>gi|45545323|gb|AAS67509.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Cryptococcus neoformans]
          Length = 1114

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 364/1105 (32%), Positives = 566/1105 (51%), Gaps = 134/1105 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            SFF E GLV  Q+ S+NEFI+  +Q+  D      ++     +     E R   + FGQ+
Sbjct: 51   SFFEEKGLVRQQLESFNEFIETTMQEIVDDHSRLTLDQFTQYTGVAGDETRRYEISFGQI 110

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             L + +    +G     +FP+ ARL+N+TYS+ + V ++ +  T   V  D  +   +  
Sbjct: 111  YLARVNHTEMDGRTNM-LFPQEARLRNLTYSAPLYVDIKKRTLTASGV-DDPVEADWQPA 168

Query: 152  I--QKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFIIKGAEK 203
            +    EV   E     IG++PVMV+S+ C + G+      E G+C +D GGYFII G+EK
Sbjct: 169  VGDDGEVEGAEEEKTSIGKVPVMVRSNFCLLHGLPDDQCHEIGECPYDQGGYFIISGSEK 228

Query: 204  VFVAQEQICLKRLWV-----SNSMGWTVAYKSENKR-----NRLIVRLVDMSKFEDIKGG 253
            V +AQE++    ++V          +     S+ ++     N   VR+   ++     GG
Sbjct: 229  VLIAQERMATNHVFVFLKAAPARFTYFAEINSQKEKGGRVANHTEVRM--YARASGTTGG 286

Query: 254  EKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDE 313
               +S+ +   +IP+ ++F ALG+  D+++++ I F  ED ++L +L  SI ++    D 
Sbjct: 287  VIRVSLPYTKVDIPLVVVFRALGIVPDRDVLSHICFGAEDEALLEMLQPSIEESFAVQDR 346

Query: 314  FRKGRNALKYVDKLIKGTTFPPGE---STEECMNTYLFPSLHGTK----QKARFLGYMVK 366
                  AL ++ +  +    P  +   +  + ++    P +   +    +KA FLGYMV 
Sbjct: 347  ----DTALDFIGRRGQHEKAPRAQRQRAAFDILHKEFLPHVSTAEGFESKKAYFLGYMVH 402

Query: 367  CLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR 426
             L  A  GRR+ D+RD F NKRL+LAG L+     V     R+ M + L++ +  ++   
Sbjct: 403  RLCMAALGRRELDDRDHFGNKRLDLAGPLMAEMFNVVFGKLREDMYRYLKKCVEQNK--- 459

Query: 427  PIEYYLDASI----LTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
              E+ L+ +I    +T+GL  A +TG W    KR    +G+   L       TL  LRRT
Sbjct: 460  --EFALNMAIRPNTITDGLKYALATGNWG---KRDNTRAGVSQVLNSYTFTSTLSHLRRT 514

Query: 483  RQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQL 541
               +    K    R  H +HWG +C   TP+G  CGLVKNL +   +S  S   P+ E L
Sbjct: 515  NTPIGRDSKAAKPRQLHDTHWGMVCPAETPEGSACGLVKNLALMSYISVGSYSAPVMEFL 574

Query: 542  FNSGMEKLAD--DASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIK 599
               G+E L++  DA  +     KVFV+G W+G+ +D+ +  + L + RR  +L  +V I 
Sbjct: 575  EEWGLEDLSEYQDAPTAT----KVFVNGVWMGIHRDAPTLHNNLLQMRRGGQLKYEVSIV 630

Query: 600  RDELQSEVRIFMDAGRILRPLLVVE-----------NMGKIKSLEGKNY---TFQALLDH 645
            RD  + E+R++ DAGR+ RPL +V+           ++ +I  +  +      +  LL  
Sbjct: 631  RDIRERELRLYTDAGRVCRPLFIVDQPTQTLRLKRDHIDRIDQMADEGLLSGAWDKLLSE 690

Query: 646  GIIELVGTEEEE------------DCCTAWGIKYLLKD-----IEDKKPI---------- 678
            GI+E V   EEE            +  TA     L++D     +E   P           
Sbjct: 691  GIVEYVDAAEEETILIAMTPEDLVNARTAHSKHELVRDRAAHNLESFDPAARIKSTVWSQ 750

Query: 679  KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQ 738
            ++TH E+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DT+ + 
Sbjct: 751  QYTHMEIHPSMILGVCASIIPFPDHNQSPRNTYQSAM-GKQAMGVCLTNYQLRMDTMVNV 809

Query: 739  LFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRA 798
            L+YPQ+PL  T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++
Sbjct: 810  LYYPQKPLATTRSME-----------YLKFSELPAGQNAIVAIMCYSGYNQEDSVIMNQS 858

Query: 799  SLERGMFRSEHIRSYKAEVDNKEMQ--VKRRSSDDMVNFGKIQSKIG---RVDSLDDDGF 853
            S++RG+FRS + RSY    D ++M+  VK  + +       ++ K G   R   LD DG 
Sbjct: 859  SIDRGLFRSLYFRSY---TDTEKMKGMVKAETIEKPDRNETLRMKHGTGDRYAKLDVDGL 915

Query: 854  PFIGANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSND 898
               G N+   DI+IGK A                +  D S  LK TE+G+V +V+LS+N 
Sbjct: 916  VAPGTNVNGDDILIGKTAPLPEDSEELGQRTQLHTKRDISTPLKSTEQGVVDQVMLSTNG 975

Query: 899  DGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFP 958
            +G  F  + +R  R P +GDKF+S HGQKG +G    QE+ PFT +G+VPDI+INPHA P
Sbjct: 976  EGNMFVKIRVRSTRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGLVPDIIINPHAIP 1035

Query: 959  SRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERL 1018
            SR T G L+E  L K ++ L     +G +  ATPF   +V+A+++ L   G+   G E L
Sbjct: 1036 SRMTIGHLVECLLSK-VSTL-----TGAEGDATPFTELTVEAVSKVLRAKGYQSRGFELL 1089

Query: 1019 YDGRTGEMVRSLIFIGPTFYQRLIH 1043
            Y G TG  +++ ++ GPT+YQRL H
Sbjct: 1090 YHGHTGRKLQAQVYFGPTYYQRLKH 1114


>gi|57641018|ref|YP_183496.1| DNA-directed RNA polymerase subunit B [Thermococcus kodakarensis
            KOD1]
 gi|57159342|dbj|BAD85272.1| DNA-directed RNA polymerase, subunit B [Thermococcus kodakarensis
            KOD1]
          Length = 1123

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 385/1201 (32%), Positives = 599/1201 (49%), Gaps = 178/1201 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVE-PGYDPSKKGEGEWRYASMRFGQ 90
            S++ E G V   ++SYN FI +GLQ   + FGE + + P +              ++FG+
Sbjct: 23   SYWKEKGFVRQHLDSYNAFIDHGLQDVVNEFGEVVPDIPNF-------------KVKFGK 69

Query: 91   VTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
            + + +P F    G     ++P  AR++N+TYS+ + +++   V             G EQ
Sbjct: 70   IRIGQPEFQEAQG-QRRPLYPMDARIRNLTYSAPLYLEMIPVV------------NGIEQ 116

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKV 204
                     E   + IG +P+M+KS  C + G      ++ G+   D GGYFII G+E+V
Sbjct: 117  ---------EPVEVRIGELPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFIINGSERV 167

Query: 205  FVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVD-------MSKFEDIKGGEKVL 257
             V+ E +   +  V          + + ++N+++ ++         +   E  K G  +L
Sbjct: 168  IVSIEDLAPNKTLV----------ERDERQNKVVAKVFSYRHGYRALITVERKKDG--IL 215

Query: 258  SVYFLSTEIPIWILFF--ALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFR 315
             V   +   P+  ++   ALG+ +DKEIV  +    +D  I  +LF ++ DA +   +  
Sbjct: 216  YVTIPNVPKPVKFVYVMRALGLLTDKEIVEAV---SDDPRIQQVLFDNLEDASDISTQ-- 270

Query: 316  KGRNALKYVDKLIKGTTFPPGES-------TEECMNTYLFPSL----HGTKQKARFLGYM 364
                AL Y+ +L       PG+         E  ++  L P +       + KA +LG M
Sbjct: 271  --EEALDYIGRLAL-----PGQPKEYRLRRAEHIIDNNLLPHMGVDPENRRAKAYYLGMM 323

Query: 365  VKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARK----RMAKALQRDLY 420
               +L+   G R  D++D + NKRL+LAG+LL+   +V      K    +M K  QR   
Sbjct: 324  ALKVLELSLGLRGEDDKDHYANKRLKLAGDLLKDLFRVAFGQLVKDMQYQMTKTYQRK-- 381

Query: 421  GDR-TVRPIEYYLDASI----LTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQT 475
            G+R T   I+ ++  SI    L+  +  A +TG+W  P  RT    G+   L R N + T
Sbjct: 382  GERYTFENIQRFVRNSIRPDVLSERIEHALATGSW--PGGRT----GVSQLLDRTNYMST 435

Query: 476  LVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE 535
            L  LRR    +       +AR  H +HWG+IC   TP+G NCGLVKNL +   ++T I E
Sbjct: 436  LSHLRRVTSPLSRDQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMSQITTGIPE 495

Query: 536  -PIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELP- 593
              + E L   G+  + +       G ++V+++G  IG  +D    V  +R  RR  ++  
Sbjct: 496  REVREYLMKMGVVPIEERRPAP--GLYRVYLNGVLIGTVEDGRKLVERIRADRRAGKISD 553

Query: 594  -TQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDH 645
               V +  DE   EV I  D GR+ RPL+VVEN GK       ++ ++    T+  L+  
Sbjct: 554  VINVALYEDEEVKEVYINSDDGRVRRPLIVVEN-GKPKLTREHVEGIKNGTLTWSDLIRM 612

Query: 646  GIIELVGTEEEEDCCTA---WGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFAN 702
            G+IE +  EEEE+   A   W +             + TH EL  + +LG+   ++P+  
Sbjct: 613  GVIEYLDAEEEENAYVATWPWEVTE-----------EHTHLELMPAAILGIPASLVPYPE 661

Query: 703  HDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGH 762
            H+ A R  Y +   + Q++G    N  IRVDT  H + YPQ PL  + I   +G      
Sbjct: 662  HNAAPRNTYGA-GMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVG------ 714

Query: 763  NHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEM 822
                 RP    GQN +VAV  + GYN ED++++N+AS+ERG+ RS   R+Y+AE   ++ 
Sbjct: 715  --FEDRPA---GQNFVVAVLSYHGYNMEDAVIINKASIERGLARSTFFRTYEAE---EKR 766

Query: 823  QVKRRSSDDMVNFGKIQSKIGR--VDSLDDDGFPFIGANLQSGDIVIGKYA--------- 871
             +  +  +  V    IQ  +G      LD+DG  F  + ++  D+++G+ +         
Sbjct: 767  YLGGQKDNFEVPSPNIQGYLGEKYYRHLDEDGLIFPESKVEGKDVLVGRTSPPRFIEEQS 826

Query: 872  -------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMH 924
                       + S+ ++ +E+G+V KV+++   DG     V++R +R P LGDKF+S H
Sbjct: 827  SLGSMVLQGRRETSVTVRPSEKGVVDKVIVTETGDGTKLVKVTVRDLRIPELGDKFASRH 886

Query: 925  GQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICS 984
            GQKGV+G +  QE+ P+T  GIVPD+++NPH  PSR T GQL+EA  GK +A+L     +
Sbjct: 887  GQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGK-VASL-----T 940

Query: 985  GLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHM 1044
            G +   T F     + + ++L   GF   G E +YDG TG  + + IFIG  +YQRL HM
Sbjct: 941  GRRVDGTAFIGEPEEKLRKELEELGFKHSGREIMYDGITGRRLEADIFIGVIYYQRLHHM 1000

Query: 1045 SEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSY 1104
              DK+  R+ GPV  LT+QP   R R GG++FGEMERD LI HGAA  L ERL   SD  
Sbjct: 1001 VADKMHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLIGHGAAMLLIERLLEESDKT 1060

Query: 1105 QMHICRKCKNVANVIQRVVGGGRKVRGP-YCRICDSGDDIVKANVPYGAKLLCQELFSMG 1163
            ++ +C  C ++A   +R        RG  YC +C   + I K  + Y  KLL  EL +M 
Sbjct: 1061 EVWVCESCGHLALEDKR--------RGKVYCPVCGEDERISKVEMSYAFKLLLDELKAMV 1112

Query: 1164 I 1164
            I
Sbjct: 1113 I 1113


>gi|68131914|gb|AAY85235.1| RNA polymerase II second largest subunit [Tetracentron sinense]
          Length = 951

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 339/994 (34%), Positives = 525/994 (52%), Gaps = 108/994 (10%)

Query: 109  MFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGR 168
            +FP+ ARL+N+TYS+ + V V       KR+     K G +   ++   + E T + IG+
Sbjct: 5    LFPKAARLRNLTYSAPLYVDVT------KRI----IKKGHD--CEEVTETQEFTKVFIGK 52

Query: 169  IPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV---- 218
            +P+M++S  C +         E G+C +D GGYFII G+EKV +AQE++    ++V    
Sbjct: 53   VPIMLRSSYCTVYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 112

Query: 219  -SNSMGWTVAYKS-ENKRNR----LIVRLVDMSKFEDIKGGEKV-LSVYFLSTEIPIWIL 271
              N   +    +S    +NR    + VR++  +  +    G+ +  ++ ++ TEIPI I+
Sbjct: 113  QPNKYAYVAEVRSMAESQNRPPSGMFVRMLSRASAKGGSSGQYIRATLPYIRTEIPIIIV 172

Query: 272  FFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGT 331
            F ALG  +DK+I+  I +   D  ++ +L  S+ +A       +  + AL Y+ K  +G+
Sbjct: 173  FRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAF----VIQNQQVALDYIGK--RGS 226

Query: 332  TFPPGESTE-------ECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRRKCDN 380
            T   G + E       E +   + P +    +   +KA + GY++  LL    GRR  D+
Sbjct: 227  TV--GVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCAIGRRPEDD 284

Query: 381  RDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNG 440
            RD + NKRL+LAG LL    ++      + +   +Q+ +   + V  +++ + A  +T+G
Sbjct: 285  RDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVN-LQFAIKAKTITSG 343

Query: 441  LSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHP 500
            L  + +TG W        R +G+   L R     TL  LRR    +   GK+   R  H 
Sbjct: 344  LKYSLATGNWGQANAAGTR-AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHN 402

Query: 501  SHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGG 559
            SHWG +C   TP+G+ CGLVKNL +   ++  S   PI E L     E   + +   +  
Sbjct: 403  SHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQ 462

Query: 560  KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRP 619
              K+FV+G W+G+ ++    V  LR+ RR+ ++ T+V + RD    E+R++ D GR  RP
Sbjct: 463  ATKIFVNGCWVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRP 522

Query: 620  LLVVENM------GKIKSLEGKNYT----FQALLDHGIIELVGTEEEEDCCTAWGIKYLL 669
            L +VE          I++L+ +       +  L+  G IE V TEEEE    +  I  L+
Sbjct: 523  LFIVEKQRLLIKKKDIRALQQRESPEEGGWHDLVAKGYIEYVDTEEEETTMISMTINDLI 582

Query: 670  K---DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTT 726
                + E+     +THCE+  S +LG+   IIPF +H+   R  YQS     QA+G   T
Sbjct: 583  TAKLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQTPRNTYQS-AMGKQAMGIYVT 641

Query: 727  NPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLG 786
            N  +R+DTL++ L+YPQ+PL  T   + L      H   LP      G NAIVA+  + G
Sbjct: 642  NYQLRMDTLAYVLYYPQKPLVTTRAMEHL------HFRQLP-----AGINAIVAIACYSG 690

Query: 787  YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK------IQS 840
            YNQEDS++MN++S++RG FRS   RSY+ E       VK        +FG+      +  
Sbjct: 691  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE-------DFGRPNRENTMGM 743

Query: 841  KIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD-------------SGADHSIKLKHTERG 887
            + G  D LDDDG    G  +   D++IGK                +  DHS  L+H+E G
Sbjct: 744  RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDESQGQASRYTRRDHSTSLRHSESG 803

Query: 888  MVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIV 947
            MV +V+L++N DG  F  V +R +R P +GDKFSS HGQKG +G   +QE+ P+T++GI 
Sbjct: 804  MVDQVLLTTNADGLRFVKVRMRSIRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 863

Query: 948  PDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHR 1007
            PDI++NPHA PSR T GQL+E  +GK  A +GK      +  ATPF   +VD I++ LH+
Sbjct: 864  PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK------EGDATPFTDVTVDNISKALHK 917

Query: 1008 AGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRL 1041
             G+   G E +Y+G TG  + ++IF+GPT+YQRL
Sbjct: 918  CGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRL 951


>gi|70794972|gb|AAZ08460.1| RNA polymerase II second largest subunit [Eschscholzia californica]
          Length = 951

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 341/994 (34%), Positives = 526/994 (52%), Gaps = 108/994 (10%)

Query: 109  MFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGR 168
            +FP+ ARL+N+TYS+ + V V       KR+     K G +   ++   + + T + IGR
Sbjct: 5    LFPKAARLRNLTYSAPLYVDVT------KRI----IKKGHD--CEEVAETQDFTKVFIGR 52

Query: 169  IPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV---- 218
            +P+M++S  C +         E G+C +D GGYFII G+EKV +AQE++    ++V    
Sbjct: 53   VPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 112

Query: 219  -SNSMGWTVAYKS-ENKRNR----LIVRLVDMSKFEDIKGGEKV-LSVYFLSTEIPIWIL 271
              N   +    +S    +NR    + VR++  +  +    G+ +  ++ ++ TEIPI I+
Sbjct: 113  QPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRASAKGGSSGQYIRATLPYIRTEIPIIIV 172

Query: 272  FFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGT 331
            F ALG  +DK+I+  I +   D  ++ +L  S+ +A       +  + AL Y+ K  +G+
Sbjct: 173  FRALGFVADKDILEHICYDFADTQMMELLRPSLEEAF----VIQNQQVALDYIGK--RGS 226

Query: 332  TFPPGESTE-------ECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRRKCDN 380
            T   G + E       E +   + P +    +   +KA + GY++  LL    GRR  D+
Sbjct: 227  TV--GVTREKRIKYAREILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCAIGRRPEDD 284

Query: 381  RDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNG 440
            RD + NKRL+LAG LL    ++      + +   +Q+ +   + V  +++ + A  +T+G
Sbjct: 285  RDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKEVN-LQFAIKAKTITSG 343

Query: 441  LSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHP 500
            L  + +TG W        R +G+   L R     TL  LRR    +   GK+   R  H 
Sbjct: 344  LKYSLATGNWGQANAAGTR-AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHN 402

Query: 501  SHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGG 559
            SHWG +C   TP+G+ CGLVKNL +   ++  S   PI E L     E   + +   +  
Sbjct: 403  SHWGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEISPAVIPQ 462

Query: 560  KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRP 619
              K+FV+G W+G+ ++    V  LR+ RR+ ++ T+V + RD    E+R++ D GR  RP
Sbjct: 463  STKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIHLKELRLYTDYGRCSRP 522

Query: 620  LLVVENM------GKIKSLEGKNYT----FQALLDHGIIELVGTEEEEDCCTAWGIKYLL 669
            L +VE          I++L+ +       +  L+  G IE V TEEEE    +  I  L+
Sbjct: 523  LFIVEKQRLLIKKKDIQALQLRESPEEGGWHDLVAKGFIEYVDTEEEETTMISMTINDLV 582

Query: 670  KDIEDKKPI---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTT 726
                + K      +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   T
Sbjct: 583  SARVNPKEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM-GKQAMGIYVT 641

Query: 727  NPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLG 786
            N  +R+DTL++ L+YPQ+PL  T   + L      H   LP      G NAIVA+  + G
Sbjct: 642  NYQLRMDTLAYVLYYPQKPLVTTRAMEHL------HFRQLP-----AGINAIVAIACYSG 690

Query: 787  YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK------IQS 840
            YNQEDS++MN++S++RG FRS   RSY+ E       +K        +FG+      +  
Sbjct: 691  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLIKE-------DFGRPNRENTMGM 743

Query: 841  KIGRVDSLDDDGFPFIGANLQSGDIVIGKYA-----DSGA--------DHSIKLKHTERG 887
            + G  D LDDDG    G  +   D++IGK       DS          DHS  L+H+E G
Sbjct: 744  RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDSQGQASRYTRRDHSTSLRHSESG 803

Query: 888  MVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIV 947
            MV +V+L++N DG  F  V +R VR P +GDKFSS HGQKG +G   +QE+ P+T++GI 
Sbjct: 804  MVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 863

Query: 948  PDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHR 1007
            PDI++NPHA PSR T GQL+E  +GK  A +GK      +  ATPF   +VD I++ LH+
Sbjct: 864  PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK------EGDATPFTDVTVDNISKALHK 917

Query: 1008 AGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRL 1041
             G+   G E +Y+G TG  + ++IF+GPT+YQRL
Sbjct: 918  CGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRL 951


>gi|357289763|gb|AET73076.1| RNA polymerase II 140 kDa subunit [Phaeocystis globosa virus 12T]
 gi|357292563|gb|AET73899.1| RNA polymerase II 140 kDa subunit [Phaeocystis globosa virus 14T]
          Length = 1202

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 364/1198 (30%), Positives = 573/1198 (47%), Gaps = 126/1198 (10%)

Query: 39   LVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSF 98
            L+ HQI SYN  +   L++    F    +   +D  K+       A +      + +P  
Sbjct: 52   LIRHQIESYNYLVNTQLEQTIAMFNPIRICSEHDWEKEYNLHRLVAHVTLENFNIHRPQV 111

Query: 99   FAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLS 158
            +  NG  +  MFP+ ARL+N TY+  M V +  + YT +           E Y   +  +
Sbjct: 112  YENNGATK-IMFPQEARLRNFTYAGAMTVDLNIK-YTVR---------NGENYKNTQTYN 160

Query: 159  DETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQIC 212
                NI IG++P+M++SD+C +         + G+C  D GGYFII G+EK  +AQE+  
Sbjct: 161  KVLKNIHIGKLPIMLRSDICVLSQYKHLNTDQTGECKMDPGGYFIINGSEKTCLAQERAA 220

Query: 213  LKRLWV----SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIK----GGEKVLSVYFLST 264
              ++       N+  WT   + +   +   +    ++ +   K    G    L +  L  
Sbjct: 221  ENQIACFNISKNNTKWTWNAEMKCIPHWKCISPKQINLYRSTKDNGFGNSIYLQIPRLKN 280

Query: 265  EIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFA---SIHDADNKCDEFRKGRNAL 321
             IP++I+F A  + SDK++   +    +D     +L+    SI DA N C  +    +AL
Sbjct: 281  PIPLFIIFRAFNIISDKDVCEKVILDIDDKKHRRMLYGLQGSIVDA-NTCLTYE---DAL 336

Query: 322  KYVDKLIKGTTFPPGESTE---------ECMNTYLFPSLHGTKQKARFLGYMVKCLLQAY 372
             Y+   +  T     + T          E +N  +FP    T QK   LGYM   LLQ  
Sbjct: 337  NYIISNVIYTPLNVDKETGYKRKHDFALEVINNDIFPHCRTTAQKVYMLGYMTNKLLQTS 396

Query: 373  SGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYG---------DR 423
             G  +  +RD + NKR++L G L+    + ++    K M K + R++           + 
Sbjct: 397  FGWMEPTDRDSYLNKRVDLTGSLINNLFRNYLNKLVKDMQKQVVREINSGSWKSNEDYEN 456

Query: 424  TVRPIEYY--LDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRR 481
             +     Y  + +  + NG+ RA +TG +      + ++ G+   L R   + ++  LRR
Sbjct: 457  IINSTNIYKIIKSVTIENGIKRALATGDFGIKQINSNKV-GVAQVLNRLTYISSISHLRR 515

Query: 482  TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLG----VTGLVSTSILEPI 537
                +  +GK+   R  H S WG +C   TP+G + G+VKNL     VT   +T+IL   
Sbjct: 516  VNTPIDKSGKLVPPRRLHNSSWGFLCPAETPEGASVGIVKNLSYMTHVTIPTNTTILYDY 575

Query: 538  FEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVE 597
               +  + +E L D+A  SL  K KVF++G W+G+ ++ L     ++ K+ +  +     
Sbjct: 576  IMPMV-TDIETLGDNAK-SLHDKVKVFINGVWVGITEEPLELFKNIKEKKYKGIINIYTS 633

Query: 598  IKRDELQSEVRIFMDAGRILRPLLVVENMG---------KIKS--LEGKNYTFQALLDHG 646
            +  D    E+++  DAGR+ RP+L VEN           K+++  L   +  +   +   
Sbjct: 634  VIFDCKLLEIKVCNDAGRLTRPVLKVENNAVLYTKELFHKVRAGELNWNDLLYSGKIPQS 693

Query: 647  IIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHA 706
             IE + + E+ +   A     L    + K    ++HCE+  S + G+    IPF  ++ +
Sbjct: 694  AIEYIDSNEQNNTMIAMEPDQLTA-TDSKYVYHYSHCEIHPSTIFGVVASCIPFPENNQS 752

Query: 707  RRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHIL 766
             R  YQS     QA+G   TN   R+D  ++ L YP RPL  T + D           I+
Sbjct: 753  PRNTYQSAM-GKQALGMYVTNYDNRMDKTAYVLSYPMRPLVDTRLMD-----------II 800

Query: 767  PRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAE----VDNKEM 822
                + +G+  IVA+  H GYNQEDS++ N+ S++RG+F +    + K E      N+EM
Sbjct: 801  KLNTIPSGEQVIVAIMSHSGYNQEDSVLFNKGSIDRGLFLATIYHTEKDEDKKLYGNEEM 860

Query: 823  QVK--RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKY---ADSGADH 877
            + K  +  + +M        K    D ++  G       ++  DI+I K     ++  D+
Sbjct: 861  RCKPDKTKTKNM--------KFANYDKINSQGLVPENTLVEDRDIIIAKVLPIKENKNDY 912

Query: 878  SIKLKHT---------ERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKG 928
            +  +K+T         E   + K    SN DG NF  V LR VR P +GDKFSS HGQKG
Sbjct: 913  TKTIKYTDESHVHRTGEETFIDKNYSESNGDGYNFCKVRLRSVRRPVIGDKFSSRHGQKG 972

Query: 929  VLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKR 988
             +G +  +++ PFT  G+ PDI+INPHA PSR T  QL E  LGK +  +G      L  
Sbjct: 973  TIGNIIEEKDMPFTADGLKPDIIINPHAIPSRMTIAQLKETLLGKVLIQMG------LYG 1026

Query: 989  YATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDK 1048
              T F+   +  I  +L + G+   G E +Y+  TGE + S IFIGP FYQRL HM  DK
Sbjct: 1027 DGTSFSKFKIGDIASELQKLGYESNGNEVMYNALTGEQMPSSIFIGPAFYQRLKHMVNDK 1086

Query: 1049 VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHI 1108
               R+ GP+  LTRQP   R R GG++FGEMERDC+I+HGA+     RL+  SD+Y +H+
Sbjct: 1087 QHSRSIGPMVNLTRQPAEGRARDGGLRFGEMERDCMISHGASRFTKGRLYDASDAYSVHV 1146

Query: 1109 CRKCKNVA--NVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
            C KC  +A  N  Q++           C  C++  D     +PY  KL+ QEL++M I
Sbjct: 1147 CNKCGLIASYNKAQQI---------HICNTCENRTDFRYVEIPYSCKLMFQELYTMNI 1195


>gi|322511148|gb|ADX06461.1| putative DNA directed RNA polymerase II [Organic Lake phycodnavirus
            2]
          Length = 1162

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 367/1202 (30%), Positives = 585/1202 (48%), Gaps = 128/1202 (10%)

Query: 37   YGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKP 96
            + LV HQ++SYN+FI+N + K  D F   +V+  +D   + +       + F  +++ +P
Sbjct: 21   HQLVKHQVDSYNDFIQNQMMKTIDMFNPLVVKSPHDYFPEYKTYRLEVEIVFENLSIYRP 80

Query: 97   SFFAGNGGDEHDMFPRHARLQNMTYSSR--MKVKVQFQVYTQKRVTSDKFKTGREQYIQK 154
                 NG  +  MFP  ARL+N TYSS   + +K+++ +   +R+ ++++K     YI  
Sbjct: 81   EIHENNGSTKL-MFPSDARLRNFTYSSNITLDMKIKYIIRNGERLENEEYK-----YIH- 133

Query: 155  EVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVFVAQ 208
                   + I  G+IP+M+ S +C +K           +C  D GGYFII G+EK  + Q
Sbjct: 134  ------LSKIQFGKIPIMLNSCICVLKQYPNIHPDNIDECKMDPGGYFIINGSEKTCLGQ 187

Query: 209  EQICLKRLWV-----SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIK--GGEKVLSVYF 261
            E+    +++       N   WT  Y+S      +  + + M     +   G E ++ +  
Sbjct: 188  EKPADNKIFCFKQKPGNKWLWTAEYRSVPDWKCISPKQIYMMVHSKLSCYGHEILVQLPR 247

Query: 262  LSTEIPIWILFFALGVSSDKEIVNLIDFTCE-DCSILNILFASIHDADNKCDEFRKGRNA 320
            L   IP+++LF ALGV SDK+I +L+    E + SIL+ L ASI++  +    +    ++
Sbjct: 248  LKKPIPLFVLFRALGVESDKQICSLVVLDIEKETSILDYLKASIYEGTS----YNNYEDS 303

Query: 321  LKYVDKLIKGTTFPP------------GESTEECMNTYLFPSLHGTKQKARFLGYMVKCL 368
            L+Y+   I    + P             E   + ++  LFP     ++K   LG+M   L
Sbjct: 304  LEYI---ISNVIYTPINMDKDEGHKKKTEFALDVLSNDLFPHCKTKEEKVYLLGFMTNKL 360

Query: 369  LQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDR----- 423
            ++ + G  +  NRD + NKR+EL G LL    + +     K + K + R++         
Sbjct: 361  IKCFCGMEQQTNRDSYENKRVELTGTLLNNLFRNYFNKVVKDIQKQVIREINNGSWKSSE 420

Query: 424  ------TVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLV 477
                  T+  I   + ++ + NG+ RA STG +      T ++ G+   L R   L TL 
Sbjct: 421  DYSNIITLTNIYKIVKSTTIENGIKRALSTGDFGIKSMNTNKV-GVAQVLNRLTYLSTLS 479

Query: 478  DLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEP 536
             LRR    +  +GK+ + R  H S WG +C   TP+G++ G+VKNL     VST S   P
Sbjct: 480  HLRRVNTPIDKSGKLVEPRKLHGSTWGFLCPAETPEGQSVGVVKNLSYMTNVSTYSDSTP 539

Query: 537  IFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQV 596
            I+E +    +  L    +     K K+FV+G WIGV          L+ K+ +  +    
Sbjct: 540  IYEYI-QPYLFALDHYNTTEFYDKVKIFVNGRWIGVTNQPNELFLSLKEKKYKGMIHIYC 598

Query: 597  EIKRDELQSEVRIFMDAGRILRPL--------LVVENMG---KIKSLEGKNYTFQALLDH 645
             I  +    E+ +  + GR++RPL        L+ ++M    K   L  ++       + 
Sbjct: 599  SIVFNYKLKEIYVCNECGRLVRPLFKVKQNKILLTKDMTEQIKEDKLVWRDLILPLKTED 658

Query: 646  GIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDH 705
             IIE +  EE+           L +D        +THCE+  S + G+    IPF  H+ 
Sbjct: 659  SIIEYIDAEEQNTSMICMKPN-LFQD-----NYSYTHCEIHPSTIFGVLASCIPFPQHNQ 712

Query: 706  ARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHI 765
            + R  YQ      QAIG   +N + R+D  ++ L Y  RPL  T + +           +
Sbjct: 713  SPRNTYQCAM-GKQAIGIYVSNFNKRMDKTAYVLNYTMRPLVETRVMN-----------M 760

Query: 766  LPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVD-----NK 820
            +   EL  G   IVA+  H GYNQEDS+++N+ SL+RG+F   H   Y  E D     N 
Sbjct: 761  MKLNELPCGNQVIVAIMTHSGYNQEDSVLINKGSLDRGLF---HATIYHTEKDEDKKING 817

Query: 821  EMQVKRRSSDDM---VNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA-- 875
            E +++ + + ++   + FG    KI ++  ++++        + S  +VI  + +     
Sbjct: 818  EEELRIKPNPNLTRNMKFGNY-DKINKMGVMNENEIIEDKDIIISKVVVIKDHKNDNTKL 876

Query: 876  ----DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLG 931
                D S   + TE   V K  +  N DG  F  V +R +R P +GDKFSS HGQKG +G
Sbjct: 877  VKYEDQSKSYRTTEECYVDKTYIDRNGDGYTFCKVRIRAMRKPNIGDKFSSRHGQKGTVG 936

Query: 932  FLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAA---LGKGICSGLKR 988
             +  +++ PFT +G+ PDI+INPHA PSR T  QL E  +GK +      G G       
Sbjct: 937  NIIEEQDMPFTKEGVRPDIIINPHAIPSRMTIAQLKETLVGKLLLKLGLFGDG------- 989

Query: 989  YATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDK 1048
              T F    ++ + ++L +  +   G E LYDG+TGE +++ IFIGP +YQRL HM  DK
Sbjct: 990  --TSFGEMDMNEVYKELQKHNYESKGNEVLYDGKTGEQIKTSIFIGPVYYQRLKHMVNDK 1047

Query: 1049 VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHI 1108
               R  GP+  LTRQP   R R GG++FGEMERDC+I+HGA+    ER++ +SD Y +++
Sbjct: 1048 QHSRCIGPMVNLTRQPAEGRSRDGGLRFGEMERDCMISHGASKFTKERIYDVSDKYAVNV 1107

Query: 1109 CRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
            C+KC  +A     V      +    C +C++  D     +PY  KLL QEL +M I  + 
Sbjct: 1108 CKKCGMIA-----VYNDKEHIH--ICNVCENRTDFSYVKIPYSCKLLFQELITMNIVPRI 1160

Query: 1169 DT 1170
             T
Sbjct: 1161 MT 1162


>gi|14591329|ref|NP_143407.1| DNA-directed RNA polymerase subunit B [Pyrococcus horikoshii OT3]
 gi|3257974|dbj|BAA30657.1| 1117aa long hypothetical DNA-directed RNA polymerase subunit B
            [Pyrococcus horikoshii OT3]
          Length = 1117

 Score =  521 bits (1341), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 387/1197 (32%), Positives = 600/1197 (50%), Gaps = 163/1197 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            S++ E GLV   ++SYN FI+ GLQ+  D FG      G  P            ++FG++
Sbjct: 20   SYWEEKGLVRQHLDSYNAFIERGLQEVVDEFG------GIKPDIPD------FEVKFGKI 67

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             + +P F   + G    ++P  AR++N+TYS+ + +++   +             G EQ 
Sbjct: 68   RVGEPEFQEPH-GQRKPLYPMDARIRNLTYSAPLYLEMIPVI------------RGIEQ- 113

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
                    +   + IG +P+M+KS  C + G      ++ G+   D GGYFII G+E+V 
Sbjct: 114  --------DPVEVRIGELPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFIINGSERVI 165

Query: 206  VAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVD-------MSKFEDIKGGEKVLS 258
            V+ E I   R  V          + + ++ + I ++         +   E  K G  +L 
Sbjct: 166  VSIEDIAPNRTLV----------EKDERQEKYIAKVFSYRHGYRALVTVERKKDG--ILY 213

Query: 259  VYFLSTEIPIWILFF--ALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRK 316
            V   +   P+  ++   ALG+  DK+IV   D    D  +  ILF ++ DA +   +   
Sbjct: 214  VGIPNVPRPVKFVYVMRALGLERDKDIV---DAVGNDPEVQQILFDNLEDASDITTQ--- 267

Query: 317  GRNALKYVDKLIKGTTFPPGES-------TEECMNTYLFPSLHGTKQ----KARFLGYMV 365
             + AL+Y+ KL+      PG++        E  ++  L P +  T +    KA +LG M 
Sbjct: 268  -QEALEYIGKLVA-----PGQAREYRLKRAEYVIDNNLLPHMGVTPEDRIRKAYYLGMMA 321

Query: 366  KCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARK----RMAKALQRDLYG 421
              +++   G+R  D++D + NKRL LAG+LL+   +V  +   K    +M K  QR   G
Sbjct: 322  LKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLIKDIQYQMTKTYQRR--G 379

Query: 422  DRTV-----RPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTL 476
            ++ V     R I   +   +LT  +  A +TGAW  P  RT    G+   L R N + TL
Sbjct: 380  EKYVFSNIHRFIRNSIRPDVLTERIEHALATGAW--PGGRT----GVSQLLDRTNYVSTL 433

Query: 477  VDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSIL-E 535
              LRR    +       +AR  H +HWG+IC   TP+G NCGLVKNL +   ++T++  E
Sbjct: 434  SHLRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEE 493

Query: 536  PIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQ 595
             + E L + G+  +  +        ++V+++G  IG  +D  + V  +++ RR  ++   
Sbjct: 494  EVREYLMSLGIVPI--EVRRPSPELWRVYLNGVLIGTVEDGKALVERIKKDRRSGKISDI 551

Query: 596  VEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIE 649
            + +   E   EV +  D GR+ RPL++VEN         +++++     +  L+  G+IE
Sbjct: 552  INVAYYEDVKEVYVNSDDGRVRRPLIIVENGVPKLTKEHVQAIKEGRLKWSDLVRMGVIE 611

Query: 650  LVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRV 709
             +  EEEE+   A     + K+         TH EL  + +LGL   +IP+  H+ A R 
Sbjct: 612  YLDAEEEENAYVAMWPWEVTKE--------HTHLELMPAAILGLPASLIPYPEHNAAPRN 663

Query: 710  LYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRP 769
             Y +   + Q++G    N  IRVDT  H L YPQ PL  + I   +G           RP
Sbjct: 664  TYGA-GMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYED--------RP 714

Query: 770  ELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEM--QVKRR 827
                GQN +VAV  + GYN ED++++N+AS+ERG+ RS   R+Y+AE + K +  Q  R 
Sbjct: 715  ---AGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAE-EKKYLGGQTDRF 770

Query: 828  SSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADS--------GA---- 875
                    G    K  R   LD+DG  F  + ++  D++IG+ +          GA    
Sbjct: 771  EIPAPTVRGYRGEKYYR--HLDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQ 828

Query: 876  ---DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGF 932
               + S+ ++ +E+G+V KV+++   DG     V++R +R P +GDKF+S HGQKGV+G 
Sbjct: 829  ERRETSVAVRPSEKGIVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGL 888

Query: 933  LESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATP 992
            +  QE+ P+T  GIVPD+++NPH  PSR T GQLLEA  GK +AAL      G +   T 
Sbjct: 889  IVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGK-VAAL-----KGRRVDGTA 942

Query: 993  FATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFR 1052
            F     + + ++L   GF   G E +YDG TG+   + IFIG  +YQRL HM  DK+  R
Sbjct: 943  FIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFIGIIYYQRLHHMVADKIHAR 1002

Query: 1053 NTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKC 1112
            + GPV  LT+QP   R R GG++FGEMERD L+ HGAA  L ERL   SD  ++ +C  C
Sbjct: 1003 SRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENC 1062

Query: 1113 KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFD 1169
             ++A   +R      KV   YC +C   + I K  + Y  KLL  EL +M I  K +
Sbjct: 1063 GHIAIEDKR----RHKV---YCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKLN 1112


>gi|229579766|ref|YP_002838165.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus
            Y.G.57.14]
 gi|229581565|ref|YP_002839964.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus
            Y.N.15.51]
 gi|228010481|gb|ACP46243.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus Y.G.57.14]
 gi|228012281|gb|ACP48042.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus Y.N.15.51]
          Length = 1131

 Score =  521 bits (1341), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 380/1208 (31%), Positives = 589/1208 (48%), Gaps = 167/1208 (13%)

Query: 28   KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVE-PGYDPSKKGEGEWRYASM 86
            K   ++F   GLV   ++SYN+F++N LQ+  D  GE   E PG               +
Sbjct: 15   KVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEIPTEIPGL-------------KV 61

Query: 87   RFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKT 146
            R G++ + KP     + G E ++ P  ARL+N+TY++ + +       T   V ++    
Sbjct: 62   RLGKIRIGKPRVRESDRG-EREISPMEARLRNLTYAAPLWL-------TMIPVENN---- 109

Query: 147  GREQYIQKEVLSDETTNIIIGRIPVMVKSDL------CWMKGVEKGDCDFDHGGYFIIKG 200
                      +  E   + IG +P+M+KS +         K +E G+   D GGYFI+ G
Sbjct: 110  ----------IEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNG 159

Query: 201  AEKVFVAQEQICLKRLWVS-----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEK 255
            +E+V V QE +   R+ V      +++  T    S     R+ V +      E +K G  
Sbjct: 160  SERVIVTQEDLAPNRVLVDTGKTGSNITHTAKIISSTAGYRVPVTI------ERLKDGTF 213

Query: 256  VLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFR 315
             +S   +  +IP  IL  ALG+ +D++IV  +     D  I N LF S+  A +  +   
Sbjct: 214  HVSFPAVPGKIPFVILMRALGILTDRDIVYAVSL---DPEIQNELFPSLEQASSIANV-- 268

Query: 316  KGRNALKYVDKLIKGTTFPPG-------ESTEECMNTYLFPSLHGT----KQKARFLGYM 364
               +AL ++     G+    G       E  ++ ++ Y  P L  +    ++KA +L Y 
Sbjct: 269  --DDALDFI-----GSRVAIGQKRENRIEKAQQIIDKYFLPHLGTSADDRRKKAYYLAYA 321

Query: 365  VKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRT 424
            +  +++ Y GRR+ D++D + NKRL LAG+L     +V      K +   L++     R 
Sbjct: 322  ISKVIELYLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKSKVRGRK 381

Query: 425  VRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQ 484
            +  ++  +   I+T  +  A +TG W     RT    G+   L R N L  L  LRR   
Sbjct: 382  L-ALKALVRPDIVTERIRHALATGNWVG--GRT----GVSQLLDRTNWLSMLSHLRRVIS 434

Query: 485  QVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQ-LFN 543
             +       +AR  H + WG++C   TP+G N GLVKNL +   ++  I E I E+ L+ 
Sbjct: 435  SLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALMAQIAVGINERIVEKTLYE 494

Query: 544  SGMEKLADDA-SYSLGGK--------FKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPT 594
             G+  + +     + GG+         KV ++G  +G  +D      ++R +RR  E+  
Sbjct: 495  MGVVPVEEVIRRVTEGGEDQNEYLKWSKVILNGRLVGYYRDGEELAKKIRERRRNGEISD 554

Query: 595  QVEIKR--DELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHG 646
            +V +     +  +EV +  D+GR+ RPL++V N         I+ L+  + TF  L+  G
Sbjct: 555  EVNVGHIVTDFINEVHVNCDSGRVRRPLIIVSNGNPLVTREDIEKLDSGSITFDDLVRQG 614

Query: 647  IIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHA 706
             IE +  EEEE+        Y+  +  D  P + TH E+    +LG++  IIP+  H+ +
Sbjct: 615  KIEYLDAEEEENA-------YVALEPSDLTP-EHTHLEIWSPAILGITASIIPYPEHNQS 666

Query: 707  RRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHIL 766
             R  YQS   + QA+G    N  +R DT +H L YPQRPL +T   D +G          
Sbjct: 667  PRNTYQS-AMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQTRALDIIGYTN------- 718

Query: 767  PRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKR 826
             RP    G NAI+AV    GYN EDS++MNR+S+ERGM+RS   R Y  E    E++   
Sbjct: 719  -RPA---GNNAILAVISFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTE----EVKYPG 770

Query: 827  RSSDDMVN--------FGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA------- 871
               D +V          GK   ++     L+D+G       ++ GD++IGK +       
Sbjct: 771  GQEDKIVMPEPGVRGYKGKEYYRL-----LEDNGVVSPEVEVKGGDVLIGKVSPPRFLQE 825

Query: 872  -------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMH 924
                    +  D SI  +H E G+V  V+++   +G     V +R +R P +GDKF+S H
Sbjct: 826  FKELSPEQAKRDTSIVTRHGEMGIVDLVLITETAEGNKLVKVRVRDLRVPSIGDKFASRH 885

Query: 925  GQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICS 984
            GQKGV+G L  Q + P+T++G+VPD+++NPHA PSR T GQ++E   GK  AAL   I  
Sbjct: 886  GQKGVIGMLIPQVDMPYTVKGVVPDVILNPHALPSRMTLGQIMEGIAGK-YAALSGNIVD 944

Query: 985  GLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHM 1044
                 ATPF    ++ +  ++ + G+    TE  YDGR+G+ ++S I+ G  +YQ+L HM
Sbjct: 945  -----ATPFYKTPIEQLQNEILKYGYLPDATEVTYDGRSGQKIKSRIYFGVVYYQKLHHM 999

Query: 1045 SEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSY 1104
              DK+  R  GPV  LTRQP   R R GG++FGEMERDCLI  G A  L +RL   SD  
Sbjct: 1000 VADKIHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLIGFGTAMLLKDRLLDNSDRT 1059

Query: 1105 QMHICRKCKNVANVIQRVVGGGRKVRGPY-CRICDSGDDIVKANVPYGAKLLCQELFSMG 1163
             +++C +C          +G   K +  Y C I     ++    V Y  KLL QEL SM 
Sbjct: 1060 TIYVCDQCG--------YIGWYDKNKNKYICPIHGDKSNLFPVTVSYAFKLLIQELMSMI 1111

Query: 1164 ITLKFDTE 1171
            I+ +   E
Sbjct: 1112 ISPRLILE 1119


>gi|18977936|ref|NP_579293.1| DNA-directed RNA polymerase subunit B [Pyrococcus furiosus DSM 3638]
 gi|397652057|ref|YP_006492638.1| DNA-directed RNA polymerase subunit B [Pyrococcus furiosus COM1]
 gi|18893706|gb|AAL81688.1| DNA-directed RNA polymerase subunit b [Pyrococcus furiosus DSM 3638]
 gi|393189648|gb|AFN04346.1| DNA-directed RNA polymerase subunit B [Pyrococcus furiosus COM1]
          Length = 1117

 Score =  521 bits (1341), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 379/1197 (31%), Positives = 597/1197 (49%), Gaps = 163/1197 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            S++ E GLV   ++SYN FI+ GLQ+  + FG      G  P            ++FG++
Sbjct: 20   SYWQEKGLVRQHLDSYNAFIERGLQEVVNEFG------GIKPDIPD------FEVKFGKI 67

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             + +P F   +G     ++P  AR++N+TY++ + +++   +             G EQ 
Sbjct: 68   RVGEPEFQEPHG-QRKPLYPMDARIRNLTYAAPLYLEMIPVI------------KGVEQ- 113

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
                    +   + IG +P+M+KS +C + G      ++ G+   D GGYFII G+E+V 
Sbjct: 114  --------DPVEVRIGELPIMLKSKVCRLYGLSDEELIKLGEDPKDPGGYFIINGSERVI 165

Query: 206  VAQEQICLKRLWVSNS------MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            V+ E I   R  V         +    +Y+   +    + R  D   + DI    K +  
Sbjct: 166  VSIEDIAPNRTLVEKDERQEKYIAKVFSYRHGYRALVAVERRKDGILYVDIPNVPKPVKF 225

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
             ++           ALG+  DK+IV  +     D  +  I+F ++ DA +   +    + 
Sbjct: 226  VYV---------MRALGLERDKDIVEAV---GNDPEVQQIMFDNLEDASDITTQ----QE 269

Query: 320  ALKYVDKLIKGTTFPPGES-------TEECMNTYLFPSLHGTKQ----KARFLGYMVKCL 368
            AL+++ KL+      PG++        E  ++  L P +  + +    KA +LG M   +
Sbjct: 270  ALEFIGKLVA-----PGQAREYRLKRAEYVIDNNLLPHMGVSPEDRIKKAYYLGMMALKV 324

Query: 369  LQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARK----RMAKALQRDLYGDRT 424
            ++   GRR  D++D + NKRL LAG+LL+   +V  +   K    +M K  QR   GD+ 
Sbjct: 325  IELSLGRRPEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRK--GDKY 382

Query: 425  V-----RPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDL 479
                  R I   +   +LT  +  A +TGAW  P  RT    G+   L R N + TL  L
Sbjct: 383  TFGNIHRFIRNSIRPDVLTERIEHALATGAW--PGGRT----GVSQLLDRTNYMSTLSHL 436

Query: 480  RRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEP-IF 538
            RR    +       +AR  H +HWG+IC   TP+G NCGLVKNL +   ++T++ E  I 
Sbjct: 437  RRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEEEIR 496

Query: 539  EQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEI 598
            E L + G+  +  +        ++V+++G  IG  +D  + V  +R+ RR  ++   + +
Sbjct: 497  EYLMSLGIVPI--EVRRPDPTLWRVYLNGVLIGTIEDGKALVQRIRQDRRSGKISDVINV 554

Query: 599  KRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIELVG 652
               E   EV +  D GR+ RPL++VEN         +++++     +  L+  GIIE + 
Sbjct: 555  AYYEDVKEVYVNSDDGRVRRPLIIVENGVPKLTKEHVQAVKEGRLKWSDLIKMGIIEYLD 614

Query: 653  TEEEEDCCTA---WGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRV 709
             EEEE+   A   W +             + TH EL  + +LGL   ++P+  H+ A R 
Sbjct: 615  AEEEENAYVAMWPWEVTE-----------EHTHLELMPAAILGLPASLVPYPEHNAAPRN 663

Query: 710  LYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRP 769
             Y +   + Q++G    N  IRVDT  H L YPQ PL  + I   +G           RP
Sbjct: 664  TYGA-GMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYED--------RP 714

Query: 770  ELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEM--QVKRR 827
                GQN +VAV  + GYN ED++++N+AS+ERG+ RS   R+Y+AE + K +  Q  + 
Sbjct: 715  ---AGQNFVVAVLAYQGYNMEDAIIINKASIERGLARSTFFRTYEAE-EKKYLGGQTDKF 770

Query: 828  SSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---------------D 872
               D    G    K  R  +LD+DG  F  + ++  D+++G+ +                
Sbjct: 771  EIPDPTVRGYRGEKYYR--NLDEDGLIFPESKVEGKDVLVGRTSPPRFLEERGLGTVSLQ 828

Query: 873  SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGF 932
               + S+ ++ +E+G+V KV+++   DG     V++R +R P LGDKF+S HGQKGV+G 
Sbjct: 829  ERRETSVAVRPSEKGVVDKVIITETGDGTKLVKVTVRDLRIPELGDKFASRHGQKGVIGL 888

Query: 933  LESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATP 992
            +  QE+ P+T  GIVPD+++NPH  PSR T GQL+EA  GK +A+L      G +   T 
Sbjct: 889  IVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGK-VASL-----KGRRVDGTA 942

Query: 993  FATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFR 1052
            F     + + ++L   GF   G E +YDG TG+ + + IFIG  +YQRL HM  DK+  R
Sbjct: 943  FIGEPEEKLRKELEELGFKHTGREIMYDGITGKRLEADIFIGVIYYQRLHHMVADKIHAR 1002

Query: 1053 NTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKC 1112
            + GPV  LT+QP   R R GG++FGEMERD L+ HGAA  L ERL   SD  ++ +C  C
Sbjct: 1003 SRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCENC 1062

Query: 1113 KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFD 1169
             ++A   +R     R+V   YC +C   + I K  + Y  KLL  EL +M I  K +
Sbjct: 1063 GHIALEDKR----RRRV---YCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKLN 1112


>gi|67515352|gb|AAY68205.1| RNA polymerase IV second largest subunit [Sphagnum sp. JL-2005]
          Length = 650

 Score =  521 bits (1341), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 300/678 (44%), Positives = 405/678 (59%), Gaps = 51/678 (7%)

Query: 519  LVKNLGVTGLVSTSI-LEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSL 577
            LVK+L +TG+VS+ +  + +   L    ME L +    +L  K KVFV+G W+GV  D  
Sbjct: 1    LVKHLSLTGIVSSDMPTDMVMCVLSEHSMENLEETNPANLQYKDKVFVNGTWVGVMIDPE 60

Query: 578  SFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGK 628
              V+ELR  RR   L ++VE+ RD ++ EV I+ D GRILRPLL+V+N         + K
Sbjct: 61   KAVNELREIRRSHHLHSEVEVVRDPVRREVFIYTDGGRILRPLLLVQNQRLVLSRQHLKK 120

Query: 629  IK---SLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCEL 685
            +K    L G    +  LL  G++EL+G EEEE    A   + L K  E      +TH E+
Sbjct: 121  LKVMMRLHGAGACWTYLLKEGVVELLGIEEEEKVMVATNGQDLEKAREYAHAPVYTHSEI 180

Query: 686  DMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRP 745
            D SFLLGL   +IPF  H+ A R L+QS+KH  QAIG+  TN   R D+ +H LFYPQ+P
Sbjct: 181  DSSFLLGLGAVMIPFLQHNQALRNLHQSEKHCRQAIGYYCTNLWSRADSSAHHLFYPQKP 240

Query: 746  LFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMF 805
            L  T  +DCL KP           EL NGQ AIVA+     YNQEDS+VMN+AS++RG+F
Sbjct: 241  LVTTRAADCLQKP-----------ELMNGQVAIVAIQ-SFAYNQEDSIVMNQASIDRGLF 288

Query: 806  RSEHIRSYKAEV-DNKEMQVKRRSSDDMVNFGKIQSKI---GRVDSLDDDGFPFIGANLQ 861
            RS H + ++ E   N +    + S  D   +    S +     +D +DDDGFP +G NL 
Sbjct: 289  RSAHYKIHRGEERKNVDEHFSKPSISDHKGWTHAWSGLDYKACLDKVDDDGFPCVGENLT 348

Query: 862  SGDIVIGKY-ADSG----ADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCL 916
             G+IVIGK  A+ G    ++ S  LK  ++G V +V+L++ +DG   S V LR  R+P  
Sbjct: 349  KGNIVIGKLTAEQGRPKLSNTSTHLKLHQKGHVDQVLLANEEDGHRISKVRLRFTRAPQA 408

Query: 917  GDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIA 976
            GDKFSS+HGQKGV+G +  QE+ P+T QGIVPDI+INPHA PSRQT GQ++E  LG+ +A
Sbjct: 409  GDKFSSLHGQKGVIGAVFPQEDLPYTRQGIVPDIIINPHALPSRQTFGQIMECLLGEVVA 468

Query: 977  ALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPT 1036
              GK        +AT   TP    + E L +  + + G E + +G TG  + +LI +GPT
Sbjct: 469  TSGKPC------FATRAETPQ--RVNELLFQYHYGRGGAEYMCNGTTGMPLEALITMGPT 520

Query: 1037 FYQRLIHMSEDKVKFRNT-GPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHE 1095
            FYQRL HM EDK+KFR   G ++PLT QPV DR   GG+KFGEMERDC++ HGA++ L  
Sbjct: 521  FYQRLDHMVEDKIKFRGIGGSINPLTHQPVRDRNSLGGVKFGEMERDCMLGHGASSTLRX 580

Query: 1096 RLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLL 1155
            R F LSD Y+M+IC  C+  A +  +          P C  C +G  IV+  +PY  KLL
Sbjct: 581  RYFLLSDPYKMNICAACRRPATMDTKXT--------PKCXXCKNGKRIVQIQIPYACKLL 632

Query: 1156 CQELFSMGITLKFDTEFC 1173
             QEL SMGI++  DT+ C
Sbjct: 633  WQELLSMGISVYMDTKLC 650


>gi|119872217|ref|YP_930224.1| DNA-directed RNA polymerase subunit B [Pyrobaculum islandicum DSM
            4184]
 gi|119673625|gb|ABL87881.1| DNA-directed RNA polymerase, subunit B' [Pyrobaculum islandicum DSM
            4184]
          Length = 1127

 Score =  521 bits (1341), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 379/1192 (31%), Positives = 584/1192 (48%), Gaps = 156/1192 (13%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
            F  + GL +HQI S+N+F+   L K  + F            K  E E +   +   ++ 
Sbjct: 31   FIRDKGLANHQIKSFNDFLDKKLPKIVEDF------------KVIETEIKGLKLVLERIE 78

Query: 93   LDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYI 152
            +  P     +G  E  ++P  ARL+N TYS+ + +     V  +  VT   +        
Sbjct: 79   VGWPRIKESDGS-ESLIYPMEARLRNATYSAPLYLTATLYVDDEPYVTETFY-------- 129

Query: 153  QKEVLSDETTNIIIGRIPVMVKSDLCWM------KGVEKGDCDFDHGGYFIIKGAEKVFV 206
                         IG +P+MVKS  C +      + V+K +   D GGYFII G+E+V +
Sbjct: 130  -------------IGELPIMVKSKRCNLTRLKPSEYVKKFEDPQDFGGYFIINGSERVII 176

Query: 207  AQEQICLKRLWVSNSMGWTVAYKSEN------KRNRLIVRLVDMSKFEDIKGGEKVLSVY 260
            +QE +   R         +V Y ++        R+ L+V L         K G   +++ 
Sbjct: 177  SQEDLVTDRPIYDKGDKPSVKYIAKTISTGIGYRSTLVVELN--------KDGIIYVTLS 228

Query: 261  FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNA 320
             +  +IP  +   ALG+ +D+++V  +    +D  I   L  S+  A+          +A
Sbjct: 229  AMPVKIPFPVYMKALGLETDEDVVKAV---SDDPEIQKELLPSLIAANQIAI---TKEDA 282

Query: 321  LKYVD-KLIKGTTFPPG-ESTEECMNTYLFPSLHGT-----KQ------KARFLGYMVKC 367
            L ++  K+  G   P   E   + ++ Y  P L  T     KQ      KA  LG +VK 
Sbjct: 283  LDFIGGKVAVGQPKPIRVEKALQLLDRYFLPHLGTTVPDEKKQQEIRLKKALMLGQIVKG 342

Query: 368  LLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRP 427
            L++   GRRK D++D   NKR+ L G+L+ +  +       + +   L++  Y    +  
Sbjct: 343  LIELDLGRRKPDDKDHVANKRVRLVGDLMTQLFRTVFKQFLQELKSQLEK-YYARGRIPH 401

Query: 428  IEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQ 487
            I+  +   I+T  + +A +TG W          +G+   L R N + TL  LRR    + 
Sbjct: 402  IQTIVRPDIITERVRQALATGNW------VGGKTGVSQILDRTNYMSTLSYLRRVVSSLS 455

Query: 488  YTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQL-FNSGM 546
             T    +AR  HP+ WG++C + TP+G+N GLVKNL +   ++T + E   EQL +N G+
Sbjct: 456  RTQPHFEARDLHPTQWGRLCAVETPEGQNVGLVKNLALLAEITTGVDEGEVEQLLYNLGV 515

Query: 547  EKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSE 606
              +       + G  +V+++G  IG+  +       +R  RR+ ++  ++ I    L + 
Sbjct: 516  VPILKARDEGIRGA-EVYINGRLIGIHPNPDELARTVRSLRRQGKISDEINIAV--LNNA 572

Query: 607  VRIFMDAGRILRPLLVVENMGKIK-------SLEGKNYTFQALLDHGIIELVGTEEEEDC 659
            V +  D GRI RPLLVVEN GK+K        +     T+  L+  G+IE +  +EEE+ 
Sbjct: 573  VYVNCDGGRIRRPLLVVEN-GKLKLTKEIVEKVRRGELTWDDLVKMGVIEYLDADEEENA 631

Query: 660  CTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQ 719
                   Y+  D  D    K+TH E+  S +LG    IIP+  H+ + R  Y++   + Q
Sbjct: 632  -------YIATDPHDDLS-KYTHVEIIPSAILGAVASIIPYLEHNQSPRNQYEAA-MAKQ 682

Query: 720  AIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLG---KPGYGHNHILPRPELYNGQN 776
            ++G P +N   ++D+  H L+YP+RP+  T   + +G   KP               GQN
Sbjct: 683  SLGLPQSNFLYKLDSRGHMLYYPERPIVTTRGLELIGYSKKPA--------------GQN 728

Query: 777  AIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFG 836
            A+VA+  + GYN ED++++N+A++ERGMFRS   R+Y+ E      Q      +D +   
Sbjct: 729  AVVALLTYTGYNMEDAIILNKAAVERGMFRSVFYRTYETE-----EQKYPGGEEDKIEVP 783

Query: 837  KIQSKIGR----VDSLDDDGFPFIGANLQSGDIVIGKYA--------------DSGADHS 878
                K  R       LD+DG       + S +++IGK +                  D S
Sbjct: 784  DSSVKGYRGPEAYSHLDEDGIAPPEVYVSSNEVIIGKTSPPRFYTTLETERILKERRDSS 843

Query: 879  IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQEN 938
            + ++  E+G+V +V+++ + +G     V LR++R P LGDKF+S HGQKGV+G +   E+
Sbjct: 844  VAVRRGEKGIVDRVIITESPEGNRLVKVRLRELRIPELGDKFASRHGQKGVVGMILRHED 903

Query: 939  FPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSV 998
             PFT +GIVPDI++NPHA PSR T GQLLE+  GK  A+LG  +       ATPF     
Sbjct: 904  MPFTEEGIVPDIIVNPHALPSRMTVGQLLESIAGKIGASLGALVD------ATPFEGVKE 957

Query: 999  DAITEQLHRAGFSKW-GTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPV 1057
            + + + L + G+ KW G E +Y G TGE + + IFIG  +YQ+L HM  DK+  R  GPV
Sbjct: 958  EELRKLLMKLGY-KWDGKEVMYSGITGEKLVADIFIGVVYYQKLHHMVADKIHARARGPV 1016

Query: 1058 HPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVAN 1117
              LTRQP   R R GG++ GEMERD LIAHGA+A L+ERL   SD Y M++C  C   A 
Sbjct: 1017 QILTRQPTEGRSREGGLRLGEMERDVLIAHGASALLYERLVESSDKYTMYVCELCGLPAY 1076

Query: 1118 VIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFD 1169
            +  R          P C I        K  VPY  KLL QEL ++GI  K +
Sbjct: 1077 LDAR-------TNKPRCPIHGDTGQFAKVIVPYAFKLLLQELIALGIYPKLE 1121


>gi|240103983|ref|YP_002960292.1| DNA-directed RNA polymerase subunit B [Thermococcus gammatolerans
            EJ3]
 gi|239911537|gb|ACS34428.1| DNA-directed RNA polymerase subunit B (rpoB) [Thermococcus
            gammatolerans EJ3]
          Length = 1122

 Score =  520 bits (1339), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 385/1196 (32%), Positives = 599/1196 (50%), Gaps = 168/1196 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            S++ E GLV   ++SYN FI++GLQ+  + FG      G  P            ++FG++
Sbjct: 22   SYWKEKGLVRQHLDSYNAFIEHGLQEVINEFG------GVKPDIPN------FEVKFGKI 69

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             L +P F    G     ++P  AR++N+TYS+ + +++   V             G EQ 
Sbjct: 70   RLGEPIFQEAQG-QRRPLYPMDARIRNLTYSAPLFLELIPVV------------NGIEQ- 115

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
                    E   + IG +P+M+KS  C + G      +E G+   D GGYFII G+E+V 
Sbjct: 116  --------EPVEVRIGELPLMLKSKACRLYGLSDEELIELGEDPKDPGGYFIINGSERVI 167

Query: 206  VAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVD-------MSKFEDIKGGEKVLS 258
            V+ E +   +  V          + + ++ +++ ++         +   E  K G   +S
Sbjct: 168  VSIEDLAPNKTLV----------EKDERQKKVVAKVFSYRHGYRALITVESRKDGILYVS 217

Query: 259  VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGR 318
            +  +   +    +  ALG+ SDKEIV  I    ED  I  +LF ++ DA +     R   
Sbjct: 218  IPNVPKPVKFVYVMRALGLLSDKEIVEAI---SEDPRIQQVLFNNLEDASD----IRTQE 270

Query: 319  NALKYVDKLIKGTTFP--PGE----STEECMNTYLFPSL----HGTKQKARFLGYMVKCL 368
             AL ++ +L    + P  P E      E  ++  L P +       K KA +LG M   +
Sbjct: 271  EALDFIGRL----SLPGQPKEYRLRRAEHIIDNNLLPHMGVEPENRKAKAYYLGMMALKV 326

Query: 369  LQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARK----RMAKALQRDLYGDR- 423
            L+   G R  D++D + NKRL+LAG+LL+   +V      K    +M K  QR   G+R 
Sbjct: 327  LELSLGLRGEDDKDHYANKRLKLAGDLLKDLFRVAFGQLVKDMQYQMTKTYQRK--GERY 384

Query: 424  TVRPIEYYLDASI----LTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDL 479
            T   I+ ++  S+    L+  +  A +TG+W  P  RT    G+   L R N + TL  L
Sbjct: 385  TFENIQRFVRNSVRPDVLSERIEHALATGSW--PGGRT----GVSQLLDRTNYISTLSHL 438

Query: 480  RRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEP-IF 538
            RR    +       +AR  H +HWG+IC   TP+G NCGLVKNL +   ++T I E  + 
Sbjct: 439  RRVTSPLSREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMSQITTGIPEEEVK 498

Query: 539  EQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEI 598
            E +   G+  + +       G ++V+++G  IG  +D  + V  +R  RR  ++   + +
Sbjct: 499  EYILKLGVVPIEERRPSP--GLYRVYLNGVLIGTIEDGKALVQTIRSDRRAGKISDVINV 556

Query: 599  KRDELQS--EVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIEL 650
               E     E+ I  D GR+ RPL++VEN         +++++    T+  L+  G+IE 
Sbjct: 557  ALYEEGDVREIYINSDDGRVRRPLIIVENGRPKLTREHVEAIKNGTLTWSDLIRMGVIEY 616

Query: 651  VGTEEEEDCCTA---WGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHAR 707
            +  EEEE+   A   W +             + TH EL  + +LG+   ++P+  H+ A 
Sbjct: 617  LDAEEEENAYVATWPWEVTE-----------EHTHLELMPAAILGIPASLVPYPEHNAAP 665

Query: 708  RVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILP 767
            R  Y +   + Q++G    N  IRVDT  H + YPQ PL  + I   +G           
Sbjct: 666  RNTYGA-GMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVG--------FEE 716

Query: 768  RPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEM--QVK 825
            RP    GQN +VAV  + GYN ED++V+N+AS+ERG+ RS   R+Y+AE + + +  Q+ 
Sbjct: 717  RP---AGQNFVVAVLSYGGYNMEDAIVINKASIERGLARSTFFRTYEAE-EKRYLGGQMD 772

Query: 826  RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA-------DSGA--- 875
            R    D    G +  +  R  +LD+DG  F  + ++  D+++G+ +        SG    
Sbjct: 773  RFEKPDPTIKGYLGDRYYR--NLDEDGIIFPESKVEGKDVLVGRTSPPRFLEEQSGLGGI 830

Query: 876  ------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGV 929
                  + S+ ++ +E+G+V KV+++   DG     V++R +R P LGDKF+S HGQKGV
Sbjct: 831  ALQERRETSVAVRPSEKGIVDKVIITETGDGTKLVKVTVRDLRIPELGDKFASRHGQKGV 890

Query: 930  LGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRY 989
            +G +  QE+ P+T  GIVPD+++NPH  PSR T GQL+EA  GK +A+L      G +  
Sbjct: 891  IGLIVPQEDMPWTENGIVPDLIVNPHGIPSRMTVGQLIEAIGGK-VASL-----KGRRVD 944

Query: 990  ATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKV 1049
             T F     + + ++L   GF   G E +YDG TG  + + IFIG  +YQRL HM  DK+
Sbjct: 945  GTAFIGEPEEKLRKELEELGFKHTGREVMYDGITGRRLEADIFIGVIYYQRLHHMVADKM 1004

Query: 1050 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHIC 1109
              R+ GPV  LT+QP   R R GG++FGEMERD L+ HGAA  L ERL   SD  ++ +C
Sbjct: 1005 HARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVC 1064

Query: 1110 RKCKNVANVIQRVVGGGRKVRGP-YCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
              C ++A   +R        RG  YC +C   + I K  + Y  KLL  EL +M I
Sbjct: 1065 ENCGHIALEDKR--------RGKVYCPVCGEEERISKVEMSYAFKLLLDELKAMVI 1112


>gi|14520830|ref|NP_126305.1| DNA-directed RNA polymerase subunit B [Pyrococcus abyssi GE5]
 gi|5458046|emb|CAB49536.1| rpoB DNA-directed RNA polymerase, subunit B (EC 2.7.7.6) [Pyrococcus
            abyssi GE5]
 gi|380741372|tpe|CCE70006.1| TPA: DNA-directed RNA polymerase subunit beta [Pyrococcus abyssi GE5]
          Length = 1117

 Score =  520 bits (1339), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 388/1201 (32%), Positives = 602/1201 (50%), Gaps = 171/1201 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            S++ E GLV   ++SYN FI  GLQ+  D FG      G  P            ++FG++
Sbjct: 20   SYWQEKGLVRQHLDSYNAFIDRGLQEVVDEFG------GIKPDIPD------FEVKFGKI 67

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             + +P F   + G    ++P  AR++N+TYS+ + +++   +             G EQ 
Sbjct: 68   RVGEPEFQEPH-GQRKPLYPMDARIRNLTYSAPLYLEMIPVI------------RGIEQ- 113

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFIIKGAEKVF 205
                    E   + IG +P+M+KS +C + G+      + G+   D GGYFII G+E+V 
Sbjct: 114  --------EPVEVRIGELPIMLKSKVCRLYGLSDDELRQLGEDPKDPGGYFIINGSERVI 165

Query: 206  VAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVD-------MSKFEDIKGGEKVLS 258
            V+ E I   R  V          + + ++ + I ++         +   E  K G  +L 
Sbjct: 166  VSIEDIAPNRTLV----------EKDERQEKYIAKVFSYRHGYRALVTVERKKDG--ILY 213

Query: 259  VYFLSTEIPIWILFF--ALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRK 316
            V   +   P+  ++   ALG+  DK+IV   D    D  +  ILF ++ DA +   +   
Sbjct: 214  VGIPNVPKPVKFVYVMRALGLERDKDIV---DAVGNDPEVQQILFDNLEDASDITTQ--- 267

Query: 317  GRNALKYVDKLIKGTTFPPGES-------TEECMNTYLFPSLHGTKQ----KARFLGYMV 365
             + AL+Y+ KL+      PG++        E  ++  L P +  + +    KA +LG M 
Sbjct: 268  -QEALEYIGKLVA-----PGQAREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMA 321

Query: 366  KCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARK----RMAKALQRDLYG 421
              +++   G+R  D++D + NKRL LAG+LL+   +V  +   K    +M K  QR   G
Sbjct: 322  LKVIELSLGKRDEDDKDHYANKRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRR--G 379

Query: 422  DRTV-----RPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTL 476
            ++ V     R I   +   +LT  +  A +TGAW  P  RT    G+   L R N + TL
Sbjct: 380  EKYVFGNIHRFIRNSIRPDVLTERIEHALATGAW--PGGRT----GVSQLLDRTNYVSTL 433

Query: 477  VDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSIL-E 535
              LRR    +       +AR  H +HWG+IC   TP+G NCGLVKNL +   ++T++  E
Sbjct: 434  SHLRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEE 493

Query: 536  PIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQ 595
             + E L + G+  +  +        ++V+++G  IG  +D  + V  +++ RR  ++   
Sbjct: 494  EVKEYLMSLGIVPI--EVRRPSPELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDI 551

Query: 596  VEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGII 648
            + +   E   EV +  D GR+ RPL++VEN GK       +++++     +  L+  G+I
Sbjct: 552  INVAYYEDVREVYVNSDDGRVRRPLIIVEN-GKPKLTKEHVQAIKEGRLKWSDLVRMGVI 610

Query: 649  ELVGTEEEEDCCTA---WGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDH 705
            E +  EEEE+   A   W +             + TH EL  + +LGL   +IP+  H+ 
Sbjct: 611  EYLDAEEEENAYVAMWPWEVTE-----------EHTHLELMPAAILGLPASLIPYPEHNA 659

Query: 706  ARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHI 765
            A R  Y +   + Q++G    N  IRVDT  H L YPQ PL  + I   +G         
Sbjct: 660  APRNTYGA-GMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYED------ 712

Query: 766  LPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEM--Q 823
              RP    GQN +VAV  + GYN ED++++N+AS+ERG+ RS   R+Y+AE + K +  Q
Sbjct: 713  --RP---AGQNFVVAVLAYHGYNMEDAIIINKASIERGLARSTFFRTYEAE-EKKYLGGQ 766

Query: 824  VKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADS--------GA 875
              +         G    K  R   LD+DG  F  + ++  D++IG+ +          GA
Sbjct: 767  TDKFEIPSPTVRGYRGEKYYR--HLDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGA 824

Query: 876  -------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKG 928
                   + S+ ++ +ERG+V KV+++   DG     V++R +R P +GDKF+S HGQKG
Sbjct: 825  VSLQERRETSVAVRPSERGVVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKG 884

Query: 929  VLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKR 988
            V+G +  QE+ P+T  GIVPD+++NPH  PSR T GQLLEA  GK +AAL      G + 
Sbjct: 885  VIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGK-VAAL-----KGRRV 938

Query: 989  YATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDK 1048
              T F     + + ++L   GF   G E +YDG TG+   + IF+G  +YQRL HM  DK
Sbjct: 939  DGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFVGVIYYQRLHHMVADK 998

Query: 1049 VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHI 1108
            +  R+ GPV  LT+QP   R R GG++FGEMERD L+ HGAA  L ERL   SD  ++ +
Sbjct: 999  IHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWV 1058

Query: 1109 CRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
            C  C ++A   +R      KV   YC +C   + I K  + Y  KLL  EL +M I  K 
Sbjct: 1059 CENCGHIALEDKR----RHKV---YCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKL 1111

Query: 1169 D 1169
            +
Sbjct: 1112 N 1112


>gi|284998387|ref|YP_003420155.1| hypothetical protein [Sulfolobus islandicus L.D.8.5]
 gi|284446283|gb|ADB87785.1| conserved hypothetical protein [Sulfolobus islandicus L.D.8.5]
          Length = 1131

 Score =  520 bits (1339), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 381/1208 (31%), Positives = 589/1208 (48%), Gaps = 167/1208 (13%)

Query: 28   KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVE-PGYDPSKKGEGEWRYASM 86
            K   ++F   GLV   ++SYN+F++N LQ+  D  GE   E PG               +
Sbjct: 15   KVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEIPTEIPGL-------------KV 61

Query: 87   RFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKT 146
            R G++ + KP     + G E ++ P  ARL+N+TY++ + +       T   V ++    
Sbjct: 62   RLGKIRIGKPRVRESDRG-EREISPMEARLRNLTYAAPLWL-------TMIPVENN---- 109

Query: 147  GREQYIQKEVLSDETTNIIIGRIPVMVKSDL------CWMKGVEKGDCDFDHGGYFIIKG 200
                      +  E   + IG +P+M+KS +         K +E G+   D GGYFI+ G
Sbjct: 110  ----------IEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNG 159

Query: 201  AEKVFVAQEQICLKRLWVS-----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEK 255
            +E+V V QE +   R+ V      +++  T    S     R+ V +      E +K G  
Sbjct: 160  SERVIVTQEDLAPNRVLVDTGKTGSNITHTAKIISSTAGYRVPVTI------ERLKDGTF 213

Query: 256  VLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFR 315
             +S   +  +IP  IL  ALG+ +D++IV  +     D  I N LF S+  A +  +   
Sbjct: 214  HVSFPAVPGKIPFVILMRALGILTDRDIVYAVSL---DPEIQNELFPSLEQASSIANV-- 268

Query: 316  KGRNALKYVDKLIKGTTFPPG-------ESTEECMNTYLFPSLHGT----KQKARFLGYM 364
               +AL ++     G+    G       E  ++ ++ Y  P L  +    ++KA +L Y 
Sbjct: 269  --DDALDFI-----GSRVAIGQKRENRIEKAQQIIDKYFLPHLGTSADDRRKKAYYLAYA 321

Query: 365  VKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRT 424
            +  +++ Y GRR+ D++D + NKRL LAG+L     +V      K +   L++     R 
Sbjct: 322  ISKVIELYLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKSKVRGRK 381

Query: 425  VRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQ 484
            +  ++  +   I+T  +  A +TG W     RT    G+   L R N L  L  LRR   
Sbjct: 382  L-ALKALVRPDIVTERIRHALATGNWVG--GRT----GVSQLLDRTNWLSMLSHLRRVIS 434

Query: 485  QVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQ-LFN 543
             +       +AR  H + WG++C   TP+G N GLVKNL +   ++  I E I E+ L+ 
Sbjct: 435  SLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALMAQIAVGINERIVEKTLYE 494

Query: 544  SGMEKLADDA-SYSLGGK--------FKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPT 594
             G+  + +     + GG+         KV ++G  +G  +D      ++R +RR  E+  
Sbjct: 495  MGVVPVEEVIRRVTEGGEDQNEYLKWSKVILNGRLVGYYRDGEELAKKIRERRRNGEISD 554

Query: 595  QVEIKR--DELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHG 646
            +V +     +  +EV +  D+GR+ RPL++V N         I+ L+  + TF  L+  G
Sbjct: 555  EVNVGHIVTDFINEVHVNCDSGRVRRPLIIVSNGNPLVTREDIEKLDSGSITFDDLVRQG 614

Query: 647  IIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHA 706
             IE +  EEEE+        Y+  +  D  P + TH E+    +LG++  IIP+  H+ +
Sbjct: 615  KIEYLDAEEEENG-------YVALEPSDLTP-EHTHLEIWSPAILGITASIIPYPEHNQS 666

Query: 707  RRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHIL 766
             R  YQS   + QA+G    N  +R DT +H L YPQRPL +T   D +G          
Sbjct: 667  PRNTYQS-AMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQTRALDIIGYTN------- 718

Query: 767  PRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKR 826
             RP    G NAI+AV    GYN EDS++MNR+S+ERGM+RS   R Y  E    E++   
Sbjct: 719  -RPA---GNNAILAVISFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTE----EVKYPG 770

Query: 827  RSSDDMVN--------FGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA------- 871
               D +V          GK   ++     L+D+G       ++ GD++IGK +       
Sbjct: 771  GQEDKIVMPEPGVRGYKGKEYYRL-----LEDNGVVSPEVEVKGGDVLIGKVSPPRFLQE 825

Query: 872  -------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMH 924
                    +  D SI  +H E G+V  V+++   +G     V +R +R P +GDKF+S H
Sbjct: 826  FKELSPEQAKRDTSIVTRHGEMGIVDLVLITETAEGNKLVKVRVRDLRVPSIGDKFASRH 885

Query: 925  GQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICS 984
            GQKGV+G L  Q + P+T++G+VPDI++NPHA PSR T GQ++E   GK  AAL   I  
Sbjct: 886  GQKGVIGMLIPQVDMPYTVKGVVPDIILNPHALPSRMTLGQIMEGIAGK-YAALSGNIVD 944

Query: 985  GLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHM 1044
                 ATPF    ++ +  ++ + G+    TE  YDGR+G+ ++S I+ G  +YQ+L HM
Sbjct: 945  -----ATPFYKTPIEQLQNEILKYGYLPDATEVTYDGRSGQKIKSRIYFGVVYYQKLHHM 999

Query: 1045 SEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSY 1104
              DK+  R  GPV  LTRQP   R R GG++FGEMERDCLI  G A  L +RL   SD  
Sbjct: 1000 VADKIHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLIGFGTAMLLKDRLLDNSDRT 1059

Query: 1105 QMHICRKCKNVANVIQRVVGGGRKVRGPY-CRICDSGDDIVKANVPYGAKLLCQELFSMG 1163
             +++C +C          +G   K +  Y C I     ++    V Y  KLL QEL SM 
Sbjct: 1060 TIYVCDQCG--------YIGWYDKNKNKYICPIHGDKSNLFPVTVSYAFKLLIQELMSMI 1111

Query: 1164 ITLKFDTE 1171
            I+ +   E
Sbjct: 1112 ISPRLILE 1119


>gi|302814812|ref|XP_002989089.1| hypothetical protein SELMODRAFT_129173 [Selaginella moellendorffii]
 gi|300143190|gb|EFJ09883.1| hypothetical protein SELMODRAFT_129173 [Selaginella moellendorffii]
          Length = 766

 Score =  520 bits (1339), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 313/778 (40%), Positives = 444/778 (57%), Gaps = 80/778 (10%)

Query: 436  ILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDA 495
            I+T     AF  G W+ P       SG+V  L R N   TL  LR  R   QY+GKV D+
Sbjct: 13   IVTCDFRDAFKRGVWAEP---QTYGSGVVEALKRQNVTCTLAHLRHVRTPSQYSGKVNDS 69

Query: 496  RYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEP-IFEQLFNSGMEKLADDAS 554
            RYP+ SH G+ C + TP+GENCG +K L +  ++S+   E  + + L  SG  +  D+  
Sbjct: 70   RYPNKSHTGRFCPVETPEGENCGHLKTLALFAMISSYRDETDVLDNL--SGYLQDVDEVP 127

Query: 555  YSLGGKF-KVFVDGDWIGVCK--DSLSFVSELRRKRRR------KELPTQVEIKRDELQS 605
                  F KVF++G  +G+    ++ + V  LR +RRR      +   +QVEI  ++   
Sbjct: 128  LQQLHVFDKVFLNGRLLGLSTRDEAKAAVLHLRNRRRRGAIHSERLFSSQVEIAPNK-HG 186

Query: 606  EVRIFMDAGRILRPLLVVEN---------MGKIKSLEGKNYTFQALLDHGIIELVGTEEE 656
            E++IF D GR+LRP+ +VEN         + +++ L       + LL  G++EL+G EEE
Sbjct: 187  ELQIFTDGGRVLRPVFIVENNEWLLTDDNVSELRELSNGEEKVRFLLQEGLVELLGPEEE 246

Query: 657  EDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKH 716
            E C  A     L      +  I +TH EL  + +L ++   IPFA H+ + RV YQ+QKH
Sbjct: 247  EQCVIASRYSDL------RSGICYTHMELHPAAMLSITASTIPFAQHNLSTRVTYQAQKH 300

Query: 717  SSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQN 776
            S  AIG+ + NPS R DT S  LFYPQ+ L  T +   L           P  +L +GQ+
Sbjct: 301  SKHAIGYYSCNPSKRFDTTSDSLFYPQKQLVSTSMCRLLSPNDSAMMRGWPE-KLMHGQS 359

Query: 777  AIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFG 836
             +VAV  + GYNQEDSL+ N+A+++RG+FRS H R+++  ++        +SS++  +FG
Sbjct: 360  CVVAVACYDGYNQEDSLIFNQAAIDRGLFRSIHERTHRYNIN-------LQSSEE--SFG 410

Query: 837  KIQSKIG----RVDSLDDDGFPFIGANLQSGDIVIGKY----ADSGADHSIKLKHTERGM 888
            +   + G    R   LD+DGFP IGA LQS   VIGK       + ++ SI LK+ E G 
Sbjct: 411  RPVEEDGSPQQRYQHLDEDGFPEIGARLQSSQAVIGKTRKLKEGTVSNSSIFLKNFEEGS 470

Query: 889  VQKVV----LSSNDDGKNFSVVS-----------LRQVRSPCLGDKFSSMHGQKGVLGFL 933
            V++VV    ++      NF   S           +   R+P  GDKFSSMHGQKGV+G  
Sbjct: 471  VKEVVRLPKIAQGSHDVNFKTASASFPHGGVKVKIASTRAPQAGDKFSSMHGQKGVIGCC 530

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
             SQE+ PFT QGIVPD++INPHAFP+RQT GQ+LE+  GK  A        G++   TPF
Sbjct: 531  LSQEDLPFTRQGIVPDVIINPHAFPTRQTLGQMLESIAGKAAAM-------GVRVNTTPF 583

Query: 994  ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
            ++ S D +   LHR GF K G ER Y G  G M+++ IF+G  FYQ+L+ M++DK+K+R 
Sbjct: 584  SSASPDQLGAALHRCGFQKSGNERFYSGLYGSMIKAEIFVGVCFYQKLMQMADDKIKWRR 643

Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
             G    +TRQP+ DR+++GGIKF +MER  L+AHGAAA++ ER+F LSD +Q+ +C +C 
Sbjct: 644  IGRHDSITRQPIKDRQKYGGIKFSQMERSSLVAHGAAASIQERMFHLSDPHQVEVCTRCD 703

Query: 1114 NVANVIQRVVGGGRKVRGPYCRIC-DSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
             +A++       GR  R P CR C D      +  +PY  KLL QEL SMGI L+  T
Sbjct: 704  RMASI-------GRS-RAPSCRFCKDKFPGFARLEIPYSCKLLVQELNSMGIDLRLVT 753


>gi|227830880|ref|YP_002832660.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus
            L.S.2.15]
 gi|227457328|gb|ACP36015.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus L.S.2.15]
          Length = 1131

 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 380/1208 (31%), Positives = 588/1208 (48%), Gaps = 167/1208 (13%)

Query: 28   KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVE-PGYDPSKKGEGEWRYASM 86
            K   ++F   GLV   ++SYN+F++N LQ+  D  GE   E PG               +
Sbjct: 15   KVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEIPTEIPGL-------------KV 61

Query: 87   RFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKT 146
            R G++ + KP     + G E ++ P  ARL+N+TY++ + +       T   V ++    
Sbjct: 62   RLGKIRIGKPRVRESDRG-EREISPMEARLRNLTYAAPLWL-------TMIPVENN---- 109

Query: 147  GREQYIQKEVLSDETTNIIIGRIPVMVKSDL------CWMKGVEKGDCDFDHGGYFIIKG 200
                      +  E   + IG +P+M+KS +         K +E G+   D GGYFI+ G
Sbjct: 110  ----------IEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNG 159

Query: 201  AEKVFVAQEQICLKRLWVS-----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEK 255
            +E+V V QE +   R+ V      +++  T    S     R+ V +      E +K G  
Sbjct: 160  SERVIVTQEDLAPNRVLVDTGKTGSNITHTAKIISSTAGYRVPVTI------ERLKDGTF 213

Query: 256  VLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFR 315
             +S   +  +IP  IL  ALG+ +D++IV  +     D  I N LF S+  A +  +   
Sbjct: 214  HVSFPAVPGKIPFVILMRALGILTDRDIVYAVSL---DPEIQNELFPSLEQASSIANV-- 268

Query: 316  KGRNALKYVDKLIKGTTFPPG-------ESTEECMNTYLFPSLHGT----KQKARFLGYM 364
               +AL ++     G+    G       E  ++ ++ Y  P L  +    ++KA +L Y 
Sbjct: 269  --DDALDFI-----GSRVAIGQKRENRIEKAQQIIDKYFLPHLGTSADDRRKKAYYLAYA 321

Query: 365  VKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRT 424
            +  +++ Y GRR+ D++D + NKRL LAG+L     +V      K +   L++     R 
Sbjct: 322  ISKVIELYLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKSKVRGRK 381

Query: 425  VRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQ 484
            +  ++  +   I+T  +  A +TG W     RT    G+   L R N L  L  LRR   
Sbjct: 382  L-ALKALVRPDIVTERIRHALATGNWVG--GRT----GVSQLLDRTNWLSMLSHLRRVIS 434

Query: 485  QVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQ-LFN 543
             +       +AR  H + WG++C   TP+G N GLVKNL +   ++  I E I E+ L+ 
Sbjct: 435  SLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALMAQIAVGINERIVEKTLYE 494

Query: 544  SGMEKLADDA-SYSLGGK--------FKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPT 594
             G+  + +     + GG+         KV ++G  +G  +D      ++R +RR  E+  
Sbjct: 495  MGVVPVEEVIRRVTEGGEDQNEYLKWSKVILNGRLVGYYRDGEELAKKIRERRRNGEISD 554

Query: 595  QVEIKR--DELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHG 646
            +V +     +  +EV +  D+GR+ RPL++V N         I+ L+  + TF  L+  G
Sbjct: 555  EVNVGHIVTDFINEVHVNCDSGRVRRPLIIVSNGNPLVTREDIEKLDSGSITFDDLVRQG 614

Query: 647  IIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHA 706
             IE +  EEEE+        Y+  +  D  P + TH E+    +LG++  IIP+  H+ +
Sbjct: 615  KIEYLDAEEEENA-------YVALEPSDLTP-EHTHLEIWSPAILGITASIIPYPEHNQS 666

Query: 707  RRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHIL 766
             R  YQS   + QA+G    N  +R DT +H L YPQRPL +T   D +G          
Sbjct: 667  PRNTYQS-AMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQTRALDIIGYTN------- 718

Query: 767  PRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKR 826
             RP    G NAI+AV    GYN EDS++MNR+S+ERGM+RS   R Y  E    E++   
Sbjct: 719  -RPA---GNNAILAVISFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTE----EVKYPG 770

Query: 827  RSSDDMVN--------FGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA------- 871
               D +V          GK   ++     L+D+G       ++ GD++IGK +       
Sbjct: 771  GQEDKIVMPEPGVRGYKGKEYYRL-----LEDNGVVSPEVEVKGGDVLIGKVSPPRFLQE 825

Query: 872  -------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMH 924
                    +  D SI  +H E G+V  V+++   +G     V +R +R P +GDKF+S H
Sbjct: 826  FKELSPEQAKRDTSIVTRHGEMGIVDLVLITETAEGNKLVKVRVRDLRVPSIGDKFASRH 885

Query: 925  GQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICS 984
            GQKGV+G L  Q + P+T++G+VPDI++NPHA PSR T GQ++E   GK  AAL   I  
Sbjct: 886  GQKGVIGMLIPQVDMPYTVKGVVPDIILNPHALPSRMTLGQIMEGIAGK-YAALSGNIVD 944

Query: 985  GLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHM 1044
                Y TP     ++ +  ++ + G+    TE  YDGR+G+ ++S I+ G  +YQ+L HM
Sbjct: 945  ATPIYKTP-----IEQLQNEILKYGYLPDATEVTYDGRSGQKIKSRIYFGVVYYQKLHHM 999

Query: 1045 SEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSY 1104
              DK+  R  GPV  LTRQP   R R GG++FGEMERDCLI  G A  L +RL   SD  
Sbjct: 1000 VADKIHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLIGFGTAMLLKDRLLDNSDRT 1059

Query: 1105 QMHICRKCKNVANVIQRVVGGGRKVRGPY-CRICDSGDDIVKANVPYGAKLLCQELFSMG 1163
             +++C +C          +G   K +  Y C I     ++    V Y  KLL QEL SM 
Sbjct: 1060 TIYVCDQCG--------YIGWYDKNKNKYICPIHGDKSNLFPVTVSYAFKLLIQELMSMI 1111

Query: 1164 ITLKFDTE 1171
            I+ +   E
Sbjct: 1112 ISPRLILE 1119


>gi|302804103|ref|XP_002983804.1| hypothetical protein SELMODRAFT_118653 [Selaginella moellendorffii]
 gi|300148641|gb|EFJ15300.1| hypothetical protein SELMODRAFT_118653 [Selaginella moellendorffii]
          Length = 762

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 311/774 (40%), Positives = 443/774 (57%), Gaps = 74/774 (9%)

Query: 436  ILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDA 495
            I+T     AF  G W+ P       SG+V  L R N   TL  LR  R   QY+GKV D+
Sbjct: 13   IVTCDFRDAFKRGVWAQP---QTYGSGVVEALKRQNVTCTLAHLRHVRTPSQYSGKVNDS 69

Query: 496  RYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEP-IFEQLFNSGMEKLADDAS 554
            RYP+ SH G+ C + TP+GENCG +K L +  ++S+   E  + + L  SG  +  D+  
Sbjct: 70   RYPNKSHTGRFCPVETPEGENCGHLKTLALFAMISSHRDETDVLDNL--SGYLQDVDEVP 127

Query: 555  YSLGGKF-KVFVDGDWIGVCK--DSLSFVSELRRKRRRKELPTQVEIKR-DELQSEVRIF 610
                  F KVF++G  +G+    ++ + V  LR +RRR  + ++V +        E++IF
Sbjct: 128  LQQLHVFDKVFLNGRLLGLSTRDEAKAAVLHLRNRRRRGAIHSEVRVLTFPAFHGELQIF 187

Query: 611  MDAGRILRPLLVVEN---------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCT 661
             D GR+LRP+ +VEN         + ++  L       + LL  G++EL+G EEEE C  
Sbjct: 188  TDGGRVLRPVFIVENNEWLLTDDNVSELHGLNNGEEKVRFLLQEGLVELLGPEEEEQCVI 247

Query: 662  AWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAI 721
            A     L      +  I++TH EL  + +L ++   IPFA H+ + RV YQ+QKHS  AI
Sbjct: 248  ASRYSDL------RSGIRYTHMELHPAAMLSITASTIPFAQHNLSTRVTYQAQKHSKHAI 301

Query: 722  GFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAV 781
            G+ + NPS R DT S  LFYPQ+ L  T +   L           P  +L +GQ+ +VAV
Sbjct: 302  GYYSCNPSKRFDTTSDSLFYPQKQLVSTSMCRLLSPNDSAMMRGWPE-KLMHGQSCVVAV 360

Query: 782  NVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSK 841
              + GYNQEDSL+ N+A+++RG+FRS H R+++  ++        +SS++  +FG+   +
Sbjct: 361  ACYDGYNQEDSLIFNQAAIDRGLFRSIHERTHRYNIN-------LQSSEE--SFGRPVEE 411

Query: 842  IG----RVDSLDDDGFPFIGANLQSGDIVIGKY----ADSGADHSIKLKHTERGMVQKVV 893
             G    R   LD+DGFP IGA LQS   VIGK       + ++ SI LK+ E G V++VV
Sbjct: 412  DGSPQQRYQHLDEDGFPEIGARLQSSQAVIGKTRKLKEGTVSNSSIFLKNFEEGSVKEVV 471

Query: 894  L-------SSNDDGKNFSV--------VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQEN 938
                    S + + K  S         V +   R+P  GDKFSSMHGQKGV+G   SQE+
Sbjct: 472  RLPKIAQGSHDVNVKTASASFPHGGVKVKIASTRAPQAGDKFSSMHGQKGVIGCCLSQED 531

Query: 939  FPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSV 998
             PFT QGIVPD++INPHAFP+RQT GQ+LE+  GK  A        G++   TPF++ S 
Sbjct: 532  LPFTRQGIVPDVIINPHAFPTRQTLGQMLESIAGKAAAM-------GVRVNTTPFSSASP 584

Query: 999  DAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVH 1058
            D +   LHR GF K G ER Y G  G M+++ IF+G  FYQ+L+ M++DK+K+R  G   
Sbjct: 585  DQLGAALHRCGFQKSGNERFYSGLYGSMIKAEIFVGVCFYQKLMQMADDKIKWRRIGRHD 644

Query: 1059 PLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANV 1118
             +TRQP+ DR+++GGIKF +MER  L+AHGAAA++ ER+F LSD +Q+ +C +C  +A++
Sbjct: 645  SITRQPIKDRQKYGGIKFSQMERSSLVAHGAAASIQERMFHLSDPHQVEVCTRCDRMASI 704

Query: 1119 IQRVVGGGRKVRGPYCRIC-DSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                   GR  R P CR C D      +  +PY  KLL QEL SMGI L+  T+
Sbjct: 705  -------GRS-RAPSCRFCKDKFPGFARLEIPYSCKLLVQELNSMGIDLRLVTD 750


>gi|260944180|ref|XP_002616388.1| hypothetical protein CLUG_03629 [Clavispora lusitaniae ATCC 42720]
 gi|238850037|gb|EEQ39501.1| hypothetical protein CLUG_03629 [Clavispora lusitaniae ATCC 42720]
          Length = 858

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 315/876 (35%), Positives = 468/876 (53%), Gaps = 94/876 (10%)

Query: 364  MVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDR 423
            MV  LL     R++ D+RD F  KRL+LAG LL    ++      + +   +QR +  D+
Sbjct: 1    MVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRLLFKKLTRDIYNYMQRCVENDK 60

Query: 424  TVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTR 483
                +   + +  +T+GL  + +TG W    K     +G+   L R     TL  LRRT 
Sbjct: 61   EFN-LTLAVKSQTITDGLRYSLATGNWGEQKKAMSARAGVSQVLNRYTYSSTLSHLRRTN 119

Query: 484  QQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLF 542
              +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  +  EPI   L 
Sbjct: 120  TPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTASEPILYFLE 179

Query: 543  NSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
              GME L D    +     +VFV+G W+G  ++    V  +RR RR+ ++  +V I RD 
Sbjct: 180  EWGMEPLEDYVPSNSPDCTRVFVNGVWVGTHREPAQLVDTMRRLRRKGDISPEVSIIRDI 239

Query: 603  LQSEVRIFMDAGRILRPLLVV----------------ENMGKIKSLE---------GKNY 637
             + E +IF DAGR+ RPL +V                E++ K+ + E            Y
Sbjct: 240  REREFKIFTDAGRVYRPLFIVDDDPESETKGDLVLQKEHIHKLINSEYDEYDEESQANAY 299

Query: 638  TFQALLDHGIIELVGTEEEEDCCTAW------------------GIKYLLKDIEDKKPIK 679
            T+ +L++ G++E V  EEEE    A                    ++   ++++  K IK
Sbjct: 300  TWSSLVNDGVVEYVDAEEEETIMIAMTPDDLEASKSSLSETQQKSLQLEEQELDPAKRIK 359

Query: 680  ---------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSI 730
                     FTHCE+  S +LG++  IIPF +H+ + R  YQS     QA+G   TN S+
Sbjct: 360  PTYTSSTHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAM-GKQAMGVFLTNYSV 418

Query: 731  RVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQE 790
            R+DT+++ L+YPQ+PL  T   +            L   EL  GQNAIVA+  + GYNQE
Sbjct: 419  RMDTMANILYYPQKPLATTRSME-----------YLKFRELPAGQNAIVAIACYSGYNQE 467

Query: 791  DSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDD 850
            DS++MN++S++RG+FRS   RSY  +++ ++      + +       ++ K G  + LDD
Sbjct: 468  DSMIMNQSSIDRGLFRSLFFRSY-MDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDD 526

Query: 851  DGFPFIGANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLS 895
            DG    G  +   DI+IGK                  +  D S  L+ TE G+V +V+L+
Sbjct: 527  DGLIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLT 586

Query: 896  SNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPH 955
            +N DG  F  V +R  + P +GDKF+S HGQKG +G     E+ PF+ QGIVPD++INPH
Sbjct: 587  TNGDGAKFVKVRMRTTKIPQIGDKFASRHGQKGTIGVTYRHEDMPFSAQGIVPDLIINPH 646

Query: 956  AFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGT 1015
            A PSR T   L+E  L K +++L     SGL+  A+PF   + +A+++ L   G+   G 
Sbjct: 647  AIPSRMTVAHLIECLLSK-VSSL-----SGLEGDASPFTDVTAEAVSKLLREHGYQSRGF 700

Query: 1016 ERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIK 1075
            E +Y+G TG+ + + +F GPT+YQRL HM +DK+  R  GPV  LTRQPV  R R GG++
Sbjct: 701  EVMYNGHTGKKLMAQVFFGPTYYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLR 760

Query: 1076 FGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCR 1135
            FGEMERDC+IAHGAA  L ERL   SD++++H+C  C  + +VI  +     K     CR
Sbjct: 761  FGEMERDCMIAHGAAGFLKERLMEASDAFRVHVCGIC-GLMSVIANL-----KKNQFECR 814

Query: 1136 ICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
             C +  +I + ++PY AKLL QEL +M I+ +  TE
Sbjct: 815  SCKNKTNIYQIHIPYAAKLLFQELMAMNISPRLYTE 850


>gi|6606113|gb|AAF19069.1|AF107797_1 DNA-dependent RNA polymerase II RPB140 [Capronia mansonii]
          Length = 1029

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 340/991 (34%), Positives = 513/991 (51%), Gaps = 117/991 (11%)

Query: 261  FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNA 320
            ++  +IP+ I+F AL + SD +I+  I F   D  ++++L  S+        E +  + A
Sbjct: 73   YVKQDIPLVIVFRALDIVSDADILEKICFDQSDKEMMDMLMGSLQ-------EGQPIQGA 125

Query: 321  LKYVDKLIKGTTFPPGESTE------ECMNTYLFPSL----HGTKQKARFLGYMVKCLLQ 370
                D + +    P  +S E      + +     P +      T +KA FLGYMV  LL+
Sbjct: 126  DLARDFIARRGNVPSLKSHERQKHATDILQKEFLPHIGQGPDATARKAFFLGYMVNRLLK 185

Query: 371  AYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEY 430
               GR + D+RD    KRL+LAG L+    ++    A K   + +Q+ +   + +  I  
Sbjct: 186  CALGRAEPDDRDHLGKKRLDLAGPLMTNLFRLQFDKATKDFYRYMQKRVESGQPIN-IMA 244

Query: 431  YLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTG 490
                 I+T+GL  + +TG W    K  +  +G+   L R     TL  LRRT   +   G
Sbjct: 245  GFKHPIITSGLKYSLATGNWGDQKKLDKAKAGVSQVLSRYTFSSTLSHLRRTNAPIGREG 304

Query: 491  KVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-LEPIFEQLFNSGMEKL 549
            K+   R  H +HWG +C   TP+G+ CGLVKNL +  +V+ S    P+   +    +E L
Sbjct: 305  KIAKPRQLHNTHWGYVCPAETPEGQACGLVKNLSLMSMVTNSYETGPLLNYVMTKHVEAL 364

Query: 550  ADDASYSLGGKFKVFVDGDWIGVC-KDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVR 608
             D          K+FVDG W  V  +D    V +LR+ RR+    + V +  D  + E +
Sbjct: 365  EDWEPRLNPRATKIFVDGVWFAVVLRDPKRLVDDLRKLRRKGVFDSHVSLVWDIREKEFK 424

Query: 609  IFMDAGRILRPLLVVE------NMGKIK----------------------SLEGKNYTFQ 640
            I  D+GRI+RPL VVE      N+G +                       + E + Y + 
Sbjct: 425  ISGDSGRIVRPLFVVETDRSSENLGNLVLNKEHINKLDQTAYLKESGFQWTDEIRPYGWT 484

Query: 641  ALLDHGIIELVGTEEEED---CCTAWGI-----KYLLKDIEDKK-PIK------------ 679
             LL+ G++E +  EEEE    C T   +     ++L  +IE++  P++            
Sbjct: 485  DLLESGVVEYLDAEEEETAMICMTPEALADSKARWLGMEIENEDDPLRRNDPLLNPHAHT 544

Query: 680  FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQL 739
            FTHCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN   R++T+++ L
Sbjct: 545  FTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAM-GKQAMGVFLTNFDQRMETMANIL 603

Query: 740  FYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRAS 799
            +YPQ+PL RTM  D            L   EL  GQNAIVA+  + GYNQEDS++MN++S
Sbjct: 604  YYPQKPLARTMAMD-----------YLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSS 652

Query: 800  LERGMFRSEHIRSY----KAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPF 855
            ++RG+FRS   R+Y    K+   +   Q ++ +  D +       K G  D +D+DG   
Sbjct: 653  IDRGLFRSLFYRTYQDSEKSVGHSVVEQFEKPTRSDTLRL-----KHGTYDKIDEDGIVA 707

Query: 856  IGANLQSGDIVIGKYADSGADH---------------SIKLKHTERGMVQKVVLSSNDDG 900
             G  +   DI++GK A    D                S  L+ TE G+V +V+L++  +G
Sbjct: 708  PGVRVSGEDIIMGKTAPMAPDAEELGQRLKQHIKRDVSTPLRSTESGIVDQVMLTTTAEG 767

Query: 901  KNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSR 960
              F+ V +R  + P +GDKF+S HGQKG +G     E+ PFT +GIVPD++INPHA PSR
Sbjct: 768  HRFAKVRVRTTKVPQIGDKFASRHGQKGTIGITYRHEDMPFTREGIVPDLIINPHAIPSR 827

Query: 961  QTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYD 1020
             T   L+E  L K +A L      G +  ATPF   +V  ++E L   G+   G E +Y+
Sbjct: 828  MTIAHLIECQLSK-VATL-----RGDEGDATPFTKVTVTQVSELLRTMGYQSRGFEVMYN 881

Query: 1021 GRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEME 1080
            G TG  + + +F+GPT+YQRL HM +DK+  R  GP   LTRQPV  R R GG++FGEME
Sbjct: 882  GHTGRKMVAQVFLGPTYYQRLRHMVDDKIHSRARGPTQILTRQPVEGRARDGGLRFGEME 941

Query: 1081 RDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSG 1140
            RDC+IAHGA++ L ERLF +SD +++H+C  C  +  VI ++     K     C+ C++ 
Sbjct: 942  RDCMIAHGASSFLKERLFDVSDPFRVHVCDIC-GLMTVIAKL-----KKNTFECKNCNNK 995

Query: 1141 DDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
            + I +  +PY AKLL QEL++M I  +  T+
Sbjct: 996  NKISQIYLPYAAKLLFQELWAMNIAARLYTK 1026


>gi|332157775|ref|YP_004423054.1| DNA-directed RNA polymerase subunit B [Pyrococcus sp. NA2]
 gi|331033238|gb|AEC51050.1| DNA-directed RNA polymerase subunit B [Pyrococcus sp. NA2]
          Length = 1117

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 387/1198 (32%), Positives = 600/1198 (50%), Gaps = 165/1198 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            S++ E GLV   ++SYN FI+ GLQ+  D  G      G  P            ++FG++
Sbjct: 20   SYWQEKGLVRQHLDSYNAFIERGLQEVVDEVG------GIKPDIPD------FEVKFGKI 67

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             + +P F   +G     ++P  AR++N+TYS+ + +++   +             G EQ 
Sbjct: 68   RVGEPEFQEPHG-QRKPLYPMDARIRNLTYSAPLYLEMIPVI------------RGVEQ- 113

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
                    +   + IG +P+M+KS +C + G      ++ G+   D GGYFII G+E+V 
Sbjct: 114  --------DPVEVRIGELPIMLKSKVCRLYGLSDEELIKLGEDPKDPGGYFIINGSERVI 165

Query: 206  VAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVD-------MSKFEDIKGGEKVLS 258
            V+ E I   R  V          + + ++ R I ++         +   E  K G  +L 
Sbjct: 166  VSIEDIAPNRTLV----------EKDERQERYIAKVFSYRHGYRALVTVERKKDG--ILY 213

Query: 259  VYFLSTEIPIWILFF--ALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRK 316
            V   +   P+  ++   ALG+  DK+IV   D    D  +  ILF ++ DA +   +   
Sbjct: 214  VGIPNVPRPVKFVYVMRALGLERDKDIV---DAVGNDPEVQQILFDNLEDASDITTQ--- 267

Query: 317  GRNALKYVDKLIKGTTFPPGES-------TEECMNTYLFPSLHGTKQ----KARFLGYMV 365
             + AL+Y+ KL+      PG++        E  ++  L P +    +    KA +LG M 
Sbjct: 268  -QEALEYIGKLVA-----PGQAREYRLKRAEYVIDNNLLPHMGVNPEDRIRKAYYLGMMA 321

Query: 366  KCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARK----RMAKALQRDLYG 421
              +++   G+R  D++D + NKRL LAG+LL+   +V      K    +M K  QR   G
Sbjct: 322  LKVIELSLGKRGEDDKDHYANKRLRLAGDLLKDLFRVAFNQLVKDIQYQMTKTYQRR--G 379

Query: 422  DRTV-----RPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTL 476
            ++ V     R I   +   +LT  +  A +TGAW  P  RT    G+   L R N + T+
Sbjct: 380  EKYVFGNIHRFIRNSIRPDVLTERIEHALATGAW--PGGRT----GVSQLLDRTNYVSTM 433

Query: 477  VDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEP 536
              LRR    +       +AR  H +HWG+IC   TP+G NCGLVKNL +   ++T++ E 
Sbjct: 434  SHLRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEE 493

Query: 537  -IFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQ 595
             + E L + G+  +  +        ++V+++G  IG  +D  + V ++R  RR  ++   
Sbjct: 494  EVREYLMSLGIVPI--EVRRPSPELWRVYLNGVLIGTVEDGKALVEKIRSDRRSGKISDI 551

Query: 596  VEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGII 648
            + +   E   EV +  D GR+ RPL++VEN GK       +++++     +  L+  G+I
Sbjct: 552  INVAYYEDVKEVYVNSDDGRVRRPLIIVEN-GKPKLTKEHVQAIKEGRLKWSDLIKMGVI 610

Query: 649  ELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARR 708
            E +  EEEE+   A     + K+         TH EL  + +LGL   +IP+  H+ A R
Sbjct: 611  EYLDAEEEENAYVAMWPWEVTKE--------HTHLELMPAAILGLPASLIPYPEHNAAPR 662

Query: 709  VLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPR 768
              Y +   + Q++G    N  IRVDT  H L YPQ PL  + I   +G           R
Sbjct: 663  NTYGA-GMAKQSLGIGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYED--------R 713

Query: 769  PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEM--QVKR 826
            P    GQN +VAV  + GYN ED++++N+AS+ERG+ RS   R+Y+AE + K +  Q  +
Sbjct: 714  P---AGQNFVVAVLAYQGYNMEDAIIINKASIERGLARSTFFRTYEAE-EKKYLGGQTDK 769

Query: 827  RSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADS--------GA--- 875
                     G    K  R   LD+DG  F  + ++  D++IG+ +          GA   
Sbjct: 770  FEIPSPTVRGYRGEKYYR--HLDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSL 827

Query: 876  ----DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLG 931
                + S+ ++ +E+G+V KV+++   DG     V++R +R P +GDKF+S HGQKGV+G
Sbjct: 828  QERRETSVAVRPSEKGIVDKVIITETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIG 887

Query: 932  FLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYAT 991
             +  QE+ P+T  GIVPD+++NPH  PSR T GQLLEA  GK +AAL      G +   T
Sbjct: 888  LIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLLEAIGGK-VAAL-----KGRRVDGT 941

Query: 992  PFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKF 1051
             F     + + ++L   GF   G E +YDG TG+   + IFIG  +YQRL HM  DK+  
Sbjct: 942  AFIGEPEEKLRKELEELGFKHTGREIMYDGITGKRFEADIFIGVIYYQRLHHMVADKIHA 1001

Query: 1052 RNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRK 1111
            R+ GPV  LT+QP   R R GG++FGEMERD L+ HGAA  L ERL   SD  ++ +C  
Sbjct: 1002 RSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVCEN 1061

Query: 1112 CKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFD 1169
            C ++A   +R      KV   YC +C   + I K  + Y  KLL  EL +M I  K +
Sbjct: 1062 CGHIALEDKR----RHKV---YCPVCGEEERISKVEMSYAFKLLLDELKAMCIRPKLN 1112


>gi|212223363|ref|YP_002306599.1| DNA-directed RNA polymerase subunit B [Thermococcus onnurineus NA1]
 gi|212008320|gb|ACJ15702.1| Subunit B of DNA-dependent RNA polymerase [Thermococcus onnurineus
            NA1]
          Length = 1120

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 385/1201 (32%), Positives = 590/1201 (49%), Gaps = 178/1201 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +++ E GLV   ++SYN FI  G+Q+  + FG      G  P            ++FG++
Sbjct: 20   AYWKEKGLVRQHLDSYNAFIDYGMQQVINEFG------GIKPDIPD------FEVKFGKI 67

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             L +P F    G     ++P  AR++N+TYS+ + +++   V                  
Sbjct: 68   RLGEPEFQEAQG-QRKPLYPMDARIRNLTYSAPLYLELIPVVNG---------------- 110

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
                 ++ E   + IG +P+M+KS  C + G      ++ G+   D GGYFII G+E+V 
Sbjct: 111  -----IAQEPVEVRIGELPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFIINGSERVI 165

Query: 206  VAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVR----------LVDMSKFEDIKGGEK 255
            V+ E +   +  V          + + ++NR+I +          L+ + + +D      
Sbjct: 166  VSIEDLAPNKTLV----------ERDERQNRIIAKCFSYRHGYRALITVERRKD-----G 210

Query: 256  VLSVYFLSTEIPIWILFF--ALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDE 313
            +L V   +   P+  ++   ALG+ SDKEIV  +    +D  I  +LF ++ DA +    
Sbjct: 211  ILYVNIPNVPRPVKFVYVMRALGLESDKEIVEAV---SDDPRIQQVLFDNLEDASDIMSR 267

Query: 314  FRKGRNALKYVDKLIKGTTFPPGES-------TEECMNTYLFPSL----HGTKQKARFLG 362
                  AL Y+ KL       PG+         E  ++  L P +       + KA +LG
Sbjct: 268  ----EEALDYIGKLAL-----PGQPKEYRLRRAEHIIDNNLLPHMGVEEKDRRAKAYYLG 318

Query: 363  YMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARK----RMAKALQRD 418
             M   +L+   G R  D++D + NKRL+LAG+LL    +V      K    +M K  QR 
Sbjct: 319  MMALKVLELSLGLRGEDDKDHYANKRLKLAGDLLRDLFRVAFGQLVKDMQYQMTKTYQRK 378

Query: 419  LYGDR-TVRPIEYYLDASI----LTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPL 473
              G+R T   I+ ++  SI    L+  +  A +TGAW  P  RT    G+   L R N +
Sbjct: 379  --GERYTFENIQRFVRNSIRPDVLSERIEHALATGAW--PGGRT----GVSQLLDRTNYM 430

Query: 474  QTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI 533
             TL  LRR    +       +AR  H +HWG+IC   TP+G NCGLVKNL +   ++T I
Sbjct: 431  STLSHLRRVTSPLSRDQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTGI 490

Query: 534  LEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELP 593
             E       N       ++   SL   ++V+++G  IG  +D    V  +R  RR   + 
Sbjct: 491  PEEEVRDYLNRLGVVPIEEKRPSLE-LWRVYLNGVLIGTVEDGERLVKRIRADRRSGRIS 549

Query: 594  --TQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDH 645
                V I +DE   E+ +  D GR+ RPL++VEN         ++ ++    T+  L+  
Sbjct: 550  DVINVAIYQDEEVKEIYVNSDDGRVRRPLIIVENGQPKLTREHVEGIKNGTLTWSDLIKM 609

Query: 646  GIIELVGTEEEEDCCTA---WGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFAN 702
            G+IE +  EEEE+   A   W +             + TH EL  + +LG+   ++P+  
Sbjct: 610  GVIEYLDAEEEENAYVATWPWEVT-----------AEHTHLELMPAAILGIPASLVPYPE 658

Query: 703  HDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGH 762
            H+ A R  Y +   + Q++G    N  IRVDT  H + YPQ PL  + I   +G      
Sbjct: 659  HNAAPRNTYGA-GMAKQSLGLGWANFRIRVDTRGHFMHYPQVPLVNSRIMKAVG------ 711

Query: 763  NHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEM 822
                 RP    GQN +VAV  + GYN ED+++MN+AS+ERG+ RS   R+Y+AE + + +
Sbjct: 712  --FEERP---AGQNFVVAVLSYQGYNMEDAIIMNKASIERGLARSTFFRTYEAE-EKRYL 765

Query: 823  --QVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA-------DS 873
              Q  R    D    G +  K  R   LD+DG  F  + ++  D+++G+ +        S
Sbjct: 766  GGQTDRFEVPDPTIQGYLGEKYYR--HLDEDGIIFPESKVEGKDVLVGRTSPPRFLEEQS 823

Query: 874  GA---------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMH 924
            G          + S+ ++ +E+G+V KV+++   DG     V++R +R P  GDKF+S H
Sbjct: 824  GLGGIILQERRETSVAVRPSEKGIVDKVIITETGDGTKLVKVTVRDLRIPEFGDKFASRH 883

Query: 925  GQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICS 984
            GQKGV+G +  QE+ P+T  GIVPD+++NPH  PSR T GQL+EA  GK +A+L      
Sbjct: 884  GQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGK-VASL-----K 937

Query: 985  GLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHM 1044
            G +   T F     + + ++L   GF   G E +YDG TG  + + IF+G  +YQRL HM
Sbjct: 938  GRRVDGTAFIGEPEERLRKELEELGFKHSGREVMYDGITGRRLEADIFVGVIYYQRLHHM 997

Query: 1045 SEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSY 1104
              DK+  R+ GPV  LT+QP   R R GG++FGEMERD LI HGAA  L ERL   SD  
Sbjct: 998  VADKMHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLIGHGAAMLLIERLLEESDKT 1057

Query: 1105 QMHICRKCKNVANVIQRVVGGGRKVRGP-YCRICDSGDDIVKANVPYGAKLLCQELFSMG 1163
            ++  C  C ++A   +R        RG  YC +C   + I K  + Y  KLL  EL +MG
Sbjct: 1058 EVWACESCGHLALEDKR--------RGKVYCPVCGEEEKISKVEMSYAFKLLLDELKAMG 1109

Query: 1164 I 1164
            I
Sbjct: 1110 I 1110


>gi|430811324|emb|CCJ31247.1| unnamed protein product [Pneumocystis jirovecii]
          Length = 1167

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 375/1212 (30%), Positives = 588/1212 (48%), Gaps = 184/1212 (15%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETI--VEPGYDPSKKGEGEWRYASMRFG 89
            +F    GL+    +S+N F+   L+K   +  + I  VEP           W Y  +++ 
Sbjct: 59   AFLKVKGLIKQHTDSFNYFVDVDLKKIVKANEKVISDVEP-----------WFY--LKYI 105

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
             + +  P+         + + P   RL+++TYS+ + V +++              T  +
Sbjct: 106  DIQVGFPTR-QDQDAINNSIAPHECRLRDLTYSAPIMVDIEY--------------TRGK 150

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWM------KGVEKGDCDFDHGGYFIIKGAEK 203
            Q ++++        + IGR+P+M++S+ C +      + +   +C  D GGYFI+KG EK
Sbjct: 151  QVVRRK-------GVQIGRLPIMLRSNKCILFNKTETQIIRMNECPLDPGGYFIVKGTEK 203

Query: 204  VFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLS----V 259
            V + QEQ+   R+ V          ++E K+   +V+   +S   + K    VL+    +
Sbjct: 204  VILVQEQLSKNRIIV----------EAEPKKG--LVQASVISSTHERKSKTYVLTKNAKI 251

Query: 260  YF----LSTEIPIWILFFALGVSSDKEIVNLI---DFTCEDCSILNILFASIHDADNKCD 312
            Y     ++ ++PI ++F A+G  SD+EI+ LI   D   +D   +NI          +C 
Sbjct: 252  YLKHNSIAEDVPIVLIFKAMGFQSDQEILELIAGSDPNYQDMFAINI---------EECA 302

Query: 313  EFR--KGRNALKYVDKLIK--------GTTFPPGESTEECMNTYLFPSLH----GTKQKA 358
            + +    + AL+Y+   +K            PP E   E +   +   +       + K 
Sbjct: 303  KLKIYTQQQALEYLGARVKISRKNSELSQRRPPSEEALEVLAAIVLAHIPVENLNFRPKI 362

Query: 359  RFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLE-----------RELKVHIAHA 407
             +   M + +L A    +  D+RD   NKRLELAG+LL            R LK++I   
Sbjct: 363  IYFAIMTRRVLMAIKNPKMVDDRDYVGNKRLELAGQLLSLLFEDLFKTFNRNLKLNIDKV 422

Query: 408  RKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANL 467
             K+  +  + D Y   ++           +T+G+ RA STG WS    + ER +G+   L
Sbjct: 423  LKKPNRTQEFDAYNQISIH-------GDHITSGMIRAISTGNWSLKRFKMER-AGVTHVL 474

Query: 468  GRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-T 526
             R + +  L  + R   Q + T K+   R   PS +G +C   TP+GE+CGL+KNL + T
Sbjct: 475  SRLSYISALGMMTRISSQFEKTRKISGPRALQPSQFGMLCPSDTPEGESCGLIKNLALMT 534

Query: 527  GLVSTSILEPIFEQLFNSGMEKLADDASYSLG------GKFKVFVDGDWIGVCKDSLSFV 580
             + + +  EPI +  F  G E+   D S   G      G + ++++G  +G+ +    FV
Sbjct: 535  HITTDNDEEPIEKLAFVLGTEE--KDISLITGHELYAPGTYVIYLNGIILGITRFPTIFV 592

Query: 581  SELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLE 633
            S  R+ RR+ ++   + I  +   S V I  D GRI RPL++VEN GK       +++L+
Sbjct: 593  SNFRKLRRKGQISEFISIHINHHYSSVHIASDGGRICRPLIIVEN-GKSKVTSQHLEALK 651

Query: 634  GKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGL 693
                TF   L  G++E +   EE D   +          E+K     TH E++   +LG 
Sbjct: 652  AGKMTFDDFLKRGLVEYLDVNEENDSYISI--------YENKISESTTHLEIEPFTILGA 703

Query: 694  SCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISD 753
              G+IP+ +H+ + R  YQ      QAIG    N  +R+D+L + + YPQ+PL +T   D
Sbjct: 704  VAGLIPYPHHNQSPRNTYQC-AMGKQAIGAIAWNQLLRIDSLLYLMIYPQQPLVKTKTID 762

Query: 754  CLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSY 813
             +G             +L  GQNAI+AV    GY+ ED+L++N+AS++RG  R + IR Y
Sbjct: 763  LIG-----------YDKLPAGQNAIIAVMSFSGYDIEDALILNKASIDRGFGRCQVIRKY 811

Query: 814  KAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADS 873
               +         R      N G +  K    ++L++DG   +G  ++SG I I K   +
Sbjct: 812  ATTIKRYANGSYDRLEGPSRNEGDVAWK---YEALEEDGLAGVGEKIESGQIYINKQIPT 868

Query: 874  GAD----------HSIKLKHT-------ERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCL 916
             A+          H +  K +       E G + K++L++ D  +      +RQ R P L
Sbjct: 869  NANDNTIATRIQQHELSWKASPMIYKSFEPGYIDKIMLTTTDSDQTLIKCLVRQTRRPEL 928

Query: 917  GDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIA 976
            GDKFSS HGQKGV G +  QE+ PF   GI PDI++NPH FPSR T G+++E   GK   
Sbjct: 929  GDKFSSRHGQKGVCGLIVQQEDMPFDQNGITPDIIMNPHGFPSRMTVGKMIELLAGKA-- 986

Query: 977  ALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPT 1036
                G+ SG  +Y T F    +D +++ L   G+S  G + L  G TGE +++ IF GP 
Sbjct: 987  ----GVLSGTLQYGTAFGGSKIDDMSQILIENGYSYSGKDELTSGITGESLQAYIFFGPI 1042

Query: 1037 FYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHER 1096
            +YQ+L HM  DK+  R  GP   LTRQP   R R GG++ GEMERDCLIA+GA+  L ER
Sbjct: 1043 YYQKLKHMVLDKMHARARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLER 1102

Query: 1097 LFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLC 1156
            L   SD++++ IC  C            G    +G +C  C S  D+VK  +PY AKLL 
Sbjct: 1103 LMLSSDAFKVDICEAC------------GLIGYKG-WCNRCKSTKDVVKLTIPYAAKLLF 1149

Query: 1157 QELFSMGITLKF 1168
            QEL SM I  K 
Sbjct: 1150 QELISMNIIPKL 1161


>gi|70606496|ref|YP_255366.1| DNA-directed RNA polymerase subunit B [Sulfolobus acidocaldarius DSM
            639]
 gi|449066708|ref|YP_007433790.1| DNA-directed RNA polymerase subunit B [Sulfolobus acidocaldarius N8]
 gi|449068982|ref|YP_007436063.1| DNA-directed RNA polymerase subunit B [Sulfolobus acidocaldarius
            Ron12/I]
 gi|73920765|sp|P11513.2|RPOB_SULAC RecName: Full=DNA-directed RNA polymerase subunit B
 gi|68567144|gb|AAY80073.1| DNA directed RNA polymerase subunit B [Sulfolobus acidocaldarius DSM
            639]
 gi|449035216|gb|AGE70642.1| DNA-directed RNA polymerase subunit B [Sulfolobus acidocaldarius N8]
 gi|449037490|gb|AGE72915.1| DNA-directed RNA polymerase subunit B [Sulfolobus acidocaldarius
            Ron12/I]
          Length = 1126

 Score =  518 bits (1333), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 391/1207 (32%), Positives = 585/1207 (48%), Gaps = 154/1207 (12%)

Query: 21   FLKTFCRKA-AVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVE-PGYDPSKKGE 78
             L T  R A A SFF   GLV   ++S+N+F++N LQ+     GE + E PG        
Sbjct: 1    MLDTESRWAIAESFFKTRGLVRQHLDSFNDFLRNKLQQVIYEQGEIVTEVPGL------- 53

Query: 79   GEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKR 138
                   ++ G++  +KPS    + G   ++ P  ARL+N+TYSS + + +         
Sbjct: 54   ------KIKLGKIRYEKPSIRETDKGPMREITPMEARLRNLTYSSPIFLSM--------- 98

Query: 139  VTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVK------SDLCWMKGVEKGDCDFDH 192
                      E  I+ E +      I IG +P+M+K      S+L   K +E G+   D 
Sbjct: 99   -------IPVENNIEGEPIE-----IYIGDLPIMLKSVADPTSNLPIDKLIEIGEDPKDP 146

Query: 193  GGYFIIKGAEKVFVAQEQICLKRLWVS-NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIK 251
            GGYFI+ G+EKV +AQE +   R+ V     G  + + ++   +    R+  M   E +K
Sbjct: 147  GGYFIVNGSEKVIIAQEDLATNRVLVDYGKSGSNITHVAKVTSSAAGYRVQVM--IERLK 204

Query: 252  GGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKC 311
                 +S   +   IP  I+  ALG  +D++IV  +     D  I N L  S+  A +  
Sbjct: 205  DSTIQISFATVPGRIPFAIIMRALGFVTDRDIVYAVSL---DPQIQNELLPSLEQASS-- 259

Query: 312  DEFRKGRNALKYVDKLIKGTTFPPG-------ESTEECMNTYLFPSLHGT-----KQKAR 359
                    AL ++     G     G       +  E+ ++ Y  P L GT     K+K  
Sbjct: 260  --ITSAEEALDFI-----GNRVAIGQKRENRIQKAEQVIDKYFLPHL-GTSPEDRKKKGY 311

Query: 360  FLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDL 419
            +L   V  +L+ Y GRR+ D++D + NKR+ LAG+L     +V      K +   L++  
Sbjct: 312  YLASAVNKILELYLGRREPDDKDHYANKRVRLAGDLFTSLFRVAFKAFVKDLVYQLEKSK 371

Query: 420  YGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDL 479
               R +  +   + A I+T  +  A +TG W     RT    G+   L R N L  L  L
Sbjct: 372  VRGRRLS-LTALVRADIITERIRHALATGNWVG--GRT----GVSQLLDRTNWLSMLSHL 424

Query: 480  RRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFE 539
            RR    +       +AR  H + WG++C   TP+G N GLVKNL +   VS  I E + E
Sbjct: 425  RRVVSSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALLAQVSVGINESVVE 484

Query: 540  QL-FNSGMEKLAD----------DASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRR 588
            ++ +  G+  + D          D    +    KV+++G  +G  +D      ++R  RR
Sbjct: 485  RVAYELGVVSVEDVIRRISEQNEDVEKYMSWS-KVYLNGRLLGYYEDGKELAKKIRESRR 543

Query: 589  RKELPTQVEIK--RDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQ 640
            + +L  +V +     +  +EV I  DAGR+ RPL++V N         IK L+    TF 
Sbjct: 544  QGKLSDEVNVAYIATDYLNEVHINCDAGRVRRPLIIVNNGTPLVDTEDIKKLKNGEITFD 603

Query: 641  ALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPF 700
             L+  G IE +  EEEE+   A   + L  D         TH E+  S +LG+   IIP+
Sbjct: 604  DLVKQGKIEFIDAEEEENAYVALNPQDLTPD--------HTHLEIWPSAILGIIASIIPY 655

Query: 701  ANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGY 760
              H+ + R  YQS   + Q++G   +N  IR DT +H L YPQ PL +T +   LG  GY
Sbjct: 656  PEHNQSPRNTYQS-AMAKQSLGLYASNYQIRTDTRAHLLHYPQMPLVQTRM---LGVIGY 711

Query: 761  GHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNK 820
                   RP    G NAI+A+  + GYN EDS++MN++S+ERGM+RS   R Y  E    
Sbjct: 712  ND-----RPA---GANAILAIMSYTGYNMEDSIIMNKSSIERGMYRSTFFRLYSTE---- 759

Query: 821  EMQVKRRSSDDMVN-FGKIQSKIGR--VDSLDDDGFPFIGANLQSGDIVIGKYA------ 871
            E++      D +V     ++   G+     L+D+G       ++ GD++IGK +      
Sbjct: 760  EVKYPGGQEDKIVTPEAGVKGYKGKDYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQ 819

Query: 872  --------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSM 923
                     +  D SI  +H E G+V  V+++   +G     V +R +R P +GDKF++ 
Sbjct: 820  EFKELSPEQAKRDTSIVTRHGENGIVDLVLITETLEGNKLVKVRVRDLRIPEIGDKFATR 879

Query: 924  HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGIC 983
            HGQKGV+G L  Q + P+T +GIVPDI++NPHA PSR T GQ++EA  GK  A  GK + 
Sbjct: 880  HGQKGVVGILIDQVDMPYTAKGIVPDIILNPHALPSRMTIGQIMEAIGGKYAALSGKPVD 939

Query: 984  SGLKRYATPF-ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLI 1042
                  ATPF  TP +  + +++ + G     TE +YDGRTG+ ++S I  G  +YQ+L 
Sbjct: 940  ------ATPFLETPKLQEMQKEILKLGHLPDSTEVVYDGRTGQKLKSRILFGIVYYQKLH 993

Query: 1043 HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSD 1102
            HM  DK+  R  GPV  LTRQP   R R GG++FGEMERDCLI  G A  + +RL   SD
Sbjct: 994  HMVADKMHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLIGFGTAMLIKDRLLDNSD 1053

Query: 1103 SYQMHICRKCKNVANVIQRVVGGGRKVRGPY-CRICDSGDDIVKANVPYGAKLLCQELFS 1161
               ++IC +C          VG   + +  Y C +      +    V Y  KLL QEL S
Sbjct: 1054 KAVVYICDQCG--------YVGWYDRSKNRYVCPVHGDKSVLHPVTVSYAFKLLIQELMS 1105

Query: 1162 MGITLKF 1168
            M I+ + 
Sbjct: 1106 MVISPRL 1112


>gi|268323371|emb|CBH36959.1| DNA-directed RNA polymerase subunit B [uncultured archaeon]
          Length = 1131

 Score =  518 bits (1333), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 383/1207 (31%), Positives = 582/1207 (48%), Gaps = 155/1207 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWR---YASMRF 88
            ++     +V HQ++S+N F+  G+Q+  D        P  + S  GE E +      ++F
Sbjct: 10   AYLKREKIVQHQLDSFNYFLDEGIQRIIDEL------PYTETSISGEDEEKGKYKLGVKF 63

Query: 89   GQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGR 148
            G++T+  P     +G  E D+FP  ARL+N+ YS+ + + +Q            K+++G 
Sbjct: 64   GKITVGIPKAREADGSYE-DIFPSQARLRNLNYSAPIILDMQL---------VKKYESG- 112

Query: 149  EQYIQKEVLSDETTNIIIGRIPVMVKSDLC----------------------WMKGVEKG 186
                + E++ DE   + IG +P+M+KS+ C                      W+K  E G
Sbjct: 113  ----EIEIVRDEEA-VAIGELPIMLKSNRCNLSKVVIQEKLGKDLSEPEYEDWLKN-EAG 166

Query: 187  DCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVS-----NSMGWTVAYKSENKRNRLIVRL 241
            +   D GGYFII G+E V +  E +   R++V+      S G      S N+  R+ +R 
Sbjct: 167  EDPLDPGGYFIINGSEHVIITLEDLAPNRIFVNFEEKYGSKGVVSKVFSLNQGFRVPIR- 225

Query: 242  VDMSKFEDIKGGEKVLSVYF--LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNI 299
            V++SK    KG   +L V F  +  +I    L  ALG+ SD+EI+  +    +D  I+  
Sbjct: 226  VEISK----KG---ILEVSFPAVGRKIQFMTLIRALGLESDEEIIKAV---SDDPQIVKY 275

Query: 300  LFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEE-------CMNTYLFPSLH 352
            +  +I + D    E        + ++KL  G    P ++ E         ++ Y  P L 
Sbjct: 276  VLENIEECDVDTQE--------EAIEKL--GRKIAPTQAREYRERRVNYILDRYFLPHLD 325

Query: 353  GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMA 412
                KA F+G M +   + Y G+R   ++D + NKRL+LAG+L+E   +V      + M 
Sbjct: 326  TKIAKAYFIGRMAESCYELYLGKRGEGDKDHYANKRLKLAGDLVEDLFRVSFTKLTRDMR 385

Query: 413  KALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANP 472
              L+R     R ++ I   + + +LT  +  A +TG W          +G+   L R+N 
Sbjct: 386  YQLERANMRSRELK-IATAIRSDVLTERIVHALATGNWVGGR------AGVSQLLERSNY 438

Query: 473  LQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTS 532
            + TL  LRR    +  +    +AR  HP+ WGKIC   TP+G NCGLVKN      +S  
Sbjct: 439  IATLSHLRRIISPLSRSQPHFEARDLHPTQWGKICPSETPEGPNCGLVKNFSQMVEISVG 498

Query: 533  ILEPIFEQ-LFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKE 591
              E  F+  L+  G+   A     S   + +VFV+GD+IG   +   FV  +R+KRR  E
Sbjct: 499  EDEKSFKDILYELGVIPPARSLEISAESRTRVFVNGDFIGFSTEPEIFVDAVRKKRRSDE 558

Query: 592  LPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENM------GKIKSLEGKNYTFQALLDH 645
            + TQV I     QS++ I  D GR  RP++VVEN        +I+ L      F  L+  
Sbjct: 559  ISTQVNIAYYRDQSDIIINSDRGRARRPVMVVENKTPLLTESQIEKLRKGEMNFDDLVSV 618

Query: 646  GIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDH 705
            G+IE +  EEEE+   A     L K+  +     +TH ELD S +LG+  G+IP+ +H+ 
Sbjct: 619  GVIEYLDAEEEENALIALNESDLTKEGGNG----YTHLELDPSLILGIVAGLIPYPDHNS 674

Query: 706  ARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHI 765
            + R          Q++G  T N   R DT +H L  PQ+PL  T  +D +      H   
Sbjct: 675  SPRNTMGC-AMLKQSLGLSTANYKTRADTRTHLLHSPQKPLVTTRTADLIQ-----HGR- 727

Query: 766  LPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVK 825
              RP    GQN +VAV  + GYN ED+L++N+A+++RG+ RS   R+Y+ E        +
Sbjct: 728  --RPA---GQNFVVAVLSYEGYNMEDALILNQAAIDRGLGRSHFFRTYEGE--------E 774

Query: 826  RR---SSDDMVNFGKIQSKIGR----VDSLDDDGFPFIGANLQSGDIVIGKYAD------ 872
            RR     +D+     ++    R       LDD G       +   D++IGK +       
Sbjct: 775  RRYPGGEEDIFEIPDVEIVGVRSHDAYQQLDDAGIINSEVEVVPNDVLIGKTSPPRFLEE 834

Query: 873  --------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMH 924
                       D SI  +  ERG V  VVL  +   +    V++R  + P +GDKF+S H
Sbjct: 835  TTELLSPLERRDTSICTRANERGRVDSVVLMESSSNRRLIKVAVRDQKIPEVGDKFASRH 894

Query: 925  GQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICS 984
            GQKGV+G +   E+ PFT  GI+PD++INPHA PSR T G +LE   GK  A  G+ I  
Sbjct: 895  GQKGVIGLIARPEDMPFTEGGIIPDMIINPHAIPSRMTVGHVLEMIGGKVGALEGRYID- 953

Query: 985  GLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHM 1044
                  + F+      + + L RAGFS  G E ++DG  G  + + +F+G  +YQ+L H+
Sbjct: 954  -----GSAFSGEKEVDLRDALVRAGFSDTGREMMWDGLKGTKIDADVFVGVVYYQKLYHL 1008

Query: 1045 SEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSY 1104
               K+  R  GPV  LTRQP   + R GG++FGEMERD LI +GAA  L +RL   SD  
Sbjct: 1009 VSAKMHARARGPVQILTRQPTEGKAREGGLRFGEMERDVLIGYGAAITLKDRLLNESDRV 1068

Query: 1105 QMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
               +C  C  +A           K    YC  C +  DI    + Y  KLL  E+ ++GI
Sbjct: 1069 VELVCGNCGMIA-------CRDMKTGSSYCPNCGADTDIYPVEMSYAFKLLLDEMKALGI 1121

Query: 1165 TLKFDTE 1171
              + + E
Sbjct: 1122 APRLELE 1128


>gi|429217659|ref|YP_007175649.1| DNA-directed RNA polymerase subunit B [Caldisphaera lagunensis DSM
            15908]
 gi|429134188|gb|AFZ71200.1| DNA-directed RNA polymerase subunit B [Caldisphaera lagunensis DSM
            15908]
          Length = 1172

 Score =  518 bits (1333), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 378/1191 (31%), Positives = 572/1191 (48%), Gaps = 142/1191 (11%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMR--FGQ 90
            + +E GL    ++S+N F+K  LQK  DS+GE  + P +   KK E       +R   G+
Sbjct: 20   YIHENGLSRQHLDSFNSFVKERLQKIIDSYGE--IRPAFKQVKKNEISEEGPDIRVVLGR 77

Query: 91   VTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
            + +  P     +G +   + P  AR++N+TYS  + +++               + G E 
Sbjct: 78   IKILDPQIKEADG-NTRLITPAEARIRNLTYSGPLYLEMAL------------IENGNE- 123

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKV 204
             I++E L        I   P+MVKS +  +        + KG+  +D GGYFII G+E+V
Sbjct: 124  -IEREELK-------IADFPIMVKSVVDPISKYKEDELINKGEDPYDPGGYFIINGSERV 175

Query: 205  FVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLST 264
             VAQE + + R+ V  S   T       K    ++ L      + +  G   LS+  L  
Sbjct: 176  IVAQEDLAVNRIIVGLSTANTAKITHTAKVVSTVLGLRRQVIVDRMNDGTLELSMSRLGY 235

Query: 265  EIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYV 324
             IP  ++  ALG+  D EI   + F   D  I   L  S           +   +AL+Y+
Sbjct: 236  RIPFVVMMKALGLEKDAEIAASVSF---DSDIQRELLPSFEKV---AFTIKTTEDALEYI 289

Query: 325  DKLIKGTTFPPGES-------TEECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYS 373
                 G    PG+         E+ ++    P L       K+KA FLG M   +LQ Y 
Sbjct: 290  -----GNRLAPGQPREIRIARAEDFIDNQFLPHLGNKPEDRKKKAYFLGEMANRVLQLYL 344

Query: 374  GRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLD 433
             +R  D++D + NKRL LAG+L+    +         ++  L+  +   + +R + + + 
Sbjct: 345  NKRGEDDKDHYSNKRLRLAGDLIAEIFRDAFQQFVNTVSSQLEEYISQRKKLR-LRFLVR 403

Query: 434  ASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVG 493
            + I+T  +  A +TG W      T+  +G+   L R N +  L  LRR    +       
Sbjct: 404  SDIITERIRAALATGNW------TQNRTGVSQALDRTNWISLLSHLRRVISPLSRGQTHF 457

Query: 494  DARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLF-NSG------- 545
            +AR  H +HWG++C   TP+G NCGLVKNL +   +S  + E   E++  N G       
Sbjct: 458  EARDLHGTHWGRLCPFETPEGINCGLVKNLALMTYISVGVDEKEVERILRNQGVILMDEI 517

Query: 546  --MEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIK--RD 601
              M    +D +  +    KVF++G  IG  ++      +LR  RR+ EL  +V I   ++
Sbjct: 518  IKMSSENNDITNLVNNGAKVFLNGSPIGYVENGDELARKLRDMRRKGELSFEVGISLIKE 577

Query: 602  ELQSEVRIFMDAGRILRPLLVV---------ENMGKIKSLEGKNYTFQALLDHGIIELVG 652
               +EV I  D GR+LRPL+VV         E + K+K+ E    +F  L+  G+IE + 
Sbjct: 578  GNTNEVYINTDEGRLLRPLIVVDKGKPRLTKEMVSKVKNGE---LSFWDLVRMGVIEFID 634

Query: 653  TEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 712
             +EEE+   A  I+ +  D         TH EL ++ + G++   IPF  H+ + R  YQ
Sbjct: 635  PDEEENAIVAERIEDINNDT--------THLELWVTGIFGVAASTIPFLEHNQSPRNTYQ 686

Query: 713  SQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELY 772
            S   + QA+G    N ++RVD+  + L YPQRP+ +T     L + GY       RP   
Sbjct: 687  S-AMAKQALGLYALNYNLRVDSHGYLLHYPQRPIVQTR---HLEEMGYNQ-----RP--- 734

Query: 773  NGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRR---SS 829
            +GQN I+A     GYN ED+++ N+ S++ G+ R+   R Y +  ++    +  R    S
Sbjct: 735  SGQNFILAFMSFTGYNIEDAIIFNKTSIDMGLGRAHFFRVYASTENDYPGGLSDRITVPS 794

Query: 830  DDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD---------------SG 874
              + +    Q  I     L  DG     A +  GD+++G+ +                S 
Sbjct: 795  PKLYDHKGDQYYI----KLGPDGIVEPEAEVVGGDVLVGRESPPRFIGEERVIGPGVLSK 850

Query: 875  ADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLE 934
             D S++L++ E G+V  V ++   +      V +R +R P LGDKF+S HGQKGV+G L 
Sbjct: 851  RDTSVQLRYGESGVVDTVFITQTSERNKLVKVKVRDLRIPELGDKFASRHGQKGVVGMLF 910

Query: 935  SQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFA 994
             + + P+T  GI PDI++NPH  PSR T GQLLE    K  A LGK I        TPF 
Sbjct: 911  PRYDMPYTEDGITPDIIVNPHGIPSRMTVGQLLELVTAKAGALLGKYID------GTPFY 964

Query: 995  TPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNT 1054
               ++ +   L + GF   G E +YDGRTG ++ + I IG  FYQRL HM  DK+  R T
Sbjct: 965  KEDINNLQLVLVKKGFDPNGKEVMYDGRTGRLIENTITIGIAFYQRLYHMVSDKMHARAT 1024

Query: 1055 GPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKN 1114
            G V  LTRQP   + R GG++FGEMERDCL+ +GA   L +R+   SD Y MH+C  C +
Sbjct: 1025 GKVQLLTRQPTEGKARQGGLRFGEMERDCLVGYGATMMLRDRMLENSDLYVMHVCNLCGH 1084

Query: 1115 VANVIQRVVGGGRKVRGPY-CRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
            +A    +        RG Y C I     DI    VPY  KL  QE+ SMG+
Sbjct: 1085 IAWYNSK--------RGIYECPIHGDSGDIRPIKVPYAFKLFLQEIISMGV 1127


>gi|389852853|ref|YP_006355087.1| DNA-directed RNA polymerase subunit B [Pyrococcus sp. ST04]
 gi|388250159|gb|AFK23012.1| DNA-directed RNA polymerase subunit B [Pyrococcus sp. ST04]
          Length = 1117

 Score =  517 bits (1332), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 384/1201 (31%), Positives = 597/1201 (49%), Gaps = 171/1201 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            S++ E GLV   ++SYN FI+ GLQ+  + FG      G  P    + E ++  +R GQ 
Sbjct: 20   SYWQEKGLVRQHLDSYNAFIERGLQEVVNEFG------GIKPDIP-DFEVKFGKIRVGQP 72

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
               +P       G    ++P  AR++N+TYS+ + +++   +             G EQ 
Sbjct: 73   EFQEPH------GQRKPLYPMDARIRNLTYSAPLYLEMIPVI------------RGIEQ- 113

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
                    E   + IG +P+M+KS +C + G      ++ G+   D GGYFII G+E+V 
Sbjct: 114  --------EPVEVRIGELPIMLKSKVCRLYGLSDEELIKLGEDPKDPGGYFIINGSERVI 165

Query: 206  VAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVD-------MSKFEDIKGGEKVLS 258
            V+ E I   R  V          + + ++ R + ++         +   E  K G  +L 
Sbjct: 166  VSIEDIAPNRTLV----------EKDERQERYVAKVFSYRHGYRALVTVERKKDG--ILY 213

Query: 259  VYFLSTEIPIWILFF--ALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRK 316
            V   +   PI  ++   ALG+  D++IV   D    D  +  ILF ++ DA +   +   
Sbjct: 214  VGIPNVPKPIKFVYVMRALGLERDRDIV---DAVGNDPEVQQILFDNLEDASDITTQ--- 267

Query: 317  GRNALKYVDKLIKGTTFPPGES-------TEECMNTYLFPSLHGTKQ----KARFLGYMV 365
             + AL+Y+ KL+      PG++        E  ++  L P +    +    KA +LG M 
Sbjct: 268  -QEALEYIGKLVA-----PGQAREYRLKRAEYVIDNNLLPHMGVNPEDRIRKAYYLGMMA 321

Query: 366  KCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARK----RMAKALQRDLYG 421
              +++   GRR  D++D + NKRL LAG+LL+   +V      K    +M K  QR   G
Sbjct: 322  LKVIELSLGRRDEDDKDHYANKRLRLAGDLLKDLFRVAFGQLVKDIQYQMTKTYQRK--G 379

Query: 422  DRTV-----RPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTL 476
            ++       R I   +   +LT  +  A +TGAW  P  RT    G+   L R N + TL
Sbjct: 380  EKYTFGNIHRFIRNSIRPDVLTERIEHALATGAW--PGGRT----GVSQLLDRTNYVSTL 433

Query: 477  VDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSIL-E 535
              LRR    +       +AR  H +HWG+IC   TP+G NCGLVKNL +   ++T++  E
Sbjct: 434  SHLRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMSQITTAVPEE 493

Query: 536  PIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQ 595
             + E L + G+  +  +        ++V+++G  IG  +D  +    +R+ RR  ++   
Sbjct: 494  EVKEYLMSLGIVPI--EVRRPSPELWRVYLNGVLIGTIEDGKALAQRIRQDRRNGKISDV 551

Query: 596  VEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGII 648
            + +   E   EV +  D GR+ RPL++VEN GK       +++++     +  L+  G+I
Sbjct: 552  INVAYYEDVKEVYVNSDDGRVRRPLIIVEN-GKPKLTKEHVQAVKEGRLKWSDLIRMGVI 610

Query: 649  ELVGTEEEEDCCTA---WGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDH 705
            E +  EEEE+   A   W +             + TH EL  + +LGL   ++P+  H+ 
Sbjct: 611  EYLDAEEEENAYVAMWPWEVTE-----------EHTHLELMPAAILGLPASLVPYPEHNA 659

Query: 706  ARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHI 765
            A R  Y +   + Q++G    N  IRVDT  H L YPQ PL  + I   +G         
Sbjct: 660  APRNTYGA-GMAKQSLGLGWANFRIRVDTRGHLLHYPQVPLVDSRIMKAVGYED------ 712

Query: 766  LPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEM--Q 823
              RP    GQN IVAV  + GYN ED++++N+AS+ERG+ RS   R+Y+AE + K +  Q
Sbjct: 713  --RP---AGQNFIVAVLAYQGYNMEDAIIINKASIERGLARSTFFRTYEAE-EKKYLGGQ 766

Query: 824  VKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA------------ 871
              +         G    K  R  +LD+DG  F  + ++  D++IG+ +            
Sbjct: 767  TDKFEIPAPTVRGYRGEKYYR--NLDEDGLIFPESRVEGKDVLIGRTSPPRFLEERGLGS 824

Query: 872  ---DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKG 928
                   + S+ ++ +E+G+V KV+++   DG     V++R +R P LGDKF+S HGQKG
Sbjct: 825  VALQERRETSVAVRPSEKGVVDKVIITETGDGTKLVKVTVRDLRIPELGDKFASRHGQKG 884

Query: 929  VLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKR 988
            V+G +  QE+ P+T  GIVPD+++NPH  PSR T GQL+EA  GK +A+L      G + 
Sbjct: 885  VIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGK-VASL-----KGRRV 938

Query: 989  YATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDK 1048
              T F     + + ++L   GF   G E +YDG TG  + + IF+G  +YQRL HM  DK
Sbjct: 939  DGTAFIGEPEEKLRKELEELGFKHTGREIMYDGITGRRLEADIFVGVIYYQRLHHMVADK 998

Query: 1049 VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHI 1108
            +  R+ GPV  LT+QP   R R GG++FGEMERD L+ HGAA  L ERL   SD  ++ +
Sbjct: 999  IHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWV 1058

Query: 1109 CRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
            C  C ++A   +R      KV   YC +C   + I K  + Y  KLL  EL +M I  K 
Sbjct: 1059 CENCGHIAIEDKR----RHKV---YCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKL 1111

Query: 1169 D 1169
            +
Sbjct: 1112 N 1112


>gi|343427664|emb|CBQ71191.1| probable DNA-directed RNA polymerase III, 130 KD subunit [Sporisorium
            reilianum SRZ2]
          Length = 1170

 Score =  517 bits (1331), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 365/1207 (30%), Positives = 575/1207 (47%), Gaps = 162/1207 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN F+ + L+    +  E I     DP            +++  +
Sbjct: 56   AFLQVKGLVKQHIDSYNYFVDHDLKNIIKA-NEKITS-DIDPK---------FYLKYTDI 104

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
            T+ +P  + G+   +  + P   RL+++TYS+ + V +++              T   + 
Sbjct: 105  TVGEPRRYDGDAL-QRPITPHECRLRDITYSAHIFVNIEY--------------TRGGKI 149

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
            I+++       N+ IGRIPVM++S+ C +         +  +C  D GGYF++KG EKV 
Sbjct: 150  IRRK-------NVAIGRIPVMLRSNKCVLANKSEKELAKMSECPLDPGGYFVVKGTEKVI 202

Query: 206  VAQEQICLKRLWVS-----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVY 260
            + QEQ+   R+ V       ++  +V   +  ++++  V           K G+  L   
Sbjct: 203  LVQEQLSKNRIIVEADTKKGTVSASVTSSTHERKSKSYVL---------TKHGKIYLKHN 253

Query: 261  FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNA 320
             L  +IPI + F A+G+ +D+EI+ L+        I   LFA   +   +   + + + A
Sbjct: 254  SLHEDIPIAVAFKAMGIQADREILQLV---AGHDDIHKELFAINLEEAARLGIYTR-KQA 309

Query: 321  LKYVDKLIKGTT------FPPGESTEECMNTYLFPSLH----GTKQKARFLGYMVKCLLQ 370
            L Y+    K +        P  E   + + T +   +       + KA ++  MV+ +L 
Sbjct: 310  LDYIGARAKASRKPLSMRRPLAEEALDVLATVIMAHVPVERLNFRPKAIYIASMVRRVLM 369

Query: 371  AYSGRRKCDNRDDFRNKRLELAGELL-----------ERELKVHIAHARKRMAKALQRDL 419
            A    +K D+RD   NKRLELAG+LL             +LK++I    K+  + ++ D 
Sbjct: 370  AMQDEKKVDDRDYVGNKRLELAGQLLALLFEDLFKKFNSDLKINIDKVLKKPNRTVEFDA 429

Query: 420  YGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDL 479
            +        +++ +   +T G  RA STG WS    + ER +GI   L R + +  L  +
Sbjct: 430  FN-------QFHFNGDYITAGFVRAISTGNWSLKRFKMER-AGITHVLSRLSFIAALGMM 481

Query: 480  RRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIF 538
             R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +T  ++T + E PI 
Sbjct: 482  TRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALTTHITTDVEEEPIA 541

Query: 539  EQLFNSGME--KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQV 596
               F  G+E   L   A       + V+++G+ +GV +    FV + RR RR   +   V
Sbjct: 542  RIAFTLGVEDIHLLTGAELYRPDSYVVYLNGNVLGVTRFPQRFVHQFRRLRRAGRISEFV 601

Query: 597  EIKRDELQSEVRIFMDAGRILRPLLVVENM--------GKIKSLEGKNYTFQALLDHGII 648
             +  +     V I  D GRI RPL++V+ +          ++ L+     F   L +G+I
Sbjct: 602  SVYTNNHHQTVYIASDGGRICRPLIIVDAVTGQPRVTESHMRQLKSGARRFDDFLSNGLI 661

Query: 649  ELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARR 708
            E V   EE D   A   + +       KP   TH E++   LLG   G+IP+ +H+ + R
Sbjct: 662  EYVDVNEENDANIAMYEREI-------KPQYTTHLEIEPFTLLGAVAGLIPYPHHNQSPR 714

Query: 709  VLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPR 768
              Y     + QA GF   N  +R+DTL + + YPQ+P+ ++   + +G            
Sbjct: 715  NTYHCAM-AKQAQGFIGHNQLVRIDTLLYLMLYPQQPMVKSRTVELVG-----------Y 762

Query: 769  PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRS 828
             +L  G NA++AV    GY+ ED+LV+N+ASL+RG  RS+ ++     +         R 
Sbjct: 763  DKLPGGTNAMLAVMSFSGYDIEDALVLNKASLDRGFGRSQTMKKSSTVIRKYPNGTHDRL 822

Query: 829  SDDMVN--FGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHS-------- 878
            +D  V+   GK Q    R D L+ DG   +G  ++ GD+ + K     A+ +        
Sbjct: 823  ADAPVDDSTGKRQK---RYDILEADGIAGVGERVEQGDVYVNKQTPVNANDNSSAAIMIG 879

Query: 879  --------------IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMH 924
                          +  K    G V +V+++  D  +      +RQ R P LGDKFSS H
Sbjct: 880  ASNAAASVAYKSAPLSYKPPVSGYVDQVLITDTDSDQTLIKALIRQTRRPELGDKFSSRH 939

Query: 925  GQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICS 984
            GQKGV+G +  QE+ PFT +GI PDI++NPH FPSR T G+++E   GK       G+ +
Sbjct: 940  GQKGVIGLIVQQEDMPFTDEGINPDIIMNPHGFPSRMTVGKMIELLSGKA------GVVT 993

Query: 985  GLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHM 1044
            G  +Y T F    VD ++  L   G++  G E L  G TG+ +   ++ GP +YQRL HM
Sbjct: 994  GTLQYGTAFGGSKVDDMSALLVEHGYNYAGKETLTSGITGQPLECYVYFGPIYYQRLKHM 1053

Query: 1045 SEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSY 1104
             +DK+  R  GP   LTRQP   R R GG++ GEMERDCLI +GA   L ERL   SD++
Sbjct: 1054 VQDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGATQLLLERLMISSDAF 1113

Query: 1105 QMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
             +H C++C             G      +C  C S   +V+  +PYG KL+ QEL +M +
Sbjct: 1114 TVHACQRC-------------GLMGYNGFCPYCSSSKHVVQLTIPYGTKLMLQELMAMQV 1160

Query: 1165 TLKFDTE 1171
              +   E
Sbjct: 1161 VPRLVLE 1167


>gi|337283877|ref|YP_004623351.1| DNA-directed RNA polymerase subunit beta [Pyrococcus yayanosii CH1]
 gi|334899811|gb|AEH24079.1| DNA-directed RNA polymerase subunit beta [Pyrococcus yayanosii CH1]
          Length = 1118

 Score =  517 bits (1331), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 382/1201 (31%), Positives = 597/1201 (49%), Gaps = 170/1201 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            S++ E GLV   ++SYN FI+ GLQ+  + FG      G  P            ++FG++
Sbjct: 20   SYWQEKGLVRQHLDSYNAFIERGLQEVVNEFG------GVKPDIPD------FEVKFGRI 67

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             + +P F   +G     ++P  AR++N+TYS+ + +++   V             G EQ 
Sbjct: 68   RVGEPEFQEAHG-QRKPLYPMDARIRNLTYSAPLYLEMIPVV------------KGIEQ- 113

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
                    E   + IG +P+M+KS +C + G      ++ G+   D GGYFII G+E+V 
Sbjct: 114  --------EPVEVRIGELPIMLKSKVCRLYGLSDEELIKLGEDPKDPGGYFIINGSERVI 165

Query: 206  VAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVD-------MSKFEDIKGGEKVLS 258
            V+ E I   R  V          + + ++ R + +          +   E  K G   +S
Sbjct: 166  VSIEDIAPNRTLV----------EKDERQERYLAKCFSYRHGYRALITVERRKDGILYVS 215

Query: 259  VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGR 318
            +  +   +    +  ALG+  DK+IV   D    D  +  +LF ++ DA +   +     
Sbjct: 216  IPNVPKPVKFVYVMRALGLEKDKDIV---DAVGNDPEVQQVLFDNLEDASDIQTQM---- 268

Query: 319  NALKYVDKLIKGTTFPPGES-------TEECMNTYLFPSLHGTKQ----KARFLGYMVKC 367
             AL+ + +L+      PG++        E  ++  L P +    +    KA +LG M   
Sbjct: 269  EALELIGRLVA-----PGQAREYRLKRAEYVIDNNLLPHMGVNPEDRIRKAYYLGMMALK 323

Query: 368  LLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARK----RMAKALQRDLYGDR 423
            +++   GRR  D++D + NKRL LAG+LL+   +V  A   K    +M K  QR   G++
Sbjct: 324  VIELSLGRRDEDDKDHYANKRLRLAGDLLKDLFRVAFAQLVKDIQYQMTKTYQRK--GEK 381

Query: 424  TV-----RPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVD 478
                   R I   +   +LT  +  + +TGAW  P  RT    G+   L R N + TL  
Sbjct: 382  YTFGNIHRFIRNSIRPDVLTERIEHSLATGAW--PGGRT----GVSQLLDRTNYMSTLSH 435

Query: 479  LRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PI 537
            LRR    +       +AR  H +HWG+IC   TP+G NCGLVKNL +   ++T++ E  +
Sbjct: 436  LRRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEKEV 495

Query: 538  FEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVE 597
             E L   G+  +  +        ++V+++G  IG  +D  + V  +++ RR  ++   + 
Sbjct: 496  REYLMKLGI--IPIEVRRPSPELWRVYLNGVLIGTIEDGKALVERIKKDRRSGKISDVIN 553

Query: 598  IKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGIIEL 650
            +   E   EV +  D GR+ RPL++VEN GK       +++++     +  L+  GIIE 
Sbjct: 554  VAYYEDIKEVYVNSDDGRVRRPLIIVEN-GKPKLTREHVEAVKQGRLKWSDLIKMGIIEY 612

Query: 651  VGTEEEEDCCTA---WGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHAR 707
            +  EEEE+   A   W +             + TH EL  + +LGL   ++P+  H+ A 
Sbjct: 613  LDAEEEENAYVAMWPWEVTE-----------EHTHLELMPAAILGLPASLVPYPEHNAAP 661

Query: 708  RVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILP 767
            R  Y +   + Q++G    N  IRVDT  H L YPQ PL  + I   +G           
Sbjct: 662  RNTYGA-GMAKQSLGLGWANFRIRVDTRGHLLHYPQVPLVNSRIMKAVGYED-------- 712

Query: 768  RPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEM--QVK 825
            RP    GQN +VA+  + GYN ED++++N+AS+ERG+ RS   R+Y+AE + K +  Q  
Sbjct: 713  RP---AGQNFVVAILAYQGYNMEDAIIINKASIERGLARSTFFRTYEAE-EKKYLGGQTD 768

Query: 826  RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA------DSGA---- 875
            R    D    G    K  R  +LD+DG  F  + +   D++IG+ +      + G     
Sbjct: 769  RFEIPDPTVRGYRGEKYYR--NLDEDGLIFPESKVDGKDVLIGRTSPPRFLEERGGLGGM 826

Query: 876  ------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGV 929
                  + S+ ++ +E+G+V KV+++   DG     V++R +R P LGDKF+S HGQKGV
Sbjct: 827  ILQERRETSVAVRPSEKGIVDKVIITETGDGTKLVKVTVRDLRIPELGDKFASRHGQKGV 886

Query: 930  LGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRY 989
            +G +  QE+ P+T  GIVPD+++NPH  PSR T GQL+EA  GK +A+L      G +  
Sbjct: 887  IGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGK-VASL-----KGRRVD 940

Query: 990  ATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKV 1049
             T F     + + ++L   GF   G E +YDG TG+ + + IFIG  +YQRL HM  DK+
Sbjct: 941  GTAFIGEPEERLRKELEELGFKHNGREVMYDGITGKRLVADIFIGVIYYQRLHHMVADKI 1000

Query: 1050 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHIC 1109
              R+ GPV  LT+QP   R R GG++FGEMERD L+ HGAA  L ERL   SD  ++ +C
Sbjct: 1001 HARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLVGHGAAMLLIERLLEESDKTEVWVC 1060

Query: 1110 RKCKNVANVIQRVVGGGRKVRGP-YCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
              C ++A   +R        RG  YC +C   + I K  + Y  KLL  EL +M I  K 
Sbjct: 1061 ENCGHIALEDKR--------RGKVYCPVCGEEERISKVEMSYAFKLLLDELKAMIIRPKL 1112

Query: 1169 D 1169
            +
Sbjct: 1113 N 1113


>gi|315230005|ref|YP_004070441.1| DNA-directed RNA polymerase subunit B [Thermococcus barophilus MP]
 gi|315183033|gb|ADT83218.1| DNA-directed RNA polymerase subunit B [Thermococcus barophilus MP]
          Length = 1118

 Score =  516 bits (1329), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 386/1190 (32%), Positives = 592/1190 (49%), Gaps = 158/1190 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            S++NE GLV   ++SYN FI +G+Q+  + FG      G  P            ++FG++
Sbjct: 20   SYWNEKGLVRQHLDSYNAFIDHGMQEVINEFG------GIKPDIPN------FEVKFGKI 67

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             L +P F    G     ++P  AR++N+TY++ + +++   V             G EQ 
Sbjct: 68   RLGEPEFQEAQG-QRKPLYPMDARIRNLTYAAPIYLEMIPVV------------NGIEQ- 113

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
                    E   + IG +P+M+KS  C + G      ++ G+   D GGYFII G+E+V 
Sbjct: 114  --------EPVEVRIGELPIMLKSKACRLYGKSEEELIKLGEDPKDPGGYFIINGSERVI 165

Query: 206  VAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVD-------MSKFEDIKGGEKVLS 258
            V+ E +   R  V          + + ++++++ +          +   E  K G   +S
Sbjct: 166  VSIEDLAPNRTLV----------EKDERQDKVVAKCFSYRHGYRALIAVERRKDGLLYVS 215

Query: 259  VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGR 318
            +  +   +    +  ALG+ SDKEIV+ I    +D  I  +LF ++ DA +     +   
Sbjct: 216  IPNVPGVVKFVYVMRALGLESDKEIVDAI---SDDPRIQQVLFDNLEDASD----IQTQE 268

Query: 319  NALKYVDKLIKGTTFPPGE----STEECMNTYLFPSLHGTK-----QKARFLGYMVKCLL 369
             AL Y+ K  K     P E      E  ++  L P + G +     +KA +LG M   +L
Sbjct: 269  EALDYIGK--KALPGQPREYRLRRAESIIDNNLLPHM-GVRPEDRIKKAYYLGMMALKVL 325

Query: 370  QAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRM----AKALQRDLYGDRTV 425
            +   G R  D++D + NKRL LAG+LL    +V      K M     K  QR   G++ V
Sbjct: 326  ELSLGLRGEDDKDHYANKRLRLAGDLLRDLFRVAFGQLVKDMQYQLTKTYQRK--GEKYV 383

Query: 426  -----RPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLR 480
                 R +   +   +LT  +  A +TGAW  P  RT    G+   L R N + TL  LR
Sbjct: 384  FENVQRFVRNSVRPDVLTERIEHALATGAW--PGGRT----GVSQLLDRTNYMSTLSHLR 437

Query: 481  RTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEP-IFE 539
            R    +       +AR  H +HWG+IC   TP+G NCGLVKNL +   ++T+I E  + +
Sbjct: 438  RVTSPLSRDQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAIPEEEVLK 497

Query: 540  QLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIK 599
             L   G+  + +         ++V+++G  IG  +D ++ V+ ++  RR  ++   + + 
Sbjct: 498  YLRKLGIVSIEERRPNP--HVWRVYLNGVLIGTVEDGIALVNRIKADRRAGKISDVINVA 555

Query: 600  RDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIELVGT 653
              +   EV I  D GR+ RPL+VVEN         ++ ++    T+  L+  G+IE +  
Sbjct: 556  YYDDVREVYINSDDGRVRRPLIVVENGVPKLTKEHVEGIKNGTLTWSDLIKMGVIEYLDA 615

Query: 654  EEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQS 713
            EEEE+   A     + K+         TH EL  + +LG+   ++P+  H+ A R  Y +
Sbjct: 616  EEEENAYVATWPWEVTKE--------HTHLELMPAAILGIPASLVPYPEHNAAPRNTYGA 667

Query: 714  QKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYN 773
               + Q++G    N  IRVDT  H L YPQ PL  + I   +G           RP    
Sbjct: 668  -GMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVG--------FEERP---A 715

Query: 774  GQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEM--QVKRRSSDD 831
            GQN +VAV  + GYN ED++V+N+AS+ERG+ RS   R+Y+AE + K +  Q  +    D
Sbjct: 716  GQNFVVAVLSYQGYNMEDAIVINKASIERGLARSTFFRTYEAE-EKKYLGGQTDKFEIPD 774

Query: 832  MVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA-------DSGA--------- 875
                G    K  R   LD+DG  F  + +   D+++G+ +        SG          
Sbjct: 775  PTVRGYRGEKYYR--HLDEDGIIFPESKVSGKDVLVGRTSPPRFLEEQSGLGGIILQERR 832

Query: 876  DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLES 935
            + SI ++ +E+G+V KV+++   DG     V++R +R P LGDKF+S HGQKGV+G +  
Sbjct: 833  ETSIAVRPSEKGVVDKVIITETGDGTKLVKVTVRDLRIPELGDKFASRHGQKGVIGLIVP 892

Query: 936  QENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFAT 995
            QE+ P+T  GIVPD+++NPH  PSR T GQL+EA  GK +A+L      G +   T F  
Sbjct: 893  QEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGK-VASL-----KGRRIDGTAFIG 946

Query: 996  PSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTG 1055
               + + ++L   GF   G E +YDG TG  + + IFIG  +YQRL HM  DK+  R+ G
Sbjct: 947  EPEEKLRKELEELGFKHSGREIMYDGITGRRLEADIFIGVIYYQRLHHMVADKMHARSRG 1006

Query: 1056 PVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNV 1115
            PV  LT+QP   R R GG++FGEMERD LI HGAA  L ERL   SD  ++ +C  C ++
Sbjct: 1007 PVQVLTKQPTEGRAREGGLRFGEMERDVLIGHGAAMLLVERLLEESDKTEVWVCETCGHL 1066

Query: 1116 ANVIQRVVGGGRKVRGP-YCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
            A   +R        RG  YC +C   + I K  + Y  KLL  EL +M I
Sbjct: 1067 ALEDKR--------RGQVYCPVCGETEKISKVEMSYAFKLLLDELKAMVI 1108


>gi|367479107|gb|AEX16088.1| RPB2 [Mucor circinelloides f. lusitanicus]
          Length = 931

 Score =  516 bits (1329), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 329/957 (34%), Positives = 506/957 (52%), Gaps = 95/957 (9%)

Query: 193  GGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKR-----NRLIVRLV 242
            GGYF+I G+EKV +AQE++    ++V      ++  +T   +S+ ++     + L ++++
Sbjct: 2    GGYFVINGSEKVLIAQERMATNTVYVFSKAPPSNFQYTAEIRSQPEKGSKNASPLFIKMM 61

Query: 243  DMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFA 302
              +      G     ++ ++ +E+PI I+F ALG  +D++++  I +   D  +L +L  
Sbjct: 62   RATSERGSSGQCIRAALPYIRSEVPIVIVFRALGQVADRDVLEHICYDRNDYEMLELLKP 121

Query: 303  SIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSLHGTK-- 355
            SI ++    D+      AL Y+ K  +GTT    +        E +   L P + GT   
Sbjct: 122  SIEESFVIQDQ----DVALDYIGK--RGTTVGATKDKRIKYASEILQKELLPHV-GTAYK 174

Query: 356  ---QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMA 412
               +K+ F GYM+  LL A   RR+ D+RD +  KR++LAG L+    ++      K +A
Sbjct: 175  TETRKSYFFGYMIHRLLLAALERRELDDRDHYGKKRMDLAGPLMASLFRLLFKKLTKDVA 234

Query: 413  KALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANP 472
            K LQ+ +   R    +   + ++ +TNGL  + +TG W    K  +  +G+   L R   
Sbjct: 235  KYLQKCIESSREFN-LTLAVKSNTITNGLKYSLATGNWGDQKKAMQSRAGVSQVLNRYTY 293

Query: 473  LQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST- 531
              TL  LRR    +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  
Sbjct: 294  TSTLSHLRRCNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMSYISVG 353

Query: 532  SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKE 591
            S   P+   L    ME L + ++ S+    KVFV+G WIG+ +D    ++ L++ RR  +
Sbjct: 354  SSATPLIMFLEEWAMENLEELSATSIADATKVFVNGVWIGIHRDPGELINSLKQMRRSVD 413

Query: 592  LPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMG---------KIKSLEGKNYTFQAL 642
            +  +V I RD  + E+R++ DAGR  RPL +VEN           +I+  E  +Y +Q +
Sbjct: 414  ISPEVSIVRDIREKELRMYTDAGRCCRPLFLVENQQLKLTRDHVLRIQDTE-DDYGWQNM 472

Query: 643  LDHGIIELVGTEEEED---CCTAWGIKYLLKDIEDKKPIK-------------------F 680
            +  GI+E V  +EEE    C T   +       E   P++                   +
Sbjct: 473  IADGIVEYVDADEEETAMICMTPEDLAESRMTAEYGAPLQETRDLFSRVKSQTGSYSHTW 532

Query: 681  THCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLF 740
            THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN   R+DTL++ L+
Sbjct: 533  THCEIHPSMILGICASIIPFPDHNQSPRNTYQS-AMGKQAMGVYLTNFQTRMDTLANILY 591

Query: 741  YPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASL 800
            YPQ+PL  T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++S+
Sbjct: 592  YPQKPLTTTRSME-----------FLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSI 640

Query: 801  ERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANL 860
            +RG+FRS   R+Y  + + K   +     +       ++ K G  + L++DG    G  +
Sbjct: 641  DRGLFRSLFFRTY-MDAEKKAGMMFMEEFEKPTRDTTLRLKHGTYEKLEEDGLIAPGTRV 699

Query: 861  QSGDIVIGKYADSGADH---------------SIKLKHTERGMVQKVVLSSNDDGKNFSV 905
               DI+IGK A   AD                S  L+ TE G+V +V+L++N DG  F  
Sbjct: 700  SGDDIIIGKTAPIPADSEELGQRTTTHNKRDASTPLRSTETGIVDQVMLTTNQDGLKFVK 759

Query: 906  VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 965
            V +R  R P +GDKF+S HGQKG +G    QE+FPF+ +GI PD++INPHA PSR T G 
Sbjct: 760  VRVRSTRVPQMGDKFASRHGQKGTIGMTYRQEDFPFSAEGITPDLIINPHAIPSRMTIGH 819

Query: 966  LLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGE 1025
            ++E  LGK ++ L     +G +  ATPF   +V+AI++ L   G+   G E +Y+G TG 
Sbjct: 820  MIECLLGK-VSTL-----TGNEGDATPFTDVTVEAISQALQAQGYQSRGFEVMYNGFTGR 873

Query: 1026 MVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1082
             +   +F+GPT+YQRL HM +DK+  R  GPV  LTRQPV  R R GG++FGEMERD
Sbjct: 874  KLNVQVFLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERD 930


>gi|344229872|gb|EGV61757.1| beta and beta-prime subunits of DNA dependent RNA-polymerase [Candida
            tenuis ATCC 10573]
          Length = 1165

 Score =  516 bits (1329), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 376/1194 (31%), Positives = 579/1194 (48%), Gaps = 147/1194 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++S+N F+   L+K   +    +V    DP    E   +Y  +R G  
Sbjct: 50   AFLKVKGLVKQHLDSFNYFVDTDLKKIIKA--NELVLSDVDP----EFYLKYLDIRVGC- 102

Query: 92   TLDKPSFFAGNG-GDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
               K S     G   E ++ P   RL+++TYS+ + V V+   YT+          GR+ 
Sbjct: 103  ---KSSTSTAKGLSKEVNLVPHDCRLRDLTYSAPIYVDVE---YTR----------GRKI 146

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKV 204
             + ++        + IGR+P+M++S+ C + G++        +C  D GGYFI+ G EKV
Sbjct: 147  IVHRD--------LEIGRMPIMLRSNKCLLDGIDDKKMAKYDECPLDPGGYFIVNGTEKV 198

Query: 205  FVAQEQICLKRLWVS--NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKV-LSVYF 261
             + QEQ+   R+ V      G   A  + +   R        SK   I   +K+ L    
Sbjct: 199  ILVQEQLSKNRIIVEADEKKGIVQASVTSSTHER-------KSKTYVITKNDKIYLKHNS 251

Query: 262  LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNAL 321
            +S ++PI I+  A G++SD EI+ L+   C +      LFA   +   K + F + + AL
Sbjct: 252  ISEDVPIVIILKAAGITSDLEILQLV---CGNDPNYQDLFAINFEEAAKLEIFTQ-QQAL 307

Query: 322  KYVDKLIKG---------TTFPPG-ESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQA 371
             YV K +K          +    G E+    +  ++  S    ++KA ++  M + +L  
Sbjct: 308  HYVGKRVKTIRRAGAPKLSQLQEGIEAIATTIIAHITVSDLQFREKALYIAMMTRRVLMT 367

Query: 372  YSGRRKCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKRMAKALQRDLY 420
                +  D+RD   NKRLELAG+L+             + K +I    K+ ++A + D  
Sbjct: 368  MENPKMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNSDFKANIDKILKKPSRASEFDAL 427

Query: 421  GDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLR 480
                   +   + ++ +T G++RA STG WS    + ER +G+   L R + +  L  + 
Sbjct: 428  -------LSINIHSNNITMGMNRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALGMMT 479

Query: 481  RTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLVSTSILEPIFE 539
            R   Q + + KV   R   PS +G +C   TP+GE CGLVKNL + T + +    EPI  
Sbjct: 480  RISSQFEKSRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEEPIKR 539

Query: 540  QLFNSGMEKL--ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVE 597
              F  G E +   D AS    G + ++++G  IG  +    FV + R  RR  ++   + 
Sbjct: 540  LCFILGCEDILEVDSASLHAKGNYGIYLNGTLIGTTRFPAKFVGDFRNLRRTGKISAFIS 599

Query: 598  IKRDELQSEVRIFMDAGRILRPLLVVE--NMGKIKS-----LEGKNYTFQALLDHGIIEL 650
            I  +  QS V I  D GRI RPL++V+  N+ K+K+     L+   + F   L HG++E 
Sbjct: 600  IYTNSHQSAVHIATDGGRICRPLIIVDKNNVSKVKAKHLLKLQRDEWAFDDFLKHGLVEY 659

Query: 651  VGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVL 710
            +   EE D   A       +D+ D      TH E++   +LG   G+IP+ +H+ + R  
Sbjct: 660  LDVNEENDSLIAI----YERDLSDSTKSNITHLEVEPFTVLGAVAGLIPYPHHNQSPRNT 715

Query: 711  YQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPE 770
            YQ      QAIG    N   R+DTL + + YPQ+P+ +T   +           ++   +
Sbjct: 716  YQCA-MGKQAIGAIGYNQFRRIDTLLYLMVYPQQPMVKTKTIE-----------LIDYDK 763

Query: 771  LYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSD 830
            L  GQNA VAV  + GY+ ED+LV+N+AS++RG  R + +R     +       K   S 
Sbjct: 764  LPAGQNATVAVMSYSGYDIEDALVLNKASVDRGFGRCQVLRKNTITLKRYPNHTKDILSG 823

Query: 831  DMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSI----------- 879
              V+  +    I    SL  DG   +G  L++G + + K   + A  ++           
Sbjct: 824  MRVD--ENNEPIPPHSSLGPDGLGEVGMKLENGQVYVNKCVPTNAGETVLNGPGANEQPA 881

Query: 880  --------KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLG 931
                      K  E   V +V++S +D+ +    V LRQ R P LGDKFSS HGQKGV G
Sbjct: 882  ESHRETPAYYKGPEPSYVDQVMMSVSDNDQALIKVLLRQTRRPELGDKFSSRHGQKGVCG 941

Query: 932  FLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYAT 991
             +  QE+ PF   GI PDI++NPH FPSR T G+++E   GK       G+ +G   Y T
Sbjct: 942  IIVQQEDLPFNDDGISPDIIMNPHGFPSRMTVGKMIELISGKA------GVLNGTLEYGT 995

Query: 992  PFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKF 1051
             F    +  ++E L + GF+  G + LY G TGE +++ IF GP +YQ+L HM  DK+  
Sbjct: 996  CFGGSDLQDMSEILVQNGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHA 1055

Query: 1052 RNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRK 1111
            R  GP   LTRQP   R R GG++ GEMERDC+IA+GA+  L ERL   SD++++ +C K
Sbjct: 1056 RARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMLSSDAFEVDVCNK 1115

Query: 1112 CKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
            C             G      +C  C+S + ++K  +PY AKLL QEL SM I 
Sbjct: 1116 C-------------GLMGHNNWCTSCNSSEHVIKMTIPYAAKLLFQELISMNIA 1156


>gi|68131842|gb|AAY85199.1| RNA polymerase II second largest subunit [Cissus tuberosa]
          Length = 951

 Score =  516 bits (1329), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 340/994 (34%), Positives = 526/994 (52%), Gaps = 108/994 (10%)

Query: 109  MFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGR 168
            +FP+ ARL+N+TYS+ + V V       KR+     + G +  +++   + E T + IG+
Sbjct: 5    LFPKAARLRNLTYSAPLYVNVT------KRI----IRKGHD--LEEVTETQEFTKVFIGK 52

Query: 169  IPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV---- 218
            +P+M++S  C +         E G+C +D GGYFII G+EKV +AQE++    ++V    
Sbjct: 53   VPIMLRSSYCTVYHNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSDNHVYVFKKR 112

Query: 219  -SNSMGWTVAYKS-ENKRNR----LIVRLVDMSKFEDIKGGEKV-LSVYFLSTEIPIWIL 271
              N   +    +S    +NR    + V+++  +  +    G+ +  ++ ++ TEIPI I+
Sbjct: 113  QPNKYAYVAEVRSMAESQNRPPSSMFVQMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIV 172

Query: 272  FFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGT 331
            F ALG  +DK+I   ++ TC D S   ++    H +  +    +  + AL Y+ K  +G+
Sbjct: 173  FRALGFVADKDI---LEHTCYDFSGTQMMELP-HPSLEEAFVIQNQQVALDYIGK--RGS 226

Query: 332  TFPPGESTE-------ECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRRKCDN 380
            T   G + E       E     + P +    +   +KA + GY++  LL    GRR  D+
Sbjct: 227  TV--GVTREKRIKYAKEIFQKEMLPHVGVGEYCETKKAYYFGYIIHQLLLCAFGRRPEDD 284

Query: 381  RDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNG 440
            RD + NKRL+LAG LL    ++      + +   +Q+ +   + V  +++ + A  +T+G
Sbjct: 285  RDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN-LQFAIKAKTITSG 343

Query: 441  LSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHP 500
            L  + +TG W        R +G+   L R     TL  LRR    +   GK+   R  H 
Sbjct: 344  LKYSLATGNWGQANAAGTR-AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHN 402

Query: 501  SHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGG 559
            SHWG +C   TP+G+ CGLVKNL +   ++  S   PI E L     E   + +   +  
Sbjct: 403  SHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQ 462

Query: 560  KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRP 619
              K+FV+G W+G+ ++    V  LR+ RR+ ++ T+V + RD    E+R++ D GR  RP
Sbjct: 463  STKIFVNGCWVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRP 522

Query: 620  LLVVENM------GKIKSLEGKNYT----FQALLDHGIIELVGTEEEEDCCTAWGIKYLL 669
            L +VE          I++L+ +       +  L+  G IE V TEEEE    +  I  L+
Sbjct: 523  LFIVEKQRLLIKKKDIRALQLRESPEDGGWHDLVSKGFIEYVDTEEEETTMISMTINDLV 582

Query: 670  K---DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTT 726
                + E+     +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   T
Sbjct: 583  SARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM-GKQAMGIYVT 641

Query: 727  NPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLG 786
            N  +R+DTL++ L+YPQ+PL  T   + L      H   LP      G NAIVA+  + G
Sbjct: 642  NYQLRMDTLAYVLYYPQKPLVTTRAMEHL------HFRQLP-----AGINAIVAIACYSG 690

Query: 787  YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK------IQS 840
            YNQEDS++MN++S++RG FRS   RSY+ E       VK        +FG+      +  
Sbjct: 691  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE-------DFGRPNRENTMGM 743

Query: 841  KIGRVDSLDDDGFPFIGANLQSGDIVIGKYA-----DSGA--------DHSIKLKHTERG 887
            + G  D LDDDG    G  +   D++IGK       DS          DHS  L+H+E G
Sbjct: 744  RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDSQGQPSRYTRRDHSTSLRHSESG 803

Query: 888  MVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIV 947
            MV +V+L++N DG  F  V +R VR P +GDKFSS HGQKG +G   +QE+ P+T++GI 
Sbjct: 804  MVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 863

Query: 948  PDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHR 1007
            PDI++NPHA PSR T GQL+E  +GK  A +GK      +  ATPF   +VD I++ LH+
Sbjct: 864  PDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK------EGDATPFTDVTVDNISKALHK 917

Query: 1008 AGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRL 1041
             G+   G E +Y+G TG  + ++IF+GPT+YQRL
Sbjct: 918  CGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 951


>gi|18312085|ref|NP_558752.1| DNA-directed RNA polymerase subunit B [Pyrobaculum aerophilum str.
            IM2]
 gi|18159514|gb|AAL62934.1| DNA-directed RNA polymerase subunit B (rpoB) [Pyrobaculum aerophilum
            str. IM2]
          Length = 1127

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 383/1183 (32%), Positives = 583/1183 (49%), Gaps = 138/1183 (11%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
            F  + GL +HQI S+N+F+   L K  + F            K  E E +   +   ++ 
Sbjct: 31   FIKDKGLANHQIKSFNDFLDKKLPKIVEDF------------KVVETEIKGLKLVLEKIE 78

Query: 93   LDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYI 152
            +  P     +G  E  ++P  ARL+N TYS+ + +                       Y+
Sbjct: 79   VGWPRIKESDGS-ESLIYPMEARLRNATYSAPLYLTATL-------------------YV 118

Query: 153  QKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDC------DFDHGGYFIIKGAEKVFV 206
              E  + ET    IG +P+MVKS  C +  +   +         D GGYFII G+E+V +
Sbjct: 119  DDEPYATET--FYIGELPIMVKSKRCNLTRLRPSEYAKRFEDPQDFGGYFIINGSERVII 176

Query: 207  AQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEI 266
            +QE +   R         +V + ++     +  R       E  K G    ++  +  +I
Sbjct: 177  SQEDLVADRPIYDKGDKPSVRFLAKTISTGIGYR--STLTVELNKDGVIYATLSAMPVKI 234

Query: 267  PIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVD- 325
            P  I   ALG+ +D+++V  +    +D  I   L  S+  A N+    R+  +AL Y+  
Sbjct: 235  PFPIYMKALGLETDEDVVKAV---SDDPEIQKELLPSLIAA-NQIAITRE--DALDYIGG 288

Query: 326  KLIKGTTFPPG-ESTEECMNTYLFPSLHGT-----KQ------KARFLGYMVKCLLQAYS 373
            K+  G   P   E   + ++ Y  P L  T     KQ      KA  LG +VK L++ + 
Sbjct: 289  KVAVGQPRPVRIERALQLLDRYFLPHLGTTVPDEKKQQEIRLKKALMLGQIVKGLVELHL 348

Query: 374  GRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLD 433
            GRRK D++D   NKR+ L G+L+ +  +  +    + +   L++  Y    +  I+  + 
Sbjct: 349  GRRKPDDKDHVGNKRVRLVGDLMTQLFRTVLKQFLQELKSQLEK-YYARGRIPHIQTIVR 407

Query: 434  ASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVG 493
              I+T  + +A +TG W          +G+   L R N L TL  LRR    +  T    
Sbjct: 408  PDIITERVRQALATGNW------VGGKTGVSQILDRTNYLSTLSYLRRVVSSLSRTQPHF 461

Query: 494  DARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQ-LFNSGMEKLADD 552
            +AR  HP+ WG++C + TP+G+N GLVKNL +   ++T + E   E  L+N G+  +   
Sbjct: 462  EARDLHPTQWGRLCAVETPEGQNVGLVKNLALLAEITTGVDEGEVEHMLYNMGVIPILKA 521

Query: 553  ASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMD 612
                + G  +V+++G  IGV  +       +R  RR+ ++  ++ I    +   V +  D
Sbjct: 522  REEGVSGA-EVYLNGRLIGVHPNPEELAKTVRGLRRQGKISDEINIAV--INGTVYVNCD 578

Query: 613  AGRILRPLLVVENMGKIK-------SLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGI 665
             GRI RPLLVVEN GK+K        ++  + T+  L+  G++E +  +EEE+   A   
Sbjct: 579  GGRIRRPLLVVEN-GKLKLTREIVEKVKRGDLTWDDLVKMGVVEYLDADEEENAHIATDP 637

Query: 666  KYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPT 725
            +  L +        +TH E+  S +LG    IIP+  H+ + R  Y++   + Q++G P 
Sbjct: 638  RGNLTN--------YTHVEIIPSSILGAIASIIPYIEHNQSPRNQYEA-AMAKQSLGLPQ 688

Query: 726  TNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHL 785
            +N   ++D+  H L+YP+RP+  T   + +G   Y       RP    GQNA+VA+  + 
Sbjct: 689  SNFLYKLDSRGHMLYYPERPIVTTRGLELIG---YSK-----RPA---GQNAVVALLTYT 737

Query: 786  GYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGR- 844
            GYN ED++++N+AS+ERGMFRS   R+Y+ E      Q      +D +       K  R 
Sbjct: 738  GYNIEDAVILNKASVERGMFRSVFYRTYETE-----EQKYPGGEEDRIEIPDSSVKGYRG 792

Query: 845  ---VDSLDDDGFPFIGANLQSGDIVIGK------YADSGA--------DHSIKLKHTERG 887
                  LD+DG       + S +++IGK      Y    A        D S+ ++  E+G
Sbjct: 793  PEAYSHLDEDGIAPPEVYVSSNEVLIGKTSPPRFYTTLEAERILKERRDASVAVRRGEKG 852

Query: 888  MVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIV 947
            +V KV+++ + +G     V LR++R P LGDKF+S HGQKGV+G L  QE+ PFT  GIV
Sbjct: 853  IVDKVIITESPEGNKLVKVRLRELRVPELGDKFASRHGQKGVVGMLLRQEDMPFTEDGIV 912

Query: 948  PDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHR 1007
            PDI++NPHA PSR T  QLLE+  GK  A+ G+ I       ATPF     + + + L +
Sbjct: 913  PDIIVNPHALPSRMTVAQLLESIAGKLGASTGQLID------ATPFEGVKEEDLRKLLLK 966

Query: 1008 AGFSKW-GTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVA 1066
             G+ KW G E +Y G TGE + + IFIG  +YQ+L HM  DK+  R  GPV  LTRQP  
Sbjct: 967  LGY-KWDGKEVMYSGITGERLVADIFIGIVYYQKLHHMVADKIHARARGPVQILTRQPTE 1025

Query: 1067 DRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGG 1126
             R R GG++ GEMERD LIAHGA+A LHERL   SD Y M++C  C   A +        
Sbjct: 1026 GRSREGGLRLGEMERDVLIAHGASALLHERLVESSDKYVMYVCELCGLPAYL-------D 1078

Query: 1127 RKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFD 1169
             K   P C I        K  VPY  KLL QEL ++GI  K +
Sbjct: 1079 AKSNKPKCPIHGDTGQFAKVVVPYAFKLLLQELIALGIYPKLE 1121


>gi|389860840|ref|YP_006363080.1| DNA-directed RNA polymerase subunit B' [Thermogladius cellulolyticus
            1633]
 gi|388525744|gb|AFK50942.1| DNA-directed RNA polymerase subunit B' [Thermogladius cellulolyticus
            1633]
          Length = 1151

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 390/1227 (31%), Positives = 593/1227 (48%), Gaps = 183/1227 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +FF E GLV   ++SYN F++  L +    + E  +                  +     
Sbjct: 16   AFFEEKGLVRQHLDSYNRFVRELLPEIMREYREIPITADL-------------KLVIKDY 62

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             + KP  +    G E ++ P   RL+N+TY++ +  KV            D+  + +EQ 
Sbjct: 63   KIGKP-VWKNIEGVESEVTPMECRLRNLTYAAPVTAKVAL---------VDREGSHKEQD 112

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVF 205
            I+   L D         +PVM+KS+L  +  + K      G+   D GGYFII GAEKV 
Sbjct: 113  IK---LMD---------LPVMLKSELDPLSKLSKEELKQVGEDPDDPGGYFIINGAEKVL 160

Query: 206  VAQEQICLKRLWV-------SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLS 258
            +AQE +    + V       S +    V   ++ +R++L++        E  K G  V  
Sbjct: 161  IAQEDLASNNIIVDISPEGSSTTHVAKVVSTAKGRRSQLVI--------ERRKDG--VFY 210

Query: 259  VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD--EFRK 316
              F   +IP  IL  ALG++++ E++N + F   D  +   L  SI +  +     E   
Sbjct: 211  ANFQGRKIPAPILMIALGLATEYELMNAVSF---DPDVQIQLLPSISEVQSVLPRLEIPP 267

Query: 317  GRNAL-----------KYVDKLIK--GTTFPPGESTEEC-------MNTYLFPSLHGTK- 355
            G +             K V++ +   G     G   EE        ++ YL P + GT  
Sbjct: 268  GVSEEEIRRLEEEYRKKVVEEALDFIGARMAVGRPREERVRRAERALDEYLLPHI-GTDP 326

Query: 356  ------QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARK 409
                  +KA F+G M+  +++ Y GRR+ D++D +RNKRL+LAG+LL   L+  I  +  
Sbjct: 327  SPSTRLKKALFIGQMINKIIEVYLGRRQPDDKDHYRNKRLKLAGDLLATLLRHAIVVSFI 386

Query: 410  RMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGR 469
            R  K      Y       ++  +  +I+T+ +S A +TG W  P  RT    G+   L R
Sbjct: 387  REVKTSIEKTYSKYRKVDLKMVIKPNIITDRISHAMATGNW--PGGRT----GVSQILDR 440

Query: 470  ANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLV 529
             N L TL  LRR    +       +AR  H + WG++C   TP+G N GLVKNL +   +
Sbjct: 441  TNMLSTLSHLRRVVSPLARAQPHFEARELHFTSWGRMCPFETPEGANIGLVKNLALMAHI 500

Query: 530  STSILEPIFEQ------------LFNSGMEKLADDASYSLGGKF----KVFVDGDWIGVC 573
            S    E   EQ            + +   E +    +YS   ++    KV+++G  IG+ 
Sbjct: 501  SVGFDEKEVEQTLVKLGVKTLPQILDELKESIKRGEAYSGTAEYSSWSKVYLNGRLIGLY 560

Query: 574  KDSLSFVSELRRKRRRKELPTQVEIK--RDELQSEVRIFMDAGRILRPLLVVEN------ 625
             D      ++R  RR+ ++ ++V +   R E  +EV +  DAGRI RPLLVVEN      
Sbjct: 561  PDGGELARKIRELRRQGKISSEVNVAYFRTEYLNEVYVNCDAGRIRRPLLVVENGELKLK 620

Query: 626  MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCEL 685
               IK L+  N  F+ L+  G+IE +  +EEE+   A           D+  I+ TH E+
Sbjct: 621  PEHIKQLKNGNLKFEDLVKRGVIEYLDPDEEENAYIALN--------PDELSIEHTHLEI 672

Query: 686  DMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRP 745
             +  +LG+   IIP+  H+ + R +Y++     Q++G    N   R+D+  H L YPQ+P
Sbjct: 673  WVPSILGIVASIIPYPEHNQSPRNIYEAA-MGKQSLGLYAANFQRRMDSRGHFLHYPQKP 731

Query: 746  LFRTMISDCLG---KPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLER 802
            L +T   + +G   KP               GQN +VAV  + GYN ED+++MN++S+ER
Sbjct: 732  LAQTKPLEVIGYNEKPA--------------GQNMVVAVLTYTGYNIEDAVIMNKSSIER 777

Query: 803  GMFRSEHIRSYKAEVDNKEMQVKRRSSDDM-VNFGKIQSKIG--RVDSLDDDGFPFIGAN 859
            G+ RS   R Y       E +      D + V    I+   G    + LD+DG       
Sbjct: 778  GLGRSTFFRVY----STVEYKYPGGQEDKISVPPSDIRGYKGPRAYEKLDEDGIVAPETY 833

Query: 860  LQSGDIVIGKYADS--------------GADHSIKLKHTERGMVQKVVLSSNDDGKNFSV 905
            +  GD++IGK + S                D S+ ++H E+G+V  V+++++ DG     
Sbjct: 834  VVGGDVLIGKVSPSRFMITQELTGSEQVKQDTSVVMRHEEKGIVDVVMITTDSDGNKLVK 893

Query: 906  VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 965
            V +R +R P LGDKF+S HGQKGV+G +  Q + PFT  GI PD++INPHAFPSR T GQ
Sbjct: 894  VRVRDLRIPELGDKFASRHGQKGVVGLIIPQYDMPFTEDGITPDLIINPHAFPSRMTVGQ 953

Query: 966  LLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGE 1025
            L+E+  GK +AAL   +  G     TPF     + +   L R G+ + G E +YDGRTGE
Sbjct: 954  LIESIAGK-VAALEGRLVDG-----TPFFKEDPEKLMVVLKRHGYPETGEEAMYDGRTGE 1007

Query: 1026 MVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLI 1085
            ++R+ +FIG  +YQ+L HM  DK+  R  GPV  LTRQP   R R GG+++GEME DCL+
Sbjct: 1008 LMRAPVFIGIVYYQKLHHMVSDKIHARARGPVQILTRQPTEGRARAGGLRWGEMEVDCLV 1067

Query: 1086 AHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPY-CRICDSGDDIV 1144
             HGAA+ L E +   SD   +++C  C +        +G   ++R  Y C +      + 
Sbjct: 1068 GHGAASLLKETMIDRSDKAVIYVCELCGH--------IGYYDRIRDRYVCPVHKEKGVLK 1119

Query: 1145 KANVPYGAKLLCQELFSMGITLKFDTE 1171
               V Y  KLL QEL SM I  +   E
Sbjct: 1120 PVEVSYSFKLLIQELMSMAIMPRLKLE 1146


>gi|374327622|ref|YP_005085822.1| DNA-directed RNA polymerase subunit beta [Pyrobaculum sp. 1860]
 gi|356642891|gb|AET33570.1| DNA-directed RNA polymerase subunit beta [Pyrobaculum sp. 1860]
          Length = 1127

 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 380/1183 (32%), Positives = 581/1183 (49%), Gaps = 138/1183 (11%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
            F  + GL SHQI S+N+F+   L +  + F            K  E E +   +   ++ 
Sbjct: 31   FIKDKGLASHQIKSFNDFLDKKLPRIVEDF------------KVVETEIKGLKLVLERIE 78

Query: 93   LDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYI 152
            +  P     +G  E  ++P  ARL+N TYS+ + +                       Y+
Sbjct: 79   VGWPRIKESDGS-ESLIYPMEARLRNATYSAPLYLTATL-------------------YV 118

Query: 153  QKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDC------DFDHGGYFIIKGAEKVFV 206
              E  + ET    IG +P+MVKS  C +  +  G+         D GGYFII G+E+V +
Sbjct: 119  DDEPYATET--FYIGELPIMVKSKRCNLTRLRTGEYAKRFEDPQDFGGYFIINGSERVII 176

Query: 207  AQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEI 266
            +QE +   R         +V Y ++     +  R     +F   + G    ++  +  +I
Sbjct: 177  SQEDLVADRPIYDKGDKPSVRYLAKTISTGIGYRSTLTVEFS--RDGVIYATLSAMPVKI 234

Query: 267  PIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVD- 325
            P  I   ALG+ +D+E+V  +    +D  I   L  S+  A N+    R+  +AL ++  
Sbjct: 235  PFPIYMKALGLETDEEVVKAV---SDDPEIQKELLPSLIAA-NQIAITRE--DALDFIGG 288

Query: 326  KLIKGTTFPPG-ESTEECMNTYLFPSLHGTK-----------QKARFLGYMVKCLLQAYS 373
            K+  G   P   E   + ++ Y  P L  T            +KA  LG +VK L++ + 
Sbjct: 289  KVAVGQPRPVRVERALQLLDRYFLPHLGTTVADEKRQQEIRLKKALMLGQIVKGLVELHL 348

Query: 374  GRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLD 433
            GRRK D++D   NKR+ L G+L+ +  +       + +   L++  Y    +  I+  + 
Sbjct: 349  GRRKPDDKDHVANKRVRLVGDLMTQLFRTVFKQFLQELKSQLEK-YYARGRIPHIQTVVR 407

Query: 434  ASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVG 493
              I+T  + +A +TG W          +G+   L R N L TL  LRR    +  T    
Sbjct: 408  PDIITERVRQALATGNW------VGGKTGVSQILDRTNYLSTLSYLRRVVSSLSRTQPHF 461

Query: 494  DARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQ-LFNSGMEKLADD 552
            +AR  HP+ WG++C + TP+G+N GLVKNL +   ++T + E   EQ L+  G+  +   
Sbjct: 462  EARDLHPTQWGRLCAVETPEGQNVGLVKNLALLAEITTGVDEGEVEQMLYGMGVVPILKA 521

Query: 553  ASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMD 612
                + G  +V+++G  IGV  +     + +R  RR+ ++  ++ I    L   V +  D
Sbjct: 522  RDEGVAGA-EVYLNGRLIGVHPNPDELAAAVRGLRRQGKISDEINIAV--LNGVVYVNSD 578

Query: 613  AGRILRPLLVVENMGKIK-------SLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGI 665
             GRI RPLLVVE+ GK+K        ++  + T+  L+  G++E +  +EEE+   A   
Sbjct: 579  GGRIRRPLLVVED-GKLKLTKEVVERVKRGDLTWDDLVKTGVVEYLDADEEENAHIATDP 637

Query: 666  KYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPT 725
               L +        +TH E+  S +LG    IIP+  H+ + R  Y++   + Q++G P 
Sbjct: 638  HVDLSN--------YTHVEIIPSSILGAVASIIPYLEHNQSPRNQYEA-AMAKQSLGLPQ 688

Query: 726  TNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHL 785
            +N   ++D+  H L+YP+RP+  T   + +G   Y       RP    GQNA+VA+  + 
Sbjct: 689  SNLLYKLDSRGHMLYYPERPIVTTRGLELIG---YSK-----RP---AGQNAVVALLTYT 737

Query: 786  GYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGR- 844
            GYN ED++++N+AS+ERGMFRS   R+Y+ E      Q      +D +       K  R 
Sbjct: 738  GYNIEDAVILNKASVERGMFRSVFYRTYETE-----EQKYPGGEEDRIEIPDSSVKGYRG 792

Query: 845  ---VDSLDDDGFPFIGANLQSGDIVIGK------YADSGA--------DHSIKLKHTERG 887
                  LD+DG       + S +++IGK      Y    A        D S+ ++  ERG
Sbjct: 793  PEAYSHLDEDGIAPPEVYVSSNEVLIGKTSPPRFYTTLEAERILKERRDASVAVRRGERG 852

Query: 888  MVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIV 947
            +V +V+++ + +G     V LR++R P LGDKF+S HGQKGVLG L   E+ PFT  GIV
Sbjct: 853  IVDRVIVTESPEGNKLVKVRLRELRIPELGDKFASRHGQKGVLGMLLRHEDMPFTEDGIV 912

Query: 948  PDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHR 1007
            PDI++NPHA PSR T  QLLE+  GK  A+ G  +       ATPF     + + + L +
Sbjct: 913  PDIIVNPHALPSRMTVAQLLESMAGKVGASTGHLVD------ATPFEGVKEEDLRKLLLK 966

Query: 1008 AGFSKW-GTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVA 1066
             G+ KW G E +Y G TGE + + IFIG  +YQ+L HM  DK+  R  GPV  LTRQP  
Sbjct: 967  LGY-KWDGKEVMYSGITGERLVADIFIGVVYYQKLHHMVADKIHARARGPVQILTRQPTE 1025

Query: 1067 DRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGG 1126
             R R GG++ GEMERD LIAHGA+A L+ERL   SD Y M++C  C   A +        
Sbjct: 1026 GRAREGGLRLGEMERDVLIAHGASALLYERLVESSDKYVMYVCELCGLPAYL-------D 1078

Query: 1127 RKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFD 1169
             K   P C I        K  VPY  KLL QEL ++GI  K +
Sbjct: 1079 AKSNKPRCPIHGDAGQFAKVVVPYAFKLLLQELIALGIYPKIE 1121


>gi|374633176|ref|ZP_09705543.1| DNA-directed RNA polymerase subunit B [Metallosphaera yellowstonensis
            MK1]
 gi|373524660|gb|EHP69537.1| DNA-directed RNA polymerase subunit B [Metallosphaera yellowstonensis
            MK1]
          Length = 1124

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 386/1207 (31%), Positives = 580/1207 (48%), Gaps = 180/1207 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVE-PGYDPSKKGEGEWRYASMRFGQ 90
            ++F   GLV   ++S+N+F++N LQ+  D  GE   E PG               ++ G+
Sbjct: 13   AYFKSRGLVRQHLDSFNDFVRNKLQEIIDEQGEITTEIPGL-------------KIKLGK 59

Query: 91   VTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
            + + KP     + GD  ++ P  ARL+N+TYS+ + +       T   + ++        
Sbjct: 60   IRVGKPRVREADKGD-REITPMEARLRNLTYSAPIYL-------TMIPIENN-------- 103

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKS------DLCWMKGVEKGDCDFDHGGYFIIKGAEKV 204
                  +  E   + IG IP+M+KS      +L   K VE G+   D GGYFII G+E+V
Sbjct: 104  ------IEGEPIEVHIGDIPIMLKSSADPTSELSPEKLVEIGEDPKDPGGYFIINGSERV 157

Query: 205  FVAQEQICLKRLWVS-----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
             V QE +   R+ V      +++  T    S     R+ + +      E +K     +S 
Sbjct: 158  IVTQEDLATNRVLVDVGKSGSNITHTAKIISSTAGYRVPITI------ERLKDSTIHVSF 211

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
              +   IP  IL  ALG+S+D+++   +     D  I N L  SI  A +   +     +
Sbjct: 212  PAMPGRIPFVILMRALGISTDRDVTYAVSL---DPEIQNELLPSIEQASSIATK----ED 264

Query: 320  ALKYVDKLIKGTTFPPGES-------TEECMNTYLFPSLHGTKQ----KARFLGYMVKCL 368
            AL ++     G     G+         E+ ++ Y  P L  +      KA +L + V  L
Sbjct: 265  ALDFI-----GNRVAIGQKREMRIQKAEQILDKYFLPHLGTSPSDRMAKAYYLAFAVSKL 319

Query: 369  LQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQ------RDLYGD 422
            ++ Y GRR+ D++D + NKRL+LAG+L     +V      K +   L+      R L  +
Sbjct: 320  IELYLGRREPDDKDHYANKRLKLAGDLFASLFRVAFKAFVKDLVYQLEKSKVRGRRLALN 379

Query: 423  RTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
              VRP        I++  +  A +TG W     RT    G+   L R N L  L  LRR 
Sbjct: 380  ALVRP-------DIISERIRHALATGNWVG--GRT----GVSQLLDRTNWLSMLSHLRRV 426

Query: 483  RQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQ-L 541
               +       +AR  H + WG++C   TP+G N GLVKN+ +   +S  I E   E+ L
Sbjct: 427  VSSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNIALLAQISVGINERNVEKTL 486

Query: 542  FNSGM----------EKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKE 591
            +N G+          E   D + Y   G  +V ++G  +G   D      ++R +RR  E
Sbjct: 487  YNLGVTPVDEIIRKVEAGEDVSEYQ--GWSRVILNGKLVGYYPDGEELAQKIRDRRREGE 544

Query: 592  LPTQVEIKRDELQS--EVRIFMDAGRIL---------RPLLVVENMGKIKSLEGKNYTFQ 640
            L  +V +     +S  EV I  D GR+          +PL+  E+   I++L+    TF 
Sbjct: 545  LSDEVNVSHMVTESFDEVYINCDGGRVRRPLVVVRNGKPLVAKED---IENLKKGKITFD 601

Query: 641  ALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPF 700
             L+  G IE +  EEEE+   A   K + KD         TH E+    +LG++  IIP+
Sbjct: 602  TLVREGKIEFLDAEEEENALIAMEPKDVTKD--------HTHLEIWAPAVLGITASIIPY 653

Query: 701  ANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGY 760
              H+ + R  YQS   + QA+G    N  IR DT +H L YPQ+P+ +T   + +G    
Sbjct: 654  PEHNQSPRNTYQS-AMAKQALGLYAANYQIRTDTRAHLLHYPQKPIVQTRALEAIG---- 708

Query: 761  GHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAE---- 816
                   RP    G NAI A+  + GYN ED+++MN++S++RGMFRS   R Y AE    
Sbjct: 709  ----YTERPA---GNNAIFALMSYTGYNMEDAVIMNKSSVDRGMFRSTFFRLYSAEEIKY 761

Query: 817  VDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA----- 871
               +E Q+    +      GK   ++     L+ +G       ++ GD++IGK +     
Sbjct: 762  PGGQEDQILLPEAGVRGYKGKEYYRL-----LESNGIVSPEVEVKGGDVLIGKVSPPRFL 816

Query: 872  ---------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSS 922
                      S  D SI  +H ERG V  V+++   DG     V +R +R P +GDKF++
Sbjct: 817  QEFKELSPDQSKRDTSIITRHGERGTVDLVLVTETSDGNKLVKVRVRDLRIPEIGDKFAT 876

Query: 923  MHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGI 982
             HGQKGV+G L  Q + P+T++G+VPDI++NPHA PSR T GQ++EA  GK +AA G  I
Sbjct: 877  RHGQKGVIGMLIPQVDMPYTVRGLVPDIILNPHALPSRMTVGQIMEAIAGKYVAASGHPI 936

Query: 983  CSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLI 1042
                   ATPF    ++ I ++L   G+   GTE +YDGRTGE ++S I  G  +YQ+L 
Sbjct: 937  D------ATPFYNLPIEEIQKKLSELGYLSDGTEVVYDGRTGEKIKSRILFGIVYYQKLH 990

Query: 1043 HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSD 1102
            HM  DK+  R  GPV  LTRQP   R R GG++FGEMERDCLI +GAA  + +RL   SD
Sbjct: 991  HMVADKMHGRGRGPVQILTRQPTEGRAREGGLRFGEMERDCLIGYGAAMLIKDRLLDNSD 1050

Query: 1103 SYQMHICRKCKNVANVIQRVVGGGRKVRGPY-CRICDSGDDIVKANVPYGAKLLCQELFS 1161
               +++C +C          VG   + +  Y C I      +    + Y  KLL QEL S
Sbjct: 1051 RAVVYVCDQCG--------YVGWYDRAKNKYVCPIHGDKTTLSPVTISYAFKLLLQELMS 1102

Query: 1162 MGITLKF 1168
            M I  + 
Sbjct: 1103 MVIAPRL 1109


>gi|126460694|ref|YP_001056972.1| DNA-directed RNA polymerase subunit B [Pyrobaculum calidifontis JCM
            11548]
 gi|126250415|gb|ABO09506.1| DNA-directed RNA polymerase, subunit B' / DNA-directed RNA
            polymerase, subunit B' [Pyrobaculum calidifontis JCM
            11548]
          Length = 1127

 Score =  514 bits (1324), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 377/1193 (31%), Positives = 585/1193 (49%), Gaps = 158/1193 (13%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
            F  + GL +HQI S+N+F+   L +  + F            K  E E +   +   ++ 
Sbjct: 31   FIKDKGLANHQIKSFNDFLDKRLPRIVEEF------------KVVETEIKGLKLVLEKIE 78

Query: 93   LDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYI 152
            +  P     +G  E  ++P  ARL+N TY++ + +     V  +  VT   +        
Sbjct: 79   VGWPRIKESDGS-ESLIYPMEARLRNATYAAPLYLTATLYVDDEPYVTETFY-------- 129

Query: 153  QKEVLSDETTNIIIGRIPVMVKSDLCWMKGVE------KGDCDFDHGGYFIIKGAEKVFV 206
                         IG +P+MVKS  C +  ++      K +   D GGYFII G+E+V +
Sbjct: 130  -------------IGELPIMVKSKRCNLTRLKPSEYAKKFEDPQDFGGYFIINGSERVII 176

Query: 207  AQEQICLKRL-----------WVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEK 255
            +QE +   R            +++ ++   + Y+S      L V L         K G  
Sbjct: 177  SQEDLVTDRPIYDVGDKPSVKFLAKTISTGIGYRST-----LTVELN--------KDGVI 223

Query: 256  VLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFR 315
             +++  +  +IP  I   ALG+ +D+++V  +    +D  I   L  S+  A N+    R
Sbjct: 224  YVTLSAMPVKIPFPIYMKALGLETDEDVVKAV---SDDPDIQKELLPSLIAA-NQVAITR 279

Query: 316  KGRNALKYVD-KLIKGTTFPPG-ESTEECMNTYLFPSLHGTK-----------QKARFLG 362
            +  +AL Y+  K+  G   P   E   + ++ Y  P L  T            +KA  LG
Sbjct: 280  E--DALDYIGGKVAVGQPRPVRIERALQLLDRYFLPHLGTTTPDEKKQQEIRLKKALMLG 337

Query: 363  YMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGD 422
             +VK L++   GRRK D++D   NKR+ L G+L+ +  +       + +   L++  Y  
Sbjct: 338  QIVKGLVELQLGRRKPDDKDHVGNKRVRLVGDLMTQLFRTVFKQFLQELRSQLEK-YYAR 396

Query: 423  RTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
              +  I+  +   I+T  + +A +TG W          +G+   L R N L TL  LRR 
Sbjct: 397  GRIPHIQTIVRPDIITERVRQALATGNW------VGGKTGVSQILDRTNYLSTLSYLRRV 450

Query: 483  RQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQL- 541
               +  T    +AR  HP+ WG++C + TP+G+N GLVKNL +   ++T + E   EQL 
Sbjct: 451  VSSLSRTQPHFEARDLHPTQWGRLCAVETPEGQNVGLVKNLALLAEITTGVDEREVEQLL 510

Query: 542  FNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
            +N G   +       + G  +V+++G  IG+  ++   V+ +R  RR+ ++  ++ I   
Sbjct: 511  YNLGTVPVLKAREDGIRGA-EVYLNGRLIGIHPNAEELVATVRSLRRQGKISDEINIA-- 567

Query: 602  ELQSEVRIFMDAGRILRPLLVVENMGKIK-------SLEGKNYTFQALLDHGIIELVGTE 654
             +   V +  D GRI RPLLVVEN G++K        +   + T+  L+  G++E +  +
Sbjct: 568  HINGSVLVNCDGGRIRRPLLVVEN-GRLKLTKDIVERVRKGDLTWDDLVKMGVVEYLDAD 626

Query: 655  EEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQ 714
            EEE+   A   +  L          +TH E+  S +LG    IIP+  H+ + R  Y++ 
Sbjct: 627  EEENAHIAVDPRGDLSG--------YTHVEIIPSAILGAIASIIPYLEHNQSPRNQYEA- 677

Query: 715  KHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNG 774
              + Q++G P +N   ++D+  H L+YP+RP+  T   + +G   Y       RP    G
Sbjct: 678  AMAKQSLGLPQSNFLYKLDSRGHMLYYPERPIVTTRGLELVG---YSK-----RP---AG 726

Query: 775  QNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVN 834
            QNA+VA+  + GYN ED++++N+AS+ERGMFRS   R+Y+ E      Q      +D + 
Sbjct: 727  QNAVVALLTYTGYNIEDAVILNKASVERGMFRSVFYRTYETE-----EQKYPGGEEDRIE 781

Query: 835  FGKIQSKIGR----VDSLDDDGFPFIGANLQSGDIVIGKYA--------------DSGAD 876
                  K  R       LD+DG       + S +++IGK +                  D
Sbjct: 782  VPDSSVKGYRGPEAYSHLDEDGIAPPEVYVSSNEVLIGKTSPPRFYTTLETERILKERRD 841

Query: 877  HSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ 936
             S+ ++  E+G+V +V+++ + +G     V LR++R P LGDKF+S HGQKGV+G L  Q
Sbjct: 842  ASVAVRRGEKGIVDRVIITESPEGNKLVKVRLRELRIPELGDKFASRHGQKGVVGMLLRQ 901

Query: 937  ENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP 996
            E+ PFT  GIVPDI++NPHA PSR T GQLLE+  GK  AA G+ +       ATPF   
Sbjct: 902  EDMPFTEDGIVPDIIVNPHALPSRMTVGQLLESIAGKVGAATGQLVD------ATPFEGV 955

Query: 997  SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGP 1056
              + + + L + GF   G E +Y G TGE + + IFIG  +YQ+L HM  DK+  R  GP
Sbjct: 956  GEEDLRKLLLKLGFRWDGKEVMYSGITGEKLVADIFIGIVYYQKLHHMVADKIHARARGP 1015

Query: 1057 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVA 1116
            V  LTRQP   R R GG++ GEMERD LIAHGA+A L+ERL   SD Y M++C  C   A
Sbjct: 1016 VQILTRQPTEGRSREGGLRLGEMERDVLIAHGASALLYERLVESSDKYVMYVCELCGLPA 1075

Query: 1117 NVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFD 1169
             +         K   P C I        K  VPY  KLL QEL ++GI  K +
Sbjct: 1076 YL-------DAKTNKPRCPIHGDTGQFAKVVVPYAFKLLLQELMALGIYPKLE 1121


>gi|70794974|gb|AAZ08461.1| RNA polymerase II second largest subunit [Liriodendron tulipifera]
          Length = 942

 Score =  514 bits (1324), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 335/986 (33%), Positives = 520/986 (52%), Gaps = 103/986 (10%)

Query: 114  ARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMV 173
            ARL+N+TYS+ + V V       KRV     K G +   ++   + + T + IG++P+M+
Sbjct: 2    ARLRNLTYSAPLYVDVT------KRV----IKKGHD--CEEVTETQDFTKVFIGKVPIML 49

Query: 174  KSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSM 222
            +S  C +         E G+C +D GGYFII G+EKV +AQE++    ++V      N  
Sbjct: 50   RSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKY 109

Query: 223  GWTVAYKS-ENKRNR----LIVRLVDMSKFEDIKGGEKV-LSVYFLSTEIPIWILFFALG 276
             +    +S    +NR    + VR++  +  +    G+ +  ++ ++ TEIPI I+F ALG
Sbjct: 110  AYVAEVRSMAESQNRPPSSMFVRMLSRASAKGGSSGQYIRATLPYIRTEIPIIIVFRALG 169

Query: 277  VSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPG 336
              +DK+I+  I +   D  ++ +L  S+ +A       +  + AL Y+ K  +G T    
Sbjct: 170  FVADKDILEHICYDFSDTQMMELLRPSLEEAF----VIQNQQVALDYIGK--RGQTVGVT 223

Query: 337  ES-----TEECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNK 387
            +       +E +   + P +    +   +KA + GY++  LL    GRR  D+RD + NK
Sbjct: 224  KEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNK 283

Query: 388  RLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFST 447
            RL+LAG LL    ++      + +   +Q+ +   + V  +++ + A  +T+GL  + +T
Sbjct: 284  RLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVN-LQFAIKAKTITSGLKYSLAT 342

Query: 448  GAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKIC 507
            G W        R +G+   L R     TL  LRR    +   GK+   R  H SHWG +C
Sbjct: 343  GNWGQANAAGTR-AGVSQVLNRLTFASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGMMC 401

Query: 508  FLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVD 566
               TP+G+ CGLVKNL +   ++  S   PI E L     E   + +   +    K+FV+
Sbjct: 402  PAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVN 461

Query: 567  GDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENM 626
            G W+G+ ++    V  LR+ RR+ ++ T+V + RD    E+R++ D GR  RPL +VE  
Sbjct: 462  GCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQ 521

Query: 627  ------GKIKSL---EGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLK---DIED 674
                    I+SL   E ++  +  L+  G IE V TEEEE    +  I  L+    + ++
Sbjct: 522  RLLIKKKHIRSLQQRETQDEGWHDLVAKGFIEYVDTEEEETTMISMTISDLVSARLNPDE 581

Query: 675  KKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDT 734
                 +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DT
Sbjct: 582  AYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGIYVTNYQLRMDT 640

Query: 735  LSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLV 794
            L++ L+YPQ+PL  T   + L      H   LP      G NAIVA+  + GYNQEDS++
Sbjct: 641  LAYVLYYPQKPLVTTRAMEHL------HFRQLP-----AGINAIVAIACYSGYNQEDSVI 689

Query: 795  MNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK------IQSKIGRVDSL 848
            MN++S++RG FRS   RSY+ E       +K        +FG+      +  + G  D L
Sbjct: 690  MNQSSIDRGFFRSLFFRSYRDEEKKMGTLIKE-------DFGRPNRENTMGMRHGSYDKL 742

Query: 849  DDDGFPFIGANLQSGDIVIGKYAD-------------SGADHSIKLKHTERGMVQKVVLS 895
            DDDG    G  +   D++IGK                +  DHS  L+H+E GMV +V+L+
Sbjct: 743  DDDGLAPPGTRVSGEDVIIGKTTPIAQDESQGQASRYTRRDHSTSLRHSESGMVDQVLLT 802

Query: 896  SNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPH 955
            +N DG  F  V +R VR P +GDKFSS HGQKG +G   +QE+ P+T++GI PDI++NPH
Sbjct: 803  TNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPH 862

Query: 956  AFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGT 1015
            A PSR T GQL+E  +GK    +GK      +  ATPF   +VD I++ LH+ G+   G 
Sbjct: 863  AIPSRMTIGQLIECIMGKVAVHMGK------EGDATPFTDVTVDNISKALHKCGYQMRGF 916

Query: 1016 ERLYDGRTGEMVRSLIFIGPTFYQRL 1041
            E +Y+G TG  + ++IF+GPT+YQRL
Sbjct: 917  ETMYNGHTGRRLTAMIFLGPTYYQRL 942


>gi|68131834|gb|AAY85195.1| RNA polymerase II second largest subunit [Callistemon subulatus]
          Length = 952

 Score =  514 bits (1324), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 344/995 (34%), Positives = 525/995 (52%), Gaps = 109/995 (10%)

Query: 109  MFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGR 168
            +FP+ ARL+N+TYS+ + V V  +V  +     D  +    Q +QK         + IG+
Sbjct: 5    LFPKAARLRNLTYSAPLYVDVSMRVIKKGH---DGEELTEPQDLQK---------VFIGK 52

Query: 169  IPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV---- 218
            +P+M++S  C +         E G+C +D GGYFII G+EKV +AQE++    ++V    
Sbjct: 53   VPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 112

Query: 219  -SNSMGWTVAYKS-ENKRNR----LIVRLVDMSKFEDIKGGEKV-LSVYFLSTEIPIWIL 271
              N   +    +S    +NR    + VR++  +  +    G+ +  ++ ++ TEIPI I+
Sbjct: 113  QPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIV 172

Query: 272  FFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGT 331
            F ALG  +DK+I+  I +   D  ++ +L  S+ +A       +  + AL Y+ K  +G 
Sbjct: 173  FRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAF----VIQNQQVALDYIGK--RGA 226

Query: 332  TFPPGESTE-------ECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRRKCDN 380
            T   G + E       E +   + P +    +   +KA + GY++  LL    GRR  D+
Sbjct: 227  TV--GVTREKRIKYAKEILQKEMLPHVGVEEYCETKKAYYFGYIIHRLLLCALGRRAEDD 284

Query: 381  RDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNG 440
            RD + NKRL+LAG LL    ++      + +   +Q+ +   + V  +++ + A  +T+G
Sbjct: 285  RDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN-LQFAIKAKTITSG 343

Query: 441  LSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHP 500
            L  + +TG W        R +G+   L R     TL  LRR    +   GK+   R  H 
Sbjct: 344  LKYSLATGNWGQANAAGTR-AGVSQVLNRLTYASTLPHLRRLNSPIGREGKLAKPRQLHN 402

Query: 501  SHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGG 559
            S WG +C   TP+G+ CGLVKNL +   ++  S   PI E L   G E   + +   +  
Sbjct: 403  SQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPVVIPQ 462

Query: 560  KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRP 619
              K+FV+G W+G+ +D    V  LRR RRR ++ T+V + RD    E+RI+ D GR  RP
Sbjct: 463  ATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRP 522

Query: 620  LLVVE---------NMGKIKSLEG--KNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYL 668
            L +VE         ++  ++  EG   +  +  L+  G IE + TEEEE    +  I  L
Sbjct: 523  LFIVEKQRLLIKKKDIHALQLREGGPDDVGWHDLVAKGFIEYIDTEEEETTMISMTINDL 582

Query: 669  LK---DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPT 725
            ++   + E+     +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   
Sbjct: 583  VQARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGIYV 641

Query: 726  TNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHL 785
            TN   R+DTL++ L+YPQ+PL  T   + L      H   LP      G NAIVA+  + 
Sbjct: 642  TNYQFRMDTLAYVLYYPQKPLVTTRAMEHL------HFRQLP-----AGINAIVAIACYS 690

Query: 786  GYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK------IQ 839
            GYNQEDS++MN++S++RG FRS   RSY+ E       VK        +FG+      + 
Sbjct: 691  GYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE-------DFGRPDRANTMG 743

Query: 840  SKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD-------------SGADHSIKLKHTER 886
             + G  D LDDDG    G  +   D++IGK                S  DHSI L+H+E 
Sbjct: 744  MRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDDAQGQASRYSRRDHSISLRHSET 803

Query: 887  GMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGI 946
            G+V +V+L++N DG  F  V +R VR P +GDKFSS HGQKG +G   +QE+ P+T++GI
Sbjct: 804  GIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI 863

Query: 947  VPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLH 1006
             PDI++NPHA PSR T GQL+E  +GK  A +GK      +  ATPF   +VD I++ LH
Sbjct: 864  TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK------EGDATPFTDVTVDNISKALH 917

Query: 1007 RAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRL 1041
            R G+   G E +Y+G TG  + ++IF+GPT+YQRL
Sbjct: 918  RCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 952


>gi|375083053|ref|ZP_09730091.1| DNA-directed RNA polymerase subunit B [Thermococcus litoralis DSM
            5473]
 gi|374742289|gb|EHR78689.1| DNA-directed RNA polymerase subunit B [Thermococcus litoralis DSM
            5473]
          Length = 1118

 Score =  513 bits (1322), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 385/1188 (32%), Positives = 594/1188 (50%), Gaps = 154/1188 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            S+++E GLV   ++SYN FI +G+Q+  + FG      G  P            ++FG++
Sbjct: 20   SYWDEKGLVRQHLDSYNAFIDHGMQEVVNEFG------GVKPDIPD------FEVKFGRI 67

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             L +P F   + G    ++P  AR++N+TYS+ + +++   V             G EQ 
Sbjct: 68   RLGEPEFQEAH-GQRKPLYPMDARIRNLTYSAPIFLEMIPVV------------KGIEQ- 113

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
                    E   + IG +PVM+KS +C + G      +  G+   D GGYFII G+E+V 
Sbjct: 114  --------EPVEVRIGELPVMLKSKICRLYGLSDEELIAHGEDPKDPGGYFIINGSERVI 165

Query: 206  VAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVD-------MSKFEDIKGGEKVLS 258
            V+ E +   R  V          + + ++NR I +          +   E  K G   +S
Sbjct: 166  VSIEDLAPNRTLV----------EIDERQNRYIAKCFSYRHGYRALITVERRKDGLLYVS 215

Query: 259  VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGR 318
            +  +   I    +  ALG+ SDKEIV   D    +  I  +LF ++ DA +     +   
Sbjct: 216  IPNVPGVIKFVYVMRALGLESDKEIV---DAVSNNPEIQQVLFDNLEDASD----IQTQE 268

Query: 319  NALKYVDKLIKGTTFPPGE----STEECMNTYLFPSLHGTKQ----KARFLGYMVKCLLQ 370
             AL Y+ K  K     P E      +  ++  L P +  + +    KA +LG M   +++
Sbjct: 269  EALDYIGK--KAMPGQPKEYRLRRAQSIIDNNLLPHMGVSPEDRIRKAYYLGMMALKVIE 326

Query: 371  AYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRM----AKALQRDLYGDR-TV 425
               G R  D++D + NKRL+LAG+LL    +V      K M     K  QR   G++ T 
Sbjct: 327  LSLGLRGEDDKDHYANKRLKLAGDLLRDLFRVAFGQLVKDMQYQLTKTYQRK--GEKYTF 384

Query: 426  RPIEYYLDAS----ILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRR 481
            + I+ ++  S    +LT  +  A +TGAW  P  RT    G+   L R N + TL  LRR
Sbjct: 385  QDIQRFVRNSVRPDVLTERIEHALATGAW--PGGRT----GVSQLLDRTNFMSTLSHLRR 438

Query: 482  TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSIL-EPIFEQ 540
                +       +AR  H +HWG+IC   TP+G NCGLVKNL +   ++T+I  E + E 
Sbjct: 439  VTSPLSREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMSQITTAIPEEEVLEY 498

Query: 541  LFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKR 600
            L + G+  + +         ++++++G  IG  KD +S V++++  RR   +   + +  
Sbjct: 499  LESLGIVHIEEKRPEP--EDWRIYLNGVLIGTYKDGISLVNKIKSDRRAGRISDVINVAY 556

Query: 601  DELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIELVGTE 654
             E   EV I  D GR+ RPL++VE+         +++++     +  L+  G+IE +  E
Sbjct: 557  YEDVREVYINSDDGRVRRPLIIVEDGIPKLTREHVEAIKKGTLKWSDLVRMGVIEYLDAE 616

Query: 655  EEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQ 714
            EEE+   A     + K+         TH E+  + +LGL   ++P+  H+ A R  Y + 
Sbjct: 617  EEENAYVATWPWEVTKE--------HTHLEIMPAAILGLPASLVPYPEHNAAPRNTYGA- 667

Query: 715  KHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNG 774
              + Q++G    N  IRVDT  H + YPQ PL  + I + +G           RP    G
Sbjct: 668  GMAKQSLGLGWANFRIRVDTRGHLMHYPQIPLVNSRIMEAVG--------FEQRP---AG 716

Query: 775  QNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEM--QVKRRSSDDM 832
            QN +VAV  + GYN ED+++MN+AS+ERG+ RS   R+Y+AE + K M  Q  +    D 
Sbjct: 717  QNFVVAVLSYGGYNMEDAVIMNKASIERGLARSTFFRTYEAE-EKKYMGGQTDKFEIPDP 775

Query: 833  VNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGK---------YADSGA-------D 876
               G +  K  R   LD+DG  F  + ++  D+++ +          A  GA       +
Sbjct: 776  TVRGFLGEKYYR--HLDEDGIIFPESKVEGKDVLVARTSPPRFLEEQAGLGAGILQGRRE 833

Query: 877  HSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ 936
             SI ++  E+G+V KV+L+   DG     V++R +R P  GDKF+S HGQKGV+G +  Q
Sbjct: 834  TSITMRPGEKGIVDKVILTETGDGTKLVKVTVRDLRIPEFGDKFASRHGQKGVIGLIVPQ 893

Query: 937  ENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP 996
            E+ P+T  GIVPD+++NPH  PSR T GQL+EA  GK +A+L      G +   T F   
Sbjct: 894  EDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGK-VASL-----KGRRIDGTAFIGE 947

Query: 997  SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGP 1056
              + + ++L   GF   G E +YDG TG  + + IF+G  +YQRL HM  DK+  R+ GP
Sbjct: 948  PEEKLRKELEELGFRHNGREVMYDGITGRKLEADIFVGVIYYQRLHHMVADKLHARSRGP 1007

Query: 1057 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVA 1116
            V  LT+QP   R R GG++FGEMERD LI HGA+  L ERL   SD  ++ +C  C ++A
Sbjct: 1008 VQVLTKQPTEGRAREGGLRFGEMERDVLIGHGASMLLVERLLEESDKTEVWVCESCGHLA 1067

Query: 1117 NVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
               +R      KV   YC +C   + I K  + Y  KLL  E+ +M I
Sbjct: 1068 VEDKR----RDKV---YCPVCGEEEKISKVEISYAFKLLLDEIKAMVI 1108


>gi|146414794|ref|XP_001483367.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Meyerozyma
            guilliermondii ATCC 6260]
          Length = 1156

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 374/1206 (31%), Positives = 582/1206 (48%), Gaps = 159/1206 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++S+N F+   L+K   +    +V    DP    +   +Y  +R G  
Sbjct: 45   AFLKVKGLVKQHLDSFNFFVDVDLKKIVQA--NELVLSDVDP----DFYLKYLDIRVGHK 98

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
            +   P      G  E  + P   RL+++TYS+ + V V+   YT+          GR+  
Sbjct: 99   STSSP------GTKEVILPPHECRLRDLTYSAPIYVDVE---YTR----------GRKII 139

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVF 205
            + K+        + IGR+P+M+KS+ C + G+         +C  D GGYFI+ G EKV 
Sbjct: 140  MHKD--------LEIGRMPIMLKSNKCILDGINDHQMAKLDECPIDPGGYFIVNGTEKVI 191

Query: 206  VAQEQICLKRLWVS--NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKV-LSVYFL 262
            + QEQ+   R+ V      G   A  + +   R        SK   I   EK+ L    +
Sbjct: 192  LIQEQLSKNRIIVEADEKKGIVQASVTSSTHER-------KSKTYVITKNEKIYLKHNSI 244

Query: 263  STEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALK 322
              ++PI I+  A G++SD EI+ L+   C        LFA   +   + + F + + AL 
Sbjct: 245  GEDVPIVIILKAAGITSDLEILQLV---CGSNPQYQDLFAVNFEEAARLEVFTQ-QQALN 300

Query: 323  YVDKLIK------GTTFPPGESTEECMNTYLFPSLHGT----KQKARFLGYMVKCLLQAY 372
            YV K +K             +   E + T +   +       ++KA ++  M + +L   
Sbjct: 301  YVGKRVKTVRRAGAPKLSQLQEGIEAIATTIIAHITVDDLQFREKALYIAMMARRVLMTM 360

Query: 373  SGRRKCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKRMAKALQRDLYG 421
               +  D+RD   NKRLELAG+L+             + K +I    K+ ++AL+ D   
Sbjct: 361  HNPKMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNSDFKANIDKILKKPSRALEFDAL- 419

Query: 422  DRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRR 481
                  +   + ++ +T G++RA STG WS    + ER +G+   L R + +  L  + R
Sbjct: 420  ------LSINIHSNNITMGMNRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALGMMTR 472

Query: 482  TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLVSTSILEPIFEQ 540
               Q + + KV   R   PS +G +C   TP+GE CGLVKNL + T + +    EPI   
Sbjct: 473  ISSQFEKSRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEEPIRLV 532

Query: 541  LFNSGMEKL--ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEI 598
             F  G E +   D A+    G F ++++G  IG  +    FV   R  RR  ++   + I
Sbjct: 533  CFALGCEDILEVDSATLHADGNFGIYLNGTIIGTTRFPAQFVGNFRALRRSGKVSPFISI 592

Query: 599  KRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGIIELV 651
              +  Q+ V+I  D GR+ RPL++V++  K       +K L    + F+  + HG++E +
Sbjct: 593  HTNTHQNAVQIATDGGRVCRPLIIVDSKNKANVKAVHLKKLMAGEWVFEDFIKHGLVEYL 652

Query: 652  GTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLY 711
               EE D   A       +D+E  + I  TH E++   +LG   G+IP+ +H+ + R  Y
Sbjct: 653  DVNEENDSFIAL----YERDLEANQNI--THLEIEPFTVLGAVAGLIPYPHHNQSPRNTY 706

Query: 712  QSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPEL 771
            Q      QAIG    N   R+DTL + + YPQ+P+ +T   +           ++   +L
Sbjct: 707  QC-AMGKQAIGAIAYNQFRRIDTLLYLMVYPQQPMVKTKTIE-----------LIDYDKL 754

Query: 772  YNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDD 831
              GQNA VAV  + GY+ ED+LV+N+AS++RG  R + +R     +       K     D
Sbjct: 755  PAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCQVLRKNTVNLKRYPNHTK-----D 809

Query: 832  MVNFGKIQSK---IGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSI--------- 879
            +V+  ++  +   I    SL  DG   +G  +++G + + K   + A  S+         
Sbjct: 810  VVSGMRVDEQGEPIFPHASLGPDGLGEVGMKVENGQVYVNKCVPTNASESVLGANEPHHQ 869

Query: 880  -----------KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKG 928
                         +  E   + +V++S +D+ +    V LRQ R P LGDKFSS HGQKG
Sbjct: 870  QNVESHRETPAYYRGPEPSYIDQVMMSVSDNDQTLIKVLLRQTRRPELGDKFSSRHGQKG 929

Query: 929  VLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKR 988
            V G +  QE+ PF   GIVPDI++NPH FPSR T G+++E   GK       G+ +G   
Sbjct: 930  VCGIIVQQEDLPFNDDGIVPDIIMNPHGFPSRMTVGKMIELISGKA------GVLNGSLE 983

Query: 989  YATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDK 1048
            Y T F    ++ ++E L + GF+  G + LY G TGE +++ IF GP +YQ+L HM  DK
Sbjct: 984  YGTCFGGSKLEDMSEILVKNGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDK 1043

Query: 1049 VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHI 1108
            +  R  GP   LTRQP   R R GG++ GEMERDC+IA+GA+  L ERL   SD++++ +
Sbjct: 1044 MHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMLSSDAFEVDV 1103

Query: 1109 CRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT--L 1166
            C  C             G      +C  C S ++++K  +PY AKLL QEL SM I   L
Sbjct: 1104 CNNC-------------GLMGYNSWCTSCKSSENVIKMTIPYAAKLLFQELLSMNIAPRL 1150

Query: 1167 KFDTEF 1172
            K D  F
Sbjct: 1151 KLDDVF 1156


>gi|6606109|gb|AAF19067.1|AF107795_1 DNA-dependent RNA polymerase II RPB140 [Trichophyton rubrum]
          Length = 1109

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 364/1113 (32%), Positives = 549/1113 (49%), Gaps = 150/1113 (13%)

Query: 82   RYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT-QKRVT 140
            R   ++FG V L +PS   G+G     M P+ ARL+N+TY+S + + +  ++   ++R+ 
Sbjct: 29   RRYELKFGTVMLARPSMTEGDGATS-IMLPQEARLRNLTYASPLYLGISKKIMEGRERLL 87

Query: 141  SDKF-------------KTGREQYI---QKEVLSDETT--NIIIGRIPVMVKSDLCWMKG 182
            S++              +  R  Y+   +K  + DE    NI IG++P+M+KS  C +K 
Sbjct: 88   SERDEEEEEIEEKGDEERRNRGTYLHWERKPTMEDEAEEENIFIGKMPIMLKSKYCILKD 147

Query: 183  VEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSE 231
            + +       +C +D GGYF+I G+EKV +AQE+     + V      +   +    +S 
Sbjct: 148  LGEQALYNWNECPYDSGGYFVINGSEKVLIAQERSAGNIVQVFKKAPPSPTPYVAEIRSA 207

Query: 232  NKRNRLIVRLVDM---SKFEDIKGGEKVL---SVYFLSTEIPIWILFFALGVSSDKEIVN 285
             ++   I+  + +   SK +  KGG       ++ ++ T+IPI ++F ALGV SD++I+N
Sbjct: 208  VEKGSRILSQLSIKLFSKGDSAKGGFGPTIRSTLPYIKTDIPIVVVFRALGVVSDEDILN 267

Query: 286  LIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNT 345
             I +   D S+L +L   I +     D       AL ++ K  +G++  P    +E    
Sbjct: 268  HICYDRNDTSMLEMLKPCIEEGFVIQDR----EVALDFISK--RGSS--PMSMNQEKRVR 319

Query: 346  Y--------LFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAG 393
            Y          P +  ++    +KA FLGYMV  LLQ   GRR  D+RD F  KRL+LAG
Sbjct: 320  YARDIIQKEFLPHISQSEGSETRKAFFLGYMVHRLLQCALGRRYVDDRDHFGKKRLDLAG 379

Query: 394  ELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHP 453
             LL    +V      K + K +QR +   R +  +   + AS LT GL  A +TG W   
Sbjct: 380  PLLANLFRVLFMRLTKDLYKYVQRCVETGRQLY-LNIGVKASTLTGGLKYALATGNWGEQ 438

Query: 454  FKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPD 513
             K     +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+
Sbjct: 439  KKAASSKAGVSQVLNRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPE 498

Query: 514  GENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGV 572
            G+ CGLVKNL +   ++  +  EPI + +     E L +          KVFV+G W+GV
Sbjct: 499  GQACGLVKNLALMCCITVGTPSEPIIDFMIQRNREVLEEFEPQVSPNSTKVFVNGVWVGV 558

Query: 573  CKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK---- 628
             +D    V  ++  RRR  +  +V +  D    E +IF DAGR+ RPL VV+N  K    
Sbjct: 559  HRDPAHLVGTVQSLRRRNMISHEVSLVWDIRDREFKIFTDAGRVCRPLFVVDNDPKSENS 618

Query: 629  ---------IKSLEG---------------KNYTFQALLDHGIIELVGTEEEEDCCTAW- 663
                     I  LE                +++ +  L+  G+IE V  EEEE       
Sbjct: 619  GSLVLVKEHIHKLEADKELPPDLDPEERRERHFGWDGLVKSGVIEYVDAEEEETIMIVMT 678

Query: 664  ------------GIKYLLKDIEDK----------KPIKFTHCELDMSFLLGLSCGIIPFA 701
                        G     +D  D+          K   +THCE+  S +LG+   IIPF 
Sbjct: 679  PEDLEASKQYQAGYGMPEEDTTDRNRRVKSNLSQKAHTWTHCEIHPSMILGICASIIPFP 738

Query: 702  NHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYG 761
            +H+ + R  YQS     QA+G   TN   R++T+++ L+YPQ+PL  T   +        
Sbjct: 739  DHNQSPRNTYQS-AMGKQAMGVFLTNFEQRMETMANILYYPQKPLATTRSME-------- 789

Query: 762  HNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKE 821
                L   EL  G+N IVA+  + GYNQEDS++MN++S++RG+FRS   R+Y        
Sbjct: 790  ---FLKFRELPAGRNVIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMIG 846

Query: 822  MQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD--------- 872
            + V  R    M +   ++ K G  D +DDDG    G  +   DI+IGK +          
Sbjct: 847  LTVVERFEKPMRS-DTLRMKHGTYDKVDDDGIVSPGVRVSGEDIIIGKTSPLAPEAEELG 905

Query: 873  ------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQ 926
                  +  D S  L+ TE G+V +V++S+++D   F  V +R  + P +GDKF+S HGQ
Sbjct: 906  QRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQ 965

Query: 927  KGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGL 986
            KG +G     E+ PFT +G+ PD++INPHA PSR T   L+E  L K          S L
Sbjct: 966  KGTIGITYRHEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSK---------VSSL 1016

Query: 987  KRY---ATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIH 1043
            + Y   ATPF   +VD+++  L   G+   G E +Y+G TG  + + +F+GPT+YQRL H
Sbjct: 1017 RGYEGDATPFTDVTVDSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRH 1076

Query: 1044 MSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKF 1076
            M +DK+  R  GP   LTRQPV  R R GG++F
Sbjct: 1077 MVDDKIHARARGPTQILTRQPVEGRARDGGLRF 1109


>gi|401018|sp|P31814.1|RPOB_THECE RecName: Full=DNA-directed RNA polymerase subunit B
 gi|48140|emb|CAA47722.1| Subunit B of DNA-dependent RNA polymerase [Thermococcus celer]
          Length = 1122

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 380/1202 (31%), Positives = 597/1202 (49%), Gaps = 180/1202 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +++ E GLV   ++SYN FI +G+Q+  D FG      G  P            ++FG+V
Sbjct: 22   AYWKEKGLVRQHLDSYNAFIDHGMQEVIDEFG------GVKPDIPD------FEVKFGKV 69

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             L +P F    G     ++P  AR++N+TYS+ + +++   V                  
Sbjct: 70   RLGEPEFQEAQG-QRKPLYPMDARIRNLTYSAPIYLELIPVVNG---------------- 112

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
                 +S E   + IG +P+M+KS  C + G      ++ G+   D GGYFI+ G+E+V 
Sbjct: 113  -----VSQEAVEVRIGELPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFIVNGSERVI 167

Query: 206  VAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVR----------LVDMSKFEDIKGGEK 255
            V+ E +   +  V          + + ++NR+I +          L+ + + +D      
Sbjct: 168  VSIEDLAPNKTLV----------ERDERQNRIIAKCFSYRHGYRALITVERRKD-----G 212

Query: 256  VLSVYFLSTEIPIWILFF--ALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDE 313
            +L V   +   P+  ++   ALG+ SD+EIV  +    +D  I ++LF ++ DA +   +
Sbjct: 213  ILYVKLPNVPRPVKFVYVMRALGLLSDREIVEAV---SDDPRIQHVLFDNLEDASDVTTQ 269

Query: 314  FRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSL----HGTKQKARFLG 362
                  AL Y+ KL       PG+  E         ++  L P +       K KA +LG
Sbjct: 270  ----EEALDYIGKLSL-----PGQPKEYRLRRAQNIIDNNLLPHMGVEEKDRKAKAYYLG 320

Query: 363  YMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARK----RMAKALQRD 418
             M   +L+   G R  D++D + NKRL+LAG+LL    +V      K    +M K  QR 
Sbjct: 321  MMALRVLELSLGLRGEDDKDHYANKRLKLAGDLLMDLFRVAFGQLVKDMQYQMTKTYQRK 380

Query: 419  LYGDR-TVRPIEYYLDASI----LTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPL 473
              G+R T   I+ ++  SI    L+  +  A +TG+W  P  RT    G+   L R N +
Sbjct: 381  --GERYTFENIQRFVRNSIRPDVLSERIEHALATGSW--PGGRT----GVSQLLDRTNYI 432

Query: 474  QTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI 533
             TL  LRR    +       +AR  H +HWG+IC   TP+G NCGLVKNL +   ++T +
Sbjct: 433  STLSHLRRVTSPLSREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMSQITTGV 492

Query: 534  LEP-IFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL 592
             E  + E L   G+  + +         ++++++G  +G  +D   FV+ +R  RR  ++
Sbjct: 493  PEEEVREYLERLGVVPIEERRPNP--DLWRLYLNGVLVGTVEDGEGFVNRIRTDRRSGKI 550

Query: 593  P--TQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLD 644
                 V + +DE   E+ +  D GR+ RPL++VEN         +++++  + T+  L+ 
Sbjct: 551  SDIINVALYQDEDVKEIYVNSDDGRVRRPLIIVENGRPKLTREHVEAIKNGSLTWSDLVK 610

Query: 645  HGIIELVGTEEEEDCCTA---WGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFA 701
             G+IE +  EEEE+   A   W +             + TH EL  + +LG+   ++P+ 
Sbjct: 611  MGVIEYLDAEEEENALVATWPWEVTE-----------EHTHLELMPAAILGIPASLVPYP 659

Query: 702  NHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYG 761
             H+   R  Y +   + Q++G    N  IRVDT  H + YPQ PL  + I   +G     
Sbjct: 660  EHNARPRNTYGA-GMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVG----- 713

Query: 762  HNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKE 821
                  RP    GQN +VAV  + GYN ED+++MN+AS+ERG+ RS   R+Y+AE + + 
Sbjct: 714  ---FEERPA---GQNFVVAVLSYAGYNMEDAIIMNKASIERGLARSTFFRTYEAE-EKRY 766

Query: 822  M--QVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA-------D 872
            +  Q  R    D    G +  +  R   LD+DG  F  + +   D+++G+ +        
Sbjct: 767  LGGQTDRFEIPDPTIQGYLGERYYR--HLDEDGIIFPESKVNGKDVLVGRTSPPRFLEEQ 824

Query: 873  SGA---------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSM 923
            SG          + S+ ++ +E G+V KV+++   DG     V+ R +R P  GDKF+S 
Sbjct: 825  SGLGGIILQERRETSLTVRPSETGVVDKVIITETGDGTKLVKVTTRDLRIPEFGDKFASR 884

Query: 924  HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGIC 983
            HGQKGV+G +  QE+ P+T  GIVPD+++NPH  PSR T GQL+EA  GK +A+L     
Sbjct: 885  HGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGK-VASL----- 938

Query: 984  SGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIH 1043
             G +   T F     + + ++L   GF   G E +YDG TG  + + +F+G  +YQRL H
Sbjct: 939  KGRRVDGTAFIGEPEEKLRKELEELGFKHSGREVMYDGITGRRLEADVFVGVIYYQRLHH 998

Query: 1044 MSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDS 1103
            M  DK+  R+ GPV  LT+QP   R R GG++FGEMERD LI HGAA  L ERL   SD 
Sbjct: 999  MVADKMHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLIGHGAAMLLIERLLEESDK 1058

Query: 1104 YQMHICRKCKNVANVIQRVVGGGRKVRGP-YCRICDSGDDIVKANVPYGAKLLCQELFSM 1162
             ++ +C  C ++A   +R        RG  YC +C   + I K  + Y  KLL  EL +M
Sbjct: 1059 TEVWVCENCGHIALEDKR--------RGKVYCPVCGEEERISKVEMSYAFKLLLDELKAM 1110

Query: 1163 GI 1164
            GI
Sbjct: 1111 GI 1112


>gi|46669|emb|CAA32924.1| RNA polymerase subunit B (AA 1-1126) [Sulfolobus acidocaldarius]
          Length = 1126

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 389/1207 (32%), Positives = 584/1207 (48%), Gaps = 154/1207 (12%)

Query: 21   FLKTFCRKA-AVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVE-PGYDPSKKGE 78
             L T  R A A SFF   GLV   ++S+N+F++N LQ+     GE + E PG        
Sbjct: 1    MLDTESRWAIAESFFKTRGLVRQHLDSFNDFLRNKLQQVIYEQGEIVTEVPGL------- 53

Query: 79   GEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKR 138
                   ++ G++  +KPS    + G   ++ P  ARL+N+TYSS + + +         
Sbjct: 54   ------KIKLGKIRYEKPSIRETDKGPMREITPMEARLRNLTYSSPIFLSM--------- 98

Query: 139  VTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVK------SDLCWMKGVEKGDCDFDH 192
                      E  I+ E +      I IG +P+M+K      S+L   K +E G+   D 
Sbjct: 99   -------IPVENNIEGEPIE-----IYIGDLPIMLKSVADPTSNLPIDKLIEIGEDPKDP 146

Query: 193  GGYFIIKGAEKVFVAQEQICLKRLWVS-NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIK 251
            GGYFI+ G+EK+ +AQE +   R+ V     G  + + ++   +    R+  M   E +K
Sbjct: 147  GGYFIVNGSEKMIIAQEDLATNRVLVDYGKSGSNITHVAKVTSSAAGYRVQVM--IERLK 204

Query: 252  GGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKC 311
                 +S   +   IP  I+  ALG  +D++IV  +     D  I N L  S+  A +  
Sbjct: 205  DSTIQISFATVPGRIPFAIIMRALGFVTDRDIVYAVSL---DPQIQNELLPSLEQASS-- 259

Query: 312  DEFRKGRNALKYVDKLIKGTTFPPG-------ESTEECMNTYLFPSLHGT-----KQKAR 359
                    AL ++     G     G       +  E+ ++ Y  P L GT     K+K  
Sbjct: 260  --ITSAEEALDFI-----GNRVAIGQKRENRIQKAEQVIDKYFLPHL-GTSPEDRKKKGY 311

Query: 360  FLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDL 419
            +L   V  +L+ Y GRR+ D++D + NKR+ LAG+L     +V      K +   L++  
Sbjct: 312  YLASAVNKILELYLGRREPDDKDHYANKRVRLAGDLFTSLFRVAFKAFVKDLVYQLEKSK 371

Query: 420  YGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDL 479
               R +  +   + A I+T  +  A +TG W     RT    G+   L R N L  L  L
Sbjct: 372  VRGRRLS-LTALVRADIITERIRHALATGNWVG--GRT----GVSQLLDRTNWLSMLSHL 424

Query: 480  RRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFE 539
            RR    +       +AR  H + WG++C   TP+G N GLVKNL +   VS  I E + E
Sbjct: 425  RRVVSSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALLAQVSVGINESVVE 484

Query: 540  QL-FNSGMEKLAD----------DASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRR 588
            ++ +  G+  + D          D    +    KV+++G  +G  +D      ++R  RR
Sbjct: 485  RVAYELGVVSVEDVIRRISEQNEDVEKYMSWS-KVYLNGRLLGYYEDGKELAKKIRESRR 543

Query: 589  RKELPTQVEIK--RDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQ 640
            + +L  +V +     +  +EV I  DAGR+ RPL++V N         IK L+    TF 
Sbjct: 544  QGKLSDEVNVAYIATDYLNEVHINCDAGRVRRPLIIVNNGTPLVDTEDIKKLKNGEITFD 603

Query: 641  ALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPF 700
             L+  G IE +  EEEE+   A   + L  D         TH E+  S +LG+   IIP+
Sbjct: 604  DLVKQGKIEFIDAEEEENAYVALNPQDLTPD--------HTHLEIWPSAILGIIASIIPY 655

Query: 701  ANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGY 760
              H+ + R  YQS   + Q++G   +N  IR DT +H L YPQ PL +T +   LG  GY
Sbjct: 656  PEHNQSPRNTYQS-AMAKQSLGLYASNYQIRTDTRAHLLHYPQMPLVQTRM---LGVIGY 711

Query: 761  GHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNK 820
                   RP    G NAI+A+  + GYN EDS++MN++S+ERGM+RS   R Y  E    
Sbjct: 712  ND-----RPA---GANAILAIMSYTGYNMEDSIIMNKSSIERGMYRSTFFRLYSTE---- 759

Query: 821  EMQVKRRSSDDMVN-FGKIQSKIGR--VDSLDDDGFPFIGANLQSGDIVIGKYA------ 871
            E++      D +V     ++   G+     L+D+G       ++ GD++IGK +      
Sbjct: 760  EVKYPGGQEDKIVTPEAGVKGYKGKDYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQ 819

Query: 872  --------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSM 923
                     +  D SI  +H E G+V  V+++   +G     V +R +R P +GDKF++ 
Sbjct: 820  EFKELSPEQAKRDTSIVTRHGENGIVDLVLITETLEGNKLVKVRVRDLRIPEIGDKFATR 879

Query: 924  HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGIC 983
            HGQKGV+G L  Q + P+T +GIVPDI++NPHA PSR T GQ++EA  GK  A  GK + 
Sbjct: 880  HGQKGVVGILIDQVDMPYTAKGIVPDIILNPHALPSRMTIGQIMEAIGGKYAALSGKPVD 939

Query: 984  SGLKRYATPF-ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLI 1042
                  ATPF  TP +  + +++ + G     TE +YDGRTG+ ++S I  G  +YQ+L 
Sbjct: 940  ------ATPFLETPKLQEMQKEILKLGHLPDSTEVVYDGRTGQKLKSRILFGIVYYQKLH 993

Query: 1043 HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSD 1102
            HM  DK+  R  GPV  LTRQP   R R GG++FGEMERDCLI  G A  + +RL   S 
Sbjct: 994  HMVADKMHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLIGFGTAMLIKDRLLDNSY 1053

Query: 1103 SYQMHICRKCKNVANVIQRVVGGGRKVRGPY-CRICDSGDDIVKANVPYGAKLLCQELFS 1161
               ++IC +C          VG   + +  Y C +      +    V Y  KLL QEL S
Sbjct: 1054 KAVVYICDQCG--------YVGWYDRSKNRYVCPVHGDKSVLHPVTVSYAFKLLIQELMS 1105

Query: 1162 MGITLKF 1168
            M I+ + 
Sbjct: 1106 MVISPRL 1112


>gi|388858433|emb|CCF48027.1| probable DNA-directed RNA polymerase III, 130 KD subunit [Ustilago
            hordei]
          Length = 1169

 Score =  513 bits (1320), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 368/1204 (30%), Positives = 574/1204 (47%), Gaps = 156/1204 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I SYN F+ + L+    +  E I     DP            +++  +
Sbjct: 55   AFLQVKGLVKQHIESYNYFVDHDLKNIIKA-NEKITS-DIDPK---------FYLKYTDI 103

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
            T+ +P  + G+   +  + P+  RL+++TYS+ + V +++              T   + 
Sbjct: 104  TVGEPRRYDGDAL-QRPITPQECRLRDITYSAHIFVNIEY--------------TRGGKI 148

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
            I+++       N+ IGRIPVM++S+ C +         +  +C  D GGYF++KG EKV 
Sbjct: 149  IRRK-------NVAIGRIPVMLRSNKCVLSNKSEKELAKMSECPLDPGGYFVVKGTEKVI 201

Query: 206  VAQEQICLKRLWVS--NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLS 263
            + QEQ+   R+ V      G   A  + +   R          +   K G+  L    L 
Sbjct: 202  LVQEQLSKNRIIVEADTKKGSVSASVTSSTHER------KSKSYVLTKHGKIFLKHNSLH 255

Query: 264  TEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKY 323
             +IPI + F A+G+ +D+EI+ L+        I   LFA   +   +   + + + AL Y
Sbjct: 256  EDIPIAVAFKAMGIQADREILQLV---VGHDDIYKELFAINLEEAARLGIYTR-KQALDY 311

Query: 324  VDKLIKGTT------FPPGESTEECMNTYLFPSLH----GTKQKARFLGYMVKCLLQAYS 373
            +    K +        P  E   + + T +   +       + KA ++  MV+ +L A  
Sbjct: 312  IGARAKASRKPLSMRRPLSEEALDVLATVIMAHVPVERLNFRPKAIYIASMVRRVLVAMQ 371

Query: 374  GRRKCDNRDDFRNKRLELAGELL-----------ERELKVHIAHARKRMAKALQRDLYGD 422
              +K D+RD   NKRLELAG+LL             +LK++I    K+  + ++ D +  
Sbjct: 372  DEKKVDDRDYVGNKRLELAGQLLALLFEDLFKKFNSDLKINIDKVLKKPNRTVEFDAFN- 430

Query: 423  RTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
                  +++ +   +T G  RA STG WS    + ER +GI   L R + +  L  + R 
Sbjct: 431  ------QFHFNGDYITAGFVRAISTGNWSLKRFKMER-AGITHVLSRLSYIAALGMMTRI 483

Query: 483  RQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQL 541
              Q + T KV   R   PS WG +C   TP+GE CGLVKNL +T  ++T + E PI +  
Sbjct: 484  SSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALTTHITTDVEEEPIAKLA 543

Query: 542  FNSGME--KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIK 599
            F  G+E   L   A       + V+++G+ +GV +    FV + RR RR   +   V I 
Sbjct: 544  FTLGVEDVHLLTGAELYRPDSYIVYLNGNVLGVTRFPQRFVMQFRRLRRAGHISEFVSIY 603

Query: 600  RDELQSEVRIFMDAGRILRPLLVVENM--------GKIKSLEGKNYTFQALLDHGIIELV 651
             +     V I  D GRI RPL++V+ +          I+ L+     F   L +G++E +
Sbjct: 604  TNSHHQTVYIASDGGRICRPLIIVDPVTGQPRVTDSHIQQLKAGIRCFNDFLHNGLLEYL 663

Query: 652  GTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLY 711
               EE D   A   +       D KP   TH E++   +LG   G+IP+ +H+ + R+ Y
Sbjct: 664  DVNEENDSNIALYER-------DIKPRYTTHLEIEPFTILGAVAGLIPYPHHNQSPRLTY 716

Query: 712  QSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPEL 771
            Q      QA+     N  +R+DTL + + YPQ+P+ +T   D +G             +L
Sbjct: 717  QC-AMGKQAVSAIAYNQFLRIDTLLYLMVYPQQPMVKTRTIDLIG-----------YDKL 764

Query: 772  YNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDD 831
              GQNA+VAV    GY+ ED+L++N+ASL+RG  R + ++     +         R +D 
Sbjct: 765  PAGQNAMVAVMSFSGYDIEDALLLNKASLDRGFGRCQTMKKSSTILRKYPNGTHDRLADA 824

Query: 832  MVN--FGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHS----------- 878
             V+   GK Q    R D L+ DG   +G  ++ GD+ + K     A+ +           
Sbjct: 825  PVDESTGKRQK---RYDILEADGIAGVGERVEQGDVFVNKQTPVNANDNSSAAIMIGASN 881

Query: 879  -----------IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQK 927
                       +  K    G V +V+++  D  +      +RQ R P LGDKFSS HGQK
Sbjct: 882  AAASVAYKSAPLSYKPPVSGYVDQVLITDTDSDQTLIKALIRQTRRPELGDKFSSRHGQK 941

Query: 928  GVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLK 987
            GV G + +QE+ PF+ QGI PDI++NPH FPSR T G+++E   GK       G+ +G  
Sbjct: 942  GVCGLIVNQEDMPFSDQGINPDIIMNPHGFPSRMTVGKMIELLSGKA------GVITGNL 995

Query: 988  RYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSED 1047
            +Y T F    V+ +++ L   G++  G E L  G TG+ +   ++ GP +YQRL HM +D
Sbjct: 996  QYGTAFGGSKVEDMSQILVDHGYNYGGKETLTSGITGQPLECYVYFGPIYYQRLKHMVQD 1055

Query: 1048 KVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMH 1107
            K+  R  GP   LTRQP   R R GG++ GEMERDCLI +GA   L ERL   SD++ +H
Sbjct: 1056 KMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGATQLLLERLMISSDAFTVH 1115

Query: 1108 ICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLK 1167
             C++C             G      +C  C SG  +VK  +PYG KL+ QEL +M +  +
Sbjct: 1116 ACQRC-------------GLMGYNGWCPFCGSGKHVVKLTIPYGTKLMLQELMAMQVVPR 1162

Query: 1168 FDTE 1171
               E
Sbjct: 1163 LILE 1166


>gi|352682853|ref|YP_004893377.1| DNA-directed RNA polymerase subunit B [Thermoproteus tenax Kra 1]
 gi|350275652|emb|CCC82299.1| DNA-directed RNA polymerase subunit B [Thermoproteus tenax Kra 1]
          Length = 1127

 Score =  513 bits (1320), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 374/1186 (31%), Positives = 577/1186 (48%), Gaps = 142/1186 (11%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F  + G+V HQI ++N+F++  L K  +  G              E E +   +   +V
Sbjct: 30   AFIRDRGIVDHQIRAFNDFVERRLPKIVEEMGTV------------ETEIKGLKVVIERV 77

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             +  P     +G  E  ++P  ARL+N TYS+ + + +                     Y
Sbjct: 78   EIGWPRIKEPDG-SESLIYPMEARLRNATYSAPIYLTMTL-------------------Y 117

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVE------KGDCDFDHGGYFIIKGAEKVF 205
            +  E  + ET  I  G +P++VKS  C +  ++      K +   D GGYFII G+E+V 
Sbjct: 118  VDDEPYATET--IYAGELPIVVKSKRCNLTRLKPEEYAKKFEDPEDPGGYFIINGSERVV 175

Query: 206  VAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTE 265
            ++QE +   R         TV Y ++        R     ++   K G   +++  +   
Sbjct: 176  ISQEDLVTDRPIYDVGDKPTVRYLAKVISTGPGYRATMTVEYH--KDGVIYVTLSAIPVR 233

Query: 266  IPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVD 325
            IP  +   A+G+ SD++IV  +    +D  I   L  S+  A  +    R   +AL ++ 
Sbjct: 234  IPFTVYMRAMGLESDQDIVLAV---SDDPDIQKELLPSLL-AGQEIATTRD--DALDFIG 287

Query: 326  -KLIKGTTFPPG-ESTEECMNTYLFPSLHGTK-----------QKARFLGYMVKCLLQAY 372
             K+  G   P   E   + ++ Y  P+L+  K           +KA  LG + K L++  
Sbjct: 288  GKIAVGQPRPIRIERALQILDKYFLPNLNPQKPDDKAMQEARIKKALLLGQVAKGLIEMQ 347

Query: 373  SGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYL 432
             GRR+ D++D   NKR+ L  +LL +  +  +    + +   L++  Y    +  ++  +
Sbjct: 348  LGRRRPDDKDHVANKRVRLVNDLLAQLFRTVMKQFLQELKNQLEK-YYARGKIPHLQTIV 406

Query: 433  DASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKV 492
               I+T  + +A +TG W          +G+   L R N L TL  LRR    +  T   
Sbjct: 407  RPDIITERVKQALATGNW------VGGKTGVSQILDRTNYLSTLSYLRRVVSSLSRTQPH 460

Query: 493  GDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFE-QLFNSGMEKLAD 551
             +AR  HP+ WG++C + TP+G+N GLVKNL +   V+  + E   E  L+N G+  + +
Sbjct: 461  FEARDLHPTQWGRLCAVETPEGQNVGLVKNLALLAEVTMGVDESSVEGLLYNLGVVPVLE 520

Query: 552  DASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFM 611
                 + G  +V+++G  IGV  +    V  +R  RR+ ++  +V +    L + + +  
Sbjct: 521  ARRNGVAGA-EVYLNGRLIGVHPEPEELVKNIRTMRRQGKVHDEVNVAL--LGNSIYVNC 577

Query: 612  DAGRILRPLLVVENMGKIK-------SLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWG 664
            D GRI RPLLVVEN GK+K        L     T+  L+  G+IE +  +EEE+   A  
Sbjct: 578  DGGRIRRPLLVVEN-GKLKLTREHVQKLVAGELTWNDLIKMGVIEYLDADEEENAHIAVD 636

Query: 665  IKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFP 724
             +  L          +TH E+  S +LG    IIP+  H+ + R  Y++   + Q++G P
Sbjct: 637  PQEDLAG--------YTHMEIIPSSILGAIASIIPYLEHNQSPRNQYEA-AMAKQSLGLP 687

Query: 725  TTNPSIRVDTLSHQLFYPQRPLFRTMISDCLG---KPGYGHNHILPRPELYNGQNAIVAV 781
              N   ++D+  H L+YP+RP+  T   + +G   KP               GQNA+VA+
Sbjct: 688  QANIMYKLDSRGHMLYYPERPIVTTRGLELIGYSRKPA--------------GQNAVVAL 733

Query: 782  NVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSK 841
              + GYN ED+++MN++S+ERG  RS   R+Y+ E      Q      +D +      ++
Sbjct: 734  LTYTGYNIEDAIIMNKSSVERGFMRSNFYRTYETE-----EQKYPGGEEDRIEVPDPSAR 788

Query: 842  IGR----VDSLDDDGFPFIGANLQSGDIVIGKYA--------------DSGADHSIKLKH 883
              R       LD+DG       +  G+++IGK A                  D SI ++ 
Sbjct: 789  GYRGPEAYGHLDEDGIAPPEVYVSGGEVIIGKTAPPRFYMTLETEKILKERRDASIPVRR 848

Query: 884  TERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTI 943
             E+G+V +VV++ + +G     V LR++R P LGDKF+S HGQKGV+G L  QE+ PFT 
Sbjct: 849  GEKGIVDRVVITESPEGNKLVKVRLRELRVPELGDKFASRHGQKGVIGMLLRQEDMPFTE 908

Query: 944  QGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITE 1003
             GIVPDI++NPHA PSR T GQLLE+  GK  A +G+ I       ATPF       + E
Sbjct: 909  DGIVPDIIVNPHAMPSRMTVGQLLESIAGKAGAMVGRLID------ATPFEGVPESELRE 962

Query: 1004 QLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQ 1063
             L + G+   G E +Y G TGE + + IFIG  +YQ+L HM  DK+  R+ GPV  LTRQ
Sbjct: 963  LLMKLGYRWDGKEVMYSGITGEKLVADIFIGIVYYQKLHHMVADKIHARSRGPVQILTRQ 1022

Query: 1064 PVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVV 1123
            P   R R GG++ GEMERD LIAHGA+A L+ER+   SD Y M++C  C   A +     
Sbjct: 1023 PTEGRSREGGLRLGEMERDVLIAHGASALLYERMVESSDKYVMYVCELCGLPAYL----- 1077

Query: 1124 GGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFD 1169
                K   P C I        K  VPY  KLL QEL S+GI  K +
Sbjct: 1078 --DAKTNRPKCPIHGETGQFAKVVVPYAFKLLLQELISLGIYPKLE 1121


>gi|126132998|ref|XP_001383024.1| DNA-directed RNA polymerase III [Scheffersomyces stipitis CBS 6054]
 gi|126094849|gb|ABN64995.1| DNA-directed RNA polymerase III [Scheffersomyces stipitis CBS 6054]
          Length = 1155

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 378/1190 (31%), Positives = 582/1190 (48%), Gaps = 146/1190 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++S+N F+   L+K   +    +V    DP    E   +Y  +R G  
Sbjct: 47   AFLKVKGLVKQHLDSFNYFVDVDLKKIIRA--NELVLSDVDP----EFYLKYLDIRVGHK 100

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
            +   P      G  E  + P   RL+++TYS+ + V V+   YT+          GR+  
Sbjct: 101  SSSAP------GTKEVILPPHECRLRDLTYSAPIYVDVE---YTR----------GRKII 141

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVF 205
            + K+        + IGR+PVM++S+ C + G+         +C  D GGYF++ G EKV 
Sbjct: 142  MHKD--------LEIGRMPVMLRSNKCILDGINDKQMAKFDECPLDPGGYFVVNGTEKVI 193

Query: 206  VAQEQICLKRLWVS--NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKV-LSVYFL 262
            + QEQ+   R+ V      G   A  + +   R        SK   I   +K+ L    +
Sbjct: 194  LVQEQLSKNRIIVEADEKKGIVQASVTSSTHER-------KSKTYVITKNDKIYLKHNSI 246

Query: 263  STEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALK 322
            S +IPI I+  A G++SD EI+ L+   C        LF    +   K + F + + AL 
Sbjct: 247  SEDIPIVIVLKAAGITSDLEILQLV---CGSDPQYQDLFVVNFEEAAKLEVFTQ-QQALN 302

Query: 323  YVDKLIK------GTTFPPGESTEECMNTYLFPSLHGT----KQKARFLGYMVKCLLQAY 372
            YV K +K             +   E + T +   +       ++KA ++  M + ++   
Sbjct: 303  YVGKRVKTIRRAGAAKLSVLQEGIEAIATTVIAHITVADLQFREKALYIATMARRVVMTM 362

Query: 373  SGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDRTVRPI 428
               +  D+RD   NKRLELAG+L+    E   K   +  +  + K L++          +
Sbjct: 363  HNPKMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNSDFKANIDKILKKPSRTSEFDALL 422

Query: 429  EYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQY 488
               + ++ +T GL+RA STG WS    + ER +G+   L R + +  L  + R   Q + 
Sbjct: 423  SINIHSNNITMGLNRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALGMMTRISSQFEK 481

Query: 489  TGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGME 547
            + KV   R   PS +G +C   TP+GE CGLVKNL +   ++T   E PI +  +  G E
Sbjct: 482  SRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEAPIRKLCYVLGCE 541

Query: 548  KL--ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQS 605
             +   D A+    G F ++++G  IG  +    FV++ RR RR  ++   V I  +  Q+
Sbjct: 542  NILGIDSATLHSQGNFGIYLNGTLIGTSRFPSKFVTDFRRLRRTGKISEFVSIYTNTHQT 601

Query: 606  EVRIFMDAGRILRPLLVVEN---MGKIK---SLEGKNYTFQALLDHGIIELVGTEEEEDC 659
             V I  D GRI RPL++V+N   M K +    L    + F   L HG++E +   EE D 
Sbjct: 602  AVHIATDGGRICRPLIIVKNNEPMVKAEHLLKLRQGEWAFDDFLSHGLVEYLDVNEENDS 661

Query: 660  CTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQ 719
              A       KD++  +P+  TH E++   +LG   G+IP+ +H+ + R  YQ      Q
Sbjct: 662  LIAL----YEKDLDPSQPV--THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQC-AMGKQ 714

Query: 720  AIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIV 779
            AIG    N   R+DTL + + YPQ+P+ +T   +           ++   +L  GQNA V
Sbjct: 715  AIGAIAYNQFRRIDTLLYFMVYPQQPMVKTKTIE-----------LIDYDKLPAGQNATV 763

Query: 780  AVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKR--RSSDDMVNFGK 837
            AV  + GY+ ED+LV+N++S++RG  R + +R          +Q+KR    + D+V+  +
Sbjct: 764  AVMSYSGYDIEDALVLNKSSIDRGFGRCQVVR-------KNTIQLKRYPNHTKDIVSGMR 816

Query: 838  IQS---KIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTER-------- 886
            +      I    +L  DG   IGA +++G +   K+  + A  S+ L H E+        
Sbjct: 817  VDEDGEPIFPHKALGPDGLGEIGARVENGQVYANKFVPTNAGESV-LGHNEQMAGAESHR 875

Query: 887  -----------GMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLES 935
                         V +V++S +D+ +    V LRQ R P LGDKFSS HGQKGV G +  
Sbjct: 876  EAAAYYKGPEPSYVDQVMMSVSDNDQALIKVLLRQTRRPELGDKFSSRHGQKGVCGIIVQ 935

Query: 936  QENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFAT 995
            QE+ PF   GI PDI++NPH FPSR T G+++E   GK       G+ +G   Y T F  
Sbjct: 936  QEDLPFNDDGISPDIIMNPHGFPSRMTVGKMIELISGKA------GVLNGSLEYGTCFGG 989

Query: 996  PSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTG 1055
              ++ +++ L   GFS  G + LY G TGE +++ IF GP +YQ+L HM  DK+  R  G
Sbjct: 990  SKLEDMSKILVEKGFSYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARG 1049

Query: 1056 PVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNV 1115
            P   LTRQP   R R GG++ GEMERDC+IA+GA+  L ERL   SD++++ +C KC   
Sbjct: 1050 PRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCNKC--- 1106

Query: 1116 ANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
                      G      +C  C S + ++K  +PY AKLL QEL SM I 
Sbjct: 1107 ----------GLMGYNSWCTTCKSFEHVIKMTIPYAAKLLFQELLSMNIA 1146


>gi|213402277|ref|XP_002171911.1| DNA-directed RNA polymerase III subunit RPC2 [Schizosaccharomyces
            japonicus yFS275]
 gi|211999958|gb|EEB05618.1| DNA-directed RNA polymerase III subunit RPC2 [Schizosaccharomyces
            japonicus yFS275]
          Length = 1160

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 389/1232 (31%), Positives = 581/1232 (47%), Gaps = 173/1232 (14%)

Query: 8    FTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETI- 66
             TDP    +   E L  F +          GLV   ++SYN F+   L+K  ++  +   
Sbjct: 35   LTDPVPTIEDKWELLPAFLKVK--------GLVKQHLDSYNYFVDVDLKKIVEANQKITS 86

Query: 67   -VEPGYDPSKKGEGEWRYASMRFGQ-VTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSR 124
             VEP +          +Y  +R GQ V  D  +        +H + P   RL+++TY + 
Sbjct: 87   DVEPWF--------YLKYLDIRVGQPVRTDLDAI-------QHSISPHECRLRDLTYGAN 131

Query: 125  MKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVE 184
            + V ++   YT+ R           Q +++        N+ IGR+PVM++S+ C + G  
Sbjct: 132  IFVDIE---YTRGR-----------QVVRRR-------NVPIGRMPVMLRSNKCVLYGKS 170

Query: 185  K------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV----SNSMGWTVAYKSENKR 234
            +       +C  D GGYF++KG EKV + QEQ+   R+ V    S  M W  +  S    
Sbjct: 171  EKELAALNECPLDPGGYFVVKGTEKVILVQEQLSKNRIIVEAEPSKEM-WQASVTSSTHE 229

Query: 235  NRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDC 294
             +    +V        K G   +    ++ +IPI I   A+G+ SD+EI  L+     + 
Sbjct: 230  RKSKTYVV-------TKNGRLYMKHNSVNEDIPIVIALKAMGLQSDREIFELV--AGSEA 280

Query: 295  SILNILFASIHDADNKCDEFRKGRNALKYVDKLIK------GTTFPPGESTEECMNTYLF 348
            +  ++   S+ +A  K + +     AL Y+   +K          PP E   E +   + 
Sbjct: 281  NYQDLFAPSVEEA-AKLNVYTT-EQALNYIGSHVKVNRRAGAARLPPHEEALEVLAAVVL 338

Query: 349  PSLHGT----KQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL-------- 396
              +       + KA ++  M + +L A     + D+RD   NKRLELAG+LL        
Sbjct: 339  AHISVVNLDFRPKAVYVAMMARRVLMAMVDPSQVDDRDYVGNKRLELAGQLLALLFEDLF 398

Query: 397  ---ERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHP 453
                 +LK++I    K+  +  + D Y        +  +    +T G+ RA STG WS  
Sbjct: 399  KKFNSDLKLNIDKVLKKPNRTQEFDAYN-------QLSMHGDHITQGMVRALSTGNWSLK 451

Query: 454  FKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPD 513
              + ER +G+   L R + +  L  + R   Q + T KV   R   PS +G +C   TP+
Sbjct: 452  RFKMER-AGVTHVLSRLSFISALGMMTRITSQFEKTRKVSGPRSLQPSQFGMLCTSDTPE 510

Query: 514  GENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKLADDASYSLGGK--FKVFVDGDWI 570
            GE CGLVKNL +   ++T   E P+    +  G+E +       +  +  + V+++G  +
Sbjct: 511  GEACGLVKNLALMTHITTDEEEGPLIRLAYAFGVEDVHTVTGREILAQDSYLVYINGSIL 570

Query: 571  GVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN----- 625
            G+ +    FVS  RR RR   +   V I  +E Q  V I  D GRI RPL+VVEN     
Sbjct: 571  GITRYPSRFVSCFRRLRRSGRISPFVGIFINEHQRAVFISADGGRICRPLIVVENGLPRV 630

Query: 626  -MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCE 684
                I+ L+     F+  L  G +E V   EE D   A   K +  D         TH E
Sbjct: 631  TNEHIRKLKNGEMVFEDFLKAGYVEYVDVNEENDSLIAVYEKDIAPDT--------THLE 682

Query: 685  LDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQR 744
            ++   +LG   G+IP+ +H+ + R  YQ      QAIG    N   R+DTL + + YPQ+
Sbjct: 683  IEPFTILGAVAGVIPYPHHNQSPRNTYQC-AMGKQAIGAIGYNQLQRIDTLLYLMVYPQQ 741

Query: 745  PLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGM 804
            P+ +T   + +G             +L  GQNA+VA+  + GY+ ED+LV+N+ASL+RG 
Sbjct: 742  PMVKTKTIELIG-----------YDKLPAGQNAMVAIMSYSGYDIEDALVLNKASLDRGF 790

Query: 805  FRSEHIRSYKAEVDNKEMQVKRRSSD---DMVNFGKIQSKIGRVDSLDDDGFPFIGANLQ 861
             R +    + A +         R  D   D  N GK+   I +   L+DDG   +G  +Q
Sbjct: 791  GRCQVFHKHSAIIRKYPNGTHDRIGDPQRDPEN-GKV---IWKHKILEDDGLAGVGCQVQ 846

Query: 862  SGDIVIGKYADSGA-DHSIKL-----------------KHTERGMVQKVVLSSNDDGKNF 903
            SG + I K   + A D++I L                 K  E   + KV+L+++D  +  
Sbjct: 847  SGQVYINKQTPTNALDNTIALGQPQTTESGYRATPMTYKAPEPAYIDKVMLTNSDADQTL 906

Query: 904  SVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTP 963
              V  RQ R P LGDKFSS HGQKGV G +  QE+ PF   GI PDI++NPH FPSR T 
Sbjct: 907  VKVLTRQTRRPELGDKFSSRHGQKGVCGVIIQQEDMPFNDIGICPDIIMNPHGFPSRMTV 966

Query: 964  GQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRT 1023
            G+++E   GK       G+  G   Y T F    V+ ++  L   G++  G + L  G T
Sbjct: 967  GKMIELLSGKA------GVLRGTLEYGTCFGGSRVEDMSRILVEHGYNYSGKDMLTSGIT 1020

Query: 1024 GEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDC 1083
            GE + + IF GP +YQ+L HM  DK+  R  GP   LTRQP   R R GG++ GEMERDC
Sbjct: 1021 GEQLEAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDC 1080

Query: 1084 LIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDI 1143
            LIA+GA+  L ERL   SD++++ +C  C            G    +G +C  C+S   +
Sbjct: 1081 LIAYGASQLLLERLMLSSDAFEVDVCENC------------GLLGYKG-WCNSCESSKHV 1127

Query: 1144 VKANVPYGAKLLCQELFSMGIT--LKFDTEFC 1173
            VK  +PY AKLL QEL SM I   L  + EF 
Sbjct: 1128 VKMTIPYAAKLLFQELMSMNIIPRLALEDEFA 1159


>gi|379005506|ref|YP_005261178.1| DNA-directed RNA polymerase subunit B [Pyrobaculum oguniense TE7]
 gi|375160959|gb|AFA40571.1| DNA-directed RNA polymerase subunit B [Pyrobaculum oguniense TE7]
          Length = 1127

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 377/1183 (31%), Positives = 578/1183 (48%), Gaps = 138/1183 (11%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
            F  + GL SHQI S+N+F+   L +  + F            K  + E +   +   ++ 
Sbjct: 31   FIKDKGLASHQIKSFNDFLDKRLPRIVEDF------------KVVDTEIKGLKLVLEKIE 78

Query: 93   LDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYI 152
            +  P     +G  E  ++P  ARL+N TYS+ + +                       Y+
Sbjct: 79   VGWPRIKESDGS-ESLIYPMEARLRNATYSAPLYLTAVL-------------------YV 118

Query: 153  QKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCDF------DHGGYFIIKGAEKVFV 206
              E  + ET    IG +P+MVKS  C +  +   +         D GGYFII G+E+V +
Sbjct: 119  DDEPYATET--FYIGELPIMVKSKRCNLSRLRPSEYPKRFEDPQDFGGYFIINGSERVII 176

Query: 207  AQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEI 266
            +QE +   R         +V + ++     +  R       E  K G    ++  +  +I
Sbjct: 177  SQEDLVADRPIYDKGDKPSVKFLAKTISTGIGYR--STLTVELNKDGVIYATLSAIPVKI 234

Query: 267  PIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVD- 325
            P  I   ALG+ +D+++V  +    +D  I   L  S+  A N+    R+  +AL Y+  
Sbjct: 235  PFPIYMKALGLETDEDVVKAV---SDDPDIQKELLPSLVVA-NQIAITRE--DALDYIGG 288

Query: 326  KLIKGTTFPPG-ESTEECMNTYLFPSLHGTKQ-----------KARFLGYMVKCLLQAYS 373
            K+  G   P   E   + ++ Y  P L  T Q           KA  LG +VK L++   
Sbjct: 289  KVAVGQPRPVRVERALQLLDRYFLPHLGTTVQDEKKQQEIRLKKALMLGQIVKGLVELQL 348

Query: 374  GRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLD 433
            GRRK D++D   NKR+ L G+L+ +  +       + +   L++  Y    +  ++  + 
Sbjct: 349  GRRKPDDKDHVANKRVRLVGDLMTQLFRTVFKQLLQELRSQLEK-YYARGRIPHLQTIVR 407

Query: 434  ASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVG 493
              I+T  + +A +TG W          +G+   L R N L TL  LRR    +  T    
Sbjct: 408  PDIITERVRQALATGNW------VGGKTGVSQILDRTNYLSTLSYLRRVVSSLSRTQPHF 461

Query: 494  DARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQ-LFNSGMEKLADD 552
            +AR  HP+ WG++C + TP+G+N GLVKNL +   ++T + E   EQ L   G+  +   
Sbjct: 462  EARDLHPTQWGRLCAVETPEGQNVGLVKNLALLAEITTGVDENEVEQMLLQQGVVPILKA 521

Query: 553  ASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMD 612
                + G  +V+++G  IG+  +    V  +R  RR+ ++  ++ I    L   V +  D
Sbjct: 522  REEGIRGA-EVYLNGRLIGIHPEPEELVKTVRSLRRQGKISDEINIAY--LNGVVYVNSD 578

Query: 613  AGRILRPLLVVENMGKIK-------SLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGI 665
             GRI RPLLVVE+ GK+K        ++    T+  LL  G++E +  +EEE+   A   
Sbjct: 579  GGRIRRPLLVVED-GKLKLTKDIVERVKRGELTWDDLLKMGVVEYLDADEEENAHIAVDP 637

Query: 666  KYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPT 725
            +  L +        +TH E+  S +LG    IIP+  H+ + R  Y++   + Q++G P 
Sbjct: 638  EGDLSN--------YTHVEIIPSSILGAIASIIPYLEHNQSPRNQYEA-AMAKQSLGLPQ 688

Query: 726  TNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHL 785
            +N   ++D+  H L+YP+RP+  T   + +G   Y       RP    GQNA+VA+  + 
Sbjct: 689  SNFLYKLDSRGHMLYYPERPIVTTRGLELVG---YSK-----RP---AGQNAVVALLTYT 737

Query: 786  GYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGR- 844
            GYN ED++++N+AS+ERGMFRS   R+Y+ E      Q      +D +       K  R 
Sbjct: 738  GYNIEDAVILNKASVERGMFRSVFYRTYETE-----EQRYPGGEEDKIEIPDSSVKGYRG 792

Query: 845  ---VDSLDDDGFPFIGANLQSGDIVIGKYA--------------DSGADHSIKLKHTERG 887
                  LD+DG       + S +++IGK +                  D S+ ++  E+G
Sbjct: 793  PEAYSHLDEDGIAPPEVYVSSSEVLIGKTSPPRFYTTLETERILKERRDASVAVRRGEKG 852

Query: 888  MVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIV 947
            +V +V+++ + +G     V LR++R P LGDKF+S HGQKGV+G L  QE+ PFT +GIV
Sbjct: 853  IVDRVIITESPEGNKLVKVRLRELRIPELGDKFASRHGQKGVVGMLLRQEDMPFTEEGIV 912

Query: 948  PDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHR 1007
            PDI++NPHA PSR T  QLLE+  GK  AA G  +       ATPF     + + + L +
Sbjct: 913  PDIIVNPHALPSRMTVAQLLESMAGKVGAATGNLVD------ATPFEGVKEEDLRKLLLK 966

Query: 1008 AGFSKW-GTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVA 1066
             G+ KW G E +Y G TGE + + IFIG  +YQ+L HM  DK+  R  GPV  LTRQP  
Sbjct: 967  LGY-KWDGKEVMYSGITGERLVADIFIGIVYYQKLHHMVADKIHARARGPVQILTRQPTE 1025

Query: 1067 DRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGG 1126
             R R GG++ GEMERD LIAHGA+A L+ERL   SD Y M++C  C   A +        
Sbjct: 1026 GRSREGGLRLGEMERDVLIAHGASALLYERLVESSDKYTMYVCELCGLPAYL-------D 1078

Query: 1127 RKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFD 1169
             K   P C I        K  VPY  KLL QEL ++GI  K +
Sbjct: 1079 AKSNKPKCPIHGDTGQFAKVTVPYAFKLLLQELIALGIYPKLE 1121


>gi|366997769|ref|XP_003683621.1| hypothetical protein TPHA_0A01020 [Tetrapisispora phaffii CBS 4417]
 gi|357521916|emb|CCE61187.1| hypothetical protein TPHA_0A01020 [Tetrapisispora phaffii CBS 4417]
          Length = 1142

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 378/1198 (31%), Positives = 587/1198 (48%), Gaps = 165/1198 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++S+N F+   L+K  ++    ++    DP    E   +Y  +R G+ 
Sbjct: 47   AFLKVKGLVKQHLDSFNYFVDKDLKKIIEA--NQVILSDVDP----EFYLKYVDIRIGE- 99

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
                       G  E  + P   RL++MTYS+ + V ++   YT+          GR   
Sbjct: 100  --------KSTGSKEKLVPPHECRLRDMTYSAPIYVDIE---YTR----------GRNII 138

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVF 205
            + K+V         IGR+P+M++S+ C + G ++       +C  D GGYFI+ G EKV 
Sbjct: 139  MHKDVE--------IGRMPIMLRSNKCILNGADQKVMAKLNECPLDPGGYFIVNGTEKVI 190

Query: 206  VAQEQICLKRLWVSNSMGWTVAYKS------ENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            + QEQ+   R+ V      ++   S      E K    +V           K G+  L  
Sbjct: 191  LVQEQLSKNRIIVEADEKKSIVQASVTSSTHERKSKTYVV----------TKNGKIYLKH 240

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
              ++ E+PI I+  A G+ SD EI+ L+   C + S    +FA   +   K +     + 
Sbjct: 241  NSIAEEVPIAIILKACGIVSDLEIMQLV---CGNDSSYQDIFAINLEEAVKLN-ISTQQQ 296

Query: 320  ALKYVDKLIKG------TTFPPG-ESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAY 372
            AL+Y+   +K       +    G E+    +  +L       ++KA ++  M + ++ A 
Sbjct: 297  ALEYIGSKVKTIRRQKLSILQEGIEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAI 356

Query: 373  SGRRKCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKRMAKALQRDLYG 421
               +  D+RD   NKRLELAG+L+             + K  I    K+  +A++ D   
Sbjct: 357  ENPKMVDDRDYVGNKRLELAGQLISLLFEDLFKKFNSDFKASIDKVLKKPNRAMEYDAL- 415

Query: 422  DRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRR 481
                  +   + ++ +T+GL+RA STG WS    + ER +G+   L R + +  L  + R
Sbjct: 416  ------LSINVHSNNITSGLNRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALGMMTR 468

Query: 482  TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQ 540
               Q + + KV   R   PS +G +C   TP+GE CGLVKNL +   ++T   E PI + 
Sbjct: 469  ISSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEDPIKKL 528

Query: 541  LFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKR 600
             +  G+E +    S SL   + V ++G  IG  +  L+FVS+ R+ RR   +   V I  
Sbjct: 529  CYMLGVEDITLIDSASLHLNYGVHLNGTLIGTTRFPLNFVSQFRQLRRTGRVSEFVSIYT 588

Query: 601  DELQSEVRIFMDAGRILRPLLVVENMGK--IKS------LEGKNYTFQALLDHGIIELVG 652
            +  Q  V I  D GRI RPL++V N GK  +K+      LEGK   F   L  G++E + 
Sbjct: 589  NSHQQAVHIATDGGRICRPLIIVSN-GKSHVKAEHLKELLEGK-LDFDDFLKLGLVEYLD 646

Query: 653  TEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 712
              EE DC  A       KD+ ++     TH E++   +LG   G+IP+ +H+ + R  YQ
Sbjct: 647  VNEENDCFIAL----YEKDLSNRS----THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQ 698

Query: 713  SQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELY 772
                  QAIG    N   R+DTL + + YPQ+P+ +T   +           ++   +L 
Sbjct: 699  CAM-GKQAIGAIGYNQFKRIDTLLYLMIYPQQPMVKTKTIE-----------LIDYDKLP 746

Query: 773  NGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRR---SS 829
             GQNA VAV  + GY+ ED+LV+N+AS++RG  R E  R        K   V +R    +
Sbjct: 747  AGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCETRR--------KTTTVLKRYPNHT 798

Query: 830  DDMVNFGKI---QSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSI----KLK 882
             D++   ++    + I + ++L  DG   +G  + SG I I K   + A  S+    + +
Sbjct: 799  QDIIGGMRVDENNNPIWQHEALGPDGLGEVGVKVNSGQIYINKSVPTNASDSVLTSTQSQ 858

Query: 883  HTERGMV---------QKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
            + E  +V          +V++S +++ +    V LRQ R P LGDKFSS HGQKGV G +
Sbjct: 859  YKETPVVYRSPVPSHIDQVMMSVSENDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGII 918

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
             + E+ PF  +GI PDI++NPH FPSR T G+++E   GK       G+ +G   Y T F
Sbjct: 919  VNHEDMPFNDEGISPDIIMNPHGFPSRMTVGKMIELVSGKA------GVLNGSLEYGTCF 972

Query: 994  ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
                ++ +++ L   G++  G + LY G TGE +++ IF GP +YQ+L HM  DK+  R 
Sbjct: 973  GGSKLEDMSQILVENGYNYSGKDMLYSGVTGECLQAYIFFGPIYYQKLKHMVLDKMHARA 1032

Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
             GP   LTRQP   R R GG++ GEMERDC+IA+GA+  L ERL   SD++++ +C KC 
Sbjct: 1033 RGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCHKC- 1091

Query: 1114 NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                        G      +C  C S + IVK  +PY AKLL QEL +M I  +   E
Sbjct: 1092 ------------GLMGYSGWCTTCKSAEFIVKMTIPYAAKLLFQELLAMNIAPRLRLE 1137


>gi|70794970|gb|AAZ08459.1| RNA polymerase II second largest subunit [Astilbe sp. Yoshikawa s.n.]
          Length = 951

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 343/992 (34%), Positives = 526/992 (53%), Gaps = 104/992 (10%)

Query: 109  MFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGR 168
            +FP+ ARL+N+TYS+ + V V       KRV     K G +   ++   + + T + IG+
Sbjct: 5    LFPKAARLRNLTYSAPLYVDVS------KRV----IKKGHDG--EEVTETQDFTKVFIGK 52

Query: 169  IPVMVKSDLCWM------KGVEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV---- 218
            +P+M++S  C +         E G+C +D GGYFII G+EKV +AQE++    ++V    
Sbjct: 53   VPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 112

Query: 219  -SNSMGWTVAYKS-ENKRNR----LIVRLVDMSKFEDIKGGEKV-LSVYFLSTEIPIWIL 271
              N   +    +S    +NR    + VR++  +  +    G+ +  ++ ++  +IPI I+
Sbjct: 113  QPNKYAYVAEVRSMAESQNRPPSTMFVRMLARTSAKGGSSGQYIRATLPYIRVDIPIIIV 172

Query: 272  FFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGT 331
            F ALG  +DK+I+  I +   D  ++ +L  S+ +A       +  + AL Y+ K  +G+
Sbjct: 173  FRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAF----VIQNQQVALDYIGK--RGS 226

Query: 332  TFPPGESTE-------ECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRRKCDN 380
            T   G + E       E +   + P +    +   +KA + GY++  LL    GRR  D+
Sbjct: 227  TV--GVTREKRIKYAREILQKEMLPHVGMAEYCETKKAYYFGYIIHRLLLVALGRRAEDD 284

Query: 381  RDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNG 440
            RD + NKRL+LAG LL    ++      + +   +Q+ +   + V  +++ + A  +T+G
Sbjct: 285  RDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVN-LQFAIKAKTITSG 343

Query: 441  LSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHP 500
            L  + +TG W        R +G+   L R     TL  LRR    +   GK+   R  H 
Sbjct: 344  LKYSLATGNWGQANAAGTR-AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHN 402

Query: 501  SHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGG 559
            S WG +C   TP+G+ CGLVKNL +   ++  S   PI E L   G E   + +   +  
Sbjct: 403  SQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPE 462

Query: 560  KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRP 619
              K+FV+G W+G+ +D    V  LRR RRR ++ T+V + RD    E+RI+ D GR  RP
Sbjct: 463  ATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRP 522

Query: 620  LLVVENM------GKIKSLEGKNYT----FQALLDHGIIELVGTEEEEDCCTAWGIKYLL 669
            L +VE          I++L+ +       +  L+  G IE V TEEEE    +  I  L+
Sbjct: 523  LFIVEKQRLLIKKKDIQALQQRETPEDGGWHDLVAKGFIEYVDTEEEETTMISMTINDLV 582

Query: 670  K---DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTT 726
                + E+     +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   T
Sbjct: 583  SARLNPEEAYSEYYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGIYVT 641

Query: 727  NPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLG 786
            N   R+DTL++ L+YPQ+PL  T   + L      H   LP      G NAIVA+  + G
Sbjct: 642  NYQFRMDTLAYVLYYPQKPLVTTRAMEHL------HFRQLP-----AGINAIVAIACYSG 690

Query: 787  YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVK----RRSSDDMVNFGKIQSKI 842
            YNQEDS++MN++S++RG FRS   RSY+ E       VK    R + +D +N      + 
Sbjct: 691  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPNRNDTMNM-----RH 745

Query: 843  GRVDSLDDDGFPFIGANLQSGDIVIGKYAD-------------SGADHSIKLKHTERGMV 889
            G  D LDDDG    G  +   D++IGK +              +  DHS  L+H+E GMV
Sbjct: 746  GSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAQDESQGQASRYTKRDHSTSLRHSETGMV 805

Query: 890  QKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPD 949
             +V+L++N DG  F  V +R VR P +GDKFSS HGQKG +G   +QE+ P+T++GI PD
Sbjct: 806  DQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPD 865

Query: 950  IVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAG 1009
            I++NPHA PSR T GQL+E  +GK  A +GK      +  ATPF   +VD I++ LH+ G
Sbjct: 866  IIVNPHAIPSRMTIGQLIECIMGKVAAHMGK------EGDATPFTDVTVDNISKALHKCG 919

Query: 1010 FSKWGTERLYDGRTGEMVRSLIFIGPTFYQRL 1041
            +   G E +Y+G TG  + ++IF+GPT+YQRL
Sbjct: 920  YQMRGFETMYNGHTGRRLTAMIFLGPTYYQRL 951


>gi|190347676|gb|EDK39998.2| DNA-directed RNA polymerase III 130 kDa polypeptide [Meyerozyma
            guilliermondii ATCC 6260]
          Length = 1156

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 378/1210 (31%), Positives = 583/1210 (48%), Gaps = 167/1210 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++S+N F+   L+K   +    +V    DP    +   +Y  +R G  
Sbjct: 45   AFLKVKGLVKQHLDSFNFFVDVDLKKIVQA--NELVLSDVDP----DFYLKYLDIRVGHK 98

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
            +   P      G  E  + P   RL+++TYS+ + V V+   YT+          GR+  
Sbjct: 99   STSSP------GTKEVILPPHECRLRDLTYSAPIYVDVE---YTR----------GRKII 139

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVF 205
            + K+        + IGR+P+M+KS+ C + G+         +C  D GGYFI+ G EKV 
Sbjct: 140  MHKD--------LEIGRMPIMLKSNKCILDGINDHQMAKLDECPIDPGGYFIVNGTEKVI 191

Query: 206  VAQEQICLKRLWVS--NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKV-LSVYFL 262
            + QEQ+   R+ V      G   A  + +   R        SK   I   EK+ L    +
Sbjct: 192  LIQEQLSKNRIIVEADEKKGIVQASVTSSTHER-------KSKTYVITKNEKIYLKHNSI 244

Query: 263  STEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALK 322
              ++PI I+  A G++SD EI+ L+   C        LFA   +   + + F + + AL 
Sbjct: 245  GEDVPIVIILKAAGITSDLEILQLV---CGSNPQYQDLFAVNFEEAARLEVFTQ-QQALN 300

Query: 323  YVDKLIKGTTFPPG--------ESTEECMNTYLFPSLHGT------KQKARFLGYMVKCL 368
            YV K +K T    G        E  E    T +    H T      ++KA ++  M + +
Sbjct: 301  YVGKRVK-TVRRAGAPKLSQLQEGIEAIATTII---AHITVDDLQFREKALYIAMMARRV 356

Query: 369  LQAYSGRRKCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKRMAKALQR 417
            L      +  D+RD   NKRLELAG+L+             + K +I    K+ ++A + 
Sbjct: 357  LMTMHNPKMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNSDFKANIDKILKKPSRASEF 416

Query: 418  DLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLV 477
            D         +   + ++ +T G++RA STG WS    + ER +G+   L R + +  L 
Sbjct: 417  DAL-------LSINIHSNNITMGMNRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALG 468

Query: 478  DLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLVSTSILEP 536
             + R   Q + + KV   R   PS +G +C   TP+GE CGLVKNL + T + +    EP
Sbjct: 469  MMTRISSQFEKSRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEEP 528

Query: 537  IFEQLFNSGMEKL--ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPT 594
            I    F  G E +   D A+    G F ++++G  IG  +    FV   R  RR  ++  
Sbjct: 529  IRSVCFALGCEDILEVDSATLHADGNFGIYLNGTIIGTTRFPAQFVGNFRALRRSGKVSP 588

Query: 595  QVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGI 647
             + I  +  Q+ V+I  D GR+ RPL++V++  K       +K L    + F+  + HG+
Sbjct: 589  FISIHTNTHQNAVQIATDGGRVCRPLIIVDSKNKANVKAVHLKKLMAGEWVFEDFIKHGL 648

Query: 648  IELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHAR 707
            +E +   EE D   A       +D+E  + I  TH E++   +LG   G+IP+ +H+ + 
Sbjct: 649  VEYLDVNEENDSFIAL----YERDLEANQNI--THLEIEPFTVLGAVAGLIPYPHHNQSP 702

Query: 708  RVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILP 767
            R  YQ      QAIG    N   R+DTL + + YPQ+P+ +T   +           ++ 
Sbjct: 703  RNTYQC-AMGKQAIGAIAYNQFRRIDTLLYLMVYPQQPMVKTKTIE-----------LID 750

Query: 768  RPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRR 827
              +L  GQNA VAV  + GY+ ED+LV+N+AS++RG  R + +R     +       K  
Sbjct: 751  YDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCQVLRKNTVNLKRYPNHTK-- 808

Query: 828  SSDDMVNFGKIQSK---IGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSI----- 879
               D+V+  ++  +   I    SL  DG   +G  +++G + + K   + A  S+     
Sbjct: 809  ---DVVSGMRVDEQGEPIFPHASLGPDGLGEVGMKVENGQVYVNKCVPTNASESVLGANE 865

Query: 880  ---------------KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMH 924
                             +  E   + +V++S +D+ +    V LRQ R P LGDKFSS H
Sbjct: 866  PHHQQNVESHRETPAYYRGPEPSYIDQVMMSVSDNDQTLIKVLLRQTRRPELGDKFSSRH 925

Query: 925  GQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICS 984
            GQKGV G +  QE+ PF   GIVPDI++NPH FPSR T G+++E   GK       G+ +
Sbjct: 926  GQKGVCGIIVQQEDLPFNDDGIVPDIIMNPHGFPSRMTVGKMIELISGKA------GVLN 979

Query: 985  GLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHM 1044
            G   Y T F    ++ ++E L + GF+  G + LY G TGE +++ IF GP +YQ+L HM
Sbjct: 980  GSLEYGTCFGGSKLEDMSEILVKNGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHM 1039

Query: 1045 SEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSY 1104
              DK+  R  GP   LTRQP   R R GG++ GEMERDC+IA+GA+  L ERL   SD++
Sbjct: 1040 VLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMLSSDAF 1099

Query: 1105 QMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
            ++ +C  C             G      +C  C S ++++K  +PY AKLL QEL SM I
Sbjct: 1100 EVDVCNNC-------------GLMGYNSWCTSCKSSENVIKMTIPYAAKLLFQELLSMNI 1146

Query: 1165 T--LKFDTEF 1172
               LK D  F
Sbjct: 1147 APRLKLDDVF 1156


>gi|302348973|ref|YP_003816611.1| DNA-directed RNA polymerase subunit B [Acidilobus saccharovorans
            345-15]
 gi|302329385|gb|ADL19580.1| DNA-directed RNA polymerase subunit B [Acidilobus saccharovorans
            345-15]
          Length = 1179

 Score =  511 bits (1316), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 386/1199 (32%), Positives = 577/1199 (48%), Gaps = 140/1199 (11%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDP-SKKGEG---EWRYASMRF 88
            +  E GL    ++SYN F+   +Q+  DSFGE  + P Y   S++ E    E     +  
Sbjct: 21   YIRETGLARQHLDSYNAFVTERMQEIVDSFGE--IRPLYKQVSRRREAAPEEGPDIKIVL 78

Query: 89   GQVTLDKPSFFAGNGG-DEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
            G++ + +P     +G     D+ P  ARL+N TYS+ + ++++              + G
Sbjct: 79   GKIRIGEPQVKEADGNLRRKDVTPLEARLRNFTYSAPLFLQMKL------------VENG 126

Query: 148  REQYIQKEVLSDETTNIIIGRIPVMVKSDL------CWMKGVEKGDCDFDHGGYFIIKGA 201
             E Y      SDE   + +G  P+MVKS +       + + +E G+   D GGYFII G+
Sbjct: 127  TEVY------SDE---VKVGDFPIMVKSVIDPLSKASYRELLEAGEDPNDPGGYFIINGS 177

Query: 202  EKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYF 261
            E+V VAQE + + R+ V  S   T       K    I+ L      + +  G   +S+  
Sbjct: 178  ERVVVAQEDLAVNRIIVGVSTANTAKITHSAKTVSTILGLRRQVIVDRMSDGSLEVSMSR 237

Query: 262  LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNAL 321
            L+  IP  ++  ALG+  D EI   +     D  +   L  S           R   +AL
Sbjct: 238  LNYRIPFIVMMKALGLEKDAEIAAAV---SPDPDVQRELLPSFEKV---SAAIRTKEDAL 291

Query: 322  KYVDKLIKGTTFPPGE----STEECMNTYLFPSLHGTKQ----KARFLGYMVKCLLQAYS 373
            +++   I   T  P E      EE ++T   P +  T      KA FLG M   +LQ Y 
Sbjct: 292  EFLGNRI--ATGQPREIRIQRAEEFIDTQFLPHIGLTPADRLAKAYFLGEMANRVLQLYL 349

Query: 374  GRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLD 433
            G+R+ D++D   NKRL LAG+L+    +         +A  L+  +   R VR +   + 
Sbjct: 350  GKRQEDDKDHLANKRLRLAGDLIAEIFRDAFQQLATLIASELEEYISQHRKVRDLRSLVR 409

Query: 434  ASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVG 493
              I+T  +  A +TG W      T   +G+   L R N +  L  LRR    +       
Sbjct: 410  PDIITERVRAALATGNW------TGNRTGVSQALDRTNWMSLLSHLRRVISPLSRGESNF 463

Query: 494  DARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFNSGMEKLADDA 553
            +AR  H +HWG++C   TP+G NCGLVKNL +T  +S  + E   + +  S      DDA
Sbjct: 464  EARDLHGTHWGRLCPFETPEGINCGLVKNLAMTAYISVGVNEQHVKNILMSMDLIPLDDA 523

Query: 554  SYSLGG-------KF----KVFVDGDWIGVCKDSLSFVSELRRK----RRRKELPTQVEI 598
               +         K+    KVF++G  IG  +D     +ELRRK    RR   L  +V +
Sbjct: 524  IKEIASGEPEAIEKYTNMAKVFLNGKPIGYVQDG----AELRRKLIAMRRSGSLSYEVSV 579

Query: 599  KRDELQ--SEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGIIE 649
               E     EV I  D GR++RP++VVEN GK       ++ ++    +F  L+ +G+IE
Sbjct: 580  AYIEQGGIKEVYINTDEGRLMRPVIVVEN-GKPKLTKEMVEKVKRGEMSFWDLVRNGVIE 638

Query: 650  LVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRV 709
             +  +EEE+        Y+ +  E+  P + TH E+    +  +   I PF  H+ + R 
Sbjct: 639  FLDPDEEENA-------YVAESPEEVTP-EHTHLEMWTPGIFSVVTSITPFLEHNQSPRN 690

Query: 710  LYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRP 769
             YQ+   + QA+G    N   R+D+ ++ L YPQ+P+ +T     L + GY       RP
Sbjct: 691  TYQA-AMAKQALGLYALNYQYRMDSHAYLLHYPQKPIVQTR---SLEEIGYND-----RP 741

Query: 770  ELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSS 829
               +GQN IVA+  ++GYN ED+++MN+ S++ G+ R+   R Y    +     +K   +
Sbjct: 742  ---SGQNFIVAIMPYMGYNMEDAIIMNKTSVDYGLGRAHFFRVYTVMENTYAGGLKDTIT 798

Query: 830  DDMVNFGKIQSKIG--RVDSLDDDGFPFIGANLQSGDIVIGKYAD--------------- 872
               V   K+    G      L  DG       +  GD+++G+ +                
Sbjct: 799  ---VPSPKLYDHKGDQYYTKLGPDGIIEPEVEVDGGDVLVGRESPPRFLGEERVMSLGTL 855

Query: 873  SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGF 932
            +  D S++L++ E G+V  V+++   D      V +R +R P LGDKF+S HGQKGV+G 
Sbjct: 856  TKRDTSVQLRYGEHGVVDTVLITQTTDRNLLVKVKVRDLRIPELGDKFASRHGQKGVVGM 915

Query: 933  LESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATP 992
            L  + + P+T  GIVPDI+INPH  PSR T GQ+LE   GK  AA+      G     TP
Sbjct: 916  LYPKYDMPYTEDGIVPDIIINPHGIPSRMTVGQILELITGKA-AAMEARYVDG-----TP 969

Query: 993  FATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFR 1052
            F    VD     L + G+S  GTE +YDGRTG+++ + I IG  FYQRL HM  DK+  R
Sbjct: 970  FYKDDVDQYKIILIKHGYSPDGTEVMYDGRTGQLLETPISIGVVFYQRLYHMVADKMHAR 1029

Query: 1053 NTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKC 1112
             TG V  LTRQP   + R GG++FGEMERDCL+ HGA   L +R+   SD+Y M++C  C
Sbjct: 1030 ATGKVQLLTRQPTEGKARQGGLRFGEMERDCLVGHGATMLLRDRMLDGSDAYTMYVCTLC 1089

Query: 1113 KNVANVIQRVVGGGRKVRGPY-CRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
             +VA    R        +  Y C I     DI    VPY  KL  QE+ SMGI  + + 
Sbjct: 1090 GHVAWYNSR--------KNVYECPIHGENGDIKPVKVPYAFKLFLQEIMSMGIKPRIEV 1140


>gi|71013466|ref|XP_758593.1| hypothetical protein UM02446.1 [Ustilago maydis 521]
 gi|46098251|gb|EAK83484.1| hypothetical protein UM02446.1 [Ustilago maydis 521]
          Length = 1169

 Score =  511 bits (1315), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 365/1209 (30%), Positives = 575/1209 (47%), Gaps = 166/1209 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN F+ + L+    +  E I     DP            +++  +
Sbjct: 55   AFLQVKGLVKQHIDSYNYFVDHDLKNIIKA-NEKITS-DIDPK---------FYLKYTDI 103

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
            T+ +P  + G+   +  + P   RL+++TYS+ + V +++              T   + 
Sbjct: 104  TVGEPRRYDGDAL-QRPITPHECRLRDITYSAHIFVNIEY--------------TRGGKI 148

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
            I+++       N+ IGRIPVM++S+ C +         +  +C  D GGYF++KG EKV 
Sbjct: 149  IRRK-------NVAIGRIPVMLRSNKCVLANKSEKELAKMSECPLDPGGYFVVKGTEKVI 201

Query: 206  VAQEQICLKRLWVS-----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVY 260
            + QEQ+   R+ V       ++  +V   +  ++++  V           K G+  L   
Sbjct: 202  LVQEQLSKNRIIVEADTKKGTVSASVTSSTHERKSKSYVL---------TKHGKIYLKHN 252

Query: 261  FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNA 320
             L  +IPI + F A+G+ +D+EI+ L+        I   LFA   +   +   + + + A
Sbjct: 253  SLHEDIPIAVAFKAMGIQADREILQLV---AGHDDIHKELFAINLEEAARLGIYTR-KQA 308

Query: 321  LKYVDKLIKGTT------FPPGESTEECMNTYLFPSLH----GTKQKARFLGYMVKCLLQ 370
            L ++    K +        P  E   + + T +   +       + KA ++  MV+ +L 
Sbjct: 309  LDFIGARAKASRKPLSMRRPLSEEALDVLATVIMAHVPVERLNFRPKAIYIASMVRRVLM 368

Query: 371  AYSGRRKCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKRMAKALQRDL 419
            A    +K D+RD   NKRLELAG+LL             +LK++I    K+  + ++ D 
Sbjct: 369  AMQDEKKVDDRDYVGNKRLELAGQLLSLLFEDLFKKFNSDLKMNIDKVLKKPNRTVEFDA 428

Query: 420  YGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDL 479
            +        +++ +   +T+G  RA STG WS    + ER +GI   L R + +  L  +
Sbjct: 429  FN-------QFHFNGDYITSGFVRAISTGNWSLKRFKMER-AGITHVLSRLSFIAALGMM 480

Query: 480  RRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIF 538
             R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +T  ++T + E PI 
Sbjct: 481  TRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALTTHITTDVEEEPIA 540

Query: 539  EQLFNSGME--KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQV 596
               F  G+E   L   A       + V+++G+ +GV +    FV + RR RR   +   V
Sbjct: 541  RIAFTLGVEDIHLLTGAELYRPDSYVVYLNGNVLGVTRFPQRFVLQFRRLRRAGRVSEFV 600

Query: 597  EIKRDELQSEVRIFMDAGRILRPLLVVENM--------GKIKSLEGKNYTFQALLDHGII 648
             +  +     V I  D GRI RPL++V+            ++ L+     F   L +G+I
Sbjct: 601  SVYTNHHHQTVYIASDGGRICRPLIIVDAFTGHPRVTESHMQQLKSGARRFDDFLHNGLI 660

Query: 649  ELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARR 708
            E V   EE D   A     +       KP   TH E++   +LG   G+IP+ +H+ + R
Sbjct: 661  EYVDVNEENDANIAMYEHEI-------KPQYTTHLEIEPFTILGAVAGLIPYPHHNQSPR 713

Query: 709  VLYQSQ--KHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHIL 766
              YQ    K    AIG+   N  IR+DTL + + YPQ+P+ ++   + +G          
Sbjct: 714  NTYQCAMGKQGQGAIGY---NQLIRIDTLLYLMLYPQQPMVKSRTIELIG---------- 760

Query: 767  PRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKR 826
               +L  G N++VAV  + GY+ ED+LV+N+ASL+RG  RS+ ++     +         
Sbjct: 761  -YDKLPAGTNSMVAVMSYSGYDIEDALVLNKASLDRGFGRSQTMKKSSTVIRKYPNGTHD 819

Query: 827  RSSDDMVN--FGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHS------ 878
            R +D  V+   GK Q    R D L+ DG   +G  ++ GD+ + K     A+ +      
Sbjct: 820  RLADAPVDDTTGKRQK---RYDILEADGIAGVGERVEQGDVYVNKQTPVNANDNSSAAIM 876

Query: 879  ----------------IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSS 922
                            +  K    G + +V+++  D  +      +RQ R P LGDKFSS
Sbjct: 877  IGASNAAASVAYKSAPLSYKPPVSGYIDQVLITDTDSDQTLIKALIRQTRRPELGDKFSS 936

Query: 923  MHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGI 982
             HGQKGV G +  QE+ PFT QGI PDI++NPH FPSR T G+++E   GK       G+
Sbjct: 937  RHGQKGVCGLIVQQEDMPFTDQGINPDIIMNPHGFPSRMTVGKMIELLSGKA------GV 990

Query: 983  CSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLI 1042
             +G  +Y T F    V+ ++  L   G++  G E L  G TG+ +   ++ GP +YQRL 
Sbjct: 991  ITGTLQYGTAFGGSKVEDMSALLVENGYNYAGKETLTSGITGQPLECYVYFGPIYYQRLK 1050

Query: 1043 HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSD 1102
            HM +DK+  R  GP   LTRQP   R R GG++ GEMERDCLI +GA   L ERL   SD
Sbjct: 1051 HMVQDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGATQLLLERLMISSD 1110

Query: 1103 SYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSM 1162
            ++ +H C+KC             G      +C  C S   +V+  +PYG KL+ QEL +M
Sbjct: 1111 AFTVHACQKC-------------GLMGYNGFCPYCSSSKHVVQLTIPYGTKLMLQELMAM 1157

Query: 1163 GITLKFDTE 1171
             +  +   E
Sbjct: 1158 QVVPRLVLE 1166


>gi|171186405|ref|YP_001795324.1| DNA-directed RNA polymerase subunit B [Pyrobaculum neutrophilum
            V24Sta]
 gi|170935617|gb|ACB40878.1| RNA polymerase Rpb2 domain 6 [Pyrobaculum neutrophilum V24Sta]
          Length = 1127

 Score =  511 bits (1315), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 374/1182 (31%), Positives = 576/1182 (48%), Gaps = 136/1182 (11%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
            F  + GL +HQI S+N+F+   L K  + F            K  E E +   +   ++ 
Sbjct: 31   FIKDKGLANHQIKSFNDFLDKKLPKIVEDF------------KVVETEIKGLKLVLERIE 78

Query: 93   LDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYI 152
            +  P     +G  E  ++P  ARL+N TYS+ + +     V  +  VT   +        
Sbjct: 79   VGWPKIKESDGS-ESIIYPMEARLRNATYSAPLYLTATLYVDDEPYVTETFY-------- 129

Query: 153  QKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDC------DFDHGGYFIIKGAEKVFV 206
                         IG +P+MVKS  C +  +  G+         D GGYFII G+E+V +
Sbjct: 130  -------------IGELPIMVKSKRCNLTRLRPGEYIKKFEDPQDFGGYFIINGSERVII 176

Query: 207  AQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEI 266
            +QE +   R         +V Y ++     +  R       E  + G   +++  +  +I
Sbjct: 177  SQEDLVADRPIYDRGDKPSVKYIAKTISTGIGYR--STLTVELNRDGVIYVTLSAMPVKI 234

Query: 267  PIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVD- 325
            P  I   ALG+ +D+++V  +    +D  I   L  S+  A N+    R+  +AL ++  
Sbjct: 235  PFPIYMKALGLETDEDVVKAV---SDDPEIQKELLPSLIAA-NQIAITRE--DALDFIGG 288

Query: 326  KLIKGTTFPPG-ESTEECMNTYLFPSLHGTK-----------QKARFLGYMVKCLLQAYS 373
            K+  G   P   E   + ++ Y  P L  T            +KA  LG +VK L++   
Sbjct: 289  KVAVGQPKPIRVEKAYQLLDKYFLPHLGTTTPDEKRQQEIRLKKALMLGQIVKGLVELQL 348

Query: 374  GRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLD 433
            GRRK D++D   NKR+ L G+L+ +  +  +    + +   L++  Y    +  I+  + 
Sbjct: 349  GRRKPDDKDHVANKRVRLVGDLMTQLFRTVLKQFLQELKSQLEK-YYARGRIPHIQTIVR 407

Query: 434  ASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVG 493
              I+T  + +A +TG W          +G+   L R N + TL  LRR    +  T    
Sbjct: 408  PDIITERVRQALATGNW------VGGKTGVSQILDRTNYMSTLSYLRRVVSSLSRTQPHF 461

Query: 494  DARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQL-FNSGMEKLADD 552
            +AR  HP+ WG++C + TP+G+N GLVKNL +   ++T + E   EQL +N G+  L   
Sbjct: 462  EARDLHPTQWGRLCAVETPEGQNVGLVKNLALLAEITTGVDEGEVEQLLYNLGVVPLLKA 521

Query: 553  ASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMD 612
                + G  +V+++G  IGV  +       +R  RR+ ++  ++ I    L   V +  D
Sbjct: 522  REEGIRGA-EVYINGRLIGVHPNPEELAKTVRGMRRQGKISDEINIAY--LDGSVYVNCD 578

Query: 613  AGRILRPLLVVENMGKIK-------SLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGI 665
             GRI RPLLVVE  G++K        +   + T+  L+  G+IE +  +EEE+   A   
Sbjct: 579  GGRIRRPLLVVEG-GRLKLTKEIVEKVRRGDLTWDDLVKMGVIEYLDADEEENAHIAVDP 637

Query: 666  KYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPT 725
               L +        +TH E+  S +LG    IIP+  H+ + R  Y++   + Q++G P 
Sbjct: 638  DVDLSN--------YTHVEIVPSSILGAVGSIIPYLEHNQSPRNQYEAA-MAKQSLGLPQ 688

Query: 726  TNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHL 785
            +N   ++D+  H L+YP+RP+  T   + +G   Y       RP    GQNA+VA+  + 
Sbjct: 689  SNFLYKLDSRGHMLYYPERPIVTTRGLELVG---YSR-----RP---AGQNAVVALLTYT 737

Query: 786  GYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGR- 844
            GYN ED++++N+AS+ERGMFRS   R+Y+ E      Q      +D +       K  R 
Sbjct: 738  GYNIEDAVILNKASVERGMFRSVFYRTYETE-----EQKYPGGEEDKIEIPDSSVKGYRG 792

Query: 845  ---VDSLDDDGFPFIGANLQSGDIVIGK------YADSGA--------DHSIKLKHTERG 887
                  LD+DG       + S ++++GK      Y    A        D S+ ++  E+G
Sbjct: 793  PEAYSHLDEDGIAPPEVYVSSNEVLVGKTSPPRFYTTLEAERILKERRDASVAVRRGEKG 852

Query: 888  MVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIV 947
            +V +V+++ + +G     V LR++R P LGDKF+S HGQKGV+G L   E+ PFT  GIV
Sbjct: 853  IVDRVIITESPEGNKLVKVRLRELRVPELGDKFASRHGQKGVVGMLLRHEDMPFTEDGIV 912

Query: 948  PDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHR 1007
            PDI++NPHA PSR T  QLLE+  GK  A+LG  +       AT F     + + + L +
Sbjct: 913  PDIIVNPHALPSRMTVAQLLESMAGKVGASLGALVD------ATAFEGVKEEDLRKLLLK 966

Query: 1008 AGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVAD 1067
             G+   G E +Y G TGE + + IFIG  +YQ+L HM  DK+  R  GPV  LTRQP   
Sbjct: 967  LGYKWDGKEVMYSGITGERLVADIFIGVVYYQKLHHMVADKIHARARGPVQILTRQPTEG 1026

Query: 1068 RKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGR 1127
            R R GG++ GEMERD LIAHGA+A L+ERL   SD Y M++C  C   A +         
Sbjct: 1027 RSREGGLRLGEMERDVLIAHGASALLYERLVESSDKYTMYVCELCGLPAYL-------DA 1079

Query: 1128 KVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFD 1169
            K   P C I        K  VPY  KLL QEL ++GI  K +
Sbjct: 1080 KSNKPKCPIHGDTGQFAKVVVPYAYKLLLQELIALGIYPKLE 1121


>gi|145592515|ref|YP_001154517.1| DNA-directed RNA polymerase subunit B [Pyrobaculum arsenaticum DSM
            13514]
 gi|145284283|gb|ABP51865.1| DNA-directed RNA polymerase, subunit B' / DNA-directed RNA
            polymerase, subunit B' [Pyrobaculum arsenaticum DSM
            13514]
          Length = 1127

 Score =  511 bits (1315), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 379/1183 (32%), Positives = 579/1183 (48%), Gaps = 138/1183 (11%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
            F  + GL SHQI S+N+F+   L +  + F            K  + E +   +   ++ 
Sbjct: 31   FIKDKGLASHQIKSFNDFLDKKLPRIVEDF------------KVVDTEIKGLKLVLEKIE 78

Query: 93   LDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYI 152
            +  P     +G  E  ++P  ARL+N TYS+ + +                       Y+
Sbjct: 79   VGWPRIKESDGS-ESLIYPMEARLRNATYSAPLYLTAVL-------------------YV 118

Query: 153  QKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCDF------DHGGYFIIKGAEKVFV 206
              E  + ET    IG +P+MVKS  C +  +   +         D GGYFII G+E+V +
Sbjct: 119  DDEPYATET--FYIGELPIMVKSKRCNLTRLRPSEYPKRFEDPQDFGGYFIINGSERVII 176

Query: 207  AQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEI 266
            +QE +   R         +V + ++     +  R       E  K G    ++  +  +I
Sbjct: 177  SQEDLVADRPIYDKGDKPSVKFLAKTISTGIGYR--STLTVELNKDGVIYATLSAIPVKI 234

Query: 267  PIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVD- 325
            P  I   ALG+ +D+++V  +    +D  I   L  S+  A N+    R+  +AL Y+  
Sbjct: 235  PFPIYMKALGLETDEDVVKAV---SDDPDIQKELLPSLVVA-NQIAITRE--DALDYIGG 288

Query: 326  KLIKGTTFPPG-ESTEECMNTYLFPSLHGT-----KQ------KARFLGYMVKCLLQAYS 373
            K+  G   P   E   + ++ Y  P L  T     KQ      KA  LG +VK L++   
Sbjct: 289  KVAVGQPRPVRVERALQLLDRYFLPHLGTTVPDEKKQQEIRLKKALMLGQIVKGLVELQL 348

Query: 374  GRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLD 433
            GRRK D++D   NKR+ L G+L+ +  +       + +   L++  Y    +  ++  + 
Sbjct: 349  GRRKPDDKDHVANKRVRLVGDLMTQLFRTVFKQLLQELRSQLEK-YYARGRIPHLQTIVR 407

Query: 434  ASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVG 493
              I+T  + +A +TG W          +G+   L R N L TL  LRR    +  T    
Sbjct: 408  PDIITERVRQALATGNW------VGGKTGVSQILDRTNYLSTLSYLRRVVSSLSRTQPHF 461

Query: 494  DARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQ-LFNSGMEKLADD 552
            +AR  HP+ WG++C + TP+G+N GLVKNL +   ++T + E   EQ L   G+  +   
Sbjct: 462  EARDLHPTQWGRLCAVETPEGQNVGLVKNLALLAEITTGVDENDVEQMLLQQGVVPILKA 521

Query: 553  ASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMD 612
                + G  +V+++G  IG+  +    V  +R  RR+ ++  ++ I    L   V +  D
Sbjct: 522  REEGVRGA-EVYLNGRLIGIHPEPEELVKTVRSLRRQGKISDEINIAY--LNGVVYVNSD 578

Query: 613  AGRILRPLLVVENMGKIK-------SLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGI 665
             GRI RPLLVVE+ GK+K        ++    T+  LL  G++E +  +EEE+   A   
Sbjct: 579  GGRIRRPLLVVED-GKLKLTKDIVERVKRGELTWDDLLKMGVVEYLDADEEENAHIAVDP 637

Query: 666  KYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPT 725
            +  L +        +TH E+  S +LG    IIPF  H+ + R  Y++   + Q++G P 
Sbjct: 638  EGDLSN--------YTHVEIIPSSILGAIASIIPFLEHNQSPRNQYEA-AMAKQSLGLPQ 688

Query: 726  TNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHL 785
            +N   ++D+  H L+YP+RP+  T   + +G   Y       RP    GQNA+VA+  + 
Sbjct: 689  SNFLYKLDSRGHMLYYPERPIVTTRGLELVG---YSK-----RP---AGQNAVVALLTYT 737

Query: 786  GYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGR- 844
            GYN ED++++N+AS+ERGMFRS   R+Y+ E      Q      +D +       K  R 
Sbjct: 738  GYNIEDAVILNKASVERGMFRSVFYRTYETE-----EQRYPGGEEDKIEIPDSSVKGYRG 792

Query: 845  ---VDSLDDDGFPFIGANLQSGDIVIGKYA--------------DSGADHSIKLKHTERG 887
                  LD+DG       + S +++IGK +                  D S+ ++  E+G
Sbjct: 793  PEAYSHLDEDGIAPPEVYVSSSEVLIGKTSPPRFYTTLETERILKERRDASVAVRRGEKG 852

Query: 888  MVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIV 947
            +V +V+++ + +G     V LR++R P LGDKF+S HGQKGV+G L  QE+ PFT +GIV
Sbjct: 853  IVDRVIVTESPEGNKLVKVRLRELRIPELGDKFASRHGQKGVVGMLLRQEDMPFTEEGIV 912

Query: 948  PDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHR 1007
            PDI++NPHA PSR T  QLLE+  GK  AA G  +       ATPF     + + + L +
Sbjct: 913  PDIIVNPHALPSRMTVAQLLESMAGKVGAATGNLVD------ATPFEGVKEEDLRKLLLK 966

Query: 1008 AGFSKW-GTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVA 1066
             G+ KW G E +Y G TGE + + IFIG  +YQ+L HM  DK+  R  GPV  LTRQP  
Sbjct: 967  LGY-KWDGKEVMYSGITGEKLVADIFIGIVYYQKLHHMVADKIHARARGPVQILTRQPTE 1025

Query: 1067 DRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGG 1126
             R R GG++ GEMERD LIAHGA+A L+ERL   SD Y M++C  C   A +        
Sbjct: 1026 GRSREGGLRLGEMERDVLIAHGASALLYERLVESSDKYTMYVCELCGLPAYL-------D 1078

Query: 1127 RKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFD 1169
             K   P C I        K  VPY  KLL QEL ++GI  K +
Sbjct: 1079 AKSNKPKCPIHGDTGQFAKVTVPYAFKLLLQELIALGIYPKLE 1121


>gi|320581721|gb|EFW95940.1| DNA-directed RNA polymerase III [Ogataea parapolymorpha DL-1]
          Length = 1138

 Score =  510 bits (1314), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 387/1196 (32%), Positives = 585/1196 (48%), Gaps = 160/1196 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++S+N F+   L+K   +  + + +   DP    E   +Y  +R G  
Sbjct: 32   AFLQVKGLVKQHLDSFNFFVDTDLKKIIQANEKVLSD--VDP----EFYLKYLDIRVGYK 85

Query: 92   TLDKPSFFAGNGGDEHDMFPRH-ARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
            +        GN  +   + P H  RL+++TYS+ + V V+   YT+          GR+ 
Sbjct: 86   S-------GGNPNETEVLLPPHECRLRDLTYSAPIYVDVE---YTR----------GRKI 125

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG------DCDFDHGGYFIIKGAEKV 204
             I ++        + IGR+P+M++S+ C + G  +       +C  D GGYFI+ G EKV
Sbjct: 126  IIHRD--------LEIGRMPIMLRSNKCILNGKNEAQMAYLNECPLDPGGYFIVNGTEKV 177

Query: 205  FVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLS----VY 260
             + QEQ+   R+ V          +++ K+N  IV+    S   + K    V++    +Y
Sbjct: 178  ILVQEQLSKNRIIV----------EADEKKN--IVQASVTSSTHERKSKTYVVTKNDKIY 225

Query: 261  F----LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRK 316
                 +S EIPI I+  A G+ SD EI+ L+   C + S+   LFA   +   K   + +
Sbjct: 226  LKHNSISEEIPIVIVLKAAGLVSDLEILQLV---CGNDSVYQDLFAVNFEEAAKLGIYSQ 282

Query: 317  GRNALKYVD---KLIKGTTFPPGESTEECMNTYLFPSL-HGT------KQKARFLGYMVK 366
             + AL+Y+    K I+    P     +E +       + H T      K+KA ++  M +
Sbjct: 283  -KEALEYIGRKVKTIRRLNAPKLSILQEGIEAIATTVIAHITVENLDFKEKALYIAIMTR 341

Query: 367  CLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR 426
             ++ A    +  D+RD   NKRLELAG+L+    +             L + L     V 
Sbjct: 342  RVIMAMHNPKLVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNNDFKANLDKILKKPSRVS 401

Query: 427  PIEYYLDASI----LTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
              +  L  +I    +T GL+RA STG WS    + ER +G+   L R + +  L  + R 
Sbjct: 402  EFDALLHINIHSSNITTGLNRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALGMMTRI 460

Query: 483  RQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQL 541
              Q + + KV   R   PS +G +C   TP+GE CGLVKNL +   ++T   E PI +  
Sbjct: 461  SSQFEKSRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEDPIKKLC 520

Query: 542  FNSGMEKLA--DDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIK 599
            +  G E ++  D ++    G F V ++G  IG  +    FVS+ R  RR  +L   V I 
Sbjct: 521  YILGAEDISVIDSSTLHNNGTFGVHLNGTLIGTTRFPNVFVSKFRHLRRTGKLSAFVSIF 580

Query: 600  RDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGIIELVG 652
             +  QS V I  D GRI RPL++VEN GK       +K L    ++F   L +G++E + 
Sbjct: 581  TNVHQSAVHIAADGGRICRPLIIVEN-GKAKVTAEHLKRLRDGEWSFDDFLTNGLVEYLD 639

Query: 653  TEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 712
              EE D   A       KDI        TH E++   +LG   G+IP+ +H+ + R  YQ
Sbjct: 640  VNEENDSLIAL----YEKDITGST----THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQ 691

Query: 713  SQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELY 772
                  QAIG    N   R+DTL + + YPQ+P+ +T   +           ++   +L 
Sbjct: 692  C-AMGKQAIGAIAYNQFRRIDTLLYLMCYPQQPMVKTKTIE-----------LIDYDKLP 739

Query: 773  NGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVD-----NKEMQVKRR 827
             GQNA VAV  + GY+ ED+LV+N+AS++RG  R + +R   A +      +K++    R
Sbjct: 740  AGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCQVLRKTTAVLKRYPNHSKDILAGMR 799

Query: 828  SSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSI-------- 879
              +D    GK    I + ++L  DG   +G  +QSG   I K   + A  S+        
Sbjct: 800  VKED----GK---PIFQHEALGPDGLAEVGVEVQSGQTYINKCVPTNATESVVGGQPTIN 852

Query: 880  -KLKHTE---------RGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGV 929
             + +H E           +V +V++S +D+ +    V LRQ R P LGDKFSS HGQKGV
Sbjct: 853  QQQQHRETPVNYRAPVSSVVDQVMMSVSDNDQALIKVLLRQTRRPELGDKFSSRHGQKGV 912

Query: 930  LGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRY 989
             G +  QE+ PF   GI PDI++NPH FPSR T G++LE   GK       G+  G  +Y
Sbjct: 913  CGIIVQQEDMPFNDDGISPDIIMNPHGFPSRMTVGKMLELVSGKA------GVLDGSLQY 966

Query: 990  ATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKV 1049
             T F    ++ +++ L   GF+  G + LY G TGE +++ IF GP +YQ+L HM  DK+
Sbjct: 967  GTCFGGSKLEDMSQILIDKGFNYSGKDMLYSGITGEALQAYIFFGPIYYQKLKHMVLDKM 1026

Query: 1050 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHIC 1109
              R  GP   LTRQP   R R GG++ GEMERDC+IA+GA+  L ERL   SD++ + +C
Sbjct: 1027 HARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMLSSDAFDVDVC 1086

Query: 1110 RKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
              C             G      +C  C + + +VK  +PY AKLL QEL SM I 
Sbjct: 1087 NSC-------------GLMGYNSWCPSCKTSEGVVKMTIPYAAKLLFQELISMNIA 1129


>gi|40388703|gb|AAR85529.1| RNA polymerase II [Botryotinia fuckeliana]
          Length = 952

 Score =  510 bits (1314), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 344/981 (35%), Positives = 496/981 (50%), Gaps = 120/981 (12%)

Query: 193  GGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE-----NKRNRLI----VRLV 242
            GGYFII G+EKV +AQE+     + V        V+Y +E      K +RLI    ++L 
Sbjct: 1    GGYFIINGSEKVLIAQERSAANIVQVFKKPANSAVSYLAEIRSALEKGSRLISSLQIKLY 60

Query: 243  DMSKFEDIKGGEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILF 301
            D         G+ V S   ++  +IPI I+F ALGV SD++I+N I +   D  +L +L 
Sbjct: 61   DKGDSNRGGFGKTVKSTLPYIKADIPIAIVFRALGVVSDEDILNHICYDRNDTQMLEMLK 120

Query: 302  ASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTE---ECMNTYLFPSLH----GT 354
              I +A    D       AL ++ K   GT+    +  +   + M   L P +       
Sbjct: 121  PCIEEAFVIQDR----EVALDFIGKRGNGTSLTRDKRIKYARDIMQKELLPHISQKEGSE 176

Query: 355  KQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKA 414
             +KA FLGYMV  LLQ   GRR+ D+RD F  KRL+LAG LL +  +         + + 
Sbjct: 177  TRKAFFLGYMVHKLLQCALGRRETDDRDHFGKKRLDLAGPLLAKLFRNLFRRLTTDVYRY 236

Query: 415  LQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQ 474
            LQR +  +R    +   + ++ +TNGL  + +TG W    K     +G+   L R     
Sbjct: 237  LQRCVENNREFN-LTLGVKSTTITNGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFAS 295

Query: 475  TLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SI 533
            TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   V+  + 
Sbjct: 296  TLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVTVGTP 355

Query: 534  LEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELP 593
             +PI E +    ME L +          KVFV+G W+G+ +D    V  ++  RR   + 
Sbjct: 356  SDPIVEFMIQRNMEVLEEYEPLRAPNATKVFVNGVWVGIHRDPAHLVKCVQDLRRSHLIS 415

Query: 594  TQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------------------------- 625
             +V + R+    E +IF DAGR+ RPLLV++N                            
Sbjct: 416  HEVSLIREIRDREFKIFTDAGRVCRPLLVIDNDPDSANKGNLVLNKDHIRRLEDDQLLPA 475

Query: 626  -MGKIKSLEGKNYTFQALLDHGIIELVGTEEEE-----------DCCTAWGIKYLLKDIE 673
             M K + +    Y FQ L++ G++E +  EEEE           D        Y ++  E
Sbjct: 476  NMDKDEKVRNGYYGFQGLINDGVVEYLDAEEEETVMITMTPEDLDISRQLQAGYQIRPDE 535

Query: 674  D-------KKPIK-----FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAI 721
                    K PI      +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+
Sbjct: 536  SGDLNKRVKAPINPTAHVWTHCEIHPSMILGICASIIPFPDHNQSPRNCYQS-AMGKQAM 594

Query: 722  GFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAV 781
            G   TN  +R+DT+++ L+YPQ+PL  T   +            L   EL  GQNAIVA+
Sbjct: 595  GVFLTNFDVRMDTMANILYYPQKPLATTRSME-----------FLKFRELPAGQNAIVAI 643

Query: 782  NVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQV-----KRRSSDDMVNFG 836
              + GYNQEDS++MN++S++RG+FRS   R+Y  +     M V     K   SD      
Sbjct: 644  MCYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQEKRIGMNVVEQFEKPYRSD------ 697

Query: 837  KIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH---------------SIKL 881
             ++ K G  D LDDDG    G  +   DI+IGK A    D                S  L
Sbjct: 698  TLKLKQGTYDKLDDDGIVAPGVRVTGADIIIGKTAPIAPDSEEMGQRTKAHVKRDASTPL 757

Query: 882  KHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPF 941
            + TE G+V +V++++N +G  F  V +R  + P +GDKF+S HGQKG +G    Q++ PF
Sbjct: 758  RSTESGLVDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYMQQDMPF 817

Query: 942  TIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAI 1001
            T +G+VPD++INPHA PSR T   L+E  L K ++ L      GL+  ATPF   +VD++
Sbjct: 818  TREGVVPDLIINPHAIPSRMTIAHLIECQLSK-VSTL-----RGLEGDATPFTEVTVDSV 871

Query: 1002 TEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLT 1061
            ++ L   G+   G E +Y G TG  + + +F+GPT+YQRL HM +DK+  R  GPV  LT
Sbjct: 872  SKLLRAHGYHSRGFEIMYHGHTGRKMMAQVFLGPTYYQRLRHMVDDKIHARARGPVQILT 931

Query: 1062 RQPVADRKRFGGIKFGEMERD 1082
            RQPV  R R GG++FGEMERD
Sbjct: 932  RQPVEGRARDGGLRFGEMERD 952


>gi|50292925|ref|XP_448895.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528208|emb|CAG61865.1| unnamed protein product [Candida glabrata]
          Length = 1133

 Score =  510 bits (1313), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 373/1192 (31%), Positives = 587/1192 (49%), Gaps = 153/1192 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++S+N F+   L+K   +    ++    DP    E   +Y  +R GQ 
Sbjct: 38   AFLKVKGLVKQHLDSFNYFVDVDLKKIIKA--NQLILSDVDP----EFYLKYVDIRVGQ- 90

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
                    +G+   +  + P   RL++MTYS+ + V ++   YT+          GR   
Sbjct: 91   -------RSGSPHKDQLVPPHECRLRDMTYSAPIYVDIE---YTR----------GRNII 130

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVF 205
            + K        N+ IGR+P+M++S+ C + G ++       +C  D GGYFI+ G EKV 
Sbjct: 131  MHK--------NVEIGRMPIMLRSNKCILHGADEKMMARLSECPLDPGGYFIVNGTEKVI 182

Query: 206  VAQEQICLKRLWVS-----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVY 260
            + QEQ+   R+ V      + +  +V   +  ++++  V           K G+  L   
Sbjct: 183  LVQEQLSKNRIIVEADEKKDIVQASVTSSTHERKSKTYVV---------TKNGKIYLKHN 233

Query: 261  FLSTEIPIWILFFALGVSSDKEIVNLIDFTC-EDCSILNILFASIHDAD--NKCDEFRKG 317
             ++ E+PI I+  A G+ SD EI+ L+   C  D S  +I   ++ +A   N C +    
Sbjct: 234  SIAEEVPIVIVLKAAGIISDLEIMQLV---CGNDSSYQDIFSVNLEEAAKLNICTQ---- 286

Query: 318  RNALKYVDKLIKG------TTFPPG-ESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQ 370
            + AL+Y+   +K       T    G E+    +  +L       ++KA ++  M + ++ 
Sbjct: 287  QQALEYIGAKVKTMRRQKLTILQEGIEAIATTIIAHLTVEALDFREKALYIATMTRRVVM 346

Query: 371  AYSGRRKCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKRMAKALQRDL 419
            A    +  D+RD   NKRLELAG+L+             + K+ I    K+  +A++ D 
Sbjct: 347  AMHNPKMVDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDA 406

Query: 420  YGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDL 479
                    +   + ++ +T+GL+RA STG WS    + ER +G+   L R + +  L  +
Sbjct: 407  L-------LSINVHSNNITSGLNRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALGMM 458

Query: 480  RRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLVSTSILEPIF 538
             R   Q + + KV   R   PS +G +C   TP+GE CGLVKNL + T + +    EPI 
Sbjct: 459  TRISSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIR 518

Query: 539  EQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEI 598
            +  +  G+E ++   S SL   + V+++G  IG  K   +FVS  R  RR  ++   + I
Sbjct: 519  KLCYVLGVEPISLLDSASLHLNYGVYLNGTLIGTTKFPSNFVSRFRFLRRTGKVSEFISI 578

Query: 599  KRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGIIELV 651
              ++  + V I  D GRI RPL++V++ GK       +K L      F   L  G++E +
Sbjct: 579  YTNDHHNAVHIATDGGRICRPLIIVKD-GKSMVEAEHLKRLLSGELVFDDFLKLGLVEYL 637

Query: 652  GTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLY 711
               EE D   A   K +  DI        TH E++   +LG   G+IP+ +H+ + R  Y
Sbjct: 638  DVNEENDSYIALYEKDITHDI--------THLEIEPFTVLGAVAGLIPYPHHNQSPRNTY 689

Query: 712  QSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPEL 771
            Q      QAIG    N   R+DTL + + YPQ+P+ +T   +           ++   +L
Sbjct: 690  QCAM-GKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIE-----------LIDYDKL 737

Query: 772  YNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDD 831
              GQNA VAV  + GY+ ED+LV+N++S++RG  R E  R     +       K      
Sbjct: 738  PAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKKYPNHTKDALCGM 797

Query: 832  MVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKY-----ADSGADHSIKLKHT-- 884
             V+       I + +SL  DG   +G  ++SG I I K      +D+ A +  + + T  
Sbjct: 798  RVDENG--EAIWQHESLGPDGLGEVGLKIRSGQIYINKSVPVQSSDAMAVNQAQYRETPV 855

Query: 885  -----ERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENF 939
                 E  ++ +V++S++D+ ++   V LRQ R P LGDKFSS HGQKGV G +  QE+ 
Sbjct: 856  IYRAPELSIIDQVMMSTSDNDQDLIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVQQEDM 915

Query: 940  PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVD 999
            PF  QGI PDI++NPH FPSR T G+++E   GK       G+ +G   Y T F    ++
Sbjct: 916  PFNDQGICPDIIMNPHGFPSRMTVGKMIELISGKA------GVLNGSLEYGTCFGGSKLE 969

Query: 1000 AITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHP 1059
             +++ L   GF+  G + LY G TGE +++ IF GP +YQ+L HM  DK+  R  GP   
Sbjct: 970  DMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAV 1029

Query: 1060 LTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVI 1119
            LTRQP   R R GG++ GEMERDC+IA+GA+  L ERL   SD++++ +C  C       
Sbjct: 1030 LTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCSNC------- 1082

Query: 1120 QRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                  G      +C  C S + I+K  +PY AKLL QEL +M I  +   E
Sbjct: 1083 ------GLMGYSGWCSTCKSAEHIIKMTIPYAAKLLFQELLAMNIAPRLRLE 1128


>gi|19114602|ref|NP_593690.1| DNA-directed RNA polymerase III complex subunit Rpc2
            [Schizosaccharomyces pombe 972h-]
 gi|1710663|sp|Q10233.1|RPC2_SCHPO RecName: Full=DNA-directed RNA polymerase III subunit RPC2; Short=RNA
            polymerase III subunit 2; Short=RNA polymerase III
            subunit C2; AltName: Full=C128; AltName:
            Full=DNA-directed RNA polymerase III 130 kDa polypeptide;
            AltName: Full=RPC130
 gi|1204209|emb|CAA93558.1| DNA-directed RNA polymerase III complex subunit Rpc2
            [Schizosaccharomyces pombe]
 gi|76782167|gb|ABA54854.1| RNA polymerase III large subunit Rpc2 [Schizosaccharomyces pombe]
          Length = 1165

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 382/1216 (31%), Positives = 579/1216 (47%), Gaps = 183/1216 (15%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETI--VEPGYDPSKKGEGEWRYASMRFG 89
            +F    GLV   ++SYN F+   L+K   +  +    VEP +          +Y  +R G
Sbjct: 56   AFLKVKGLVKQHLDSYNYFVDVDLKKIVQANEKVTSDVEPWF--------YLKYLDIRVG 107

Query: 90   Q-VTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGR 148
              V  D  +  A        + P   RL+++TY + + V +++              T  
Sbjct: 108  APVRTDADAIQA-------SISPHECRLRDLTYGANIYVDIEY--------------TRG 146

Query: 149  EQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAE 202
            +Q +++        N+ IGR+PVM++S+ C + G  +       +C  D GGYFI+KG E
Sbjct: 147  KQVVRRR-------NVPIGRMPVMLRSNKCVLSGKNEMEMAALNECPLDPGGYFIVKGTE 199

Query: 203  KVFVAQEQICLKRLWVSNSMG---WTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            KV + QEQ+   R+ V        W  +  S     +    ++        K G+  L  
Sbjct: 200  KVILVQEQLSKNRIIVEAEPKKGLWQASVTSSTHERKSKTYVI-------TKNGKLYLKH 252

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLI--------DF---TCEDCSILNILFASIHDAD 308
              ++ +IPI ++  A+G+ SD+EI  L+        D    + E+C+ LNI  A      
Sbjct: 253  NSVADDIPIVVVLKAMGLQSDQEIFELVAGAEASYQDLFAPSIEECAKLNIYTA------ 306

Query: 309  NKCDEFRKGRNALKYVDKLIK------GTTFPPGESTEECMNTYLFPSLH----GTKQKA 358
                     + AL+Y+   +K          PP E   E +   +   ++      + KA
Sbjct: 307  ---------QQALEYIGARVKVNRRAGANRLPPHEEALEVLAAVVLAHINVFNLEFRPKA 357

Query: 359  RFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL-----------ERELKVHIAHA 407
             ++G M + +L A     + D+RD   NKRLELAG+LL             +LK++I   
Sbjct: 358  VYIGIMARRVLMAMVDPLQVDDRDYVGNKRLELAGQLLALLFEDLFKKFNSDLKLNIDKV 417

Query: 408  RKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANL 467
             K+  +  + D Y   TV        +  +T G+ RA STG WS    + ER +G+   L
Sbjct: 418  LKKPHRTQEFDAYNQLTVH-------SDHITQGMVRALSTGNWSLKRFKMER-AGVTHVL 469

Query: 468  GRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-T 526
             R + +  L  + R   Q + T KV   R    S +G +C   TP+GE CGLVKNL + T
Sbjct: 470  SRLSYISALGMMTRITSQFEKTRKVSGPRSLQASQFGMLCTSDTPEGEACGLVKNLALMT 529

Query: 527  GLVSTSILEPIFEQLFNSGMEKLADDASYSLG--GKFKVFVDGDWIGVCKDSLSFVSELR 584
             + +    EPI +  +  G+E +   +   L   G + V+++G  +G+ +    FV+  R
Sbjct: 530  HITTDEEEEPIIKLAYAFGIEDIHVISGRELHSHGTYLVYLNGAILGISRYPSLFVASFR 589

Query: 585  RKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN-MGKIKS-----LEGKNYT 638
            + RR  ++   + I  +  Q  V I  D GRI RPL++V+N + K++S     L+   + 
Sbjct: 590  KLRRSGKISPFIGIFINTHQRAVFISTDGGRICRPLIIVQNGLPKVESKHIRLLKEGKWG 649

Query: 639  FQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGII 698
            F+  L  G++E V   EE D      I    +DI        TH E++   +LG   G+I
Sbjct: 650  FEDFLKQGLVEYVDVNEENDSL----ISVYERDITPDT----THLEIEPFTILGAVAGLI 701

Query: 699  PFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKP 758
            P+ +H+ + R  YQ      QAIG    N   R+DTL + + YPQ+P+ +T   + +G  
Sbjct: 702  PYPHHNQSPRNTYQC-AMGKQAIGAIAYNQLQRIDTLLYLMVYPQQPMVKTKTIELIG-- 758

Query: 759  GYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVD 818
                       +L  GQNA VA+  + GY+ ED+LV+N++S++RG  R +    +   V 
Sbjct: 759  ---------YDKLPAGQNATVAIMSYSGYDIEDALVLNKSSIDRGFGRCQVFHKHSVIVR 809

Query: 819  NKEMQVKRRSSDDMVN--FGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA- 875
                    R  D   +   G++  K G V+   DDG   +G  +Q G I + K   + A 
Sbjct: 810  KYPNGTHDRIGDPQRDPETGEVVWKHGVVE---DDGLAGVGCRVQPGQIYVNKQTPTNAL 866

Query: 876  DHSIKLKHT-----------------ERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGD 918
            D+SI L HT                 E G + KV+L++ D  +    V +RQ R P LGD
Sbjct: 867  DNSITLGHTQTVESGYKATPMTYKAPEPGYIDKVMLTTTDSDQTLIKVLMRQTRRPELGD 926

Query: 919  KFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAL 978
            KFSS HGQKGV G +  QE+ PF  QGI PDI++NPH FPSR T G+++E   GK     
Sbjct: 927  KFSSRHGQKGVCGVIVQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMIELLSGK----- 981

Query: 979  GKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFY 1038
              G+  G   Y T F    V+  +  L   G++  G + L  G TGE + + IF+GP +Y
Sbjct: 982  -VGVLRGTLEYGTCFGGTKVEDASRILVEHGYNYSGKDMLTSGITGETLEAYIFMGPIYY 1040

Query: 1039 QRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLF 1098
            Q+L HM  DK+  R  GP   LTRQP   R R GG++ GEMERDCLIA+GA+  L ERL 
Sbjct: 1041 QKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLM 1100

Query: 1099 TLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQE 1158
              SD+  + +C +C            G    +G +C  C S  ++VK  +PY AKLL QE
Sbjct: 1101 ISSDACDVDVCGQC------------GLLGYKG-WCNSCQSTREVVKMTIPYAAKLLFQE 1147

Query: 1159 LFSMGIT--LKFDTEF 1172
            L SM I   L  + EF
Sbjct: 1148 LLSMNIVPRLALEDEF 1163


>gi|70794976|gb|AAZ08462.1| RNA polymerase II second largest subunit [Platanus orientalis]
          Length = 923

 Score =  509 bits (1311), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 325/945 (34%), Positives = 502/945 (53%), Gaps = 96/945 (10%)

Query: 158  SDETTNIIIGRIPVMVKSDLCWM------KGVEKGDCDFDHGGYFIIKGAEKVFVAQEQI 211
            + E T + IG++P+M++S  C +         E G+C +D GGYFII G+EKV +AQE++
Sbjct: 14   TQEFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKM 73

Query: 212  CLKRLWV-----SNSMGWTVAYKS-ENKRNR----LIVRLVDMSKFEDIKGGEKV-LSVY 260
                ++V      N   +    +S    +NR    + VR++  +  +    G+ +  ++ 
Sbjct: 74   STNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRASAKGGSSGQYIRATLP 133

Query: 261  FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNA 320
            ++ TEIPI I+F ALG  +DK+I+  I +   D  ++ +L  S+ +A       +  + A
Sbjct: 134  YIRTEIPIIIVFRALGFVADKDILEHICYDFLDTQMMELLRPSLEEAF----VIQNQQVA 189

Query: 321  LKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSL----HGTKQKARFLGYMVKCLL 369
            L Y+ K  +G+T   G + E       E +   + P +    +   +KA + GY++  LL
Sbjct: 190  LDYIGK--RGSTV--GVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLL 245

Query: 370  QAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIE 429
                GRR  D+RD + NKRL+LAG LL    ++      + +   +Q+ +   + V  ++
Sbjct: 246  LCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKEVN-LQ 304

Query: 430  YYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYT 489
            + + A  +T+GL  + +TG W        R +G+   L R     TL  LRR    +   
Sbjct: 305  FAIKAKTITSGLKYSLATGNWGQANAAGTR-AGVSQVLNRLTYASTLSHLRRLNSPIGRE 363

Query: 490  GKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEK 548
            GK+   R  H SHWG +C   TP+G+ CGLVKNL +   ++  S   PI E L     E 
Sbjct: 364  GKLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTEN 423

Query: 549  LADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVR 608
              + +   +    K+FV+G W+G+ ++    V+ LR+ RR+ ++ T+V + RD    E+R
Sbjct: 424  FEEISPAVIPQATKIFVNGCWVGIHRNPELLVNTLRKLRRQVDVNTEVGVIRDIHLKELR 483

Query: 609  IFMDAGRILRPLLVVENM------GKIKSLEGKNYT----FQALLDHGIIELVGTEEEED 658
            ++ D GR  RPL +VE          I++L+ +       +  L+  G IE V TEEEE 
Sbjct: 484  LYTDYGRCSRPLFIVEKQRLLIKKKDIRALQQRETPEDGGWHDLVAKGYIEYVDTEEEET 543

Query: 659  CCTAWGIKYLLK---DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQK 715
               +  I  L+    + E+     +THCE+  S +LG+   IIPF +H+ + R  YQS  
Sbjct: 544  TMISMTINDLVTARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM 603

Query: 716  HSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQ 775
               QA+G   TN  +R+DTL++ L+YPQ+PL  T   + L      H   LP      G 
Sbjct: 604  -GKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHL------HFRQLP-----AGI 651

Query: 776  NAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF 835
            NAIVA+  + GYNQEDS++MN++S++RG FRS   RSY+ E       VK        +F
Sbjct: 652  NAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE-------DF 704

Query: 836  GK------IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD-------------SGAD 876
            G+      +  + G  D LDDDG    G  +   D++IGK                +  D
Sbjct: 705  GRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEEPQGQASRYTRRD 764

Query: 877  HSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ 936
            HS  L+H+E GMV +V+L++N DG  F  V +R VR P +GDKFSS HGQKG +G   +Q
Sbjct: 765  HSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQ 824

Query: 937  ENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP 996
            E+ P+T++GI PDI++NPHA PSR T GQL+E  +GK  A +GK      +  ATPF   
Sbjct: 825  EDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK------EGDATPFTDV 878

Query: 997  SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRL 1041
            +VD I++ LH+ G+   G E +Y+G TG  + ++IF+GPT+YQRL
Sbjct: 879  TVDNISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTYYQRL 923


>gi|68490742|ref|XP_710813.1| hypothetical protein CaO19.13269 [Candida albicans SC5314]
 gi|68490765|ref|XP_710802.1| hypothetical protein CaO19.5847 [Candida albicans SC5314]
 gi|46432047|gb|EAK91554.1| hypothetical protein CaO19.5847 [Candida albicans SC5314]
 gi|46432059|gb|EAK91565.1| hypothetical protein CaO19.13269 [Candida albicans SC5314]
 gi|238879996|gb|EEQ43634.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Candida albicans
            WO-1]
          Length = 1157

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 378/1190 (31%), Positives = 578/1190 (48%), Gaps = 144/1190 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++SYN F+   L+K   +    +V    DP    E   +Y  +R G  
Sbjct: 47   AFLKVKGLVKQHLDSYNYFVDVDLKKIIKA--NELVLSDVDP----EFYVKYLDIRVGHK 100

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
            +  KP      G  E  + P   RL+++TYS+ + V V+   YT+ R      K  R   
Sbjct: 101  STSKP------GVKEVILPPHECRLRDLTYSAPIYVDVE---YTRGR------KIIRHND 145

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG------DCDFDHGGYFIIKGAEKVF 205
            ++            IGR+PVM++S+ C ++G+ +       +C  D GGYF++ G EKV 
Sbjct: 146  LE------------IGRMPVMLRSNKCMLEGMSEATMAQVEECPLDPGGYFVVNGTEKVI 193

Query: 206  VAQEQICLKRLWVS--NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKV-LSVYFL 262
            + QEQ+   R+ V      G   A  + +   R        SK   I   +K+ L    +
Sbjct: 194  LVQEQLSKNRIIVEADEKKGIVQASVTSSTHER-------KSKTYVITKNDKIYLKHNSI 246

Query: 263  STEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALK 322
            S +IPI I+  A G+ SD EI+ L+   C   S    LF    +   + + F + + AL 
Sbjct: 247  SEDIPIVIILKAAGIVSDLEILQLV---CGSDSNYQDLFVVNFEEAARLEVFTQ-QQALY 302

Query: 323  YVDKLIK------GTTFPPGESTEECMNTYLFPSLHGT----KQKARFLGYMVKCLLQAY 372
            YV K +K             +   E + T +   L  +    ++KA ++  M + ++ A 
Sbjct: 303  YVGKRVKTIRRAGAPKLSQLQEGIEAIATTIIAHLTVSDLQFREKALYIATMARRVVMAM 362

Query: 373  SGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDRTVRPI 428
               +  D+RD   NKRLELAG+L+    E   K   +  +  + K L++          +
Sbjct: 363  HNPKMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNSDFKANIDKVLKKPSRTSEFDALL 422

Query: 429  EYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQY 488
               + ++ +T GL+RA STG WS    + ER +G+   L R + +  L  + R   Q + 
Sbjct: 423  SINIHSNNITMGLNRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALGMMTRISSQFEK 481

Query: 489  TGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGME 547
            + KV   R   PS +G +C   TP+GE CGLVKNL +   ++T   E P+ +     G E
Sbjct: 482  SRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEAPVKKLCIALGCE 541

Query: 548  KL--ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQS 605
             +   D A+  + G F V+++G  IG  +  + FV + R  RR  ++   + I  +    
Sbjct: 542  PIFALDSATLHVDGNFGVYLNGTLIGTTRFPVKFVHDFRHLRRVGKVSAFISIYTNTHHQ 601

Query: 606  EVRIFMDAGRILRPLLVVENMGKIK-------SLEGKNYTFQALLDHGIIELVGTEEEED 658
             V I  D GRI RPL++VEN GK K        L  + ++F   L HG++E +   EE D
Sbjct: 602  AVHIATDGGRICRPLIIVEN-GKSKVTAEHLAKLINQEWSFDDFLTHGLVEYLDVNEEND 660

Query: 659  CCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSS 718
               A        DI        TH E++   +LG   G+IP+ +H+ + R  YQ      
Sbjct: 661  SLIAL----YEDDITANPGAIVTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAM-GK 715

Query: 719  QAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAI 778
            QAIG    N   R+DTL + + YPQ+P+ +T   +           ++   +L  GQNA 
Sbjct: 716  QAIGAIAYNQFRRIDTLLYFMVYPQQPMVKTKTIE-----------LIEYDKLPAGQNAT 764

Query: 779  VAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKR--RSSDDMVNFG 836
            VAV  + GY+ ED+LV+N+ASL+RG  R + +R          +Q+K+    + D++   
Sbjct: 765  VAVMSYSGYDIEDALVLNKASLDRGFGRCQVVR-------KNTVQLKKYPNHTQDILAGM 817

Query: 837  KIQSK---IGRVDSLDDDGFPFIGANL-------------QSGDIVIG-----KYADSGA 875
            ++      I +  +L  DG   +G+ +              SGD  +G     + A+S  
Sbjct: 818  RVDENNKPIFQHQALGPDGLGEVGSRIFNGQVFANKCVPTNSGDSTLGAQQEQRAAESHR 877

Query: 876  DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLES 935
            +     K  E   + +V++S +D+ +    V LRQ R P LGDKFSS HGQKGV G +  
Sbjct: 878  EAPAFYKGPEPSYIDQVMMSVSDNDQALIKVLLRQTRRPELGDKFSSRHGQKGVCGIIVQ 937

Query: 936  QENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFAT 995
            QE+ PF   GI PDI++NPH FPSR T G+++E   GK       G+ +G   Y T F  
Sbjct: 938  QEDLPFNDSGISPDIIMNPHGFPSRMTVGKMIELISGKA------GVLNGSLEYGTCFGG 991

Query: 996  PSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTG 1055
              ++ +++ L   GFS  G + LY G TGE +++ IF GP +YQ+L HM  DK+  R  G
Sbjct: 992  SKLEDMSKILIEKGFSYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARG 1051

Query: 1056 PVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNV 1115
            P   LTRQP   R R GG++ GEMERDC+IA+GA+  L ERL   SD++++ +C KC   
Sbjct: 1052 PRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCNKC--- 1108

Query: 1116 ANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
                      G      +C  C S ++++K  +PY AKLL QEL SM I 
Sbjct: 1109 ----------GLMGYNSWCTTCKSSENVIKMTIPYAAKLLFQELLSMNIA 1148


>gi|410081580|ref|XP_003958369.1| hypothetical protein KAFR_0G02000 [Kazachstania africana CBS 2517]
 gi|372464957|emb|CCF59234.1| hypothetical protein KAFR_0G02000 [Kazachstania africana CBS 2517]
          Length = 1148

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 383/1194 (32%), Positives = 585/1194 (48%), Gaps = 156/1194 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++S+N F+   L+K   +  +TI+    DP    E   +Y  +R G+ 
Sbjct: 52   AFLKVKGLVKQHLDSFNYFVDIDLKKIIKA-NQTILS-DVDP----EFYLKYVDIRIGKK 105

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
            +         +   ++   P   RL++MTYS+ + V ++   YT+          GR   
Sbjct: 106  ST--------SSTKDYLTPPHECRLRDMTYSAPIYVDIE---YTR----------GRNII 144

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGAEKVF 205
            + K+V         IGR+P+M++S+ C + G ++ +      C  D GGYFI+ G EKV 
Sbjct: 145  MHKDVE--------IGRMPIMLRSNKCTLYGCDEAEMAKLNECPLDPGGYFIVNGTEKVI 196

Query: 206  VAQEQICLKRLWVS--NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKV-LSVYFL 262
            + QEQ+   R+ V      G   A  + +   R        SK   +   +K+ L    +
Sbjct: 197  LVQEQLSKNRIIVEADEKKGIVQASVTSSTHER-------KSKTYVVTKNDKIYLKHNSI 249

Query: 263  STEIPIWILFFALGVSSDKEIVNLIDFTC-EDCSILNILFASIHDADNKCDEFRKGRNAL 321
            S EIPI I+  A GV S+ EI+ L+   C  D S  +I   +I +A +K + + + + AL
Sbjct: 250  SEEIPIVIVLKACGVVSELEIMQLV---CGNDSSYQDIFAVNIEEA-SKFNIYTQ-QQAL 304

Query: 322  KYVDKLIKG------TTFPPG-ESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSG 374
            +Y+   +K       T    G E+    +  +L       ++KA ++  M + ++ A   
Sbjct: 305  EYIGAKVKTMRRQKLTVLQEGIEAIATTVIAHLTVEALNFREKALYMAMMTRRVVMAMHN 364

Query: 375  RRKCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKRMAKALQRDLYGDR 423
             +  D+RD   NKRLELAG+L+             + K  I    K+  +A++ D     
Sbjct: 365  PKMVDDRDYVGNKRLELAGQLISLLFEDLFKKFNSDFKASIDKVLKKPNRAMEYDAL--- 421

Query: 424  TVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTR 483
                +   + ++ +T+GL+RA STG WS    + ER +G+   L R + +  L  + R  
Sbjct: 422  ----LSINVHSNNITSGLNRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALGMMTRIS 476

Query: 484  QQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLVSTSILEPIFEQLF 542
             Q + + KV   R   PS +G +C   TP+GE CGLVKNL + T + +    EPI +  +
Sbjct: 477  SQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCY 536

Query: 543  NSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
              G+E +    S SL   + VF++G  IG  +    FVS  R  RR  ++   + I  + 
Sbjct: 537  VLGVEDINLIDSASLHLNYSVFLNGTLIGSARFPRKFVSHFRALRRSCKVSAFISIHTNS 596

Query: 603  LQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIELVGTEEE 656
             Q  V I  D GRI RPL++V N         +K L      F   L  G++E +   EE
Sbjct: 597  EQKAVHIATDGGRICRPLIIVTNGESHVKAHHLKRLLEGELVFDDFLKLGLVEYLDVNEE 656

Query: 657  EDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKH 716
             D   A       KDI+       TH E++   +LG   G+IP+ +H+ + R  YQ    
Sbjct: 657  NDSFIAL----YEKDIDQA----VTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAM- 707

Query: 717  SSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQN 776
              QAIG    N   R+DTL + + YPQ+P+ +T   +           ++   +L  GQN
Sbjct: 708  GKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIE-----------LIDYDKLPAGQN 756

Query: 777  AIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRR---SSDDMV 833
            A VAV  + GY+ ED+LV+N+ASL+RG  R E  R        K   V +R    + D++
Sbjct: 757  ATVAVMSYSGYDIEDALVLNKASLDRGFGRCETRR--------KTTTVLKRYPNHTQDII 808

Query: 834  NFGKIQSK---IGRVDSLDDDGFPFIGANLQSGDIVIGKY-------ADSGADHS----- 878
               ++  K   I +  +L  DG   +G  L SG I I K        A +GA  +     
Sbjct: 809  GGMRVDEKGEPIWQHKALGPDGLGEVGMKLDSGQIYINKSVPTNSTDAFNGAAQASYRET 868

Query: 879  -IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQE 937
             +  +  E   + +V++S +D+ +    V LRQ R P LGDKFSS HGQKGV G +  QE
Sbjct: 869  PVIYRAPEPSHIDQVMMSVSDNDQALIKVLLRQHRRPELGDKFSSRHGQKGVCGIIVKQE 928

Query: 938  NFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPS 997
            + PF  QG+VPDI++NPH FPSR T G+++E   GK       G+ +G   Y T F    
Sbjct: 929  DMPFNDQGVVPDIIMNPHGFPSRMTVGKMIELVSGKA------GVLNGSLEYGTCFGGSK 982

Query: 998  VDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPV 1057
            ++ +++ L   GF+  G + LY G TGE +++ IF GP +YQ+L HM  DK+  R  GP 
Sbjct: 983  LEDMSKILVEKGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPR 1042

Query: 1058 HPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVAN 1117
              LTRQP   R R GG++ GEMERDC+IA+GA+  L ERL   SD++++ +C KC     
Sbjct: 1043 AVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCAKC----- 1097

Query: 1118 VIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                    G      +C  C S ++++K  +PY AKLL QEL SM I  +   E
Sbjct: 1098 --------GLMGYSGWCTTCKSAENVIKMTIPYAAKLLFQELLSMNIAPRLRLE 1143


>gi|393235423|gb|EJD42978.1| DNA-directed RNA polymerase [Auricularia delicata TFB-10046 SS5]
          Length = 1129

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 375/1189 (31%), Positives = 557/1189 (46%), Gaps = 145/1189 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETI--VEPGYDPSKKGEGEW-RYASMRF 88
            +F    GLV   I+S+N F+   L     +  +    V+P +         W +Y  +R 
Sbjct: 21   AFLRVKGLVKQHIDSFNYFVDVDLNNILKANNKVTSDVDPRF---------WLKYTDIRV 71

Query: 89   GQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGR 148
            G     +P     +  D   + P   RL++ TYS+ + V VQ+                R
Sbjct: 72   G-----RPDRTDADAID-RSITPHECRLRDTTYSAPILVTVQYT---------------R 110

Query: 149  EQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG------DCDFDHGGYFIIKGAE 202
             +Y+ K+       N+ IGR+P+M++S+ C + G+ +       +C  D GGYFI+KG E
Sbjct: 111  GKYVVKK------QNVTIGRMPIMLRSNKCVLTGMNEAQLARAIECPLDPGGYFIVKGTE 164

Query: 203  KVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFL 262
            KV + QEQ+   R+ V       V   S        ++      +   K G   L    +
Sbjct: 165  KVILVQEQLSKNRIIVERDPTKGVVQASVTSSTHGGMK---TKTYVVTKKGNIYLRHNSI 221

Query: 263  STEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALK 322
              ++PI I   ALG+ SDKEI+ +     E+      +F+   +  +K   F + + AL 
Sbjct: 222  HEDVPIVIALKALGLQSDKEILLVTAGGTEE---FRSIFSPNLEEASKLGVFTR-QQALD 277

Query: 323  YVDKLIK------GTTFPPGESTEECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAY 372
            Y+   +K      G   PP E   E + T +   L       + KA F+  M + +L A 
Sbjct: 278  YIGARVKINRRVIGPRRPPWEDALEALATVILAHLPVENFDFRPKAVFVATMTRRVLMAV 337

Query: 373  SGRRKCDNRDDFRNKRLELAGELL-----------ERELKVHIAHARKRMAKALQRDLYG 421
               +  D+RD   NKRLELAG+LL             ELK  I    K+ ++  + D   
Sbjct: 338  QDEKLVDDRDYVGNKRLELAGQLLALLFEDLFKRFNTELKSSIDKVLKKPSRTSEFD--- 394

Query: 422  DRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRR 481
                + +++  D   +T G  RA STG WS    + ER +G+   L R + +  L  + R
Sbjct: 395  --AGQTLQFMGDH--ITAGFVRAISTGNWSLKRFKMER-AGVTHVLSRLSFIAALGMMTR 449

Query: 482  TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQ 540
               Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + E PI   
Sbjct: 450  ITSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVEEEPIIRL 509

Query: 541  LFNSGMEK--LADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEI 598
             F  G+E   LA  A       F V V+G  IG+ +  L FV++LR+ RR   +   V +
Sbjct: 510  AFMLGVEDVCLATGAEMYEHNNFMVHVNGLIIGLTRTPLRFVAQLRKLRRAGRISEFVSV 569

Query: 599  KRDELQSEVRIFMDAGRILRPLLVVE------NMGKIKSLEGKNYTFQALLDHGIIELVG 652
              +     V I  D GRI RPL++VE      ++  ++ L+     F + L  G++E + 
Sbjct: 570  YINHHHRAVYIACDGGRICRPLIIVERGQPLVSVEHVELLKAGKMNFDSFLKLGLVEYLD 629

Query: 653  TEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 712
              EE D      I    +DI      + TH E++   +LG   G+IP+ +H+ + R  YQ
Sbjct: 630  VNEENDS----RIALYERDIVLTGSGRTTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQ 685

Query: 713  SQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELY 772
                  QAIG    N   R+DTL + L YPQ+P+ +T   + +G              L 
Sbjct: 686  C-AMGKQAIGAIAYNQLNRIDTLLYLLVYPQKPMVKTRTIELVGYE-----------RLP 733

Query: 773  NGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDM 832
             GQNA VAV  + GY+ ED+L++N+ASL+RG  R + +R     +         R +D  
Sbjct: 734  AGQNATVAVMSYSGYDIEDALILNKASLDRGYGRCQVMRKNVTMIRKYPNGTHDRLADAP 793

Query: 833  VN-FGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHS------------- 878
             +  G +Q    R D +  DG   +G  +  GDI + K   + A+ +             
Sbjct: 794  KDENGNVQK---RYDIIQMDGIAGVGERVDPGDIYVNKQTPTNANDNSAAMDGAVAASYR 850

Query: 879  ---IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLES 935
               +  K    G + KV+LS  ++      V +RQ R P LGDKFSS HGQKGV G + +
Sbjct: 851  NTPMSYKSPVAGYIDKVMLSETENDNTLVKVLIRQTRRPELGDKFSSRHGQKGVCGLIVN 910

Query: 936  QENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFAT 995
            QE+ PF  QG+ PD ++NPH FPSR T G+++E   GK       G+ +G  RY T F  
Sbjct: 911  QEDMPFNDQGVCPDSIMNPHGFPSRMTVGKMIELISGKA------GVLTGKLRYGTAFGG 964

Query: 996  PSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTG 1055
              V+ +++ L   GFS  G + L  G TGE + + +F GP +YQ+L HM  DK+  R  G
Sbjct: 965  SKVEDMSKILIEHGFSYSGKDMLTSGITGESLEAFVFFGPIYYQKLKHMVMDKMHARARG 1024

Query: 1056 PVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNV 1115
            P   LTRQP   R R GG++ GEMERDCLI +GA   L ERL   SD +++  C  C   
Sbjct: 1025 PRATLTRQPTEGRSRDGGLRLGEMERDCLIGYGATQLLLERLMISSDKFEVCACETC--- 1081

Query: 1116 ANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
                      G      +C  C +   + K  +PY AKLL QEL +M +
Sbjct: 1082 ----------GIMGYNGWCPYCKTSQKVAKLTIPYAAKLLFQELMAMNV 1120


>gi|448527137|ref|XP_003869439.1| Ret1 protein [Candida orthopsilosis Co 90-125]
 gi|380353792|emb|CCG23304.1| Ret1 protein [Candida orthopsilosis]
          Length = 1149

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 373/1189 (31%), Positives = 579/1189 (48%), Gaps = 145/1189 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++S+N F+   L+K  ++   ++V    DP    +   +Y  +R G  
Sbjct: 42   AFLKIKGLVKQHLDSFNYFVDVDLKKILNA--NSLVLSDVDP----DFYVKYIDIRVGHK 95

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
            +   P      G  E  + P   RL+++TYS+ + V V+   YT+ R     +       
Sbjct: 96   STSPP------GTKEVILPPHECRLRDLTYSAPIYVDVE---YTRGRKIIRHY------- 139

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVF 205
                       ++ IGR+P+M++S+ C + G++        +C  D GGYFI+ G EKV 
Sbjct: 140  -----------DLEIGRMPIMLRSNKCMLDGMDDKMMAQVDECPLDPGGYFIVNGTEKVI 188

Query: 206  VAQEQICLKRLWVS--NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKV-LSVYFL 262
            + QEQ+   R+ V      G   A  + +   R        SK   I   +K+ L    +
Sbjct: 189  LVQEQLSKNRIIVEADEKKGIVQASVTSSTHER-------KSKTYVITKNDKIYLKHNSI 241

Query: 263  STEIPIWILFFALGVSSDKEIVNLI---DFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
            S +IPI I+  A GV+SD EI+ L+   D   +D  ++N   A+      K + F + + 
Sbjct: 242  SEDIPIVIVLKAAGVTSDLEILQLVCGSDPNYQDLFVVNFEEAA------KLEVFTQ-QQ 294

Query: 320  ALKYVDKLIK------GTTFPPGESTEECMNTYLFPSLHGT----KQKARFLGYMVKCLL 369
            AL Y+ K +K             +   E + T +   L       ++KA ++  M + ++
Sbjct: 295  ALLYLGKRVKTIRRAGAPKLSQLQEGIEAIATTIIAHLTVVDLQFREKALYMAMMARRVV 354

Query: 370  QAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDRTV 425
             A    +  D+RD   NKRLELAG+L+    E   K   +  +  + K L++        
Sbjct: 355  MAMHNPKMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNSDFKANIDKILKKPSRTSEFD 414

Query: 426  RPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQ 485
              +   + ++ +T GL+RA STG WS    + ER +G+   L R + +  L  + R   Q
Sbjct: 415  ALLSINIHSNNITMGLNRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALGMMTRISSQ 473

Query: 486  VQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNS 544
             + + KV   R   PS +G +C   TP+GE CGLVKNL +   ++T   E PI +     
Sbjct: 474  FEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEGPIKKLCTAL 533

Query: 545  GMEKLA--DDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
            G E +   D A+  + G F V+++G  +G  +  + FV++ RR RR  ++   V I  + 
Sbjct: 534  GCESILGLDSATLHVEGNFGVYLNGTLLGATRFPVKFVTDFRRLRRAGKVSAFVSIYTNT 593

Query: 603  LQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIELVGTEEE 656
             Q  V I  D GRI RPL++VEN         +  L    + F   L  G++E +   EE
Sbjct: 594  HQQAVHIATDGGRICRPLIIVENNKSKVEANHLAKLLNGEWEFDDFLKEGLVEYLDVNEE 653

Query: 657  EDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKH 716
             D   A       KDI +      TH E++   +LG   G+IP+ +H+ + R  YQ    
Sbjct: 654  NDSLIAL----YEKDIGENPNATVTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQC-AM 708

Query: 717  SSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQN 776
              QAIG    N   R+DTL + + YPQ+P+ +T   +           ++   +L  GQN
Sbjct: 709  GKQAIGAIAYNQFRRIDTLLYFMVYPQQPMVKTKTIE-----------LINYDKLPAGQN 757

Query: 777  AIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKR--RSSDDMVN 834
            A VAV  + GY+ ED+LV+N++SL+RG  R + +R          +Q+K+    S D+++
Sbjct: 758  ATVAVMSYSGYDIEDALVLNKSSLDRGFGRCQVVR-------KNTVQLKKYPNHSKDILS 810

Query: 835  FGKIQSK---IGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHS------------- 878
              ++      I    +L  DG   +G+ +++G +   K   + +  S             
Sbjct: 811  GMRVDENDEPIFPHQALGPDGLGEVGSKIENGQVFANKCVPTNSGDSSLGQPQQVESHRE 870

Query: 879  --IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ 936
              +  K  E   V +V++S +D+ +    V LRQ R P LGDKFSS HGQKGV G +  Q
Sbjct: 871  APLFYKGPEPSYVDQVMMSVSDNDQALIKVLLRQTRRPELGDKFSSRHGQKGVCGIIVQQ 930

Query: 937  ENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP 996
            E+ PF   GI PDI++NPH FPSR T G+++E   GK       G+ +G   Y T F   
Sbjct: 931  EDLPFNDDGISPDIIMNPHGFPSRMTVGKMIELISGKA------GVLNGSLEYGTCFGGS 984

Query: 997  SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGP 1056
             ++ +++ L   GFS  G + LY G TGE +++ IF GP +YQ+L HM  DK+  R  GP
Sbjct: 985  KLEEMSKILVEKGFSYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGP 1044

Query: 1057 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVA 1116
               LTRQP   R R GG++ GEMERDC+IA+GA+  L ERL   SD++++ +C KC    
Sbjct: 1045 RAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCNKC---- 1100

Query: 1117 NVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
                     G      +C  C S ++I+K  +PY AKLL QEL SM I 
Sbjct: 1101 ---------GLMGYNSWCTTCKSSENIIKMTIPYAAKLLFQELLSMNIA 1140


>gi|409095097|ref|ZP_11215121.1| DNA-directed RNA polymerase subunit B [Thermococcus zilligii AN1]
          Length = 1120

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 384/1195 (32%), Positives = 591/1195 (49%), Gaps = 166/1195 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            S++ E GLV   ++SYN F+  GLQ+  D FG      G  P            ++FG++
Sbjct: 20   SYWKEKGLVRQHLDSYNAFVDYGLQEVIDEFG------GVKPDIPN------LEVKFGKI 67

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             + +P F    G     ++P  AR++N+TYS+ + +++   V             G EQ 
Sbjct: 68   RVGEPVFQEAQG-QRRPLYPMDARIRNLTYSAPLFLELIPVV------------NGIEQ- 113

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDC------DFDHGGYFIIKGAEKVF 205
                    E     IG +P+M+KS +C + G+  G+         D GGYFII G+E+V 
Sbjct: 114  --------EPVEARIGELPIMLKSKICRLHGLSDGELVKLGEDPKDPGGYFIINGSERVI 165

Query: 206  VAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVD-------MSKFEDIKGGEKVLS 258
            V+ E +   R  V          + + ++ R+I ++         +   E  K G   ++
Sbjct: 166  VSIEDLAPNRTLV----------ERDERQERVIAKVFSYRHGYRALITVERRKDGILYVT 215

Query: 259  VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGR 318
            +  +S  +    +  ALG+ SD+EIV  +    +D  I  IL  ++ DA +     R   
Sbjct: 216  IPNVSKPVKFVYVMRALGLLSDREIVEAV---SDDPRIQQILLDNLEDASD----IRTQE 268

Query: 319  NALKYVDKLIKGTTFP--PGE----STEECMNTYLFPSL----HGTKQKARFLGYMVKCL 368
            +AL Y+ KL    + P  P E      E  ++  L P +       K KA +LG M   +
Sbjct: 269  DALDYIGKL----SLPGQPKEYRLRRAEHIIDNNLLPHMGVGPENRKAKAYYLGMMALKV 324

Query: 369  LQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARK----RMAKALQRDLYGDR- 423
            L+   G R  D++D + NKRL+LAG+LL+   +V      K    +M K  QR   G+R 
Sbjct: 325  LELSLGLRGEDDKDHYANKRLKLAGDLLKDLFRVAFGQLVKDMEYQMTKTYQRK--GERY 382

Query: 424  TVRPIEYYLDASI----LTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDL 479
            T + I+ ++  SI    L+  +  A +TG+W  P  RT    G+   L R N + TL  L
Sbjct: 383  TFQNIQRFVRNSIRPDVLSERIEHALATGSW--PGGRT----GVSQLLDRTNYMSTLSHL 436

Query: 480  RRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFE 539
            RR    +       +AR  H +HWG+IC   TP+G NCGLVKNL +   ++T + E    
Sbjct: 437  RRVTSPLDREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTGLPEEKV- 495

Query: 540  QLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIK 599
            +++   +  +  +      G ++V+++G  IG  +     V  ++  RR   +   + + 
Sbjct: 496  RVYLEKLGIVPIEERRPAPGLYRVYLNGVLIGTVEKGRELVERIKTDRRAGRISDVINVA 555

Query: 600  RDELQS--EVRIFMDAGRILRPLLVVENMGKIK----SLEG-KNYT--FQALLDHGIIEL 650
              E     E+ I  D GR+ RPL++VEN GK K     +EG KN T  +  L+  G+IE 
Sbjct: 556  LYEEGDVREIYINSDDGRVRRPLIIVEN-GKPKLTREHVEGIKNGTLAWSDLIRMGVIEY 614

Query: 651  VGTEEEEDCCTA---WGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHAR 707
            +  EEEE+   A   W +             + TH EL  + +LG+   ++P+  H+ A 
Sbjct: 615  LDAEEEENAYVATWPWEVTG-----------EHTHLELMPAAILGIPASLVPYPEHNAAP 663

Query: 708  RVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILP 767
            R  Y +   + Q++G    N  +R+DT  H L YPQ PL  + I   +G           
Sbjct: 664  RNTYGA-GMAKQSLGLGAANFRLRIDTRGHLLHYPQVPLVNSRIMKAVG--------FEE 714

Query: 768  RPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEM--QVK 825
            RP    GQN +VAV  + GYN ED++++N+AS+ERG+ RS   R+Y+AE + + +  Q  
Sbjct: 715  RP---AGQNFVVAVLSYHGYNMEDAVIINKASIERGLGRSTFFRTYEAE-EKRYLGGQTD 770

Query: 826  RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA-------------- 871
            R    D    G +  +  R  +LD+DG  F  + ++  D+++G+ +              
Sbjct: 771  RFEKPDPTIKGYLGDRYYR--NLDEDGIIFPESRVEGKDVLVGRTSPPRFLEEQGRLGGI 828

Query: 872  --DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGV 929
                  + S+  + +E G+V KV+++   DG     V++R +R P LGDKF+S HGQKGV
Sbjct: 829  ALQERRETSVAARPSEEGIVDKVIITETGDGTKLVKVTVRDLRIPELGDKFASRHGQKGV 888

Query: 930  LGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRY 989
            +G +  QE+ P+T  GIVPD+++NPH  PSR T GQL+EA  GK +A+L      G +  
Sbjct: 889  VGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGK-VASL-----KGRRVD 942

Query: 990  ATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKV 1049
             T F     + +  +L   GF   G E LYDG TG  + + IF+G  +YQRL HM  DK+
Sbjct: 943  GTAFIGEPEEKLRRELEELGFKHNGREILYDGITGRRLEAEIFVGVIYYQRLHHMVADKM 1002

Query: 1050 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHIC 1109
              R+ GPV  LT+QP   R R GG++FGEMERD LI HGAA  L ERL   SD  ++ +C
Sbjct: 1003 HARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLIGHGAAMLLIERLLEESDKTEVWVC 1062

Query: 1110 RKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
              C ++A      +   R+ R  YC +C   + I K  + Y  KLL  EL +M I
Sbjct: 1063 ENCGHIA------LEDKRRDR-VYCPVCGEEERISKVEISYAFKLLLDELKAMVI 1110


>gi|354546082|emb|CCE42811.1| hypothetical protein CPAR2_204540 [Candida parapsilosis]
          Length = 1149

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 371/1181 (31%), Positives = 570/1181 (48%), Gaps = 129/1181 (10%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++S+N F+   L+K   +   ++V    DP    +   +Y  +R G  
Sbjct: 42   AFLKIKGLVKQHLDSFNYFVDVDLKKILKA--NSLVLSDVDP----DFYVKYIDIRVGHK 95

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
            +   P      G  E  + P   RL+++TYS+ + V V+   YT+ R     +       
Sbjct: 96   STSPP------GTKEVILPPHECRLRDLTYSAPIYVDVE---YTRGRKIIRHY------- 139

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVF 205
                       ++ IGR+P+M++S+ C + G++        +C  D GGYFI+ G EKV 
Sbjct: 140  -----------DLEIGRMPIMLRSNKCMLDGMDDKMMAQVDECPLDPGGYFIVNGTEKVI 188

Query: 206  VAQEQICLKRLWVS--NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKV-LSVYFL 262
            + QEQ+   R+ V      G   A  + +   R        SK   I   +K+ L    +
Sbjct: 189  LVQEQLSKNRIIVEADEKKGIVQASVTSSTHER-------KSKTYVITKNDKIYLKHNSI 241

Query: 263  STEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALK 322
            S +IPI I+  A GV+SD EI+ L+   C   S    LF    +   K + F + + AL 
Sbjct: 242  SEDIPIVIVLKAAGVTSDLEILQLV---CGSNSNYQDLFVVNFEEAAKLEVFTQ-QQALL 297

Query: 323  YVDKLIK------GTTFPPGESTEECMNTYLFPSLHGT----KQKARFLGYMVKCLLQAY 372
            Y+ K +K             +   E + T +   L       ++KA ++  M + ++ A 
Sbjct: 298  YLGKRVKTIRRAGAPKLSQLQEGIEAIATTIIAHLTVVDLQFREKALYMAVMARRVIMAM 357

Query: 373  SGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDRTVRPI 428
               +  D+RD   NKRLELAG+L+    E   K   +  +  + K L++          +
Sbjct: 358  HNPKMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNSDFKANIDKILKKPSRTSEFDALL 417

Query: 429  EYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQY 488
               + ++ +T GL+RA STG WS    + ER +G+   L R + +  L  + R   Q + 
Sbjct: 418  SINIHSNNITMGLNRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALGMMTRISSQFEK 476

Query: 489  TGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGME 547
            + KV   R   PS +G +C   TP+GE CGLVKNL +   ++T   E PI +     G E
Sbjct: 477  SRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEENPIKKLCTALGCE 536

Query: 548  KLA--DDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQS 605
             +   D A+  + G F ++++G  +G  +  + FV++ RR RR  ++   V I  +  Q 
Sbjct: 537  SILGLDSATLHVEGNFGIYLNGTLLGTTRFPVKFVTDFRRLRRAGKVSAFVSIYTNSHQQ 596

Query: 606  EVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDC 659
             V I  D GRI RPL++VEN         +  L    + F   L  G++E +   EE D 
Sbjct: 597  AVHIATDGGRICRPLIIVENNKSKVEAKHLTKLLNGEWEFDDFLKEGLVEYLDVNEENDS 656

Query: 660  CTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQ 719
              A       KDI +      TH E++   +LG   G+IP+ +H+ + R  YQ      Q
Sbjct: 657  LIAL----YEKDIGENPNATVTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQC-AMGKQ 711

Query: 720  AIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIV 779
            AIG    N   R+DTL + + YPQ+P+ +T   +           ++   +L  GQNA V
Sbjct: 712  AIGAIAYNQFRRIDTLLYFMVYPQQPMVKTKTIE-----------LINYDKLPAGQNATV 760

Query: 780  AVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQ 839
            AV  + GY+ ED+LV+N++SL+RG  R + +R    ++       K   S   V+  +  
Sbjct: 761  AVMSYSGYDIEDALVLNKSSLDRGFGRCQVVRKNTVQLKKYPNHTKDILSGMRVD--END 818

Query: 840  SKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHS---------------IKLKHT 884
              I    +L  DG   +G+ +++G +   K   + +  S               +  K  
Sbjct: 819  EPIFPHRALGPDGLGEVGSRIENGQVYANKCVPTNSGDSSLGQPQQVENHREAPLFYKGP 878

Query: 885  ERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQ 944
            E   V +V++S +D+ +    V LRQ R P LGDKFSS HGQKGV G +  QE+ PF   
Sbjct: 879  EPSYVDQVMMSVSDNDQALIKVLLRQTRRPELGDKFSSRHGQKGVCGIIVQQEDLPFNDD 938

Query: 945  GIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQ 1004
            GI PDI++NPH FPSR T G+++E   GK       G+ +G   Y T F    ++ +++ 
Sbjct: 939  GISPDIIMNPHGFPSRMTVGKMIELISGKA------GVLNGSLEYGTCFGGSKLEEMSKI 992

Query: 1005 LHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQP 1064
            L   GFS  G + LY G TGE +++ IF GP +YQ+L HM  DK+  R  GP   LTRQP
Sbjct: 993  LVEKGFSYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAVLTRQP 1052

Query: 1065 VADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVG 1124
               R R GG++ GEMERDC+IA+GA+  L ERL   SD++++ +C KC            
Sbjct: 1053 TEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCNKC------------ 1100

Query: 1125 GGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
             G      +C  C S ++I+K  +PY AKLL QEL SM I 
Sbjct: 1101 -GLMGYNSWCTTCKSAENIIKMTIPYAAKLLFQELLSMNIA 1140


>gi|254584222|ref|XP_002497679.1| ZYRO0F11066p [Zygosaccharomyces rouxii]
 gi|238940572|emb|CAR28746.1| ZYRO0F11066p [Zygosaccharomyces rouxii]
          Length = 1143

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 376/1200 (31%), Positives = 581/1200 (48%), Gaps = 168/1200 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++S+N F+   L+K   +    ++    DP    E   +Y  +R GQ 
Sbjct: 47   AFLKVKGLVKQHLDSFNYFVDVDLKKIIKA--NQLILSDVDP----EFYLKYVDIRVGQR 100

Query: 92   TLDKPSFFAGNGGDEHDMFPRH-ARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
            +         N   +  + P H  RL++MTYS+ + V ++   YT+          GR  
Sbjct: 101  S---------NASSKDYLTPPHECRLRDMTYSAPIYVDIE---YTR----------GRNI 138

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKV 204
             + K+V         IGR+P+M++S+ C +   ++       +C  D GGYFI+ G EKV
Sbjct: 139  IMHKDVE--------IGRMPIMLRSNKCILHNSDEKTMARLNECPLDPGGYFIVNGTEKV 190

Query: 205  FVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLS----VY 260
             + QEQ+   R+ V            E    + IV+    S   + K    V++    +Y
Sbjct: 191  ILVQEQLSKNRIIV------------EADEKKAIVQASVTSSTHERKSKTYVVTKNDKIY 238

Query: 261  F----LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRK 316
                 ++ E+PI ++  A G+ SD E++ L+   C + S    +FA   +  +K   + +
Sbjct: 239  LKHNSIAEEVPIVVVLKACGIVSDLEVMQLV---CGNDSSYQDIFAVNLEEASKLGLYTQ 295

Query: 317  GRNALKYVDKLIKG------TTFPPG-ESTEECMNTYLFPSLHGTKQKARFLGYMVKCLL 369
             + AL+Y+   +K       +    G E+    +  +L  +    ++KA ++  M + ++
Sbjct: 296  -QQALEYIGSKVKTVRRQKLSVLQEGIEAIATTVIAHLTVAALDFREKALYIAMMTRRVV 354

Query: 370  QAYSGRRKCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKRMAKALQRD 418
             A    +  D+RD   NKRLELAG+L+             + K  I    K+  +A++ D
Sbjct: 355  MAMQNYKMVDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFKASIDKVLKKPNRAMEYD 414

Query: 419  LYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVD 478
                     +   + ++ +T+GLSRA STG WS    + ER +G+   L R + +  L  
Sbjct: 415  AL-------LSINVHSNNITSGLSRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALGM 466

Query: 479  LRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLVSTSILEPI 537
            + R   Q + + KV   R   PS +G +C   TP+GE CGLVKNL + T + +    EPI
Sbjct: 467  MTRISSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPI 526

Query: 538  FEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVE 597
             +  F  G+E +    S SL   + V+++G  IG  K  + FVS+ R  RR  ++   + 
Sbjct: 527  KKLCFILGVEDITLIDSASLHLHYGVYLNGTLIGTTKFPVKFVSQFRNLRRSGKISEFIS 586

Query: 598  IKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGIIEL 650
            I  +     V I  D GRI RPL++V N GK       +K L      F   L  G++E 
Sbjct: 587  IYTNSHHKAVHIATDGGRICRPLIIVSN-GKSRVTSEHLKELLEGRLVFDDFLKLGLVEY 645

Query: 651  VGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVL 710
            +   EE D   A          E     + TH E++   +LG   G+IP+ +H+ + R  
Sbjct: 646  LDVNEENDSFIAL--------YEQDIAPEITHMEIEPFTVLGACAGLIPYPHHNQSPRNT 697

Query: 711  YQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPE 770
            YQ      QAIG    N   R+DTL + + YPQ+P+ +T   +           ++   +
Sbjct: 698  YQC-AMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIE-----------LIDYDK 745

Query: 771  LYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKR--RS 828
            L  GQNA VA+  + GY+ ED+LV+N++S++RG  R E  R   A        +KR    
Sbjct: 746  LPAGQNATVAIMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTA-------VLKRYPNH 798

Query: 829  SDDMVNFGKIQSK---IGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHT- 884
            + D++   ++      I +  SL  DG   +G  L SG I I K   + A   + L  T 
Sbjct: 799  TQDIIGGMRVNENGEPIWQHKSLGPDGLGEVGMKLDSGQIYINKSVPTNASEGV-LTQTQ 857

Query: 885  -------------ERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLG 931
                         E   + +V++S +D+ +    V LRQ R P LGDKFSS HGQKGV G
Sbjct: 858  SQYRETPVIYRAPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCG 917

Query: 932  FLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYAT 991
             +  QE+ PF+ QG+VPDI++NPH FPSR T G+++E   GK       G+ +G   Y T
Sbjct: 918  IIVQQEDMPFSDQGVVPDIIMNPHGFPSRMTVGKMIELISGKA------GVMNGSLEYGT 971

Query: 992  PFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKF 1051
             F    ++ +++ L   GF+  G + LY G TGE +++ IF GP +YQ+L HM  DK+  
Sbjct: 972  CFGGSKLEDMSQILVDNGFNYSGKDMLYSGVTGECLQAYIFFGPIYYQKLKHMVLDKMHA 1031

Query: 1052 RNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRK 1111
            R  GP   LTRQP   R R GG++ GEMERDC+IA+GA+  L ERL T SD++++ +C K
Sbjct: 1032 RARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMTSSDAFEVEVCEK 1091

Query: 1112 CKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
            C             G      +C  C S + I K ++PY AKLL QEL SM I  +   E
Sbjct: 1092 C-------------GLMGYSGWCTTCRSAEHINKMSIPYAAKLLFQELLSMNIAPRLRLE 1138


>gi|195333588|ref|XP_002033472.1| GM21328 [Drosophila sechellia]
 gi|195582601|ref|XP_002081115.1| GD10835 [Drosophila simulans]
 gi|194125442|gb|EDW47485.1| GM21328 [Drosophila sechellia]
 gi|194193124|gb|EDX06700.1| GD10835 [Drosophila simulans]
          Length = 1137

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 377/1198 (31%), Positives = 572/1198 (47%), Gaps = 152/1198 (12%)

Query: 28   KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMR 87
            K   +F    GLV   I+S+N FI   ++K   +    +V  G DP        +Y  +R
Sbjct: 36   KLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVKA--NELVTSGADPL----FYLKYLDVR 89

Query: 88   FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
             G+  +D   F        H+      RL++ TYS+ + V +++   TQ+          
Sbjct: 90   VGKPDIDD-GFNITKATTPHE-----CRLRDTTYSAPITVDIEYTRGTQR---------- 133

Query: 148  REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGA 201
                I++        N++IGR+P+M++   C + G  +       +C  D GGYF+++G 
Sbjct: 134  ----IKR-------NNLLIGRMPLMLRCSNCALTGKSEFELSKLNECPLDPGGYFVVRGQ 182

Query: 202  EKVFVAQEQICLKRLWVSNSMGWT---VAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLS 258
            EKV + QEQ+   ++   +  G     V   +  K++R +V    +SK      G+  L 
Sbjct: 183  EKVILIQEQLSWNKMLTEDFNGVVQCQVTSSTHEKKSRTLV----LSKH-----GKYYLK 233

Query: 259  VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGR 318
               ++ +IPI ++F ALGV SD+EI +LI     D    N   AS+ DA N    F + R
Sbjct: 234  HNSMTDDIPIVVIFKALGVVSDQEIQSLIGL---DSKSQNRFGASLIDAYN-LKVFTQQR 289

Query: 319  NALKY------VDKLIKGTTFPPGESTEECMNTYLFPSL----HGTKQKARFLGYMVKCL 368
             AL+Y      V +    TT  P E   E + T +   +       + KA ++  MV+ +
Sbjct: 290  -ALEYMGSKLVVKRFQSATTKTPSEEARELLLTTILAHVPVDNFNLQMKAIYVSMMVRRV 348

Query: 369  LQAYSGRRKCDNRDDFRNKRLELAGELLER-----------ELKVHIAHARKRMAKALQR 417
            + A   +   D+RD + NKRLELAG LL             ELK  IA       KA Q 
Sbjct: 349  MAAELDKTLFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELKT-IADKNIPKVKAAQF 407

Query: 418  DLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLV 477
            D+           ++ A+ +T GL  A S+G W+    + ER +G+   L R + +  L 
Sbjct: 408  DVVK---------HMRAAQITAGLESAISSGNWTIKRFKMER-AGVTQVLSRLSYISALG 457

Query: 478  DLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-P 536
             + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + E P
Sbjct: 458  MMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERP 517

Query: 537  IFEQLFNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPT 594
            +    FN+G+E + + +   +     F VF++G+ +G+  +    V  LR  RR+  + +
Sbjct: 518  VMIVAFNAGVEDIREVSGNPINNPNVFLVFINGNVLGLTLNHKHLVRNLRYMRRKGRMGS 577

Query: 595  QVEIKRDELQSEVRIFMDAGRILRPLLVVEN---MGKIKSLEGKNY---TFQALLDHGII 648
             V +     Q  + I  D GR+ RP ++VEN   + K   L+  N     F   L  G+I
Sbjct: 578  YVSVHTSYTQRCIYIHTDGGRLCRPYVIVENRRPLVKQHHLDELNRGIRKFDDFLLDGLI 637

Query: 649  ELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARR 708
            E +   EE D   AW         ED+   + TH E++   LLG+  G++P+ +H+ + R
Sbjct: 638  EYLDVNEENDSFIAWN--------EDQIEDRTTHLEIEPFTLLGVCAGLVPYPHHNQSPR 689

Query: 709  VLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPR 768
              YQ      QA+G    N   R+D+L + L YP  P+ ++   +           +   
Sbjct: 690  NTYQC-AMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIE-----------LTNF 737

Query: 769  PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRS 828
             +L  GQNA VAV  + GY+ ED+L++N+AS++RG  R    ++ K  V     Q   R 
Sbjct: 738  DKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRI 797

Query: 829  SDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHS---------- 878
               M +       I + D LD DG    G  +Q+  I+I K   +    +          
Sbjct: 798  MGPMKD-ALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVP 856

Query: 879  -----IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
                 I  K  E   +++V++S+N +      + LRQ R P +GDKFSS HGQKGV G +
Sbjct: 857  YTAVPISYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLI 916

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
              QE+ PF   GI PD+++NPH FPSR T G+ LE   GK       G+  G   Y T F
Sbjct: 917  VEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKA------GLLEGKFHYGTAF 970

Query: 994  ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
                V+ I  +L R GF+  G +  Y G TG  + + I+ GP +YQ+L HM +DK+  R 
Sbjct: 971  GGSKVEDIQAELERHGFNYVGKDFFYSGITGSPLEAYIYSGPVYYQKLKHMVQDKMHARA 1030

Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
             GP   LTRQP   R R GG++ GEMERDCLI++GA+  + ERL   SD++++ +CR C 
Sbjct: 1031 RGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTC- 1089

Query: 1114 NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                        GR     +C  C S  ++ K ++PY  KLL QEL SM +  K   E
Sbjct: 1090 ------------GRMAYCSWCHFCQSSANVSKISMPYACKLLFQELTSMNVVPKMILE 1135


>gi|194883820|ref|XP_001975995.1| GG20240 [Drosophila erecta]
 gi|190659182|gb|EDV56395.1| GG20240 [Drosophila erecta]
          Length = 1137

 Score =  508 bits (1307), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 378/1198 (31%), Positives = 573/1198 (47%), Gaps = 152/1198 (12%)

Query: 28   KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMR 87
            K   +F    GLV   I+S+N FI   ++K   +    +V  G DP        +Y  +R
Sbjct: 36   KLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVKA--NELVTSGADPL----FYLKYLDVR 89

Query: 88   FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
             G+  +D+  F        H+      RL++ TYS+ + V +++   TQ+          
Sbjct: 90   VGKPDIDE-GFNITKATTPHE-----CRLRDTTYSAPITVDIEYTRGTQR---------- 133

Query: 148  REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGA 201
                I++        N++IGR+P+M++   C + G  +       +C  D GGYF+++G 
Sbjct: 134  ----IKR-------NNLLIGRMPLMLRCSNCALTGKSEFELSKLNECPLDPGGYFVVRGQ 182

Query: 202  EKVFVAQEQICLKRLWVSNSMGWT---VAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLS 258
            EKV + QEQ+   ++   +  G     V   +  K++R +V    +SK      G+  L 
Sbjct: 183  EKVILIQEQLSWNKMLTEDFNGVVQCQVTSSTHEKKSRTLV----LSKH-----GKYYLK 233

Query: 259  VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGR 318
               ++ +IPI ++F ALGV SD+EI +LI     D    N   AS+ DA N    F + R
Sbjct: 234  HNSMTDDIPIVVIFKALGVVSDQEIQSLIGI---DSKSQNRFGASLLDAYN-LKVFTQQR 289

Query: 319  NALKY------VDKLIKGTTFPPGESTEECMNTYLFPSL----HGTKQKARFLGYMVKCL 368
             AL+Y      V +    TT  P E   E + T +   +       + KA ++  MV+ +
Sbjct: 290  -ALEYMGSKLVVKRFQSATTKTPSEEARELLLTTILAHVPVDNFNLQMKAIYVSLMVRRV 348

Query: 369  LQAYSGRRKCDNRDDFRNKRLELAGELLER-----------ELKVHIAHARKRMAKALQR 417
            + A   +   D+RD + NKRLELAG LL             ELK  IA       KA Q 
Sbjct: 349  MAAELDKTLFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELKT-IADKNIPKVKAAQF 407

Query: 418  DLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLV 477
            D+           ++ A+ +T GL  A S+G W+    + ER +G+   L R + +  L 
Sbjct: 408  DVVK---------HMRAAQITAGLESAISSGNWTIKRFKMER-AGVTQVLSRLSYISALG 457

Query: 478  DLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-P 536
             + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + E P
Sbjct: 458  MMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERP 517

Query: 537  IFEQLFNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPT 594
            +    FN+G+E + + +   +     F VF++G+ +G+  +    V  LR  RR+  + +
Sbjct: 518  VMIVAFNAGVEDIREVSGNPINNPNVFLVFINGNVLGLTLNHKHLVRNLRYMRRKGRMGS 577

Query: 595  QVEIKRDELQSEVRIFMDAGRILRPLLVVEN---MGKIKSLEGKNY---TFQALLDHGII 648
             V +     Q  + I  D GR+ RP ++VEN   + K   L+  N     F   L  G+I
Sbjct: 578  YVSVHTSYTQRCIYIHTDGGRLCRPYVIVENRRPLVKQHHLDELNRGIRKFDDFLLDGLI 637

Query: 649  ELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARR 708
            E +   EE D   AW         ED+   + TH E++   LLG+  G++P+ +H+ + R
Sbjct: 638  EYLDVNEENDSFIAWN--------EDQIEDRTTHLEIEPFTLLGVCAGLVPYPHHNQSPR 689

Query: 709  VLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPR 768
              YQ      QA+G    N   R+D+L + L YP  P+ ++   +           +   
Sbjct: 690  NTYQC-AMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIE-----------LTNF 737

Query: 769  PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRS 828
             +L  GQNA VAV  + GY+ ED+L++N+AS++RG  R    ++ K  V     Q   R 
Sbjct: 738  DKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRI 797

Query: 829  SDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHS---------- 878
               M +       I + D LD DG    G  +Q+  I+I K   +    +          
Sbjct: 798  MGPMKD-ALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVP 856

Query: 879  -----IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
                 I  K  E   V++V++S+N +      + LRQ R P +GDKFSS HGQKGV G +
Sbjct: 857  YTAVPISYKGPEPSYVERVMVSANAEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLI 916

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
              QE+ PF   GI PD+++NPH FPSR T G+ LE   GK       G+  G   Y T F
Sbjct: 917  VEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKA------GLLEGKFHYGTAF 970

Query: 994  ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
                V+ I  +L R GF+  G +  Y G TG  + + I+ GP +YQ+L HM +DK+  R 
Sbjct: 971  GGSKVEDIQAELERHGFNYVGKDFFYSGITGAPLEAYIYSGPVYYQKLKHMVQDKMHARA 1030

Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
             GP   LTRQP   R R GG++ GEMERDCLI++GA+  + ERL   SD++++ +CR C 
Sbjct: 1031 RGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTC- 1089

Query: 1114 NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                        GR     +C  C S  ++ K ++PY  KLL QEL SM +  K   E
Sbjct: 1090 ------------GRLAYCSWCHFCQSSANVSKISMPYACKLLFQELTSMNVVPKMILE 1135


>gi|21464338|gb|AAM51972.1| LD14594p [Drosophila melanogaster]
          Length = 1146

 Score =  508 bits (1307), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 377/1198 (31%), Positives = 572/1198 (47%), Gaps = 152/1198 (12%)

Query: 28   KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMR 87
            K   +F    GLV   I+S+N FI   ++K   +    +V  G DP        +Y  +R
Sbjct: 45   KLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVKA--NELVTSGADPL----FYLKYLDVR 98

Query: 88   FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
             G+  +D   F        H+      RL++ TYS+ + V +++   TQ+          
Sbjct: 99   VGKPDIDD-GFNITKATTPHE-----CRLRDTTYSAPITVDIEYTRGTQR---------- 142

Query: 148  REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGA 201
                I++        N++IGR+P+M++   C + G  +       +C  D GGYF+++G 
Sbjct: 143  ----IKR-------NNLLIGRMPLMLRCSNCALTGKSEFELSKLNECPLDPGGYFVVRGQ 191

Query: 202  EKVFVAQEQICLKRLWVSNSMGWT---VAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLS 258
            EKV + QEQ+   ++   +  G     V   +  K++R +V    +SK      G+  L 
Sbjct: 192  EKVILIQEQLSWNKMLTEDFNGVVQCQVTSSTHEKKSRTLV----LSKH-----GKYYLK 242

Query: 259  VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGR 318
               ++ +IPI ++F ALGV SD+EI +LI     D    N   AS+ DA N    F + R
Sbjct: 243  HNSMTDDIPIVVIFKALGVVSDQEIQSLIGI---DSKSQNRFGASLIDAYN-LKVFTQQR 298

Query: 319  NALKY------VDKLIKGTTFPPGESTEECMNTYLFPSL----HGTKQKARFLGYMVKCL 368
             AL+Y      V +    TT  P E   E + T +   +       + KA ++  MV+ +
Sbjct: 299  -ALEYMGSKLVVKRFQSATTKTPSEEARELLLTTILAHVPVDNFNLQMKAIYVSMMVRRV 357

Query: 369  LQAYSGRRKCDNRDDFRNKRLELAGELLER-----------ELKVHIAHARKRMAKALQR 417
            + A   +   D+RD + NKRLELAG LL             ELK  IA       KA Q 
Sbjct: 358  MAAELDKTLFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELKT-IADKNIPKVKAAQF 416

Query: 418  DLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLV 477
            D+           ++ A+ +T GL  A S+G W+    + ER +G+   L R + +  L 
Sbjct: 417  DVVK---------HMRAAQITAGLESAISSGNWTIKRFKMER-AGVTQVLSRLSYISALG 466

Query: 478  DLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-P 536
             + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + E P
Sbjct: 467  MMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERP 526

Query: 537  IFEQLFNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPT 594
            +    FN+G+E + + +   +     F VF++G+ +G+  +    V  LR  RR+  + +
Sbjct: 527  VMIVAFNAGVEDIREVSGNPINNPNVFLVFINGNVLGLTLNHKHLVRNLRYMRRKGRMGS 586

Query: 595  QVEIKRDELQSEVRIFMDAGRILRPLLVVEN---MGKIKSLEGKNY---TFQALLDHGII 648
             V +     Q  + I  D GR+ RP ++VEN   + K   L+  N     F   L  G+I
Sbjct: 587  YVSVHTSYTQRCIYIHTDGGRLCRPYVIVENRRPLVKQHHLDELNRGIRKFDDFLLDGLI 646

Query: 649  ELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARR 708
            E +   EE D   AW         ED+   + TH E++   LLG+  G++P+ +H+ + R
Sbjct: 647  EYLDVNEENDSFIAWN--------EDQIEDRTTHLEIEPFTLLGVCAGLVPYPHHNQSPR 698

Query: 709  VLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPR 768
              YQ      QA+G    N   R+D+L + L YP  P+ ++   +           +   
Sbjct: 699  NTYQC-AMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIE-----------LTNF 746

Query: 769  PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRS 828
             +L  GQNA VAV  + GY+ ED+L++N+AS++RG  R    ++ K  V     Q   R 
Sbjct: 747  DKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRI 806

Query: 829  SDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHS---------- 878
               M +       I + D LD DG    G  +Q+  I+I K   +    +          
Sbjct: 807  MGPMKD-ALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVP 865

Query: 879  -----IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
                 I  K  E   +++V++S+N +      + LRQ R P +GDKFSS HGQKGV G +
Sbjct: 866  YTAVPISYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLI 925

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
              QE+ PF   GI PD+++NPH FPSR T G+ LE   GK       G+  G   Y T F
Sbjct: 926  VEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKA------GLLEGKFHYGTAF 979

Query: 994  ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
                V+ I  +L R GF+  G +  Y G TG  + + I+ GP +YQ+L HM +DK+  R 
Sbjct: 980  GGSKVEDIQAELERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKHMVQDKMHARA 1039

Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
             GP   LTRQP   R R GG++ GEMERDCLI++GA+  + ERL   SD++++ +CR C 
Sbjct: 1040 RGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTC- 1098

Query: 1114 NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                        GR     +C  C S  ++ K ++PY  KLL QEL SM +  K   E
Sbjct: 1099 ------------GRMAYCSWCHFCQSSANVSKISMPYACKLLFQELTSMNVVPKMILE 1144


>gi|195485554|ref|XP_002091138.1| GE12399 [Drosophila yakuba]
 gi|194177239|gb|EDW90850.1| GE12399 [Drosophila yakuba]
          Length = 1137

 Score =  508 bits (1307), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 376/1198 (31%), Positives = 570/1198 (47%), Gaps = 152/1198 (12%)

Query: 28   KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMR 87
            K   +F    GLV   I+S+N FI   ++K   +    +V  G DP        +Y  +R
Sbjct: 36   KLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVKA--NELVTSGADPL----FYLKYLDVR 89

Query: 88   FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
             G+  +D+  F        H+      RL++ TYS+ + V +++   TQ+          
Sbjct: 90   VGKPDIDE-GFNITKATTPHE-----CRLRDTTYSAPITVDIEYTRGTQR---------- 133

Query: 148  REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGA 201
                I++        N++IGR+P+M++   C + G  +       +C  D GGYF+++G 
Sbjct: 134  ----IKR-------NNLLIGRMPLMLRCSNCALTGKSEFELSKLNECPLDPGGYFVVRGQ 182

Query: 202  EKVFVAQEQICLKRLWVSNSMGWT---VAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLS 258
            EKV + QEQ+   ++   +  G     V   +  K++R +V    +SK      G+  L 
Sbjct: 183  EKVILIQEQLSWNKMLTEDFNGVVQCQVTSSTHEKKSRTLV----LSKH-----GKYYLK 233

Query: 259  VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGR 318
               ++ +IPI ++F ALGV SD+EI +LI     D    N   AS+ DA N    F + R
Sbjct: 234  HNSMTDDIPIVVIFKALGVVSDQEIQSLIGI---DSKSQNRFGASLLDAYN-LKVFTQQR 289

Query: 319  NALKY------VDKLIKGTTFPPGESTEECMNTYLFPSL----HGTKQKARFLGYMVKCL 368
             AL+Y      V +    TT  P E   E + T +   +       + KA ++  MV+ +
Sbjct: 290  -ALEYMGSKLVVKRFQSATTKTPSEEARELLLTTILAHVPVDNFNLQMKAIYVSLMVRRV 348

Query: 369  LQAYSGRRKCDNRDDFRNKRLELAGELLER-----------ELKVHIAHARKRMAKALQR 417
            + A   +   D+RD + NKRLELAG LL             ELK  IA       KA Q 
Sbjct: 349  MAAELDKTLFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELKT-IADKNIPKVKAAQF 407

Query: 418  DLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLV 477
            D+           ++ A+ +T GL  A S+G W+    + ER +G+   L R + +  L 
Sbjct: 408  DVVK---------HMRAAQITAGLESAISSGNWTIKRFKMER-AGVTQVLSRLSYISALG 457

Query: 478  DLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-P 536
             + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + E P
Sbjct: 458  MMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERP 517

Query: 537  IFEQLFNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPT 594
            +    FN+G+E + + +   +     F VF++G+ +G+  +    V  LR  RR+  + +
Sbjct: 518  VMIVAFNAGVEDIREVSGNPINNPNVFLVFINGNVLGLTLNHKHLVRNLRYMRRKGRMGS 577

Query: 595  QVEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGII 648
             V +     Q  + I  D GR+ RP ++VEN         +  L      F   L  G+I
Sbjct: 578  YVSVHTSYTQRCIYIHTDGGRLCRPYVIVENRRPLVKQHHLNELNRGIRKFDDFLLDGLI 637

Query: 649  ELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARR 708
            E +   EE D   AW         ED+   + TH E++   LLG+  G++P+ +H+ + R
Sbjct: 638  EYLDVNEENDSFIAWN--------EDQIEDRTTHLEIEPFTLLGVCAGLVPYPHHNQSPR 689

Query: 709  VLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPR 768
              YQ      QA+G    N   R+D+L + L YP  P+ ++   +           +   
Sbjct: 690  NTYQC-AMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIE-----------LTNF 737

Query: 769  PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRS 828
             +L  GQNA VAV  + GY+ ED+L++N+AS++RG  R    ++ K  V     Q   R 
Sbjct: 738  DKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRI 797

Query: 829  SDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHS---------- 878
               M +       I + D LD DG    G  +Q+  I+I K   +    +          
Sbjct: 798  MGPMKD-ALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVP 856

Query: 879  -----IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
                 I  K  E   V++V++S+N +      + LRQ R P +GDKFSS HGQKGV G +
Sbjct: 857  YTAVPISYKGPEPSYVERVMVSANSEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLI 916

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
              QE+ PF   GI PD+++NPH FPSR T G+ LE   GK       G+  G   Y T F
Sbjct: 917  VEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKA------GLLEGKFHYGTAF 970

Query: 994  ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
                V+ I  +L R GF+  G +  Y G TG  + + I+ GP +YQ+L HM +DK+  R 
Sbjct: 971  GGSKVEDIQAELERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKHMVQDKMHARA 1030

Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
             GP   LTRQP   R R GG++ GEMERDCLI++GA+  + ERL   SD++++ +CR C 
Sbjct: 1031 RGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTC- 1089

Query: 1114 NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                        GR     +C  C S  ++ K ++PY  KLL QEL SM +  K   E
Sbjct: 1090 ------------GRLAYCSWCHFCQSSANVSKISMPYACKLLFQELTSMNVVPKMILE 1135


>gi|365986765|ref|XP_003670214.1| hypothetical protein NDAI_0E01550 [Naumovozyma dairenensis CBS 421]
 gi|343768984|emb|CCD24971.1| hypothetical protein NDAI_0E01550 [Naumovozyma dairenensis CBS 421]
          Length = 1154

 Score =  508 bits (1307), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 378/1193 (31%), Positives = 580/1193 (48%), Gaps = 153/1193 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++S+N F+   L+K   +    ++    DP    E   +Y  +R G+ 
Sbjct: 56   AFLKVKGLVKQHLDSFNYFVDVDLKKIIKA--NQLILSDVDP----EFYLKYVDIRVGKK 109

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
            +         +   ++   P   RL++MTYS+ + V ++   YT+          GR   
Sbjct: 110  ST--------SSARDYLTPPHECRLRDMTYSAPIYVDIE---YTR----------GRNII 148

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVF 205
            + K+V         IGR+P+M++S+ C + G ++       +C  D GGYFI+ G EKV 
Sbjct: 149  MHKDVE--------IGRMPIMLRSNKCTLYGADEKQMAKLNECPLDPGGYFIVNGTEKVI 200

Query: 206  VAQEQICLKRLWVS--NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLS 263
            + QEQ+   R+ V      G   A  + +   R          +   K G+  L    ++
Sbjct: 201  LVQEQLSKNRIIVEADEKKGIVQASVTSSTHER------KSKTYVITKNGKIYLKHNSIA 254

Query: 264  TEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKY 323
             EIPI I+  A G+ SD EI+ L+   C + S    +FA   +   K + + + + AL++
Sbjct: 255  EEIPIVIVLKACGIVSDLEIMQLV---CGNDSSYQDIFAVNLEEAAKLNLYTQ-QQALEF 310

Query: 324  VDKLIKG------TTFPPG-ESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRR 376
            +   +K       +    G E+    +  +L       ++KA ++  M + ++ A    +
Sbjct: 311  IGAKVKTMRRQKLSILQEGIEAIATTVVAHLTVEALDFREKALYMAMMTRRVVMAIHNPK 370

Query: 377  KCDNRDDFRNKRLELAGE----LLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYL 432
              D+RD   NKRLELAG+    L E   K   +  +  + K L++        R +EY  
Sbjct: 371  MVDDRDYVGNKRLELAGQMVSLLFEDLFKKFNSDFKATIDKVLEK------PNRAMEYDA 424

Query: 433  DASI------LTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
              SI      +T+GL+RA STG WS    + ER +G+   L R + +  L  + R   Q 
Sbjct: 425  LLSINVHSNNITSGLNRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALGMMTRISSQF 483

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLVSTSILEPIFEQLFNSG 545
            + + KV   R   PS +G +C   TP+GE CGLVKNL + T + S    EPI    +  G
Sbjct: 484  EKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITSDDEEEPIKRVCYVLG 543

Query: 546  MEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQS 605
            +E ++   S SL   F V+++G  IG  +  + FVS+ R  RR  ++   + I  +  Q 
Sbjct: 544  VEDISLIDSASLHLNFGVYLNGTLIGTTRFPIKFVSQFRHLRRTGKVSEFISIYTNSHQK 603

Query: 606  EVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGIIELVGTEEEED 658
             V I  D GRI RPL++V N GK       ++SL      F   L  G++E +   EE D
Sbjct: 604  AVHIATDGGRICRPLIIVTN-GKSHVTADHLRSLLEGKLVFDDFLKLGLVEYLDVNEEND 662

Query: 659  CCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSS 718
               A       KDI     +  TH E++   +LG   G+IP+ +H+ + R  YQ      
Sbjct: 663  SFIAL----YEKDIN----VASTHMEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAM-GK 713

Query: 719  QAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAI 778
            QAIG    N   R+DTL + + YPQ+P+ +T   +           ++   +L  GQNA 
Sbjct: 714  QAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIE-----------LIDYDKLPAGQNAT 762

Query: 779  VAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRR---SSDDMVNF 835
            VAV  + GY+ ED+LV+N+AS++RG  R E  R        K   + +R    + D+++ 
Sbjct: 763  VAVMSYSGYDIEDALVINKASIDRGFGRCETRR--------KTTTILKRYPNHTQDIISG 814

Query: 836  GKIQSK---IGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA--------------DHS 878
             ++      I +  +L  DG   +G  L SG I I K   +                D  
Sbjct: 815  MRVDENGDPIWQHKALGPDGLGEVGMKLDSGQIYINKAVPTNPTSDLNAAPEQSQYRDTP 874

Query: 879  IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQEN 938
            +  +  E   + +V++S +D+ +    V LRQ R P LGDKFSS HGQKGV G +  QE+
Sbjct: 875  VMYRAPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVQQED 934

Query: 939  FPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSV 998
             PF  QGIVPDI++NPH FPSR T G+++E   GK       G+ +G   Y T F    +
Sbjct: 935  MPFNDQGIVPDIIMNPHGFPSRMTVGKMIELVSGKA------GVLNGSLEYGTCFGGSKL 988

Query: 999  DAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVH 1058
            + +++ L   GF+  G + LY G TGE +++ IF GP +YQ+L HM  DK+  R  GP  
Sbjct: 989  EDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRA 1048

Query: 1059 PLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANV 1118
             LTRQP   R R GG++ GEMERDC+IA+GA+  L ERL   SD++++ +C +C      
Sbjct: 1049 VLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDEC------ 1102

Query: 1119 IQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                   G      +C  C S ++I+K  +PY AKLL QEL SM I  +   E
Sbjct: 1103 -------GLMGYSGWCTTCKSAENIIKMTIPYAAKLLFQELLSMNIAPRLRLE 1148


>gi|17647877|ref|NP_523706.1| RNA polymerase III 128kD subunit [Drosophila melanogaster]
 gi|78099797|sp|P25167.2|RPC2_DROME RecName: Full=DNA-directed RNA polymerase III subunit RPC2; Short=RNA
            polymerase III subunit C2; AltName: Full=DNA-directed RNA
            polymerase III 128 kDa polypeptide; Short=C128
 gi|7303535|gb|AAF58590.1| RNA polymerase III 128kD subunit [Drosophila melanogaster]
 gi|220943532|gb|ACL84309.1| RpIII128-PA [synthetic construct]
          Length = 1137

 Score =  507 bits (1306), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 377/1198 (31%), Positives = 572/1198 (47%), Gaps = 152/1198 (12%)

Query: 28   KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMR 87
            K   +F    GLV   I+S+N FI   ++K   +    +V  G DP        +Y  +R
Sbjct: 36   KLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVKA--NELVTSGADPL----FYLKYLDVR 89

Query: 88   FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
             G+  +D   F        H+      RL++ TYS+ + V +++   TQ+          
Sbjct: 90   VGKPDIDD-GFNITKATTPHE-----CRLRDTTYSAPITVDIEYTRGTQR---------- 133

Query: 148  REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGA 201
                I++        N++IGR+P+M++   C + G  +       +C  D GGYF+++G 
Sbjct: 134  ----IKR-------NNLLIGRMPLMLRCSNCALTGKSEFELSKLNECPLDPGGYFVVRGQ 182

Query: 202  EKVFVAQEQICLKRLWVSNSMGWT---VAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLS 258
            EKV + QEQ+   ++   +  G     V   +  K++R +V    +SK      G+  L 
Sbjct: 183  EKVILIQEQLSWNKMLTEDFNGVVQCQVTSSTHEKKSRTLV----LSKH-----GKYYLK 233

Query: 259  VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGR 318
               ++ +IPI ++F ALGV SD+EI +LI     D    N   AS+ DA N    F + R
Sbjct: 234  HNSMTDDIPIVVIFKALGVVSDQEIQSLIGI---DSKSQNRFGASLIDAYN-LKVFTQQR 289

Query: 319  NALKY------VDKLIKGTTFPPGESTEECMNTYLFPSL----HGTKQKARFLGYMVKCL 368
             AL+Y      V +    TT  P E   E + T +   +       + KA ++  MV+ +
Sbjct: 290  -ALEYMGSKLVVKRFQSATTKTPSEEARELLLTTILAHVPVDNFNLQMKAIYVSMMVRRV 348

Query: 369  LQAYSGRRKCDNRDDFRNKRLELAGELLER-----------ELKVHIAHARKRMAKALQR 417
            + A   +   D+RD + NKRLELAG LL             ELK  IA       KA Q 
Sbjct: 349  MAAELDKTLFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELKT-IADKNIPKVKAAQF 407

Query: 418  DLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLV 477
            D+           ++ A+ +T GL  A S+G W+    + ER +G+   L R + +  L 
Sbjct: 408  DVVK---------HMRAAQITAGLESAISSGNWTIKRFKMER-AGVTQVLSRLSYISALG 457

Query: 478  DLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-P 536
             + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + E P
Sbjct: 458  MMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERP 517

Query: 537  IFEQLFNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPT 594
            +    FN+G+E + + +   +     F VF++G+ +G+  +    V  LR  RR+  + +
Sbjct: 518  VMIVAFNAGVEDIREVSGNPINNPNVFLVFINGNVLGLTLNHKHLVRNLRYMRRKGRMGS 577

Query: 595  QVEIKRDELQSEVRIFMDAGRILRPLLVVEN---MGKIKSLEGKNY---TFQALLDHGII 648
             V +     Q  + I  D GR+ RP ++VEN   + K   L+  N     F   L  G+I
Sbjct: 578  YVSVHTSYTQRCIYIHTDGGRLCRPYVIVENRRPLVKQHHLDELNRGIRKFDDFLLDGLI 637

Query: 649  ELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARR 708
            E +   EE D   AW         ED+   + TH E++   LLG+  G++P+ +H+ + R
Sbjct: 638  EYLDVNEENDSFIAWN--------EDQIEDRTTHLEIEPFTLLGVCAGLVPYPHHNQSPR 689

Query: 709  VLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPR 768
              YQ      QA+G    N   R+D+L + L YP  P+ ++   +           +   
Sbjct: 690  NTYQC-AMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIE-----------LTNF 737

Query: 769  PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRS 828
             +L  GQNA VAV  + GY+ ED+L++N+AS++RG  R    ++ K  V     Q   R 
Sbjct: 738  DKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRI 797

Query: 829  SDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHS---------- 878
               M +       I + D LD DG    G  +Q+  I+I K   +    +          
Sbjct: 798  MGPMKD-ALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVP 856

Query: 879  -----IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
                 I  K  E   +++V++S+N +      + LRQ R P +GDKFSS HGQKGV G +
Sbjct: 857  YTAVPISYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLI 916

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
              QE+ PF   GI PD+++NPH FPSR T G+ LE   GK       G+  G   Y T F
Sbjct: 917  VEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKA------GLLEGKFHYGTAF 970

Query: 994  ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
                V+ I  +L R GF+  G +  Y G TG  + + I+ GP +YQ+L HM +DK+  R 
Sbjct: 971  GGSKVEDIQAELERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKHMVQDKMHARA 1030

Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
             GP   LTRQP   R R GG++ GEMERDCLI++GA+  + ERL   SD++++ +CR C 
Sbjct: 1031 RGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTC- 1089

Query: 1114 NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                        GR     +C  C S  ++ K ++PY  KLL QEL SM +  K   E
Sbjct: 1090 ------------GRMAYCSWCHFCQSSANVSKISMPYACKLLFQELTSMNVVPKMILE 1135


>gi|448100132|ref|XP_004199280.1| Piso0_002709 [Millerozyma farinosa CBS 7064]
 gi|359380702|emb|CCE82943.1| Piso0_002709 [Millerozyma farinosa CBS 7064]
          Length = 1158

 Score =  507 bits (1306), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 374/1196 (31%), Positives = 582/1196 (48%), Gaps = 155/1196 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++S+N F+   L+K   +    +V    DP    E   +Y  +R G  
Sbjct: 47   AFLKVKGLVKQHLDSFNYFVDVDLKKIIKA--NELVLSDVDP----EFYLKYLDIRVGHK 100

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
            +   P      G  E ++ P   RL+++TYS+ + V V+   YT+          GR+  
Sbjct: 101  SSSPP------GTKEVNLAPHECRLRDLTYSAPIYVDVE---YTR----------GRKII 141

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVF 205
            + K+        + IGR+P+M++S+ C + G+++       +C  D GGYFI+ G EKV 
Sbjct: 142  MHKD--------LEIGRMPIMLRSNKCILDGIDEHKMAQYDECPLDPGGYFIVNGTEKVI 193

Query: 206  VAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLS----VYF 261
            + QEQ+   R+ V          +++ K+N  IV+    S   + K    V++    +Y 
Sbjct: 194  LVQEQLSKNRIIV----------EADEKKN--IVQASVTSSTHERKSKTYVITKNDKIYL 241

Query: 262  ----LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG 317
                ++ ++PI I+  A G++SD EI+ L+   C        LFA   +   +  E    
Sbjct: 242  KHNSIAEDVPIVIVLKAAGITSDLEILQLV---CGQDPNYQDLFAVNFEEAARL-EVLTQ 297

Query: 318  RNALKYVDKLIKG---------TTFPPG-ESTEECMNTYLFPSLHGTKQKARFLGYMVKC 367
            + AL Y+ K +K          +    G E+    +  ++  S    ++KA ++  M + 
Sbjct: 298  QQALNYIGKRVKTIRRAGAPKLSQLQEGIEAVATTIIAHITVSDLQFREKALYIATMTRR 357

Query: 368  LLQAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDR 423
            +L      +  D+RD   NKRLELAG+LL    E   K   +  +  + K L++      
Sbjct: 358  VLMTMHNPKMVDDRDYVGNKRLELAGQLLSLLFEDLFKKFNSDFKANIDKVLKKPSRTSE 417

Query: 424  TVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTR 483
                +   + ++ +T G++RA STG WS    + ER +G+   L R + +  L  + R  
Sbjct: 418  FDALLSINIHSNNITMGMNRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALGMMTRIS 476

Query: 484  QQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLF 542
             Q + + KV   R   PS +G +C   TP+GE CGLVKNL +   ++T   E P+    F
Sbjct: 477  SQFEKSRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEELPVKNLCF 536

Query: 543  NSGMEKL--ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKR 600
              G E +   D A+      F V+++G  IG  +  +SFV   R+ RR  ++   V I  
Sbjct: 537  TLGCENILEIDSATLHAVTNFGVYLNGTLIGATRFPVSFVDRFRKLRRSGKISAFVSIYT 596

Query: 601  DELQSEVRIFMDAGRILRPLLVV--ENMGKIKS-----LEGKNYTFQALLDHGIIELVGT 653
            +     V I  D GRI RPL++V  EN  ++K+     L    + F   L HG++E +  
Sbjct: 597  NSHHRAVHIATDGGRICRPLIIVDAENKSRVKAHHLKKLLSNEWAFDDFLKHGLVEYLDV 656

Query: 654  EEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQS 713
             EE D   A       +D+++    +FTH E++   +LG   G+IP+ +H+ + R  YQ 
Sbjct: 657  NEENDSLIAL----YEEDLKNTHQ-EFTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQC 711

Query: 714  QKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYN 773
                 QAIG    N   R+DTL + + YPQ+P+ +T   +           ++   +L  
Sbjct: 712  AM-GKQAIGAIGYNQFRRIDTLLYLMVYPQQPMVKTKTIE-----------LIDYDKLPA 759

Query: 774  GQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKR--RSSDD 831
            GQNA VAV  + GY+ ED+LV+N+AS++RG  R + +R          + +KR    + D
Sbjct: 760  GQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCQVLR-------KNTISLKRYPNHTKD 812

Query: 832  MVNFGKIQSK---IGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSI--------- 879
            +V   ++      I    SL  DG   +G  +++G + + K   + A  S+         
Sbjct: 813  IVAGMRVDENGDPIFSHSSLGTDGLGEVGMQVENGQVYVNKCVPTNAGESVLGSPDQHVQ 872

Query: 880  ----------KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGV 929
                        K  E   V +V++S  D+ +    V LRQ R P LGDKFSS HGQKGV
Sbjct: 873  SAESHRETPAYYKGPEPSYVDQVMMSVGDNDQALIKVLLRQTRRPELGDKFSSRHGQKGV 932

Query: 930  LGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRY 989
             G +  QE+ PF   GI PDI++NPH FPSR T G++LE   GK       G+ +G   Y
Sbjct: 933  CGIIVQQEDLPFNDDGISPDIIMNPHGFPSRMTVGKMLELISGKA------GVLNGSLEY 986

Query: 990  ATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKV 1049
             T F    ++ +++ L   GF+  G + LY G TGE +++ IF GP +YQ+L HM  DK+
Sbjct: 987  GTCFGGSKLEDMSKILVDHGFNYSGKDMLYSGITGECMQAYIFFGPIYYQKLKHMVLDKM 1046

Query: 1050 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHIC 1109
              R  GP   LTRQP   R R GG++ GEMERDC+IA+GA+  L ERL   SD++++ +C
Sbjct: 1047 HARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMLSSDAFEVDVC 1106

Query: 1110 RKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
             KC             G      +C  C S D ++K  +PY AKLL QEL SM I 
Sbjct: 1107 SKC-------------GLMGYNGWCTSCKSTDSVIKMTIPYAAKLLFQELLSMNIA 1149


>gi|448103831|ref|XP_004200136.1| Piso0_002709 [Millerozyma farinosa CBS 7064]
 gi|359381558|emb|CCE82017.1| Piso0_002709 [Millerozyma farinosa CBS 7064]
          Length = 1158

 Score =  507 bits (1305), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 372/1196 (31%), Positives = 582/1196 (48%), Gaps = 155/1196 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++S+N F+   L+K   +    +V    DP    E   +Y  +R G  
Sbjct: 47   AFLKVKGLVKQHLDSFNYFVDVDLKKIIKA--NELVLSDVDP----EFYLKYLDIRVGHK 100

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
            +   P      G  E ++ P   RL+++TYS+ + V V+   YT+          GR+  
Sbjct: 101  SSSPP------GTKEVNLAPHECRLRDLTYSAPIYVDVE---YTR----------GRKII 141

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVF 205
            + K+        + IGR+P+M++S+ C + G+++       +C  D GGYFI+ G EKV 
Sbjct: 142  MHKD--------LEIGRMPIMLRSNKCILDGIDEHKMAQYDECPLDPGGYFIVNGTEKVI 193

Query: 206  VAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLS----VYF 261
            + QEQ+   R+ V          +++ K+N  IV+    S   + K    V++    +Y 
Sbjct: 194  LVQEQLSKNRIIV----------EADEKKN--IVQASVTSSTHERKSKTYVITKNDKIYL 241

Query: 262  ----LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG 317
                ++ ++PI I+  A G++SD EI+ L+   C        LFA   +   +  E    
Sbjct: 242  KHNSIAEDVPIVIVLKAAGITSDLEILQLV---CGQDPNYQDLFAVNFEEAARL-EVLTQ 297

Query: 318  RNALKYVDKLIKG---------TTFPPG-ESTEECMNTYLFPSLHGTKQKARFLGYMVKC 367
            + AL Y+ K +K          +    G E+    +  ++  S    ++KA ++  M + 
Sbjct: 298  QQALNYIGKRVKTIRRAGAPKLSQLQEGIEAVATTIIAHITVSDLQFREKALYIATMTRR 357

Query: 368  LLQAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDR 423
            +L      +  D+RD   NKRLELAG+LL    E   K   +  +  + K L++      
Sbjct: 358  VLMTMHNPKMVDDRDYVGNKRLELAGQLLSLLFEDLFKKFNSDFKANIDKVLKKPSRTSE 417

Query: 424  TVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTR 483
                +   + ++ +T G++RA STG WS    + ER +G+   L R + +  L  + R  
Sbjct: 418  FDALLSINIHSNNITMGMNRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALGMMTRIS 476

Query: 484  QQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLF 542
             Q + + KV   R   PS +G +C   TP+GE CGLVKNL +   ++T   E P+    F
Sbjct: 477  SQFEKSRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEELPVKNLCF 536

Query: 543  NSGMEKL--ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKR 600
              G E +   D A+      F ++++G  IG  +  +SFV   R+ RR  ++   V I  
Sbjct: 537  TLGCENILEIDSATLHAVTNFGIYLNGTLIGATRFPVSFVDRFRKLRRSGKISAFVSIYT 596

Query: 601  DELQSEVRIFMDAGRILRPLLVV--ENMGKIKS-----LEGKNYTFQALLDHGIIELVGT 653
            +     V I  D GRI RPL++V  EN  ++K+     L    + F   L HG++E +  
Sbjct: 597  NSHHRAVHIATDGGRICRPLIIVDAENKSRVKAHHLKKLLSNEWAFDDFLKHGLVEYLDV 656

Query: 654  EEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQS 713
             EE D   A       +D+++    +FTH E++   +LG   G+IP+ +H+ + R  YQ 
Sbjct: 657  NEENDSLIAL----YEEDLKNTHQ-EFTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQC 711

Query: 714  QKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYN 773
                 QAIG    N   R+DTL + + YPQ+P+ +T   +           ++   +L  
Sbjct: 712  AM-GKQAIGAIGYNQFRRIDTLLYLMVYPQQPMVKTKTIE-----------LIDYDKLPA 759

Query: 774  GQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKR--RSSDD 831
            GQNA VAV  + GY+ ED+LV+N+AS++RG  R + +R          + +KR    + D
Sbjct: 760  GQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCQVLR-------KNTISLKRYPNHTKD 812

Query: 832  MVNFGKIQSK---IGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSI--------- 879
            +V   ++      I    SL  DG   +G  +++G + + K   + A  S+         
Sbjct: 813  IVAGMRVDENGEPIFSHSSLGTDGLGEVGMQVENGQVYVNKCVPTNAGESVLGSPDQHVQ 872

Query: 880  ----------KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGV 929
                        K  E   + +V++S  D+ +    V LRQ R P LGDKFSS HGQKGV
Sbjct: 873  SAESHRETPAYYKGPEPSYIDQVMMSVGDNDQALIKVLLRQTRRPELGDKFSSRHGQKGV 932

Query: 930  LGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRY 989
             G +  QE+ PF   GI PDI++NPH FPSR T G++LE   GK       G+ +G   Y
Sbjct: 933  CGIIVQQEDLPFNDDGITPDIIMNPHGFPSRMTVGKMLELISGKA------GVLNGSLEY 986

Query: 990  ATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKV 1049
             T F    ++ +++ L   GF+  G + LY G TGE +++ IF GP +YQ+L HM  DK+
Sbjct: 987  GTCFGGSKLEDMSKILVDHGFNYSGKDMLYSGITGECMQAYIFFGPIYYQKLKHMVLDKM 1046

Query: 1050 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHIC 1109
              R  GP   LTRQP   R R GG++ GEMERDC+IA+GA+  L ERL   SD++++ +C
Sbjct: 1047 HARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMLSSDAFEVDVC 1106

Query: 1110 RKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
             KC             G      +C  C S D ++K  +PY AKLL QEL SM I 
Sbjct: 1107 SKC-------------GLMGYNGWCTSCKSTDSVIKMTIPYAAKLLFQELLSMNIA 1149


>gi|218884686|ref|YP_002429068.1| DNA-directed RNA polymerase subunit B [Desulfurococcus kamchatkensis
            1221n]
 gi|218766302|gb|ACL11701.1| DNA-directed RNA polymerase, subunit B [Desulfurococcus kamchatkensis
            1221n]
          Length = 1149

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 388/1221 (31%), Positives = 587/1221 (48%), Gaps = 179/1221 (14%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
            +F E GLV   ++SY  FIK  L    + F E I+                  +   +  
Sbjct: 4    YFEEKGLVRQHLDSYERFIKEILPSILEEFKEIIIT-------------NKIKLVIEKYR 50

Query: 93   LDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYI 152
            +D P + +  G +E    P   RL+N+TY++ + V V+ +         D+    REQ +
Sbjct: 51   IDSPKWTSVEGIEESKT-PMECRLRNLTYATPIYVSVRIE---------DESGYTREQEL 100

Query: 153  QKEVLSDETTNIIIGRIPVMVKSD------LCWMKGVEKGDCDFDHGGYFIIKGAEKVFV 206
            +   L D         +PVM+KS       L   + +E G+   D GGYFII G+EKV V
Sbjct: 101  K---LMD---------LPVMLKSSIDPLSKLTPQELIENGEDPRDPGGYFIINGSEKVIV 148

Query: 207  AQEQICLKRLWV-------SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            AQE +    + V       S +    V   S  +R++LI+        E  K G  V   
Sbjct: 149  AQEDLASNNIIVDVMQEGSSVTHVAKVTSVSRGRRSQLII--------ERRKDG--VFYA 198

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCED-----CSILNILF----------ASI 304
             F   + P  IL  ALG++S+ E++       E       SIL +            AS 
Sbjct: 199  SFQGHKFPALILMIALGLASEAEMLYSTSLKPEIQTYLLPSILQVQEILPKLEIPEGASE 258

Query: 305  HDADNKCDEFRKG--RNALKYV-DKLIKGTTFPPGES----TEECMNTYLFP------SL 351
             +     +E+R+     AL ++  K I G    P E      E  ++  L P      S 
Sbjct: 259  EEVRRLKEEYRRKVIEEALDFIASKFIIGR---PREERILRAERLLDERLLPHIGIDSSP 315

Query: 352  HGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRM 411
                +KA F+G M+  +++   G R+ D++D +RNKRL+LAG++L   L+  +    + +
Sbjct: 316  ETRLKKAVFIGQMISRIIELQLGYREPDDKDHYRNKRLKLAGDMLAVLLRAAMMGFAREI 375

Query: 412  AKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRAN 471
             + +++ L   + +  ++     SI+T+ +  A +TG W  P  RT    G+   L R N
Sbjct: 376  KEGIEKQLAKTKKID-LKMVFKPSIITDRIQHAMATGNW--PGGRT----GVSQLLDRTN 428

Query: 472  PLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNL-------- 523
             L TL  LRR    +       +AR  H + WG++C   TP+G N GLVKNL        
Sbjct: 429  MLSTLSHLRRVVSPLARGQPHFEARELHGTQWGRMCPFETPEGANIGLVKNLALMTNVSV 488

Query: 524  --------------GVTGLVSTSILE-PIFEQLFNSGMEKL--ADDASYSLGGKFKVFVD 566
                          GV  +VST  ++  I + L +   E +  A + S    G  KVF++
Sbjct: 489  GIDDKEIEALLYRIGVVPIVSTRTIDGKIHKGLIDMISEDVSKASEISEKYSGWCKVFLN 548

Query: 567  GDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKR--DELQSEVRIFMDAGRILRPLLVVE 624
            G  IG  KD       +R  RR  ++ ++V +    ++   EV +  D+GRI RPL+V+E
Sbjct: 549  GKLIGYHKDGEELARTIRSLRRSGKISSEVNVAYIGNKYIKEVVVNTDSGRIRRPLIVIE 608

Query: 625  N------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPI 678
            N         +K L     TF+ L+  GI+E +  +EEE+   A     +  +       
Sbjct: 609  NGVPKLTREHVKLLSEGKLTFEDLVKQGIVEYLDPDEEENAYIALQPSDVTAE------- 661

Query: 679  KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQ 738
              TH E+ +  +LG++  IIP+  H+ + R +YQS   + Q++G    N   R+DT  H 
Sbjct: 662  -HTHLEIWIPAILGITASIIPYPEHNQSPRNMYQS-AMAKQSLGLYAANFQRRMDTRGHF 719

Query: 739  LFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRA 798
            L YPQRPL  T + + +G     +N    RP    GQN +VAV  + GYN ED+L+MNR+
Sbjct: 720  LHYPQRPLVETRMMNVIG-----YNE---RP---AGQNMVVAVLTYTGYNMEDALIMNRS 768

Query: 799  SLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGA 858
            S+ERG+ RS   R Y          ++   +    N    + +    + L++DG      
Sbjct: 769  SVERGLARSTFFRLYTTVEYKYPGGIQDEITIPSTNVRGYRGQKA-YEKLEEDGIVAPET 827

Query: 859  NLQSGDIVIGKYAD--------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFS 904
             +  GD++IGK +               +  D SI ++H E+G+V  V+++ + +G    
Sbjct: 828  QVSGGDVLIGKVSPPRFLSTQEYEVGGLTRQDTSIVMRHEEKGIVDTVLITMDSEGNKLI 887

Query: 905  VVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPG 964
             V +R +R P LGDKF+S HGQKGVLG L  Q + PFT +G+ PD++INPHAFPSR T  
Sbjct: 888  KVRVRDLRIPELGDKFASRHGQKGVLGLLLPQYDMPFTEEGVTPDLIINPHAFPSRMTVA 947

Query: 965  QLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTG 1024
            QL+E+  GK  AAL   I  G     TPF    ++ +   L R G+   G E +YDGRTG
Sbjct: 948  QLMESIAGKA-AALEGRIIDG-----TPFYKTPIEDLQIILRRHGYPYTGEEAMYDGRTG 1001

Query: 1025 EMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL 1084
            E++++ +FIG  +YQ+L HM+ DK+  R  GPV  LTRQP   R R GG+++GEME DCL
Sbjct: 1002 ELIKTPVFIGIVYYQKLHHMASDKIHARARGPVQILTRQPTEGRSRAGGLRWGEMEVDCL 1061

Query: 1085 IAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPY-CRICDSGDDI 1143
            I HG+A  L E +   SDS  +++C  C +        +G   + +G + C I      +
Sbjct: 1062 IGHGSALLLKEAMTDRSDSTIIYVCELCGS--------MGWYDRNKGKFVCPIHKEKGVL 1113

Query: 1144 VKANVPYGAKLLCQELFSMGI 1164
                V Y  KLL QEL SMGI
Sbjct: 1114 KPVEVSYAFKLLLQELMSMGI 1134


>gi|241958746|ref|XP_002422092.1| DNA-directed RNA polymerase III subunit, putative [Candida
            dubliniensis CD36]
 gi|223645437|emb|CAX40093.1| DNA-directed RNA polymerase III subunit, putative [Candida
            dubliniensis CD36]
          Length = 1157

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 378/1193 (31%), Positives = 580/1193 (48%), Gaps = 150/1193 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++SYN F+   L+K   +    +V    DP    E   +Y  +R G  
Sbjct: 47   AFLKVKGLVKQHLDSYNYFVDVDLKKIIKA--NELVLSDVDP----EFYVKYLDIRVGHK 100

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
            +  KP      G  E  + P   RL+++TYS+ + V V+   YT+ R      K  R   
Sbjct: 101  STSKP------GVKEVILPPHECRLRDLTYSAPIYVDVE---YTRGR------KIIRHND 145

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG------DCDFDHGGYFIIKGAEKVF 205
            ++            IGR+PVM++S+ C ++G+ +       +C  D GGYF++ G EKV 
Sbjct: 146  LE------------IGRMPVMLRSNKCMLEGMSEATMAQVEECPLDPGGYFVVNGTEKVI 193

Query: 206  VAQEQICLKRLWVS--NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKV-LSVYFL 262
            + QEQ+   R+ V      G   A  + +   R        SK   I   +K+ L    +
Sbjct: 194  LVQEQLSKNRIIVEADEKKGIVQASVTSSTHER-------KSKTYVITKNDKIYLKHNSI 246

Query: 263  STEIPIWILFFALGVSSDKEIVNLI---DFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
            S +IPI I+  A G+ SD EI+ L+   D   +D  ++N   A+      + + F + + 
Sbjct: 247  SEDIPIVIILKAAGIVSDLEILQLVCGSDPNYQDLFVVNFEEAA------RLEVFTQ-QQ 299

Query: 320  ALKYVDKLIK------GTTFPPGESTEECMNTYLFPSLHGT----KQKARFLGYMVKCLL 369
            AL YV K +K             +   E + T +   L  +    K+KA ++  M + ++
Sbjct: 300  ALYYVGKRVKTIRRAGAPKLSQLQEGIEAIATTIIAHLTVSDLQFKEKALYIATMARRVV 359

Query: 370  QAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDRTV 425
             A    +  D+RD   NKRLELAG+L+    E   K   +  +  + K L++        
Sbjct: 360  MAMHNPKMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNSDFKANIDKVLKKPSRTSEFD 419

Query: 426  RPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQ 485
              +   + ++ +T GL+RA STG WS    + ER +G+   L R + +  L  + R   Q
Sbjct: 420  ALLSINIHSNNITMGLNRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALGMMTRISSQ 478

Query: 486  VQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNS 544
             + + KV   R   PS +G +C   TP+GE CGLVKNL +   ++T   E P+ +     
Sbjct: 479  FEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEAPVKKLCIVL 538

Query: 545  GMEKL--ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
            G E +   D A+  + G F V+++G  IG  +  + FV + R  RR  ++   + I  + 
Sbjct: 539  GCEPIFALDSATLHVEGNFGVYLNGTLIGTTRFPVKFVHDFRHLRRNGKVSAFISIYTNT 598

Query: 603  LQSEVRIFMDAGRILRPLLVVENMGKIK-------SLEGKNYTFQALLDHGIIELVGTEE 655
                V I  D GRI RPL++VEN GK K        L  + ++F   L HG++E +   E
Sbjct: 599  HHQAVHIATDGGRICRPLIIVEN-GKSKVTAEHLAKLINQEWSFDDFLKHGLVEYLDVNE 657

Query: 656  EEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQK 715
            E D   A        DI        TH E++   +LG   G+IP+ +H+ + R  YQ   
Sbjct: 658  ENDSLIAL----YEDDITANPGAVVTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAM 713

Query: 716  HSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQ 775
               QAIG    N   R+DTL + + YPQ+P+ +T   +           ++   +L  GQ
Sbjct: 714  -GKQAIGAIAYNQFRRIDTLLYFMVYPQQPMVKTKTIE-----------LIEYDKLPAGQ 761

Query: 776  NAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKR--RSSDDMV 833
            NA VAV  + GY+ ED+LV+N+ASL+RG  R + +R          +Q+K+    + D++
Sbjct: 762  NATVAVMSYSGYDIEDALVLNKASLDRGFGRCQVVR-------KNTVQLKKYPNHTQDIL 814

Query: 834  NFGKIQSKIGRV---DSLDDDGFPFIGANL-------------QSGDIVIG-----KYAD 872
               ++      +    +L  DG   +G+ +              SGD  +G     + A+
Sbjct: 815  AGMRVDENNKPIFPHQALGPDGLGEVGSRIFNGQVFANKCVPTNSGDSTLGAQQEQRTAE 874

Query: 873  SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGF 932
            S  +     K  E   + +V++S +D+ +    V LRQ R P LGDKFSS HGQKGV G 
Sbjct: 875  SHREAPAFYKGPEPSYIDQVMMSVSDNDQALIKVLLRQTRRPELGDKFSSRHGQKGVCGI 934

Query: 933  LESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATP 992
            +  QE+ PF   GI PDI++NPH FPSR T G+++E   GK       G+ +G   Y T 
Sbjct: 935  IVQQEDLPFNDSGISPDIIMNPHGFPSRMTVGKMIELISGKA------GVLNGSLEYGTC 988

Query: 993  FATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFR 1052
            F    ++ +++ L   GFS  G + LY G TGE +++ IF GP +YQ+L HM  DK+  R
Sbjct: 989  FGGSKLEDMSKILVEKGFSYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHAR 1048

Query: 1053 NTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKC 1112
              GP   LTRQP   R R GG++ GEMERDC+IA+GA+  L ERL   SD++++ +C KC
Sbjct: 1049 ARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCNKC 1108

Query: 1113 KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
                         G      +C  C S ++++K  +PY AKLL QEL SM I 
Sbjct: 1109 -------------GLMGYNNWCTTCKSSENVIKMTIPYAAKLLFQELLSMNIA 1148


>gi|366989721|ref|XP_003674628.1| hypothetical protein NCAS_0B01700 [Naumovozyma castellii CBS 4309]
 gi|342300492|emb|CCC68254.1| hypothetical protein NCAS_0B01700 [Naumovozyma castellii CBS 4309]
          Length = 1150

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 371/1198 (30%), Positives = 584/1198 (48%), Gaps = 163/1198 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++S+N F+   L+K   +    ++    DP    E   +Y  +R G+ 
Sbjct: 52   AFLKVKGLVKQHLDSFNYFVDVDLKKIIKA--NQVILSDVDP----EFYLKYVDIRVGK- 104

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
                    + +   ++   P   RL++MTYS+ + V ++   YT+          GR   
Sbjct: 105  -------RSTSSAKDYLTPPHECRLRDMTYSAPIYVDIE---YTR----------GRNII 144

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVF 205
            + K+V         +GR+P+M++S+ C + G+++       +C  D GGYFI+ G EKV 
Sbjct: 145  MHKDVE--------LGRMPIMLRSNKCTLYGIDEKEMAKLNECPLDPGGYFIVNGTEKVI 196

Query: 206  VAQEQICLKRLWVSNS-----MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKV-LSV 259
            + QEQ+   R+ V        +  +V   +  +R++  V          I   +K+ L  
Sbjct: 197  LVQEQLSKNRIIVEADEKKGIVQASVTSSTHERRSKTYV----------ITKNDKIYLKH 246

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
              ++ EIPI I+  A GV SD EI+ L+   C + S    +FA   +  ++ + + + + 
Sbjct: 247  NSITEEIPIVIVLKACGVVSDLEIMQLV---CGNDSSYQDIFAVNLEEASRLNIYTQ-QQ 302

Query: 320  ALKYVDKLIKG------TTFPPG-ESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAY 372
            AL+++   +K       +    G E+    +  +L       ++KA ++  M + ++ A 
Sbjct: 303  ALEFIGTKVKTMRRQKLSVLQEGIEAIATTVVAHLTVEALDFREKALYMAMMTRRVVMAI 362

Query: 373  SGRRKCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKRMAKALQRDLYG 421
               +  D+RD   NKRLELAG+L+             + K  I    K+  +A++ D   
Sbjct: 363  QNPKMVDDRDYVGNKRLELAGQLISLLFEDLFKKFNSDFKATIDKVLKKPNRAMEYDAL- 421

Query: 422  DRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRR 481
                  +   + ++ +T+GL+RA STG WS    + ER +G+   L R + +  L  + R
Sbjct: 422  ------LSINVHSNNITSGLNRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALGMMTR 474

Query: 482  TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLVSTSILEPIFEQ 540
               Q + + KV   R   PS +G +C   TP+GE CGLVKNL + T + +    EPI   
Sbjct: 475  ISSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKRL 534

Query: 541  LFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKR 600
             +  G+E ++   S SL   F V+++G  IG  +  + FVS+ R  RR  ++   + I  
Sbjct: 535  CYILGVEDVSLIDSASLHLNFGVYLNGTLIGTTRFPIKFVSQFRHLRRTGKISEFISIYA 594

Query: 601  DELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGIIELVGT 653
            +  Q  V I  D GRI RPL++V   GK       ++ L      F   L  G++E +  
Sbjct: 595  NSHQKAVHIATDGGRICRPLIIVTK-GKSHVTADHLRRLLNGELVFDDFLKLGLVEYLDV 653

Query: 654  EEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQS 713
             EE D   A       KDIE       TH E++   +LG   G+IP+ +H+ + R  YQ 
Sbjct: 654  NEENDSFIAL----YEKDIESAS----THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQC 705

Query: 714  QKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYN 773
                 QAIG    N   R+DTL + + YPQ+P+ +T   +           ++   +L  
Sbjct: 706  -AMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIE-----------LIDYDKLPA 753

Query: 774  GQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRR---SSD 830
            GQNA VAV  + GY+ ED+LV+N+AS++RG  R E  R        K   V +R    + 
Sbjct: 754  GQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCETRR--------KTTTVLKRYPNHTQ 805

Query: 831  DMVNFGKIQSK---IGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIK------- 880
            D++   ++      I +  +L  DG   +G  ++SG I I K   +   + +        
Sbjct: 806  DIIGGMRVDENGEPIWQHKALGADGLGEVGMKVESGQIYINKSVPTNQSNDMTTQAQQAQ 865

Query: 881  -------LKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
                    +  E   + +V++S +D+ +    V LRQ R P LGDKFSS HGQKGV G +
Sbjct: 866  YRETPVIYRAPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGII 925

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
              QE+ PF  QGIVPDI++NPH FPSR T G+++E   GK       G+ +G   Y T F
Sbjct: 926  VKQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKA------GVLNGSLEYGTCF 979

Query: 994  ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
                ++ +++ L   GF+  G + LY G TGE +++ IF GP +YQ+L HM  DK+  R 
Sbjct: 980  GGSKLEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARA 1039

Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
             GP   LTRQP   R R GG++ GEMERDC+IA+GA+  L ERL   SD++++ +C KC 
Sbjct: 1040 RGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDKC- 1098

Query: 1114 NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                        G      +C  C S ++I+K  +PY AKLL QEL SM I  +   E
Sbjct: 1099 ------------GLMGYSGWCTTCKSAENIIKMTIPYAAKLLFQELLSMNIAPRLRME 1144


>gi|451845872|gb|EMD59183.1| hypothetical protein COCSADRAFT_175739 [Cochliobolus sativus ND90Pr]
          Length = 1215

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 374/1201 (31%), Positives = 567/1201 (47%), Gaps = 163/1201 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++SYN F+   L+K   +     V   +DP    E    Y  +R    
Sbjct: 114  AFLKTKGLVKQHVDSYNHFVDVDLKKIIKA--NRFVRSDFDPKFLLE----YTDIRV--- 164

Query: 92   TLDKPSFFAGNGGDEHDM-------FPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKF 144
                    + N  +E D+        P   RL++MTY++ + V +   +YT+      + 
Sbjct: 165  -------LSPNRQEEDDLEHHHSTITPNECRLRDMTYAAPIVVDI---IYTRGNAKVKR- 213

Query: 145  KTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFII 198
                             T I IGR+P+M+KS+ C + G          +C  D GGYFI 
Sbjct: 214  -----------------TGIKIGRMPIMLKSNKCVLAGKNDREMAVMEECPLDPGGYFIT 256

Query: 199  KGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLS 258
            +G EKV + QEQ+   R+ V ++ G   A  + +   R     V   K      G   L 
Sbjct: 257  RGQEKVILVQEQLNKNRVIVESAKGIMQASVTSSTHERRTKTYVIQKK------GLMYLR 310

Query: 259  VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGR 318
               LS EIPI  +  ALGV SDKEI+ +I    ED +  +  FA   +A  + ++     
Sbjct: 311  HNTLSEEIPIVFVMKALGVHSDKEILLMI--AGEDSAYQDN-FAINFEACAR-EQIHTQE 366

Query: 319  NALKYVDKLIKGTTFPPGESTE--------ECMNTYLFP--SLHGT--KQKARFLGYMVK 366
             AL+Y+   ++    P G S          EC++  + P   + GT  + KA ++  M +
Sbjct: 367  RALEYIGHRVRLVKKPLGTSRNRNYHLEAIECLSNVVLPHVPVEGTNYRPKALYVALMAR 426

Query: 367  CLLQAYSGRRKCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKRMAKAL 415
             +L A    +  D+RD   NKRLEL+G++L             + K+ I    K+  +A 
Sbjct: 427  RVLMAMQDPKLVDDRDYVGNKRLELSGQMLSLLFEDHFKRFNHDFKLSIDKVLKKQVRAQ 486

Query: 416  QRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQT 475
            + D +         + +  + +T G+ RA +TG WS    + ER +G+   L R + +  
Sbjct: 487  EFDAFS-------HFSVHKNHITMGVERAIATGNWSLKRFKMER-AGVTHVLSRLSYIAA 538

Query: 476  LVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLVSTSIL 534
            L  + R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL + T + +    
Sbjct: 539  LGMMTRISSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTEDDD 598

Query: 535  EPIFEQLFNSGMEKLADDASYSLG--GKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL 592
            +P+ + +F  G E +       +   G + V ++G  I V      F++  R+ RR   +
Sbjct: 599  DPVRKIVFMLGAEDICSQTGEEIHAEGVYSVCLNGTPIAVTDTPKRFLNSFRKLRRMGRI 658

Query: 593  PTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHG 646
                 I  D    EV +  D GRI RP+++VEN         +K+L      F+  L  G
Sbjct: 659  SEFTSIHIDHDHCEVHVATDEGRICRPMIIVENQHSKVTSRYLKALRKGTMEFEDFLTRG 718

Query: 647  IIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHA 706
            ++E + T EE D   A      LK+ E  +    TH E++   +LG   G+IP+ +H+ +
Sbjct: 719  LVEYLDTNEENDTNIA------LKESEINQ--HTTHLEIEPFTILGAVAGLIPYPHHNQS 770

Query: 707  RRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHIL 766
             R  YQ      QAIG    N   R+DTL + + YPQ+P+ +T   +           + 
Sbjct: 771  PRNTYQCAM-GKQAIGAIAYNQFNRIDTLLYLMVYPQQPMVKTRTIE-----------LT 818

Query: 767  PRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSE----HIRSYKAEVDNKEM 822
               +L  GQNA VAV  + GY+ ED+L++N+AS +RG  R +    H+   K   +N   
Sbjct: 819  KYDKLPAGQNATVAVMSYSGYDIEDALILNKASCDRGFGRCQVFKKHVTPLKTYANN--- 875

Query: 823  QVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVI---------GKYADS 873
                  + D +N G +        ++  DG   +GA L++GD  +         G  ++ 
Sbjct: 876  ------TSDRINAGALDVANSNHQAIGQDGIAQVGARLEAGDAFLLKSIPQDTAGPASNL 929

Query: 874  GADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
              D   + K  +   + K  ++ N+ G     + +RQ R P LGDKFSS HGQKG  G +
Sbjct: 930  YKDKPERYKLPDCSYIDKACITENESGTTLIKLLMRQTRRPELGDKFSSRHGQKGTTGLI 989

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
              QE+ PF  QGI PDI++NPH FPSR T G+++E   GK       G+ +G   Y T F
Sbjct: 990  VQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMMELLSGKA------GVLNGTLEYGTAF 1043

Query: 994  ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
               +V+ +++ L   GFS  G + L  G TGE  +   F GP +YQ+L HM +DK+  R 
Sbjct: 1044 GGSTVEDMSQILVEKGFSYTGKDYLTSGITGEAHQFYTFFGPIYYQKLKHMVQDKMHSRA 1103

Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
             GP   LTRQP   R R GG++ GEMERDCLIA+GA+  L ERL   SD++ + +C KC 
Sbjct: 1104 RGPRAILTRQPTEGRARDGGLRLGEMERDCLIAYGASQLLLERLMISSDAHNVDVCEKC- 1162

Query: 1114 NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMG--ITLKFDTE 1171
                        G+     YC++C+S   I K  +PY AKLL QEL SM   +T+  + E
Sbjct: 1163 ------------GQMGYSGYCKLCESEKAIRKITMPYAAKLLIQELGSMNVKVTIGLEDE 1210

Query: 1172 F 1172
            F
Sbjct: 1211 F 1211


>gi|365758302|gb|EHN00152.1| Ret1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
          Length = 1149

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 372/1196 (31%), Positives = 583/1196 (48%), Gaps = 157/1196 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++S+N F+   L+K   +    ++    DP    E   +Y  +R G+ 
Sbjct: 50   AFLKVKGLVKQHLDSFNYFVDTDLKKIIKA--NQLILSDVDP----EFYLKYIDIRVGKK 103

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
            +         +   ++   P   RL++MTYS+ + V ++   YT+          GR   
Sbjct: 104  S--------SSSTKDYLTPPHECRLRDMTYSAPIYVDIE---YTR----------GRNII 142

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWM------KGVEKGDCDFDHGGYFIIKGAEKVF 205
            + K+V         IGR+P+M++S+ C +      K  +  +C  D GGYFI+ G EKV 
Sbjct: 143  MHKDVE--------IGRMPIMLRSNKCILYDADESKMAKLNECPLDPGGYFIVNGTEKVI 194

Query: 206  VAQEQICLKRLWVS--NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLS 263
            + QEQ+   R+ V      G   A  + +   R          +   K G+  L    ++
Sbjct: 195  LVQEQLSKNRIIVEADEKKGIVQASVTSSTHER------KSKTYVITKNGKIYLKHNSIA 248

Query: 264  TEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKY 323
             EIPI I+  A G+ SD EI+ L+   C + S    +FA   +  +K D + + + AL+Y
Sbjct: 249  EEIPIAIVLKACGILSDLEIMQLV---CGNDSSYQDIFAVNLEESSKLDIYTQ-QQALEY 304

Query: 324  VDKLIKG------TTFPPG-ESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRR 376
            +   +K       T    G E+    +  +L       ++KA ++  M + ++ A    +
Sbjct: 305  IGAKVKTMRRQKLTILQEGVEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAMYNPK 364

Query: 377  KCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKRMAKALQRDLYGDRTV 425
              D+RD   NKRLELAG+L+             + K+ I    K+  +A++ D       
Sbjct: 365  MIDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDAL----- 419

Query: 426  RPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQ 485
              +   + ++ +T+GL+RA STG WS    + ER +G+   L R + +  L  + R   Q
Sbjct: 420  --LSINVHSNNITSGLNRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALGMMTRISSQ 476

Query: 486  VQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLVSTSILEPIFEQLFNS 544
             + + KV   R   PS +G +C   TP+GE CGLVKNL + T + +    EPI    +  
Sbjct: 477  FEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKNLCYVL 536

Query: 545  GMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQ 604
            G+E +    S SL   + V+++G  IG  +  + FV++ R  RR  ++   + I  +  Q
Sbjct: 537  GVEDITLIDSASLHLNYGVYLNGTLIGSIRFPIKFVTQFRNLRRTGKVSEFISIYSNSHQ 596

Query: 605  SEVRIFMDAGRILRPLLVVEN-MGKIKS------LEGKNYTFQALLDHGIIELVGTEEEE 657
              V I  D GRI RPL++V +   ++K       L+GK   F   L  G++E +   EE 
Sbjct: 597  MAVHIATDGGRICRPLIIVSSGQSRVKDTHLRQLLDGK-LDFDDFLKLGLVEYLDVNEEN 655

Query: 658  DCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHS 717
            D   A   K ++  +        TH E++   +LG   G+IP+ +H+ + R  YQ     
Sbjct: 656  DSYIALYEKDIVPSM--------THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQC-AMG 706

Query: 718  SQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNA 777
             QAIG    N   R+DTL + + YPQ+P+ +T   +           ++   +L  GQNA
Sbjct: 707  KQAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIE-----------LIDYDKLPAGQNA 755

Query: 778  IVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSD---DMVN 834
             VAV  + GY+ ED+LV+N++S++RG  R E  R        K   V +R ++   D++ 
Sbjct: 756  TVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRR--------KTTTVLKRYANHTQDIIG 807

Query: 835  FGKIQSK---IGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA---------------- 875
              ++      I +  SL  DG   +G  +QSG I I K   + +                
Sbjct: 808  GMRVDENGEPIWQHQSLGPDGLGEVGMKVQSGQIYINKSVPTNSADAPNPNIVNVQTQYR 867

Query: 876  DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLES 935
            +  +  +  E   + +V++S +D+ +    V LRQ R P LGDKFSS HGQKGV G +  
Sbjct: 868  EAPVIYRGPEPSHIDQVMMSVSDNDQALIKVLLRQSRRPELGDKFSSRHGQKGVCGIIVK 927

Query: 936  QENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFAT 995
            QE+ PF  QGIVPDI++NPH FPSR T G+++E   GK       G+ +G   Y T F  
Sbjct: 928  QEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKA------GVMNGTLEYGTCFGG 981

Query: 996  PSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTG 1055
              ++ +++ L   GF+  G + LY G TGE +++ IF GP +YQ+L HM  DK+  R  G
Sbjct: 982  SKLEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARG 1041

Query: 1056 PVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNV 1115
            P   LTRQP   R R GG++ GEMERDC+IA+GA+  L ERL   SD++++ +C KC   
Sbjct: 1042 PRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDKC--- 1098

Query: 1116 ANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                      G      +C  C S ++I+K  +PY AKLL QEL SM I  +   E
Sbjct: 1099 ----------GLMGYSGWCTTCKSAENIIKMTIPYAAKLLFQELLSMNIAPRLRLE 1144


>gi|68131844|gb|AAY85200.1| RNA polymerase II second largest subunit [Coriaria sarmentosa]
          Length = 952

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 341/995 (34%), Positives = 524/995 (52%), Gaps = 109/995 (10%)

Query: 109  MFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGR 168
            +FP+ ARL+N+TYS+ + V V       KRV     K G +   ++   + + T + IG+
Sbjct: 5    LFPKAARLRNLTYSAPLYVDVT------KRV----IKKGHDG--EEVTETQDFTKVFIGK 52

Query: 169  IPVMVKSDLCWM------KGVEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV---- 218
            +P+M++S  C +         E G+C +D GGYFII G+EKV +AQE++    ++V    
Sbjct: 53   VPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 112

Query: 219  -SNSMGWTVAYKS-ENKRNR----LIVRLVDMSKFEDIKGGEKV-LSVYFLSTEIPIWIL 271
              N   +    +S    +NR    + VR++  +  +    G+ +  ++ ++ TEIPI I+
Sbjct: 113  QPNKYAFVAEVRSMAESQNRPPSTMFVRMLSRASAKGGSSGQYIRATLPYIRTEIPIIIV 172

Query: 272  FFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGT 331
            F ALG  +DK+I+  I +   D  ++ +L  S+ +A       +  + AL Y+ K  +G 
Sbjct: 173  FRALGFVADKDILEHICYDFADTQMMELLRPSLEEAF----VIQNQQVALDYIGK--RGA 226

Query: 332  TFPPGESTE-------ECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRRKCDN 380
            T   G + E       E +   + P +        +KA + GY++  LL    GRR  D+
Sbjct: 227  TV--GVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRPEDD 284

Query: 381  RDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNG 440
            RD + NKRL+LAG LL    ++      + +   +Q+ +   + V  +++ + A  +T+G
Sbjct: 285  RDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVN-LQFAIKAKTITSG 343

Query: 441  LSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHP 500
            L  + +TG W        R +G+   L R     TL  LRR    +   GK+   R  H 
Sbjct: 344  LKYSLATGNWGQANAAGTR-AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHN 402

Query: 501  SHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGG 559
            S WG +C   TP+G+ CGLVKNL +   ++  S   PI E L   G E   + +   +  
Sbjct: 403  SQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQ 462

Query: 560  KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRP 619
              K+FV+G W+G+ ++    V  LRR RRR ++ T+V + RD    E+RI+ D GR  RP
Sbjct: 463  ATKIFVNGCWVGIHREPDMLVKTLRRLRRRVDVNTEVGVVRDIRLRELRIYTDYGRCSRP 522

Query: 620  LLVVENM------GKIKSLEGKNYT----FQALLDHGIIELVGTEEEEDCCTAWGIKYLL 669
            L +VE          I +L+ +       +  L+  G IE + TEEEE    +  I+ L+
Sbjct: 523  LFIVEKQRLLIRKKDIHALQQRESPEDGGWHDLVSKGFIEYIDTEEEETTMISMTIRDLV 582

Query: 670  K---DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTT 726
            +     E+     +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   T
Sbjct: 583  QARNSPEEAYSDNYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGIYVT 641

Query: 727  NPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLG 786
            N   R+DTL++ L+YPQ+PL  T   + L      H   LP      G  AIVA+  + G
Sbjct: 642  NYQFRMDTLAYVLYYPQKPLVTTRAMEHL------HFRQLP-----AGIYAIVAIACYSG 690

Query: 787  YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK------IQS 840
            YNQEDS++MN++S++RG FRS   RSY+ E       VK        +FG+      +  
Sbjct: 691  YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE-------DFGRPDRANTMGM 743

Query: 841  KIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD--------------SGADHSIKLKHTER 886
            + G  D LDDDG    G  +   D++IGK                 + +DHSI L+H+E 
Sbjct: 744  RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDEAQGQAAARYTRSDHSISLRHSET 803

Query: 887  GMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGI 946
            G+V +V+L++N DG  F  V +R VR P +GDKFSS HGQKG +G   +QE+ P+T++GI
Sbjct: 804  GIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI 863

Query: 947  VPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLH 1006
             PDI++NPHA PSR T GQL+E  +GK  A +GK      +  ATPF   +VD I++ LH
Sbjct: 864  TPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGK------EGDATPFTDVTVDNISKALH 917

Query: 1007 RAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRL 1041
            + G+   G E +Y+G TG  + ++IF+GPT+YQRL
Sbjct: 918  KCGYQMRGFETMYNGHTGRQLSAMIFLGPTYYQRL 952


>gi|305663643|ref|YP_003859931.1| DNA-directed RNA polymerase subunit B [Ignisphaera aggregans DSM
            17230]
 gi|304378212|gb|ADM28051.1| DNA-directed RNA polymerase subunit B [Ignisphaera aggregans DSM
            17230]
          Length = 1150

 Score =  506 bits (1302), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 388/1193 (32%), Positives = 588/1193 (49%), Gaps = 157/1193 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVE---PGYDPSKKGEGEWRYASMRF 88
            +F  E G+  H I+SYN FI+  L +      E ++E   PG+    KG   WR    + 
Sbjct: 40   AFIKEKGITRHHIDSYNAFIEKILGEII--MEEPVIETSIPGFKVVIKG---WRVGEPQV 94

Query: 89   GQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGR 148
             ++          +G    ++ P   R +++TYS  + + +    Y              
Sbjct: 95   KEI----------DGSINRNITPMECRHRDITYS--VPIYITLVPYEND----------- 131

Query: 149  EQYIQKEVLSDETTNIIIGRIPVMVKSD---LCWMKG---VEKGDCDFDHGGYFIIKGAE 202
                    +      ++IG IP+MVKS    L  M     ++ G+   D GGYFII G E
Sbjct: 132  --------VPGNPVEVLIGEIPLMVKSSKDPLSKMTSEELIKIGEDPKDPGGYFIIDGTE 183

Query: 203  KVFVAQEQICLKRLWVS-NSMGWTVAYKSENKRNRLIVRL-VDMSKFEDIKGGEKVLSVY 260
            ++ VAQE +   R+ V     G  + + ++   + +  R+ V M + +D   G   +S  
Sbjct: 184  RIIVAQEDLASNRVIVDYGQEGLNITHTAKVISSTIGYRVPVIMDRHKD---GTLHVSFP 240

Query: 261  FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNA 320
             +  +IP  +L  ALG+  D +I   + F   D  I N L  S   A +         +A
Sbjct: 241  AVPGKIPFVVLMRALGLERDFDIAIAVSF---DPVIQNELLPSFVQASD----IATVEDA 293

Query: 321  LKYVDKLIKGTTFPPGESTEE-------CMNTYLFPSLHGTK-----QKARFLGYMVKCL 368
            L Y+     G+    G++ E         ++ Y  P L G+K     +KA FLG M   L
Sbjct: 294  LDYI-----GSRIAIGQARESRIERAKYVLDKYFLPHL-GSKPEDRLRKALFLGQMACKL 347

Query: 369  LQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPI 428
            ++   G R  D++D + NKR++LAGE+L    +V      + +   L+R    +R +  I
Sbjct: 348  IEFVLGYRPVDDKDHYANKRIKLAGEMLALLFRVAFKAFLRDLRYQLERAKIKERRLN-I 406

Query: 429  EYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQY 488
              Y+ + ++T  +  A +TG W     RT    G+   L R N + ++  +RRT   +  
Sbjct: 407  ALYIRSDVITERIKHAMATGTWIG--GRT----GVSQILDRTNWISSISHMRRTLSPLSR 460

Query: 489  TGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQ-LFNSG-- 545
            +    +AR  H + +G++C   TP+G NCGLVKNL +   +S    E + E+ L++ G  
Sbjct: 461  SQPHFEARDLHGTQFGRLCPFETPEGPNCGLVKNLALMATISVGEDEHLVEKILYDKGTI 520

Query: 546  -----MEKLAD-DASYS-LGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEI 598
                  EK+ + + SY  +    KV+++G  IG   +    V +LR  + R EL  +V I
Sbjct: 521  PILVLFEKVRNGELSYEDIKTWSKVYLNGTLIGYHPNGKELVEKLRDMKHRGELSYEVGI 580

Query: 599  K--RDELQSEVRIFMDAGRILRPLLVVENMGKIK-------SLEGKNYTFQALLDHGIIE 649
               R +  +EV +  D+GRILRPL+VVEN GK+K        ++    TF+ L+  G IE
Sbjct: 581  AYYRTKYINEVYVNTDSGRILRPLMVVEN-GKLKITKEVIDKVKKGMMTFEDLVKKGYIE 639

Query: 650  LVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRV 709
            L+  EEEE+   A   + + K+         TH E+    ++G++   IP+A H+ + R 
Sbjct: 640  LLDPEEEENALVAINPEDIGKET--------THVEIWPPAMMGVAASTIPYAEHNQSPRN 691

Query: 710  LYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRP 769
             YQS   + QA+GF   N  +R DT +H L YPQ PL +T     +G     +N    RP
Sbjct: 692  AYQSAM-AKQALGFYMANFILRTDTRAHILHYPQIPLVQTRALSIIG-----YND---RP 742

Query: 770  ELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSS 829
               +GQN +VAV  + GYN ED+L+MN++S++RG+ RS   R Y  E    E++      
Sbjct: 743  ---SGQNMVVAVMSYTGYNMEDALIMNKSSVDRGLARSNFFRLYSTE----ELKYAGGQE 795

Query: 830  DDM-VNFGKIQSKIGR--VDSLDDDGFPFIGANLQSGDIVIGK---------------YA 871
            D + +   K+    G+     LD+DG   +   ++ G+ +IGK                A
Sbjct: 796  DRIEIPDPKVLGYRGKESYTKLDEDGIAKVEVQVKGGEALIGKTSPPRFVEEYKGYGILA 855

Query: 872  DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLG 931
                D S+ ++H E G V  V ++S+ +G     V +R +R P +GDKF+S HGQKGV+G
Sbjct: 856  QRRKDSSVTVRHGEIGWVDAVFITSSLEGHRLIKVRVRDLRIPEIGDKFASRHGQKGVIG 915

Query: 932  FLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYAT 991
             L  Q + P+T  GI PD++INPHA PSR T GQL+E+  GK  A  GK +        T
Sbjct: 916  ALIPQYDMPYTPDGITPDLIINPHALPSRMTLGQLMESIAGKVAALRGKNVD------GT 969

Query: 992  PFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKF 1051
            PF   ++D +  QL   G+   GTE +YDGRTGE++ + IFIG  +YQ+L HM  DK+  
Sbjct: 970  PFFEENIDELKRQLLMFGYPMDGTEPMYDGRTGELIGNPIFIGIVYYQKLHHMVSDKMHA 1029

Query: 1052 RNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRK 1111
            R+ GPV  LTRQP   R R GG++FGEMERD +I HGAAA L ER+   SD   +++C  
Sbjct: 1030 RSKGPVQLLTRQPTEGRAREGGLRFGEMERDAIIGHGAAALLRERMVESSDKTIVYVCEL 1089

Query: 1112 CKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
            C  +           RK     C I      +    +PY  KLL QEL SMGI
Sbjct: 1090 CGFIGWY-------NRKKEIYECPIHGDKGVLHPIVIPYAFKLLLQELMSMGI 1135


>gi|390939172|ref|YP_006402910.1| DNA-directed RNA polymerase subunit B [Desulfurococcus fermentans DSM
            16532]
 gi|390192279|gb|AFL67335.1| DNA-directed RNA polymerase subunit B [Desulfurococcus fermentans DSM
            16532]
          Length = 1166

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 389/1220 (31%), Positives = 588/1220 (48%), Gaps = 177/1220 (14%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
            +F E GLV   ++SY  FIK  L    + F E I+    D  K    ++R          
Sbjct: 21   YFEEKGLVRQHLDSYERFIKELLPSILEEFKEIIIT---DKIKLVIEKYR---------- 67

Query: 93   LDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYI 152
            +D P + +  G +E    P   RL+N+TY++ + V V+ +         D+    REQ +
Sbjct: 68   IDSPKWTSVEGIEESKT-PMECRLRNLTYATPIYVSVRIE---------DESGYTREQEL 117

Query: 153  QKEVLSDETTNIIIGRIPVMVKSD------LCWMKGVEKGDCDFDHGGYFIIKGAEKVFV 206
            +   L D         +PVM+KS       L   + +E G+   D GGYFII G+EKV V
Sbjct: 118  K---LMD---------LPVMLKSSIDPLSKLTPQELIENGEDPRDPGGYFIINGSEKVIV 165

Query: 207  AQEQICLKRLWV-------SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            AQE +    + V       S +    V   S  +R++LI+        E  K G  V   
Sbjct: 166  AQEDLASNNIIVDVMQEGSSVTHVAKVTSVSRGRRSQLII--------ERRKDG--VFYA 215

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD------- 312
             F   + P  IL  ALG++S+ EI+       E  + L      + +   K +       
Sbjct: 216  SFQGHKFPALILMTALGLASEAEILYSTSLKPEIQTYLLPSILQVQEILPKLEIPEGASE 275

Query: 313  -EFRKGRNALKYVDKLIK------GTTFPPGESTEE-------CMNTYLFP------SLH 352
             E R+ +   +Y  K+I+       + F  G   EE        ++  L P      S  
Sbjct: 276  EEVRRLKE--EYRRKVIEEALDFIASKFIIGRPREERILRAQRLLDERLLPHIGIDSSPE 333

Query: 353  GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMA 412
               +KA F+G M+  +++   G R  D++D +RNKRL+LAG++L   L+  +    + + 
Sbjct: 334  TRLKKAVFIGQMISRIIELQLGYRGPDDKDHYRNKRLKLAGDMLAVLLRAAMMGFAREIK 393

Query: 413  KALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANP 472
            + +++ L   + +  ++     SI+T+ +  A +TG W  P  RT    G+   L R N 
Sbjct: 394  EGIEKQLAKTKKID-LKMVFKPSIITDRIQHAMATGNW--PGGRT----GVSQLLDRTNM 446

Query: 473  LQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNL--------- 523
            L TL  LRR    +       +AR  H + WG++C   TP+G N GLVKNL         
Sbjct: 447  LSTLSHLRRVVSPLARGQPHFEARELHGTQWGRMCPFETPEGANIGLVKNLALMTNVSVG 506

Query: 524  -------------GVTGLVSTSILE-PIFEQLFNSGMEKL--ADDASYSLGGKFKVFVDG 567
                         GV  +VST  ++  I + L +   E +  A + S    G  KVF++G
Sbjct: 507  IDDKEIEALLYRVGVVPIVSTRTIDGKIHKGLIDMISEDVSKATEISEKYSGWCKVFLNG 566

Query: 568  DWIGVCKDSLSFVSELRRKRRRKELPTQVEIKR--DELQSEVRIFMDAGRILRPLLVVEN 625
              IG  KD       +R  RR  ++ ++V +    ++   EV +  D+GRI RPL+V+EN
Sbjct: 567  KLIGYHKDGEELARTIRSLRRSGKISSEVNVAYIGNKYIKEVVVNTDSGRIRRPLIVIEN 626

Query: 626  ------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIK 679
                     +K L     TF+ L+  GIIE +  +EEE+   A     +  +        
Sbjct: 627  GVPKLTREHVKLLSEGKLTFEDLVKQGIIEYLDPDEEENAYIALQPSDVTAE-------- 678

Query: 680  FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQL 739
             TH E+ +  +LG++  IIP+  H+ + R +YQS   + Q++G    N   R+DT  H L
Sbjct: 679  HTHLEIWIPAILGITASIIPYPEHNQSPRNMYQS-AMAKQSLGLYAANFQRRMDTRGHFL 737

Query: 740  FYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRAS 799
             YPQRPL  T + + +G     +N    RP    GQN +VAV  + GYN ED+L+MNR+S
Sbjct: 738  HYPQRPLVETRMMNVIG-----YNE---RP---AGQNMVVAVLTYTGYNMEDALIMNRSS 786

Query: 800  LERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGAN 859
            +ERG+ RS   R Y          ++   +    N    + +    + L++DG       
Sbjct: 787  VERGLARSTFFRLYTTVEYKYPGGIQDEITIPSTNVRGYRGQKA-YEKLEEDGIVAPETQ 845

Query: 860  LQSGDIVIGKYAD--------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSV 905
            +  GD++IGK +               +  D SI ++H E+G+V  V+++ + +G     
Sbjct: 846  VSGGDVLIGKVSPPRFLSAQEYEVGGLTRQDTSIVMRHEEKGIVDTVLITMDSEGNKLIK 905

Query: 906  VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 965
            V +R +R P LGDKF+S HGQKGVLG L  Q + PFT +G+ PD++INPHAFPSR T  Q
Sbjct: 906  VRVRDLRIPELGDKFASRHGQKGVLGLLLPQYDMPFTEEGVTPDLIINPHAFPSRMTVAQ 965

Query: 966  LLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGE 1025
            L+E+  GK  AAL   I  G     TPF    ++ +   L R G+   G E +YDGRTGE
Sbjct: 966  LMESIAGKA-AALEGRIIDG-----TPFYKTPIEDLQIILRRHGYPYTGEEAMYDGRTGE 1019

Query: 1026 MVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLI 1085
            ++++ +FIG  +YQ+L HM+ DK+  R  GPV  LTRQP   R R GG+++GEME DCLI
Sbjct: 1020 LIKTPVFIGIVYYQKLHHMASDKIHARARGPVQILTRQPTEGRSRAGGLRWGEMEVDCLI 1079

Query: 1086 AHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPY-CRICDSGDDIV 1144
             HG+A  L E +   SDS  +++C  C +        +G   + +G + C I      + 
Sbjct: 1080 GHGSALLLKEAITDRSDSTIIYVCELCGS--------MGWYDRNKGKFVCPIHKEKGVLK 1131

Query: 1145 KANVPYGAKLLCQELFSMGI 1164
               V Y  KLL QEL SMGI
Sbjct: 1132 PVEVSYAFKLLLQELMSMGI 1151


>gi|363756358|ref|XP_003648395.1| hypothetical protein Ecym_8300 [Eremothecium cymbalariae DBVPG#7215]
 gi|356891595|gb|AET41578.1| Hypothetical protein Ecym_8300 [Eremothecium cymbalariae DBVPG#7215]
          Length = 1141

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 377/1184 (31%), Positives = 575/1184 (48%), Gaps = 149/1184 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++S+N F+   L+K   +    +V    DP    E   +Y  +R GQ 
Sbjct: 46   AFLKVKGLVKQHLDSFNYFVDVDLKKIIKA--NEMVLSDVDP----EFYLKYVDIRVGQR 99

Query: 92   TLDKPSFFAGNGGDEHDMFPRH-ARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
            +               DM P H  RL++MTYS+ + V ++   YT+          GR  
Sbjct: 100  S----------NSSRIDMLPPHECRLRDMTYSAPIYVDIE---YTR----------GRLI 136

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKV 204
             + K+V         IG++P+M++S+ C + G  +       +C  D GGYFI+ G EKV
Sbjct: 137  VLHKDVE--------IGKMPIMLRSNKCILNGASEETMAKLNECPLDPGGYFIVNGTEKV 188

Query: 205  FVAQEQICLKRLWVS----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKV-LSV 259
             + QEQ+   R+ V      S+       S ++R          SK   +   EK+ L  
Sbjct: 189  ILVQEQLSKNRIIVEADEKKSIVQASVTSSTHERK---------SKTYVVTKNEKIYLKH 239

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
              +S E+PI I+  A GV SD EI+ L+   C + S    +FA   +  +K + + + + 
Sbjct: 240  NSISEEVPIVIVLKACGVVSDLEIMQLV---CGNNSSYQDIFAINFEEASKMNIYTQ-QQ 295

Query: 320  ALKYVDKLIKG------TTFPPG-ESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAY 372
            AL+Y+   +K       T    G E+    +  +L       ++KA ++  M + ++ A 
Sbjct: 296  ALEYIGTKVKTIRRQKLTILQEGIEAIATTVIAHLTVEALDFREKALYIAIMTRRVVMAI 355

Query: 373  SGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDRTVRPI 428
               +  D+RD   NKRLELAG+L+    E   K      +  + K L++    +     +
Sbjct: 356  QNCKMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNNDFKASIDKVLKKPNRAEMYDALL 415

Query: 429  EYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQY 488
               + ++ +T+GL+RA STG WS    + ER +G+   L R + +  L  + R   Q + 
Sbjct: 416  SINVHSNNITSGLNRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALGMMTRISSQFEK 474

Query: 489  TGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLVSTSILEPIFEQLFNSGME 547
            + KV   R   PS +G +C   TP+GE CGLVKNL + T + +    EPI    +  G+E
Sbjct: 475  SRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEEPIKRLCYLLGVE 534

Query: 548  KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEV 607
             +    S SL   + V+++G  IG  +    FV + R  RR  ++   + I  +  Q+ V
Sbjct: 535  DIGLIDSASLHDNYGVYLNGTIIGTARYPTKFVHQFRILRRTGKISEFISIYTNIHQNAV 594

Query: 608  RIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGIIELVGTEEEEDCC 660
             I  D GRI RPL++V+N GK       +K L      F   L  G++E +   EE D  
Sbjct: 595  HIVTDGGRICRPLIIVKN-GKSMVASSHLKRLLDGKLQFDDFLKLGLVEYLDVNEENDSF 653

Query: 661  TAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQA 720
             A       KDI +      TH E++   +LG   G+IP+ +H+ + R  YQ      QA
Sbjct: 654  IAL----YEKDIHEG----ITHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQC-AMGKQA 704

Query: 721  IGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVA 780
            IG    N   R+DTL + + YPQ+P+ +T   +           ++   +L  GQNA VA
Sbjct: 705  IGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIE-----------LIDYDKLPAGQNATVA 753

Query: 781  VNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRR---SSDDMVNFGK 837
            V  + GY+ ED+LV+N++S++RG  R         E   K   + +R    + D++   +
Sbjct: 754  VMSYSGYDIEDALVLNKSSIDRGFGR--------CETRKKTTTILKRYPNHTQDIIGGMR 805

Query: 838  IQSK---IGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHS-------------IKL 881
            +      I +  SL  DG   +G  ++SG I I K   + A  S             I  
Sbjct: 806  VDENGEPIWQHKSLGPDGLGEVGMKVESGQIYINKSVPTNASDSVLTQSQSQYREAPIIY 865

Query: 882  KHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPF 941
            +  E   + +V++S +D+ +    V LRQ R P LGDKFSS HGQKGV G +  QE+ PF
Sbjct: 866  RAPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVQQEDMPF 925

Query: 942  TIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAI 1001
              QGI PDI++NPH FPSR T G+++E   GK       G+ +G   Y T F    +  +
Sbjct: 926  NDQGICPDIIMNPHGFPSRMTVGKMIELVSGKA------GVLNGTLEYGTCFGGSKLADM 979

Query: 1002 TEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLT 1061
            +E L   GF+  G + LY G TGE +++ +F GP +YQ+L HM  DK+  R  GP   LT
Sbjct: 980  SEILINNGFNYSGKDMLYSGITGECLQAYVFFGPIYYQKLKHMVLDKMHARARGPRAVLT 1039

Query: 1062 RQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQR 1121
            RQP   R R GG++ GEMERDC+IA+GA+  L ERL   SD++++ +C KC         
Sbjct: 1040 RQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMLSSDAFEVDVCDKC--------- 1090

Query: 1122 VVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
                G      +C  C S + ++K  +PY AKLL QEL SM I 
Sbjct: 1091 ----GLMGYSGWCTSCKSAEHVIKITIPYAAKLLFQELLSMNIA 1130


>gi|294660111|ref|XP_002777730.1| DEHA2G23232p [Debaryomyces hansenii CBS767]
 gi|199434470|emb|CAR66041.1| DEHA2G23232p [Debaryomyces hansenii CBS767]
          Length = 1165

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 375/1204 (31%), Positives = 584/1204 (48%), Gaps = 167/1204 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++S+N F+   L+K   +    +V    DP    E   +Y  +R G  
Sbjct: 50   AFLKVKGLVKQHLDSFNYFVDVDLKKIIKA--NELVLSDVDP----EFYLKYLDIRIGHK 103

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
            +   P      G  E  + P   RL+++TYS+ + V V+   YT+          GR+  
Sbjct: 104  STSPP------GTKEVILPPHECRLRDLTYSAPIYVDVE---YTR----------GRKII 144

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVF 205
            + K+        + IGR+P+M++S+ C + G+++       +C  D GGYFI+ G EKV 
Sbjct: 145  MHKD--------LEIGRMPIMLRSNKCILDGIDEQQMARFDECPLDPGGYFIVNGTEKVI 196

Query: 206  VAQEQICLKRLWVS-----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVY 260
            + QEQ+   R+ V      N +  +V   +  ++++  V    ++K ++I      L   
Sbjct: 197  LVQEQLSKNRIIVEADEKKNIVQASVTSSTHERKSKTYV----ITKNDNI-----YLKHN 247

Query: 261  FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNA 320
             +S +IPI I+  A G++SD EI+ L+   C        LF    +   K + F + + A
Sbjct: 248  SISEDIPIVIILKAAGITSDLEILQLV---CGQDPQYQDLFVVNFEEAAKLEIFTQ-QQA 303

Query: 321  LKYVDKLIK------GTTFPPGESTEECMNTYLFPSLHGT----KQKARFLGYMVKCLLQ 370
            L YV K +K             +   E + T +   L  +    ++KA ++  M + +L 
Sbjct: 304  LNYVGKRVKTIRRAGAPKLSQMQEGIEAIATTIIAHLTVSDLQFREKALYIAAMARRVLM 363

Query: 371  AYSGRRKCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKRMAKALQRDL 419
                 +  D+RD   NKRLELAG+L+             + K +I    K+ ++A + D 
Sbjct: 364  TMHNPKMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNSDFKANIDKILKKPSRASEFDA 423

Query: 420  YGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDL 479
                    +   + ++ +T GL+RA STG WS    + ER +G+   L R + +  L  +
Sbjct: 424  L-------LSINIHSNNITMGLNRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALGMM 475

Query: 480  RRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIF 538
             R   Q + + KV   R   PS +G +C   TP+GE CGLVKNL +   +++   E PI 
Sbjct: 476  TRISSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITSDDEELPIK 535

Query: 539  EQLFNSGMEKL--ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQV 596
            +  +  G E +   D A+    G F V V+G  IG  +  + FVS+ R  RR  ++   +
Sbjct: 536  KLCYVLGCEDILGIDSATLYADGNFGVCVNGTLIGCTRFPVKFVSDFRNLRRSGKVSAFI 595

Query: 597  EIKRDELQSEVRIFMDAGRILRPLLVV--ENMGKI------KSLEGKNYTFQALLDHGII 648
             I  +  Q  V I  D GRI RPL+++  +N  K+      K L GK + F   L  G++
Sbjct: 596  SIYTNSHQKAVHIATDGGRICRPLIIIGEKNKSKVNEHHLAKLLSGK-WAFDDFLKDGLV 654

Query: 649  ELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARR 708
            E +   EE D   A        D+ +     FTH E++   +LG   G+IP+ +H+ + R
Sbjct: 655  EYLDVNEENDSLIAL----YEHDLVEHSYQTFTHMEIEPFTVLGAVAGLIPYPHHNQSPR 710

Query: 709  VLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPR 768
              YQ      QAIG    N   R+DTL + + YPQ+P+ +T   +           ++  
Sbjct: 711  NTYQC-AMGKQAIGVIGYNQFRRIDTLLYLMVYPQQPMVKTKTIE-----------LIDY 758

Query: 769  PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKR-- 826
             +L  GQNA+VAV  + GY+ ED+LV+N++S++RG  R + +R          + +KR  
Sbjct: 759  DKLPAGQNAVVAVMSYSGYDIEDALVLNKSSIDRGFGRCQVLR-------KNTITLKRYP 811

Query: 827  RSSDDMVNFGKIQSK---IGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIK--- 880
              + D+V+  ++      I    +L  DG   +G  +++G + + K   + A  S+    
Sbjct: 812  NHTKDLVSGMRVDENGEPIFPHAALGPDGLGEVGMKVENGQVYVNKCVPNNAGESVLGSN 871

Query: 881  -------------------LKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFS 921
                                K  E   V +V++S +D+ +    V LRQ R P LGDKFS
Sbjct: 872  DQQHNQQQTAESHREVPAFYKAPEPAYVDQVMMSVSDNDQALIKVLLRQTRRPELGDKFS 931

Query: 922  SMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKG 981
            S HGQKGV G +  QE+ PF   GI PDI++NPH FPSR T G+++E   GK       G
Sbjct: 932  SRHGQKGVCGIIVQQEDLPFNDDGISPDIIMNPHGFPSRMTVGKMIELISGKA------G 985

Query: 982  ICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRL 1041
            + +G   Y T F    ++ ++  L   GFS  G + LY G TGE +++ IF GP +YQ+L
Sbjct: 986  VLNGSLEYGTCFGGSKLEEMSRTLVDKGFSYSGKDMLYSGITGECLQAYIFFGPIYYQKL 1045

Query: 1042 IHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLS 1101
             HM  DK+  R  GP   LTRQP   R R GG++ GEMERDC+IA+GA+  L ERL   S
Sbjct: 1046 KHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMLSS 1105

Query: 1102 DSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFS 1161
            D++++ IC +C             G      +C  C S + I+K  +PY AKLL QEL S
Sbjct: 1106 DAFEVDICNQC-------------GLMGYNSWCTSCKSSEYIIKMTIPYAAKLLFQELLS 1152

Query: 1162 MGIT 1165
            M I 
Sbjct: 1153 MNIA 1156


>gi|260945433|ref|XP_002617014.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Clavispora
            lusitaniae ATCC 42720]
 gi|238848868|gb|EEQ38332.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Clavispora
            lusitaniae ATCC 42720]
          Length = 1159

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 366/1196 (30%), Positives = 579/1196 (48%), Gaps = 154/1196 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++S+N F+   L+K   +    +V    DP    +   +Y  +R G  
Sbjct: 47   AFLKVKGLVKQHLDSFNYFVDVDLKKIIRA--NELVLSDVDP----QFYLKYLDIRVGHK 100

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
            +   P      G  E  M P   RL+++TYS+ + V V+   YT+          GR+  
Sbjct: 101  SSSAP------GTKEVIMAPHECRLRDLTYSAPIYVDVE---YTR----------GRKII 141

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG------DCDFDHGGYFIIKGAEKVF 205
            + K+        + IGR+P+M++S+ C + G+++       +C  D GGYFI+ G EKV 
Sbjct: 142  MHKD--------LEIGRMPIMLRSNKCVLDGIDEHQMAVFEECPIDPGGYFIVNGTEKVI 193

Query: 206  VAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLS----VYF 261
            + QEQ+   R+ V            E    + IV+    S   + K    V+S    +Y 
Sbjct: 194  LIQEQLSKNRIIV------------EADEKKAIVQASVTSSTHERKSKTYVISKNEKIYL 241

Query: 262  ----LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG 317
                ++ ++PI ++  A G+ SD EI+ L+   C   S    LFA   +   K + F + 
Sbjct: 242  KHNSIAEDVPIVVVLKAAGIVSDMEILQLV---CGANSQYQDLFAINFEEAAKLEIFTQ- 297

Query: 318  RNALKYVDKLIKG---------TTFPPG-ESTEECMNTYLFPSLHGTKQKARFLGYMVKC 367
            + AL Y+ K +K          +    G E+    +  +L  S    ++KA ++  M + 
Sbjct: 298  QQALLYIGKRVKTVRRAGAPKLSQLQEGIEAIATTVIAHLTVSDLNFREKALYIAIMARK 357

Query: 368  LLQAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDR 423
            +L         D+RD   NKRLELAG+L+    E   K      +  + K L++      
Sbjct: 358  VLMTMHNPSMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNTDFKANIDKILKKPSRTSE 417

Query: 424  TVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTR 483
                +   + ++ +T G++RA STG WS    + ER +G+   L R + +  L  + R  
Sbjct: 418  FDALLSINIHSNNITMGMNRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALGMMTRIS 476

Query: 484  QQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLVSTSILEPIFEQLF 542
             Q + + KV   R   PS +G +C   TP+GE CGLVKNL + T + +    EPI    F
Sbjct: 477  SQFEKSRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEEPIKRLCF 536

Query: 543  NSGMEKL--ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKR 600
              G E +   D A+    G + VF++G  +G  +  + FV + RR RR  ++   + I  
Sbjct: 537  ILGCEDIYSIDSATIYTEGNYGVFLNGTMVGTTRFPVKFVKDFRRLRRSGKVSEFISIFT 596

Query: 601  DELQSEVRIFMDAGRILRPLLVVENMG--------KIKSLEGKNYTFQALLDHGIIELVG 652
            +  Q+ V I  D GR+ RPL++V+ +          +K L   ++ F   L +G++E + 
Sbjct: 597  NSHQAAVHIATDGGRVCRPLIIVDEVTGQPRVEAHHLKKLLSGDWVFDDFLKYGLVEYLD 656

Query: 653  TEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 712
              EE D   A       KD+ +   ++FTH E++   +LG   G+IP+ +H+ + R  YQ
Sbjct: 657  VNEENDSLIAL----YEKDMAENPHLRFTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQ 712

Query: 713  SQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELY 772
                  QAIG    N   R+DTL + + YPQ+P+ ++   +           ++   +L 
Sbjct: 713  CAM-GKQAIGAIAYNQFRRIDTLLYFMVYPQQPMVKSKTIE-----------LIEYDKLP 760

Query: 773  NGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKR--RSSD 830
             GQNA VAV  + GY+ ED+LV+N++S++RG  R + +R          + +KR    + 
Sbjct: 761  AGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCQVVR-------KNTIVLKRYPNHTK 813

Query: 831  DMVNFGKIQSK---IGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHT--- 884
            D+V   ++      I   ++L  DG   +G  +++G +   K   + A  S+   H    
Sbjct: 814  DIVAGMRVDENGDPIFAHNALGPDGLGEVGMRIENGQVYANKQVPTNAGESVLGDHNQPQ 873

Query: 885  ---------------ERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGV 929
                           E   V +V++S +D+ +    V LRQ R P LGDKFSS HGQKGV
Sbjct: 874  SAESHRETPAYYRGPEPSYVDQVMMSVSDNDQALIKVLLRQTRRPELGDKFSSRHGQKGV 933

Query: 930  LGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRY 989
             G +   E+ PF   GI PDI++NPH FPSR T G+++E   GK       G+ +G   Y
Sbjct: 934  CGIIVQHEDMPFNDMGISPDIIMNPHGFPSRMTVGKMIELISGKA------GVLNGTLEY 987

Query: 990  ATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKV 1049
             T F    ++ +++ L   GF+  G + LY G TGE +++ IF GP +YQ+L HM  DK+
Sbjct: 988  GTCFGGSKLEDMSKILVDKGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKM 1047

Query: 1050 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHIC 1109
              R+ GP   LTRQP   R R GG++ GEMERDC+IA+GA+  L ERL   SD++++ +C
Sbjct: 1048 HARSRGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVC 1107

Query: 1110 RKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
              C             G      +C  C S + ++K  +PY AKLL QEL SM I 
Sbjct: 1108 NNC-------------GLMGYSSWCSTCKSSEHVIKMTIPYAAKLLFQELLSMNIA 1150


>gi|328771672|gb|EGF81711.1| hypothetical protein BATDEDRAFT_29606 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1167

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 377/1218 (30%), Positives = 583/1218 (47%), Gaps = 173/1218 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++S+N F++  ++    +  +  V+   DP         +  +RF  +
Sbjct: 30   AFLQTKGLVKQHLDSFNYFLETDIKLIVQANAK--VDSDIDP---------HFFLRFLDI 78

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             +  P       G  +++ P+  RL+++TY+  + V +++               G++  
Sbjct: 79   RIKPPQAEDIQKGVVYELTPQECRLRDITYAGTICVDIEY-------------VRGKQVI 125

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
            +++        NI IGR+P+M+KS  C +         + G+C  D GGYFII+G EKV 
Sbjct: 126  VKR--------NIEIGRMPIMLKSSYCVLTNKSPDEIADLGECPLDPGGYFIIRGTEKVI 177

Query: 206  VAQEQICLKRLWVSNS----MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYF 261
            + QEQ+   R+ V       +   V   +  K+++ IV           K G+ VL    
Sbjct: 178  LIQEQLSRNRIIVETDRFGCICSNVTSSTLEKKSKTIVACG--------KTGKMVLKHNS 229

Query: 262  LSTEIPIWILFFALGVSSDKEIVNLIDFTC-EDCSILNILFASIHDADNKCDEFRKGRNA 320
            L+ E+P+ ++  A+GV SD+EI  LI   C +D   L +   S+ +  +   +    R A
Sbjct: 230  LTAEVPVTVIMKAMGVESDREIAELI---CGDDLKYLALFSPSLEEGASL--KISTQRQA 284

Query: 321  LKYVDKLIKGTTFPPG---------ESTEECMNTYLFP---------SLHGTKQKARFLG 362
            L+Y+   +K  TF            E   + + T +            +   + KA ++ 
Sbjct: 285  LEYIGAKVK-VTFKTNRVGIRRDWVEEARDLLATTVLAHVPVEADDAGVLNFRPKAIYIA 343

Query: 363  YMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQR--DLY 420
             M++ +LQA       D+RD   NKRLELAG+L+     +      K    A++R  D+ 
Sbjct: 344  LMIRRVLQAVKEGGIVDDRDFIGNKRLELAGQLMS----LLFEDLFKSWISAIKRAVDIQ 399

Query: 421  GDRTVRPIEYYLDASI------LTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQ 474
              RT R  +Y   A++      +T+G+ RA S+G WS    + ER +G+   L R + + 
Sbjct: 400  LKRTNRTSQYDAAAAVSQTSRFITDGMFRAISSGNWSVKRFKMER-AGVTQVLSRLSYVS 458

Query: 475  TLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLS-TPDGENCGLVKNLGVTGLVSTSI 533
             L  L R   Q + T KV   R    S WG IC    T  GE CGL+KNL +   ++T  
Sbjct: 459  ALGMLTRISSQFEKTRKVAGPRSLQTSQWGMICLSGDTEQGEACGLIKNLALMTYITTDS 518

Query: 534  LEPIFEQL-FNSGMEKL---ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRR 589
             +    +L F  G E +   +    Y+    F VF++G  +GV +++  FVS+LRR RR 
Sbjct: 519  NDVSLRKLAFVLGTEDINLVSGSDLYATSETFLVFLNGVIMGVHRNAEQFVSDLRRLRRA 578

Query: 590  KELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE------NMGKIKSLEGKNYTFQALL 643
                  V I R   Q  + I  D GR+ RPL++VE          I+ +      F  L+
Sbjct: 579  GRTSAFVSIYRTVSQRTINISSDGGRVCRPLIIVERGIPKVTEEDIRGIIHGILRFDDLI 638

Query: 644  DHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANH 703
              G IE + T EE D   A  I  +L D  +      TH E+    +LG   G+IP+ +H
Sbjct: 639  AQGKIEYLDTNEETDSDIAVKINSVLIDQPNT-----THLEIAPFTILGAVAGLIPYPHH 693

Query: 704  DHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHN 763
            + + R  YQ      QAIG    N   R+DTL + + YP  P+ RT   + +G       
Sbjct: 694  NQSPRNTYQC-AMGKQAIGTIAYNQLTRIDTLLYLMVYPHHPMVRTRTIEMIG------- 745

Query: 764  HILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQ 823
                  +L  GQNA VAV  + GY+ ED+LV+N+AS++RG  R + +R     + +   Q
Sbjct: 746  ----FDKLPAGQNATVAVMSYSGYDIEDALVLNKASVDRGYGRCQVMRKSSTMIKSYPNQ 801

Query: 824  VKRRSSDDMVN--FGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADS-------- 873
               R +D +++   G++Q    R + LD+DG   +G  +    IVI K   +        
Sbjct: 802  TFDRLADPVLDPLTGQVQE---RYNILDNDGICGVGERVYPNQIVINKQTPTETSPRVSA 858

Query: 874  -----GAD--------------HSIKLKHTER-------GMVQKVVLSSNDDGKNFSVVS 907
                 G+D               SI  K+T          ++ +V+L++N++ +    V 
Sbjct: 859  PTNGGGSDDESSAPMLGRAVDPSSIPFKNTPMSFKYPGDAVIDQVLLTTNEEDQTLIKVL 918

Query: 908  LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLL 967
            +RQ R P LGDKFSS HGQKGV G + SQE+ PF+  G+VPD+++NPH FPSR T G+++
Sbjct: 919  IRQTRRPELGDKFSSRHGQKGVCGIIVSQEDMPFSENGVVPDVIMNPHGFPSRMTVGKMI 978

Query: 968  EAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMV 1027
            E   GK       G+ +G  +Y T F    V+ ++  L   G+S  G + L  G TGE +
Sbjct: 979  ELLAGKA------GLFAGQVQYGTAFGGSKVEDMSRILVENGYSYSGKDMLTSGITGEPL 1032

Query: 1028 RSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAH 1087
            ++ IF GP +YQ+L HM  DK+  R+ GP   LTRQP   R R GG++ GEMERDCLI H
Sbjct: 1033 QAYIFFGPVYYQKLKHMVMDKMHARSRGPRATLTRQPTEGRSRDGGLRVGEMERDCLIGH 1092

Query: 1088 GAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKAN 1147
            GA++ L ERL   SD+Y + +C +C         ++G        YC  C     +V   
Sbjct: 1093 GASSLLIERLLYSSDAYDVEVCSRCG--------IIGAWHG----YCPFCKMRSGVVTVK 1140

Query: 1148 VPYGAKLLCQELFSMGIT 1165
            +PY  KLL QEL SM + 
Sbjct: 1141 MPYACKLLFQELMSMNVV 1158


>gi|6324781|ref|NP_014850.1| Ret1p [Saccharomyces cerevisiae S288c]
 gi|2507350|sp|P22276.2|RPC2_YEAST RecName: Full=DNA-directed RNA polymerase III subunit RPC2; Short=RNA
            polymerase III subunit C2; AltName: Full=C128; AltName:
            Full=DNA-directed RNA polymerase III 130 kDa polypeptide
 gi|1420485|emb|CAA99422.1| RPC128 [Saccharomyces cerevisiae]
 gi|151945297|gb|EDN63540.1| RNA polymerase C [Saccharomyces cerevisiae YJM789]
 gi|256269629|gb|EEU04911.1| Ret1p [Saccharomyces cerevisiae JAY291]
 gi|259149688|emb|CAY86492.1| Ret1p [Saccharomyces cerevisiae EC1118]
 gi|285815086|tpg|DAA10979.1| TPA: Ret1p [Saccharomyces cerevisiae S288c]
 gi|392296534|gb|EIW07636.1| Ret1p [Saccharomyces cerevisiae CEN.PK113-7D]
          Length = 1149

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 371/1195 (31%), Positives = 584/1195 (48%), Gaps = 155/1195 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++S+N F+   L+K   +    ++    DP    E   +Y  +R G+ 
Sbjct: 50   AFLKVKGLVKQHLDSFNYFVDTDLKKIIKA--NQLILSDVDP----EFYLKYVDIRVGKK 103

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
            +         +   ++   P   RL++MTYS+ + V ++   YT+          GR   
Sbjct: 104  S--------SSSTKDYLTPPHECRLRDMTYSAPIYVDIE---YTR----------GRNII 142

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWM------KGVEKGDCDFDHGGYFIIKGAEKVF 205
            + K+V         IGR+P+M++S+ C +      K  +  +C  D GGYFI+ G EKV 
Sbjct: 143  MHKDVE--------IGRMPIMLRSNKCILYDADESKMAKLNECPLDPGGYFIVNGTEKVI 194

Query: 206  VAQEQICLKRLWVS--NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLS 263
            + QEQ+   R+ V      G   A  + +   R          +   K G+  L    ++
Sbjct: 195  LVQEQLSKNRIIVEADEKKGIVQASVTSSTHER------KSKTYVITKNGKIYLKHNSIA 248

Query: 264  TEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKY 323
             EIPI I+  A G+ SD EI+ L+   C + S    +FA   +  +K D + + + AL+Y
Sbjct: 249  EEIPIAIVLKACGILSDLEIMQLV---CGNDSSYQDIFAVNLEESSKLDIYTQ-QQALEY 304

Query: 324  VDKLIKG------TTFPPG-ESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRR 376
            +   +K       T    G E+    +  +L       ++KA ++  M + ++ A    +
Sbjct: 305  IGAKVKTMRRQKLTILQEGIEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAMYNPK 364

Query: 377  KCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKRMAKALQRDLYGDRTV 425
              D+RD   NKRLELAG+L+             + K+ I    K+  +A++ D       
Sbjct: 365  MIDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDAL----- 419

Query: 426  RPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQ 485
              +   + ++ +T+GL+RA STG WS    + ER +G+   L R + +  L  + R   Q
Sbjct: 420  --LSINVHSNNITSGLNRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALGMMTRISSQ 476

Query: 486  VQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLVSTSILEPIFEQLFNS 544
             + + KV   R   PS +G +C   TP+GE CGLVKNL + T + +    EPI +  +  
Sbjct: 477  FEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCYVL 536

Query: 545  GMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQ 604
            G+E +    S SL   + V+++G  IG  +    FV++ R  RR  ++   + I  +  Q
Sbjct: 537  GVEDITLIDSASLHLNYGVYLNGTLIGSIRFPTKFVTQFRHLRRTGKVSEFISIYSNSHQ 596

Query: 605  SEVRIFMDAGRILRPLLVVEN-MGKIKSLEGKNYT-----FQALLDHGIIELVGTEEEED 658
              V I  D GRI RPL++V +   ++K +  +        F   L  G++E +   EE D
Sbjct: 597  MAVHIATDGGRICRPLIIVSDGQSRVKDIHLRKLLDGELDFDDFLKLGLVEYLDVNEEND 656

Query: 659  CCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSS 718
               A   K ++  +        TH E++   +LG   G+IP+ +H+ + R  YQ      
Sbjct: 657  SYIALYEKDIVPSM--------THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQC-AMGK 707

Query: 719  QAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAI 778
            QAIG    N   R+DTL + + YPQ+P+ +T   +           ++   +L  GQNA 
Sbjct: 708  QAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIE-----------LIDYDKLPAGQNAT 756

Query: 779  VAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSD---DMVNF 835
            VAV  + GY+ ED+LV+N++S++RG  R E  R        K   V +R ++   D++  
Sbjct: 757  VAVMSYSGYDIEDALVLNKSSIDRGFGRCETRR--------KTTTVLKRYANHTQDIIGG 808

Query: 836  GKIQSK---IGRVDSLDDDGFPFIGANLQSGDIVIGKY-----ADSGADHSIKLKHTER- 886
             ++      I +  SL  DG   +G  +QSG I I K      AD+   +++ ++   R 
Sbjct: 809  MRVDENGDPIWQHQSLGPDGLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQTQYRE 868

Query: 887  ----------GMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ 936
                        + +V++S +D+ +    V LRQ R P LGDKFSS HGQKGV G +  Q
Sbjct: 869  APVIYRGPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQ 928

Query: 937  ENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP 996
            E+ PF  QGIVPDI++NPH FPSR T G+++E   GK       G+ +G   Y T F   
Sbjct: 929  EDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKA------GVLNGTLEYGTCFGGS 982

Query: 997  SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGP 1056
             ++ +++ L   GF+  G + LY G TGE +++ IF GP +YQ+L HM  DK+  R  GP
Sbjct: 983  KLEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGP 1042

Query: 1057 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVA 1116
               LTRQP   R R GG++ GEMERDC+IA+GA+  L ERL   SD++++ +C KC    
Sbjct: 1043 RAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDKC---- 1098

Query: 1117 NVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                     G      +C  C S ++I+K  +PY AKLL QEL SM I  +   E
Sbjct: 1099 ---------GLMGYSGWCTTCKSAENIIKMTIPYAAKLLFQELLSMNIAPRLRLE 1144


>gi|281207896|gb|EFA82075.1| RNA polymerase III [Polysphondylium pallidum PN500]
          Length = 1139

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 378/1194 (31%), Positives = 570/1194 (47%), Gaps = 143/1194 (11%)

Query: 28   KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMR 87
            K   +F    GLV   I+S+N FI   ++K   +  +   E   DP+        YA  +
Sbjct: 37   KLVPAFLKCRGLVKQHIDSFNFFINVEMKKIVKANEKLTTE--VDPA-------FYA--K 85

Query: 88   FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
            F ++ +  P+    N  +   M P+  RL++MTYS+ + V +++           K   G
Sbjct: 86   FTEIQVGMPALTEENY-ESVSMTPQKCRLRDMTYSAPITVNLEY--------VRGKQIVG 136

Query: 148  REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGA 201
            R+             N++IGRIP+M++S  C +           G+C  D GGYFI++G 
Sbjct: 137  RK-------------NVVIGRIPIMLRSSNCVLTNKSHEQLANLGECPLDPGGYFIVRGN 183

Query: 202  EKVFVAQEQICLKRLWV-SNSMGW---TVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVL 257
            EKV +  EQ+   R+ + +++ G    TV   +  +++R  + +         K G+  L
Sbjct: 184  EKVILNHEQLSKNRIIIETDAKGVPCSTVTSSTHERKSRTSIIM---------KHGKLYL 234

Query: 258  SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG 317
                 + +IP+ I    +GV +D+E+V L+     +   L+ + +S+ +  NKC +    
Sbjct: 235  KHNTFAEDIPVVIFLKGMGVETDQEVVQLVG---SEEIFLDAIASSLEEC-NKC-KVHTQ 289

Query: 318  RNALKYVDKLIKGTTFPPGES----TEECMNTYLFPSL-------HGTKQKARFLGYMVK 366
              AL Y+   IK    P G S    +EE  +      L       +  + K  ++  M++
Sbjct: 290  TQALDYLGARIKSIRKPWGMSKKSKSEEAKDILAGVVLNHVPVRRYNFRLKVIYVALMIR 349

Query: 367  CLLQAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGD 422
             ++ A   R   D++D + NKRLEL+G+L+    E   K  +A  +K   +A+ +     
Sbjct: 350  RIIIATKDRSTLDDKDYYGNKRLELSGQLISLLFEDLFKKFLAELKKATDQAILKP--NR 407

Query: 423  RTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
              V      +    LTNG   A S+G W+    + ER SG+   L R + +  L  + R 
Sbjct: 408  AMVFDFASIIRTETLTNGFVHAISSGQWNLKRFKMER-SGVTQVLSRLSFISALGMMTRI 466

Query: 483  RQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQL 541
            + Q + T K+   R   PS WG +C   TP+GE CGLVKN      V+T   E P+    
Sbjct: 467  QSQFEKTRKISGPRSLQPSQWGMLCPSDTPEGEACGLVKNFAQMTHVTTDEPEGPLLRLA 526

Query: 542  FNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIK 599
            +N G++ +       L  +  F VF++G  IG+      FV+ LR+ RR   +   + I 
Sbjct: 527  YNLGVQDILLITGEELNSRTAFLVFLNGQIIGIHNSPTLFVNTLRKMRRAGRIREFISIC 586

Query: 600  RDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIELVGT 653
            ++E    V I  D GR+ RP+++VEN         I+ L+    TF   +  G+IE +  
Sbjct: 587  KNEAHKTVSIACDGGRLCRPMIIVENGRPRVQQFHIEELKDGLRTFDDFIREGLIEYLDV 646

Query: 654  EEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQS 713
             EE D   AW    + K          TH E++   LLG    +IP+ +H+ + R  YQ 
Sbjct: 647  NEENDSFLAWNESAVNKTT--------THMEIEPFTLLGCVSALIPYPHHNQSPRNTYQC 698

Query: 714  QKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYN 773
                 QAIG    N   R+DTL + L YPQRP+ +T   + +       N++    +L  
Sbjct: 699  -AMGKQAIGAIAYNQLSRIDTLLYLLVYPQRPMCQTRTLELV-------NYV----KLPA 746

Query: 774  GQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMV 833
            G NA VAV  + GY+ ED+LVMN+ASL+RG  R    +   + V     Q    ++D ++
Sbjct: 747  GHNATVAVMSYSGYDIEDALVMNKASLDRGFGRCIVFKKQVSAVKKYANQ----TADRII 802

Query: 834  NFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---------------DSGADHS 878
                  S+  +   LD+DG    G   Q G I+I KY+               DSG   S
Sbjct: 803  PPNAETSRQPKFALLDEDGIAKPGELAQKGQILINKYSPINTVDIVANSDKIPDSGYKSS 862

Query: 879  -IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQE 937
                K+     V KV+L++ DD +    + +R  R P LGDKFSS HGQKGV G +  QE
Sbjct: 863  YTAYKYENPAFVDKVMLTTGDDDQLLIKLLMRSTRRPELGDKFSSRHGQKGVCGIIVKQE 922

Query: 938  NFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPS 997
            + PFT  GI PDI++NPH FPSR T G+++E   GK       G+  G   Y T F    
Sbjct: 923  DMPFTDLGICPDIIMNPHGFPSRMTIGKMIELLAGKA------GVLRGGFGYGTCFGGDK 976

Query: 998  VDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPV 1057
            V+ I++ L   GFS  G + +  G TGE ++  IF GP FYQ+L HM  DK+  R  GP 
Sbjct: 977  VEDISKVLISKGFSYGGKDYVTSGVTGEPLQCFIFFGPIFYQKLKHMVMDKMHARARGPT 1036

Query: 1058 HPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVAN 1117
              LTRQP   R R GG++ GEMERDCLI +GA+A + ERL   SD + ++ C+KC     
Sbjct: 1037 VTLTRQPTEGRARGGGLRLGEMERDCLIGYGASALIMERLMISSDRFTVYACKKC----- 1091

Query: 1118 VIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                   G     G +C+ C S   +    +PY  KLL QEL +M I  K   E
Sbjct: 1092 -------GFLGYEG-WCQYCKSTLQVSTLQIPYACKLLFQELQAMNIVPKLKLE 1137


>gi|349581364|dbj|GAA26522.1| K7_Ret1p [Saccharomyces cerevisiae Kyokai no. 7]
          Length = 1149

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 371/1195 (31%), Positives = 584/1195 (48%), Gaps = 155/1195 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++S+N F+   L+K   +    ++    DP    E   +Y  +R G+ 
Sbjct: 50   AFLKVKGLVKQHLDSFNYFVDTDLKKIIKA--NQLILSDVDP----EFYLKYVDIRVGKK 103

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
            +         +   ++   P   RL++MTYS+ + V ++   YT+          GR   
Sbjct: 104  S--------SSSTKDYLTPPHECRLRDMTYSAPIYVDIE---YTR----------GRNII 142

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWM------KGVEKGDCDFDHGGYFIIKGAEKVF 205
            + K+V         IGR+P+M++S+ C +      K  +  +C  D GGYFI+ G EKV 
Sbjct: 143  MHKDVE--------IGRMPIMLRSNKCILYDADESKMAKLNECPLDPGGYFIVNGTEKVI 194

Query: 206  VAQEQICLKRLWVS--NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLS 263
            + QEQ+   R+ V      G   A  + +   R          +   K G+  L    ++
Sbjct: 195  LVQEQLSKNRIIVEADEKKGIVQASVTSSTHER------KSKTYVITKNGKIYLKHNSIA 248

Query: 264  TEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKY 323
             EIPI I+  A G+ SD EI+ L+   C + S    +FA   +  +K D + + + AL+Y
Sbjct: 249  EEIPIAIVLKACGILSDLEIMQLV---CGNDSSYQDIFAVNLEESSKLDIYTQ-QQALEY 304

Query: 324  VDKLIKG------TTFPPG-ESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRR 376
            +   +K       T    G E+    +  +L       ++KA ++  M + ++ A    +
Sbjct: 305  IGAKVKTMRRQKLTILQEGIEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAMYNPK 364

Query: 377  KCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKRMAKALQRDLYGDRTV 425
              D+RD   NKRLELAG+L+             + K+ I    K+  +A++ D       
Sbjct: 365  MIDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDAL----- 419

Query: 426  RPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQ 485
              +   + ++ +T+GL+RA STG WS    + ER +G+   L R + +  L  + R   Q
Sbjct: 420  --LSINVHSNNITSGLNRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALGMMTRISSQ 476

Query: 486  VQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLVSTSILEPIFEQLFNS 544
             + + KV   R   PS +G +C   TP+GE CGLVKNL + T + +    EPI +  +  
Sbjct: 477  FEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCYVL 536

Query: 545  GMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQ 604
            G+E +    S SL   + V+++G  IG  +    FV++ R  RR  ++   + I  +  Q
Sbjct: 537  GVEDITLIDSASLHLNYGVYLNGTLIGSIRFPTKFVTQFRHLRRTGKVSEFISIYSNSHQ 596

Query: 605  SEVRIFMDAGRILRPLLVVEN-MGKIKSLEGKNYT-----FQALLDHGIIELVGTEEEED 658
              V I  D GRI RPL++V +   ++K +  +        F   L  G++E +   EE D
Sbjct: 597  MAVHIATDGGRICRPLIIVSDGQSRVKDIHLRKLLDGELDFDDFLKLGLVEYLDVNEEND 656

Query: 659  CCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSS 718
               A   K ++  +        TH E++   +LG   G+IP+ +H+ + R  YQ      
Sbjct: 657  SYIALYEKDIVPSM--------THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQC-AMGK 707

Query: 719  QAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAI 778
            QAIG    N   R+DTL + + YPQ+P+ +T   +           ++   +L  GQNA 
Sbjct: 708  QAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIE-----------LIDYDKLPAGQNAT 756

Query: 779  VAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSD---DMVNF 835
            VAV  + GY+ ED+LV+N++S++RG  R E  R        K   V +R ++   D++  
Sbjct: 757  VAVMSYSGYDIEDALVLNKSSIDRGFGRCETRR--------KTTTVLKRYANHTQDIIGG 808

Query: 836  GKIQSK---IGRVDSLDDDGFPFIGANLQSGDIVIGKY-----ADSGADHSIKLKHTER- 886
             ++      I +  SL  DG   +G  +QSG I I K      AD+   +++ ++   R 
Sbjct: 809  MRVDENGEPIWQHQSLGPDGLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQTQYRE 868

Query: 887  ----------GMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ 936
                        + +V++S +D+ +    V LRQ R P LGDKFSS HGQKGV G +  Q
Sbjct: 869  APVIYRGPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQ 928

Query: 937  ENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP 996
            E+ PF  QGIVPDI++NPH FPSR T G+++E   GK       G+ +G   Y T F   
Sbjct: 929  EDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKA------GVLNGTLEYGTCFGGS 982

Query: 997  SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGP 1056
             ++ +++ L   GF+  G + LY G TGE +++ IF GP +YQ+L HM  DK+  R  GP
Sbjct: 983  KLEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGP 1042

Query: 1057 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVA 1116
               LTRQP   R R GG++ GEMERDC+IA+GA+  L ERL   SD++++ +C KC    
Sbjct: 1043 RAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDKC---- 1098

Query: 1117 NVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                     G      +C  C S ++I+K  +PY AKLL QEL SM I  +   E
Sbjct: 1099 ---------GLMGYSGWCTTCKSAENIIKMTIPYAAKLLFQELLSMNIAPRLRLE 1144


>gi|385805646|ref|YP_005842044.1| RNA Polymerase [Fervidicoccus fontis Kam940]
 gi|383795509|gb|AFH42592.1| RNA Polymerase [Fervidicoccus fontis Kam940]
          Length = 1141

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 382/1191 (32%), Positives = 572/1191 (48%), Gaps = 148/1191 (12%)

Query: 30   AVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFG 89
            A  F  E GL    ++SYN F+            ET+++   D  +  E  +     + G
Sbjct: 31   AKKFIEEQGLSRQHLDSYNRFV------------ETMLQEIIDEQEIIETAFPEVKFKLG 78

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
            ++ + KP     +G  E ++ P  AR++N+TY+S M +++      +  V S K K    
Sbjct: 79   KIEVLKPVSREADG-SEVEITPFEARVRNITYASPMYLEITL---VENGVESIKDK---- 130

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVE-------KGDCDFDHGGYFIIKGAE 202
                          + IG +P+M+KS L  +  +          D D D GGYFII G E
Sbjct: 131  --------------VYIGDLPIMIKSKLDPLSKMSPEELIKINEDPD-DPGGYFIINGTE 175

Query: 203  KVFVAQEQICLKRLWVSN-SMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYF 261
            KV +AQE +   R+ V     G  V Y ++   +    R+  M +    K G   +S   
Sbjct: 176  KVIIAQEDMVTNRVLVDEGKAGSNVLYTAKAISSTGSYRISVMMELH--KDGTITISFGG 233

Query: 262  LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNAL 321
            +  ++P  IL  ALG   D++IV  +    E   + ++L  S+  + +         +AL
Sbjct: 234  VPGKLPFAILMRALGFEKDQDIVYAVSLNPE---VQSLLLPSLEASRS----IATVDDAL 286

Query: 322  KYVDKLIKGTTFPPG-------ESTEECMNTYLFPSLHGT----KQKARFLGYMVKCLLQ 370
             Y+     GT    G       E  ++ ++ Y FP L  +    ++K  FL  M   +L+
Sbjct: 287  DYI-----GTRVAIGQVRENRIERAKQVIDKYFFPHLGSSPKDRRKKGFFLAQMANMILE 341

Query: 371  AYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEY 430
               G R+ D+RD + NKRL+LAG+LL    +    +  K      ++ L   +  + I  
Sbjct: 342  LSLGWREPDDRDHYANKRLKLAGDLLATLFRASFKNFVKDFNYQAEKVLTRSKRFK-ISS 400

Query: 431  YLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTG 490
             + + ++T  +  A +TG W          +G+   L R N +  L  LRR    +  + 
Sbjct: 401  IVRSDVMTERIRHALATGTW------VGGKTGVSQLLDRTNWMSMLSHLRRVVSPLSRSQ 454

Query: 491  KVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFE-QLFNSGM--- 546
             +  AR  H + WG++C   TP+G NCGLVKNL +   ++  I E   E QL+  G+   
Sbjct: 455  PLFKARDLHGTQWGRMCPFETPEGPNCGLVKNLSLLTYITVGISEKKVENQLYKLGVIPV 514

Query: 547  EKLADDASYSLGGKF----KVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEI---K 599
            E+   DA  +   ++    +V+++G  IG   D     S +R  RR+ +L  ++ +   +
Sbjct: 515  EEALKDAVENNNTQYLEMTRVYLNGRHIGYYPDGEKLASTIREMRRKGDLHHEINVVYYE 574

Query: 600  RDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGIIELVG 652
            R +++ E+ +  DAGRI RPL++V N GK       I++L     TF  L+  G IE + 
Sbjct: 575  RPQIK-ELYVNTDAGRIRRPLIIVRN-GKPAVTKRDIEALRKGEKTFSDLVKEGKIEYLD 632

Query: 653  TEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 712
             EEEE+   A     LL         ++TH EL  + + G++   IP+  H+ + R  YQ
Sbjct: 633  AEEEENAYIALDPSDLL----GPNGKEYTHLELWTAGIFGVAASTIPYIEHNQSPRNTYQ 688

Query: 713  SQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELY 772
            S     QA+G    N ++R D+  H L +P++PL +T       KP      ++   E  
Sbjct: 689  SA-MVKQALGLYAANFNVRTDSRGHILHHPEKPLVQT-------KP----LEVIRYNEKP 736

Query: 773  NGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDM 832
             GQNA+VA+  + GYN ED+L+ N++S+ERG  RS   R Y  E             +D 
Sbjct: 737  AGQNAVVAIMSYTGYNIEDALIFNKSSVERGFMRSTFFRLYSTEEKKYP-----GGQEDK 791

Query: 833  VNFGKIQSKIGR----VDSLDDDGFPFIGANLQSGDIVIGKY---------------ADS 873
            +   +   KI R       LD DG       +  G+ +IGK                A  
Sbjct: 792  IEVPEAGVKIYRGFEVYKKLDPDGIISPETEVADGEALIGKTSPPRFLEEFKEYGFGASV 851

Query: 874  GADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
              D S+ +++ E+G+V  V +S   +G     V +R  R P +GDKF+S HGQKGV+G L
Sbjct: 852  RKDTSVTIRYGEKGVVDSVFISETQEGDKLVKVRVRDYRIPEIGDKFASRHGQKGVIGML 911

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
              Q + P+T +GIVPDI+INPHAFPSR T GQLLE   GK  A LGK +       ATPF
Sbjct: 912  IPQYDMPYTEEGIVPDIIINPHAFPSRMTLGQLLEMLAGKTAALLGKTVD------ATPF 965

Query: 994  ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
            +   V+ I  +L + G+S  G E +YDGRTGE++   I IG  +YQRL HM  DK   R+
Sbjct: 966  SKEPVEEIRMKLMKKGYSPDGREVMYDGRTGEIIGVPIMIGIVYYQRLHHMVADKFHARS 1025

Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
             GPV  LTRQP   R R GG++FGEMERD L+ HGA+  L ERL   SD   +++C KC 
Sbjct: 1026 RGPVQLLTRQPTEGRAREGGLRFGEMERDVLVGHGASMLLRERLLESSDKTVIYVCAKCG 1085

Query: 1114 NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
            ++           R      C I     +I    V YG KLL QEL SMGI
Sbjct: 1086 HIGWF-------DRNKNAYVCPIHGDKGEIYPVEVAYGFKLLIQELMSMGI 1129


>gi|365762885|gb|EHN04417.1| Ret1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
          Length = 1149

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 370/1195 (30%), Positives = 584/1195 (48%), Gaps = 155/1195 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++S+N F+   L+K   +    ++    DP    E   +Y  +R G+ 
Sbjct: 50   AFLKVKGLVKQHLDSFNYFVDTDLKKIIKA--NQLILSDVDP----EFYLKYVDIRVGKK 103

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
            +         +   ++   P   RL++MTYS+ + V ++   YT+          GR   
Sbjct: 104  S--------SSSTKDYLTPPHECRLRDMTYSAPIYVDIE---YTR----------GRNII 142

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWM------KGVEKGDCDFDHGGYFIIKGAEKVF 205
            + K+V         IGR+P+M++S+ C +      K  +  +C  D GGYFI+ G EKV 
Sbjct: 143  MHKDVE--------IGRMPIMLRSNKCILYDADESKMAKLNECPLDPGGYFIVNGTEKVI 194

Query: 206  VAQEQICLKRLWVS--NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLS 263
            + QEQ+   R+ V      G   A  + +   R          +   K G+  L    ++
Sbjct: 195  LVQEQLSKNRIIVEADEKKGIVQASVTSSTHER------KSKTYVITKNGKIYLKHNSIA 248

Query: 264  TEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKY 323
             EIPI I+  A G+ SD EI+ L+   C + S    +FA   +  +K D + + + AL+Y
Sbjct: 249  EEIPIAIVLKACGILSDLEIMQLV---CGNDSSYQDIFAVNLEESSKLDIYTQ-QQALEY 304

Query: 324  VDKLIKG------TTFPPG-ESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRR 376
            +   +K       T    G E+    +  +L       ++KA ++  M + ++ A    +
Sbjct: 305  IGAKVKTMRRQKLTILQEGIEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAMYNPK 364

Query: 377  KCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKRMAKALQRDLYGDRTV 425
              D+RD   NKRLELAG+L+             + K+ I    K+  +A++ D       
Sbjct: 365  MIDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDAL----- 419

Query: 426  RPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQ 485
              +   + ++ +T+GL+RA STG WS    + ER +G+   L R + +  L  + R   Q
Sbjct: 420  --LSINVHSNNITSGLNRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALGMMTRISSQ 476

Query: 486  VQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLVSTSILEPIFEQLFNS 544
             + + KV   R   PS +G +C   TP+GE CGJVKNL + T + +    EPI +  +  
Sbjct: 477  FEKSRKVSGPRALQPSQFGMLCTADTPEGEACGJVKNLALMTHITTDDEEEPIKKLCYVL 536

Query: 545  GMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQ 604
            G+E +    S SL   + V+++G  IG  +    FV++ R  RR  ++   + I  +  Q
Sbjct: 537  GVEDITLIDSASLHLNYGVYLNGTLIGSIRFPTKFVTQFRHLRRTGKVSEFISIYSNSHQ 596

Query: 605  SEVRIFMDAGRILRPLLVVEN-MGKIKSLEGKNYT-----FQALLDHGIIELVGTEEEED 658
              V I  D GRI RPL++V +   ++K +  +        F   L  G++E +   EE D
Sbjct: 597  MAVHIATDGGRICRPLIIVSDGQSRVKDIHLRKLLDGELDFDDFLKLGLVEYLDVNEEND 656

Query: 659  CCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSS 718
               A   K ++  +        TH E++   +LG   G+IP+ +H+ + R  YQ      
Sbjct: 657  SYIALYEKDIVPSM--------THLEIEPFTILGXVAGLIPYPHHNQSPRNTYQC-AMGK 707

Query: 719  QAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAI 778
            QAIG    N   R+DTL + + YPQ+P+ +T   +           ++   +L  GQNA 
Sbjct: 708  QAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIE-----------LIDYDKLPAGQNAT 756

Query: 779  VAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSD---DMVNF 835
            VAV  + GY+ ED+LV+N++S++RG  R E  R        K   V +R ++   D++  
Sbjct: 757  VAVMSYSGYDIEDALVLNKSSIDRGFGRCETRR--------KTTTVLKRYANHTQDIIGG 808

Query: 836  GKIQSK---IGRVDSLDDDGFPFIGANLQSGDIVIGKY-----ADSGADHSIKLKHTER- 886
             ++      I +  SL  DG   +G  +QSG I I K      AD+   +++ ++   R 
Sbjct: 809  MRVDENGDPIWQHQSLGPDGLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQTQYRE 868

Query: 887  ----------GMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ 936
                        + +V++S +D+ +    V LRQ R P LGDKFSS HGQKGV G +  Q
Sbjct: 869  APVIYRGPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQ 928

Query: 937  ENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP 996
            E+ PF  QGIVPDI++NPH FPSR T G+++E   GK       G+ +G   Y T F   
Sbjct: 929  EDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKA------GVLNGTLEYGTCFGGS 982

Query: 997  SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGP 1056
             ++ +++ L   GF+  G + LY G TGE +++ IF GP +YQ+L HM  DK+  R  GP
Sbjct: 983  KLEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGP 1042

Query: 1057 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVA 1116
               LTRQP   R R GG++ GEMERDC+IA+GA+  L ERL   SD++++ +C KC    
Sbjct: 1043 RAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDKC---- 1098

Query: 1117 NVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                     G      +C  C S ++I+K  +PY AKLL QEL SM I  +   E
Sbjct: 1099 ---------GLMGYSGWCTTCKSAENIIKMTIPYAAKLLFQELLSMNIAPRLRLE 1144


>gi|323302937|gb|EGA56741.1| Ret1p [Saccharomyces cerevisiae FostersB]
          Length = 1149

 Score =  504 bits (1298), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 371/1195 (31%), Positives = 584/1195 (48%), Gaps = 155/1195 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++S+N F+   L+K   +    ++    DP    E   +Y  +R G+ 
Sbjct: 50   AFLKVKGLVKQHLDSFNYFVDTDLKKIIKA--NQLILSDVDP----EFYLKYVDIRVGKK 103

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
            +         +   ++   P   RL++MTYS+ + V ++   YT+          GR   
Sbjct: 104  S--------SSSTKDYLTPPHECRLRDMTYSAPIYVDIE---YTR----------GRNII 142

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWM------KGVEKGDCDFDHGGYFIIKGAEKVF 205
            + K+V         IGR+P+M++S+ C +      K  +  +C  D GGYFI+ G EKV 
Sbjct: 143  MHKDVE--------IGRMPIMLRSNKCILYDADESKMAKLNECPLDPGGYFIVNGTEKVI 194

Query: 206  VAQEQICLKRLWVS--NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLS 263
            + QEQ+   R+ V      G   A  + +   R          +   K G+  L    ++
Sbjct: 195  LVQEQLSKNRIIVEADEKKGIVQASVTSSTHER------KSKTYVITKNGKIYLKHNSIA 248

Query: 264  TEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKY 323
             EIPI I+  A G+ SD EI+ L+   C + S    +FA   +  +K D + + + AL+Y
Sbjct: 249  EEIPIAIVLKACGILSDLEIMQLV---CGNDSSYQDIFAVNLEESSKLDIYTQ-QQALEY 304

Query: 324  VDKLIKG------TTFPPG-ESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRR 376
            +   +K       T    G E+    +  +L       ++KA ++  M + ++ A    +
Sbjct: 305  IGAKVKTMRRQKLTILQEGIEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAMYNPK 364

Query: 377  KCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKRMAKALQRDLYGDRTV 425
              D+RD   NKRLELAG+L+             + K+ I    K+  +A++ D       
Sbjct: 365  MIDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDAL----- 419

Query: 426  RPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQ 485
              +   + ++ +T+GL+RA STG WS    + ER +G+   L R + +  L  + R   Q
Sbjct: 420  --LSINVHSNNITSGLNRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALGMMTRISSQ 476

Query: 486  VQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLVSTSILEPIFEQLFNS 544
             + + KV   R   PS +G +C   TP+GE CGLVKNL + T + +    EPI +  +  
Sbjct: 477  FEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCYVL 536

Query: 545  GMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQ 604
            G+E +    S SL   + V+++G  IG  +    FV++ R  RR  ++   + I  +  Q
Sbjct: 537  GVEDITLIDSASLHLNYGVYLNGTLIGSIRFPTKFVTQFRHLRRTGKVSEFISIYSNSHQ 596

Query: 605  SEVRIFMDAGRILRPLLVVEN-MGKIKSLEGKNYT-----FQALLDHGIIELVGTEEEED 658
              V I  D GRI RPL++V +   ++K +  +        F   L  G++E +   EE D
Sbjct: 597  MAVHIATDGGRICRPLIIVSDGQSRVKDIHLRKLLDGELDFDDFLKLGLVEYLDVNEEND 656

Query: 659  CCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSS 718
               A   K ++  +        TH E++   +LG   G+IP+ +H+ + R  YQ      
Sbjct: 657  SYIALYEKDIVPSM--------THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQC-AMGK 707

Query: 719  QAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAI 778
            QAIG    N   R+DTL + + YPQ+P+ +T   +           ++   +L  GQNA 
Sbjct: 708  QAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIE-----------LIDYDKLPAGQNAT 756

Query: 779  VAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSD---DMVNF 835
            VAV  + GY+ ED+LV+N++S++RG  R E  R        K   V +R ++   D++  
Sbjct: 757  VAVMSYSGYDIEDALVLNKSSIDRGFGRCETRR--------KTTTVLKRYANHTQDIIGG 808

Query: 836  GKIQSK---IGRVDSLDDDGFPFIGANLQSGDIVIGKY-----ADSGADHSIKLKHTER- 886
             ++      I +  SL  DG   +G  +QSG I I K      AD+   +++ ++   R 
Sbjct: 809  MRVDENGXPIWQHQSLGPDGLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQTQYRE 868

Query: 887  ----------GMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ 936
                        + +V++S +D+ +    V LRQ R P LGDKFSS HGQKGV G +  Q
Sbjct: 869  APVIYRGPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQ 928

Query: 937  ENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP 996
            E+ PF  QGIVPDI++NPH FPSR T G+++E   GK       G+ +G   Y T F   
Sbjct: 929  EDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKA------GVLNGTLEYGTCFGGS 982

Query: 997  SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGP 1056
             ++ +++ L   GF+  G + LY G TGE +++ IF GP +YQ+L HM  DK+  R  GP
Sbjct: 983  KLEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGP 1042

Query: 1057 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVA 1116
               LTRQP   R R GG++ GEMERDC+IA+GA+  L ERL   SD++++ +C KC    
Sbjct: 1043 RAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDKC---- 1098

Query: 1117 NVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                     G      +C  C S ++I+K  +PY AKLL QEL SM I  +   E
Sbjct: 1099 ---------GLMGYSGWCTTCKSAENIIKMTIPYAAKLLFQELLSMNIAPRLRLE 1144


>gi|401623550|gb|EJS41646.1| ret1p [Saccharomyces arboricola H-6]
          Length = 1149

 Score =  504 bits (1298), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 370/1196 (30%), Positives = 583/1196 (48%), Gaps = 157/1196 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++S+N F+   L+K   +    ++    DP    E   +Y  +R G+ 
Sbjct: 50   AFLKVKGLVKQHLDSFNYFVDTDLKKIIKA--NQLILSDVDP----EFYLKYVDIRVGKK 103

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
            +         +   ++   P   RL++MTYS+ + V ++   YT+          GR   
Sbjct: 104  S--------SSSTKDYLTPPHECRLRDMTYSAPIYVDIE---YTR----------GRNII 142

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWM------KGVEKGDCDFDHGGYFIIKGAEKVF 205
            + K+V         IGR+P+M++S+ C +      K  +  +C  D GGYFI+ G EKV 
Sbjct: 143  MHKDVE--------IGRMPIMLRSNKCILYDADESKMAKLNECPLDPGGYFIVNGTEKVI 194

Query: 206  VAQEQICLKRLWVS--NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLS 263
            + QEQ+   R+ V      G   A  + +   R          +   K G+  L    ++
Sbjct: 195  LVQEQLSKNRIIVEADEKKGIVQASVTSSTHER------KSKTYVITKNGKIYLKHNSIA 248

Query: 264  TEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKY 323
             EIPI ++  A G+ SD EI+ L+   C + S    +FA   +  +K D + + + AL+Y
Sbjct: 249  EEIPIAVVLKAGGIVSDLEIMQLV---CGNDSSYQDIFAVNLEESSKLDIYTQ-QQALEY 304

Query: 324  VDKLIKG------TTFPPG-ESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRR 376
            +   +K       +    G E+    +  +L       ++KA ++  M + ++ A    +
Sbjct: 305  IGAKVKTMRRQKLSILQEGIEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAMYNPK 364

Query: 377  KCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKRMAKALQRDLYGDRTV 425
              D+RD   NKRLELAG+L+             + K+ I    K+  +A++ D       
Sbjct: 365  MIDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDAL----- 419

Query: 426  RPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQ 485
              +   + ++ +T+GL+RA STG WS    + ER +G+   L R + +  L  + R   Q
Sbjct: 420  --LSINVHSNNITSGLNRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALGMMTRISSQ 476

Query: 486  VQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLVSTSILEPIFEQLFNS 544
             + + KV   R   PS +G +C   TP+GE CGLVKNL + T + +    EPI +  +  
Sbjct: 477  FEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCYVL 536

Query: 545  GMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQ 604
            G+E +    S SL   + V+++G  +G  +    FV++ RR RR  ++   + I  +  Q
Sbjct: 537  GVEDITLIDSASLHLNYGVYLNGTLVGSIRFPTKFVTQFRRLRRTGKVSEFISIYSNSHQ 596

Query: 605  SEVRIFMDAGRILRPLLVVEN-MGKIKS------LEGKNYTFQALLDHGIIELVGTEEEE 657
              V I  D GRI RPL++V     ++K       LEGK   F   L  G++E +   EE 
Sbjct: 597  MAVHIATDGGRICRPLIIVSGGQSRVKDTHLRQLLEGK-LDFDDFLKLGLVEYLDVNEEN 655

Query: 658  DCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHS 717
            D   A   K ++  +        TH E++   +LG   G+IP+ +H+ + R  YQ     
Sbjct: 656  DSYIALYEKDIIPSM--------THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQC-AMG 706

Query: 718  SQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNA 777
             QAIG    N   R+DTL + + YPQ+P+ +T   +           ++   +L  GQNA
Sbjct: 707  KQAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIE-----------LIDYDKLPAGQNA 755

Query: 778  IVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSD---DMVN 834
             VAV  + GY+ ED+LV+N++S++RG  R E  R        K   V +R ++   D++ 
Sbjct: 756  TVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRR--------KTTTVLKRYANHTQDIIG 807

Query: 835  FGKIQSK---IGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA---------------- 875
              ++      I +  SL  DG   +G  ++SG I I K   + +                
Sbjct: 808  GMRVDENGEPIWQHQSLGPDGLGEVGMKVKSGQIYINKSVPTNSTDAPNPNNVNVQTQYR 867

Query: 876  DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLES 935
            +  +  +  E   + +V++S +D+ +    V LRQ R P LGDKFSS HGQKGV G +  
Sbjct: 868  EAPVIYRGPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVK 927

Query: 936  QENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFAT 995
            QE+ PF  QGIVPDI++NPH FPSR T G+++E   GK       G+ +G   Y T F  
Sbjct: 928  QEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKA------GVMNGTLEYGTCFGG 981

Query: 996  PSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTG 1055
              ++ +++ L   GF+  G + LY G TGE +++ IF GP +YQ+L HM  DK+  R  G
Sbjct: 982  SKLEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARG 1041

Query: 1056 PVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNV 1115
            P   LTRQP   R R GG++ GEMERDC+IA+GA+  L ERL   SD++++ +C KC   
Sbjct: 1042 PRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDKC--- 1098

Query: 1116 ANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                      G      +C  C S ++I+K  +PY AKLL QEL SM I  +   E
Sbjct: 1099 ----------GLMGYSGWCTTCKSAENIIKMTIPYAAKLLFQELLSMNIAPRLRLE 1144


>gi|172383|gb|AAB59324.1| RNA polymerase III [Saccharomyces cerevisiae]
          Length = 1149

 Score =  504 bits (1298), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 370/1198 (30%), Positives = 587/1198 (48%), Gaps = 161/1198 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++S+N F+   L+K   +    ++    DP    E   +Y  +R G+ 
Sbjct: 50   AFLKVKGLVKQHLDSFNYFVDTDLKKIIKA--NQLILSDVDP----EFYLKYVDIRVGKK 103

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
            +         +   ++   P   RL++MTYS+ + V ++   YT+          GR   
Sbjct: 104  S--------SSSTKDYLTPPHECRLRDMTYSAPIYVDIE---YTR----------GRNII 142

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWM------KGVEKGDCDFDHGGYFIIKGAEKVF 205
            + K+V         IGR+P+M++S+ C +      K  +  +C  D GGYFI+ G EKV 
Sbjct: 143  MHKDVE--------IGRMPIMLRSNKCILYDADESKMAKLNECPLDPGGYFIVNGTEKVI 194

Query: 206  VAQEQICLKRLWVSNS-----MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVY 260
            + QEQ+   R+ V        +  +V   +  ++++  V           K G+  L   
Sbjct: 195  LVQEQLSKNRIIVEADEKEGIVQASVTSSTHERKSKTYVI---------TKNGKIYLKHN 245

Query: 261  FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNA 320
             ++ EIPI I+  A G+ SD EI+ L+   C + S    +FA   +  +K D + + + A
Sbjct: 246  SIAEEIPIAIVLKACGILSDLEIMQLV---CGNDSSYQDIFAVNLEESSKLDIYTQ-QQA 301

Query: 321  LKYVDKLIKG------TTFPPG-ESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYS 373
            L+Y+   +K       T    G E+    +  +L       ++KA ++  M + ++ A  
Sbjct: 302  LEYIGAKVKTMRRQKLTILQEGIEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAMY 361

Query: 374  GRRKCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKRMAKALQRDLYGD 422
              +  D+RD   NKRLELAG+L+             + K+ I    K+  +A++ D    
Sbjct: 362  NPKMIDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDAL-- 419

Query: 423  RTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
                 +   + ++ +T+GL+RA STG WS    + ER +G+   L R + +  L  + R 
Sbjct: 420  -----LSINVHSNNITSGLNRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALGMMTRI 473

Query: 483  RQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLVSTSILEPIFEQL 541
              Q + + KV   R   PS +G +C   TP+GE CGLVKNL + T + +    EPI +  
Sbjct: 474  SSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLC 533

Query: 542  FNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
            +  G+E +    S SL   + V+++G  IG  +    FV++ R  RR  ++   + I  +
Sbjct: 534  YVLGVEDITLIDSASLHLNYGVYLNGTLIGSIRFPTKFVTQFRHLRRTGKVSEFISIYSN 593

Query: 602  ELQSEVRIFMDAGRILRPLLVVEN-MGKIKSLEGKNYT-----FQALLDHGIIELVGTEE 655
              Q  V I  D GRI RPL++V +   ++K +  +        F   L  G++E +   E
Sbjct: 594  SHQMAVHIATDGGRICRPLIIVSDGQSRVKDIHLRKLLDGELDFDDFLKLGLVEYLDVNE 653

Query: 656  EEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQK 715
            E D   A   K ++  +        TH E++   +LG   G+IP+ +H+ + R  YQ   
Sbjct: 654  ENDSYIALYEKDIVPSM--------THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQC-A 704

Query: 716  HSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQ 775
               QAIG    N   R+DTL + + YPQ+P+ +T   +           ++   +L  GQ
Sbjct: 705  MGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIE-----------LIDYDKLPAGQ 753

Query: 776  NAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSD---DM 832
            NA VAV  + GY+ ED+LV+N++S++RG  R E  R        K   V +R ++   D+
Sbjct: 754  NATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRR--------KTTTVLKRYANHTQDI 805

Query: 833  VNFGKIQSK---IGRVDSLDDDGFPFIGANLQSGDIVIGKY-----ADSGADHSIKLKHT 884
            +   ++      I +  SL  DG   +G  +QSG I I K      AD+   +++ ++  
Sbjct: 806  IGGMRVDENGDPIWQHQSLGPDGLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQTQ 865

Query: 885  ER-----------GMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
             R             + +V++S +D+ +    V LRQ R P LGDKFSS HGQKGV G +
Sbjct: 866  YREAPVIYRGPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGII 925

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
              QE+ PF  QGIVPDI++NPH FPSR T G+++E   GK       G+ +G   Y T F
Sbjct: 926  VKQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKA------GVLNGTLEYGTCF 979

Query: 994  ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
                ++ +++ L   GF+  G + LY G TGE +++ IF GP +YQ+L HM  DK+  R 
Sbjct: 980  GGSKLEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARA 1039

Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
             GP   LTRQP   R R GG++ GEMERDC+IA+GA+  L ERL   SD++++ +C KC 
Sbjct: 1040 RGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDKC- 1098

Query: 1114 NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                        G      +C  C S ++I+K  +PY AKLL QEL SM I  +   E
Sbjct: 1099 ------------GLMGYSGWCTTCKSAENIIKMTIPYAAKLLFQELLSMNIAPRLRLE 1144


>gi|451995160|gb|EMD87629.1| hypothetical protein COCHEDRAFT_1206799 [Cochliobolus heterostrophus
            C5]
          Length = 1215

 Score =  504 bits (1298), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 373/1201 (31%), Positives = 565/1201 (47%), Gaps = 163/1201 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++SYN F+   L+K   +     V   +DP    E    Y  +R    
Sbjct: 114  AFLKTKGLVKQHVDSYNHFVDVDLKKIIKA--NRFVRSDFDPKFLLE----YTDIRV--- 164

Query: 92   TLDKPSFFAGNGGDEHDM-------FPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKF 144
                    + N  +E D+        P   RL++MTY++ + V +   +YT+      + 
Sbjct: 165  -------LSPNRQEEDDLEHHRSTITPNECRLRDMTYAAPIVVDI---IYTRGNAKVKR- 213

Query: 145  KTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFII 198
                             T I IGR+P+M+KS+ C + G          +C  D GGYFI 
Sbjct: 214  -----------------TGIKIGRMPIMLKSNKCVLAGKNDREMAVMEECPLDPGGYFIT 256

Query: 199  KGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLS 258
            +G EKV + QEQ+   R+ V ++ G   A  + +   R     V   K      G   L 
Sbjct: 257  RGQEKVILVQEQLNKNRVIVESAKGIMQASVTSSTHERRTKTYVIQKK------GLMYLR 310

Query: 259  VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGR 318
               LS EIPI  +  ALGV SDKEI+ +I    ED +  +  FA   +A  + ++     
Sbjct: 311  HNTLSEEIPIVFVMKALGVHSDKEILLMI--AGEDSAYQDN-FAINFEACAR-EQIHTQE 366

Query: 319  NALKYVDKLIKGTTFPPGESTE--------ECMNTYLFP--SLHGT--KQKARFLGYMVK 366
             AL+Y+   ++    P G S          EC++  + P   + GT  + KA ++  M +
Sbjct: 367  RALEYIGHRVRLVKKPLGTSRNRNYHLEAIECLSNVVLPHVPVEGTNYRPKALYVALMAR 426

Query: 367  CLLQAYSGRRKCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKRMAKAL 415
             +L A    +  D+RD   NKRLEL+G++L             + K+ I    K+  +A 
Sbjct: 427  RVLMAMQDPKLVDDRDYVGNKRLELSGQMLSLLFEDHFKRFNHDFKLSIDKVLKKQVRAQ 486

Query: 416  QRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQT 475
            + D +         + +  + +T G+ RA +TG WS    + ER +G+   L R + +  
Sbjct: 487  EFDAFS-------HFSVHKNHITMGVERAIATGNWSLKRFKMER-AGVTHVLSRLSYIAA 538

Query: 476  LVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLVSTSIL 534
            L  + R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL + T + +    
Sbjct: 539  LGMMTRISSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTEDDD 598

Query: 535  EPIFEQLFNSGMEKLADDASYSLG--GKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL 592
            +P+ + +F  G E +       +   G + V ++G  I V      F++  R+ RR   +
Sbjct: 599  DPVRKIVFMLGAEDICSQTGEEIHAEGVYSVCLNGTPIAVTDTPKRFLNSFRKLRRMGRI 658

Query: 593  PTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHG 646
                 I  D    EV I  D GRI RP+++VEN         +K+L      F+  L  G
Sbjct: 659  SEFTSIHIDHDHCEVHIATDEGRICRPMIIVENQHSKVTSRYLKALRRGTMEFEDFLTRG 718

Query: 647  IIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHA 706
            ++E + T EE D      I     DI +      TH E++   +LG   G+IP+ +H+ +
Sbjct: 719  LVEYLDTNEENDT----NIALRESDINEHT----THLEIEPFTILGAVAGLIPYPHHNQS 770

Query: 707  RRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHIL 766
             R  YQ      QAIG    N   R+DTL + + YPQ+P+ +T   +           + 
Sbjct: 771  PRNTYQCAM-GKQAIGAIAYNQFNRIDTLLYLMVYPQQPMVKTRTIE-----------LT 818

Query: 767  PRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSE----HIRSYKAEVDNKEM 822
               +L  GQNA VAV  + GY+ ED+L++N+AS +RG  R +    H+   K   +N   
Sbjct: 819  KYDKLPAGQNATVAVMSYSGYDIEDALILNKASCDRGFGRCQVFKKHVTPLKTYANN--- 875

Query: 823  QVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVI---------GKYADS 873
                  + D +N G +        ++  DG   +GA L++GD  +         G  ++ 
Sbjct: 876  ------TSDRINAGALDVANPNHQAIGQDGIAQVGARLEAGDAFLLKSIPQDTAGPASNL 929

Query: 874  GADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
              D   + K  +   + K  ++ N+ G     + +RQ R P LGDKFSS HGQKG  G +
Sbjct: 930  YKDKPERYKLPDCSYIDKACITENESGTTLIKLLMRQTRRPELGDKFSSRHGQKGTTGLI 989

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
              QE+ PF  QGI PDI++NPH FPSR T G+++E   GK       G+ +G   Y T F
Sbjct: 990  VQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMMELLSGKA------GVLNGTLEYGTAF 1043

Query: 994  ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
               +V+ +++ L   GFS  G + L  G TGE  +   F GP +YQ+L HM +DK+  R 
Sbjct: 1044 GGSTVEDMSQILVEKGFSYTGKDYLTSGITGEAHQFYTFFGPIYYQKLKHMVQDKMHSRA 1103

Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
             GP   LTRQP   R R GG++ GEMERDCLIA+GA+  L ERL   SD++ + +C KC 
Sbjct: 1104 RGPRAILTRQPTEGRARDGGLRLGEMERDCLIAYGASQLLLERLMISSDAHNVDVCEKC- 1162

Query: 1114 NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMG--ITLKFDTE 1171
                        G+     YC++C+S   + K  +PY AKLL QEL SM   +T+  + E
Sbjct: 1163 ------------GQMGYSGYCKLCESEKAVRKITMPYAAKLLIQELGSMNVKVTIGLEDE 1210

Query: 1172 F 1172
            F
Sbjct: 1211 F 1211


>gi|242398379|ref|YP_002993803.1| DNA-directed RNA polymerase subunit B [Thermococcus sibiricus MM 739]
 gi|242264772|gb|ACS89454.1| DNA-directed RNA polymerase subunit B [Thermococcus sibiricus MM 739]
          Length = 1118

 Score =  504 bits (1297), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 377/1194 (31%), Positives = 591/1194 (49%), Gaps = 166/1194 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            ++++E GLV   ++SYN FI++G+Q+    F       G  P            ++FG+V
Sbjct: 20   AYWDEKGLVRQHLDSYNAFIEHGMQEVISEF------EGVKPDIPD------FEVKFGRV 67

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             L +P F   +G     ++P  AR++N+TYS+ + + +   V             G EQ 
Sbjct: 68   RLGEPEFQEAHG-QRKPLYPIDARIRNLTYSAPVFLGMIPVV------------KGIEQ- 113

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
                    E   + IG +PVM+KS +C +        +  G+   D GGYFII G+E+V 
Sbjct: 114  --------EPVEVRIGELPVMLKSKICRLYNLSDEELIAHGEDPKDPGGYFIINGSERVI 165

Query: 206  VAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVD-------MSKFEDIKGGEKVLS 258
            V+ E +   R  V          + + ++NR I +          +   E  K G   +S
Sbjct: 166  VSIEDLAPNRTLV----------EIDERQNRYIAKCFSYRHGYRALITVERRKDGLLYVS 215

Query: 259  VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGR 318
            +  +   +    +  ALG+ SDKEIV   D    +  +  +LF ++ DA +     +   
Sbjct: 216  IPNVPGVLKFVHIMRALGLESDKEIV---DAVGNNPEVQQVLFDNLEDASD----VQTQE 268

Query: 319  NALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLHGTKQ----KARFLGYMVKC 367
             AL Y+     G    PG+  E         ++  L P +  + +    KA +LG M   
Sbjct: 269  EALDYI-----GKRAMPGQPKEYRLRRAHSIIDNNLLPHMGVSPEDRIRKAYYLGMMALK 323

Query: 368  LLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRM----AKALQRDLYGDR 423
            + +   G R+ D++D + +KRL+LAG+LL+   +V      K M     K  QR   G++
Sbjct: 324  VTELSLGLREEDDKDHYASKRLKLAGDLLKDLFRVAFGQLVKDMQYQLTKTYQRK--GEK 381

Query: 424  -TVRPIEYYLDASI----LTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVD 478
             T + I+ ++  S+    LT  +  A +TGAW  P  RT    G+   L R N + TL  
Sbjct: 382  YTFQDIQRFVRNSVRPDVLTERIEHALATGAW--PGGRT----GVSQLLDRTNYMSTLSH 435

Query: 479  LRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEP-I 537
            LRR    +       +AR  H +HWG+IC   TP+G NCGLVKNL +   ++T+I E  +
Sbjct: 436  LRRVTSPLSREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLSLMSQITTAIPEEEV 495

Query: 538  FEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVE 597
            F  L + G+  + +         ++V+++G  +G  KD +  +++++  RR   +   + 
Sbjct: 496  FAYLESLGIVHIEERRPEP--DDWRVYLNGVLVGTYKDGVELINKIKTDRREGRISEVIN 553

Query: 598  IKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIELV 651
            +   E   E+ I  D GR+ RPL++VEN         +++++     +  L+  G+IE +
Sbjct: 554  VAYYEDVREIYINSDEGRVRRPLIIVENGVPKLTKDHVEAIKKGTLKWSDLIRIGVIEYL 613

Query: 652  GTEEEEDCCTA---WGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARR 708
              EEEE+   A   W +             + TH E+  + +LGL   ++P+  H+ A R
Sbjct: 614  DAEEEENAYVATWPWEVTE-----------EHTHLEIMPATILGLPASLVPYPEHNAAPR 662

Query: 709  VLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPR 768
              Y +   + Q++G    N  IRVDT  H + YPQ PL  + I + +G           R
Sbjct: 663  NTYGA-GMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMEAVG--------FEQR 713

Query: 769  PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEM--QVKR 826
            P    GQN IVAV  + GYN ED+++MN+AS+ERG+ RS   R+Y+AE + K M  Q  +
Sbjct: 714  P---AGQNFIVAVLSYSGYNMEDAVIMNKASIERGLARSTFFRTYEAE-EKKYMGGQTDK 769

Query: 827  RSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADS---------GA-- 875
                D    G +  K  R  +LD+DG  F  + +Q  D+++ + +           GA  
Sbjct: 770  FEIPDPTVRGFLGEKYYR--NLDEDGIAFPESKVQGKDVLVARTSPPRFLEEQTSLGAGI 827

Query: 876  -----DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVL 930
                 + SI ++  E G++ K++++   DG     V++R +R P  GDKF+S HGQKGV+
Sbjct: 828  LQGRRETSITMRPGEEGIIDKIIITETGDGTKLVKVTVRDLRIPEFGDKFASRHGQKGVI 887

Query: 931  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYA 990
            G +  QE+ P+T  GIVPD+++NPH  PSR T GQL+EA  GK +A+L      G +   
Sbjct: 888  GLIVPQEDMPWTENGIVPDLIVNPHGIPSRMTVGQLIEAIGGK-VASL-----KGRRIDG 941

Query: 991  TPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVK 1050
            T F     + + ++L   GF   G E +YDG TG    + IF+G  +YQRL HM  DK+ 
Sbjct: 942  TAFIGEPEEKLRKELEELGFKHSGREVMYDGITGRKFEADIFVGVIYYQRLHHMVADKLH 1001

Query: 1051 FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICR 1110
             R+ GPV  LT+QP   R R GG++FGEMERD LI HGA+  L ERL   SD  +  IC 
Sbjct: 1002 ARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLIGHGASMLLVERLLEESDKTEAWICE 1061

Query: 1111 KCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
             C ++A      V   R+ +  YC +C   ++I K  + Y  KLL  E+ +MGI
Sbjct: 1062 SCGHLA------VEDKRRDK-IYCPVCGEEENISKVEMSYAFKLLLDEIKAMGI 1108


>gi|164661167|ref|XP_001731706.1| hypothetical protein MGL_0974 [Malassezia globosa CBS 7966]
 gi|159105607|gb|EDP44492.1| hypothetical protein MGL_0974 [Malassezia globosa CBS 7966]
          Length = 1131

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 370/1203 (30%), Positives = 559/1203 (46%), Gaps = 164/1203 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            ++    GLV   I+S+N F+   L+    +     V    DP            +++  +
Sbjct: 27   AYLQVKGLVKQHIDSFNYFVDVDLKNILRA--NERVTSDIDPK---------FYLKYTNI 75

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
            T+  P   A     +  + P   RL+++TYS+ + V +++              T   + 
Sbjct: 76   TVGHPER-ADPDAIDRSITPHECRLRDITYSAFIYVDIEY--------------TRGGKI 120

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG------DCDFDHGGYFIIKGAEKVF 205
            ++++       N+ IGR+P+M++S+ CW+ G ++       +C  D GGYF++KG EKV 
Sbjct: 121  VRRK-------NVPIGRLPIMLRSNKCWLAGQDEATLARMNECPLDPGGYFVVKGTEKVI 173

Query: 206  VAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLS----VYF 261
            + QEQ+   R+ V            E    + +V+    S   + K    VL+    +Y 
Sbjct: 174  LVQEQLSKNRIIV------------EADSRKEVVQASVTSSTHERKSKSYVLTKHGLIYV 221

Query: 262  ----LSTEIPIWILFFALGVSSDKEIVNLI---DFTCEDCSILNILFASIHDADNKCDEF 314
                L+ +IPI ++F A+G+ SDKEI+ L+   D T  +   +N+  A+      K   F
Sbjct: 222  KHNSLNEDIPIVVVFRAMGIQSDKEILQLVAGQDETYAELFSINLERAA------KLGIF 275

Query: 315  RKGRNALKYVDKLIK------GTTFPPGESTEECMNTYLF---PSLHGT-KQKARFLGYM 364
             + + AL Y+   +K      G      +   E + T +    P   G  + K  ++  M
Sbjct: 276  TR-QQALDYMGARVKIMRRGVGMRRTASDEALEVLATVIMAHVPVEQGDFRNKTMYIATM 334

Query: 365  VKCLLQAYSGRRKCDNRDDFRNKRLELAGELLER-----------ELKVHIAHARKRMAK 413
            V+ +L       K D+RD   NKRLELAG+LL             +LK +I    K+  +
Sbjct: 335  VRRVLVCMVDESKVDDRDYVGNKRLELAGQLLALLFEDLFKKFNFDLKTNIDKVLKKPNR 394

Query: 414  ALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPL 473
              + D Y        +++     +T G  RA STG WS    + ER +G+   L R + +
Sbjct: 395  TSEFDAYN-------QFFYHGDYITAGFVRAISTGNWSLKRFKMER-AGVTHVLSRLSYI 446

Query: 474  QTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI 533
              L  + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T +
Sbjct: 447  SALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDV 506

Query: 534  LE-PIFEQLFNSGME--KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRK 590
             E PI    +  G+E   L   A       + VF++G+ +GV      FV++ RR RR  
Sbjct: 507  DEAPIVRLCYALGLEDINLLTGAELYQPSTYIVFLNGNVVGVTLTPHRFVAQFRRLRRAG 566

Query: 591  ELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLD 644
             +   V I  +     V I  D GRI RP+++VEN         I+ L+    TF   L 
Sbjct: 567  LISEFVGIYTNTHHQTVNIASDGGRICRPMIIVENGRPQVTSEHIRQLQAGTMTFDDFLR 626

Query: 645  HGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHD 704
             G++E +   EE D   A          E       TH E++   LLG   G+IP+ +H+
Sbjct: 627  RGLVEYLDVNEENDSNIAL--------FEHSIGPSTTHLEIECFTLLGACAGLIPYPHHN 678

Query: 705  HARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNH 764
             + R  YQ      QAIG    N   R+DTL + + YPQ+P+  T   + +G        
Sbjct: 679  QSPRNTYQC-AMGKQAIGAIGYNQLNRIDTLLYLMVYPQKPMVSTKTIELIGYD------ 731

Query: 765  ILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQV 824
                 +L  GQNA+VAV    GY+ ED+LVMN ASL+RG  R + +R     +       
Sbjct: 732  -----KLPAGQNAMVAVMSFSGYDIEDALVMNCASLDRGFGRCQVMRKQSTVLRKYANGT 786

Query: 825  KRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHS------ 878
              R +D  VN  +    + R ++L+ DG    G  L+ GD+ I K   + A+ +      
Sbjct: 787  FDRLADAPVN--EHGEPLRRFEALEADGISGAGERLEPGDVYINKQIPTNANDNSAGTML 844

Query: 879  ----------IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKG 928
                      +  K    G + +V++S  D  +      +RQ R P LGDKFSS HGQKG
Sbjct: 845  NSAITYKNAPLSYKSPVEGYIDQVLISDTDSDQTLVKSLIRQTRRPELGDKFSSRHGQKG 904

Query: 929  VLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKR 988
            V+G +  Q + PF  QGI PDI++NPH FPSR T G+++E   GK       G+  G + 
Sbjct: 905  VIGLIVPQADMPFNDQGICPDIIMNPHGFPSRMTVGKMIELVSGKA------GVLRGTQE 958

Query: 989  YATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDK 1048
            Y T F    V+ ++  L   G+   G E +  G TGE + + ++ GP +YQ+L HM  DK
Sbjct: 959  YGTAFGGSKVEDMSRILVEHGYHYGGKEYMTSGMTGEPLEAYVYFGPIYYQKLKHMVMDK 1018

Query: 1049 VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHI 1108
            +  R  GP   LTRQP   R R GG++ GEMERDCLI +GA   L ERL   SD++ ++ 
Sbjct: 1019 MHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGATQLLLERLMVSSDAFVVNA 1078

Query: 1109 CRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
            C +C             G      YC  C S   +VK  VPY  KLL QEL +M +  + 
Sbjct: 1079 CEEC-------------GLLGYNGYCGYCKSSKHVVKLTVPYATKLLFQELMAMQVVPRL 1125

Query: 1169 DTE 1171
              E
Sbjct: 1126 VLE 1128


>gi|255721739|ref|XP_002545804.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Candida
            tropicalis MYA-3404]
 gi|240136293|gb|EER35846.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Candida
            tropicalis MYA-3404]
          Length = 1159

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 370/1201 (30%), Positives = 579/1201 (48%), Gaps = 159/1201 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++SYN F+   L+K   +    +V    DP    E   +Y  +R G  
Sbjct: 48   AFLKVKGLVKQHLDSYNYFVDVDLKKIIKA--NELVLSDVDP----EFYVKYLDIRVGHK 101

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
            +  KP      G  E  + P   RL+++TYS+ + V V+   YT+ R      K  R   
Sbjct: 102  STAKP------GVKEVILPPHECRLRDLTYSAPIYVDVE---YTRGR------KIIRHND 146

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG------DCDFDHGGYFIIKGAEKVF 205
            ++            IGR+PVM++S+ C ++G+ +       +C  D GGYF++ G EKV 
Sbjct: 147  LE------------IGRMPVMLRSNKCMLEGMSEASMAQVEECPLDPGGYFVVNGTEKVI 194

Query: 206  VAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLS----VYF 261
            + QEQ+   R+ V            E    + IV+    S   + K    V++    +Y 
Sbjct: 195  LVQEQLSKNRIIV------------EADEKKAIVQASVTSSTHERKSKTYVITKNDKIYL 242

Query: 262  ----LSTEIPIWILFFALGVSSDKEIVNLI---DFTCEDCSILNILFASIHDADNKCDEF 314
                +S +IPI I+  A G++SD EI+ L+   D   +D  ++N   A+      K + F
Sbjct: 243  KHNSVSEDIPIVIILKAAGITSDLEILQLVCGTDPNYQDLFVVNFEEAA------KLEVF 296

Query: 315  RKGRNALKYVDKLIKG---------TTFPPG-ESTEECMNTYLFPSLHGTKQKARFLGYM 364
             + + AL YV K +K          +    G E+    +  +L  S    ++KA ++  M
Sbjct: 297  TQ-QQALLYVGKRVKTIRRAGAPKLSQLQEGIEAIATTIVAHLTVSDLQFREKALYIATM 355

Query: 365  VKCLLQAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLY 420
             + ++ A    +  D+RD   NKRLELAG+L+    E   K   +  +  + K L++   
Sbjct: 356  ARRVVMAMHNPKMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNSDFKANIDKVLKKPSR 415

Query: 421  GDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLR 480
                   +   + ++ +T GL+RA STG WS    + ER +G+   L R + +  L  + 
Sbjct: 416  TSEFDALLSINIHSNNITMGLNRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALGMMT 474

Query: 481  RTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFE 539
            R   Q + + KV   R   PS +G +C   TP+GE CGLVKNL +   ++T   E P+ +
Sbjct: 475  RISSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEAPVKK 534

Query: 540  QLFNSGMEKL--ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVE 597
                 G E +   D A+    G F V+++G  IG  +    FV++ R  RR  ++   + 
Sbjct: 535  LCIALGCEPIYALDSATLHSEGNFGVYLNGTLIGTTRFPQKFVNDFRHLRRNGKVSAFIS 594

Query: 598  IKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIELV 651
            I  +     V I  D GRI RPL++VEN         +  L  + ++F   L HG++E +
Sbjct: 595  IYTNTHHQAVHIATDGGRICRPLIIVENGESKVTAEHLAKLLNQEWSFDDFLKHGLVEYL 654

Query: 652  GTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLY 711
               EE D   A       +DI        TH E++   +LG   G+IP+ +H+ + R  Y
Sbjct: 655  DVNEENDSLIAL----YEEDINANSSTTVTHMEIEPFTVLGAVAGLIPYPHHNQSPRNTY 710

Query: 712  QSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPEL 771
            Q      QAIG    N   R+DTL + + YPQ+P+ +T   +           ++   +L
Sbjct: 711  QC-AMGKQAIGAIAYNQFRRIDTLLYFMVYPQQPMVKTKTIE-----------LIDYDKL 758

Query: 772  YNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKR--RSS 829
              GQNA VAV  + GY+ ED+LV+N++SL+RG  R + +R          +Q+K+    +
Sbjct: 759  PAGQNATVAVMSYSGYDIEDALVLNKSSLDRGFGRCQVVR-------KNTVQLKKYPNHT 811

Query: 830  DDMVNFGKIQSKIGRV---DSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIK------ 880
             D+++  ++      +    +L  DG   +G+ + +G +   K   + +  S        
Sbjct: 812  QDILSGMRVDENNNPIFPHQALGPDGLGEVGSRIHNGQVFANKCVPTNSGESALGGPQQD 871

Query: 881  -------------LKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQK 927
                          K  E   + +V++S +D+ +    V LRQ R P LGDKFSS HGQK
Sbjct: 872  DRQMDRHREAPAFYKGPEPSYIDQVMMSVSDNDQALIKVLLRQTRRPELGDKFSSRHGQK 931

Query: 928  GVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLK 987
            GV G +  QE+ PF   GI PDI++NPH FPSR T G+++E   GK       G+ +G  
Sbjct: 932  GVCGIIVQQEDMPFNDYGISPDIIMNPHGFPSRMTVGKMIELISGKA------GVLNGSL 985

Query: 988  RYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSED 1047
             Y T F    ++ +++ L   GFS  G + L  G TGE +++ IF GP +YQ+L HM  D
Sbjct: 986  EYGTCFGGSKLEDMSKILVEKGFSYSGKDMLQSGITGECLQAYIFFGPIYYQKLKHMVLD 1045

Query: 1048 KVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMH 1107
            K+  R  GP   LTRQP   R R GG++ GEMERDC+IA+GA+  L ERL   SD++++ 
Sbjct: 1046 KMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVD 1105

Query: 1108 ICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLK 1167
            +C KC             G      +C  C S ++++K  +PY AKLL QEL SM I  +
Sbjct: 1106 VCNKC-------------GLMGYNNWCTTCQSSENVIKMTIPYAAKLLFQELLSMNIAPR 1152

Query: 1168 F 1168
             
Sbjct: 1153 L 1153


>gi|10963|emb|CAA41631.1| DNA-directed RNA polymerase [Drosophila melanogaster]
          Length = 1135

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 378/1198 (31%), Positives = 574/1198 (47%), Gaps = 154/1198 (12%)

Query: 28   KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMR 87
            K   +F    GLV   I+S+N FI   ++K   +    +V  G DP        +Y  +R
Sbjct: 36   KLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVKA--NELVTSGADPL----FYLKYLDVR 89

Query: 88   FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
             G+  +D   F        H+      RL++ TYS+ + V +++   TQ+          
Sbjct: 90   VGKPDIDD-GFNITKATTPHE-----CRLRDTTYSAPITVDIEYTRGTQR---------- 133

Query: 148  REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGA 201
                I++        N++IGR+P+M++S+ C + G  +       +C  D GGYF+++G 
Sbjct: 134  ----IKR-------NNLLIGRMPLMLRSN-CALTGKSEFELSKLNECPLDPGGYFVVRGQ 181

Query: 202  EKVFVAQEQICLKRLWVSNSMGWT---VAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLS 258
            EKV + QEQ+   ++   +  G     V   +  K++R +V    +SK      G+  L 
Sbjct: 182  EKVILIQEQLSWNKMLTEDFNGVVQCQVTSSTHEKKSRTLV----LSKH-----GKYYLK 232

Query: 259  VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGR 318
               ++ +IPI ++F ALGV SD+EI +LI     D    N   AS+ DA N    F + R
Sbjct: 233  HNSMTDDIPIVVIFKALGVVSDQEIQSLIGI---DSKSQNRFGASLIDAYN-LKVFTQQR 288

Query: 319  NALKY------VDKLIKGTTFPPGESTEECMNTYLFPSL----HGTKQKARFLGYMVKCL 368
             AL+Y      V +    TT  P E   E + T +   +       + KA ++  MV+ +
Sbjct: 289  -ALEYMGSKLVVKRFQSATTKTPSEEARELLLTTILAHVPVDNFNLQMKAIYVSMMVRRV 347

Query: 369  LQAYSGRRKCDNRDDFRNKRLELAGELLER-----------ELKVHIAHARKRMAKALQR 417
            + A   +   D+RD + NKRLELAG LL             ELK  IA       KA Q 
Sbjct: 348  MAAELDKTLFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELKT-IADKNIPKVKAAQF 406

Query: 418  DLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLV 477
            D+           ++ A+ +T GL  A S+G W+    + ER +G+   L R + +  L 
Sbjct: 407  DVVK---------HMRAAQITAGLESAISSGNWTIKRFKMER-AGVTQVLSRLSYISALG 456

Query: 478  DLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-P 536
             + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + E P
Sbjct: 457  MMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSYTPEGEACGLVKNLALMTHITTEVEERP 516

Query: 537  IFEQLFNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPT 594
            +    FN+G+E + + +   +     F VF++G+ +G+  +    V  LR  RR+  + +
Sbjct: 517  VMIVAFNAGVEDIREVSGNPINNPNVFLVFINGNVLGLTLNHKHLVRNLRYMRRKGRMGS 576

Query: 595  QVEIKRDELQSEVRIFMDAGRILRPLLVVEN---MGKIKSLEGKNY---TFQALLDHGII 648
             V +     Q  + I  D GR+ RP ++VEN   + K   L+  N     F   L  G+I
Sbjct: 577  YVSVHTSYTQRCIYIHTDGGRLCRPYVIVENRRPLVKQHHLDELNRGIRKFDDFLLDGLI 636

Query: 649  ELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARR 708
            E +   EE D   AW         ED+   + TH E++   LLG+  G++P+ +H+ + R
Sbjct: 637  EYLDVNEENDSFIAWN--------EDQIEDRTTHLEIETFTLLGVCAGLVPYPHHNQSPR 688

Query: 709  VLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPR 768
              YQ      QA+G    N + R+D+L + L YP  P+ ++   +           +   
Sbjct: 689  NTYQCAM-GKQAMGMIGYNHNNRIDSLMYNLVYPHAPMVKSKTIE-----------LTNF 736

Query: 769  PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRS 828
             +L  GQNA VAV  + GY+ ED+L++N+AS++RG  R    ++ K  V     Q   R 
Sbjct: 737  DKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRI 796

Query: 829  SDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHS---------- 878
               M +       I + D LD DG    G  +Q+  I+I K   +    +          
Sbjct: 797  MGPMKD-ALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVP 855

Query: 879  -----IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
                 I  K  E   +++V++S+N +      + LRQ R P  GDKFSS HGQKGV G +
Sbjct: 856  YTAVPISYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIP-RGDKFSSRHGQKGVTGLI 914

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
              QE+ PF   GI PD+++NPH FPSR T G+ LE   GK       G+  G   Y T F
Sbjct: 915  VEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKA------GLLEGKFHYGTAF 968

Query: 994  ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
                V+ I  +L R GF+  G +  Y G TG  + + I+ GP +YQ+L HM +DK+  R 
Sbjct: 969  GGSKVEDIQAELERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKHMVQDKMHARA 1028

Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
             GP   LTRQP   R R GG++ GEMERDCLI++GA+  + ERL   SD++++ +CR C 
Sbjct: 1029 RGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTC- 1087

Query: 1114 NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                        GR     +C  C S  ++ K ++PY  KLL QEL SM +  K   E
Sbjct: 1088 ------------GRMAYCSWCHFCQSSANVSKISMPYACKLLFQELTSMNVVPKMILE 1133


>gi|344303893|gb|EGW34142.1| DNA-directed RNA polymerase [Spathaspora passalidarum NRRL Y-27907]
          Length = 1155

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 378/1194 (31%), Positives = 581/1194 (48%), Gaps = 154/1194 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++S+N F+   L+K   +    +V    DP    E   +Y  +R G  
Sbjct: 47   AFLKVKGLVKQHLDSFNYFVDTDLKKIIKA--NELVLSDVDP----EFYLKYLDIRVGHR 100

Query: 92   TLDKPSFFAGNGGDEHDMFPRH-ARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
            +            D+  + P H  RL+++TYS+ + V V+   YT+          GR+ 
Sbjct: 101  S--------KTPNDKLVLMPPHQCRLRDLTYSAPIFVDVE---YTR----------GRKI 139

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG------DCDFDHGGYFIIKGAEKV 204
             +         T++ IGR+P+M++S+ C + G +        +C  D GGYFI+ G EKV
Sbjct: 140  IVH--------TDLEIGRMPIMLRSNKCILDGADDNTMARYDECPLDPGGYFIVNGTEKV 191

Query: 205  FVAQEQICLKRLWVS--NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKV-LSVYF 261
             + QEQ+   R+ V      G   A  + +   R        SK   I   +K+ L    
Sbjct: 192  ILVQEQLSKNRIIVEADEKKGIVQASVTSSTHER-------KSKTYVITKNDKIYLKHNS 244

Query: 262  LSTEIPIWILFFALGVSSDKEIVNLI---DFTCEDCSILNILFASIHDADNKCDEFRKGR 318
            +S +IPI I+  A G++SD EI+ L+   D   +D  ++N   A+      + + F + +
Sbjct: 245  ISEDIPIVIILKAAGITSDLEILQLVCGSDPNYQDLFVVNFEEAA------RLEVFTQ-Q 297

Query: 319  NALKYVDKLIKG---------TTFPPG-ESTEECMNTYLFPSLHGTKQKARFLGYMVKCL 368
             AL YV K +K          +    G E+    +  +L  S    K+KA ++  M + +
Sbjct: 298  QALNYVGKRVKTIRRAGAPKLSQLQEGIEAIATTIIAHLTVSDLQFKEKALYIATMARRV 357

Query: 369  LQAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDRT 424
            +         D+RD   NKRLELAG+L+    E   K   +  +  + K L++       
Sbjct: 358  IMTMHNPTMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNSDFKANIDKVLKKPSRTSEF 417

Query: 425  VRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQ 484
               +   + ++ +T GL+RA STG WS    + ER +G+   L R + +  L  + R   
Sbjct: 418  DALLSINIHSNNITMGLNRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALGMMTRISS 476

Query: 485  QVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFN 543
            Q + + KV   R   PS +G +C   TP+GE CGLVKNL +   ++T   E PI +  + 
Sbjct: 477  QFEKSRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEELPIKKLCYM 536

Query: 544  SGMEKL--ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
             G E +   D A+    G F + V+G  +G  +    FV   R+ RR  ++   + I  +
Sbjct: 537  LGCEPILGVDSATLHDEGNFGIHVNGTLVGTTRFPGKFVENFRKLRRTGKVSAFISIHTN 596

Query: 602  ELQSEVRIFMDAGRILRPLLVVENMGKIK-------SLEGKNYTFQALLDHGIIELVGTE 654
              Q  V I  D GRI RPL++VEN GK K        L+   + F   L HG++E +   
Sbjct: 597  THQQAVHIATDGGRICRPLIIVEN-GKSKVTAEHLLKLKKGEWAFDDFLVHGLVEYLDVN 655

Query: 655  EEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQ 714
            EE D   A     L ++  ++  +  TH E++   +LG   G+IP+ +H+ + R  YQ  
Sbjct: 656  EENDSLIA-----LYEENINENSVPTTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQC- 709

Query: 715  KHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNG 774
                QAIG    N   R+DTL + + YPQ+P+ +T   +           ++   +L  G
Sbjct: 710  AMGKQAIGAIAYNQFRRIDTLLYFMVYPQQPMVKTKTIE-----------LIDYDKLPAG 758

Query: 775  QNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKR--RSSDDM 832
            QNA VAV  + GY+ ED+LV+N+AS++RG  R + +R          +Q+KR    + D+
Sbjct: 759  QNATVAVMSYSGYDIEDALVLNKASIDRGFGRCQVVR-------KNTIQLKRYPNHTKDI 811

Query: 833  VNFGKIQ---SKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSI---------- 879
            ++  ++    + I    +L  DG   +GA +++G I   K+  + A  S           
Sbjct: 812  LSGMRVDEHGNPIFPHQALGPDGLGEVGARIENGQIYANKFVPTNAGESALGGASEPTNV 871

Query: 880  --------KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLG 931
                      K  E   V +V++S +D+ +    V LRQ R P LGDKFSS HGQKGV G
Sbjct: 872  ESHRETPAYYKGPEPSYVDQVMMSVSDNDQALIKVLLRQTRRPELGDKFSSRHGQKGVCG 931

Query: 932  FLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYAT 991
             +  QE+ PF   GI PDI++NPH FPSR T G+++E   GK       G+ +G   Y T
Sbjct: 932  IIVQQEDLPFNDMGISPDIIMNPHGFPSRMTVGKMIELISGKA------GVLNGTLEYGT 985

Query: 992  PFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKF 1051
             F    ++ +++ L   GFS  G + LY G TGE +++ IF GP +YQ+L HM  DK+  
Sbjct: 986  CFGGSKLEDMSKILVDKGFSYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHA 1045

Query: 1052 RNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRK 1111
            R  GP   LTRQP   R R GG++ GEMERDC+IA+GA+  L ERL   SD++++ IC K
Sbjct: 1046 RARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDICNK 1105

Query: 1112 CKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
            C             G      +C  C S ++I+K  +P  AKLL QEL SM I 
Sbjct: 1106 C-------------GLMGYNSWCTTCKSSENIIKMTIPCAAKLLFQELLSMNIA 1146


>gi|403213510|emb|CCK68012.1| hypothetical protein KNAG_0A03250 [Kazachstania naganishii CBS 8797]
          Length = 1155

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 368/1197 (30%), Positives = 584/1197 (48%), Gaps = 158/1197 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++S+N F+   L+K   +    ++    DP    E   +Y  +R G+ 
Sbjct: 59   AFLKVKGLVKQHLDSFNYFVDVDLKKIIKA--NELILSDVDP----EFYLKYVDIRIGK- 111

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
                    + +  ++H   P   RL++MTYS+ + V ++   YT+          GR   
Sbjct: 112  -------RSTSSANDHLTPPHECRLRDMTYSAPIYVDIE---YTR----------GRNII 151

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVF 205
            + K+V         IGR+P+M++S+ C +    +       +C  D GGYFI+ G EKV 
Sbjct: 152  MHKDVE--------IGRMPIMLRSNKCILSETNEREMARLNECPLDPGGYFIVNGTEKVI 203

Query: 206  VAQEQICLKRLWVS--NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKV-LSVYFL 262
            + QEQ+   R+ V      G   A  + +   R        SK   I   +K+ L    +
Sbjct: 204  LVQEQLSKNRIIVEADEKKGIVQASVTSSTHER-------KSKTYVITKNDKIYLKHNSI 256

Query: 263  STEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALK 322
            + EIPI I+  A G+ SD EI+ ++   C + S    +FA   +  +K + + + + AL+
Sbjct: 257  AEEIPIVIVLRACGIVSDLEIMQVV---CGNDSSYQDIFAVNFEEASKLNVYTQ-QQALE 312

Query: 323  YVDKLIKG------TTFPPG-ESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGR 375
            ++   +K       +T   G E+    +  +L       ++KA ++  M + ++ A    
Sbjct: 313  HIGTKVKTMRRQKLSTLQEGIEAIATTVVAHLTVEALDFREKALYMAMMARRVVMAMYNP 372

Query: 376  RKCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKRMAKALQRDLYGDRT 424
            +  D+RD   NKRLELAG+L+             + K  I    K+  +A++ D      
Sbjct: 373  KMVDDRDYVGNKRLELAGQLISLLFEDLFKKFNHDFKTSIDKVLKKPNRAMEYDAL---- 428

Query: 425  VRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQ 484
               +   + ++ +T+GL+RA STG WS    + ER +G+   L R + +  L  + R   
Sbjct: 429  ---LSINVHSNNITSGLNRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALGMMTRISS 484

Query: 485  QVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLVSTSILEPIFEQLFN 543
            Q + + KV   R   PS +G +C   TP+GE CGLVKNL + T + +    EPI +  + 
Sbjct: 485  QFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCYI 544

Query: 544  SGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDEL 603
             G+E +    S SL   + V+++G  +G+ +    FV + R  RR  ++   + I  +  
Sbjct: 545  LGVEDITVIDSASLHLNYGVYLNGTLVGITRFPNRFVHQFRSLRRTGKISEFISIYINSH 604

Query: 604  QSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGIIELVGTEEE 656
            Q  V I  D GRI RPL++V   GK       ++ L      F   L  G++E +   EE
Sbjct: 605  QHAVHIATDGGRICRPLIIV-TAGKSHVTADHLRKLLDGELVFDDFLKLGLVEYLDVNEE 663

Query: 657  EDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKH 716
             D   A       KD+E       TH E++   +LG   G+IP+ +H+ + R  YQ    
Sbjct: 664  NDSFIAL----YEKDLEPA----ITHMEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAM- 714

Query: 717  SSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQN 776
              QAIG    N   R+DTL + + YPQ+P+ ++   +           ++   +L  GQN
Sbjct: 715  GKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVKSKTIE-----------LINYDKLPAGQN 763

Query: 777  AIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRR---SSDDMV 833
            A VAV  + GY+ ED+LV+N++S++RG  R E  R        K   V +R    + D++
Sbjct: 764  ATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRR--------KTTTVLKRYPNHTQDII 815

Query: 834  NFGKIQSKIGRV---DSLDDDGFPFIGANLQSGDIVIGKYADSGA-------------DH 877
               ++     R+   ++L  DG   +G  L SG + I K   + +             + 
Sbjct: 816  GGMRVDENNERIWQHEALGPDGLGEVGMKLNSGQVYINKSVPTNSTEPFSGNTEAQYRET 875

Query: 878  SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQE 937
             +  +  E   + +V++S +D+ +    V LRQ R P LGDKFSS HGQKGV G +  QE
Sbjct: 876  PVIYRAPESSHIDQVMMSVSDNDQALIKVLLRQSRRPELGDKFSSRHGQKGVCGIIVQQE 935

Query: 938  NFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPS 997
            + PF+ QG+VPDI++NPH FPSR T G+++E   GK       G+ +G   Y T F    
Sbjct: 936  DMPFSDQGVVPDIIMNPHGFPSRMTVGKMIELVSGKA------GVLNGTLEYGTCFGGSK 989

Query: 998  VDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPV 1057
            ++ +++ L   GF+  G + LY G TGE +++ IF GP +YQ+L HM  DK+  R  GP 
Sbjct: 990  LEDMSKILVDQGFNYSGKDMLYSGVTGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPR 1049

Query: 1058 HPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVAN 1117
              LTRQP   R R GG++ GEMERDC+IA+GA+  L ERL   SD++++ +C KC     
Sbjct: 1050 AVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCNKC----- 1104

Query: 1118 VIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT--LKFDTEF 1172
                    G      +C  C S ++++K  +PY AKLL QEL SM I   L+ D  F
Sbjct: 1105 --------GLMGYSGWCTTCKSAENVIKMTIPYAAKLLFQELLSMNIAPRLRLDEIF 1153


>gi|302307227|ref|NP_983821.2| ADL275Cp [Ashbya gossypii ATCC 10895]
 gi|299788898|gb|AAS51645.2| ADL275Cp [Ashbya gossypii ATCC 10895]
 gi|374107033|gb|AEY95941.1| FADL275Cp [Ashbya gossypii FDAG1]
          Length = 1141

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 373/1192 (31%), Positives = 576/1192 (48%), Gaps = 153/1192 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++S+N F+   L+K   +    +V    DP    E   +Y  +R G+ 
Sbjct: 46   AFLKVKGLVKQHLDSFNYFVDVDLKKIIKA--NEMVLSDVDP----EFYLKYVDIRVGRR 99

Query: 92   TLDKPSFFAGNGGDEHDMFPRH-ARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
            +             + DM P H  RL++MTYS+ + V ++   YT+          GR  
Sbjct: 100  S----------NSSKIDMTPPHECRLRDMTYSAPIFVDIE---YTR----------GRSI 136

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKV 204
             + K+V         IG++P+M++S+ C + G  +       +C  D GGYFI+ G EKV
Sbjct: 137  VLHKDVE--------IGKMPIMLRSNKCILNGASEEVMAKLNECPLDPGGYFIVNGTEKV 188

Query: 205  FVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLS----VY 260
             + QEQ+   R+ V            E    + IV+    S   + K    V++    +Y
Sbjct: 189  ILVQEQLSKNRIIV------------EADEKKAIVQASVTSSTHERKSKTYVVTKNDKIY 236

Query: 261  F----LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRK 316
                 ++ E+PI I+  A G+ SD EI+ L+   C + S    +FA   +  +K + + +
Sbjct: 237  LKHNSIAEEVPIVIVLKACGIVSDLEIMQLV---CGNDSSYQDIFAINFEEASKMNIYTQ 293

Query: 317  GRNALKYVDKLIKG------TTFPPG-ESTEECMNTYLFPSLHGTKQKARFLGYMVKCLL 369
             + AL+Y+   +K       T    G E+    +  +L       ++KA ++  M + ++
Sbjct: 294  -QQALEYIGTKVKTIRRQKLTVLQEGIEAIATTVIAHLTVEALDFREKALYVAMMTRRVI 352

Query: 370  QAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDRTV 425
             A    +  D+RD   NKRLELAG+L+    E   K      +  + K L++    +   
Sbjct: 353  MAIHNPKMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNNDFKASIDKVLKKPNRAEMYD 412

Query: 426  RPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQ 485
              +   + ++ +T+GL+RA STG WS    + ER +G+   L R + +  L  + R   Q
Sbjct: 413  ALLSINVHSNNITSGLNRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALGMMTRISSQ 471

Query: 486  VQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLVSTSILEPIFEQLFNS 544
             + + KV   R   PS +G +C   TP+GE CGLVKNL + T + +    EPI    +  
Sbjct: 472  FEKSRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEEPIKNLCYLL 531

Query: 545  GMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQ 604
            G+E +    S S+   + V+++G  IG  +    FV++ R  RR  ++   + I  +  Q
Sbjct: 532  GVEDITLLDSASIHLNYGVYLNGTIIGTTRFPARFVNQFRLLRRTGKVSEFISIYTNSHQ 591

Query: 605  SEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEED 658
              V I  D GRI RPL++V N       G ++ L      F   L  G++E +   EE D
Sbjct: 592  KAVHIATDGGRICRPLIIVRNGKSMVTAGHLRRLLEGELQFDDFLKLGLVEYLDVNEEND 651

Query: 659  CCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSS 718
               A       KDIE+      TH E++   +LG   G+IP+ +H+ + R  YQ      
Sbjct: 652  SYIAL----YEKDIEEGT----THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQC-AMGK 702

Query: 719  QAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAI 778
            QAIG    N   R+DTL + + YPQ+P+ ++   +           ++   +L  GQNA 
Sbjct: 703  QAIGAIAYNQFKRIDTLLYLMIYPQQPMVKSKTIE-----------LIDYDKLPAGQNAT 751

Query: 779  VAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRR---SSDDMVNF 835
            VAV  + GY+ ED+LV+N++S++RG  R         E   K   + +R    + D++  
Sbjct: 752  VAVMSYSGYDIEDALVINKSSIDRGFGR--------CETRKKTTTILKRYPNHTQDIIGG 803

Query: 836  GKIQSK---IGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHS-------------I 879
             ++      I +  SL  DG   +G  + SG I I K   + A  S             I
Sbjct: 804  MRVDENGEPIWQHQSLGPDGLGEVGMKVTSGQIYINKSIPTNASDSVLNQVQSQYREAPI 863

Query: 880  KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENF 939
              +  E   + +V++S +D+ +    V LRQ R P LGDKFSS HGQKGV G +  QE+ 
Sbjct: 864  IYRAPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVQQEDM 923

Query: 940  PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVD 999
            PF  QGI PDI++NPH FPSR T G++LE   GK       G+ +G   Y T F    + 
Sbjct: 924  PFNDQGICPDIIMNPHGFPSRMTVGKMLELVSGKA------GVLNGTLEYGTCFGGSQLA 977

Query: 1000 AITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHP 1059
             ++E L   GF+  G + LY G TGE +++ +F GP +YQ+L HM  DK+  R  GP   
Sbjct: 978  DMSEILVNNGFNYSGKDMLYSGITGECLQAYVFFGPIYYQKLKHMVLDKMHARARGPRAV 1037

Query: 1060 LTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVI 1119
            LTRQP   R R GG++ GEMERDC+IA+GA+  L ERL   SD++++ +C KC       
Sbjct: 1038 LTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMLSSDAFEVDVCNKC------- 1090

Query: 1120 QRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                  G      +C  C S + I+K  +PY AKLL QEL SM I  +   E
Sbjct: 1091 ------GLMGYSGWCTSCKSAEHIIKMTIPYAAKLLFQELLSMNIAPRLKLE 1136


>gi|149238948|ref|XP_001525350.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Lodderomyces
            elongisporus NRRL YB-4239]
 gi|146450843|gb|EDK45099.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Lodderomyces
            elongisporus NRRL YB-4239]
          Length = 1157

 Score =  501 bits (1290), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 368/1192 (30%), Positives = 574/1192 (48%), Gaps = 147/1192 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++S+N F+   L+K   +   ++V    DP    +   +Y  +R G  
Sbjct: 46   AFLKIKGLVKQHLDSFNYFVDTDLKKILKA--NSLVLSDVDP----DFYVKYLDIRVGHK 99

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
            +   P      G  E  + P   RL+++TYS+ + V V+   YT+ R      K  R   
Sbjct: 100  STSAP------GTKEVILPPHECRLRDLTYSAPIYVDVE---YTRGR------KIIRHND 144

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVF 205
            ++            IGR+PVM++S+ C + G+++       +C  D GGYF++ G EKV 
Sbjct: 145  LE------------IGRMPVMLRSNKCMLDGLDERQMAQVDECPLDPGGYFVVNGTEKVI 192

Query: 206  VAQEQICLKRLWVS--NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLS 263
            + QEQ+   R+ V   +  G   A  + +   R          +   K G+  L    + 
Sbjct: 193  LVQEQLSKNRIIVEADDKKGIVQASVTSSTHER------KSKTYVITKNGKIYLKHNSIG 246

Query: 264  TEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKY 323
             ++PI I+  A G++SD EI+ L+   C        LF    +   + + F + + AL Y
Sbjct: 247  EDVPIVIVLKAAGITSDLEILQLV---CGSNPHYQDLFVVNFEEAARLEVFTQ-QQALLY 302

Query: 324  VDKLIKG---------TTFPPG-ESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYS 373
            + K +K          +    G E+    +  +L  S    K+KA ++  M + ++ A  
Sbjct: 303  LGKRVKTIRRAGAPKLSQLQEGIEAIATTIVAHLTVSNLQFKEKAFYMAMMARRVVMAMH 362

Query: 374  GRRKCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKRMAKALQRDLYGD 422
              +  D+RD   NKRLELAG+L+             + K +I    K+ ++  + D    
Sbjct: 363  NPKMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNSDFKANIDKILKKPSRTTEFDAL-- 420

Query: 423  RTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
                 +   + ++ +T GL+RA STG WS    + ER +G+   L R + +  L  + R 
Sbjct: 421  -----LSINIHSNNITMGLNRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALGMMTRI 474

Query: 483  RQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQL 541
              Q + + KV   R   PS +G +C   TP+GE CGLVKNL +   ++T   E PI +  
Sbjct: 475  SSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEELPIKKLC 534

Query: 542  FNSGMEKLA--DDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIK 599
               G E +   D ++  + G F VF++G  IG  +  + FV++ R  RR  ++   + I 
Sbjct: 535  IALGCESILGLDSSTLHVDGNFGVFLNGTLIGATRFPVKFVNDFRHLRRAGKVSAFISIY 594

Query: 600  RDELQSEVRIFMDAGRILRPLLVVE-NMGKIKS------LEGKNYTFQALLDHGIIELVG 652
             +     V +  D GRI RPL++VE N  K++S      L G+ + F   L  G++E + 
Sbjct: 595  TNTHHQAVHLATDGGRICRPLIIVEKNKSKVQSEHLKKLLRGE-WQFDDFLREGLVEYLD 653

Query: 653  TEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 712
              EE D   A       KDI        TH E++   +LG   G+IP+ +H+ + R  YQ
Sbjct: 654  VNEENDSLIAL----YEKDIGSNANATVTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQ 709

Query: 713  SQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELY 772
                  QAIG    N   R+DTL + + YPQ+P+ +T   +           ++   +L 
Sbjct: 710  CAM-GKQAIGAIAYNQFKRIDTLLYFMVYPQQPMVKTKTIE-----------LINYDKLP 757

Query: 773  NGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDM 832
             GQNA VAV  + GY+ ED+LV+N++SL+RG  R + +R    ++       K   S   
Sbjct: 758  AGQNATVAVMSYSGYDIEDALVLNKSSLDRGFGRCQVVRKNTVQLKKYPNHTKDILSGMR 817

Query: 833  VNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKY-------------------ADS 873
            V+  +    I    +L  DG   +G+ +++G +   K+                   A+S
Sbjct: 818  VD--ENNEPIFPHQALGPDGLGEVGSRIENGQVFANKFVPTNSGESTFAGGMQQQPQAES 875

Query: 874  GADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
              + +   K  E   V +V++S +D+ +    V LRQ R P LGDKFSS HGQKGV G +
Sbjct: 876  HREAAQYYKGPEPSYVDQVMMSVSDNDQALVKVLLRQTRRPELGDKFSSRHGQKGVCGII 935

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
               E+ PF   GI PDI++NPH FPSR T G+++E   GK       G+ +G   Y T F
Sbjct: 936  VQHEDLPFNDDGISPDIIMNPHGFPSRMTVGKMIELISGKA------GVLNGSLEYGTCF 989

Query: 994  ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
                ++ +++ L   GFS  G + LY G TGE +++ IF GP +YQ+L HM  DK+  R 
Sbjct: 990  GGSKLEDMSKILVSKGFSYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARA 1049

Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
             GP   LTRQP   R R GG++ GEMERDC+IA+GA+  L ERL   SD++++ +C KC 
Sbjct: 1050 RGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCNKC- 1108

Query: 1114 NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
                        G      +C  C   ++I+K  +PY AKLL QEL SM I 
Sbjct: 1109 ------------GLMGYNSWCTTCKGSENIIKMTIPYAAKLLFQELLSMNIA 1148


>gi|344247350|gb|EGW03454.1| DNA-directed RNA polymerase II subunit RPB2 [Cricetulus griseus]
          Length = 807

 Score =  501 bits (1290), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 317/842 (37%), Positives = 448/842 (53%), Gaps = 81/842 (9%)

Query: 364  MVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRD--LYG 421
            MV  LL A  GRR+ D+RD + NKRL+LAG LL        A   + M K L ++  +Y 
Sbjct: 1    MVHRLLLAALGRRELDDRDHYGNKRLDLAGPLL--------AFLFRGMFKNLLKEVRIYA 52

Query: 422  DRTVR-----PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTL 476
             + +       +E  +   I+++GL  + +TG W    K  +  +G+   L R     TL
Sbjct: 53   QKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTL 112

Query: 477  VDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILE 535
              LRR    +   GK+   R  H + WG +C   TP+G   GLVKNL +   +S  S   
Sbjct: 113  SHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPS 172

Query: 536  PIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL-PT 594
            PI E L    ME L + +  ++    K+FV+G W+G+ KD    ++ LR+ RR+ ++  +
Sbjct: 173  PILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVS 232

Query: 595  QVEIKRDELQSEVRIFMDAGRILRPLLVVE---------NMGKIKSLEGKNYTFQALLDH 645
            +V + RD  + E+RI+ DAGRI RPLL+VE         ++ ++K  E  NY++Q L+  
Sbjct: 233  EVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVAS 292

Query: 646  GIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPI---KFTHCELDMSFLLGLSCGIIPFAN 702
            G++E + T EEE    A        D+++K+      +THCE+  S +LG+   IIPF +
Sbjct: 293  GVVEYIDTLEEETVMLAM----TPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPD 348

Query: 703  HDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGH 762
            H+ + R  YQS     QA+G   TN  +R+DTL+H L+YPQ+PL  T   +         
Sbjct: 349  HNQSPRNTYQSAM-GKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSME--------- 398

Query: 763  NHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNK-- 820
               L   EL  G N+IVA+  + GYNQEDS++MNR++++RG FRS   RSYK +   K  
Sbjct: 399  --YLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGF 456

Query: 821  -EMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD------- 872
             + +V  + + +         +    D LDDDG    G  +   D++IGK          
Sbjct: 457  DQEEVFEKPTRETCQ----GMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDE 512

Query: 873  --------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMH 924
                    +  D S  L+ +E G+V +V+++ N +G  F  + +R VR P +GDKF+S H
Sbjct: 513  LESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRH 572

Query: 925  GQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICS 984
            GQKG  G    QE+ PFT +GI PDI+INPHA PSR T G L+E   GK   +  KG   
Sbjct: 573  GQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGEIG 630

Query: 985  GLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIH 1043
                 ATPF    +V  I+  L   G+   G E LY+G TG  + S IFIGPT+YQRL H
Sbjct: 631  D----ATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKH 686

Query: 1044 MSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDS 1103
            M +DK+  R  GP+  L RQP+  R R GG++FGEMERDC IAHGAA  L ERLF  SD 
Sbjct: 687  MVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDP 746

Query: 1104 YQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMG 1163
            YQ+H+C  C  +A           +     CR C +   I    +PY  KLL QEL SM 
Sbjct: 747  YQVHVCNLCGIMAI-------ANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMS 799

Query: 1164 IT 1165
            I 
Sbjct: 800  IA 801


>gi|452820803|gb|EME27841.1| DNA-directed RNA polymerase subunit [Galdieria sulphuraria]
          Length = 1158

 Score =  500 bits (1288), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 377/1201 (31%), Positives = 568/1201 (47%), Gaps = 159/1201 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I S+N  I+  L K   +  +   +   D S       RY  +R G  
Sbjct: 51   AFLKLRGLVKQHIESFNFLIEKELSKIVAANDKVTCDA--DQSFY----LRYLGIRVGTP 104

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
            ++++    +        + P+  RL+++TY++ + V V             ++  G+E  
Sbjct: 105  SIEEDLVIS-------KVTPQECRLRDLTYAAPIYVDV-------------RYTRGKEVL 144

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
            I+K+V         IGRIP+M++S  C + G         G+C  D GGYFII+G E+V 
Sbjct: 145  IRKDV--------AIGRIPIMLRSSHCILTGKKDGQLASLGECPLDPGGYFIIRGTERVI 196

Query: 206  VAQEQICLKRLWVSN----SMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYF 261
            + QEQ+   R+ +      +   TV   +  +++R    LV        K     L    
Sbjct: 197  LIQEQLSKNRIIIEEDKKGNYCATVTSSTHERKSR--TSLV-------YKSNNIYLRHNS 247

Query: 262  LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNAL 321
            L  +IPIWI+F AL V SD+EIV LI    E+    +  F   H  +      +    AL
Sbjct: 248  LVDDIPIWIVFKALEVESDQEIVQLIGLIEEEYR--SYYFLLNHKKECISRHVQNRNEAL 305

Query: 322  KYVDKLI----KGTTFPPG--ESTEECMNTYLFPSL----HGTKQKARFLGYMVKCLLQA 371
            +Y+   +    KG +F     E  +E +   +   +    H  + K+ +L +MV+ LL  
Sbjct: 306  EYIGSRVRLFRKGYSFRRSTIEEAQEVLAGVILSHIPTYQHNFRNKSIYLAFMVRRLLTV 365

Query: 372  YSGRRKCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKRMAKALQRDLY 420
                   D++D + NKRLELAG+LL             +LK H      +  +A Q D+ 
Sbjct: 366  AENLTTVDDKDYYGNKRLELAGQLLSLLFEDLFKKFNADLKRHADMVLSKPNRAAQFDIV 425

Query: 421  GDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLR 480
              + +RP         ++ GL  A  TG W+    R  R +GI   L R + +  L  + 
Sbjct: 426  --KCMRP-------DTISVGLENAIGTGNWTVKRFRMHR-AGITQVLSRLSYIAALGMMT 475

Query: 481  RTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-LEPIFE 539
            R   Q + T K+   R    S WG +C   TP+GE+CGLVKNL +T  ++T    EP+  
Sbjct: 476  RITSQFEKTRKISGPRSLQGSQWGLLCPSDTPEGESCGLVKNLALTAHITTDAEEEPLIR 535

Query: 540  QLFNSGMEKLADDASYSLGGK------FKVFVDGDWIGVCKDSLSFVSELRRKRRRKELP 593
              +  G+E    DA+   G +      F++F++G ++G+ +++  F +  R  RR+  + 
Sbjct: 536  LCYILGVE----DATLFSGDELNNPSHFRIFLNGKFLGIHRNASYFANIFRFLRRKGAIG 591

Query: 594  TQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHG 646
              V I  +E ++ V +  D+GRI RPL++VEN GK       I+ LE     F  L+  G
Sbjct: 592  EFVSIFVNEAENVVYLSCDSGRICRPLIIVEN-GKPKVTQQYIEQLERNQLEFTDLVQQG 650

Query: 647  IIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHA 706
            ++E +   EE +   A          E+ +P   TH E+    +LG+  G+IP+ +H+ +
Sbjct: 651  LVEYLDVNEENNALIALS-------EENIEPCSTTHLEISPLAILGVCAGVIPYPHHNQS 703

Query: 707  RRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHIL 766
             R  YQ      QAIGF   N  +R DTL + L Y Q+PL  T                +
Sbjct: 704  PRNTYQC-AMGKQAIGFIGYNQHLRTDTLLYLLTYAQKPLVNTKTIS-----------FI 751

Query: 767  PRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKR 826
               EL  GQNAIVAV  + GY+ ED+L++NR+SL+RG  R   +R +   +         
Sbjct: 752  KYDELPGGQNAIVAVMSYSGYDIEDALILNRSSLDRGYGRCCVVRKHAFGLRRYPNGTCD 811

Query: 827  RSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGK------YADSGADHSIK 880
            R           +    +   L++DG P +G  L  G   + K           +  SI+
Sbjct: 812  RVCRPPSFSESSERTHMKFACLEEDGLPKVGGRLSPGQAYVYKETPMDTMTTMTSQQSIQ 871

Query: 881  ----------LKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVL 930
                       K  +  ++ +VV++SN        V +R+ R+P +GDKFSS HGQKGV 
Sbjct: 872  QVGYRPQPFFYKGPDDAVIDRVVVTSNASTHALIKVMIRETRTPEVGDKFSSRHGQKGVC 931

Query: 931  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYA 990
            G +  QE+ PF  QGI PDI++NPH FPSR T G+LLE   GK       G+ SG  +  
Sbjct: 932  GLIVPQEDMPFNEQGICPDIIMNPHGFPSRMTVGKLLELMAGKA------GVLSGEFKNG 985

Query: 991  TPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVK 1050
            T F    ++     L + GFS  G + LY G TGE +++ +F+GP +YQ+L HM +DK+ 
Sbjct: 986  TAFDGDPLEDCASLLVQHGFSYTGKDFLYSGMTGEPLQAYVFMGPIYYQKLKHMVKDKMH 1045

Query: 1051 FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICR 1110
             R  GP   LTRQP   R R GG++ GEMERDCLI +GA+  + ERL   SD++  H+CR
Sbjct: 1046 ARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLIMERLMHSSDAFTAHVCR 1105

Query: 1111 KCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
            +C             G  V   +C  C +   I    +PY  KLL QEL SM I  K   
Sbjct: 1106 QC-------------GLIVSKDWCPTCGNSLQIRPLKIPYACKLLFQELQSMNIWPKILL 1152

Query: 1171 E 1171
            E
Sbjct: 1153 E 1153


>gi|429851912|gb|ELA27071.1| DNA-directed RNA polymerase iii 130 kda polypeptide [Colletotrichum
            gloeosporioides Nara gc5]
          Length = 1451

 Score =  500 bits (1288), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 390/1206 (32%), Positives = 585/1206 (48%), Gaps = 158/1206 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN F++N +++   +    I+    + S      W    + F  +
Sbjct: 35   AFLKVKGLVKQHIDSYNFFVENEIKEIVRA--NRIIRSDVNSSF-----W----LEFTDI 83

Query: 92   TLDKPSFFAGNG-GDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
             ++KPS    N    ++++ P   RL++MTY++ + V + +          DK K  R+ 
Sbjct: 84   RVEKPSRVDFNDIRAQNEVTPMECRLRDMTYAAPIMVDIAY--------IRDKSKIVRK- 134

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGAEKV 204
                        N+ +GR+PVM+KS +C + G    +      C  D GGYFII G EKV
Sbjct: 135  ------------NVPLGRLPVMLKSSICRLGGATNAEMSRMNECPLDPGGYFIINGTEKV 182

Query: 205  FVAQEQICLKRLWV-----SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
             + QEQ+   R+ V     +N +  +V   +  ++++  V L         K    +L+ 
Sbjct: 183  ILIQEQLSKNRVIVEADEKNNVITASVTSSTHERKSKTYVTL---------KKDRILLTA 233

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
              L   IPI I+  ALG  SD EI+ L+     D       F    +   K   + + + 
Sbjct: 234  NILVEGIPIVIILKALGGLSDYEIMQLV---AGDNGKYQDEFLVQFEEATKVGVYTQ-QQ 289

Query: 320  ALKYVDKLIK-GTTFPPGES------TEECMNTYL-----FPSLHGTK--QKARFLGYMV 365
            AL+Y+   +K G +  P  +       EE ++           + G     KA ++ +M 
Sbjct: 290  ALEYIGARVKMGKSRVPFSAQVRRNHVEEALDALANLIIAHVPIEGLDFYPKAVYVAFMT 349

Query: 366  KCLLQAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYG 421
            + +L A S     D+RD   NKRLELAG+LL    E   K    + +  + K L++D   
Sbjct: 350  RRVLMAQSNLSLVDDRDFVGNKRLELAGQLLSLLFEDLFKQFCGNVKSSIDKVLKKD--- 406

Query: 422  DRTVRPIEYYL----DASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLV 477
            +R V P++        A+++  G++RA  TG W+       R +G+   L R + +  L 
Sbjct: 407  NRAV-PLDAVNMISNHANMIGQGINRAIQTGNWTVKRFNMNR-AGVTHVLSRLSYISALG 464

Query: 478  DLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-P 536
             + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T++ E P
Sbjct: 465  MMTRISSQFEKTRKVSGPRALQPSQWGMLCTSDTPEGEACGLVKNLALMTHITTNVEEEP 524

Query: 537  IFEQLF--NSGMEKLADDASYSLG--GKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL 592
            +   +F  ++G+E + + +   +   G F + ++G    + +    F  + R  RRR  +
Sbjct: 525  VKRWVFTLDAGVEPIRNFSGGEMHREGSFVIHINGTPFALTRYPKRFAGKFRTMRRRGWI 584

Query: 593  PTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDH 645
               V I  +   + V I  D GRI RP ++V+N GK       +K L+    TF   L H
Sbjct: 585  SPFVSIHINNHFNAVHIATDEGRICRPYIIVKN-GKPKLKAEHLKLLQLGKATFDDFLTH 643

Query: 646  GIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDH 705
            GI+E +   EE D   A          E    +  TH E++   +LG   G+IPF +H+ 
Sbjct: 644  GIVEYLDVNEENDTLVAL--------YETDVTMTTTHMEIEPFTVLGAVAGLIPFPHHNQ 695

Query: 706  ARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHI 765
            + R  YQ      QAIG    N   R+DTL + L YPQRP+   +IS  +    Y     
Sbjct: 696  SPRNTYQC-AMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPM---VISKTIQLVNYD---- 747

Query: 766  LPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVK 825
                +L  GQNA V V  + GY+ ED+LV+N+AS +RG  R +  R Y AE+  K    +
Sbjct: 748  ----KLPAGQNATVIVMSYSGYDIEDALVLNKASCDRGFGRCQVFRKYTAEL-QKYPNGR 802

Query: 826  RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA--DSGA-------- 875
            R    D VN    ++K  + ++LDDDG   +G  + SG+ +I K    D+G+        
Sbjct: 803  RERIGDPVNDENGRTK--KHEALDDDGLAIVGYKINSGETMIKKETPLDTGSTGIGMDRG 860

Query: 876  -----DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVL 930
                 D SI  +  +   + KV++S  +       V  RQ R P LGDKFSS HGQKGV+
Sbjct: 861  PSEFRDSSISYRIADPAYIDKVMVSHTERETMVVKVQTRQTRRPELGDKFSSRHGQKGVV 920

Query: 931  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYA 990
            G +  QE+ PF+  G+VPDI++NPH FPSR T G+LLE   GK        +  G K Y 
Sbjct: 921  GIIVDQEDLPFSDTGLVPDIIMNPHGFPSRMTVGKLLECLTGKA------SVLDGRKDYG 974

Query: 991  --TPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDK 1048
                F +  ++ ++  L   GFS  G +    G TGE + + IF GP +YQRL HM +DK
Sbjct: 975  FGDAFRSHPLEQMSAALVDHGFSWEGKDYFTSGITGEPLEAYIFNGPIYYQRLKHMVQDK 1034

Query: 1049 VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHI 1108
            +  R+ GP   LTRQP   R R GG++ GEMERDCLIA+GA+  L ERL   SD  Q+ I
Sbjct: 1035 MHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMISSDGTQLDI 1094

Query: 1109 CRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSM--GITL 1166
            C++C            G    +G YC  C S  ++ +  +PY AKLL QEL SM  G+ L
Sbjct: 1095 CQQC------------GLFGYKG-YCHTCKSTREVTQMTMPYAAKLLVQELISMNVGVRL 1141

Query: 1167 KFDTEF 1172
            +   EF
Sbjct: 1142 QLADEF 1147


>gi|50310217|ref|XP_455128.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644264|emb|CAG97835.1| KLLA0F01078p [Kluyveromyces lactis]
          Length = 1142

 Score =  500 bits (1287), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 370/1186 (31%), Positives = 577/1186 (48%), Gaps = 153/1186 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++S+N F+   L+K   +    ++    DP    E   +Y  +R G  
Sbjct: 47   AFLKVKGLVKQHLDSFNYFVDVDLKKIIKA--NEVILSDVDP----EFYLKYIDIRVG-- 98

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
                   +  NG       P   RL++MTYS+ + V ++   YT+          GR   
Sbjct: 99   -------YKHNGNKAIMTPPHECRLRDMTYSTPIFVDIE---YTR----------GRSIV 138

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGAEKVF 205
            + ++V         IGR+P+M++S+ C + G  + D      C  D GGYFI+ G EKV 
Sbjct: 139  LHRDVE--------IGRMPIMLRSNKCILDGAAENDMAKLNECPLDPGGYFIVNGTEKVI 190

Query: 206  VAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLS----VYF 261
            + QEQ+   R+ V          +++ K+N  IV+    S   + K    V++    +Y 
Sbjct: 191  LVQEQLSKNRIIV----------EADEKKN--IVQASVTSSTHERKSKTYVVTKNDKIYL 238

Query: 262  ----LSTEIPIWILFFALGVSSDKEIVNLIDFTC-EDCSILNILFASIHDADNKCDEFRK 316
                ++ E+PI ++  A GV SD EI+ L+   C  D S  +I   ++ +A     +   
Sbjct: 239  KHNSIAEEVPIVVVLKACGVVSDLEIMQLV---CGNDSSYQDIFAVNLEEAAEL--KIYT 293

Query: 317  GRNALKYVDKLIKG------TTFPPG-ESTEECMNTYLFPSLHGTKQKARFLGYMVKCLL 369
             + AL+++   +K       +    G E+    +  +L       ++KA ++  M + ++
Sbjct: 294  QQQALEFIGTKVKTVRRQKLSILQEGIEAIATTVIAHLTVEALDFREKALYIAMMTRRVV 353

Query: 370  QAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDRTV 425
             A    +  D+RD   NKRLELAG+L+    E   K      +  + K L++    +   
Sbjct: 354  MAIDNPKMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNNDFKANIDKVLKKPNRAEMYD 413

Query: 426  RPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQ 485
              +   + ++ +T G++RA STG WS    + ER +G+   L R + +  L  + R   Q
Sbjct: 414  ALLTINVHSNNITTGMNRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALGMMTRISSQ 472

Query: 486  VQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLVSTSILEPIFEQLFNS 544
             + + KV   R   PS +G +C   TP+GE CGLVKNL + T + +    EPI    +  
Sbjct: 473  FEKSRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEEPIKRICYLL 532

Query: 545  GMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQ 604
            G+E ++   S S+   + V+++G  IG  +    FVS+ R  RR       + I  +  Q
Sbjct: 533  GVEDISLIDSASIHLNYGVYLNGTIIGTTRFPTKFVSQFRCLRRTGRASEFISIYTNTHQ 592

Query: 605  SEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEED 658
              V I  D GRI RPL++V N         ++SL      F   L  G++E +   EE D
Sbjct: 593  KAVHIATDGGRICRPLIIVSNGQSSVTADHLRSLLAGKLQFDDFLKLGLVEYLDVNEEND 652

Query: 659  CCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSS 718
               A   K L ++I        TH E++   +LG   G+IP+ +H+ + R  YQ      
Sbjct: 653  SFIALYEKDLSENI--------THLEIESFTVLGAVAGLIPYPHHNQSPRNTYQC-AMGK 703

Query: 719  QAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAI 778
            QAIG    N   R+DTL + + YPQ+P+ +T   +           ++   +L  GQNA 
Sbjct: 704  QAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIE-----------LIDYDKLPAGQNAT 752

Query: 779  VAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRR---SSDDMVNF 835
            VAV  + GY+ ED+LV+N+AS++RG  R E  R        K   V +R    + D++  
Sbjct: 753  VAVMSYSGYDIEDALVLNKASIDRGFGRCETRR--------KNTTVLKRYPNHTQDIIGG 804

Query: 836  GKIQSK---IGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSI------KLKHT-- 884
             ++      I +  +L  DG   +G  ++SG I + K   + A  SI      + K T  
Sbjct: 805  MRVDENGEPIWQHQALGPDGLGEVGMKVESGQIYVNKSVPTNASDSILTQTQAQYKETPV 864

Query: 885  -----ERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENF 939
                 E   + +V++S +D+ +    V LRQ R P LGDKFSS HGQKGV G +  QE+ 
Sbjct: 865  VYRAPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDL 924

Query: 940  PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVD 999
            PF  QG+VPDI++NPH FPSR T G+++E   GK       G+ +G   Y T F    ++
Sbjct: 925  PFNDQGVVPDIIMNPHGFPSRMTVGKMIELISGKA------GVLNGTLEYGTCFGGSKLE 978

Query: 1000 AITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHP 1059
             +++ L   GF+  G + LY G TGE +++ IF GP +YQ+L HM  DK+  R  GP   
Sbjct: 979  DMSKILVDNGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRAV 1038

Query: 1060 LTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVI 1119
            LTRQP   R R GG++ GEMERDC+IA+GA+  L ERL   SD++++ +C KC       
Sbjct: 1039 LTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMLSSDAFEVDVCEKC------- 1091

Query: 1120 QRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
                  G      +C  C + + +VK  +PY AKLL QEL +M I 
Sbjct: 1092 ------GLMGYSGWCTSCKTAEHVVKMTIPYAAKLLFQELLAMNIA 1131


>gi|70794986|gb|AAZ08467.1| RNA polymerase II second largest subunit [Linanthus californicus]
          Length = 733

 Score =  499 bits (1286), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 302/740 (40%), Positives = 412/740 (55%), Gaps = 67/740 (9%)

Query: 467  LGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVT 526
            L R     TL  LRR    +   GK+   R  H S WG +C   TP+G+ CGLVKNL + 
Sbjct: 15   LNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALM 74

Query: 527  GLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRR 585
              ++  S   PI E L   G E   + +   +    K+FV+G W+G+ +D    V  LRR
Sbjct: 75   VYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPDMLVKTLRR 134

Query: 586  KRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMG------KIKSLEGKNYT- 638
             RRR ++ T+V + RD    E+RI+ D GR  RPL +VEN         I++L+ +    
Sbjct: 135  LRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVENQRLLIKKRDIQALQQRESPE 194

Query: 639  ---FQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPI---KFTHCELDMSFLLG 692
               +  L+  G IE + TEEEE    +  I  L+    +KK      +THCE+  S +LG
Sbjct: 195  DGGWHDLVSKGYIEYIDTEEEETTMISMTINDLVSARANKKEAYSDTYTHCEIHPSLILG 254

Query: 693  LSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMIS 752
            +   IIPF +H+ + R  YQS     QA+G   TN   R+DTL++ L+YPQ+PL  T   
Sbjct: 255  VCASIIPFPDHNQSPRNTYQSAM-GKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 313

Query: 753  DCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRS 812
            +        H H     EL  G NAIVA+  + GYNQEDS++MN++S++RG FRS   RS
Sbjct: 314  E--------HLHFR---ELPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 362

Query: 813  YKAEVDNKEMQVKRRSSDDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDIV 866
            Y+ E       VK        +FG+      +  + G  D LDDDG    G  +   D++
Sbjct: 363  YRDEEKKMGTLVKE-------DFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVI 415

Query: 867  IGKY-------ADSGA--------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQV 911
            IGK        A  G         DHS  L+H+E G+V +V+L++N DG  F  V +R V
Sbjct: 416  IGKTTPIAPDEATQGGPAARYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSV 475

Query: 912  RSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAAL 971
            R P +GDKFSS HGQKG +G   +QE+ P+TI+GI PDI++NPHA PSR T GQL+E  +
Sbjct: 476  RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGICPDIIVNPHAIPSRMTIGQLIECIM 535

Query: 972  GKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLI 1031
            GK  A +GK      +  ATPF   +VD I++ LH+ G+   G E +Y+G TG  + + I
Sbjct: 536  GKVAAXMGK------EGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGHTGRRLPAXI 589

Query: 1032 FIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAA 1091
            F+GPT+YQRL HM +DK+  R  GPV  LTRQP   R R GG++FGEMERDC+IAHGAA 
Sbjct: 590  FLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAH 649

Query: 1092 NLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYG 1151
             L ERLF  SD+Y++H+C +C  VA           K     CR C +  DIV+ ++PY 
Sbjct: 650  FLKERLFDQSDAYRVHVCERCGLVAI-------ANLKKNSFECRGCKNKTDIVQVHIPYA 702

Query: 1152 AKLLCQELFSMGITLKFDTE 1171
             KLL QEL SM I  +  T+
Sbjct: 703  CKLLFQELMSMAIAPRMMTK 722


>gi|67515346|gb|AAY68202.1| RNA polymerase IV second largest subunit [Lycopodium sp. JL-2005]
          Length = 510

 Score =  499 bits (1285), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 258/531 (48%), Positives = 359/531 (67%), Gaps = 38/531 (7%)

Query: 569  WIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE---- 624
            W G  ++  + V  LR+ RR   +  +VEI RD +  EV+I+ D+GRILRPLL V+    
Sbjct: 3    WKGWHQNPETLVETLRKLRRCGHISXEVEIARDPIYKEVKIYTDSGRILRPLLXVDKQHL 62

Query: 625  -----NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKK-PI 678
                 ++ K K+L+ ++  F+ LL  G++EL+G +EEE+   A  ++ L  ++ +K+  +
Sbjct: 63   LITKKHIAKAKALKSES-AFKFLLQEGVVELLGVDEEEEALVALNVEXL--EVSNKRHSV 119

Query: 679  KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQ 738
             +THCEL  SF+LGL   +IPF NH+ + RV+ Q+QKH   AIGF  +N   R DT SH 
Sbjct: 120  HYTHCELHPSFILGLGASVIPFPNHNQSSRVMQQAQKHGKXAIGFYCSNFKSRSDTSSHL 179

Query: 739  LFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRA 798
            L+YPQ+ L RT  S            +L RPE  NGQNAIVA+  + GYNQEDS++MN++
Sbjct: 180  LYYPQKQLVRTRASA-----------LLERPEFTNGQNAIVAIACYSGYNQEDSIIMNQS 228

Query: 799  SLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGA 858
            S+ERG++R+ H  ++  ++     +  R+ S   V   + Q   G  D LD++GFP+IGA
Sbjct: 229  SIERGLYRTMHYHTFHFDIPANVDEEFRKPSASDVGGTRYQ---GSNDKLDNEGFPYIGA 285

Query: 859  NLQSGDIVIGKYADSG-----ADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRS 913
             L S DIV GK          +D S++LKHTE G V +VVLS ++DGK  + V LR+ R 
Sbjct: 286  ALSSPDIVAGKVTSVPNSSRLSDRSVRLKHTEMGRVDRVVLSMDEDGKKHARVRLRESRM 345

Query: 914  PCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGK 973
            P +GDKFSSMHGQKG+LG + +QE+ PFT +GIVPDI+INPHAFPSRQT GQ+LE+ LGK
Sbjct: 346  PQVGDKFSSMHGQKGILGMVFNQEDLPFTQEGIVPDIIINPHAFPSRQTLGQMLESVLGK 405

Query: 974  GIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFI 1033
             +A    G C   +  ATP ++ SV+++T+ LHR+G+ +WG E + +GRTG M+++ IF+
Sbjct: 406  AVA---NGCC---QNDATPSSSISVESLTDLLHRSGYERWGKECMCNGRTGHMLKARIFM 459

Query: 1034 GPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL 1084
            GPTFYQRLIHM++DK+K+R TGPVHPL+RQPVADRKR GG+KFGEMERDCL
Sbjct: 460  GPTFYQRLIHMAQDKLKWRRTGPVHPLSRQPVADRKRHGGVKFGEMERDCL 510


>gi|242092386|ref|XP_002436683.1| hypothetical protein SORBIDRAFT_10g006995 [Sorghum bicolor]
 gi|241914906|gb|EER88050.1| hypothetical protein SORBIDRAFT_10g006995 [Sorghum bicolor]
          Length = 1137

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 378/1190 (31%), Positives = 575/1190 (48%), Gaps = 135/1190 (11%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+S+N FI  G++K  ++     +E   DPS       RY  +R G  
Sbjct: 25   AFLKVRGLVKEHIDSFNYFIDKGIKKIVEANNR--IEARNDPSIY----LRYLDVRVGM- 77

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
                PS +     +   + P   RL + TYS+ ++V +Q+ V             G++  
Sbjct: 78   ----PSIY--ENCNVESITPHLCRLTDRTYSAPIEVDIQYTV-------------GKQHV 118

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVF 205
            +++          IIG +P+M++S  C +  +++      G+C  D GGYF++KG EKV 
Sbjct: 119  VKRR------NKFIIGYMPIMLRSSACILNEMDEDELAKYGECPLDPGGYFVVKGTEKVI 172

Query: 206  VAQEQICLKRLWV-SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLST 264
            + QEQ+   R+ V ++S G  +A  + +        +V M K      G+  L +   + 
Sbjct: 173  LIQEQLSKNRIIVDTDSKGRVIASVTSSTHAIKSKTVVLMDK------GKIYLQLNQFTK 226

Query: 265  EIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYV 324
             IPI ++  A+G+ SD+E V ++     D    ++LF SI +  +  +     + AL+Y+
Sbjct: 227  PIPIIVVMKAMGMESDQEAVQMVG---RDPRYGDLLFPSIQECAS--ERIYTRQQALQYM 281

Query: 325  DKLIK---GTTFPPGESTEECMNTYL--FPSLHGT-KQKARFLGYMVKCLLQAYSGRRKC 378
            D+ +     T    G S     + ++   P   G  + K  +   M++ +L A       
Sbjct: 282  DEKVMYPGATNNKEGRSNSILHDVFIAHVPVKDGNLRPKCIYTAVMLRRMLDAILNSDTF 341

Query: 379  DNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDRT-VRPIEY--Y 431
            D++D   NKR EL+G+L+    E   K   + A +RM K        D+T   P+++   
Sbjct: 342  DDKDYVGNKRFELSGQLISLLFEDLFKTMNSQAVERMNKN------SDKTRSSPLDFSQL 395

Query: 432  LDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGK 491
            +    +T GL RA STG W     R  R  G+   L R + + TL  + R   Q + T K
Sbjct: 396  IMQDTITFGLERAISTGNWDIKRFRMHR-KGVSQVLSRLSYMATLGYMTRITPQFEKTRK 454

Query: 492  VGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKLA 550
                R   PS WG +C   TP+GE CGL KNL +   ++T   E P+ +   + G+E L 
Sbjct: 455  TSGPRALQPSQWGMLCPCDTPEGEACGLTKNLALLSHITTDQEEGPLIDLCHSLGVEDLL 514

Query: 551  DDASYSL--GGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVR 608
              +S  +   G F V ++G  +G  KD    V  LR  RR   +   V I  +E Q  V 
Sbjct: 515  FLSSEEIHAPGSFLVMLNGLILGKHKDPQRLVIHLRNLRRSNVIGEFVSIFINEKQRCVH 574

Query: 609  IFMDAGRILRPLLVVENMG-------KIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCT 661
            I  D GR+ RPL ++ +MG        +  L    Y F   L  G+IE +   EE +   
Sbjct: 575  IASDGGRVCRPL-IIADMGISRIDETHMTKLRDGTYDFDDFLSGGLIEYLDVNEENNALI 633

Query: 662  AWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAI 721
            A    Y   D +D +    TH E++   +LG+  G+IP+ +H+ + R  YQ      QA+
Sbjct: 634  AL---YEHMDQDDVERSSITHIEIEPLSILGVVSGLIPYPHHNQSPRNTYQCAM-GKQAM 689

Query: 722  GFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAV 781
            G    N   R D+L + L Y QRPL  T   + +G    G            GQNA VAV
Sbjct: 690  GNIAYNQLFRADSLLYLLVYAQRPLLTTKTIELVGYDKLG-----------AGQNATVAV 738

Query: 782  NVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSK 841
              + GY+ ED++VMN++SL+RG  R   ++ Y    DN    V  R      +   +  K
Sbjct: 739  MGYSGYDIEDAIVMNKSSLDRGFGRCIALKKYTVLKDNYVDGVSDRIVKPQRDKDGVLMK 798

Query: 842  IGRVDSLDDDGFPFIGANLQSGDIVIGK------------------YADSGADHSIKLKH 883
               + +LDDDG    G  +++ DI + K                  Y DS A +  K   
Sbjct: 799  -QNMRALDDDGIVAPGQIIRNHDIYVNKQTPMNTSKGIGRPLTDSCYKDSPAIY--KGVD 855

Query: 884  TERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTI 943
             E  +V +V+L S+ + K      +R  R P +GDKFSS HGQKGV G +  QE+FPF+ 
Sbjct: 856  GETTVVDRVMLCSDTNDKLSIKCIIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSE 915

Query: 944  QGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDA--- 1000
            +GI PD+++NPH FPSR T G+++E   GK       G+  G   Y + F  PS +A   
Sbjct: 916  RGICPDLIMNPHGFPSRMTIGKMIELLGGKA------GVSCGRFHYGSAFGEPSGNADNV 969

Query: 1001 --ITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVH 1058
              I+  L + GFS  G + LY G  G+ + + IF+GP +YQ+L HM  DK+  R +GP  
Sbjct: 970  ADISSTLIKHGFSYNGKDFLYSGILGQPLEAYIFMGPIYYQKLKHMVLDKMHARASGPRV 1029

Query: 1059 PLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANV 1118
             LTRQP   R R GG++ GEMERDCLIA+GA+  + ERL   SD YQ+ +CRKC  +   
Sbjct: 1030 LLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFERLMLSSDPYQVQVCRKCGLLGYY 1089

Query: 1119 IQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
                     K++  YC +C +G+++ K  +PY  KLL QEL +M +  + 
Sbjct: 1090 -------NHKLKTSYCSMCKNGENMAKMRLPYACKLLFQELHAMNVVPRL 1132


>gi|255713708|ref|XP_002553136.1| KLTH0D09812p [Lachancea thermotolerans]
 gi|238934516|emb|CAR22698.1| KLTH0D09812p [Lachancea thermotolerans CBS 6340]
          Length = 1144

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 368/1199 (30%), Positives = 582/1199 (48%), Gaps = 166/1199 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++S+N F+   L+K   +    ++    DP    E   +Y  +R G  
Sbjct: 48   AFLKVKGLVKQHLDSFNYFVDVDLKKIIKA--NQLILSDVDP----EFYLKYVDIRVGH- 100

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
                    + +   ++ + P   RL++MTYS+ + V ++   YT+          GR   
Sbjct: 101  -------RSTSSSKDYIVPPHECRLRDMTYSAPVYVDIE---YTR----------GRNII 140

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGAEKVF 205
            + ++V         IGR+P+M++S+ C + G  + D      C  D GGYFI+ G EKV 
Sbjct: 141  MHRDVE--------IGRMPIMLRSNKCILNGASEKDMAKINECPLDPGGYFIVNGTEKVI 192

Query: 206  VAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLS----VYF 261
            + QEQ+   R+ V            E    + IV+    S   + K    V++    +Y 
Sbjct: 193  LVQEQLSKNRIIV------------EADEKKAIVQASVTSSTHERKSKTYVITKNDKIYL 240

Query: 262  ----LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG 317
                ++ E+PI ++  A G+ SD EI+ L+   C + S    +FA   +   K   + + 
Sbjct: 241  KHNSIAEEVPIVLVLKACGIVSDLEIMQLV---CGNDSSYQDIFAVNFEEVAKMKIYTQ- 296

Query: 318  RNALKYVDKLIKG------TTFPPG-ESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQ 370
            + AL+Y+   +K       +T   G E+    +  +L       ++KA ++  M + ++ 
Sbjct: 297  QQALEYIGSKVKTVRRQKLSTLQEGIEAIATTVIAHLTVEALDFREKALYIAVMTRRVVM 356

Query: 371  AYSGRRKCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKRMAKALQRDL 419
            A    +  D+RD   NKRLELAG+L+             + K +I    K+  +A++ D 
Sbjct: 357  AMHNPKMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNNDFKANIDKVLKKPNRAMEYDA 416

Query: 420  YGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDL 479
                    +   + ++ +++GL+RA STG WS    + ER +G+   L R + +  L  +
Sbjct: 417  L-------LSINVHSNNISSGLNRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALGMM 468

Query: 480  RRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLVSTSILEPIF 538
             R   Q + + KV   R   PS +G +C   TP+GE CGLVKNL + T + +    EPI 
Sbjct: 469  TRISSQFEKSRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEEPIK 528

Query: 539  EQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEI 598
            +  F  G+E +    S SL   + V+++G  +GV +    FVS  R  RR  ++   + I
Sbjct: 529  KLCFLLGVECINVVDSDSLHLNYCVYLNGTIVGVIRFPTKFVSHFRNLRRSGKVSEFISI 588

Query: 599  KRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGIIELV 651
              +  Q  V I  D GRI RPL++V N GK       ++ L   +  F   L  G++E +
Sbjct: 589  YTNSHQKAVHIATDGGRICRPLIIV-NEGKSLVTAQHLRQLLDGHLQFDDFLKLGLVEYL 647

Query: 652  GTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLY 711
               EE D   A       +D+E +     TH E++   +LG   G+IP+ +H+ + R  Y
Sbjct: 648  DVNEENDSFIAL----YERDLEPR----ITHLEIEPFTVLGAVAGLIPYPHHNQSPRNTY 699

Query: 712  QSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPEL 771
            Q      QAIG    N   R+DTL + + YPQ+P+ +T   +           ++   +L
Sbjct: 700  QCAM-GKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIE-----------LIDYDKL 747

Query: 772  YNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRR---S 828
              GQNA VAV  + GY+ ED+LV+N++S++RG  R E  R        K   V +R    
Sbjct: 748  PAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRR--------KLTTVLKRYPNH 799

Query: 829  SDDMVNFGKIQSK---IGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSI------ 879
            + DMV   ++      I +   L  DG   +G  ++SG I + K   + A  S+      
Sbjct: 800  TQDMVGGMRVDESGEPIWQHKPLGPDGLGEVGMKVESGQIYVNKSVPTNASDSVLTQSQA 859

Query: 880  -------KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGF 932
                     +  E   + +V++S +++ +    V LRQ R P LGDKFSS HGQKGV G 
Sbjct: 860  QYRETPVVYRAPEPSHIDQVMMSVSENDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGI 919

Query: 933  LESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATP 992
            + + E+ PF  QG+VPDI++NPH FPSR T G+++E   GK       G+ +G   Y T 
Sbjct: 920  IVNHEDLPFNDQGVVPDIIMNPHGFPSRMTVGKMIELISGKA------GVLNGSLEYGTC 973

Query: 993  FATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFR 1052
            F    ++ +++ L   GF+  G + LY G TGE +++ IF GP +YQ+L HM  DK+  R
Sbjct: 974  FGGSKLENMSQILVNHGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHAR 1033

Query: 1053 NTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKC 1112
              GP   LTRQP   R R GG++ GEMERDC+IA+GA+  L ERL   SD++++ +C KC
Sbjct: 1034 ARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCNKC 1093

Query: 1113 KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                         G      +C  C   ++++K  +PY AKLL QEL SM I  +   E
Sbjct: 1094 -------------GLMGYSGWCTSCKGAENVIKMTIPYAAKLLFQELLSMNIAPRLKLE 1139


>gi|406604716|emb|CCH43851.1| DNA-directed RNA polymerase III subunit [Wickerhamomyces ciferrii]
          Length = 1152

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 368/1188 (30%), Positives = 581/1188 (48%), Gaps = 157/1188 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETI--VEPGYDPSKKGEGEWRYASMRFG 89
            +F    GLV   ++S+N F+   L+K   +  + +  V+P +          +Y  +R G
Sbjct: 59   AFLKVKGLVKQHLDSFNYFVDVDLKKIIKANEKVLSDVDPDF--------YIKYLDIRVG 110

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRH-ARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGR 148
            + +              ++M P H  RL++MTYS+ + V V+   YT+          GR
Sbjct: 111  EAS----------PAARNNMLPPHECRLRDMTYSAPIYVDVE---YTR----------GR 147

Query: 149  EQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG------DCDFDHGGYFIIKGAE 202
            +  + K         + IG++P+M++S+ C + G  +       +C  D GGYFI+ G E
Sbjct: 148  KIIMHK--------GLEIGKMPIMLRSNKCILDGASEAKMASLNECPLDPGGYFIVNGTE 199

Query: 203  KVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLS---- 258
            KV + QEQ+   R+ V            E    + IV+    S   + K    V++    
Sbjct: 200  KVILIQEQLSKNRIIV------------EADEKKQIVQASVTSSTHERKSKTYVVTKNDK 247

Query: 259  VYF----LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEF 314
            +Y     +S E+PI I+  A G+ SD EI+ L+   C D +     FA   +   K   +
Sbjct: 248  IYLKHNSISEEVPIVIVLKAAGIISDLEIMQLV---CGDDAAYQDSFAINFEECAKVGIY 304

Query: 315  RKGRNALKYVD---KLIKGTTFPPGESTEECMNTYLFPSLHGT----KQKARFLGYMVKC 367
             + + AL+++    K ++       +   E + T +   L       ++KA ++  M + 
Sbjct: 305  TQ-QQALEFIGAKVKTMRRAKLSILQEGIEAIATTVIAHLTVNDLDFREKALYIALMTRR 363

Query: 368  LLQAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDR 423
            ++ A    +  D+RD   NKRLELAG+L+    E   K      +  + K L++      
Sbjct: 364  VVMAMHNPKMVDDRDYVGNKRLELAGQLMSLLFEDLFKKFNTDFKANIDKILRKPNRATE 423

Query: 424  TVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTR 483
                +   + ++ +T GL+RA STG WS    + ER +G+   L R + +  L  + R  
Sbjct: 424  FDALLNINIHSNNITTGLNRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALGMMTRIS 482

Query: 484  QQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLVSTSILEPIFEQLF 542
             Q + + KV   R   PS +G +C   TP+GE CGLVKNL + T + +    EPI +  +
Sbjct: 483  SQFEKSRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEEPIKKLCY 542

Query: 543  NSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
              G+E+++   S SL   F V+++G  IG  +    FVS  R  RR  ++   + I  + 
Sbjct: 543  LIGVEEISVIDSASLHDNFGVYLNGTIIGTTRFPTKFVSLFRNLRRTGKVSEFISIYINS 602

Query: 603  LQSEVRIFMDAGRILRPLLVVEN-MGKIKS-----LEGKNYTFQALLDHGIIELVGTEEE 656
             Q  V I  D GRI RPL+++EN   K+K+     L+     F   L  G++E +   EE
Sbjct: 603  HQKAVHIATDGGRICRPLIIIENGESKVKAHHLLKLKQGKLQFDDFLKQGLVEYLDVNEE 662

Query: 657  EDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKH 716
             DC  A       +DI +K     TH E++   +LG   G+IP+ +H+ + R  YQ    
Sbjct: 663  NDCYIAL----YERDITEKA----THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQC-AM 713

Query: 717  SSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQN 776
              QAIG    N   R+DTL + + YPQ+P+ ++   +           ++   +L  GQN
Sbjct: 714  GKQAIGAIAYNQFHRIDTLLYLMVYPQQPMVKSKTIE-----------LIDYDKLPAGQN 762

Query: 777  AIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRR---SSDDMV 833
            A VAV  + GY+ ED+LV+N++S++RG  R + +R        K   V +R    + D++
Sbjct: 763  ATVAVMSYSGYDIEDALVLNKSSIDRGFGRCQVLR--------KNTTVLKRYPNHTKDII 814

Query: 834  NFGKIQSK---IGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHT------ 884
               +++       +  SL  DG   +G  ++SG + I K   + A  SI  + T      
Sbjct: 815  AGMRVKDNGEPTFQHASLGPDGLAEVGTRVESGQVYINKSIPTNAADSIMNQDTGEYRET 874

Query: 885  -------ERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQE 937
                   E   + +V+++++D+ +    V LRQ R P LGDKFSS HGQKGV G +  QE
Sbjct: 875  PVVYKAPEPSYIDQVMMTTSDNDQELIKVLLRQTRRPELGDKFSSRHGQKGVCGIIVQQE 934

Query: 938  NFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPS 997
            + PF   GI PDI++NPH FPSR T G++LE   GK       G+ +G   Y T F    
Sbjct: 935  DLPFNDDGISPDIIMNPHGFPSRMTVGKMLELVSGKA------GVLNGSLEYGTCFGGSD 988

Query: 998  VDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPV 1057
            ++ +++ L   GF+  G + LY G TGE +++ IF GP +YQ+L HM  DK+  R  GP 
Sbjct: 989  LEDMSKILMDKGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPR 1048

Query: 1058 HPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVAN 1117
              LTRQP   R R GG++ GEMERDC+IA+GA+  L ERL   SD++ + IC KC     
Sbjct: 1049 AVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFDVDICNKC----- 1103

Query: 1118 VIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
                    G      +C  C + +++++  +PY AKLL QEL SM I 
Sbjct: 1104 --------GLMGYNGWCTSCKNAENVIRMQIPYAAKLLFQELLSMNIA 1143


>gi|330934625|ref|XP_003304626.1| hypothetical protein PTT_17275 [Pyrenophora teres f. teres 0-1]
 gi|311318641|gb|EFQ87258.1| hypothetical protein PTT_17275 [Pyrenophora teres f. teres 0-1]
          Length = 1214

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 369/1199 (30%), Positives = 573/1199 (47%), Gaps = 159/1199 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++SYN F+   L+K   +     V   +DP    E    Y  +R    
Sbjct: 113  AFLKTKGLVKQHVDSYNHFVDVELKKIIKA--NRFVRSDFDPKFLLE----YTDIRV--- 163

Query: 92   TLDKPSFFAGNGGDEHDM-------FPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKF 144
                    + N  +E D+        P   RL++MTY++ + V +   +YT+      + 
Sbjct: 164  -------LSPNRQEEDDLEHHRSTITPNECRLRDMTYAAPIVVDI---IYTRGNAKVKR- 212

Query: 145  KTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD--------CDFDHGGYF 196
                             T I IGR+P+M+KS+ C +   +K D        C  D GGYF
Sbjct: 213  -----------------TGIKIGRMPIMLKSNKCVL--ADKSDREMAVMDECPLDPGGYF 253

Query: 197  IIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKV 256
            I +G EKV + QEQ+   R+ V ++ G   A  + +   R     V   K      G   
Sbjct: 254  ITRGQEKVILVQEQLNKNRVIVESAKGIMQASVTSSTHERRTKTYVIQKK------GLMY 307

Query: 257  LSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRK 316
            L    LS EIPI  +  ALGV+SDKEI+ +I    ED +  +  F++  +A  K   F +
Sbjct: 308  LRHNTLSEEIPIVFVMKALGVASDKEILVMI--AGEDSAYQDN-FSTNFEACAKEKIFTQ 364

Query: 317  GRNALKYVDKLIKGTTFPPGESTE--------ECMNTYLFP--SLHGT--KQKARFLGYM 364
             R AL+Y+   ++    P G S          EC++  + P   + GT  + KA ++  M
Sbjct: 365  ER-ALEYIGHRVRLVKKPLGTSRNRNYHLEAIECLSNVVLPHVPVEGTNYRPKALYVALM 423

Query: 365  VKCLLQAYSGRRKCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKRMAK 413
             + +L A    +  D+RD   NKRLEL+G++L             + K+ I    K+  +
Sbjct: 424  ARRVLMAMQNPKLVDDRDYVGNKRLELSGQMLSLLFEDHFKRFNHDFKLSIDKVLKKPIR 483

Query: 414  ALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPL 473
            A + D +         + +  + +T G+ RA +TG WS    + +R +G+   L R + +
Sbjct: 484  AQEFDAFS-------HFSVHKNHITMGVERAIATGNWSLKRFKMDR-AGVTHVLSRLSYI 535

Query: 474  QTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLVSTS 532
              L  + R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL + T + +  
Sbjct: 536  AALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTED 595

Query: 533  ILEPIFEQLFNSGMEKLADDASYSLG--GKFKVFVDGDWIGVCKDSLSFVSELRRKRRRK 590
              +P+ + +F  G + +       +   G + + ++G  I +      F++  R+ RR  
Sbjct: 596  DDDPVRKIVFMLGAQDICSLTGEDIHAEGVYSLCLNGTPIAITDRPKQFLNSFRQLRRMG 655

Query: 591  ELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLD 644
             +     I  D    EV I  D GRI RP+++VEN         +K+L      F+  L 
Sbjct: 656  RVSEFTSIHIDHDHCEVHIATDEGRICRPMIIVENQRSKVTSRYLKALRKGTLDFEDFLT 715

Query: 645  HGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHD 704
             G++E + T EE D   A      LK+ +  +    TH E++   +LG   G+IP+ +H+
Sbjct: 716  RGLVEYLDTNEENDTNIA------LKETDINQ--HTTHLEIEPFTILGAVAGLIPYPHHN 767

Query: 705  HARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNH 764
             + R  YQ      QAIG    N   R+DTL + + YPQ+P+ +T   +           
Sbjct: 768  QSPRNTYQCAM-GKQAIGAIAYNQFNRIDTLLYLMVYPQQPMVKTRTIE----------- 815

Query: 765  ILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQV 824
            +    +L  GQNA VAV  + GY+ ED+L++N+AS +RG  R + ++ +  +     ++ 
Sbjct: 816  LTKYDKLPAGQNATVAVMSYSGYDIEDALILNKASCDRGFGRCQVMKKHVTQ-----LKT 870

Query: 825  KRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVI---------GKYADSGA 875
                + D +N G + +      ++  DG   +GA +++GD  +         G   ++  
Sbjct: 871  YANGTSDRINAGALDTDNKSHQAIGKDGIAQVGARIEAGDAYLLKSIPLDTAGPATNTYK 930

Query: 876  DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLES 935
            D   K K+ +   + K  ++ N+ G     +  RQ R P LGDKFSS HGQKG  G +  
Sbjct: 931  DKPEKYKNPDFSYIDKACVTENEAGVTLIKLLFRQTRRPELGDKFSSRHGQKGTTGLIVQ 990

Query: 936  QENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFAT 995
            QE+ PF  QGI PDI++NPH FPSR T G+++E   GK       G+ +G   Y T F  
Sbjct: 991  QEDMPFNDQGICPDIIMNPHGFPSRMTVGKMMELLSGKA------GVLNGTLEYGTAFGG 1044

Query: 996  PSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTG 1055
             +V+ +++ L   GFS  G + L  G TGE  +   F GP +YQ+L HM +DK+  R  G
Sbjct: 1045 STVEDMSKILVDKGFSYTGKDYLTSGITGEAHQFYTFFGPIYYQKLKHMVQDKMHSRARG 1104

Query: 1056 PVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNV 1115
            P   LTRQP   R R GG++ GEMERDCLIA+GA+  L ERL   SD++ + +C KC   
Sbjct: 1105 PRAILTRQPTEGRARDGGLRLGEMERDCLIAYGASQLLLERLMLSSDAHTVDVCEKC--- 1161

Query: 1116 ANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMG--ITLKFDTEF 1172
                      G+     YC++C+S   + K  +PY AKLL QEL SM   +T+  + EF
Sbjct: 1162 ----------GQMGYSGYCKLCESEKAVRKITMPYAAKLLIQELGSMNVKVTIGLEDEF 1210


>gi|393911066|gb|EJD76149.1| DNA-directed RNA polymerase [Loa loa]
          Length = 1136

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 373/1204 (30%), Positives = 575/1204 (47%), Gaps = 162/1204 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I SY+ F+   ++K   +     +    +PS       +Y  +R G  
Sbjct: 21   AFLQVRGLVKQHIASYDYFVSTEIKKILRANDR--ITSDANPS----FYLKYLDIRVGM- 73

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
                PS   G       + P   RL++MTYS+ + V +++   +Q+              
Sbjct: 74   ----PSSEEGFNQINDKISPHECRLRDMTYSAPISVDIEYTRGSQR-------------- 115

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGAEKVF 205
                VL +    ++IG++PVM++S  C +K + + +      C +D GGYFII+G+EKV 
Sbjct: 116  ----VLRN---GLVIGKMPVMLRSSKCVLKNMNESELAHVQECPYDPGGYFIIRGSEKVV 168

Query: 206  VAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV---YF- 261
            + QEQ+   R+ +             N +  L   +  +S  ++ K    + S    Y+ 
Sbjct: 169  LIQEQLSKNRIMIG-----------RNSKKELQCEI--LSSTQERKSKTYIASKKQRYYV 215

Query: 262  ----LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG 317
                LS ++P+ I+F A+G  SD +IV+ +     +   +  +  SI +  +     ++G
Sbjct: 216  RHNQLSDDVPVAIVFKAMGFESDHDIVSAVGL---EEKFVAAMAPSIEECASHQIVTQEG 272

Query: 318  RNALKYVDKLIKGTTFPP------------GESTEECMNTYL--FPSLHGT-KQKARFLG 362
              AL+Y+   +K   F P             E+ +   N  +   P   G  K KA +LG
Sbjct: 273  --ALQYIASKVKMRKFGPFASGTSSTLPREHEAIDFLSNLMIAHVPCPDGNMKMKAIYLG 330

Query: 363  YMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQR---DL 419
             M++ L+QA  G  +CD+RD + NKRLELAG LL     +      KR    L+R   + 
Sbjct: 331  LMIRRLMQAEVGDTECDDRDFYGNKRLELAGSLL----ALLFEDVFKRFNSELKRIADNS 386

Query: 420  YGDRTVRPIEY--YLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLV 477
             G     P++   ++   ++TN L  A +TG W+    + ER  G+   L R + +  L 
Sbjct: 387  LGKTLAAPLDIVKHMRQDLITNALVDALATGNWTIKRFKMER-QGVTQVLSRLSYISVLG 445

Query: 478  DLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEP 536
             + R     + T KV   R   PS WG +C   TP+GE+CGLVKNL +   ++T S  EP
Sbjct: 446  MMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEGESCGLVKNLALISHITTDSDEEP 505

Query: 537  IFEQLFNSGMEKLADDASYSLGGKFK--VFVDGDWIGVCKDSLSFVSELRRKRRRKELPT 594
            +   L+NSG+E +      ++       VF++G  +G+  D    VS +R  RR   L  
Sbjct: 506  VIRLLYNSGVEDVKSLHFSAIHSPVYHIVFLNGVIVGLTIDPQRIVSTIRAVRRHGLLNE 565

Query: 595  QVEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGII 648
             V +  +  Q  V I  D GR+ RP ++V+N         I+ L+     F+  +D G+I
Sbjct: 566  FVSVSTNAAQRSVYIASDGGRLCRPYIIVKNGVPQVTQEHIEELKKGCRIFEDFVDDGLI 625

Query: 649  ELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARR 708
            E +   E  D   A          E++     TH E++   LLG+  G+IP+ +H+ + R
Sbjct: 626  EYLDVNEMNDASIAV--------YENQIKPNTTHLEIEPFTLLGVCAGLIPYPHHNQSPR 677

Query: 709  VLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPR 768
              YQ      QA+G    N   R+D+L + L YPQRPL +T   +      + +   LP 
Sbjct: 678  NTYQC-AMGKQAMGTIGYNQQKRIDSLMYLLVYPQRPLVKTKTIE------FCNFEKLP- 729

Query: 769  PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRS 828
                 GQNA++AV  + GY+ ED+LV+N+ASL+RG  R    +  KA       Q   R 
Sbjct: 730  ----AGQNAVIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHAKATARKYPNQTFDRL 785

Query: 829  SDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKY-----ADSGA-------- 875
                V     +  I +   LD +G  ++GA + S  ++I K+      ++GA        
Sbjct: 786  MGPTVE-ATTRKPIYKHQVLDQEGIVYVGACIHSKQVMINKHMPVVSTEAGATTSSNNDG 844

Query: 876  -----------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMH 924
                       D S+  ++      ++V+L+ N+D  +   V LRQ R P LGDKFSS H
Sbjct: 845  TNVSSHEVEYKDVSVVYRNPVPSYAERVLLTYNEDDAHLIKVLLRQTRRPELGDKFSSRH 904

Query: 925  GQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICS 984
            GQKGV G +  QE+ PF   G+ PD+++NPH +PSR T G+L+E   GK        + S
Sbjct: 905  GQKGVCGLIAQQEDMPFNDLGMCPDMIMNPHGYPSRMTVGKLMELLSGKN------AVLS 958

Query: 985  GLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHM 1044
            G   Y T F    VD + E+L   GF+  G + L  G TG+ + + I+ GP +YQ+L HM
Sbjct: 959  GKFHYGTAFGGDQVDVVCEELAARGFNYLGKDMLTSGITGQQLCAYIYFGPIYYQKLKHM 1018

Query: 1045 SEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSY 1104
              DK+  R  GP   LTRQP   R R GG++ GEMERDCLIA+GA+  L ERL   SD +
Sbjct: 1019 VLDKMHARARGPRAVLTRQPTEGRARDGGLRLGEMERDCLIAYGASMLLMERLMVSSDEF 1078

Query: 1105 QMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
            ++ +C +C            G    +G +C++C S   +    +PY  KLL QEL SM I
Sbjct: 1079 KVDVCSQC------------GLIGYKG-WCQMCRSSRTMATIKIPYACKLLFQELQSMNI 1125

Query: 1165 TLKF 1168
              K 
Sbjct: 1126 VPKI 1129


>gi|407464206|ref|YP_006775088.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrosopumilus sp.
            AR2]
 gi|407047394|gb|AFS82146.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrosopumilus sp.
            AR2]
          Length = 1115

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 368/1186 (31%), Positives = 583/1186 (49%), Gaps = 151/1186 (12%)

Query: 38   GLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPS 97
            G+    +NS++EF++ GLQ   +  G+  +E    P K          ++ G+V L +P 
Sbjct: 20   GIARQHLNSFDEFLERGLQSIINEVGQIDIENAEYPYK----------IQLGKVKLQQPR 69

Query: 98   FFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVL 157
                +G   H + P  ARL+N++YS+   V ++  V    ++   +F             
Sbjct: 70   MMELDGSITH-ITPAEARLRNVSYSA--PVMMEASVVEDGKILESRF------------- 113

Query: 158  SDETTNIIIGRIPVMVKSDLCWM------KGVEKGDCDFDHGGYFIIKGAEKVFVAQEQI 211
                  + IG +PVM KS+ C +      K +E G+   D GGYFII G+E+V V  E +
Sbjct: 114  ------VHIGDVPVMAKSNACILHNFSSQKLIEHGEDPNDPGGYFIINGSERVIVGLEDL 167

Query: 212  CLKRLWVS-NSMGWTVAYKSENKRNRLIVRLVDMSKFEDI--KGGEKVLSVYFLSTEIPI 268
               ++ V   ++G  + +K++   + +  R    +K E +    G  V  +     +IP+
Sbjct: 168  SYNKIIVDRETVGGNIVFKAKVYSSIVGYR----AKLELVMKNDGLIVARIPGSPVDIPV 223

Query: 269  WILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLI 328
              L  ALG+ SD+EI +++       S+++ +   +  +  K  +    ++A+ Y+ K I
Sbjct: 224  VTLMRALGLESDREIASVV-------SLVDDIQDELEGSFEKAGDVPTSKDAIVYISKRI 276

Query: 329  KGTTFPPG-------ESTEECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRRK 377
                  PG       +  E  ++  L P L       K+KA+FLG     LL+   G   
Sbjct: 277  A-----PGMLEEFQIKRAETLLDWGLLPHLGKHPENRKEKAQFLGEAACKLLELKLGWIT 331

Query: 378  CDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASIL 437
             D++D + NK ++ AG++L    +    +  + M   L+R     R +  +   +   I+
Sbjct: 332  PDDKDHYGNKVIKFAGQMLADLFRTAFRNLVRDMKYQLERS-GQKRGINAVAAAIRPGII 390

Query: 438  TNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARY 497
            T+ L+ A +TG W        R+ G+   L R N L T+  LRR +  +  T    +AR 
Sbjct: 391  TDKLNNAIATGNWGR-----GRV-GVTQLLDRTNYLSTISHLRRIQSPLSRTQPNFEARD 444

Query: 498  PHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSIL-EPIFEQLFNSGMEKLADDASYS 556
             H +H+G+IC   TP+G NCGLVKNL ++G++S ++  E I E+L++ G     D     
Sbjct: 445  LHATHFGRICPSETPEGSNCGLVKNLALSGIISVNVPNEEIVEKLYDLGTVHFFDAKEDL 504

Query: 557  LGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIK--RDELQSEVR---IFM 611
                 +VFVDG  IG  KD       LR  RR  ++   V +   + E++   R   +  
Sbjct: 505  KKDGTRVFVDGRLIGYYKDGSELAESLRELRRNSKIHPHVGVSFHKSEIEGSTRRLYVNC 564

Query: 612  DAGRILRPLLVVENMGKIKSLE------GKNYTFQALLDHGIIELVGTEEEEDCCTAWGI 665
            +AGR+LRPL+++++   + + E       K  ++  LL  G++E++   EEE+C      
Sbjct: 565  NAGRVLRPLIIIKDNKPLLTSELLDKISKKLLSWTDLLRMGVLEMIDANEEENC------ 618

Query: 666  KYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPT 725
             Y+  D +D K  K TH E+    +LG    IIP+  H+ + R  Y+S   + Q++GF T
Sbjct: 619  -YVTLDEKDAK--KHTHLEVFPPAILGAGASIIPYPEHNQSPRNTYESA-MAKQSLGFST 674

Query: 726  TNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHL 785
               +       H + YPQ P+  T     LG        +  RP    GQN IVAV    
Sbjct: 675  PMMNTSTYVRQHFMLYPQVPIVNTKAMKLLG--------LEDRPA---GQNCIVAVLPFD 723

Query: 786  GYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF-----GKIQS 840
            GYN ED++V+++AS++RG+ R+   R Y AE   K+     R S ++ N      G    
Sbjct: 724  GYNIEDAIVLSKASVDRGLGRTFFFRIYDAEA--KQYPGGMRDSFEIPNAEDNIRGYKGE 781

Query: 841  KIGRVDSLDDDGFPFIGANLQSGDIVIGK------------YADSGA---DHSIKLKHTE 885
            +  R+  L+DDG     A ++ GDI+IGK            +  SG    D SI ++ +E
Sbjct: 782  RAYRL--LEDDGVVASEAPVKGGDILIGKTSPPRFMEEYREFESSGPYRRDTSIGVRPSE 839

Query: 886  RGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQG 945
             G++  VV++ +++G     +  R +R P +GDKF+S HGQKGVLG L   E+ P+T  G
Sbjct: 840  TGVIDTVVMTQSNEGGKMYKIRARDMRIPEIGDKFASRHGQKGVLGILAKAEDLPYTASG 899

Query: 946  IVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRY-ATPFATPSVDAITEQ 1004
            + PD++INPHAFPSR T G ++E+  GK  A  GK       R+  + F    +  + E 
Sbjct: 900  MSPDVLINPHAFPSRMTVGMMMESICGKAAALRGK-------RFDGSAFVGEKMPEVKEV 952

Query: 1005 LHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQP 1064
            +   GF   G E +YDGRTG+     +FIG  +YQ+L HM  DK+  R  G V  LT+QP
Sbjct: 953  MDAHGFEYSGKETMYDGRTGKSFPVDVFIGVVYYQKLHHMVADKIHARARGQVQMLTKQP 1012

Query: 1065 VADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVA--NVIQRV 1122
               R R GG++FGEMERDCLIA+GA+  L +RL   SD   + +C +C  VA  +V QR 
Sbjct: 1013 TEGRARGGGLRFGEMERDCLIAYGASMILKDRLLDESDKSDIFVCERCGLVAYHDVKQRK 1072

Query: 1123 VGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
                       CR+C     +   +V Y  KLL QE+ S+ +  + 
Sbjct: 1073 Y---------VCRVCGDKAKVSSVSVAYAFKLLLQEMQSLNVAPRL 1109


>gi|367009214|ref|XP_003679108.1| hypothetical protein TDEL_0A05650 [Torulaspora delbrueckii]
 gi|359746765|emb|CCE89897.1| hypothetical protein TDEL_0A05650 [Torulaspora delbrueckii]
          Length = 1142

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 372/1198 (31%), Positives = 576/1198 (48%), Gaps = 165/1198 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++S+N F+   L+K   +    ++    DP    E   +Y  +R GQ 
Sbjct: 47   AFLKVKGLVKQHLDSFNYFVDVDLRKIIKA--NQLILSDVDP----EFYLKYVDIRVGQR 100

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
            +         NG  ++   P   RL++MTYS+ + V ++   YT+          GR   
Sbjct: 101  S---------NGSKDYLTPPHECRLRDMTYSAPIYVDIE---YTR----------GRNII 138

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG------DCDFDHGGYFIIKGAEKVF 205
            + K+V         IGR+PVM++S+ C +   ++       +C  D GGYFI+ G EKV 
Sbjct: 139  MHKDVE--------IGRMPVMLRSNKCILHESDEAMMAKLNECPLDPGGYFIVNGTEKVI 190

Query: 206  VAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLS----VYF 261
            + QEQ+   R+ V            E    + IV+    S   + K    V++    +Y 
Sbjct: 191  LVQEQLSKNRIIV------------EADEKKAIVQASVTSSTHERKSKTYVVTKNEKIYL 238

Query: 262  ----LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG 317
                ++ +IPI ++  A G+ SD E++ L+   C + S    +FA   +   K + + + 
Sbjct: 239  KHNSIAEDIPIVVVLKACGIVSDLEVMQLV---CGNDSSYQDIFAINLEEAAKLNLYTQ- 294

Query: 318  RNALKYVDKLIKG------TTFPPG-ESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQ 370
            + AL+Y+   +K       +    G E+    +  +L       ++KA ++  M + ++ 
Sbjct: 295  QQALEYIGSKVKTVRRQKLSVLQEGIEAIATTVIAHLTVEALDFREKALYIAIMTRRVVM 354

Query: 371  AYSGRRKCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKRMAKALQRDL 419
            A    +  D+RD   NKRLELAG+L+             + K  I    K+  +A++ D 
Sbjct: 355  AIYNPKMVDDRDYVGNKRLELAGQLISLLFEDLFKKFNSDFKASIDKVLKKPNRAMEYDA 414

Query: 420  YGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDL 479
                    +   + ++ +T+GL+RA STG WS    + ER +G+   L R + +  L  +
Sbjct: 415  L-------LSINVHSNNITSGLNRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALGMM 466

Query: 480  RRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLVSTSILEPIF 538
             R   Q + + KV   R   PS +G +C   TP+GE CGLVKNL + T + +    EPI 
Sbjct: 467  TRISSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIK 526

Query: 539  EQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEI 598
            +  +  G+E ++   S SL   + V ++G  IG  K    F++  R  RR  ++   + I
Sbjct: 527  KLCYLLGVEDISLLDSASLHLNYGVHLNGTLIGTTKYPTKFITHFRNLRRSSKVSAFISI 586

Query: 599  KRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIELVG 652
              +  Q  V I  D GRI RPL++V +         +K L      F   L  G++E + 
Sbjct: 587  YANSHQKAVHIATDGGRICRPLIIVSDGQSRVKADHLKKLLDGELVFDDFLKLGLVEYLD 646

Query: 653  TEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 712
              EE D   A       KDI+       TH E++   +LG   G+IP+ +H+ + R  YQ
Sbjct: 647  VNEENDSFIAL----YEKDIDQN----ITHMEIEPFTVLGAVAGLIPYPHHNQSPRNTYQ 698

Query: 713  SQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELY 772
                  QAIG    N   R+DTL + + YPQ+P+ +T   +           ++   +L 
Sbjct: 699  C-AMGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIE-----------LIDYDKLP 746

Query: 773  NGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRR---SS 829
             GQNA VAV  + GY+ ED+LV+N++S++RG  R E  R        K   V +R    +
Sbjct: 747  AGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRR--------KNTTVLKRYPNHT 798

Query: 830  DDMVNFGKIQSK---IGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSI------K 880
             D++   ++      I +   L  DG   +G  L SG I I K   + +   +      +
Sbjct: 799  QDIIGGMRVDENGEPIWQHKCLGPDGLGEVGMKLDSGQIYINKSIPTNSGDGVLTNTQSQ 858

Query: 881  LKHT-------ERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
             K T       E   + +V++S +D+ +    V LRQ R P LGDKFSS HGQKGV G +
Sbjct: 859  YKETPVIYRAPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGII 918

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
              QE+ PF  QGI PDI++NPH FPSR T G+++E   GK       G+ +G   Y T F
Sbjct: 919  VKQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMIELISGKA------GVLNGTLEYGTCF 972

Query: 994  ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
                ++ +T+ L   GF+  G + LY G TGE +++ IF GP +YQ+L HM  DK+  R 
Sbjct: 973  GGSKLEDMTKILVDNGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARA 1032

Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
             GP   LTRQP   R R GG++ GEMERDC+IA+GA+  L ERL   SD++++ +C KC 
Sbjct: 1033 RGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCNKC- 1091

Query: 1114 NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                        G      +C  C S ++I K  +PY AKLL QEL SM I  +   E
Sbjct: 1092 ------------GLMGYSGWCTTCRSAENINKMTIPYAAKLLFQELLSMNIAPRLRLE 1137


>gi|388581064|gb|EIM21375.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Wallemia sebi CBS 633.66]
          Length = 1152

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 362/1203 (30%), Positives = 564/1203 (46%), Gaps = 162/1203 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN F+   L+    +  +  V    DP            +++  +
Sbjct: 46   AFLKTRGLVKQHIDSYNHFVDVELKNIIKANEK--VTSDVDPK---------FYLKYTDI 94

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             +  P     +  D+  + P  ARL++MTYS+ +++ V++              T  +Q 
Sbjct: 95   HVGNPERQDADSVDK-SITPHEARLRDMTYSAPIRISVEY--------------TRGKQI 139

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG------DCDFDHGGYFIIKGAEKVF 205
            +++         I IGR+PVM++S+ C + G ++       +C  D GGYF++KG EKV 
Sbjct: 140  VRRR-------GIPIGRLPVMLRSNKCILSGKDEETLARYRECPLDPGGYFVVKGTEKVI 192

Query: 206  VAQEQICLKRLWVSN----SMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYF 261
            + QEQ+   R+ +      ++  +V   +  ++++          +   K G+  L    
Sbjct: 193  LVQEQLSKNRMIIETDPKKNVQASVTSSTHERKSK---------SYVATKNGKIYLRHNS 243

Query: 262  LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG---- 317
            +  ++PI +   A+GV+SDKEI+ L+     D     + + +I +A       R G    
Sbjct: 244  IGDDVPIVVALKAMGVTSDKEILQLV--AGHDDEYKEVFYINIEEA------LRMGIHTE 295

Query: 318  RNALKYVDKLIKGT---------TFPPGESTEECMNTYLFPSLH----GTKQKARFLGYM 364
              AL+++    K             P  E   E ++T +   +       + KA ++  M
Sbjct: 296  MQALEWIGARSKSARRAVGPAHQKRPVWEDAIETLSTIVLAHVPVENLNFRPKAIYVAVM 355

Query: 365  VKCLLQAYSGRRKCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKRMAK 413
            V+ +L A    +  D+RD   NKRLELAG+LL             +LK++I    K+  +
Sbjct: 356  VRRVLMAMVDEKMLDDRDYVGNKRLELAGQLLSLLFEDLFKKFNHDLKLNIDKVLKKPNR 415

Query: 414  ALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPL 473
              + D Y        +       +T+G  RA STG WS    + ER +G+   L R + +
Sbjct: 416  TTEFDAY-------TQLLYGGDHITSGFVRAISTGNWSLKRFKMER-AGVTHVLSRLSYI 467

Query: 474  QTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI 533
              L  + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T +
Sbjct: 468  SALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDV 527

Query: 534  LE-PIFEQLFNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVSELRRKRRRK 590
             E PI    +  G+E +       L  +  + V ++G+ IGV +  L FV++ R+ RR  
Sbjct: 528  EEEPIVNICYMLGVEDVCLLTGTELYRRDTYIVSLNGNLIGVTRHPLKFVTQFRKLRRNG 587

Query: 591  ELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENM------GKIKSLEGKNYTFQALLD 644
             +   V +  +   + V I  D GRI RP+++VEN         IK L+     F A L 
Sbjct: 588  FINEFVSVYINHHHNSVNISSDGGRICRPMIIVENSFSKVTSEHIKMLKAGKIDFDAFLT 647

Query: 645  HGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHD 704
             G++E +   EE D   A        DI +      TH E++   LLG   G+IP+ +H+
Sbjct: 648  QGLVEYLDVNEENDAYIAIS----ENDITETS----THLEIEPFTLLGACAGLIPYPHHN 699

Query: 705  HARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNH 764
             + R  YQ      QAIG    N   R+DTL + + YPQ+P+ +T   + +G        
Sbjct: 700  QSPRNTYQCAM-GKQAIGAIAYNQLNRIDTLLYLMVYPQQPMVKTKTIELIG-------- 750

Query: 765  ILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQV 824
                 +L  GQNA+VAV  + GY+ ED+L++N+ASL+RG  R + +R Y   +       
Sbjct: 751  ---YDKLPAGQNAMVAVMSYSGYDIEDALILNKASLDRGFGRCQVMRKYSTMIRKYPNGT 807

Query: 825  KRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA-DHSIK--- 880
              R +D  +    +  K  +  +L+ DG    G  + + D+++ K + S A D+SI    
Sbjct: 808  HDRLADAPIGLDGVIPK--KYQALEPDGIAGAGERVDTNDVIVNKQSPSNALDNSINPGQ 865

Query: 881  ------------LKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKG 928
                         K    G V +V+++  +  +      LRQ R P LGDKFSS HGQKG
Sbjct: 866  ADSSTYKNAPMSYKSPVPGFVDQVLITDTESEQTLVKALLRQTRRPELGDKFSSRHGQKG 925

Query: 929  VLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKR 988
            V G +  Q + PF  +GI PD+++NPH FPSR T G+++E   GK       G+  G   
Sbjct: 926  VCGLIVPQADMPFNDRGITPDVIMNPHGFPSRMTVGKMIELLSGKA------GVIRGTLE 979

Query: 989  YATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDK 1048
            Y T F    VD +++ L   G+S  G E +  G TGE      ++GP +YQ+L HM  DK
Sbjct: 980  YGTAFGGSKVDDMSQVLIDNGYSYAGKETMTSGITGECHTFYTYLGPIYYQKLKHMVLDK 1039

Query: 1049 VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHI 1108
            +  R  GP   LTRQP   R R GG++ GEMERD L+ +GAA  + ERL   SD + + +
Sbjct: 1040 MHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDALLGYGAAHLVRERLMLSSDLFHVDV 1099

Query: 1109 CRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
            C  C             G      +C +C S  +I    +PY AKLL QEL +M I  K 
Sbjct: 1100 CNDC-------------GTMGYNTFCPMCKSQKNISNIQIPYAAKLLFQELLAMNIYPKI 1146

Query: 1169 DTE 1171
              E
Sbjct: 1147 SLE 1149


>gi|331225399|ref|XP_003325370.1| DNA-directed RNA polymerase III subunit RPC2 [Puccinia graminis f.
            sp. tritici CRL 75-36-700-3]
 gi|309304360|gb|EFP80951.1| DNA-directed RNA polymerase III subunit RPC2 [Puccinia graminis f.
            sp. tritici CRL 75-36-700-3]
          Length = 1272

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 373/1204 (30%), Positives = 558/1204 (46%), Gaps = 163/1204 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETI--VEPGYDPSKKGEGEWRYASMRFG 89
            +FF    L    ++ +N F    LQ    +    I  V+P +              + + 
Sbjct: 164  AFFKGKRLGKQHLDLFNYFGDVDLQSILRANATVISDVDPNF-------------HLSYL 210

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
             + + +PS           + P   RL+++TYS+ + V +Q   YT+             
Sbjct: 211  DINVGEPSRLDTGSATNKRITPHECRLRDITYSAPISVTIQ---YTKG------------ 255

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
                K VLS     I IGRIP+M++S+ C + G       +  +C  D GGYF++KG EK
Sbjct: 256  ---NKRVLSK---GIPIGRIPIMLRSNKCVLTGKSDAELAKMTECPLDPGGYFVVKGTEK 309

Query: 204  VFVAQEQICLKRLWVSNS------MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVL 257
            V + QEQ+   R+ +         M    +   E K    +V           K  +  L
Sbjct: 310  VILVQEQLSKNRILIETDSRKGTIMASVTSSTHERKSKTYVV----------TKNSKVYL 359

Query: 258  SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDC-SILNILFASIHDADNKCDEFRK 316
                +  EIPI I   A G++SD+E+V ++    +D  +  +I     H+A         
Sbjct: 360  KHNSIQEEIPIAIALKAYGITSDREVVQIVCGNNDDYRAAFSICMEHCHEAG-----VFT 414

Query: 317  GRNALKYVDKLIK--------GTTFPPGESTEECMNTYLFPSLHG----TKQKARFLGYM 364
             + AL Y+ K +K        G   P  E   E ++T +   +       + KA +L  M
Sbjct: 415  QKQALAYIGKSVKMVKKGPVAGPKRPLTEEALEVLSTVVLAHVPADNLNLQPKAIYLAVM 474

Query: 365  VKCLLQAYSGRRKCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKRMAK 413
             + ++QA +  +  D+RD   NKRLELAG+LL             +LK++I    K+  +
Sbjct: 475  ARRVVQAMANPKLVDDRDYVGNKRLELAGQLLSLLFEDLFKKFNTDLKLNIDKVLKKPNR 534

Query: 414  ALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPL 473
              + D          ++ + A  ++NG  RA STG WS    + ER +GI   L R + +
Sbjct: 535  TTEFDAIN-------QFRMHADHISNGFIRAISTGNWSIKRFKMER-AGITHVLSRLSYI 586

Query: 474  QTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI 533
              L  + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T  
Sbjct: 587  SALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDT 646

Query: 534  -LEPIFEQLFNSGMEKLAD--DASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRK 590
              EPI+   +  G E ++        L   + VF++G+ +G+ +    FV   R+ RR  
Sbjct: 647  DEEPIWNVAYTIGCEDISSVTGTELYLPRHYIVFINGNILGLTRSPERFVEVFRQFRRAG 706

Query: 591  ELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLD 644
            ++   V I  +  Q  V I  D GRI RP+++V N         I+ L+    +F   L 
Sbjct: 707  KISEFVSIYMNADQQTVNIATDGGRICRPMIIVTNGDSMVKTHHIEKLKAGELSFDDFLS 766

Query: 645  HGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHD 704
             G+IE +   EE D   A       +DI+       TH E++   LLG   G+IP+ +H+
Sbjct: 767  QGLIEYLDCNEENDSFIAL----YEEDIDSYT----THLEIEPFTLLGAVAGLIPYPHHN 818

Query: 705  HARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNH 764
             + R  YQ      QAIG    N   R+DTL + + YP  P+ RT   + +G        
Sbjct: 819  QSPRNTYQCAM-GKQAIGVIAYNQLHRIDTLLYLMVYPHHPMVRTKTIELVG-------- 869

Query: 765  ILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQV 824
                 +L  GQNA VAV  + GY+ ED+L++N+ASL+RG  R +  R   A +       
Sbjct: 870  ---YDKLPAGQNATVAVMSYSGYDIEDALILNKASLDRGFGRCQVFRKATAMIKRYPNGT 926

Query: 825  KRRSSDDMVNF-GKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA-DHSI--- 879
              R +D   +  G++  K       DD G   +G  + +G++ I K + S A D+S+   
Sbjct: 927  YDRIADPPRDPEGQVLEKW---KPCDDGGVADVGMKVYNGNVYINKQSPSNANDNSVGAG 983

Query: 880  --------KLKHTERGMV----QKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQK 927
                        T RG V     KV+++  +  +    V LRQ R P LGDKFSS HGQK
Sbjct: 984  AATVTSWANTPMTYRGTVPSYIDKVMVTDTESDQTLVKVLLRQTRRPELGDKFSSRHGQK 1043

Query: 928  GVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLK 987
            GV G +  QE+ PF  +G  PDI++NPH FPSR T G++LE   GK       G+  G  
Sbjct: 1044 GVCGLIVQQEDMPFNDRGTCPDIIMNPHGFPSRMTVGKMLELLSGKA------GVLRGTV 1097

Query: 988  RYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSED 1047
             Y T F       +++ L   G+S  G + L  G TG+ +   +F+GP +YQ+L HM  D
Sbjct: 1098 EYGTAFGGSKAVEMSKILIEHGYSYLGKDYLTSGITGQPLEHYVFMGPIYYQKLKHMVLD 1157

Query: 1048 KVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMH 1107
            K+  R  GP   LTRQP   R R GG++ GEMERDCLIAHGA+  L ERL   SDS+++ 
Sbjct: 1158 KMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAHGASQLLLERLMLSSDSFELD 1217

Query: 1108 ICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLK 1167
            +C+ C            G     G +C  C +G+ + K  +PY  KLL QEL +M I  +
Sbjct: 1218 VCQDC------------GFMGYNG-WCVRCKNGNSVTKITIPYACKLLFQELMAMNIAPR 1264

Query: 1168 FDTE 1171
               E
Sbjct: 1265 LVLE 1268


>gi|302927105|ref|XP_003054428.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256735369|gb|EEU48715.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 1156

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 382/1210 (31%), Positives = 572/1210 (47%), Gaps = 163/1210 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN F++  ++    +   TI       S      W    + F  +
Sbjct: 37   AFLKVKGLVKQHIDSYNFFVEQEIKDIVRA-NRTI------RSDVDSNFW----LEFTDI 85

Query: 92   TLDKPSFFAGNGGDEH-DMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
             +D+P          H D+ P   RL++MTY++ + V +Q+          DK +  R+ 
Sbjct: 86   RVDRPRRQDWQDAKSHTDVTPMECRLRDMTYAAPILVDIQY--------IRDKQRIVRK- 136

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFIIKGAEKV 204
                        N+ +GR+PVM+KS  C + G       E  +C  D GGYFII G EKV
Sbjct: 137  ------------NVPLGRMPVMLKSSKCRLGGATNTQMEEMNECPLDPGGYFIIGGTEKV 184

Query: 205  FVAQEQICLKRLWV-----SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
             + QEQ+   R+ V     +N +  +V   +  ++++  V L         K    +L+ 
Sbjct: 185  ILIQEQLSKNRVIVEADEKNNVISASVTSSTHERKSKTYVTL---------KKDRILLTH 235

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLI---DFTCEDCSILNILFASIHDADNKCDEFRK 316
              L   IPI I+  ALG  SD EI+ L+   D   +D  ++N       D   K   F +
Sbjct: 236  NVLVEGIPIVIVLKALGGKSDMEIMELVAGSDGRYQDEFLVNF------DEATKAGIFTQ 289

Query: 317  GRNALKYVDKLIKGTT----FPPG---ESTEECMNTYLFPSLHGTK-------QKARFLG 362
               AL+Y+   +K  +    F P       EE ++      +            KA ++ 
Sbjct: 290  -HQALEYIGARVKMGSRRGQFGPQVRRNHVEEGLDALANLVIAHVPIEELDFYPKAIYVA 348

Query: 363  YMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLER-----------ELKVHIAHARKRM 411
             M + +L A    +  D+RD   NKRLELAG+LL             E+K+ I    K+ 
Sbjct: 349  MMTRKVLMAAHNPKLVDDRDFVGNKRLELAGQLLSLLFEDLFKRFTVEVKMSIDKFLKKN 408

Query: 412  AKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRAN 471
             +A+  D      V  I  +  A+ +  G++RA  TG WS       R +G+   L R +
Sbjct: 409  NRAVPLD-----AVHMISNH--ANTIGIGINRAIQTGNWSVKRFNMNR-AGVTHVLSRLS 460

Query: 472  PLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST 531
             +  L  + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T
Sbjct: 461  YIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCTSDTPEGEACGLVKNLALMTHITT 520

Query: 532  SILE-PIFEQLFN-----SGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRR 585
            ++ E P+ E +         +EK +    +   G + + V+G    + ++   F    R 
Sbjct: 521  NVEEGPVKETILTIDKEVEAIEKFSGSMMHR-EGSYVIHVNGTPFALTRNPKRFAQRFRT 579

Query: 586  KRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTF 639
             RRR  +   V I  +   + + I  D GRI RP ++V+N  +      ++ L+    TF
Sbjct: 580  LRRRGGISPFVGININTHFNAIHIATDEGRICRPYIIVKNGQQKLKPEHLRLLQLGKVTF 639

Query: 640  QALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIP 699
               L  G++E +   EE D         L+   ED+     TH E++   +LG   G+IP
Sbjct: 640  DDFLRQGVVEYLDVNEENDA--------LITIYEDQVTQSTTHLEIEPFTILGAVAGLIP 691

Query: 700  FANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPG 759
            F +H+ + R  YQ      QAIG    N   R+DTL + L YPQRP+   +IS  +   G
Sbjct: 692  FPHHNQSPRNTYQC-AMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPM---VISKTIQLIG 747

Query: 760  YGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDN 819
            Y         +L  GQNA V V  + GY+ ED+LV+N+AS++RG  R +  R Y  E+  
Sbjct: 748  YD--------KLPAGQNATVVVMSYSGYDIEDALVLNKASIDRGFGRCQVFRKYTTELQK 799

Query: 820  KEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA-------- 871
                 + R  D     GK++ +I + + LDDDG   +G  + +G+ +I K          
Sbjct: 800  YPNGRRERIGDPQNEEGKVKQRIKKHEGLDDDGLAIVGYRIHNGEAMIKKETPLDQTTTG 859

Query: 872  ---DSGA----DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMH 924
               D G     D S+  +  +   + KV++S  +       V  RQ R P LGDKFSS H
Sbjct: 860  IGMDRGPSEYRDSSVSYRIADPAYIDKVMVSQTEKDTTVIKVQTRQTRRPELGDKFSSRH 919

Query: 925  GQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICS 984
            GQKGV+G +  QE+ PF+ +G+ PDI++NPH FPSR T G+LLE   GK     G+    
Sbjct: 920  GQKGVVGIIVDQEDLPFSDKGLTPDIIMNPHGFPSRMTVGKLLECLTGKASIIHGRPDYG 979

Query: 985  GLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHM 1044
                +   F +  ++ +++ L   GFS  G +    G TGE + + IF GP +YQRL HM
Sbjct: 980  ----FGDAFRSHPLEEMSKVLVDHGFSWEGKDYFTSGVTGEPLEAYIFNGPIYYQRLKHM 1035

Query: 1045 SEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSY 1104
             +DK+  R+ GP   LTRQP   R R GG++ GEMERDCLIA+GA+  L ERL   SD  
Sbjct: 1036 VQDKMHSRSRGPKAILTRQPTEGRSREGGLRLGEMERDCLIAYGASQLLLERLMISSDGT 1095

Query: 1105 QMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSM-- 1162
            ++ IC++C            G    +G YC  C S  ++ K  +PY AKLL QEL SM  
Sbjct: 1096 EIDICQQC------------GLFGYKG-YCHTCKSTREVTKMTMPYAAKLLVQELISMNV 1142

Query: 1163 GITLKFDTEF 1172
            G+ L+ + EF
Sbjct: 1143 GVRLQMEDEF 1152


>gi|396477501|ref|XP_003840283.1| similar to DNA-directed rna polymerase III subunit [Leptosphaeria
            maculans JN3]
 gi|312216855|emb|CBX96804.1| similar to DNA-directed rna polymerase III subunit [Leptosphaeria
            maculans JN3]
          Length = 1257

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 366/1192 (30%), Positives = 560/1192 (46%), Gaps = 145/1192 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++SYN F+   L+K   +     V   +DP            + +  +
Sbjct: 156  AFLKTKGLVKQHVDSYNHFVDVELKKIIKA--NRFVRSDFDPK---------FLLEYVDI 204

Query: 92   TLDKPSFFAGNGGDEH--DMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
             +  P+    +  D H   + P   RL++MTY++ + V +   +YT+      +      
Sbjct: 205  RILSPNRQEEDDLDHHRSTITPNECRLRDMTYAAPIVVDI---IYTRGNAKVKR------ 255

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEK 203
                        T I IGR+P+M+KS  C + G          +C  D GGYFI +G EK
Sbjct: 256  ------------TGIRIGRMPIMLKSSKCVLAGKSDREMAVMEECPLDPGGYFITRGQEK 303

Query: 204  VFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLS 263
            V + QEQ+   R+ V ++ G   A  + +   R     V   K      G   L    LS
Sbjct: 304  VILVQEQLNKNRVIVESAKGIMQASVTSSTHERRTKTYVIQKK------GLMFLRHNTLS 357

Query: 264  TEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKY 323
             E+PI     ALGV SDKEI+ ++     D S     FA   +A  + ++      AL+Y
Sbjct: 358  EEVPIVFALKALGVHSDKEILLMV---AGDDSAYQDNFAINFEACAR-EKIHTQEKALEY 413

Query: 324  VDKLIKGTTFPPGES--------TEECMNTYLFP--SLHGT--KQKARFLGYMVKCLLQA 371
            +   ++    P G S          EC++  + P   + GT  + KA ++  M + +L A
Sbjct: 414  IGHRVRLVKKPLGASRMRNYHLEAIECLSNVVLPHVPVEGTNYRPKALYIALMARRVLMA 473

Query: 372  YSGRRKCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKRMAKALQRDLY 420
                +  D+RD   NKRLEL+G++L             + K+ I    K+  +A + D +
Sbjct: 474  MQDPKLVDDRDYVGNKRLELSGQMLSLLFEDHFKRFNHDFKLSIDKVLKKQNRAQEFDAF 533

Query: 421  GDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLR 480
                     + +  S +T G+ RA +TG WS    + +R +G+   L R + +  L  + 
Sbjct: 534  -------THFSVHKSQITMGIERAIATGNWSLKRFKMDR-AGVTHVLSRLSYIAALGMMT 585

Query: 481  RTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLVSTSILEPIFE 539
            R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL + T + +    EP+ +
Sbjct: 586  RISSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTEDDEEPVRK 645

Query: 540  QLFNSGMEKLADDASYSLG--GKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVE 597
             +F  G E +       +   G + V ++G  I V      F++  R+ RR   +     
Sbjct: 646  IIFLLGAEDICSQTGEEIHSEGIYSVCLNGTPIAVTDTPKRFLNSFRKLRRMGRISEFTS 705

Query: 598  IKRDELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHGIIELV 651
            I  +    EV +  D GRI RP++VVEN         +K+L      F+  L  G++E +
Sbjct: 706  IHINHDFCEVHVATDEGRICRPMIVVENQHSKVTSRYLKALRKGTMEFEDFLTRGLVEYL 765

Query: 652  GTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLY 711
             T EE D   A          E+      TH E++   +LG   G+IP+ +H+ + R  Y
Sbjct: 766  DTNEENDTNIALK--------EEDINQHTTHLEIEPFTILGAVAGLIPYPHHNQSPRNTY 817

Query: 712  QSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPEL 771
            Q      QAIG    N   R+DTL + + YPQ+P+ +T   +           +    +L
Sbjct: 818  QCAM-GKQAIGAIAYNQFNRIDTLLYLMVYPQQPMVKTRTIE-----------LTKYDKL 865

Query: 772  YNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDD 831
              GQNA VAV  + GY+ ED+L++N+AS +RG  R + ++ +        ++     + D
Sbjct: 866  PAGQNATVAVMSYSGYDIEDALILNKASCDRGFGRCQVLKKHVTP-----LKTYANGTSD 920

Query: 832  MVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVI---------GKYADSGADHSIKLK 882
             +N G + S+     ++  DG   +GA +++GD  +         G  ++   D   K K
Sbjct: 921  RINAGALNSENPSHQAIGLDGIAQVGARIEAGDAFLLKSIPQDTAGPASNIYKDKPEKYK 980

Query: 883  HTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT 942
              +   V K  ++ N+ G     + +RQ R P LGDKFSS HGQKG  G +  QE+ PF 
Sbjct: 981  MPDCSYVDKACITENEAGTTLIKLLMRQTRRPELGDKFSSRHGQKGTTGLIVQQEDMPFN 1040

Query: 943  IQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAIT 1002
             QGI PDI++NPH FPSR T G+++E   GK       G+  G   Y T F    V+ ++
Sbjct: 1041 DQGINPDIIMNPHGFPSRMTVGKMMELLSGKA------GVLRGTLEYGTAFGGSRVEDMS 1094

Query: 1003 EQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTR 1062
            + L   GFS  G + L  G TGE  +   F GP +YQ+L HM +DK+  R  GP   LTR
Sbjct: 1095 QVLVENGFSYTGKDYLTSGITGEAHQFYTFFGPIYYQKLKHMVQDKMHSRARGPRAILTR 1154

Query: 1063 QPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRV 1122
            QP   R R GG++ GEMERDCLIA+GA+  L ERL   SD++ + +C KC          
Sbjct: 1155 QPTEGRARDGGLRLGEMERDCLIAYGASQLLLERLMISSDAHDVDVCEKC---------- 1204

Query: 1123 VGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMG--ITLKFDTEF 1172
               G+     YC++C+S   I +  +PY AKLL QEL SM   +T+  + EF
Sbjct: 1205 ---GQMGYSGYCKLCESEKAIRRITMPYAAKLLIQELGSMNVKVTIGLEDEF 1253


>gi|409075839|gb|EKM76215.1| hypothetical protein AGABI1DRAFT_122788 [Agaricus bisporus var.
            burnettii JB137-S8]
          Length = 1142

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 373/1189 (31%), Positives = 559/1189 (47%), Gaps = 143/1189 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETI--VEPGYDPSKKGEGEW-RYASMRF 88
            +F    GLV   I+S+N F+   L+    +  +    V+P +         W +Y  +  
Sbjct: 39   AFLKVKGLVKQHIDSFNYFVDVDLKNIVKANNKITSDVDPRF---------WLKYVDINV 89

Query: 89   GQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGR 148
            G    ++          E  + P   RL++ TYS+ + V +Q+              T  
Sbjct: 90   GFPDRNEMETV------EKKVTPHECRLRDTTYSAPIIVTIQY--------------TRG 129

Query: 149  EQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAE 202
            +  +Q+        N+ IGR+P+M++S+ C + G          +C  D GGYF++KG E
Sbjct: 130  KNIVQR--------NVNIGRLPIMLRSNKCVLTGRTEAQLARMSECPLDPGGYFVVKGTE 181

Query: 203  KVFVAQEQICLKRLWVS--NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVY 260
            KV + QEQ+   R+ V   N  G   A  + +    L  +      +   K G   L   
Sbjct: 182  KVILVQEQLSKNRIIVETDNVKGVVQASCTSSTHGGLKSK-----TYVATKKGRIYLRHN 236

Query: 261  FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNA 320
             +  ++PI I   ALGV SDKEI+ L   T  +     I F++  +   K   F + + A
Sbjct: 237  SIHEDLPIVIALKALGVQSDKEILLL---TAGNTEAYKIAFSANLEDAAKLGIFTR-QQA 292

Query: 321  LKY------VDKLIKGTTFPPGESTEECMNTYLFPSLH----GTKQKARFLGYMVKCLLQ 370
            L+Y      V++ + G   P  E   E + T +   +       + KA F+  M + +L 
Sbjct: 293  LEYIGTRVKVNRRVVGPRRPAWEEALEALATIVLAHVPVNGLDLRPKAIFVATMTRRVLM 352

Query: 371  AYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDRTVR 426
            A +     D+RD   NKRLELAG+LL    E   K + ++ +  + K L++     RT  
Sbjct: 353  AMNDENMVDDRDYVGNKRLELAGQLLALLFEDLFKTYNSNLKSAIDKVLKKP---SRTTE 409

Query: 427  PIEY---YLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTR 483
               Y         LT G  RA STG WS    + ER +G+   L R + +  L  + R  
Sbjct: 410  FDAYNTMQFQGDHLTAGFVRAISTGNWSLKRFKMER-AGVTHVLSRLSFISALGMMTRIS 468

Query: 484  QQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLF 542
             Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + E PI +  F
Sbjct: 469  SQFEKTRKVSGPRALQPSQWGVLCPSDTPEGEACGLVKNLALMTHITTDVEEEPIIQLAF 528

Query: 543  NSGME--KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKR 600
              G+E  +LA          F V V+G  IG+ +  + FVS+ R+ RR +     V I  
Sbjct: 529  MLGVEDIRLATGTEIYGPNTFVVNVNGTIIGLIRHPMRFVSQFRKLRRARRFSEFVSIYV 588

Query: 601  DELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNY------TFQALLDHGIIELVGTE 654
            +     V I  D GRI RP+++VE+     + E   Y      TF   L  G++E +   
Sbjct: 589  NHHHRTVHIASDGGRICRPMIIVEHGRSKVTPEHATYLKDGTATFDDFLRKGVVEYLDVN 648

Query: 655  EEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQ 714
            EE D        Y+     D  P   TH E++   LLG   G+IP+ +H+ + R  YQ  
Sbjct: 649  EENDT-------YIALYESDITP-HTTHLEIEPFTLLGAVAGLIPYPHHNQSPRNTYQC- 699

Query: 715  KHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNG 774
                QAIG    N   R+DTL +   YPQ+P+ +T   + +G             +L  G
Sbjct: 700  AMGKQAIGAIGYNQFNRIDTLLYLSVYPQQPMVKTKTIELIG-----------YDKLPAG 748

Query: 775  QNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVN 834
            QNA VAV  + GY+ ED+L++N+ASL+RG  R + +R     +         R +D  V+
Sbjct: 749  QNATVAVMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLIRKYPNGTYDRLADAPVD 808

Query: 835  FGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH--------SIKLKHTE- 885
               + +K  R D +  DG   +G  +  GDI + K + + A          S+  K+T  
Sbjct: 809  ENGMTAK--RYDIIQPDGLAGVGERVDPGDIYVNKQSPTNASDNSFTGQAASVPYKNTPL 866

Query: 886  ------RGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENF 939
                   G + KV+++  ++ +    V +RQ R P LGDKFSS HGQKGV G + +QE+ 
Sbjct: 867  TYKSPVAGYIDKVMVTDTENEQTLIKVLIRQTRRPELGDKFSSRHGQKGVCGLIVNQEDM 926

Query: 940  PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVD 999
            PF  QGI PD ++NPH FPSR T G+++E   GK       G+ +G  +Y T F    V+
Sbjct: 927  PFNDQGINPDTIMNPHGFPSRMTVGKMIELLAGKA------GVLTGKLQYGTAFGGSKVE 980

Query: 1000 AITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHP 1059
             ++  L   GFS  G + L  G TGE + + ++ GP +YQ+L HM  DK+  R  GP   
Sbjct: 981  DMSRILIENGFSYAGKDMLTSGITGEPLEAYVYFGPIYYQKLKHMVMDKMHARARGPRAT 1040

Query: 1060 LTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVI 1119
            LTRQP   R R GG++ GEMERDCLI +GA   L ERL   SD ++++ C++C       
Sbjct: 1041 LTRQPTEGRSREGGLRLGEMERDCLIGYGATQLLLERLMISSDIFEVNACQEC------- 1093

Query: 1120 QRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
                  G      +C  C S   +    +PY AKLL QEL +M +  + 
Sbjct: 1094 ------GLMGYNGWCTYCKSSKKMASLTIPYAAKLLFQELMAMNVVPRL 1136


>gi|407461849|ref|YP_006773166.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrosopumilus
            koreensis AR1]
 gi|407045471|gb|AFS80224.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrosopumilus
            koreensis AR1]
          Length = 1115

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 367/1186 (30%), Positives = 583/1186 (49%), Gaps = 151/1186 (12%)

Query: 38   GLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPS 97
            G+    +NS++EF++ GLQ   +  G+  +E    P K          ++ G+V L +P 
Sbjct: 20   GVARQHLNSFDEFLERGLQSIINEVGQIDIENAEYPYK----------IQLGKVKLQQPR 69

Query: 98   FFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVL 157
                +G   H + P  ARL+N++YS+   V ++  V    ++   +F             
Sbjct: 70   MMELDGSITH-ITPAEARLRNVSYSA--PVMMEASVVEDGKILESRF------------- 113

Query: 158  SDETTNIIIGRIPVMVKSDLCWM------KGVEKGDCDFDHGGYFIIKGAEKVFVAQEQI 211
                  + IG +PVM KS+ C +      K VE G+   D GGYFII G+E+V V  E +
Sbjct: 114  ------VHIGDVPVMAKSNACILHNFSTQKLVEHGEDPNDPGGYFIINGSERVIVGLEDL 167

Query: 212  CLKRLWVS-NSMGWTVAYKSENKRNRLIVRLVDMSKFEDI--KGGEKVLSVYFLSTEIPI 268
               ++ V   ++G  + +K++   + +  R    +K E +    G  V  +     +IP+
Sbjct: 168  SYNKIIVDRETVGGNIVHKAKVYSSIVGYR----AKLELVMKSDGLIVARIPGSPVDIPV 223

Query: 269  WILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLI 328
              L  ALG+ SD+EI   +       S+++ L   +  +  K  +    ++A+ Y+ K I
Sbjct: 224  VTLMRALGLESDREIAAAV-------SLVDELQDELEGSFEKAGDVPTAKDAIVYISKRI 276

Query: 329  KGTTFPPG-------ESTEECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRRK 377
                  PG       +  E  ++  L P L       K+KA+FLG     LL+   G  K
Sbjct: 277  A-----PGMLEEFQIKRAETLLDWGLLPHLGKHPENRKEKAQFLGEAACKLLELKLGWIK 331

Query: 378  CDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASIL 437
             D++D + NK ++ AG++L    +    +  + M   L+R     R +  +   +   I+
Sbjct: 332  PDDKDHYGNKVIKFAGQMLADLFRTAFRNLVRDMKYQLERS-GQKRGINAVAAAIRPGII 390

Query: 438  TNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARY 497
            T+ L+ A +TG W        R+ G+   L R N L T+  LRR +  +  T    +AR 
Sbjct: 391  TDKLNNAIATGNWGR-----GRV-GVTQLLDRTNYLSTISHLRRIQSPLSRTQPNFEARD 444

Query: 498  PHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-LEPIFEQLFNSGMEKLADDASYS 556
             H +H+G+IC   TP+G NCGLVKNL ++G++S ++  E I E+L++ G     D     
Sbjct: 445  LHATHFGRICPSETPEGSNCGLVKNLALSGIISVNVPSEEIVEKLYDLGTVHFFDAKEDL 504

Query: 557  LGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIK--RDELQSEVR---IFM 611
                 ++FVDG  IG  KD       LR  RR  ++   V +   + E++   R   +  
Sbjct: 505  KKDGTRIFVDGKLIGYYKDGEQLAESLRDLRRNSKIHPHVGVSFHKSEIEGSTRRLYVNC 564

Query: 612  DAGRILRPLLVVENMGKIKS------LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGI 665
            +AGR+LRPL+++++   + +      +  K  ++  LL  G++E++   EEE+C      
Sbjct: 565  NAGRVLRPLIIIKDNKPLLTADLLDKISKKLISWTDLLRMGVLEMIDANEEENC------ 618

Query: 666  KYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPT 725
             Y+  D +D K  K TH E+    +LG    IIP+  H+ + R  Y+S   + Q++GF T
Sbjct: 619  -YVTLDEKDTK--KHTHLEVFPPAILGAGASIIPYPEHNQSPRNTYESA-MAKQSLGFST 674

Query: 726  TNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHL 785
               +       H + YPQ P+  T     LG        +  RP    GQN +VAV    
Sbjct: 675  PMMNTSTYVRQHFMLYPQVPIVNTKAMKLLG--------LEDRPA---GQNCVVAVLPFD 723

Query: 786  GYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF-----GKIQS 840
            GYN ED++V+++AS++RG+ R+   R Y AE   K+     R + ++ N      G    
Sbjct: 724  GYNIEDAIVLSKASVDRGLGRTFFYRIYDAEA--KQYPGGMRDAFEIPNAEDNIRGYKGE 781

Query: 841  KIGRVDSLDDDGFPFIGANLQSGDIVIGK------------YADSGA---DHSIKLKHTE 885
            +  R+  L++DG     A ++ GDI+IGK            +  SG    D SI ++ +E
Sbjct: 782  RAYRL--LEEDGVVAAEAPVKGGDILIGKTSPPRFMEEYREFESSGPYRRDTSIGVRPSE 839

Query: 886  RGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQG 945
             G+V  VV++ +++G     +  R +R P +GDKF+S HGQKG+LG L   E+ P+T  G
Sbjct: 840  TGVVDTVVMTQSNEGGKMYKIRARDMRIPEIGDKFASRHGQKGILGILAKAEDLPYTASG 899

Query: 946  IVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRY-ATPFATPSVDAITEQ 1004
            + PD++INPHAFPSR T G ++E+  GK  A  GK       R+  + F    +D + E 
Sbjct: 900  MSPDVLINPHAFPSRMTVGMMMESICGKSAALRGK-------RFDGSAFVGEKMDEVREV 952

Query: 1005 LHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQP 1064
            +   GF   G E +YDGRTG+     +FIG  +YQ+L HM  DK+  R  G V  LT+QP
Sbjct: 953  MDAHGFEYSGKEIMYDGRTGKSFPVEVFIGVVYYQKLHHMVADKIHARARGQVQMLTKQP 1012

Query: 1065 VADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVA--NVIQRV 1122
               R R GG++FGEMERDCLIA+GA+  L +RL   SD   + +C +C  VA  +V QR 
Sbjct: 1013 TEGRARGGGLRFGEMERDCLIAYGASMILKDRLLDESDKSDIFVCERCGLVAYHDVKQRK 1072

Query: 1123 VGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
                       CR+C     +   +V Y  KLL QE+ S+ +  + 
Sbjct: 1073 Y---------VCRVCGDKAKVSSVSVAYAFKLLLQEMQSLNVAPRL 1109


>gi|329765755|ref|ZP_08257324.1| DNA-directed RNA polymerase subunit beta [Candidatus Nitrosoarchaeum
            limnia SFB1]
 gi|329137821|gb|EGG42088.1| DNA-directed RNA polymerase subunit beta [Candidatus Nitrosoarchaeum
            limnia SFB1]
          Length = 1115

 Score =  497 bits (1280), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 371/1185 (31%), Positives = 579/1185 (48%), Gaps = 149/1185 (12%)

Query: 38   GLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPS 97
            G+    +NS++EF++ GLQ   +  G+  +E    P K          ++ G+V L +P 
Sbjct: 20   GIARQHLNSFDEFLERGLQSIINEVGQIEIENAEYPYK----------IQLGKVKLQQPR 69

Query: 98   FFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVL 157
                +G   H + P  ARL+N++YS+   V ++  V    ++   +F             
Sbjct: 70   MMELDGSITH-ITPAEARLRNVSYSA--PVMMEASVVEDGKILESRF------------- 113

Query: 158  SDETTNIIIGRIPVMVKSDLCWM------KGVEKGDCDFDHGGYFIIKGAEKVFVAQEQI 211
                  + IG +PVM KS+ C +      K +E G+   D GGYFII G+E+V V  E +
Sbjct: 114  ------VHIGDVPVMAKSNACILHNFSTQKLIEHGEDPNDPGGYFIINGSERVIVGLEDL 167

Query: 212  CLKRLWVS-NSMGWTVAYKSENKRNRLIVRLVDMSKFEDI--KGGEKVLSVYFLSTEIPI 268
               ++ V   S+G    +K++   + +  R    +K E +    G  V  +     +IP+
Sbjct: 168  SYNKIIVDRESVGGNTVFKAKVYSSIVGYR----AKLELVMKNDGLIVARIPGSPVDIPV 223

Query: 269  WILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLI 328
              L  ALG+ SD+EI   +    E   I N L  S      K  +    ++A+ Y+ K I
Sbjct: 224  VTLTRALGLESDREIAAAVSLVDE---IQNELEGSFE----KAGDVPTAKDAIVYISKRI 276

Query: 329  KGTTFPPG-------ESTEECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRRK 377
                  PG       +  E  ++  L P L       K+KA+FLG     LL+   G   
Sbjct: 277  A-----PGMLEEFQIKRAETLLDWGLLPHLGKHPENRKEKAQFLGEAACKLLELKLGWIS 331

Query: 378  CDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASIL 437
             D++D + NK ++ AG++L    +    +  + M   L+R     R +  +   +   I+
Sbjct: 332  PDDKDHYGNKVIKFAGQMLADLFRTAFRNLVRDMKYQLERS-GQKRGINAVSAAIRPGII 390

Query: 438  TNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARY 497
            T+ L+ A +TG W        R+ G+   L R N L T+  LRR +  +  T    +AR 
Sbjct: 391  TDKLNNAIATGNWGR-----GRV-GVTQLLDRTNYLSTISHLRRIQSPLSRTQPNFEARD 444

Query: 498  PHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-LEPIFEQLFNSGMEKLADDASYS 556
             H +H+G+IC   TP+G NCGLVKNL ++G++S ++  E I E+L++ G     D     
Sbjct: 445  LHATHFGRICPSETPEGSNCGLVKNLALSGIISVNVPSEEIVEKLYDLGTIHFFDAKEDV 504

Query: 557  LGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIK--RDELQ-SEVRIFMD- 612
                 ++FVDG  IG  KD       LR  RR  ++   V I   + E++ S  R++++ 
Sbjct: 505  KKDGARIFVDGRLIGYYKDGAQLAESLRDLRRNSKIHPHVGISFHKSEIEGSTKRLYVNC 564

Query: 613  -AGRILRPLLVVENMGKIKS------LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGI 665
             AGR+LRPL+++++   + +      +  K  ++  LL  G++E++   EEE+C      
Sbjct: 565  NAGRVLRPLIIIKDNKPLLTQDLLDKISKKLLSWTDLLRMGVLEMIDANEEENC------ 618

Query: 666  KYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPT 725
             Y+  D +D K  K TH E+    +LG    IIP+  H+ + R  Y+S   + Q++GF T
Sbjct: 619  -YITLDEKDTK--KHTHLEVFPPAILGAGASIIPYPEHNQSPRNTYESA-MAKQSLGFST 674

Query: 726  TNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHL 785
               +       H + YPQ P+  T     LG        +  RP    GQN +VAV    
Sbjct: 675  PMMNTSTYVRQHLMLYPQTPIVNTKAMKLLG--------LEDRPA---GQNCVVAVLPFD 723

Query: 786  GYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF-----GKIQS 840
            GYN ED++V++RAS++RG+ R+   R Y AE   K+     R + ++ N      G    
Sbjct: 724  GYNIEDAIVLSRASVDRGLGRTFFFRIYDAEA--KQYPGGMRDTFEIPNAEDNIRGYKGE 781

Query: 841  KIGRVDSLDDDGFPFIGANLQSGDIVIGK------------YADSGA---DHSIKLKHTE 885
            K  R+  L++DG     + +  GDI+IGK            +  SG    D SI ++ +E
Sbjct: 782  KAYRL--LEEDGVVASESPVHGGDILIGKTSPPRFMEEYREFESSGPYRRDTSIGVRPSE 839

Query: 886  RGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQG 945
             G+V  VV++ +++G     + +R +R P +GDKF+S HGQKGVLG L   E+ P+T  G
Sbjct: 840  TGVVDTVVMTQSNEGGKMYKIRVRDMRIPEIGDKFASRHGQKGVLGILAKAEDLPYTADG 899

Query: 946  IVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQL 1005
            I PD++INPHAFPSR T G  +E+  GK  A        G +   + F    ++ +   +
Sbjct: 900  ISPDVLINPHAFPSRMTVGMFMESICGKAAA------LRGSQFDGSAFVGEKMEEVKPVM 953

Query: 1006 HRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPV 1065
              AGF   G E +YDGRTG+     +FIG  +YQ+L HM  DK+  R  G V  LT+QP 
Sbjct: 954  DAAGFKYSGKETMYDGRTGKSFPVEVFIGVVYYQKLHHMVADKIHARARGQVQMLTKQPT 1013

Query: 1066 ADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVA--NVIQRVV 1123
              R R GG++FGEMERDCLIA+GA+  L +RL   SD   + +C +C  VA  +V QR  
Sbjct: 1014 EGRARGGGLRFGEMERDCLIAYGASMILKDRLLDESDKSDIFVCERCGLVAYHDVKQRKY 1073

Query: 1124 GGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
                      CR+C     +   +V Y  KLL QE+ S+ +  + 
Sbjct: 1074 ---------VCRVCGDKAKVSSVSVAYAFKLLLQEMQSLNVAPRL 1109


>gi|167044136|gb|ABZ08819.1| putative RNA polymerase Rpb2, domain 6 [uncultured marine
            crenarchaeote HF4000_APKG5C13]
          Length = 1114

 Score =  497 bits (1280), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 370/1189 (31%), Positives = 580/1189 (48%), Gaps = 158/1189 (13%)

Query: 38   GLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPS 97
            G+    + S+NEF+  GLQ+  +      +E           E+ Y  ++ G++   +P 
Sbjct: 20   GIARQHLTSFNEFLTKGLQEIINEIDHIDIE---------NAEYPY-RIKLGRIQFKQPR 69

Query: 98   FFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVL 157
                +G   H + P  ARL+N++Y + + ++    V    +   ++F             
Sbjct: 70   MMELDGSVTH-ITPAEARLRNVSYVAPLMLEAS--VIEDGKTLENRF------------- 113

Query: 158  SDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQI 211
                  + IG IP+MVKS+ C ++       ++  +  +D GGYFII G+E+V V  E +
Sbjct: 114  ------LHIGDIPIMVKSEGCILRNFSEQKLIDHAEDPYDPGGYFIINGSERVIVGLEDL 167

Query: 212  CLKRLWV-SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDI--KGGEKVLSVYFLSTEIPI 268
               ++ V ++ +G    +K++   + +  R    +K E +  + G  V  +     +IPI
Sbjct: 168  SYNKIIVDADKIGGKKVFKAKIYSSIVGYR----AKLELVLKEDGLIVARIPGSPVDIPI 223

Query: 269  WILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLI 328
              L  ALG+ SDKEI + I     +  I N L  S         E    ++A++Y+ K I
Sbjct: 224  ITLVRALGLESDKEIASAISL---NDKIQNELEGSFEKT-----EISTPKDAIEYISKRI 275

Query: 329  KGTTFPPG-------ESTEECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRRK 377
                  PG       +  E  ++  L P L       K+K +FLG     LL+   G  +
Sbjct: 276  A-----PGMLEEFQIKRAETLLDWGLLPHLGKQPENRKEKIQFLGEAACKLLELKLGWIQ 330

Query: 378  CDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASIL 437
             D++D + NK ++ AG++L    +    +  + M   L+R     R +  +   +   I+
Sbjct: 331  PDDKDHYGNKVVKFAGQMLADLFRTAFRNLVRDMKYQLERS-GQKRGINAVSAAIRPGII 389

Query: 438  TNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARY 497
            ++ L+ A +TG W        R+ G+   L R N L T+  LRR +  +  T    +AR 
Sbjct: 390  SDKLNNAIATGNWGRG-----RV-GVTQLLDRTNYLSTISHLRRVQSPLSRTQPNFEARD 443

Query: 498  PHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-LEPIFEQLFNSGMEKLADDASYS 556
             H +H+G+IC   TP+G NCGLVKNL ++ ++S S+  E I E+++  G E   D     
Sbjct: 444  LHSTHFGRICPSETPEGSNCGLVKNLALSAIISVSVPSEEIIEKMYEIGTEYFTDVKDSV 503

Query: 557  LGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEI-----KRDELQSEVRIFM 611
                 +VFVDG  IG  KD     S LR  RR  ++   + I     +++     + +  
Sbjct: 504  KKDGTRVFVDGKLIGYHKDGKKLASSLRELRRSSKIHPHIGISIHIPEQEGATKRLYVNC 563

Query: 612  DAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWG 664
            +AGR+LR L+VV++ GK       +  +  K  ++  L+  G+IEL+   EEE+C   + 
Sbjct: 564  NAGRVLRSLIVVKD-GKSTLTPDLLDKILKKLVSWNDLVRMGVIELIDANEEENCFITF- 621

Query: 665  IKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFP 724
                    +DK   K TH E+  S +LG    IIP+  H+ + R  Y+S   + Q++GF 
Sbjct: 622  --------DDKHVKKHTHTEIFPSAILGAGASIIPYPEHNQSPRNTYESA-MAKQSLGFS 672

Query: 725  TTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVH 784
            T   +       H + YPQ P+  T     LG        +  RP    GQN +VAV   
Sbjct: 673  TPMMNTSTYVRQHTMLYPQTPIVTTRAMGLLG--------LEKRPA---GQNCVVAVLPF 721

Query: 785  LGYNQEDSLVMNRASLERGMFRSEHIRSYKAEV--------DNKEMQVKRRSSDDMVNFG 836
             GYN ED++V++++++ERG+ R+   R Y+AE         DN E+     ++DD +  G
Sbjct: 722  DGYNIEDAIVLSKSAIERGLGRTLFYRIYEAESKQYPGGMRDNFEIP----NADDNLR-G 776

Query: 837  KIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD------------SGA---DHSIKL 881
                K  R+  L+DDG     + +  GDI+IGK +             SG    D SI +
Sbjct: 777  YKGEKSYRL--LEDDGIVASESRVSGGDILIGKTSPPRFMEEYHELEGSGPYRRDTSIGV 834

Query: 882  KHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPF 941
            + +E G+V  ++L+ + +G     V +R +R P +GDKF+S HGQKGV+G L   E+ P+
Sbjct: 835  RPSETGVVDTIILTQSAEGGKMFKVRIRDMRLPEIGDKFASRHGQKGVVGLLAKAEDLPY 894

Query: 942  TIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAI 1001
            T  GI PD++INPHAFPSR T G +LE+  GK  A  G+      K  A+ F    VD +
Sbjct: 895  TADGISPDVLINPHAFPSRMTVGMMLESITGKAAAMRGR------KVDASAFVGEKVDEV 948

Query: 1002 TEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLT 1061
               L  AGF   G E +YDGRTG+     +FIG  +YQ+L HM  DK+  R  G V  LT
Sbjct: 949  KSVLEDAGFKYSGKEIMYDGRTGKQFPVEVFIGVVYYQKLHHMVADKIHARARGQVQMLT 1008

Query: 1062 RQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVA--NVI 1119
            +QP   R R GG++FGEMERDC+IA+GA+  L +RL   SD   + +C +C  VA  ++ 
Sbjct: 1009 KQPTEGRARGGGLRFGEMERDCIIAYGASMILKDRLLDESDKSDIFVCERCGLVAYHDIK 1068

Query: 1120 QRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
            QR           YCR+CD    +   +V Y  KLL QE+  + I  + 
Sbjct: 1069 QRRF---------YCRVCDKKGKVSSVSVAYAFKLLLQEMSCLNIAPRL 1108


>gi|393794931|ref|ZP_10378295.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrosoarchaeum
            limnia BG20]
          Length = 1115

 Score =  497 bits (1279), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 371/1185 (31%), Positives = 579/1185 (48%), Gaps = 149/1185 (12%)

Query: 38   GLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPS 97
            G+    +NS++EF++ GLQ   +  G+  +E    P K          ++ G+V L +P 
Sbjct: 20   GIARQHLNSFDEFLERGLQSIINEVGQIEIENAEYPYK----------IQLGKVKLQQPR 69

Query: 98   FFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVL 157
                +G   H + P  ARL+N++YS+   V ++  V    ++   +F             
Sbjct: 70   MMELDGSITH-ITPAEARLRNVSYSA--PVMMEASVVEDGKILESRF------------- 113

Query: 158  SDETTNIIIGRIPVMVKSDLCWM------KGVEKGDCDFDHGGYFIIKGAEKVFVAQEQI 211
                  + IG +PVM KS+ C +      K +E G+   D GGYFII G+E+V V  E +
Sbjct: 114  ------VHIGDVPVMAKSNACILHNFSTQKLIEHGEDPNDPGGYFIINGSERVIVGLEDL 167

Query: 212  CLKRLWVS-NSMGWTVAYKSENKRNRLIVRLVDMSKFEDI--KGGEKVLSVYFLSTEIPI 268
               ++ V   S+G    +K++   + +  R    +K E +    G  V  +     +IP+
Sbjct: 168  SYNKIIVDRESVGGNTVFKAKVYSSIVGYR----AKLELVMKNDGLIVARIPGSPVDIPV 223

Query: 269  WILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLI 328
              L  ALG+ SD+EI   +    E   I N L  S      K  +    ++A+ Y+ K I
Sbjct: 224  VTLTRALGLESDREIAAAVSLVDE---IQNELEGSFE----KAGDVPTAKDAIVYISKRI 276

Query: 329  KGTTFPPG-------ESTEECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRRK 377
                  PG       +  E  ++  L P L       K+KA+FLG     LL+   G   
Sbjct: 277  A-----PGMLEEFQIKRAETLLDWGLLPHLGKHPENRKEKAQFLGEAACKLLELKLGWIS 331

Query: 378  CDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASIL 437
             D++D + NK ++ AG++L    +    +  + M   L+R     R +  +   +   I+
Sbjct: 332  PDDKDHYGNKVIKFAGQMLADLFRTAFRNLVRDMKYQLERS-GQKRGINAVAAAIRPGII 390

Query: 438  TNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARY 497
            T+ L+ A +TG W        R+ G+   L R N L T+  LRR +  +  T    +AR 
Sbjct: 391  TDKLNNAIATGNWGR-----GRV-GVTQLLDRTNYLSTISHLRRIQSPLSRTQPNFEARD 444

Query: 498  PHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-LEPIFEQLFNSGMEKLADDASYS 556
             H +H+G+IC   TP+G NCGLVKNL ++G++S ++  E I E+L++ G     D     
Sbjct: 445  LHATHFGRICPSETPEGSNCGLVKNLALSGIISVNVPSEEIVEKLYDLGTIHFFDAKEDV 504

Query: 557  LGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIK--RDELQ-SEVRIFMD- 612
                 ++FVDG  IG  KD       LR  RR  ++   V I   + E++ S  R++++ 
Sbjct: 505  KKDGARIFVDGRLIGYYKDGAQLAESLRDLRRNSKIHPHVGISFHKSEIEGSTKRLYVNC 564

Query: 613  -AGRILRPLLVVENMGKIKS------LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGI 665
             AGR+LRPL+++++   + +      +  K  ++  LL  G++E++   EEE+C      
Sbjct: 565  NAGRVLRPLIIIKDNKPLLTQDLLDKISKKLLSWTDLLRMGVLEMIDANEEENC------ 618

Query: 666  KYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPT 725
             Y+  D +D K  K TH E+    +LG    IIP+  H+ + R  Y+S   + Q++GF T
Sbjct: 619  -YITLDEKDTK--KHTHLEVFPPAILGAGASIIPYPEHNQSPRNTYESA-MAKQSLGFST 674

Query: 726  TNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHL 785
               +       H + YPQ P+  T     LG        +  RP    GQN +VAV    
Sbjct: 675  PMMNTSTYVRQHLMLYPQTPIVNTKAMKLLG--------LEDRPA---GQNCVVAVLPFD 723

Query: 786  GYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF-----GKIQS 840
            GYN ED++V++RAS++RG+ R+   R Y AE   K+     R + ++ N      G    
Sbjct: 724  GYNIEDAIVLSRASVDRGLGRTFFFRIYDAEA--KQYPGGMRDTFEIPNAEDNIRGYKGE 781

Query: 841  KIGRVDSLDDDGFPFIGANLQSGDIVIGK------------YADSGA---DHSIKLKHTE 885
            K  R+  L++DG     + +  GDI+IGK            +  SG    D SI ++ +E
Sbjct: 782  KAYRL--LEEDGVVASESPVHGGDILIGKTSPPRFMEEYREFESSGPYRRDTSIGVRPSE 839

Query: 886  RGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQG 945
             G+V  VV++ +++G     + +R +R P +GDKF+S HGQKGVLG L   E+ P+T  G
Sbjct: 840  TGVVDTVVMTQSNEGGKMYKIRVRDMRIPEIGDKFASRHGQKGVLGILAKAEDLPYTADG 899

Query: 946  IVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQL 1005
            I PD++INPHAFPSR T G  +E+  GK  A        G +   + F    ++ +   +
Sbjct: 900  ISPDVLINPHAFPSRMTVGMFMESICGKAAA------LRGSQFDGSAFVGEKMEEVKPVM 953

Query: 1006 HRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPV 1065
              AGF   G E +YDGRTG+     +FIG  +YQ+L HM  DK+  R  G V  LT+QP 
Sbjct: 954  DAAGFKYSGKETMYDGRTGKSFPVEVFIGVVYYQKLHHMVADKIHARARGQVQMLTKQPT 1013

Query: 1066 ADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVA--NVIQRVV 1123
              R R GG++FGEMERDCLIA+GA+  L +RL   SD   + +C +C  VA  +V QR  
Sbjct: 1014 EGRARGGGLRFGEMERDCLIAYGASMILKDRLLDESDKSDIFVCERCGLVAYHDVKQRKY 1073

Query: 1124 GGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
                      CR+C     +   +V Y  KLL QE+ S+ +  + 
Sbjct: 1074 ---------VCRVCGDKAKVSSVSVAYAFKLLLQEMQSLNVAPRL 1109


>gi|426193713|gb|EKV43646.1| hypothetical protein AGABI2DRAFT_188003 [Agaricus bisporus var.
            bisporus H97]
          Length = 1142

 Score =  497 bits (1279), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 373/1190 (31%), Positives = 561/1190 (47%), Gaps = 145/1190 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETI--VEPGYDPSKKGEGEW-RYASMRF 88
            +F    GLV   I+S+N F+   L+    +  +    V+P +         W +Y  +  
Sbjct: 39   AFLKVKGLVKQHIDSFNYFVDVDLKNIVKANNKITSDVDPRF---------WLKYVDINV 89

Query: 89   GQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGR 148
            G    ++          E  + P   RL++ TYS+ + V +Q+              T  
Sbjct: 90   GFPDRNEMETV------EKKVTPHECRLRDTTYSAPIIVTIQY--------------TRG 129

Query: 149  EQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAE 202
            +  +Q+        N+ IGR+P+M++S+ C + G          +C  D GGYF++KG E
Sbjct: 130  KNIVQR--------NVNIGRLPIMLRSNKCVLTGRTEAQLARMSECPLDPGGYFVVKGTE 181

Query: 203  KVFVAQEQICLKRLWVS--NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVY 260
            KV + QEQ+   R+ V   N  G   A  + +    L  +      +   K G   L   
Sbjct: 182  KVILVQEQLSKNRIIVETDNVKGVVQASCTSSTHGGLKSK-----TYVATKKGRIYLRHN 236

Query: 261  FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNA 320
             +  ++PI I   ALGV SDKEI+ L   T  +     I F++  +   K   F + + A
Sbjct: 237  SIHEDLPIVIALKALGVQSDKEILLL---TAGNTEAYKIAFSANLEDAAKLGIFTR-QQA 292

Query: 321  LKY------VDKLIKGTTFPPGESTEECMNTYLFPSLH----GTKQKARFLGYMVKCLLQ 370
            L+Y      V++ + G   P  E   E + T +   +       + KA F+  M + +L 
Sbjct: 293  LEYIGTRVKVNRRVVGPRRPAWEEALEALATIVLAHVPVNGLDLRPKAIFVATMTRRVLM 352

Query: 371  AYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDRTVR 426
            A +     D+RD   NKRLELAG+LL    E   K + ++ +  + K L++     RT  
Sbjct: 353  AMNDENMVDDRDYVGNKRLELAGQLLALLFEDLFKTYNSNLKSAIDKVLKKP---SRTTE 409

Query: 427  PIEY---YLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTR 483
               Y         LT G  RA STG WS    + ER +G+   L R + +  L  + R  
Sbjct: 410  FDAYNTMQFQGDHLTAGFVRAISTGNWSLKRFKMER-AGVTHVLSRLSFISALGMMTRIS 468

Query: 484  QQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLF 542
             Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + E PI +  F
Sbjct: 469  SQFEKTRKVSGPRALQPSQWGVLCPSDTPEGEACGLVKNLALMTHITTDVEEEPIIQLAF 528

Query: 543  NSGME--KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKR 600
              G+E  +LA          F V V+G  IG+ +  + FVS+ R+ RR +     V I  
Sbjct: 529  MLGVEDIRLATGTEIYGPNTFVVNVNGTIIGLTRHPMRFVSQFRKLRRARRFSEFVSIYV 588

Query: 601  DELQSEVRIFMDAGRILRPLLVVENMGKIK-------SLEGKNYTFQALLDHGIIELVGT 653
            +     V I  D GRI RP+++VE+ G+ K        L+    TF   L  G++E +  
Sbjct: 589  NHHHRTVHIASDGGRICRPMIIVEH-GRSKVTPEHATHLKDGTATFDDFLRKGVVEYLDV 647

Query: 654  EEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQS 713
             EE D        Y+     D  P   TH E++   LLG   G+IP+ +H+ + R  YQ 
Sbjct: 648  NEENDT-------YIALYESDITP-HTTHLEIEPFTLLGAVAGLIPYPHHNQSPRNTYQC 699

Query: 714  QKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYN 773
                 QAIG    N   R+DTL +   YPQ+P+ +T   + +G             +L  
Sbjct: 700  -AMGKQAIGAIGYNQFNRIDTLLYLSVYPQQPMVKTKTIELIG-----------YDKLPA 747

Query: 774  GQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMV 833
            GQNA VAV  + GY+ ED+L++N+ASL+RG  R + +R     +         R +D  +
Sbjct: 748  GQNATVAVMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLIRKYPNGTYDRLADAPI 807

Query: 834  NFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH--------SIKLKHTE 885
            +   + +K  R D +  DG   +G  +  GDI + K + + A          S+  K+T 
Sbjct: 808  DENGMTAK--RYDIIQPDGLAGVGERVDPGDIYVNKQSPTNASDNSFTGQAASVPYKNTP 865

Query: 886  -------RGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQEN 938
                    G + KV+++  ++ +    V +RQ R P LGDKFSS HGQKGV G + +QE+
Sbjct: 866  LTYKSPVAGYIDKVMVTDTENEQTLIKVLIRQTRRPELGDKFSSRHGQKGVCGLIVNQED 925

Query: 939  FPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSV 998
             PF  QGI PD ++NPH FPSR T G+++E   GK       G+ +G  +Y T F    V
Sbjct: 926  MPFNDQGINPDTIMNPHGFPSRMTVGKMIELLAGKA------GVLTGKLQYGTAFGGSKV 979

Query: 999  DAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVH 1058
            + ++  L   GFS  G + L  G TGE + + ++ GP +YQ+L HM  DK+  R  GP  
Sbjct: 980  EDMSRILIENGFSYAGKDMLTSGITGEPLEAYVYFGPIYYQKLKHMVMDKMHARARGPRA 1039

Query: 1059 PLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANV 1118
             LTRQP   R R GG++ GEMERDCLI +GA   L ERL   SD ++++ C++C      
Sbjct: 1040 TLTRQPTEGRSREGGLRLGEMERDCLIGYGATQLLLERLMISSDIFEVNACQEC------ 1093

Query: 1119 IQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
                   G      +C  C S   +    +PY AKLL QEL +M +  + 
Sbjct: 1094 -------GLMGYNGWCTYCKSSKKMASLTIPYAAKLLFQELMAMNVVPRL 1136


>gi|118576748|ref|YP_876491.1| DNA-directed RNA polymerase, beta subunit/140 kD subunit [Cenarchaeum
            symbiosum A]
 gi|118195269|gb|ABK78187.1| DNA-directed RNA polymerase, beta subunit/140 kD subunit [Cenarchaeum
            symbiosum A]
          Length = 1115

 Score =  497 bits (1279), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 365/1189 (30%), Positives = 581/1189 (48%), Gaps = 157/1189 (13%)

Query: 38   GLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPS 97
            G+    +NS++EF++ GLQ   D  G+  +E    P K          ++ G+V L KP 
Sbjct: 20   GIARQHLNSFDEFLERGLQSIIDEQGQIEIENAEYPYK----------IQLGKVKLQKPR 69

Query: 98   FFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVL 157
                +G   + + P   RL+N++YS+   V ++  V    +    KF             
Sbjct: 70   MMELDGSITY-ITPAEGRLRNVSYSA--PVMMEASVVEDGKTLESKF------------- 113

Query: 158  SDETTNIIIGRIPVMVKSDLCWM------KGVEKGDCDFDHGGYFIIKGAEKVFVAQEQI 211
                  + IG IP M+KS  C +      K +E+G+   D GGYFII G+E+V V  E +
Sbjct: 114  ------VHIGDIPTMIKSSACVLHNLPDQKLIEQGEDPNDPGGYFIINGSERVVVGLEDL 167

Query: 212  CLKRLWV-SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLST--EIPI 268
               ++ V   ++G    YK++   + +  R    +K E I   + ++ V    +  +IP+
Sbjct: 168  SYNKIIVDKETVGGNPVYKAKVYSSIVGYR----AKLELIMKNDGLIVVRIPGSPVDIPV 223

Query: 269  WILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLI 328
              L  ALG+ SD+EI +         S+ + +   +  +  K  E +  ++A+ Y+ K I
Sbjct: 224  VTLMKALGLESDREIAS-------SASLNDDIQNELEGSFEKAGEVKTSKDAIVYISKRI 276

Query: 329  KGTTFPPG-------ESTEECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRRK 377
                  PG       +  E  ++  L P L       K+KA+FLG     LL+       
Sbjct: 277  A-----PGMLEEFQIKRAETLLDWSLLPHLGKHPENRKEKAQFLGEATCKLLELKLVWIP 331

Query: 378  CDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASIL 437
             D++D + NK ++ AG++L    +    +  + M   L+R     R +  +   +   I+
Sbjct: 332  ADDKDHYGNKVIKFAGQMLADLFRTAFRNLVRDMKYQLERS-GQKRGIHAVAAAIRPGIV 390

Query: 438  TNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARY 497
            T+ L+ A +TG W        R+ G+   L R N L T+  LRR +  +  T    +AR 
Sbjct: 391  TDKLNNAIATGNWGR-----GRV-GVTQLLDRTNYLSTISHLRRVQSPLSRTQPNFEARD 444

Query: 498  PHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-LEPIFEQLFNSGMEKLADDASYS 556
             H +H+G+IC   TP+G NCGLVKNL ++ ++S  +  + I E+LF+ G     D    +
Sbjct: 445  LHATHFGRICPSETPEGSNCGLVKNLALSAIISVHVPSQEITEKLFDMGTVHFTDAKEDA 504

Query: 557  LGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEI---KRDELQSEVRIFMD- 612
                 ++FVDG  IG  KD       LR  RR  ++   V I   +  E  +  R++++ 
Sbjct: 505  RATGTRIFVDGRLIGYYKDGGGLADSLRDLRRSSKIHPHVSISFNRPAEDGATRRLYVNC 564

Query: 613  -AGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWG 664
             AGR+LRP++++++ GK       +  +  K  ++  LL  G+IEL+   EEE+C     
Sbjct: 565  SAGRVLRPMIIIKD-GKPLLTQDLLDKISSKLLSWNDLLRMGVIELIDANEEENCYVT-- 621

Query: 665  IKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFP 724
                   +++K+    TH E+  S +LG    IIP+  H+ + R  Y+S   + Q++GF 
Sbjct: 622  -------LDEKEAKGHTHLEIFPSAILGAGASIIPYPEHNQSPRNTYESA-MAKQSLGFS 673

Query: 725  TTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVH 784
            T   +       H + YPQ P+  T     LG        +  RP    GQN +VAV   
Sbjct: 674  TPMMNTSTYVRQHFMLYPQTPIVNTRAMGLLG--------LEDRPA---GQNCVVAVLPF 722

Query: 785  LGYNQEDSLVMNRASLERGMFRSEHIRSYKAEV--------DNKEMQVKRRSSDDMVNFG 836
             GYN ED++V++++S++RG+ R+   R Y AE         DN E+      ++D +  G
Sbjct: 723  DGYNIEDAIVLSKSSVDRGLARTFFYRIYDAEAKQYPGGMRDNFEIP----GAEDNIR-G 777

Query: 837  KIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGK------------YADSGA---DHSIKL 881
                K  R+  L+DDG     + +  GDI+IGK            +  SG    D SI +
Sbjct: 778  YKGEKSYRL--LEDDGVIASESTVLGGDILIGKTSPPRFMEEYKEFEPSGPYRRDTSIGV 835

Query: 882  KHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPF 941
            + +E G+V  VV++ +++G     + +R +R P +GDKF++ HGQKGVLG L   E+ P+
Sbjct: 836  RPSETGVVDTVVMTQSNEGGKMYKIRVRDMRVPEIGDKFAARHGQKGVLGILAKNEDLPY 895

Query: 942  TIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAI 1001
            T +G+ PD++INPHAFPSR T G  +E+  GK  A        G +   + F    ++ +
Sbjct: 896  TAEGVTPDVLINPHAFPSRMTVGMFMESITGKAAA------LRGTQFDGSAFVGEKMEEV 949

Query: 1002 TEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLT 1061
             E +  AGF   G E +YDGRTG+     +FIG  +YQ+L HM  DK+  R  G V  LT
Sbjct: 950  REVMDTAGFKYSGKEIMYDGRTGKAFPVEVFIGVVYYQKLHHMVADKIHARARGQVQMLT 1009

Query: 1062 RQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVA--NVI 1119
            +QP   R R GG++FGEMERDCLIA+GA+  L +RL   SD   +++C +C  VA  +V 
Sbjct: 1010 KQPTEGRARGGGLRFGEMERDCLIAYGASMILKDRLLDESDKSDIYVCERCGLVAYHDVK 1069

Query: 1120 QRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
            QR            CR+C     +   +V Y  KLL QE+ S+ +  + 
Sbjct: 1070 QRKY---------VCRVCGDKAKVSSVSVAYAFKLLLQEMQSLNVAPRL 1109


>gi|299741189|ref|XP_001834288.2| DNA-directed RNA polymerase [Coprinopsis cinerea okayama7#130]
 gi|298404597|gb|EAU87529.2| DNA-directed RNA polymerase [Coprinopsis cinerea okayama7#130]
          Length = 1149

 Score =  497 bits (1279), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 370/1195 (30%), Positives = 559/1195 (46%), Gaps = 146/1195 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETI--VEPGYDPSKKGEGEWRYASMRFG 89
            +F    GLV   I+S+N F+   ++    +  +    V+P +         W    +++ 
Sbjct: 38   AFLKVKGLVKQHIDSFNYFVDVDIKNIVKANNKVTSDVDPRF---------W----LKYT 84

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
             + +  P        D+  + P   RL++ TYS+ + V +Q+              T  +
Sbjct: 85   DINVGFPDRNEMEAIDKR-VTPHECRLRDTTYSAPIIVTIQY--------------TRGK 129

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG------DCDFDHGGYFIIKGAEK 203
              +Q+        N+ IGR+P+M++S+ C + G  +       +C  D GGYF++KG EK
Sbjct: 130  SIVQR--------NVNIGRLPIMLRSNKCVLTGKTEAQLARMTECPLDPGGYFVVKGTEK 181

Query: 204  VFVAQEQICLKRLWVS--NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYF 261
            V + QEQ+   R+ V   N  G   A  + +    L  +   ++K      G   L    
Sbjct: 182  VILVQEQLSKNRIIVETDNVKGIVQASCTSSTHGGLKSKTYVITK-----KGRIYLRHNS 236

Query: 262  LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNAL 321
            +  ++PI I   ALG+ SDKEI+ L     E+     I  A+I DA  K   F +   AL
Sbjct: 237  IHEDVPIVIALKALGIQSDKEILLLTAGNTEEYK--TIFSANIEDA-AKLGIFTR-HQAL 292

Query: 322  KY------VDKLIKGTTFPPGESTEECMNTYLFP--SLHGT--KQKARFLGYMVKCLLQA 371
            +Y      V++ + G   P  E   E + T +     + G   + KA F+  M + +L A
Sbjct: 293  EYIGARVKVNRKVMGPRRPAWEEALEALATIVLAHVPVQGLDFRAKAIFVATMTRRVLMA 352

Query: 372  YSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDRTVRP 427
                   D+RD   NKRLELAG+LL    E   K + ++ +  + K L++          
Sbjct: 353  MDDESMVDDRDYVGNKRLELAGQLLALLFEDLFKTYNSNLKSAIDKVLKKPSRTSEFDAF 412

Query: 428  IEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQ 487
                +    LT+G  RA STG WS    + ER +G+   L R + +  L  + R   Q +
Sbjct: 413  NTMQMQGDHLTSGFVRAISTGNWSLKRFKMER-AGVTHVLSRLSFISALGMMTRISSQFE 471

Query: 488  YTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGM 546
             T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + E PI    F  G+
Sbjct: 472  KTRKVSGPRALQPSQWGVLCPSDTPEGEACGLVKNLALMTHITTDVEEGPIIRLAFMLGV 531

Query: 547  EKLADDASYSLGG--KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQ 604
            E ++      + G   + V+++G  IGV +    FVS+ R+ RR +     V +  +   
Sbjct: 532  EDISLTTGTEIYGPNSYVVYINGTIIGVTRTPTKFVSQFRKLRRARRFSEFVSVYINHHH 591

Query: 605  SEVRIFMDAGRILRPLLVVE------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEED 658
              V I  D GRI RP+++VE          I  L+  N TF   L  G++E +   EE D
Sbjct: 592  RAVHIASDGGRICRPMIIVEKGRSRVTSDHIVQLKKGNVTFDDFLRKGLVEYLDVNEEND 651

Query: 659  CCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSS 718
               A           D  P   TH E++   +LG   G+IP+ +H+ + R  YQ      
Sbjct: 652  TFIAL-------HEHDIVPTT-THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQC-AMGK 702

Query: 719  QAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAI 778
            QAIG    N   R+DTL +   YPQ+P+ +T   + +G              L  GQNA 
Sbjct: 703  QAIGAIAYNQMNRIDTLLYLSVYPQQPMVKTRTIELIG-----------YDRLPAGQNAT 751

Query: 779  VAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVN-FGK 837
            VA+  + GY+ ED+L++N+ASL+RG  R + +R     +         R +D  ++  G+
Sbjct: 752  VAIMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLLRKYPNGTFDRLADAPLDENGQ 811

Query: 838  IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA---------------DHSIKLK 882
            IQ    R D +  DG P +G  +  GDI + K + + A               +  +  K
Sbjct: 812  IQR---RYDIVQADGLPGVGERVDPGDIYVNKQSPTNATDNTFTGQAASVPYKNAPLSYK 868

Query: 883  HTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT 942
                GM+ KV++S  D+ +    V +RQ R P LGDKFSS HGQKGV G + +QE+ PF 
Sbjct: 869  SPVCGMIDKVMISDTDNDQTLIKVLIRQTRRPELGDKFSSRHGQKGVCGLIVNQEDLPFN 928

Query: 943  IQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAIT 1002
              GIVPD ++NPH FPSR T G+++E   GK       G+ +G  +Y T F    V+ ++
Sbjct: 929  EDGIVPDTIMNPHGFPSRMTVGKMIELLAGKA------GVLTGKLQYGTAFGGSKVEDMS 982

Query: 1003 EQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLI---------HMSEDKVKFRN 1053
              L   GFS  G + L  G TGE + + ++ GP +YQ+ I         HM  DK+  R 
Sbjct: 983  RILIEHGFSYGGKDMLTSGITGEPLEAYVYFGPIYYQKAILTVYFQKLKHMVMDKMHARA 1042

Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
             GP   LTRQP   R R GG++ GEMERDCLI +GA   L ERL   SD +++  C++C 
Sbjct: 1043 RGPRATLTRQPTEGRSREGGLRLGEMERDCLIGYGATQLLLERLMISSDKFEVGACQEC- 1101

Query: 1114 NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
                        G      +C  C S   +    +PY AKLL QEL +M +  + 
Sbjct: 1102 ------------GLMGYNGWCTYCKSSKKMATLTIPYAAKLLFQELMAMNVVPRL 1144


>gi|55583704|gb|AAV53371.1| RNA polymerase II second largest subunit [Strobilomyces floccopus]
          Length = 908

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 316/891 (35%), Positives = 470/891 (52%), Gaps = 99/891 (11%)

Query: 258  SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG 317
            ++ ++  +IPIW++F ALGV SD++I+  I +  +D  +L +L   I D     D     
Sbjct: 51   TIPYIRVDIPIWVVFRALGVISDRDILEHICYDMQDSQMLEMLKPCIDDGFVIQDR---- 106

Query: 318  RNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLH----GTKQKARFLGYMVK 366
              AL ++    +GTT   G S E       E +   + P +        +KA F GYM+ 
Sbjct: 107  EVALDFIGN--RGTT--TGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIH 162

Query: 367  CLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR 426
             LL A   RR+ D+RD F  KRL+LAG LL    ++      K + + LQ+ +   +   
Sbjct: 163  RLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFKKLTKDVYRYLQKCVETHKEFN 222

Query: 427  PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
             +   +    +TNGL  + +TG W    K     +G+   L R     TL  LRR    +
Sbjct: 223  -LSLAVKHQTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPL 281

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSG 545
               GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  S   P+ E L   G
Sbjct: 282  GREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIEFLEEWG 341

Query: 546  MEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQS 605
            +E L ++A  S     KVFV+G W+GV +D  + V  +++ RR+ ++  +V + RD  + 
Sbjct: 342  LESLEENAHSSTPCT-KVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRER 400

Query: 606  EVRIFMDAGRILRPLLVVENM------GKIKSL-------EGKNYTFQALLDHGIIELVG 652
            E+R++ DAGR+ RPL +VEN         IK L       +G+ + ++ L+  GIIEL+ 
Sbjct: 401  ELRLYTDAGRVCRPLFIVENQQLALQKKHIKWLNQGFRDDDGEEFKWEQLVKTGIIELLD 460

Query: 653  TEEEEDCCTAWGIKYLLKDIEDKK--------------------------PIKFTHCELD 686
             EEEE       I    +D+E+ +                             +THCE+ 
Sbjct: 461  AEEEETVM----ISMTPEDLENSRLQSAGINPHENDGDFDPAARLKAGINAHTWTHCEIH 516

Query: 687  MSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPL 746
             S +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DT+++ L+YPQ+PL
Sbjct: 517  PSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGIYLTNFLVRMDTMANILYYPQKPL 575

Query: 747  FRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFR 806
              T   +            L   EL  GQNAIVA+  + GYNQED ++MN++S++RG+FR
Sbjct: 576  ATTRSME-----------YLKFRELPAGQNAIVAILCYSGYNQEDFVIMNQSSIDRGLFR 624

Query: 807  SEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIV 866
            S + RSY  +++ K    +    +       ++ K G  D L+DDG    G N++  DI+
Sbjct: 625  SIYYRSY-MDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVKGEDII 683

Query: 867  IGKYADSGADH---------------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQV 911
            IGK A    D                S  LK TE G+V +V++++N +G+ F  V +R  
Sbjct: 684  IGKTAPIPPDSEELGQRTRTHNRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRST 743

Query: 912  RSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAAL 971
            R P +GDKF+S HGQKG +G    QE+ PFT +GIVPD+VINPHA PSR T G L+E  L
Sbjct: 744  RIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDLVINPHAIPSRMTIGHLVECLL 803

Query: 972  GKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLI 1031
             K    +G       +  ATPF   +V++++  L + G+   G E +Y G TG+ +++ I
Sbjct: 804  SKVATLIGN------EGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTGKKLQAQI 857

Query: 1032 FIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1082
            ++GPT+YQRL HM +DK+  R  GPV  LTRQPV  R R GG++FGEMERD
Sbjct: 858  YLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERD 908


>gi|402220302|gb|EJU00374.1| subunit of DNA dependent RNA-polymerase [Dacryopinax sp. DJM-731 SS1]
          Length = 1151

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 371/1215 (30%), Positives = 572/1215 (47%), Gaps = 173/1215 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++S+N F+   LQ+   +    +V    DP        R+  +++  +
Sbjct: 27   AFLKVKGLVKQHVDSFNYFVDVDLQQILRA--NNLVTSDVDP--------RF-YIKYTHI 75

Query: 92   TLDKPSFFAGNGGDEHDMF---PRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGR 148
             +  P     + G+  + F   P   RL++ TYS R+ V V++               G 
Sbjct: 76   AVGPPERADPDQGESPERFSVTPHECRLRDTTYSGRITVNVEY-------------IRGN 122

Query: 149  EQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGAE 202
            ++ I++         I IGR+P+M++S+ C + G  + +      C  D GGYF++KG E
Sbjct: 123  KKIIRR--------GIEIGRLPIMLRSNKCVLTGKSEAELARMQECPLDPGGYFVVKGTE 174

Query: 203  KVFVAQEQICLKRLWVSN--SMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVY 260
            KV + QEQ+   R+ V    S G  +A  + +   R          +   K  +  L   
Sbjct: 175  KVILVQEQLSKNRIIVETDPSKGVVMASVTSSTHER------KSKTYVLTKKNKIYLKHN 228

Query: 261  FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNA 320
             ++ +IPI I+  A+GV SDKEI+ L+   C         FA+  +   +   F + R A
Sbjct: 229  SVTEDIPICIVLKAVGVQSDKEILQLV---CGHNEEYRESFAANLEDAARLGVFTQ-RQA 284

Query: 321  LKYVDKLIK------------GTTFPPGESTEECMNTYLFPSLHGT-------KQKARFL 361
            L+Y+   +K            GT  P   + EE M       L          + KA ++
Sbjct: 285  LEYMGSRVKVNRPRPFGAPLAGTQGPRRPAWEEAMEALATIVLAHVEMEGLDFRPKAVYI 344

Query: 362  GYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL-----------ERELKVHIAHARKR 410
              MV+ +L A    +  D+RD   NKRLELAG+LL            ++LK++I    K+
Sbjct: 345  AVMVRRVLMAMKDEKLVDDRDYVGNKRLELAGQLLALLFEDLFKKFNQDLKMNIDKVLKK 404

Query: 411  MAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRA 470
             ++  + D+     ++ + ++  +  +T G  RA STG WS    + +R +G+   L R 
Sbjct: 405  PSRTEEYDV-----IKALTFHAQSEGITQGFIRAISTGNWSLKRFKMDR-AGVTHVLSRL 458

Query: 471  NPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVS 530
            + +  L  + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++
Sbjct: 459  SFVSALGMMTRITSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHIT 518

Query: 531  TSILE-PIFEQLFNSGME--KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKR 587
            T + E PI    F  G+E   LA          F V V+G  IG+ +    FV  LR+ R
Sbjct: 519  TDVEEEPIVRVAFMLGVEDINLATGPEIHHPDTFMVNVNGSIIGLTRQPGRFVVALRKLR 578

Query: 588  RRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE------NMGKIKSLEGKNYTFQA 641
            R   +   V +  +     V I  D GRI RP+++VE          IK L+  + TF  
Sbjct: 579  RAGRISEFVSVYINHHHKTVHIAADGGRICRPMIIVEKGRPRVTEDHIKLLKKGHVTFDD 638

Query: 642  LLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFA 701
             L  G++E +   EE D   A   + +L           TH E++   +LG   G+IP+ 
Sbjct: 639  FLRKGLVEYLDVNEENDSYIALYEREILPTT--------THLEIEPFTILGAVAGLIPYP 690

Query: 702  NHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYG 761
            +H+ + R  YQ      QAIG    N   R+DTL + + YPQ+P+ +T   + +      
Sbjct: 691  HHNQSPRNTYQC-AMGKQAIGAIGYNQFRRIDTLLYVMVYPQQPMVKTRTIELIN----- 744

Query: 762  HNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKE 821
                    +L  GQNA VAV  + GY+ ED+ ++NRASL+RG  R +  R        K 
Sbjct: 745  ------YDKLPAGQNATVAVMSYSGYDIEDASMINRASLDRGYGRCQVYR--------KN 790

Query: 822  MQVKRRSSD---DMVNFGKIQSKIGR----VDSLDDDGFPFIGANLQSGDIVIGKYA--- 871
            + + R+  +   D +    I    GR      +L  DG   +G  L+ GD+ I K +   
Sbjct: 791  VTLIRKYPNGTFDRLADAPIDEVTGRPPDKYSALQADGIAGVGEQLRPGDVYINKQSPAN 850

Query: 872  -----------DSGADHSIKLKHTER-------GMVQKVVLSSNDDGKNFSVVSLRQVRS 913
                       DS +   ++ K+T         G+V KV+L+  ++ +    V +RQ R 
Sbjct: 851  ANDNSFNANVLDSTSTSLVQYKNTPMTYRSPVGGIVDKVMLTETENDQTLVKVLIRQTRR 910

Query: 914  PCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGK 973
            P LGDKFSS HGQKGV G + ++E+ PF  QGI PD++ NPH  PSR T G+++E   GK
Sbjct: 911  PELGDKFSSRHGQKGVCGLIINEEDMPFNDQGIKPDVIFNPHGMPSRMTVGKMIELLAGK 970

Query: 974  GIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFI 1033
                   G+  G  +Y T F    V+ +++ L   GF+  G + L  G TGE + + ++ 
Sbjct: 971  A------GVLKGKLQYGTAFGGSKVEDMSQILIEKGFNYAGKDYLTSGLTGEPMEAYVYF 1024

Query: 1034 GPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL 1093
            GP +YQ+L HM  DK+  R  GP   LTRQP   R R GG++ GEMERDCLI +GA   L
Sbjct: 1025 GPIYYQKLKHMVMDKMHSRARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGATQLL 1084

Query: 1094 HERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAK 1153
             ERL   SD+++++ C++C             G      +C +C S   + K  +PY AK
Sbjct: 1085 LERLMISSDAFEINACQEC-------------GLLGYNGWCPLCKSSKRVAKLTIPYAAK 1131

Query: 1154 LLCQELFSMGITLKF 1168
            LL QEL +M +  + 
Sbjct: 1132 LLFQELMAMNVVPRL 1146


>gi|14601675|ref|NP_148216.1| DNA-directed RNA polymerase subunit B [Aeropyrum pernix K1]
 gi|5105547|dbj|BAA80860.1| DNA-directed RNA polymerase subunit B [Aeropyrum pernix K1]
          Length = 1169

 Score =  496 bits (1277), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 367/1208 (30%), Positives = 579/1208 (47%), Gaps = 158/1208 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKG---------EGEWR 82
            SF  E GL    ++S+N  +   +QK  DS  E  V P +               E E  
Sbjct: 24   SFIRETGLARQHLDSFNRLVTQEIQKIIDSIRE--VRPQWRIYAGRRRYRRGRFEEHEIH 81

Query: 83   YASMR--FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVT 140
               ++  FG+    +P         +  + P   R++ +TYS+ + V             
Sbjct: 82   LPDVKIVFGKARFKEPMAREVIESFDRRVTPFECRVRGITYSAPLMV------------- 128

Query: 141  SDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGG 194
                    E  I ++ + ++T  + I   PVMVKS L  +        +E G+   D GG
Sbjct: 129  --------EMTIVQDNMIEKTREVKIADFPVMVKSVLDPLSKYDEETVIEMGEDPGDPGG 180

Query: 195  YFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGE 254
            YFII G+EKV VAQE + + R+ V+ S   T       K    ++ L   +  + +  G 
Sbjct: 181  YFIINGSEKVIVAQEDLAVNRIIVNKSTAATARITHTAKAVSTVLGLRRQAIVDRMSDGT 240

Query: 255  KVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEF 314
               S+  L   IP+ +L  ALG+  D EI+  +     D  +   +  S+          
Sbjct: 241  LEASLSRLRYRIPLVVLLRALGLEKDMEIMLAV---SADPDVQREMLPSLEKGRALAP-- 295

Query: 315  RKGRNALKYVDKLIKGTTFPPGES-------TEECMNTYLFPSLHGTKQ----KARFLGY 363
                +ALKY+     G    PG+         EE ++T L P L    +    KA FL  
Sbjct: 296  -TKEDALKYL-----GNRIAPGQPLDVRIRRAEEFLDTQLLPHLGNRPEDRIKKAYFLAE 349

Query: 364  MVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDR 423
            M   +LQ Y G+R  D++D   NKRL LAG+L+    +  +      MA+ L+  L   R
Sbjct: 350  MANRVLQLYLGKRGEDDKDFLGNKRLRLAGDLIAELFRESLEALANTMAQKLEEQLAERR 409

Query: 424  TVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTR 483
             +R +++ +  +I+++ L  A +TG W     RT    GI   L R N +  L  LRR  
Sbjct: 410  QIR-LDFLVRPTIISDRLKGAIATGNWGQ--DRT----GISQQLDRTNWISLLSHLRRVI 462

Query: 484  QQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFN 543
              +       +AR  H SHWG+ C   TP+G NCGLVKNL ++  +S  + E + E++  
Sbjct: 463  SPLSRGQAHFEARDLHGSHWGRYCPFETPEGINCGLVKNLALSAYISVGVDESVVEEILV 522

Query: 544  -----SGMEKLADDASYS-------LGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKE 591
                 + +E++ ++A  +       L G  KVF++G  +G   +      ++R  RR  +
Sbjct: 523  KDLGVAPLERILEEAKQAGEPPEIMLKGT-KVFINGRPLGYHPNGAELARKIRELRRSDK 581

Query: 592  L----PTQVEIK--RDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTF 639
            L    P +V +   R+    E+ +  D+GR++RP++VVEN         ++ L     TF
Sbjct: 582  LEVERPWEVSVYHLREGEIDELYVNTDSGRLMRPVVVVENGEPKLTREHVEKLSRGEITF 641

Query: 640  QALLDHGIIELVGTEEEEDCCTA---WGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCG 696
              L+  G++E++  EEE++   A   W +             + TH EL +  ++G++  
Sbjct: 642  WDLVKQGVVEMLDPEEEQNALIAELPWEVTK-----------EHTHMELWVPAIVGVAAA 690

Query: 697  IIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLG 756
             I +  H+ + R  YQ+   + QA+G    N  IR+D+ S+ L YPQ P+ +T + D +G
Sbjct: 691  TIGYLEHNQSPRNTYQA-AMAKQALGVYALNYRIRLDSHSYLLQYPQVPIVQTRMLDIMG 749

Query: 757  KPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAE 816
                 +N    RP    GQN +VA+  + GYN ED+L+ N+ S++ G+ R+   R Y   
Sbjct: 750  -----YNE---RP---AGQNMVVAIMSYTGYNIEDALIFNKGSIDMGLARAYFFRVYTG- 797

Query: 817  VDNK-----EMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA 871
            ++N+       ++     D++ ++    +       L+ DG       ++ G+I+IG+ +
Sbjct: 798  IENEYPGGERDRITLPKPDEVYDYRGAAA----YAKLEADGIVAPETEVEGGEILIGRVS 853

Query: 872  DSG---------------ADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCL 916
                               D SI ++  E+G+V  VV+S+  +      V +R +R P +
Sbjct: 854  PPRFLGEGRVISMATVRRRDTSIPMRLGEKGVVDMVVISTTVERNKLVKVRVRNLRIPEI 913

Query: 917  GDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIA 976
            GDKF+S HGQKGV+G +  + + P+T +GI PD+++NPHA PSR T GQLLE   GK  A
Sbjct: 914  GDKFASRHGQKGVIGMIFPRYDMPYTEEGIEPDVILNPHAIPSRMTVGQLLEEIAGKLGA 973

Query: 977  ALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPT 1036
              G+ +       ATPF    +D +  +L + G+     E +YDGRTG+++ + I IG  
Sbjct: 974  IKGRFVD------ATPFFKEDIDGLRIELLKEGYDPNAREVMYDGRTGQIIEAPITIGVA 1027

Query: 1037 FYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHER 1096
            +YQRL HM  DK+  R TG VH LTRQP   + R GG++FGEMERDCL+ HGA+  L +R
Sbjct: 1028 YYQRLYHMVADKIHARATGRVHLLTRQPTEGKARQGGLRFGEMERDCLVGHGASMLLRDR 1087

Query: 1097 LFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLC 1156
            +   SD+Y M++C  C N+A          R+ +   C I     DI    VPY  KLL 
Sbjct: 1088 MLDNSDAYVMYVCNTCGNIAWF-------NRRKKVLECPIHGEEGDIRPVKVPYAFKLLL 1140

Query: 1157 QELFSMGI 1164
            QE+ SM I
Sbjct: 1141 QEITSMMI 1148


>gi|340344216|ref|ZP_08667348.1| DNA-directed RNA polymerase subunit beta [Candidatus Nitrosoarchaeum
            koreensis MY1]
 gi|339519357|gb|EGP93080.1| DNA-directed RNA polymerase subunit beta [Candidatus Nitrosoarchaeum
            koreensis MY1]
          Length = 1115

 Score =  496 bits (1277), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 371/1185 (31%), Positives = 576/1185 (48%), Gaps = 149/1185 (12%)

Query: 38   GLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPS 97
            G+    +NS++EF++ GLQ   +  G+  +E    P K          ++ G+V L +P 
Sbjct: 20   GIARQHLNSFDEFLERGLQSIINEVGQIEIENAEYPYK----------IQLGKVKLQQPR 69

Query: 98   FFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVL 157
                +G   H + P  ARL+N++YS+   V ++  V    ++   +F             
Sbjct: 70   MMELDGSITH-ITPAEARLRNVSYSA--PVMMEASVVEDGKILESRF------------- 113

Query: 158  SDETTNIIIGRIPVMVKSDLCWM------KGVEKGDCDFDHGGYFIIKGAEKVFVAQEQI 211
                  + IG +PVM KS+ C +      K VE G+   D GGYFII G+E+V V  E +
Sbjct: 114  ------VHIGDVPVMAKSNACILHNFSTQKLVEHGEDPNDPGGYFIINGSERVIVGLEDL 167

Query: 212  CLKRLWVS-NSMGWTVAYKSENKRNRLIVRLVDMSKFEDI--KGGEKVLSVYFLSTEIPI 268
               ++ V   S+G    +K++   + +  R    +K E +    G  V  +     +IP+
Sbjct: 168  SYNKIIVDRESVGGNTVFKAKVYSSIVGYR----AKLELVMKNDGLIVARIPGSPVDIPV 223

Query: 269  WILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLI 328
              L  ALG+ SD+EI   +    E   I N L  S      K  +    ++A+ Y+ K I
Sbjct: 224  VTLTRALGLESDREIAAAVSLVDE---IQNELEGSFE----KAGDVPTAKDAIVYISKRI 276

Query: 329  KGTTFPPG-------ESTEECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRRK 377
                  PG       +  E  ++  L P L       K+KA+FLG     LL+   G   
Sbjct: 277  A-----PGMLEEFQIKRAETLLDWGLLPHLGKHPENRKEKAQFLGEAACKLLELKLGWIS 331

Query: 378  CDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASIL 437
             D++D + NK ++ AG++L    +    +  + M   L+R     R +  +   +   I+
Sbjct: 332  PDDKDHYGNKVIKFAGQMLADLFRTAFRNLVRDMKYQLERS-GQKRGINAVAAAIRPGII 390

Query: 438  TNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARY 497
            T+ L+ A +TG W        R+ G+   L R N L T+  LRR +  +  T    +AR 
Sbjct: 391  TDKLNNAIATGNWGR-----GRV-GVTQLLDRTNYLSTISHLRRIQSPLSRTQPNFEARD 444

Query: 498  PHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-LEPIFEQLFNSGMEKLADDASYS 556
             H +H+G+IC   TP+G NCGLVKNL ++G++S ++  E I E+L++ G     D     
Sbjct: 445  LHATHFGRICPSETPEGSNCGLVKNLALSGIISVNVPSEEIVEKLYDLGTIHFFDAKEDV 504

Query: 557  LGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQ---SEVRIFMD- 612
                 ++FVDG  IG  KD       LR  RR  ++   V I   +     S  R++++ 
Sbjct: 505  KKDGARIFVDGRLIGYYKDGAELAESLRELRRNSKIHPHVGISFHQSAIEGSTKRLYVNC 564

Query: 613  -AGRILRPLLVVENMGKIKS------LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGI 665
             AGR+LRPL+++++   + +      +  K  ++  LL  G++E++   EEE+C      
Sbjct: 565  NAGRVLRPLIIIKDNKPLLTQDLLDKISKKLLSWTDLLRMGVLEMIDANEEENC------ 618

Query: 666  KYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPT 725
             Y+  D +D K  K TH E+    +LG    IIP+  H+ + R  Y+S   + Q++GF T
Sbjct: 619  -YITLDEKDSK--KHTHLEVFPPAILGAGASIIPYPEHNQSPRNTYESA-MAKQSLGFST 674

Query: 726  TNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHL 785
               +       H + YPQ P+  T     LG        +  RP    GQN +VAV    
Sbjct: 675  PMMNTSTYVRQHLMLYPQTPIVNTKAMKLLG--------LEDRPA---GQNCVVAVLPFD 723

Query: 786  GYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF-----GKIQS 840
            GYN ED++V++R+S++RG+ R+   R Y AE   K+     R + ++ N      G    
Sbjct: 724  GYNIEDAIVLSRSSVDRGLGRTFFFRIYDAEA--KQYPGGMRDAFEIPNAEDNIRGYKGE 781

Query: 841  KIGRVDSLDDDGFPFIGANLQSGDIVIGK------------YADSGA---DHSIKLKHTE 885
            K  R+  L++DG     + +  GDI+IGK            +  SG    D SI ++ +E
Sbjct: 782  KAYRL--LEEDGVVASESPVHGGDILIGKTSPPRFMEEYREFESSGPYRRDTSIGVRPSE 839

Query: 886  RGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQG 945
             G+V  VV++ +++G     + +R +R P +GDKF+S HGQKGVLG L   E+ P+T  G
Sbjct: 840  TGVVDTVVMTQSNEGGKMYKIRVRDMRIPEIGDKFASRHGQKGVLGILAKAEDLPYTADG 899

Query: 946  IVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQL 1005
            I PD++INPHAFPSR T G  +E+  GK  A        G +   + F    +D +   +
Sbjct: 900  ISPDVLINPHAFPSRMTVGMFMESICGKAAA------LRGSQFDGSAFVGEKMDEVKPVM 953

Query: 1006 HRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPV 1065
              AGF   G E +YDGRTG+     +FIG  +YQ+L HM  DK+  R  G V  LT+QP 
Sbjct: 954  DAAGFKYSGKETMYDGRTGKSFPVDVFIGVVYYQKLHHMVADKIHARARGQVQMLTKQPT 1013

Query: 1066 ADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVA--NVIQRVV 1123
              R R GG++FGEMERDCLIA+GA+  L +RL   SD   + +C +C  VA  +V QR  
Sbjct: 1014 EGRARGGGLRFGEMERDCLIAYGASMILKDRLLDESDKSDIFVCERCGLVAYHDVKQRKY 1073

Query: 1124 GGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
                      CR+C     +   +V Y  KLL QE+ S+ +  + 
Sbjct: 1074 ---------ICRVCGDKAKVSSVSVAYAFKLLLQEMQSLNVAPRL 1109


>gi|403334977|gb|EJY66659.1| RNA polymerase III [Oxytricha trifallax]
          Length = 1146

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 371/1211 (30%), Positives = 573/1211 (47%), Gaps = 185/1211 (15%)

Query: 28   KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF--DSFGETIVEPGYDPSKKGEGEWRYAS 85
            K   +F    GLV   I+SYN F+   L++    + F  + ++P +              
Sbjct: 38   KLVPAFLRLRGLVKAHIDSYNHFLNVDLKEIIRANQFITSDIDPAF-------------Y 84

Query: 86   MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
            ++F  + +  P        ++H++ P   R++++TYS+ + V+++   YT+         
Sbjct: 85   LKFTDIHVGMPKI--EEDFEQHNLMPHECRIRDLTYSAPIYVEIE---YTK--------- 130

Query: 146  TGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIK 199
             G   Y++ EVL        IGR+P+M+ +  CW+ G+         +C +D  GYFIIK
Sbjct: 131  -GDRIYLKNEVL--------IGRMPMMLGASNCWLNGMSHERLASIKECPYDPRGYFIIK 181

Query: 200  GAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGE 254
            G EKV + QEQ+   R+ +      N      +   E K    IV           K  +
Sbjct: 182  GVEKVLLIQEQMSKNRIIIELDSKQNVCAQVTSSTYERKSRTTIVH----------KNDK 231

Query: 255  KVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEF 314
              L     + +IP+ + F A+G+ +D+EI  +I     +   L+ L  S+ +A       
Sbjct: 232  FYLKHNTFTDDIPVVVAFKAMGMETDQEIAQIIG---TEAKYLDGLALSLQEASQL--NI 286

Query: 315  RKGRNALKYVDKLIKGTTFPPG------ESTEECMNTYLFPSLHGTKQ-----KARFLGY 363
                 AL+++   +K      G      E   + +   +   +  +       K R+LG 
Sbjct: 287  LSQAQALEFIANKVKSLKSFQGRPKTKLEEARDILTNVVLAHIPMSAHLPYFAKCRYLGM 346

Query: 364  MVKCLLQAYSGRRKCDNRDDFRNKRLELAGEL---------------LERELKVHIAHAR 408
            M++ +++A     K D++D + NKRLEL+G+L               L++++ + +   +
Sbjct: 347  MIRRIIEAVHDPSKLDDKDYYGNKRLELSGQLISLLFEDLFKKFQFDLKKQIDIMLVKQK 406

Query: 409  KRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLG 468
            K    AL         ++P         +T GL  + S+G WS    + ER S +   L 
Sbjct: 407  KEKFDALT-------CIKP-------DTITQGLEMSISSGNWSLKRFKMERKS-VTQVLS 451

Query: 469  RANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGL 528
            R + +  L  + R   Q + T K+   R   PSHWG IC   TP+GE+CGLVKNL +T  
Sbjct: 452  RLSYIAALGMMARINSQFEKTRKISGPRALQPSHWGIICPSDTPEGESCGLVKNLALTTH 511

Query: 529  VSTSILE-PIFEQLFNSGMEK---LADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELR 584
            V+T   E P+     + GME    L  D  YS    F VF++G  IGV K    FV   R
Sbjct: 512  VTTDSPEKPLLRICIDLGMEDAALLGGDELYS-KNHFLVFLNGQPIGVVKQPHKFVRNFR 570

Query: 585  RKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE------NMGKIKSLEGKNYT 638
              R+R  +   V +   E Q+ + I  DAGR++RPL+V+E         +I+ L      
Sbjct: 571  FLRKRGRVQEFVSVYMSEQQNTINIASDAGRLVRPLIVIERGRPKLQQSQIQDLILGLRD 630

Query: 639  FQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGII 698
            F   L  G++E +   EE +   A          E+      TH E+D   +LG   G+I
Sbjct: 631  FNDFLREGLLEYLDVNEENNALIALN--------ENALTQAHTHMEIDPLTILGCVAGLI 682

Query: 699  PFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKP 758
            P+ +H+ + R  YQ      QAIG    N   RVDTL   L +PQ+PL +T   +     
Sbjct: 683  PYPHHNQSPRNTYQC-AMGKQAIGSIGLNQLNRVDTLLFLLTHPQKPLVKTKTIE----- 736

Query: 759  GYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVD 818
                  I+   EL  GQNA VA+  + GY+ ED++V+N+ASL+RG  R+ +IR Y+ ++ 
Sbjct: 737  ------IINFEELPAGQNASVAIMSYSGYDIEDAVVLNKASLDRGFARAMYIRRYQTDIK 790

Query: 819  NKEMQVKRRSSDDMVNFGKIQSKIGRV-----DSLDDDGFPFIGANLQSGDIVIGKYA-- 871
                      + D++  G  Q    R       +LD+DG   +G +LQ+GD+ I KY   
Sbjct: 791  KYS-----NGATDIILPGVSQKDQKRAFNKKFHALDEDGMARVGESLQNGDVFINKYTPV 845

Query: 872  ----DSGADHSIKLKHTER------------GMVQKVVLSSNDDGKNFSVVSLRQVRSPC 915
                 +G  + I L   E               V +V+++S  +   F  +  RQ R P 
Sbjct: 846  MGENQTGYLNEIDLTTLEYKSQAQSYKGANPAYVDRVIMTSTPENPFFIKMITRQSRVPE 905

Query: 916  LGDKFSSMHGQKGVLGFLESQENFPFTIQ-GIVPDIVINPHAFPSRQTPGQLLEAALGKG 974
            +GDKFSS HGQKGV+G +  QE+ PF+ + G  PD+++NPH FPSR T G+++E   GK 
Sbjct: 906  IGDKFSSRHGQKGVVGLIVPQEDLPFSERNGWCPDLIMNPHGFPSRMTVGKMIELISGKA 965

Query: 975  IAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIG 1034
                  G+  G  +Y T F+   V+ + + L + G+S  G + L  G TGE++   +F G
Sbjct: 966  ------GVLEGEFKYGTAFSGDPVEEMGKLLIKHGYSFDGKDVLMSGITGEVLPCFVFSG 1019

Query: 1035 PTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLH 1094
            P +YQRL HM +DK+  R  GP   LTRQP   R R GG++ GEMERDCLI +GAA  + 
Sbjct: 1020 PIYYQRLKHMVQDKMHSRARGPKSVLTRQPTEGRSREGGLRLGEMERDCLIGYGAANLIM 1079

Query: 1095 ERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDS-GDDIVKANVPYGAK 1153
            ERL   SD + ++IC +C            G     G +C  C+   D++    +PY  K
Sbjct: 1080 ERLMISSDQFVVYICNRC------------GFLGYEG-HCVYCNPHHDNVCSVKMPYACK 1126

Query: 1154 LLCQELFSMGI 1164
            LL QEL SM I
Sbjct: 1127 LLLQELQSMNI 1137


>gi|46107920|ref|XP_381019.1| hypothetical protein FG00843.1 [Gibberella zeae PH-1]
          Length = 1157

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 389/1212 (32%), Positives = 584/1212 (48%), Gaps = 166/1212 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN F+++ ++    +   TI       S+     W    + F  +
Sbjct: 37   AFLKVKGLVKQHIDSYNFFVEHEIKDIVRA-NRTI------RSEVDSNFW----LEFTDI 85

Query: 92   TLDKPSFFAGNGGDEH-DMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
             +DKP          H ++ P   RL++MTY++ + V +Q+          DK +  R+ 
Sbjct: 86   RVDKPRRQDWQDAKSHTEVTPMECRLRDMTYAAPISVDIQY--------IRDKQRIVRK- 136

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFIIKGAEKV 204
                        N+ +GR+PVM+KS +C + G       E  +C  D GGYFII G EKV
Sbjct: 137  ------------NVPLGRMPVMLKSSICRLGGANNTKMEEMNECPLDPGGYFIIGGTEKV 184

Query: 205  FVAQEQICLKRLWV-----SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
             + QEQ+   R+ V     +N +  +V   +  ++++  V L         K    +L+ 
Sbjct: 185  ILIQEQLSKNRIIVEADEKNNIISASVTSSTHERKSKTYVTL---------KKDRILLTH 235

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLI---DFTCEDCSILNILFASIHDADNKCDEFRK 316
              L   IPI I+  ALG  SD EI+ L+   D   +D  ++N       D   K   F +
Sbjct: 236  NVLVEGIPIVIILKALGGLSDMEIMQLVAGSDGRYQDEFLVNF------DEATKVGVFTQ 289

Query: 317  GRNALKYVDKLIKGT----TFPPG-------ESTEECMNTYL-FPSLHGTK--QKARFLG 362
               AL+Y+   +K       F P        E  +   N  +    + G     KA ++ 
Sbjct: 290  -HQALEYIGTRVKMAPRRGIFGPQVRRNHVEEGLDALANLVIAHVPIEGLDFYPKAIYVA 348

Query: 363  YMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRD 418
             M + +L A    +  D+RD   NKRLELAG+LL    E   K    + R  + K L+++
Sbjct: 349  MMTRRVLIAAHNPKLVDDRDFVGNKRLELAGQLLSLLFEDLFKQFTTNVRMSIDKFLKKN 408

Query: 419  LYGDRTVRPIEYYLDA-SILTN-------GLSRAFSTGAWSHPFKRTERISGIVANLGRA 470
               +R V      LDA ++++N       G++RA  TG W+       R +G+   L R 
Sbjct: 409  ---NRAVP-----LDAVNMISNHANNIGYGINRAIQTGNWNVKRFNMNR-AGVTHVLSRL 459

Query: 471  NPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVS 530
            + +  L  + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++
Sbjct: 460  SYIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCTSDTPEGEACGLVKNLALMTHIT 519

Query: 531  TSI-LEPIFEQLF--NSGMEKLAD--DASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRR 585
            T++  EP+   +F  ++G+E + +   A     G + + V+G    + +    F  + R 
Sbjct: 520  TNVDEEPVKRWIFTLDAGVEPIRNFSGAEMHREGSYIIHVNGTPFALTRYPKRFAQKFRT 579

Query: 586  KRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYT 638
             RRR  +   V I  +   + V I  D GRI RP ++V+N GK       ++ L+    T
Sbjct: 580  MRRRGWISPFVGININTHFNAVHIATDEGRICRPYIIVKN-GKQKLKPEHLRLLQMGKAT 638

Query: 639  FQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGII 698
            F   L+ GI+E +   EE D         L+   E +     TH E++   +LG   G+I
Sbjct: 639  FDDFLNRGIVEYLDVNEENDA--------LITIYEHQVTQSTTHLEIEPFTVLGAVAGLI 690

Query: 699  PFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKP 758
            PF +H+ + R  YQ      QAIG    N   R+DTL + L YPQRP+   +IS  +   
Sbjct: 691  PFPHHNQSPRNTYQCAM-GKQAIGAIAYNQFNRIDTLLYTLVYPQRPM---VISKTIQLI 746

Query: 759  GYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVD 818
            GY         +L  GQNA V V  + GY+ ED+LV+N+AS++RG  R +  R Y  E+ 
Sbjct: 747  GYD--------KLPAGQNATVVVMSYSGYDIEDALVLNKASVDRGFGRCQVFRKYTTELQ 798

Query: 819  NKEMQVKRRSSD-DMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA------ 871
                  + R  D +M   GK + +I + ++LDDDG   +G  + SG+ ++ K        
Sbjct: 799  KYPNGRRERIGDPEMEGEGKSKRRITKHEALDDDGLAIVGYKVHSGEAMVKKETPLDQTS 858

Query: 872  -----DSGA----DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSS 922
                 D G     D S+  +  +   + KV++S  +       V  RQ R P LGDKFSS
Sbjct: 859  TGIGLDRGPGEFRDSSVSYRIADPAYIDKVMISQTEKDTTVIKVQTRQTRRPELGDKFSS 918

Query: 923  MHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGI 982
             HGQKGV+G +  QE+ PF+  G+ PDI++NPH FPSR T G+LLE   GK     G+  
Sbjct: 919  RHGQKGVVGIIVEQEDLPFSDSGLSPDIIMNPHGFPSRMTVGKLLECLTGKASIIHGRPD 978

Query: 983  CSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLI 1042
                  +   F +  ++ +++ L   GFS  G +    G TGE + + +F GP +YQRL 
Sbjct: 979  YG----FGDAFRSHPLEEMSQVLVDHGFSWEGKDYFTSGITGEPLEAYVFNGPIYYQRLK 1034

Query: 1043 HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSD 1102
            HM +DK+  R+ GP   LTRQP   R R GG++ GEMERDCLIA+GA+  L ERL   SD
Sbjct: 1035 HMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMISSD 1094

Query: 1103 SYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSM 1162
              ++ IC++C            G    +G YC  C S  ++ K  +PY AKLL QEL SM
Sbjct: 1095 GTEIDICQQC------------GLFGYKG-YCHTCKSTREVTKMTMPYAAKLLVQELISM 1141

Query: 1163 --GITLKFDTEF 1172
              G+ L+ D EF
Sbjct: 1142 NVGVRLQMDDEF 1153


>gi|408388464|gb|EKJ68148.1| hypothetical protein FPSE_11615 [Fusarium pseudograminearum CS3096]
          Length = 1157

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 389/1212 (32%), Positives = 584/1212 (48%), Gaps = 166/1212 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN F+++ ++    +   TI       S+     W    + F  +
Sbjct: 37   AFLKVKGLVKQHIDSYNFFVEHEIKDIVRA-NRTI------RSEVDSNFW----LEFTDI 85

Query: 92   TLDKPSFFAGNGGDEH-DMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
             +DKP          H ++ P   RL++MTY++ + V +Q+          DK +  R+ 
Sbjct: 86   RVDKPRRQDWQDAKSHTEVTPMECRLRDMTYAAPISVDIQY--------IRDKQRIVRK- 136

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFIIKGAEKV 204
                        N+ +GR+PVM+KS +C + G       E  +C  D GGYFII G EKV
Sbjct: 137  ------------NVPLGRMPVMLKSSICRLGGANNTKMEEMNECPLDPGGYFIIGGTEKV 184

Query: 205  FVAQEQICLKRLWV-----SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
             + QEQ+   R+ V     +N +  +V   +  ++++  V L         K    +L+ 
Sbjct: 185  ILIQEQLSKNRIIVEADEKNNIISASVTSSTHERKSKTYVTL---------KKDRILLTH 235

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLI---DFTCEDCSILNILFASIHDADNKCDEFRK 316
              L   IPI I+  ALG  SD EI+ L+   D   +D  ++N       D   K   F +
Sbjct: 236  NVLVEGIPIVIILKALGGLSDMEIMQLVAGSDGRYQDEFLVNF------DEATKVGVFTQ 289

Query: 317  GRNALKYVDKLIKGT----TFPPG-------ESTEECMNTYL-FPSLHGTK--QKARFLG 362
               AL+Y+   +K       F P        E  +   N  +    + G     KA ++ 
Sbjct: 290  -HQALEYIGTRVKMAPRRGIFGPQVRRNHVEEGLDALANLVIAHVPIEGLDFYPKAIYVA 348

Query: 363  YMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRD 418
             M + +L A    +  D+RD   NKRLELAG+LL    E   K    + R  + K L+++
Sbjct: 349  MMTRRVLIAAHNPKLVDDRDFVGNKRLELAGQLLSLLFEDLFKQFTTNVRMSIDKFLKKN 408

Query: 419  LYGDRTVRPIEYYLDA-SILTN-------GLSRAFSTGAWSHPFKRTERISGIVANLGRA 470
               +R V      LDA ++++N       G++RA  TG W+       R +G+   L R 
Sbjct: 409  ---NRAVP-----LDAVNMISNHANNIGYGINRAIQTGNWNVKRFNMNR-AGVTHVLSRL 459

Query: 471  NPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVS 530
            + +  L  + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++
Sbjct: 460  SYIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCTSDTPEGEACGLVKNLALMTHIT 519

Query: 531  TSI-LEPIFEQLF--NSGMEKLAD--DASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRR 585
            T++  EP+   +F  ++G+E + +   A     G + + V+G    + +    F  + R 
Sbjct: 520  TNVDEEPVKRWIFTLDAGVEPIRNFSGAEMHREGSYIIHVNGTPFALTRYPKRFAQKFRT 579

Query: 586  KRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYT 638
             RRR  +   V I  +   + V I  D GRI RP ++V+N GK       ++ L+    T
Sbjct: 580  MRRRGWISPFVGININTHFNAVHIATDEGRICRPYIIVKN-GKQKLKPEHLRLLQMGKAT 638

Query: 639  FQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGII 698
            F   L+ GI+E +   EE D         L+   E +     TH E++   +LG   G+I
Sbjct: 639  FDDFLNRGIVEYLDVNEENDA--------LITIYEHQVTQSTTHLEIEPFTVLGAVAGLI 690

Query: 699  PFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKP 758
            PF +H+ + R  YQ      QAIG    N   R+DTL + L YPQRP+   +IS  +   
Sbjct: 691  PFPHHNQSPRNTYQCAM-GKQAIGAIAYNQFNRIDTLLYTLVYPQRPM---VISKTIQLI 746

Query: 759  GYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVD 818
            GY         +L  GQNA V V  + GY+ ED+LV+N+AS++RG  R +  R Y  E+ 
Sbjct: 747  GYD--------KLPAGQNATVVVMSYSGYDIEDALVLNKASVDRGFGRCQVFRKYTTELQ 798

Query: 819  NKEMQVKRRSSD-DMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA------ 871
                  + R  D +M   GK + +I + ++LDDDG   +G  + SG+ ++ K        
Sbjct: 799  KYPNGRRERIGDPEMEGEGKNKRRITKHEALDDDGLAIVGYKVHSGEAMVKKETPLDQTS 858

Query: 872  -----DSGA----DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSS 922
                 D G     D S+  +  +   + KV++S  +       V  RQ R P LGDKFSS
Sbjct: 859  TGIGLDRGPGEFRDSSVSYRIADPAYIDKVMISQTEKDTTVIKVQTRQTRRPELGDKFSS 918

Query: 923  MHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGI 982
             HGQKGV+G +  QE+ PF+  G+ PDI++NPH FPSR T G+LLE   GK     G+  
Sbjct: 919  RHGQKGVVGIIVEQEDLPFSDSGLSPDIIMNPHGFPSRMTVGKLLECLTGKASIIHGRPD 978

Query: 983  CSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLI 1042
                  +   F +  ++ +++ L   GFS  G +    G TGE + + +F GP +YQRL 
Sbjct: 979  YG----FGDAFRSHPLEEMSQVLVDHGFSWEGKDYFTSGITGEPLEAYVFNGPIYYQRLK 1034

Query: 1043 HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSD 1102
            HM +DK+  R+ GP   LTRQP   R R GG++ GEMERDCLIA+GA+  L ERL   SD
Sbjct: 1035 HMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMISSD 1094

Query: 1103 SYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSM 1162
              ++ IC++C            G    +G YC  C S  ++ K  +PY AKLL QEL SM
Sbjct: 1095 GTEIDICQQC------------GLFGYKG-YCHTCKSTREVTKMTMPYAAKLLVQELISM 1141

Query: 1163 --GITLKFDTEF 1172
              G+ L+ D EF
Sbjct: 1142 NVGVRLQMDDEF 1153


>gi|161527855|ref|YP_001581681.1| DNA-directed RNA polymerase subunit B [Nitrosopumilus maritimus SCM1]
 gi|160339156|gb|ABX12243.1| RNA polymerase Rpb2 domain 6 [Nitrosopumilus maritimus SCM1]
          Length = 1115

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 366/1186 (30%), Positives = 582/1186 (49%), Gaps = 151/1186 (12%)

Query: 38   GLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPS 97
            G+    +NS++EF++ GLQ   +  G+  +E    P K          ++ G+V L +P 
Sbjct: 20   GIARQHLNSFDEFLERGLQSIINEVGQIDIENAEYPYK----------IQLGKVKLQQPR 69

Query: 98   FFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVL 157
                +G   H + P  ARL+N++YS+   V ++  V    ++   +F             
Sbjct: 70   MMELDGSITH-ITPAEARLRNVSYSA--PVMMEASVVEDGKILESRF------------- 113

Query: 158  SDETTNIIIGRIPVMVKSDLCWM------KGVEKGDCDFDHGGYFIIKGAEKVFVAQEQI 211
                  + IG +PVM KS+ C +      K VE G+   D GGYFII G+E+V V  E +
Sbjct: 114  ------VHIGDVPVMAKSNACILHNFSTQKLVEHGEDPNDPGGYFIINGSERVIVGLEDL 167

Query: 212  CLKRLWVS-NSMGWTVAYKSENKRNRLIVRLVDMSKFEDI--KGGEKVLSVYFLSTEIPI 268
               ++ V   ++G  + +K++   + +  R    +K E +    G  V  +     +IP+
Sbjct: 168  SYNKIIVDRETVGGNIVHKAKVYSSIVGYR----AKLELVMKNDGLIVARIPGSPVDIPV 223

Query: 269  WILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLI 328
              L  ALG+ SD+EI   +       S+++ L   +  +  K  +    ++A+ Y+ K I
Sbjct: 224  VTLMRALGLESDREIAAAV-------SLVDELQDELEASFEKAGDVPTAKDAIVYISKRI 276

Query: 329  KGTTFPPG-------ESTEECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRRK 377
                  PG       +  E  ++  L P L       K+KA+FLG     LL+      +
Sbjct: 277  A-----PGMLEEFQIKRAETLLDWGLLPHLGKHPENRKEKAQFLGEAACKLLELKLDWIR 331

Query: 378  CDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASIL 437
             D++D + NK ++ AG++L    +    +  + M   L+R     R +  +   +   I+
Sbjct: 332  PDDKDHYGNKVIKFAGQMLADLFRTAFRNLVRDMKYQLERS-GQKRGINAVAAAIRPGII 390

Query: 438  TNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARY 497
            T+ L+ A +TG W        R+ G+   L R N L T+  LRR +  +  T    +AR 
Sbjct: 391  TDKLNNAIATGNWGR-----GRV-GVTQLLDRTNYLSTISHLRRIQSPLSRTQPNFEARD 444

Query: 498  PHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-LEPIFEQLFNSGMEKLADDASYS 556
             H +H+G+IC   TP+G NCGLVKNL ++G++S ++  E I E+L++ G     D     
Sbjct: 445  LHATHFGRICPSETPEGSNCGLVKNLALSGIISVNVPSEEIVEKLYDLGTVHFFDAKEDL 504

Query: 557  LGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIK--RDELQSEVR---IFM 611
                 ++FVDG  IG  KD       LR  RR  ++   V +   + E++   R   +  
Sbjct: 505  KKDGTRIFVDGRLIGYYKDGEQLAESLRDLRRNSKIHPHVGVSFHKSEIEGSTRRLYVNC 564

Query: 612  DAGRILRPLLVVENMGKIKS------LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGI 665
            +AGR+LRPL+++++   + +      +  K  ++  LL  G++E++   EEE+C      
Sbjct: 565  NAGRVLRPLIIIKDNKPLLTADLLDKISKKLISWTDLLRMGVLEMIDANEEENC------ 618

Query: 666  KYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPT 725
             Y+  D +D K  K TH E+    +LG    IIP+  H+ + R  Y+S   + Q++GF T
Sbjct: 619  -YVTLDEKDTK--KHTHLEVFPPAILGAGASIIPYPEHNQSPRNTYESA-MAKQSLGFST 674

Query: 726  TNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHL 785
               +       H + YPQ P+  T     LG        +  RP    GQN +VAV    
Sbjct: 675  PMMNTSTYVRQHFMLYPQVPIVNTKAMKLLG--------LEDRPA---GQNCVVAVLPFD 723

Query: 786  GYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF-----GKIQS 840
            GYN ED++V+++AS++RG+ R+   R Y AE   K+     R + ++ N      G    
Sbjct: 724  GYNIEDAIVLSKASVDRGLGRTFFFRIYDAEA--KQYPGGMRDAFEIPNAEDNIRGYKGE 781

Query: 841  KIGRVDSLDDDGFPFIGANLQSGDIVIGK------------YADSGA---DHSIKLKHTE 885
            +  R+  L++DG     A ++ GDI+IGK            +  SG    D SI ++ +E
Sbjct: 782  RAYRL--LEEDGVVATEAPVKGGDILIGKTSPPRFMEEYREFESSGPYRRDTSIGVRPSE 839

Query: 886  RGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQG 945
             G+V  VV++ +++G     +  R +R P +GDKF+S HGQKGVLG L   E+ P+T  G
Sbjct: 840  TGVVDTVVMTQSNEGGKMYKIRARDMRIPEIGDKFASRHGQKGVLGILAKAEDLPYTASG 899

Query: 946  IVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRY-ATPFATPSVDAITEQ 1004
            + PD++INPHAFPSR T G ++E+  GK  A  GK       R+  + F    +D + E 
Sbjct: 900  MSPDVLINPHAFPSRMTVGMMMESICGKSAALRGK-------RFDGSAFVGEKMDEVREV 952

Query: 1005 LHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQP 1064
            +   GF   G E +YDGRTG+     +FIG  +YQ+L HM  DK+  R  G V  LT+QP
Sbjct: 953  MDAHGFEYSGKEIMYDGRTGKSFPVEVFIGVVYYQKLHHMVADKIHARARGQVQMLTKQP 1012

Query: 1065 VADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVA--NVIQRV 1122
               R R GG++FGEMERDCLIA+GA+  L +RL   SD   + +C +C  VA  +V QR 
Sbjct: 1013 TEGRARGGGLRFGEMERDCLIAYGASMILKDRLLDESDKSDIFVCERCGLVAYHDVKQRK 1072

Query: 1123 VGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
                       CR+C     +   +V Y  KLL QE+ S+ +  + 
Sbjct: 1073 Y---------VCRVCGDKAKVSSVSVAYAFKLLLQEMQSLNVAPRL 1109


>gi|324502244|gb|ADY40989.1| DNA-directed RNA polymerase III subunit RPC2 [Ascaris suum]
          Length = 1135

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 388/1230 (31%), Positives = 576/1230 (46%), Gaps = 182/1230 (14%)

Query: 16   DLGEEFLKTFCRKAAV--SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETI---VEPG 70
            DL  E +KT   K A+  +F    GLV   I S++ FI   ++    +  E I   V P 
Sbjct: 6    DLTAE-VKTLKDKWALVPAFLQVRGLVKQHIASFDYFINEDIKNILRA-NERITSDVNPS 63

Query: 71   YDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQ 130
            +          +Y  +R G      PS   G       + P   RL++MTYS+ ++V ++
Sbjct: 64   F--------YVKYLDIRVG-----TPSSEEGFTQLNEKISPHECRLRDMTYSAPIQVDIE 110

Query: 131  FQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK----- 185
            +    Q+                  VL +    I+IGR+P+M++   C +K + +     
Sbjct: 111  YTRGNQR------------------VLRN---GIVIGRMPIMLRCSKCVLKDMNEEELAR 149

Query: 186  -GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDM 244
              +C +D GGYFII+G+EKV + QEQ+   R+ +             N +  L   +  +
Sbjct: 150  VQECPYDPGGYFIIRGSEKVVLIQEQLSKNRIMIG-----------RNSKKELQCEV--L 196

Query: 245  SKFEDIKGGEKVLSV---YFL-----STEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
            S   D K    V+S    Y+L     S +IPI I+F A+G  SD +IV+ +     +   
Sbjct: 197  SSTSDRKSKTYVISKKQRYYLKHNQLSDDIPIAIIFKAMGFESDYDIVSAVGL---EEKF 253

Query: 297  LNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTF--------PPGESTEECMNTYLF 348
            +  +  SI +      +     +AL+++   +K   F        PP E       T L 
Sbjct: 254  VAAMAPSIEEC--AAHQIVTQESALQFIASKVKMRKFGTGGSGPTPPKEHEAIDFLTSLM 311

Query: 349  ----PSLHGT-KQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVH 403
                PS  G  K KA ++G MV+ L+QA  G  +CD+RD + NKRLELAG L+     + 
Sbjct: 312  ICHIPSHDGNMKLKAIYVGLMVRRLMQAEMGYTECDDRDFYGNKRLELAGSLM----GLL 367

Query: 404  IAHARKRMAKALQR---DLYGDRTVRPIEY--YLDASILTNGLSRAFSTGAWSHPFKRTE 458
                 KR    L+R   +  G     P++   ++   ++TN +  A +TG W     R E
Sbjct: 368  FEDVFKRFNSELKRIADNSLGKTLAAPLDIVKHMRQDLVTNAMVNAIATGNWIIKRFRME 427

Query: 459  RISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCG 518
            R  G+   L R + +  L  + R     + T KV   R   PS WG +C   TP+GE+CG
Sbjct: 428  R-HGVTQVLSRLSYISVLGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEGESCG 486

Query: 519  LVKNLGVTGLVST-SILEPIFEQLFNSGME-------KLADDASYSLGGKFKVFVDGDWI 570
            LVKNL +   ++T S  +P+   L+NSG+E        L     Y L     VF++G  +
Sbjct: 487  LVKNLALISHITTDSDEKPVIRLLYNSGVEDLQSLHFSLVHSPEYHL-----VFLNGAIV 541

Query: 571  GVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-- 628
            G+  D    VS +R  RR   L   V +  +  Q  V I  D GR+ RP ++V + GK  
Sbjct: 542  GITIDPQRIVSTIRAVRRNGLLSEFVSVSTNAAQRSVYIASDGGRLCRPYIIVTD-GKPR 600

Query: 629  -----IKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHC 683
                 I  L+  +  F+  +D G+IE +   E  D   A          E++     TH 
Sbjct: 601  ITQHDIDELKKGHRIFEDFVDEGLIEYLDVNEMNDASIAV--------YENQIKADTTHL 652

Query: 684  ELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQ 743
            E++   LLG+  G+IP+ +H+ + R  YQ      QA+G    N   R+D+L + L YPQ
Sbjct: 653  EIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-AMGKQAMGTIGYNQQKRIDSLMYLLVYPQ 711

Query: 744  RPLFRT-MISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLER 802
            RPL ++  I  C  +            +L  GQNAI+AV  + GY+ ED+LV+N+ASL+R
Sbjct: 712  RPLVKSKTIEMCNFE------------KLPAGQNAIIAVMSYSGYDIEDALVLNKASLDR 759

Query: 803  GMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQS 862
            G  R    +  K        Q   R     +     +  I +   LD +G  F GA ++S
Sbjct: 760  GYGRCLVYKHAKGTAKKYPNQTFDRLMGPTIE-ATTRKPIYKHQVLDQEGIVFAGARIRS 818

Query: 863  GDIVIGKYA------------DSGA-----------DHSIKLKHTERGMVQKVVLSSNDD 899
              ++I K+              SG            D SI  +       ++V+L+ N+D
Sbjct: 819  KQVMINKHMPIVSLEASAVAQSSGVVQAGNRNVEYKDVSISYRSPVPSYAERVLLTYNED 878

Query: 900  GKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPS 959
              +   V LRQ R P LGDKFSS HGQKGV G +  QE+ PF   G+ PD+++NPH +PS
Sbjct: 879  DAHLIKVVLRQTRRPELGDKFSSRHGQKGVCGLIAQQEDMPFNDLGMCPDMIMNPHGYPS 938

Query: 960  RQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLY 1019
            R T G+L+E   GK        I SG   Y T FA   V  + E+L   GF+  G + L 
Sbjct: 939  RMTVGKLMELLSGKN------AILSGRFHYGTAFAGDQVADVCEELAARGFNYLGKDMLT 992

Query: 1020 DGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEM 1079
             G TG+ + + I+ GP +YQ+L HM  DK+  R+ GP   LTRQP   R R GG++ GEM
Sbjct: 993  SGITGQQLSAYIYFGPIYYQKLKHMVLDKMHARSRGPRAVLTRQPTEGRARDGGLRLGEM 1052

Query: 1080 ERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDS 1139
            ERDCLIA+GA+  L ERL   SD + + +C +C  +              +G +C+ C  
Sbjct: 1053 ERDCLIAYGASMLLMERLMVSSDEFHVDVCSQCGLIG------------YKG-WCQKCRC 1099

Query: 1140 GDDIVKANVPYGAKLLCQELFSMGITLKFD 1169
               +    +PY  KLL QEL SM I  K +
Sbjct: 1100 SRTMATIKIPYACKLLFQELQSMNIVPKIN 1129


>gi|402076059|gb|EJT71482.1| hypothetical protein GGTG_10739 [Gaeumannomyces graminis var. tritici
            R3-111a-1]
          Length = 1158

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 400/1242 (32%), Positives = 575/1242 (46%), Gaps = 185/1242 (14%)

Query: 8    FTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDS--FGET 65
             TDP S      + L  F +          GLV   I+SYN FI + +++  ++     +
Sbjct: 21   LTDPISTAKDKWQLLPAFLKVK--------GLVKQHIDSYNFFINHEIKEIVNANRIVRS 72

Query: 66   IVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEH-DMFPRHARLQNMTYSSR 124
             VE G+              + F  + + KPS         H ++ P   RL++MTY++ 
Sbjct: 73   DVESGF-------------FLEFTDIRVGKPSRAEFTDFKAHNEVSPMECRLRDMTYAAP 119

Query: 125  MKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV- 183
            +KV + +          DK K  R              N+ +GR+P+M+KS  CW+ G  
Sbjct: 120  IKVDIAY--------FRDKKKVIRR-------------NVTLGRMPIMLKSSQCWLSGAT 158

Query: 184  -----EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENK 233
                 +  +C  D GGYFII G EKV + QEQ+   R+ V     +N +  +V   +  +
Sbjct: 159  NSEMEDMNECPLDPGGYFIINGTEKVILIQEQLSKNRVIVEADEKNNIITASVTSSTHER 218

Query: 234  RNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCED 293
            +++  V L    K E I      L+   L   IPI I+  ALG   D EI+ L+    ED
Sbjct: 219  KSKTYVTL----KKERIS-----LNHNTLVEPIPIVIVLKALGGLPDYEIMQLV--AGED 267

Query: 294  CSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKG---TTFPPGE-------STEECM 343
                +  FA   D   +   F +   AL+YV   +K     T  PG        +TEE +
Sbjct: 268  ARYQDD-FAVNFDEATRAGVFTQ-HQALEYVGVRVKAGSIRTKMPGSGGMARRNNTEEGL 325

Query: 344  NTY--------------LFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRL 389
                              +P       KA ++  MV+ +L A    +  D+RD   NKRL
Sbjct: 326  EALANMIIGHVPIVGLDFYP-------KAIYVAMMVRRVLMAAQDFKLVDDRDFVGNKRL 378

Query: 390  ELAGELL----ERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDAS-ILTNGLSRA 444
            ELAG++L    E   K  I   R  + K L++   G     P+      S  +T G++R+
Sbjct: 379  ELAGQMLSLLFEDLFKKFITDLRFNIDKVLRKSNRG-VPFDPLNSITATSGHITAGMNRS 437

Query: 445  FSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWG 504
             S+G WS       R +G+   L R + +  L  + R   Q + T KV   R   PS WG
Sbjct: 438  ISSGNWSVKRFNMNR-AGVTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRALQPSQWG 496

Query: 505  KICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQL---FNSGMEKLADDASYSL--GG 559
             +C   TP+GE CGLVKNL +   ++T   E   +Q     +SG E L + +   +   G
Sbjct: 497  MLCTSDTPEGEACGLVKNLAMMTHITTQFPEEPVKQWILSLDSGAESLINFSGSEMHRPG 556

Query: 560  KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRP 619
             + V V+G    +  +   F  + R  RRR  L   V I  +   S V I  D GRI RP
Sbjct: 557  SYMVNVNGTPFALTANPEEFARKFRTMRRRGFLSPFVSININYHFSTVNIATDEGRICRP 616

Query: 620  LLVVENM------GKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIE 673
             ++V+N         ++ L      F   L+ GI+E +   EE D   A   K       
Sbjct: 617  YIIVQNGVPNVRDEHLEMLRQGRAQFDDFLNKGIVEYLDVNEENDTLVALYEK------- 669

Query: 674  DKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVD 733
            D  P   TH E++   +LG   G+IPF +H+ + R  YQ      QAIG    N   R+D
Sbjct: 670  DVTP-AHTHLEIEPFTILGAVAGLIPFPHHNQSPRNTYQCAM-GKQAIGAIAYNQFNRID 727

Query: 734  TLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSL 793
            TL + L YPQRP+  +   + +      H   LP      GQNA V V  + GY+ ED+L
Sbjct: 728  TLLYTLVYPQRPMVISKTIELI------HYDKLPA-----GQNATVVVMSYSGYDIEDAL 776

Query: 794  VMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVD----SLD 849
            V+N+AS++RG  R +  R + AE     +Q    +  + +   +I    GR      ++D
Sbjct: 777  VLNKASVDRGFGRCQVFRKHTAE-----LQTYANNRSEEIGRPEIDEATGRHTDKNVAID 831

Query: 850  DDGFPFIGANLQSGDIVIGKYA--DSGA-------------DHSIKLKHTERGMVQKVVL 894
             DG   +G  + +G+++I K    D G+             D SI  +  +   + KV++
Sbjct: 832  GDGLATVGYRIHAGEVMIKKLTPIDQGSTGIGNDVGSNDYRDTSISYRTPDPSYIDKVMV 891

Query: 895  SSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINP 954
            S  +       V  RQ R P LGDKFSS HGQKGV+G +  QE+ PF   G+VPDI++NP
Sbjct: 892  SQTEKEHILVKVQTRQTRRPELGDKFSSRHGQKGVVGIIVDQEDMPFQDSGLVPDIIMNP 951

Query: 955  HAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYA--TPFATPSVDAITEQLHRAGFSK 1012
            H FPSR T G+L E   GK        +  G KRY     F T  V+ + E L R GFS 
Sbjct: 952  HGFPSRMTVGKLFECLTGKA------SVVEGEKRYGYGDAFRTHPVEEMGEALVRHGFSW 1005

Query: 1013 WGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFG 1072
             G +    G TGE + + IF GP +YQRL HM +DK+  R  GP   LTRQP   R R G
Sbjct: 1006 EGKDYFTSGITGEPLEAYIFNGPIYYQRLKHMVQDKMHSRAKGPRAILTRQPTEGRSRDG 1065

Query: 1073 GIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGP 1132
            G++ GEMERDCLIA+GA+  L ERL   SD+  + IC++C            G    +G 
Sbjct: 1066 GLRLGEMERDCLIAYGASQLLLERLMLSSDATSIDICQRC------------GLFGYKG- 1112

Query: 1133 YCRICDSGDDIVKANVPYGAKLLCQELFSM--GITLKFDTEF 1172
            YC+ C S  ++    +PY AKLL QEL SM  G+ L+ + EF
Sbjct: 1113 YCQTCKSTREVTAMTMPYAAKLLVQELISMNVGVRLQLEDEF 1154


>gi|449447799|ref|XP_004141655.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Cucumis
            sativus]
          Length = 1158

 Score =  494 bits (1272), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 366/1189 (30%), Positives = 576/1189 (48%), Gaps = 136/1189 (11%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
            F    GLV   ++S+N F+   ++K   +     +E   DPS           +RF  V 
Sbjct: 48   FLKVRGLVKQHLDSFNYFVNTEIKKIVKANDR--IESSTDPS---------IYLRFLDVR 96

Query: 93   LDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYI 152
            + +PS    N   E  + P   RL ++TY++ + V +++                 E + 
Sbjct: 97   IGEPSVTV-NAVSE-TINPHMCRLSDLTYAAPILVDIEYI---------------EESHA 139

Query: 153  QKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVFV 206
            QK     E  +++IGR+P+M++S  C + G ++      G+C  D GGYFIIKG EKV +
Sbjct: 140  QKA--PREKKDVVIGRMPIMLRSRCCVLHGKDEAELARLGECPLDPGGYFIIKGTEKVVL 197

Query: 207  AQEQICLKRLWVSN----SMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFL 262
             QEQ+   R+ +      ++  +V   +E  +++ ++++ +   +  +          F 
Sbjct: 198  IQEQLSKNRIIIDTDKKGNINASVTSSTEATKSKTVIKMENEKIYLQLN--------IFT 249

Query: 263  STEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALK 322
            + +IPI ++  A+G+ S +E+V ++     D     +L  SI +     ++      AL+
Sbjct: 250  TPKIPIMVVLKAMGMESIQEVVQMVG---RDPRYGALLLPSIEECAK--EKIYTQEQALE 304

Query: 323  YVDKLIKGTTF---PP---GESTEECMNTYL--FPSLHGT-KQKARFLGYMVKCLLQAYS 373
            Y++  +K   F   PP   G +     + +L   P        K  ++  M++ ++ A  
Sbjct: 305  YLETKVKKFQFASAPPEKEGRALGILRDVFLANVPVYKNNFHPKCIYVAVMMRRMMDAIL 364

Query: 374  GRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDRTVRPIE 429
             +   D++D   NKRLEL+G+L+    E   K  ++  +K + K L +     R      
Sbjct: 365  SKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTMVSEVKKTIDKLLGKHSRSSRF--DFS 422

Query: 430  YYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYT 489
             +L+++I++ GL R  STG W     R  R  G+   L R + + T+  + R   Q + +
Sbjct: 423  QHLNSNIISFGLERTLSTGNWDVKRFRMHR-KGMSQVLARLSFISTMGHVTRVSPQFEKS 481

Query: 490  GKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEK 548
             KV   R   PS WG +C   TP+GE CGLVKNL +   V+T   E P+    +  G+E 
Sbjct: 482  RKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDQEEGPLISLCYCLGVED 541

Query: 549  LADDASYSL--GGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSE 606
            L   ++  L     F V  +G  +G  +    F + +R  RR  ++   V +  +E Q  
Sbjct: 542  LELLSAEELHTPNSFLVIFNGRILGKHRRPQYFATGMRMLRRAGKIGEFVSVFVNEKQHC 601

Query: 607  VRIFMDAGRILRPLLVVEN-MGKIKSLEGKNY-----TFQALLDHGIIELVGTEEEEDCC 660
            V I  D GR+ RPL++ +  + +IK    K       TF   L  G+IE +   EE +  
Sbjct: 602  VYIASDGGRVCRPLVIADKGVSRIKEYHMKELSDGVRTFDDFLRDGLIEYLDVNEENNAL 661

Query: 661  TAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQA 720
             A          E +   + TH E++   +LG+  G+IP+ +H+ + R  YQ      QA
Sbjct: 662  IAL--------YEGEATPETTHIEIEPFTILGVVAGLIPYPHHNQSPRNTYQCA-MGKQA 712

Query: 721  IGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVA 780
            +G    N   R+DTL + L YPQRPL  T   + +G    G            GQNA VA
Sbjct: 713  MGNIAYNQLRRMDTLLYLLVYPQRPLLTTKTIELVGYDKLGA-----------GQNATVA 761

Query: 781  VNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQS 840
            V  + GY+ ED++VMN++SL+RG  R    + Y + V+ K    +  ++D +V   + + 
Sbjct: 762  VMSYSGYDIEDAIVMNKSSLDRGFGRCIVFKKY-SSVNQK---YENNTADRIVRPNRNED 817

Query: 841  KIGRVDSLDDDGFPFIGANLQSGDIVIGKY----------------ADSGADHSIKLKHT 884
              G +  LDDDG    G  ++  DI + K                 A        K    
Sbjct: 818  FTGNMQILDDDGLAAPGEIIRPNDIYVNKQSPIIMKGSPLPGIPDNAYRPCRQIFKGSEG 877

Query: 885  ERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQ 944
            E  +V +V LS++ +        +RQ R P LGDKFSS HGQKGV G +  QE+FPF+ +
Sbjct: 878  EPTVVDRVALSTDKNDCLCIKFLIRQTRRPELGDKFSSRHGQKGVCGTIVQQEDFPFSER 937

Query: 945  GIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPS-----VD 999
            GI PD+++NPH FPSR T G+++E   GK       G+  G   Y + F  PS     VD
Sbjct: 938  GICPDLIMNPHGFPSRMTVGKMIELLGGKA------GVSCGRFHYGSAFGEPSGHADKVD 991

Query: 1000 AITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHP 1059
            AI+E L + GFS  G + LY G TG  +++ IF+GP +YQ+L HM  DK+  R +GP   
Sbjct: 992  AISETLIKRGFSYNGKDFLYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVM 1051

Query: 1060 LTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVI 1119
            LTRQP   R R GG++ GEMERDCLIA+GA+  ++ERL   SD +++ +CR C  +    
Sbjct: 1052 LTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIYERLMISSDPFEVQVCRVCGLLGYY- 1110

Query: 1120 QRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
                    K++   C  C +GD+I    +PY  KLL QEL SM I  + 
Sbjct: 1111 ------NHKLKTGICSSCKNGDNISTMKLPYACKLLIQELQSMNIVPRL 1153


>gi|315426560|dbj|BAJ48190.1| DNA-directed RNA polymerase subunit B [Candidatus Caldiarchaeum
            subterraneum]
 gi|343485294|dbj|BAJ50948.1| DNA-directed RNA polymerase subunit B [Candidatus Caldiarchaeum
            subterraneum]
          Length = 1117

 Score =  494 bits (1272), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 368/1133 (32%), Positives = 562/1133 (49%), Gaps = 139/1133 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            S   + GLV H + S+N F+K GLQ+  +S  +  ++     +K G        ++FGQV
Sbjct: 16   SNLEDEGLVQHHLRSFNYFVKTGLQQLVNSMSDYEIK-----TKHGT-----VVVKFGQV 65

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
            T+D P+    +  +   ++P  ARL+N+TY + + +K+                     +
Sbjct: 66   TIDIPTKREIDAPNPQPLYPWEARLRNLTYEAPIYIKMSIY------------------F 107

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
              K +   E  N+ +G IPVMVKSD+C +        +  G+   D GGYFII G+E+V 
Sbjct: 108  DGKPIAPPE--NVWVGNIPVMVKSDICPLSKMTHDELLAHGEDPQDPGGYFIINGSERVI 165

Query: 206  VAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVD--MSKFEDIKGGEKVLSVYF-- 261
            V  E +   R+ V+   G      S+ + + +I+        + E     +  + VYF  
Sbjct: 166  VGIEDLAPNRIIVTKKEG-----DSKPQYSAVILSAAHGRQVRVEVSYRKDSPVKVYFSR 220

Query: 262  LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADN--KCDEFRKGRN 319
            +   +P  I+  ALG++ D+EI NLI    E   +L   F      +   +  ++   R 
Sbjct: 221  IYKGVPAIIMLRALGLTKDQEIANLISPLKEVQELLEPSFREAEGVETVEQALDYIGSRI 280

Query: 320  ALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGR 375
            A  Y ++          E  E+ ++T     L  TK    +KA  L  M+  +L+   G 
Sbjct: 281  AFGYAEEYRL-------EKAEQIVDTMFMLHLGTTKAARMKKAVHLCEMIGRVLETSLGL 333

Query: 376  RKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDAS 435
            R+ D+RD + NKRL+L   LL    ++      + +   L+R +   R    I  Y+   
Sbjct: 334  REPDDRDHYANKRLKLESALLTELYRMAFVKLLRDLRYQLER-IIPTRQPISISTYVRHG 392

Query: 436  ILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDA 495
            I++  +  A +TG W  P  R     G+   L R N L TL  LRR +  +       +A
Sbjct: 393  IVSEFVKHAMATGNW--PGGRV----GVTQLLNRTNYLATLSHLRRVQSPLSRGQPHFEA 446

Query: 496  RYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVS-TSILEPIFEQLFNSGMEKLADD-A 553
            R  H +HWG++C   TP+G N GLVKNL ++  VS  +  + + ++LF   +  L +  A
Sbjct: 447  RDLHGTHWGRLCPCETPEGSNAGLVKNLALSAEVSFQANKKELLDRLFQLNVIPLNEIIA 506

Query: 554  SYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDEL--QSEVRIFM 611
                    KVFVDG   G   + +  V+ELRR RR   +   + +         EV I  
Sbjct: 507  KRRPPPNVKVFVDGVLEGYHSNGVMLVNELRRLRREGIISQNINVALYTYGHVQEVVINT 566

Query: 612  DAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGI 665
            D GRI RPL+VV+N         ++ ++ K   F+ L+  GIIE +  EEEE+   A   
Sbjct: 567  DEGRIRRPLIVVQNGQPLLQRQHVELIKRKTSKFRDLVSLGIIEYLDAEEEENAYVAIS- 625

Query: 666  KYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPT 725
                    DK   + TH E+    +LG++  +IP+A H+ + R +Y++   + QA+G   
Sbjct: 626  -------PDKVTNEHTHLEISSFAMLGVTASLIPYAEHNQSPRNVYEA-AMAKQALGVFA 677

Query: 726  TNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHL 785
            +N ++R D+ SH L YPQRP+  T  +D +G        I  RP    GQN +VA+    
Sbjct: 678  SNYALRTDSRSHLLVYPQRPIVTTRTADLIG--------IDKRPL---GQNMVVAILTGK 726

Query: 786  GYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIG-- 843
            GYN ED++V+NR+S+ERG+  S   R Y       E++ ++        FG  +  +   
Sbjct: 727  GYNMEDAVVLNRSSVERGLGLSLSWRIY-------EVEARQTPGGQRDKFGIPEPSVRGY 779

Query: 844  ------RVDSLDDDGFPFIGANLQSGDIVIGKYADS---------------GADHSIKLK 882
                  RV  LD DGF  I +++  G +++G  +                   D S  ++
Sbjct: 780  RGEQFYRV--LDKDGFAHIESDVSGGTVIVGMMSPPRFLEEYQRVPTREMVWRDSSETVQ 837

Query: 883  HTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPC---LGDKFSSMHGQKGVLGFLESQENF 939
             +E G V+ + ++ N +G N  V +  +VRS C   +GDKFSS HGQKGV+G L  QE+ 
Sbjct: 838  PSETGNVENIFITINAEG-NLLVKA--KVRSTCFTEIGDKFSSRHGQKGVVGMLIPQEDM 894

Query: 940  PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVD 999
            P+T  GIVPD++INPHAFPSR T GQL+E+  GK + ++   I  G     TPF   S++
Sbjct: 895  PYTKDGIVPDLLINPHAFPSRMTIGQLIESLAGK-LGSIKAEIVDG-----TPFLGKSLE 948

Query: 1000 AITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHP 1059
             +  +L   GF   G E LY+G TG+++ + +FIG  +YQRL H+  DK+  R  G V  
Sbjct: 949  ELRAELEALGFKSSGRELLYNGATGKILEAEVFIGVVYYQRLHHLVRDKIHARARGQVQM 1008

Query: 1060 LTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKC 1112
            LTRQP   R R GG+KFGEMERDCLIA+GA+  L +RL   SD Y  + C KC
Sbjct: 1009 LTRQPTEGRSRGGGLKFGEMERDCLIAYGASYLLLDRLLEQSDKYTAYFCEKC 1061


>gi|194753345|ref|XP_001958974.1| GF12287 [Drosophila ananassae]
 gi|190620272|gb|EDV35796.1| GF12287 [Drosophila ananassae]
          Length = 1137

 Score =  494 bits (1271), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 373/1198 (31%), Positives = 571/1198 (47%), Gaps = 160/1198 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+S+N FI   ++K   +    +V  G DP        +Y  +R G+ 
Sbjct: 40   AFLQVKGLVKQHIDSFNHFINVDIKKIVRA--NEMVTSGADPL----FYLKYLDVRVGKP 93

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             +D+  F        H+      RL++ TYS+ + V +++   TQ+              
Sbjct: 94   DIDE-GFNITKATTPHE-----CRLRDTTYSAPITVDIEYTRGTQR-------------- 133

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVF 205
            I++        N++IGR+P+M++   C + G  +       +C  D GGYF+++G EKV 
Sbjct: 134  IKR-------NNLLIGRMPLMLRCSNCVLTGKSEFELSKLNECPLDPGGYFVVRGQEKVI 186

Query: 206  VAQEQICLKRLWVSNSMGWT---VAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFL 262
            + QEQ+   ++   +  G     V   +  K++R +V    +SK      G+  L    +
Sbjct: 187  LIQEQLSWNKMLTEDFNGVVQCQVTSSTHEKKSRTLV----ISKH-----GKYYLKHNSM 237

Query: 263  STEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALK 322
            + +IPI ++F ALGV SD+EI+  I     D    N   AS+ +A N    F + R AL 
Sbjct: 238  TDDIPIVVIFKALGVVSDQEIMAHIGI---DSKSQNRFGASLLEAFN-LKVFTQQR-ALD 292

Query: 323  Y------VDKLIKGTTFPPGESTEECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAY 372
            Y      V +    TT  P E   E + T +   +       + KA ++  MV+ ++ A 
Sbjct: 293  YMGSKLVVKRFQSATTKTPAEEARELLLTTILAHVPVDNFNFQMKAIYVSMMVRRVMAAE 352

Query: 373  SGRRKCDNRDDFRNKRLELAGEL-----------LERELKVHIAHARKRMAKALQRDLYG 421
              +   D+RD + NKRLELAG L           +  ELK  IA       KA Q D+  
Sbjct: 353  LDKTLFDDRDYYGNKRLELAGSLISLMFEDLFKRMNWELKT-IADKNIPKVKAAQFDVVK 411

Query: 422  DRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRR 481
                     ++ A+ +T GL  A S+G W+    + ER +G+   L R + +  L  + R
Sbjct: 412  ---------HMRAAQITAGLESAISSGNWTIKRFKMER-AGVTQVLSRLSYISALGMMTR 461

Query: 482  TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQ 540
               Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + E P+   
Sbjct: 462  VNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEEKPVMVL 521

Query: 541  LFNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEI 598
             FN+G+E + + +   +     F VF++G+ +G+  +    V  LR  RR+  + + V +
Sbjct: 522  AFNAGVEDIREVSGNPINNPNVFLVFINGNVLGLTLNHRHLVKNLRYMRRKGRMGSYVSV 581

Query: 599  KRDELQSEVRIFMDAGRILRPLLVVEN---MGKIKSLEGKNY---TFQALLDHGIIELVG 652
                 Q  + I  D GR+ RP ++VE    + K   L+  N     F   L  G+IE + 
Sbjct: 582  HTSYTQRCIYIHTDGGRLCRPYIIVEKCRPLVKQHHLDELNRGIRKFDDFLLDGLIEYLD 641

Query: 653  TEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 712
              EE D   AW  ++    IE++     TH E++   LLG+  G++P+ +H+ + R  YQ
Sbjct: 642  VNEENDSFIAWNEEH----IEERT----THLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQ 693

Query: 713  SQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELY 772
                  QA+G    N   R+D+L + L YPQ P+ ++   +           +    +L 
Sbjct: 694  CAM-GKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVKSKTIE-----------LTNFDKLP 741

Query: 773  NGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRR----S 828
             GQNA VAV  + GY+ ED+L++N+AS++RG  R    ++ K  V     Q   R     
Sbjct: 742  AGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPV 801

Query: 829  SDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHS---------- 878
             D + N       I + D LD DG    G  +Q+  I+I K   +    +          
Sbjct: 802  KDALTN-----KVIFKHDVLDTDGIVAPGEMVQNKQIMINKEMPAVTSMNPLDGQSPQVP 856

Query: 879  -----IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
                 I  K  E   +++V++S+N +      + LRQ R P +GDKFSS HGQKGV G +
Sbjct: 857  YTAVPISYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLI 916

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
              QE+ P+   GI PD+++NPH FPSR T G+ LE   GK       G+  G   Y T F
Sbjct: 917  VEQEDMPYNDLGICPDMIMNPHGFPSRMTVGKTLELLGGKA------GVLEGKFHYGTAF 970

Query: 994  ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
                V  I  +L R GF+  G +  Y G TG  + + I+ GP +YQ+L HM +DK+  R 
Sbjct: 971  GGSKVQDIQAELERHGFNYMGKDFFYSGITGAPLEAYIYSGPVYYQKLKHMVQDKMHARA 1030

Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
             GP   LTRQP   R R GG++ GEMERDCLI++GA+  + ERL   SD++++ +CR C 
Sbjct: 1031 RGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTC- 1089

Query: 1114 NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                        GR     +C  C S   + K ++PY  KLL QEL SM +  K   E
Sbjct: 1090 ------------GRLAYCSWCHFCQSSAYVSKISMPYACKLLFQELTSMNVVPKMILE 1135


>gi|195123595|ref|XP_002006289.1| GI20961 [Drosophila mojavensis]
 gi|193911357|gb|EDW10224.1| GI20961 [Drosophila mojavensis]
          Length = 1136

 Score =  494 bits (1271), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 368/1197 (30%), Positives = 567/1197 (47%), Gaps = 151/1197 (12%)

Query: 28   KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMR 87
            K   +F    GLV   I+S+N FI   ++K   +    IV  G DP        +Y  +R
Sbjct: 36   KLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVRA--NEIVTSGADPL----FYLKYLDVR 89

Query: 88   FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
             G+  +D   F        H+      RL++ TYS+ + V +++   TQ+          
Sbjct: 90   VGKPDIDD-GFNITKATTPHE-----CRLRDTTYSAPISVDIEYTRGTQR---------- 133

Query: 148  REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGA 201
                I++        N++IGR+P+M++   C + G  +       +C  D GGYF+++G 
Sbjct: 134  ----IKR-------NNLLIGRMPLMLRCSNCVLTGKSEFELSKLNECPLDPGGYFVVRGQ 182

Query: 202  EKVFVAQEQICLKRLWVSNSMGWT---VAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLS 258
            EKV + QEQ+   ++   +  G     V   +  K++R +V    +SK      G+  L 
Sbjct: 183  EKVILIQEQLSWNKMLTEDFNGVVQCQVTSSTHEKKSRTLV----LSKH-----GKYYLK 233

Query: 259  VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGR 318
               ++ +IPI ++F ALGV SD+EI+  I     D    N   AS+ +A N    F + R
Sbjct: 234  HNSMTDDIPIVVIFKALGVVSDQEIMAHIGL---DARSQNRFGASLLEAFN-LKIFTQQR 289

Query: 319  NALKY------VDKLIKGTTFPPGESTEECMNTYLFPSL----HGTKQKARFLGYMVKCL 368
             AL Y      V +    TT  P E   E + T +   +       + KA ++  MV+ +
Sbjct: 290  -ALDYMGSKLVVKRFQSATTKTPSEEARELLLTTILAHVPVDNFNFQMKAIYVSLMVRRV 348

Query: 369  LQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPI 428
            + A   +   D+RD + NKRLELAG L+     +      KRM   L+  +  D+ +  +
Sbjct: 349  MAAELDKTLFDDRDYYGNKRLELAGSLIS----LMFEDLFKRMNWELK--MIADKNIPKV 402

Query: 429  EY-------YLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRR 481
            +        ++ A+ +T GL  A S+G W+    + ER +G+   L R + +  L  + R
Sbjct: 403  KAAQFDVVKHMRAAQITAGLESAISSGNWTIKRFKMER-AGVTQVLSRLSYISALGMMTR 461

Query: 482  TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQ 540
               Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + E P+   
Sbjct: 462  VNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVDERPVMTL 521

Query: 541  LFNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEI 598
             +N+G+E + + +   +     F VF++G+ +G+  +    V  LR  RR+  + + V I
Sbjct: 522  AYNAGVEDIREVSGNPINNPHVFLVFINGNVLGLTINQRHLVRNLRYMRRKGRMGSFVSI 581

Query: 599  KRDELQSEVRIFMDAGRILRPLLVVENMG------KIKSLEGKNYTFQALLDHGIIELVG 652
                 Q  + I  D GR+ RP ++VEN         +  L      F   L  G+IE + 
Sbjct: 582  HTSYTQRCIFIHTDGGRLCRPYIIVENQRPLVQQRHLDELMRGVRKFDDFLHDGLIEYLD 641

Query: 653  TEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 712
              EE D   AW         E++     TH E++   LLG+  G++P+ +H+ + R  YQ
Sbjct: 642  VNEENDSFIAWN--------EEQLEPHTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQ 693

Query: 713  SQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELY 772
                  QA+G    N   R+D+L + L YPQ P+ ++   +           +    +L 
Sbjct: 694  C-AMGKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVKSRTIE-----------LTNFDKLP 741

Query: 773  NGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRR----S 828
             GQNA VAV  + GY+ ED+L++N+AS++RG  R    ++ K  V     Q   R     
Sbjct: 742  AGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPV 801

Query: 829  SDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHS---------- 878
             D + N       I + D LD DG    G  +Q+  I+I K   +    +          
Sbjct: 802  KDALTN-----KVIFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSINPLEGQSQVPY 856

Query: 879  ----IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLE 934
                I  K  E   +++V++S+N +      + LRQ R P +GDKFSS HGQKGV G + 
Sbjct: 857  TAVPISYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLIV 916

Query: 935  SQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFA 994
             QE+ PF   GI PD+++NPH FPSR T G+ LE   GK       G+  G   Y T F 
Sbjct: 917  DQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKA------GVLEGKFHYGTAFG 970

Query: 995  TPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNT 1054
                  +  +L R GF+  G +  Y G TG  + + I+ GP +YQ+L HM +DK+  R  
Sbjct: 971  GSKAADVQAELVRHGFNYMGKDFFYSGITGAPLEAYIYSGPVYYQKLKHMVQDKMHARAR 1030

Query: 1055 GPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKN 1114
            GP   LTRQP   R R GG++ GEMERDCLI++GA+  + ERL   SD++++ +CR C  
Sbjct: 1031 GPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTC-- 1088

Query: 1115 VANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                       GR     +C  C S   + K ++PY  KLL QEL SM +  K   E
Sbjct: 1089 -----------GRLAYCSWCHFCQSSAHVSKISMPYACKLLFQELTSMNVVPKLILE 1134


>gi|389624163|ref|XP_003709735.1| DNA-directed RNA polymerase III subunit RPC2 [Magnaporthe oryzae
            70-15]
 gi|351649264|gb|EHA57123.1| DNA-directed RNA polymerase III subunit RPC2 [Magnaporthe oryzae
            70-15]
 gi|440467179|gb|ELQ36417.1| DNA-directed RNA polymerase III subunit RPC2 [Magnaporthe oryzae Y34]
 gi|440480743|gb|ELQ61392.1| DNA-directed RNA polymerase III subunit RPC2 [Magnaporthe oryzae
            P131]
          Length = 1158

 Score =  494 bits (1271), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 393/1234 (31%), Positives = 586/1234 (47%), Gaps = 170/1234 (13%)

Query: 8    FTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDS--FGET 65
             TDP S      + L  F +          GLV   I+S+N FI   +++   +     +
Sbjct: 22   LTDPISTAQDKWQLLPAFLKVK--------GLVKQHIDSFNFFINTEIKEIVKANRIVRS 73

Query: 66   IVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFA-GNGGDEHDMFPRHARLQNMTYSSR 124
             VE G+              + F  + + KP+     +   ++++ P   RL++MTY++ 
Sbjct: 74   DVESGF-------------FLEFTDIRVGKPNRAEYSDIKAQNEVSPMECRLRDMTYAAP 120

Query: 125  MKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVE 184
            +KV + +          DK K  R+             N+ +GR+P+M+KS  CW+ G  
Sbjct: 121  IKVDIAY--------FRDKKKVLRK-------------NVTLGRMPIMLKSSNCWLSGAN 159

Query: 185  KGD------CDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENK 233
              +      C  D GGYFII G EKV + QEQ+   R+ V     +N +  +V   +  +
Sbjct: 160  NAEMEDMNECPLDPGGYFIINGTEKVILIQEQLSKNRVIVEADEKNNVISASVTSSTHER 219

Query: 234  RNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCED 293
            +++  V L    K E I      L+   L   IPI I+  ALG   D EI+ L+    ED
Sbjct: 220  KSKTYVTL----KKERI-----TLAHNTLVEPIPIAIILKALGGLPDHEIIQLV--AGED 268

Query: 294  CSILNILFASIHDADNKCDEFRKGRNALKYVDKLIK---------GTTFPPGESTEECMN 344
                +    +  DA  +   F + + +L+Y+   +K         G   P   + EE + 
Sbjct: 269  ARYQDDFAVNFDDA-ARAGVFTQ-QQSLEYIGSRVKMGSNRFKTPGGQAPRRNNAEEGLE 326

Query: 345  TYL------FPSLH-GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL- 396
                      P L      KA ++  MV+ +L A    +  D+RD   NKRLELAG++L 
Sbjct: 327  ALANMIIGHVPILDLDFYPKACYVAMMVRRVLMAAHDHKLVDDRDFVGNKRLELAGQMLS 386

Query: 397  ---ERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDAS-ILTNGLSRAFSTGAWSH 452
               E   K  +   R  + K L++   G     P+      S  +T G++RA S+G W+ 
Sbjct: 387  LLFEDLFKKFLVDLRFNIDKVLRKSNRG-VAFDPLNSITATSGHITAGMNRAISSGNWTV 445

Query: 453  PFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTP 512
                  R +G+   L R + +  L  + R   Q + T KV   R   PS WG +C   TP
Sbjct: 446  KRFNMNR-AGVTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCTSDTP 504

Query: 513  DGENCGLVKNLGVTGLVSTSILE-PIFEQLF--NSGMEKLADDASYSL--GGKFKVFVDG 567
            +GE CGLVKNL +   ++T   E P+ E +   +SG E L++ +   +   G F + V+G
Sbjct: 505  EGEACGLVKNLALMTHITTHFEEDPVKEWILAMDSGAEALSNFSGSEMHTPGTFVITVNG 564

Query: 568  DWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN-M 626
                +  +   F  + R  RR+ EL   V I  +   + V I  D GRI RP +++EN +
Sbjct: 565  TPFALTWNPEEFCKKFRDTRRKGELSAFVSISINYHFATVNIATDEGRICRPYIIIENGV 624

Query: 627  GKIK-----SLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFT 681
             +IK     SL   +  F   L++GI+E +   EE+D   A   K       D  P   T
Sbjct: 625  QRIKEEHLESLRQGDKDFDYFLNNGIVEYLDVNEEQDTLVALYEK-------DVTP-AHT 676

Query: 682  HCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFY 741
            H E++   +LG   G+IPF +H+ + R  YQ      QAIG    N   R+DTL + L Y
Sbjct: 677  HLEIEPFTILGAVAGLIPFPHHNQSPRNTYQCAM-GKQAIGAIAYNQFNRIDTLLYTLVY 735

Query: 742  PQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLE 801
            PQRP+  T   + +      H   LP      GQNA V V  + GY+ ED+LV+N+AS +
Sbjct: 736  PQRPMVITKTIELI------HYDKLPA-----GQNATVVVMSYSGYDIEDALVLNKASCD 784

Query: 802  RGMFRSEHIRSYKAEV----DNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIG 857
            RG  R +  R + AE+    +NK  ++     D+    GK   K   +DS   DG   +G
Sbjct: 785  RGFGRCQVFRKHTAELQTYANNKSEKISGPEIDERT--GKPAEKYAAIDS---DGLARVG 839

Query: 858  ANLQSGDIVIGKYA--DSGA-------------DHSIKLKHTERGMVQKVVLSSNDDGKN 902
              + SG++++ K    D G+             + S+  + +    + KV++S  +    
Sbjct: 840  YRIHSGEVMLRKLTPIDQGSTGIGNDVGSNDYRETSLSYRVSNPSYIDKVMVSQTEKEHI 899

Query: 903  FSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQT 962
             + V  RQ R P LGDKFSS HGQKGV+G +  QE+ PF   G+VPDI++NPH FPSR T
Sbjct: 900  LAKVQTRQTRRPELGDKFSSRHGQKGVVGIIVEQEDMPFADSGLVPDIIMNPHGFPSRMT 959

Query: 963  PGQLLEAALGKGIAALGKGICSGLKRYA--TPFATPSVDAITEQLHRAGFSKWGTERLYD 1020
             G+L E   GK        I  G +RY     F +  V+ + + L   GFS  G +    
Sbjct: 960  VGKLFECLTGKA------SIVEGNRRYGYGDAFRSHPVEEMGKALIERGFSWEGKDYFTS 1013

Query: 1021 GRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEME 1080
            G TGE + + +F GP +YQRL HM +DK+  R  GP   LTRQP   R R GG++ GEME
Sbjct: 1014 GITGEPLEAYLFNGPIYYQRLKHMVQDKMHSRAKGPRAILTRQPTEGRSRDGGLRLGEME 1073

Query: 1081 RDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSG 1140
            RDCLIA+GA+  L ERL   SD+ ++ IC++C            G    +G YC+ C S 
Sbjct: 1074 RDCLIAYGASQLLLERLMLSSDATKIDICQRC------------GLFGYKG-YCQTCKST 1120

Query: 1141 DDIVKANVPYGAKLLCQELFSM--GITLKFDTEF 1172
             ++ +  +PY AKLL QEL SM  G+ L  + EF
Sbjct: 1121 KEVTEMTMPYAAKLLVQELISMNVGVRLVLEDEF 1154


>gi|408402778|ref|YP_006860761.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrososphaera
            gargensis Ga9.2]
 gi|300521500|gb|ADK25961.1| RNA polymerase B [Candidatus Nitrososphaera gargensis]
 gi|408363374|gb|AFU57104.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrososphaera
            gargensis Ga9.2]
          Length = 1116

 Score =  493 bits (1270), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 372/1189 (31%), Positives = 579/1189 (48%), Gaps = 156/1189 (13%)

Query: 38   GLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPS 97
            G+    +NSYNEF++ GLQ   D  GE  +E    P K          ++ G++ L +P 
Sbjct: 20   GVARQHLNSYNEFMERGLQSIIDEVGEIEIETAEYPYK----------IKLGKIKLQQPR 69

Query: 98   FFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVL 157
                +G   H + P  ARL+N+TY+S   V ++  V    ++   +F             
Sbjct: 70   IMELDGSITH-VAPMEARLRNLTYAS--PVMLECSVVEDGKILESRF------------- 113

Query: 158  SDETTNIIIGRIPVMVKSDLCWM------KGVEKGDCDFDHGGYFIIKGAEKVFVAQEQI 211
                  I IG +PVMVKS+ C +      K +E G+   D GGYFII G+E+V V  E +
Sbjct: 114  ------IHIGDMPVMVKSNTCILHNLPESKLIEFGEDPRDPGGYFIINGSERVIVGLEDL 167

Query: 212  CLKRLWV-SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDI--KGGEKVLSVYFLSTEIPI 268
               ++ V +     T+ YK++   + +  R    +K E +    G  V  +     +IP+
Sbjct: 168  SYNKIIVDAEEATGTLLYKAKVYSSIVGYR----AKLELVMRPDGSIVTKIPGSPVDIPL 223

Query: 269  WILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLI 328
              L  ALG+ SDK+I        +  S+   +   +  +  K  +    R+A+ Y+ K I
Sbjct: 224  ITLIRALGLESDKDI-------ADSVSLNETIQDELEPSFEKAGDVNTSRDAIVYISKRI 276

Query: 329  KGTTFPPG-------ESTEECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRRK 377
                  PG       +  E  ++  L P +        +KA FLG     L++   G   
Sbjct: 277  A-----PGMLEEFQIKRAETLLDWGLLPHIGKNPDNRHEKALFLGEAASKLIELKLGWID 331

Query: 378  CDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASIL 437
             D++D + NK ++ AG++L    +    +  + M   L+R     R +  +   +   I+
Sbjct: 332  ADDKDHYGNKVIKFAGQMLADLFRTAFRNLIRDMKYQLERS-GQKRGINAVAAAVRPGIV 390

Query: 438  TNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARY 497
            ++ L+ A +TG W        R+ G+   L R N + T+  LRR +  +  +    +AR 
Sbjct: 391  SDKLNNAIATGNWGR-----GRV-GVTQLLDRTNYMSTISHLRRIQSPLSRSQPNFEARD 444

Query: 498  PHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEP-IFEQLFNSGMEKLADDASYS 556
             H +H+G+IC   TP+G NCGLVKNL ++ ++S ++    + E+L+  G++ + D     
Sbjct: 445  LHATHFGRICPAETPEGSNCGLVKNLALSAIISVNVQSAEVTEKLYELGVQNVEDAREDL 504

Query: 557  LGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSE-----VRIFM 611
                 +VFVDG  IG  +        LR  RR  ++   V I     Q+E     + I  
Sbjct: 505  RESGTRVFVDGRLIGYVEKGEHLSDTLRSMRRSGKIHPHVGIYLYSSQNENATKRLYISC 564

Query: 612  DAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWG 664
            +AGR+LRPL+V+ + GK       I+ +  K  ++  LL  G+IELV   EEE+C  A  
Sbjct: 565  NAGRVLRPLVVLRD-GKPLVTNEVIEKVSKKFLSWNDLLYMGVIELVDANEEENCYVAID 623

Query: 665  IKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFP 724
             K L       +P K TH E+  S +LG+   IIP+  H+ + R  Y+S   + Q++GF 
Sbjct: 624  PKKL-------EP-KHTHLEIFPSAILGVGASIIPYPEHNQSPRNTYES-AMAKQSLGFS 674

Query: 725  TTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVH 784
            T   +       H + YPQ P+  T   + LG        +  RP    GQNA+VAV   
Sbjct: 675  TPLMNASTYVRQHFMLYPQTPVVSTKAINLLG--------LEDRP---TGQNAVVAVLPF 723

Query: 785  LGYNQEDSLVMNRASLERGMFRSEHIRSYKAEV--------DNKEMQVKRRSSDDMVNFG 836
             GYN ED++V N++S++RG+ R+   R Y+AE         DN E+        D    G
Sbjct: 724  EGYNIEDAVVFNKSSVDRGLGRTFFYRIYEAEAKQYPGGMKDNFEL-----PQPDANIRG 778

Query: 837  KIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSG---------------ADHSIKL 881
                K  R+  L+ DG     A +  GDI+IG+ +                   D S+ +
Sbjct: 779  YRGEKAYRL--LEQDGAIMHEAVVNGGDILIGRTSPPRFMEEYKEFEVKGPYRRDTSVGV 836

Query: 882  KHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPF 941
            + +E G+V  V+++ + +G     + +R +R P +GDKF+S HGQKGV+G L +QE+ P+
Sbjct: 837  RPSENGVVDTVIVTQSVEGGKMYKIRVRDMRIPEIGDKFASRHGQKGVVGMLVNQEDVPY 896

Query: 942  TIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAI 1001
            T  G+VPDI+INPHAFPSR T GQ +E+  GK  +  G+ I  G     + F     D I
Sbjct: 897  TEDGVVPDIMINPHAFPSRMTVGQFMESLGGKAASLRGR-IVDG-----SAFLGEKGDDI 950

Query: 1002 TEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLT 1061
               + + GF   G E +YDGRTG    + ++IG  +YQ+L HM  DK+  R  G V  LT
Sbjct: 951  KTAMEQYGFKYTGKETMYDGRTGRKFPADVYIGVVYYQKLHHMVADKIHSRARGQVQMLT 1010

Query: 1062 RQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVA--NVI 1119
            +QP   R R GG++FGEMERDCLIA+GA+  L +RL   SD  ++++C +C  +A  +V 
Sbjct: 1011 KQPTEGRARGGGLRFGEMERDCLIAYGASMMLKDRLLEESDKAEVNVCERCGLLAYYDVK 1070

Query: 1120 QRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
            QR     R +    CR+C     I    + Y  KLL QE+ S+ +  + 
Sbjct: 1071 QR-----RYI----CRVCGEKAKISSVVIAYAFKLLLQEMMSLNVAPRL 1110


>gi|195024375|ref|XP_001985862.1| GH20856 [Drosophila grimshawi]
 gi|193901862|gb|EDW00729.1| GH20856 [Drosophila grimshawi]
          Length = 1137

 Score =  493 bits (1269), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 368/1199 (30%), Positives = 572/1199 (47%), Gaps = 154/1199 (12%)

Query: 28   KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMR 87
            K   +F    GLV   I+S+N FI   ++K   +    IV  G DP        +Y  +R
Sbjct: 36   KLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVRA--NEIVTSGADPL----FYLKYLDVR 89

Query: 88   FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
             G+  +D   F        H+      RL++ TYS+ + V +++   TQ+          
Sbjct: 90   VGKPDIDD-GFNITKATTPHE-----CRLRDTTYSAPISVDIEYTRGTQR---------- 133

Query: 148  REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGA 201
                I++        N++IGR+P+M++   C + G  +       +C  D GGYF+++G 
Sbjct: 134  ----IKR-------NNLLIGRMPLMLRCSNCVLTGKSEFELSKLNECPLDPGGYFVVRGQ 182

Query: 202  EKVFVAQEQICLKRLWVSNSMGWT---VAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLS 258
            EKV + QEQ+   ++   +  G     V   +  K++R +V    +SK      G+  L 
Sbjct: 183  EKVILIQEQLSWNKMLTEDFNGVVQCQVTSSTHEKKSRTLV----LSKH-----GKYYLK 233

Query: 259  VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGR 318
               ++ +IPI ++F ALGV SD+EI+  I     D    N   AS+ +A N    F + R
Sbjct: 234  HNSMTDDIPIVVIFKALGVVSDQEIMTHIGL---DARSQNRFGASLLEAFN-LKVFTQQR 289

Query: 319  NALKY------VDKLIKGTTFPPGESTEECMNTYLFPSL----HGTKQKARFLGYMVKCL 368
             AL Y      V +    T   P E   E + T +   +       + KA ++  MV+ +
Sbjct: 290  -ALDYMGSKLVVKRFQSATNKTPSEEARELLLTTILAHVPVDNFNFQMKAIYVSLMVRRV 348

Query: 369  LQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPI 428
            + A   +   D+RD + NKRLELAG L+     +      KRM   L+  +  D+ +  +
Sbjct: 349  MAAELDKTLFDDRDYYGNKRLELAGSLMS----LMFEDLFKRMNWELK--MIADKNIPKV 402

Query: 429  EY-------YLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRR 481
            +        ++ A+ +T GL  A S+G W+    + ER +G+   L R + +  L  + R
Sbjct: 403  KAAQFDVVKHMRAAQITVGLESAISSGNWTIKRFKMER-AGVTQVLSRLSYISALGMMTR 461

Query: 482  TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQ 540
               Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + E P+   
Sbjct: 462  VNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVDERPVMTL 521

Query: 541  LFNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEI 598
             +N+G+E + + +   +     F VF++G+ +G+  +    V  LR  RR+  + + V I
Sbjct: 522  AYNAGVEDIREVSGNPMNNPHVFLVFINGNVLGLTINQKHLVRNLRYMRRKGRMGSFVSI 581

Query: 599  KRDELQSEVRIFMDAGRILRPLLVVENMGKI-------KSLEGKNYTFQALLDHGIIELV 651
                 Q  + I  D GR+ RP ++V+NM  +       + L G    F   L  G+IE +
Sbjct: 582  HTSYTQRCIFIHTDGGRLCRPYIIVDNMRPLVEQRHLDELLRGIR-KFDDFLHDGLIEYL 640

Query: 652  GTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLY 711
               EE D   AW  +++       +P+  TH E++   LLG+  G++P+ +H+ + R  Y
Sbjct: 641  DVNEENDSFIAWNEEHI-------EPLT-THLEIEPFTLLGVCAGLVPYPHHNQSPRNTY 692

Query: 712  QSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPEL 771
            Q      QA+G    N   R+D+L + L YPQ P+ ++   +           +    +L
Sbjct: 693  QC-AMGKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVKSRTIE-----------LTNFDKL 740

Query: 772  YNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRR---- 827
              GQNA VAV  + GY+ ED+L++N+AS++RG  R    ++ K  V     Q   R    
Sbjct: 741  PAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGP 800

Query: 828  SSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHS--------- 878
              D + N       I + D LD DG    G  +Q+  I+I K   +    +         
Sbjct: 801  VKDALTN-----KVIFKHDVLDTDGIVAPGEMVQNKQIMINKEMPAVTSINPLEGQSPQV 855

Query: 879  ------IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGF 932
                  I  K  E   +++V++S+N +      + LRQ R P +GDKFSS HGQKGV G 
Sbjct: 856  PYTAVPISYKGPEPSYIERVMVSANSEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGL 915

Query: 933  LESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATP 992
            +  QE+ PF   GI PD+++NPH FPSR T G+ LE   GK       G+  G   Y T 
Sbjct: 916  IVDQEDMPFNDYGICPDMIMNPHGFPSRMTVGKTLELLGGKA------GVLEGKFHYGTA 969

Query: 993  FATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFR 1052
            F       +  +L R GF+  G +  Y G TG  + + I+ GP +YQ+L HM +DK+  R
Sbjct: 970  FGGSKAADVQAELVRHGFNYMGKDFFYSGITGGPLEAYIYSGPVYYQKLKHMVQDKMHAR 1029

Query: 1053 NTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKC 1112
              GP   LTRQP   R R GG++ GEMERDCLI++GA+  + ERL   SD++++ +CR C
Sbjct: 1030 ARGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTC 1089

Query: 1113 KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                         GR     +C  C S   + K ++PY  KLL QEL SM +  K   E
Sbjct: 1090 -------------GRLAYCSWCHFCQSSAHVSKISMPYACKLLFQELTSMNVVPKLILE 1135


>gi|418204386|gb|AFX61747.1| RNA polymerase II second-largest subunit, partial [Ascosphaera
            aggregata]
          Length = 1109

 Score =  493 bits (1269), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 354/1134 (31%), Positives = 549/1134 (48%), Gaps = 160/1134 (14%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RY 83
            C     SFF   GLVS Q++S++EF    +Q+  +  G+  ++   +P +        R 
Sbjct: 11   CWTVISSFFETKGLVSQQLDSFDEFATVTMQELVEEQGQVTLDQTLNPDEDEVDPVVVRR 70

Query: 84   ASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT-QKRVTSD 142
              ++FG V+L +PS   G+G     M P+ ARL+N+TYSS M +K++ ++   ++++ S 
Sbjct: 71   YELKFGTVSLARPSMTEGDGATSV-MLPQEARLRNLTYSSPMYLKIRKRISEGREKLLSQ 129

Query: 143  KF-------------KTGREQYIQKEVLSDETT--NIIIGRIPVMVKSDLCWMKGVEK-- 185
            +              K    Q+ +K +  DE    +I IG++PVM+KS  C +K + +  
Sbjct: 130  RDEDEEEEEDEDLRAKGTYLQWAEKPLKEDEPAEESIFIGKMPVMLKSRYCILKDLNEQA 189

Query: 186  ----GDCDFDHGGYFIIKGAEKVFVAQEQ-----ICLKRLWVSNSMGWTVAYKSENKRNR 236
                 +C +D GGYFII G+EKV +AQE+     + + +    +   +    +S  ++  
Sbjct: 190  LYNWNECPYDSGGYFIINGSEKVLIAQERSAGNIVQIFQKAPPSPTPYIAEIRSAVEKGS 249

Query: 237  LIVRLVDMSKFE------------DIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIV 284
             I+  + +  F             D  G     ++ ++  +IPI I+F ALGV SD++I+
Sbjct: 250  RILSQLSIKLFSKTFKATSAATGRDSNGPMIKSTLPYIRDDIPIMIVFRALGVVSDEDIL 309

Query: 285  NLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES-----T 339
            N I +   D  +L +L  +I      C   ++   AL ++ K  +GT     +       
Sbjct: 310  NHICYDPNDLPMLELLKPTIQ----TCLCIQEREVALDFIAK--RGTHQSMAQDKRIRFA 363

Query: 340  EECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGEL 395
             + M     P +  ++    +KA F GYM+  LLQ   GRR  D+RD F  KRL+LAG L
Sbjct: 364  RDIMQKEFLPHISQSEGSETRKAFFFGYMIHKLLQCALGRRDVDDRDHFGKKRLDLAGPL 423

Query: 396  LERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFK 455
            L    +       K + + +QR +  +R +  +   +  + L+ GL  A +TG W    K
Sbjct: 424  LAGLFRTLFMRLTKDLYRYVQRCVETNRQLH-LNIGIKTATLSGGLKYALATGNWGEQKK 482

Query: 456  RTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGE 515
                 +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+
Sbjct: 483  AASSKAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQ 542

Query: 516  NCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCK 574
             CGLVKNL +   ++  S    I E L +  ME L +          KVF++G W+GV +
Sbjct: 543  ACGLVKNLSLMCTITVGSGTAGIIEFLISQHMEVLEEFEPQVSPDVTKVFLNGVWVGVHR 602

Query: 575  DSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN--------- 625
            D    VS+++  RR+  LP +  + RD    E +IF DAGR+ RPL VV+N         
Sbjct: 603  DPSHLVSKVQNLRRQNLLPYETSLVRDIRDREFKIFTDAGRVCRPLFVVDNNPSSERCGS 662

Query: 626  ----MGKIKSLEG---------------KNYTFQALLDHGIIELVGTEEEEDCCTAWGIK 666
                   I+ LE                + Y +Q L++ G+IE V  EEEE        +
Sbjct: 663  LALTKDHIRKLEADKDLPPDLDPEDRRQRYYGWQGLVNSGVIEYVDAEEEETIMIVMTPE 722

Query: 667  ------------------YLLKDIEDKKPI-----KFTHCELDMSFLLGLSCGIIPFANH 703
                              YL  +   + P       +THCE+  S +LG+   IIPF +H
Sbjct: 723  DLDFQKQVRQGARPEDDSYLDPNRRVRNPFTNKVHSYTHCEIHPSMILGICASIIPFPDH 782

Query: 704  DHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHN 763
            + + R  YQS     QA+G   TN   R++T+S+ L+YPQ+PL  T   +          
Sbjct: 783  NQSPRNTYQS-AMGKQAMGVFLTNFDQRMETMSNILYYPQKPLATTRSME---------- 831

Query: 764  HILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYK--------A 815
              L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R Y         A
Sbjct: 832  -FLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRCYTDSEKKIGVA 890

Query: 816  EVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---- 871
             V+  E   K  +         ++ K    D LD DG   +G ++   DI+IGK A    
Sbjct: 891  VVEKFEYPSKEET---------LRMKNHPYDKLDHDGIAAVGMHVSGNDIIIGKTAPLAP 941

Query: 872  -----------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKF 920
                        +  D S +L+ TE G V +V++S++ D   F  V +R  + P +GDKF
Sbjct: 942  ESEELGQRTKQHTKLDVSTQLRSTENGHVDQVLVSTSSDDLKFVKVRMRTTKIPQIGDKF 1001

Query: 921  SSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGK 980
            +S HGQKG +G    QE+ PFT +G+ PD++INPHA PSR T   L+E  L K ++AL  
Sbjct: 1002 ASRHGQKGTIGITYCQEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQLSK-VSAL-- 1058

Query: 981  GICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIG 1034
                G +  ATPF   +VD+++  L   G+   G E +Y+G TG  + + +F+G
Sbjct: 1059 ---RGFEGDATPFTDVTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLG 1109


>gi|195153847|ref|XP_002017835.1| GL17093 [Drosophila persimilis]
 gi|194113631|gb|EDW35674.1| GL17093 [Drosophila persimilis]
          Length = 1137

 Score =  493 bits (1268), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 368/1194 (30%), Positives = 566/1194 (47%), Gaps = 152/1194 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+S+N FI   ++K   +    +V  G DP            +++  V
Sbjct: 40   AFLQVKGLVRQHIDSFNHFINVDIKKIVRA--NELVTSGADP---------LFYLKYLDV 88

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             + KP    G    +    P   RL++ TYSS + V +++   TQ+              
Sbjct: 89   RVGKPDIDDGYNITKATT-PHECRLRDTTYSSPITVDIEYTRGTQR-------------- 133

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVF 205
            I++        N++IGR+P+M++   C + G  +       +C  D GGYF+++G EKV 
Sbjct: 134  IKR-------NNLLIGRMPLMLRCSNCVLTGKSEFELSKLNECPLDPGGYFVVRGQEKVI 186

Query: 206  VAQEQICLKRLWVSNSMGWT---VAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFL 262
            + QEQ+   ++   +  G     V   +  K++R +V    +SK      G   L    +
Sbjct: 187  LIQEQLSWNKMLTEDFNGVVQCQVTSSTHEKKSRTLV----LSKH-----GRYYLKHNSM 237

Query: 263  STEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALK 322
            + +IPI ++F ALG+ SD+EI+  I     D    N   AS+ +A N    F + R AL 
Sbjct: 238  TDDIPIVVIFKALGIVSDQEIMAHIGI---DTKSQNRFGASLLEAFN-LKVFTQQR-ALD 292

Query: 323  Y------VDKLIKGTTFPPGESTEECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAY 372
            Y      V +    TT  P E   E + T +   +       + KA ++  MV+ ++ A 
Sbjct: 293  YMGSKLVVKRFQSATTKTPAEEARELLLTTILAHVPVDNFNFQMKAIYVSMMVRRVMSAE 352

Query: 373  SGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEY-- 430
              +   D+RD + NKRLELAG L+     +      KRM   L+  +  D+ +  ++   
Sbjct: 353  LDKTLFDDRDYYGNKRLELAGSLIS----LMFEDLFKRMNWELK--MIADKNIPKVKAAQ 406

Query: 431  -----YLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQ 485
                 ++ A+ +T GL  A S+G W+    + ER +G+   L R + +  L  + R   Q
Sbjct: 407  FDVVKHMRAAQITAGLESAISSGNWTIKRFKMER-AGVTQVLSRLSYISALGMMTRVNSQ 465

Query: 486  VQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNS 544
             + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + E P+    FN+
Sbjct: 466  FEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERPVMILAFNA 525

Query: 545  GMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
            G+E + + +   +     F VF++G+ +G+  +    V  LR  RR+  + + V +    
Sbjct: 526  GVEDIREVSGNPINNPNVFLVFINGNVLGLTLNHKHLVRNLRYMRRKGRMGSFVSVHTSY 585

Query: 603  LQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIELVGTEEE 656
             Q  + I  D GR+ RP ++VE          +  LE     F   L  G+IE +   EE
Sbjct: 586  TQRCIYIHTDGGRLCRPYIIVEKRRPRVKQFHLDELERGVRKFDDFLLDGLIEYLDVNEE 645

Query: 657  EDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKH 716
             D   AW  ++    IE+      TH E++   LLG+  G++P+ +H+ + R  YQ    
Sbjct: 646  NDSFIAWNEEH----IEEGT----THLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAM- 696

Query: 717  SSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQN 776
              QA+G    N   R+D+L + L YPQ P+ +T   +           +    +L  GQN
Sbjct: 697  GKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVKTKTIE-----------LTNFDKLPAGQN 745

Query: 777  AIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRR----SSDDM 832
            A VAV    GY+ ED+L++N+AS++RG  R    ++ K  V     Q   R      D +
Sbjct: 746  ATVAVMSFSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPVKDAL 805

Query: 833  VNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHS-------------- 878
             N       I + D LD DG    G  + +  I+I K   +    +              
Sbjct: 806  TN-----KVIFKHDVLDTDGIVAPGEQILNKQIMINKEMPAVTSLNPLEGQSTQVPYTAV 860

Query: 879  -IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQE 937
             I  K  E   V++V++S+N +      + LRQ R P +GDKFSS HGQKGV G +  QE
Sbjct: 861  PISYKGPEPSYVERVMVSANSEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLIVDQE 920

Query: 938  NFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPS 997
            + P+   GI PD+++NPH FPSR T G+ LE   GK       G+  G   Y T F    
Sbjct: 921  DMPYNDSGICPDMIMNPHGFPSRMTVGKTLELLGGKA------GVLEGKFHYGTAFGGSK 974

Query: 998  VDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPV 1057
            V  I  +L R GF+  G +  Y G TG  +++ I+ GP +YQ+L HM +DK+  R  GP 
Sbjct: 975  VGDIQAELERHGFNYMGKDFFYSGITGAPLQAYIYSGPVYYQKLKHMVQDKMHARARGPK 1034

Query: 1058 HPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVAN 1117
              LTRQP   R R GG++ GEMERDCLI++GA+  + ERL   SD++++ +CR C     
Sbjct: 1035 AVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTC----- 1089

Query: 1118 VIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                    GR     +C  C S   + K ++PY  KLL QEL SM +  K   E
Sbjct: 1090 --------GRLAYCSWCHFCQSSAHVSKISMPYACKLLFQELTSMNVVPKMILE 1135


>gi|310798473|gb|EFQ33366.1| RNA polymerase Rpb2 [Glomerella graminicola M1.001]
          Length = 1151

 Score =  493 bits (1268), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 386/1208 (31%), Positives = 583/1208 (48%), Gaps = 162/1208 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN F++N +++   +    I+    + S      W    + F  +
Sbjct: 35   AFLKVKGLVKQHIDSYNFFVENEIKEIVRA--NRIIRSDVNSSF-----W----LEFTDI 83

Query: 92   TLDKPSFFAGNG-GDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
             +++PS    N    ++++ P   RL++MTY++ + V + +          DK K  R+ 
Sbjct: 84   RVERPSRVDFNDIRAQNEVTPMECRLRDMTYAAPIMVDIAY--------IRDKSKIVRK- 134

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGAEKV 204
                        N+ +GR+PVM+KS +C + G    +      C  D GGYFII G EKV
Sbjct: 135  ------------NVPLGRLPVMLKSSICRLGGANNAEMSRMNECPLDPGGYFIINGTEKV 182

Query: 205  FVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFE-------DIKGGEKVL 257
             + QEQ+   R+ V             +++N +I   V  S  E        +K    +L
Sbjct: 183  ILIQEQLSKNRVIVE-----------ADEKNSVITASVTSSTHERKSKTYVTLKKDRILL 231

Query: 258  SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG 317
            +   L   IPI I+  ALG  +D EI+ L+     D       F    +   K   + + 
Sbjct: 232  TANILVEGIPIVIILKALGGLTDYEIMQLV---AGDNGKYQDEFLVQFEEATKAGVYTQ- 287

Query: 318  RNALKYVDKLIK-GTTFPPGES------TEECMNTYL-----FPSLHGTK--QKARFLGY 363
            + AL+Y+   +K G +  P  +       EE ++           + G     KA ++ +
Sbjct: 288  QQALEYIGARVKMGKSRVPFAAQVRRNHVEEALDALANLIIAHVPIEGLDFYPKAIYVAF 347

Query: 364  MVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDL 419
            M + +L A +     D+RD   NKRLELAG+LL    E   K    + +  + K L++D 
Sbjct: 348  MTRRVLMAQNDPSLVDDRDFVGNKRLELAGQLLSLLFEDLFKQFCGNVKSSIDKVLKKD- 406

Query: 420  YGDRTVRPIEYYL----DASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQT 475
              +R V P++        A+++  G++RA  TG W+       R +G+   L R + +  
Sbjct: 407  --NRAV-PLDAVNMISNHANMIGQGINRAIQTGNWTVKRFNMNR-AGVTHVLSRLSYISA 462

Query: 476  LVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE 535
            L  + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T++ E
Sbjct: 463  LGMMTRISSQFEKTRKVSGPRALQPSQWGMLCTSDTPEGEACGLVKNLALMTHITTNVEE 522

Query: 536  -PIFEQLF--NSGMEKLADDASYSLG--GKFKVFVDGDWIGVCKDSLSFVSELRRKRRRK 590
             P+   +F  ++G+E + + +   +     + + ++G    + +    F  + R  RRR 
Sbjct: 523  APVKRWVFTLDAGVEPIRNFSGGEMHRETSYVIHINGTPFALTRYPKRFAGKFRTMRRRG 582

Query: 591  ELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALL 643
             +   V I  +   + V I  D GRI RP ++V N GK       ++ L+    TF   L
Sbjct: 583  WISPFVSIHINNHFNAVHIATDEGRICRPYIIVRN-GKPKLKEEHLRLLQLGRATFDDFL 641

Query: 644  DHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANH 703
             HGI+E +   EE D   A   K       D  P+  TH E++   +LG   G+IPF +H
Sbjct: 642  THGIVEYLDVNEENDTLVALYEK-------DVTPLT-THMEIEPFTVLGAVAGLIPFPHH 693

Query: 704  DHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHN 763
            + + R  YQ      QAIG    N   R+DTL + L YPQRP+   +IS  +    Y   
Sbjct: 694  NQSPRNTYQC-AMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPM---VISKTIQLVNYD-- 747

Query: 764  HILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQ 823
                  +L  GQNA V V  + GY+ ED+LV+N+AS +RG  R +  R Y AE+  K   
Sbjct: 748  ------KLPAGQNATVIVMSYSGYDIEDALVLNKASCDRGFGRCQVFRKYTAEL-QKYPN 800

Query: 824  VKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA--DSGA------ 875
             +R    D VN      +  + ++LDDDG   +G  + SG+++I K    D+G+      
Sbjct: 801  GRRERIGDPVN--DENGRTTKHEALDDDGLAIVGYKVNSGEVMIKKETPLDTGSTGIGMD 858

Query: 876  -------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKG 928
                   D SI  +  +   + KV++S  +       V  RQ R P LGDKFSS HGQKG
Sbjct: 859  RGPSEFRDSSISYRIADPAYIDKVMVSHTERETMVVKVQTRQTRRPELGDKFSSRHGQKG 918

Query: 929  VLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKR 988
            V+G +  QE+ PF+  G+VPDI++NPH FPSR T G+LLE   GK        +  G K 
Sbjct: 919  VVGIIVDQEDLPFSDTGLVPDIIMNPHGFPSRMTVGKLLECLTGKA------SVLDGRKD 972

Query: 989  YA--TPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSE 1046
            Y     F +  ++ ++  L   GFS  G +    G TGE + + IF GP +YQRL HM +
Sbjct: 973  YGFGDAFRSHPLEQMSAALVDHGFSWEGKDYFTSGITGEPLEAYIFNGPIYYQRLKHMVQ 1032

Query: 1047 DKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQM 1106
            DK+  R+ GP   LTRQP   R R GG++ GEMERDCLIA+GA+  L ERL   SD  Q+
Sbjct: 1033 DKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMISSDGTQI 1092

Query: 1107 HICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSM--GI 1164
             IC++C            G    +G YC  C S  ++ +  +PY AKLL QEL SM  G+
Sbjct: 1093 DICQQC------------GLFGYKG-YCHTCKSTREVTQMTMPYAAKLLVQELISMNVGV 1139

Query: 1165 TLKFDTEF 1172
             L+ + EF
Sbjct: 1140 RLQLEDEF 1147


>gi|254573076|ref|XP_002493647.1| Second-largest subunit of RNA polymerase III [Komagataella pastoris
            GS115]
 gi|238033446|emb|CAY71468.1| Second-largest subunit of RNA polymerase III [Komagataella pastoris
            GS115]
 gi|328354525|emb|CCA40922.1| DNA-directed RNA polymerase II subunit B [Komagataella pastoris CBS
            7435]
          Length = 1158

 Score =  493 bits (1268), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 369/1195 (30%), Positives = 580/1195 (48%), Gaps = 148/1195 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++S+N F+   L+K   +  + + +   DP    E   +Y  +R G  
Sbjct: 50   AFLQVKGLVKQHLDSFNYFVDKDLKKIIKANEKVLSD--VDP----EFYLKYLDIRVGYK 103

Query: 92   TLDKPSFFAGNGGDEHDMFPRH-ARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
            + +       N      M P H  RL + TYS+ + V V+   YT+          GR+ 
Sbjct: 104  STEDLQKVKRN------MIPPHQCRLSDTTYSAPIYVDVE---YTR----------GRKI 144

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG------DCDFDHGGYFIIKGAEKV 204
             + ++        + IG++P+M++S+ C ++  ++       +C  D GGYFI+ G EKV
Sbjct: 145  IMHRD--------LEIGKMPIMLRSNKCILESKDESQMASLCECPLDPGGYFIVNGTEKV 196

Query: 205  FVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLS----VY 260
             + QEQ+   R+ V            E    + IV+    S   + K    V++    +Y
Sbjct: 197  ILVQEQLSKNRIIV------------EADDKKQIVQASVTSSTHERKSKTYVVTKNNKIY 244

Query: 261  F----LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRK 316
                 +S E+PI ++  A G+ SD EI+ L+   C D S    LF    +   K D    
Sbjct: 245  LKHNSISEEVPIVLVLKAAGIVSDLEIMQLV---CGDDSTYQDLFTINFEEAAKLD-IHT 300

Query: 317  GRNALKYVDKLIKG---------TTFPPG-ESTEECMNTYLFPSLHGTKQKARFLGYMVK 366
             R+AL+Y+ K +K          + +  G E+    +  ++       ++KA +L  M +
Sbjct: 301  QRDALEYIGKRVKTMRRLGAPKLSIYQEGVEAIANTIVAHISVEDLNFREKAIYLAIMTR 360

Query: 367  CLLQAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGD 422
             ++ A       D+RD   NKRLELAG+L+    E   K   +  +  + K L++     
Sbjct: 361  RVVMAMHNPTMIDDRDYVGNKRLELAGQLMSLLFEDLFKKFNSDFKANIDKILKKPNRAS 420

Query: 423  RTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
                 +   + ++ +T G++RA STG WS    + ER +G+   L R + +  L  + R 
Sbjct: 421  EFDALLSINVHSNNITTGINRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALGMMTRI 479

Query: 483  RQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLVSTSILEPIFEQL 541
              Q + + KV   R   PS +G +C   TP+GE CGLVKNL + T + +    EP+ +  
Sbjct: 480  SSQFEKSRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEEPVRKIC 539

Query: 542  FNSGME--KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIK 599
            +  G E  K+ D +  S    F V+++G  IGV +    FV++ R+ RR  ++   + I 
Sbjct: 540  YLLGAEDIKIVDSSVISSRSNFGVYLNGTMIGVIRYPTVFVTKFRKLRRSGKVSAFISIY 599

Query: 600  RDELQSEVRIFMDAGRILRPLLVVEN-MGKIKS-----LEGKNYTFQALLDHGIIELVGT 653
             +     V +  D GRI RPL++VEN + K+++     L+   + F + L +G++E +  
Sbjct: 600  INSHHKAVHLAADGGRICRPLIIVENGVSKVEAHHLQKLKDGEWQFDSFLTNGLVEYLDV 659

Query: 654  EEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQS 713
             EE D   A       KDI++      TH E++   +LG   G+IP+ +H+ + R  YQ 
Sbjct: 660  NEENDSLIAL----YEKDIKNYT----THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQC 711

Query: 714  QKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYN 773
                 QAIG    N   R+DTL + + YPQ+P+ +T   + +G             +L  
Sbjct: 712  -AMGKQAIGAIGYNQFNRIDTLLYLMVYPQQPMVKTKTIELIG-----------YDKLPA 759

Query: 774  GQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMV 833
            GQNA VAV  + GY+ ED+LV+N+AS++RG  R +  R     +       K       V
Sbjct: 760  GQNATVAVMSYSGYDIEDALVLNKASIDRGFGRCQVFRKNTTLLKRYPNHTKDILGGMSV 819

Query: 834  NFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSI----------KLKH 883
            N       I +  SL  DG   +G  L+SG + + K+    ++ SI          K +H
Sbjct: 820  N--DQGEPIFQHRSLGPDGLGEVGLPLESGQVYVNKFVPINSEESIIGQTPDDSQRKEQH 877

Query: 884  TERGMV---------QKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLE 934
             E  MV          ++++S  ++ +      LRQ R P LGDKFSS HGQKGV G + 
Sbjct: 878  RETPMVYRGPEPSYIDQMMMSLGENDQVLVKALLRQTRRPELGDKFSSRHGQKGVCGIIV 937

Query: 935  SQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFA 994
             QE+ PF   GI PDI++NPH FPSR T G+++E   GK       G+  G  +Y T F 
Sbjct: 938  QQEDLPFNDDGISPDIIMNPHGFPSRMTVGKMIELISGKA------GVLDGSLQYGTCFG 991

Query: 995  TPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNT 1054
               +  +++ L   GFS  G ++LY G TGE +++ IF GP +YQ+L HM  DK+  R+ 
Sbjct: 992  GSDLKEMSQILIDKGFSYSGKDQLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARSR 1051

Query: 1055 GPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKN 1114
            GP   LTRQP   R R GG++ GEMERDC++A+GA+  L ERL   SD++++ +C  C  
Sbjct: 1052 GPRAVLTRQPTEGRSRDGGLRLGEMERDCVVAYGASQLLLERLMISSDAFEVDVCNTC-- 1109

Query: 1115 VANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFD 1169
                       G      +C  C S + I+K  +PY AKLL QEL SM I  + +
Sbjct: 1110 -----------GLMGYNGWCPTCKSSEFIIKMTIPYAAKLLFQELVSMNIAPRLE 1153


>gi|444316230|ref|XP_004178772.1| hypothetical protein TBLA_0B04150 [Tetrapisispora blattae CBS 6284]
 gi|387511812|emb|CCH59253.1| hypothetical protein TBLA_0B04150 [Tetrapisispora blattae CBS 6284]
          Length = 1148

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 367/1196 (30%), Positives = 580/1196 (48%), Gaps = 159/1196 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++S+N F+   L+K   +    ++    DP    E   ++  +R GQ 
Sbjct: 51   AFLKVKGLVKQHLDSFNFFVDVDLKKIIKA--NRLILSDVDP----EFYLKFIDIRIGQR 104

Query: 92   TLDKPSFFAGNGGDEHDMFPRH-ARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
            +         N   +  + P H  RL++MTYS+ + V ++   YT+          GR  
Sbjct: 105  S---------NSSSKDILAPPHECRLRDMTYSAPIYVDIE---YTR----------GRNI 142

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKV 204
             I ++V         IG++P+M++S+ C + G ++       +C  D GGYFI+ G EKV
Sbjct: 143  VIHRDVE--------IGKMPIMLRSNKCILNGCDEQMMARLNECPLDPGGYFIVNGTEKV 194

Query: 205  FVAQEQICLKRLWVS--NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKV-LSVYF 261
             + QEQ+   R+ V      G   A  + +   R        SK   +   +K+ L    
Sbjct: 195  ILVQEQLSKNRIIVEADEKKGVVQASVTSSTHER-------KSKTYVVTKNDKIYLKHNS 247

Query: 262  LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNAL 321
            +S ++PI I+  A G+ SD EI+ L+   C + S    +FA   +   K   + + + AL
Sbjct: 248  ISEDVPIAIVLKAAGIVSDLEILQLV---CGNDSSYQDIFAVNLEEAAKFKIYTQ-QQAL 303

Query: 322  KYVD---KLIKGTTFPPGESTEECMNTYLFPSLH----GTKQKARFLGYMVKCLLQAYSG 374
            +Y+    K I+       +   E + T +   L       ++KA ++  M + ++ A   
Sbjct: 304  EYIGTKVKTIRKQKLTALQEGIEAIATTVIAHLTVEELDFREKALYIAMMTRRVVMAIHN 363

Query: 375  RRKCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKRMAKALQRDLYGDR 423
             +  D+RD   NKRLELAG+L+             + K+ I    K+  +A++ D     
Sbjct: 364  PKMVDDRDYVGNKRLELAGQLISLLFEDLFKKFTSDFKMSIDKVLKKPNRAMEYDAL--- 420

Query: 424  TVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTR 483
                +   +  + +T+GL+R+ STG WS    + ER +G+   L R + +  L  + R  
Sbjct: 421  ----LSINVHCNNITSGLNRSISTGNWSLKRFKMER-AGVTHVLSRLSYISALGMMTRIS 475

Query: 484  QQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLF 542
             Q + + KV   R   PS +G +C   TP+GE CGLVKNL +   ++T   E PI +  +
Sbjct: 476  SQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEDPIKKLCY 535

Query: 543  NSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
              G+E ++   S ++   + V ++G  +G  +    FV++ R  RR  ++   + I  + 
Sbjct: 536  VLGVEDISSLDSATIHESYGVHLNGTLVGTTRFPNKFVTQFRDLRRAGKVSAFISIYTNS 595

Query: 603  LQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGIIELVGTEE 655
             Q  V I  D GRI RPL+V+E  GK       ++ L   +  F   L  G++E +   E
Sbjct: 596  HQQAVHIATDGGRICRPLIVIEK-GKSLVKAEHLRDLLNGDLVFDDFLKLGLVEYLDVNE 654

Query: 656  EEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQK 715
            E D   A   K       D  P   TH E++   +LG   G+IP+ +H+ + R  YQ   
Sbjct: 655  ENDSFIALYEK-------DITP-AMTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQC-A 705

Query: 716  HSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQ 775
               QAIG    N   R+DTL + + YPQ+P+ +T   +           ++   +L  GQ
Sbjct: 706  MGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIE-----------LINYDKLPAGQ 754

Query: 776  NAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRR---SSDDM 832
            NA VAV  + GY+ ED+L++N++S++RG  R E  R        K   + +R    + D+
Sbjct: 755  NATVAVMSYSGYDIEDALILNKSSIDRGFGRCETRR--------KTTTILKRYPNHTQDI 806

Query: 833  VNFGKIQSK---IGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHT----- 884
            +   ++      I + ++L  DG   +G  + SG I I K   +     ++  +T     
Sbjct: 807  IGGMRVDENGKPIWQHEALGPDGLGEVGMKVSSGQIYINKSIPTNTAEGLEAINTQSQYK 866

Query: 885  ---------ERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLES 935
                     E   V +V++S +D+ +    V LRQ R P LGDKFSS HGQKGV G +  
Sbjct: 867  ETPVMYRGPEPSHVDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGLIVQ 926

Query: 936  QENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFAT 995
            QE+ PF  QGI PDI++NPH FPSR T G+++E   GK       G+ +G   Y T F  
Sbjct: 927  QEDMPFNDQGINPDIIMNPHGFPSRMTVGKMIELISGKA------GVLNGSLEYGTCFGG 980

Query: 996  PSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTG 1055
              ++ +++ L   GF+  G + LY G TGE +++ IF GP +YQ+L HM  DK+  R  G
Sbjct: 981  SKLEEMSKILVDKGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARG 1040

Query: 1056 PVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNV 1115
            P   LTRQP   R R GG++ GEMERDC+IA+GA+  L ERL   SD++++ +C KC   
Sbjct: 1041 PRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDKC--- 1097

Query: 1116 ANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                      G      +C  C S ++I+K  +PY AKLL QEL SM I  +   E
Sbjct: 1098 ----------GLMGYSGWCTTCRSAENIIKMTIPYAAKLLFQELLSMNIAPRLRME 1143


>gi|380493500|emb|CCF33834.1| DNA-directed RNA polymerase III subunit RPC2 [Colletotrichum
            higginsianum]
          Length = 1151

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 386/1208 (31%), Positives = 583/1208 (48%), Gaps = 162/1208 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN F++N +++   +    I+    + S      W    + F  +
Sbjct: 35   AFLKVKGLVKQHIDSYNFFVENEIKEIVRA--NRIIRSDVNSSF-----W----LEFTDI 83

Query: 92   TLDKPSFFAGNG-GDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
             +++PS    N    ++++ P   RL++MTY++ + V + +          DK K  R+ 
Sbjct: 84   RVERPSRVDFNDIRAQNEVSPMECRLRDMTYAAPIMVDIAY--------IRDKSKIVRK- 134

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGAEKV 204
                        N+ +GR+PVM+KS +C + G    +      C  D GGYFII G EKV
Sbjct: 135  ------------NVPLGRLPVMLKSSICRLGGANNAEMSRMNECPLDPGGYFIINGTEKV 182

Query: 205  FVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFE-------DIKGGEKVL 257
             + QEQ+   R+ V             +++N +I   V  S  E        +K    +L
Sbjct: 183  ILIQEQLSKNRVIVE-----------ADEKNSVITASVTSSTHERKSKTYVTLKKDRILL 231

Query: 258  SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG 317
            +   L   IPI I+  ALG  +D EI+ L+     D       F    +   K   + + 
Sbjct: 232  TANILVEGIPIVIILKALGGLTDYEIMQLV---AGDNGKYQDEFLVQFEEATKVGVYTQ- 287

Query: 318  RNALKYVDKLIK-GTTFPPGES------TEECMNTYL-----FPSLHGTK--QKARFLGY 363
            + AL+Y+   +K G +  P  +       EE ++           + G     KA ++ +
Sbjct: 288  QQALEYIGARVKMGKSRVPFAAQVRRNHVEEALDALANLIIAHVPIEGLDFYPKAVYVAF 347

Query: 364  MVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDL 419
            M + +L A       D+RD   NKRLELAG+LL    E   K    + +  + K L++D 
Sbjct: 348  MTRRVLMAQQDPSLVDDRDFVGNKRLELAGQLLSLLFEDLFKQFCGNVKSSIDKVLKKD- 406

Query: 420  YGDRTVRPIEYYL----DASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQT 475
              +R V P++        A+++  G++RA  TG W+       R +G+   L R + +  
Sbjct: 407  --NRAV-PLDAVNMISNHANMIGQGINRAIQTGNWTVKRFNMNR-AGVTHVLSRLSYISA 462

Query: 476  LVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE 535
            L  + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T++ E
Sbjct: 463  LGMMTRISSQFEKTRKVSGPRALQPSQWGMLCTSDTPEGEACGLVKNLALMTHITTNVEE 522

Query: 536  -PIFEQLF--NSGMEKLADDASYSLG--GKFKVFVDGDWIGVCKDSLSFVSELRRKRRRK 590
             P+   +F  ++G+E + + +   +     + + ++G    + +    F  + R  RRR 
Sbjct: 523  APVKRWVFTLDAGVEPIRNFSGGEMHRETSYVIHINGTPFALTRYPKRFAGKFRTMRRRG 582

Query: 591  ELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALL 643
             +   V I  +   + V I  D GRI RP ++V+N GK       ++ L+    TF   L
Sbjct: 583  WISPFVSIHINNHFNAVHIATDEGRICRPYIIVKN-GKPKLKAEHLRLLQLGKATFDDFL 641

Query: 644  DHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANH 703
             HGI+E +   EE D   A   K       D  P+  TH E++   +LG   G+IPF +H
Sbjct: 642  THGIVEYLDVNEENDTLVALYEK-------DVTPLT-THMEIEPFTVLGAVAGLIPFPHH 693

Query: 704  DHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHN 763
            + + R  YQ      QAIG    N   R+DTL + L YPQRP+   +IS  +    Y   
Sbjct: 694  NQSPRNTYQC-AMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPM---VISKTIQLVNYD-- 747

Query: 764  HILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQ 823
                  +L  GQNA V V  + GY+ ED+LV+N+AS +RG  R +  R Y AE+  K   
Sbjct: 748  ------KLPAGQNATVIVMSYSGYDIEDALVLNKASCDRGFGRCQVFRKYTAEL-QKYPN 800

Query: 824  VKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA--DSGA------ 875
             +R    D VN      +  + ++LDDDG   +G  + SG+++I K    D+G+      
Sbjct: 801  GRRERIGDPVN--DENGRTTKHEALDDDGLAIVGYKVNSGEVMIKKETPLDTGSTGIGMD 858

Query: 876  -------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKG 928
                   D SI  +  +   + KV++S  +       V  RQ R P LGDKFSS HGQKG
Sbjct: 859  RGPSEFRDSSISYRIADPAYIDKVMVSHTERETMVVKVQTRQTRRPELGDKFSSRHGQKG 918

Query: 929  VLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKR 988
            V+G +  QE+ PF+  G+VPDI++NPH FPSR T G+LLE   GK        +  G K 
Sbjct: 919  VVGIIVDQEDLPFSDTGLVPDIIMNPHGFPSRMTVGKLLECLTGKA------SVLDGRKD 972

Query: 989  YA--TPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSE 1046
            Y     F +  ++ ++  L   GFS  G +    G TGE + + IF GP +YQRL HM +
Sbjct: 973  YGFGDAFRSHPLEQMSAALVDHGFSWEGKDYFTSGITGEPLEAYIFNGPIYYQRLKHMVQ 1032

Query: 1047 DKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQM 1106
            DK+  R+ GP   LTRQP   R R GG++ GEMERDCLIA+GA+  L ERL   SD  Q+
Sbjct: 1033 DKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMISSDGTQI 1092

Query: 1107 HICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSM--GI 1164
             IC++C            G    +G YC  C S  ++ +  +PY AKLL QEL SM  G+
Sbjct: 1093 DICQQC------------GLFGYKG-YCHTCKSTREVTQMTMPYAAKLLVQELISMNVGV 1139

Query: 1165 TLKFDTEF 1172
             L+ + EF
Sbjct: 1140 RLQLEDEF 1147


>gi|156839387|ref|XP_001643385.1| hypothetical protein Kpol_479p15 [Vanderwaltozyma polyspora DSM
            70294]
 gi|156113993|gb|EDO15527.1| hypothetical protein Kpol_479p15 [Vanderwaltozyma polyspora DSM
            70294]
          Length = 1139

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 371/1193 (31%), Positives = 568/1193 (47%), Gaps = 154/1193 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++S+N F+   L+K   +    ++    DP    E   +Y  +R GQ 
Sbjct: 43   AFLKVKGLVKQHLDSFNYFVDVDLKKIIKA--NQLILSDVDP----EFYLKYVDIRIGQ- 95

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
                    + +   ++   P   RL++MTYS+ + V ++   YT+          GR   
Sbjct: 96   -------RSSSSSKDYLTPPHECRLRDMTYSAPIYVDIE---YTR----------GRNII 135

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG------DCDFDHGGYFIIKGAEKVF 205
            + K+V         IGR+P+M++S+ C + G +        +C  D GGYFI+ G EKV 
Sbjct: 136  MHKDVE--------IGRMPIMLRSNKCILNGADDSMMAKLNECPLDPGGYFIVNGTEKVI 187

Query: 206  VAQEQICLKRLWVSNSMGWTVAYKS------ENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            + QEQ+   R+ V       +   S      E K    +V           K G+  L  
Sbjct: 188  LVQEQLSKNRIIVEADEKKEIVQASVTSSTHERKSKTYVV----------TKNGKIYLKH 237

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
              ++ E+PI I+  A G+ SD EI+ L+   C + S    +FA   +   K + + + R 
Sbjct: 238  NSIAEEVPIAIVLKACGIISDLEIMQLV---CGNDSSYQDIFAVNLEEAAKYNIYTQ-RQ 293

Query: 320  ALKYVD---KLIKGTTFPPGESTEECMNTYLFPSLH----GTKQKARFLGYMVKCLLQAY 372
            AL+Y+    K I+       +   E + T +   L       ++KA ++  M + ++ A 
Sbjct: 294  ALEYIGGKVKTIRRQKLSILQEGIEAIATTVIAHLTVEALDFREKALYVAMMARRVVMAM 353

Query: 373  SGRRKCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKRMAKALQRDLYG 421
               +  D+RD   NKRLELAG+L+             + K  I    K+  +A++ D   
Sbjct: 354  HNPKMVDDRDYVGNKRLELAGQLISLLFEDLFKKFNSDFKASIDKVLKKPNRAMEYDAL- 412

Query: 422  DRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRR 481
                  +   + ++ +T+GL+RA STG WS    + ER +G+   L R + +  L  + R
Sbjct: 413  ------LSINVHSNNITSGLNRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALGMMTR 465

Query: 482  TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLVSTSILEPIFEQ 540
               Q + + KV   R   PS +G +C   TP+GE CGLVKNL + T + +    EPI   
Sbjct: 466  ISSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKNL 525

Query: 541  LFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKR 600
             F  G+E +    S +L   + V ++G  IG  +    FVS+ R  RR  ++   + I  
Sbjct: 526  CFVLGVENICLVDSATLHLNYTVHLNGTLIGTIRFPARFVSQFRHLRRTGKVSEFISIYT 585

Query: 601  DELQSEVRIFMDAGRILRPLLVVE------NMGKIKSLEGKNYTFQALLDHGIIELVGTE 654
            +  Q  V I  D GRI RPL++V       N   +K L      F   L  G++E +   
Sbjct: 586  NSHQRAVHIATDGGRICRPLIIVTAGKSHVNAEHLKELLEGKLVFDDFLKLGLVEYLDVN 645

Query: 655  EEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQ 714
            EE D   A       KDI +      TH E++   +LG   G+IP+ +H+ + R  YQ  
Sbjct: 646  EENDSFIAL----YEKDINEN----VTHMEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCA 697

Query: 715  KHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNG 774
                QAIG    N   R+DTL + + YPQ+P+ +T   +           ++   +L  G
Sbjct: 698  M-GKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIE-----------LIDYDKLPAG 745

Query: 775  QNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVN 834
            QNA VAV  + GY+ ED+LV+N++S++RG  R E  R          ++     + D++ 
Sbjct: 746  QNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRK-----TTTVLKKYPNHTQDIIG 800

Query: 835  FGKIQSK---IGRVDSLDDDGFPFIGANLQSGDIVIGKYA--DSG----ADHSIKLKHT- 884
              ++      I + + L  DG   +G  + SG I I K    +SG    A+   + K T 
Sbjct: 801  GMRVDENGKPIWQHEPLGPDGLGEVGVQVTSGQIYINKSVPTNSGEGVLANTQAQYKETP 860

Query: 885  ------ERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQEN 938
                  E   + +V++S +D+ +    V LRQ R P LGDKFSS HGQKGV G + + E+
Sbjct: 861  VIYRAPEPSRIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVNHED 920

Query: 939  FPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSV 998
             PF   GI PDI++NPH FPSR T G+++E   GK       G+ +G   Y T F    +
Sbjct: 921  MPFNDDGISPDIIMNPHGFPSRMTVGKMIELVSGKA------GVLNGSLEYGTCFGGSKL 974

Query: 999  DAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVH 1058
            + ++  L   GF+  G + LY G TGE +++ IF GP +YQ+L HM  DK+  R  GP  
Sbjct: 975  EDMSRILVDKGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGPRA 1034

Query: 1059 PLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANV 1118
             LTRQP   R R GG++ GEMERDC+IA+GA+  L ERL   SD++++ +C KC      
Sbjct: 1035 VLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDKC------ 1088

Query: 1119 IQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                   G      +C  C S +   K  +PY AKLL QEL SM I  +   E
Sbjct: 1089 -------GLMGYSGWCSTCKSAEHNNKMTIPYAAKLLFQELLSMNIAPRLRLE 1134


>gi|384497113|gb|EIE87604.1| DNA-directed RNA polymerase III subunit RPC2 [Rhizopus delemar RA
            99-880]
          Length = 1146

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 365/1197 (30%), Positives = 566/1197 (47%), Gaps = 152/1197 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+S+N F+   LQK   +  +  V    DP        +Y  +R G  
Sbjct: 42   AFLKVKGLVKQHIDSFNYFVNVDLQKIIKANEK--VTSDVDP----HFYLKYTGIRVGM- 94

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
                P     +  +     P   RL+++TYS+ + V V+   YT+ R           Q 
Sbjct: 95   ----PERTDDDVAN-RSYTPHECRLRDLTYSANIFVDVE---YTRGR-----------QI 135

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGAEKVF 205
            ++++       N++IGR+P+M++S  C + G  + +      C  D GGYF++KG EKV 
Sbjct: 136  VKRK-------NVMIGRLPIMLRSSHCVLSGKNEAELARMKECPLDPGGYFVVKGTEKVI 188

Query: 206  VAQEQICLKRLWV----SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYF 261
            + QEQ+   R+ V     N++   V   +  ++++  +          +K G+  L    
Sbjct: 189  LVQEQLSKNRIIVDVDKKNNIVANVQSSTHERKSKTAIF---------VKNGKIYLKHNS 239

Query: 262  LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNAL 321
            +S +IP+ I   ALGV SD+EI  L+   C D   L+  F+   +  ++   F +   AL
Sbjct: 240  ISEDIPVAIFLKALGVQSDREIAQLV---CGDDHDLHDTFSINIEESSRLRVFTQ-MQAL 295

Query: 322  KYVDKLIK-----GTTF--PPGESTEECMNTYLFPSLH----GTKQKARFLGYMVKCLLQ 370
             Y+   +K     G T      E   E + T +   +       ++K+ +   M++ +L 
Sbjct: 296  DYIGAKVKVNRKMGPTVRKTMAEEALEVLATVILAHVPVENLNFREKSIYAAVMIRRVLA 355

Query: 371  AYSGRRKCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKRMAKALQRDL 419
            A S   + D+RD   NKRLELAG+LL             +LK++     K+  +  + D+
Sbjct: 356  AMSDEVQVDDRDYVGNKRLELAGQLLSLLFEDLFKKFNSDLKMNADKVLKKPNRTQEFDI 415

Query: 420  YGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDL 479
            +        +  L    +T+G  RA STG W     + +R +GI   L R + +  L  +
Sbjct: 416  FN-------QLVLHGDHITSGFIRAISTGNWVLKRFKMDR-AGITQVLSRLSYISALGMM 467

Query: 480  RRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIF 538
             R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T   E PI 
Sbjct: 468  TRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDQEEDPIR 527

Query: 539  EQLFNSGME--KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQV 596
            +  F  G+E   L   A       F V ++G  +G+ +    FV   RR RR   +   V
Sbjct: 528  KIAFALGVEDVNLLTGAEIYRPNTFIVLLNGVILGITRRVQHFVRSFRRLRRAGRISEFV 587

Query: 597  EIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIEL 650
             +  +  Q  V +  D GRI RPL++VEN         I  L      F   L  G++E 
Sbjct: 588  SVFVNIHQKTVNLSSDGGRICRPLIIVENGVPAVKQHHINDLIAGKLVFDDFLKRGLVEY 647

Query: 651  VGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVL 710
            V   EE D      I    KDI  +     TH E++   +LG   G+IP+ +H+ + R  
Sbjct: 648  VDVNEESDA----NIAVYEKDIIPQT----THLEIEPFTILGAVAGLIPYPHHNQSPRNT 699

Query: 711  YQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPE 770
            YQ      QAIG    N   R++TL + + YPQ+P+ ++   + +G             +
Sbjct: 700  YQC-AMGKQAIGAIGYNQLNRIETLIYLMVYPQQPMVKSKTIELIG-----------YDK 747

Query: 771  LYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSD 830
            L  GQNA VAV  + GY+ ED+LV+N++ L+RG  R + +R Y   V         R +D
Sbjct: 748  LPAGQNATVAVMSYSGYDIEDALVLNKSGLDRGFGRCQVMRKYATMVKRYPNGTHDRLAD 807

Query: 831  DMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKY--ADSGADHSI--------- 879
                  ++ ++    D+++ DG   +G  +++G I I K     +G D  +         
Sbjct: 808  PPSRESELWNE--SYDAIEADGIAGVGEPVEAGSIYINKQTPVSTGVDAGVPGAAQTVAY 865

Query: 880  -----KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLE 934
                 + K  + G + KV+ ++ +  +    V++RQ R P LGDKFSS HGQKGV G + 
Sbjct: 866  KPAPMRYKSPQTGYIDKVLFTTTESDQTLIKVNIRQTRRPELGDKFSSRHGQKGVCGIIV 925

Query: 935  SQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFA 994
             QE+ PF+  G+ PDI++NPH FPSR T G+++E   GK       G+  G  +Y T F 
Sbjct: 926  QQEDMPFSDLGVCPDIIMNPHGFPSRMTVGKMIELLAGKA------GVLDGSLQYGTAFG 979

Query: 995  TPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNT 1054
               V+ ++  L   GF+  G + +  G TGE + + IF GP +YQ+L HM  DK+  R  
Sbjct: 980  GSKVEDMSRILINHGFNYSGKDYVTSGITGEPLSAYIFFGPIYYQKLKHMVMDKMHARAR 1039

Query: 1055 GPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKN 1114
            GP   LTRQP   R R GG++ GEMERD LI +GA+  L ERL   SD +++H+C +C  
Sbjct: 1040 GPRATLTRQPTEGRSRDGGLRLGEMERDALIGYGASMLLLERLMVSSDIFEVHVCNECGF 1099

Query: 1115 VANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
            +                 +C+ C S   +    +PY AKLL QEL +M I+ +   E
Sbjct: 1100 IG-------------YSGWCQFCKSSKFMKAMKIPYAAKLLFQELLAMNISPRLVLE 1143


>gi|118358942|ref|XP_001012712.1| DNA-directed RNA polymerase, beta subunit family protein [Tetrahymena
            thermophila]
 gi|89294479|gb|EAR92467.1| DNA-directed RNA polymerase, beta subunit family protein [Tetrahymena
            thermophila SB210]
          Length = 1141

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 378/1209 (31%), Positives = 587/1209 (48%), Gaps = 166/1209 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            S+    G VSH I S+N FI   LQ+   S     +    D S           + + ++
Sbjct: 18   SYLAHNGFVSHHIQSFNYFINIKLQQIITSSMNKELRLDTDNS---------FLLEYTKI 68

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             ++ P+       ++  M P+ ARL N +Y+  + V  +             F   +E  
Sbjct: 69   YIEPPAH-----DNKTMMLPQEARLSNSSYAGNIYVDCELT-----------FNGKKEDS 112

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLC-WMKGVEKG------DCDFDHGGYFIIKGAEKV 204
            ++K         + IG++P+M+ S  C  +K +E G      +C  D  GYFIIKG EKV
Sbjct: 113  LRK---------VNIGKMPIMLGSSHCNLIKALELGQVHKLQECANDPRGYFIIKGVEKV 163

Query: 205  FVAQEQICLKRLWVSNSMG--WTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFL 262
            F+ QEQ+   R+++            KS     + I  L+       IK  +  + V   
Sbjct: 164  FLIQEQLADNRIFIEEDKNKELVANVKSNTVDTKSITSLI-------IKNHKIYVKVSSF 216

Query: 263  STEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALK 322
            S  IP+ I F A GV S++EI  LI     +  +LN L   + D +    +    + AL+
Sbjct: 217  SKPIPLLIFFKAYGVESEQEIFQLIG---TEEHLLNRLALCLEDIEQ--SQVYTQQQALE 271

Query: 323  YVDKLIKGTTF---------PPGESTEECMNTYL--FPSL-HGTKQKARFLGYMVKCLLQ 370
            Y+ K ++  TF         P  E+ +   N  L   P   +    +A FLG M + L++
Sbjct: 272  YLSKRLRPKTFQDKKYSSRNPVDEARDIITNVVLCHIPCKNYNYYPRAIFLGLMARRLIE 331

Query: 371  AYSGRRKCDNRDDFRNKRLELAG---ELL-ERELKVHIAHARKRMAKALQRDLYGDRTVR 426
            A     K D RD + NKR++ AG   ELL E + K      RK ++K +++       ++
Sbjct: 332  ALDDPSKIDKRDYYGNKRMKCAGWYLELLFEDKFKQFNMMVRKELSKEIEKHKNKSYPIK 391

Query: 427  P-IEYYLDAS--ILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTR 483
              +E  L+ +  I+T GL+ A STG W+    R + + G+   L R + +  +  + R  
Sbjct: 392  NRVESILEKNHDIITQGLNNAISTGNWTIKRFRMDTV-GVTQVLARISYIAAIGMMTRMN 450

Query: 484  QQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQL-F 542
             Q + + K+   R    SHWG +C   TPDGE+CGL KNL +   ++    + +   +  
Sbjct: 451  SQFKKSRKLTGPRSLLGSHWGLVCPADTPDGESCGLTKNLSLMAHITIEEKKNVLSTIAL 510

Query: 543  NSGMEKLADDASYSLG-----GKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVE 597
            N GME   D   YS G       + VF++G  IG+ +D  +F  +LR  RRR ++ T + 
Sbjct: 511  NLGME---DIGHYSSGEIHEDKNYMVFLNGQIIGMHRDPEAFAQKLRFMRRRGKIGTTIS 567

Query: 598  IKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGIIEL 650
            I  +  +  V +  D GR+ R L+VVEN GK       +  L+ K  ++  L+  G+IE 
Sbjct: 568  ISTNSEKRAVYLDTDDGRLCRLLIVVEN-GKPLITNDHLNDLKEKRKSYLDLIRMGLIEY 626

Query: 651  VGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVL 710
            +   EE++C  A  IK   +DI ++   K TH E+D   LLG+  G++P+ +H+ A R  
Sbjct: 627  IDVNEEDNCYIA--IKQ--EDIPNRS--KTTHMEIDPLTLLGVVSGLVPYPHHNQASRNT 680

Query: 711  YQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPE 770
            +Q      QA+G   +    RVDT+ +QL YPQ PL +T + +  G   +   H      
Sbjct: 681  FQCA-MGKQALGIIGSTSMNRVDTILYQLIYPQTPLLKTKVIEYAGYDKFPAGH------ 733

Query: 771  LYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQ-----VK 825
                 NA +AV  + GY+ ED+ V+N++SL+RG  R+   + Y+ E+   +M      ++
Sbjct: 734  -----NASIAVLSYSGYDIEDATVLNKSSLDRGFGRTMVFKKYETEIQKLKMSGLTELLR 788

Query: 826  RRSSDDMVNFGKIQSKI-GRVDSLDDDGFPFIGANLQSGDIVIGKYA-----------DS 873
                +   ++ K Q+++  +  +LDDDG P +GA++ +GD++  KY            D 
Sbjct: 789  GPPKEAEGSYKKKQNRVLKKFGALDDDGTPIVGASINNGDVLFNKYTPLLTLEQQRGRDI 848

Query: 874  GADHSI-------------KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKF 920
              ++S+             KL   +R      V+ S  DG       +R+ R P  GDKF
Sbjct: 849  LNNNSVSEYIHNPTTFKGKKLARIDR------VIRSQQDGNVIIKTIVRETRRPEYGDKF 902

Query: 921  SSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGK 980
            SS HGQKG++G + +QE+ PF+ +G VPD+++NPH +PSR T G+LLE  LG   A L  
Sbjct: 903  SSRHGQKGIIGLIVNQEDMPFSEKGWVPDLIMNPHGYPSRMTVGKLLEL-LGSKAAVL-- 959

Query: 981  GICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQR 1040
               SG  +Y T F    +  ++  L + GFS  G + +  G TGE ++  +F GP FYQR
Sbjct: 960  ---SGQFKYGTAFGGDKMADLSSILVQNGFSYTGKDVIISGITGEYMQCYVFCGPVFYQR 1016

Query: 1041 LIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTL 1100
            L HM  DKV  R  G V  LTRQP   R + GG++ GEMERD L+A  ++  L ERL   
Sbjct: 1017 LKHMVADKVHARAKGRVTTLTRQPTEGRAKDGGLRLGEMERDSLLAFASSNLLIERLMIS 1076

Query: 1101 SDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELF 1160
            SD + + +C KC      IQ             C++C + D + K  +PY  KLL QEL 
Sbjct: 1077 SDKFSVQVCEKC----GFIQHTNS---------CKMCQT-DQVSKVVMPYACKLLFQELL 1122

Query: 1161 SMGITLKFD 1169
            SM I  K +
Sbjct: 1123 SMNIKPKLN 1131


>gi|295658889|ref|XP_002790004.1| DNA-directed RNA polymerase III subunit RPC2 [Paracoccidioides sp.
            'lutzii' Pb01]
 gi|226282087|gb|EEH37653.1| DNA-directed RNA polymerase III subunit RPC2 [Paracoccidioides sp.
            'lutzii' Pb01]
          Length = 1205

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 378/1217 (31%), Positives = 570/1217 (46%), Gaps = 180/1217 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN F++  L+K   +  E  +    DP+           +RF  +
Sbjct: 87   AFLKVKGLVKQHIDSYNYFVEVQLKKIVQASAE--IRSDVDPN---------FYIRFHDI 135

Query: 92   TLDKPSFFAGNGGDEHD--------MFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDK 143
             L  P        +E D        + P   RL++MTY+S + V  ++ V  ++RV  + 
Sbjct: 136  YLGTPR----RADEEQDSNFNAASTITPNECRLRDMTYASPILVDFEY-VRGRQRVKRN- 189

Query: 144  FKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFI 197
                                  IGR+PVM++S  C +    + +      C  D GGYFI
Sbjct: 190  -------------------GTAIGRMPVMLRSSKCVLSNKSEAEMQLLQECPLDPGGYFI 230

Query: 198  IKGAEKVFVAQEQICLKRLWVSNSMGWTVAY----KSENKRNRLIVRLVDMSKFEDIKGG 253
            + G EKV + QEQ+   R+ V   +   +       S N+R          SK   I   
Sbjct: 231  VNGTEKVILVQEQLSKNRVIVETDLKKEIVQASVTSSSNERK---------SKSYIILKK 281

Query: 254  EKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNL---IDFTCEDCSILNILFASIHDADN 309
            E++   +  L+ ++PI IL  A+G+ SDKE++ L   ID T ++   +N   A       
Sbjct: 282  ERIYVRHNVLNEDVPIVILLKAMGIQSDKEMLLLVAGIDSTYQEDFAINFEEAV------ 335

Query: 310  KCDEFRKGRNALKYVDKLIKGTTFPPG-------------ESTEECMNTYLFPSLHGTKQ 356
            K   + +   AL+Y+   IK    P               E+    + +++       + 
Sbjct: 336  KLGIYTQ-HQALEYIGSRIKINRKPNNFGVIRRNYVQEAIEAISSVIISHVVVENLNFRP 394

Query: 357  KARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL-----------ERELKVHIA 405
            KA ++ +M + +L A       D+RD   NKRLELAG+LL           + ++K++I 
Sbjct: 395  KALYVAHMARRVLMAKHDPSLVDDRDYVGNKRLELAGQLLSLLFEDLFKKFQFDIKMNID 454

Query: 406  HARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVA 465
               K+  +  Q D YG   +         + +T G++RA STG WS    R ER +G+  
Sbjct: 455  KVLKKPVRTEQFDAYGVVAIH-------GNHITQGMNRAISTGNWSLKRFRMER-AGVTH 506

Query: 466  NLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV 525
             L R + +  L  + R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL +
Sbjct: 507  VLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLAL 566

Query: 526  -TGLVSTSILEPIFEQLFNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVSE 582
             T + +    EP+ + +F  G E +       L G+  + VF++G  I + +    F+  
Sbjct: 567  MTHITTNDEEEPVRKLIFALGAEDVQTVGGRELHGQGTYIVFLNGSPIALTRRPKFFLHS 626

Query: 583  LRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGK 635
             RR RR   +   + +  +  Q  V I  D GRI RPL++VE+ GK       +++L   
Sbjct: 627  FRRLRRTGRVSEFISVFINHHQRAVHIATDDGRICRPLIIVED-GKSRVQARHLRALRSG 685

Query: 636  NYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSC 695
            +  F   L HG++E +   EE D      I     DI D      TH E++   +LG   
Sbjct: 686  SMEFDDFLAHGLVEYLDCNEENDS----NIAVYENDIVDST----THLEIEPFTILGAVA 737

Query: 696  GIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCL 755
            G+IP+ +H+ + R  YQ      QAIG    N  +R+D+L + + YPQ+P+ +T   +  
Sbjct: 738  GLIPYPHHNQSPRNTYQCAM-GKQAIGAIANNQFLRIDSLLYTMVYPQKPMVKTRTIE-- 794

Query: 756  GKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKA 815
                     ++    L  GQ A VAV  + GY+ ED+LV+N+ S++RG  R +  R Y  
Sbjct: 795  ---------LIKYDRLPAGQAATVAVMSYSGYDIEDALVLNKGSIDRGFGRCQVFRKYST 845

Query: 816  EVDNKEMQVKRR-SSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD-- 872
             + +     K +    D  N   ++        LD+DG   +G  +  G++ I K     
Sbjct: 846  NLKSYSNGTKDKLKGPDRENGLPVRKHA----LLDNDGLAAVGEKVNQGEVYINKVTPEN 901

Query: 873  ------SGADHSIKL---------KHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLG 917
                  +G+D    +         K  +   + KV++SS +       V  RQ R P +G
Sbjct: 902  ALSSGITGSDAGRPITYIPSPQTYKLPDPSYIDKVMISSTEAENQLIKVQTRQTRRPEVG 961

Query: 918  DKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAA 977
            DKFSS HGQKGV+G +  Q + PF+  GIVPDI++NPH FPSR T G++LE   GK    
Sbjct: 962  DKFSSRHGQKGVVGIIAEQADMPFSDLGIVPDIIMNPHGFPSRMTVGKMLELVAGKA--- 1018

Query: 978  LGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTF 1037
               GI SG   Y T F    V+ ++  L + GFS  G + L  G TGE + + +F+GP +
Sbjct: 1019 ---GILSGQFSYGTAFGGSPVEEMSAILVKHGFSYGGKDCLTSGITGESLPAYVFMGPIY 1075

Query: 1038 YQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERL 1097
            YQ+L HM +DK+  R  GP   LTRQP   R R GG++ GEMERDCLIA+G +  L ERL
Sbjct: 1076 YQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERL 1135

Query: 1098 FTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQ 1157
               SD Y++ +C  C             G      +C+ C S   +VK  +PY AKLL Q
Sbjct: 1136 MISSDQYEVDVCESC-------------GFMGYSGWCQRCKSSRGVVKMIIPYAAKLLVQ 1182

Query: 1158 ELFSMGIT--LKFDTEF 1172
            ELFSM +   LK   EF
Sbjct: 1183 ELFSMNVVARLKLADEF 1199


>gi|452845424|gb|EME47357.1| hypothetical protein DOTSEDRAFT_125117 [Dothistroma septosporum
            NZE10]
          Length = 1147

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 378/1232 (30%), Positives = 577/1232 (46%), Gaps = 178/1232 (14%)

Query: 7    GFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETI 66
            G TDP +        L  F R          GL+    +S++ F    L+K   +  E I
Sbjct: 24   GLTDPINTAQDKWNLLPAFLRVK--------GLIKQHTDSFDYFCNVELKKILKA-NEMI 74

Query: 67   VEPGYDPSKKGEGE-WRYASMRFGQVTLDKPSFFAGNGGDEHDMF------PRHARLQNM 119
            +      SK+ +G+ W    +RF  + + +PS       D H  +      P   RL++M
Sbjct: 75   I------SKETKGKKW----IRFTDIRVGEPS----RAEDAHKSYVQTTVTPNECRLRDM 120

Query: 120  TYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCW 179
            TYS+ + +      Y   R + +  KT                N+ IGR+P+M++S  C 
Sbjct: 121  TYSAPIYID-----YVYPRQSGNVKKT----------------NVQIGRMPMMLRSSRCV 159

Query: 180  MKGVEKGD------CDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENK 233
            + G  + D      C  D GGYFI++G EKV + QEQ+   R+ V +  G   A  + + 
Sbjct: 160  LSGRPESDMGMLNECAVDPGGYFIVRGQEKVILVQEQLSKNRIIVESFKGMIQASVTSHT 219

Query: 234  RNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLI---DFT 290
             N      V    +  +K G   L    L+ ++P+ I   A+GV SD EI+ L    D  
Sbjct: 220  AN------VKTKTYVVLKKGHLYLKHNSLTEDVPVAIALRAMGVQSDHEILLLAAGNDAQ 273

Query: 291  CEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFP-----------PGEST 339
             +D    N+  A++  A  +          L Y+   +K   FP           P +  
Sbjct: 274  YQDEFAPNLEMAALEGAFTQ-------EQGLDYIATRLKPERFPVYASPTGEVKTPKQKA 326

Query: 340  EECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGEL 395
             E +   + P +       + KA ++ +M + +L A    +  D+RD   NKRLELAG++
Sbjct: 327  MEKLAATIIPHVPVEDMNFRPKALYIAFMTRRVLMAMIDPKLVDDRDYVGNKRLELAGQM 386

Query: 396  LE-----------RELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRA 444
            L            R++ +++    K+     + D      +R IE   DA I T+G+ RA
Sbjct: 387  LALLFEDLFKDCTRQIFINMEKQLKKSNPTAEFD-----PLRLIEQ-CDARI-TSGMERA 439

Query: 445  FSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWG 504
             STG W+    R +R +G+   L R + +  L  + R   Q + T KV   R   PS +G
Sbjct: 440  ISTGNWTLKRFRMDR-AGVTHVLSRLSYISALGMMTRITSQFEKTRKVSGPRALQPSQFG 498

Query: 505  KICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKL--ADDASYSLGGKF 561
             +C   TP+GE CGLVKNL +   ++T+  E P+   ++  G E++  A  A     G +
Sbjct: 499  MLCTSDTPEGEACGLVKNLALMTHITTADEEGPVRMIMYVLGAEEVTSASGAEIYNDGAY 558

Query: 562  KVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLL 621
             VFV+G    + +    F++  R+ RR   +   V I  +   + V I  D GR+ RPL+
Sbjct: 559  IVFVNGTPTALTRQPKRFLNGFRKFRRMGRISEFVSIFINHHHNGVHIATDEGRVCRPLI 618

Query: 622  VVENMGK-------IKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIED 674
            VVE  GK       ++SL   +  F   L  GI+E +   EE D      I    KDI++
Sbjct: 619  VVEQ-GKSKVTTRFLESLRKGSMNFDDALSRGIVEYLDVNEENDS----NIAVYEKDIDE 673

Query: 675  KKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDT 734
                  TH E++   +LG   G+IP+ +H+ + R  YQ      QAIG    N   R+DT
Sbjct: 674  HT----THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQC-AMGKQAIGAIAYNQFTRIDT 728

Query: 735  LSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLV 794
            L + + YPQ P+ +T   +           ++   +L  GQNA+VAV  + GY+ ED+LV
Sbjct: 729  LLYLMVYPQAPMVKTRTIE-----------LVKYDKLPAGQNAVVAVMSYSGYDIEDALV 777

Query: 795  MNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFP 854
            +N+AS +RG  R +  +          M +K   +      G   +   R   +  DG  
Sbjct: 778  LNKASCDRGFGRCQVFKKV-------SMPLKAYGNGHTDRMGTKDNNNTRHRKIGTDGIV 830

Query: 855  FIGANLQSGDIVIGKYADSGADHSIK------------LKHTERGMVQKVVLSSNDDGKN 902
             +G  L++ D+ + K        S+              K  +     KV++++N+    
Sbjct: 831  EVGVELENSDMYMLKECPVNQATSVSQRDQKWSPMHMSYKLPDPCYADKVMVTANEANST 890

Query: 903  FSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQT 962
               +  RQ R P +GDKFSS HGQKGV+G L  Q + PF+ QG+VPDI++NPH FPSR T
Sbjct: 891  IIKIQTRQTRRPEIGDKFSSRHGQKGVVGLLAEQADMPFSDQGVVPDIIMNPHGFPSRMT 950

Query: 963  PGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGR 1022
             G++LE   GK       G+ +G   Y T F    V+ +   L + GFS  G + L  G 
Sbjct: 951  VGKMLELVSGKA------GVLAGKHEYGTAFGGSKVEDMGRTLVKHGFSYSGKDCLTSGI 1004

Query: 1023 TGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1082
            TGE +   +F GP +YQ+L HM +DK+  R+TGP   LTRQP   R R GG++ GEMERD
Sbjct: 1005 TGESLPMYVFFGPIYYQKLKHMVQDKMHSRSTGPRAILTRQPTEGRSRQGGLRLGEMERD 1064

Query: 1083 CLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDD 1142
            CLIA+GA+  L ERL   SD++++ +C+ C             G      +C+ C S   
Sbjct: 1065 CLIAYGASQLLLERLMISSDAHEVDVCQVC-------------GMMGYNGWCQSCSSTRS 1111

Query: 1143 IVKANVPYGAKLLCQELFSMGI--TLKFDTEF 1172
            +V+  +PY AKLL QEL SM +  +L+   EF
Sbjct: 1112 VVRMTMPYAAKLLIQELMSMNVKASLQLADEF 1143


>gi|125808948|ref|XP_001360931.1| GA21006 [Drosophila pseudoobscura pseudoobscura]
 gi|54636103|gb|EAL25506.1| GA21006 [Drosophila pseudoobscura pseudoobscura]
          Length = 1137

 Score =  491 bits (1264), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 367/1194 (30%), Positives = 566/1194 (47%), Gaps = 152/1194 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+S+N FI   ++K   +    +V  G DP            +++  V
Sbjct: 40   AFLQVKGLVRQHIDSFNHFINVDIKKIVRA--NELVTSGADP---------LFYLKYLDV 88

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             + KP    G    +    P   RL++ TYSS + V +++   TQ+              
Sbjct: 89   RVGKPDIDDGYNITKATT-PHECRLRDTTYSSPITVDIEYTRGTQR-------------- 133

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVF 205
            I++        N++IGR+P+M++   C + G  +       +C  D GGYF+++G EKV 
Sbjct: 134  IKR-------NNLLIGRMPLMLRCSNCVLTGKSEFELSKLNECPLDPGGYFVVRGQEKVI 186

Query: 206  VAQEQICLKRLWVSNSMGWT---VAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFL 262
            + QEQ+   ++   +  G     V   +  K++R +V    +SK      G   L    +
Sbjct: 187  LIQEQLSWNKMLTEDFNGVVQCQVTSSTHEKKSRTLV----LSKH-----GRYYLKHNSM 237

Query: 263  STEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALK 322
            + +IPI ++F ALG+ SD+EI+  I     D    N   AS+ +A N    F + R AL 
Sbjct: 238  TDDIPIVVIFKALGIVSDQEIMAHIGI---DTKSQNRFGASLLEAFN-LKVFTQQR-ALD 292

Query: 323  Y------VDKLIKGTTFPPGESTEECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAY 372
            Y      V +    TT  P E   + + T +   +       + KA ++  MV+ ++ A 
Sbjct: 293  YMGSKLVVKRFQSATTKTPAEEARDLLLTTILAHVPVDNFNFQMKAIYVSMMVRRVMSAE 352

Query: 373  SGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEY-- 430
              +   D+RD + NKRLELAG L+     +      KRM   L+  +  D+ +  ++   
Sbjct: 353  LDKTLFDDRDYYGNKRLELAGSLIS----LMFEDLFKRMNWELK--MIADKNIPKVKAAQ 406

Query: 431  -----YLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQ 485
                 ++ A+ +T GL  A S+G W+    + ER +G+   L R + +  L  + R   Q
Sbjct: 407  FDVVKHMRAAQITAGLESAISSGNWTIKRFKMER-AGVTQVLSRLSYISALGMMTRVNSQ 465

Query: 486  VQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNS 544
             + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + E P+    FN+
Sbjct: 466  FEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERPVMILAFNA 525

Query: 545  GMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
            G+E + + +   +     F VF++G+ +G+  +    V  LR  RR+  + + V +    
Sbjct: 526  GVEDIREVSGNPINNPNVFLVFINGNVLGLTLNHKHLVRNLRYMRRKGRMGSFVSVHTSY 585

Query: 603  LQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIELVGTEEE 656
             Q  + I  D GR+ RP ++VE          +  LE     F   L  G+IE +   EE
Sbjct: 586  TQRCIYIHTDGGRLCRPYIIVEKRRPRVKQFHLDELERGVRKFDDFLLDGLIEYLDVNEE 645

Query: 657  EDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKH 716
             D   AW  ++    IE+      TH E++   LLG+  G++P+ +H+ + R  YQ    
Sbjct: 646  NDSFIAWNEEH----IEEGT----THLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAM- 696

Query: 717  SSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQN 776
              QA+G    N   R+D+L + L YPQ P+ +T   +           +    +L  GQN
Sbjct: 697  GKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVKTKTIE-----------LTNFDKLPAGQN 745

Query: 777  AIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRR----SSDDM 832
            A VAV    GY+ ED+L++N+AS++RG  R    ++ K  V     Q   R      D +
Sbjct: 746  ATVAVMSFSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPVKDAL 805

Query: 833  VNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHS-------------- 878
             N       I + D LD DG    G  + +  I+I K   +    +              
Sbjct: 806  TN-----KVIFKHDVLDTDGIVAPGEQILNKQIMINKEMPAVTSLNPLEGQSTQVPYTAV 860

Query: 879  -IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQE 937
             I  K  E   V++V++S+N +      + LRQ R P +GDKFSS HGQKGV G +  QE
Sbjct: 861  PISYKGPEPSYVERVMVSANSEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLIVDQE 920

Query: 938  NFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPS 997
            + P+   GI PD+++NPH FPSR T G+ LE   GK       G+  G   Y T F    
Sbjct: 921  DMPYNDSGICPDMIMNPHGFPSRMTVGKTLELLGGKA------GVLEGKFHYGTAFGGSK 974

Query: 998  VDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPV 1057
            V  I  +L R GF+  G +  Y G TG  +++ I+ GP +YQ+L HM +DK+  R  GP 
Sbjct: 975  VGDIQAELERHGFNYMGKDFFYSGITGAPLQAYIYSGPVYYQKLKHMVQDKMHARARGPK 1034

Query: 1058 HPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVAN 1117
              LTRQP   R R GG++ GEMERDCLI++GA+  + ERL   SD++++ +CR C     
Sbjct: 1035 AVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTC----- 1089

Query: 1118 VIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                    GR     +C  C S   + K ++PY  KLL QEL SM +  K   E
Sbjct: 1090 --------GRLAYCSWCHFCQSSAHVSKISMPYACKLLFQELTSMNVVPKMILE 1135


>gi|6606089|gb|AAF19057.1|AF107785_1 DNA-dependent RNA polymerase II RPB140 [Agaricus bisporus]
          Length = 914

 Score =  491 bits (1263), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 323/949 (34%), Positives = 494/949 (52%), Gaps = 108/949 (11%)

Query: 201  AEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEK 255
            +EKV +AQE++    ++V      + + +    +S  ++    +    +  F   +  E+
Sbjct: 1    SEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFH--RNQER 58

Query: 256  VLS---VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD 312
             +S   + ++  +IPIW++F  LGV SD++I+  I +  +D  +L +L   I D     D
Sbjct: 59   SVSFTTIPYIKVDIPIWVVFRGLGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQD 118

Query: 313  EFRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLH----GTKQKARFL 361
                   AL ++    +GTT   G S E       E +   + P +        +KA F 
Sbjct: 119  R----EVALDFIGN--RGTT--TGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFF 170

Query: 362  GYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYG 421
            GYM+  LL A   RR+ D+RD F  KRL+LAG LL    ++      K + + LQ+ +  
Sbjct: 171  GYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVET 230

Query: 422  DRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRR 481
             +    +   +    +TNGL  + +TG W    K     +G+   L R     TL  LRR
Sbjct: 231  HKEFN-LALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRR 289

Query: 482  TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQ 540
                +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  S   P+ E 
Sbjct: 290  CNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEF 349

Query: 541  LFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKR 600
            L   G+E L ++A +S     KVFV+G W+GV +D  + V  +++ RR+ ++  +V + R
Sbjct: 350  LEEWGLESLEENA-HSTSPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVR 408

Query: 601  DELQSEVRIFMDAGRILRPLLVVEN----MGK--IKSL------EGKNYTFQALLDHGII 648
            D  + E+RI+ DAGR+ RPL +VEN    +GK  I+ L      EG  Y ++ L+  G+I
Sbjct: 409  DIREKELRIYTDAGRVCRPLFIVENQQLLLGKRHIRWLNSGSDDEGNEYKWEQLIKGGVI 468

Query: 649  ELVGTEEEEDCCTAWGIKYLLKDIEDKK--------------------------PIKFTH 682
            EL+  EEEE       I    +D+E+ +                             +TH
Sbjct: 469  ELLDAEEEETVM----ISMTPEDLENSRLQAAGVDPHANDGDFDPAARLKAGTHAHTWTH 524

Query: 683  CELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYP 742
            CE+  S +LG+   IIPF +H+ + R  YQS   + QA+G   TN  IR+DT+++ L+YP
Sbjct: 525  CEIHPSMILGICASIIPFPDHNQSPRNTYQSAM-AKQAMGIYLTNFLIRMDTMANILYYP 583

Query: 743  QRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLER 802
            Q+PL  T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++S++R
Sbjct: 584  QKPLATTRSME-----------YLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDR 632

Query: 803  GMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQS 862
            G+FRS + RSY  +++ K    +    +       ++ K G  D L+DDG    G  ++ 
Sbjct: 633  GLFRSIYYRSY-MDLEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVRG 691

Query: 863  GDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVS 907
             DI+IGK A                +  D S  LK TE G+V +V++++N +G+ F  V 
Sbjct: 692  EDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTEIGIVDQVLITTNSEGQKFVKVR 751

Query: 908  LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLL 967
            +R  R P +GDKF+S HGQKG +G    QE+ PFT +GIVPD++INPHA PSR T G L+
Sbjct: 752  VRATRIPQIGDKFASCHGQKGTVGITYRQEDMPFTAEGIVPDLIINPHAIPSRMTIGHLV 811

Query: 968  EAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMV 1027
            E  L K    +G       +  ATPF   +V++++  L + G+   G E +Y G TG  +
Sbjct: 812  ECLLSKVATLIGN------EGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTGRKL 865

Query: 1028 RSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKF 1076
            ++ I++GPT+YQRL HM +DK+  R  GPV  LTRQPV  R R GG++F
Sbjct: 866  QAQIYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 914


>gi|328853924|gb|EGG03059.1| hypothetical protein MELLADRAFT_49581 [Melampsora larici-populina
            98AG31]
          Length = 1135

 Score =  490 bits (1262), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 368/1202 (30%), Positives = 553/1202 (46%), Gaps = 159/1202 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+S+N F+   L KA      T+V    DP+           + +  +
Sbjct: 27   AFLKVKGLVKQHIDSFNYFVDVEL-KAILRANATVVS-DVDPN---------FHLTYLDI 75

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             + +P            + P   RL+++TYS+ + V +Q   YT+               
Sbjct: 76   NVGEPCRLDTGSATNKRITPHECRLRDITYSAPISVTIQ---YTKG-------------- 118

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
              K VLS     I IGR+P+M++S+ C +         +  +C  D GGYF++KG EKV 
Sbjct: 119  -NKRVLSK---GIPIGRMPIMLRSNKCVLTNKSDAELAKMTECPLDPGGYFVVKGTEKVI 174

Query: 206  VAQEQICLKRLWVSNS------MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            + QEQ+   R+ +         M    +   E K    +V           K  +  L  
Sbjct: 175  LVQEQLSKNRILIETDSRKGTIMASVTSSTHERKSKTYVV----------TKNSKVYLKH 224

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDC-SILNILFASIHDADNKCDEFRKGR 318
              +  EIP+ I   A G++SD E+V L+    +D  S  +I     H+A          +
Sbjct: 225  NSIQEEIPVVIALKAYGITSDNEVVQLVCGNNDDYRSTFSICIEQCHEAG-----IYTQK 279

Query: 319  NALKYVDKLIK--------GTTFPPGESTEECMNTYLFPSLHG----TKQKARFLGYMVK 366
             AL+Y+ K +K            P  E   E ++T +   +       + KA +L  M +
Sbjct: 280  QALEYIGKSVKVMKKGPMVTVKRPLSEEALEVLSTVVLAHVPAENMNLQPKALYLAVMAR 339

Query: 367  CLLQAYSGRRKCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKRMAKAL 415
             ++QA +  +  D+RD   NKRLELAG+LL             +LK++I    K+  +  
Sbjct: 340  RVIQAMANPKLVDDRDYVGNKRLELAGQLLSLLFEDLFKKFNTDLKMNIDKILKKPNRTT 399

Query: 416  QRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQT 475
            + D          ++ +    +++G  RA STG WS    + ER +GI   L R + +  
Sbjct: 400  EFDAIN-------QFRMHGDHISHGFIRAISTGNWSIKRFKMER-AGITHVLSRLSYISA 451

Query: 476  LVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-L 534
            L  + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T +  
Sbjct: 452  LGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVDE 511

Query: 535  EPIFEQLFNSGMEKLAD--DASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL 592
            EPI+   +  G E ++        L   + VF++G+ +G+ +    FV   R+ RR  ++
Sbjct: 512  EPIWNVAYTIGCEDISSVTGTELYLPRHYIVFINGNILGLSRSPERFVKVFRQFRRAGQV 571

Query: 593  PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHG 646
               V I  +  Q  V I  D GRI RP+++V++         I+ L+     F   L  G
Sbjct: 572  SEFVSIYMNSDQQTVNIATDGGRICRPMIIVDHGVPRVTSSHIQLLKENKMCFDDFLTAG 631

Query: 647  IIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHA 706
            +IE +   EE D   A          E+      TH E++   LLG   G+IP+ +H+ +
Sbjct: 632  LIEYLDCNEENDSFIAL--------YEEDVDQFTTHLEIEPFTLLGAVAGLIPYPHHNQS 683

Query: 707  RRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHIL 766
             R  YQ      QAIG    N   R+DTL + + YP  P+ RT   + +G          
Sbjct: 684  PRNTYQCAM-GKQAIGAIAYNQLHRIDTLLYLMVYPHHPMVRTKTIELVG---------- 732

Query: 767  PRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKR 826
               +L  GQNA VAV  + GY+ ED+L++N+ASL+RG  R +  R   A +         
Sbjct: 733  -YDKLPAGQNATVAVMSYSGYDIEDALILNKASLDRGFGRCQVFRKATAMIKRYPNGTYD 791

Query: 827  RSSDDMVNF-GKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA-DHSI----- 879
            R +D   +  G+I  K       D+ G   +G  + SG++ + K   S A D+S+     
Sbjct: 792  RIADPPRDTDGQILEKW---KPCDEGGVADVGMKVFSGNVYVNKQTPSNANDNSVAGGAA 848

Query: 880  ------KLKHTERGMV----QKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGV 929
                      T RG +     KV+++  +  +    V LRQ R P LGDKFSS HGQKGV
Sbjct: 849  TVTAWNNTPMTYRGTIPSYIDKVLVTDTESDQTLVKVLLRQTRRPELGDKFSSRHGQKGV 908

Query: 930  LGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRY 989
             G +  QE+ PF   G  PDI++NPH FPSR T G++LE   GK       G+  G   Y
Sbjct: 909  CGLIVQQEDMPFNDHGSCPDIIMNPHGFPSRMTVGKMLELLSGKA------GVLRGTVEY 962

Query: 990  ATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKV 1049
             T F       +++ L   G+S  G + L  G TG+ +   +F+GP +YQ+L HM  DK+
Sbjct: 963  GTAFGGSKAVEMSKILIEHGYSYLGKDYLTSGITGQALEHYVFMGPIYYQKLKHMVLDKM 1022

Query: 1050 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHIC 1109
              R  GP   LTRQP   R R GG++ GEMERDCLIAHGA+  L ERL   SD++++ +C
Sbjct: 1023 HARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAHGASQLLLERLMISSDAFELDVC 1082

Query: 1110 RKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFD 1169
            + C             G      +C  C +G  + K  +PY  KLL QEL +M I  +  
Sbjct: 1083 QDC-------------GFMGYSGWCVRCKNGKSVTKITIPYACKLLFQELMAMNIAPRLV 1129

Query: 1170 TE 1171
             E
Sbjct: 1130 LE 1131


>gi|395327723|gb|EJF60120.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Dichomitus squalens LYAD-421 SS1]
          Length = 1142

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 366/1186 (30%), Positives = 553/1186 (46%), Gaps = 136/1186 (11%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETI--VEPGYDPSKKGEGEWRYASMRFG 89
            +F    GLV   I+S+N F+   ++    +  +    V+P +         W    +++ 
Sbjct: 39   AFLKVKGLVKQHIDSFNYFVDVDIKNILKANNKVTSDVDPRF---------W----LKYT 85

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
             + +  P     +  D+  + P   RL++ TYS+ + V +Q   YT+ +    +      
Sbjct: 86   DIVVGFPDRTDADAIDK-SVTPHECRLRDTTYSAPILVTIQ---YTRGKTVVRR------ 135

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG------DCDFDHGGYFIIKGAEK 203
                         N+ IGR+P+M++S+ C + G  +       +C  D GGYFI+KG EK
Sbjct: 136  ------------ANVNIGRLPIMLRSNKCVLTGRNEAQLARMTECPLDPGGYFIVKGTEK 183

Query: 204  VFVAQEQICLKRLWVS--NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYF 261
            V + QEQ+   R+ V    + G   A  + +    L  +      +   K G+  L    
Sbjct: 184  VILVQEQLSKNRIIVEIDPTKGVVQASCTSSTHGGLKSK-----TYVATKKGKIYLRHNS 238

Query: 262  LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNAL 321
            +  ++PI I   ALG+ SDKEI+ L   T  +       F+   +   K   F +   AL
Sbjct: 239  IHEDVPIAIALKALGIQSDKEILLL---TAGNHEAYKSAFSPNLEEAAKLGVFTR-HQAL 294

Query: 322  KYVDKLIK------GTTFPPGESTEECMNTYLFP--SLHGT--KQKARFLGYMVKCLLQA 371
            +++   +K      G   P  E   E + T +     +HG   + KA F+  M + +L A
Sbjct: 295  EWIGSRVKVNRRVVGPRRPSWEEALEALATIVLAHVPVHGLDFRPKAVFVATMTRRVLMA 354

Query: 372  YSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDRTVRP 427
                +  D+RD   NKRLELAG+LL    E   K   A+ +  + K L++          
Sbjct: 355  MDDEKMVDDRDYVGNKRLELAGQLLALLFEDLFKTFNANLKAAIDKVLKKPSRTSEFDAF 414

Query: 428  IEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQ 487
                     +T G  RA STG WS    + +R +G+   L R + +  L  + R   Q +
Sbjct: 415  NTMQFQGDHITAGFVRAISTGNWSLKRFKMDR-AGVTHVLSRLSFISALGMMTRISSQFE 473

Query: 488  YTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGM 546
             T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + E PI    F  G+
Sbjct: 474  KTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVEEEPIIRIAFMLGV 533

Query: 547  EKLADDASYSLGG--KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQ 604
            E ++      + G   F V V+G  IG+ +    FVS  RR RR       V +  +   
Sbjct: 534  EDISLATGAEIYGPHTFVVNVNGSIIGLTRYPARFVSNFRRLRRAGRFSEFVSVYINHHH 593

Query: 605  SEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEED 658
              V I  D GRI RP+++VEN         I  L+    TF   L  G++E +   EE D
Sbjct: 594  RTVLIASDGGRICRPMIIVENGRPKVTSEHIAQLKQGQLTFDDFLRKGLVEYLDVNEEND 653

Query: 659  CCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSS 718
               A   K ++           TH E++   LLG   G+IP+ +H+ + R  YQ      
Sbjct: 654  SYIALYEKDIVPGT--------THLEIEPFTLLGAVAGLIPYPHHNQSPRNTYQC-AMGK 704

Query: 719  QAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAI 778
            QAIG    N   R+DTL +   YPQ+P+ +T   + +G              L  GQNA 
Sbjct: 705  QAIGAIGYNQLNRIDTLLYLSVYPQQPMVKTKTIELIG-----------YDRLPAGQNAT 753

Query: 779  VAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVN-FGK 837
            VAV  + GY+ ED+L++N+ASL+RG  R + +R     +         R +D  ++  G+
Sbjct: 754  VAVMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLIRKYPNGTFDRLADAPLDENGQ 813

Query: 838  IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH--------SIKLKHTE---- 885
            +Q K    D +  DG   +G  +  GD+ I K   + A+         ++  K+T     
Sbjct: 814  VQKK---YDIVQTDGLAGVGERVDPGDVYINKQTPTNANDNSFTGQAATVPYKNTPMTYK 870

Query: 886  ---RGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT 942
                G + KV+++  ++ +    V +RQ R P LGDKFSS HGQKGV G + +QE+ PF 
Sbjct: 871  SPVAGQIDKVMVTDTENDQTLIKVLIRQTRRPELGDKFSSRHGQKGVCGLIVNQEDMPFN 930

Query: 943  IQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAIT 1002
             QGIVPD ++NPH FPSR T G+++E   GK       G+ +G  +Y T F    V+ ++
Sbjct: 931  DQGIVPDTIMNPHGFPSRMTVGKMIELLAGKA------GVLAGKLQYGTAFGGSKVEDMS 984

Query: 1003 EQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTR 1062
              L   GFS  G + L  G TGE + + ++ GP +YQ+L HM  DK+  R  GP   LTR
Sbjct: 985  RILVENGFSYAGKDMLTSGITGEPLEAYVYFGPIYYQKLKHMVMDKMHARARGPRATLTR 1044

Query: 1063 QPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRV 1122
            QP   R R GG++ GEMERDCLI +GA   L ERL   SD +Q+  C +C          
Sbjct: 1045 QPTEGRSREGGLRLGEMERDCLIGYGATQLLLERLMISSDQFQVDACEEC---------- 1094

Query: 1123 VGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
               G      +C  C S   + +  +PY AKLL QEL +M +  + 
Sbjct: 1095 ---GLLGYNGWCPYCKSSKKMAQLTIPYAAKLLFQELMAMNVVPRL 1137


>gi|169597943|ref|XP_001792395.1| hypothetical protein SNOG_01766 [Phaeosphaeria nodorum SN15]
 gi|160707624|gb|EAT91415.2| hypothetical protein SNOG_01766 [Phaeosphaeria nodorum SN15]
          Length = 1443

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 366/1198 (30%), Positives = 562/1198 (46%), Gaps = 157/1198 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++SYN F+   L+K   +     V   +DP            + +  +
Sbjct: 342  AFLKTKGLVKQHVDSYNHFVDVELKKIIKA--NRFVRSDFDPK---------FLLEYTDI 390

Query: 92   TLDKPSFFAGNGGDEH--DMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
             +  P+    +  D H   + P   RL++MTY++ + V +   VYT+    S K K    
Sbjct: 391  RVLSPNRQEEDDLDNHRSTVTPNECRLRDMTYAAPIVVDI---VYTRG---SAKVKR--- 441

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEK 203
                        T I IGR+P+M+KS+ C +            +C  D GGYFI +G EK
Sbjct: 442  ------------TGIKIGRMPIMLKSNKCVLAAKNDREMAVMDECPLDPGGYFITRGQEK 489

Query: 204  VFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLS 263
            V + QEQ+   R+ V ++ G   A  + +   R     V   K      G   L    LS
Sbjct: 490  VILVQEQLNKNRVIVESAKGIMQASVTSSTHERRTKTYVIQKK------GLMFLRHNTLS 543

Query: 264  TEIPIWILFFALGVSSDKEIVNLI---DFTCEDCSILNILFAS---IHDADNKCDEFRKG 317
             E+PI  +  ALGV SDKEI+ +I   D   +D   +N    +   IH  +         
Sbjct: 544  EEVPIVFVLKALGVHSDKEILLMIAGTDAAYQDSFAINFEACAREGIHTQEK-------- 595

Query: 318  RNALKYVDKLIKGTTFPPGES--------TEECMNTYLFP--SLHGT--KQKARFLGYMV 365
              AL+Y+   ++    P G S          EC+   + P   + GT  + KA ++  M 
Sbjct: 596  --ALEYIGHRVRLVKKPLGTSRMRNYHLEAIECLANVVLPHVPVEGTNYRPKALYVALMA 653

Query: 366  KCLLQAYSGRRKCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKRMAKA 414
            + +L A    +  D+RD   NKRLEL+G++L             + K+ I    K+  +A
Sbjct: 654  RRVLMAMQDPKLVDDRDYVGNKRLELSGQMLSLLFEDHFKRFNHDFKLSIDKVLKKQNRA 713

Query: 415  LQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQ 474
             + D +         + +  + +T G+ RA +TG WS    + +R +G+   L R + + 
Sbjct: 714  QEFDAFS-------HFSVHKNHITMGIERAIATGNWSLKRFKMDR-AGVTHVLSRLSYIA 765

Query: 475  TLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSIL 534
             L  + R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL +   ++T   
Sbjct: 766  ALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTEDD 825

Query: 535  E-PIFEQLFNSGMEKLADDASYSLG--GKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKE 591
            E P+ + +F  G E++       +   G + V ++G  I +      F++  R+ RR   
Sbjct: 826  EDPVRKIIFLLGAEEICSQTGEEIHREGVYSVCLNGTPIAITDIPKRFLNSFRKLRRMGR 885

Query: 592  LPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDH 645
            +     I  +    EV +  D GRI RP++VVEN         +K+L      F+  L  
Sbjct: 886  ISEFTSIHINHDFCEVHVATDEGRICRPMIVVENQRSKVTGRYLKALRKGTMEFEDFLTR 945

Query: 646  GIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDH 705
            G++E + T EE D   A      LK+ +  +    TH E++   +LG   G+IP+ +H+ 
Sbjct: 946  GLVEYLDTNEENDTNIA------LKETDINQ--HTTHLEIEPFTILGAVAGLIPYPHHNQ 997

Query: 706  ARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHI 765
            + R  YQ      QAIG    N   R+DT+ + + YPQ P+ +T   +           +
Sbjct: 998  SPRNTYQCAM-GKQAIGAIAYNQFSRIDTILYLMVYPQEPMVKTRTIE-----------L 1045

Query: 766  LPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVK 825
                +L  GQNA VAV  + GY+ ED+L++N+AS +RG  R + ++       + +++  
Sbjct: 1046 TKYDKLPAGQNATVAVMSYSGYDIEDALILNKASCDRGFGRCQVMKKV-----SHQLKSY 1100

Query: 826  RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVI---------GKYADSGAD 876
               + D +N G ++       ++  DG   +GA +  GD  +         G  + +  D
Sbjct: 1101 ANGTSDRINAGALKVDDPTHQAIGQDGIAQVGARINQGDAFLLKAIPQDTAGPPSTTYKD 1160

Query: 877  HSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ 936
               K K  +   + KV ++ N+ G     +  RQ R P LGDKFSS HGQKG  G +  Q
Sbjct: 1161 KPEKYKLPDCSYIDKVCITENEAGTTLIKILNRQTRRPELGDKFSSRHGQKGTTGLIVQQ 1220

Query: 937  ENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP 996
            E+ PF  QGI PDI++NPH FPSR T G+++E   GK       G+ +G   Y T F   
Sbjct: 1221 EDMPFNDQGINPDIIMNPHGFPSRMTVGKMMELLSGKA------GVLNGTLEYGTAFGGS 1274

Query: 997  SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGP 1056
             V+ + + L   GFS  G + L  G TGE  +   F GP +YQ+L HM +DK+  R  GP
Sbjct: 1275 RVEDMADILVSKGFSYTGKDYLTSGITGEAHQFYTFFGPIYYQKLKHMVQDKMHARARGP 1334

Query: 1057 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVA 1116
               LTRQP   R R GG++ GEMERDCLIA+GA+  L ERL   SD++ + +C KC    
Sbjct: 1335 RAILTRQPTEGRARDGGLRLGEMERDCLIAYGASQLLLERLMISSDAHNVDVCEKC---- 1390

Query: 1117 NVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMG--ITLKFDTEF 1172
                     G+     YC++C+S   + +  +PY AKLL QEL SM   +T+    EF
Sbjct: 1391 ---------GQMGYSGYCKLCESEKAVRRITMPYAAKLLIQELGSMNVKVTIGLADEF 1439


>gi|449300576|gb|EMC96588.1| hypothetical protein BAUCODRAFT_33950 [Baudoinia compniacensis UAMH
            10762]
          Length = 1214

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 372/1196 (31%), Positives = 558/1196 (46%), Gaps = 151/1196 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN F    LQ       E +    Y  S   +  +    ++F  +
Sbjct: 112  AFLRVKGLVKQHIDSYNYFTDVALQ-------EIVRANRYIRSDAQKDRF----IQFTGI 160

Query: 92   TLDKPSFFAGNGGDEHD--MFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
             +  P+         H+  + P   RL++MTY++ + V   +   T  R           
Sbjct: 161  RVGNPNRQDDRDRTNHESPVTPNECRLRDMTYAAPIFVDYVWSSSTGLR----------- 209

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGAEK 203
                        TN +IGR+P+M++S  C + G  + D      C  D GGYFI++G EK
Sbjct: 210  ----------RKTNKMIGRMPMMLRSSKCVLSGRSEADMGMLNECSIDPGGYFIVRGQEK 259

Query: 204  VFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLS 263
            V + QEQ+   R+ V ++ G   A  + +  N      V    +  +K G  VL    L+
Sbjct: 260  VILVQEQLSKNRVIVESAKGIIQASVTSHTAN------VKTKTYVLLKKGLLVLKHNSLT 313

Query: 264  TEIPIWILFFALGVSSDKEIVNLI---DFTCEDCSILNILFASIHDADNKCDEFRKGRNA 320
             +IP+ I+  A+GV SD EI+ L    D T +D    N+  A++     +         A
Sbjct: 314  EDIPVAIVLRAMGVQSDHEILLLAAGNDATYQDEFAPNLEQAALEGVFTQ-------EQA 366

Query: 321  LKYVDKLIKGTTFP---------PGESTEECMNTYLFPSLH----GTKQKARFLGYMVKC 367
            L Y+    K   FP         P +   + +   + P +       + KA ++ +M + 
Sbjct: 367  LDYIASRFKPDRFPTFAGKASKSPKQQALDKLAGTIIPHVEVEGLNFRPKALYIAFMTRR 426

Query: 368  LLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRP 427
            +L A    +  D+RD   NKRLELAG++L    +       K++  ++ + L   +   P
Sbjct: 427  VLMAMHDPKLVDDRDYVGNKRLELAGQMLALLFEDLFKEVTKQIKLSMDKIL---KKHNP 483

Query: 428  IEYY-------LDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLR 480
             + +       L  S +T GL RA STG W+    R +R +G+   L R + +  L  + 
Sbjct: 484  TQEFDPERLIDLSESRITTGLERAISTGNWALKRFRMDR-AGVTHVLSRLSYISALGMMT 542

Query: 481  RTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFE 539
            R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL +   ++TS  E PI  
Sbjct: 543  RITSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTSDDEAPIRR 602

Query: 540  QLFNSGMEKLADDASYSL--GGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVE 597
              F+ G E +   +   +   G + +FV+G  + + +    F+   R+ RR   +   V 
Sbjct: 603  MAFSLGAEDVTSASGTEVYSAGAYIIFVNGTPVALTRQPKQFLVAFRKFRRMGRISEFVS 662

Query: 598  IKRDELQSEVRIFMDAGRILRPLLVVENMGKIK-------SLEGKNYTFQALLDHGIIEL 650
            I  +   + V I  D GRI RPL+VVEN GK K       SL      F   L  GI+E 
Sbjct: 663  IYINHHHNGVHIATDEGRICRPLIVVEN-GKSKVNARFLDSLRKGTMGFDDALSRGIVEY 721

Query: 651  VGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVL 710
            +   EE D   A          ED      TH E++   +LG   G+IP+ +H+ + R  
Sbjct: 722  LDVNEENDSNIAV--------YEDGITQHTTHLEIEPFTILGAVAGLIPYPHHNQSPRNT 773

Query: 711  YQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPE 770
            YQ      QAIG    N   R+DTL + + YPQ+P+  T   +           ++   +
Sbjct: 774  YQC-AMGKQAIGAIAYNQFTRIDTLLYLMVYPQKPMVSTRAIE-----------LVKYDK 821

Query: 771  LYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSD 830
            L  GQNAIVAV  + GY+ ED+LV+N+AS +RG  R +  +       N +++     + 
Sbjct: 822  LPAGQNAIVAVMSYSGYDIEDALVLNKASCDRGFGRCQVFKKI-----NVQLKTYGNGAT 876

Query: 831  DMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGD------------IVIGKYADSGADHS 878
            D V  G+  +    V  L  DG    G  L +GD            + +   A   A   
Sbjct: 877  DRVT-GRDDANPKHV-KLGKDGIIEAGMQLAAGDTYMLKEKPLQQSVSVAASAQIWAPEH 934

Query: 879  IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQEN 938
            +  K  +     KV++ + +       +  RQ R P +GDKFSS HGQKGV+G +  Q +
Sbjct: 935  MSYKLPDPCYADKVMVGTTESNHTIFKIQTRQTRRPEVGDKFSSRHGQKGVVGIIAEQAD 994

Query: 939  FPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSV 998
             PF+  GI PDI++NPH FPSR T G++LE   GK       G+  G + Y T F    V
Sbjct: 995  MPFSDSGITPDIIMNPHGFPSRMTVGKMLELVAGKA------GVLKGTQEYGTAFGGSKV 1048

Query: 999  DAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVH 1058
            + +  +L R GFS  G + +  G TGE + + +F GP +YQ+L HM +DK+  R+TGP  
Sbjct: 1049 EEMGNELIRQGFSYSGKDCVTSGITGESLPAYVFFGPIYYQKLKHMVQDKMHARSTGPRA 1108

Query: 1059 PLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANV 1118
             LTRQP   R R GG++ GEMERDCLIA+GA+  L ERL   SD++++ +C  C      
Sbjct: 1109 ILTRQPTEGRSRAGGLRLGEMERDCLIAYGASQLLLERLMLSSDAHEVDVCETC------ 1162

Query: 1119 IQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI--TLKFDTEF 1172
                   G      +C  C S   +VK  +PY AKLL QEL SM +  +L+ + EF
Sbjct: 1163 -------GMMGYNNWCTSCSSSVGVVKMTMPYAAKLLIQELLSMNVKASLQLEDEF 1211


>gi|392563480|gb|EIW56659.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Trametes versicolor FP-101664 SS1]
          Length = 1143

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 365/1186 (30%), Positives = 554/1186 (46%), Gaps = 136/1186 (11%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETI--VEPGYDPSKKGEGEWRYASMRFG 89
            +F    GLV   I+S+N F+   ++    +  +    V+P +         W    +++ 
Sbjct: 40   AFLKVKGLVKQHIDSFNYFVDVDIKNILKANNKVTSDVDPRF---------W----LKYT 86

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
             + +  P     +  D+  + P   RL++ TY + + V +Q   YT+ +    +      
Sbjct: 87   DIVVGFPDRTDADAIDK-SVTPHECRLRDTTYGAPILVTIQ---YTRGKSVVRR------ 136

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG------DCDFDHGGYFIIKGAEK 203
                         N+ IGR+P+M++S+ C + G  +       +C  D GGYFI+KG EK
Sbjct: 137  ------------ANVNIGRLPIMLRSNKCVLTGRTEAQLARMTECPLDPGGYFIVKGTEK 184

Query: 204  VFVAQEQICLKRLWVS--NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYF 261
            V + QEQ+   R+ V    + G   A  + +    L  +      +   K G+  L    
Sbjct: 185  VILVQEQLSKNRIIVEVDPTKGVVQASCTSSTHGGLKSK-----TYVATKKGKIYLRHNS 239

Query: 262  LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNAL 321
            +  ++PI I   ALG+ SDKEI+ L   T  +       FA   +   K   F +   AL
Sbjct: 240  IHEDVPIVIALKALGIQSDKEILLL---TAGNHEAYKSSFAPNLEDAAKLGVFTR-HQAL 295

Query: 322  KY------VDKLIKGTTFPPGESTEECMNTYLFPSLHGT----KQKARFLGYMVKCLLQA 371
            ++      V++ + G   P  E   E + T +   +  +    + KA F+  M + +L A
Sbjct: 296  EWIGSRVKVNRRVMGPRRPAWEEALEALATIVLAHVPVSGLDFRSKAVFVATMTRRVLMA 355

Query: 372  YSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDRTVRP 427
                +  D+RD   NKRLELAG+LL    E   K   A+ +  + K L++          
Sbjct: 356  MDDEKMVDDRDYVGNKRLELAGQLLALLFEDLFKTFNANLKAAIDKVLKKPSRTSEFDAF 415

Query: 428  IEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQ 487
                     +T+G  RA STG WS    + ER +G+   L R + +  L  + R   Q +
Sbjct: 416  NTMQFQGDHITSGFVRAISTGNWSLKRFKMER-AGVTHVLSRLSFVSALGMMTRISSQFE 474

Query: 488  YTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-LEPIFEQLFNSGM 546
             T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T +  EPI    F  G+
Sbjct: 475  KTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVDEEPIIRIAFMLGV 534

Query: 547  EKLADDASYSLGG--KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQ 604
            E ++      + G   F V V+G  IG+ +    FVS  RR RR       V +  +   
Sbjct: 535  EDISLATGTEIYGPHTFVVNVNGTIIGLTRYPARFVSNFRRLRRAGRFSEFVSVYINHHH 594

Query: 605  SEVRIFMDAGRILRPLLVVEN-----MGK-IKSLEGKNYTFQALLDHGIIELVGTEEEED 658
              V I  D GRI RP+++VE+     M + I  L+    TF   L  G++E +   EE D
Sbjct: 595  RTVLIASDGGRICRPMIIVESGRPKVMSEHIAQLKQGQLTFDDFLRKGLVEYLDVNEEND 654

Query: 659  CCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSS 718
               A   K ++           TH E++   LLG   G+IP+ +H+ + R  YQ      
Sbjct: 655  SYIALYEKDIVPGT--------THLEIEPFTLLGAVAGLIPYPHHNQSPRNTYQC-AMGK 705

Query: 719  QAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAI 778
            QAIG    N   R+DTL +   YPQ+P+ +T   + +G              L  GQNA 
Sbjct: 706  QAIGAIGYNQLNRIDTLLYLSVYPQQPMVKTKTIELIG-----------YDRLPAGQNAT 754

Query: 779  VAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVN-FGK 837
            VAV  + GY+ ED+L++N+ASL+RG  R + +R     +         R +D  V+  G+
Sbjct: 755  VAVMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLIRKYPNGTYDRLADAPVDETGQ 814

Query: 838  IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHS---------------IKLK 882
            +Q K    D +  DG   +G  +  GD+ I K   + A+ +               +  K
Sbjct: 815  VQKK---YDIIQPDGLAGVGERVDPGDVYINKQTPTNANDNSFTGQAATVPYKNAPMTYK 871

Query: 883  HTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT 942
                G + KV+++  ++ +    V +RQ R P LGDKFSS HGQKGV G + +QE+ PF 
Sbjct: 872  SPVAGQIDKVMITDTENDQTLIKVLIRQTRRPELGDKFSSRHGQKGVCGLIVNQEDMPFN 931

Query: 943  IQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAIT 1002
             QGIVPD ++NPH FPSR T G+++E   GK       G+ +G  +Y T F    V+ ++
Sbjct: 932  DQGIVPDTIMNPHGFPSRMTVGKMIELLAGKA------GVLAGKLQYGTAFGGSKVEDMS 985

Query: 1003 EQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTR 1062
              L   GFS  G + L  G TGE + + ++ GP +YQ+L HM  DK+  R  GP   LTR
Sbjct: 986  RILIEKGFSYAGKDMLTSGITGEPLEAYVYFGPIYYQKLKHMVMDKMHARARGPRATLTR 1045

Query: 1063 QPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRV 1122
            QP   R R GG++ GEMERDCLI +GA   L ERL   SD +Q+  C++C          
Sbjct: 1046 QPTEGRSREGGLRLGEMERDCLIGYGATQLLLERLMISSDQFQVDACQEC---------- 1095

Query: 1123 VGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
               G      +C  C S   + +  +PY AKLL QEL +M +  + 
Sbjct: 1096 ---GLLGYNGWCPYCKSSKKMAQLTIPYAAKLLFQELMAMNVVPRL 1138


>gi|6606091|gb|AAF19058.1|AF107786_1 DNA-dependent RNA polymerase II RPB140, partial [Neolecta vitellina]
          Length = 930

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 331/964 (34%), Positives = 493/964 (51%), Gaps = 122/964 (12%)

Query: 201  AEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE-----NKRNRLI----VRLVDMSKFEDI 250
            +EKV +AQE+     + V + S    +++ +E      K +RLI    ++L+   +   +
Sbjct: 1    SEKVIIAQERSAANTVQVFTKSAPSPLSHVAEVRSAVEKGSRLISSLQIKLLRNPQKTSV 60

Query: 251  KGGEKV-LSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADN 309
              G  +  ++ ++  +I I I+F ALGV +D+EI+  I F   D  +L +L   I +A  
Sbjct: 61   SNGRLIKATLPYIKDDIDIVIVFRALGVLADREILEHICFDPNDHQMLELLKPCIEEAF- 119

Query: 310  KCDEFRKGRNALKYVDKLIKGTTFPPGE---STEECMNTYLFPSLHGTK----QKARFLG 362
                 ++   AL Y+ K  + T            E M   L P +  T+    +KA FLG
Sbjct: 120  ---VIQEKDLALDYIGKRGQTTGLSRDRRIRHAREIMQKELLPHVSQTEGYESRKAFFLG 176

Query: 363  YMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGD 422
            YMV  LL     RR+ D+RD F  KRL+LAG LL    ++      K + + +Q+ +  +
Sbjct: 177  YMVHRLLLVALERREQDDRDHFGKKRLDLAGPLLANLFRMLFKKLYKDVYRYMQKCVENN 236

Query: 423  RTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
            R    +   + A  +T GL  + +TG W    K  +   G+   L R     TL  LRRT
Sbjct: 237  REFN-LTLAVKAPTITQGLKYSLATGNWGEQKKAAQAKVGVSQVLNRYTFASTLSHLRRT 295

Query: 483  RQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTS-ILEPIFEQL 541
               +   GK+   R  H SHWG +C   TP+G+ CGLVKNL +   +S      P+ E L
Sbjct: 296  NTPIGRDGKIAKPRQLHNSHWGLVCPAETPEGQACGLVKNLALMSYISVGGPSAPLIEFL 355

Query: 542  FNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
               GME L D +  S     K+FV+G W+GV +D+ S V+ +R  RRR ++  ++ I RD
Sbjct: 356  EEWGMESLEDYSPSSTPNTTKIFVNGVWLGVHRDAGSLVNTVRNLRRRVDISPEITIVRD 415

Query: 602  ELQSEVRIFMDAGRILRPLLVVEN----------MGKIKSLEGKN-------------YT 638
              + E+R+F DAGR++RPL +V+N          M + + +E  N             + 
Sbjct: 416  IRERELRLFTDAGRVMRPLFIVDNDEHSPRKNFLMLQRQHVETINEHKDNPEIPDHERWN 475

Query: 639  FQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIK------------------- 679
            F  L+++GIIE +  EEEE    A       KD+E  + +K                   
Sbjct: 476  FSKLIENGIIEYIDAEEEETAMIAM----TRKDLESWRKMKEGFQIEEEFDPASRVEPPP 531

Query: 680  ------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVD 733
                  +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+D
Sbjct: 532  NPNIAMYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAM-GKQAMGVFLTNYQLRMD 590

Query: 734  TLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSL 793
            T+++ L+YPQ+PL  T   + L              +L  GQNAIVA+  + GYNQEDS+
Sbjct: 591  TMANILYYPQKPLATTRSMEYLK-----------FRDLPAGQNAIVAILCYSGYNQEDSV 639

Query: 794  VMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK------IQSKIGRVDS 847
            +MN++S++RG+FRS   R Y  +     MQV       M  F K      ++ K G  + 
Sbjct: 640  IMNQSSIDRGLFRSMFYRCYNDQEKKIGMQV-------MEEFEKPTRQTTLRLKHGTYEK 692

Query: 848  LDDDGFPFIGANLQSGDIVIGKYADSGADH---------------SIKLKHTERGMVQKV 892
            L++DG    G  +   DI+IGK A    D                S  L+ TE G+V  V
Sbjct: 693  LEEDGLIAPGIRVSGEDIIIGKTAPISPDTQELGQRTSHHTKRDVSTPLRSTENGIVDHV 752

Query: 893  VLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVI 952
            V+++N +G  F  V +R  R P +GDKF+S HGQKG +G     E+ PF+ QG+VPD++I
Sbjct: 753  VVTTNQEGLKFVKVRMRSTRVPQIGDKFASRHGQKGTIGITYRHEDMPFSAQGVVPDLII 812

Query: 953  NPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSK 1012
            NPHA PSR T   L+E  L K ++A+G     G +  ATPF   +V+ +++QL   GF  
Sbjct: 813  NPHAIPSRMTVAHLIECQLSK-VSAMG-----GYEGDATPFTEVTVEQVSQQLRNQGFQS 866

Query: 1013 WGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFG 1072
             G E +Y+G TG+ + + +F+GPT+YQRL HM +DK+  R  GPV  LTRQPV  R R G
Sbjct: 867  RGFEVMYNGHTGKKLMAQVFLGPTYYQRLKHMVDDKIHARARGPVQILTRQPVEGRSRDG 926

Query: 1073 GIKF 1076
            G++F
Sbjct: 927  GLRF 930


>gi|296243132|ref|YP_003650619.1| DNA-directed RNA polymerase subunit B' [Thermosphaera aggregans DSM
            11486]
 gi|296095716|gb|ADG91667.1| DNA-directed RNA polymerase, subunit B' ;DNA-directed RNA polymerase,
            subunit B' [Thermosphaera aggregans DSM 11486]
          Length = 1163

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 385/1233 (31%), Positives = 598/1233 (48%), Gaps = 200/1233 (16%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
            +F E GLV   ++SY+ FI+  L +    F E    P  +  K    ++R          
Sbjct: 17   YFEEKGLVRQHLDSYDRFIRELLPEMLKEFKEI---PITEDVKITIVDYR---------- 63

Query: 93   LDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYI 152
            +++P +    G  E    P   RL+N+TY++ + VK+++          D+    +EQ +
Sbjct: 64   IEEPKWITLEGIPERKT-PMECRLRNLTYAAPVMVKIKY---------VDESGRSKEQEL 113

Query: 153  QKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVFV 206
            +   L D         +PVM+KS +  +  +        G+   D GGYFII G+EKV V
Sbjct: 114  K---LMD---------LPVMLKSSIDPLSKMTPEELTSIGEDPKDPGGYFIINGSEKVLV 161

Query: 207  AQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSK-------FEDIKGGEKVLSV 259
            AQE +       SN++   VA   E      + +++ +SK        E  K G      
Sbjct: 162  AQEDLA------SNNIITDVA--PEGSSYTHLAKIISVSKGKRSQLVIERRKDG--TFYA 211

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADN--KCDEFRKG 317
             F   +IP+ +L  ALG+  + EI+  +     +  I   +F SI +       +   +G
Sbjct: 212  NFQGHKIPVIVLMKALGLVGEDEILYAVSL---NSDIQLHMFPSIQEVSKIFPREPLPEG 268

Query: 318  RN------------------ALKYVDKLIKGTTFPPGESTEE-------CMNTYLFPSLH 352
             +                  AL Y+     G+    G   EE        ++  L P + 
Sbjct: 269  LSPEEEERVLRERREKEVEEALDYI-----GSRIAIGRPREERIRRALRALDENLLPHI- 322

Query: 353  GTK-------QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIA 405
            GT        +KA F+G M+  +++ + G R+ D++D +RNKRL+LAG+LL   L+  + 
Sbjct: 323  GTDPSPETRIKKAVFIGQMISRIIELHLGFREPDDKDHYRNKRLKLAGDLLSVLLRTALL 382

Query: 406  HARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVA 465
               + + ++ ++ L  +R +  ++  +  S++T+ +  A +TG W  P  +T    G+  
Sbjct: 383  AFTRDLKESAEKYLAKNRKLD-LKMVVKPSVITDRILHAMATGNW--PGGKT----GVSQ 435

Query: 466  NLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV 525
             L R N L TL  LRR    +       +AR  H + WG++C   TP+G N GLVKNL +
Sbjct: 436  LLDRTNMLSTLSHLRRVVSPLSRGQPHFEARELHGTQWGRMCPFETPEGANIGLVKNLAL 495

Query: 526  TGLVSTSI----LEPIFEQLFNSGMEKLAD---------------DASYSLGGKF----- 561
               VS  +    +EPI  +     +  + D               +A    GG+      
Sbjct: 496  MVNVSVGVPESEIEPILYKHQVKPLITITDRATGKTVKGILDEVKEAVRKYGGELPSEYE 555

Query: 562  ---KVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIK--RDELQSEVRIFMDAGRI 616
               KV+++G  IG   +    V ELR+ RR+ +L  +V I   + E   EV +  D GRI
Sbjct: 556  GWSKVYLNGRLIGYHPNGEELVKELRKMRRQGKLSPEVNIAHIKTEYLDEVYVNTDPGRI 615

Query: 617  LRPLLVVENMGKIK-------SLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLL 669
             RPLLVVE  G+IK        L     +F+ L+  GIIE +  +EEE+   A  I    
Sbjct: 616  RRPLLVVEK-GEIKLTRTHLEKLRKGEISFEDLVHKGIIEYLDPDEEENAYIALSI---- 670

Query: 670  KDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPS 729
                D    + TH E+ +  +LG++  IIP+  H+ + R +YQ+   + Q++G  + N  
Sbjct: 671  ----DNITSEHTHAEIWIPAILGITASIIPYPEHNQSPRNMYQAAM-AKQSLGLYSANFQ 725

Query: 730  IRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQ 789
             R+DT  H L YPQ+PL +T   + +G     +N    RP    GQN +VAV    GYN 
Sbjct: 726  KRMDTRGHFLHYPQKPLVQTRSMEVIG-----YNE---RPA---GQNMVVAVLTFTGYNI 774

Query: 790  EDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIG--RVDS 847
            ED+L+MN++S +RG+ RS   R Y + V+ K M  ++   + ++    I+   G    + 
Sbjct: 775  EDALIMNKSSADRGLARSTFFRLY-STVEYKYMGGQQ--DEIVIPPTNIRGYRGLRAYEK 831

Query: 848  LDDDGFPFIGANLQSGDIVIGKYAD---------------SGADHSIKLKHTERGMVQKV 892
            L++DG       +  GD+++GK +                +  D S+ ++H E+G+V  V
Sbjct: 832  LEEDGIVAPETQVAGGDVLVGKISPPRFLGAQEYMLGAGLTKQDTSVVMRHEEKGIVDTV 891

Query: 893  VLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVI 952
            +++++++G     V +R +R P LGDKF+S HGQKGVLG L  Q + PFT  G+VPD+VI
Sbjct: 892  LITTDNEGNKLVKVRVRDLRIPELGDKFASRHGQKGVLGLLVPQYDMPFTEDGVVPDLVI 951

Query: 953  NPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSK 1012
            NPHAFPSR T GQL+E+  GK +AAL   +       ATPF    V  +   L R  +  
Sbjct: 952  NPHAFPSRMTVGQLIESIAGK-VAALEGRVVD-----ATPFHKTPVKDLEIVLKRHRYLP 1005

Query: 1013 WGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFG 1072
             G E +YDGRTGEM+ S +FIG  +YQ+L HM  DKV  R  GPV  LTRQP   R R G
Sbjct: 1006 SGEEVMYDGRTGEMISSPVFIGIVYYQKLHHMVSDKVHARARGPVQILTRQPTEGRSRAG 1065

Query: 1073 GIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGP 1132
            G+++GEME DCL+ HG +  L E +   SD  ++++C  C +        +G   + +G 
Sbjct: 1066 GLRWGEMEVDCLVGHGTSLLLRETILDRSDITRVYVCEICGH--------IGWYDRNKGK 1117

Query: 1133 Y-CRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
            Y C I      +    + Y  KLL QEL S G+
Sbjct: 1118 YLCPIHKEKGSLKPVEISYAFKLLLQELMSFGV 1150


>gi|120561277|gb|ABM27023.1| RNA polymerase II second largest subunit, partial [Neocallimastix
            frontalis]
          Length = 915

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 332/953 (34%), Positives = 503/953 (52%), Gaps = 115/953 (12%)

Query: 201  AEKVFVAQEQICLKRLWV-SNSMGWTVAYKSENKR---------NRLIVRLVDMSKF--- 247
            +EKV +AQE++    ++V + S     +Y +E +          + L ++++  +     
Sbjct: 1    SEKVLIAQERMASNVIYVFAKSPPSPYSYTAEIRSAVETGSRHASTLYIKMLAKASARAN 60

Query: 248  EDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA 307
             +I G     ++ ++  +IPI I+F ALG+  D++I+  I +   D  +L +L   I DA
Sbjct: 61   SEIVGQSIKATLPYIRQDIPIVIVFRALGIVPDRDILEHICYDFNDTQMLEMLKPCIEDA 120

Query: 308  DNKCDEFRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSL----HGTKQ 356
                D+      AL ++ K  +GTT   G + E       E +   L P +    H   +
Sbjct: 121  FVIQDK----EIALDFIGK--RGTTV--GVTKEKRMRYAAEILQKELLPHIGTKAHTETK 172

Query: 357  KARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQ 416
            KA F GYM+  LL A   RR+CD+RD F  KRL+LAG LL    ++        ++K+LQ
Sbjct: 173  KAYFFGYMIHRLLLAALERRECDDRDHFGKKRLDLAGPLLGSLFRMLFRKLTSDVSKSLQ 232

Query: 417  RDLYGDRTVRPIEYYLDASI----LTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANP 472
            + +  +R     E+ L+ +I    +T+GL  + +TG W    K  +  +G+   L R   
Sbjct: 233  KCIDRNR-----EFNLNVAIRPNTITDGLKYSLATGNWGAQSKFMQSRAGVSQVLNRYTF 287

Query: 473  LQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST- 531
              TL  LRR    +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   VS  
Sbjct: 288  ASTLSHLRRLNTPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSYVSVG 347

Query: 532  SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKE 591
            S   PI E L    ME + +     +    K+FV+G W+GV +D    V  LR  RR + 
Sbjct: 348  SSSAPIIEFLEEWSMENMEEVHVSHILNATKIFVNGVWVGVHRDPEHLVKTLRDLRRGQN 407

Query: 592  LPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN-----------MGKIKSLEGKNYTFQ 640
            +  ++ I RD  + E+RI+ DAGRI RPL +VEN           + + K+  G+ + + 
Sbjct: 408  VNAEISIVRDIRERELRIYTDAGRICRPLFIVENQKLKLKKSHIALIQEKNETGEGWGWD 467

Query: 641  ALLDHGIIELVGTEEEED---CCTAWGI--KYLLKDIED---KKPIK--------FTHCE 684
             L+++GIIE +  EEEE    C +   +  K    DI+D    K +K        +THCE
Sbjct: 468  DLIENGIIEFIDAEEEETTLICMSHEDLDPKDTEMDIQDYGISKRLKSRSVYSRNWTHCE 527

Query: 685  LDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQR 744
            +  S +LG+   I+PF +H+ + R  YQS     QA+G   TN  +R+DT+++ L+YPQ+
Sbjct: 528  IHPSMILGICASIVPFPDHNQSPRNTYQSAM-GKQAMGIYLTNFQLRMDTMANILYYPQK 586

Query: 745  PLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGM 804
            PL  T   +            L   +L  GQNAIVA+  + GYNQEDS++MN++S++RG+
Sbjct: 587  PLVTTRAME-----------YLRFRDLPAGQNAIVAIACYSGYNQEDSIIMNQSSIDRGL 635

Query: 805  FRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK------IQSKIGRVDSLDDDGFPFIGA 858
            FRS   RSY         Q K+    ++ NF K      ++ + G  + L+DDG    G 
Sbjct: 636  FRSLFYRSYMD-------QEKKVGMFNVENFEKPTRETCLRLRHGTYEKLEDDGLIAPGI 688

Query: 859  NLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNF 903
             +   DI+IGK                  +  D S  L+ TE G+V +V++++N DG  F
Sbjct: 689  RVTGDDIIIGKTIPLSQDSEELGQRTEHHTKRDASTPLRSTETGIVDRVLVTNNQDGMRF 748

Query: 904  SVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTP 963
              V +R  R P +GDKF+S HGQKG +G     E+ PFT+ GI PDI+INPHA PSR T 
Sbjct: 749  VKVRVRSTRIPQMGDKFASRHGQKGTVGMTYRTEDMPFTVNGITPDIIINPHAIPSRMTI 808

Query: 964  GQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRT 1023
            G L+E  LGK ++ L     +G +  ATPF   +V+AI++ L   G+   G E +++G T
Sbjct: 809  GHLVECLLGK-VSTL-----TGDEGDATPFTDVTVEAISKLLRENGYQSRGFEVMFNGHT 862

Query: 1024 GEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKF 1076
            G+ +++ IF+GPT+YQRL HM +DK+  R  GPV  LTRQPV  R R GG++F
Sbjct: 863  GKKLQAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 915


>gi|320101550|ref|YP_004177142.1| DNA-directed RNA polymerase subunit B' ;DNA-directed RNA polymerase
            subunit B' [Desulfurococcus mucosus DSM 2162]
 gi|319753902|gb|ADV65660.1| DNA-directed RNA polymerase, subunit B' ;DNA-directed RNA polymerase,
            subunit B' [Desulfurococcus mucosus DSM 2162]
          Length = 1165

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 377/1229 (30%), Positives = 587/1229 (47%), Gaps = 183/1229 (14%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
            +F E GLV   ++SY  F+K  L    + F E  +                  +   +  
Sbjct: 20   YFEEKGLVRQHLDSYERFLKELLPSILEEFREIRIA-------------EKTRIVIEKYR 66

Query: 93   LDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYI 152
            +D+P + +  G +E    P   RL+N+TY++ + V V+ +         D+    REQ +
Sbjct: 67   VDEPKWTSIEGIEESKS-PMECRLRNLTYATPVYVTVRIE---------DESGYTREQEL 116

Query: 153  QKEVLSDETTNIIIGRIPVMVKSD------LCWMKGVEKGDCDFDHGGYFIIKGAEKVFV 206
            +   L D         +PVM+KS       L   + V  G+   D GGYFII G+EKV V
Sbjct: 117  K---LMD---------LPVMLKSSIDPLSKLTPEELVAMGEDPRDPGGYFIINGSEKVIV 164

Query: 207  AQEQICLKRLWV-------SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            AQE +    + V       S +    V   +  +R++L++        E  K G  V   
Sbjct: 165  AQEDLASNNIIVDAMPEGSSVTHVAKVTSVARGRRSQLVI--------ERRKDG--VFYA 214

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
             F   + P  +L  ALG++S+ EI+       E   + N L  SI        +      
Sbjct: 215  SFQGHKFPAVMLMVALGLASEAEILYATSLKPE---VHNHLLPSIIQIQEVLPKLEIPEG 271

Query: 320  A---------LKYVDKLIK------GTTFPPGESTEE-------CMNTYLFPSLHGTK-- 355
            A          +Y  ++++       + F  G+  EE        ++  L P + GT   
Sbjct: 272  ASEEEVERLKEEYRRRVVEEALDFIASKFIIGKPREERILRAQRLLDERLLPHI-GTDPS 330

Query: 356  -----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKR 410
                 +KA F+G M+  +++ Y G R  D++D +RNKRL+LAG++L   L+  I    + 
Sbjct: 331  PETRLRKAVFIGQMISRIIELYLGYRSPDDKDHYRNKRLKLAGDMLATLLRAAIMGFSRE 390

Query: 411  MAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRA 470
            + + +++ L   R V  ++     SI+T+ L  A +TG W  P  RT    G+   L R 
Sbjct: 391  IKEGVEKQLAKTRKVD-LKMVFKPSIITDRLLHAMATGNW--PGGRT----GVSQLLDRT 443

Query: 471  NPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVS 530
            N L TL  LRR    +       +AR  H + WG++C   TP+G N GLVKNL +   VS
Sbjct: 444  NMLSTLSHLRRVVSPLARGQPHFEARELHGTQWGRMCPFETPEGANIGLVKNLALMTNVS 503

Query: 531  TSILEPIFEQLF-----------NSG-------MEKLADDASYSL------GGKFKVFVD 566
              + +   E L            N+G       ++ + +D S ++       G  KVF++
Sbjct: 504  VGVDDKEIELLLYRIGVVPLVSINTGDKSYKGILDIIREDVSAAVELSEKYSGWSKVFLN 563

Query: 567  GDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKR--DELQSEVRIFMDAGRILRPLLVVE 624
            G  +G  ++       +R  RR+ ++ ++V +         EV +  D GRI RPL+VVE
Sbjct: 564  GKLVGYHRNGEELARAIRELRRKGKISSEVNVAHINSGYVDEVVVNTDPGRIRRPLIVVE 623

Query: 625  NMGK-------IKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKP 677
            N GK       +K LE     F+ L+  GIIE +  +EEE+   A     +  +      
Sbjct: 624  N-GKPKLTREHVKMLEEGRLGFEDLVKQGIIEYLDPDEEENAYIALEPGSVGAE------ 676

Query: 678  IKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSH 737
               TH E+ +  +LG++  IIP+  H+ + R +YQS   + Q++G    N   R+DT  H
Sbjct: 677  --HTHMEIWIPAILGITASIIPYPEHNQSPRNMYQS-AMAKQSLGLYAANFQRRMDTRGH 733

Query: 738  QLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNR 797
             L YPQ+PL +T   D +G     +N    RP    GQN +VAV  + GYN ED+L++N+
Sbjct: 734  FLHYPQKPLVQTRAMDVIG-----YNE---RP---AGQNMVVAVLTYTGYNMEDALILNK 782

Query: 798  ASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIG 857
            +S++RG+ RS   R Y          ++   +    N    + +    + L++DG     
Sbjct: 783  SSVDRGLARSTFFRLYTTVEYKYPGGIQDEITIPSTNIRGYRGQKA-YEKLEEDGIVAPE 841

Query: 858  ANLQSGDIVIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKN 902
              +  GD++IGK +                +  D S+ ++H E+G+V  V+++ + +G  
Sbjct: 842  TPVTGGDVLIGKISPPRFLSAQEYEVGSTLTRQDTSVVMRHEEKGVVDTVLITMDSEGNK 901

Query: 903  FSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQT 962
               V +R +R P LGDKF+S HGQKGV+G L  Q + PFT +G+VPD++INPHAFPSR T
Sbjct: 902  LIKVRVRDLRIPELGDKFASRHGQKGVVGLLVPQYDMPFTEEGVVPDLIINPHAFPSRMT 961

Query: 963  PGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGR 1022
              QL+E+  GK  A  G+         ATPF    ++ +   + R G+S  G E +YDGR
Sbjct: 962  VAQLMESIAGKAAALEGRTFD------ATPFYKTPIEELQVIIKRHGYSPTGEEAMYDGR 1015

Query: 1023 TGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1082
            TGE++ + +FIG  +YQ+L HM  DK+  R  GPV  LTRQP   R R GG+++GEME D
Sbjct: 1016 TGELLDAPVFIGVVYYQKLHHMVSDKMHARARGPVQILTRQPTEGRSRAGGLRWGEMEVD 1075

Query: 1083 CLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPY-CRICDSGD 1141
            CL+ HG+A  L E +   SDS  +++C  C +        +G   + +G Y C +     
Sbjct: 1076 CLVGHGSAMLLKEAMTDRSDSTIIYVCELCGS--------MGWYDRNKGKYMCPVHKERG 1127

Query: 1142 DIVKANVPYGAKLLCQELFSMGITLKFDT 1170
             +    V Y  KLL QEL S+GI  +  T
Sbjct: 1128 VLKPVEVSYAFKLLLQELMSLGIRPRLIT 1156


>gi|242808107|ref|XP_002485094.1| DNA-directed RNA polymerase III, beta subunit, putative [Talaromyces
            stipitatus ATCC 10500]
 gi|218715719|gb|EED15141.1| DNA-directed RNA polymerase III, beta subunit, putative [Talaromyces
            stipitatus ATCC 10500]
          Length = 1212

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 386/1210 (31%), Positives = 576/1210 (47%), Gaps = 169/1210 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN FI+  L+K        IVE         +  +    ++F  +
Sbjct: 97   AFLKVKGLVKQHIDSYNYFIEVQLKK--------IVEASSTIYSDADSHF---FLKFTDI 145

Query: 92   TLDKPSFF---AGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGR 148
             +  P        +   +  + P   RL++MTY++ +     F  +T KR        G+
Sbjct: 146  YVGSPRRSDEPKDSVESDSTVTPNECRLRDMTYAAPI-----FVDFTYKR--------GK 192

Query: 149  EQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGAE 202
            +   Q+ V         IGR+P+M++S  C +   +  +      C  D GGYFI+ G E
Sbjct: 193  DNVTQRRVP--------IGRMPIMLRSSKCVLSNKKPNELHLLNECPLDPGGYFIVNGTE 244

Query: 203  KVFVAQEQICLKRLWVSNS-----MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVL 257
            KV + QEQ+   R+ V        +  +V   S  ++++  + L         K     L
Sbjct: 245  KVILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSKSYIIL---------KKDRLYL 295

Query: 258  SVYFLSTEIPIWILFFALGVSSDKEIVNLI----DFTCEDCSILNILFASIHDADNKCDE 313
                LS ++P+ I+  A+GV SDKE++ L+    D   ED       FA   +   K + 
Sbjct: 296  RHNVLSEDVPLVIVLKAMGVHSDKEMMLLVAGIDDVYQED-------FAINFEEAIKQNV 348

Query: 314  FRKGRNALKYVDKLIKGTTFPPG-------ESTEECMNTYLFPSLHGT----KQKARFLG 362
            F + + AL ++   IK      G       E   E +++ +   +  T    + KA ++ 
Sbjct: 349  FTQ-QQALDWIGSKIKINRGKVGGYKKTHIEEAIEAISSVVISHVEVTNMDFRPKAIYVA 407

Query: 363  YMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKAL--- 415
             M + +L A       D+RD   NKRLELAG+LL    E   K      +  + K L   
Sbjct: 408  NMARRVLMAKHDPSMVDDRDYVGNKRLELAGQLLALLFEDLFKKFCFDIKMNITKVLGKR 467

Query: 416  QRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQT 475
            +R+++   +V      L  + +T+G++RA STG WS    R ER +G+   L R + +  
Sbjct: 468  RREIFDAMSV----VALHGNHITHGMNRAISTGNWSLKRFRMER-AGVTHVLSRLSYIAA 522

Query: 476  LVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE 535
            L  + R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL +   ++T+  E
Sbjct: 523  LGMMTRISSQFEKTRKVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHITTNDEE 582

Query: 536  -PIFEQLFNSGME---KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKE 591
             P+ + +F  G E    L+    Y LG  + + ++G  I + +    F++  RR RR   
Sbjct: 583  GPVSKLVFMLGAEDITTLSGKEIYGLGA-YIISMNGTPIAMTRRPKHFLNSFRRLRRMGR 641

Query: 592  LPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLD 644
            +   V I  +  Q  V I  D GRI RPL+VVEN GK       +  L   +  F   L 
Sbjct: 642  VSEFVSIYINHHQRAVHIATDDGRICRPLIVVEN-GKPLVNSRHLGKLRDGSMQFDDFLA 700

Query: 645  HGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHD 704
             G++E +   EE D      I    KD+ D      TH E++   +LG   G+IP+ +H+
Sbjct: 701  QGLVEYLDVNEENDS----NIAIYEKDVVDIT----THLEIEPFTILGAVAGLIPYPHHN 752

Query: 705  HARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNH 764
             + R  YQ      QAIG   +N  +R+D+L + + YPQ+P+ +T   + +    Y H  
Sbjct: 753  QSPRNTYQCAM-GKQAIGAIASNQFLRIDSLLYLMVYPQKPMVKTRTIELIK---YDH-- 806

Query: 765  ILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQV 824
                  L  GQNA VAV  + GY+ ED+LV+N+ S++RG  R +  R Y A + +     
Sbjct: 807  ------LPAGQNATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVANLKSYP--- 857

Query: 825  KRRSSDDMV---NFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA------ 875
                S+D +     G+    I +   LD DG   +G  +  G + I K   + A      
Sbjct: 858  --NGSEDRLRGPEIGENNVPIAKHALLDSDGLAAVGEVVSQGQVYINKEVPAAAFSAGIT 915

Query: 876  --------DHS---IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMH 924
                    D++   +  K  +   + KV++S  +       V  RQ R P +GDKFSS H
Sbjct: 916  GSDAGRPTDYNPAPMTYKLPDPSYIDKVMVSVTEGESKIYKVQTRQTRRPEVGDKFSSRH 975

Query: 925  GQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICS 984
            GQKGV+G +  Q + PFT QGIVPDI++NPH FPSR T G+LLE   GK       G+ S
Sbjct: 976  GQKGVVGIIAEQADMPFTDQGIVPDIIMNPHGFPSRMTVGKLLELVAGKA------GVLS 1029

Query: 985  GLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHM 1044
            G   Y T F    V+ ++  L   GFS  G + L  G TG+ +   +F GP +YQ+L HM
Sbjct: 1030 GQHGYGTAFGGSPVEEMSAILVDKGFSYGGKDYLTSGITGDPLPFYVFTGPIYYQKLKHM 1089

Query: 1045 SEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSY 1104
             +DK+  R+TGP   LTRQP   R R GG++ GEMERDCLIA+G +  L ERL   SD +
Sbjct: 1090 VQDKMHSRSTGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMLSSDKH 1149

Query: 1105 QMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
            ++ IC KC             G      +C+ C S   +VK  +PY AKLL QEL SM +
Sbjct: 1150 EVDICEKC-------------GFMGYQNWCQRCRSSRGVVKMTIPYAAKLLIQELLSMNV 1196

Query: 1165 T--LKFDTEF 1172
            T  LK + EF
Sbjct: 1197 TARLKLEDEF 1206


>gi|189230055|ref|NP_001121521.1| polymerase (RNA) III (DNA directed) polypeptide B [Xenopus (Silurana)
            tropicalis]
 gi|183986364|gb|AAI66377.1| LOC100158643 protein [Xenopus (Silurana) tropicalis]
          Length = 1134

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 370/1186 (31%), Positives = 561/1186 (47%), Gaps = 147/1186 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYASMRFG 89
            +F    GLV   I+S+N FI + ++K        I++     +   +  W  +Y ++  G
Sbjct: 32   AFLKVKGLVKQHIDSFNYFINDEIKK--------IMKANEKVTSDADPMWYLKYLNIYVG 83

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
               +++ SF          + P   RL++MTYS+ + V +++              T   
Sbjct: 84   LPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEY--------------TRGS 123

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
            Q I +  L        IGR+P+M++S  C + G       +  +C  D GGYFI+KG EK
Sbjct: 124  QRIIRNALP-------IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEK 176

Query: 204  VFVAQEQICLKRLWVS----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            V + QEQ+   R+ V      ++G +V   +  K++R    LV       +K G   L  
Sbjct: 177  VILIQEQLSKNRIIVEADRKGTVGASVTSSTHEKKSR--TNLV-------VKQGRFYLKH 227

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
              L+ +IPI I+F A+GV SD+EIV +I    E+  I    FA   +   K   F +   
Sbjct: 228  NTLTEDIPIAIIFKAMGVESDQEIVQMIG--TEEHVIAA--FAPSLEECQKAQIFTQ-MQ 282

Query: 320  ALKYVDKLIK-----GTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSG 374
            ALK++   ++     G++ P     +E     L  S   T    +   +  KC+  A   
Sbjct: 283  ALKFIGNKVRRQRMWGSSGPKKSKIDEARE--LLASTILTHVPVKEFHFRTKCIYIAVMV 340

Query: 375  RR--------KCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR 426
            RR        K D+RD + NKRLELAG+LL    +         M K   + +   R  +
Sbjct: 341  RRVILAQGANKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQ 400

Query: 427  -PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQ 485
              +  ++    +TNG+  A S+G WS    + +R  G+   L R + +  L  + R   Q
Sbjct: 401  FDVVKHMRQDQITNGMVNAISSGNWSLKRFKMDR-QGVTQVLSRLSYIAALGMMTRISSQ 459

Query: 486  VQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNS 544
             + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + + PI +   N 
Sbjct: 460  FEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAANL 519

Query: 545  GMEKL----ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKR 600
            G+E +     ++ SY+    F VF++G+ +GV +D    V+  R  RR   +   V I  
Sbjct: 520  GVEDVNLLCGEELSYA--NVFLVFLNGNILGVIRDHQKLVNTFRLMRRAGYINEFVSIST 577

Query: 601  DELQSEVRIFMDAGRILRPLLVVENM------GKIKSLEGKNYTFQALLDHGIIELVGTE 654
            +     V I  D GR+ RP ++V+N         I+ L     +F+  L   ++E +   
Sbjct: 578  NISDRCVYISSDGGRLCRPYIIVKNQRSAVTNKHIQELSQGYRSFEDFLHESLVEYLDVN 637

Query: 655  EEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQ 714
            EE DC  A     + K          TH E++   LLG+  G+IP+ +H+ + R  YQ  
Sbjct: 638  EENDCNVALYEHTITKHT--------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC- 688

Query: 715  KHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNG 774
                QA+G    N   R+DTL + L YPQRP+ +T   +           ++   +L  G
Sbjct: 689  AMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIE-----------LIEFEKLPAG 737

Query: 775  QNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVN 834
            QNA VAV  + GY+ ED+LV+N+ASL+RG  R    ++ K  +     Q   +    M++
Sbjct: 738  QNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYSNQTFDKVMGPMLD 797

Query: 835  FGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA----------------DHS 878
                + +I R + LD DG    G  +++  +++ KY  +                  D  
Sbjct: 798  -ANTRKQIWRHEILDADGICSPGEKVENKQVLVNKYMPTVTQTPLEGSSVPQQPQYKDVP 856

Query: 879  IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQEN 938
            I  K      ++KV++SSN +      + LRQ R P +GDKFSS HGQKGV G +  QE+
Sbjct: 857  ITYKGPTDSYIEKVMISSNAEDAFLIKILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQED 916

Query: 939  FPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSV 998
             PF   GI PDI++NPH +PSR T G+L+E   GK       G+  G   Y T F    V
Sbjct: 917  MPFCETGICPDIIMNPHGYPSRMTVGKLIELLAGKA------GVLDGRFHYGTAFGGSKV 970

Query: 999  DAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVH 1058
              + E L R G++  G + +  G TGE + + I+ GP +YQ+L HM  DK+  R  GP  
Sbjct: 971  KDVCEDLIRYGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRA 1030

Query: 1059 PLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANV 1118
             LTRQP   R R GG++ GEMERDCLI +GA+  L ERL   SD++++ +C KC      
Sbjct: 1031 VLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGKC------ 1084

Query: 1119 IQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
                   G      +C  C S   +    +PY  KLL QEL SM I
Sbjct: 1085 -------GLLGYSGWCHFCKSSCHVSSLRIPYACKLLFQELQSMNI 1123


>gi|91082339|ref|XP_966549.1| PREDICTED: similar to RNA polymerase III 128kD subunit CG8344-PA
            [Tribolium castaneum]
 gi|270007487|gb|EFA03935.1| hypothetical protein TcasGA2_TC014075 [Tribolium castaneum]
          Length = 1122

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 364/1205 (30%), Positives = 569/1205 (47%), Gaps = 136/1205 (11%)

Query: 8    FTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIV 67
            F DP  L    +E  + +  K   +F    GLV   I+S+N FI   ++K  ++  + + 
Sbjct: 3    FDDPALLKKPIKEIEEKW--KLVPAFLKVKGLVKQHIDSFNYFINVDIKKIVEANNKLVC 60

Query: 68   EPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKV 127
            +   DP            +++  V + +P    G    +    P   RL++MTYS+ + V
Sbjct: 61   DA--DP---------LFYVKYTNVYVGRPDVDEGFNISKPTT-PHECRLRDMTYSAPISV 108

Query: 128  KVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG----- 182
             +++   TQ RV+    K G                ++IGR+P+M++S  C +       
Sbjct: 109  DIEYTRGTQ-RVS----KAG----------------LMIGRMPIMLRSSNCVLTNKSEYE 147

Query: 183  -VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNS-MGWTVAYKSENKRNRLIVR 240
              +  +C  D GGYF++KG EKV + QEQ+   R+ V  S  G   A  S     +    
Sbjct: 148  LAKMNECPLDPGGYFVVKGQEKVILIQEQLSKNRMIVEESKFGVQCAVTSSTHEKKSRTN 207

Query: 241  LVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDF--------TCE 292
            +V        K  +  L    L+  +P+ I+F AL V+SDKEI  LI          T E
Sbjct: 208  VV-------CKANKYYLGHNSLTDLVPVSIIFKALDVTSDKEICELIGVEDISKLTPTLE 260

Query: 293  DCSILNIL--FASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPS 350
            +C  L I     ++    +K         A +YV    K  T  P +   + + T +   
Sbjct: 261  ECHTLKIYTQLGALKHIGSKL-------VAKRYVTSASKMKT--PVDEARDVLATTVLAH 311

Query: 351  L----HGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAH 406
            +    +  + KA +LG MVK +++A S ++  D++D + NKRLELAG LL    +     
Sbjct: 312  VPVENYNFRMKAIYLGVMVKRVIEAQSDKKFMDDKDYYGNKRLELAGSLLSLMFEDVFKR 371

Query: 407  ARKRMAKALQRDLYGDRTVR-PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVA 465
                +    ++ +   R  +  +  Y+ + ++TN L  A STG W+    R ER+ G+  
Sbjct: 372  FNWELKSIAEKTIPKIRATQFDVVKYMRSDLITNCLVYAISTGNWTIKRFRMERL-GVTQ 430

Query: 466  NLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV 525
             L R + +  L  + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +
Sbjct: 431  VLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLAL 490

Query: 526  TGLVSTSILE-PIFEQLFNSGMEKLADDASYSLGG--KFKVFVDGDWIGVCKDSLSFVSE 582
               ++T + E P+     N+G+  +   +  S+     F VF++G+ +G  ++    +  
Sbjct: 491  MTHITTDVDEYPLIRLANNAGVVDINMSSGMSIHSPETFFVFLNGNILGTIRNYKKLIHT 550

Query: 583  LRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE------NMGKIKSLEGKN 636
             R  RR   +   V I  + L   + I  D GR+ RP ++VE          I  LE   
Sbjct: 551  FRMLRRSGLISGYVSIYPNFLHRCIYISSDGGRLCRPYIIVERGRPLVTQNHIIELEKGI 610

Query: 637  YTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCG 696
             +F+  L  G+IE +   EE D   A       KDI D      TH E+    LLG+  G
Sbjct: 611  RSFEDFLHDGLIEFLDVNEENDSFIAC----YEKDITDLT----THLEIATFTLLGVCAG 662

Query: 697  IIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLG 756
            ++P+ +H+ + R  YQ      QA+G    N   R+DTL + L YPQ P+ +T   +   
Sbjct: 663  LVPYPHHNQSPRNTYQCA-MGKQAMGTIGYNQKNRMDTLLYSLVYPQAPMVKTKSIE--- 718

Query: 757  KPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAE 816
                    +    +L  GQNA +AV  + GY+ ED+L++N+AS++RG  R    ++ K  
Sbjct: 719  --------LTNFDKLPAGQNATIAVMSYSGYDIEDALIINKASIDRGFGRCLVYKNSKCV 770

Query: 817  VDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA- 875
            +     Q   R    +++     + + +   LD DG    G ++ +  +++ K   + + 
Sbjct: 771  MKRYANQTFDRIQGPLID-TTTNAPMWKHAVLDMDGIVAPGESVDNKQVLVNKSVPTVSA 829

Query: 876  ------------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSM 923
                        D  I  ++ E   ++KV++S+N++      + LRQ R P +GDKFSS 
Sbjct: 830  VPGSQTTSVEYKDTPICYRNNEPSYIEKVLVSTNEEDTTIIKILLRQTRRPEIGDKFSSR 889

Query: 924  HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGIC 983
            HGQKGV+G +  QE+ PF   GI PDI++NPH +PSR T G+L+E   GK       G+ 
Sbjct: 890  HGQKGVVGLVVEQEDMPFNEYGICPDIIMNPHGYPSRMTVGKLIELLAGKA------GLV 943

Query: 984  SGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIH 1043
             G   Y T F    V+ + E+L + GF+  G +  Y G TGE + + I+ GP +YQ+L H
Sbjct: 944  EGKFHYGTAFGGSKVNDVCEELAKHGFNYQGKDFFYSGITGEPLEAYIYSGPVYYQKLKH 1003

Query: 1044 MSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDS 1103
            M +DK+  R  GP   LTRQP   R R GG++ GEMERDCLI +GA+  L ERL   SD 
Sbjct: 1004 MVQDKIHARGRGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMMLIERLMVSSDQ 1063

Query: 1104 YQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMG 1163
             ++ +C  C             GR     +C  C S  ++    +PY  KLL  EL +M 
Sbjct: 1064 CEVDVCNLC-------------GRLGYCGWCNSCKSSREVSSITMPYACKLLLTELQAMN 1110

Query: 1164 ITLKF 1168
            IT + 
Sbjct: 1111 ITARL 1115


>gi|428184687|gb|EKX53541.1| hypothetical protein GUITHDRAFT_64211 [Guillardia theta CCMP2712]
          Length = 1155

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 374/1193 (31%), Positives = 574/1193 (48%), Gaps = 138/1193 (11%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETI--VEPGYDPSKKGEGEWRYASMRFG 89
            +F    GL   QI+S+N F+   ++    +  +     +PG+           Y  +R G
Sbjct: 46   AFLKVRGLTKQQIDSFNYFLNVDMKLILKANNKITCDADPGW--------YLEYKDIRVG 97

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
               +D  +F     G    + P+  RL++MTY +++ V ++   YT+ +        G++
Sbjct: 98   PPNVD--AFCDRPAGVNEGITPQQCRLRDMTYYAQILVDIE---YTRDQAGGG----GKK 148

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEK 203
            + ++K+       N  IGR+P+M++   C + G  +      G+C  D GGYF+++G EK
Sbjct: 149  ERVRKD-------NHPIGRMPIMLRCSHCVLNGKSETEMSAMGECPLDPGGYFVVRGTEK 201

Query: 204  VFVAQEQICLKRLWVS-NSMGW-TVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYF 261
            V + QEQ+   R+ +  ++ G  + +  S   + +    +        IK G   L    
Sbjct: 202  VILIQEQLSKNRIIIERDAKGQPSASVTSSTAKTKTKTNIT-------IKNGRFQLKHNS 254

Query: 262  LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNAL 321
             +  IPI I   A+G++SD+EI+ L+     +    + L AS+        E R    AL
Sbjct: 255  FTDSIPIVIALKAMGLTSDQEIIQLVG---SEALFADDLAASLEVC---ATEIRP--QAL 306

Query: 322  KYVDKLIKGTTFP------PGESTEECMNTYLFPSLHGTK----QKARFLGYMVKCLLQA 371
             Y+   IK T F         E   E + T +   +   K     KA ++  M++ ++QA
Sbjct: 307  DYIGNKIKPTKFARRQQSTKAEEAREKLATVVVSHVPVVKYDFRAKAIYICLMLRRIIQA 366

Query: 372  YSGRRKCDNRDDFRNKRLELAGE----LLERELKVHIAHARKRMAKALQRDLYGDRTVRP 427
                   D++D + NKRLELAG+    L E   K   +  +K   K L++      T   
Sbjct: 367  MHDETVMDDKDYYGNKRLELAGQTMSLLFEDVFKSFNSDVQKIAQKQLEKP--SRTTTFD 424

Query: 428  IEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQ 487
            +  YL  + +T+ L  A STG W+      ER  G+   L R + +  L  + R + Q +
Sbjct: 425  VLKYLPPTKITSALVNAISTGNWNLRRFGMER-QGVTQVLSRLSYIAALGMITRVQSQFE 483

Query: 488  YTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGM 546
             T KV   R   PS WG +C   TP+GE+CGLVKNL +   V+T   E PI    ++ G+
Sbjct: 484  KTRKVSGPRALQPSQWGMLCPADTPEGESCGLVKNLSLMTHVTTDDDELPIELLCYDLGV 543

Query: 547  EKLA--DDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQ 604
            E L        +LG  + VF++G  +G+ +   +FV  LR  RRR  L   V I  +  Q
Sbjct: 544  EDLGILSGEEATLGNVYLVFLNGLLLGLHRAPKNFVQLLRAMRRRGRLGEFVSIYSNARQ 603

Query: 605  SEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGIIELVGTEEEE 657
              V I  D GR+ RPL++V+N G+       IK +     TF   L  G+IE +   EE 
Sbjct: 604  RTVHISCDGGRVCRPLIIVKN-GRSFVTDQHIKEVLSNCRTFSDFLKEGLIEYLDVNEEN 662

Query: 658  DCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHS 717
            D   A          E     K TH E+D   ++G   G+IP  +H+ + R  YQ     
Sbjct: 663  DSLIAL--------YEHGIGPKTTHLEIDPLTVMGACAGLIPNPHHNQSPRNTYQC-AMG 713

Query: 718  SQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNA 777
             QAIG    N   R+DTL + L YPQRPL +T   +      + + H +P      GQNA
Sbjct: 714  KQAIGAIAYNQLQRIDTLLYLLVYPQRPLAQTKTIE------FINFHRIP-----AGQNA 762

Query: 778  IVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF-- 835
             VAV  + GY+ ED++V+NR++++RG  R+  ++          ++    +++D + +  
Sbjct: 763  TVAVMSYTGYDIEDAVVLNRSAVDRGFGRTIVLKK-----STTSLKRYSNAAEDRITYPQ 817

Query: 836  -GKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA----------------DSGADHS 878
             G  +    R  +LD DG   +G+ +  G I++ K                  D+     
Sbjct: 818  SGGNERLALRTANLDRDGIVGVGSKVSQGQILVNKMVPKDISTVINNPDELREDAFKSAP 877

Query: 879  IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQEN 938
            +  K    G V +V+L+SN D      V +R  R P LGDKFSS HGQKGV G +  QE+
Sbjct: 878  LVYKDKADGYVDQVLLTSNHDEHFLVKVLMRTTRRPELGDKFSSRHGQKGVTGIIIPQED 937

Query: 939  FPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSV 998
             PFT +G+ PD+++NPH FPSR T G+LLE   GK  AAL  G  +    +A+     SV
Sbjct: 938  MPFTEEGLCPDLIMNPHGFPSRMTVGKLLEMLGGK--AALMNGKFADATAFAS--TASSV 993

Query: 999  DAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVH 1058
             AI++ L   G+   G E L  G TGE V + IF GP +YQ+L HM +DK+  R+ GP  
Sbjct: 994  QAISDTLVLHGYHFGGKELLTSGITGEPVPAYIFFGPIYYQKLKHMVQDKMHARHKGPRT 1053

Query: 1059 PLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANV 1118
             LTRQP   R + GG++ GEMERDCL+++G++A L ERL   SD +Q H+C+KC  +   
Sbjct: 1054 VLTRQPTEGRSKDGGLRLGEMERDCLVSYGSSALLLERLMISSDEFQCHVCKKCGLIG-- 1111

Query: 1119 IQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                          +C+ C +   +    +PY  KL+  EL SM I  +   E
Sbjct: 1112 -----------YPGWCQNCKTNLHMSMIQMPYACKLVFHELQSMNIVPRLRLE 1153


>gi|383862931|ref|XP_003706936.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Megachile
            rotundata]
          Length = 1132

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 362/1196 (30%), Positives = 568/1196 (47%), Gaps = 159/1196 (13%)

Query: 28   KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMR 87
            K   +F    GLV   I+S+N FI   ++K   +  + + +   DP            ++
Sbjct: 28   KLVPAFLKGKGLVKQHIDSFNYFINTEIKKIVKANEKVLSDA--DP---------LFYVK 76

Query: 88   FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
            +  V +  P    G         P   RL+++ YS+ + V ++             +  G
Sbjct: 77   YLNVHVGSPDVEEG-FNVTRPTTPHECRLRDLNYSAPITVDIE-------------YIRG 122

Query: 148  REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGA 201
             +  I+         N++IGR+P+M++S  C + G       +  +C  D GGYF+I G 
Sbjct: 123  HQPIIR--------NNLLIGRMPIMLRSSNCVLTGKSHFELAKMNECPHDPGGYFVINGQ 174

Query: 202  EKVFVAQEQICLKRLWV-SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDI-KGGEKVLSV 259
            EKV + QEQ+   R+ +  ++ G  VA  + +   R        +K   I KGG   +  
Sbjct: 175  EKVILIQEQMLRNRIILEEDNKGCIVASCNSSTHER-------KTKTNIIGKGGRYYMRH 227

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLI----DF------TCEDCSILNILFASIHDADN 309
                 +IP+ I+F A+G+ SD+EI+ LI    +F      + E+C +LN+       A N
Sbjct: 228  NIFQDDIPVTIIFKAMGIVSDQEIMQLIGTEEEFMKKFAPSLEECHVLNVF------AQN 281

Query: 310  KCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSL----HGTKQKARFLGYMV 365
            +   F   +   K    +    T    +  ++ + T +   +       K KA ++  M+
Sbjct: 282  QALRFLNNKRKQKRFSVIKSSIT----DEMKDILATNVLSHVPVVDFNFKMKATYIALMI 337

Query: 366  KCLLQAYSGRRKCDNRDDFRNKRLELAGELLER-----------ELKVHIAHARKRMAKA 414
            + +++A S  +  D+RD + NKRLELAG LL             ELK  IA       KA
Sbjct: 338  RKVMKAQSDGKLVDDRDYYGNKRLELAGSLLSLMFEDLFKRFNWELK-QIADKNIPKIKA 396

Query: 415  LQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQ 474
             Q D         I  ++    +TNGL+ A S+G W+    + ER  G+   L R + + 
Sbjct: 397  AQFD---------IVKHMRQDQITNGLAFAISSGNWTIKRFKMER-HGVTQVLSRLSYIS 446

Query: 475  TLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI- 533
             L  + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T I 
Sbjct: 447  ALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEGCGLVKNLALMTHITTEID 506

Query: 534  LEPIFEQLFNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVSELRRKRRRKE 591
             EPI    FN G+E +       +  +  + VF++G+ +G+ K+    V+  R  RR+  
Sbjct: 507  EEPIIRLAFNLGVENVNILGGEEINNRKVYMVFLNGNILGIVKNYQRLVNVFRLLRRKGL 566

Query: 592  LPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE------NMGKIKSLEGKNYTFQALLDH 645
            +   V I        ++I  D GR+ RP ++V+          IK LE     F+  L+ 
Sbjct: 567  INGFVSIYTQHQHRCIQISSDGGRLCRPYIIVQKGEPLIQAEHIKLLEHGVRCFEDFLND 626

Query: 646  GIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDH 705
            G+IE +   EE D   A+   ++ +        K TH E++   LLG+  G++P+ +H+ 
Sbjct: 627  GLIEYLDVNEENDSSIAFNESHINE--------KTTHLEIEPFTLLGVCAGLVPYPHHNQ 678

Query: 706  ARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHI 765
            + R  YQ      QA+G    N   R+DTL + L YPQ P+ ++   +           +
Sbjct: 679  SPRNTYQCAM-GKQAMGTIGYNQRNRIDTLMYNLVYPQAPMVKSRTIE-----------L 726

Query: 766  LPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVK 825
            +   +L  GQNAIVAV  + GY+ ED+L++N+AS++RG  R    R+ K  +     Q  
Sbjct: 727  INFDKLPAGQNAIVAVMSYSGYDIEDALILNKASIDRGYGRCLIYRNAKCTLKRYANQTY 786

Query: 826  RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA--------DSG--- 874
             R    +++    +  + + D +D DG    G  +++  +++ K +        +SG   
Sbjct: 787  DRIMGPLID-SNTKKSVWKHDIIDSDGIAAPGEMVENRKVMVNKSSPSVNIGPVNSGNVQ 845

Query: 875  -----ADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGV 929
                  D  +  K      V+KV++SSN +      + LRQ R P +GDKFSS HGQKGV
Sbjct: 846  TQTEYKDVPVVFKGPVPAYVEKVMISSNAEDAFLIKLLLRQTRRPEIGDKFSSRHGQKGV 905

Query: 930  LGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRY 989
             G +  QE+ PF   GI PD+++NPH FPSR T G+L+E   GK       G+  G   Y
Sbjct: 906  TGLIVEQEDMPFNDYGICPDMIMNPHGFPSRMTVGKLIELLAGKA------GVIKGEFHY 959

Query: 990  ATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKV 1049
             T F    V+ + E+L + G++  G +  Y G TGE +++ I+ GP +YQ+L HM +DK+
Sbjct: 960  GTAFGGSKVEDVCEELVKHGYNYLGKDFFYSGITGEPLQAYIYSGPVYYQKLKHMVQDKM 1019

Query: 1050 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHIC 1109
              R+ GP   LTRQP   R + GG++ GEMERDCLI +GA+  L ERL   SD++ + IC
Sbjct: 1020 HARSRGPRAVLTRQPTEGRAKEGGLRLGEMERDCLIGYGASMMLIERLMISSDAFDIDIC 1079

Query: 1110 RKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
             KC             G      +C  C S   +   ++PY  KLL QEL SM I 
Sbjct: 1080 NKC-------------GLMAYSGWCHSCRSSSCVSTISMPYACKLLFQELQSMNIV 1122


>gi|168006293|ref|XP_001755844.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693163|gb|EDQ79517.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1135

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 371/1194 (31%), Positives = 566/1194 (47%), Gaps = 151/1194 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            SF    GLV   I+S+N FI   ++K   + G   V    D         +Y  +  G+ 
Sbjct: 31   SFLKVRGLVKQHIDSFNYFINCEIKKIIHAQGNEKVTSDVD----ANFYLKYLDIFVGEP 86

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             +++   +         + P+  RL++MTYS+ + V V+   YT+               
Sbjct: 87   CVEQDYIY-------EPITPQQCRLRDMTYSAPISVDVE---YTRG-------------- 122

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
              KEV+     +I IGR+P+M++S  C + G       + G+C  D GGYF++KG EKV 
Sbjct: 123  --KEVVG----SINIGRMPIMLRSSRCILAGKNEAQLAKVGECPLDPGGYFVVKGTEKVI 176

Query: 206  VAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTE 265
            + QEQ+   R+ ++     +VA    +  +    +   + K E I      L       +
Sbjct: 177  LIQEQLSKNRIIITTDSSGSVAASVTSSTHERKSKTNMVVKHERI-----YLRHNTFGDD 231

Query: 266  IPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFR--KGRNALKY 323
            IPI ++  A+G+ SD+EIV ++    +   ILN        +  +C   +      AL+Y
Sbjct: 232  IPIVVVMRAMGMESDQEIVQMVGRDPKYAGILN-------PSLQECAALKIYTSHQALEY 284

Query: 324  VDKLIKGTTFPPGESTEECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRRKCD 379
            +   ++       +   + + T +   +       + K  +L  +++ +L+A   R   D
Sbjct: 285  LGSKVRV------DEARDILATVVLAHVPVHQFDFRAKCIYLAVIIRKMLEAMLNREAVD 338

Query: 380  NRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDRTVR-PIEYYLDA 434
            + D   NKRLELAG+LL    E   K   A  +K M   L +    +R+ +  I   +  
Sbjct: 339  DMDYVGNKRLELAGQLLSLLFEDLFKRMNAELKKSMDATLSK---ANRSTQFDIIKLIRP 395

Query: 435  SILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGD 494
              LTNGL  A S+G W+    + +R  G+   + R + +  L  + R   Q + T KV  
Sbjct: 396  DTLTNGLEHAISSGNWAVKRFKMDR-KGVTQVVSRLSFIAALGHMTRISSQFEKTRKVSG 454

Query: 495  ARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKLADDA 553
             R   PS WG +C   TP+GE CGLVKNL +   V+T   E P+ E     G+E L+  +
Sbjct: 455  PRALQPSQWGMLCPCDTPEGEACGLVKNLSLMTHVTTDEEEAPLIELCTTLGVEDLSLLS 514

Query: 554  SYSLGG--KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD-ELQSEVRIF 610
               L     + VF +G  +GV +    F   LR+ RR  ++   V +  + + Q  ++I 
Sbjct: 515  GEELHSPKTYLVFFNGTILGVHRRPNRFAEVLRKLRRAGKIGEFVSVHVNPKHQRNIQIA 574

Query: 611  MDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWG 664
             D GR+ RPL++ +          +K L+    TF   L  G++E +   EE +   A  
Sbjct: 575  SDGGRVCRPLVIADKGVSRVKEHHMKELKDGFRTFDDFLREGLVEYLDVNEENNSLIAL- 633

Query: 665  IKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFP 724
                    E       TH E++   +LG+  G+IP+ +H+ + R  YQ      QA+G  
Sbjct: 634  -------YEGDATPDTTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAM-GKQAMGNI 685

Query: 725  TTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVH 784
              N   R+DTL + L YPQRPL  T   + +G    G            GQNA VAV  +
Sbjct: 686  AYNQLQRMDTLLYLLVYPQRPLLSTKSIELVGYDKLG-----------AGQNATVAVMSY 734

Query: 785  LGYNQEDSLVMNRASLERGMFRSEHIRS-------YKAEVDNKEMQVKRRSSDDMVNFGK 837
             GY+ ED++VMN++SL+RG  R   I+        Y     ++ M  + +SS      G 
Sbjct: 735  SGYDIEDAIVMNKSSLDRGFGRCIVIKKSVVPMKKYANRTADRIMAPELQSSAK----GG 790

Query: 838  IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---------------DSG---ADHSI 879
            +Q  + R    D DG   +G  ++ GDI + K +               DS       + 
Sbjct: 791  VQV-VARQQLQDHDGIAAVGEMIRPGDIYVNKQSPIDTRNNVNNPMALPDSAYKRTPQTY 849

Query: 880  KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENF 939
            K    E  +V KV+L+SND+        +RQ R P +GDKFSS HGQKGV G +  QE+F
Sbjct: 850  KGAAGETAVVDKVLLTSNDENHFVVKCLIRQTRRPEVGDKFSSRHGQKGVCGTIVQQEDF 909

Query: 940  PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPS-- 997
            PF+ +GI PD+++NPH FPSR T G+++E   GK       G+ +G   Y + F  PS  
Sbjct: 910  PFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA------GLHNGKFHYGSAFGEPSGH 963

Query: 998  ---VDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNT 1054
               V  I+  L + GFS  G + +Y G TG  +++ IF+GP +YQ+L HM  DK+  R  
Sbjct: 964  ADKVSTISATLVKHGFSYSGKDFIYSGITGSPLQAYIFMGPIYYQKLKHMVLDKMHARAR 1023

Query: 1055 GPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKN 1114
            GP   LTRQP   R R GG++ GEMERDCLIA+GA+  + ERL   SD +Q+ +C KC  
Sbjct: 1024 GPRVVLTRQPTEGRSREGGLRLGEMERDCLIAYGASMMILERLMISSDQFQIQVCTKCGM 1083

Query: 1115 VANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
            +            K++   C  C SGD+I    +PY  KLL QEL SM I  + 
Sbjct: 1084 IGYY-------HHKLKICLCSTCKSGDNIATMKLPYACKLLFQELQSMNIVPRL 1130


>gi|212537851|ref|XP_002149081.1| DNA-directed RNA polymerase III, beta subunit, putative [Talaromyces
            marneffei ATCC 18224]
 gi|210068823|gb|EEA22914.1| DNA-directed RNA polymerase III, beta subunit, putative [Talaromyces
            marneffei ATCC 18224]
          Length = 1212

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 379/1209 (31%), Positives = 577/1209 (47%), Gaps = 167/1209 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN FI+  L+K        IVE         +  +    ++F  +
Sbjct: 97   AFLKVKGLVKQHIDSYNYFIEVQLKK--------IVEASSTIYSDADSAF---FLKFTDI 145

Query: 92   TLDKPSFF---AGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGR 148
             +  P        +   +  + P   RL++MTY++ +     F  +T KR        G+
Sbjct: 146  YVGSPRRSDEPKDSVESDSTVTPNECRLRDMTYAAPI-----FVDFTYKR--------GK 192

Query: 149  EQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGAE 202
            ++  Q+ V         IGR+P+M++S  C +   +  +      C  D GGYFI+ G E
Sbjct: 193  DKVTQRRVP--------IGRMPIMLRSSKCVLSNKKPNEMHLLNECPLDPGGYFIVNGTE 244

Query: 203  KVFVAQEQICLKRLWVSNS-----MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVL 257
            KV + QEQ+   R+ V        +  +V   S  ++++  + L         K     L
Sbjct: 245  KVILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSKSYIIL---------KKDRLYL 295

Query: 258  SVYFLSTEIPIWILFFALGVSSDKEIVNLI----DFTCEDCSILNILFASIHDADNKCDE 313
                LS ++P+ I+  A+GV SDKE++ L+    D   ED       FA   +   K + 
Sbjct: 296  KHNVLSEDVPLVIVLKAMGVHSDKEMMLLVAGVDDVYQED-------FAINFEEAIKQNV 348

Query: 314  FRKGRNALKYVDKLIKGTTFPPG-------ESTEECMNTYLFPSLHGT----KQKARFLG 362
            F + + AL ++   IK      G       E   E +++ +   +  T    + KA ++ 
Sbjct: 349  FTQ-QQALDWIGSKIKINRGKIGGYKKTHIEEAIEAISSVIISHVEVTDMDFRPKAIYVA 407

Query: 363  YMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLE-------RELKVHIAHARKRMAKAL 415
             M + +L A       D+RD   NKRLELAG+LL        ++ +  I     ++    
Sbjct: 408  NMARRVLMAKHDSDMVDDRDYVGNKRLELAGQLLALLFEDLFKKFQFDIKMNITKVLGKR 467

Query: 416  QRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQT 475
            +R+++   +V      L  + +T+G++RA STG WS    R ER +G+   L R + +  
Sbjct: 468  RREIFDAMSV----VTLHGNHITHGMNRAISTGNWSLKRFRMER-AGVTHVLSRLSYIAA 522

Query: 476  LVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE 535
            L  + R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL +   ++T+  E
Sbjct: 523  LGMMTRISSQFEKTRKVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHITTNDEE 582

Query: 536  -PIFEQLFNSGME---KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKE 591
             P+ + +F  G E    L+    Y LG  + + ++G  I + +    F++  RR RR   
Sbjct: 583  GPVSKLVFMLGAEDITTLSGKEIYGLGA-YIISMNGTPIALTRRPKYFLNAFRRLRRMGR 641

Query: 592  LPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDH 645
            +   V I  +  Q  V I  D GRI RPL+VVEN         ++ L   +  F   L  
Sbjct: 642  ISEFVSIYINHHQRAVHIATDDGRICRPLIVVENGKPLVKASHLEKLRDGSMQFDDFLAQ 701

Query: 646  GIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDH 705
            G++E +   EE D      I    KD+ D      TH E++   +LG   G+IP+ +H+ 
Sbjct: 702  GLVEYLDVNEENDS----NIAIYEKDVIDIT----THLEIEPFTILGAVAGLIPYPHHNQ 753

Query: 706  ARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHI 765
            + R  YQ      QAIG   +N  +R+D+L + + YPQ+P+ +T   +           +
Sbjct: 754  SPRNTYQC-AMGKQAIGAIASNQFLRIDSLLYLMVYPQKPMVKTRTIE-----------L 801

Query: 766  LPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVK 825
            +   +L  GQNA VAV  + GY+ ED+LV+N+ S++RG  R +  R Y A + +      
Sbjct: 802  IKYDQLPAGQNATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVANLKSYP---- 857

Query: 826  RRSSDDMVNFGKIQ---SKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA------- 875
               S+D +   ++    + I +   LD DG   +GA +  G + I K   + A       
Sbjct: 858  -NGSEDRLRGPELDEEGAPITKHALLDTDGLAAVGAVVSQGQVYINKEVPAAAFSAGITG 916

Query: 876  -------DHS---IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHG 925
                   D++   +  K  +   + KV++S  +       V  RQ R P +GDKFSS HG
Sbjct: 917  SDVGRPPDYNPAPMTYKLPDPSYIDKVMVSVTEGESKIYKVQTRQTRRPEVGDKFSSRHG 976

Query: 926  QKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSG 985
            QKGV+G +  Q + PF  QGIVPDI++NPH FPSR T G+LLE   GK       G+ SG
Sbjct: 977  QKGVVGIIAEQADMPFNDQGIVPDIIMNPHGFPSRMTVGKLLELVAGKA------GVLSG 1030

Query: 986  LKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMS 1045
               Y T F    V+ ++  L   GFS  G + L  G TGE +   +F+GP +YQ+L HM 
Sbjct: 1031 QHGYGTAFGGSPVEQMSAILVDKGFSYGGKDYLTSGITGEPLPFYVFMGPIYYQKLKHMV 1090

Query: 1046 EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQ 1105
            +DK+  R+TGP   LTRQP   R R GG++ GEMERDCLIA+G +  L ERL   SD ++
Sbjct: 1091 QDKMHSRSTGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMLSSDKHE 1150

Query: 1106 MHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
            + IC KC             G      +C+ C S   +VK  +PY AKLL QEL SM +T
Sbjct: 1151 VDICEKC-------------GFMGYQNWCQRCRSSRGVVKMTIPYAAKLLIQELLSMNVT 1197

Query: 1166 --LKFDTEF 1172
              LK   EF
Sbjct: 1198 ARLKLGDEF 1206


>gi|340720183|ref|XP_003398521.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Bombus
            terrestris]
          Length = 1128

 Score =  487 bits (1254), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 360/1196 (30%), Positives = 564/1196 (47%), Gaps = 159/1196 (13%)

Query: 28   KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMR 87
            K   +F    GLV   I+S+N FI   ++K   +  + + +   DP            ++
Sbjct: 24   KLVPAFLKGKGLVKQHIDSFNYFINVEIKKIIKANEKVLSDA--DP---------LFYVK 72

Query: 88   FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
            +  V +  P    G         P   RL+++ YS+ + V ++             +  G
Sbjct: 73   YLNVHVGLPDVEEG-FNVTRSTTPHECRLRDLNYSAPITVDIE-------------YIRG 118

Query: 148  REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGA 201
             +  I+         N++IGR+P+M++S  C + G       +  +C  D GGYFI+ G 
Sbjct: 119  HQPIIK--------NNLLIGRMPIMLRSSNCVLTGKSHFELSKMNECPHDPGGYFIVNGQ 170

Query: 202  EKVFVAQEQICLKRLWV-SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDI-KGGEKVLSV 259
            EKV + QEQ+   R+ +  +S G  VA  + +   R        +K   + KGG   +  
Sbjct: 171  EKVILIQEQMLRNRIILEEDSKGCIVASCNSSTHER-------KTKTNIVGKGGRYYMRH 223

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLI----DF------TCEDCSILNILFASIHDADN 309
                 +IP+ I+F A+G+ SD+EI+ LI    +F      T E+C +LN+       A N
Sbjct: 224  NIFQDDIPVTIIFKAMGIVSDQEIMQLIGTEEEFMKKFAPTLEECHVLNVF------AQN 277

Query: 310  KCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSL----HGTKQKARFLGYMV 365
            +   F   +   K    +    T    +  ++ + T +   +       K KA ++  M+
Sbjct: 278  QALRFLSNKRKQKRYSVIKSSVT----DEMKDILATNILSHVPVIDFNFKMKATYIALMI 333

Query: 366  KCLLQAYSGRRKCDNRDDFRNKRLELAGELLER-----------ELKVHIAHARKRMAKA 414
            + +++A S  +  D+RD + NKRLELAG LL             ELK  IA       KA
Sbjct: 334  RKVMKAQSDGKLVDDRDYYGNKRLELAGSLLSLMFEDLFKRFNWELK-QIADKNIPKIKA 392

Query: 415  LQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQ 474
             Q D         I  ++    +TNGL+ A S+G W+    + ER  G+   L R + + 
Sbjct: 393  AQFD---------IVKHMRQDQITNGLAFAISSGNWTIKRFKMER-HGVTQVLSRLSYIS 442

Query: 475  TLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI- 533
             L  + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T I 
Sbjct: 443  ALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEGCGLVKNLALMTHITTEID 502

Query: 534  LEPIFEQLFNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVSELRRKRRRKE 591
             EPI    FN G+E +       +  K  + VF++G+ +G+ K+    V+  R  RR+  
Sbjct: 503  EEPIVRLAFNLGVENVNILGGEEINNKKVYMVFLNGNILGIVKNYQRLVNVFRLLRRKGL 562

Query: 592  LPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDH 645
            +   V I        ++I  D GR+ RP ++V+N         IK LE    +F+  L  
Sbjct: 563  INGFVSIHTQHQHRCIQISSDGGRLCRPYIIVQNGNPLIQENHIKLLEQGIRSFEDFLQE 622

Query: 646  GIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDH 705
            G+IE +   EE D   A+   ++ +        K TH E++   LLG+  G++P+ +H+ 
Sbjct: 623  GLIEYLDVNEENDSSIAFNESHINE--------KTTHLEIEPFTLLGVCAGLVPYPHHNQ 674

Query: 706  ARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHI 765
            + R  YQ      QA+G    N   R+DTL + L YPQ P+ ++   +           +
Sbjct: 675  SPRNTYQCAM-GKQAMGTIGYNQRNRIDTLMYNLVYPQTPMVKSRTIE-----------L 722

Query: 766  LPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVK 825
            +   +L  GQNA VAV  + GY+ ED+L++N+AS++RG  R    R+ K  +     Q  
Sbjct: 723  INFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGFGRCLIYRNAKCTLKRYANQTY 782

Query: 826  RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSG----------- 874
             R    +++    +  + + D +D DG    G  +++  +++ K + +            
Sbjct: 783  DRIMGPLID-SNTKKPVWKHDIIDSDGIAAPGEMVENRKVMVNKSSPAANIGPVNAGNVQ 841

Query: 875  -----ADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGV 929
                  D  +  K      V+KV++SSN +      + LRQ R P +GDKFSS HGQKGV
Sbjct: 842  TQTEYKDVPVVFKGPVPAYVEKVMISSNAEDAFLIKLLLRQTRRPEIGDKFSSRHGQKGV 901

Query: 930  LGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRY 989
             G +  QE+ PF   GI PD+++NPH FPSR T G+L+E   GK       G+  G   Y
Sbjct: 902  TGLIVEQEDMPFNDYGICPDMIMNPHGFPSRMTVGKLIELLAGKA------GVIKGEFHY 955

Query: 990  ATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKV 1049
             T F    V  +  +L + G++  G +  Y G TGE +++ I+ GP +YQ+L HM +DK+
Sbjct: 956  GTAFGGSKVKDVCNELVKHGYNYLGKDIFYSGITGEPLQAYIYSGPVYYQKLKHMVQDKM 1015

Query: 1050 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHIC 1109
              R+ GP   LTRQP   R + GG++ GEMERDCLI +GA+  L ERL   SD++ + +C
Sbjct: 1016 HARSRGPRAVLTRQPTEGRAKEGGLRLGEMERDCLIGYGASMMLIERLMISSDAFDVDVC 1075

Query: 1110 RKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
             KC             G      +C  C S   +   ++PY  KLL QEL SM I 
Sbjct: 1076 NKC-------------GLMAYSGWCHSCRSSSCVSTISMPYACKLLFQELQSMNIV 1118


>gi|342879891|gb|EGU81124.1| hypothetical protein FOXB_08398 [Fusarium oxysporum Fo5176]
          Length = 1150

 Score =  487 bits (1253), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 373/1151 (32%), Positives = 560/1151 (48%), Gaps = 145/1151 (12%)

Query: 88   FGQVTLDKPSFFAGNGGDEH-DMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKT 146
            F  + +D P          H ++ P   RL++MTY++ + V +Q+          DK + 
Sbjct: 67   FTDIRVDSPRRQDWTDNKSHSEVTPMECRLRDMTYAAPIFVDIQY--------IRDKQRI 118

Query: 147  GREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFIIKG 200
             R+             N+ +GR+PVM+KS  C + G       E  +C  D GGYFII G
Sbjct: 119  VRK-------------NVPLGRMPVMLKSSKCRLAGANNTQMEEMNECPLDPGGYFIIGG 165

Query: 201  AEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEK 255
             EKV + QEQ+   R+ V     +N +  +V   +  ++++  V L         K    
Sbjct: 166  TEKVILIQEQLSKNRIIVEADEKNNIISASVTSSTHERKSKTYVTL---------KKDRI 216

Query: 256  VLSVYFLSTEIPIWILFFALGVSSDKEIVNLI---DFTCEDCSILNILFASIHDADNKCD 312
            +L+   L   IPI I+  ALG  SD EI+ L+   D   +D  ++N       D   K  
Sbjct: 217  LLTHNVLVEGIPIVIILKALGGLSDMEIMQLVAGSDGRYQDEFLVNF------DEATKAG 270

Query: 313  EFRKGRNALKYVDKLIK-GT---TFPPG-------ESTEECMNTYL-FPSLHGTK--QKA 358
             F +   AL+Y+   +K G+   TF P        E  +   N  +    + G     KA
Sbjct: 271  VFTQ-HQALEYIGAKVKMGSRRGTFGPQVRRNHVEEGLDALANLVIAHVPIEGLDFYPKA 329

Query: 359  RFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKA 414
             ++  M + +L A    +  D+RD   NKRLELAG+LL    E   K   +  +  + K 
Sbjct: 330  IYVAQMTRRVLIAAHNPKLVDDRDFVGNKRLELAGQLLSLLFEDLFKQFTSGVKMSIDKF 389

Query: 415  LQRDLYGDRTVRPIEYYLDASILTN---GLSRAFSTGAWSHPFKRTERISGIVANLGRAN 471
            L+++   +R V     ++ ++   N   G++RA  TG W+       R +G+   L R +
Sbjct: 390  LKKN---NRAVPLDAVHMISNHANNIGYGINRAIQTGNWTVKRFNMNR-AGVTHVLSRLS 445

Query: 472  PLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST 531
             +  L  + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T
Sbjct: 446  YIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCTSDTPEGEACGLVKNLALMTHITT 505

Query: 532  SI-LEPIFEQLF--NSGMEKLAD--DASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRK 586
            ++  EP+   +F  ++G+E + +   A     G + + ++G    + +    F  + R  
Sbjct: 506  NVDEEPVKRWIFTLDAGVEPIRNFSGAEMHREGSYIIHINGTPFALTRYPKRFAQKFRTM 565

Query: 587  RRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTF 639
            RRR  +   V I  +   + V I  D GRI RP ++V+N GK       ++ L+    TF
Sbjct: 566  RRRGWISPFVGININTHFNAVHIATDEGRICRPYIIVKN-GKQKLKPEHLRLLQMGKATF 624

Query: 640  QALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIP 699
               L+ GI+E +   EE D         L+   ED+     TH E++   +LG   G+IP
Sbjct: 625  DDFLNRGIVEYLDVNEENDA--------LITIYEDQVTQSTTHLEIEPFTVLGAVAGLIP 676

Query: 700  FANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPG 759
            F +H+ + R  YQ      QAIG    N   R+DTL + L YPQRP+   +IS  +   G
Sbjct: 677  FPHHNQSPRNTYQC-AMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPM---VISKTIQLIG 732

Query: 760  YGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDN 819
            Y         +L  GQNA V V  + GY+ ED+LV+N+AS++RG  R +  R Y  E+  
Sbjct: 733  YD--------KLPAGQNATVVVMSYSGYDIEDALVLNKASIDRGFGRCQVFRKYTTELQK 784

Query: 820  KEMQVKRRSSD-DMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA------- 871
                 + R  D +    GKI+ +I + ++LDDDG   +G  + SG+ ++ K         
Sbjct: 785  YPNGRRERIGDPENEGDGKIKRRIAKHEALDDDGLAIVGYKVNSGEAMVKKETPLDQTST 844

Query: 872  ----DSGA----DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSM 923
                D G     D S+  +  +   + KV++S  +       V  RQ R P LGDKFSS 
Sbjct: 845  GIGLDRGPAEFRDSSVSYRIADPAYIDKVMISQTEKDTTVIKVQTRQTRRPELGDKFSSR 904

Query: 924  HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGIC 983
            HGQKGV+G +  QE+ PF+  G+ PDI++NPH FPSR T G+LLE   GK     G+   
Sbjct: 905  HGQKGVVGIIVEQEDLPFSDSGLSPDIIMNPHGFPSRMTVGKLLECLTGKASIVHGRPDY 964

Query: 984  SGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIH 1043
                 +   F +  ++ +++ L   GFS  G +    G TGE + + +F GP +YQRL H
Sbjct: 965  G----FGDAFRSHPLEEMSQVLVDHGFSWEGKDYFTSGITGEPLEAYVFNGPIYYQRLKH 1020

Query: 1044 MSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDS 1103
            M +DK+  R+ GP   LTRQP   R R GG++ GEMERDCLIA+GA+  L ERL   SD 
Sbjct: 1021 MVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMISSDG 1080

Query: 1104 YQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSM- 1162
             ++ IC++C            G    +G YC  C S  ++ K  +PY AKLL QEL SM 
Sbjct: 1081 TEIDICQQC------------GLFGYKG-YCHTCKSTREVTKMTMPYAAKLLVQELISMN 1127

Query: 1163 -GITLKFDTEF 1172
             G+ L+ D EF
Sbjct: 1128 VGVRLQMDDEF 1138


>gi|224132576|ref|XP_002321356.1| predicted protein [Populus trichocarpa]
 gi|222868352|gb|EEF05483.1| predicted protein [Populus trichocarpa]
          Length = 1141

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 365/1201 (30%), Positives = 578/1201 (48%), Gaps = 156/1201 (12%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQK---AFDSFGETIVEPGYDPSKKGEGEWRYASMRFG 89
            F    GLV   ++S+N FI  G++K   A D    T+     DPS           +RF 
Sbjct: 27   FLKGRGLVKQHLDSFNYFINIGIKKIVRANDRIVSTV-----DPS---------LYLRFT 72

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
             V + KPS       ++  + P   RL + TY++ + V +++   +  R         +E
Sbjct: 73   DVKIGKPSMVVDAISEQ--ITPHMCRLSDTTYAAPILVNIEYISGSHGR---------KE 121

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEK 203
            + I+ +V        +IGR+P+M++S  C + G  +      G+C  D GGYF++KG EK
Sbjct: 122  KMIKNDV--------VIGRMPIMLRSCCCVLYGKNEAELARLGECPLDPGGYFVVKGTEK 173

Query: 204  VFVAQEQICLKRLWVSN----SMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            V + QEQ+   R+ + N    ++  +V   +E  +++ ++ L++  K          L +
Sbjct: 174  VILIQEQLSKNRIIIDNDKKGNINASVTSSTEATKSKTVI-LMEKEKM--------YLCL 224

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
               + +IPI ++  A+G+ SD+E+V ++     D     +L  SI +  +        + 
Sbjct: 225  NQFAKKIPIMVVMKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECASH--GVYTQQQ 279

Query: 320  ALKYVDKLIKGTTFPPGESTEECMNTYLFPSL---------HGTKQKARFLGYMVKCLLQ 370
            AL+Y++ ++K +T+    + +E     +   +         +  + K  ++  M++ +++
Sbjct: 280  ALEYLEAMVKRSTYSSSSTEKENRALAILRDVFIANVPVRKNNFRPKCIYVAVMLRRMME 339

Query: 371  AYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDRTVR 426
            A   +   D++D   NKRLEL+G+L+    E   K  I   +K     L +    +R+ R
Sbjct: 340  ALLNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTMITEVQKTADTLLVKQ---NRSSR 396

Query: 427  -PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQ 485
                 Y+    +TNGL RA STG W     R  R  G+   L R + + +L  + R   Q
Sbjct: 397  FDFSQYIVRDSITNGLERALSTGNWDVKRFRMNR-KGVTQVLVRLSYMASLGHMTRISPQ 455

Query: 486  VQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNS 544
             + + KV   R   PS WG +C   TP+GE CGLVKNL +   V+T   E P+       
Sbjct: 456  FEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEESPLISLCKCL 515

Query: 545  GMEKLADDASYSL--GGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
            G+E L   +   L     F V  +G  +G  +    F + +R+ RR  ++   V +  +E
Sbjct: 516  GVEDLELLSGEELHTPNSFLVIFNGLILGKHRRPQQFANAMRKLRRAGKIGEFVSVFVNE 575

Query: 603  LQSEVRIFMDAGRILRPLLVVEN-MGKIKS-----LEGKNYTFQALLDHGIIELVGTEEE 656
             Q  V I  D GR+ RPL++ +  + +IK      L     TF   L  G+IE +   EE
Sbjct: 576  KQRAVYIASDGGRVCRPLVIADKGVSRIKEHHMRELMDGARTFDDFLHEGLIEYLDVNEE 635

Query: 657  EDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKH 716
             +   A          E +   + TH E++   +LG+  G+IP+ +H+ + R  YQ    
Sbjct: 636  NNALIAL--------YEWEATPETTHIEIEPFTILGVVAGLIPYPHHNQSPRNTYQC-AM 686

Query: 717  SSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQN 776
              QA+G    N + R+D+L + L YPQRPL  T   + +G    G            GQN
Sbjct: 687  GKQAMGNIAYNQASRMDSLLYLLVYPQRPLLTTRTIELVGYDKLG-----------AGQN 735

Query: 777  AIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFG 836
            A VAV  + GY+ ED++VMN+ASL+RG  R   ++ Y         + +  +SD ++   
Sbjct: 736  ATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVLKKYTC----TNQKYENGASDRILRPR 791

Query: 837  KIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---------DSGADHSIKLK----- 882
            K +    R   LDDDG    G  ++ GDI I K +          + A   +K +     
Sbjct: 792  KNEE---RERVLDDDGLAAPGEIIRHGDIYINKESPIETRGPLKSAAALADVKYRPCAQI 848

Query: 883  ----HTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQEN 938
                  E  +V +V L S+ +        +R  R P +GDKFSS HGQKGV G +  QE+
Sbjct: 849  FKGTEGESCVVDRVALCSDKNNNLCIKYKIRHTRRPEVGDKFSSRHGQKGVCGTIIQQED 908

Query: 939  FPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPS- 997
            FPF+ +GI PD+++NPH FPSR T G+++E   GK       G+  G   Y + F  PS 
Sbjct: 909  FPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA------GVSCGRFHYGSAFGEPSG 962

Query: 998  ----VDAI------TEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSED 1047
                V+AI       E L + GFS  G + +Y G TG  +++ IF+GP +YQ+L HM  D
Sbjct: 963  HADRVEAIRHFLSLIETLVKHGFSYNGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLD 1022

Query: 1048 KVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMH 1107
            K+  R +GP   LTRQP   R R GG++ GEME+DCL+A+G +  L+ERL   SD ++  
Sbjct: 1023 KMHARGSGPRVMLTRQPTDGRARNGGLRVGEMEKDCLVAYGTSMLLYERLMVSSDQFEAQ 1082

Query: 1108 ICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLK 1167
            +CR C  +    Q       K++   C  C +GD +    +PY  KLL QEL SM I  +
Sbjct: 1083 VCRACGLLGYYNQ-------KLKAAMCTTCKNGDKVSTMKLPYACKLLIQELQSMNIVPR 1135

Query: 1168 F 1168
             
Sbjct: 1136 L 1136


>gi|315048479|ref|XP_003173614.1| DNA-directed RNA polymerase III subunit RPC2 [Arthroderma gypseum CBS
            118893]
 gi|311341581|gb|EFR00784.1| DNA-directed RNA polymerase III subunit RPC2 [Arthroderma gypseum CBS
            118893]
          Length = 1210

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 376/1224 (30%), Positives = 563/1224 (45%), Gaps = 195/1224 (15%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN F++  L+K   S  E  +    DP            ++F  +
Sbjct: 93   AFLKVKGLVKQHIDSYNYFVEVQLKKIVQSSAE--IRSDIDPK---------FYIKFHDI 141

Query: 92   TLDKPSFF-AGNGGDEHD--MFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGR 148
             L  P        G + D  + P   RL++MTY++ + V  ++ V  ++RV  +      
Sbjct: 142  YLGAPRRTDEEQSGIKIDSTITPNECRLRDMTYAAPILVDFEY-VRGRQRVKRN------ 194

Query: 149  EQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAE 202
                             IGR+PVM++S  C +            +C  D GGYFI+ G E
Sbjct: 195  --------------GTAIGRMPVMLRSSKCVLSNKSAREMYTLHECPLDPGGYFIVNGTE 240

Query: 203  KVFVAQEQICLKRLWVSNSMGWTVAYKS------ENKRNRLIVRLVDMSKFEDIKGGEKV 256
            KV + QEQ+   R+ V       +   S      E K    I+          +K G   
Sbjct: 241  KVILVQEQLSKNRVIVETDPKKEIVQASVTSSSHERKSKSYII----------MKKGRIY 290

Query: 257  LSVYFLSTEIPIWILFFALGVSSDKEIVNLI---------DFTC--EDCSILNILFASIH 305
            L    L+ +IPI IL  A+G+ SDKE++ L+         DF    E+   LNI      
Sbjct: 291  LRHNVLNDDIPIVILLKAMGIQSDKEMLLLVAGVDMEYQEDFAINFEEAVKLNIY----- 345

Query: 306  DADNKCDEFRKGRNALKYVDKLI----KGTTFPPG---------ESTEECMNTYLFPSLH 352
                        + AL+Y+   I    K + F P          E+    + +++     
Sbjct: 346  ----------TQQQALEYLGARIKINRKASGFGPARRNYVAEAIEAISSVIISHVQVQDM 395

Query: 353  GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLER-----------ELK 401
              + KA ++ +M + +L A       D+RD   NKRLELAG+LL             ++K
Sbjct: 396  NFRPKALYVTHMARRVLMAKLDPSLVDDRDYVGNKRLELAGQLLALLFEDLFKKFCFDIK 455

Query: 402  VHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERIS 461
            ++I    K+  +    D Y      P+   +  + +T G++RA +TG WS    R ER +
Sbjct: 456  MNIDKVLKKPVRTEAFDAY------PV-VAIHGNHITQGMNRAIATGNWSLKRFRMER-A 507

Query: 462  GIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVK 521
            G+   L R + +  L  + R   Q + T KV   R   PS +G +C   TP+GE CGLVK
Sbjct: 508  GVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVK 567

Query: 522  NLGV-TGLVSTSILEPIFEQLFNSGMEKLADDASYSLGGK-------FKVFVDGDWIGVC 573
            NL + T + +    EP+ + +F  G E +      ++GG+       + VF++G  I + 
Sbjct: 568  NLALMTHITTNDEEEPVQKLVFTLGAEDIQ-----TVGGRECFGQGAYIVFMNGSPIALT 622

Query: 574  KDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE------NMG 627
            +    F++  RR RR   +   V +  +  Q  V +  D GRI RPL++VE         
Sbjct: 623  RRPKYFLNAFRRLRRMGRISEFVSVFINHNQKCVHVSTDDGRICRPLIIVEKKRSRVTAR 682

Query: 628  KIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDM 687
             + +L      F   L HG++E V   EE D   A          E +     TH E++ 
Sbjct: 683  HLSALRNGTMDFDDFLSHGLVEYVDVNEENDANIAV--------YEREIDANTTHLEIEP 734

Query: 688  SFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLF 747
              +LG   G+IP+ +H+ + R  YQ      QAIG    N  +R+D+L + + YPQ+P+ 
Sbjct: 735  FTVLGAVAGLIPYPHHNQSPRNTYQC-AMGKQAIGAIANNQFLRIDSLLYAMVYPQKPMV 793

Query: 748  RTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRS 807
            +T   +           +    +L  GQNA+VAV  + GY+ ED+LV+N+ S++RG  R 
Sbjct: 794  KTRTIE-----------LTNYDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRC 842

Query: 808  EHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVI 867
            +  R Y A + +     K R        G    K G    LD+DG   +G  +  G++ I
Sbjct: 843  QVFRKYSANLKSYSNGTKDRLVGPTRENGVSIRKHGL---LDNDGLAAVGEKVSPGEVYI 899

Query: 868  GKYAD--------SGADHSIKLKHT---------ERGMVQKVVLSSNDDGKNFSVVSLRQ 910
             K           +G+D  + +K+          +   + KV++S+ +       V  RQ
Sbjct: 900  NKETPDNALSSGITGSDAGLPVKYNPTPQTYKLPDYSYIDKVMISTTEGESQLIKVQTRQ 959

Query: 911  VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA 970
             R P +GDKFSS HGQKGV+G +  Q + PFT  G+VPDI++NPH FPSR T G++LE  
Sbjct: 960  TRRPEVGDKFSSRHGQKGVVGIIAEQADMPFTDTGLVPDIIMNPHGFPSRMTVGKMLELV 1019

Query: 971  LGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSL 1030
             GK       GI SG   Y TPF    V+ ++  L   GFS  G + L  G TGE +   
Sbjct: 1020 AGKA------GIVSGQFGYGTPFGGSPVEEMSAILVNHGFSYGGKDYLTSGITGEPLTYY 1073

Query: 1031 IFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAA 1090
            +F GP +YQ+L HM +DK+  R  GP   LTRQP   R R GG++ GEMERDCLIA+G +
Sbjct: 1074 VFTGPIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTS 1133

Query: 1091 ANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPY 1150
              L ERL   SD +++ +C  C             G      +C+ C S   +VK  +PY
Sbjct: 1134 QLLLERLMISSDRHEVDVCESC-------------GFMGYSGWCQRCKSSAGVVKMVIPY 1180

Query: 1151 GAKLLCQELFSMGIT--LKFDTEF 1172
             AKLL QELFSM +   L+   EF
Sbjct: 1181 AAKLLVQELFSMNVVARLRLQDEF 1204


>gi|170097637|ref|XP_001880038.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164645441|gb|EDR09689.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1142

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 367/1191 (30%), Positives = 550/1191 (46%), Gaps = 147/1191 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETI--VEPGYDPSKKGEGEWRYASMRFG 89
            +F    GLV   I+S+N F+   ++    +  +    V+P +         W    +++ 
Sbjct: 40   AFLKVKGLVKQHIDSFNYFVDIDIKNIVRANNKVTSDVDPRF---------W----LKYT 86

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
             + +  P        D+  + P   RL+++TY + + V +Q+              T  +
Sbjct: 87   DINVGFPDRNELEAIDKR-VTPHECRLRDITYGAPIVVTIQY--------------TRGK 131

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG------DCDFDHGGYFIIKGAEK 203
              +Q+        N+ IGR+P+M++S  C + G  +       +C  D GGYF++KG EK
Sbjct: 132  SIVQR--------NVNIGRLPIMLRSSKCVLTGRTEAQLARMTECPLDPGGYFVVKGTEK 183

Query: 204  VFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLS 263
            V + QEQ+   R+ V       V   S        ++      +   K G   L    + 
Sbjct: 184  VILVQEQLSKNRIIVETDTVKGVVQASCTSSTHGGLK---SKTYVATKKGRIYLRHNSIH 240

Query: 264  TEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKY 323
             ++PI I   ALG+ SDKEI+ L   T E  +  N   A++ DA       R+   AL+Y
Sbjct: 241  EDVPIVIALKALGIQSDKEILLLTAGTTE--AYKNTFSANLEDAAKLGVYTRQ--QALEY 296

Query: 324  VDKLIK------GTTFPPGESTEECMNTYLFPSLHGT----KQKARFLGYMVKCLLQAYS 373
            +   +K      G   P  E   E + T +   +       + KA F+  M + +L A  
Sbjct: 297  IGSRVKINRRVMGPRRPAWEEALEALATIVLAHVPVNGLDFRSKAIFVATMTRRVLMAMQ 356

Query: 374  GRRKCDNRDDFRNKRLELAGELL-----------ERELKVHIAHARKRMAKALQRDLYGD 422
                 D+RD   NKRLELAG+LL              LK+ I    K+ ++  + D Y  
Sbjct: 357  DENMVDDRDYVGNKRLELAGQLLALLFEDLFKTYNSNLKIAIDKVLKKPSRTSEFDAYN- 415

Query: 423  RTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
                     +    LT+G  RA STG WS    + ER +G+   L R + +  L  + R 
Sbjct: 416  ------TMQMQGDHLTSGFVRAISTGNWSLKRFKMER-AGVTHVLSRLSFISALGMMTRI 468

Query: 483  RQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQL 541
              Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + E PI    
Sbjct: 469  SSQFEKTRKVSGPRALQPSQWGVLCPSDTPEGEACGLVKNLALMTHITTDVEEEPITRLA 528

Query: 542  FNSGME--KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIK 599
            F  G+E   L         G F V V+G  IGV +    FV++ R  RR +     V + 
Sbjct: 529  FMLGIEDINLTTGTEIYGPGVFVVNVNGTIIGVTRYPARFVAQFRSLRRARRFSEFVSVY 588

Query: 600  RDELQSEVRIFMDAGRILRPLLVVEN-MGKIKS-----LEGKNYTFQALLDHGIIELVGT 653
             +     V I  D GRI RP ++VEN   K+ S     L+  N TF   L  G++E +  
Sbjct: 589  INHHHHAVHIASDGGRICRPAIIVENGRPKVASEHMMHLKKGNVTFDDFLRKGLVEYLDV 648

Query: 654  EEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQS 713
             EE D        Y+     D  P   TH E++   +LG   G+IP+ +H+ + R  YQ 
Sbjct: 649  NEENDT-------YIALYESDIVPAT-THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQC 700

Query: 714  QKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYN 773
                 QAIG    N   R+DTL +   YPQ+P+ +T   + +G              L  
Sbjct: 701  -AMGKQAIGAIGYNQMNRIDTLLYLSVYPQQPMVKTKTIELIG-----------YDRLPA 748

Query: 774  GQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMV 833
            GQNA VAV  + GY+ ED+L++N+ASL+RG  R + +R     +         R +D  +
Sbjct: 749  GQNATVAVMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLIRKYPNGTFDRLADAPL 808

Query: 834  N-FGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADS--------GADHSIKLKHT 884
            +  G++  K    D +  DG   +G  +  GD+ + K + +        G   S+  K+T
Sbjct: 809  DENGQLNKK---YDIIQSDGLAGVGERVDPGDVYVNKQSPTNATDNTFTGQAASVPYKNT 865

Query: 885  E-------RGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQE 937
                     G + KV++S  ++ +    V +RQ R P LGDKFSS HGQKGV G + +QE
Sbjct: 866  PLTYKSPVAGNIDKVMISDTENDQTLIKVLIRQTRRPELGDKFSSRHGQKGVCGLIVNQE 925

Query: 938  NFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPS 997
            + PF   GI PD ++NPH FPSR T G+++E   GK       G+ +G  +Y T F    
Sbjct: 926  DMPFNDDGINPDTIMNPHGFPSRMTVGKMIELLAGKA------GVLAGKLQYGTAFGGSK 979

Query: 998  VDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPV 1057
            V+ ++  L   GFS  G + L  G TGE + + ++ GP +YQ+L HM  DK+  R  GP 
Sbjct: 980  VEDMSRILIDHGFSYAGKDMLTSGITGEPLEAYVYFGPIYYQKLKHMVMDKMHARARGPR 1039

Query: 1058 HPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVAN 1117
              LTRQP   R R GG++ GEMERDCLI +GA   L ERL   SD ++++ C +C     
Sbjct: 1040 ATLTRQPTEGRSREGGLRLGEMERDCLIGYGATQLLLERLMISSDKFEVNACEEC----- 1094

Query: 1118 VIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
                    G      +C  C S   + +  +PY AKLL QEL +M +  + 
Sbjct: 1095 --------GLMGYNGWCTYCKSSKKMAQLTIPYAAKLLFQELMAMNVVPRL 1137


>gi|320165828|gb|EFW42727.1| polymerase III polypeptide B [Capsaspora owczarzaki ATCC 30864]
          Length = 1138

 Score =  486 bits (1252), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 367/1191 (30%), Positives = 560/1191 (47%), Gaps = 138/1191 (11%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+S+N F+   ++K   +     +    DP+       RY +++ G  
Sbjct: 37   AFLKVKGLVKQHIDSFNYFLNVEIRKIVQANDR--ITSDADPT----FYLRYTNIQVGAP 90

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
            T ++   +A +      + P+  RL++MTY++ + V V++   +QK V            
Sbjct: 91   TAEEYYSYATSP----PIAPQQCRLRDMTYAAPITVNVEYMRGSQKIVRD---------- 136

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVF 205
                       N+ IGR+P+M++S  C + G  +      G+C  D GGYFIIKG EKV 
Sbjct: 137  -----------NLFIGRMPIMLRSSNCILHGKSRAELTKLGECPNDPGGYFIIKGVEKVI 185

Query: 206  VAQEQICLKRLWVSNSM----GWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYF 261
            + QEQ+   R+ + N      G +V   ++ +++R  V           K G   L    
Sbjct: 186  LIQEQLSKNRMIIENDRKGIPGASVTSSTQERKSRTNVV---------CKAGRFYLKHNT 236

Query: 262  LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFA-SIH---DADNKCDEFRKG 317
            LS +I + ILF ALGV +D+EI+ +I F       +   FA SI       N+  +F   
Sbjct: 237  LSEDINVVILFKALGVETDQEIMQMIGFEDMYQQAIAATFAESIEHGITTQNQALDFVGS 296

Query: 318  RNALKYVDKLIKGTTFPPGESTEECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYS 373
            R  ++   +   G      +   E + + +   +    +  + K+ +L  MV+ ++ A +
Sbjct: 297  R--VRLAKRAWGGARKSKVDEARELLASIILAHVPVHKYNFRPKSLYLALMVRRVILALN 354

Query: 374  GRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR-PIEYYL 432
                 D++D + NKRLELAG+LL    +         + K     +   R  +  +    
Sbjct: 355  EALPVDDKDYYGNKRLELAGQLLALLFEDVFKKFNTELKKVTDLTIPKQRATQYDVVKKF 414

Query: 433  DASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKV 492
               I+++GL+ A STG W+    + +R  G+   L R + +  L  + R   Q + T KV
Sbjct: 415  RPQIISDGLTHAISTGNWTVKRFKMDR-GGVTQVLSRLSYISALGMMTRISSQFEKTRKV 473

Query: 493  GDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQL-FNSGMEKLAD 551
               R   PS WG +C   TP+GE CGLVKNL +   ++T   E    +L FN G+E +  
Sbjct: 474  SGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDDEESNIARLAFNFGVEDINV 533

Query: 552  DASYSLG--GKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRI 609
             ++  L     + VF++G  +GV       V   R  RR   L   + I  ++ Q  V I
Sbjct: 534  LSAEDLTRDESYLVFLNGLLLGVTIHPTILVRAFRMLRRDGRLSHFLSICPNDRQRCVYI 593

Query: 610  FMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAW 663
              D GR+ RP ++V+  G       ++ L  K   F   L  G+IE +   EE     A 
Sbjct: 594  ASDGGRVCRPYIIVDKNGPKVTNTHLERLAQKVLRFDDFLKLGLIEYLDVNEENGANIAM 653

Query: 664  GIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGF 723
                     E +     TH E++   +LG+  GIIP+ +H+ + R  YQ      QAIG 
Sbjct: 654  --------YESEIKPYTTHLEIEPFTILGVCAGIIPYPHHNQSPRNTYQC-AMGKQAIGT 704

Query: 724  PTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNV 783
               N  +R DTL + L YPQRP+ +T   + +        H +P      GQNA VAV  
Sbjct: 705  IAANQYVRFDTLLYTLLYPQRPMVQTRTIELI------DFHNMP-----AGQNACVAVMS 753

Query: 784  HLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDN-KEMQVKR-----RSSDDMVNFGK 837
            + GY+ ED+L++N+ASL+RG  R    R     +     M V R     R+ DD      
Sbjct: 754  YSGYDIEDALILNQASLDRGFGRCMVYRKQTVSIKTYPNMLVDRIVAPTRNRDD------ 807

Query: 838  IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTE------------ 885
              S++ + D LD +G    G  +++G  ++ K       + I+  H              
Sbjct: 808  -SSRLAKFDVLDQEGICRPGERVENGSTLVLKETPVNTSNPIQDPHNAAVQYKPAYVSYK 866

Query: 886  ---RGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT 942
                G+V KV+L++N +  +   + LR  R P +GDKFSS HGQKGV G +  QE+ PF+
Sbjct: 867  GPCEGVVDKVLLTNNSEDNHLIKILLRTTRRPEVGDKFSSRHGQKGVCGLIVRQEDMPFS 926

Query: 943  IQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAIT 1002
              GI PDI++NPH FPSR T G+L+E   GK  A +GK        Y T F    V  ++
Sbjct: 927  DIGICPDIIMNPHGFPSRMTVGKLMEFLSGKAGALIGKF------HYGTAFGGDKVVDMS 980

Query: 1003 EQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTR 1062
            + L   GF+  G + +  G TGE + + IF GP +YQ+L HM  DK+  R  GP   LTR
Sbjct: 981  KILVEHGFNYAGKDFVTSGITGEPLSAYIFFGPVYYQKLKHMVMDKMHARARGPRAVLTR 1040

Query: 1063 QPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRV 1122
            QP   R R GG++ GEMERDCLI +GA+  L ERL   SD + +H+CR C          
Sbjct: 1041 QPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDKFDVHVCRAC---------- 1090

Query: 1123 VGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTEFC 1173
               G      +C+ C +   +   ++PY +KLL QEL SM I  +   E C
Sbjct: 1091 ---GLLGYESWCQYCKASSSMSILSIPYASKLLFQELQSMNIVPRLRLETC 1138


>gi|6606133|gb|AAF19079.1|AF107807_1 DNA-dependent RNA polymerase II RPB140, partial [Leotia viscosa]
          Length = 938

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 340/966 (35%), Positives = 483/966 (50%), Gaps = 118/966 (12%)

Query: 201  AEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSE-NKRNRLIVRLVDM--SKFEDIKG 252
            +EKV +AQE+     + V      +   +    +S   K +RLI  L     SK ++ +G
Sbjct: 1    SEKVLIAQERSAANIVQVFKKPPPSPTPYVAEIRSALEKGSRLISSLTIKLHSKGDNQRG 60

Query: 253  --GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA-- 307
              G  + S   ++  +IP+ I+F ALGV SD++I+N I +   D  +L +L   I +A  
Sbjct: 61   SFGATIKSTLPYIKADIPMGIVFRALGVVSDEDILNHICYDRNDTQMLEMLKPCIEEAFV 120

Query: 308  ----DNKCDEFRKGRNALKYV-DKLIKGTTFPPGESTEECMNTYLFPSLH----GTKQKA 358
                +   D   K  NA+    DK IK           + M   L P +        +KA
Sbjct: 121  IQDREVALDYIGKRGNAMGLTRDKRIK--------YARDIMQKELLPHISQKEGSETRKA 172

Query: 359  RFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRD 418
             FLGYMV  LLQ   GRR+ D+RD F  KRL+LAG LL +  +       + + K  QR 
Sbjct: 173  FFLGYMVHKLLQCALGRRETDDRDHFGKKRLDLAGPLLAKLFRNLFKKLTQDLFKYTQRC 232

Query: 419  LYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVD 478
            +   +   P    + ++ LT GL  + +TG W    K     +G+   L R     TL  
Sbjct: 233  VENRKEFNP-ALGIKSTTLTAGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSH 291

Query: 479  LRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPI 537
            LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   V+  +  +PI
Sbjct: 292  LRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVTVGTPSDPI 351

Query: 538  FEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVE 597
             E +    ME L +          KVFV+G W+GV +D    V  +R  RR   +  +V 
Sbjct: 352  VEFMIQRSMEVLEEYEPLRSPNATKVFVNGVWVGVHRDPAHLVQTVRDLRRSHHISYEVS 411

Query: 598  IKRDELQSEVRIFMDAGRILRPLLVVEN-------------MGKIKSLEGKN-------- 636
            + RD    E +IF DAGR+ RPL V++N              G IK LE           
Sbjct: 412  LIRDIRDREFKIFTDAGRVCRPLFVIDNDVNSKNKGNLVLNKGHIKRLEDDTTLPLGLDL 471

Query: 637  --------YTFQALLDHGIIELVGTEEEE---------DCCTAWGIKYLLKDIED----- 674
                    + FQ L+D G++E V  EEEE         D   +  ++   +  ED     
Sbjct: 472  EEKQERGYFGFQGLIDEGVVEYVDAEEEETVMIVMTPEDLEISRQLQAGYQIQEDNSGEL 531

Query: 675  ----KKPIK-----FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPT 725
                K P+K     +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   
Sbjct: 532  NRRVKAPMKPTAHIWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAM-GKQAMGVFL 590

Query: 726  TNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHL 785
            TN   R+DT+++ L+YPQ+PL  T   +            L   EL  GQNAIVA+  + 
Sbjct: 591  TNFDQRMDTMANILYYPQKPLATTRSME-----------YLKFRELPAGQNAIVAILCYS 639

Query: 786  GYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRV 845
            GYNQEDS++MN++S++RG+FRS   RSY  +     M V  +      N   ++ K G  
Sbjct: 640  GYNQEDSVIMNQSSIDRGLFRSLFFRSYTDQEKRIGMNVVEQFEKPFRN-DTLKLKHGTY 698

Query: 846  DSLDDDGFPFIGANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQ 890
            D LDDDG    G  +   DI+IGK A                S  D S  L+ TE G+V 
Sbjct: 699  DKLDDDGLVAPGVRVSGEDIIIGKTAPIAPDNEELGQRTKAHSKRDASTPLRSTENGIVD 758

Query: 891  KVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDI 950
            +V++++N +G  F  V +R  + P +GDKF+S HGQKG +G    QE+ PFT +GIVPD+
Sbjct: 759  QVLITTNAEGLRFVKVRMRTTKVPQIGDKFASRHGQKGTIGITYKQEDMPFTREGIVPDL 818

Query: 951  VINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGF 1010
            +INPHA PSR T   L+E  L K +A+L     SG +  ATPF   +VD +++ L   G+
Sbjct: 819  IINPHAIPSRMTIAHLIECQLSK-VASL-----SGYEGDATPFTDVTVDNVSKLLREHGY 872

Query: 1011 SKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKR 1070
               G E +Y G TG  + + +F+GPT+YQRL HM +DK+  R  GPV  LTRQPV  R R
Sbjct: 873  QSRGFEIMYHGHTGRKLTAQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRAR 932

Query: 1071 FGGIKF 1076
             GG++F
Sbjct: 933  DGGLRF 938


>gi|6606131|gb|AAF19078.1|AF107806_1 DNA-dependent RNA polymerase II RPB140, partial [Microglossum viride]
          Length = 938

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 342/966 (35%), Positives = 484/966 (50%), Gaps = 118/966 (12%)

Query: 201  AEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSE-NKRNRLIVRLVDM--SKFEDIKG 252
            +EKV +AQE+     + V      +   +    +S   K +RLI  L     SK ++ +G
Sbjct: 1    SEKVLIAQERSAANIVQVFKKPPPSPTPFVAEIRSALEKGSRLISSLTIKLHSKGDNQRG 60

Query: 253  --GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA-- 307
              G  V S   ++  +IPI I+F ALGV SD++I+N I +   D  +L +L   I +A  
Sbjct: 61   SFGSTVKSTLPYIKADIPIGIVFRALGVVSDEDILNHICYDRNDTQMLEMLKPCIEEAFV 120

Query: 308  ----DNKCDEFRKGRNALKYV-DKLIKGTTFPPGESTEECMNTYLFPSLH----GTKQKA 358
                +   D   K  NA+    DK IK           + M   L P +        +KA
Sbjct: 121  IQDREVALDYIGKRGNAMGLTRDKRIK--------YARDIMQKELLPHISQKEGSETRKA 172

Query: 359  RFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRD 418
             FLGYMV  LLQ   GRR+ D+RD F  KRL+LAG LL +  +       + + K  QR 
Sbjct: 173  FFLGYMVHKLLQCALGRRETDDRDHFGKKRLDLAGPLLAKLFRNLFKKLTQDLFKYTQRC 232

Query: 419  LYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVD 478
            +   +   P    + ++ LT GL  + +TG W    K     +G+   L R     TL  
Sbjct: 233  VENRKEFNP-ALGIKSTTLTAGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSH 291

Query: 479  LRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPI 537
            LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   V+  +  +PI
Sbjct: 292  LRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVTVGTPSDPI 351

Query: 538  FEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVE 597
             E +    ME L +          KVFV+G W+GV +D    V  +R  RR   +  +V 
Sbjct: 352  VEFMIQRSMEVLEEYEPLRSPNATKVFVNGVWVGVHRDPAHLVQTVRDLRRSHHISYEVS 411

Query: 598  IKRDELQSEVRIFMDAGRILRPLLVVEN-------------MGKIKSLEGKN-------- 636
            + RD    E +IF DAGR+ RPL V++N              G IK LE           
Sbjct: 412  LIRDIRDREFKIFTDAGRVCRPLFVIDNDVSSKNKGNLVLNKGHIKRLEDDATLPLGLDL 471

Query: 637  --------YTFQALLDHGIIELVGTEEEE---------DCCTAWGIKYLLKDIED----- 674
                    + FQ L+D G++E V  EEEE         D   +  ++   +  ED     
Sbjct: 472  EEKQERGYFGFQGLIDEGVVEYVDAEEEETVMIVMTPEDLEISRQLQAGYQIQEDNSGEL 531

Query: 675  ----KKPIK-----FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPT 725
                K P+K     +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   
Sbjct: 532  NRRVKAPMKPTAHIWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS-AMGKQAMGVFL 590

Query: 726  TNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHL 785
            TN   R+DT+++ L+YPQ+PL  T   +            L   EL  GQNAIVA+  + 
Sbjct: 591  TNFDQRMDTMANILYYPQKPLATTRSME-----------YLKFRELPAGQNAIVAILCYS 639

Query: 786  GYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRV 845
            GYNQEDS++MN++S++RG+FRS   RSY  +     M V  +      N   ++ K G  
Sbjct: 640  GYNQEDSVIMNQSSIDRGLFRSLFFRSYTDQEKRIGMNVVEQFEKPFRN-DTLKLKHGTY 698

Query: 846  DSLDDDGFPFIGANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQ 890
            D LDDDG    G  +   DI+IGK A                S  D S  L+ TE G+V 
Sbjct: 699  DKLDDDGLVAPGVRVSGEDIIIGKTAPIAPDNEELGQRTKAHSKRDASTPLRSTENGIVD 758

Query: 891  KVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDI 950
            +V++++N +G  F  V +R  + P +GDKF+S HGQKG +G +  QE+ PFT +GIVPD+
Sbjct: 759  QVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGIIYRQEDMPFTREGIVPDL 818

Query: 951  VINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGF 1010
            +INPHA PSR T   L+E  L K +A+L     SG +  ATPF   +VD +++ L   G+
Sbjct: 819  IINPHAIPSRMTIAHLIECQLSK-VASL-----SGYEGDATPFTDVTVDNVSKLLREHGY 872

Query: 1011 SKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKR 1070
               G E +Y G TG  + + +F+GPT+YQRL HM +DK+  R  GPV  LTRQPV  R R
Sbjct: 873  QSRGFEIMYHGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRAR 932

Query: 1071 FGGIKF 1076
             GG++F
Sbjct: 933  DGGLRF 938


>gi|296809049|ref|XP_002844863.1| DNA-directed RNA polymerase III subunit RPC2 [Arthroderma otae CBS
            113480]
 gi|238844346|gb|EEQ34008.1| DNA-directed RNA polymerase III subunit RPC2 [Arthroderma otae CBS
            113480]
          Length = 1211

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 374/1216 (30%), Positives = 565/1216 (46%), Gaps = 179/1216 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN F++  L+K   S  E  +    DP            ++F  +
Sbjct: 94   AFLKVKGLVKQHIDSYNYFVEVQLKKIVQSSAE--IRSDIDPK---------FYIKFHDI 142

Query: 92   TLDKPSFF-AGNGGDEHD--MFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGR 148
             L  P        G + D  + P   RL++MTY++ + V  ++ V  ++RV  +      
Sbjct: 143  YLGTPRRTDEEQSGIKVDSTITPNECRLRDMTYAAPILVDFEY-VRGRQRVKRN------ 195

Query: 149  EQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAE 202
                             IGR+PVM++S  C +            +C  D GGYFI+ G E
Sbjct: 196  --------------GTAIGRMPVMLRSSKCVLSNKSAREMYTLHECPLDPGGYFIVNGTE 241

Query: 203  KVFVAQEQICLKRLWVSNSMGWTVAYKS------ENKRNRLIVRLVDMSKFEDIKGGEKV 256
            KV + QEQ+   R+ V       +   S      E K    I+          +K G   
Sbjct: 242  KVILVQEQLSKNRVIVETDSKKEIVQASVTSSSHERKSKSYII----------MKKGRIY 291

Query: 257  LSVYFLSTEIPIWILFFALGVSSDKEIVNLI---DFTCEDCSILNILFASIHDADNKCDE 313
            L    L+ +IPI IL  A+G+ SDKE++ L+   D   ++   +N   A       K   
Sbjct: 292  LRHNVLNDDIPIVILLKAMGIQSDKEMLLLVAGVDLEYQEDFAINFEEAI------KLGI 345

Query: 314  FRKGRNALKYVDKLIK----GTTFPPG---------ESTEECMNTYLFPSLHGTKQKARF 360
            F + + AL+Y+   IK     + F P          E+    + +++       + KA +
Sbjct: 346  FTQ-QQALEYLGARIKINRKASGFGPARRNYVAEAIEAISSVIISHVQVQDMNFRPKALY 404

Query: 361  LGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLER-----------ELKVHIAHARK 409
            + YM + +L A       D+RD   NKRLELAG+LL             ++K++I    K
Sbjct: 405  VTYMARRVLMAKLDPSLVDDRDYVGNKRLELAGQLLALLFEDLFKKFCFDIKMNIDKVLK 464

Query: 410  RMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGR 469
            +  +    D Y      P+   +  + +T G++RA +TG WS    R ER +G+   L R
Sbjct: 465  KPVRTEAFDAY------PV-VAIHGNHITQGMNRAIATGNWSLKRFRMER-AGVTHVLSR 516

Query: 470  ANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGL 528
             + +  L  + R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL + T +
Sbjct: 517  LSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHI 576

Query: 529  VSTSILEPIFEQLFNSGMEKLADDASYSLGGK-------FKVFVDGDWIGVCKDSLSFVS 581
             +    EP+ + +F  G E +      ++GG+       + VF++G  I + +    F++
Sbjct: 577  TTNDEEEPVQKLVFTLGAEDIQ-----TVGGRECFGQGAYIVFMNGSPIALTRRPKYFLN 631

Query: 582  ELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE------NMGKIKSLEGK 635
              RR RR   +   V +  +  Q  V +  D GRI RPL++VE          + +L   
Sbjct: 632  AFRRLRRMGRISEFVSVFINHNQKSVHVSTDDGRICRPLIIVEKKRSKVTARHLSALRSG 691

Query: 636  NYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSC 695
               F   L +G++E V   EE D   A          E +     TH E++   +LG   
Sbjct: 692  TMDFDDFLSNGLVEYVDVNEENDANIAV--------YEREIDANTTHLEIEPFTVLGAVA 743

Query: 696  GIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCL 755
            G+IP+ +H+ + R  YQ      QAIG    N  +R+D+L + + YPQ+P+ +T   +  
Sbjct: 744  GLIPYPHHNQSPRNTYQC-AMGKQAIGAIANNQFLRIDSLLYAMVYPQKPMVKTRTIE-- 800

Query: 756  GKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKA 815
                     +    +L  GQNA+VAV  + GY+ ED+LV+N+ S++RG  R +  R Y A
Sbjct: 801  ---------LTNYDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYSA 851

Query: 816  EVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD--- 872
             + +     K R        G    K G    LD+DG   +G  +  G++ I K      
Sbjct: 852  NLKSYSNGTKDRLVGPTRENGVSIRKHGL---LDNDGLAAVGEKVSPGEVYINKETPDNA 908

Query: 873  -----SGADHSIKLKHT---------ERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGD 918
                 +G+D  + +K+          +   + KV++S+ +       V  RQ R P +GD
Sbjct: 909  LSSGITGSDAGLPVKYNPTPQTYKLPDYSYIDKVMISTTEGESQLIKVQTRQTRRPEVGD 968

Query: 919  KFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAL 978
            KFSS HGQKGV+G +  Q + PFT  G+VPDI++NPH FPSR T G++LE   GK     
Sbjct: 969  KFSSRHGQKGVVGIIAEQADMPFTDTGLVPDIIMNPHGFPSRMTVGKMLELVAGKA---- 1024

Query: 979  GKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFY 1038
              GI SG   Y TPF    V+ ++  L   GFS  G + L  G TGE +   +F GP +Y
Sbjct: 1025 --GIISGQFGYGTPFGGSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLTYYVFTGPIYY 1082

Query: 1039 QRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLF 1098
            Q+L HM +DK+  R  GP   LTRQP   R R GG++ GEMERDCLIA+G +  L ERL 
Sbjct: 1083 QKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLM 1142

Query: 1099 TLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQE 1158
              SD +++ +C  C             G      +C+ C +   +VK  +PY AKLL QE
Sbjct: 1143 ISSDRHEVDVCEGC-------------GFMGYSGWCQRCKTSAGVVKMVIPYAAKLLVQE 1189

Query: 1159 LFSMGIT--LKFDTEF 1172
            LFSM +   L+   EF
Sbjct: 1190 LFSMNVVARLRLQDEF 1205


>gi|290990263|ref|XP_002677756.1| predicted protein [Naegleria gruberi]
 gi|284091365|gb|EFC45012.1| predicted protein [Naegleria gruberi]
          Length = 1120

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 366/1205 (30%), Positives = 579/1205 (48%), Gaps = 170/1205 (14%)

Query: 38   GLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPS 97
            GL    I+S+N FI   ++K   +   +++ P  D             +++  + + KP 
Sbjct: 5    GLFRQHIDSFNYFINVDIKKIVQA--NSMITPDTDDK---------FYIKYNDIYIAKPR 53

Query: 98   FFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQF-QVYTQKRVTSDKFKTGREQYIQKEV 156
                 G D  ++ P+  RL+++TYS+ + V V++ Q+             G E  I+ E 
Sbjct: 54   L--DEGTDTIELTPQLCRLRDLTYSADIIVSVEYPQI------------VGNETLIKHED 99

Query: 157  LSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQ 210
            LS       IGR+P+M++ D C + G       + G+C  D GGYFI+KG EKV + QEQ
Sbjct: 100  LS-------IGRMPIMLQCDRCVLCGKDDKELAKLGECPLDPGGYFIVKGVEKVCLIQEQ 152

Query: 211  ICLKRLWV----SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEI 266
            +   R+ +       +  +V   +  ++++  + ++   +F         L     + +I
Sbjct: 153  LSKNRVIIDLDKEKQITASVTGSTHYRKSKTNI-IIKHERF--------YLDHNSFTKDI 203

Query: 267  PIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG----RNALK 322
            PI +LF A+G+ SD+EIV LI     D   ++ L  S  +        R+G      A++
Sbjct: 204  PIIMLFKAMGIESDQEIVQLIG---SDRKYIDALGPSFEEC------IREGVYTSEQAIE 254

Query: 323  YVDKLIKGTTF----PPGESTEECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSG 374
            Y+ + +K   F    P  E T E ++  +   +       K K  +L  MVK ++ A   
Sbjct: 255  YMSRYLKLADFRKNKPKMEETREILSNIILCHIPVYKFNYKMKIVYLAIMVKRMIDALHD 314

Query: 375  RRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR----PIE- 429
                D++D + NKRLE+AG+LL    +         + K L++   G R+ R    P E 
Sbjct: 315  SANIDDKDYYGNKRLEMAGQLLSLLFEDLFKKFNDEIKKTLEKKT-GRRSRRATSTPTED 373

Query: 430  ----YYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQ 485
                +  ++S +T GL  + S+G W+    + ER +G+   L R + +  L  + R   Q
Sbjct: 374  ISSIFNANSSKITEGLKNSISSGNWNVQRFKMER-AGVTHVLSRLSFIAALGMMTRISSQ 432

Query: 486  VQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNS 544
             + T KV   R   PS WG +C   TP+GE CGLVKNL +   V+T   E PI    +N 
Sbjct: 433  FEKTRKVSGPRALQPSQWGLLCPSDTPEGEGCGLVKNLALLTHVTTDDEEEPIIRLAYNI 492

Query: 545  GMEKLADDASYSLG--GKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
            G+E +   +   L     + VF++G  +G+ +    F    R  RR  ++   V I +++
Sbjct: 493  GVEDINLISGEELNHPSSYVVFLNGLILGIHRFPSQFTKLFRMMRRAGKIHEFVSIFKND 552

Query: 603  LQSEVRIFMDAGRILRPLLVVENMG------KIKSLEGKNYTFQALLDHGIIELVGTEEE 656
            L   + I  D GR+ RPL++VEN         +  L     T+   L  G+IE +   EE
Sbjct: 553  LHKAIYIASDGGRVCRPLIIVENQKLKVTQKHLSELAEGIRTWDDFLKEGLIEYLDVNEE 612

Query: 657  EDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKH 716
             +      I +  +DI+    ++ TH E++   +LG+  G++P+ +H+ + R  YQ    
Sbjct: 613  NNS----NIVFREEDIK----LETTHFEIEPFTILGVCAGLVPYPHHNQSPRNTYQCA-M 663

Query: 717  SSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQN 776
              QA+G    N   R+DTL   + YPQ+P+ +T   +           ++   +L  GQN
Sbjct: 664  GKQAMGAIAYNQFNRLDTLLLLMVYPQKPMVKTKTIE-----------LIQFEKLSGGQN 712

Query: 777  AIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVK--------RRS 828
            A +AV  + GY+ ED++V+N+AS++RG  R  +++ Y  E+      V+         + 
Sbjct: 713  ASIAVMSYSGYDIEDAVVVNKASIDRGYGRCIYLKKYVTELKRYHNGVEDVLQPPPNAQQ 772

Query: 829  SDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKY------------------ 870
            + DM      Q ++     LD DG   +G  +   D+ I ++                  
Sbjct: 773  AKDMD-----QKRLKSYQRLDFDGMCAVGERIYPNDMYINRFVAQNTQDNLLGMNTPTPS 827

Query: 871  ------ADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSV-VSLRQVRSPCLGDKFSSM 923
                  A++     I  K      V +V+++ N D   +++   LRQ R P LGDKFSS 
Sbjct: 828  SSNGAAANTYKPSPIFYKGPCSVYVDQVLITPNYDRGGYALKYLLRQTRRPELGDKFSSR 887

Query: 924  HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGIC 983
            HGQKGV G +  Q++ PF  QGI PD+++NPH FPSR T G+++E   GK       G+ 
Sbjct: 888  HGQKGVCGLIVDQQDMPFNEQGICPDMIMNPHGFPSRMTVGKMIELICGKS------GVL 941

Query: 984  SGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIH 1043
            +G + Y T F    V+ I + L R GFS  G + L  G TGE +   I+ GP FYQRL H
Sbjct: 942  NGKQGYGTAFGGDKVEDIGKGLIRHGFSYSGKDLLTSGITGETMSCYIYFGPVFYQRLKH 1001

Query: 1044 MSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDS 1103
            M  DK+  R+ GPV  LTRQP+  R + GG++ GEMERDCLI +GA+A L ERL   SD 
Sbjct: 1002 MVLDKMHARSKGPVRILTRQPLEGRSKEGGLRLGEMERDCLIGYGASALLLERLMLSSDE 1061

Query: 1104 YQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMG 1163
            Y++H+C  C  +  +              YC  C S  +I    +PY  KLL QEL +M 
Sbjct: 1062 YKVHVCEDCGMIGYM-------------GYCNFCKSKQNISLLPMPYAFKLLIQELQAMN 1108

Query: 1164 ITLKF 1168
            I+ K 
Sbjct: 1109 ISPKL 1113


>gi|195381659|ref|XP_002049565.1| GJ20682 [Drosophila virilis]
 gi|194144362|gb|EDW60758.1| GJ20682 [Drosophila virilis]
          Length = 1137

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 366/1201 (30%), Positives = 567/1201 (47%), Gaps = 158/1201 (13%)

Query: 28   KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMR 87
            K   +F    GLV   I+S+N FI   ++K   +    IV  G DP        +Y  +R
Sbjct: 36   KLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVRA--NEIVTSGADPL----FYLKYLDVR 89

Query: 88   FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
             G+  +D   F        H+      RL++ TYS+ + V +++   TQ+          
Sbjct: 90   VGKPDIDD-GFNITKATTPHE-----CRLRDTTYSAPISVDIEYTRGTQR---------- 133

Query: 148  REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGA 201
                I++        N++IGR+P+M++   C + G  +       +C  D GGYF+++G 
Sbjct: 134  ----IKR-------NNLLIGRMPLMLRCSNCVLTGKSEFELSKLNECPLDPGGYFVVRGQ 182

Query: 202  EKVFVAQEQICLKRLWVSNSMGWT---VAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLS 258
            EKV + QEQ+   ++   +  G     V   +  K++R +V    +SK      G+  L 
Sbjct: 183  EKVILIQEQLSWNKMLTEDFNGVVQCQVTSSTHEKKSRTLV----LSKH-----GKYYLK 233

Query: 259  VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGR 318
               ++ +IPI ++F ALGV SD+EI++ I     D    N   AS+ +A N    F + R
Sbjct: 234  HNSMTDDIPIVVIFKALGVVSDQEIMSHIGL---DARSQNRFGASLLEAFN-LKVFTQQR 289

Query: 319  NALKY------VDKLIKGTTFPPGESTEECMNTYLFPSL----HGTKQKARFLGYMVKCL 368
             AL Y      V +    T   P E   E + T +   +       + KA ++  MV+ +
Sbjct: 290  -ALDYMGSKLVVKRFQSATNKTPSEEARELLLTTILAHVPVDNFNFQMKAIYVSLMVRRV 348

Query: 369  LQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPI 428
            + A   +   D+RD + NKRLELAG L+     +      KRM   L+  +  D+ +  +
Sbjct: 349  MAAELDKTLFDDRDYYGNKRLELAGSLIS----LMFEDLFKRMNWELK--MIADKNIPKV 402

Query: 429  EY-------YLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRR 481
            +        ++ A+ +T GL  A S+G W+    + ER +G+   L R + +  L  + R
Sbjct: 403  KAAQFDVVKHMRAAQITVGLESAISSGNWTIKRFKMER-AGVTQVLSRLSYISALGMMTR 461

Query: 482  TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQ 540
               Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + E P+   
Sbjct: 462  VNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVDERPVMTL 521

Query: 541  LFNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEI 598
             +N+G+E + + +   +     F VF++G+ +G+  +    V  LR  RR+  + + V I
Sbjct: 522  AYNAGVEDIREVSGNPINNPHVFLVFINGNVLGLTINHRHLVHNLRYMRRKGRMGSFVSI 581

Query: 599  KRDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNY---------TFQALLDHGIIE 649
                 Q  + I  D GR+ RP ++VE   K + L  + +          F   L  G+IE
Sbjct: 582  HTSYTQRCIFIHTDGGRLCRPYIIVE---KSRPLVQQRHLDELLRGVRKFDDFLHDGLIE 638

Query: 650  LVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRV 709
             +   EE D   AW         E+      TH E++   LLG+  G++P+ +H+ + R 
Sbjct: 639  YLDVNEENDSFIAWN--------EEHIEPHTTHLEIEPFTLLGVCAGLVPYPHHNQSPRN 690

Query: 710  LYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRP 769
             YQ      QA+G    N   R+D+L + L YPQ P+ ++   +           +    
Sbjct: 691  TYQCAM-GKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVKSRTIE-----------LTNFD 738

Query: 770  ELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRR-- 827
            +L  GQNA VAV  + GY+ ED+L++N+AS++RG  R    ++ K  V     Q   R  
Sbjct: 739  KLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIM 798

Query: 828  --SSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHS------- 878
                D + N       I + D LD DG    G  + +  I+I K   +    +       
Sbjct: 799  GPVKDALTN-----KVIFKHDVLDTDGIVAPGEQVLNKQIMINKEMPAVTSINPLEGQSA 853

Query: 879  --------IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVL 930
                    I  K  E   +++V++S+N +      + LRQ R P +GDKFSS HGQKGV 
Sbjct: 854  QVPYTAVPISYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVT 913

Query: 931  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYA 990
            G +  QE+ PF   GI PD+++NPH FPSR T G+ LE   GK       G+  G   Y 
Sbjct: 914  GLIVDQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKA------GVLEGKFHYG 967

Query: 991  TPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVK 1050
            T F       +  +L R GF+  G +  Y G TG  + + I+ GP +YQ+L HM +DK+ 
Sbjct: 968  TAFGGSKAADVQAELVRHGFNYMGKDLFYSGITGAPLEAYIYSGPVYYQKLKHMVQDKMH 1027

Query: 1051 FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICR 1110
             R  GP   LTRQP   R R GG++ GEMERDCLI++GA+  + ERL   SD++++ +CR
Sbjct: 1028 ARARGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCR 1087

Query: 1111 KCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
             C             GR     +C  C S   + K ++PY  KLL QEL SM +  K   
Sbjct: 1088 TC-------------GRLAYCSWCHFCQSSAHVSKISMPYACKLLFQELTSMNVVPKLIL 1134

Query: 1171 E 1171
            E
Sbjct: 1135 E 1135


>gi|390596427|gb|EIN05829.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Punctularia strigosozonata HHB-11173 SS5]
          Length = 1143

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 363/1196 (30%), Positives = 556/1196 (46%), Gaps = 150/1196 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETI--VEPGYDPSKKGEGEWRYASMRFG 89
            +F    GLV   I+S+N F+   ++    +  +    V+P +         W    +++ 
Sbjct: 40   AFLKVKGLVKQHIDSFNYFVDVDIKNILKANNKVTSDVDPRF---------W----LKYT 86

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
             + +  P     +  D+  + P   RL++ TYS+ + V +Q   YT+ +    +      
Sbjct: 87   DIHVGFPDRTDADAIDK-SVTPHECRLRDTTYSAPILVTIQ---YTRGKSVVRR------ 136

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG------DCDFDHGGYFIIKGAEK 203
                         N+ IGRIP+M++S+ C + G  +       +C  D GGYF++KG EK
Sbjct: 137  ------------PNVSIGRIPIMLRSNKCVLTGRNEAQLARMLECPLDPGGYFVVKGTEK 184

Query: 204  VFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLS 263
            V + QEQ+   R+ V       V   S        ++      +   K G+  L    + 
Sbjct: 185  VILVQEQLSKNRIIVETDPVKDVVQASCTSSTHGGLK---SKTYVATKKGKIYLRHNSIH 241

Query: 264  TEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKY 323
             ++PI I   ALG  +DKEI+ L   T  +  +    F+   +   K   F +   AL+Y
Sbjct: 242  EDVPIVIALKALGFQADKEILLL---TAGNSEVYKSAFSPNLEEAAKLGVFTR-HQALEY 297

Query: 324  VDKLIK------GTTFPPGESTEECMNTYLFPSLHGT----KQKARFLGYMVKCLLQAYS 373
            +   +K      G   P  E   E + T +   +       + KA F+  M + +L A +
Sbjct: 298  IGSRVKVNRRVIGPRRPAWEEAMEALATIVLAHVPVNGLDFRPKAIFVATMTRRVLMAMA 357

Query: 374  GRRKCDNRDDFRNKRLELAGELL-----------ERELKVHIAHARKRMAKALQRDLYGD 422
              +  D+RD   NKRLELAG+LL              LK  I    K+ ++  + D +  
Sbjct: 358  DEKMVDDRDYVGNKRLELAGQLLALLFEDLFKTFNSNLKSAIDKVLKKPSRTNEFDAWNT 417

Query: 423  RTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
                 +++  D   +T+G  RA STG WS    + ER +G+   L R + +  L  + R 
Sbjct: 418  -----MQFMGDH--ITSGFVRAISTGNWSLKRFKMER-AGVTHVLSRLSFISALGMMTRI 469

Query: 483  RQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQL 541
              Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + E PI    
Sbjct: 470  SSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVEEEPIIRIA 529

Query: 542  FNSGMEK--LADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIK 599
            +  G+E   LA  A       F V V+G  IG+ +    FVS  R+ RR       V I 
Sbjct: 530  YLLGVEDICLASGAEVYGPHTFVVHVNGTIIGLTRYPARFVSNFRKLRRAGRFSEFVSIY 589

Query: 600  RDELQSEVRIFMDAGRILRPLLVVENM------GKIKSLEGKNYTFQALLDHGIIELVGT 653
             +   S V I  D GRI RP+++VEN         I  L+     F   L  G++E +  
Sbjct: 590  VNHHHSTVHIATDGGRICRPMIIVENQRPRVTSDHILLLKKGQVNFDDFLKKGLVEYLDV 649

Query: 654  EEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQS 713
             EE D   A     ++           TH E++   +LG   G+IP+ +H+ + R  YQ 
Sbjct: 650  NEENDSYIALYEANIVSST--------THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQC 701

Query: 714  Q--KHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPEL 771
               K +  AIGF   N   R++TL +   YPQ+P+ +T   + +G             +L
Sbjct: 702  AMGKQAIGAIGFNQLN---RIETLLYLHCYPQQPMVKTKTIELIG-----------YDKL 747

Query: 772  YNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDD 831
              GQNA VAV  + GY+ ED+L++N+ASL+RG  R + +R  +  +         R +D 
Sbjct: 748  PAGQNATVAVMSYSGYDIEDALILNKASLDRGYGRCQVLRKNQTLIRKYPNGTFDRLADA 807

Query: 832  MVN-FGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHS------------ 878
             V+  G +Q K    D +  DG   +G  +  GD+ I K   + A+ +            
Sbjct: 808  PVDENGGVQKK---YDIIQMDGLAGVGERVDPGDVYINKQTPTNANDNAFVGQAASVPYK 864

Query: 879  ---IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLES 935
               +  K    G + KV+++  ++ +    V +RQ R P LGDKFSS HGQKGV G + +
Sbjct: 865  NAPMTYKSPVSGYIDKVMITDTENEQTLIKVLMRQTRRPELGDKFSSRHGQKGVCGLIVN 924

Query: 936  QENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFAT 995
            QE+ PF  QGIVPD ++NPH FPSR T G+++E   GK       G+ SG  +Y T F  
Sbjct: 925  QEDMPFNDQGIVPDSIMNPHGFPSRMTVGKMIELLAGKA------GVLSGKLQYGTAFGG 978

Query: 996  PSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTG 1055
              V+ ++  L   GF+  G + L  G TGE + + ++ GP +YQ+L HM  DK+  R  G
Sbjct: 979  SKVEDMSRILIENGFNYAGKDMLTSGITGEQMEAYVYFGPIYYQKLKHMVMDKMHARARG 1038

Query: 1056 PVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNV 1115
            P   LTRQP   R R GG++ GEMERDCLI +GA   L ERL   SD ++++ C +C   
Sbjct: 1039 PRATLTRQPTEGRSREGGLRLGEMERDCLIGYGATQLLLERLMISSDKFEVNACAEC--- 1095

Query: 1116 ANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                      G      +C  C S   + +  +PY AKLL QEL +M +  + + +
Sbjct: 1096 ----------GLMGYNGWCTYCKSSKKMAQLTIPYAAKLLFQELMAMNVVPRLELD 1141


>gi|120561275|gb|ABM27022.1| RNA polymerase II second largest subunit, partial [Neocallimastix
            frontalis]
          Length = 915

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 328/953 (34%), Positives = 497/953 (52%), Gaps = 115/953 (12%)

Query: 201  AEKVFVAQEQICLKRLWV-----SNSMGWTVAYKS-----ENKRNRLIVRLVDMSKF--- 247
            +EKV +AQE++    ++V      +   +T   +S         + L ++++  +     
Sbjct: 1    SEKVLIAQERMASNIIYVFAKTPPSPYSYTAEIRSAVESGSRHASTLYIKMLAKASTRAN 60

Query: 248  EDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA 307
             +I G     ++ ++  +IPI I+F ALGV  D++I+  I +   D  +L +L   I DA
Sbjct: 61   SEIVGQSIKATLPYVRQDIPIVIVFRALGVVPDRDILEHICYDFRDYQMLEMLKPCIEDA 120

Query: 308  DNKCDEFRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSL----HGTKQ 356
                D+      AL ++ K  +GTT   G + E       E +   L P +    H   +
Sbjct: 121  FVIQDK----EIALDFIGK--RGTTV--GVTKEKRIRYAAEILQKELLPHIGTRAHTETK 172

Query: 357  KARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQ 416
            KA F GYM+  LL A   RR+CD+RD F  KRL+LAG LL    ++      K ++K LQ
Sbjct: 173  KAYFFGYMIHRLLLAALERRECDDRDHFGKKRLDLAGPLLGSLFRMLFRKLTKDVSKTLQ 232

Query: 417  RDLYGDRTVRPIEYYLDASI----LTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANP 472
              +  +R     E+ L+++I    +++GL  + +TG W    K  +  +G+   L R   
Sbjct: 233  MCIDRNR-----EFNLNSAIRPNTISDGLKYSLATGNWGAQSKFMQSRAGVSQVLNRYTF 287

Query: 473  LQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST- 531
              TL  LRR    +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   VS  
Sbjct: 288  ASTLSHLRRLNTPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSYVSVG 347

Query: 532  SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKE 591
            S   PI E L    ME + +     +    K+FV+G W+G+ +D    V  LR  RR + 
Sbjct: 348  SSSAPIVEFLEEWTMENMEEVHVSHIIDATKIFVNGVWVGIHRDPDHLVKTLRDLRRSQN 407

Query: 592  LPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN-----------MGKIKSLEGKNYTFQ 640
            +  ++ I RD  + E++I+ DAGRI RPL +VEN           M + ++  G+ + + 
Sbjct: 408  VNAEISIVRDIREKELKIYTDAGRICRPLFIVENQKLKLKKSHIAMIQERNETGQGWGWD 467

Query: 641  ALLDHGIIELVGTEEEEDCCTAWGIKYL--------LKDIEDKKPIK--------FTHCE 684
             L+++GIIE +  EEEE        + L        ++D    K +K        +THCE
Sbjct: 468  DLIENGIIEFIDAEEEETTLICMSHEDLDPKDGEMNIQDYGTSKRLKSRSVYSRNWTHCE 527

Query: 685  LDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQR 744
            +  S +LG+   I+PF +H+ + R  YQS     QA+G   TN  +R+DT+++ L+YPQ+
Sbjct: 528  IHPSMILGICASIVPFPDHNQSPRNTYQSAM-GKQAMGIYLTNFQLRMDTMANILYYPQK 586

Query: 745  PLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGM 804
            PL  T   +            L   +L  GQNAIVA+  + GYNQEDS++MN++S++RG+
Sbjct: 587  PLVTTRAME-----------YLRFRDLPAGQNAIVAIACYSGYNQEDSIIMNQSSIDRGL 635

Query: 805  FRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK------IQSKIGRVDSLDDDGFPFIGA 858
            FRS   RSY         Q K+    ++ NF K      ++ + G  + L+DDG    G 
Sbjct: 636  FRSLFYRSYMD-------QEKKVGMFNVENFEKPTRETCLRLRHGTYEKLEDDGLIAPGI 688

Query: 859  NLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNF 903
             +   DI+IGK                  +  D S  L+ TE G+V +V++++N DG  F
Sbjct: 689  RVTGDDIIIGKTIPLSQDSQELGQRTEHHTKRDASTPLRSTETGIVDRVLVTNNQDGMKF 748

Query: 904  SVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTP 963
              V +R  R P +GDKF+S HGQKG +G     E+ PFT  GI PDI+INPHA PSR T 
Sbjct: 749  VKVRVRSTRIPQMGDKFASRHGQKGTVGMTYRTEDMPFTFNGITPDIIINPHAIPSRMTI 808

Query: 964  GQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRT 1023
            G L+E  LGK ++ L     +G +  ATPF   +V+AI++ L   GF   G E +++G T
Sbjct: 809  GHLVECLLGK-VSTL-----TGDEGDATPFTDVTVEAISKLLRENGFQSRGFEVMFNGHT 862

Query: 1024 GEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKF 1076
            G+ +++ IF+GPT+YQRL HM +DK+  R  GPV  LTRQPV  R R GG++F
Sbjct: 863  GKKLQAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 915


>gi|145341844|ref|XP_001416013.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576236|gb|ABO94305.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1146

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 367/1210 (30%), Positives = 576/1210 (47%), Gaps = 168/1210 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+S+N  +   ++K   +     V    DP+       +Y ++  G+ 
Sbjct: 27   AFLKVRGLVRQHIDSFNYLVNEEIKKIIHAKANERVTCDSDPNFY----LKYTNIHVGRP 82

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQ-KRVTSDKFKTGREQ 150
            ++++            ++ P+  RL++MTY++ + V V+   YT+ K + + + K G   
Sbjct: 83   SVEEDYVV-------EEITPQQCRLRDMTYAAPITVDVE---YTRGKEIVTRQAKNG--- 129

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKV 204
                         ++IGRIP+M++S  C + G  +      G+C  D GGYFI+KG EKV
Sbjct: 130  ----------VGGVVIGRIPLMLRSSRCVLTGKNEDELARLGECPLDPGGYFIVKGVEKV 179

Query: 205  FVAQEQICLKRLWVS----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVY 260
             + QEQ+   R+ +       +G +V   +  ++++  +          +K G+  L   
Sbjct: 180  ILIQEQLSKNRIIIEVDAKGEIGASVTSSTHERKSKTNIV---------VKHGKFYLRHN 230

Query: 261  FLSTEIPIWILFFALGVSSDKEIVNLIDF----------TCEDCSILNILFA--SIHDAD 308
              + +IPI I+  A+G+ SD+E V +I            T ++C    +     ++    
Sbjct: 231  TFADDIPIMIVLKAMGLESDQEAVQMIGSEPAYAMLLGPTLQECQAAGVFTTQQALEYCA 290

Query: 309  NKCDEFRK-----------GRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQK 357
            NK    +            GR+ +     ++ G        T     +Y F      +QK
Sbjct: 291  NKVRVVKTHMTNRPGVRNFGRSRVDEARDILAGVVLAHVPVT-----SYDF------RQK 339

Query: 358  ARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQR 417
              ++  MV+ +L A     + D++D + NKRLELAG+L+     +      KR+   L+R
Sbjct: 340  CAYISIMVRRILNAMLDPTQIDDKDYYGNKRLELAGQLI----ALLFEDCFKRLNADLKR 395

Query: 418  --DLYGDRTVRPIEYYLDASI----LTNGLSRAFSTGAWSHPFKRTERISGIVANLGRAN 471
              D    +  R  ++ +   I    L+NGL  A S+G W+    R ER  G+   L R +
Sbjct: 396  QADAVLSKANRATQFDILKCIRQDTLSNGLEHAISSGNWTVKRFRMER-KGVTQVLSRLS 454

Query: 472  PLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST 531
             +  L  + R   Q + T KV   R   PS WG +C   TP+GE+CGLVKNL +   V+T
Sbjct: 455  FISALGMMTRITSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGESCGLVKNLALMTHVTT 514

Query: 532  SILEPIFEQLFNS-GMEKLA---DDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKR 587
               E    +L ++ G+E L        +S  G   V ++G  +GV     +F    R+ R
Sbjct: 515  DDEEEPLRRLAHALGVEPLTWLNAGEMHSPSGAH-VLMNGSLLGVHAQPEAFSHAFRKLR 573

Query: 588  RRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE------NMGKIKSLEGKNYTFQA 641
            R   +   V +   +    V I  D GR+ RPL+++E          +  L+  + TF  
Sbjct: 574  RAGRIGEFVSVYTAD--GCVYISSDGGRVCRPLIIIERGEPLLTQEHLDELKDGHRTFND 631

Query: 642  LLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFA 701
             L  G++E +   EE +   A          ED+   + TH E++   LLG+  GIIP+ 
Sbjct: 632  FLREGLVEYLDVNEENNSYIAL--------YEDEVNDETTHLEIEPFTLLGVCAGIIPYP 683

Query: 702  NHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYG 761
            +H+ + R  YQ      QA+G    N   R+DTL + L YPQ+P+ +T   + +G    G
Sbjct: 684  HHNQSPRNTYQCAM-GKQAMGNIAFNQLNRMDTLMYLLVYPQKPIVKTKTIELIGYDRLG 742

Query: 762  HNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEV---D 818
                        GQNA +AV  + GY+ ED++VMNRASL+RG  R   +R Y A+V    
Sbjct: 743  -----------AGQNATIAVMSYSGYDIEDAIVMNRASLDRGFGRCTVLRKYSAQVKKYS 791

Query: 819  NKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHS 878
            N+ M       DD        ++  R   LDDDG   +G  ++ GDI + K         
Sbjct: 792  NRTMDRIVGPKDD-----HRANQNSRHHLLDDDGIAAVGGRIKPGDIYVNKQTPVNTRDP 846

Query: 879  IKLKHT------------------ERGMVQKVVLSSNDDGKNFSVVSL-RQVRSPCLGDK 919
            +   H                   E  +V KV+L+  D+G+ F++ +L RQ R P +GDK
Sbjct: 847  MANPHAMPDTMYRSNPLSYKGPAGESAIVDKVLLTMTDEGQ-FNIKTLVRQTRRPEVGDK 905

Query: 920  FSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALG 979
            FSS HGQKGV G +  QE+FPF+ +GI PD+++NPH FPSR T G+++E   GK      
Sbjct: 906  FSSRHGQKGVCGIILDQEDFPFSERGITPDLIMNPHGFPSRMTVGKMIELLGGKA----- 960

Query: 980  KGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQ 1039
             G+ SG     T F   +V+AI + L  +G+S  G + L+ G TGE +   +F+GP +YQ
Sbjct: 961  -GLESGRFHDGTAFGGDTVEAIQQTLVESGYSYKGKDMLHCGITGEALEVNVFMGPVYYQ 1019

Query: 1040 RLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFT 1099
            +L HM +DK+  R  GP   LTRQP   R R GG++ GEMERDCLI +GA+  + ERL  
Sbjct: 1020 KLKHMVQDKMHARARGPRVVLTRQPTEGRARDGGLRLGEMERDCLIGYGASQLILERLMI 1079

Query: 1100 LSDSYQMHICRKCKNVANVIQRVVGGGRKV-RGPYCRICDSGDDIVKANVPYGAKLLCQE 1158
             SD ++  +C KC         ++G    + R   C +C +  ++    +PY  KLL QE
Sbjct: 1080 SSDQFEAQVCTKCG--------LLGFQHHITRRNACTLCKTEAEVATLKLPYACKLLFQE 1131

Query: 1159 LFSMGITLKF 1168
            L SM I  + 
Sbjct: 1132 LQSMNIAPRL 1141


>gi|340376544|ref|XP_003386792.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Amphimedon
            queenslandica]
          Length = 1131

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 368/1203 (30%), Positives = 572/1203 (47%), Gaps = 156/1203 (12%)

Query: 28   KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMR 87
            K   +F    GLV   ++S+N F+   ++K   +    +V   +DPS       +Y  + 
Sbjct: 27   KLLPAFLKVKGLVKQHLDSFNYFVSTDIKKIVRA--NDLVISDFDPS----FYLKYLDIY 80

Query: 88   FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
             G   +++             + P+  RL++MTYS+ + V +++   TQ RV    F   
Sbjct: 81   VGTPLVEESLNVCTQ------ITPQECRLRDMTYSAPVTVDIEYTRGTQ-RVRRKGFS-- 131

Query: 148  REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGA 201
                              IG++P+M++S  C +    +       +C  D GGYF+++G 
Sbjct: 132  ------------------IGQLPIMLRSANCVLSNKNQEELAKLKECPIDPGGYFVVRGT 173

Query: 202  EKVFVAQEQICLKRLWVS----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVL 257
            EKV + QEQ+   R+ V      ++G +V   + +++++    L+        KG +  L
Sbjct: 174  EKVILIQEQLSKNRIIVDYDKKGNIGCSVTSSTHDRKSK--TNLI-------FKGNQFYL 224

Query: 258  SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG 317
                 + +IP+ ++F A+ + SD+EIV +I   CED S+L++   S+ +           
Sbjct: 225  KHNSFTDDIPVVLVFKAMNIISDQEIVQMIG--CED-SVLSVFAPSLEEC--AMLNVYTQ 279

Query: 318  RNALKYVD----KLIKGTTFPPGESTEECMNTYLFPSL----HGTKQKARFLGYMVKCLL 369
            + AL+ V     K + G      E   + ++ Y+   +    +  K KA FL  M++ ++
Sbjct: 280  KKALEVVGAKTRKRMYGKPRSKAEEAHDVLSHYVLAHIPVESNDFKIKASFLSLMIRRVI 339

Query: 370  QAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIE 429
             A + + + D+RD + NKRLELAG LL    +         + K + R L   RT +P +
Sbjct: 340  LA-TAKDEVDDRDYYGNKRLELAGPLLSLLFEDLFKRYNSELKKIIDRTLAKKRT-QPFD 397

Query: 430  Y--YLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQ 487
               ++  SI+T G+  A STG W+    + ER  G+   L R + +  L  + R   Q +
Sbjct: 398  VVCHMKNSIITQGIETALSTGNWTLRRFKMER-GGVTQVLSRMSFIACLGHMTRITSQFE 456

Query: 488  YTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGM 546
             T K+   R   PS WG +C   TP+GE CGLVKNL +   ++T + E PI    FN G+
Sbjct: 457  KTRKISGPRSLQPSQWGMVCPSDTPEGEACGLVKNLALISHITTDVDEGPIRRLAFNLGV 516

Query: 547  EKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQ 604
            E +   +   L     + V ++G+ +GV +   SFV   R  RR   +   V I  +   
Sbjct: 517  EDIRYLSGEELSSNESYLVLLNGNIVGVVRYYASFVRYFRLLRRNGRMNEFVSISTNHHN 576

Query: 605  SEVRIFMDAGRILRPLLVVEN-MGKIKS----LEGKNYTFQALLDHGIIELVGTEEEEDC 659
              V I  D+GR+ RP ++V N + ++ S    L  K   F+  L  G+IE +   EE D 
Sbjct: 577  RTVSISSDSGRVCRPYIIVINGVPRVTSHHIDLISKGMEFEDFLAKGLIEYLDVNEENDS 636

Query: 660  CTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQ 719
              A        DI        TH E++   +LG+  G+IP+ +H+ + R  YQ      Q
Sbjct: 637  MIAL----YESDINSST----THLEIEPFTILGVCAGLIPYPHHNQSPRNTYQC-AMGKQ 687

Query: 720  AIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIV 779
            AIG    N   R+DTL + + YPQ P+ +T   D           ++   +L  G NA+V
Sbjct: 688  AIGTIAYNQQNRIDTLLNIMIYPQAPIVKTRTID-----------LIKFDKLPAGFNAVV 736

Query: 780  AVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQ 839
            A+  + GY+ ED+L++NRASL+RG+ RS   R        +   +KR S+   + F KI 
Sbjct: 737  AIMCYSGYDIEDALILNRASLDRGLARSLVCR-------KQTCSLKRYSN---MTFDKIL 786

Query: 840  SKIGRVDS---------LDDDGFPFIGANLQSGDIVIGKYADS---------------GA 875
                 +D+         LD+DG   +   + SG ++I K                   GA
Sbjct: 787  GPSREMDTGKPIWKHTPLDEDGIVGVAERVSSGQVLINKLVPQVTQSLCPGGGGAAAGGA 846

Query: 876  DHSIK-LKHTERG----MVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVL 930
            D++ K    + RG        V++++N++      + L  +R P +GDKFSS HGQKGV 
Sbjct: 847  DNNYKSCPVSYRGPTDVYANNVLITNNNEESYLIKILLESIRIPEIGDKFSSRHGQKGVC 906

Query: 931  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYA 990
            G +  QE+ PFT QG+ PDI++NPH FPSR T G+L+E   GK       G  +G  RY+
Sbjct: 907  GLIVPQEDMPFTDQGLCPDIIMNPHGFPSRMTVGKLIEVIAGK------TGALNGTYRYS 960

Query: 991  TPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVK 1050
            T F    V  I+  L   GF+  G + L  G TGE + + I+ G  +YQRL HM  DK+ 
Sbjct: 961  TAFGGDKVSDISSDLISNGFNYVGKDILTSGITGEPLEAYIYTGIVYYQRLKHMVLDKMH 1020

Query: 1051 FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICR 1110
             R+ GP   LTRQP   R R GG++ GEMERDCLI++G+   L ERL T SD + + IC 
Sbjct: 1021 ARSRGPRVILTRQPTEGRSRDGGLRLGEMERDCLISYGSCMLLRERLMTSSDEFDVQICE 1080

Query: 1111 KCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
             C             G      +C  C S   +    +PY  KLL QE+ SM I  +   
Sbjct: 1081 SC-------------GLLAYNDWCHYCQSSGSVTSIKIPYAFKLLIQEMQSMNIIPRIGL 1127

Query: 1171 EFC 1173
              C
Sbjct: 1128 SSC 1130


>gi|258571555|ref|XP_002544581.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Uncinocarpus
            reesii 1704]
 gi|237904851|gb|EEP79252.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Uncinocarpus
            reesii 1704]
          Length = 1202

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 364/1205 (30%), Positives = 562/1205 (46%), Gaps = 164/1205 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN F++  L+K   +  E  +    DP+           +RF  +
Sbjct: 82   AFLKVKGLVKQHIDSYNYFVEVQLKKIVQASAE--IRSDVDPN---------FYIRFHDI 130

Query: 92   TLDKPSFFAGNGGD------EHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
             L  P        +      E  + P   RL++MTY++ + V  ++ V  ++RV  +   
Sbjct: 131  YLGSPRRADEEQSEDTRFKVESTITPNECRLRDMTYAAPILVDFEY-VRGRQRVKRN--- 186

Query: 146  TGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIK 199
                                IGR+PVM++S  C +     G+      C  D GGYFI+ 
Sbjct: 187  -----------------GTAIGRMPVMLRSSKCVLSKKSPGEMYQLHECPLDPGGYFIVN 229

Query: 200  GAEKVFVAQEQICLKRLWVSNS-----MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGE 254
            G EKV + QEQ+   R+ V        +  +V   S  ++++  + L         K   
Sbjct: 230  GTEKVILVQEQLSKNRVIVETDPKKEIVQASVTSSSNERKSKSYIIL---------KKDR 280

Query: 255  KVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEF 314
              L    LS ++PI I+  A+G+ SDKE++ L+       S+    FA   +   K   +
Sbjct: 281  IYLRHNVLSDDVPIVIILKAMGIQSDKEMLLLVAGVD---SVYQEDFAINFEESIKLGIY 337

Query: 315  RKGRNALKYVDKLIKGTTFPPG-------------ESTEECMNTYLFPSLHGTKQKARFL 361
             + + AL+Y+   IK    P               E+    + +++       + KA ++
Sbjct: 338  TQ-QQALEYLGSHIKIMRKPNSFGGVRRNYIQEAVEAIASVIISHVQVENMNFRPKALYV 396

Query: 362  GYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLER-----------ELKVHIAHARKR 410
             +M + +L A       D+RD   NKRLELAG+LL             ++K++I    K+
Sbjct: 397  AHMARRVLMAKHDPSLVDDRDYVGNKRLELAGQLLALLFEDLFKKFCFDIKMNIDKVLKK 456

Query: 411  MAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRA 470
              +    D +    +         + +T G++RA STG WS    R ER +G+   L R 
Sbjct: 457  PVRTEAFDAFSVVAIH-------GNHITQGMNRAISTGNWSLKRFRMER-AGVTHVLSRL 508

Query: 471  NPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLV 529
            + +  L  + R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL + T + 
Sbjct: 509  SYISALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCPADTPEGEACGLVKNLALMTHIT 568

Query: 530  STSILEPIFEQLFNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVSELRRKR 587
            +    EP+ + ++  G E +         G+  + +F++G  I + +    F++  RR R
Sbjct: 569  TNDEEEPVRKLVYALGAEDVQAVGGREFYGQGAYIIFLNGSPIALTRRPKFFLNSFRRLR 628

Query: 588  RRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQA 641
            R   +   V I  +  QS + I  D GRI RPL++VE          +  L      F  
Sbjct: 629  RMGRVSEFVSIYINHHQSAMHIATDDGRICRPLIIVEKQKSRVTADHLSQLRSGEMEFDD 688

Query: 642  LLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFA 701
             L  G++E +   EE D      I    ++I +      TH E++   +LG   G+IP+ 
Sbjct: 689  FLAQGLVEYLDVNEENDSY----ISVYEREINENT----THLEIEPFTILGAVAGLIPYP 740

Query: 702  NHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYG 761
            +H+ + R  YQ      QAIG    N  +R+D+L + + YPQ+P+ +T   +        
Sbjct: 741  HHNQSPRNTYQC-AMGKQAIGAIANNQFLRIDSLLYTMVYPQKPMVKTRTIE-------- 791

Query: 762  HNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKE 821
               ++    L  GQ+A VAV  + GY+ ED+LV+N+AS++RG  R +  R Y A + +  
Sbjct: 792  ---LVKYDRLPAGQSATVAVMSYSGYDIEDALVLNKASVDRGFGRCQVFRKYSANLKSYS 848

Query: 822  MQVKRRS-SDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD-------- 872
               K R    D  N   I+        LD DG   +G  + SG++ I K           
Sbjct: 849  NGTKDRLLGPDRENGAPIRKHA----LLDSDGLAAVGEKVSSGEVYINKVTPENALSSGI 904

Query: 873  SGADHSIKL---------KHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSM 923
            +G+D    +         K  +   + KV++S+ +       V  RQ R P +GDKFSS 
Sbjct: 905  TGSDAGGPIAYIPSPQTYKLPDPSYIDKVMISTTEGENQLLKVQTRQTRRPEVGDKFSSR 964

Query: 924  HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGIC 983
            HGQKGV+G +  Q + PFT QGIVPDI++NPH FPSR T G++LE  +GK       G+ 
Sbjct: 965  HGQKGVVGIIAEQADMPFTDQGIVPDIIMNPHGFPSRMTVGKMLELVVGKA------GVL 1018

Query: 984  SGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIH 1043
            SG   Y TPF    V+ ++  L   GFS  G + L  G TGE + + +F GP +YQ+L H
Sbjct: 1019 SGQFGYGTPFGGSPVEEMSAILVSKGFSYGGKDYLTSGITGEPLPAYVFTGPIYYQKLKH 1078

Query: 1044 MSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDS 1103
            M +DK+  R  GP   LTRQP   R R GG++ GEMERDCLIA+G +  L ERL   SD 
Sbjct: 1079 MVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDR 1138

Query: 1104 YQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMG 1163
            +++ +C  C  +  +              +C+ C +   +VK  +PY AKLL QELFSM 
Sbjct: 1139 HEVDVCENCGFMGYL-------------GWCQRCKTSRGVVKMAIPYAAKLLVQELFSMN 1185

Query: 1164 ITLKF 1168
            +  +F
Sbjct: 1186 VVARF 1190


>gi|345568411|gb|EGX51305.1| hypothetical protein AOL_s00054g375 [Arthrobotrys oligospora ATCC
            24927]
          Length = 1166

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 369/1209 (30%), Positives = 558/1209 (46%), Gaps = 177/1209 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++S+N F    L++   +    + E   DP+       RY  +R G  
Sbjct: 58   AFLKVKGLVKQHLDSFNYFCDVELKQIIKANEMVVSE--VDPN----FFLRYVDIRVGLP 111

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
                      +   + D+ P   RL++MTY++ + V +Q                    Y
Sbjct: 112  ERQ-------DSDSDADITPNECRLRDMTYAAPVFVDIQ--------------------Y 144

Query: 152  IQ-KEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKV 204
            ++ K V++    NI  GR+P+M++S+ C +    +       +C  D GGYFII G EKV
Sbjct: 145  VRGKAVIARNGVNI--GRLPIMLRSNKCVLTNKSEHEMAVLKECPLDPGGYFIINGTEKV 202

Query: 205  FVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLS----VY 260
             + QEQ+   R+ V            E    + IV+    S   + K    VLS    +Y
Sbjct: 203  ILVQEQLSKNRIIV------------EADTKKQIVQASVTSSTHERKSNTYVLSKKGAIY 250

Query: 261  F----LSTEIPIWILFFALGVSSDKEIVNLIDFT-----------CEDCSILNILFASIH 305
                 +S ++PI ++  ALG+ SD EI+ ++  T            E+CS L + F    
Sbjct: 251  LRHNSVSEDVPIVLVLKALGIQSDHEILLMVAGTDSVYQDTFSVNFEECSKLGV-FTQQQ 309

Query: 306  DADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLH----GTKQKARFL 361
              D      R  R  L         T         E + T +   +       + KA ++
Sbjct: 310  ALDYFGARVRTSRKILT--------TRKSYAHEALEALATIVLAHVPVKNLNFRPKALYI 361

Query: 362  GYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLER-----------ELKVHIAHARKR 410
              M + +L A +  +  D+RD   NKRLELAG+LL             ELK++I    K+
Sbjct: 362  AVMTRRILMAMANPQLVDDRDYVGNKRLELAGQLLSLLFEDLFKRFNGELKMNIDKILKK 421

Query: 411  MAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRA 470
              +  + D Y   +            +T G++RA STG WS    + ER +G+   L R 
Sbjct: 422  PNRTEEFDAYNILSGH-------GHTITQGMNRAISTGNWSLKRFKMER-AGVTHVLSRL 473

Query: 471  NPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVS 530
            + +  L  + R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL +   ++
Sbjct: 474  SYISALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHIT 533

Query: 531  TSILEPIFEQLFNSGMEKLADDASYSLG------GKFKVFVDGDWIGVCKDSLSFVSELR 584
            T   E   E +    M   A+D     G      G + +F++G   G+ +    F++  R
Sbjct: 534  TDDDE---EHVIRLAMVLGAEDVLAVSGQELYAPGAYVIFMNGTPFGITRYPARFLTRFR 590

Query: 585  RKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYT 638
            + RR  ++   V I  +  Q  V I  D GRI RPL++VEN      +  IKSL+    T
Sbjct: 591  KMRRMGKISEFVSIFINHHQGGVHIATDGGRICRPLIIVENKKSKVTLRHIKSLKAGKMT 650

Query: 639  FQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGII 698
            F+  L  G++E V   EE D   A          E +     TH E++   +LG   G+I
Sbjct: 651  FEDFLKKGLVEYVDVNEENDAHIAI--------YEHEISASTTHLEIEPFTILGAVAGLI 702

Query: 699  PFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKP 758
            PF +H+ + R  YQ      QAIG    N  +R+DTL + + YPQ+P+ +T   +     
Sbjct: 703  PFPHHNQSPRNTYQC-AMGKQAIGAIAYNQFLRIDTLLYLMVYPQQPMVKTRTIE----- 756

Query: 759  GYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVD 818
                  ++   +L  GQNA+VAV  + GY+ ED+LV+N++S++RG  R + +R Y   + 
Sbjct: 757  ------LIKYDKLPAGQNAVVAVMSYSGYDIEDALVLNKSSVDRGFGRCQVLRKYVTTLK 810

Query: 819  NKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA--- 875
                Q   R  D   +      K  R+  ++ DG   +G  ++ G+  I K   +     
Sbjct: 811  KHPNQTMDRIGDRKSDEEGNPIKKHRI--IEGDGLAAVGERIEQGESYILKQVPTHTANN 868

Query: 876  -------------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSS 922
                         D ++  K T+   + KV++S ++  +    V  RQ R P LGDKFSS
Sbjct: 869  PAEGPQNRLGDYKDAAMNYKLTDPAYIDKVMISCSESEQTIIKVLTRQTRRPELGDKFSS 928

Query: 923  MHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGI 982
             HGQKGV G +  QE+ PF   G  PDI++NPH FPSR T G+++E   GK       G+
Sbjct: 929  RHGQKGVCGIIVQQEDMPFNDFGTCPDIIMNPHGFPSRMTVGKMIELLAGKA------GV 982

Query: 983  CSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLI 1042
             SG  +Y T F    V  ++E L   GF+  G + +  G TGE +++ IF GP +YQ+L 
Sbjct: 983  LSGNLQYGTAFGGSKVQDMSEILISHGFNYSGKDFVTSGITGESLQAYIFFGPIYYQKLK 1042

Query: 1043 HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSD 1102
            HM +DK+  R  GP   LTRQP   R R GG++ GEMERDCLIA+GA+  L ERL   SD
Sbjct: 1043 HMVQDKMHSRARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMLSSD 1102

Query: 1103 SYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSM 1162
             +++ +C  C             G      +C  C+S   + +  +PY AKLL QEL SM
Sbjct: 1103 VHEIDLCENC-------------GLMGYSSWCTTCESSKFVTRMKIPYAAKLLLQELLSM 1149

Query: 1163 GITLKFDTE 1171
             +  +   E
Sbjct: 1150 NVLARIVLE 1158


>gi|45545301|gb|AAS67498.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Amanita phalloides]
          Length = 917

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 316/946 (33%), Positives = 490/946 (51%), Gaps = 99/946 (10%)

Query: 201  AEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKRNRLIVRLVDMSKF----EDIK 251
            +EKV +AQE++    ++V      + + +    +S  ++    +    +  F    E   
Sbjct: 1    SEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHRNQERSL 60

Query: 252  GGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKC 311
            G     ++ ++  ++PIW++F ALGV SD++I+  I +  +D  +L +L   I D     
Sbjct: 61   GNVIKATIPYIKVDVPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQ 120

Query: 312  DEFRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLHGTK----QKARF 360
            D       AL ++    +GTT   G S E       E +   + P +  ++    +KA F
Sbjct: 121  DR----EVALDFIGN--RGTT--TGLSRERRIRYAQEILQKEMLPHVSMSEGSESKKAYF 172

Query: 361  LGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLY 420
             GYM+  LL A   RR+ D+RD F  KRL+LAG LL    ++      K + + L + + 
Sbjct: 173  FGYMIHRLLVAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLSKCVE 232

Query: 421  GDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLR 480
              +    +   +    +TNGL  + +TG W    K     +G+   L R     TL  LR
Sbjct: 233  THKEFN-LALAVKHQTITNGLKYSLATGNWGDQKKSMSTKAGVSQVLNRYTYASTLSHLR 291

Query: 481  RTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFE 539
            R    +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  S   P+ E
Sbjct: 292  RCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAPVIE 351

Query: 540  QLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIK 599
             L   G+E L ++A +S     KVFV+G W+GV +D  + V  +++ RR+ ++  +V + 
Sbjct: 352  FLEEWGLESLEENA-HSAVPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVV 410

Query: 600  RDELQSEVRIFMDAGRILRPLLVVEN------------MGKIKSLEGKNYTFQALLDHGI 647
            RD  + E+R++ DAGR+ RPL +VEN            +G   + +G  + ++ L+  GI
Sbjct: 411  RDIRERELRLYTDAGRVCRPLFIVENHQLALQKKHVRWLGNGSNDDGDVFRWEHLVKGGI 470

Query: 648  IELVGTEEEEDCCTAW-------------GIKYLLKDIEDKKPIK---------FTHCEL 685
            +EL+  EEEE    +              G+   + D E    ++         +THCE+
Sbjct: 471  VELLDAEEEETVMISMTPEDLETSRLQQSGVDPNVNDGEYDPAVRLKAGTSAHTWTHCEI 530

Query: 686  DMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRP 745
              S +LG+   IIPF +H+ + R  YQS     QA+G   TN  IR+DT+++ L+YPQ+P
Sbjct: 531  HPSMILGICASIIPFPDHNQSPRNTYQSAM-GKQAMGIYLTNFLIRMDTMANILYYPQKP 589

Query: 746  LFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMF 805
            L  T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+F
Sbjct: 590  LATTRSME-----------YLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLF 638

Query: 806  RSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDI 865
            RS + RSY  +++ K    +    +       ++ K G  D L+DDG    G N+   DI
Sbjct: 639  RSIYYRSY-MDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVTGEDI 697

Query: 866  VIGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQ 910
            +IGK A                +  D S  LK TE G+V +V++++N +G+ F  V +R 
Sbjct: 698  IIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRA 757

Query: 911  VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA 970
             R P +GDKF+S HGQKG +G    QE+ PFT +GI PD++INPHA PSR T G L+E  
Sbjct: 758  TRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDLIINPHAIPSRMTIGHLVECL 817

Query: 971  LGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSL 1030
            L K    +G       +  ATPF   +V++++  L + G+   G E +Y G TG  +++ 
Sbjct: 818  LSKVATLIGN------EGDATPFTDLTVESVSTFLRQKGYHSRGLEVMYHGHTGRKLQAQ 871

Query: 1031 IFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKF 1076
            I++GPT+YQRL HM +DK+  R  GPV  LTRQPV  R R GG++F
Sbjct: 872  IYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 917


>gi|302676710|ref|XP_003028038.1| hypothetical protein SCHCODRAFT_83253 [Schizophyllum commune H4-8]
 gi|300101726|gb|EFI93135.1| hypothetical protein SCHCODRAFT_83253 [Schizophyllum commune H4-8]
          Length = 1142

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 365/1189 (30%), Positives = 552/1189 (46%), Gaps = 142/1189 (11%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETI--VEPGYDPSKKGEGEWRYASMRFG 89
            +F    GLV   I+S+N F+   ++    +  +    V+P +         W    ++F 
Sbjct: 39   AFLKVKGLVKQHIDSFNHFVDADIKNIVKANNKITSDVDPRF---------W----IKFM 85

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
             + +  P        D+  + P   RL+++TYS+ + V  Q   YT+ R    + +T   
Sbjct: 86   DIEVGFPDRNEPEAHDKKSITPHECRLRDITYSAPITVTFQ---YTRGRSIVQRRQT--- 139

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG------DCDFDHGGYFIIKGAEK 203
                            IGR+P+M++S+ C + G  +       +C  D GGYF++KG EK
Sbjct: 140  ----------------IGRLPIMLRSNKCVLTGRTEAQLARMTECPLDPGGYFVVKGTEK 183

Query: 204  VFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLS 263
            V + QEQ+   R+ V       +   S        V+      +   K G   L    + 
Sbjct: 184  VILVQEQLSKNRIIVETDPVKGIVQASCTSSTHGGVK---SKAYVVTKKGRIYLRHNSIH 240

Query: 264  TEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKY 323
             ++PI I    LG+ SDKEI+ L   T  +     I F++  +   K   F + + AL++
Sbjct: 241  EDVPIVIALKGLGIQSDKEIMLL---TAGNTEAYKIAFSANLEDAAKMGVFTQ-QQALEW 296

Query: 324  VDKLIKGTTFPPG--------ESTEECMNTYLFPSLHGT--KQKARFLGYMVKCLLQAYS 373
            +   ++    P G                      + G   + KA F+  M + +L A  
Sbjct: 297  LGARVRVNRRPMGPRRPAYEEALEALATLLLAHVRMDGLDFRPKAIFVATMTRRVLMAMH 356

Query: 374  GRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDRTVRPIE 429
              +  D+RD   NKRLELAG+LL    E   K + ++ +  + K L++     RT     
Sbjct: 357  DEKMVDDRDYVGNKRLELAGQLLALLFEDLFKTYCSNLKAAIDKVLKKP---SRTTEFDA 413

Query: 430  Y---YLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
            Y         +T G  RA STG WS    R ER +G+   L R + +  L  + R   Q 
Sbjct: 414  YNTMMFQGDHITAGFVRAISTGNWSLKRFRMER-AGVTHVLSRLSFISALGMMTRISSQF 472

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-LEPIFEQLFNSG 545
            + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T +  EPI    +  G
Sbjct: 473  EKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVDEEPIIRLAYLLG 532

Query: 546  MEKLADDASYSLGG--KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDEL 603
            +E +A  +   + G   F V V+G+ IG+ K    FV+  R+ RR + +   V I  +  
Sbjct: 533  VEDIALASGSEIYGTHAFIVSVNGNIIGLTKYPARFVTNFRKMRRARRISEFVSIYINHH 592

Query: 604  QSEVRIFMDAGRILRPLLVVE------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEE 657
               V+I  D GRI RP+++VE      +   I  L+    TF   L  G++E +   EE 
Sbjct: 593  HRTVQIATDGGRICRPMIIVEKGRSRVHSEHIALLKKGAATFDDFLRKGLVEYLDVNEEN 652

Query: 658  DCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQ--K 715
            D        Y+     D  P   TH E++   LLG   G+IP+ +H+ + R  YQ    K
Sbjct: 653  DA-------YIALYEADIVPTT-THLEIEPFTLLGAVAGLIPYPHHNQSPRNTYQCAMGK 704

Query: 716  HSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQ 775
             +  AIGF   N   R+DTL +   YPQ+P+ +T   + +G             +L  GQ
Sbjct: 705  QAIGAIGFNQLN---RIDTLLYLSVYPQQPMVKTKTIELIG-----------YDKLPAGQ 750

Query: 776  NAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVN- 834
            NA VAV  + GY+ ED+L++N+ASL+RG  R + +R     V         R +D  V+ 
Sbjct: 751  NATVAVMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLVRKYPNGTYDRLADAPVDE 810

Query: 835  FGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA---------------DHSI 879
             G I  K    D +  DG   +G  +  GD+ + K + + A               +  +
Sbjct: 811  NGNIAKK---YDIIQADGLAGVGERVDPGDVYVNKQSPTNATDNTFNGQAAAVPYKNTPL 867

Query: 880  KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENF 939
              K    G + KV++S  ++ +    V +RQ R P LGDKFSS HGQKGV G + +QE+ 
Sbjct: 868  TYKSPVAGNIDKVLISDTENDQLLVKVLIRQTRRPELGDKFSSRHGQKGVCGLIVNQEDM 927

Query: 940  PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVD 999
            PF  QGI PD ++NPH FPSR T G+++E   GK       G+ +G  +Y T F    V+
Sbjct: 928  PFNDQGINPDTIMNPHGFPSRMTVGKMIELLAGKA------GVLTGKLQYGTAFGGSKVE 981

Query: 1000 AITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHP 1059
             ++  L   GFS  G + L  G TGE + + ++ GP +YQ+L HM  DK+  R  GP   
Sbjct: 982  DMSRILIENGFSYAGKDMLTSGITGEPMEAYVYFGPIYYQKLKHMVMDKMHARARGPRAT 1041

Query: 1060 LTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVI 1119
            LTRQP   R R GG++ GEMERDCLI +GA   L ERL   SD +++  C++C       
Sbjct: 1042 LTRQPTEGRSREGGLRLGEMERDCLIGYGATQLLLERLMISSDKFEVDACQEC------- 1094

Query: 1120 QRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
                  G      +C  C S   + +  +PY AKLL QEL +M +  + 
Sbjct: 1095 ------GLMGYNGWCTYCKSSKKMAQLTIPYAAKLLFQELMAMNVVPRL 1137


>gi|241614087|ref|XP_002407492.1| RNA polymerase III, putative [Ixodes scapularis]
 gi|215502825|gb|EEC12319.1| RNA polymerase III, putative [Ixodes scapularis]
          Length = 1141

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 376/1191 (31%), Positives = 575/1191 (48%), Gaps = 147/1191 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F +  GLV H I+S+N FI   +++   +  E I     DP    +   +Y  +  G+ 
Sbjct: 39   AFLSVQGLVRHHIDSFNHFINVEIKEIVRA-NEKITSDA-DP----QFYLKYLDIHIGKP 92

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             +++      N        P   RL++MTYS+ + V +++   TQ+ V  D         
Sbjct: 93   DVEE------NCVASKATTPHECRLRDMTYSAPITVDIEYTRGTQRVVRGD--------- 137

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWM------KGVEKGDCDFDHGGYFIIKGAEKVF 205
                          IGR+P+M++S  C +      +  +  +C +D GGYF++ G E+V 
Sbjct: 138  ------------FPIGRMPIMLRSANCILADKTHFQMSQMNECPYDPGGYFVVNGVERVI 185

Query: 206  VAQEQICLKRLWVSN----SMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYF 261
            + QEQ+   R+ V       +   V   +  +++R  V           K G   L    
Sbjct: 186  LMQEQLSKNRMIVEEDRKGGLMCQVTSSTHERKSRTNV---------GTKHGRYYLKHNC 236

Query: 262  LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNAL 321
             + +IPI I+F  +G+ SD+EIV +I       SIL+    S+ +  ++   F + + AL
Sbjct: 237  FTEDIPIAIVFKGMGLESDQEIVQMIG---SADSILSTFAPSLEEC-HRSQVFTQTQ-AL 291

Query: 322  KYVDKLIK--------GTTFPPGESTEECMNTYLFPSL----HGTKQKARFLGYMVKCLL 369
            +Y+   +K        G    P +   + + T +   +    +  + KA +L  M++ ++
Sbjct: 292  RYLGGKLKHRRMFFAGGPRKTPVDDARDILATTVLAHVPVEHYNFRVKAMYLALMIRRVI 351

Query: 370  QAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRT---VR 426
            +A + R   D+RD + NKRLELAG LL     +      KR    L+  L  D+T   VR
Sbjct: 352  EAQTNREMIDDRDYYGNKRLELAGSLL----SLLFEDLFKRFNTELK--LVADKTIPKVR 405

Query: 427  PIEY----YLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
              ++    Y+   ++TNGL  + STG W+    + ERI G+   L R + +  L  + R 
Sbjct: 406  ATQFDVVKYVRQDLITNGLVSSISTGNWTVKRFKMERI-GVTQVLTRLSYISALGMMTRV 464

Query: 483  RQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQL 541
              Q + T KV   R   PS +G +C   TP+GE CGLVKNL +   ++T + E PI   L
Sbjct: 465  NSQFEKTRKVSGPRSLQPSQFGMLCPSDTPEGEACGLVKNLALMTHITTDLEEAPIVRLL 524

Query: 542  FNSGME--KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIK 599
             N G+E   L +    S    + VF++G  IGV  +    +  LR  RR   L   V + 
Sbjct: 525  LNLGVEDVHLLNGEELSDPSVYLVFLNGGIIGVVHNHARLLRTLRLLRRSGHLSEFVSLH 584

Query: 600  RDELQSEVRIFMDAGRILRPLLVVE------NMGKIKSLEGKNYTFQALLDHGIIELVGT 653
               +Q  V I  D GR+ RP +VVE          ++ L      F   +  G++E +  
Sbjct: 585  SSRVQRCVNISADGGRMCRPYIVVEGGRPLVTAAHLEDLTRGLLFFNDFVRRGLVEFLDV 644

Query: 654  EEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQS 713
             EE D   A      L++  D  P + TH E++   LLG+  G+IP+ +H+ + R  YQ 
Sbjct: 645  NEENDSYIA------LREC-DIGP-ETTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC 696

Query: 714  QKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYN 773
                 QA+G    N   R+D+L + L YP RP+ +T   + +      H   +P      
Sbjct: 697  AM-GKQAMGTIALNQRNRIDSLLYLLVYPHRPMVKTKTIELI------HFEDIP-----A 744

Query: 774  GQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMV 833
            GQNA VAV  + GY+ ED++VMNR+S++RG  R +  R  K  +     Q   R    +V
Sbjct: 745  GQNATVAVMSYSGYDIEDAIVMNRSSIDRGFGRCQVCRHQKCTLKRYANQSHDRVMGPLV 804

Query: 834  NFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA------------DHS--- 878
            +   ++  I + + LD DG    G  +++  +++ K+  S +            +H    
Sbjct: 805  DSTTMKP-IWKHEPLDTDGIARPGDRIENRQVLVNKWVPSASSVGAQPGQPSPPEHKEVP 863

Query: 879  IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQEN 938
            +  K  E   V+KV++SSN +      + LRQ R P +GDKFSS HGQKGV+G +  QE+
Sbjct: 864  VAYKGLEPVHVEKVLISSNTEEAFLIKLLLRQTRRPEIGDKFSSRHGQKGVVGLIAQQED 923

Query: 939  FPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSV 998
             PF+ QG+ PD+++NPH FPSR T G+L+E   GK       G+ +G   Y T F    V
Sbjct: 924  MPFSDQGVCPDLIMNPHGFPSRMTVGKLIELLAGKA------GVLNGKFHYGTAFGGSKV 977

Query: 999  DAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVH 1058
              + E+L R GF+  G + L  G TGE + + I+ GP +YQ+L HM  DKV  R  GP  
Sbjct: 978  QDVGEELIRRGFNYRGKDCLTSGITGEPLSAYIYFGPIYYQKLKHMVMDKVHARARGPRA 1037

Query: 1059 PLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANV 1118
             LTRQP   R R GG++ GEMERDCLI HGA+  L ERL   SD+ Q+ +CR C      
Sbjct: 1038 VLTRQPTEGRSRDGGLRLGEMERDCLIGHGASLLLLERLMLSSDACQVDVCRGCG----- 1092

Query: 1119 IQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFD 1169
               ++G  R     +C  C S   +    VPY  KLL QEL SM I  + D
Sbjct: 1093 ---LLGYSR-----WCHFCRSSRTMASLRVPYACKLLFQELLSMNIIPRLD 1135


>gi|312374784|gb|EFR22267.1| hypothetical protein AND_15508 [Anopheles darlingi]
          Length = 1134

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 366/1201 (30%), Positives = 561/1201 (46%), Gaps = 164/1201 (13%)

Query: 28   KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMR 87
            K   +F    GLV   I+++N FI   ++K   +  E  V+   DP            ++
Sbjct: 27   KLVPAFLQVKGLVKQHIDAFNYFINVDIKKIVQANQE--VKSDADPC---------FYLK 75

Query: 88   FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
            +  V + KP    G   +     P   RL++MTYS+ + V V++   TQ+ V +      
Sbjct: 76   YLNVHVGKPDVEEG-FNNTKSTTPHECRLRDMTYSAPITVDVEYTRGTQRVVRN------ 128

Query: 148  REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGA 201
                            ++IGR+P+M++S  C + G       +  +C  D GGYFII+G 
Sbjct: 129  ---------------GLLIGRMPIMLRSSNCILNGKSDYELSQVNECPMDPGGYFIIRGT 173

Query: 202  EKVFVAQEQICLKRLWVSNSMGWT---VAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLS 258
            EKV + QEQ+   ++   +  G     V   +  K++R I+           K G   L 
Sbjct: 174  EKVILIQEQLSWNKMITEDYNGLIQCQVTSSTHEKKSRTILY---------SKHGRYYLK 224

Query: 259  VYFLSTEIPIWILFFALGVSSDKEIVNL--IDFTCEDCSILNILFASIHDADNKCDEFRK 316
               ++ EIP+ I+  A+GV+SD+EI+ L  ID   +     ++L A+ H    +      
Sbjct: 225  HNSMTEEIPVAIILKAMGVASDQEIMQLVGIDQETQKRFAPSLLEAAKHKVYTQ------ 278

Query: 317  GRNALKYVDKLIKGTTFPPG--------ESTEECMNTYLFPSL----HGTKQKARFLGYM 364
             + AL+Y+   +    F           +   + + T +   +       + KA ++  M
Sbjct: 279  -QRALEYMGSKLIAKRFTTAATKYRTTADEARDLLATTILAHVPVRSFNFQVKAIYVALM 337

Query: 365  VKCLLQAYSGRRKCDNRDDFRNKRLELAGELLER-----------ELKVHIAHARKRMAK 413
            ++ ++ A   R   D+RD + NKRLELAG LL             ELK+ IA       K
Sbjct: 338  IRRVMAAELDRSAVDDRDYYGNKRLELAGSLLSLMFEDLLKRFNWELKM-IADKNIPKIK 396

Query: 414  ALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPL 473
            A Q D         +  ++  +++T+GL  A STG W+    + ER +G+   L R + +
Sbjct: 397  AAQFD---------VGKHMREALITSGLETAISTGNWTIKRFKMER-AGVTQVLSRLSYI 446

Query: 474  QTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI 533
              L  + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T +
Sbjct: 447  SALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEV 506

Query: 534  -LEPIFEQLFNSGME--KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRK 590
              EP+    +N+G+E  +L    + +    F VF++G+ +GV       V   R  RRR 
Sbjct: 507  DEEPVIRLAYNAGVEDIRLIGGETINNPKVFMVFINGNILGVTIAYRRLVEVFRMMRRRG 566

Query: 591  ELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLD 644
             +   V I     Q  V I  D GR+ RP ++V+          I+ L+     F   L 
Sbjct: 567  LIGAFVSIHTSFTQRCVYIHTDGGRLCRPYIIVQAGLPLVLQEHIEQLKLGLRKFDDFLH 626

Query: 645  HGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHD 704
             G+IE +   EE D   A    Y  +DI+   P K TH E++   LLG+  G++P+ +H+
Sbjct: 627  DGLIEYLDVNEENDSFIA----YQERDID---PEKTTHLEIEPFTLLGVCAGLVPYPHHN 679

Query: 705  HARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNH 764
             + R  YQ      QA+G    N   R+DTL + + YPQ P+ R+   +           
Sbjct: 680  QSPRNTYQC-AMGKQAMGIIGYNQKNRIDTLMYNIVYPQTPMVRSRTIE----------- 727

Query: 765  ILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQV 824
            +    +L  GQNA VAV  + GY+ ED+L++N+AS++RG  R    ++ K  +     Q 
Sbjct: 728  LTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTIKRYSNQT 787

Query: 825  KRRSSDDMVN--FGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHS---- 878
              R    M +   GK+   I R + LD DG    G  L     ++ K   +   ++    
Sbjct: 788  FDRIMGPMKDSLTGKV---IARHECLDTDGIVSPGERLVCKQTMVNKEMPAVKSNNPIEQ 844

Query: 879  --------------IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMH 924
                          I  K TE    ++V++S+N++ +    + LRQ R P +GDKFSS H
Sbjct: 845  KESGQQPIAYSAVPITYKGTEPSYAERVLVSTNNEEEFLVKILLRQTRRPEIGDKFSSRH 904

Query: 925  GQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICS 984
            GQKGV G +  QE+ PF   G+ PD+V+NPH FPSR T G+ LE    K       G+  
Sbjct: 905  GQKGVTGLIVDQEDLPFNDYGMAPDMVMNPHGFPSRMTVGKTLELLGSKA------GVLE 958

Query: 985  GLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHM 1044
            G   Y T F       + ++L + GF+  G +  Y G TGE +   I+ GP +YQ+L HM
Sbjct: 959  GKFHYGTAFGGSKCQDLQDELFQNGFNYLGKDVFYSGITGEPLEVYIYSGPVYYQKLKHM 1018

Query: 1045 SEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSY 1104
             +DK+  R  GP   LTRQP   R R GG++ GEMERDCLI++GA+  + ERL   SD++
Sbjct: 1019 VQDKMHARARGPRAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAF 1078

Query: 1105 QMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
             + +C  C             GR     +C  C S   + K ++PY  KLL QEL SM I
Sbjct: 1079 DVDVCNVC-------------GRLAYSSWCHNCRSSASVSKISMPYACKLLFQELTSMNI 1125

Query: 1165 T 1165
             
Sbjct: 1126 V 1126


>gi|378727686|gb|EHY54145.1| DNA-directed RNA polymerase III subunit C2 [Exophiala dermatitidis
            NIH/UT8656]
          Length = 1225

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 362/1213 (29%), Positives = 576/1213 (47%), Gaps = 175/1213 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+S+N F++  L+K  D+  E ++    DP            +++  +
Sbjct: 98   AFLKVKGLVKQHIDSFNHFVEVELKKIIDA--EPVITSDIDPD---------FYIKYENI 146

Query: 92   TLDKPSFFAGNGGD------EHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
             + KP  +  + GD      E  + P   RL++MTY++ + V ++   YT+ +V      
Sbjct: 147  YVGKPRRYDEHMGDLRDSKDESTVTPNECRLRDMTYAAPILVDIR---YTKSKVA----- 198

Query: 146  TGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIK 199
                 Y +K         + IGR+P+M++S  C +    + +      C  D GGYFI+ 
Sbjct: 199  -----YRRK--------GMPIGRLPIMLRSSRCVLANKSEAEMCAMDECPLDPGGYFIVN 245

Query: 200  GAEKVFVAQEQICLKRLWVSNS-----MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGE 254
            G EKV + QEQ+   R+ V        +  +V   +  ++++  + L         K   
Sbjct: 246  GTEKVILVQEQLSKNRIIVEADPKKELITASVTSSTHARKSKSYIVL---------KKDM 296

Query: 255  KVLSVYFLSTEIPIWILFFALGVSSDKEIVNLI---DFTCEDCSILNI---LFASIHDAD 308
              +    L+ ++PI +L  A+GV+SD +++ ++   D T +D   +N    +   IH   
Sbjct: 297  LYMRHNILNEDVPICVLLKAMGVTSDMDMMAIVAGTDSTLQDDFAINFEETIKLGIHTQ- 355

Query: 309  NKCDEFRKGRNALKYVDKLIKGTTFPPG----------ESTEECMNTYL--FPSLH-GTK 355
                     + AL Y+   IK T  P            E+ E   N ++   P  +   +
Sbjct: 356  ---------QQALDYLGARIKITRKPTPFGQSRRNYVQEALEAVSNVFIAHVPIENLNFR 406

Query: 356  QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRM 411
             KA ++ +M + +L A       D+RD   NKRLELAG+LL    E   K +    +  M
Sbjct: 407  PKAIYVAHMARRVLMAKQNPALVDDRDYVGNKRLELAGQLLSLLFEDLFKKYNYDIKMNM 466

Query: 412  AKALQRDLYGDRT--VRPIEYYL-DASILTNGLSRAFSTGAWSHPFKRTERISGIVANLG 468
             K L++    +RT    P    +  A+ +T G++RA +TG W+    R +R +G+   L 
Sbjct: 467  DKVLRKP---NRTEMADPCTVMMGHANHITQGMNRAIATGNWNLKRFRMDR-AGVTHLLS 522

Query: 469  RANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGL 528
            R + + +L  + R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL +   
Sbjct: 523  RLSFIASLGMMTRISSQFEKTRKVSGPRALQPSSFGMLCPADTPEGEACGLVKNLALMTH 582

Query: 529  VSTSILE-PIFEQLFNSGMEKLADDASYSL--GGKFKVFVDGDWIGVCKDSLSFVSELRR 585
            ++T   E PI   +F  G E +       L   G + V ++G  +   +    F++  RR
Sbjct: 583  ITTDDEEAPIKRLIFMLGAEDIVTVGGTELYAPGSYLVLLNGTPVATTRQPSHFLTSFRR 642

Query: 586  KRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTF 639
             RR   +   V    +     + +  D GRI RPL++VE+         +KSL   +  F
Sbjct: 643  LRRSGRVSEFVSTFINHHHRTINVATDEGRICRPLIIVEDKKSKVTKRYLKSLRQGSMDF 702

Query: 640  QALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIP 699
               L  G++E +   EE D   A          E       TH E++   +LG   G+IP
Sbjct: 703  DDFLARGLVEYLDVNEENDSNIAL--------YESDINASTTHLEIEPFTVLGAVAGLIP 754

Query: 700  FANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPG 759
            + +H+ + R  YQ      QAIGF   N  +R+DTL + + YPQ+PL +T   +      
Sbjct: 755  YPHHNQSPRNTYQCAM-GKQAIGFIANNQFLRIDTLLYLMVYPQKPLCKTRTIE------ 807

Query: 760  YGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDN 819
                 ++   +L  GQNA VAV  + GY+ ED+LV+N+AS++RG  R + +R Y      
Sbjct: 808  -----LVKYDKLPAGQNATVAVMSYSGYDIEDALVLNKASVDRGFGRCQVLRKYPVS--- 859

Query: 820  KEMQVKRRSSDDMVNFGKIQS--KIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH 877
              +++    + D V    +++   +     LD+DG   +GA +  G++ + KY    A+ 
Sbjct: 860  --LKLYANGTKDTVEGPTMENGVPVKAHALLDEDGIASVGAKVSQGEVYVNKYVPENANS 917

Query: 878  S------------------IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDK 919
            S                   K +  +   + KV++S  + G     +  RQ R P +GDK
Sbjct: 918  SGLSDTASNSLGTSLMPQAQKYRLPDPSYIDKVMVSEVESGNQLIKIQTRQTRVPEVGDK 977

Query: 920  FSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALG 979
            FSS HGQKGV+G +  Q + PF+ +GI PDI++NPH FPSR T G++LE   GK      
Sbjct: 978  FSSRHGQKGVVGIIAEQVDMPFSDRGITPDIIMNPHGFPSRMTVGKMLELVAGKA----- 1032

Query: 980  KGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQ 1039
             GI  G   Y T F    +  +++ L  AG+S  G + L  G TGE + + +F+GP +YQ
Sbjct: 1033 -GILKGKFEYGTAFGGSKLADLSKALIEAGYSYDGKDYLTSGITGEPLPAYVFMGPIYYQ 1091

Query: 1040 RLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFT 1099
            +L HM +DK+  R+ GP   LTRQP   R R GG++ GEMERDCLIA+GA+  L ERL  
Sbjct: 1092 KLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLRERLML 1151

Query: 1100 LSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRIC----DSGDDIVKANVPYGAKLL 1155
             SD +++ +C  C             G    G +C+ C    +SG ++V+  +PY  KLL
Sbjct: 1152 SSDKHEVDVCESC-------------GFMAFGRWCQRCATAGESGSNVVRMTLPYAFKLL 1198

Query: 1156 CQELFSMGITLKF 1168
              EL SM +  + 
Sbjct: 1199 LNELGSMNVNTRL 1211


>gi|89274902|gb|ABD65892.1| RNA polymerase II second largest subunit, partial [Sparassis crispa]
          Length = 900

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 305/877 (34%), Positives = 459/877 (52%), Gaps = 92/877 (10%)

Query: 258  SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG 317
            S+ ++  +IPIW++F ALGV SD++I+  I +  +D  +L +L   I D     D     
Sbjct: 51   SIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDR---- 106

Query: 318  RNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSLH----GTKQKARFLGYMVKCL 368
              AL ++    +GTT            +E +   + P +        +KA F GYM+  L
Sbjct: 107  EVALDFIGN--RGTTTGLNRERRLRYAQEILQKEMLPHISMAEGSESKKAYFFGYMIHRL 164

Query: 369  LQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPI 428
            L A   RR  D+RD F  KRL+LAG LL    ++      K + + LQ+ +   +    +
Sbjct: 165  LLAALERRDLDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVESHKEFN-L 223

Query: 429  EYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQY 488
               + ++ +TNGL  + +TG W    K     +G+   L R     TL  LRR    +  
Sbjct: 224  NLAVKSNTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGR 283

Query: 489  TGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGME 547
             GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  S+  P+ E L   G+E
Sbjct: 284  EGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMACISVGSLSAPVIEFLEEWGLE 343

Query: 548  KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEV 607
             L ++A +S     KVFV+G W+GV +D  + V  +++ RR+ ++  +V + RD  + E+
Sbjct: 344  SLEENA-HSATPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREREL 402

Query: 608  RIFMDAGRILRPLLVVENMGKI----------------KSLEGKNYTFQALLDHGIIELV 651
            R++ DAGR+ RPL +VEN   +                K+L G  Y +  L+  G+IEL+
Sbjct: 403  RLYTDAGRVCRPLFIVENQQLLLTKKHIDLLNRSAEEEKALPGSGYKWDNLIKSGVIELL 462

Query: 652  GTEEEED---CCT----------AWGIKYLLKDIEDKKPIK----------FTHCELDMS 688
              EEEE    C T          + G+     D ED  P            +THCE+  S
Sbjct: 463  DAEEEETVMICMTPEDLDNSRLQSSGVDPHAND-EDFDPAARLKAVTNAHTWTHCEIHPS 521

Query: 689  FLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFR 748
             +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DT+++ L+YPQ+PL  
Sbjct: 522  MILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGIYLTNFLVRMDTMANILYYPQKPLAT 580

Query: 749  TMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSE 808
            T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS 
Sbjct: 581  TRSME-----------YLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSM 629

Query: 809  HIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIG 868
            + RSY  +++ K    +    +       ++ K G  D L+DDG    G  +   DI+IG
Sbjct: 630  YYRSY-MDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVNGEDIIIG 688

Query: 869  KYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRS 913
            K A                +  D S  LK TE G++ +V++++N DG+ F  + +R  R 
Sbjct: 689  KTAPIPPDSEELGQRTRAHTKRDVSTPLKSTESGIIDQVLITTNADGQKFVKIRVRSTRV 748

Query: 914  PCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGK 973
            P +GDKF+S HGQKG +G    QE+ PFT +GI PDI+INPHA PSR T G L+E  L K
Sbjct: 749  PQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSK 808

Query: 974  GIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFI 1033
                +G       +  ATPF   +V+++++ L + G+   G E +Y G TG  +++ +++
Sbjct: 809  VATLIGN------EGDATPFTELTVESVSQVLRQKGYQSRGLEVMYHGHTGRKLQAQVYL 862

Query: 1034 GPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKR 1070
            GPT+YQRL HM +DK+  R  GPV  LTRQPV  R R
Sbjct: 863  GPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSR 899


>gi|380017785|ref|XP_003692825.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Apis florea]
          Length = 1134

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 357/1195 (29%), Positives = 562/1195 (47%), Gaps = 157/1195 (13%)

Query: 28   KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMR 87
            K   +F    GLV   I+S+N FI   ++K   +  + + +   DP            ++
Sbjct: 30   KLVPAFLKGKGLVKQHIDSFNYFINVEIKKIVKANEKVLSDA--DP---------LFYVK 78

Query: 88   FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
            +  V +  P    G         P   RL+++ YS+ + V +++               G
Sbjct: 79   YLNVHVGLPDVEEGFNVTRSTT-PHECRLRDLNYSAPITVDIEY-------------IRG 124

Query: 148  REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGA 201
             +  I+         N++IGR+P+M++S  C + G       +  +C  D GGYFI+ G 
Sbjct: 125  HQPIIK--------NNLLIGRMPIMLRSSNCVLTGKSHFELAKMNECPHDPGGYFIVNGQ 176

Query: 202  EKVFVAQEQICLKRLWVS-NSMGWTVA----YKSENKRNRLIVRLVDMSKFEDIKGGEKV 256
            EKV + QEQ+   R+ +  +S G  VA       E K    IV           + G   
Sbjct: 177  EKVILIQEQMLRNRIILEEDSKGCIVASCNSVTHERKTKTNIVG----------RAGRYY 226

Query: 257  LSVYFLSTEIPIWILFFALGVSSDKEIVNLI----DF------TCEDCSILNILFASIHD 306
            +       +IP+ I+F A+G+ SD+EI+ LI    +F      + E+C +LN+       
Sbjct: 227  MRHNIFQDDIPVTIIFKAMGIVSDQEIMQLIGTEEEFMKKFAPSLEECHVLNVF------ 280

Query: 307  ADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVK 366
            A N+   F   +   K    +    T    ++    + +++       K KA ++  M++
Sbjct: 281  AQNQALRFLSNKRKQKRYSVIKSSITDEMKDALATNILSHVPVIDFNFKMKATYIALMIR 340

Query: 367  CLLQAYSGRRKCDNRDDFRNKRLELAGELLER-----------ELKVHIAHARKRMAKAL 415
             +++A S  +  D+RD + NKRLELAG LL             ELK  IA       KA 
Sbjct: 341  KVMKAQSDGKLVDDRDYYGNKRLELAGSLLSLMFEDLFKRFNWELK-QIADKNIPKIKAA 399

Query: 416  QRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQT 475
            Q D         I  ++    +TNGL+ A S+G W+    + ER  G+   L R + +  
Sbjct: 400  QFD---------IVKHMRQDQITNGLAFAISSGNWTIKRFKMER-HGVTQVLSRLSYISA 449

Query: 476  LVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-L 534
            L  + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T I  
Sbjct: 450  LGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEGCGLVKNLALMTHITTEIDE 509

Query: 535  EPIFEQLFNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL 592
            EPI    FN G+E +       +  K  + VF++G+ +G+ K+    V+  R  RR+  +
Sbjct: 510  EPIIRLAFNLGVENVNILGGEEINNKNVYMVFLNGNILGIVKNYQRLVNVFRLLRRKGLI 569

Query: 593  PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHG 646
               V I        ++I  D GR+ RP ++V+N         IK LE    +F+  L  G
Sbjct: 570  NGFVSIYTQHQHRCIQISSDGGRLCRPYIIVQNGDPLVQEEHIKLLEQGIRSFEDFLQDG 629

Query: 647  IIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHA 706
            +IE +   EE D   A+   ++ +        K TH E++   LLG+  G++P+ +H+ +
Sbjct: 630  LIEYLDVNEENDSSIAFNESHINE--------KTTHLEIEPFTLLGVCAGLVPYPHHNQS 681

Query: 707  RRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHIL 766
             R  YQ      QA+G    N   R+DTL + L YPQ P+ ++   +           ++
Sbjct: 682  PRNTYQCAM-GKQAMGTIGYNQRNRIDTLMYNLVYPQTPMVKSRTIE-----------LI 729

Query: 767  PRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKR 826
               +L  GQNA +AV  + GY+ ED+L++N+AS++RG  R    R+ K  +     Q   
Sbjct: 730  NFDKLPAGQNATIAVMSYSGYDIEDALILNKASIDRGFGRCLVYRNAKCTLKRYANQTYD 789

Query: 827  RSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSG------------ 874
            R    +++ G  +  + + + +D DG    G  +++  +++ K + +             
Sbjct: 790  RIMGPLID-GNTKKSVWKHEIIDSDGIAAPGEMVENRKVMVNKSSPAANIGPVNSGNVQT 848

Query: 875  ----ADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVL 930
                 D  +  K      ++KV++SSN +      + LRQ R P +GDKFSS HGQKGV+
Sbjct: 849  QTEYKDVPVVFKGPVPAYIEKVMISSNAEDAFLIKLLLRQTRRPEIGDKFSSRHGQKGVV 908

Query: 931  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYA 990
            G +  QE+ PF   GI PD+++NPH FPSR T G+L+E   GK       G+  G   Y 
Sbjct: 909  GLIVEQEDMPFNDYGICPDMIMNPHGFPSRMTVGKLIELLAGKA------GVIKGEFHYG 962

Query: 991  TPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVK 1050
            T F    V+ +  +L + GF+  G +  Y G TGE +++ I+ GP +YQ+L HM +DK+ 
Sbjct: 963  TAFGGSKVEDVCSELVKHGFNYLGKDFFYSGITGEPLQAYIYSGPVYYQKLKHMVQDKMH 1022

Query: 1051 FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICR 1110
             R  GP   LTRQP   R + GG++ GEMERDCLI +GA+  L ERL   SD++ + +C 
Sbjct: 1023 ARARGPRAVLTRQPTGGRAKEGGLRLGEMERDCLIGYGASMMLIERLMISSDAFDIDVCN 1082

Query: 1111 KCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
            KC             G      +C  C S   +   ++PY  KLL QEL SM I 
Sbjct: 1083 KC-------------GLMAYSGWCHSCRSSSCVSTISMPYACKLLFQELQSMNIV 1124


>gi|322710723|gb|EFZ02297.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Metarhizium
            anisopliae ARSEF 23]
          Length = 1157

 Score =  484 bits (1247), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 389/1234 (31%), Positives = 578/1234 (46%), Gaps = 170/1234 (13%)

Query: 8    FTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIV 67
             TDP +  D   + L  F +          GLV   I+SYN F++  ++    +   TI 
Sbjct: 21   LTDPVNTRDDKFQLLPAFLKVK--------GLVKQHIDSYNFFVEQEIKDIVRA-NRTI- 70

Query: 68   EPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEH-DMFPRHARLQNMTYSSRMK 126
                  S      W    + F  + +D+P     N      ++ P   RL++MTY++ + 
Sbjct: 71   -----RSDVDSNFW----LEFTDIRVDRPRRQDHNDAKSRTEVTPMECRLRDMTYAAPIV 121

Query: 127  VKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG 186
            V + +          DK +  R              N+ +GR+PVM+KS  C + G    
Sbjct: 122  VDIAY--------IRDKQRIIRR-------------NVPLGRMPVMLKSSRCRLSGANNA 160

Query: 187  ------DCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKRN 235
                  +C  D GGYF+I G EKV + QEQ+   R+ V     +N +  +V   +  +++
Sbjct: 161  QMEAMNECPLDPGGYFVINGTEKVILIQEQLSKNRVIVEADEKNNIISASVTSSTHERKS 220

Query: 236  RLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLI---DFTCE 292
            +  V L         K    V++   L   IPI I+  ALG  SD EI+ L+   D   +
Sbjct: 221  KTYVTL---------KKDRIVMTHNVLVEGIPIVIILKALGGLSDYEIMQLVAGSDGRYQ 271

Query: 293  DCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIK----GTTFPPG---ESTEECMNT 345
            D  ++N       D   +   F +   AL+Y+   +K       F P     + EE ++ 
Sbjct: 272  DEFVINF------DEATRAGVFTQ-HQALEYIGARVKMGSRKAMFGPQVRRNNVEEGLDA 324

Query: 346  YL-----FPSLHGTK--QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL-- 396
                      + G     KA ++  M + +L A    +  D+RD   NKRLELAG+LL  
Sbjct: 325  LANLIIAHVPIEGLDFYPKAIYVAMMTRRVLMASQDSKLVDDRDFVGNKRLELAGQLLSL 384

Query: 397  --ERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTN---GLSRAFSTGAWS 451
              E   K  +   +  + K L+++   +R V     ++ ++   N   G++RA  TG WS
Sbjct: 385  LFEDLFKRFMGEVKMSIDKFLKKN---NRAVPLDAVHMISNHANNIGMGINRAIQTGNWS 441

Query: 452  HPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLST 511
                   R +G+   L R + +  L  + R   Q + T KV   R   PS WG +C   T
Sbjct: 442  VKRFNMNR-AGVTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDT 500

Query: 512  PDGENCGLVKNLGVTGLVSTSILE-PIFEQLF--NSGMEKLAD--DASYSLGGKFKVFVD 566
            P+GE CGLVKNL +   ++T++ E P+   +F  ++G+E + +   A     G + + V+
Sbjct: 501  PEGEACGLVKNLALMTHITTNVDEAPVKRWIFTLDTGVEPIRNFSGAEMHREGSWVIHVN 560

Query: 567  GDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENM 626
            G    + +    F S  R  RRR  +   V I  +   + V I  D GRI RP ++V+N 
Sbjct: 561  GTPFALTRYPKRFASRFRTMRRRGWISPFVSINLNSHFNAVHIATDEGRICRPYIIVKN- 619

Query: 627  GK-------IKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIK 679
            GK       +K L     TF   L  GI+E +   EE+D         L+   E++    
Sbjct: 620  GKQKLRHEHLKLLHLGKVTFDDFLTKGIVEYLDVNEEQDA--------LITLYENQITQS 671

Query: 680  FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQL 739
             TH E++   LLG   G+IPF +H+ + R  YQ      QAIG    N   R+DTL + L
Sbjct: 672  TTHLEIEPFTLLGAVAGLIPFPHHNQSPRNTYQC-AMGKQAIGAIAYNQFNRIDTLLYTL 730

Query: 740  FYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRAS 799
             YPQRP+  T     +      H   LP      GQNA V V  + GY+ ED+LV+N+AS
Sbjct: 731  VYPQRPMVITKTIQLV------HYDKLP-----AGQNATVVVMSYSGYDIEDALVLNKAS 779

Query: 800  LERGMFRSEHIRSYKAEVDNKEMQVKRRSSD--DMVNFGKIQSKIGRVDSLDDDGFPFIG 857
            ++RG  R +  R Y  E+       + R  D  + VN G  + ++ + ++LDDDG   +G
Sbjct: 780  IDRGFGRCQVFRKYTTELQKYPNGRRERIGDPVNQVNGGTTRREV-KYEALDDDGLATVG 838

Query: 858  ANLQSGDIVIGKYA-----------DSGA----DHSIKLKHTERGMVQKVVLSSNDDGKN 902
              ++SG++++ K             D G     D +I  +  +   + KV++S  +    
Sbjct: 839  YRVKSGEVMVKKETPLDLTTTGIGLDRGPSEYRDSAISYRIPDPAYIDKVMISQTEKDTT 898

Query: 903  FSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQT 962
               V  RQ R P LGDKFSS HGQKGV+G +  QE+ PF   G+ PDI++NPH FPSR T
Sbjct: 899  VIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVDQEDMPFADNGLCPDIIMNPHGFPSRMT 958

Query: 963  PGQLLEAALGKGIAALGKGICSGLKRYA--TPFATPSVDAITEQLHRAGFSKWGTERLYD 1020
             G+LLE   GK        I  G   Y     F +  V  +++ L   GFS  G +    
Sbjct: 959  VGKLLECLTGKA------SIIDGRPDYGFGDAFRSHPVKDMSQVLLDYGFSWEGKDYFTS 1012

Query: 1021 GRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEME 1080
            G TGE + + IF GP +YQRL HM +DK+  R+ GP   LTRQP   R R GG++ GEME
Sbjct: 1013 GLTGEPLEAYIFNGPIYYQRLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEME 1072

Query: 1081 RDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSG 1140
            RDCLIA+GA+  L ERL   SD   + IC++C            G    +G YC  C S 
Sbjct: 1073 RDCLIAYGASQLLLERLMLSSDGVTLDICQQC------------GLFGYKG-YCNTCKST 1119

Query: 1141 DDIVKANVPYGAKLLCQELFSM--GITLKFDTEF 1172
              + +  +PY AKLL QEL SM  G+ L+ + EF
Sbjct: 1120 RQVTQMQMPYAAKLLVQELISMNVGVRLQLEDEF 1153


>gi|6606125|gb|AAF19075.1|AF107803_1 DNA-dependent RNA polymerase II RPB140 [Curvularia brachyspora]
          Length = 942

 Score =  484 bits (1247), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 326/979 (33%), Positives = 487/979 (49%), Gaps = 140/979 (14%)

Query: 201  AEKVFVAQEQICLKRLWV----SNSMGWTVAYKSENKRNRLIVRLVDMSKFED------- 249
            +EKV +AQE+     + V       + W    +S  ++   ++   ++   E+       
Sbjct: 1    SEKVLIAQERSAANIVQVFRKKQGPIPWIAEIRSAVEKGTRLISSFNIKWAENSLAGPGK 60

Query: 250  -IKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDAD 308
             I G     ++ ++  ++P+ I+F ALG+ SD+EI++ I +   D  +L +L  SI +  
Sbjct: 61   RIPGPFAYATLPYIKADVPMAIVFRALGIVSDEEILSHIVYDRTDTQMLELLKPSIEEGS 120

Query: 309  NKCDE-------FRKGRNA------LKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTK 355
               D         ++G N+      LK+   +++   F P  S +E  +T          
Sbjct: 121  VVQDRETALDFIAKRGANSGTKDRRLKFARDIMQ-REFLPHISQKEGQDT---------- 169

Query: 356  QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKAL 415
            +KA F GYM+  LLQ   GRR  D+RD F  KRL+LAG L+    ++      K + K L
Sbjct: 170  RKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRILFLKLTKDVYKYL 229

Query: 416  QRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQT 475
            QR +  ++    ++  + ASI+TNGL  + +TG W    K     +G+   L R     T
Sbjct: 230  QRCVENNQDFN-VQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTYAST 288

Query: 476  LVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SIL 534
            L  LRRT   V   GK+   R  H SHWG +C   TP+G+ CGLVKNL +   VS  S  
Sbjct: 289  LSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSDA 348

Query: 535  EPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPT 594
             PI + +    M+ L +          KVFV+G W+GV  ++   V+ ++  RR   L  
Sbjct: 349  SPIIDFMTQRNMQLLEEYDQNQNPDATKVFVNGVWVGVHSNAQQLVTVVQELRRNGTLSY 408

Query: 595  QVEIKRDELQSEVRIFMDAGRILRPLLVVEN----------------MGKIKS------- 631
            ++ + RD    E +IF DAGR++RPL VVEN                  K+K+       
Sbjct: 409  EMSLIRDIRDREFKIFTDAGRVMRPLFVVENDIRKPNRNHLIFTKEISNKLKAEQSETST 468

Query: 632  --------LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYL--------------- 668
                    +E   Y ++ L+  G++E +  EEEE     +  + L               
Sbjct: 469  RQGWSQEEVEQATYGWRGLIQDGVVEYLDAEEEETAMITFSPEDLEEWREMKMGLPAAER 528

Query: 669  ----------LKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSS 718
                      LK + D +   +THCE+  + +LG+   IIPF +H+ + R  YQS     
Sbjct: 529  STEGKDRLRRLKPLPDPRIHSYTHCEIHPAMILGICASIIPFPDHNQSPRNTYQS-AMGK 587

Query: 719  QAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAI 778
            QA+G   TN ++R++T+ + L+YPQ+PL  T   + L              EL  GQNAI
Sbjct: 588  QAMGVALTNFALRMETMMNVLYYPQKPLATTRSMEYLK-----------FRELPAGQNAI 636

Query: 779  VAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK- 837
            VA+  + GYNQEDS++MN++S++RG+FRS   R+Y         Q KR   + +  F K 
Sbjct: 637  VAIATYGGYNQEDSVIMNQSSIDRGLFRSLFYRAYTE-------QEKRIGVNVLEQFEKP 689

Query: 838  -----IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH--------------- 877
                 ++ K G  D LDDDG    G  +   DI+IGK A   AD                
Sbjct: 690  TRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAADAQELGQKTTMHTKRDV 749

Query: 878  SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQE 937
            S  L+ TE G+V +V+ ++N +G  F  V  R  + P +GDKF+S HGQKG +G    QE
Sbjct: 750  STPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRQE 809

Query: 938  NFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPS 997
            + PFT +G+ PD++INPHA PSR T   L+E  L K       G  +G +  ATPF   +
Sbjct: 810  DMPFTREGVTPDLIINPHAIPSRMTIAHLVECLLSK------VGAITGQEGDATPFTDVT 863

Query: 998  VDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPV 1057
            VD I++ L  AG+ K G E +Y+G TG+ +R+ IF+GPT+YQRL HM +DK+  R  GP+
Sbjct: 864  VDQISQLLEDAGYQKRGFEIMYNGHTGKKLRTQIFLGPTYYQRLRHMVDDKIHARARGPL 923

Query: 1058 HPLTRQPVADRKRFGGIKF 1076
              LTRQPV  R R GG++F
Sbjct: 924  QILTRQPVEGRARDGGLRF 942


>gi|452986015|gb|EME85771.1| hypothetical protein MYCFIDRAFT_40745, partial [Pseudocercospora
            fijiensis CIRAD86]
          Length = 1132

 Score =  484 bits (1247), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 369/1209 (30%), Positives = 573/1209 (47%), Gaps = 180/1209 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GL+    +S++ F+   L+K   +  E I     D  +K    W    ++F  +
Sbjct: 32   AFLRVKGLIKQHTDSFDYFVDIELKKILKA-NEFIFT---DDKRK----W----IKFVDI 79

Query: 92   TLDKPSFF--AGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
             + KP     A  G  + ++ P   RL++MTY++ + +     +Y ++     K      
Sbjct: 80   RVGKPCRIEDARAGYVQTEVTPNECRLRDMTYAAPIYLDF---IYPRQAGNVRK------ 130

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGAEK 203
                        TN++IGR+P+M++S  C +KG  + +      C  D GGYFI++G EK
Sbjct: 131  ------------TNVLIGRLPMMLRSSKCVLKGRSESEMACLNECAVDPGGYFIVRGQEK 178

Query: 204  VFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLS 263
            V + QEQ+   R+ V +  G   A  + +  N      V    +  +K G   L    LS
Sbjct: 179  VILVQEQLSKNRVIVESFKGVIQASVTSHTAN------VKTKTYVLLKKGHIYLKHNSLS 232

Query: 264  TEIPIWILFFALGVSSDKEIVNLI---DFTCEDCSILNILFASIHDADNKCDEFRKGRNA 320
             +IP+ ++  A+GV SD EI+ L    D   +D    N+  A++     +         A
Sbjct: 233  EDIPVAVMLRAMGVQSDHEILLLAAGNDAQYQDEFAPNLELAALEGVFTQ-------EQA 285

Query: 321  LKYVDKLIKGTTFP-------PGESTEECMNTYLFPSLH----GTKQKARFLGYMVKCLL 369
            L ++   +K   F        P +   E +   + P +       + KA ++ +M + +L
Sbjct: 286  LDFIATRLKPDRFASRRQERTPKQQALEKLAGTIIPHVEVEGMNFRPKALYVAFMTRRVL 345

Query: 370  QAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQR-----DLY 420
             A +  +  D+RD   NKRLELAG++L    E   K  +   +  M K L++     +  
Sbjct: 346  MAMNDPKLVDDRDYVGNKRLELAGQMLSLLFEDLFKDCVRQIKGNMDKILKKANPTQEFD 405

Query: 421  GDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLR 480
              R V  IE     S +T+G+ RA STG W+    R +R +G+   L R + +  L  + 
Sbjct: 406  PLRLVEQIE-----SRITSGMERAISTGNWTLKRFRMDR-AGVTHVLSRLSYISALGMMT 459

Query: 481  RTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFE 539
            R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL +   ++T+  E P+ +
Sbjct: 460  RITSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTADDEAPVRK 519

Query: 540  QLFNSGMEKLADDASYSL--GGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVE 597
             ++  G E +   +   +   G + VF++G    + +    F+   R+ RR   +   V 
Sbjct: 520  IIYILGAEDVTSVSGTEIYGNGAYIVFINGTPAALTRQPKQFLLGFRKFRRMGRISEFVS 579

Query: 598  IKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGIIEL 650
            I  +   + V I  D GR+ RPL+VVE  GK       ++SL      F   L  G++E 
Sbjct: 580  IFINHHHNGVHIATDEGRVCRPLIVVEK-GKSKVTARFLESLRKGAMDFDDALSRGLVEY 638

Query: 651  VGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVL 710
            +   EE D      I    KDI +      TH E++   +LG   G+IP+ +H+ + R  
Sbjct: 639  LDVNEENDS----NIAVYEKDINEHT----THLEIEPFTILGAVAGLIPYPHHNQSPRNT 690

Query: 711  YQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPE 770
            YQ      QAIG    N   R+DTL + + YPQ+P+  T   +           ++   +
Sbjct: 691  YQC-AMGKQAIGAIAYNQFTRIDTLLYLMVYPQKPMVTTRTIE-----------LVKYDK 738

Query: 771  LYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSD 830
            L  GQNA+VAV  + GY+ ED+LV+N+AS +RG  R                Q+ ++ S 
Sbjct: 739  LPAGQNAVVAVMSYSGYDIEDALVLNKASCDRGFGRC---------------QIFKKISM 783

Query: 831  DMVNFGKIQSKIGRVDSLDD-------------DGFPFIGANLQSGDIVIGKYADSGADH 877
             +  +G      G  D LDD             DG   +G+ L++GD+ + K +      
Sbjct: 784  PLKAYGN-----GYTDRLDDRDPSNTRHRKIGKDGLVEVGSELENGDMYMLKASPINQSQ 838

Query: 878  SI------------KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHG 925
            +I              K  +     KV++++N+       +  RQ R P +GDKFSS HG
Sbjct: 839  AIPQKDQKWSPMHMSYKLPDPSYADKVMITANEANTTILKIQTRQTRRPEIGDKFSSRHG 898

Query: 926  QKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSG 985
            QKGV+G L  Q + PF+  G+VPDI++NPH FPSR T G++LE   GK       G+ +G
Sbjct: 899  QKGVVGLLAEQADMPFSDSGVVPDIIMNPHGFPSRMTVGKMLELVSGKA------GVLTG 952

Query: 986  LKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMS 1045
             + Y TPF    V+ +   L + GFS  G + L  G TGE +   +F GP +YQ+L HM 
Sbjct: 953  KQEYGTPFGGSKVEDMGSILVKHGFSYSGKDHLTSGITGESLPFYVFFGPIYYQKLKHMV 1012

Query: 1046 EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQ 1105
            +DK+  R+TGP   LTRQP   R R GG++ GEMERDCLIA+GA+  L ERL   SD++ 
Sbjct: 1013 QDKMHSRSTGPRAILTRQPTEGRSRQGGLRLGEMERDCLIAYGASQLLLERLMISSDAHD 1072

Query: 1106 MHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI- 1164
            + +C+ C             G      +C+ C S   + K  +PY AKLL QEL SM + 
Sbjct: 1073 VDVCQGC-------------GMMGYNGWCQSCGSSRGVTKMTMPYAAKLLIQELMSMNVK 1119

Query: 1165 -TLKFDTEF 1172
             +L+   EF
Sbjct: 1120 ASLQLADEF 1128


>gi|347835281|emb|CCD49853.1| similar to DNA-directed rna polymerase III subunit [Botryotinia
            fuckeliana]
          Length = 1213

 Score =  484 bits (1247), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 361/1208 (29%), Positives = 567/1208 (46%), Gaps = 164/1208 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW-RYASMRFGQ 90
            +F    GLV   I+S+N F+++ ++    +      E   DP       W  Y  +R G+
Sbjct: 95   AFLKVKGLVKQHIDSFNYFVEHEIKDIVKANKRVTSE--VDPKF-----WLEYTDIRVGE 147

Query: 91   VTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
                       +   ++++ P   RL++MTY++ ++V +             K+  GR  
Sbjct: 148  ----PERMDYDDRKPQNEITPNECRLRDMTYAAPIRVDI-------------KYMRGRTI 190

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKV 204
              +K        NI IGR+P+M+KS  C + G          +C  D GGYF++ G EKV
Sbjct: 191  VARK--------NIAIGRMPIMLKSSKCRLAGKNDRQMAHMNECALDPGGYFVVNGTEKV 242

Query: 205  FVAQEQICLKRLWVSNS-----MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
             + QEQ+   R+ +        +  +V   +  ++++  V    M K E I      L  
Sbjct: 243  ILVQEQLSKNRVIIEADPKKGIVSASVTSSTHERKSKSYV----MLKKERIS-----LQH 293

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLI---DFTCEDCSILNILFASIHDADNKCDEFRK 316
              L+  +PI I+  A+G+ SD E++ L+   D   +D   +N   A+      +      
Sbjct: 294  NILTEALPIVIVLKAMGIQSDHELLLLVAGSDERYQDEFSVNFEEATKLGVHTQ------ 347

Query: 317  GRNALKYVDKLIK--GTTFPPG-------------ESTEECMNTYLFPSLHGTKQKARFL 361
               AL+Y+   +K       PG             E+    + T++       + KA ++
Sbjct: 348  -HQALEYIGSRVKMGSRARAPGGGPRSRSYVNDALEALANIIITHVPVVGLDFRPKALYI 406

Query: 362  GYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKR 410
             +MV+ +L A       D+RD   NKRLELAG+LL             +LK++I    K+
Sbjct: 407  CFMVRRVLMAMVNPTLVDDRDYVGNKRLELAGQLLSLLFEDLFKKFNTDLKMNIDKVLKK 466

Query: 411  MAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRA 470
              + ++ D Y              + +T G++RA STG WS    + ER +G+   L R 
Sbjct: 467  PNRGMEFDAYNHMQSH-------GNYITIGMNRAISTGNWSLKRFKMER-AGVTHVLSRL 518

Query: 471  NPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLV 529
            + +  L  + R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL + T + 
Sbjct: 519  SYISALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHIT 578

Query: 530  STSILEPIFEQLFNSGMEKLADDASYSL--GGKFKVFVDGDWIGVCKDSLSFVSELRRKR 587
            +    EP+ +  F  G E +   +   +   G + +FV+G  + + +    F++  R+ R
Sbjct: 579  TYDDEEPVKKLTFVLGAEDIVSMSGKEIYEKGAYVIFVNGTPLALTRQPKKFLNSFRKFR 638

Query: 588  RRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQA 641
            R   +   + I  +   + V I  D GRI RPL++VEN         ++ L      F  
Sbjct: 639  RMGRISEYISIFINHHSTSVHIATDEGRICRPLIIVENQKPKVTKRHLEELRKGTMDFDD 698

Query: 642  LLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFA 701
             L  G++E V   EE D   A    Y+ +          TH E++   +LG   G+IP+ 
Sbjct: 699  FLYKGLLEYVDCNEENDSNIAIRENYINEAT--------THLEIEPFTVLGAVAGLIPYP 750

Query: 702  NHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYG 761
            +H+ + R  YQ      QAIG    N   R+DTL + + YPQ+P+ +T   +        
Sbjct: 751  HHNQSPRNTYQCA-MGKQAIGAIAYNQFSRIDTLLYLMVYPQQPMVKTRTIE-------- 801

Query: 762  HNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKE 821
               ++   +L  GQNA VAV    GY+ ED+LV+N+AS +RG  R +  R Y  ++    
Sbjct: 802  ---LIKYDKLPAGQNATVAVMSFSGYDIEDALVLNKASCDRGFGRCQVFRKYSTQLKKYP 858

Query: 822  MQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHS--- 878
             + + R +D ++  G+    I +   L  DG   +G  + +G++ + K + S  + +   
Sbjct: 859  NRSQDRIADRVI--GENGKPIAKHRILGTDGIALVGERINAGEVYLNKESPSNPNSTGMG 916

Query: 879  ------------IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQ 926
                        +  K  +   + KV+LS  ++      V  RQ R P LGDKFSS HGQ
Sbjct: 917  NDFNLNDMKPAPMGYKLHDHAYIDKVMLSQTENESGVLKVQTRQTRRPELGDKFSSRHGQ 976

Query: 927  KGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGL 986
            KGV+G + +QE+ PF   G+ PDI++NPH FPSR T G++LE   GK       G+ +G 
Sbjct: 977  KGVVGIIVNQEDMPFADSGVTPDIIMNPHGFPSRMTVGKMLELLSGKA------GVINGS 1030

Query: 987  KRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSE 1046
              Y T F   +VD + + L   GFS  G + +  G TGE + + +F GP +YQ+L HM +
Sbjct: 1031 LEYGTCFGGSNVDVMGQILIDNGFSYSGKDFVTSGITGESLPAYVFFGPIYYQKLKHMVQ 1090

Query: 1047 DKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQM 1106
            DK+  R+ GP   LTRQP   R R GG++ GEMERDCLIA+GA+  L ERL   SD++Q+
Sbjct: 1091 DKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMLSSDAHQV 1150

Query: 1107 HICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT- 1165
             IC  C             G      +C+ C S   +    +PY AKLL QE+ SM +  
Sbjct: 1151 DICETC-------------GLMGYSGWCQTCKSSKGVSTMTMPYAAKLLVQEMLSMNVLV 1197

Query: 1166 -LKFDTEF 1172
             LK + EF
Sbjct: 1198 RLKLEDEF 1205


>gi|89274904|gb|ABD65893.1| RNA polymerase II second largest subunit, partial [Spongipellis
            pachyodon]
          Length = 901

 Score =  484 bits (1246), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 311/874 (35%), Positives = 466/874 (53%), Gaps = 82/874 (9%)

Query: 258  SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG 317
            ++ ++  +IPIW++F ALGV SD++I+  I +  +D  +L +L   I D     D     
Sbjct: 55   TIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDNQMLEMLKPCIDDGFVIQDR---- 110

Query: 318  RNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSLH----GTKQKARFLGYMVKCL 368
              AL ++    +GTT            +E +   + P +        +KA F GYM+  L
Sbjct: 111  EVALDFIGN--RGTTTGLNRERRLRYAQEILQKEMLPHISMAEGSESKKAYFFGYMIHRL 168

Query: 369  LQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPI 428
            L A   RR+ D+RD F  KRL+LAG LL    ++      K + + LQ+ +   +    +
Sbjct: 169  LLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFN-L 227

Query: 429  EYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQY 488
               +  + +TNGL  + +TG W    K     +G+   L R     TL  LRR    +  
Sbjct: 228  SLAVKHNTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGR 287

Query: 489  TGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGME 547
             GK+   R  H  HWG +C   TP+G+ CGLVKNL +   +S  S   P+ E L   G+E
Sbjct: 288  EGKIAKPRQLHNHHWGMVCPAETPEGQACGLVKNLSLMSCISVGSFSGPVIEFLEEWGLE 347

Query: 548  KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEV 607
             L ++  +S     KVFV+G W+GV +D ++ V  +++ RR+ ++  +V + RD  + E+
Sbjct: 348  SLEENV-HSPTPTTKVFVNGVWMGVHRDPVNLVKTIKKLRRKDDISPEVSVVRDTREREL 406

Query: 608  RIFMDAGRILRPLLVVEN------MGKIKSLEGK--NYTFQALLDHGIIELVGTEEEED- 658
            RI+ DAGR+ RPL +VE+         I+ LE K  N+ +  ++  GIIEL+  EEEE  
Sbjct: 407  RIYTDAGRVCRPLFIVEDEQLAIKKKHIRMLEDKDSNFAWDDMIKKGIIELLDAEEEETA 466

Query: 659  --CCT-----AWGIKYLLKDIEDKK---PIK-----------FTHCELDMSFLLGLSCGI 697
              C T     A  +     D ED+    P K           +THCE+  S +LG+   I
Sbjct: 467  MICMTPEDLEASRLAGAGMDQEDESEFDPSKRLRTTGSSIHTWTHCEIHPSMILGVCASI 526

Query: 698  IPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGK 757
            IPF +H+ + R  YQS     QA+G   TN   R+DT+++ L+YPQ+PL  T   +    
Sbjct: 527  IPFPDHNQSPRNTYQSAM-GKQAMGIYLTNFLSRMDTMANILYYPQKPLATTRSME---- 581

Query: 758  PGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEV 817
                    L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS + RSY  ++
Sbjct: 582  -------YLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSY-MDL 633

Query: 818  DNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA------ 871
            + K    +    +       ++ K G  D L+DDG    G N+   DI+IGK A      
Sbjct: 634  EKKSGIQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIPPDS 693

Query: 872  ---------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSS 922
                      +  D S  LK TE G+V +V++++N +G+ F  + +R  R P +G KF+S
Sbjct: 694  EELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNAEGQKFVKIGVRSTRVPQIGGKFAS 753

Query: 923  MHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGI 982
             HGQKG +G    QE+ PFT +GI PDIVINPHA PSR T G L+E  L K +A L    
Sbjct: 754  RHGQKGTIGITYRQEDMPFTAEGITPDIVINPHAIPSRMTIGHLVECLLSK-LATL---- 808

Query: 983  CSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLI 1042
             +G +  ATPF   +V+++++ L + G+   G E +Y G TG  +++ +++GPT+YQRL 
Sbjct: 809  -TGQEGDATPFTELTVESVSQYLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLK 867

Query: 1043 HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKF 1076
            HM +DK+  R  GPV  LTRQPV  R R GG++F
Sbjct: 868  HMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 901


>gi|29788820|gb|AAP03366.1| putative RNA polymerase III [Oryza sativa Japonica Group]
          Length = 1174

 Score =  484 bits (1246), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 365/1193 (30%), Positives = 578/1193 (48%), Gaps = 141/1193 (11%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+S+N FI  G++    +     +E   +PS       RY S+R G  
Sbjct: 62   AFLKVRGLVKEHIDSFNYFITKGIRNIVKANNR--IEARNNPSIF----LRYNSVRVGVP 115

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
            ++ +  + A        + P   RL + TYS+ +   +++ V             G++  
Sbjct: 116  SV-QVQYIA------EKITPHFCRLTDRTYSAPVLADIEYTV-------------GKQYE 155

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVF 205
            ++++       N IIG +P+M++S  C + G ++      G+C  D GGYFI+KG EKV 
Sbjct: 156  LKRK------PNFIIGYLPIMLRSHACVLNGKDEAELARYGECPLDPGGYFIVKGTEKVI 209

Query: 206  VAQEQICLKRLWV-SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKV-LSVYFLS 263
            + QEQ+   R+ + ++S G  +A  + +        ++ M K       EK+ L +   +
Sbjct: 210  LIQEQLSKNRIIIDTDSKGRVIASVTSSTHEIKSKTVIFMEK-------EKIYLQLNQFT 262

Query: 264  TEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKY 323
              IPI ++  A+G+ SD+E+  ++     D    ++L+ SI +     +     + AL+Y
Sbjct: 263  KPIPIIVVMKAMGMESDQEVAQMVG---RDPRYGDLLYPSIQEC--AFERIYTQKQALQY 317

Query: 324  VDKLIKGTTFPPGESTEECMNTYLF--------PSLHGT-KQKARFLGYMVKCLLQAYSG 374
            +D  +    +P   + +E  +  +         P   G  + K  +   M++ ++ A   
Sbjct: 318  MDDKV---MYPGAGNQKEGRSKSILRDVFVAHVPVESGNFRPKCIYTAVMLRRMMDAILN 374

Query: 375  RRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDRTVRPIEY 430
                D++D   NKRLEL+G+L+    E   K   ++A + M K  ++      +   +  
Sbjct: 375  ADTFDDKDYVGNKRLELSGQLISLLFEDLFKTMNSNAVELMNKTSEKI---HSSPLDLSL 431

Query: 431  YLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTG 490
            ++  +I+T+GL RA STG W     R  R  G+   L R + + +L  + R   Q + T 
Sbjct: 432  HIKENIITHGLERAISTGNWDIKRFRMHR-KGVSQVLSRLSYMASLGYMTRITPQFEKTR 490

Query: 491  KVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKL 549
            K    R   PS WG +C   TP+GE CGL KNL +   V+T   E P+    ++ G+E L
Sbjct: 491  KTSGPRALQPSQWGMLCPCDTPEGEACGLTKNLALLTHVTTDQEEGPLMNLCYSLGVEDL 550

Query: 550  A--DDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEV 607
            +          G F V  +G  +G  +    F + +R+ RR   +   V I  +E Q  +
Sbjct: 551  SLLSGEEIHASGSFLVMFNGLILGKHRQPQRFANAMRKLRRSGIIGEFVSIFVNEKQHCI 610

Query: 608  RIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCT 661
             I  D GR+ RPL++ +          +K L     +F   L  G+IE +   EE +   
Sbjct: 611  HIASDGGRVCRPLIIADKGIPRVKEHHMKQLRDGIRSFDDFLRDGLIEYLDVNEENNALI 670

Query: 662  AWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAI 721
            A    Y  +D +D +    TH E++   +LG+  G+IP+ +H+ + R  YQ      QA+
Sbjct: 671  AL---YEHEDQDDVQRSSITHIEIEPLTILGVVAGLIPYPHHNQSPRNTYQCAM-GKQAM 726

Query: 722  GFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAV 781
            G    N   R D+L + L Y QRPL  T   + +G    G            GQNA VAV
Sbjct: 727  GNIAYNQLFRADSLLYLLVYAQRPLLTTKTIELVGYDKLG-----------AGQNATVAV 775

Query: 782  NVHLGYNQEDSLVMNRASLERGMFRSEHIRSY-----KAEVDNKEMQVKRRSSDDMVNFG 836
              + GY+ ED++VMN++SL+RG  R   ++ Y     K E    +  VK +   D    G
Sbjct: 776  MSYSGYDIEDAIVMNKSSLDRGFGRCIAMKKYTVTKEKYEGGYSDRIVKPQRDKD----G 831

Query: 837  KIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA------DSGADHS----------IK 880
             +  +  R  +LD+DGF   G  +++ DI + K        DSGA  +           K
Sbjct: 832  ALLKQNMR--ALDEDGFAAPGLIIRNHDIYVNKQTPRNTKRDSGAHLTDRDYKDSPAVYK 889

Query: 881  LKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFP 940
                E  +V +V+L S+ D K      +R  R P +GDKFSS HGQKGV G +  QE+FP
Sbjct: 890  GVDGETTVVDRVMLCSDTDEKLIIKCIIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFP 949

Query: 941  FTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPS--- 997
            F+ +GI PD+++NPH FPSR T G+++E   GK       G+  G   Y + F  PS   
Sbjct: 950  FSERGICPDLIMNPHGFPSRMTIGKMIELLGGKA------GVSCGQFHYGSAFGEPSGNA 1003

Query: 998  --VDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTG 1055
              V+ I+  L + GFS  G + LY G  G   ++ +F+GP +YQ+L HM  DK+  R +G
Sbjct: 1004 DKVEDISRTLVKHGFSYNGKDLLYSGILGHPCQAYVFMGPIYYQKLKHMVLDKMHARASG 1063

Query: 1056 PVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNV 1115
            P   LTRQP   R R GG++ GEMERDCLIA+GA+  + ERL   SD YQ+ +CRKC  +
Sbjct: 1064 PRVLLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFERLLISSDPYQVQVCRKCGLL 1123

Query: 1116 ANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
                        K++  YC +C +G+++ K  +PY  KLL QEL +M +  + 
Sbjct: 1124 GYY-------NHKLKASYCSMCKNGENMAKMRMPYACKLLFQELQAMNVVPRL 1169


>gi|392587347|gb|EIW76681.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Coniophora puteana RWD-64-598 SS2]
          Length = 1143

 Score =  484 bits (1246), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 356/1184 (30%), Positives = 551/1184 (46%), Gaps = 132/1184 (11%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETI--VEPGYDPSKKGEGEWRYASMRFG 89
            +F    GLV   I+S+N F+   ++    +  +    V+P +         W    +++ 
Sbjct: 40   AFLKVKGLVKQHIDSFNYFVDVDIKNIVKANNKVTSDVDPRF---------W----LKYT 86

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
             + +  P     +  D+  + P   RL+++TYS+ + V +Q+                R 
Sbjct: 87   DIHVGFPDRTDLDAIDK-SITPHECRLRDITYSAPILVTIQYT---------------RG 130

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG------DCDFDHGGYFIIKGAEK 203
            + + K        N+ IGR+P+M++S  C + G  +       +C  D GGYF++KG EK
Sbjct: 131  KNVVKR------PNVNIGRLPIMLRSSKCILTGKSEAQLARMTECPLDPGGYFVVKGTEK 184

Query: 204  VFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLS 263
            V + QEQ+   R+ V       V   S        ++      +   K G+  L    + 
Sbjct: 185  VILVQEQLSKNRIIVETDPVKGVVQSSCTSSTHGGLK---SKTYVATKKGKIYLRHNSIH 241

Query: 264  TEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKY 323
             ++PI I   ALG+ SDKEI+ L   T  +     + F++  +   +   F +   AL++
Sbjct: 242  EDVPIVIALKALGIQSDKEILLL---TAGNTEAYKLAFSANLEDAARLGVFTR-HQALEW 297

Query: 324  VDKLIK------GTTFPPGESTEECMNTYLFPSLHGT----KQKARFLGYMVKCLLQAYS 373
            +   +K      G   P  E   E + T +   +       + KA F+  M + +L    
Sbjct: 298  IGTRVKVNRKVVGPRRPAWEEALEALATIVLAHVPVNGLDFRPKAIFVATMTRRVLMCMD 357

Query: 374  GRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDRTVRPIE 429
              +  D+RD   NKRLELAG+LL    E   K    + +  + K L++    +       
Sbjct: 358  DEKMVDDRDYVGNKRLELAGQLLALLFEDLFKTFNTNLKSAIDKVLKKPSRTNEFDAFNT 417

Query: 430  YYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYT 489
                   +T+G  RA STG WS    + ER +G+   L R + +  L  + R   Q + T
Sbjct: 418  MQFQGDHITSGFVRAISTGNWSLKRFKMER-AGVTHVLSRLSFISALGMMTRISSQFEKT 476

Query: 490  GKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEK 548
             KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + E PI    +  G+E 
Sbjct: 477  RKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVEEEPIIRIAYMLGVED 536

Query: 549  LADDASYSLGG--KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSE 606
            ++  +   + G   F V V+G  IG+ +    FV+  RR RR       V +  +     
Sbjct: 537  ISLASGTEIYGPHTFVVNVNGTIIGLTRYPTRFVTNFRRLRRAGRFSEFVGVYVNHHHRT 596

Query: 607  VRIFMDAGRILRPLLVVE------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCC 660
            V I  D GRI RP+++VE      N G I  L+  + +F   L  G++E +   EE D  
Sbjct: 597  VHIASDGGRICRPMIIVEDGRPRVNSGHISLLKQGHLSFDDFLRQGLVEYLDVNEENDSY 656

Query: 661  TAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQA 720
             A          E       TH E++   +LG   G+IP+ +H+ + R  YQ      QA
Sbjct: 657  IAL--------YESDIVATTTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQC-AMGKQA 707

Query: 721  IGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVA 780
            IG    N   R+DTL +   YPQ+P+ +T   + +G              L  GQNA VA
Sbjct: 708  IGAIGYNQFNRIDTLLYLSVYPQQPMVKTKTIELIG-----------YDRLPAGQNATVA 756

Query: 781  VNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSD-DMVNFGKIQ 839
            V  + GY+ ED+L++N+ASL+RG  R + +R     +         R +D  + + G+IQ
Sbjct: 757  VMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLIRKYPNGTFDRLADAPLDDNGQIQ 816

Query: 840  SKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHS---------------IKLKHT 884
             K    D +  DG   +G  +  GD+ + K   + A+ +               +  K  
Sbjct: 817  KK---YDIIQLDGLAGVGERVDPGDVYVNKQTPTNANDNTFTGQAAAVPYKNAPLSYKSP 873

Query: 885  ERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQ 944
              G + K+++S  ++ +    V +RQ R P LGDKFSS HGQKGV G + +QE+ PF  Q
Sbjct: 874  VAGYIDKLMVSDTENDQTLIKVLIRQTRRPELGDKFSSRHGQKGVCGLIVNQEDMPFNDQ 933

Query: 945  GIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQ 1004
            GI PD ++NPH FPSR T G+++E   GK       G+ SG  +Y T F    V+ ++  
Sbjct: 934  GINPDTIMNPHGFPSRMTVGKMIELLSGKA------GVLSGKLQYGTAFGGSKVEDMSRI 987

Query: 1005 LHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQP 1064
            L   GFS  G + L  G TGE++ + ++ GP +YQ+L HM  DK+  R  GP   LTRQP
Sbjct: 988  LIEHGFSYAGKDMLTSGITGELLEAYVYFGPIYYQKLKHMVMDKMHARARGPRATLTRQP 1047

Query: 1065 VADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVG 1124
               R R GG++ GEMERDCLI +GA   L ERL   SD ++++ C++C            
Sbjct: 1048 TEGRSREGGLRLGEMERDCLIGYGATQLLLERLMISSDKFEVNACQEC------------ 1095

Query: 1125 GGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
             G      +C  C S   + K  +PY AKLL QEL +M +  + 
Sbjct: 1096 -GLMGYNGWCPYCKSSKQMAKLTIPYAAKLLFQELMAMNVVPRL 1138


>gi|350420099|ref|XP_003492398.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Bombus
            impatiens]
          Length = 1130

 Score =  484 bits (1246), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 359/1196 (30%), Positives = 562/1196 (46%), Gaps = 159/1196 (13%)

Query: 28   KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMR 87
            K   +F    GLV   I+S+N FI   ++K   +  + + +   DP            ++
Sbjct: 26   KLVPAFLKGKGLVKQHIDSFNYFINVEIKKIIKANEKVLSDA--DP---------LFYVK 74

Query: 88   FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
            +  V +  P    G         P   RL+++ YS+ + V ++             +  G
Sbjct: 75   YLNVHVGLPDVEEG-FNVTRSTTPHECRLRDLNYSAPITVDIE-------------YIRG 120

Query: 148  REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGA 201
             +  I+         N++IGR+P+M++S  C + G       +  +C  D GGYFI+ G 
Sbjct: 121  HQPIIK--------NNLLIGRMPIMLRSSNCVLTGKSHFELSKMNECPHDPGGYFIVNGQ 172

Query: 202  EKVFVAQEQICLKRLWV-SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDI-KGGEKVLSV 259
            EKV + QEQ+   R+ +  +S G  VA  + +   R        +K   + K G   +  
Sbjct: 173  EKVILIQEQMLRNRIILEEDSKGCIVASCNSSTHER-------KTKTNIVGKAGRYYMRH 225

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLI----DF------TCEDCSILNILFASIHDADN 309
                 +IP+ I+F A+G+ SD+EI+ LI    +F      T E+C +LN+       A N
Sbjct: 226  NIFQDDIPVTIIFKAMGIVSDQEIMQLIGTEEEFMKKFAPTLEECHVLNVF------AQN 279

Query: 310  KCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSL----HGTKQKARFLGYMV 365
            +   F   +   K    +    T    +  ++ + T +   +       K KA ++  M+
Sbjct: 280  QALRFLSNKRKQKRYSVIKASVT----DEMKDILATNILSHVPVIDFNFKMKATYIALMI 335

Query: 366  KCLLQAYSGRRKCDNRDDFRNKRLELAGELLER-----------ELKVHIAHARKRMAKA 414
            + +++A S  +  D+RD + NKRLELAG LL             ELK  IA       KA
Sbjct: 336  RKVMKAQSDGKLIDDRDYYGNKRLELAGSLLSLMFEDLFKRFNWELK-QIADKNIPKIKA 394

Query: 415  LQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQ 474
             Q D         I  ++    +TNGL+ A S+G W+    + ER  G+   L R + + 
Sbjct: 395  AQFD---------IVKHMRQDQITNGLAFAISSGNWTIKRFKMER-HGVTQVLSRLSYIS 444

Query: 475  TLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI- 533
             L  + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T I 
Sbjct: 445  ALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEGCGLVKNLALMTHITTEID 504

Query: 534  LEPIFEQLFNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVSELRRKRRRKE 591
             EPI    FN G+E +       +  K  + VF++G+ +G+ K+    V+  R  RR+  
Sbjct: 505  EEPIVRLAFNLGVENVNILGGEEINNKKVYMVFLNGNILGIVKNYQRLVNVFRLLRRKGL 564

Query: 592  LPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMG------KIKSLEGKNYTFQALLDH 645
            +   V I        ++I  D GR+ RP ++V+N         IK LE    +F+  L  
Sbjct: 565  INGFVSIHTQHQHRCIQISSDGGRLCRPYIIVQNGNPLIQEKHIKLLEQGIRSFEDFLQE 624

Query: 646  GIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDH 705
            G+IE +   EE D   A+   ++ +        K TH E++   LLG+  G++P+ +H+ 
Sbjct: 625  GLIEYLDVNEENDSSIAFNESHINE--------KTTHLEIEPFTLLGVCAGLVPYPHHNQ 676

Query: 706  ARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHI 765
            + R  YQ      QA+G    N   R+DTL + L YPQ P+ ++   +           +
Sbjct: 677  SPRNTYQC-AMGKQAMGTIGYNQRNRIDTLMYNLVYPQTPMVKSRTIE-----------L 724

Query: 766  LPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVK 825
            +   +L  GQNA VAV  + GY+ ED+L++N+AS++RG  R    R+ K  +     Q  
Sbjct: 725  INFDKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGFGRCLIYRNAKCTLKRYANQTY 784

Query: 826  RRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSG----------- 874
             R    +++    +  + + D +D DG    G  +++  +++ K + +            
Sbjct: 785  DRIMGPLID-SNTKKPVWKHDIIDSDGIAAPGEMVENRKVMVNKSSPAANIGPVNAGNVQ 843

Query: 875  -----ADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGV 929
                  D  +  K      V+KV++SSN +      + LRQ R P +GDKFSS HGQKGV
Sbjct: 844  TQTEYKDVPVVFKGPVPAYVEKVMISSNAEDAFLIKLLLRQTRRPEIGDKFSSRHGQKGV 903

Query: 930  LGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRY 989
             G +  QE+ PF   GI PD+++NPH FPSR T G+L+E   GK       G+  G   Y
Sbjct: 904  TGLIVEQEDMPFNDYGICPDMIMNPHGFPSRMTVGKLIELLAGKA------GVIKGEFHY 957

Query: 990  ATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKV 1049
             T F    V  +  +L + G++  G +  Y G TGE +++ I+ GP +YQ+L HM +DK+
Sbjct: 958  GTAFGGSKVKDVCNELVKHGYNYLGKDIFYSGITGEPLQAYIYSGPVYYQKLKHMVQDKM 1017

Query: 1050 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHIC 1109
              R  GP   LTRQP   R + GG++ GEMERDCLI +GA+  L ERL   SD++ + +C
Sbjct: 1018 HARARGPRAVLTRQPTEGRAKEGGLRLGEMERDCLIGYGASMMLIERLMISSDAFDVDVC 1077

Query: 1110 RKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
             KC             G      +C  C S   +   ++PY  KLL QEL SM I 
Sbjct: 1078 NKC-------------GLMAYSGWCHSCRSSSCVSTISMPYACKLLFQELQSMNIV 1120


>gi|115453445|ref|NP_001050323.1| Os03g0403100 [Oryza sativa Japonica Group]
 gi|108708688|gb|ABF96483.1| DNA-directed RNA polymerase III 130 kDa polypeptide, putative,
            expressed [Oryza sativa Japonica Group]
 gi|113548794|dbj|BAF12237.1| Os03g0403100 [Oryza sativa Japonica Group]
          Length = 1155

 Score =  484 bits (1246), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 365/1193 (30%), Positives = 578/1193 (48%), Gaps = 141/1193 (11%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+S+N FI  G++    +     +E   +PS       RY S+R G  
Sbjct: 43   AFLKVRGLVKEHIDSFNYFITKGIRNIVKANNR--IEARNNPSIF----LRYNSVRVGVP 96

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
            ++ +  + A        + P   RL + TYS+ +   +++ V             G++  
Sbjct: 97   SV-QVQYIA------EKITPHFCRLTDRTYSAPVLADIEYTV-------------GKQYE 136

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVF 205
            ++++       N IIG +P+M++S  C + G ++      G+C  D GGYFI+KG EKV 
Sbjct: 137  LKRK------PNFIIGYLPIMLRSHACVLNGKDEAELARYGECPLDPGGYFIVKGTEKVI 190

Query: 206  VAQEQICLKRLWV-SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKV-LSVYFLS 263
            + QEQ+   R+ + ++S G  +A  + +        ++ M K       EK+ L +   +
Sbjct: 191  LIQEQLSKNRIIIDTDSKGRVIASVTSSTHEIKSKTVIFMEK-------EKIYLQLNQFT 243

Query: 264  TEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKY 323
              IPI ++  A+G+ SD+E+  ++     D    ++L+ SI +     +     + AL+Y
Sbjct: 244  KPIPIIVVMKAMGMESDQEVAQMVG---RDPRYGDLLYPSIQEC--AFERIYTQKQALQY 298

Query: 324  VDKLIKGTTFPPGESTEECMNTYLF--------PSLHGT-KQKARFLGYMVKCLLQAYSG 374
            +D  +    +P   + +E  +  +         P   G  + K  +   M++ ++ A   
Sbjct: 299  MDDKV---MYPGAGNQKEGRSKSILRDVFVAHVPVESGNFRPKCIYTAVMLRRMMDAILN 355

Query: 375  RRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDRTVRPIEY 430
                D++D   NKRLEL+G+L+    E   K   ++A + M K  ++      +   +  
Sbjct: 356  ADTFDDKDYVGNKRLELSGQLISLLFEDLFKTMNSNAVELMNKTSEKI---HSSPLDLSL 412

Query: 431  YLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTG 490
            ++  +I+T+GL RA STG W     R  R  G+   L R + + +L  + R   Q + T 
Sbjct: 413  HIKENIITHGLERAISTGNWDIKRFRMHR-KGVSQVLSRLSYMASLGYMTRITPQFEKTR 471

Query: 491  KVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKL 549
            K    R   PS WG +C   TP+GE CGL KNL +   V+T   E P+    ++ G+E L
Sbjct: 472  KTSGPRALQPSQWGMLCPCDTPEGEACGLTKNLALLTHVTTDQEEGPLMNLCYSLGVEDL 531

Query: 550  A--DDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEV 607
            +          G F V  +G  +G  +    F + +R+ RR   +   V I  +E Q  +
Sbjct: 532  SLLSGEEIHASGSFLVMFNGLILGKHRQPQRFANAMRKLRRSGIIGEFVSIFVNEKQHCI 591

Query: 608  RIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCT 661
             I  D GR+ RPL++ +          +K L     +F   L  G+IE +   EE +   
Sbjct: 592  HIASDGGRVCRPLIIADKGIPRVKEHHMKQLRDGIRSFDDFLRDGLIEYLDVNEENNALI 651

Query: 662  AWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAI 721
            A    Y  +D +D +    TH E++   +LG+  G+IP+ +H+ + R  YQ      QA+
Sbjct: 652  AL---YEHEDQDDVQRSSITHIEIEPLTILGVVAGLIPYPHHNQSPRNTYQCAM-GKQAM 707

Query: 722  GFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAV 781
            G    N   R D+L + L Y QRPL  T   + +G    G            GQNA VAV
Sbjct: 708  GNIAYNQLFRADSLLYLLVYAQRPLLTTKTIELVGYDKLG-----------AGQNATVAV 756

Query: 782  NVHLGYNQEDSLVMNRASLERGMFRSEHIRSY-----KAEVDNKEMQVKRRSSDDMVNFG 836
              + GY+ ED++VMN++SL+RG  R   ++ Y     K E    +  VK +   D    G
Sbjct: 757  MSYSGYDIEDAIVMNKSSLDRGFGRCIAMKKYTVTKEKYEGGYSDRIVKPQRDKD----G 812

Query: 837  KIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA------DSGADHS----------IK 880
             +  +  R  +LD+DGF   G  +++ DI + K        DSGA  +           K
Sbjct: 813  ALLKQNMR--ALDEDGFAAPGLIIRNHDIYVNKQTPRNTKRDSGAHLTDRDYKDSPAVYK 870

Query: 881  LKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFP 940
                E  +V +V+L S+ D K      +R  R P +GDKFSS HGQKGV G +  QE+FP
Sbjct: 871  GVDGETTVVDRVMLCSDTDEKLIIKCIIRHTRRPEVGDKFSSRHGQKGVCGTIVQQEDFP 930

Query: 941  FTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPS--- 997
            F+ +GI PD+++NPH FPSR T G+++E   GK       G+  G   Y + F  PS   
Sbjct: 931  FSERGICPDLIMNPHGFPSRMTIGKMIELLGGKA------GVSCGQFHYGSAFGEPSGNA 984

Query: 998  --VDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTG 1055
              V+ I+  L + GFS  G + LY G  G   ++ +F+GP +YQ+L HM  DK+  R +G
Sbjct: 985  DKVEDISRTLVKHGFSYNGKDLLYSGILGHPCQAYVFMGPIYYQKLKHMVLDKMHARASG 1044

Query: 1056 PVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNV 1115
            P   LTRQP   R R GG++ GEMERDCLIA+GA+  + ERL   SD YQ+ +CRKC  +
Sbjct: 1045 PRVLLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFERLLISSDPYQVQVCRKCGLL 1104

Query: 1116 ANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
                        K++  YC +C +G+++ K  +PY  KLL QEL +M +  + 
Sbjct: 1105 GYY-------NHKLKASYCSMCKNGENMAKMRMPYACKLLFQELQAMNVVPRL 1150


>gi|119182523|ref|XP_001242390.1| hypothetical protein CIMG_06286 [Coccidioides immitis RS]
 gi|392865284|gb|EAS31067.2| DNA-directed RNA polymerase III polypeptide [Coccidioides immitis RS]
          Length = 1233

 Score =  484 bits (1245), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 369/1210 (30%), Positives = 563/1210 (46%), Gaps = 164/1210 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN F++  L+K   +  E  +    DP+           +RF  +
Sbjct: 113  AFLKVKGLVKQHIDSYNYFVEVQLKKIVQASAE--IRSDVDPN---------FYIRFHDI 161

Query: 92   TLDKPSFFAGNGGD------EHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
             L  P        +      E  + P   RL++MTY++ + V  ++ V  ++RV  +   
Sbjct: 162  YLGSPRRADEEQSEDARFKIESTVTPNECRLRDMTYAAPILVDFEY-VRGRQRVKRN--- 217

Query: 146  TGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIK 199
                                IGR+PVM++S  C +            +C  D GGYFI+ 
Sbjct: 218  -----------------GTAIGRMPVMLRSSKCVLSKKSPREMYLLHECPLDPGGYFIVN 260

Query: 200  GAEKVFVAQEQICLKRLWVSNS-----MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGE 254
            G EKV + QEQ+   R+ V        +  +V   S  ++++  V L         K   
Sbjct: 261  GTEKVILVQEQLSKNRVIVETDPKKEIVQASVTSSSNERKSKSYVIL---------KKDR 311

Query: 255  KVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEF 314
              L    LS +IP+ IL  A+G+ SDKE++ L+       S+    FA   +   K   +
Sbjct: 312  IYLRHNVLSDDIPVVILLKAMGIQSDKEMLLLVAGVD---SVYQEDFAINFEESIKLGIY 368

Query: 315  RKGRNALKYVDKLIKGTTFPPG-------------ESTEECMNTYLFPSLHGTKQKARFL 361
             + + AL+Y+   IK T  P G             E+    + +++       + KA ++
Sbjct: 369  TQ-QQALEYLGSHIKITRKPNGFGGGRRNYIQEAVEAIASVIISHVQVENMNFRPKALYV 427

Query: 362  GYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLER-----------ELKVHIAHARKR 410
             +M + +L A       D+RD   NKRLELAG+LL             ++K++I    K+
Sbjct: 428  AHMARRVLMAKHDSSLVDDRDYVGNKRLELAGQLLALLFEDLFKKFCFDIKMNIDKVLKK 487

Query: 411  MAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRA 470
              +    D +    +         + +T G++RA STG WS    R ER +G+   L R 
Sbjct: 488  PVRTEAFDAFSVVAIH-------GNHITQGMNRAISTGNWSLKRFRMER-AGVTHVLSRL 539

Query: 471  NPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLV 529
            + +  L  + R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL + T + 
Sbjct: 540  SYISALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHIT 599

Query: 530  STSILEPIFEQLFNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVSELRRKR 587
            +    EP+ + +F  G E +         G+  + +F++G  I + +    F++  RR R
Sbjct: 600  TNDEEEPVRKLVFALGAEDVQAVGGREFYGQGAYIIFLNGSPIALTRRPKHFLNSFRRLR 659

Query: 588  RRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQA 641
            R   +   V +  +  QS V I  D GRI RPL++VEN         +  L      F  
Sbjct: 660  RMGRVSEFVSVYINHHQSAVHIATDDGRICRPLIIVENQKSKVTDLHLGMLRNGTMEFDD 719

Query: 642  LLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFA 701
             L  G++E +   EE D   A          E++     TH E++   +LG   G+IP+ 
Sbjct: 720  FLAQGLVEYLDVNEENDSYIAV--------YENEINENTTHLEIEPFTILGAVAGLIPYP 771

Query: 702  NHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYG 761
            +H+ + R  YQ      QAIG    N  +R+D+L + + YPQ+P+ +T   +        
Sbjct: 772  HHNQSPRNTYQC-AMGKQAIGAIANNQFLRIDSLLYTMVYPQKPMVKTRTIE-------- 822

Query: 762  HNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKE 821
               ++   +L  GQ+A VAV  + GY+ ED+LV+N+ S++RG  R +  R Y A + +  
Sbjct: 823  ---LVKYDKLPAGQSATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYSANLKSYS 879

Query: 822  MQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD--------S 873
               K R        G     I +   LD+DG   +G  + SG++ I K           +
Sbjct: 880  NGTKDRLLGPDRQDG---VPIRKHALLDNDGLAAVGEKVSSGEVYINKATPENALSSGIT 936

Query: 874  GADHSIKL---------KHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMH 924
            G+D    +         K  +   + KV++S+ +       V  RQ R P +GDKFSS H
Sbjct: 937  GSDAGGPIAYIPSPQTYKLPDPSYIDKVMISTTEGENQLLKVQTRQTRRPEVGDKFSSRH 996

Query: 925  GQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICS 984
            GQKGV+G +  Q + PFT QGIVPDI++NPH FPSR T G++LE   GK       GI S
Sbjct: 997  GQKGVVGIIAEQADMPFTDQGIVPDIIMNPHGFPSRMTVGKMLELVAGKA------GILS 1050

Query: 985  GLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHM 1044
            G   Y T F    V+ ++  L   GF+  G + L  G TGE + + +F GP +YQ+L HM
Sbjct: 1051 GQFGYGTAFGGSPVEEMSAILISKGFNYGGKDYLTSGITGEALPAYVFTGPIYYQKLKHM 1110

Query: 1045 SEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSY 1104
             +DK+  R  GP   LTRQP   R R GG++ GEMERDCLIA+G +  L ERL   SD +
Sbjct: 1111 VQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDRH 1170

Query: 1105 QMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
            ++ +C  C  +  +              +C+ C +   +VK  +PY AKLL QELFSM +
Sbjct: 1171 EVDVCENCGFMGYL-------------GWCQRCKTSRGVVKMVIPYAAKLLVQELFSMNV 1217

Query: 1165 T--LKFDTEF 1172
               LK   EF
Sbjct: 1218 VARLKLADEF 1227


>gi|406863176|gb|EKD16224.1| DNA-directed RNA polymerase III polypeptide [Marssonina brunnea f.
            sp. 'multigermtubi' MB_m1]
          Length = 1214

 Score =  484 bits (1245), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 376/1208 (31%), Positives = 576/1208 (47%), Gaps = 163/1208 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW-RYASMRFGQ 90
            +F    GLV   I+S+N FI            ET ++     +K+   +  ++  + +  
Sbjct: 98   AFLKVKGLVKQHIDSFNFFI------------ETEIKDIVKANKRVTSDVDQHFFLEYTD 145

Query: 91   VTLDKPSFFAGNGGD-EHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
            V +  P     +  + +  + P   RL+++TY++ ++V +             K+  G+ 
Sbjct: 146  VNIGMPDRVEQDDRNLQRAITPNECRLRDLTYAAPIRVNI-------------KYIRGK- 191

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGAEK 203
            Q I +       T+I IGR+P+M++S  C + G +  D      C  D GGYFI+ G EK
Sbjct: 192  QVIHR-------TDIAIGRLPIMLRSSKCRLSGGDDHDMAHMNECALDPGGYFIVNGTEK 244

Query: 204  VFVAQEQICLKRLWVSNSM-----GWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLS 258
            V + QEQ+   R+ V   +       +V   +  ++++  V L    K E I     VL 
Sbjct: 245  VILVQEQLSKNRVIVETDVKKGIVSASVTSSTHERKSKSYVLL----KKERI-----VLQ 295

Query: 259  VYFLSTEIPIWILFFALGVSSDKEIVNLI---DFTCEDCSILNILFASIHDADNKCDEFR 315
               L+  IPI I   ALG+ SD E++ L+   D T +D       FA   +   K   F 
Sbjct: 296  HNILNEAIPIVIALKALGIQSDHEMLLLVAGTDSTYQDD------FAVNFEECTKMGVFS 349

Query: 316  KGRNALKYVDKLIK-----GTTFPPGESTE-----ECMNTYLFP--SLHGT--KQKARFL 361
            +   AL+++   +K     GT   P          E +++ +     +HG   + KA ++
Sbjct: 350  Q-HQALEWIGTRVKMGSRKGTPGAPQRRNHVADALEALSSIIITHVPVHGLDFRPKALYI 408

Query: 362  GYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKR 410
             +MV+ +L A    +  D+RD   NKRLELAG+LL             +LK++I    K+
Sbjct: 409  CFMVRRVLMANHDPKLVDDRDYVGNKRLELAGQLLSLLFEDLFKKFNSDLKMNIDKVLKK 468

Query: 411  MAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRA 470
              + +Q D +              + +T G++RA STG WS    + ER +G+   L R 
Sbjct: 469  PNRTMQFDAFN-------HLQSHGNHITQGMNRAISTGNWSVKRFKMER-AGVTHVLSRL 520

Query: 471  NPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVS 530
            + +  L  + R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL +   ++
Sbjct: 521  SYISALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHIT 580

Query: 531  TSILE-PIFEQLFNSGMEKLADDASYSL--GGKFKVFVDGDWIGVCKDSLSFVSELRRKR 587
            T+ LE P+ + +F  G E +   +   +   G + VFV+G  + + +    F++  RR R
Sbjct: 581  TNDLEEPVKKLVFVLGAEDIVSMSGKEIYEDGAYVVFVNGTPLALTRKPKVFLNTFRRFR 640

Query: 588  RRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQA 641
            R   +   V I  +   + V I  D GRI RPL++VEN         +++L      F  
Sbjct: 641  RAGRVSAFVSIFINHHTNAVHIATDEGRICRPLIIVENQKSKVTRRSLEALRAGKMDFDD 700

Query: 642  LLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFA 701
             L  G +E V   EE D      I    K+I++      TH E++   +LG   G+IP+ 
Sbjct: 701  FLYRGFVEYVDVNEENDS----NIALYEKEIDETS----THLEIEPFTILGAVAGLIPYP 752

Query: 702  NHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYG 761
            +H+ + R  YQ      QAIG    N   R+DTL + + YPQ+P+ +T   + +      
Sbjct: 753  HHNQSPRNTYQCAM-GKQAIGSIAYNQFSRIDTLLYLMVYPQQPMVKTRTIELI------ 805

Query: 762  HNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKE 821
            H   LP      GQNA VAV  + GY+ ED+LV+N++S +RG  R +  R     +    
Sbjct: 806  HYDKLPA-----GQNATVAVMSYSGYDIEDALVLNKSSCDRGFGRCQVFRKNMISLKKYP 860

Query: 822  MQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKY----------- 870
             +   R  D +++       I +   L  DG   +G  + SG++   K            
Sbjct: 861  NRSYDRIGDRVLDEKDPSKPIAKHRILTSDGIAAVGERIFSGEVFCNKETPLNTISTGIG 920

Query: 871  ADSGADHSIKLKHTERGM----VQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQ 926
            +D G +       + R      + KV+ + ND       V  RQ R P LGDKFSS HGQ
Sbjct: 921  SDYGTNDYKPAPASYRAYDFAYIDKVMTTQNDRDDTIIKVQTRQTRRPELGDKFSSRHGQ 980

Query: 927  KGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGL 986
            KGV+G + +QE+ PF   G+ PDI++NPH FPSR T G++LE   GK       G+ +G 
Sbjct: 981  KGVVGIIVNQEDMPFADSGVCPDIIMNPHGFPSRMTVGKMLELLSGKA------GVLNGT 1034

Query: 987  KRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSE 1046
              Y T F   +VD +   L + GFS  G + +  G TGE + + IF GP +YQ+L HM +
Sbjct: 1035 LEYGTAFGGSNVDDMGAILIKNGFSYSGKDFVTSGITGEPLPAYIFFGPIYYQKLKHMVQ 1094

Query: 1047 DKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQM 1106
            DK+  R+ GP   LTRQP   R R GG++ GEMERDCLIA+GA+  L ERL   SD++++
Sbjct: 1095 DKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMLSSDAHEV 1154

Query: 1107 HICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT- 1165
             IC  C            G    +G +C+ C S   + K  +PY AKLL QE+ SM +  
Sbjct: 1155 DICETC------------GLMGYQG-WCQTCKSTRGVTKMTMPYAAKLLVQEMLSMNVLV 1201

Query: 1166 -LKFDTEF 1172
             LK   EF
Sbjct: 1202 RLKLADEF 1209


>gi|50546993|ref|XP_500966.1| YALI0B16258p [Yarrowia lipolytica]
 gi|49646832|emb|CAG83219.1| YALI0B16258p [Yarrowia lipolytica CLIB122]
          Length = 1169

 Score =  484 bits (1245), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 362/1195 (30%), Positives = 582/1195 (48%), Gaps = 149/1195 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++S+N F+   L+K   +    +V    DP    E   +Y  +R G  
Sbjct: 54   AFLKVKGLVKQHLDSFNYFVDVDLKKILAA--NQMVLSDVDP----EFYLKYKDIRVG-- 105

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
               KP     +  D++ +FP   RL++MTY++ + V ++   YT++R          +  
Sbjct: 106  ---KPGIKFDDKNDDNAIFPHECRLRDMTYAAPIYVDIE---YTKER----------KIV 149

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWM------KGVEKGDCDFDHGGYFIIKGAEKVF 205
            IQ+        N+ IG++P+M++S  C +      K    G+C  D GGYFI+ G EKV 
Sbjct: 150  IQR--------NLEIGKMPIMLRSSKCHLQDQTEEKMAAMGECPLDPGGYFIVNGTEKVI 201

Query: 206  VAQEQICLKRLWVSNS-----MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVY 260
            + QEQ+   R+ V        +  +V   +  +R++  V    ++K + I      L   
Sbjct: 202  LVQEQLSKNRIIVEADEKKGVVQASVTSSTHERRSKTYV----LTKNDKI-----YLKNN 252

Query: 261  FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNA 320
             +  +IPI ++  A G+ +D EI+  +        +   +FA   +  +K   F + R A
Sbjct: 253  SIVEDIPIVLILKAAGLVTDLEIMQAV---AGQNPVYQEIFAVNFEECSKLGVFTQ-RQA 308

Query: 321  LKYVDKLIKG--------TTFPPG-ESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQA 371
            L+Y+   +K         T +  G E+    +  ++  +     +KA ++  M + ++ A
Sbjct: 309  LEYLGSKVKTSRRSNVKLTHYQEGLEAVATSIIAHISINNMDFTEKALYIAVMTRRVIMA 368

Query: 372  YSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDRTVRP 427
             +  +  D+RD   NKRLELAG+LL    E   K   +  +  + K L+R          
Sbjct: 369  MADPKMIDDRDYVGNKRLELAGQLLSLLFEDLFKKFNSDFKANIDKILKRPNRASMFDAL 428

Query: 428  IEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQ 487
            +        +T+G++RA STG WS    + ER +G+   L R + +  L  + R   Q +
Sbjct: 429  LNLETHRGSITSGMNRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALGMMTRISSQFE 487

Query: 488  YTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGM 546
             + KV   R   PS +G +C   TP+GE CGLVKNL +   ++T   E P+    +  G 
Sbjct: 488  KSRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTDDEEAPVRNLCYLLGA 547

Query: 547  EKLA--DDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQ 604
            E ++    A     G F V+++G  IG+ K    FVS  R+ RR  ++   + I  +   
Sbjct: 548  ENISVIGGAELHAEGSFGVYLNGTLIGITKFPTKFVSSFRQFRRTGKVSEFISIYINRHH 607

Query: 605  SEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEED 658
            + V I  D GRI RPL++VEN      +  +K L     TF   L  G++E +   EE D
Sbjct: 608  AAVHIATDGGRICRPLIIVENEHPRVQVEHLKKLRDGEMTFDDFLKQGLVEYLDVNEEND 667

Query: 659  CCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSS 718
               A          E+    + TH E++   +LG   G+IP+ +H+ + R  YQ      
Sbjct: 668  SFIAL--------YENNINAETTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQC-AMGK 718

Query: 719  QAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAI 778
            QAIG    N   R+DTL + + YPQ+P+ +T   +           ++   +L  GQNA 
Sbjct: 719  QAIGAIAYNQLNRIDTLLYLMVYPQQPMVKTRTIE-----------LIDYDKLPAGQNAT 767

Query: 779  VAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKA------------EVDNKEMQVKR 826
            VAV  + GY+ ED+LV+N++S++RG  R + ++                 +D  +M+ +R
Sbjct: 768  VAVMSYSGYDIEDALVLNKSSIDRGFGRCQVLKKNTTVLKRYAGSDAVDRLDGVKME-RR 826

Query: 827  RSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGK-----YADSGADHS--- 878
            + + D  +F ++ ++   V  L  DG   +G  +++  + + +      +DS  + S   
Sbjct: 827  KCAWDPNSFEEVVTEQHEV--LGPDGLGEVGKPVKNSQVYVNRCIPVNNSDSLLNQSTSS 884

Query: 879  --------IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVL 930
                    +  +  E  ++ KV++S  D       V LRQ R P LGDKFSS HGQKGV 
Sbjct: 885  STEYREAPVTYRGPEPSIIDKVMVSVTDKELYLIKVLLRQTRRPELGDKFSSRHGQKGVC 944

Query: 931  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYA 990
            G + +QE+ PF+  G+ PDI++NPH FPSR T G+++E   GK       G+  G  +Y 
Sbjct: 945  GIIVNQEDMPFSDSGVCPDIIMNPHGFPSRMTVGKMIELISGKA------GVLDGSLQYG 998

Query: 991  TPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVK 1050
            T F    ++ +++ L   G+S  G + LY G +GE +++ IF GP +YQ+L HM  DK+ 
Sbjct: 999  TCFGGSKLEDMSKILVDHGYSYSGKDMLYSGTSGECLQAYIFFGPIYYQKLKHMVMDKMH 1058

Query: 1051 FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICR 1110
             R  GP   LTRQP   R R GG++ GEMERDC+IA+GA+  L ERL   SD+++  +C+
Sbjct: 1059 ARPRGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMYSSDAFEADVCQ 1118

Query: 1111 KCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
            KC            G    +G +C  C +   +VK  +PY AKLL QEL SM I 
Sbjct: 1119 KC------------GLLGYQG-WCNSCQTTAHVVKMTLPYAAKLLFQELVSMNIA 1160


>gi|303319249|ref|XP_003069624.1| DNA-directed RNA polymerase III, putative [Coccidioides posadasii
            C735 delta SOWgp]
 gi|240109310|gb|EER27479.1| DNA-directed RNA polymerase III, putative [Coccidioides posadasii
            C735 delta SOWgp]
 gi|320040958|gb|EFW22891.1| DNA-directed RNA polymerase 3 subunit RPC2 [Coccidioides posadasii
            str. Silveira]
          Length = 1197

 Score =  484 bits (1245), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 369/1210 (30%), Positives = 563/1210 (46%), Gaps = 164/1210 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN F++  L+K   +  E  +    DP+           +RF  +
Sbjct: 77   AFLKVKGLVKQHIDSYNYFVEVQLKKIVQASAE--IRSDVDPN---------FYIRFHDI 125

Query: 92   TLDKPSFFAGNGGD------EHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
             L  P        +      E  + P   RL++MTY++ + V  ++ V  ++RV  +   
Sbjct: 126  YLGSPRRADEEQSEDARFKIESTVTPNECRLRDMTYAAPILVDFEY-VRGRQRVKRN--- 181

Query: 146  TGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIK 199
                                IGR+PVM++S  C +            +C  D GGYFI+ 
Sbjct: 182  -----------------GTAIGRMPVMLRSSKCVLSKKSPREMYLLHECPLDPGGYFIVN 224

Query: 200  GAEKVFVAQEQICLKRLWVSNS-----MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGE 254
            G EKV + QEQ+   R+ V        +  +V   S  ++++  V L         K   
Sbjct: 225  GTEKVILVQEQLSKNRVIVETDPKKEIVQASVTSSSNERKSKSYVIL---------KKDR 275

Query: 255  KVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEF 314
              L    LS +IP+ IL  A+G+ SDKE++ L+       S+    FA   +   K   +
Sbjct: 276  IYLRHNVLSDDIPVVILLKAMGIQSDKEMLLLVAGVD---SVYQEDFAINFEESIKLGIY 332

Query: 315  RKGRNALKYVDKLIKGTTFPPG-------------ESTEECMNTYLFPSLHGTKQKARFL 361
             + + AL+Y+   IK T  P G             E+    + +++       + KA ++
Sbjct: 333  TQ-QQALEYLGSHIKITRKPNGFGGGRRNYIQEAVEAIASVIISHVQVENMNFRPKALYV 391

Query: 362  GYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLER-----------ELKVHIAHARKR 410
             +M + +L A       D+RD   NKRLELAG+LL             ++K++I    K+
Sbjct: 392  AHMARRVLMAKHDSSLVDDRDYVGNKRLELAGQLLALLFEDLFKKFCFDIKMNIDKVLKK 451

Query: 411  MAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRA 470
              +    D +    +         + +T G++RA STG WS    R ER +G+   L R 
Sbjct: 452  PVRTEAFDAFSVVAIH-------GNHITQGMNRAISTGNWSLKRFRMER-AGVTHVLSRL 503

Query: 471  NPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLV 529
            + +  L  + R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL + T + 
Sbjct: 504  SYISALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHIT 563

Query: 530  STSILEPIFEQLFNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVSELRRKR 587
            +    EP+ + +F  G E +         G+  + +F++G  I + +    F++  RR R
Sbjct: 564  TNDEEEPVRKLVFALGAEDVQAVGGREFYGQGAYIIFLNGSPIALTRRPKHFLNSFRRLR 623

Query: 588  RRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQA 641
            R   +   V +  +  QS V I  D GRI RPL++VEN         +  L      F  
Sbjct: 624  RMGRVSEFVSVYINHHQSAVHIATDDGRICRPLIIVENQKSKVTDLHLGMLRNGTMEFDD 683

Query: 642  LLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFA 701
             L  G++E +   EE D   A          E++     TH E++   +LG   G+IP+ 
Sbjct: 684  FLAQGLVEYLDVNEENDSYIAV--------YENEINENTTHLEIEPFTILGAVAGLIPYP 735

Query: 702  NHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYG 761
            +H+ + R  YQ      QAIG    N  +R+D+L + + YPQ+P+ +T   +        
Sbjct: 736  HHNQSPRNTYQC-AMGKQAIGAIANNQFLRIDSLLYTMVYPQKPMVKTRTIE-------- 786

Query: 762  HNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKE 821
               ++   +L  GQ+A VAV  + GY+ ED+LV+N+ S++RG  R +  R Y A + +  
Sbjct: 787  ---LVKYDKLPAGQSATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYSANLKSYS 843

Query: 822  MQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD--------S 873
               K R        G     I +   LD+DG   +G  + SG++ I K           +
Sbjct: 844  NGTKDRLLGPDRQDG---VPIRKHALLDNDGLAAVGEKVSSGEVYINKATPENALSSGIT 900

Query: 874  GADHSIKL---------KHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMH 924
            G+D    +         K  +   + KV++S+ +       V  RQ R P +GDKFSS H
Sbjct: 901  GSDAGGPIAYIPSPQTYKLPDPSYIDKVMISTTEGENQLLKVQTRQTRRPEVGDKFSSRH 960

Query: 925  GQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICS 984
            GQKGV+G +  Q + PFT QGIVPDI++NPH FPSR T G++LE   GK       GI S
Sbjct: 961  GQKGVVGIIAEQADMPFTDQGIVPDIIMNPHGFPSRMTVGKMLELVAGKA------GILS 1014

Query: 985  GLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHM 1044
            G   Y T F    V+ ++  L   GF+  G + L  G TGE + + +F GP +YQ+L HM
Sbjct: 1015 GQFGYGTAFGGSPVEEMSAILISKGFNYGGKDYLTSGITGEALPAYVFTGPIYYQKLKHM 1074

Query: 1045 SEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSY 1104
             +DK+  R  GP   LTRQP   R R GG++ GEMERDCLIA+G +  L ERL   SD +
Sbjct: 1075 VQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDRH 1134

Query: 1105 QMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
            ++ +C  C  +  +              +C+ C +   +VK  +PY AKLL QELFSM +
Sbjct: 1135 EVDVCENCGFMGYL-------------GWCQRCKTSRGVVKMVIPYAAKLLVQELFSMNV 1181

Query: 1165 T--LKFDTEF 1172
               LK   EF
Sbjct: 1182 VARLKLADEF 1191


>gi|358396944|gb|EHK46319.1| hypothetical protein TRIATDRAFT_132468 [Trichoderma atroviride IMI
            206040]
          Length = 1157

 Score =  484 bits (1245), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 386/1212 (31%), Positives = 569/1212 (46%), Gaps = 166/1212 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN F+++ +++   +   TI       S      W    + F  +
Sbjct: 37   AFLKVKGLVKQHIDSYNFFVEHEIKEIVRA-NRTI------RSDVDSNFW----LEFTDI 85

Query: 92   TLDKPSFFAGNGG-DEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
             +D+P     N     +++ P   RL++MTY++ + V + +          DK K  R+ 
Sbjct: 86   RVDRPRRLDYNDSKSRNEVTPMECRLRDMTYAAPIFVDIAY--------IRDKQKIVRK- 136

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGAEKV 204
                        N+ +GR+PVM+KS  C + G    +      C  D GGYFI+ G EKV
Sbjct: 137  ------------NVPLGRMPVMLKSCKCRLSGANNSEMEKMNECPLDPGGYFIVNGTEKV 184

Query: 205  FVAQEQICLKRLWV-----SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
             + QEQ+   R+ V     +N +  +V   +  ++++  V L         K  + VL+ 
Sbjct: 185  ILIQEQLSKNRVIVEADEKNNVISASVTSSTHERKSKTYVTL---------KKDKIVLTH 235

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLI---DFTCEDCSILNILFASIHDADNKCDEFRK 316
              L   IPI I+  ALG  SD EI+ L+   D   +D  ++N       D   K   F +
Sbjct: 236  NILVEGIPIVIILKALGGLSDYEIMQLVAGSDGRYQDEFLVNF------DEAAKAGIFTQ 289

Query: 317  GRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQ---------------KARFL 361
               AL+Y+   +K  +   G+   +     +   L                    KA ++
Sbjct: 290  -HQALEYIGSRVKMGS-RRGQFGAQARRNNVEEGLDALANLIIAHVPIEGLDFYPKAIYV 347

Query: 362  GYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQR 417
              M + +L A    +  D+RD   NKRLELAG+LL    E   K  +   +  + K L++
Sbjct: 348  AMMTRRVLMASQDNKLVDDRDFVGNKRLELAGQLLSLLFEDLFKRFMGEVKMSIDKFLKK 407

Query: 418  DLYGDRTVRPIEYYLDASILTN----GLSRAFSTGAWSHPFKRTERISGIVANLGRANPL 473
            +   +R V P++     S   N    G++RA  +G WS       R +G+   L R + +
Sbjct: 408  N---NRAV-PLDAVHMISNHANSIGLGINRAIQSGNWSVKRFNMNR-AGVTHVLSRLSYI 462

Query: 474  QTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI 533
              L  + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T++
Sbjct: 463  SALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTNV 522

Query: 534  LE-PIFEQLF--NSGMEKLAD--DASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRR 588
             E P+   +F  + G+E + +   A     G + + V+G    + +    F    R  RR
Sbjct: 523  EEDPVKRWIFTLDVGVEPIRNFSGAEMHREGSYIIHVNGTPFALTRYPKRFTHRFRTMRR 582

Query: 589  RKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQA 641
            R  +   V I  +   + + I  D GRI RP ++V+N GK       ++ L+    TF  
Sbjct: 583  RGWISPFVGIHTNSHFNAIHIATDEGRICRPYIIVKN-GKQKLKPEHLRLLQMGKVTFDD 641

Query: 642  LLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFA 701
             L  GI+E +   EE D         L+   ED+  +  TH E++   LLG   G+IPF 
Sbjct: 642  FLTKGIVEYLDVNEENDA--------LITIYEDQVTMSTTHLEIEPFTLLGAVAGLIPFP 693

Query: 702  NHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYG 761
            +H+ + R  YQ      QAIG    N   R+DTL + L YPQRP+  T     +      
Sbjct: 694  HHNQSPRNTYQCAM-GKQAIGAIAHNQFNRIDTLLYTLVYPQRPMVITKTIQLI------ 746

Query: 762  HNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKE 821
            H   LP      GQNA V V  + GY+ ED+LV+N+AS++RG  R +  R Y  E+  K 
Sbjct: 747  HYDKLP-----AGQNATVVVMSYSGYDIEDALVLNKASIDRGFGRCQVFRKYTTEL-QKY 800

Query: 822  MQVKRRSSDDMVNF--GKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA-------- 871
               +R    D VN     +  +I + ++LD DG   +G  + SG+ ++ K          
Sbjct: 801  PNGRRERVGDPVNEVENGVMRRIKKHEALDADGLAIVGQRIHSGEAMVKKETPLDMTTTG 860

Query: 872  ---DSGA----DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMH 924
               D G     D ++  +  +   + KV++S  +       V  RQ R P LGDKFSS H
Sbjct: 861  IGLDRGPSEYRDTAVSYRIADPAYIDKVMISQTEKDTTVIKVQTRQTRRPELGDKFSSRH 920

Query: 925  GQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICS 984
            GQKGV+G +  QE+ PF   G+ PDI++NPH FPSR T G+LLE   GK        I  
Sbjct: 921  GQKGVVGIIVDQEDMPFADSGLCPDIIMNPHGFPSRMTVGKLLECLTGKA------SIVH 974

Query: 985  GLKRYA--TPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLI 1042
            G K Y     F +  V  ++E L   GFS  G +    G TGE + + IF GP +YQRL 
Sbjct: 975  GRKDYGFGDAFRSHPVQQVSEVLVDNGFSWEGKDYFTSGITGEPLEAYIFNGPIYYQRLK 1034

Query: 1043 HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSD 1102
            HM +DK+  R  GP   LTRQP   R R GG++ GEMERDCLIA+GA+  L ERL   SD
Sbjct: 1035 HMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMLSSD 1094

Query: 1103 SYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSM 1162
               + IC++C            G    +G YC  C S  D+ K  +PY AKLL QEL SM
Sbjct: 1095 GTMIDICQQC------------GLFGYKG-YCSTCKSTRDVTKMQMPYAAKLLVQELISM 1141

Query: 1163 --GITLKFDTEF 1172
              G+ L+ + EF
Sbjct: 1142 NVGVRLQLEDEF 1153


>gi|209489360|gb|ACI49130.1| hypothetical protein Cbre_JD16.002 [Caenorhabditis brenneri]
 gi|341883892|gb|EGT39827.1| hypothetical protein CAEBREN_00456 [Caenorhabditis brenneri]
          Length = 1152

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 366/1213 (30%), Positives = 574/1213 (47%), Gaps = 174/1213 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETI--VEPGYDPSKKGEGEWRYASMRFG 89
            +F    GLV   + S++ F+   ++    S  +      P +          +Y  +R G
Sbjct: 33   AFLKVRGLVKQHLVSFDHFVNEEIRNIMLSNQKITSDANPNF--------YLKYLDIRVG 84

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
                  PS   G       + P+  RL++MTYS+ + V +++    Q+ +  D       
Sbjct: 85   T-----PSSEEGLNMTHDKITPQECRLRDMTYSAPISVDIEYTRGNQRVLKKD------- 132

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV-EKG-----DCDFDHGGYFIIKGAEK 203
                          +IIGR+P+M++S  C ++ + E+G     +C +D GGYF++KG+EK
Sbjct: 133  --------------LIIGRMPIMLRSSKCILRDLAEEGLARVQECPYDPGGYFVVKGSEK 178

Query: 204  VFVAQEQICLKRLWV----SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            V + QEQ+   R+ V    S  +   V   +  ++++  V          +K G+ ++  
Sbjct: 179  VILIQEQLSKNRIMVGRNSSKELQCEVLSSTSERKSKTYV---------TVKKGKYLVRH 229

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
              L+ ++P+ I+F A+G+ SD +IV+ I     +   ++    +I +  N        + 
Sbjct: 230  NQLTDDVPVSIIFKAMGIESDYDIVSTIG---HEEKYVSAFAQTIEECINA--GVYTQQQ 284

Query: 320  ALKYVDKLIKGTTF---------------PPGEST-----EECMNTYLFPSLHGTKQKAR 359
            AL YV   +K   F               PP E          M T++       K KA 
Sbjct: 285  ALAYVTSKVKARKFTPFGSLPGTSVSVLTPPKEHEAVDFLSNSMITHIACPDGNFKMKAI 344

Query: 360  FLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKAL 415
            +LG M + L+Q   G  + D+RD + NKRLELAG LL    E   K   +  ++    AL
Sbjct: 345  YLGQMTRRLIQTELGENELDDRDFYGNKRLELAGSLLALLFEDVFKRFNSELKRIADNAL 404

Query: 416  QRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQT 475
             + +        I  ++   ++TN +  A STG W     R ER+ G+   L R + +  
Sbjct: 405  MKTMAAPLD---IVKHMRQDMITNTIVNAMSTGNWIIKRFRMERL-GVTQVLSRLSYISA 460

Query: 476  LVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SIL 534
            L  + R     + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T S  
Sbjct: 461  LGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALISHITTDSDE 520

Query: 535  EPIFEQLFNSGMEKLADDASYSLGGKFK---VFVDGDWIGVCKDSLSFVSELRRKRRRKE 591
            +P+   L NSG+E L ++  +S   K +   +F++G  IG   D    V  +R  RR   
Sbjct: 521  KPVLRLLLNSGVEDL-NNVHFSHINKPENTLIFLNGVLIGTAVDPERVVRAVRDLRRSGL 579

Query: 592  LPTQVEIKRDELQSEVRIFMDAGRILRPLLVV---------ENMGKIKSLEGKNYTFQAL 642
            L   V + R      V I  D GR+ RP ++V         EN+ ++K  EGK   F+  
Sbjct: 580  LSEFVSVSRSITNRSVFISSDGGRLCRPYIIVKDGKPMLTQENVTELK--EGKR-IFEDF 636

Query: 643  LDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFAN 702
            +D GI+E +   E  D         L+   E++  ++ TH E++   LLG+  G+IP+ +
Sbjct: 637  VDDGIVEYLDVNEMNDA--------LIAVYENEIGLETTHLEIEPFTLLGVCAGLIPYPH 688

Query: 703  HDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGH 762
            H+ + R  YQ      QA+G    N   R+D++ + L YPQRPL ++   +         
Sbjct: 689  HNQSPRNTYQCA-MGKQAMGTIAYNQQKRIDSIMYLLCYPQRPLVKSKTIE--------- 738

Query: 763  NHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRS---EHIRSYKAEVDN 819
              ++   +L  G N I+AV  + GY+ ED+LV+N+ASL+RG  R    +H++    +  N
Sbjct: 739  --LINFEKLPAGANGIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHVKGTARKYPN 796

Query: 820  KEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKY--------- 870
            +        + D +     +  I +  +LD +G  F GA +     +I K+         
Sbjct: 797  QTFDRLLGPALDPIT----KKPIMKHKNLDKEGIVFAGARILPKQTIINKHMPVVSGDNN 852

Query: 871  -ADSGA-------------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCL 916
             A + A             D S+  K       ++V+L+ N++  +   V LRQ R P L
Sbjct: 853  PASASANTIGIAGRQVDYKDVSVTYKTPTPSYAERVLLTYNEEEAHLFKVLLRQTRRPEL 912

Query: 917  GDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIA 976
            GDKFSS HGQKGV G +  QE+ PF   G+VPD+++NPH +PSR T G+L+E   GK   
Sbjct: 913  GDKFSSRHGQKGVCGLIAQQEDMPFNDLGMVPDMIMNPHGYPSRMTVGKLMELLSGKA-- 970

Query: 977  ALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPT 1036
                G+ +G   Y T F    V  + E+L   G++  G + L  G TG+ + + I+ GP 
Sbjct: 971  ----GVMNGTYHYGTAFGGDQVKDVCEELAARGYNYMGKDMLTSGITGQPLSAYIYFGPI 1026

Query: 1037 FYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHER 1096
            +YQ+L HM  DK+  R  GP   LTRQP   R R GG++ GEMERDCLIA+GA+  L ER
Sbjct: 1027 YYQKLKHMVLDKMHARARGPRAALTRQPTEGRSREGGLRLGEMERDCLIAYGASMLLIER 1086

Query: 1097 LFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLC 1156
            L   SD +++ +C  C         V+G     +G +C+ C S   +    +PY  KLL 
Sbjct: 1087 LMVSSDEFKVDVCTGCG--------VIGS----KG-WCQKCRSSKSMANIKIPYACKLLF 1133

Query: 1157 QELFSMGITLKFD 1169
            QEL SM I  + D
Sbjct: 1134 QELQSMNIVPRLD 1146


>gi|321468089|gb|EFX79076.1| hypothetical protein DAPPUDRAFT_305037 [Daphnia pulex]
          Length = 1134

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 370/1208 (30%), Positives = 558/1208 (46%), Gaps = 164/1208 (13%)

Query: 28   KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMR 87
            K   +F    GLV   I+SYN FI   ++K                 K  E    ++   
Sbjct: 27   KLVPAFLKTKGLVKQHIDSYNYFINVDIKKIV---------------KANEKVVSHSDQT 71

Query: 88   FGQVTLDKPSFFAGNGGDEHDM------FPRHARLQNMTYSSRMKVKVQFQVYTQKRVTS 141
            F    LD      G      DM       P   RL++MTYS+ + V +++    Q+R+  
Sbjct: 72   FYIKYLD---IHVGKPDSIEDMNHSRLTTPHECRLRDMTYSAPVTVDIEY-TRGQQRIVR 127

Query: 142  DKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGY 195
            +                     I IGR+P+M++S  C + G+      +K +C +D GGY
Sbjct: 128  N--------------------GIPIGRMPIMLRSSNCTLAGISPAEMAKKNECPYDCGGY 167

Query: 196  FIIKGAEKVFVAQEQICLKRLWVSN----SMGWTVAYKSENKRNRLIVRLVDMSKFEDIK 251
            FI++G EKV + QEQ+   R+ V      +M   V   +   + R  V          + 
Sbjct: 168  FIVRGNEKVILIQEQMSKNRMIVEQDRKGNMSCQVTSSTHGTKTRTNVV---------VN 218

Query: 252  GGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKC 311
             G+  L       +IP+ I+F A+G+ SD+EIV +I     D  ++     S+ +   + 
Sbjct: 219  KGKYYLKQNSFQDDIPVAIVFKAMGIVSDQEIVQMIG---TDDRVMTSFAPSLEEC-VRA 274

Query: 312  DEFRKGRNALKYVDKLIKGTTF---PPGESTEECMNTYLFPSLHGT-------KQKARFL 361
              F + + AL ++   ++   F   P   +TEE   T     L          K KA +L
Sbjct: 275  SIFTQ-QQALGHLGNKLRQKRFFGGPKKTATEEARETLATTILAHVPVENFNFKAKAMYL 333

Query: 362  GYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYG 421
              M++ ++QA +     D+RD + NKRLELAG LL     +      KRM   L++    
Sbjct: 334  ALMIRRVIQAENDPTSVDDRDYYGNKRLELAGSLLS----LLFEDLFKRMNFELKQ--IA 387

Query: 422  DRTVRPIEY-------YLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQ 474
            D+ +  I+        ++    +TNGL  A STG W+    R +R  G+   L R + + 
Sbjct: 388  DKNIPKIKAAQFDVIKHIRTDHITNGLENAISTGNWTIKRFRMDR-QGVTQMLCRLSYIS 446

Query: 475  TLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLVSTSI 533
             L  + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL + T + + + 
Sbjct: 447  GLGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEGCGLVKNLALMTHITTEAE 506

Query: 534  LEPIFEQLFNSGME--KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKE 591
             EPI     N G+E   L      S    + VF++G+ +G+ KD L  +   +  RR   
Sbjct: 507  EEPISRIAQNMGVEDINLFSGEEISDPSIYTVFLNGNILGLVKDYLRLIRYFKLARRHGF 566

Query: 592  LPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLD 644
            +   V I        V I  D GR+ RP ++V   GK       ++ L     TF+  + 
Sbjct: 567  INAFVSIYPHFQTRSVYISSDGGRLCRPYIIVRK-GKAALTDKHMQELADSFRTFEDFIH 625

Query: 645  HGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHD 704
             G+IE +   EE D      I     DI ++     TH E++   LLG+  G+IP+ +H+
Sbjct: 626  DGLIEYLDVNEENDS----NIAVYESDINEET----THLEIEPFTLLGVCAGLIPYPHHN 677

Query: 705  HARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNH 764
             + R  YQ      QA+G    N   R+DTL + L YP +P+ +T   +           
Sbjct: 678  QSPRNTYQC-AMGKQAMGTIACNQRNRIDTLLYNLVYPHKPMVKTRTIE----------- 725

Query: 765  ILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQV 824
            ++    L  GQNA+VAV  + G++ ED+ V+N+ASL+RG  R    ++ K  +     Q 
Sbjct: 726  LINFENLPAGQNAMVAVMSYSGFDIEDATVLNKASLDRGYGRCLVYKNAKCALKRYNNQS 785

Query: 825  KRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA--------- 875
              R +  +++    +  I + D LD DGF  +G  ++   ++I K   +           
Sbjct: 786  SDRVNGPILDAAS-KKPIWKHDILDADGFAAVGQPVEPKQVLINKAMPTAPVVTVAPGAP 844

Query: 876  ---------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQ 926
                     D  I  K      V+KV+ SSN +  +   + LRQ R P +GDKFSS HGQ
Sbjct: 845  AAVPLPEYRDVPIAYKGAIPSYVEKVMFSSNAEEAHIIKIQLRQTRRPEIGDKFSSRHGQ 904

Query: 927  KGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGL 986
            KGV   +  QE+ PFT  GI PD+++NPH FPSR T G+L+E   GK       G+  G 
Sbjct: 905  KGVTALVAEQEDLPFTELGICPDVIMNPHGFPSRMTVGKLIELLAGKA------GLLEGK 958

Query: 987  KRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSE 1046
              Y T F    V  ++E+L + G++  G E +  G TGE + + I+ GP +YQ+L HM  
Sbjct: 959  FHYGTAFGGSKVQDVSEELIKHGYNYQGKECMTSGTTGEQLSAYIYFGPVYYQKLKHMVM 1018

Query: 1047 DKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQM 1106
            DK+  R+ GP   LTRQP   R R GG++ GEMERDCLIA+G++  + ERL   SD++ +
Sbjct: 1019 DKMHARSRGPRAVLTRQPTEGRAREGGLRLGEMERDCLIAYGSSMLILERLMISSDAFDV 1078

Query: 1107 HICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT- 1165
             +C +C             G      +C  C S   +    +PY  KLL QEL +M I  
Sbjct: 1079 DVCNQC-------------GLMGYFGWCHYCKSSASVSSIRIPYACKLLFQELQAMNIAP 1125

Query: 1166 -LKFDTEF 1172
             LK D  F
Sbjct: 1126 RLKLDKYF 1133


>gi|240276965|gb|EER40475.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H143]
          Length = 1227

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 368/1214 (30%), Positives = 566/1214 (46%), Gaps = 174/1214 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN F++  L+K   +  E  +    DP+           +RF  +
Sbjct: 109  AFLKIKGLVKQHIDSYNYFVEVQLKKIVQASAE--IRSDVDPN---------FYIRFHDI 157

Query: 92   TLDKPSFFAGNGGDEHDMF----PRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
             L  P         + D+     P   RL++MTY++ + V  ++ V  ++RV  +     
Sbjct: 158  YLGNPRRADEEQDSKFDLASTITPNECRLRDMTYAAPILVDFEY-VRGRQRVKRN----- 211

Query: 148  REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGA 201
                              IGR+PVM++S  C +    + +      C  D GGYFI+ G 
Sbjct: 212  ---------------GTAIGRMPVMLRSSKCVLSNKSEAEMQLLQECPLDPGGYFIVNGT 256

Query: 202  EKVFVAQEQICLKRLWVSNSMGWTVAYKS------ENKRNRLIVRLVDMSKFEDIKGGEK 255
            EKV + QEQ+   R+ V   +   +   S      E K    I+          +K    
Sbjct: 257  EKVILVQEQLSKNRVIVETDLKKEIVQASVTSSSNERKSKSYII----------LKKDRI 306

Query: 256  VLSVYFLSTEIPIWILFFALGVSSDKEIVNL---IDFTCEDCSILNILFASIHDADNKCD 312
             +    LS ++PI IL  A+G+ SDKE++ L   ID T ++       FA   +   K  
Sbjct: 307  YMRHNVLSEDVPIVILLKAMGIQSDKEMLLLVAGIDSTFQED------FAINFEESVKLS 360

Query: 313  EFRKGRNALKYVDKLIKGTTFPPG-------------ESTEECMNTYLFPSLHGTKQKAR 359
             + +   AL+Y+   IK    P               E+    + +++       + KA 
Sbjct: 361  IYTQ-HQALEYIGSRIKINRKPNSFGITRRNHVQEAIEAISSVIISHVVVENLNFRPKAL 419

Query: 360  FLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL-----------ERELKVHIAHAR 408
            ++ +M + +L A       D+RD   NKRLELAG+LL           + ++K++I    
Sbjct: 420  YVAHMARRVLMAKHDPSLVDDRDYVGNKRLELAGQLLALLFEDLFKKFQFDIKMNIDKVL 479

Query: 409  KRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLG 468
            K+  +  Q D YG   +         + +T G++RA STG WS    R ER +G+   L 
Sbjct: 480  KKPVRTEQFDAYGVVAIH-------GNHITQGMNRAISTGNWSLKRFRMER-AGVTHVLS 531

Query: 469  RANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TG 527
            R + +  L  L R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL + T 
Sbjct: 532  RLSYIAALGMLTRISSQFEKTRKVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTH 591

Query: 528  LVSTSILEPIFEQLFNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVSELRR 585
            + +    EP+ + +F  G E +       L G+  + +F++G  I + +    F++  RR
Sbjct: 592  ITTNDEEEPVRKLIFALGAEDVQTVGGRELHGQGAYIIFLNGSPIALTRRPKFFLNSFRR 651

Query: 586  KRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYT 638
             RR   +   + +  +  Q+ V +  D GRI RPL++VE+ GK       ++ L      
Sbjct: 652  LRRTGRVSEFISVFINHHQNAVHVATDDGRICRPLIIVED-GKSKVTNRHLRLLRNGTME 710

Query: 639  FQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGII 698
            F   L HG++E +   EE D   A          E+      TH E++   +LG   G+I
Sbjct: 711  FDDFLAHGLVEYLDCNEENDSYIAV--------YEEDITQSTTHLEIEPFTILGAVAGLI 762

Query: 699  PFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKP 758
            P+ +H+ + R  YQ      QAIG    N  +R+D+L + + YPQ+P+ +T   +     
Sbjct: 763  PYPHHNQSPRNTYQCAM-GKQAIGVIANNQFLRIDSLLYTMVYPQKPMVKTRTIE----- 816

Query: 759  GYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVD 818
                  ++   +L  GQ+A VAV  + GY+ ED+LV+N+ S++RG  R +  R Y   + 
Sbjct: 817  ------LIKYDKLPAGQSATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYSTNLK 870

Query: 819  NKEMQVKRR-SSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD----- 872
            +     K +    D  N   I+        LD+DG   +G  +  G++ I K        
Sbjct: 871  SYSNGTKDKLKGPDRENGVPIRKHA----LLDNDGLAAVGEKVNYGEVYINKVTPENALS 926

Query: 873  ---SGADHSIKL---------KHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKF 920
               +G+D    +         K  +   + KV++S+ +       V  RQ R P +GDKF
Sbjct: 927  SGITGSDAGRPIAYIPSPQTYKLPDPSYIDKVMISATEAENQLIKVQTRQTRVPEVGDKF 986

Query: 921  SSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGK 980
            SS HGQKGV+G +    + PF+  GIVPDI++NPH FPSR T G++LE   GK       
Sbjct: 987  SSRHGQKGVVGIIAEHADMPFSDLGIVPDIIMNPHGFPSRMTVGKMLELIAGKA------ 1040

Query: 981  GICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQR 1040
            GI SG   Y T F    V+ ++  L   GFS  G + L  G TGE + + +F+GP +YQ+
Sbjct: 1041 GILSGQFGYGTAFGGSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLPAYVFMGPIYYQK 1100

Query: 1041 LIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTL 1100
            L HM +DK+  R  GP   LTRQP   R R GG++ GEMERDCLIA+G +  L ERL   
Sbjct: 1101 LKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMIS 1160

Query: 1101 SDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELF 1160
            SD +++ +C  C  +  +              +C+ C +   +VK  +PY AKLL QELF
Sbjct: 1161 SDRHEVDVCENCGFMGYL-------------GWCQRCKTSRGVVKMVIPYAAKLLVQELF 1207

Query: 1161 SMGIT--LKFDTEF 1172
            SM +   LK   EF
Sbjct: 1208 SMNVVARLKLADEF 1221


>gi|83282218|ref|XP_729674.1| DNA-directed RNA polymerase, subunit beta [Plasmodium yoelii yoelii
            17XNL]
 gi|23488130|gb|EAA21239.1| DNA-directed RNA polymerase, beta subunit, putative [Plasmodium
            yoelii yoelii]
          Length = 1323

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 374/1237 (30%), Positives = 575/1237 (46%), Gaps = 199/1237 (16%)

Query: 38   GLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPS 97
            GLV   I SYN FIK  ++   ++    I++   D          +  + F  +++ +PS
Sbjct: 167  GLVKQHIESYNYFIKREIKTIMNATTNKIIKSDID---------EHFYLEFLDISVGRPS 217

Query: 98   FFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVL 157
                    E ++ P+  R +++TYS+ + V V++ +     VT +               
Sbjct: 218  I--EENMIESNLTPQICRQRDLTYSAPIYVDVEY-IKGNSIVTKN--------------- 259

Query: 158  SDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQI 211
                 N+ IGR+PVM++SD+C +        ++ G+C +D GGYFI+KG E+V + QEQ+
Sbjct: 260  -----NVEIGRLPVMLRSDICVLNNKNENELMKLGECPYDPGGYFIVKGTERVLLMQEQL 314

Query: 212  CLKRLWVS-----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEI 266
               R+ V      N      +  +E+K    IV           K  +  L     + +I
Sbjct: 315  SKNRIIVEMDIKHNICATITSTTAESKSRCAIV----------YKNNKLYLKHNSFTEDI 364

Query: 267  PIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDK 326
             + I+  A+G  SD+EI  +I         LN +  S++D     +  +   +AL Y+ K
Sbjct: 365  GVCIILRAMGYESDQEIFQMIG---SHKMYLNGILLSLYDL--YTENIKTNLDALLYIGK 419

Query: 327  LIKGTTFPPG-----------------ESTEECMNTYLFP-----SLHGTKQKARFLGYM 364
             I+      G                 E   + ++  L       S +  + KAR +  M
Sbjct: 420  KIRPRLLAKGFFSSMKEKQVKNEKDIIEEGLDFLSRVLLSHIQQKSKYDFRNKARCICLM 479

Query: 365  VKCLLQAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDL- 419
            ++ +L + + + + D++D + NKRLELAG+L+    E   K      +K++ + L + + 
Sbjct: 480  IRRVLDSANNKNELDDKDYYGNKRLELAGQLISLLFEDLYKRFYFTLKKQIDQTLSKYMQ 539

Query: 420  ------------------YGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERIS 461
                              + D +   +   L   I+T G+  A STG W+    + E+ S
Sbjct: 540  SSYNSKLKNNSSIGGNNNFSDNSYPDVFRNLPKDIITRGMQTAISTGNWNIKRFKMEK-S 598

Query: 462  GIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVK 521
            G+   L R + +  +  + R   Q +   KV   R   PS WG +C   TP+GE+CGLVK
Sbjct: 599  GVSQVLSRLSFIACIGMMTRLNSQFEKGRKVSGPRALQPSQWGVLCPCDTPEGESCGLVK 658

Query: 522  NLGVTGLVS--TSILEPIFEQLFNSGME---KLADDASYSLGGKFKVFVDGDWIGVCKDS 576
            NL +   V+      E + E L+  G+E    L  +  Y   G F V ++G  +GV +  
Sbjct: 659  NLALMTHVTNDNDNNENLIEILYTLGVEDSDSLTGEEMYK-EGVFFVVLNGILLGVHRKP 717

Query: 577  LSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------I 629
              F+  +R  RR  ++   V I  + L + + I  D GR+ RPL++VEN GK       I
Sbjct: 718  HKFMKRIRCLRRFGKIGEFVSIYDNFLHNAIYISTDGGRLCRPLIIVEN-GKSKLLNSHI 776

Query: 630  KSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSF 689
            K+LE     F  LL   +IE +   E+ +   A       KDI     +  TH E+D   
Sbjct: 777  KALESGEINFFDLLKSSVIEWIDVNEQNNLLIALN----EKDIN----LNTTHLEIDPLT 828

Query: 690  LLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRT 749
            +LG+  G+IP+ NH+ + R  YQ      QAIG    N  IR DTL + L YPQ+PL ++
Sbjct: 829  ILGVVAGLIPYPNHNQSPRNTYQCA-MGKQAIGSIGYNQFIRCDTLLYLLIYPQKPLVKS 887

Query: 750  MISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEH 809
               +            +   +L  GQNAIV+V    GY+ ED++VMN++S++RG  R   
Sbjct: 888  KTIE-----------FINFEKLPAGQNAIVSVMSFCGYDIEDAIVMNKSSIDRGFGRCMS 936

Query: 810  IRSYKAEV-------------------DNKEMQVK--RRSSDDMVNFGK-----IQSKIG 843
            +R +  E+                     ++MQ K  + S+D++ N  +     I S++ 
Sbjct: 937  LRKHFIELKKYFNGSNDIVLPSPLSISKQQQMQKKTGKESNDNLANTKEDPRKTINSELK 996

Query: 844  RVDSLDDDGFPFIGANLQSGDIVIGKYADSGA-DH---------------SIKLKHTERG 887
            +  SLD DG   IG  L+ G + + KY+     DH                +K K     
Sbjct: 997  KYHSLDADGVVSIGYLLKEGQVYVNKYSPINVKDHVKDMSKLDLNDFKLSEVKYKSVYPS 1056

Query: 888  MVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIV 947
             V K++ + N +G     + +RQ R P LGDKFSS HGQKGV+G L +QE+ PFT  GI 
Sbjct: 1057 YVDKIIFTENGEGLKIYKIIMRQSRLPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGIC 1116

Query: 948  PDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHR 1007
            PD+++NPH FPSR T G+LLE    K        +  G  +Y + F+    +   E L R
Sbjct: 1117 PDLIMNPHGFPSRMTVGKLLELVSSKS------AVLDGEYKYGSIFSGTPFEEAAEVLFR 1170

Query: 1008 AGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVAD 1067
             GF+    E LY G TGE + + IF+GP +YQ+L HM +DK+  R+ GP   LTRQP   
Sbjct: 1171 YGFNWSCKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIHARSRGPRQLLTRQPTEG 1230

Query: 1068 RKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGR 1127
            R + GG++ GEMERDCLIA+G +  L ERL   SD    +IC  C             G 
Sbjct: 1231 RSKEGGLRLGEMERDCLIAYGVSNLLLERLMLSSDVCDAYICEDC-------------GM 1277

Query: 1128 KVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
                  C  C   D  V   +PY  KLL QEL +M +
Sbjct: 1278 MGYDSCCTFCKKYDKNVVVKMPYACKLLFQELQTMNV 1314


>gi|327300783|ref|XP_003235084.1| DNA-directed RNA polymerase III [Trichophyton rubrum CBS 118892]
 gi|326462436|gb|EGD87889.1| DNA-directed RNA polymerase III [Trichophyton rubrum CBS 118892]
          Length = 1210

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 374/1220 (30%), Positives = 565/1220 (46%), Gaps = 187/1220 (15%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN F++  L+K   S  E  +    DP            ++F  +
Sbjct: 93   AFLKVKGLVKQHIDSYNYFVEVQLRKIVQSSAE--IRSDIDPK---------FYIKFHDI 141

Query: 92   TLDKPSFF----AGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
             L  P       +G   D   + P   RL++MTY++ + V  ++ V  ++RV  +     
Sbjct: 142  YLGTPRRTDEEQSGIKADS-TITPNECRLRDMTYAAPILVDFEY-VRGRQRVKRN----- 194

Query: 148  REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGA 201
                              IGR+PVM++S  C +            +C  D GGYFI+ G 
Sbjct: 195  ---------------GTAIGRMPVMLRSSKCVLSNKSAREMYTLHECPLDPGGYFIVNGT 239

Query: 202  EKVFVAQEQICLKRLWVSNSMGWTVAYKS------ENKRNRLIVRLVDMSKFEDIKGGEK 255
            EKV + QEQ+   R+ V       +   S      E K    I+          +K G  
Sbjct: 240  EKVILVQEQLSKNRVIVETDPKKEIVQASVTSSSHERKSKSYII----------MKKGRI 289

Query: 256  VLSVYFLSTEIPIWILFFALGVSSDKEIVNL---IDFTCEDCSILNILFA---SIHDADN 309
             L    L+ +IPI IL  A+G+ SDKE++ L   +D   ++   +N   A   SI+    
Sbjct: 290  YLRHNVLNDDIPIVILLKAMGIQSDKEMLLLVAGVDMEYQEDFAINFEEAVKLSIYTQ-- 347

Query: 310  KCDEFRKGRNALKYVDKLI----KGTTFPPG---------ESTEECMNTYLFPSLHGTKQ 356
                    + AL+Y+   I    K + F P          E+    + +++       + 
Sbjct: 348  --------QQALEYLGARIKINRKASGFGPARRNYVAEAIEAISSVIISHVQVQDMNFRP 399

Query: 357  KARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLER-----------ELKVHIA 405
            KA ++ +M + +L A       D+RD   NKRLELAG+LL             ++K++I 
Sbjct: 400  KALYVTHMARRVLMAKLDPSLVDDRDYVGNKRLELAGQLLALLFEDLFKKFCFDIKMNID 459

Query: 406  HARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVA 465
               K+  +    D Y      P+   +  + +T G++RA +TG WS    R ER +G+  
Sbjct: 460  KVLKKPVRTEAFDAY------PV-VAIHGNHITQGMNRAIATGNWSLKRFRMER-AGVTH 511

Query: 466  NLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV 525
             L R + +  L  + R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL +
Sbjct: 512  VLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLAL 571

Query: 526  -TGLVSTSILEPIFEQLFNSGMEKLADDASYSLGGK-------FKVFVDGDWIGVCKDSL 577
             T + +    EP+ + +F  G E +      ++GG+       + VF++G  I + +   
Sbjct: 572  MTHITTNDEEEPVQKLVFTLGAEDIQ-----TVGGRECFGQGAYIVFMNGSPIALTRRPK 626

Query: 578  SFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE------NMGKIKS 631
             F++  RR RR   +   V +  +  Q  V +  D GRI RPL++VE          + +
Sbjct: 627  YFLNAFRRLRRMGRISEFVSVFINHNQKCVHVSTDDGRICRPLIIVEKKRSRVTARHLSA 686

Query: 632  LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLL 691
            L      F   L +G++E V   EE D   A          E +     TH E++   +L
Sbjct: 687  LRNGTMDFDDFLSNGLVEYVDVNEENDANIAV--------YEREIDANTTHLEIEPFTVL 738

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G   G+IP+ +H+ + R  YQ      QAIG    N  +R+D+L + + YPQ+P+ +T  
Sbjct: 739  GAVAGLIPYPHHNQSPRNTYQC-AMGKQAIGAIANNQFLRIDSLLYAMVYPQKPMVKTRT 797

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
             +           +    +L  GQNA+VAV  + GY+ ED+LV+N+ S++RG  R +  R
Sbjct: 798  IE-----------LTNYDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFR 846

Query: 812  SYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA 871
             Y A + +     K R        G    K G    LD+DG   +G  +  G++ I K  
Sbjct: 847  KYSANLKSYSNGTKDRLVGPTRENGVSIRKHGL---LDNDGLAAVGEKVSPGEVYINKET 903

Query: 872  D--------SGADHSIKLKHT---------ERGMVQKVVLSSNDDGKNFSVVSLRQVRSP 914
                     +G+D  + +K+          +   + KV++S+ +       V  RQ R P
Sbjct: 904  PDNALSSGITGSDAGLPVKYNPTPQTYKLPDYSYIDKVMISTTEGESQLIKVQTRQTRRP 963

Query: 915  CLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKG 974
             +GDKFSS HGQKGV+G +  Q + PFT  G+VPDI++NPH FPSR T G++LE   GK 
Sbjct: 964  EVGDKFSSRHGQKGVVGIIAEQADMPFTDTGLVPDIIMNPHGFPSRMTVGKMLELVAGKA 1023

Query: 975  IAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIG 1034
                  GI SG   Y TPF    V+ ++  L   GFS  G + L  G TGE +   +F G
Sbjct: 1024 ------GIISGQFGYGTPFGGSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLTYYVFTG 1077

Query: 1035 PTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLH 1094
            P +YQ+L HM +DK+  R  GP   LTRQP   R R GG++ GEMERDCLIA+G +  L 
Sbjct: 1078 PIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLL 1137

Query: 1095 ERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKL 1154
            ERL   SD +++ +C  C             G      +C+ C S   +VK  +PY AKL
Sbjct: 1138 ERLMISSDRHEVDVCESC-------------GFMGYSGWCQRCKSSVGVVKMVIPYAAKL 1184

Query: 1155 LCQELFSMGIT--LKFDTEF 1172
            L QELFSM +   L+   EF
Sbjct: 1185 LVQELFSMNVVARLRLQDEF 1204


>gi|312086795|ref|XP_003145218.1| RNA polymerase III 128kD subunit-PA [Loa loa]
          Length = 1040

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 344/1072 (32%), Positives = 526/1072 (49%), Gaps = 130/1072 (12%)

Query: 164  IIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGAEKVFVAQEQICLKRLW 217
            ++IG++PVM++S  C +K + + +      C +D GGYFII+G+EKV + QEQ+   R+ 
Sbjct: 25   LVIGKMPVMLRSSKCVLKNMNESELAHVQECPYDPGGYFIIRGSEKVVLIQEQLSKNRIM 84

Query: 218  VSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV---YF-----LSTEIPIW 269
            +             N +  L   +  +S  ++ K    + S    Y+     LS ++P+ 
Sbjct: 85   IG-----------RNSKKELQCEI--LSSTQERKSKTYIASKKQRYYVRHNQLSDDVPVA 131

Query: 270  ILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIK 329
            I+F A+G  SD +IV+ +     +   +  +  SI +  +     ++G  AL+Y+   +K
Sbjct: 132  IVFKAMGFESDHDIVSAVGL---EEKFVAAMAPSIEECASHQIVTQEG--ALQYIASKVK 186

Query: 330  GTTFPP------------GESTEECMNTYL--FPSLHGT-KQKARFLGYMVKCLLQAYSG 374
               F P             E+ +   N  +   P   G  K KA +LG M++ L+QA  G
Sbjct: 187  MRKFGPFASGTSSTLPREHEAIDFLSNLMIAHVPCPDGNMKMKAIYLGLMIRRLMQAEVG 246

Query: 375  RRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQR---DLYGDRTVRPIEY- 430
              +CD+RD + NKRLELAG LL     +      KR    L+R   +  G     P++  
Sbjct: 247  DTECDDRDFYGNKRLELAGSLL----ALLFEDVFKRFNSELKRIADNSLGKTLAAPLDIV 302

Query: 431  -YLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYT 489
             ++   ++TN L  A +TG W+    + ER  G+   L R + +  L  + R     + T
Sbjct: 303  KHMRQDLITNALVDALATGNWTIKRFKMER-QGVTQVLSRLSYISVLGMMTRINSTFEKT 361

Query: 490  GKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEK 548
             KV   R   PS WG +C   TP+GE+CGLVKNL +   ++T S  EP+   L+NSG+E 
Sbjct: 362  RKVSGPRSLQPSQWGMLCPSDTPEGESCGLVKNLALISHITTDSDEEPVIRLLYNSGVED 421

Query: 549  LADDASYSLGGKFK--VFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSE 606
            +      ++       VF++G  +G+  D    VS +R  RR   L   V +  +  Q  
Sbjct: 422  VKSLHFSAIHSPVYHIVFLNGVIVGLTIDPQRIVSTIRAVRRHGLLNEFVSVSTNAAQRS 481

Query: 607  VRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCC 660
            V I  D GR+ RP ++V+N         I+ L+     F+  +D G+IE +   E  D  
Sbjct: 482  VYIASDGGRLCRPYIIVKNGVPQVTQEHIEELKKGCRIFEDFVDDGLIEYLDVNEMNDAS 541

Query: 661  TAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQA 720
             A          E++     TH E++   LLG+  G+IP+ +H+ + R  YQ      QA
Sbjct: 542  IAV--------YENQIKPNTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-AMGKQA 592

Query: 721  IGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVA 780
            +G    N   R+D+L + L YPQRPL +T   +      + +   LP      GQNA++A
Sbjct: 593  MGTIGYNQQKRIDSLMYLLVYPQRPLVKTKTIE------FCNFEKLPA-----GQNAVIA 641

Query: 781  VNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQS 840
            V  + GY+ ED+LV+N+ASL+RG  R    +  KA       Q   R     V     + 
Sbjct: 642  VMSYSGYDIEDALVLNKASLDRGYGRCLVYKHAKATARKYPNQTFDRLMGPTVE-ATTRK 700

Query: 841  KIGRVDSLDDDGFPFIGANLQSGDIVIGKY-----ADSGA-------------------D 876
             I +   LD +G  ++GA + S  ++I K+      ++GA                   D
Sbjct: 701  PIYKHQVLDQEGIVYVGACIHSKQVMINKHMPVVSTEAGATTSSNNDGTNVSSHEVEYKD 760

Query: 877  HSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ 936
             S+  ++      ++V+L+ N+D  +   V LRQ R P LGDKFSS HGQKGV G +  Q
Sbjct: 761  VSVVYRNPVPSYAERVLLTYNEDDAHLIKVLLRQTRRPELGDKFSSRHGQKGVCGLIAQQ 820

Query: 937  ENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP 996
            E+ PF   G+ PD+++NPH +PSR T G+L+E   GK        + SG   Y T F   
Sbjct: 821  EDMPFNDLGMCPDMIMNPHGYPSRMTVGKLMELLSGK------NAVLSGKFHYGTAFGGD 874

Query: 997  SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGP 1056
             VD + E+L   GF+  G + L  G TG+ + + I+ GP +YQ+L HM  DK+  R  GP
Sbjct: 875  QVDVVCEELAARGFNYLGKDMLTSGITGQQLCAYIYFGPIYYQKLKHMVLDKMHARARGP 934

Query: 1057 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVA 1116
               LTRQP   R R GG++ GEMERDCLIA+GA+  L ERL   SD +++ +C +C  + 
Sbjct: 935  RAVLTRQPTEGRARDGGLRLGEMERDCLIAYGASMLLMERLMVSSDEFKVDVCSQCGLIG 994

Query: 1117 NVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
                         +G +C++C S   +    +PY  KLL QEL SM I  K 
Sbjct: 995  ------------YKG-WCQMCRSSRTMATIKIPYACKLLFQELQSMNIVPKI 1033


>gi|410907712|ref|XP_003967335.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
            [Takifugu rubripes]
          Length = 1132

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 376/1188 (31%), Positives = 561/1188 (47%), Gaps = 145/1188 (12%)

Query: 28   KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYAS 85
            K   +F    GLV   I+S+N FI   ++K   +  E I     DP       W  +Y +
Sbjct: 28   KLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKA-NEKITSDA-DPM------WYLKYLN 79

Query: 86   MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
            +  G   +++ SF          + P   RL++MTYS+ + V +++              
Sbjct: 80   IYVGMPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEY-------------- 119

Query: 146  TGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIK 199
            T   Q I +  L        IGR+P+M++S  C + G       +  +C  D GGYFI+K
Sbjct: 120  TRGSQRIIRNALP-------IGRMPIMLRSSNCVLTGKTPMEFAKLNECPLDPGGYFIVK 172

Query: 200  GAEKVFVAQEQICLKRLWVSN----SMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEK 255
            G EKV + QEQ+   R+ V      ++G +V   +  K++R      +M     +K G  
Sbjct: 173  GQEKVILIQEQLSKNRIIVDQDRKGAVGASVTSSTHEKKSR-----TNMI----VKQGRF 223

Query: 256  VLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFR 315
             L    LS + PI I+F  +GV SD+EIV +I    ED  + +  FA   +   K   F 
Sbjct: 224  YLRHNTLSEDAPIAIIFKGMGVESDQEIVQMIG--TEDYVMAS--FAPSLEECQKAQIFT 279

Query: 316  KGRNALKYVDKLIKGTTF---PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAY 372
            + + AL+Y+   ++       P     EE     L  SL  T    +   +  KC+  A 
Sbjct: 280  QTQ-ALRYLGNKVRRQRMWGGPKKTKMEEARE--LLASLILTHVPVKEFNFRAKCIYLAV 336

Query: 373  SGRR--------KCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRT 424
              RR        K D+RD + NKRLELAG+LL    +         + K   + +   R 
Sbjct: 337  MVRRVILAQGGNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSELKKIADQIIPKQRA 396

Query: 425  VR-PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTR 483
             +  +  ++    +TNG+  A STG WS    + +R  G+   L R + +  L  + R  
Sbjct: 397  AQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDR-QGVTQVLSRLSFISALGMMTRIS 455

Query: 484  QQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLF 542
             Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + + PI +  F
Sbjct: 456  SQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAF 515

Query: 543  NSGMEKL----ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEI 598
            N G+E +     ++ SY     F VF++G+ +GV +D    V   R  RR   +   V I
Sbjct: 516  NLGVEDVNLLCGEELSYP--SVFIVFLNGNILGVIRDHQKLVGTFRLMRRAGFINEFVSI 573

Query: 599  KRDELQSEVRIFMDAGRILRPLLVVEN---MGKIKSLE--GKNY-TFQALLDHGIIELVG 652
              +     V I  D GR+ RP ++V+    M K K +E   + Y  F+  L  G++E + 
Sbjct: 574  STNLTDRCVYISSDGGRLCRPYIIVKKGQPMVKNKHIEDLSQGYRNFEDFLHDGLVEYLD 633

Query: 653  TEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 712
              EE DC  A     + KD         TH E++   LLG+  G+IP+ +H+ + R  YQ
Sbjct: 634  VNEENDCQIALYEHMIHKDT--------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQ 685

Query: 713  SQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELY 772
                  QA+G    N   R+DTL + L YPQRP+ +T   +           I+   +L 
Sbjct: 686  C-AMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIE-----------IIEFEKLP 733

Query: 773  NGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDM 832
             GQNA VAV  + GY+ ED+L++N+ASL+RG  R    ++ K  +     Q   +    M
Sbjct: 734  AGQNATVAVMSYSGYDIEDALILNKASLDRGFGRCLVYKNSKCTLRRYTNQTFDKVMGPM 793

Query: 833  VNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA----------------D 876
            ++    +  I R + LD DG    G  +++  +++ K   +                  D
Sbjct: 794  LD-AATRKPIWRHNILDADGICSPGERVENKQVLVNKSMPTVTQTPLEGSTQTGQPQYRD 852

Query: 877  HSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ 936
              I  K +    ++KV++SSN +      + LRQ R P +GDKFSS HGQKGV G +  Q
Sbjct: 853  VPICYKGSTDSYIEKVMISSNAEDAFLIKILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQ 912

Query: 937  ENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP 996
            E+ PF   GI PDI++NPH +PSR T G+L+E   GK       G+  G   Y T F   
Sbjct: 913  EDMPFCDTGICPDIIMNPHGYPSRMTVGKLIELLAGKA------GVLDGRFHYGTAFGGS 966

Query: 997  SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGP 1056
             V  + E L R G++  G + +  G TGE + + I+ GP +YQ+L HM  DK+  R  GP
Sbjct: 967  KVKDVCEDLIRHGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGP 1026

Query: 1057 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVA 1116
               LTRQP   R R GG++ GEMERDCLI +GA+  L ERL   SD++++ +C +C    
Sbjct: 1027 RAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQC---- 1082

Query: 1117 NVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
                     G      +C  C S   +    +PY  KLL QEL SM I
Sbjct: 1083 ---------GLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNI 1121


>gi|261194511|ref|XP_002623660.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces dermatitidis
            SLH14081]
 gi|239588198|gb|EEQ70841.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces dermatitidis
            SLH14081]
          Length = 1204

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 372/1218 (30%), Positives = 570/1218 (46%), Gaps = 182/1218 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN F++  L+K   +  E  +    DP+           +RF  +
Sbjct: 86   AFLKVKGLVKQHIDSYNYFVEVQLKKIVQASAE--IRSDVDPN---------FYIRFHDI 134

Query: 92   TLDKPSFFAGNGGDEHD--------MFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDK 143
             L  P        +E D        + P   RL++MTY++ + V  ++ V  ++RV  + 
Sbjct: 135  YLGNPR----RADEEQDSKFDVASTITPNECRLRDMTYAAPILVDFEY-VRGRQRVKRN- 188

Query: 144  FKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFI 197
                                  IGR+PVM++S  C +    + +      C  D GGYFI
Sbjct: 189  -------------------GTAIGRMPVMLRSSKCVLSNKSEAEMQLLHECPLDPGGYFI 229

Query: 198  IKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKS------ENKRNRLIVRLVDMSKFEDIK 251
            + G EKV + QEQ+   R+ V   +   +   S      E K    I+          +K
Sbjct: 230  VNGTEKVILVQEQLSKNRVIVETDLKKEIVQASVTSSSNERKSKSYII----------MK 279

Query: 252  GGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNL---IDFTCEDCSILNILFASIHDAD 308
                 +    L+ ++PI IL  A+G+ SDKE++ L   ID T ++   +N   A      
Sbjct: 280  KDRIYMRHNVLNEDVPIVILLKAMGIQSDKEMLLLVAGIDSTYQEDFSINFEEAV----- 334

Query: 309  NKCDEFRKGRNALKYVDKLIKGTTFPPG-------------ESTEECMNTYLFPSLHGTK 355
             K   + +   AL+Y+   IK    P               E+    + +++       +
Sbjct: 335  -KLGIYTQ-HQALEYIGSRIKINRKPNSFGITRRNHVQEAIEAISSVIISHVVVENLNFR 392

Query: 356  QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL-----------ERELKVHI 404
             KA ++ +M + +L A       D+RD   NKRLELAG+LL           + ++K++I
Sbjct: 393  PKALYVAHMARRVLMAKHDPSLVDDRDYVGNKRLELAGQLLALLFEDLFKKFQFDIKMNI 452

Query: 405  AHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIV 464
                K+  +  Q D YG   +         + +T G++RA STG WS    R ER +G+ 
Sbjct: 453  DKVLKKPVRTEQFDAYGVVAIH-------GNHITQGMNRAISTGNWSLKRFRMER-AGVT 504

Query: 465  ANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLG 524
              L R + +  L  + R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL 
Sbjct: 505  HVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLA 564

Query: 525  V-TGLVSTSILEPIFEQLFNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVS 581
            + T + +    EP+ + +F  G E +       L G+  + +F++G  I + +    F++
Sbjct: 565  LMTHITTNDEEEPVRKLIFALGAEDVQTVGGRELHGQGAYIIFLNGSPIALTRRPKFFLN 624

Query: 582  ELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIK-------SLEG 634
              RR RR   +   + +  +  Q+ V I  D GRI RPL+VVE+ GK K       +L  
Sbjct: 625  SFRRLRRTGRVSEFISVFINHHQNAVHIATDDGRICRPLIVVED-GKSKVTKSHLWALRS 683

Query: 635  KNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLS 694
             +  F   L HG++E +   EE D   A       +DI D      TH E++   +LG  
Sbjct: 684  GSMEFDDFLAHGLVEYLDCNEENDSYIA----VYEEDITDST----THLEIEPFTILGAV 735

Query: 695  CGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDC 754
             G+IP+ +H+ + R  YQ      QAIG    N  +R+D+L + + YPQ+P+ +T   + 
Sbjct: 736  AGLIPYPHHNQSPRNTYQCAM-GKQAIGAIANNQFLRIDSLLYTMVYPQKPMVKTRTIE- 793

Query: 755  LGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYK 814
                      ++   +L  GQ+A VAV  + GY+ ED+LV+N++S++RG  R +  R Y 
Sbjct: 794  ----------LIKYDKLPAGQSATVAVMSYSGYDIEDALVLNKSSVDRGFGRCQVFRKYS 843

Query: 815  AEVDNKEMQVKRR-SSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD- 872
              + +     K +    D  N   I+        LD DG   +G  +  G++ I K    
Sbjct: 844  TNLKSYSNGTKDKLKGPDRENGLPIRKHA----LLDSDGLAAVGEKVNQGEVYINKVTPE 899

Query: 873  -------SGADHSIKL---------KHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCL 916
                   +G+D    +         K  +   + KV++S+ +       V  RQ R P +
Sbjct: 900  NALSSGITGSDAGRPIAYIPSPQTYKLPDPSYIDKVMISATEAENQLIKVQTRQTRVPEV 959

Query: 917  GDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIA 976
            GDKFSS HGQKGV+G +    + PF+  GIVPDI++NPH FPSR T G++LE   GK   
Sbjct: 960  GDKFSSRHGQKGVVGIIAEYADMPFSDLGIVPDIIMNPHGFPSRMTVGKMLELIAGKA-- 1017

Query: 977  ALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPT 1036
                GI SG   Y T F    V+ ++  L   GFS  G + L  G TGE + + +F+GP 
Sbjct: 1018 ----GILSGQFGYGTAFGGSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLPAYVFMGPI 1073

Query: 1037 FYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHER 1096
            +YQ+L HM +DK+  R  GP   LTRQP   R R GG++ GEMERDCLIA+G +  L ER
Sbjct: 1074 YYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLER 1133

Query: 1097 LFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLC 1156
            L   SD +++ +C  C  +  +              +C+ C +   +VK  +PY AKLL 
Sbjct: 1134 LMISSDRHEVDVCESCGFMGYL-------------GWCQRCKTSRGVVKMVIPYAAKLLV 1180

Query: 1157 QELFSMGIT--LKFDTEF 1172
            QELFSM +   LK   EF
Sbjct: 1181 QELFSMNVVARLKLADEF 1198


>gi|322696543|gb|EFY88334.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Metarhizium
            acridum CQMa 102]
          Length = 1157

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 389/1234 (31%), Positives = 577/1234 (46%), Gaps = 170/1234 (13%)

Query: 8    FTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIV 67
             TDP +  D   + L  F +          GLV   I+SYN F++  ++    +   TI 
Sbjct: 21   LTDPVNTRDDKFQLLPAFLKVK--------GLVKQHIDSYNFFVEQEIKDIVRA-NRTI- 70

Query: 68   EPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEH-DMFPRHARLQNMTYSSRMK 126
                  S      W    + F  + +D+P     N      ++ P   RL++MTY++ + 
Sbjct: 71   -----RSDVDSNFW----LEFTDIRVDRPRRQDHNDAKSRSEVTPMECRLRDMTYAAPIV 121

Query: 127  VKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG 186
            V + +          DK +  R              N+ +GR+PVM+KS  C + G    
Sbjct: 122  VDIAY--------IRDKQRIIRR-------------NVPLGRMPVMLKSSRCRLSGANNA 160

Query: 187  ------DCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKRN 235
                  +C  D GGYF+I G EKV + QEQ+   R+ V     +N +  +V   +  +++
Sbjct: 161  QMEAMNECPLDPGGYFVINGTEKVILIQEQLSKNRVIVEADEKNNIISASVTSSTHERKS 220

Query: 236  RLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLI---DFTCE 292
            +  V L         K    V++   L   IPI I+  ALG  SD EI+ L+   D   +
Sbjct: 221  KTYVTL---------KKDRIVMTHNVLVEGIPIVIILKALGGLSDYEIMQLVAGSDGRYQ 271

Query: 293  DCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIK----GTTFPPG---ESTEECMNT 345
            D  ++N       D   +   F +   AL+Y+   +K       F P     + EE ++ 
Sbjct: 272  DEFVINF------DEATRAGVFTQ-HQALEYIGARVKMGSRKAMFGPQVRRNNVEEGLDA 324

Query: 346  YL-----FPSLHGTK--QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL-- 396
                      + G     KA ++  M + +L A    +  D+RD   NKRLELAG+LL  
Sbjct: 325  LANLIIAHVPIEGLDFYPKAIYVAMMTRRVLMASQDSKLVDDRDFVGNKRLELAGQLLSL 384

Query: 397  --ERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTN---GLSRAFSTGAWS 451
              E   K  +   +  + K L+++   +R V     ++ ++   N   G++RA  TG WS
Sbjct: 385  LFEDLFKRFMGEVKMSIDKFLKKN---NRAVPLDAVHMISNHANNIGMGINRAIQTGNWS 441

Query: 452  HPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLST 511
                   R +G+   L R + +  L  + R   Q + T KV   R   PS WG +C   T
Sbjct: 442  VKRFNMNR-AGVTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDT 500

Query: 512  PDGENCGLVKNLGVTGLVSTSILE-PIFEQLF--NSGMEKLAD--DASYSLGGKFKVFVD 566
            P+GE CGLVKNL +   ++T++ E P+   +F  ++G+E + +   A     G + + V+
Sbjct: 501  PEGEACGLVKNLALMTHITTNVDEAPVKRWIFTLDTGVEPIRNFSGAEMHREGSWVIHVN 560

Query: 567  GDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENM 626
            G    + +    F S  R  RRR  +   V I  +   + V I  D GRI RP ++V+N 
Sbjct: 561  GTPFALTRYPKRFASRFRAMRRRGWISPFVSINLNSHFNAVHIATDEGRICRPYIIVKN- 619

Query: 627  GK-------IKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIK 679
            GK       +K L     TF   L  GI+E +   EE+D         L+   E++    
Sbjct: 620  GKQKLKDEHLKLLHLGKVTFDDFLTRGIVEYLDVNEEQDA--------LVTIYENQITQS 671

Query: 680  FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQL 739
             TH E++   LLG   G+IPF +H+ + R  YQ      QAIG    N   R+DTL + L
Sbjct: 672  TTHLEIEPFTLLGAVAGLIPFPHHNQSPRNTYQC-AMGKQAIGAIAYNQFNRIDTLLYTL 730

Query: 740  FYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRAS 799
             YPQRP+  T     +      H   LP      GQNA V V  + GY+ ED+LV+N+AS
Sbjct: 731  VYPQRPMVITKTIQLV------HYDKLP-----AGQNATVVVMSYSGYDIEDALVLNKAS 779

Query: 800  LERGMFRSEHIRSYKAEVDNKEMQVKRRSSD--DMVNFGKIQSKIGRVDSLDDDGFPFIG 857
            ++RG  R +  R Y  E+       + R  D  + VN G  + +  + ++LDDDG   +G
Sbjct: 780  IDRGFGRCQVFRKYTTELQKYPNGRRERIGDPVNQVNGGTTRRE-EKYEALDDDGLATVG 838

Query: 858  ANLQSGDIVIGKYA-----------DSGA----DHSIKLKHTERGMVQKVVLSSNDDGKN 902
              ++SG++++ K             D G     D +I  +  +   + KV++S  +    
Sbjct: 839  YRVKSGEVMVKKETPLDLTTTGIGLDRGPSEYRDSAISYRIPDPAYIDKVMISQTEKDTT 898

Query: 903  FSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQT 962
               V  RQ R P LGDKFSS HGQKGV+G +  QE+ PF   G+ PDI++NPH FPSR T
Sbjct: 899  VIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVDQEDMPFADNGLCPDIIMNPHGFPSRMT 958

Query: 963  PGQLLEAALGKGIAALGKGICSGLKRYA--TPFATPSVDAITEQLHRAGFSKWGTERLYD 1020
             G+LLE   GK        I  G   Y     F +  V  +++ L   GFS  G +    
Sbjct: 959  VGKLLECLTGKA------SIIDGRPDYGFGDAFRSHPVKDMSQVLLDYGFSWEGKDYFTS 1012

Query: 1021 GRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEME 1080
            G TGE + + IF GP +YQRL HM +DK+  R+ GP   LTRQP   R R GG++ GEME
Sbjct: 1013 GLTGEPLEAYIFNGPIYYQRLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEME 1072

Query: 1081 RDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSG 1140
            RDCLIA+GA+  L ERL   SD   + IC++C            G    +G YC  C S 
Sbjct: 1073 RDCLIAYGASQLLLERLMLSSDGVTLDICQQC------------GLFGYKG-YCNTCKST 1119

Query: 1141 DDIVKANVPYGAKLLCQELFSM--GITLKFDTEF 1172
              + +  +PY AKLL QEL SM  G+ L+ + EF
Sbjct: 1120 RQVTQMQMPYAAKLLVQELISMNVGVRLQLEDEF 1153


>gi|16081519|ref|NP_393870.1| DNA-directed RNA polymerase subunit B [Thermoplasma acidophilum DSM
            1728]
 gi|548823|sp|Q03587.1|RPOB_THEAC RecName: Full=DNA-directed RNA polymerase subunit B
 gi|809775|emb|CAA48280.1| DNA-directed RNA polymerase [Thermoplasma acidophilum]
 gi|10639562|emb|CAC11534.1| probable DNA-directed RNA polymerase chain B [Thermoplasma
            acidophilum]
          Length = 1195

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 387/1267 (30%), Positives = 612/1267 (48%), Gaps = 214/1267 (16%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNG------LQKAFDSFGETIV----EPGY---DPSKKGE 78
            ++F +YG+V+HQ++S N F          +Q+  D   ET V    +PGY   DP+K G 
Sbjct: 7    AYFKKYGIVNHQLDSMNSFYATPDNPNSVMQQIVD---ETKVSDDADPGYFVLDPAKTGG 63

Query: 79   GEWR--YASMRFGQVTLDKPSFFAGN------GGDEHDMFPRHARLQNMTYSSRMKVKVQ 130
             + R  Y  +R     + + + F G        G  + + P  ARL+++ Y + + +K+ 
Sbjct: 64   HDIRIYYGRVRENGHYVGEQTIFIGKPEIKEASGASNQITPNEARLRDLNYLAPVTLKL- 122

Query: 131  FQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM------KGVE 184
                   R+  D  + G E              I +G +PVMV+S +C +      + +E
Sbjct: 123  -------RIVEDGIEKGSEI-------------IKVGDLPVMVRSKICTLSEENLDQYIE 162

Query: 185  K----------------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAY 228
            K                G+   D GGYFII G+E+V V+ E +   ++ V     W   Y
Sbjct: 163  KNNGPIGLSRREKLQYVGEDPDDPGGYFIIGGSERVIVSLEDLAPNKIMVE----WEDRY 218

Query: 229  KSENKRNRLIVR------LVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKE 282
            +S+ + +++  +      L  M K  D   G   +S+  ++  +P+ IL  ALG+  D +
Sbjct: 219  ESKVEVSKVFSQRGGFRALTSMEKGTD---GTINVSIPSVAGTVPLVILMKALGLERDVD 275

Query: 283  IVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN----ALKYVDKLIKGTTFPPGES 338
            + + I    E   +  I++++I D+ N       G N    A+ Y++K      F  G++
Sbjct: 276  VHDAIASVPE---MEPIIYSNIEDSKNPKVLPPNGVNTTEDAISYLEK-----RFAAGQA 327

Query: 339  TE-------ECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNK 387
             E       + ++  L P L  +     +KA +LG M + LL+   G RK D++D   NK
Sbjct: 328  KEFRDKKISQMLDHSLLPHLGDSPSDRIRKAIYLGRMARSLLELSLGIRKEDDKDHLANK 387

Query: 388  RLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFST 447
            R++LAG+L++   +       K +   L++     R ++ I   +   +LT  +  A ST
Sbjct: 388  RIKLAGDLMDELFRSAFQSVMKDLKYQLEKTYNRKRGIK-IRPAVRQDLLTQRVLHAMST 446

Query: 448  GAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKIC 507
            G W     RT    G+   L R + L T+  LRR    +  T    +AR  HP+ WG+IC
Sbjct: 447  GNWIG--GRT----GVSQLLDRVSNLSTISHLRRIISPLTRTQPHFEARDLHPTQWGRIC 500

Query: 508  FLSTPDGENCGLVKNLGVTGLVSTSI-LEPIFEQLFNSGMEKLADDASYSLGGKFKVFVD 566
               TP+G+NCGLVKN  +   V+  I  + + E L    + ++ +++      K +V+++
Sbjct: 501  PNETPEGQNCGLVKNAALLINVTQGIDPDSVMEILKGMDVREVLEESP----KKGRVYLN 556

Query: 567  GDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENM 626
            GD+IG   D    VS +R +RR   +  +V ++ D+  +EV +  D GR+ RPLL++++ 
Sbjct: 557  GDFIGYHDDPRYLVSRIREERRSGRMSDEVNVRYDDNTNEVIVNSDRGRLRRPLLILKD- 615

Query: 627  GK-------IKSLEGKNYTFQALLDHGIIELVGTEEEED---CCTAWGI--------KYL 668
            GK       I+ L+    +F+ L+  G IE +  EEEED      A+ I         YL
Sbjct: 616  GKTVLDRTMIERLKHGEISFEDLVKQGAIEWLDAEEEEDTYVAVYAYDIPEKCPHCNSYL 675

Query: 669  LKDIED--------------------KKPIKF----THCELDMSFLLGLSCGIIPFANHD 704
             + + D                      P K     TH E+D + +LG+   IIP+  H+
Sbjct: 676  YRSMVDWVNPGESEITLECGFCHQRFNVPSKLSKENTHLEIDPAMILGVVASIIPYPEHN 735

Query: 705  HARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNH 764
             + R+   S   + Q++GF  +N  IR DT  H L YPQ PL RT + D +        H
Sbjct: 736  SSPRITIASAM-AKQSLGFAQSNVRIRPDTRGHLLHYPQVPLVRTRVMDYI--------H 786

Query: 765  ILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQV 824
               RP    GQN +VAV  + GYN +D+LV+N+A++ERG+ RS   R+Y AE        
Sbjct: 787  YDRRPA---GQNFVVAVLSYEGYNIQDALVINKAAIERGLGRSTFFRTYSAE-------- 835

Query: 825  KRRSSDDMVNFGKIQSK--IGR-----VDSLDDDGFPFIGANLQSGDIVIGK-----YAD 872
            +RR      +  +I +   IG        +LDD G  F  A ++  D++IGK     + +
Sbjct: 836  ERRYPGGQEDKFEIPTHDIIGARAEEYYKNLDDSGIIFPEAYVEGSDVLIGKTSPPRFLE 895

Query: 873  SGADH---------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSM 923
             G +          S+ ++  E G V  V L+ ++       + +R  R P LGDKF+S 
Sbjct: 896  EGEERLGPQRRRESSVTMRPNESGYVDNVFLTVSESNSRVVKIKVRSERIPELGDKFASR 955

Query: 924  HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGIC 983
            HGQKGV+G +  QE+ PFT  GI+PD++ NPH+ PSR T G +LE   GK  +  G+ I 
Sbjct: 956  HGQKGVVGLVVPQEDMPFTEDGIIPDLIFNPHSIPSRMTVGHILEMIGGKIASRTGRFID 1015

Query: 984  SGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIH 1043
                   T F+     ++ + L + GF K  TE +YDG TG   ++ IF+G  +YQ+L H
Sbjct: 1016 ------GTIFSGEPEKSLRDALVKYGFRKSSTEVMYDGITGRRFKADIFVGVIYYQKLHH 1069

Query: 1044 MSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDS 1103
            M   K   R+ GPV  LTRQP   R R GG++FGEMERD LIAHGAA  + +RL   SD 
Sbjct: 1070 MVAGKFHARSRGPVQILTRQPTEGRSRQGGLRFGEMERDTLIAHGAAMVIKDRLLDQSDG 1129

Query: 1104 YQMHIC--RKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFS 1161
              +++C    C ++A +  R  G  R      C +C +  +I      Y  KL+  EL S
Sbjct: 1130 TVLYVCGNPSCGHIA-IYDRRKGTLR------CPVCGNTGNIYPIETSYAFKLMRDELIS 1182

Query: 1162 MGITLKF 1168
            +G+ ++ 
Sbjct: 1183 LGVVMRL 1189


>gi|449544049|gb|EMD35023.1| hypothetical protein CERSUDRAFT_116535 [Ceriporiopsis subvermispora
            B]
          Length = 1145

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 366/1186 (30%), Positives = 552/1186 (46%), Gaps = 136/1186 (11%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETI--VEPGYDPSKKGEGEWRYASMRFG 89
            +F    GLV   I+S+N F+   ++    +  +    V+P +         W    +++ 
Sbjct: 42   AFLKVKGLVKQHIDSFNYFVDVDIKNILRANNKVTSDVDPRF---------W----LKYT 88

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
             + +  P     +  D+  + P   RL++ TYS+ + V +Q+        T  K    R+
Sbjct: 89   DINIGFPDRTDADAVDK-SVTPHECRLRDTTYSAPILVTIQY--------TRGKTVVRRQ 139

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG------DCDFDHGGYFIIKGAEK 203
                         N+ IGRIP+M++S+ C + G  +       +C  D GGYFI+KG EK
Sbjct: 140  -------------NVNIGRIPIMLRSNKCVLTGRTEAQLARMTECPLDPGGYFIVKGTEK 186

Query: 204  VFVAQEQICLKRLWVS--NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYF 261
            V + QEQ+   R+ V    + G   A  + +    L  +      +   K G+  L    
Sbjct: 187  VILVQEQLSKNRIIVEIDPTKGIVQASCTSSTHGGLKSK-----TYVATKKGKIYLRHNS 241

Query: 262  LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNAL 321
            +  ++PI I   ALG+ SDKEI+ L   T  +       F+   +   K   + +   AL
Sbjct: 242  IHEDVPIVIALKALGIQSDKEILLL---TAGNHEAYKSAFSPNLEEAAKLGVYTR-HQAL 297

Query: 322  KYVDKLIK------GTTFPPGESTEECMNTYLFP--SLHGT--KQKARFLGYMVKCLLQA 371
            +Y+   +K      G   P  E   E + T +     +HG   + KA F+  M + +L A
Sbjct: 298  EYIGSRVKVNRKVVGPRRPAWEEALEALATIVLAHVPVHGLDFRSKAIFVATMTRRVLMA 357

Query: 372  YSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDRTVRP 427
                +  D+RD   NKRLELAG+LL    E   K   A+ +  + K L++          
Sbjct: 358  MDDEKMVDDRDYVGNKRLELAGQLLALLFEDLFKTFNANLKSAIDKVLKKPSRTSEFDAF 417

Query: 428  IEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQ 487
                     +T+G  RA STG WS    + +R +G+   L R + +  L  + R   Q +
Sbjct: 418  NTMQFQGDHITSGFVRAISTGNWSLKRFKMDR-AGVTHVLSRLSFISALGMMTRISSQFE 476

Query: 488  YTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGM 546
             T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + E PI    F  G+
Sbjct: 477  KTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVEEEPIIRIAFMLGV 536

Query: 547  EKLADDASYSLGG--KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQ 604
            E ++      + G   F V V+G  IG+ +    FV+  R+ RR       V    +   
Sbjct: 537  EDISVATGTEIYGPNTFVVNVNGTIIGLTRYPARFVTNFRKLRRAGRFSEFVSAYINHHH 596

Query: 605  SEVRIFMDAGRILRPLLVVEN----MGKIKSLEGKN--YTFQALLDHGIIELVGTEEEED 658
              V I  D GRI RP+++VEN    +    +L+ K    TF   L  G++E +   EE D
Sbjct: 597  RTVLIASDGGRICRPMIIVENGRPRVTSDHTLQLKKGLLTFDDFLRKGLVEYLDVNEEND 656

Query: 659  CCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSS 718
                    Y+     D  P   TH E++   LLG   G+IP+ +H+ + R  YQ      
Sbjct: 657  S-------YIALYERDIVPAT-THLEIEPFTLLGAVAGLIPYPHHNQSPRNTYQC-AMGK 707

Query: 719  QAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAI 778
            QAIG    N   R+DTL +   YPQ+P+ +T   + +G              L  GQNA 
Sbjct: 708  QAIGAIGYNQLNRIDTLLYLSVYPQQPMVKTKTIELIG-----------YDRLPAGQNAT 756

Query: 779  VAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVN-FGK 837
            VAV  + GY+ ED+L+ N+ASL+RG  R + +R     +         R +D   +  G+
Sbjct: 757  VAVMSYSGYDIEDALIQNKASLDRGYGRCQVLRKNTTLIRKYPNGTFDRLADAPADDNGQ 816

Query: 838  IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHS---------------IKLK 882
            IQ K    D +  DG   +G  +  GD+ I K   + A+ +               +  K
Sbjct: 817  IQKK---YDIIQLDGLAGVGERVDPGDVYINKQTPTNANDNSFTGQAATVPYKNAPMTYK 873

Query: 883  HTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFT 942
                G + KV+++  ++ +    V +RQ R P LGDKFSS HGQKGV G + +QE+ PF 
Sbjct: 874  SPVAGYIDKVMITDTENDQTLIKVLIRQTRRPELGDKFSSRHGQKGVCGLIVNQEDMPFN 933

Query: 943  IQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAIT 1002
             QGIVPD ++NPH FPSR T G+++E   GK       G+ +G  +Y T F    V+ ++
Sbjct: 934  DQGIVPDTIMNPHGFPSRMTVGKMIELLAGKA------GVLAGKLQYGTAFGGSKVEDMS 987

Query: 1003 EQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTR 1062
              L   GFS  G + L  G TGE + + ++ GP +YQ+L HM  DK+  R  GP   LTR
Sbjct: 988  RILIENGFSYSGKDMLTSGITGEPMEAYVYFGPIYYQKLKHMVMDKMHARARGPRATLTR 1047

Query: 1063 QPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRV 1122
            QP   R R GG++ GEMERDCLI +GA   L ERL   SD ++++ C +C          
Sbjct: 1048 QPTEGRSREGGLRLGEMERDCLIGYGATQLLLERLMISSDKFEVNACEEC---------- 1097

Query: 1123 VGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
               G      +C  C S   + +  +PY AKLL QEL +M +  + 
Sbjct: 1098 ---GLLGYNGWCTYCKSSKKMAQLTIPYAAKLLFQELMAMNVVPRL 1140


>gi|358378199|gb|EHK15881.1| hypothetical protein TRIVIDRAFT_206553 [Trichoderma virens Gv29-8]
          Length = 1157

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 380/1211 (31%), Positives = 567/1211 (46%), Gaps = 164/1211 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN F++  +++   +   TI       S      W    + F  +
Sbjct: 37   AFLKVKGLVKQHIDSYNFFVETEIKEIVRA-NRTI------RSDVDSNFW----LDFTDI 85

Query: 92   TLDKPSFF-AGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
             +D+P      +     ++ P   RL++MTY++ + V + +          DK K  R+ 
Sbjct: 86   RVDRPRRLDYTDSKSRTEVTPMECRLRDMTYAAPIFVDIAY--------IRDKQKIVRK- 136

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFIIKGAEKV 204
                        N+ +GR+P+M+KS  C + G       +  +C  D GGYFI+ G EKV
Sbjct: 137  ------------NVPLGRMPIMLKSCKCRLSGANNSQMEQMNECPLDPGGYFIVNGTEKV 184

Query: 205  FVAQEQICLKRLWV-----SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
             + QEQ+   R+ V     +N +  +V   +  ++++  V L         K  +  L+ 
Sbjct: 185  ILIQEQLSKNRVIVEADEKNNVISASVTSSTHERKSKTYVTL---------KKDKITLTH 235

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLI---DFTCEDCSILNILFASIHDADNKCDEFRK 316
              L   IPI I+  ALG  SD EI+ L+   D   +D  ++N       D   K   F +
Sbjct: 236  NILVEGIPIVIILKALGGLSDYEIMQLVAGSDGRYQDEFLVNF------DEAAKAGIFTQ 289

Query: 317  GRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQ---------------KARFL 361
               AL+Y+   +K  +   G+   +     +   L                    KA ++
Sbjct: 290  -HQALEYIGSRVKMGS-RKGQFGAQARRNNVEEGLDALANLIIAHVPIEGLDFYPKAIYV 347

Query: 362  GYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQR 417
              M + +L A    +  D+RD   NKRLELAG+LL    E   K  +   +  + K L++
Sbjct: 348  AMMTRRVLMASQDPKLVDDRDFVGNKRLELAGQLLSLLFEDLFKRFMGEVKMSIDKFLKK 407

Query: 418  DLYGDRTVRPIEYYLDASILTN----GLSRAFSTGAWSHPFKRTERISGIVANLGRANPL 473
            +   +R V P++     S   N    G++RA  +G WS       R +G+   L R + +
Sbjct: 408  N---NRAV-PLDAVHMISNHANSIGLGINRAIQSGNWSVKRFNMNR-AGVTHVLSRLSYI 462

Query: 474  QTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI 533
              L  + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T++
Sbjct: 463  SALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTNV 522

Query: 534  LE-PIFEQLF--NSGMEKLAD--DASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRR 588
             E P+   +F  + G+E + +   A     G + + V+G    + +    F    R  RR
Sbjct: 523  DEAPVMRWIFTLDVGVEPIRNFSGAEMHREGSYIIHVNGTPFALTRYPKRFTHRFRTMRR 582

Query: 589  RKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQA 641
            R  +   V I  +   + + I  D GRI RP ++V+N GK       ++ L+    TF  
Sbjct: 583  RGWISPFVGIHTNSHFNAIHIATDEGRICRPYIIVKN-GKQKLKPEHLRLLQMGKVTFDD 641

Query: 642  LLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFA 701
             L  GI+E +   EE D         L+   ED+  +  TH E++   LLG   G+IPF 
Sbjct: 642  FLTKGIVEYLDVNEENDA--------LITIYEDQVTMSTTHLEIEPFTLLGAVAGLIPFP 693

Query: 702  NHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYG 761
            +H+ + R  YQ      QAIG    N   R+DTL + L YPQRP+  T     +      
Sbjct: 694  HHNQSPRNTYQCAM-GKQAIGAIAHNQFNRIDTLLYTLVYPQRPMVITKTIQLI------ 746

Query: 762  HNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKE 821
            H   LP      GQNA V V  + GY+ ED+LV+N+AS++RG  R +  R Y  E+    
Sbjct: 747  HYDKLP-----AGQNATVVVMSYSGYDIEDALVLNKASIDRGFGRCQVFRKYTTELQKYP 801

Query: 822  MQVKRRSSDDMVNFGK-IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA--------- 871
               + R  D +      +  +I + ++LDDDG   +G  + SG+ ++ K           
Sbjct: 802  NGRRERIGDPLNEIDNGVMRRIKKHEALDDDGLAIVGQRIHSGEAMVKKETPLDMTTTGI 861

Query: 872  --DSGA----DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHG 925
              D G     D ++  +  +   + KV++S  +       V  RQ R P LGDKFSS HG
Sbjct: 862  GLDRGPSEYRDTAVSYRIADPAYIDKVMISQTEKDTTVIKVQTRQTRRPELGDKFSSRHG 921

Query: 926  QKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSG 985
            QKGV+G +  QE+ PF   G+ PDI++NPH FPSR T G+LLE   GK        I  G
Sbjct: 922  QKGVVGIIVDQEDMPFADSGLCPDIIMNPHGFPSRMTVGKLLECLTGKA------SIVHG 975

Query: 986  LKRYA--TPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIH 1043
             K Y     F +  V+ +++ L   GFS  G +    G TGE + + IF GP +YQRL H
Sbjct: 976  RKEYGFGDAFRSHPVEQVSKVLVDHGFSWEGKDYFTSGITGEPLEAYIFNGPIYYQRLKH 1035

Query: 1044 MSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDS 1103
            M +DK+  R  GP   LTRQP   R R GG++ GEMERDCLIA+GA+  L ERL   SD 
Sbjct: 1036 MVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMLSSDG 1095

Query: 1104 YQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSM- 1162
              + IC++C            G    RG YC  C S  ++ K  +PY AKLL QEL SM 
Sbjct: 1096 VMIDICQQC------------GLFGYRG-YCGTCKSTREVTKMQMPYAAKLLVQELISMN 1142

Query: 1163 -GITLKFDTEF 1172
             G+ L+ + EF
Sbjct: 1143 VGVRLQLEDEF 1153


>gi|453088008|gb|EMF16049.1| DNA-directed RNA polymerase III subunit RPC2 [Mycosphaerella
            populorum SO2202]
          Length = 1204

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 369/1196 (30%), Positives = 571/1196 (47%), Gaps = 152/1196 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GL+    +S++ FI   ++K   +   +++      S+    +W    +RF  +
Sbjct: 102  AFLQVKGLIKQHTDSFDYFIDVEMKKIVQA--NSMIH-----SQVKAEKW----IRFTDI 150

Query: 92   TLDKPSFF--AGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
             + KPS    A  G  + ++ P   RL++MTYS+ + V     VY ++     K      
Sbjct: 151  RIGKPSRIEDARAGYVQTEVTPNECRLRDMTYSAPIYVDF---VYPRQSGNVRK------ 201

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGAEK 203
                        T+++IGR+P+M++S  C + G  + +      C  D GGYFI++G EK
Sbjct: 202  ------------TDVLIGRVPMMLRSSKCVLHGRSESEMSFLNECAVDPGGYFIVRGQEK 249

Query: 204  VFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLS 263
            V + QEQ+   R+ V +  G   A  + +  N      +    +  +K G   L    L 
Sbjct: 250  VILVQEQLSKNRVIVESFKGVIQASVTSHTAN------IKTKTYVLVKKGHLYLKHNSLV 303

Query: 264  TEIPIWILFFALGVSSDKEIVNLI---DFTCEDCSILNILFASIHDADNKCDEFRKGRNA 320
             ++P+ I+  A+GV SD EI+ L    D   +D    N+  A++     +         A
Sbjct: 304  EDVPVAIIMRAMGVQSDHEILLLAAGNDAQYQDEFAPNLELAALEGVFTQ-------EQA 356

Query: 321  LKYVDKLIKGTTF--------PPGESTEECMNTYLFPSLH----GTKQKARFLGYMVKCL 368
            L ++   +K   F         P +   E +   + P +       + KA ++ +M + +
Sbjct: 357  LDFIAARLKPDRFINKHKEFKTPKQQALEKLAGTIIPHVEVEGLNFRPKALYIAHMTRRV 416

Query: 369  LQAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQR-----DL 419
            L A +  +  D+RD   NKRLELAG++L    E   K  I   +  M K LQ+     + 
Sbjct: 417  LMAINDPKLVDDRDYVGNKRLELAGQMLSLLFEDLFKDSIRQIQMTMDKMLQKHNPTSEF 476

Query: 420  YGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDL 479
               R V  IE     S +T+G+ RA STG W+    R +R +G+   L R + +  L  +
Sbjct: 477  DPVRIVEQIE-----SRITSGMERAISTGNWTLKRFRMDR-AGVTHVLSRLSYISALGMM 530

Query: 480  RRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIF 538
             R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL +   ++T+  E P+ 
Sbjct: 531  TRISSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTADDEGPVR 590

Query: 539  EQLFNSGMEKLADDASYSL--GGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQV 596
            + ++  G E +   +   +   G + +F++G    + +    F+   R+ RR   +   V
Sbjct: 591  KMMYVLGAEDVTSASGTEIYGAGAYIIFINGTPAALTRQPKQFLLGFRKFRRMGRISEFV 650

Query: 597  EIKRDELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHGIIEL 650
             I  +   + V I  D GR+ RP++VVE          ++SL     TF   L  GI+E 
Sbjct: 651  SIFINHHHNGVHIATDEGRVCRPMIVVEKAKSKVTARFLESLRKGTMTFDDALSRGIVEY 710

Query: 651  VGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVL 710
            +   EE D      I    KDI D      TH E++   +LG   G+IP+ +H+ + R  
Sbjct: 711  LDVNEENDS----NIAVYEKDINDSH----THLEIEPFTILGAVAGLIPYPHHNQSPRNT 762

Query: 711  YQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPE 770
            YQ      QAIG    N   R+DTL + + YPQ+P+  T   +           ++   +
Sbjct: 763  YQC-AMGKQAIGAIAYNQFTRIDTLLYLMVYPQKPMVTTRTIE-----------LVKYDK 810

Query: 771  LYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSD 830
            L  GQNA+VAV  + GY+ ED+LV+N+AS +RG  R +  +     + + +     R +D
Sbjct: 811  LPAGQNAVVAVMSYSGYDIEDALVLNKASCDRGFGRCQVFKKVSMPLKSYQNGYTDRLAD 870

Query: 831  DMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSI----------- 879
               N  +   KIG+      DG   +G+ L +GD  + K A      +I           
Sbjct: 871  RDPNNAR-HRKIGK------DGLVEVGSELDNGDTYMLKEAPINQVQTIPNSQQRWSPAH 923

Query: 880  -KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQEN 938
               K  +     KVV+++ND       +  RQ R P +GDKFSS HGQKGV+G L  Q +
Sbjct: 924  MSYKTPDPCYADKVVITANDRNDTILKIQTRQTRRPEIGDKFSSRHGQKGVVGLLAEQAD 983

Query: 939  FPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSV 998
             PF+ QG+VPDI++NPH FPSR T G++LE   GK       G+ +G + Y T F    V
Sbjct: 984  MPFSDQGVVPDIIMNPHGFPSRMTVGKMLELVSGKA------GVLAGKQEYGTAFGGSKV 1037

Query: 999  DAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVH 1058
            + +   L + GFS  G + L  G TGE +   +F GP +YQ+L HM +DK+  R TGP  
Sbjct: 1038 EDMGAVLIKHGFSYSGKDCLTSGITGESLPFYVFFGPIYYQKLKHMVQDKMHARATGPRA 1097

Query: 1059 PLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANV 1118
             LTRQP   R R GG++ GEMERDCLIA+GA+  L ERL   SD++ + +C+ C      
Sbjct: 1098 ILTRQPTEGRSRQGGLRLGEMERDCLIAYGASQLLLERLMISSDAHDVDVCQTC------ 1151

Query: 1119 IQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI--TLKFDTEF 1172
                   G      +C+ C S   +V+  +PY AKLL QEL SM +  +L+   EF
Sbjct: 1152 -------GMMGYNNWCQSCSSSRSVVRMTMPYAAKLLIQELMSMNVKASLQLADEF 1200


>gi|45545335|gb|AAS67515.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Mycosphaerella punctiformis]
          Length = 935

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 331/967 (34%), Positives = 485/967 (50%), Gaps = 123/967 (12%)

Query: 201  AEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-----NKRNRLI----VRLVDMSKFEDIK 251
            +EKV +AQE+     + V    G      +E      +  RLI    V+L + +   +  
Sbjct: 1    SEKVLIAQERSAANIVQVFKKKGTNTPVMAELRSAVERGTRLISSTTVKLYNQAVNANNP 60

Query: 252  GGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFAS------IH 305
            G     S+ ++ T+IPI I+F ALGV SD++I+N I    ED  +L +L         + 
Sbjct: 61   GQTIKGSLPYIKTDIPIAIIFRALGVVSDEDILNHI-VNKEDTQMLEMLKPCLEEAFVVQ 119

Query: 306  DADNKCDEF-RKGRNA------LKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKA 358
            D DN  D   R+G+        ++Y   +++   F P  S EE   T          +KA
Sbjct: 120  DRDNALDFIGRRGQQTGTKDRRIRYARDIMQ-KEFLPHISQEEGSET----------KKA 168

Query: 359  RFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRD 418
             FLGYMV  +LQ   GR + D+RD F  KRL+LAG L+ +  ++      K M   L R 
Sbjct: 169  FFLGYMVNRMLQCALGRTEEDDRDHFGKKRLDLAGPLMAQVFRLKFVQLVKEMKMYLHRC 228

Query: 419  LYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVD 478
            + G R    I   +  +ILT+GL    +TG W    K +   +G+   L R     TL  
Sbjct: 229  VEGGRDFN-ITLAIKTNILTSGLRYCLATGNWGDQKKASSAKAGVSQVLNRYTYASTLSH 287

Query: 479  LRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSIL-EPI 537
            LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   V+     EP+
Sbjct: 288  LRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVTVGTPGEPL 347

Query: 538  FEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVE 597
             + +   GM+ L +          KVF++G W+GV K++      LR  RR+  L  +V 
Sbjct: 348  TDFMRQRGMDLLEEYDPVLEPKSTKVFINGTWVGVHKNAGQLTETLRSLRRKGLLSFEVT 407

Query: 598  IKRDELQSEVRIFMDAGRILRPLLVVEN----------------MGKIK-------SLEG 634
            I RD  + E+R+F DAGR+ RPL VV+N                + K++       SL G
Sbjct: 408  IIRDVREREIRVFTDAGRVCRPLFVVDNKPDAAERGSLVLRQDQVAKLQQDQENAASLRG 467

Query: 635  --------KNYTFQALLDHGIIELVGTEEEEDCCTAW-------------GIKYLLKDIE 673
                     +Y +  L++ G++E +  EEEE                   G +Y     +
Sbjct: 468  ISEEDKALHSYGWMGLVNEGVVEYLDAEEEETAMIIMTPEDLDEHRALRSGAEYDDPKSD 527

Query: 674  DKKPIK---------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFP 724
              + IK         +THCE+  + +LG+   IIPF +H+ + R  YQS     QA+G  
Sbjct: 528  PHRRIKPKPNMQVHTWTHCEIHPAMILGICASIIPFPDHNQSPRNTYQS-AMGKQAMGVT 586

Query: 725  TTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVH 784
             TN ++R+DT+++ L+YPQ+PL  T   +            L   +L  GQNAIVA+  +
Sbjct: 587  LTNYNVRMDTMANVLYYPQKPLATTRSME-----------FLKFRDLPAGQNAIVAIASY 635

Query: 785  LGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGR 844
             GYNQEDS++MN++S++RG+FRS   R+Y  +     M V   S +       ++ K G 
Sbjct: 636  SGYNQEDSVIMNQSSIDRGLFRSLFYRAYMDQEKRVGMSVVE-SFERPERAATMKMKHGS 694

Query: 845  VDSLDDDGFPFIGANLQSGDIVIGKYADSGADH---------------SIKLKHTERGMV 889
             D LDDDG    G  +  GD++IGK A    D                S  L+ TE G+V
Sbjct: 695  YDKLDDDGIVSPGCRVSGGDMLIGKTAPMAPDAEELGMRTKMQVKRDVSTPLRSTENGVV 754

Query: 890  QKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPD 949
             +V+L++N +G  F+ V  R  + P +GDKF+S HGQKG +G    QE+ PF+  G+VPD
Sbjct: 755  DQVLLTTNTEGLRFAKVRTRVTKVPQIGDKFASRHGQKGTIGITYRQEDMPFSADGLVPD 814

Query: 950  IVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAG 1009
            I+INPHA PSR T   L+E  L K       G   G +  ATPF   +V +I+  L   G
Sbjct: 815  IIINPHAIPSRMTIAHLIECLLSK------VGALQGQEGDATPFTDVTVTSISMILADHG 868

Query: 1010 FSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRK 1069
            F + G E +Y+G TG+ + + +F+GPT+YQRL HM +DK+  R  GP+  LTRQPV  R 
Sbjct: 869  FQQRGFEVMYNGHTGKKLNAQVFLGPTYYQRLRHMVDDKIHARARGPLQVLTRQPVEGRA 928

Query: 1070 RFGGIKF 1076
            R GG++F
Sbjct: 929  RDGGLRF 935


>gi|403182564|gb|EJY57481.1| AAEL017156-PA [Aedes aegypti]
          Length = 1134

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 361/1193 (30%), Positives = 565/1193 (47%), Gaps = 148/1193 (12%)

Query: 28   KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMR 87
            K   +F    GLV   I+S+N FI   ++    +  E  V+   DP            ++
Sbjct: 27   KLVPAFLQIKGLVKQHIDSFNYFINVDIKNIVRANDE--VKSDADPC---------FYLK 75

Query: 88   FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
            +  V++  P    G   +     P   RL++MTY++ + V +++   TQ+ V +      
Sbjct: 76   YLNVSIGMPDVEEG-FNNTKSTTPHECRLRDMTYAAPITVDIEYTRGTQRVVRN------ 128

Query: 148  REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGA 201
                           N++IGR+P+M++S  C + G       +  +C  D GGYF+I+G 
Sbjct: 129  ---------------NLLIGRMPIMLRSSNCVLTGKSEYELSQVNECPMDPGGYFVIRGT 173

Query: 202  EKVFVAQEQICLKRLWV---SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLS 258
            EKV + QEQ+   ++     +N +   V   +  K++R I+    +SK      G+  L 
Sbjct: 174  EKVILIQEQVSWNKMITEDYNNVIQCQVTSSTHEKKSRTIL----LSKH-----GKYYLK 224

Query: 259  VYFLSTEIPIWILFFALGVSSDKEIVNL--IDFTCEDCSILNILFASIHD--ADNKCDEF 314
               ++ EIP+ I+F A+G++SD+EI+ L  ID   +     ++L A+ H      +  E+
Sbjct: 225  HNSMTEEIPVAIIFKAMGIASDQEIMQLVGIDTETQKRFAPSLLEATNHKVYTQQRALEY 284

Query: 315  RKGRNALKYVDKLIKGTTFPPGESTEECMNTYL----FPSLHGTKQKARFLGYMVKCLLQ 370
               +   K              E+ +    T L     P+ +  + KA ++  M++ ++ 
Sbjct: 285  MGSKLIAKRFTTAATKYKTTADEARDLLATTILAHVPVPNFN-FQVKAIYVALMIRRVMA 343

Query: 371  AYSGRRKCDNRDDFRNKRLELAGELLER-----------ELKVHIAHARKRMAKALQRDL 419
            A   +   D+RD + NKRLELAG LL             ELK+ IA       KA Q D+
Sbjct: 344  AEVDKSAVDDRDYYGNKRLELAGSLLSLMFEDLFKRFNWELKM-IADKNIPKIKAAQFDV 402

Query: 420  YGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDL 479
                       ++ A++++ GL  A STG W+    + ER +G+   L R + +  L  +
Sbjct: 403  VK---------HMRAALISTGLETAISTGNWTIKRFKMER-AGVTQVLSRLSYISALGMM 452

Query: 480  RRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-LEPIF 538
             R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T +  EP+ 
Sbjct: 453  TRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVDEEPVI 512

Query: 539  EQLFNSGME--KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQV 596
               +NSG+E  +L    + +    F VF++G+ +GV       V   R  RR+  + + V
Sbjct: 513  RLAYNSGVEDIRLLGGETINNPKVFMVFINGNILGVTIGYKRLVEVFRMMRRKGLIGSFV 572

Query: 597  EIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIEL 650
             I     Q  V I  D GR+ RP ++V+N         I+ L+     F   L  G+IE 
Sbjct: 573  SIHTSFTQRCVYIHTDGGRLCRPYIIVQNGRPLVQQEHIEQLKIGLRKFDDFLHDGLIEY 632

Query: 651  VGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVL 710
            +   EE D   A+      +++ D  P K TH E++   LLG+  G++P+ +H+ + R  
Sbjct: 633  LDVNEENDSFIAY------QEV-DIDPEKTTHLEVEPFTLLGVCAGLVPYPHHNQSPRNT 685

Query: 711  YQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPE 770
            YQ      QA+G    N   R+DTL + + YPQ P+ R+   +           +    +
Sbjct: 686  YQC-AMGKQAMGIIGYNQKNRIDTLMYNIVYPQTPMVRSRTIE-----------LTNFDK 733

Query: 771  LYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSD 830
            L  GQNA VAV  + GY+ ED+L++N+AS++RG  R    ++ K  +     Q   R   
Sbjct: 734  LPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTIKRYSNQTFDRIMG 793

Query: 831  DMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVI------------------GKYAD 872
             M +       I + + LD DG    G  + S   ++                  G+   
Sbjct: 794  PMKD-SLTNKIIFKHECLDTDGIISPGEKVLSKQTMVNKEMPAVKSTNPIEQKEAGQQPI 852

Query: 873  SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGF 932
            + +   I  K TE   ++KV++S+N++ +    + LRQ R P +GDKFSS HGQKGV G 
Sbjct: 853  TYSPVPITYKGTEPSYIEKVMVSTNNEEEFLVKILLRQTRRPEIGDKFSSRHGQKGVTGL 912

Query: 933  LESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATP 992
            +  QE+ PF   G+ PD+V+NPH FPSR T G+ LE    K       G+  G   Y T 
Sbjct: 913  IVEQEDLPFNDFGMSPDMVMNPHGFPSRMTVGKTLELLGSKA------GVLEGKFHYGTA 966

Query: 993  FATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFR 1052
            F       + ++L + GF+  G +  Y G TGE +   I+ GP +YQ+L HM +DK+  R
Sbjct: 967  FGGSKCQDLQDELFKNGFNFLGKDIFYSGITGEPLEMYIYSGPVYYQKLKHMVQDKMHAR 1026

Query: 1053 NTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKC 1112
              GP   LTRQP   R R GG++ GEMERDCLI++GA+  + ERL   SD++ + +C  C
Sbjct: 1027 ARGPRAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFDVDVCNVC 1086

Query: 1113 KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
                         GR     +C  C S   + K ++PY  KLL QEL SM I 
Sbjct: 1087 -------------GRLAYSSWCHNCRSSASVSKISMPYACKLLFQELTSMNIV 1126


>gi|239613518|gb|EEQ90505.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces dermatitidis
            ER-3]
 gi|327357033|gb|EGE85890.1| DNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1228

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 372/1218 (30%), Positives = 570/1218 (46%), Gaps = 182/1218 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN F++  L+K   +  E  +    DP+           +RF  +
Sbjct: 110  AFLKVKGLVKQHIDSYNYFVEVQLKKIVQASAE--IRSDVDPN---------FYIRFHDI 158

Query: 92   TLDKPSFFAGNGGDEHD--------MFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDK 143
             L  P        +E D        + P   RL++MTY++ + V  ++ V  ++RV  + 
Sbjct: 159  YLGNPR----RADEEQDSKFDVASTITPNECRLRDMTYAAPILVDFEY-VRGRQRVKRN- 212

Query: 144  FKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFI 197
                                  IGR+PVM++S  C +    + +      C  D GGYFI
Sbjct: 213  -------------------GTAIGRMPVMLRSSKCVLSNKSEAEMQLLHECPLDPGGYFI 253

Query: 198  IKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKS------ENKRNRLIVRLVDMSKFEDIK 251
            + G EKV + QEQ+   R+ V   +   +   S      E K    I+          +K
Sbjct: 254  VNGTEKVILVQEQLSKNRVIVETDLKKEIVQASVTSSSNERKSKSYII----------MK 303

Query: 252  GGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNL---IDFTCEDCSILNILFASIHDAD 308
                 +    L+ ++PI IL  A+G+ SDKE++ L   ID T ++   +N   A      
Sbjct: 304  KDRIYMRHNVLNEDVPIVILLKAMGIQSDKEMLLLVAGIDSTYQEDFSINFEEAV----- 358

Query: 309  NKCDEFRKGRNALKYVDKLIKGTTFPPG-------------ESTEECMNTYLFPSLHGTK 355
             K   + +   AL+Y+   IK    P               E+    + +++       +
Sbjct: 359  -KLGIYTQ-HQALEYIGSRIKINRKPNSFGITRRNHVQEAIEAISSVIISHVVVENLNFR 416

Query: 356  QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL-----------ERELKVHI 404
             KA ++ +M + +L A       D+RD   NKRLELAG+LL           + ++K++I
Sbjct: 417  PKALYVAHMARRVLMAKHDPSLVDDRDYVGNKRLELAGQLLALLFEDLFKKFQFDIKMNI 476

Query: 405  AHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIV 464
                K+  +  Q D YG   +         + +T G++RA STG WS    R ER +G+ 
Sbjct: 477  DKVLKKPVRTEQFDAYGVVAIH-------GNHITQGMNRAISTGNWSLKRFRMER-AGVT 528

Query: 465  ANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLG 524
              L R + +  L  + R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL 
Sbjct: 529  HVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLA 588

Query: 525  V-TGLVSTSILEPIFEQLFNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVS 581
            + T + +    EP+ + +F  G E +       L G+  + +F++G  I + +    F++
Sbjct: 589  LMTHITTNDEEEPVRKLIFALGAEDVQTVGGRELHGQGAYIIFLNGSPIALTRRPKFFLN 648

Query: 582  ELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIK-------SLEG 634
              RR RR   +   + +  +  Q+ V I  D GRI RPL+VVE+ GK K       +L  
Sbjct: 649  SFRRLRRTGRVSEFISVFINHHQNAVHIATDDGRICRPLIVVED-GKSKVTKSHLWALRS 707

Query: 635  KNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLS 694
             +  F   L HG++E +   EE D   A       +DI D      TH E++   +LG  
Sbjct: 708  GSMEFDDFLAHGLVEYLDCNEENDSYIA----VYEEDITDST----THLEIEPFTILGAV 759

Query: 695  CGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDC 754
             G+IP+ +H+ + R  YQ      QAIG    N  +R+D+L + + YPQ+P+ +T   + 
Sbjct: 760  AGLIPYPHHNQSPRNTYQCAM-GKQAIGAIANNQFLRIDSLLYTMVYPQKPMVKTRTIE- 817

Query: 755  LGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYK 814
                      ++   +L  GQ+A VAV  + GY+ ED+LV+N++S++RG  R +  R Y 
Sbjct: 818  ----------LIKYDKLPAGQSATVAVMSYSGYDIEDALVLNKSSVDRGFGRCQVFRKYS 867

Query: 815  AEVDNKEMQVKRR-SSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD- 872
              + +     K +    D  N   I+        LD DG   +G  +  G++ I K    
Sbjct: 868  TNLKSYSNGTKDKLKGPDRENGLPIRKHA----LLDSDGLAAVGEKVNQGEVYINKVTPE 923

Query: 873  -------SGADHSIKL---------KHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCL 916
                   +G+D    +         K  +   + KV++S+ +       V  RQ R P +
Sbjct: 924  NALSSGITGSDAGRPIAYIPSPQTYKLPDPSYIDKVMISATEAENQLIKVQTRQTRVPEV 983

Query: 917  GDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIA 976
            GDKFSS HGQKGV+G +    + PF+  GIVPDI++NPH FPSR T G++LE   GK   
Sbjct: 984  GDKFSSRHGQKGVVGIIAEYADMPFSDLGIVPDIIMNPHGFPSRMTVGKMLELIAGKA-- 1041

Query: 977  ALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPT 1036
                GI SG   Y T F    V+ ++  L   GFS  G + L  G TGE + + +F+GP 
Sbjct: 1042 ----GILSGQFGYGTAFGGSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLPAYVFMGPI 1097

Query: 1037 FYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHER 1096
            +YQ+L HM +DK+  R  GP   LTRQP   R R GG++ GEMERDCLIA+G +  L ER
Sbjct: 1098 YYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLER 1157

Query: 1097 LFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLC 1156
            L   SD +++ +C  C  +  +              +C+ C +   +VK  +PY AKLL 
Sbjct: 1158 LMISSDRHEVDVCESCGFMGYL-------------GWCQRCKTSRGVVKMVIPYAAKLLV 1204

Query: 1157 QELFSMGIT--LKFDTEF 1172
            QELFSM +   LK   EF
Sbjct: 1205 QELFSMNVVARLKLADEF 1222


>gi|25144348|ref|NP_498192.2| Protein RPC-2 [Caenorhabditis elegans]
 gi|351060666|emb|CCD68383.1| Protein RPC-2 [Caenorhabditis elegans]
          Length = 1154

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 366/1212 (30%), Positives = 565/1212 (46%), Gaps = 171/1212 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETI--VEPGYDPSKKGEGEWRYASMRFG 89
            +F    GLV   + S++ F++  ++    S  +      P +          +Y  +R G
Sbjct: 34   AFLKVRGLVKQHLVSFDHFVQEEIRSIMLSNQKITSDANPNF--------YLKYLDIRIG 85

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
                 KPS   G       + P+  RL++MTYS+ + V +++    Q+    D       
Sbjct: 86   -----KPSSEEGLNMTHDKITPQECRLRDMTYSAPISVDIEYTRGNQRVFKKD------- 133

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEK 203
                          +IIGR+P+M++S  C ++ + +       +C +D GGYF++KG+EK
Sbjct: 134  --------------LIIGRMPIMLRSSKCILRDLAEEELARVQECPYDPGGYFVVKGSEK 179

Query: 204  VFVAQEQICLKRLWV----SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            V + QEQ+   R+ V    S  +   V   +  ++++  V +         K G+  +  
Sbjct: 180  VILIQEQLSKNRIMVGRNSSKELQCEVLSSTSERKSKTYVTM---------KKGKYSVRH 230

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
              L+ ++P+ I+F A+GV SD +IV+ I    +  S     FA   +       + + + 
Sbjct: 231  NQLTDDVPVSIIFKAMGVESDFDIVSTIGHEEKYVSA----FAQTLEESINAGVYTQ-QQ 285

Query: 320  ALKYVDKLIKGTTF---------------PPGEST-----EECMNTYLFPSLHGTKQKAR 359
            AL YV   +K   F               PP E          M T++       K KA 
Sbjct: 286  ALAYVTSKVKARKFTPFGSLPGTSVSVLTPPKEHEAVDFLSNSMITHIACPDGNFKMKAI 345

Query: 360  FLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKAL 415
            +LG M + L+Q   G    D+RD + NKRLELAG LL    E   K   +  ++    AL
Sbjct: 346  YLGLMTRRLIQTELGENGLDDRDFYGNKRLELAGSLLSLLFEDVFKRFNSELKRIADNAL 405

Query: 416  QRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQT 475
             + +        I  ++   ++TN +  A STG W     R ER+ G+   L R + +  
Sbjct: 406  MKTMAAPLD---IVKHMRQDMITNTIVNAMSTGNWIIKRFRMERL-GVTQVLSRLSYISA 461

Query: 476  LVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SIL 534
            L  + R     + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T S  
Sbjct: 462  LGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALISHITTDSDE 521

Query: 535  EPIFEQLFNSGMEKLADDASYSLGGKFK---VFVDGDWIGVCKDSLSFVSELRRKRRRKE 591
            +P+   L NSG+E L  +  +S   K +   +F++G  IG   D    V  +R  RR   
Sbjct: 522  KPVLRLLLNSGVEDL-HNVHFSHVNKPENTLIFLNGVLIGTAVDPERVVKAVRDLRRSGL 580

Query: 592  LPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDH 645
            L   V + R      V I  D GR+ RP ++V+N         ++ L+     F+  +D 
Sbjct: 581  LSEFVSVSRSLTNRSVFISSDGGRLCRPYIIVKNGTPMLTQAHVQELKEGKMIFEDFVDD 640

Query: 646  GIIELVGTEEEEDCCTA-WGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHD 704
            GI+E +   E  D   A +G     ++I  +     TH E++   LLG+  G+IP+ +H+
Sbjct: 641  GIVEYLDVNEMNDALIAVYG-----REIGPET----THLEIEPFTLLGVCAGLIPYPHHN 691

Query: 705  HARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNH 764
             + R  YQ      QA+G    N   R+D++ + L YPQRPL ++   +           
Sbjct: 692  QSPRNTYQC-AMGKQAMGTIAYNQQKRIDSIMYLLCYPQRPLVKSKTIE----------- 739

Query: 765  ILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRS---EHIRSYKAEVDNKE 821
            +    +L  G N I+AV  + GY+ ED+LV+N+ASL+RG  R    +H++    +  N+ 
Sbjct: 740  LTNFEKLPAGANGIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHVKGTAKKYPNQT 799

Query: 822  MQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKY-----ADSGA- 875
                   + D       +  I +  +LD +G  F GA +     +I K+      +SG  
Sbjct: 800  FDRLLGPALD----PNTRKPIFKHKNLDQEGIVFAGARIMPKQTIINKHMPVVSGESGPG 855

Query: 876  ------------------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLG 917
                              D SI  K       ++V+L+ N+D  +   V LRQ R P LG
Sbjct: 856  ASASANTIGIAGRQVDYKDVSITYKTPTPSYAERVLLTYNEDEAHLFKVLLRQTRRPELG 915

Query: 918  DKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAA 977
            DKFSS HGQKGV G +  QE+ PF   G+VPD+++NPH +PSR T G+L+E   GK    
Sbjct: 916  DKFSSRHGQKGVCGLIAQQEDMPFNDLGMVPDMIMNPHGYPSRMTVGKLMELLSGKA--- 972

Query: 978  LGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTF 1037
               G+ +G   Y T F    V  + E+L   G++  G + L  G TG+ + + I+ GP +
Sbjct: 973  ---GVVNGTYHYGTAFGGDQVKDVCEELAACGYNYMGKDMLTSGITGQPLSAYIYFGPIY 1029

Query: 1038 YQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERL 1097
            YQ+L HM  DK+  R  GP   LTRQP   R R GG++ GEMERDCLIA+GA+  L ERL
Sbjct: 1030 YQKLKHMVLDKMHARARGPRAALTRQPTEGRSREGGLRLGEMERDCLIAYGASMLLIERL 1089

Query: 1098 FTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQ 1157
               SD +++ +C  C         V+G     +G +C+ C S   +    +PY  KLL Q
Sbjct: 1090 MVSSDEFKVDVCTGCG--------VIGS----KG-WCQKCRSSKSMANIKIPYACKLLFQ 1136

Query: 1158 ELFSMGITLKFD 1169
            EL SM I  + D
Sbjct: 1137 ELQSMNIVPRLD 1148


>gi|326479873|gb|EGE03883.1| DNA-directed RNA polymerase III subunit RPC2 [Trichophyton equinum
            CBS 127.97]
          Length = 1210

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 375/1219 (30%), Positives = 565/1219 (46%), Gaps = 185/1219 (15%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN F++  L+K   S  E  +    DP            ++F  +
Sbjct: 93   AFLKVKGLVKQHIDSYNYFVEVQLKKIVQSSAE--IRSDIDPK---------FYIKFHDI 141

Query: 92   TLDKPSFF-AGNGGDEHD--MFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGR 148
             L  P        G + D  + P   RL++MTY++ + V  ++ V  ++RV  +      
Sbjct: 142  YLGTPRRTDEEQSGIKIDSTITPNECRLRDMTYAAPILVDFEY-VRGRQRVKRN------ 194

Query: 149  EQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAE 202
                             IGR+PVM++S  C +            +C  D GGYFI+ G E
Sbjct: 195  --------------GTAIGRMPVMLRSSKCVLSNKSAREMYTLHECPLDPGGYFIVNGTE 240

Query: 203  KVFVAQEQICLKRLWVSNSMGWTVAYKS------ENKRNRLIVRLVDMSKFEDIKGGEKV 256
            KV + QEQ+   R+ V       +   S      E K    I+          +K G   
Sbjct: 241  KVILVQEQLSKNRVIVETDPKKEIVQASVTSSSHERKSKSYII----------MKKGRIY 290

Query: 257  LSVYFLSTEIPIWILFFALGVSSDKEIVNL---IDFTCEDCSILNILFA---SIHDADNK 310
            L    L+ +IPI IL  A+G+ SDKE++ L   +D   ++   +N   A   SI+     
Sbjct: 291  LRHNVLNDDIPIVILLKAMGIQSDKEMLLLVAGVDMEYQEDFAINFEEAVKLSIYTQ--- 347

Query: 311  CDEFRKGRNALKYVDKLI----KGTTFPPG---------ESTEECMNTYLFPSLHGTKQK 357
                   + AL+Y+   I    K + F P          E+    + +++       + K
Sbjct: 348  -------QQALEYLGARIKINRKASGFGPARRNYVAEAIEAISSVIISHVQVQDMNFRPK 400

Query: 358  ARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLER-----------ELKVHIAH 406
            A ++ +M + +L A       D+RD   NKRLELAG+LL             ++K++I  
Sbjct: 401  ALYVTHMARRVLMAKLDPSLVDDRDYVGNKRLELAGQLLALLFEDLFKKFCFDIKMNIDK 460

Query: 407  ARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVAN 466
              K+  +    D Y      P+   +  + +T G++RA +TG WS    R ER +G+   
Sbjct: 461  VLKKPVRTEAFDAY------PV-VAIHGNHITQGMNRAIATGNWSLKRFRMER-AGVTHV 512

Query: 467  LGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV- 525
            L R + +  L  + R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL + 
Sbjct: 513  LSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALM 572

Query: 526  TGLVSTSILEPIFEQLFNSGMEKLADDASYSLGGK-------FKVFVDGDWIGVCKDSLS 578
            T + +    EP+ + +F  G E +      ++GG+       + VF++G  I + +    
Sbjct: 573  THITTNDEEEPVQKLVFILGAEDIQ-----TVGGRECFGQGAYIVFMNGSPIALTRRPKY 627

Query: 579  FVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE------NMGKIKSL 632
            F++  RR RR   +   V +  +  Q  V I  D GRI RPL++VE          + +L
Sbjct: 628  FLNAFRRLRRMGRISEFVSVFINHNQKCVHISTDDGRICRPLIIVEKKRSRVTARHLSAL 687

Query: 633  EGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLG 692
                  F   L +G++E V   EE D   A          E +     TH E++   +LG
Sbjct: 688  RNGTMDFDDFLSNGLVEYVDVNEENDANIAV--------YEREIDANTTHLEIEPFTVLG 739

Query: 693  LSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMIS 752
               G+IP+ +H+ + R  YQ      QAIG    N  +R+D+L + + YPQ+P+ +T   
Sbjct: 740  AVAGLIPYPHHNQSPRNTYQC-AMGKQAIGAIANNQFLRIDSLLYAMVYPQKPMVKTRTI 798

Query: 753  DCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRS 812
            +           +    +L  GQNA+VAV  + GY+ ED+LV+N+ S++RG  R +  R 
Sbjct: 799  E-----------LTNYDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 847

Query: 813  YKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD 872
            Y A + +     K R        G    K G    LD+DG   +G  +  G++ I K   
Sbjct: 848  YSANLKSHSNGTKDRLVGPTRENGVSIRKHGL---LDNDGLAAVGEKVSPGEVYINKETP 904

Query: 873  --------SGADHSIKLKHT---------ERGMVQKVVLSSNDDGKNFSVVSLRQVRSPC 915
                    +G+D  + +K+          +   + KV++S+ +       V  RQ R P 
Sbjct: 905  DNALSSGITGSDAGLPVKYNPTPQTYKLPDYSYIDKVMISTTEGESQLIKVQTRQTRRPE 964

Query: 916  LGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGI 975
            +GDKFSS HGQKGV+G +  Q + PFT  G+VPDI++NPH FPSR T G++LE   GK  
Sbjct: 965  VGDKFSSRHGQKGVVGIIAEQADMPFTDTGLVPDIIMNPHGFPSRMTVGKMLELVAGKA- 1023

Query: 976  AALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGP 1035
                 GI SG   Y TPF    V+ ++  L   GFS  G + L  G TGE +   +F GP
Sbjct: 1024 -----GIISGQFGYGTPFGGSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLTYYVFTGP 1078

Query: 1036 TFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHE 1095
             +YQ+L HM +DK+  R  GP   LTRQP   R R GG++ GEMERDCLIA+G +  L E
Sbjct: 1079 IYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLE 1138

Query: 1096 RLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLL 1155
            RL   SD +++ +C  C             G      +C+ C S   +VK  +PY AKLL
Sbjct: 1139 RLMISSDRHEVDVCESC-------------GFMGYSSWCQRCKSSVGVVKMVIPYAAKLL 1185

Query: 1156 CQELFSMGIT--LKFDTEF 1172
             QELFSM +   L+   EF
Sbjct: 1186 VQELFSMNVVARLRLQDEF 1204


>gi|255083755|ref|XP_002508452.1| predicted protein [Micromonas sp. RCC299]
 gi|226523729|gb|ACO69710.1| predicted protein [Micromonas sp. RCC299]
          Length = 1159

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 374/1194 (31%), Positives = 575/1194 (48%), Gaps = 150/1194 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+S+N  I   ++K   +     V    DP+       +Y +++ G+ 
Sbjct: 46   AFLKVRGLVRQHIDSFNYLINEEIKKIIAAKANEKVTCDTDPNFY----LKYTNIQVGKP 101

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQ-KRVTSDKFKTGREQ 150
            ++++  F         ++ P+  RL++MTY++ + V V+   YT+ K + ++  K G   
Sbjct: 102  SVEE-DFIV------EEITPQQCRLRDMTYAAPVTVDVE---YTRGKEIVTNTSKNG--- 148

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKV 204
                         + IGRIP+M++S  C + G  +      G+C  D GGYF++KG EKV
Sbjct: 149  ----------VGGVTIGRIPLMLRSSRCILTGKSEEELARLGECPLDPGGYFVVKGTEKV 198

Query: 205  FVAQEQICLKRLWV----SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVY 260
             + QEQ+   R+ +       +G +V   +  ++++  +          +K G+  L   
Sbjct: 199  ILIQEQLSKNRIIIDIDNKGEVGASVTSSTHERKSKTNIV---------VKHGKLYLRHN 249

Query: 261  FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFR--KGR 318
              + EIPI +   A+G  SD+E+V ++     D +  ++L  S+ +    C        +
Sbjct: 250  TFTDEIPIMVALKAMGCESDQEVVQMVG---PDTAYASLLLPSLLE----CSALAIFTQQ 302

Query: 319  NALKYVDKLIKGTT---------FPPGESTEECMNTYL----FPSLHGTKQKARFLGYMV 365
             AL+Y    ++  T             E+ +      L     P+ +  +QK  ++  M+
Sbjct: 303  QALEYCGGKVRMATRMMYSRNKRSKVDEARDILAGVVLAHVPVPA-YDFRQKCVYVAIMI 361

Query: 366  KCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQR--DLYGDR 423
            + +L A     + D++D + NKRLELAG+LL     +      KR+   L+R  D    +
Sbjct: 362  RRILHAMVDPTQVDDKDYYGNKRLELAGQLL----ALLFEDCFKRLNADLKRQADAVLSK 417

Query: 424  TVRPIEYYLDASI----LTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDL 479
            + R  ++ +   I    L+NGL  A S+G W+    R ER  G+   L R + +  L  +
Sbjct: 418  SNRATQFDIIKCIRQDTLSNGLEHAISSGNWTVKRFRMER-KGVTQVLSRLSFISALGMM 476

Query: 480  RRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFE 539
             R   Q + T KV   R   PS WG +C   TP+GE+CGLVKNL +   V+T   E    
Sbjct: 477  TRITSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGESCGLVKNLALMTHVTTDDEEEPLR 536

Query: 540  QLFNS-GMEKLADDASYSL--GGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQV 596
             L +  G+E L       L   G   VF++G  +GV +D   F S+ R  RRR  +   V
Sbjct: 537  SLAHVLGVEPLLLLVGQELHSPGSALVFLNGHILGVHQDPARFASDFRLLRRRGRVGEFV 596

Query: 597  EIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIEL 650
             +        V I  D GR+ RPLL+VEN         + +L+   +TF   L  G +E 
Sbjct: 597  SVHTT--TGNVYIASDGGRVCRPLLIVENGELLVKQVHLDALKAGRWTFNDFLTQGFVEY 654

Query: 651  VGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVL 710
            +   EE +   A          E +   + TH E++   LLG+  GIIP+ +H+ + R  
Sbjct: 655  LDVNEENNSYIAL--------YESEITPETTHLEIEPFTLLGVCAGIIPYPHHNQSPRNT 706

Query: 711  YQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPE 770
            YQ      QA+G    N   R+DTL + L YPQ+P+ +T   + +G    G         
Sbjct: 707  YQC-AMGKQAMGNIAFNQLNRMDTLMYLLVYPQKPIVKTKTIELIGYDRLG--------- 756

Query: 771  LYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSD 830
               GQNA VAV  + GY+ ED++VMNRASL+RG  R   +R Y   +     +   R+ D
Sbjct: 757  --AGQNATVAVMSYSGYDIEDAIVMNRASLDRGFGRCIVLRKYGCTIK----KYSNRTQD 810

Query: 831  DMVNFGKIQS-KIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA-------------- 875
             +V     Q+   GR   LD DG   +G  +  GD+ I K +                  
Sbjct: 811  RIVPPTPAQTGPNGRHRLLDKDGIAAVGEKISPGDVYINKQSPGNTRDPLPNPQAMPDSF 870

Query: 876  ----DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSL-RQVRSPCLGDKFSSMHGQKGVL 930
                  S K    E  +V KV+L+++D+G+ F+V  L R  R P +GDKFSS HGQKGV 
Sbjct: 871  YRPTAQSYKGPQGESCVVDKVMLTTSDEGQ-FNVKCLVRHTRRPEVGDKFSSRHGQKGVC 929

Query: 931  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYA 990
            G +  Q + PF+ +GI PD+++NPH FPSR T G+++E   GK       G+  G  +Y 
Sbjct: 930  GTIVEQSDLPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA------GLQDGKFKYG 983

Query: 991  TPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVK 1050
            T F   +V +++E L   GFS  G + ++ G TGE + + IF+GP +YQ+L HM  DK+ 
Sbjct: 984  TAFGGDTVTSLSEVLVEHGFSYNGKDLMHCGITGEPLVAYIFMGPVYYQKLKHMVLDKMH 1043

Query: 1051 FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICR 1110
             R  GP   LTRQP   R R GG++ GEMERDCLI +GAA  + ERL   SD ++  +C 
Sbjct: 1044 ARARGPRVVLTRQPTEGRARDGGLRLGEMERDCLIGYGAAMLILERLMISSDQFEAQVCT 1103

Query: 1111 KCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
             C  +     +  G GR +    C+ C  G  +    +PY  KLL QEL SM I
Sbjct: 1104 NCGLLG---YKHHGTGRNL----CQQCADGGTVSALKLPYACKLLFQELQSMNI 1150


>gi|384096572|gb|AFH66782.1| RNA polymerase II second largest subunit, partial [Rhizidium
            endosporangiatum]
          Length = 911

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 326/940 (34%), Positives = 487/940 (51%), Gaps = 96/940 (10%)

Query: 201  AEKVFVAQEQICLKRLWV-SNSMGWTVAYKSENKR---------NRLIVRLVDMSKFEDI 250
            +EKV +AQE++    ++V + +   T ++  E +          + L ++++  +K E  
Sbjct: 1    SEKVLIAQERMATNHVYVFAKAQPATYSFSCEIRSLAERGSKVASTLFIKMMH-AKGEKA 59

Query: 251  KGGEKV-LSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADN 309
             GG+ +  S+ ++ T++PI+I+F ALGV +D+EI+  I +   D  +L +L   I +A  
Sbjct: 60   AGGQVIRTSLPYIKTDVPIFIVFRALGVVADQEIMEKICYDFNDHPMLELLRPCIEEAF- 118

Query: 310  KCDEFRKGRNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSL----HGTKQKARF 360
                 +    AL ++    +G T    +       ++ +   + P +    H   +KA F
Sbjct: 119  ---VIQSQEVALTWIGN--RGNTIGVSQEKRIKYAQDILQKEMLPHVGTKAHTETRKAYF 173

Query: 361  LGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLY 420
             GYM+  LL A   RR+ D+RD F  KRL+LAG LL    ++      K +++ LQ+ + 
Sbjct: 174  FGYMIHRLLLAALERREFDDRDHFGKKRLDLAGALLSGLFRMLFRKLTKDVSRTLQKCME 233

Query: 421  GDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLR 480
             +R    I+  +DA+I+ NGL  + +TG W    K  +  +G+   L R     TL  LR
Sbjct: 234  TNRNFN-IKTAVDANIIKNGLKYSLATGNWGEQSKAMQARAGVGQVLNRYTFASTLSHLR 292

Query: 481  RTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFE 539
            R    +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +  +++      P  E
Sbjct: 293  RMNTPIGREGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMAVITVGCPTLPFVE 352

Query: 540  QLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIK 599
             L    ME L +    ++    KVF++G W+GV +D    V+ LR  RRR ++  +V I 
Sbjct: 353  FLEEWTMENLEEVGPSTIPDATKVFLNGVWVGVHRDPDMLVNTLRELRRRVDVNAEVSIV 412

Query: 600  RDELQSEVRIFMDAGRILRPLLVVENMG--------KIKSLEGKNY--TFQALLDHGIIE 649
            RD  ++E+R++ DAGRI RPL +V+N           I+ L  K    +F  LL  G+I 
Sbjct: 413  RDVAENELRLYTDAGRICRPLFIVDNETMTLKLTKEHIERLNDKETPASFNDLLCEGVIG 472

Query: 650  LVGTEEEEDCCTAW---------------------GIKYLLKDIEDKKPIKFTHCELDMS 688
            L+ TEEEE    A                      GI    K I       +THCE+  S
Sbjct: 473  LIDTEEEETIMIAMTPEDLDMSRRIVHGLPVVRHQGITERAKSIPTVH--NWTHCEIHPS 530

Query: 689  FLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFR 748
             +LG+   IIPF +H+ + R  YQS     QA+G   TN   R+DT+++ LFYPQ+PL  
Sbjct: 531  MILGICASIIPFPDHNQSPRNCYQSAM-GKQAMGIFNTNFHQRMDTMTNILFYPQKPLAA 589

Query: 749  TMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSE 808
            T   +            L   EL  GQNAIVA+  + GYNQEDSL+MN++S++RG+FRS 
Sbjct: 590  TRSME-----------YLRFRELPAGQNAIVAIGCYSGYNQEDSLIMNQSSIDRGLFRSL 638

Query: 809  HIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIG 868
            + R Y  + + KE      + +       ++ + G  + LD+DG    G  +   DI+IG
Sbjct: 639  YYRVY-MDTEKKEGLTTTETFEKPTRDSTLRLRHGTYEKLDEDGIIAPGVRVSGEDIIIG 697

Query: 869  KY---------------ADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRS 913
            K                  +  D S  LK TE G+V +VV+++N DG  F  V +R VR 
Sbjct: 698  KTVPIPLDSEELGQRTSTHTKRDASTPLKSTESGIVDQVVVTTNHDGFKFVKVRVRSVRV 757

Query: 914  PCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGK 973
            P +GDKF+S HGQKG  G     E+ PFT  GI PDI++NPHA PSR T G L+E  LGK
Sbjct: 758  PQIGDKFASRHGQKGTCGITYRMEDMPFTRDGITPDIIVNPHAIPSRMTIGHLVECLLGK 817

Query: 974  GIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFI 1033
             +A +     +G +  ATPF + +V  I+ +L   GF + G E LY+G TG  + + +F 
Sbjct: 818  -VATM-----TGREGDATPFTSVNVADISNELASYGFQQRGFEVLYNGHTGRKLNAQLFF 871

Query: 1034 GPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGG 1073
            GPT+YQRL HM +DK+  R  GP+  L RQPV  R R GG
Sbjct: 872  GPTYYQRLKHMVDDKIHLRARGPMQILVRQPVEGRSRDGG 911


>gi|326468641|gb|EGD92650.1| DNA-directed RNA polymerase III [Trichophyton tonsurans CBS 112818]
          Length = 1210

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 375/1219 (30%), Positives = 565/1219 (46%), Gaps = 185/1219 (15%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN F++  L+K   S  E  +    DP            ++F  +
Sbjct: 93   AFLKVKGLVKQHIDSYNYFVEVQLKKIVQSSAE--IRSDIDPK---------FYIKFHDI 141

Query: 92   TLDKPSFF-AGNGGDEHD--MFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGR 148
             L  P        G + D  + P   RL++MTY++ + V  ++ V  ++RV  +      
Sbjct: 142  YLGTPRRTDEEQSGIKIDSTITPNECRLRDMTYAAPILVDFEY-VRGRQRVKRN------ 194

Query: 149  EQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAE 202
                             IGR+PVM++S  C +            +C  D GGYFI+ G E
Sbjct: 195  --------------GTAIGRMPVMLRSSKCVLSNKSAREMYTLHECPLDPGGYFIVNGTE 240

Query: 203  KVFVAQEQICLKRLWVSNSMGWTVAYKS------ENKRNRLIVRLVDMSKFEDIKGGEKV 256
            KV + QEQ+   R+ V       +   S      E K    I+          +K G   
Sbjct: 241  KVILVQEQLSKNRVIVETDPKKEIVQASVTSSSHERKSKSYII----------MKKGRIY 290

Query: 257  LSVYFLSTEIPIWILFFALGVSSDKEIVNL---IDFTCEDCSILNILFA---SIHDADNK 310
            L    L+ +IPI IL  A+G+ SDKE++ L   +D   ++   +N   A   SI+     
Sbjct: 291  LRHNVLNDDIPIVILLKAMGIQSDKEMLLLVAGVDMEYQEDFAINFEEAVKLSIYTQ--- 347

Query: 311  CDEFRKGRNALKYVDKLI----KGTTFPPG---------ESTEECMNTYLFPSLHGTKQK 357
                   + AL+Y+   I    K + F P          E+    + +++       + K
Sbjct: 348  -------QQALEYLGARIKINRKASGFGPARRNYVAEAIEAISSVIISHVQVQDMNFRPK 400

Query: 358  ARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLER-----------ELKVHIAH 406
            A ++ +M + +L A       D+RD   NKRLELAG+LL             ++K++I  
Sbjct: 401  ALYVTHMARRVLMAKLDPSLVDDRDYVGNKRLELAGQLLALLFEDLFKKFCFDIKMNIDK 460

Query: 407  ARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVAN 466
              K+  +    D Y      P+   +  + +T G++RA +TG WS    R ER +G+   
Sbjct: 461  VLKKPVRTEAFDAY------PV-VAIHGNHITQGMNRAIATGNWSLKRFRMER-AGVTHV 512

Query: 467  LGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV- 525
            L R + +  L  + R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL + 
Sbjct: 513  LSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALM 572

Query: 526  TGLVSTSILEPIFEQLFNSGMEKLADDASYSLGGK-------FKVFVDGDWIGVCKDSLS 578
            T + +    EP+ + +F  G E +      ++GG+       + VF++G  I + +    
Sbjct: 573  THITTNDEEEPVQKLVFILGAEDIQ-----TVGGRECFGQGAYIVFMNGSPIALTRRPKY 627

Query: 579  FVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE------NMGKIKSL 632
            F++  RR RR   +   V +  +  Q  V I  D GRI RPL++VE          + +L
Sbjct: 628  FLNAFRRLRRMGRISEFVSVFINHNQKCVHISTDDGRICRPLIIVEKKRSRVTARHLSAL 687

Query: 633  EGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLG 692
                  F   L +G++E V   EE D   A          E +     TH E++   +LG
Sbjct: 688  RNGTMDFDDFLSNGLVEYVDVNEENDANIAV--------YEREIDANTTHLEIEPFTVLG 739

Query: 693  LSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMIS 752
               G+IP+ +H+ + R  YQ      QAIG    N  +R+D+L + + YPQ+P+ +T   
Sbjct: 740  AVAGLIPYPHHNQSPRNTYQC-AMGKQAIGAIANNQFLRIDSLLYAMVYPQKPMVKTRTI 798

Query: 753  DCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRS 812
            +           +    +L  GQNA+VAV  + GY+ ED+LV+N+ S++RG  R +  R 
Sbjct: 799  E-----------LTNYDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 847

Query: 813  YKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD 872
            Y A + +     K R        G    K G    LD+DG   +G  +  G++ I K   
Sbjct: 848  YSANLKSYSNGTKDRLVGPTRENGVSIRKHGL---LDNDGLAAVGEKVSPGEVYINKETP 904

Query: 873  --------SGADHSIKLKHT---------ERGMVQKVVLSSNDDGKNFSVVSLRQVRSPC 915
                    +G+D  + +K+          +   + KV++S+ +       V  RQ R P 
Sbjct: 905  DNALSSGITGSDAGLPVKYNPTPQTYKLPDYSYIDKVMISTTEGESQLIKVQTRQTRRPE 964

Query: 916  LGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGI 975
            +GDKFSS HGQKGV+G +  Q + PFT  G+VPDI++NPH FPSR T G++LE   GK  
Sbjct: 965  VGDKFSSRHGQKGVVGIIAEQADMPFTDTGLVPDIIMNPHGFPSRMTVGKMLELVAGKA- 1023

Query: 976  AALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGP 1035
                 GI SG   Y TPF    V+ ++  L   GFS  G + L  G TGE +   +F GP
Sbjct: 1024 -----GIISGQFGYGTPFGGSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLTYYVFTGP 1078

Query: 1036 TFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHE 1095
             +YQ+L HM +DK+  R  GP   LTRQP   R R GG++ GEMERDCLIA+G +  L E
Sbjct: 1079 IYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLE 1138

Query: 1096 RLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLL 1155
            RL   SD +++ +C  C             G      +C+ C S   +VK  +PY AKLL
Sbjct: 1139 RLMISSDRHEVDVCESC-------------GFMGYSSWCQRCKSSVGVVKMVIPYAAKLL 1185

Query: 1156 CQELFSMGIT--LKFDTEF 1172
             QELFSM +   L+   EF
Sbjct: 1186 VQELFSMNVVARLRLQDEF 1204


>gi|66517310|ref|XP_625037.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 1
            [Apis mellifera]
          Length = 1134

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 355/1195 (29%), Positives = 561/1195 (46%), Gaps = 157/1195 (13%)

Query: 28   KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMR 87
            K   +F    GLV   I+S+N FI   ++K   +  + + +   DP            ++
Sbjct: 30   KLVPAFLKGKGLVKQHIDSFNYFINVEIKKIVKANEKVLSDA--DP---------LFYVK 78

Query: 88   FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
            +  V +  P    G         P   RL+++ YS+ + V +++               G
Sbjct: 79   YLNVHVGLPDVEEGFNVTRSTT-PHECRLRDLNYSAPITVDIEY-------------IRG 124

Query: 148  REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGA 201
             +  I+         N++IGR+P+M++S  C + G       +  +C  D GGYFI+ G 
Sbjct: 125  HQPIIK--------NNLLIGRMPIMLRSSNCVLTGKSHFELAKMNECPHDPGGYFIVNGQ 176

Query: 202  EKVFVAQEQICLKRLWVS-NSMGWTVA----YKSENKRNRLIVRLVDMSKFEDIKGGEKV 256
            EKV + QEQ+   R+ +  +S G  VA       E K    IV           + G   
Sbjct: 177  EKVILIQEQMLRNRIILEEDSKGCIVASCNSVTHERKTKTNIVG----------RAGRYY 226

Query: 257  LSVYFLSTEIPIWILFFALGVSSDKEIVNLI----DF------TCEDCSILNILFASIHD 306
            +       +IP+ I+F A+G+ SD+EI+ LI    +F      + E+C +LN+       
Sbjct: 227  MRHNIFQDDIPVTIIFKAMGIVSDQEIMQLIGTEEEFMKKFAPSLEECHVLNVF------ 280

Query: 307  ADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVK 366
            A N+   F   +   K    +    T    ++    + +++       K KA ++  M++
Sbjct: 281  AQNQALRFLSNKRKQKRFSVIKSSITDEMKDALATNILSHVPVIDFNFKMKATYIALMIR 340

Query: 367  CLLQAYSGRRKCDNRDDFRNKRLELAGELLER-----------ELKVHIAHARKRMAKAL 415
             +++A S  +  D+RD + NKRLELAG LL             ELK  IA       KA 
Sbjct: 341  KVMKAQSDGKLVDDRDYYGNKRLELAGSLLSLMFEDLFKRFNWELK-QIADKNIPKIKAA 399

Query: 416  QRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQT 475
            Q D         I  ++    +TNGL+ A S+G W+    + ER  G+   L R + +  
Sbjct: 400  QFD---------IVKHMRQDQITNGLAFAISSGNWTIKRFKMER-HGVTQVLSRLSYISA 449

Query: 476  LVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-L 534
            L  + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T I  
Sbjct: 450  LGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEGCGLVKNLALMTHITTEIDE 509

Query: 535  EPIFEQLFNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL 592
            EPI    FN G+E +       +  K  + VF++G+ +G+ K+    V+  R  RR+  +
Sbjct: 510  EPIIRLAFNLGVENVNILGGEEINNKNVYMVFLNGNILGIVKNYQRLVNVFRLLRRKGLI 569

Query: 593  PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHG 646
               V I        ++I  D GR+ RP ++V+N         +K LE    +F+  L  G
Sbjct: 570  NGFVSIYTQHQHRCIQISSDGGRLCRPYIIVQNGDPLVQEEHVKLLEQGIRSFEDFLQDG 629

Query: 647  IIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHA 706
            +IE +   EE D   A+   ++ +        K TH E++   LLG+  G++P+ +H+ +
Sbjct: 630  LIEYLDVNEENDSSIAFNESHINE--------KTTHLEIEPFTLLGVCAGLVPYPHHNQS 681

Query: 707  RRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHIL 766
             R  YQ      QA+G    N   R+DTL + L YPQ P+ ++   +           ++
Sbjct: 682  PRNTYQCAM-GKQAMGTIGYNQRNRIDTLMYNLVYPQTPMVKSRTIE-----------LI 729

Query: 767  PRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKR 826
               +L  GQNA +AV  + GY+ ED+L++N+AS++RG  R    R+ K  +     Q   
Sbjct: 730  NFDKLPAGQNATIAVMSYSGYDIEDALILNKASIDRGFGRCLVYRNAKCTLKRYANQTYD 789

Query: 827  RSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSG------------ 874
            R    +++    +  + + + +D DG    G  +++  +++ K + +             
Sbjct: 790  RIMGPLID-ANTKKSVWKHEIIDSDGIAAPGEMVENRKVMVNKSSPAANIGPVNSGNVQT 848

Query: 875  ----ADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVL 930
                 D  +  K      ++KV++SSN +      + LRQ R P +GDKFSS HGQKGV+
Sbjct: 849  QTEYKDVPVVFKGPVPAYIEKVMISSNAEDAFLIKLLLRQTRRPEIGDKFSSRHGQKGVV 908

Query: 931  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYA 990
            G +  QE+ PF   GI PD+++NPH FPSR T G+L+E   GK       G+  G   Y 
Sbjct: 909  GLIVEQEDMPFNDYGICPDMIMNPHGFPSRMTVGKLIELLAGKA------GVIKGEFHYG 962

Query: 991  TPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVK 1050
            T F    V+ +  +L + GF+  G +  Y G TGE +++ I+ GP +YQ+L HM +DK+ 
Sbjct: 963  TAFGGSKVEDVCAELVKHGFNYLGKDFFYSGITGEPLQAYIYSGPVYYQKLKHMVQDKMH 1022

Query: 1051 FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICR 1110
             R  GP   LTRQP   R + GG++ GEMERDCLI +GA+  L ERL   SD++ + +C 
Sbjct: 1023 ARARGPRAVLTRQPTGGRAKEGGLRLGEMERDCLIGYGASMMLIERLMISSDAFDIDVCN 1082

Query: 1111 KCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
            KC             G      +C  C S   +   ++PY  KLL QEL SM I 
Sbjct: 1083 KC-------------GLMAYSGWCHSCRSSSCVSTISMPYACKLLFQELQSMNIV 1124


>gi|403275974|ref|XP_003929693.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Saimiri
            boliviensis boliviensis]
          Length = 1133

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 367/1185 (30%), Positives = 554/1185 (46%), Gaps = 146/1185 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYASMRFG 89
            +F    GLV   I+S+N FI   ++K        I++     +   +  W  +Y ++  G
Sbjct: 32   AFLKVKGLVKQHIDSFNYFINVEIKK--------IMKANEKVTSDADPMWYLKYLNIYVG 83

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
               +++ SF          + P   RL++MTYS+ + V +++              T   
Sbjct: 84   LPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEY--------------TRGS 123

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
            Q I +  L        IGR+P+M++S  C + G       +  +C  D GGYFI+KG EK
Sbjct: 124  QRIIRNALP-------IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEK 176

Query: 204  VFVAQEQICLKRLWVS----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            V + QEQ+   R+ V      ++G +V   +  K++R      +M+    +K G   L  
Sbjct: 177  VILIQEQLSKNRIIVEADRKGAVGASVTSSTHEKKSR-----TNMA----VKQGRFYLRH 227

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
              LS +IPI I+F A+GV SD+EIV +I     +  ++     S+ +   K   F +   
Sbjct: 228  NTLSEDIPIVIIFKAMGVESDQEIVQMIG---TEEHVMAAFGPSLEEC-QKAQIFTQ-MQ 282

Query: 320  ALKYVDKLIKGTTF----PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGR 375
            ALKY+   ++        P     EE     L  S   T    +   +  KC+  A   R
Sbjct: 283  ALKYIGNKVRRQRMWGGGPKKTKIEEARE--LLASTILTHVPVKEFNFRAKCIYTAVMVR 340

Query: 376  R--------KCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR- 426
            R        K D+RD + NKRLELAG+LL    +         M K   + +   R  + 
Sbjct: 341  RVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQF 400

Query: 427  PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
             +  ++    +TNG+  A STG WS    + +R  G+   L R + +  L  + R   Q 
Sbjct: 401  DVVKHMRQDQITNGMVNAISTGNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQF 459

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSG 545
            + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + + PI +   N G
Sbjct: 460  EKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLG 519

Query: 546  MEKL----ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
            +E +     ++ SY     F VF++G+ +GV +D    V+  R  RR   +   V I  +
Sbjct: 520  VEDVNLLCGEELSYP--NVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTN 577

Query: 602  ELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHGIIELVGTEE 655
                 V I  D GR+ RP ++V+          ++ L      F+  L   ++E +   E
Sbjct: 578  LTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNE 637

Query: 656  EEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQK 715
            E DC  A     + KD         TH E++   LLG+  G+IP+ +H+ + R  YQ   
Sbjct: 638  ENDCNIALYEHTINKDT--------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-A 688

Query: 716  HSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQ 775
               QA+G    N   R+DTL + L YPQ+P+ +T   +           ++   +L  GQ
Sbjct: 689  MGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIE-----------LIEFEKLPAGQ 737

Query: 776  NAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF 835
            NA VAV  + GY+ ED+LV+N+ASL+RG  R    ++ K  +     Q   +    M++ 
Sbjct: 738  NATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLD- 796

Query: 836  GKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA----------------DHSI 879
               +  I R + LD DG    G  +++  +++ K   +                  D  I
Sbjct: 797  AATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPI 856

Query: 880  KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENF 939
              K      ++KV++SSN +      + LRQ R P +GDKFSS HGQKGV G +  QE+ 
Sbjct: 857  TYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDM 916

Query: 940  PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVD 999
            PF   GI PDI++NPH FPSR T G+L+E   GK       G+  G   Y T F    V 
Sbjct: 917  PFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKA------GVLDGRFHYGTAFGGSKVK 970

Query: 1000 AITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHP 1059
             + E L R G++  G + +  G TGE + + I+ GP +YQ+L HM  DK+  R  GP   
Sbjct: 971  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030

Query: 1060 LTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVI 1119
            LTRQP   R R GG++ GEMERDCLI +GA+  L ERL   SD++++ +C KC       
Sbjct: 1031 LTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGKC------- 1083

Query: 1120 QRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
                  G      +C  C S   +    +PY  KLL QEL SM I
Sbjct: 1084 ------GLLGYSGWCHFCKSSRQVSSLRIPYACKLLFQELQSMNI 1122


>gi|357138000|ref|XP_003570586.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Brachypodium
            distachyon]
          Length = 1158

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 372/1208 (30%), Positives = 575/1208 (47%), Gaps = 169/1208 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+S+N FI  G++    +     +E   DPS       RY  +R G+ 
Sbjct: 44   AFLKVRGLVKEHIDSFNYFITKGIKNIVQANNR--IEARSDPSIY----LRYKDIRVGEP 97

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
            ++ +  F          + P   RL + TYS+ + V +++ V             G+   
Sbjct: 98   SV-QVDFRV------ETITPHFCRLTDRTYSAPVIVDIEYTV-------------GKTHV 137

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVF 205
            + ++       N IIG +P+M++S  C + G ++      G+C  D GGYF++KG EKV 
Sbjct: 138  VHRK------PNFIIGYMPIMLRSYACVLNGKDEAELARYGECPLDPGGYFVVKGNEKVI 191

Query: 206  VAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDM-----SKFEDIKGGEKV-LSV 259
            + QEQ+   R+ +           ++NK+ R+I  +        SK   +   EK+ L +
Sbjct: 192  LIQEQLSKNRIIID----------TDNKK-RVIASVTSSTHEVKSKTVIVMDKEKIYLQL 240

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
               +  IPI ++  A+G+ SD+EIV ++     D    ++L+ SI +  +  +     + 
Sbjct: 241  NQFTKPIPIIVVMKAMGIQSDQEIVQMVG---RDPRYGDLLYLSIQECAS--ERIYTQQQ 295

Query: 320  ALKYVDKLIKGTTFP-PGESTEECMNTYL-------FPSLHGT-KQKARFLGYMVKCLLQ 370
            AL+Y+D  +    FP PG   E    T L        P  +G  ++K  +   M++ +L 
Sbjct: 296  ALQYMDDKV---MFPGPGNVKEGRSKTLLRDVFVAHVPVENGNFREKCIYTAVMLRRMLD 352

Query: 371  AYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDRTVR 426
            A       D++D   NKRLEL+G+L+    E   K   + A  RM K    D+     + 
Sbjct: 353  AILNSDTFDDKDYVGNKRLELSGQLVSLLFEDLFKTMNSFAVDRMNK--NSDMARSSPLD 410

Query: 427  PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
              +  +   ++T GL RA STG W     +  R  G+   L R + + +L  + R   Q 
Sbjct: 411  FSQLIMQQDLITTGLERAISTGNWDIKRFKMHR-KGVSQVLSRLSYMASLGYMTRITPQF 469

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSG 545
            + T K    R   PS WG +C   TP+GE CGL KNL +   V+T   E P+    ++ G
Sbjct: 470  EKTRKTSGPRALQPSQWGMLCPCDTPEGEACGLTKNLALLTHVTTDQEEGPLMNLCYSLG 529

Query: 546  MEKLA--DDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDEL 603
            +EKL+          G F V  +G  +G  +    F   +R  R+  ++   V I  +E 
Sbjct: 530  VEKLSLLSGEEIHAPGSFLVMFNGLILGKHRQPQRFAKSMRTFRQSGKIGEFVSIFVNEK 589

Query: 604  QSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGIIELVGTEEE 656
            Q  + I  D GR+ RPL++ +  G+       +K L     +F   L  G+IE +   EE
Sbjct: 590  QHCIHIASDGGRVCRPLIIADK-GRSRVKEHHMKELRDGVRSFDDFLRDGLIEYLDVNEE 648

Query: 657  EDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKH 716
             +   A    Y   D +D +    TH E++   +LG+  G+IP+ +H+ + R  YQ    
Sbjct: 649  NNALIAL---YEHLDQDDVQRSSITHIEIEPMTILGVVAGLIPYPHHNQSPRNTYQC-AM 704

Query: 717  SSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQN 776
              QA+G    N   R D+L + L Y QRPL  T   + +G    G            GQN
Sbjct: 705  GKQAMGNIAYNQLFRADSLLYLLVYAQRPLLTTKTIELVGYDKLG-----------AGQN 753

Query: 777  AIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFG 836
            A VAV  + GY+ ED++VMN++SL+RG  R   ++ Y              +++   N G
Sbjct: 754  ATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIAMKKYTV------------TTEKYAN-G 800

Query: 837  KIQSKIGR-------------VDSLDDDGFPFIGANLQSGDIVIGK-------------- 869
             I  +I +             + +LD+DGF   G  +++ DI + K              
Sbjct: 801  TISDRIAKPQRDKDGALIKQNMRALDEDGFVAPGQIIRNHDIYVNKQTPKAIPKTPGTTL 860

Query: 870  ----YADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHG 925
                Y DS A +  K    E  +V +V+L S+ + K      +R  R P +GDKFSS HG
Sbjct: 861  TDRDYKDSPAVY--KGVDGETTVVDRVMLCSDTNDKLTIKCIIRHTRRPEVGDKFSSRHG 918

Query: 926  QKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSG 985
            QKGV G +  QE+FPF+ +GI PD+++NPH FPSR T G+++E   GK       G+  G
Sbjct: 919  QKGVCGTIVQQEDFPFSERGICPDLIMNPHGFPSRMTIGKMIELLGGKA------GVSCG 972

Query: 986  LKRYATPFATPS-----VDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQR 1040
               Y + F   S     VD I+  L + GFS  G + LY G  G  + + IF+GP +YQ+
Sbjct: 973  RFHYGSAFGESSGNADHVDDISHTLVKHGFSYNGKDFLYSGILGHPLEAYIFMGPIYYQK 1032

Query: 1041 LIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTL 1100
            L HM  DK+  R +GP   LTRQP   R R GG++ GEMERDCLIA+GA+  + ERL   
Sbjct: 1033 LKHMVLDKMHARASGPRVLLTRQPTEGRSRDGGLRLGEMERDCLIAYGASMLIFERLLLS 1092

Query: 1101 SDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELF 1160
            SD YQ+ +CRKC  +            K++  +C +C +G+++ K  +PY  KLL QEL 
Sbjct: 1093 SDPYQVQVCRKCGLLGYY-------NYKLKTSFCSMCKNGENMAKMRMPYACKLLFQELQ 1145

Query: 1161 SMGITLKF 1168
            SM +  + 
Sbjct: 1146 SMNVVPRL 1153


>gi|302657001|ref|XP_003020234.1| hypothetical protein TRV_05698 [Trichophyton verrucosum HKI 0517]
 gi|291184045|gb|EFE39616.1| hypothetical protein TRV_05698 [Trichophyton verrucosum HKI 0517]
          Length = 1196

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 374/1219 (30%), Positives = 564/1219 (46%), Gaps = 185/1219 (15%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN F++  L+K   S  E  +    DP            ++F  +
Sbjct: 79   AFLKVKGLVKQHIDSYNYFVEVQLKKIVQSSAE--IRSDIDPK---------FYIKFHDI 127

Query: 92   TLDKPSFF-AGNGGDEHD--MFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGR 148
             L  P        G + D  + P   RL++MTY++ + V  ++ V  ++RV  +      
Sbjct: 128  YLGTPRRTDEEQSGIKVDSTITPNECRLRDMTYAAPILVDFEY-VRGRQRVKRN------ 180

Query: 149  EQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAE 202
                             IGR+PVM++S  C +            +C  D GGYFI+ G E
Sbjct: 181  --------------GTAIGRMPVMLRSSKCVLSNKSAREMYTLHECPLDPGGYFIVNGTE 226

Query: 203  KVFVAQEQICLKRLWVSNSMGWTVAYKS------ENKRNRLIVRLVDMSKFEDIKGGEKV 256
            KV + QEQ+   R+ V       +   S      E K    I+          +K G   
Sbjct: 227  KVILVQEQLSKNRVIVETDPKKEIVQASVTSSSHERKSKSYII----------MKKGRIY 276

Query: 257  LSVYFLSTEIPIWILFFALGVSSDKEIVNL---IDFTCEDCSILNILFA---SIHDADNK 310
            L    L+ +IPI IL  A+G+ SDKE++ L   +D   ++   +N   A   SI+     
Sbjct: 277  LRHNVLNDDIPIVILLKAMGIQSDKEMLLLVAGVDMEYQEDFAINFEEAVKLSIYTQ--- 333

Query: 311  CDEFRKGRNALKYVDKLI----KGTTFPPG---------ESTEECMNTYLFPSLHGTKQK 357
                   + AL+Y+   I    K + F P          E+    + +++       + K
Sbjct: 334  -------QQALEYLGARIKINRKASGFGPARRNYVAEAIEAISSVIISHVQVQDMNFRPK 386

Query: 358  ARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLER-----------ELKVHIAH 406
            A ++ +M + +L A       D+RD   NKRLELAG+LL             ++K++I  
Sbjct: 387  ALYVTHMARRVLMAKLDPSLVDDRDYVGNKRLELAGQLLALLFEDLFKKFCFDIKMNIDK 446

Query: 407  ARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVAN 466
              K+  +    D Y      P+   +  + +T G++RA +TG WS    R ER +G+   
Sbjct: 447  VLKKPVRTEAFDAY------PV-VAIHGNHITQGMNRAIATGNWSLKRFRMER-AGVTHV 498

Query: 467  LGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV- 525
            L R + +  L  + R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL + 
Sbjct: 499  LSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALM 558

Query: 526  TGLVSTSILEPIFEQLFNSGMEKLADDASYSLGGK-------FKVFVDGDWIGVCKDSLS 578
            T + +    EP+ + +F  G E +      ++GG+       + VF++G  I + +    
Sbjct: 559  THITTNDEEEPVQKLVFTLGAEDIQ-----TVGGRECFGQGAYIVFMNGSPIALTRRPKY 613

Query: 579  FVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE------NMGKIKSL 632
            F++  RR RR   +   V +  +  Q  V +  D GRI RPL++VE          + +L
Sbjct: 614  FLNAFRRLRRMGRISEFVSVFINHNQKCVHVSTDDGRICRPLIIVEKKRSRVTARHLSAL 673

Query: 633  EGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLG 692
                  F   L +G++E V   EE D   A          E +     TH E++   +LG
Sbjct: 674  RNGTMDFDDFLSNGLVEYVDVNEENDANIAV--------YEREIDANTTHLEIEPFTVLG 725

Query: 693  LSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMIS 752
               G+IP+ +H+ + R  YQ      QAIG    N  +R+D+L + + YPQ+P+ +T   
Sbjct: 726  AVAGLIPYPHHNQSPRNTYQC-AMGKQAIGAIANNQFLRIDSLLYAMVYPQKPMVKTRTI 784

Query: 753  DCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRS 812
            +                +L  GQNA+VAV  + GY+ ED+LV+N+ S++RG  R +  R 
Sbjct: 785  ELTNY-----------DKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 833

Query: 813  YKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD 872
            Y A + +     K R        G    K G    LD+DG   +G  +  G++ I K   
Sbjct: 834  YSANLKSYSNGTKDRLVGPTRENGVSIRKHGL---LDNDGLAAVGEKVSPGEVYINKETP 890

Query: 873  --------SGADHSIKLKHT---------ERGMVQKVVLSSNDDGKNFSVVSLRQVRSPC 915
                    +G+D  + +K+          +   + KV++S+ +       V  RQ R P 
Sbjct: 891  DNALSSGITGSDAGLPVKYNPTPQTYKLPDYSYIDKVMISTTEGESQLIKVQTRQTRRPE 950

Query: 916  LGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGI 975
            +GDKFSS HGQKGV+G +  Q + PFT  G+VPDI++NPH FPSR T G++LE   GK  
Sbjct: 951  VGDKFSSRHGQKGVVGIIAEQADMPFTDTGLVPDIIMNPHGFPSRMTVGKMLELVAGKA- 1009

Query: 976  AALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGP 1035
                 GI SG   Y TPF    V+ ++  L   GFS  G + L  G TGE +   +F GP
Sbjct: 1010 -----GIISGQFGYGTPFGGSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLTYYVFTGP 1064

Query: 1036 TFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHE 1095
             +YQ+L HM +DK+  R  GP   LTRQP   R R GG++ GEMERDCLIA+G +  L E
Sbjct: 1065 IYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLE 1124

Query: 1096 RLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLL 1155
            RL   SD +++ +C  C             G      +C+ C S   +VK  +PY AKLL
Sbjct: 1125 RLMISSDRHEVDVCESC-------------GFMGYSGWCQRCKSSVGVVKMVIPYAAKLL 1171

Query: 1156 CQELFSMGIT--LKFDTEF 1172
             QELFSM +   L+   EF
Sbjct: 1172 VQELFSMNVVARLRLQDEF 1190


>gi|325094900|gb|EGC48210.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H88]
          Length = 1227

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 367/1214 (30%), Positives = 566/1214 (46%), Gaps = 174/1214 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN F++  L+K   +  E  +    DP+           +RF  +
Sbjct: 109  AFLKIKGLVKQHIDSYNYFVEVQLKKIVQASAE--IRSDVDPN---------FYIRFHDI 157

Query: 92   TLDKPSFFAGNGGDEHDMF----PRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
             L  P         + D+     P   RL++MTY++ + V  ++ V  ++RV  +     
Sbjct: 158  YLGNPRRADEEQDSKFDLASTITPNECRLRDMTYAAPILVDFEY-VRGRQRVKRN----- 211

Query: 148  REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGA 201
                              IGR+PVM++S  C +    + +      C  D GGYFI+ G 
Sbjct: 212  ---------------GTAIGRMPVMLRSSKCVLSNKSEAEMQLLQECPLDPGGYFIVNGT 256

Query: 202  EKVFVAQEQICLKRLWVSNSMGWTVAYKS------ENKRNRLIVRLVDMSKFEDIKGGEK 255
            EKV + QEQ+   R+ V   +   +   S      E K    I+          +K    
Sbjct: 257  EKVILVQEQLSKNRVIVETDLKKEIVQASVTSSSNERKSKSYII----------LKKDRI 306

Query: 256  VLSVYFLSTEIPIWILFFALGVSSDKEIVNL---IDFTCEDCSILNILFASIHDADNKCD 312
             +    LS ++PI IL  A+G+ SDKE++ L   ID T ++   +N   +        C 
Sbjct: 307  YMRHNVLSEDVPIVILLKAMGIQSDKEMLLLVAGIDSTFQEDFAINFEESV---KLGICT 363

Query: 313  EFRKGRNALKYVDKLIKGTTFPPG-------------ESTEECMNTYLFPSLHGTKQKAR 359
            + +    AL+Y+   IK    P               E+    + +++       + KA 
Sbjct: 364  QHQ----ALEYIGSRIKINRKPNSFGITRRNHVQEAIEAISSVIISHVVVENLNFRPKAL 419

Query: 360  FLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL-----------ERELKVHIAHAR 408
            ++ +M + +L A       D+RD   NKRLELAG+LL           + ++K++I    
Sbjct: 420  YVAHMARRVLMAKHDPSLVDDRDYVGNKRLELAGQLLALLFEDLFKKFQFDIKMNIDKVL 479

Query: 409  KRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLG 468
            K+  +  Q D YG   +         + +T G++RA STG WS    R ER +G+   L 
Sbjct: 480  KKPVRTEQFDAYGVVAIH-------GNHITQGMNRAISTGNWSLKRFRMER-AGVTHVLS 531

Query: 469  RANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TG 527
            R + +  L  L R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL + T 
Sbjct: 532  RLSYIAALGMLTRISSQFEKTRKVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTH 591

Query: 528  LVSTSILEPIFEQLFNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVSELRR 585
            + +    EP+ + +F  G E +       L G+  + +F++G  I + +    F++  RR
Sbjct: 592  ITTNDEEEPVRKLIFALGAEDVQTVGGRELHGQGAYIIFLNGSPIALTRRPKFFLNSFRR 651

Query: 586  KRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYT 638
             RR   +   + +  +  Q+ V +  D GRI RPL++VE+ GK       ++ L      
Sbjct: 652  LRRTGRVSEFISVFINHHQNAVHVATDDGRICRPLIIVED-GKSKVTNRHLRLLRNGTME 710

Query: 639  FQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGII 698
            F   L HG++E +   EE D   A          E+      TH E++   +LG   G+I
Sbjct: 711  FDDFLAHGLVEYLDCNEENDSYIAV--------YEEDITQSTTHLEIEPFTILGAVAGLI 762

Query: 699  PFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKP 758
            P+ +H+ + R  YQ      QAIG    N  +R+D+L + + YPQ+P+ +T   +     
Sbjct: 763  PYPHHNQSPRNTYQCAM-GKQAIGVIANNQFLRIDSLLYTMVYPQKPMVKTRTIE----- 816

Query: 759  GYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVD 818
                  ++   +L  GQ+A VAV  + GY+ ED+LV+N+ S++RG  R +  R Y   + 
Sbjct: 817  ------LIKYDKLPAGQSATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYSTNLK 870

Query: 819  NKEMQVKRR-SSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD----- 872
            +     K +    D  N   I+        LD+DG   +G  +  G++ I K        
Sbjct: 871  SYSNGTKDKLKGPDRENGVPIRKHA----LLDNDGLAAVGEKVNYGEVYINKVTPENALS 926

Query: 873  ---SGADHSIKL---------KHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKF 920
               +G+D    +         K  +   + KV++S+ +       V  RQ R P +GDKF
Sbjct: 927  SGITGSDAGRPIAYIPSPQTYKLPDPSYIDKVMISATEAENQLIKVQTRQTRVPEVGDKF 986

Query: 921  SSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGK 980
            SS HGQKGV+G +    + PF+  GIVPDI++NPH FPSR T G++LE   GK       
Sbjct: 987  SSRHGQKGVVGIIAEHADMPFSDLGIVPDIIMNPHGFPSRMTVGKMLELIAGKA------ 1040

Query: 981  GICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQR 1040
            GI SG   Y T F    V+ ++  L   GFS  G + L  G TGE + + +F+GP +YQ+
Sbjct: 1041 GILSGQFGYGTAFGGSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLPAYVFMGPIYYQK 1100

Query: 1041 LIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTL 1100
            L HM +DK+  R  GP   LTRQP   R R GG++ GEMERDCLIA+G +  L ERL   
Sbjct: 1101 LKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMIS 1160

Query: 1101 SDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELF 1160
            SD +++ +C  C  +  +              +C+ C +   +VK  +PY AKLL QELF
Sbjct: 1161 SDRHEVDVCENCGFMGYL-------------GWCQRCKTSRGVVKMVIPYAAKLLVQELF 1207

Query: 1161 SMGIT--LKFDTEF 1172
            SM +   LK   EF
Sbjct: 1208 SMNVVARLKLADEF 1221


>gi|225554621|gb|EEH02917.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces capsulatus
            G186AR]
          Length = 1227

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 367/1214 (30%), Positives = 566/1214 (46%), Gaps = 174/1214 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN F++  L+K   +  E  +    DP+           +RF  +
Sbjct: 109  AFLKIKGLVKQHIDSYNYFVEVQLKKIVQASAE--IRSDVDPN---------FYIRFHDI 157

Query: 92   TLDKPSFFAGNGGDEHDMF----PRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
             L  P         + D+     P   RL++MTY++ + V  ++ V  ++RV  +     
Sbjct: 158  YLGNPRRADEEQDSKFDLASTITPNECRLRDMTYAAPILVDFEY-VRGRQRVKRN----- 211

Query: 148  REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGA 201
                              IGR+PVM++S  C +    + +      C  D GGYFI+ G 
Sbjct: 212  ---------------GTAIGRMPVMLRSSKCVLSNKSEAEMQLLQECPLDPGGYFIVNGT 256

Query: 202  EKVFVAQEQICLKRLWVSNSMGWTVAYKS------ENKRNRLIVRLVDMSKFEDIKGGEK 255
            EKV + QEQ+   R+ V   +   +   S      E K    I+          +K    
Sbjct: 257  EKVILVQEQLSKNRVIVETDLKKEIVQASVTSSSNERKSKSYII----------LKKDRI 306

Query: 256  VLSVYFLSTEIPIWILFFALGVSSDKEIVNL---IDFTCEDCSILNILFASIHDADNKCD 312
             +    LS ++PI IL  A+G+ SDKE++ L   ID T ++       FA   +   K  
Sbjct: 307  YMRHNVLSEDVPIVILLKAMGIQSDKEMLLLVAGIDSTFQED------FAINFEESVKLG 360

Query: 313  EFRKGRNALKYVDKLIKGTTFPPG-------------ESTEECMNTYLFPSLHGTKQKAR 359
             + +   AL+Y+   IK    P               E+    + +++       + KA 
Sbjct: 361  IYTQ-HQALEYIGSRIKINRKPNSFGITRRNHVQEAIEAISSVIISHVVVENLNFRPKAL 419

Query: 360  FLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL-----------ERELKVHIAHAR 408
            ++ +M + +L A       D+RD   NKRLELAG+LL           + ++K++I    
Sbjct: 420  YVAHMARRVLMAKHDPSLVDDRDYVGNKRLELAGQLLALLFEDLFKKFQFDIKMNIDKVL 479

Query: 409  KRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLG 468
            K+  +  Q D YG   +         + +T G++RA STG WS    R ER +G+   L 
Sbjct: 480  KKPVRTEQFDAYGVVAIH-------GNHITQGMNRAISTGNWSLKRFRMER-AGVTHVLS 531

Query: 469  RANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TG 527
            R + +  L  + R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL + T 
Sbjct: 532  RLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTH 591

Query: 528  LVSTSILEPIFEQLFNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVSELRR 585
            + +    EP+ + +F  G E +       L G+  + +F++G  I + +    F++  RR
Sbjct: 592  ITTNDEEEPVRKLIFALGAEDVQTVGGRELHGQGAYIIFLNGSPIALTRRPKFFLNSFRR 651

Query: 586  KRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYT 638
             RR   +   + +  +  Q+ V +  D GRI RPL++VE+ GK       ++ L      
Sbjct: 652  LRRTGRVSEFISVFINHHQNAVHVATDDGRICRPLIIVED-GKSKVTNRHLRLLRNGTME 710

Query: 639  FQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGII 698
            F   L HG++E +   EE D   A          E+      TH E++   +LG   G+I
Sbjct: 711  FDDFLAHGLVEYLDCNEENDSYIAV--------YEEDITQSTTHLEIEPFTILGAVAGLI 762

Query: 699  PFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKP 758
            P+ +H+ + R  YQ      QAIG    N  +R+D+L + + YPQ+P+ +T   +     
Sbjct: 763  PYPHHNQSPRNTYQCAM-GKQAIGAIANNQFLRIDSLLYTMVYPQKPMVKTRTIE----- 816

Query: 759  GYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVD 818
                  ++   +L  GQ+A VAV  + GY+ ED+LV+N+ S++RG  R +  R Y   + 
Sbjct: 817  ------LIKYDKLPAGQSATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYSTNLK 870

Query: 819  NKEMQVKRR-SSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD----- 872
            +     K +    D  N   I+        LD+DG   +G  +  G++ I K        
Sbjct: 871  SYSNGTKDKLKGPDRENGVPIRKHA----LLDNDGLAAVGEKVNHGEVYINKVTPENALS 926

Query: 873  ---SGADHSIKL---------KHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKF 920
               +G+D    +         K  +   + KV++S+ +       V  RQ R P +GDKF
Sbjct: 927  SGITGSDAGRPIAYIPSPQTYKLPDPSYIDKVMISATEAENQLIKVQTRQTRVPEVGDKF 986

Query: 921  SSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGK 980
            SS HGQKGV+G +    + PF+  GIVPDI++NPH FPSR T G++LE   GK       
Sbjct: 987  SSRHGQKGVVGIIAEHADMPFSDLGIVPDIIMNPHGFPSRMTVGKMLELIAGKA------ 1040

Query: 981  GICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQR 1040
            GI SG   Y T F    V+ ++  L   GFS  G + L  G TGE + + +F+GP +YQ+
Sbjct: 1041 GILSGQFGYGTAFGGSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLPAYVFMGPIYYQK 1100

Query: 1041 LIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTL 1100
            L HM +DK+  R  GP   LTRQP   R R GG++ GEMERDCLIA+G +  L ERL   
Sbjct: 1101 LKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMIS 1160

Query: 1101 SDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELF 1160
            SD +++ +C  C  +  +              +C+ C +   +VK  +PY AKLL QELF
Sbjct: 1161 SDRHEVDVCENCGFMGYL-------------GWCQRCKTSRGVVKMVIPYAAKLLVQELF 1207

Query: 1161 SMGIT--LKFDTEF 1172
            SM +   LK   EF
Sbjct: 1208 SMNVVARLKLADEF 1221


>gi|302505599|ref|XP_003014506.1| hypothetical protein ARB_07068 [Arthroderma benhamiae CBS 112371]
 gi|291178327|gb|EFE34117.1| hypothetical protein ARB_07068 [Arthroderma benhamiae CBS 112371]
          Length = 1196

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 374/1219 (30%), Positives = 564/1219 (46%), Gaps = 185/1219 (15%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN F++  L+K   S  E  +    DP            ++F  +
Sbjct: 79   AFLKVKGLVKQHIDSYNYFVEVQLKKIVQSSAE--IRSDIDPK---------FYIKFHDI 127

Query: 92   TLDKPSFF-AGNGGDEHD--MFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGR 148
             L  P        G + D  + P   RL++MTY++ + V  ++ V  ++RV  +      
Sbjct: 128  YLGTPRRTDEEQSGIKVDSTITPNECRLRDMTYAAPILVDFEY-VRGRQRVKRN------ 180

Query: 149  EQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAE 202
                             IGR+PVM++S  C +            +C  D GGYFI+ G E
Sbjct: 181  --------------GTAIGRMPVMLRSSKCVLSNKSAREMYTLHECPLDPGGYFIVNGTE 226

Query: 203  KVFVAQEQICLKRLWVSNSMGWTVAYKS------ENKRNRLIVRLVDMSKFEDIKGGEKV 256
            KV + QEQ+   R+ V       +   S      E K    I+          +K G   
Sbjct: 227  KVILVQEQLSKNRVIVETDPKKEIVQASVTSSSHERKSKSYII----------MKKGRIY 276

Query: 257  LSVYFLSTEIPIWILFFALGVSSDKEIVNL---IDFTCEDCSILNILFA---SIHDADNK 310
            L    L+ +IPI IL  A+G+ SDKE++ L   +D   ++   +N   A   SI+     
Sbjct: 277  LRHNVLNDDIPIVILLKAMGIQSDKEMLLLVAGVDMEYQEDFAINFEEAVKLSIYTQ--- 333

Query: 311  CDEFRKGRNALKYVDKLI----KGTTFPPG---------ESTEECMNTYLFPSLHGTKQK 357
                   + AL+Y+   I    K + F P          E+    + +++       + K
Sbjct: 334  -------QQALEYLGARIKINRKASGFGPARRNYVAEAIEAISSVIISHVQVQDMNFRPK 386

Query: 358  ARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLER-----------ELKVHIAH 406
            A ++ +M + +L A       D+RD   NKRLELAG+LL             ++K++I  
Sbjct: 387  ALYVTHMARRVLMAKLDPSLVDDRDYVGNKRLELAGQLLALLFEDLFKKFCFDIKMNIDK 446

Query: 407  ARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVAN 466
              K+  +    D Y      P+   +  + +T G++RA +TG WS    R ER +G+   
Sbjct: 447  VLKKPVRTEAFDAY------PV-VAIHGNHITQGMNRAIATGNWSLKRFRMER-AGVTHV 498

Query: 467  LGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV- 525
            L R + +  L  + R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL + 
Sbjct: 499  LSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALM 558

Query: 526  TGLVSTSILEPIFEQLFNSGMEKLADDASYSLGGK-------FKVFVDGDWIGVCKDSLS 578
            T + +    EP+ + +F  G E +      ++GG+       + VF++G  I + +    
Sbjct: 559  THITTNDEEEPVQKLVFTLGAEDIQ-----TVGGRECFGQGAYIVFMNGSPIALTRRPKY 613

Query: 579  FVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE------NMGKIKSL 632
            F++  RR RR   +   V +  +  Q  V +  D GRI RPL++VE          + +L
Sbjct: 614  FLNAFRRLRRMGRISEFVSVFINHNQKCVHVSTDDGRICRPLIIVEKKRSRVTARHLSAL 673

Query: 633  EGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLG 692
                  F   L +G++E V   EE D   A          E +     TH E++   +LG
Sbjct: 674  RNGTMDFDDFLSNGLVEYVDVNEENDANIAV--------YEREIDANTTHLEIEPFTVLG 725

Query: 693  LSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMIS 752
               G+IP+ +H+ + R  YQ      QAIG    N  +R+D+L + + YPQ+P+ +T   
Sbjct: 726  AVAGLIPYPHHNQSPRNTYQC-AMGKQAIGAIANNQFLRIDSLLYAMVYPQKPMVKTRTI 784

Query: 753  DCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRS 812
            +                +L  GQNA+VAV  + GY+ ED+LV+N+ S++RG  R +  R 
Sbjct: 785  ELTNY-----------DKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 833

Query: 813  YKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD 872
            Y A + +     K R        G    K G    LD+DG   +G  +  G++ I K   
Sbjct: 834  YSANLKSYSNGTKDRLVGPTRENGVSIRKHGL---LDNDGLAAVGEKVSPGEVYINKETP 890

Query: 873  --------SGADHSIKLKHT---------ERGMVQKVVLSSNDDGKNFSVVSLRQVRSPC 915
                    +G+D  + +K+          +   + KV++S+ +       V  RQ R P 
Sbjct: 891  DNALSSGITGSDAGLPVKYNPTPQTYKLPDYSYIDKVMISTTEGESQLIKVQTRQTRRPE 950

Query: 916  LGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGI 975
            +GDKFSS HGQKGV+G +  Q + PFT  G+VPDI++NPH FPSR T G++LE   GK  
Sbjct: 951  VGDKFSSRHGQKGVVGIIAEQADMPFTDTGLVPDIIMNPHGFPSRMTVGKMLELVAGKA- 1009

Query: 976  AALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGP 1035
                 GI SG   Y TPF    V+ ++  L   GFS  G + L  G TGE +   +F GP
Sbjct: 1010 -----GIISGQFGYGTPFGGSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLTYYVFTGP 1064

Query: 1036 TFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHE 1095
             +YQ+L HM +DK+  R  GP   LTRQP   R R GG++ GEMERDCLIA+G +  L E
Sbjct: 1065 IYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLE 1124

Query: 1096 RLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLL 1155
            RL   SD +++ +C  C             G      +C+ C S   +VK  +PY AKLL
Sbjct: 1125 RLMISSDRHEVDVCESC-------------GFMGYSGWCQRCKSSVGVVKMVIPYAAKLL 1171

Query: 1156 CQELFSMGIT--LKFDTEF 1172
             QELFSM +   L+   EF
Sbjct: 1172 VQELFSMNVVARLRLQDEF 1190


>gi|308497698|ref|XP_003111036.1| hypothetical protein CRE_04747 [Caenorhabditis remanei]
 gi|308242916|gb|EFO86868.1| hypothetical protein CRE_04747 [Caenorhabditis remanei]
          Length = 1154

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 367/1209 (30%), Positives = 561/1209 (46%), Gaps = 165/1209 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETI--VEPGYDPSKKGEGEWRYASMRFG 89
            +F    GLV   + S++ F+   ++    S  +      P +          +Y  +R G
Sbjct: 34   AFLKVRGLVKQHLVSFDHFVNIEIRNIMQSNQKITSDANPNF--------YLKYLDIRVG 85

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
                  PS   G       + P+  RL++MTYS+ + V +++    Q+    D       
Sbjct: 86   N-----PSSEEGLNMTHDKITPQECRLRDMTYSAPISVDIEYTRGNQRVFKKD------- 133

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEK 203
                          +IIGR+P+M++S  C ++ + +       +C +D GGYF++KG+EK
Sbjct: 134  --------------LIIGRMPIMLRSSKCILRDLAEEELARVQECPYDPGGYFVVKGSEK 179

Query: 204  VFVAQEQICLKRLWV----SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            V + QEQ+   R+ V    S  +   V   +  ++++  V +         K G+  +  
Sbjct: 180  VILIQEQLSKNRIMVGRNSSKELQCEVLSSTSERKSKTYVTM---------KKGKYSVRH 230

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
              L+ ++P+ I+F A+GV SD +IV+ I    +  S     FA   +       + + + 
Sbjct: 231  NQLTDDVPVSIIFKAMGVESDYDIVSTIGHEEKYVSA----FAQTLEECINAGVYTQ-QQ 285

Query: 320  ALKYVDKLIKGTTF---------------PPGEST-----EECMNTYLFPSLHGTKQKAR 359
            AL YV   +K   F               PP E          M T++       K KA 
Sbjct: 286  ALAYVTSKVKARKFTPFGSLPGTSVSVLTPPKEHEAVDFLSNSMITHIACPDGNFKMKAI 345

Query: 360  FLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKAL 415
            +LG M + L+Q   G  + D+RD + NKRLELAG LL    E   K   +  ++    AL
Sbjct: 346  YLGLMTRRLIQTELGENELDDRDFYGNKRLELAGSLLALLFEDVFKRFNSELKRIADNAL 405

Query: 416  QRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQT 475
             + +        I  ++   ++TN +  A STG W     R ER+ G+   L R + +  
Sbjct: 406  MKTMAAPLD---IVKHMRQDMITNTIVNAMSTGNWIIKRFRMERL-GVTQVLSRLSYISA 461

Query: 476  LVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE 535
            L  + R     + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T   E
Sbjct: 462  LGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALISHITTDSDE 521

Query: 536  -PIFEQLFNSGMEKLADDASYSLGGKFK---VFVDGDWIGVCKDSLSFVSELRRKRRRKE 591
             P+   L NSG+E L  +  +S   K +   +F++G  IG   D    V  +R  RR   
Sbjct: 522  KPVLRLLLNSGVEDL-HNVHFSHVNKPENTLIFLNGVLIGTAVDPERVVRAVRDLRRSGL 580

Query: 592  LPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLD 644
            L   V + R      V I  D GR+ RP ++V+N GK       ++ L+     F+  +D
Sbjct: 581  LSEFVSVSRSITNRSVFISSDGGRLCRPYIIVKN-GKPMLTQDHVQQLKEGKRIFEDFVD 639

Query: 645  HGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHD 704
             GI+E +   E  D         L+   E +   + TH E++   LLG+  G+IP+ +H+
Sbjct: 640  DGIVEYLDVNEMNDA--------LIAVYEKEIGPETTHLEIEPFTLLGVCAGLIPYPHHN 691

Query: 705  HARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNH 764
             + R  YQ      QA+G    N   R+D++ + L YPQRPL ++   +           
Sbjct: 692  QSPRNTYQC-AMGKQAMGTIAYNQQKRIDSIMYLLCYPQRPLVKSKTIE----------- 739

Query: 765  ILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQV 824
            +    +L  G N I+AV  + GY+ ED+LV+N+ASL+RG  R    +  K  V     Q 
Sbjct: 740  LTNFEKLPAGANGIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHVKGTVRKYPNQT 799

Query: 825  KRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKY-----ADSGA---- 875
              R     ++    +  I +  +LD +G  F GA +     +I K+      +SG     
Sbjct: 800  FDRLLGPALD-PNTRLPISKHKNLDQEGIVFAGARILPKQTIINKHMPVVSGESGPGPSA 858

Query: 876  ---------------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKF 920
                           D SI  K       ++V+L+ N+D  +   V LRQ R P LGDKF
Sbjct: 859  SANTIGIAGRQVDYKDVSISYKTPTPSYAERVLLTYNEDEAHLIKVLLRQTRRPELGDKF 918

Query: 921  SSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGK 980
            SS HGQKGV G +  QE+ PF   G+VPD+++NPH +PSR T G+L+E   GK       
Sbjct: 919  SSRHGQKGVCGLIAQQEDMPFNDLGMVPDMIMNPHGYPSRMTVGKLMELLSGKA------ 972

Query: 981  GICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQR 1040
            G+ +G   Y T F    V  + E+L   G++  G + L  G TG+ + + I+ GP +YQ+
Sbjct: 973  GVMNGTYHYGTAFGGDQVKDVCEELAARGYNYMGKDMLTSGITGQSLSAYIYFGPIYYQK 1032

Query: 1041 LIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTL 1100
            L HM  DK+  R  GP   LTRQP   R R GG++ GEMERDCLIA+GA+  L ERL   
Sbjct: 1033 LKHMVLDKMHARARGPRAALTRQPTEGRSREGGLRLGEMERDCLIAYGASMLLIERLMVS 1092

Query: 1101 SDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELF 1160
            SD +++ +C  C         V+G     +G +C+ C S   +    +PY  KLL QEL 
Sbjct: 1093 SDEFKVDVCTGCG--------VIGS----KG-WCQKCRSSKSMANIKIPYACKLLFQELQ 1139

Query: 1161 SMGITLKFD 1169
            SM I  + D
Sbjct: 1140 SMNIVPRLD 1148


>gi|308799767|ref|XP_003074664.1| RNA polymerase III subunit RPC2 (ISS) [Ostreococcus tauri]
 gi|116000835|emb|CAL50515.1| RNA polymerase III subunit RPC2 (ISS) [Ostreococcus tauri]
          Length = 2569

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 369/1215 (30%), Positives = 581/1215 (47%), Gaps = 174/1215 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+S+N  +   ++K   +     V    DP+       +Y ++  G+ 
Sbjct: 55   AFLKVRGLVRQHIDSFNYLVNEEIKKIVRAKANERVTCDSDPNFY----LKYTNIHVGRP 110

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQ-KRVTSDKFKTGREQ 150
            ++++            ++ P+  RL++MTY++ + V V+   YT+ K + + + K G   
Sbjct: 111  SVEEDYVV-------EEITPQQCRLRDMTYAAPITVDVE---YTRGKEIVTRQQKNG--- 157

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKV 204
                         I+IGRIP+M++S  C + G  +      G+C  D GGYFI+KG EKV
Sbjct: 158  ----------VGGIVIGRIPLMLRSSRCVLTGKNEEELARLGECPLDPGGYFIVKGVEKV 207

Query: 205  FVAQEQICLKRLWV----SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVY 260
             + QEQ+   R+ +       +G +V   +  ++++  +          +K G+  L   
Sbjct: 208  ILIQEQLSKNRIIIDVDNKGEIGASVTSSTHERKSKTNIV---------VKHGKLYLRHN 258

Query: 261  FLSTEIPIWILFFALGVSSDKEIVNLIDF----------TCEDCSILNILFASIHDADNK 310
              + +I I I+  A+G+ SD+E V++I            T ++C    I   ++  A   
Sbjct: 259  TCADDIAIMIVLKAMGMESDQEAVHMIGSDPTYAMLLAPTLQECHASGIF--TMQQALEY 316

Query: 311  CDEFRK-----------------GRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHG 353
            C    +                 GR+ +     ++ G            +  Y F     
Sbjct: 317  CASKVRVVKMQSPRTQIGGARTYGRSRIDEARDILAGVVL-----AHVPVVAYDF----- 366

Query: 354  TKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAK 413
             +QK  ++  MV+ +L A     + D++D + NKRLELAG+L+     +      KR+  
Sbjct: 367  -RQKCAYISIMVRRILNALLDPTQVDDKDYYGNKRLELAGQLI----ALLFEDCFKRLNA 421

Query: 414  ALQR--DLYGDRTVRPIEYYLDASI----LTNGLSRAFSTGAWSHPFKRTERISGIVANL 467
             L+R  D    +  R  ++ +   I    L+NGL  A S+G W+    R ER  G+   L
Sbjct: 422  DLKRQADAVLSKANRATQFDILKCIRQDTLSNGLEHAISSGNWTVKRFRMER-KGVTQVL 480

Query: 468  GRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTG 527
             R + +  L  + R   Q + T KV   R   PS WG +C   TP+GE+CGLVKNL +  
Sbjct: 481  SRLSFISALGMMTRITSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGESCGLVKNLALMT 540

Query: 528  LVSTSILEPIFEQLFNS-GMEKL----ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSE 582
             V+T   E    +L ++ G+E L    A +     G    V ++G  +GV     +F   
Sbjct: 541  HVTTDDEEEPLRRLAHALGVEPLTWLNAGEMHSPQGAH--VLMNGSLLGVHAQPEAFAHA 598

Query: 583  LRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE------NMGKIKSLEGKN 636
             R+ RR   +   V +   +    V I  D GR+ RPL+++E          ++ L+  +
Sbjct: 599  FRKLRRAGRVGEFVSVYAAD--GCVYISSDGGRVCRPLIIIERGEPLLTQEHLEELKDGH 656

Query: 637  YTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCG 696
             TF   L  G++E +   EE D   A          ED+   + TH E++   LLG+  G
Sbjct: 657  RTFTDFLREGLVEYLDVNEENDSYIAL--------YEDEMNEETTHLEIEPFTLLGVCAG 708

Query: 697  IIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLG 756
            IIP+ +H+ + R  YQ      QA+G    N   R+DTL + L YPQ+P+ +T   + +G
Sbjct: 709  IIPYPHHNQSPRNTYQC-AMGKQAMGNIAFNQLNRMDTLMYLLVYPQKPIVKTKTIELIG 767

Query: 757  KPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAE 816
                G            GQNA +AV  + GY+ ED++VMNRASL+RG  R   +R Y  +
Sbjct: 768  YDRLG-----------AGQNATIAVMSYSGYDIEDAIVMNRASLDRGFGRCTVLRKYSTQ 816

Query: 817  VDNKEMQVKRRSSDDMVNFGKIQ--SKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSG 874
            V     +   R+ D ++   + Q  ++ GR   LD DG   +G  ++ GDI + K +   
Sbjct: 817  VK----KYSNRTMDRIIGPKEDQRANENGRYHLLDGDGIAAVGGRIKPGDIYVNKQSPIN 872

Query: 875  ADHSIKLKHT------------------ERGMVQKVVLSSNDDGKNFSVVSL-RQVRSPC 915
                +   H                   E  +V KV+L+  D+G+ F++ +L RQ R P 
Sbjct: 873  TRDPMANPHGMPDTMYRSNPLSYKGPPGETAIVDKVLLTMTDEGQ-FNIKTLVRQTRRPE 931

Query: 916  LGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGI 975
            +GDKFSS HGQKGV G +  QE+FPF+ +GI PD+++NPH FPSR T G+++E   GK  
Sbjct: 932  VGDKFSSRHGQKGVCGVILDQEDFPFSERGITPDLIMNPHGFPSRMTVGKMIELLGGKA- 990

Query: 976  AALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGP 1035
                 G+ +G     T FA  SV+AI + L  AGFS  G + L+ G TGE +   +F+GP
Sbjct: 991  -----GLENGRFHDGTAFAGDSVEAIQQTLVEAGFSHKGKDMLHCGITGEALEVNVFMGP 1045

Query: 1036 TFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHE 1095
             +YQ+L HM +DK+  R  GP   LTRQP   R R GG++ GEMERDCLI +GA+  + E
Sbjct: 1046 VYYQKLKHMVQDKMHARARGPRVVLTRQPTEGRARDGGLRLGEMERDCLIGYGASQLILE 1105

Query: 1096 RLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGP-YCRICDSGDDIVKANVPYGAKL 1154
            RL   SD ++  +C KC         ++G    + G   C +C +  ++    +PY AKL
Sbjct: 1106 RLMISSDQFEAQVCTKCG--------LLGFQHHITGKNACTLCKTEAEVATLKLPYAAKL 1157

Query: 1155 LCQELFSMGITLKFD 1169
            L QEL S  I  + +
Sbjct: 1158 LFQELQSCNIAPRIN 1172


>gi|354486330|ref|XP_003505334.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Cricetulus
            griseus]
 gi|344253234|gb|EGW09338.1| DNA-directed RNA polymerase III subunit RPC2 [Cricetulus griseus]
          Length = 1133

 Score =  481 bits (1238), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 369/1185 (31%), Positives = 557/1185 (47%), Gaps = 146/1185 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYASMRFG 89
            +F    GLV   I+S+N FI   ++K        I++     +   +  W  +Y ++  G
Sbjct: 32   AFLKVKGLVKQHIDSFNYFINVEIKK--------IMKANEKVTSDADPMWYLKYLNIYVG 83

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
               +++ SF          + P   RL++MTYS+ + V +++              T   
Sbjct: 84   LPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEY--------------TRGS 123

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
            Q I +  L        IGR+P+M++S  C + G       +  +C  D GGYFI+KG EK
Sbjct: 124  QRIIRNALP-------IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEK 176

Query: 204  VFVAQEQICLKRLWVS----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            V + QEQ+   R+ V      ++G +V   +  K++R      +M+    +K G   L  
Sbjct: 177  VILIQEQLSKNRIIVEADRKGAVGASVTSSTHEKKSR-----TNMA----VKQGRFYLRH 227

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
              LS +IPI I+F A+GV SD+EIV +I     +  ++     S+ +   K   F +   
Sbjct: 228  NTLSEDIPIVIIFKAMGVESDQEIVQMIG---TEEHVMAAFGPSLEEC-QKAQIFTQ-MQ 282

Query: 320  ALKYVDKLIKGTTF----PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGR 375
            ALKY+   ++        P     EE     L  S   T    +   +  KC+  A   R
Sbjct: 283  ALKYIGNKVRRQRMWGGGPKKTKIEEARE--LLASTILTHVPVKEFNFRAKCIYTAVMVR 340

Query: 376  R--------KCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR- 426
            R        K D+RD + NKRLELAG+LL    +         M K   + +   R  + 
Sbjct: 341  RVILAQGDNKVDDRDYYGNKRLELAGQLLALLFEDLFKKFNSEMKKIADQVIPKQRAAQF 400

Query: 427  PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
             +  ++    +TNG+  A STG WS    + +R  G+   L R + +  L  + R   Q 
Sbjct: 401  DVVKHMRQDQITNGMVNAISTGNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQF 459

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSG 545
            + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + + PI +   N G
Sbjct: 460  EKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAGNLG 519

Query: 546  MEKL----ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
            +E +     ++ SY     F VF++G+ +GV +D    VS  R  RR   +   V I  +
Sbjct: 520  VEDVNLLCGEELSYP--NVFLVFLNGNILGVIRDHKKLVSTFRLMRRAGYINEFVSISTN 577

Query: 602  ELQSEVRIFMDAGRILRPLLVVENMG---KIKSLE--GKNY-TFQALLDHGIIELVGTEE 655
                 V I  D GR+ RP ++V+       +K +E   + Y  F+  L   ++E +   E
Sbjct: 578  LTDRCVYISSDGGRLCRPYIIVKKQKPAVTVKHMEELAQGYRNFEDFLHESLVEYLDVNE 637

Query: 656  EEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQK 715
            E DC  A     + KD         TH E++   LLG+  G+IP+ +H+ + R  YQ   
Sbjct: 638  ENDCNIALYEHTINKDT--------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-A 688

Query: 716  HSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQ 775
               QA+G    N   R+DTL + L YPQ+P+ +T   +           ++   +L  GQ
Sbjct: 689  MGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIE-----------LIDFEKLPAGQ 737

Query: 776  NAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF 835
            NA VAV  + GY+ ED+LV+N+ASL+RG  R    ++ K  +     Q   +    M++ 
Sbjct: 738  NATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLD- 796

Query: 836  GKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA----------------DHSI 879
               +  I R + LD DG    G  +++  +++ K   +                  D  I
Sbjct: 797  AATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPI 856

Query: 880  KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENF 939
              K      ++KV++SSN +      + LRQ R P +GDKFSS HGQKGV G +  QE+ 
Sbjct: 857  TYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDM 916

Query: 940  PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVD 999
            PF   GI PDI++NPH FPSR T G+L+E   GK       G+  G   Y T F    V 
Sbjct: 917  PFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKA------GVLDGKFHYGTAFGGSKVK 970

Query: 1000 AITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHP 1059
             + E L R G++  G + +  G TGE + + I+ GP +YQ+L HM  DK+  R  GP   
Sbjct: 971  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030

Query: 1060 LTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVI 1119
            LTRQP   R R GG++ GEMERDCLI +GA+  L ERL   SD++++ +C +C       
Sbjct: 1031 LTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQC------- 1083

Query: 1120 QRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
                  G      +C  C S   +    +PY  KLL QEL SM I
Sbjct: 1084 ------GLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNI 1122


>gi|125843259|ref|XP_690811.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 2
            [Danio rerio]
          Length = 1130

 Score =  481 bits (1238), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 375/1185 (31%), Positives = 557/1185 (47%), Gaps = 147/1185 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYASMRFG 89
            +F    GLV   I+S+N FI   ++K   +  E I     DP       W  +Y ++  G
Sbjct: 30   AFLKVKGLVKQHIDSFNYFINVEIKKIMKA-NEKITSDA-DPM------WYLKYLNIYVG 81

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
               +++ SF          + P   RL++MTYS+ + V +++              T   
Sbjct: 82   MPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEY--------------TRGS 121

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
            Q I +  L        IGR+P+M++S  C + G       +  +C  D GGYFI+KG EK
Sbjct: 122  QRIIRNALP-------IGRMPIMLRSSNCVLTGKTPMEFSKLNECPLDPGGYFIVKGQEK 174

Query: 204  VFVAQEQICLKRLWVSN----SMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            V + QEQ+   R+ V      ++G +V   +  K++R      +M     +K G   L  
Sbjct: 175  VILIQEQLSKNRIIVDQDRKGTVGASVTSSTHEKKSR-----TNMI----VKQGRFYLKH 225

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
              LS + PI I+F A+GV SD+EIV +I  T E    +   FA   +   K   F + + 
Sbjct: 226  NTLSEDAPIAIIFKAMGVESDQEIVQMIG-TEEH---VMAAFAPSLEECQKAQIFTQTQ- 280

Query: 320  ALKYVDKLIKGTTF---PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRR 376
            AL+Y+   ++       P     EE     L  S   T    +   +  KC+  A   RR
Sbjct: 281  ALRYIGNKVRRQRMWGGPKKTKMEEARE--LLASTILTHVPVKEFNFRAKCIYLAVMVRR 338

Query: 377  --------KCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR-P 427
                    K D+RD + NKRLELAG+LL    +         + K   + +   R  +  
Sbjct: 339  VILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSELKKIADQIIPKQRAAQFD 398

Query: 428  IEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQ 487
            +  ++    +TNG+  A STG WS    + +R  G+   L R + +  L  + R   Q +
Sbjct: 399  VVKHMRQDQITNGMVNAISTGNWSLKRFKMDR-QGVTQVLSRLSFISALGMMTRISSQFE 457

Query: 488  YTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGM 546
             T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + + PI +  FN G+
Sbjct: 458  KTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAFNLGV 517

Query: 547  EKL----ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
            E +     ++ SY     F VF++G+ +GV +D    V   R  RR   +   V I  + 
Sbjct: 518  EDVNLLCGEELSYPT--VFLVFLNGNILGVIRDHQKLVYTFRLMRRAGFINEFVSISTNL 575

Query: 603  LQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGIIELVGTEE 655
                V I  D GR+ RP ++V+N GK       I+ L     TF+  L   ++E +   E
Sbjct: 576  TDRCVYISSDGGRLCRPYIIVKN-GKPAVKNKHIEELSQGYRTFEDFLHESLVEYLDVNE 634

Query: 656  EEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQK 715
            E DC  A     + KD         TH E++   LLG+  G+IP+ +H+ + R  YQ   
Sbjct: 635  ENDCNIALYEHMISKDT--------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-A 685

Query: 716  HSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQ 775
               QA+G    N   R+DTL + L YPQRP+ +T   +           ++   +L  GQ
Sbjct: 686  MGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIE-----------LIDFEKLPAGQ 734

Query: 776  NAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF 835
            NA VAV  + GY+ ED+LV+N+ASL+RG  R    ++ K  +     Q   +    M++ 
Sbjct: 735  NATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLRRYTNQTFDKVMGPMLD- 793

Query: 836  GKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKY------------ADSGADH----SI 879
             + +  I R   LD DG    G  +++  +++ K             A  G        +
Sbjct: 794  AETRKPIWRHSILDADGICSPGEKVENKQVLVNKSMPTVTQTPLEGSAQPGQPQYREVPV 853

Query: 880  KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENF 939
              K      ++KV++SSN +      + LRQ R P +GDKFSS HGQKGV G +  QE+ 
Sbjct: 854  SYKGATDSYIEKVMISSNAEDAFLVKILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDM 913

Query: 940  PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVD 999
            PF   GI PDI++NPH +PSR T G+L+E   GK       G+  G   Y T F    V 
Sbjct: 914  PFCDSGICPDIIMNPHGYPSRMTVGKLIELLAGKA------GVLDGRFHYGTAFGGSKVK 967

Query: 1000 AITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHP 1059
             + E L R G++  G + +  G TGE + + I+ GP +YQ+L HM  DK+  R  GP   
Sbjct: 968  DVCEDLIRYGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1027

Query: 1060 LTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVI 1119
            LTRQP   R R GG++ GEMERDCLI +GA+  L ERL   SD++++ +C +C       
Sbjct: 1028 LTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQC------- 1080

Query: 1120 QRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
                  G      +C  C S   +    +PY  KLL QEL SM I
Sbjct: 1081 ------GLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNI 1119


>gi|294953589|ref|XP_002787839.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
            putative [Perkinsus marinus ATCC 50983]
 gi|239902863|gb|EER19635.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
            putative [Perkinsus marinus ATCC 50983]
          Length = 1159

 Score =  481 bits (1237), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 374/1211 (30%), Positives = 570/1211 (47%), Gaps = 162/1211 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+S+N F+   ++    +     +    DP+      W    + +  V
Sbjct: 38   AFLEARGLVKQHIDSFNYFVTTEIKDIVLAESNRRITSDVDPN------W---FLEYHDV 88

Query: 92   TLDKPSFFAGNGGDEH-DMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
             +  PS+    G  +H    P   R+++MTY+S + V +              +  GRE 
Sbjct: 89   RVGAPSY---RGVLQHVQTTPMMCRIRDMTYASDILVDI-------------SYVRGRE- 131

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKV 204
             ++K         + +GR+P+M++S LC +            +C  D GGYFIIKG EKV
Sbjct: 132  VVRK-------NGVCVGRLPIMLRSKLCRLHDATTEQMERMQECPHDPGGYFIIKGTEKV 184

Query: 205  FVAQEQICLKRLWVSNS----MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVY 260
             + QEQ+   R+ V       +   V   + + ++R +V       F+    G  V    
Sbjct: 185  LLMQEQLSNNRIIVEMDPKKLVQAVVTSSTADNKSRTVV------CFKSELSGLFVKHSA 238

Query: 261  FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNA 320
            F +  IP  I+  A+G+ SD+EIV ++    E C +  ++  S+ DA +    F + + A
Sbjct: 239  F-TELIPAVIMLRAMGMESDQEIVQMVG--TEKCHVDGMIL-SLQDA-HATGVFSQ-QQA 292

Query: 321  LKYVDKLIKGTTFPPGESTEECMNTYLFPSLHG--TKQ-----KARFLGYMVKCLLQAYS 373
            L+Y+   +K   +  G  +        F    G  TK      K RFL  M++  L A S
Sbjct: 293  LEYLGNKLKIRMYADGSFSSA------FDQDKGGATKPLDFSGKCRFLCLMMRRALDARS 346

Query: 374  GRRKCDNRDDFRNKRLELAGEL-----------LERELKVHIAHARKRMAKALQRDLYGD 422
                 D+RD + NKRLELAG+L           +  E+K  +     +  +       G 
Sbjct: 347  DSTLLDDRDYYGNKRLELAGQLIALLFEDLFKSMNTEIKKSVDMRLTKFFQQTSSARAGR 406

Query: 423  RTVRPIEYY------LDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTL 476
             TV     Y      +D+  +T G++RA S+G W+    R +R SG+   L R + +  L
Sbjct: 407  STVGLDSGYPDVLRDIDSERITRGMNRAISSGNWNIKRFRIDR-SGVSQVLSRFSFIAAL 465

Query: 477  VDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE- 535
              + R + Q + + K+   R   PS WG +C   TP+GE CGL+K L +   V+T   E 
Sbjct: 466  GAMTRVKSQFEKSRKLAGPRALQPSQWGMLCPSDTPEGEQCGLIKALSLLAHVTTPDEEG 525

Query: 536  PIFEQLFNSGMEKLADDASYSL--GGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELP 593
            PI    ++ G+E  A      L   G   VF++G  +GV +   +F+S++R  RRR ++ 
Sbjct: 526  PIRRLCYSLGVEDAAGLTGEELHSAGTITVFLNGALLGVHRRPQTFMSDMRTLRRRGKIG 585

Query: 594  TQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK--------IKSLEGKNYTFQALLDH 645
              V I   E Q  + I  D GR+ RPL+VV+  GK        ++ L      F   L  
Sbjct: 586  EFVSIYEHEAQRAIIIATDGGRLCRPLIVVKK-GKPMLKPEVHLRKLRSGELRFTDFLRL 644

Query: 646  GIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDH 705
            GIIE V   EE +        Y+  + ED   ++ TH E++   LLG   G++P+ +H+ 
Sbjct: 645  GIIEWVDVNEENN-------SYIAINPEDVT-MESTHLEIEPLTLLGAVAGLVPYPHHNQ 696

Query: 706  ARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHI 765
            + R  YQ      QA+G    N  +R DT    L YPQ+P+ ++   D +G         
Sbjct: 697  SPRNTYQC-AMGKQAMGNIACNQHLRTDTQLLLLTYPQQPMCKSRTIDLIGYD------- 748

Query: 766  LPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEV------DN 819
                 L  G NA VAV  + GY+ ED+L+MN+AS++RG  R    R Y   +       +
Sbjct: 749  ----NLPAGHNASVAVMSYSGYDIEDALIMNKASIDRGFGRCCVTRKYATPLARSAIGSS 804

Query: 820  KEMQ---VKRRSSDDMVNFGKIQSKIG------RVDSLDDDGFPFIGANLQSGDIVIGKY 870
            +E++   V            +    +       R   +D+DG PF G  +  G I+I K 
Sbjct: 805  EELRAPPVVGGGGKGGGRHQRQGGSVADKHCSCRYAIIDEDGLPFSGEQVVDGGILINKV 864

Query: 871  -----ADSGA-----DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKF 920
                 A +G      D  I  K+     V +V+ + N+D         RQ R P LGDKF
Sbjct: 865  SPMSDAATGQVSHWRDTPISYKNPVPSYVDRVIATENEDQAKIFKCITRQTRRPELGDKF 924

Query: 921  SSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGK 980
            SS HGQKGV+G + +QE+ PF  +G  PD+++NPH FPSR T G+LLE   GK       
Sbjct: 925  SSRHGQKGVVGLIVNQEDMPFGEKGWCPDLIMNPHGFPSRMTVGKLLECVSGKA------ 978

Query: 981  GICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQR 1040
            G+  G + Y T F   + + +T+ L R GF     E +  G TGE +   IF+GP +YQ+
Sbjct: 979  GVLDGERSYGTAFGGTTKEHMTQSLIRHGFHPSAKEYITSGVTGEALECYIFVGPIYYQK 1038

Query: 1041 LIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTL 1100
            L HM  DK+  R+TGPV+ LTRQP   R + GG++ GEMERDCL+A+GA+  L ERL   
Sbjct: 1039 LKHMVMDKIHARSTGPVNQLTRQPTEGRAKDGGLRLGEMERDCLVAYGASNLLLERLMLS 1098

Query: 1101 SDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELF 1160
            SD +   +CR+C            G    +   C++C + ++IV   +PY  KLL QEL 
Sbjct: 1099 SDVFTASVCRRC------------GLLSYQNGTCKLCGTSENIVDIRMPYACKLLFQELQ 1146

Query: 1161 SMGITLKFDTE 1171
            +M +  +   E
Sbjct: 1147 AMNVCPRLKVE 1157


>gi|296212778|ref|XP_002752985.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Callithrix
            jacchus]
          Length = 1133

 Score =  481 bits (1237), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 367/1185 (30%), Positives = 554/1185 (46%), Gaps = 146/1185 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYASMRFG 89
            +F    GLV   I+S+N FI   ++K        I++     +   +  W  +Y ++  G
Sbjct: 32   AFLKVKGLVKQHIDSFNYFINVEIKK--------IMKANEKVTSDADPMWYLKYLNIYVG 83

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
               +++ SF          + P   RL++MTYS+ + V +++              T   
Sbjct: 84   LPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEY--------------TRGS 123

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
            Q I +  L        IGR+P+M++S  C + G       +  +C  D GGYFI+KG EK
Sbjct: 124  QRIIRNALP-------IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEK 176

Query: 204  VFVAQEQICLKRLWVS----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            V + QEQ+   R+ V      ++G +V   +  K++R      +M+    +K G   L  
Sbjct: 177  VILIQEQLSKNRIIVEADRKGAVGASVPSSTHEKKSR-----TNMA----VKQGRFYLRH 227

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
              LS +IPI I+F A+GV SD+EIV +I     +  ++     S+ +   K   F +   
Sbjct: 228  NTLSEDIPIVIIFKAMGVESDQEIVQMIG---TEEHVMAAFGPSLEEC-QKAQIFTQ-MQ 282

Query: 320  ALKYVDKLIKGTTF----PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGR 375
            ALKY+   ++        P     EE     L  S   T    +   +  KC+  A   R
Sbjct: 283  ALKYIGNKVRRQRMWGGGPKKTKIEEARE--LLASTILTHVPVKEFNFRAKCIYTAVMVR 340

Query: 376  R--------KCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR- 426
            R        K D+RD + NKRLELAG+LL    +         M K   + +   R  + 
Sbjct: 341  RVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQF 400

Query: 427  PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
             +  ++    +TNG+  A STG WS    + +R  G+   L R + +  L  + R   Q 
Sbjct: 401  DVVKHMRQDQITNGMVNAISTGNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQF 459

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSG 545
            + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + + PI +   N G
Sbjct: 460  EKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLG 519

Query: 546  MEKL----ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
            +E +     ++ SY     F VF++G+ +GV +D    V+  R  RR   +   V I  +
Sbjct: 520  VEDVNLLCGEELSYP--NVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTN 577

Query: 602  ELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHGIIELVGTEE 655
                 V I  D GR+ RP ++V+          ++ L      F+  L   ++E +   E
Sbjct: 578  LTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNE 637

Query: 656  EEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQK 715
            E DC  A     + KD         TH E++   LLG+  G+IP+ +H+ + R  YQ   
Sbjct: 638  ENDCNIALYEHTINKDT--------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-A 688

Query: 716  HSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQ 775
               QA+G    N   R+DTL + L YPQ+P+ +T   +           ++   +L  GQ
Sbjct: 689  MGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIE-----------LIEFEKLPAGQ 737

Query: 776  NAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF 835
            NA VAV  + GY+ ED+LV+N+ASL+RG  R    ++ K  +     Q   +    M++ 
Sbjct: 738  NATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLD- 796

Query: 836  GKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA----------------DHSI 879
               +  I R + LD DG    G  +++  +++ K   +                  D  I
Sbjct: 797  AATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPI 856

Query: 880  KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENF 939
              K      ++KV++SSN +      + LRQ R P +GDKFSS HGQKGV G +  QE+ 
Sbjct: 857  TYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDM 916

Query: 940  PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVD 999
            PF   GI PDI++NPH FPSR T G+L+E   GK       G+  G   Y T F    V 
Sbjct: 917  PFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKA------GVLDGRFHYGTAFGGSRVK 970

Query: 1000 AITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHP 1059
             + E L R G++  G + +  G TGE + + I+ GP +YQ+L HM  DK+  R  GP   
Sbjct: 971  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030

Query: 1060 LTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVI 1119
            LTRQP   R R GG++ GEMERDCLI +GA+  L ERL   SD++++ +C KC       
Sbjct: 1031 LTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGKC------- 1083

Query: 1120 QRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
                  G      +C  C S   +    +PY  KLL QEL SM I
Sbjct: 1084 ------GLLGYSGWCHFCKSSRQVSSLRIPYACKLLFQELQSMNI 1122


>gi|145521170|ref|XP_001446440.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124413918|emb|CAK79043.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1131

 Score =  481 bits (1237), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 369/1211 (30%), Positives = 584/1211 (48%), Gaps = 170/1211 (14%)

Query: 28   KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMR 87
            K   S+ +  GL    I+S+N FI+  L        E IV+   +     E +  +  + 
Sbjct: 7    KLITSYLSFRGLQKQHIDSFNYFIEQRL--------EQIVKSPLNQRITCESDSSFL-LE 57

Query: 88   FGQVTLDKPSFFAGNGGDEHDM----FPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDK 143
            +  + ++ P+F +    D++ +    +P   RL + TY+  + V V+  +          
Sbjct: 58   YLSIRVENPTFTSS--WDKYSLKSLLYPHECRLNDQTYAGDIYVNVRIHM---------- 105

Query: 144  FKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFI 197
               GRE   +K+VL        IGR+P+M+ S  C + G       + G+C +D  GYFI
Sbjct: 106  --KGREPIEEKDVL--------IGRMPIMLGSKKCNLSGKTEAEIFQYGECPYDPKGYFI 155

Query: 198  IKGAEKVFVAQEQICLKRL----------WVSNSMGWTVAYKSEN----KRNRLIVRLVD 243
            I+G EKV +  EQ+   R+          +VS    + +  KS+     K+N+  V+   
Sbjct: 156  IEGNEKVILILEQVVDNRIIVDVDNKTDQYVSTVQSYQLETKSKASIILKKNKFYVK--- 212

Query: 244  MSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFAS 303
             S F+D                 P++I+F ALG+ +DKEI+ LI     + SI+  L  S
Sbjct: 213  SSSFKDA----------------PLFIVFKALGIVNDKEIIELIG---TEPSIVEKLLMS 253

Query: 304  IHDADNKCDEFRKGRNALKYVDKLIK----GTTFPPGESTEECMNTYLFPSLHGTK---- 355
              D+ +  ++ +   +AL+Y+ KLI     G +    +   E +       ++  K    
Sbjct: 254  FQDSSD--EKIKTQLDALQYIGKLITSKFGGQSSNLADQAREKLAQVFLAHVNCKKYDFY 311

Query: 356  QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKAL 415
             KA +LG MV+ L+ A   +R  D++D + NKR+  AG LLE   +         ++  L
Sbjct: 312  PKAIYLGQMVRRLILAMEDKRFVDDKDYYGNKRMRCAGNLLELLFEDLFKGLNSTISSIL 371

Query: 416  QRDL--------YGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANL 467
            +++L          D T++  E+ +D   +T GL+RA  TG W+      +R  G+   L
Sbjct: 372  KKELGKANCKFTPKDVTMKMKEFGVD---ITKGLNRAIKTGKWTIQRFHMDR-QGVTQLL 427

Query: 468  GRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-T 526
             R +    L  L + R QVQ T KV   R    S +G IC   TPDGE+CGLVK L + T
Sbjct: 428  ARISYTSALGMLTKMRSQVQKTLKVSGPRALVGSQFGMICPADTPDGEDCGLVKTLALLT 487

Query: 527  GLVSTSILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRK 586
             +    I + +++ + + G+E +           + V+++G  +G+      FV +LR  
Sbjct: 488  HITQEDIQDSVYKIILSMGVEDICHFKPSEFHKNYIVYLNGIIVGMHARPQEFVDQLRIL 547

Query: 587  RRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKSLEGKNY 637
            RRR ++   V I +D+L+  V I  D+GR++RPL++V++         M   K  + K  
Sbjct: 548  RRRGKINEFVSIHKDDLRKVVNISGDSGRLVRPLILVKDGKPQLIQIDMIDFKQNDAKT- 606

Query: 638  TFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGI 697
             F + + +G IE +   E ++   A  I        +   ++ TH E+D   +L    G+
Sbjct: 607  VFSSFVKNGKIEYLDVNESDNAFIALTI--------NDVTMETTHLEIDQMTILSCVTGL 658

Query: 698  IPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGK 757
            +PF +H+ + R  +Q Q    Q++G    N  IR DT  +QL YPQ PL RT+  + + +
Sbjct: 659  VPFPHHNQSARNTFQCQ-MGKQSLGIIGMNTQIRCDTQLYQLIYPQTPLVRTVSMEAVNQ 717

Query: 758  PGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEV 817
                  H LP      G NA VAV  +  Y+ ED+L+MN++SL+RG  R+   +    E 
Sbjct: 718  ------HRLPA-----GHNAQVAVMSYSCYDIEDALIMNKSSLDRGFGRTAVYKKSVTEC 766

Query: 818  D----NKEMQVKRRSSDDMVNFGKIQSK-IGRVDSLDDDGFPFIGANLQSGDIVIGK--- 869
            +    NKE +   R  +        + K I +  +LD+DG   +GA L  GDI + K   
Sbjct: 767  EINQRNKESRFNERIDEPPTKTHNTKKKFIKKYHALDNDGITKVGAQLHHGDIYVNKKTP 826

Query: 870  -YADSGADHSIKLKHTERGMVQK---------VVLSSNDDGKNFSVVS--LRQVRSPCLG 917
               D+    +I++  T     +K         ++ ++ND  +    +    RQ+R P  G
Sbjct: 827  QVPDNPQTENIQIADTPSVFKEKWPYTVDRVLIINNTNDGTEKIKTIKTIFRQIRRPEFG 886

Query: 918  DKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAA 977
            DKFSS HGQKGV+G + +QE+ PF  +G  PD+++NPH +PSR T  +L+E   GK  A 
Sbjct: 887  DKFSSRHGQKGVVGLIVNQEDMPFNERGWCPDLIMNPHGYPSRMTIAKLMELLCGKLGAL 946

Query: 978  LGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTF 1037
             GK       +Y T F   +V  + E+L + GF   G + L  G TGE +   ++ GP F
Sbjct: 947  EGKF------KYGTAFGGENVLQVGEELLKRGFHYQGKDCLISGITGEYMECYVYQGPIF 1000

Query: 1038 YQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERL 1097
            YQRL HM  DK+  R  GP+  LTRQPV  R + GG + GEMERDC +A+GA+  L ERL
Sbjct: 1001 YQRLKHMVIDKIHARAKGPMEKLTRQPVEGRAKDGGQRIGEMERDCFLAYGASNLLIERL 1060

Query: 1098 FTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQ 1157
               SD + +++C  C             G       CR C++ D + +  +PY  KLL Q
Sbjct: 1061 LISSDPFNVYVCEIC-------------GMFKSDSVCRGCNT-DKVYQIRLPYCCKLLFQ 1106

Query: 1158 ELFSMGITLKF 1168
            EL +M I  K 
Sbjct: 1107 ELLAMNIKPKL 1117


>gi|393219485|gb|EJD04972.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Fomitiporia mediterranea MF3/22]
          Length = 1148

 Score =  481 bits (1237), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 366/1193 (30%), Positives = 554/1193 (46%), Gaps = 150/1193 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETI--VEPGYDPSKKGEGEWRYASMRFG 89
            +F    GLV   ++S+N F+   ++    +  +    V+P +         W    +++ 
Sbjct: 44   AFLKVKGLVKQHLDSFNYFVDVDIKNIVKANNKVTSDVDPRF---------W----LKYT 90

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
             + +  P     +  D   + P   RL++ TYS+ + V +Q   YT+          G++
Sbjct: 91   DIQVGFPDRTDVDAVDR-SVTPHECRLRDTTYSAPILVTIQ---YTR----------GKQ 136

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG------DCDFDHGGYFIIKGAEK 203
              ++K        N+ IGR+P+M++S+ C + G  +       +C  D GGYF++KG EK
Sbjct: 137  VVLRK--------NVNIGRLPIMLRSNKCVLTGRTEAQLARMTECPLDPGGYFVVKGTEK 188

Query: 204  VFVAQEQICLKRLWVSNS--MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYF 261
            V + QEQ+   R+ V +    G   A  + +    L  +    +K E +      L    
Sbjct: 189  VILVQEQLSKNRIIVEHDPVKGVVQASCTSSTHGGLKSKTYVATKKERL-----YLRHNC 243

Query: 262  LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNAL 321
               +IPI I   AL + SDKEI+ L   T  +       F+   +   K   F K   AL
Sbjct: 244  FHEDIPIVIALKALSIQSDKEILLL---TAGNTEAYKSTFSPNLEEAAKIGVFTK-HQAL 299

Query: 322  KYVDKLIK------GTTFPPGESTEECMNTYLFPSLHGT----KQKARFLGYMVKCLLQA 371
            +Y+   +K      G   P  E   E + T +   +       + KA F+  M + +L  
Sbjct: 300  EYIGSRVKVNRRVIGPRRPAWEEAMEALATIVLAHVPVNNLDFRPKAIFIATMTRRVLMC 359

Query: 372  YSGRRKCDNRDDFRNKRLELAGELL-----------ERELKVHIAHARKRMAKALQRDLY 420
             +  +  D+RD   NKRLELAG+LL              LK  I    K+ ++  + D +
Sbjct: 360  LADEKMVDDRDYVGNKRLELAGQLLALLFEDLFKTFNTNLKSAIDKVLKKPSRTSEFDAF 419

Query: 421  GDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLR 480
                   +++  D   +T G  RA STG WS    + ER +G+   L R + +  L  + 
Sbjct: 420  NT-----MQFQGDH--ITAGFVRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALGMMT 471

Query: 481  RTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFE 539
            R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + E P+  
Sbjct: 472  RISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVEEEPLIR 531

Query: 540  QLFNSGMEK--LADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVE 597
             +   G+E   LA  A       F V V+G  IG+ +    FV   RR RR       V 
Sbjct: 532  LVHALGVEDICLATGAEIYGQNSFVVHVNGAIIGITRYPSRFVQNFRRLRRAGRFSEFVS 591

Query: 598  IKRDELQSEVRIFMDAGRILRPLLVVENM------GKIKSLEGKNYTFQALLDHGIIELV 651
            I  +     V I  D GRI RP+++VEN         I  L+ +  TF   L  G++E +
Sbjct: 592  IYINHHHKAVYIASDGGRICRPMIIVENSRPKVTSQHIIDLKKQLLTFDDFLRRGLVEYL 651

Query: 652  GTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLY 711
               EE D   A          ED      TH E++   +LG   G+IP+ +H+ + R  Y
Sbjct: 652  DVNEENDSYIAL--------YEDMIVPTTTHLEIEPFTILGAVAGLIPYPHHNQSPRNTY 703

Query: 712  QSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPEL 771
            Q      QAIG    N   R+DTL + + YPQ+P+ +T   + +G             +L
Sbjct: 704  QC-AMGKQAIGAIAYNQLNRIDTLLYLMVYPQQPMVKTKSIELVG-----------YDKL 751

Query: 772  YNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDD 831
              GQNA VAV  + GY+ ED+L++N+ASL+RG  R + +R     +         R +D 
Sbjct: 752  PAGQNATVAVMSYSGYDIEDALILNKASLDRGYGRCQVMRKNATLIRKYPNGTYDRLADA 811

Query: 832  MVN-FGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHS--------IKLK 882
             ++  G++Q K    D +  DG   +G  +  GD+ + K   S A+ +        +  K
Sbjct: 812  PLDENGRVQKK---YDIIQSDGLAGVGERVDPGDVYVNKQTPSNANDNTFTGQAAGVAYK 868

Query: 883  HTER-------GMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLES 935
            +T         G + KV+L+  ++ +    V +RQ R P LGDKFSS HGQKGV G + +
Sbjct: 869  NTPMTYKSPVPGNIDKVMLTDTENDQTLVKVLIRQTRRPELGDKFSSRHGQKGVCGLIVN 928

Query: 936  QENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFAT 995
            QE+ PF   GI PD ++NPH FPSR T G+++E   GK       G+  G  +Y T F  
Sbjct: 929  QEDMPFNDDGISPDSIMNPHGFPSRMTVGKMIELLAGKA------GVLDGKLQYGTAFGG 982

Query: 996  PSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTG 1055
              V+ +++ L   GF+  G + L  G TGE + + ++ GP +YQ+L HM  DK+  R  G
Sbjct: 983  SKVEDMSKILIERGFNYAGKDMLTSGITGEQMEAYVYFGPIYYQKLKHMVMDKMHARARG 1042

Query: 1056 PVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNV 1115
            P   LTRQP   R R GG++ GEMERDCLI +GA   L ERL   SD +++H C  C   
Sbjct: 1043 PRATLTRQPTEGRSREGGLRLGEMERDCLIGYGATQLLLERLMLSSDKFEVHACEMC--- 1099

Query: 1116 ANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
                      G      +C  C S   + K  +PY AKLL QEL +M +  + 
Sbjct: 1100 ----------GLMGYNGWCPYCKSSKGMAKLVIPYAAKLLFQELMAMNVVPRL 1142


>gi|55273999|gb|AAV48870.1| RNA polymerase II second largest subunit [Climacodon septentrionalis]
          Length = 886

 Score =  481 bits (1237), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 306/871 (35%), Positives = 459/871 (52%), Gaps = 94/871 (10%)

Query: 258  SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG 317
            ++ ++  +IPIW++F ALGV SD++I+  I +  +D  +L +L   I D     D     
Sbjct: 50   TIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDR---- 105

Query: 318  RNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSLH----GTKQKARFLGYMVKCL 368
              AL ++    +GTT            +E +   + P +        +KA F GY +  L
Sbjct: 106  EIALDFIGN--RGTTTGLNRERRLRYAQEILQKEMLPHISMAEGSESKKAYFFGYRIHRL 163

Query: 369  LQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPI 428
            L A   RR  D+RD F  KRL+LAG LL    ++      K + + LQ+ +   +    +
Sbjct: 164  LLAALERRDLDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFN-L 222

Query: 429  EYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQY 488
               +  + +TNGL  + +TG W    K     +G+   L R     TL  LRR    +  
Sbjct: 223  SLAVKHNTITNGLKYSLATGNWGDQKKMMSAKAGVSQVLNRYTYASTLSHLRRCNTPLGR 282

Query: 489  TGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGME 547
             GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  S+  P+ E L   G+E
Sbjct: 283  EGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLE 342

Query: 548  KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEV 607
             L ++A +S     KVFV+G W+GV +D  + V  +++ RR+ ++  +V + RD  + E+
Sbjct: 343  SLEENA-HSATPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREREL 401

Query: 608  RIFMDAGRILRPLLVVENM------GKIKSLEGKN--YTFQALLDHGIIELVGTEEEED- 658
            R++ DAGR+ RPL +VEN         I  L  K   Y +  L+  G+IEL+  EEEE  
Sbjct: 402  RLYTDAGRVCRPLFIVENQQLTITKKHISQLSDKESGYKWDDLIKGGVIELLDAEEEETV 461

Query: 659  --CCTAW-------GIKYLLKDIED----------KKPIKFTHCELDMSFLLGLSCGIIP 699
              C T         GI  L +D  D          +   KFTHCE+  S +LG+   IIP
Sbjct: 462  MICMTPEDLELARNGIDPLQQDAADIDMSVRLKTAQTAHKFTHCEIHPSMILGVCASIIP 521

Query: 700  FANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPG 759
            F +H+ + R  YQS     QA+G   TN  +R+DT+++ L+YPQ+PL  T   +      
Sbjct: 522  FPDHNQSPRNTYQS-AMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSME------ 574

Query: 760  YGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDN 819
                  L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS + RSY      
Sbjct: 575  -----YLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSY------ 623

Query: 820  KEMQVKRRSS-DDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA- 871
              M ++++S    +  FGK      ++ K G  D ++DDG    G  +   DI+IGK A 
Sbjct: 624  --MDLEKKSGVQQLEEFGKPTRETTLRMKHGTYDKIEDDGLIAPGTGVNGEDIIIGKTAP 681

Query: 872  --------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLG 917
                           +  D S  LK TE G++ +V++++N +G+ F  + +R  R P +G
Sbjct: 682  IPPDSEKLGQRTRQHTRRDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRIPQIG 741

Query: 918  DKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAA 977
            DKF+S HGQKG +G    QE+ PFT +GI PDI+INPHA PSR T G L+E  L K    
Sbjct: 742  DKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATL 801

Query: 978  LGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTF 1037
            +G       +  ATPF   +V+++++ L + G+   G E +Y G TG  +++ +++GPT+
Sbjct: 802  IGN------EGDATPFTDLTVESVSQFLRKEGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 855

Query: 1038 YQRLIHMSEDKVKFRNTGPVHPLTRQPVADR 1068
            YQRL HM +DK+  R  GPV  LTRQPV  R
Sbjct: 856  YQRLKHMVDDKIHSRARGPVQILTRQPVEGR 886


>gi|332017159|gb|EGI57958.1| DNA-directed RNA polymerase III subunit RPC2 [Acromyrmex echinatior]
          Length = 1113

 Score =  480 bits (1236), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 359/1198 (29%), Positives = 575/1198 (47%), Gaps = 141/1198 (11%)

Query: 28   KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMR 87
            K   +F    GLV+  I+SYN FI   ++    +  +  V+   DP        +Y +++
Sbjct: 4    KLVAAFLRNKGLVNQHIDSYNYFINEEIKNIVKANEK--VQSDEDP----HFYLKYLNIK 57

Query: 88   FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
             G   + + S    N        P   RL+++ YS+ + V V++ + + +R+        
Sbjct: 58   VGLPEVQESS----NSIRTIPTTPHECRLRDLNYSASIIVDVEY-IRSNQRIIRH----- 107

Query: 148  REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGA 201
                           N++IG++P+M++S  C +         +  +C +D GGYFII G 
Sbjct: 108  ---------------NMVIGKMPIMLRSSNCVLTKKSESELAKMNECLYDSGGYFIINGQ 152

Query: 202  EKVFVAQEQICLKRLWVS-NSMGWTVA----YKSENKRNRLIVRLVDMSKFEDIKGGEKV 256
            EKV + QEQ+   R+ +  +S    VA    +  + K    +V           K G+  
Sbjct: 153  EKVILIQEQMVRNRIILEEDSKNCIVAACNSFTHDKKTKTNVVG----------KTGKYY 202

Query: 257  LSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFR- 315
            +       +I I I+F A+G+ SD EI+ ++  T E  + LN   AS+ D    C E   
Sbjct: 203  IRHNMFQDDILITIIFKAMGIVSDLEIMQMVG-TQE--TYLNKFAASLED----CQELGI 255

Query: 316  -KGRNALKYVDKLIKGTTF--PPGESTEECMNTYLFPSLHGT-------KQKARFLGYMV 365
                 ALKY++   K   F  P    T+E  +      L          + KA +L  M+
Sbjct: 256  FSQNQALKYLNNKRKQMRFHVPKSHVTDEMKDVLATNILSHVPVVDFNFRPKALYLALMI 315

Query: 366  KCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTV 425
            + ++ A S     D++D + NKRLELAG LL    +         + K   +++   +  
Sbjct: 316  RRVINAQSDHSLIDDKDYYGNKRLELAGSLLALMFEDLFKRFNWELKKIANKNIPKTKAA 375

Query: 426  R-PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQ 484
               I  ++   ++TNGL  A S+G W+    R ER  G+   L R + +  L  + R   
Sbjct: 376  AFDIVNHMRHDLITNGLVFAISSGNWTIKRFRMER-HGVTQVLSRLSYISALGMMTRVHS 434

Query: 485  QVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQL-FN 543
            Q + T KV   R    S WG +C   TP+GE CGLVKNL +   ++T + E +  +L  N
Sbjct: 435  QFEKTRKVSGPRSLQGSQWGMLCPNDTPEGEACGLVKNLALMAHITTEVPEELIIKLVLN 494

Query: 544  SGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
             G+E +   A   L  +  + VFV+G  +G+ ++    V + R  RRR  + + V I   
Sbjct: 495  LGVENIYTLAGEELTSEDIYSVFVNGIMVGIVQNHKRLVRQFRLLRRRGYINSFVSIYTQ 554

Query: 602  ELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHGIIELVGTEE 655
                 ++I  D GR+ RPL++V+N         I++LE    +F+  L  G+IE +   E
Sbjct: 555  HRHKCIQISSDGGRLCRPLIIVKNAKSLVKPKHIENLERNITSFEDFLYDGLIEYLDVNE 614

Query: 656  EEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQK 715
            E D   A          E +     TH E+    +LG+  G+IP+ +H+ + R  YQ   
Sbjct: 615  ENDSLIAC--------TESEINENTTHLEIAEFTILGVCAGLIPYPHHNQSPRNTYQCAM 666

Query: 716  HSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQ 775
               QA+G    N   R+DT+ + L YPQ P+ +T   +           ++   +L  G+
Sbjct: 667  -GKQAMGIIGYNQRNRIDTVMYNLVYPQTPIVKTRAIE-----------LINYDKLPAGE 714

Query: 776  NAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF 835
            NAIVAV  + GY+ ED+L+ N+AS++RG  R    R+ K  +     + +      M++ 
Sbjct: 715  NAIVAVMSYSGYDIEDALIFNKASIDRGYGRCLVYRNAKCILKKYANRTQDTIMGPMLD- 773

Query: 836  GKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH------------SIKLKH 883
            G  +  I + + LD DG    G  +++  +++ K   + +++            +++ ++
Sbjct: 774  GNTKKPITKHEVLDVDGIVLPGEMVENKTVMVNKSVPTPSENIGPVSSGTIQTQAVEYRN 833

Query: 884  TE---RGMV----QKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ 936
             E   +GMV    +KV+++SN D    + + LRQ R P +GDKFSS HGQKGV+G +  Q
Sbjct: 834  AEIPFKGMVPAYVEKVIVTSNADDCFLTKLLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQ 893

Query: 937  ENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP 996
            E+ PF   GI PDI++NPH FPSR T G+L+E   GK       G+ +G    AT F   
Sbjct: 894  EDMPFNDHGICPDIIMNPHGFPSRMTVGKLIELLAGKA------GVVNGKFHDATAFGGA 947

Query: 997  SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGP 1056
             V+ I E+L + G++  G +  Y+G TG+ +   I+ GP +YQ+L HM +DK+  R  GP
Sbjct: 948  KVEDIREELAKNGYNYLGKDFFYNGMTGKPLIGYIYSGPVYYQKLKHMVQDKMHARARGP 1007

Query: 1057 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVA 1116
               LTRQP   R R GG++ GEMERDCLI +GA+  L ERL   SD++++ +C KC    
Sbjct: 1008 RVVLTRQPTEGRSREGGLRLGEMERDCLIGYGASMLLVERLMISSDAFKVDVCNKC---- 1063

Query: 1117 NVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFD-TEFC 1173
                     G      +C+ C S   +    +PY  KLL QEL SM +  +    ++C
Sbjct: 1064 ---------GLIGYNGWCQRCKSSSSVSTITMPYACKLLFQELQSMNVVPRLSLKDYC 1112


>gi|289596766|ref|YP_003483462.1| DNA-directed RNA polymerase subunit B [Aciduliprofundum boonei T469]
 gi|289534553|gb|ADD08900.1| DNA-directed RNA polymerase subunit B [Aciduliprofundum boonei T469]
          Length = 1201

 Score =  480 bits (1236), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 384/1262 (30%), Positives = 595/1262 (47%), Gaps = 195/1262 (15%)

Query: 31   VSFFNEYGLVSHQINSYNEFIKNG------LQKAFDSFGETIVEP----GYDPSKKGEGE 80
            V    +  +V+H I SYN+ I         +Q+  D+   T  +P      D +K G   
Sbjct: 5    VDILFKKSVVNHHIASYNDLIPTPDNPNSVMQEIVDTTKVTDEDPPGVITLDRTKTGGKT 64

Query: 81   WR--------YASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQ 132
             +        Y  +    + + +P      G     + P  ARL++++Y + + +K++  
Sbjct: 65   IKIVFGRNNDYWDVNEPTIRIGRPEIKEATGATVQ-ITPMEARLRDLSYLAPLYLKIKVL 123

Query: 133  VYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLC---------WMKGV 183
                     D     RE  + K           IG  PVMVKS +C         ++  +
Sbjct: 124  E------CDDAGCYEREPEMVK-----------IGDFPVMVKSKICTLHEDNIDDYLDSI 166

Query: 184  EK----------------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVA 227
             K                G+   D GGYFII G+E+V V+ E +   R+ V  +  +   
Sbjct: 167  SKDKDILNWPYKQKLEYVGEDPDDPGGYFIIGGSERVLVSLEDLAPNRVLVEKNERYNTV 226

Query: 228  YKSEN--KRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVN 285
             ++     + R    L  M K  D   G  V+SV  ++  IP+ IL  ALG+  D++I  
Sbjct: 227  VETAKVFSQRRGYRALTIMEKKSD---GIIVVSVPAVAGTIPLVILMKALGLEKDQDIYR 283

Query: 286  LIDFTCEDCSILNILFASIHDADN----KCDEFRKGRNALKYVDKLIKGTTFPPGESTE- 340
             I     D  +  I  A+I + +N      +  R  R+A++Y++K      F  G++ E 
Sbjct: 284  AI---VSDEKMSVIALANIEEVENDKLYPPNGIRTQRDAIEYLEK-----RFAAGQAKEY 335

Query: 341  ------ECMNTYLFPSLHGTKQ----KARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLE 390
                  + +++ L P L  +K+    KA +LG M + +L+ + G RK D++D   NKRL+
Sbjct: 336  REKKISQILDSSLLPHLGTSKEDRIKKAYYLGRMARRVLELHLGLRKEDDKDHLANKRLK 395

Query: 391  LAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAW 450
            L+G+LLE   ++      K +   L+R     + +R I   +   +LT  +  A STG W
Sbjct: 396  LSGDLLEELFRMAFEALMKDLKYQLERTYNRKKGIR-IRVSIRQDVLTQKIMHAMSTGNW 454

Query: 451  SHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLS 510
                 RT    G+   L R + + TL  LRR    +  +    +AR  HP+ WG++C   
Sbjct: 455  VG--GRT----GVSQLLDRTSHMSTLSHLRRVISPLTRSQPHFEARDLHPTQWGRLCPNE 508

Query: 511  TPDGENCGLVKNLGVTGLVSTSILEP-IFEQLFNSGMEKLADDASYSLGGKFKVFVDGDW 569
            TP+G+NCGLVKN  +   VS    E  + + L   G+E    +  Y  G   +V+++G+ 
Sbjct: 509  TPEGQNCGLVKNAALIIDVSEGYPEEDVLKILKGLGVE----ERQYETGELARVYLNGNL 564

Query: 570  IGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKI 629
            +G  KD L+  +E+R KRR+  +  Q+ I+ D+  +EV I  D GRI RPLLVVEN G +
Sbjct: 565  VGYHKDGLALTNEIRSKRRKGLISHQINIRYDDTTNEVMINSDKGRIRRPLLVVEN-GNV 623

Query: 630  KS-------LEGKNYTFQALLDHGIIELVGTEEEEDCCTA-------------------- 662
            K        L       + L+  G++E +  EEEE+   A                    
Sbjct: 624  KYTSRHRELLRRGKMEIEDLVREGVVEWIDAEEEENAYIAVYAYDVPERCPHCGRVLGRN 683

Query: 663  ---W-----GIKYLLK--------DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHA 706
               W     G K  L+         +E K   + TH E+D   +LG   G +P+ +H+ +
Sbjct: 684  DVEWMNPGEGEKVTLRCKHCGAEFGVEKKITKEHTHLEIDPLLILGAVAGCVPYPHHNSS 743

Query: 707  RRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHIL 766
             R+   +     Q++G P  N   R DT  H L YPQ P+ RT   D +        + +
Sbjct: 744  PRITMGAAM-LKQSLGLPAANYRRRPDTRGHLLHYPQAPIVRTKTMDFV--------NFM 794

Query: 767  PRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAE----VDNKEM 822
             RP    GQNA+VA+  + GYN +D++VMN+AS+ERG  RS   R+YK+E       +E 
Sbjct: 795  RRPA---GQNAVVAIISYHGYNIQDAIVMNKASVERGFGRSTFFRTYKSEERRYPGGQED 851

Query: 823  QVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA----------- 871
            + +  S D      + + K+     LD+DG       ++ GD++IGK +           
Sbjct: 852  KFEIPSPDVRGAMTEDRYKL-----LDEDGLISPEVYVKGGDVLIGKTSPPRFLEEESEL 906

Query: 872  ---DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKG 928
                   + S+ ++  E G V  V+L+ +++      V +R  R P LGDKF+S HGQKG
Sbjct: 907  LGPQKRRESSVTMRPEEEGWVDSVLLTVSENNSRLVKVKVRDQRIPELGDKFASRHGQKG 966

Query: 929  VLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKR 988
            V+G +  QE+ PFT  GI+PD++INPHA PSR T G +LE   GK + +L      G   
Sbjct: 967  VVGAIIPQEDMPFTESGIIPDLIINPHAIPSRMTVGHILEMIGGK-VGSLEGRFVDG--- 1022

Query: 989  YATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDK 1048
              T F+     A+ E L + GF   G E +YDG TG  + + IF+G  +YQ+L HM   K
Sbjct: 1023 --TVFSGEPEKALREALVKNGFKYNGKEIMYDGITGRKIEAEIFVGVIYYQKLHHMVAGK 1080

Query: 1049 VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHI 1108
               R+ GPV  LTRQP   R R GG++FGEMERD LI HGAA  + +RL   SD   +++
Sbjct: 1081 FHARSRGPVQILTRQPTEGRSRLGGLRFGEMERDTLIGHGAAMVIKDRLLDNSDGTVLYV 1140

Query: 1109 C--RKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITL 1166
            C   +C ++A +  R  G  R      C +C +  +I      Y  KL+  EL S+G+ +
Sbjct: 1141 CGNPECGHIA-MFDRKRGILR------CPVCGNTTNIYPIETSYAFKLMHDELASLGVIM 1193

Query: 1167 KF 1168
            + 
Sbjct: 1194 RM 1195


>gi|24429617|gb|AAM18214.1| RNA polymerase III subunit RPC2 [Homo sapiens]
          Length = 1133

 Score =  480 bits (1236), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 367/1187 (30%), Positives = 555/1187 (46%), Gaps = 150/1187 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYASMRFG 89
            +F    GLV   I+S+N FI   ++K        I++     +   +  W  +Y ++  G
Sbjct: 32   AFLKVKGLVKQHIDSFNYFINVEIKK--------IMKANEKVTSDADPMWYLKYLNIYVG 83

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
               +++ SF          + P   RL++MTYS+ + V +++              T   
Sbjct: 84   LPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEY--------------TRGS 123

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
            Q I +  L        IGR+P+M++S  C + G       +  +C  D GGYFI+KG EK
Sbjct: 124  QRIIRNALP-------IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEK 176

Query: 204  VFVAQEQICLKRLWVS----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            V + QEQ+   R+ V      ++G +V   +  K++R      +M+    +K G   L  
Sbjct: 177  VILIQEQLSKNRIIVEADRKGAVGASVTSSTHEKKSR-----TNMA----VKQGRFYLRH 227

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFR--KG 317
              LS +IPI I+F A+GV SD+EIV +I  T E       + A+   +  +C + +    
Sbjct: 228  NTLSEDIPIVIIFKAMGVESDQEIVQMIG-TAEH------VMAAFGPSLEECQKAQIFTQ 280

Query: 318  RNALKYVDKLIKGTTF----PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYS 373
              ALKY+   ++        P     EE     L  S   T    +   +  KC+  A  
Sbjct: 281  MQALKYIGNKVRRQRMWGGGPKKTKIEEARE--LLASTILTHVPVKEFNFRAKCIYTAVM 338

Query: 374  GRR--------KCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTV 425
             RR        K D+RD + NKRLELAG+LL    +         M K   + +   R  
Sbjct: 339  VRRVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAA 398

Query: 426  R-PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQ 484
            +  +  ++    +TNG+  A STG WS    + +R  G+   L R + +  L  + R   
Sbjct: 399  QFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISS 457

Query: 485  QVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFN 543
            Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + + PI +   N
Sbjct: 458  QFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASN 517

Query: 544  SGMEKL----ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIK 599
             G+E +     ++ SY     F VF++G+ +GV +D    V+  R  RR   +   V I 
Sbjct: 518  LGVEDVNLLCGEELSYP--NVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSIS 575

Query: 600  RDELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHGIIELVGT 653
             +     V I  D GR+ RP ++V+          ++ L      F+  L   ++E +  
Sbjct: 576  TNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDV 635

Query: 654  EEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQS 713
             EE DC  A     + KD         TH E++   LLG+  G+IP+ +H+ + R  YQ 
Sbjct: 636  NEENDCNIALYEHTINKDT--------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC 687

Query: 714  QKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYN 773
                 QA+G    N   R+DTL + L YPQ+P+ +T   +           ++   +L  
Sbjct: 688  -AMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIE-----------LIEFEKLPA 735

Query: 774  GQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMV 833
            GQNA VAV  + GY+ ED+LV+N+ASL+RG  R    ++ K  +     Q   +    M+
Sbjct: 736  GQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPML 795

Query: 834  NFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA----------------DH 877
            +    +  I R + LD DG    G  +++  +++ K   +                  D 
Sbjct: 796  D-AATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDV 854

Query: 878  SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQE 937
             I  K      ++KV++SSN +      + LRQ R P +GDKFSS HGQKGV G +  QE
Sbjct: 855  PITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQE 914

Query: 938  NFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPS 997
            + PF   GI PDI++NPH FPSR T G+L+E   GK       G+  G   Y T F    
Sbjct: 915  DMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKA------GVLDGRFHYGTAFGGSK 968

Query: 998  VDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPV 1057
            V  + E L R G++  G + +  G TGE + + I+ GP +YQ+L HM  DK+  R  GP 
Sbjct: 969  VKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPR 1028

Query: 1058 HPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVAN 1117
              LTRQP   R R GG++ GEMERDCLI +GA+  L ERL   SD++++ +C +C     
Sbjct: 1029 AVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQC----- 1083

Query: 1118 VIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
                    G      +C  C S   +    +PY  KLL QEL SM I
Sbjct: 1084 --------GLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNI 1122


>gi|46195739|ref|NP_081699.1| DNA-directed RNA polymerase III subunit RPC2 [Mus musculus]
 gi|51704303|sp|P59470.2|RPC2_MOUSE RecName: Full=DNA-directed RNA polymerase III subunit RPC2; Short=RNA
            polymerase III subunit C2; AltName: Full=C128; AltName:
            Full=DNA-directed RNA polymerase III 127.6 kDa
            polypeptide; AltName: Full=DNA-directed RNA polymerase
            III subunit B
 gi|45829714|gb|AAH68143.1| Polymerase (RNA) III (DNA directed) polypeptide B [Mus musculus]
          Length = 1133

 Score =  480 bits (1236), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 367/1185 (30%), Positives = 554/1185 (46%), Gaps = 146/1185 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYASMRFG 89
            +F    GLV   I+S+N FI   ++K        I++     +   +  W  +Y ++  G
Sbjct: 32   AFLKVKGLVKQHIDSFNYFINVEIKK--------IMKANEKVTSDADPMWYLKYLNIYVG 83

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
               +++ SF          + P   RL++MTYS+ + V +++              T   
Sbjct: 84   LPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEY--------------TRGS 123

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
            Q I +  L        IGR+P+M++S  C + G       +  +C  D GGYFI+KG EK
Sbjct: 124  QRIIRNALP-------IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEK 176

Query: 204  VFVAQEQICLKRLWVS----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            V + QEQ+   R+ V      ++G +V   +  K++R      +M+    +K G   L  
Sbjct: 177  VILIQEQLSKNRIIVEADRKGAVGASVTSSTHEKKSR-----TNMA----VKQGRFYLRH 227

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
              LS +IPI I+F A+GV SD+EIV +I     +  ++     S+ +   K   F +   
Sbjct: 228  NTLSEDIPIVIIFKAMGVESDQEIVQMIG---TEEHVMAAFGPSLEEC-QKAQIFTQ-MQ 282

Query: 320  ALKYVDKLIKGTTF----PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGR 375
            ALKY+   ++        P     EE     L  S   T    +   +  KC+  A   R
Sbjct: 283  ALKYIGNKVRRQRMWGGGPKKTKIEEARE--LLASTILTHVPVKEFNFRAKCIYTAVMVR 340

Query: 376  R--------KCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR- 426
            R        K D+RD + NKRLELAG+LL    +         M K   + +   R  + 
Sbjct: 341  RVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQF 400

Query: 427  PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
             +  ++    +TNG+  A STG WS    + +R  G+   L R + +  L  + R   Q 
Sbjct: 401  DVVKHMRQDQITNGMVNAISTGNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQF 459

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSG 545
            + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + + PI +   N G
Sbjct: 460  EKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAGNLG 519

Query: 546  MEKL----ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
            +E +     ++ SY     F VF++G+ +GV +D    VS  R  RR   +   V I  +
Sbjct: 520  VEDVNLLCGEELSYP--NVFLVFLNGNILGVIRDHKKLVSTFRLMRRAGYINEFVSISTN 577

Query: 602  ELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHGIIELVGTEE 655
                 V I  D GR+ RP ++V+          ++ L      F+  L   ++E +   E
Sbjct: 578  LTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNE 637

Query: 656  EEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQK 715
            E DC  A     + KD         TH E++   LLG+  G+IP+ +H+ + R  YQ   
Sbjct: 638  ENDCNIALYEHTINKDT--------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-A 688

Query: 716  HSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQ 775
               QA+G    N   R+DTL + L YPQ+P+ +T   +           ++   +L  GQ
Sbjct: 689  MGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIE-----------LIDFEKLPAGQ 737

Query: 776  NAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF 835
            NA VAV  + GY+ ED+LV+N+ASL+RG  R    ++ K  +     Q   +    M++ 
Sbjct: 738  NATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLD- 796

Query: 836  GKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA----------------DHSI 879
               +  I R + LD DG    G  +++  +++ K   +                  D  I
Sbjct: 797  AATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPI 856

Query: 880  KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENF 939
              K      ++KV++SSN +      + LRQ R P +GDKFSS HGQKGV G +  QE+ 
Sbjct: 857  TYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDM 916

Query: 940  PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVD 999
            PF   GI PDI++NPH FPSR T G+L+E   GK       G+  G   Y T F    V 
Sbjct: 917  PFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKA------GVLDGRFHYGTAFGGSKVK 970

Query: 1000 AITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHP 1059
             + E L R G++  G + +  G TGE + + I+ GP +YQ+L HM  DK+  R  GP   
Sbjct: 971  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030

Query: 1060 LTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVI 1119
            LTRQP   R R GG++ GEMERDCLI +GA+  L ERL   SD++++ +C +C       
Sbjct: 1031 LTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQC------- 1083

Query: 1120 QRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
                  G      +C  C S   +    +PY  KLL QEL SM I
Sbjct: 1084 ------GLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNI 1122


>gi|426225175|ref|XP_004006743.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Ovis aries]
          Length = 1133

 Score =  480 bits (1236), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 366/1185 (30%), Positives = 555/1185 (46%), Gaps = 146/1185 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYASMRFG 89
            +F    GLV   I+S+N FI   ++K        I++     +   +  W  +Y ++  G
Sbjct: 32   AFLKVKGLVKQHIDSFNYFINVEIKK--------IMKANEKVTSDADPMWYLKYLNIYVG 83

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
               +++ SF          + P   RL++MTYS+ + V +++              T   
Sbjct: 84   LPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEY--------------TRGS 123

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
            Q I +  L        IGR+P+M++S  C + G       +  +C  D GGYFI+KG EK
Sbjct: 124  QRIIRNALP-------IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEK 176

Query: 204  VFVAQEQICLKRLWVS----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            V + QEQ+   R+ V      ++G +V   +  K++R      +M+    +K G   L  
Sbjct: 177  VILIQEQLSKNRIIVEADRKGAVGASVTSSTHEKKSR-----TNMA----VKQGRFYLRH 227

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
              LS +IPI I+F A+GV SD+EIV +I     +  ++     S+ +   K   F +   
Sbjct: 228  NTLSEDIPIVIIFKAMGVESDQEIVQMIG---TEEHVMAAFGPSLEEC-QKAQIFTQ-MQ 282

Query: 320  ALKYVDKLIKGTTF----PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGR 375
            ALKY+   ++        P     EE     L  S   T    +   +  KC+  A   R
Sbjct: 283  ALKYIGNKVRRQRMWGGGPKKTKIEEARE--LLASTILTHVPVKEFNFRAKCIYTAVMVR 340

Query: 376  R--------KCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR- 426
            R        K D+RD + NKRLELAG+LL    +         M K   + +   R  + 
Sbjct: 341  RVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQF 400

Query: 427  PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
             +  ++    +TNG+  A STG WS    + +R  G+   L R + +  L  + R   Q 
Sbjct: 401  DVVKHMRQDQITNGMVNAISTGNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQF 459

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSG 545
            + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + + PI +   N G
Sbjct: 460  EKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLG 519

Query: 546  MEKLA----DDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
            +E ++    ++ SY     F VF++G+ +GV +D    V+  R  RR   +   V I  +
Sbjct: 520  VEDVSLLCGEELSYP--NVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTN 577

Query: 602  ELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHGIIELVGTEE 655
                 V I  D GR+ RP ++V+          ++ L      F+  L   ++E +   E
Sbjct: 578  LTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNE 637

Query: 656  EEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQK 715
            E DC  A     + KD         TH E++   LLG+  G+IP+ +H+ + R  YQ   
Sbjct: 638  ENDCNIALYEHTINKDT--------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-A 688

Query: 716  HSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQ 775
               QA+G    N   R+DTL + L YPQ+P+ +T   +           ++   +L  GQ
Sbjct: 689  MGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIE-----------LIEFEKLPAGQ 737

Query: 776  NAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF 835
            NA VAV  + GY+ ED+LV+N+ASL+RG  R    ++ K  +     Q   +    M++ 
Sbjct: 738  NATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLD- 796

Query: 836  GKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA----------------DHSI 879
               +  I R + LD DG    G  +++  +++ K   +                  D  I
Sbjct: 797  AATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPI 856

Query: 880  KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENF 939
              K      ++KV++SSN +      + LRQ R P +GDKFSS HGQKGV G +  QE+ 
Sbjct: 857  TYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDM 916

Query: 940  PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVD 999
            PF   GI PDI++NPH FPSR T G+L+E   GK       G+  G   Y T F    V 
Sbjct: 917  PFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKA------GVLDGRFHYGTAFGGSKVK 970

Query: 1000 AITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHP 1059
             + E L R G++  G + +  G TGE + + I+ GP +YQ+L HM  DK+  R  GP   
Sbjct: 971  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030

Query: 1060 LTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVI 1119
            LTRQP   R R GG++ GEMERDCLI +GA+  L ERL   SD++++ +C +C       
Sbjct: 1031 LTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQC------- 1083

Query: 1120 QRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
                  G      +C  C S   +    +PY  KLL QEL SM I
Sbjct: 1084 ------GLLGYSGWCHFCKSSCHVSSLRIPYACKLLFQELQSMNI 1122


>gi|6606127|gb|AAF19076.1|AF107804_1 DNA-dependent RNA polymerase II RPB140 [Pleospora tarda]
          Length = 942

 Score =  480 bits (1236), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 323/979 (32%), Positives = 485/979 (49%), Gaps = 140/979 (14%)

Query: 201  AEKVFVAQEQICLKRLWV----SNSMGWTVAYKSENKRNRLIVRLVDMSKFED------- 249
            +EKV +AQE+     + V       + W    +S  ++   ++   ++   E+       
Sbjct: 1    SEKVLIAQERSAANIVQVFRKKQGPIPWIAEIRSAVEKGTRLISSFNIKWAENSLAGHGK 60

Query: 250  -IKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDAD 308
             I G     ++ ++  ++P+ I+F ALG+ SD+EI++ I +   D  +L +L  SI +  
Sbjct: 61   RIPGPFAYATLPYIKADVPMAIVFRALGIVSDEEILSHIVYDRTDTQMLELLKPSIEEGS 120

Query: 309  NKCDE-------FRKGRNA------LKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTK 355
               D         ++G N+      LK+   +++   F P  S +E  +T          
Sbjct: 121  VVQDRETALDFIAKRGANSGTKDRRLKFARDIMQ-REFLPHISQKEGQDT---------- 169

Query: 356  QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKAL 415
            +KA F GYM+  LLQ   GRR  D+RD F  KRL+LAG L+    ++      K + K L
Sbjct: 170  RKAYFFGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRILFLKLTKDVYKYL 229

Query: 416  QRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQT 475
            QR +  ++    ++  + ASI+TNGL  + +TG W    K     +G+   L R     T
Sbjct: 230  QRCVENNQDFN-VQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTYAST 288

Query: 476  LVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SIL 534
            L  LRRT   V   GK+   R  H SHWG +C   TP+G+ CGLVKNL +   VS  S  
Sbjct: 289  LSHLRRTNTPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSDA 348

Query: 535  EPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPT 594
             PI + +    M+ L +          KVFV+G W+GV  ++   V+ ++  RR   L  
Sbjct: 349  SPIIDFMTQRNMQLLEEYDQNQNPDATKVFVNGVWVGVHSNAQQLVTVVQELRRNGTLSY 408

Query: 595  QVEIKRDELQSEVRIFMDAGRILRPLLVVEN----------------MGKIKS------- 631
            ++ + RD    E +IF DAGR++RPL VVEN                  K+K+       
Sbjct: 409  EMSLIRDIRDREFKIFTDAGRVMRPLFVVENDFRRENRNQLVFTKAISNKLKAEQQETST 468

Query: 632  --------LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYL--------------- 668
                    +E   Y ++ L+  G++E +  EEEE     +  + L               
Sbjct: 469  RQGWSQEEVENATYGWRGLIQDGVVEYLDAEEEETAMITFSPEDLEEWREMKMGLPAVER 528

Query: 669  ----------LKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSS 718
                      LK   D +   +THCE+  + +LG+   IIPF +H+ + R  YQS     
Sbjct: 529  STEGKDRLRRLKPAPDPRIHAYTHCEIHPAMILGICASIIPFPDHNQSPRNTYQS-AMGK 587

Query: 719  QAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAI 778
            QA+G   TN ++R++T+ + L+YPQ+PL  T   +            L   EL  GQNAI
Sbjct: 588  QAMGVALTNFALRMETMMNVLYYPQKPLATTRSME-----------YLKFRELPAGQNAI 636

Query: 779  VAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK- 837
            VA+  + GYNQEDS++MN++S++RG+FRS   R+Y         Q KR   + +  F K 
Sbjct: 637  VAIATYGGYNQEDSVIMNQSSIDRGLFRSLFYRAYTE-------QEKRIGVNVLEQFEKP 689

Query: 838  -----IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH--------------- 877
                 ++ K G  D LDDDG    G  +   DI+IGK A    D                
Sbjct: 690  TRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIATDAQELGQKTTLHTKRDV 749

Query: 878  SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQE 937
            S  L+ TE G+V +V+ ++N +G  F  V  R  + P +GDKF+S HGQKG +G    QE
Sbjct: 750  STPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRQE 809

Query: 938  NFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPS 997
            + PF+ +G+ PD++INPHA PSR T   L+E  L K       G  +G +  ATPF   +
Sbjct: 810  DMPFSKEGLTPDLIINPHAIPSRMTIAHLVECLLSK------VGAITGQEGDATPFTDVT 863

Query: 998  VDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPV 1057
            VD +++ L  AG+ K G E +Y+G TG+ +R+ IF+GPT+YQRL HM +DK+  R  GP+
Sbjct: 864  VDQVSQLLEDAGYQKRGFEIMYNGHTGKKMRTQIFLGPTYYQRLRHMVDDKIHARARGPL 923

Query: 1058 HPLTRQPVADRKRFGGIKF 1076
              LTRQPV  R R GG++F
Sbjct: 924  QILTRQPVEGRARDGGLRF 942


>gi|120561261|gb|ABM27015.1| RNA polymerase II second largest subunit, partial [Allomyces
            macrogynus]
          Length = 896

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 322/934 (34%), Positives = 484/934 (51%), Gaps = 105/934 (11%)

Query: 201  AEKVFVAQEQICLKRLWV-SNSMGWTVAYKSENKRN------RLIVRLVDMSKFEDIKGG 253
            +EKV +AQE+     ++V S      V +++E +         L   +V MS+ ++I   
Sbjct: 1    SEKVIIAQERTATNTVFVFSKPPPSAVLFQAEIRSQAEDGPKTLSSFIVKMSRDQNITA- 59

Query: 254  EKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD- 312
                S+ ++  +IPI +LF ALG+ +D++I+  I +   D  +L +L  SI +A    + 
Sbjct: 60   ----SLPYIQQDIPIMVLFRALGLVADRDILERICYDFSDDQMLEMLKPSIDNAFTIQER 115

Query: 313  ----EF--RKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGT----KQKARFLG 362
                +F  ++GRN     DK I+           + +   L P +  T     +K+ F+G
Sbjct: 116  EVALDFIGKRGRNIGLTRDKRIR--------YAHDLLERELLPHIGITPGCQTRKSYFIG 167

Query: 363  YMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGD 422
            YMV  LL A  GRR+ D+RD F  KRL+LAG LL    +       K +++     +   
Sbjct: 168  YMVHRLLLAALGRRQVDDRDHFGKKRLDLAGPLLASLFRTFFQKLTKDVSRYFTVCIERG 227

Query: 423  RTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
            R    +   ++++ +TNGL  A +TG W    K  E  +G+   L R     TL  LRR 
Sbjct: 228  REFN-LNMAINSNTITNGLRYALATGNWGDQKKFMETRAGVSQVLNRYTFASTLSHLRRL 286

Query: 483  RQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQL 541
               +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  S   PI E L
Sbjct: 287  NTPIGREGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMAYISVGSASGPILEFL 346

Query: 542  FNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
                 E L +  + ++G   KVFV+G W+G+ +   S V  L   RR  ++  +V + RD
Sbjct: 347  EEWTTENLEEITASAIGSNTKVFVNGSWVGIHRQPDSLVQTLISLRRSGDIMPEVSVVRD 406

Query: 602  ELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGIIELVGTE 654
               +E+RI+ DAGRI RPL +V    +       +  LE   + ++ LL +GI+E + TE
Sbjct: 407  VRDNELRIYTDAGRICRPLFIVNEQQQLVLRRDHVARLEVGEWGWEELLANGIVEYLDTE 466

Query: 655  EEED---CCTAWGIKYLLKD-IEDKKPI----------------KFTHCELDMSFLLGLS 694
            EEE    C T   +     D I DK  +                +++HCE+  S +LG+ 
Sbjct: 467  EEETTMICMTPDDLAESRGDPIPDKSKLDKTARLKSRKAGDVCKQWSHCEIHPSMILGIC 526

Query: 695  CGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDC 754
              IIPF +H+ + R  YQS     QA+G   TN  +R+DTL++ L+YPQ+PL  T     
Sbjct: 527  ASIIPFPDHNQSPRNTYQS-AMGKQAMGLYLTNFQLRMDTLANILYYPQKPLVATR---- 581

Query: 755  LGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYK 814
                       L   EL  GQNA+VA+ V+ GYNQEDS++MN++S++RG+FRS + R+Y 
Sbjct: 582  -------SMKYLRFRELPAGQNAVVAIAVYSGYNQEDSIIMNQSSIDRGLFRSIYYRAYM 634

Query: 815  AEVDNKEMQVKRRSSDDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDIVIG 868
                    Q K+    D+  F K      ++ + G  D +++DG    G  +   DI+IG
Sbjct: 635  D-------QEKKSGFSDVETFEKPARETTLKLRHGSYDKIEEDGLVAPGTRVTGDDIIIG 687

Query: 869  KYA-------DSGA-------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSP 914
            K A       + GA       D S  LK TE+G+V  V+L++N+DG  F  V +R  R P
Sbjct: 688  KTAPLPPDTSEMGARTTQTKKDVSTSLKSTEQGIVDHVMLTTNNDGYKFVKVRVRSTRVP 747

Query: 915  CLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKG 974
             +GDKF+S HGQKG +G    QE+ PF+  G+ PD+++NPHA PSR T G L+E  L K 
Sbjct: 748  QMGDKFASRHGQKGTVGMTYRQEDMPFSADGVTPDLIVNPHAIPSRMTIGHLVECLLSK- 806

Query: 975  IAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIG 1034
                  G  +G +  ATPF   +V  I ++L   G+ + G E +Y+G TG+ + + +F G
Sbjct: 807  -----VGSLTGTEGDATPFTDITVQEIADRLRSCGYQQRGFEIMYNGHTGKKLAAQVFFG 861

Query: 1035 PTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADR 1068
            PT+YQRL HM +DK+  R  GP+  LTRQPV  R
Sbjct: 862  PTYYQRLKHMVDDKIHSRARGPLQILTRQPVEGR 895


>gi|255569145|ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, putative [Ricinus communis]
 gi|223535120|gb|EEF36800.1| DNA-directed RNA polymerase III subunit, putative [Ricinus communis]
          Length = 1139

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 360/1186 (30%), Positives = 568/1186 (47%), Gaps = 145/1186 (12%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETI--VEPGYDPSKKGEGEWRYASMRFGQ 90
            F    GLV   ++S+N F+  G++K   +    +  V+PG               +RF  
Sbjct: 44   FLKVRGLVKQHLDSFNYFVNIGIKKIVRANDRIVSTVDPG-------------IYLRFKD 90

Query: 91   VTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
            V +  PS      G    + P   RL + TY++ + V V++   +  + T          
Sbjct: 91   VRIGTPSDIMD--GVSEQLSPHMCRLSDKTYAAPILVNVEYIYGSHDQKTRV-------- 140

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKV 204
                     E  +++IGR+P+M++S  C + G ++      G+C  D GGYF+IKG EKV
Sbjct: 141  ---------EKNDVVIGRMPIMLRSRSCVLYGKDEAELARLGECPLDPGGYFVIKGTEKV 191

Query: 205  FVAQEQICLKRLWVSN----SMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVY 260
             + QEQ+   R+ +      ++  +V   +E  +++ I+++     +         L + 
Sbjct: 192  ILIQEQLSKNRIIIDTDKKGNINASVTSSTEATKSKTIIQMEKEKMY---------LCLN 242

Query: 261  FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNA 320
                +IPI ++  A+G+ SD+E+V ++     D     +L  SI +           + A
Sbjct: 243  QFVKKIPIMVVIKAMGMESDQEVVQMVG---RDPRYSALLLPSIEECAGL--SIYTQQKA 297

Query: 321  LKYVD-KLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCD 379
            L+Y+D K  +  T        +     +    +  + K  ++  M++ +++A   +   D
Sbjct: 298  LEYLDGKENRALTI-----LRDVFLANVPVHKNNFRPKCLYVAVMLRRMMEAMLNKDAMD 352

Query: 380  NRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDRTVR-PIEYYLDA 434
            ++D   NKRLEL+G+L+    E   K  I   ++ +   L +    +R+ R  +  Y+  
Sbjct: 353  DKDYVGNKRLELSGQLISLLFEDLFKTMITEVQRTIDTVLTKQ---NRSSRFDLAQYIVR 409

Query: 435  SILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGD 494
              +TNGL R  STG +     +  R  G+   L R + + +L  + R   Q + + KV  
Sbjct: 410  DNITNGLERTLSTGNFDVKRFKMHR-KGMTQVLVRLSYIASLGMMTRVSPQFEKSRKVSG 468

Query: 495  ARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKLADDA 553
             R   PS WG +C   TP+GE CGLVKNL +   V+T   E P+    +  G+E L   +
Sbjct: 469  PRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDDEEGPLISLCYCLGVEDLELLS 528

Query: 554  SYSL--GGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFM 611
               L     F V  +G  +G  +    FV+ +R+ RR  ++   V +  +E Q  V +  
Sbjct: 529  GEELHTPNSFLVIFNGLILGKHRRPQYFVNSMRKLRRAGKIGEFVSVFVNEKQRAVYLAS 588

Query: 612  DAGRILRPLLVVE-NMGKIKSLEGKNY-----TFQALLDHGIIELVGTEEEEDCCTAWGI 665
            D GR+ RPL++ +  + +IK    K       TF   L  G+IE +   EE +   A   
Sbjct: 589  DGGRVCRPLVIADRGVSRIKEHHMKELRDGVRTFDDFLRDGLIEYLDVNEENNALVAL-- 646

Query: 666  KYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPT 725
                   E +   + TH E++   +LG+  G+IPF +H+ + R  YQ      QA+G   
Sbjct: 647  ------YEGEATPETTHIEIEPFTILGVCAGLIPFPHHNQSPRNTYQC-AMGKQAMGNIA 699

Query: 726  TNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHL 785
             N   R+D+L + L YPQRPL  T   + +G    G            GQNA VAV  + 
Sbjct: 700  YNQLFRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGA-----------GQNATVAVMSYS 748

Query: 786  GYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRV 845
            GY+ ED++VMN+ASL+RG  R   ++ Y A       + +  +SD ++   +    + R 
Sbjct: 749  GYDIEDAIVMNKASLDRGFGRCIVMKKYPA----IRQKYENGASDRIL---RPDRTVERE 801

Query: 846  DSLDDDGFPFIGANLQSGDIVI---------GKYADSGADHSIKLKHT---------ERG 887
              LD DG    G  ++  DI +         G    S A  +IK + +         E  
Sbjct: 802  RVLDYDGLAAPGEIIKPSDIYVKKECPIDTMGPVKSSAALENIKYRPSPLSYKGPEGESP 861

Query: 888  MVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIV 947
            ++ +V LSS+ +      V +R  R P +GDKFSS HGQKGV G +  QE+FPF+ +GI 
Sbjct: 862  VIDRVALSSDRNNNLCIKVMIRHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSERGIC 921

Query: 948  PDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPS-----VDAIT 1002
            PD+++NPH FPSR T G+++E   GK       G+  G   Y + F  PS     V+AI+
Sbjct: 922  PDLIMNPHGFPSRMTVGKMIELLGGKA------GVSCGRFHYGSAFGEPSGHADTVEAIS 975

Query: 1003 EQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTR 1062
            E L   GFS  G + +Y G TG  +++ IF+GP +YQ+L HM  DK+  R  GP   LTR
Sbjct: 976  ETLVNRGFSYNGKDIIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGNGPRVMLTR 1035

Query: 1063 QPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRV 1122
            QP   R R GG++ GEMERDCLIA+GA+  + ERL   SD +++ +CR C  +    Q  
Sbjct: 1036 QPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMISSDPFEVQVCRVCGLLGYFNQ-- 1093

Query: 1123 VGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
                 K+R   C  C +GD+I    +PY  KLL QEL SM I  + 
Sbjct: 1094 -----KLRAGICSTCKNGDNISTMKLPYACKLLIQELQSMNIVPRL 1134


>gi|361131372|gb|EHL03070.1| putative DNA-directed RNA polymerase III subunit RPC2 [Glarea
            lozoyensis 74030]
          Length = 1184

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 364/1199 (30%), Positives = 566/1199 (47%), Gaps = 147/1199 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+S+N FI+  +++   +     +    DP+           + +  +
Sbjct: 67   AFLKVKGLVKQHIDSFNFFIETEIKEIVKA--NKRITSDADPN---------FFLEYEDI 115

Query: 92   TLDKPSFF-AGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
            T+  P     G+    +++ P   RL++MTY++ ++V          R T  K  T R  
Sbjct: 116  TVGIPERLDYGDRKALNEITPNECRLRDMTYAAPIRVTF--------RYTKGKQMTRR-- 165

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKV 204
                       ++I IGR+P+M+KS  C + G       +  +C  D GGYFI+ G EKV
Sbjct: 166  -----------SHIPIGRMPIMLKSATCRLAGKNDRQMAQMNECALDPGGYFIVNGTEKV 214

Query: 205  FVAQEQICLKRLWVSN--SMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKV-LSVYF 261
             + QEQ+   R+ V      G T A  + +   R     V M K       +++ L    
Sbjct: 215  ILVQEQLSKNRVIVEADPKKGITSASVTSSTHERKSKSYVTMKK-------DRIWLQHNI 267

Query: 262  LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNAL 321
            L+  +PI I+  A+G+ SD E++ L+    ED       FA + +   K   F + + AL
Sbjct: 268  LTEPVPIVIVLKAMGIQSDHEMMFLVAGEDED---YQDEFAVMFEEAAKAGVFSQ-QQAL 323

Query: 322  KYVDKLIKGTT------FPPG--------ESTEECMNTYLFPSLHGTKQKARFLGYMVKC 367
            +Y+   +K  +       PP         E+    + T++       + KA ++ +MV+ 
Sbjct: 324  EYLGARVKMGSKPRVGGAPPRRNHIQDALEALANIIITHVPVVGLDFRPKALYICFMVRR 383

Query: 368  LLQAYSGRRKCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKRMAKALQ 416
            +L A    +  D+RD   NKRLELAG+LL             +LK++I     +  +  +
Sbjct: 384  VLMAVKDPKLVDDRDYVGNKRLELAGQLLSLLFEDLFKKFNTDLKMNIDKVLSKKNRTSE 443

Query: 417  RDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTL 476
             D +              + +T G++RA STG WS    + ER +G+   L R + +  L
Sbjct: 444  FDAFNHMQSH-------GNYITLGMNRAISTGNWSVKRFKMER-AGVTHVLSRLSYISAL 495

Query: 477  VDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLVSTSILE 535
              + R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL + T + +    E
Sbjct: 496  GMMTRISSQFEKTRKVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHITTYDDEE 555

Query: 536  PIFEQLFNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVSELRRKRRRKELP 593
            PI + +F  G E +   +   + GK  + +FV+G  + +     +F++  R  RR+  + 
Sbjct: 556  PIKKLVFFLGAEDILSVSGQEIHGKGAYVIFVNGTPLALTVQPKTFLTSFRNFRRQGRVS 615

Query: 594  TQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGI 647
              V I  +     V I  D GRI RPL+VVEN         +++L      F   L  G+
Sbjct: 616  AFVSIYINHHTKAVHIATDEGRICRPLIVVENNKPKVTKKSLEALRSGKMDFDDFLYRGM 675

Query: 648  IELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHAR 707
            +E V   EE D   A      L + +       TH E++   +LG   G+IP+ +H+ + 
Sbjct: 676  VEYVDVNEENDTLIA------LTEHDALTTAGITHLEIEPFTILGAVAGLIPYPHHNQSP 729

Query: 708  RVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILP 767
            R  YQ      QAIG    N   R+DTL + + YPQ+P+ ++   +           ++ 
Sbjct: 730  RNTYQC-AMGKQAIGAIAYNQFSRIDTLLYLMVYPQQPMVKSRTIE-----------LIK 777

Query: 768  RPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRR 827
              +L  GQNA VAV    GY+ ED+LV+N+AS +RG  R +  R Y  +      + + R
Sbjct: 778  YDKLPAGQNATVAVMSFSGYDIEDALVLNKASCDRGFGRCQVFRKYATQFRKYPNRTQDR 837

Query: 828  SSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKY-----------ADSGAD 876
              D  ++         +   L  DG   +G  + SG+  + K            +D G +
Sbjct: 838  IGDKQMDERDPSKPSKKHAILGSDGMALVGEQVNSGETYLNKEVPINTGGNGIGSDVGTN 897

Query: 877  HSIKLKHTER----GMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGF 932
                   T R      + K+++S  ++      V  RQ R P LGDKFSS HGQKGV+G 
Sbjct: 898  EHKPAPMTYRLPDPSYIDKIMISQTENETMVIKVQTRQTRRPELGDKFSSRHGQKGVVGI 957

Query: 933  LESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATP 992
            + +QE+ PF   G+ PDI++NPH FPSR T G++LE   GK       G+ +G   Y T 
Sbjct: 958  IVNQEDMPFADSGVTPDIIMNPHGFPSRMTVGKMLELLSGKA------GVLNGSLEYGTA 1011

Query: 993  FATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFR 1052
            F   +VD + + L + GFS  G + +  G TGE + + IF GP +YQ+L HM +DK+  R
Sbjct: 1012 FGGSNVDDMGDILIKNGFSYSGKDFVTSGITGESLPAYIFFGPIYYQKLKHMVQDKMHSR 1071

Query: 1053 NTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKC 1112
            + GP   LTRQP   R R GG++ GEMERDCLIA+GA+  L ERL   SD++++ IC  C
Sbjct: 1072 SRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMLSSDAHEVDICEVC 1131

Query: 1113 KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                        G    +G +C+ C S   + +  +PY AKLL QEL SM + ++   E
Sbjct: 1132 ------------GMMGFQG-WCQTCKSTAGVTRMTMPYAAKLLVQELLSMNVLVRLRLE 1177


>gi|89274890|gb|ABD65886.1| RNA polymerase II second largest subunit, partial [Ganoderma tsugae]
          Length = 883

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 307/865 (35%), Positives = 456/865 (52%), Gaps = 85/865 (9%)

Query: 258  SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG 317
            ++ ++  +IPIW++F ALGV SD++I+  I +  +D  +L +L   I +     D     
Sbjct: 46   TIPYIKIDIPIWVVFRALGVISDRDILEHICYDMQDNQMLEMLKPCIDEGFVIQDR---- 101

Query: 318  RNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSLH----GTKQKARFLGYMVKCL 368
              AL Y+    +GTT            +E +   + P +        +KA F GYM+  L
Sbjct: 102  EIALDYIGN--RGTTTGLNRERRLRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRL 159

Query: 369  LQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPI 428
            L A   RR  D+RD F  KRL+LAG LL    ++      K + + LQ+ +   +    I
Sbjct: 160  LLAALERRDLDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFN-I 218

Query: 429  EYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQY 488
               +  + +TNGL  + +TG W    K     +G+   L R     TL  LRR    +  
Sbjct: 219  SLAVKHNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGR 278

Query: 489  TGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGME 547
             GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S   L  P+ E L   G+E
Sbjct: 279  EGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGTLSAPVIEFLEEWGLE 338

Query: 548  KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEV 607
             L ++A  S     KVFV+G W+GV +D +  VS LR+ RR+ ++  +V + RD  + E+
Sbjct: 339  SLEENAHASTPCT-KVFVNGVWMGVHRDPVKLVSTLRKLRRKDDINCEVSVVRDIREREL 397

Query: 608  RIFMDAGRILRPLLVVEN------------MGKIKSLEGKNYTFQALLDHGIIELVGTEE 655
            R++ DAGR+ RPL +VEN            + + K     +Y + +LL  G+IEL+  EE
Sbjct: 398  RLYTDAGRVCRPLFIVENQQLLIQKKHIESLVRAKEDPTLSYNWDSLLKDGVIELLDAEE 457

Query: 656  EED---CCT----------AWGIKYLLKDIED-----KKPIK---FTHCELDMSFLLGLS 694
            EE    C T          A GI     +  D     K P     +THCE+  S +LG+ 
Sbjct: 458  EETVMICMTPEDLENSRLQAAGIDPHADEENDPSARLKAPTSAHTWTHCEIHPSMILGVC 517

Query: 695  CGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDC 754
              IIPF +H+ + R  YQS     QA+G   TN  IR+DT+++ L+YPQ+PL  T   + 
Sbjct: 518  ASIIPFPDHNQSPRNTYQSAM-GKQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEY 576

Query: 755  LGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYK 814
            L              EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS + RSY 
Sbjct: 577  LR-----------FRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSY- 624

Query: 815  AEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA--- 871
             +++ K    +    +       ++ K G  D L+DDG    G N+   DI+IGK A   
Sbjct: 625  MDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTAPIP 684

Query: 872  ------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDK 919
                         +  D S  LK TE+G+V +V++++N +G+ F  + +R  R P +GDK
Sbjct: 685  PDSEELGQRTRTHTKRDVSTPLKSTEQGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGDK 744

Query: 920  FSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALG 979
            F+S HGQKG +G    QE+ PFT +GI PDI+INPHA PSR T G L+E  L K    +G
Sbjct: 745  FASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKLATLIG 804

Query: 980  KGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQ 1039
                   +  ATPF   +V+++++ L + G+   G E +Y G TG  +++ +++GPT+YQ
Sbjct: 805  N------EGDATPFTDLTVESVSQFLRQKGYQSRGLEIMYHGHTGRKLQAQVYLGPTYYQ 858

Query: 1040 RLIHMSEDKVKFRNTGPVHPLTRQP 1064
            RL HM +DK+  R  GPV  LTRQP
Sbjct: 859  RLKHMVDDKIHSRARGPVQILTRQP 883


>gi|300798312|ref|NP_001178807.1| DNA-directed RNA polymerase III subunit RPC2 [Rattus norvegicus]
          Length = 1133

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 367/1185 (30%), Positives = 554/1185 (46%), Gaps = 146/1185 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYASMRFG 89
            +F    GLV   I+S+N FI   ++K        I++     +   +  W  +Y ++  G
Sbjct: 32   AFLKVKGLVKQHIDSFNYFINVEIKK--------IMKANEKVTSDADPMWYLKYLNIYVG 83

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
               +++ SF          + P   RL++MTYS+ + V +++              T   
Sbjct: 84   LPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEY--------------TRGS 123

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
            Q I +  L        IGR+P+M++S  C + G       +  +C  D GGYFI+KG EK
Sbjct: 124  QRIIRNALP-------IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEK 176

Query: 204  VFVAQEQICLKRLWVS----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            V + QEQ+   R+ V      ++G +V   +  K++R      +M+    +K G   L  
Sbjct: 177  VILIQEQLSKNRIIVEADRKGAVGASVTSSTHEKKSR-----TNMA----VKQGRFYLRH 227

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
              LS +IPI I+F A+GV SD+EIV +I     +  ++     S+ +   K   F +   
Sbjct: 228  NTLSEDIPIVIIFKAMGVESDQEIVQMIG---TEEHVMAAFGPSLEEC-QKAQIFTQ-MQ 282

Query: 320  ALKYVDKLIKGTTF----PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGR 375
            ALKY+   ++        P     EE     L  S   T    +   +  KC+  A   R
Sbjct: 283  ALKYIGNKVRRQRMWGGGPKKTKIEEARE--LLASTILTHVPVKEFNFRAKCIYTAVMVR 340

Query: 376  R--------KCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR- 426
            R        K D+RD + NKRLELAG+LL    +         M K   + +   R  + 
Sbjct: 341  RVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQF 400

Query: 427  PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
             +  ++    +TNG+  A STG WS    + +R  G+   L R + +  L  + R   Q 
Sbjct: 401  DVVKHMRQDQITNGMVNAISTGNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQF 459

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSG 545
            + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + + PI +   N G
Sbjct: 460  EKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAGNLG 519

Query: 546  MEKL----ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
            +E +     ++ SY     F VF++G+ +GV +D    VS  R  RR   +   V I  +
Sbjct: 520  VEDVNLLCGEELSYP--NVFLVFLNGNILGVIRDHKKLVSTFRLMRRAGYINEFVSISTN 577

Query: 602  ELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHGIIELVGTEE 655
                 V I  D GR+ RP ++V+          ++ L      F+  L   ++E +   E
Sbjct: 578  LTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNE 637

Query: 656  EEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQK 715
            E DC  A     + KD         TH E++   LLG+  G+IP+ +H+ + R  YQ   
Sbjct: 638  ENDCNIALYEHTINKDT--------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-A 688

Query: 716  HSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQ 775
               QA+G    N   R+DTL + L YPQ+P+ +T   +           ++   +L  GQ
Sbjct: 689  MGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIE-----------LIDFEKLPAGQ 737

Query: 776  NAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF 835
            NA VAV  + GY+ ED+LV+N+ASL+RG  R    ++ K  +     Q   +    M++ 
Sbjct: 738  NATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLD- 796

Query: 836  GKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA----------------DHSI 879
               +  I R + LD DG    G  +++  +++ K   +                  D  I
Sbjct: 797  AATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPI 856

Query: 880  KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENF 939
              K      ++KV++SSN +      + LRQ R P +GDKFSS HGQKGV G +  QE+ 
Sbjct: 857  TYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDM 916

Query: 940  PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVD 999
            PF   GI PDI++NPH FPSR T G+L+E   GK       G+  G   Y T F    V 
Sbjct: 917  PFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKA------GVLDGRFHYGTAFGGSKVK 970

Query: 1000 AITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHP 1059
             + E L R G++  G + +  G TGE + + I+ GP +YQ+L HM  DK+  R  GP   
Sbjct: 971  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030

Query: 1060 LTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVI 1119
            LTRQP   R R GG++ GEMERDCLI +GA+  L ERL   SD++++ +C +C       
Sbjct: 1031 LTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQC------- 1083

Query: 1120 QRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
                  G      +C  C S   +    +PY  KLL QEL SM I
Sbjct: 1084 ------GLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNI 1122


>gi|302820918|ref|XP_002992124.1| hypothetical protein SELMODRAFT_430375 [Selaginella moellendorffii]
 gi|300140050|gb|EFJ06779.1| hypothetical protein SELMODRAFT_430375 [Selaginella moellendorffii]
          Length = 1440

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 363/1210 (30%), Positives = 572/1210 (47%), Gaps = 173/1210 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++SYN F+   ++K   + G   +    DP+   +         F  +
Sbjct: 326  AFHKVRGLVKQHLDSYNYFVNCEIKKIIHAKGNEKITSDVDPNFYIKYACDTFFQYFTNI 385

Query: 92   TLDKPSFFAGNGGDEHD-----MFPRHARLQNMTYSSRMKVKVQFQVYTQ-KRVTSDKFK 145
                   F G    E D     + P+  RL++MTYS+ + V ++   YT+ K + + K K
Sbjct: 386  LFRFLDIFVGTPSIEQDYIRQDITPQQCRLRDMTYSAPISVDIE---YTRGKDIITRKGK 442

Query: 146  TGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIK 199
             G+   +             IGR+PVM++S  C + G       + G+C  D GGYF++K
Sbjct: 443  DGQGAQV-------------IGRMPVMLRSSRCILTGKSDAELAKLGECPLDPGGYFVVK 489

Query: 200  GAEKVFVAQEQICLKRLWV-SNSMG-WTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVL 257
            G EKV + QEQ+   R+ + S+S G  ++A     K N                      
Sbjct: 490  GTEKVILIQEQLSKNRIIIDSDSTGSLSLAVHMRGKLN---------------------- 527

Query: 258  SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEF--R 315
                 S ++PI ++  A+G+ SD+EI+ ++     D     IL  S+ +    C      
Sbjct: 528  ---VFSDDVPIVVVMKAMGMESDQEIIQMVG---TDPKFAGILAPSMQE----CASLGVY 577

Query: 316  KGRNALKYVDKLI--------KGTTFPPGESTEECMNTYL-FPSLHGT--KQKARFLGYM 364
                AL+Y+   +        K T     E+ +  +N +L   ++H    + K  ++  M
Sbjct: 578  TTHQALEYLGTKVRVNRQWGSKQTKSKVDEARDILLNVFLAHVAVHKYDFRPKCIYVALM 637

Query: 365  VKCLLQAYSGRRKCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKRMAK 413
            ++ +L+A   +   D+RD   NKRLELAG+LL             ELK ++     +M +
Sbjct: 638  LRRMLEAILDKECVDDRDYVGNKRLELAGQLLALLFEDLFKRSCSELKSNVDRTLSKMNR 697

Query: 414  ALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPL 473
            A Q D+   ++++P        +LT+GL  A S+G W+    R ++  G+   + R + +
Sbjct: 698  ASQYDV--SKSLKP-------DMLTSGLENAISSGNWTVKRFRMDK-KGVTQVVSRLSYI 747

Query: 474  QTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI 533
              L  + R   Q + + KV   R   PS WG +C   TP+GE CGL KNL +   ++T  
Sbjct: 748  AALGHMTRVASQFEKSRKVSGPRSLQPSQWGMLCPCDTPEGEGCGLTKNLALMTHITTDD 807

Query: 534  LE-PIFEQLFNSGME--KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRK 590
             E P+ +   N G+E   L     +     F V  +G  +G+ +    F + +R+ RR  
Sbjct: 808  EEAPLIDLCTNLGVEDINLLSGEEFHSKNAFLVMFNGTILGIHRRPQQFATLMRKLRRAG 867

Query: 591  ELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN-MGKIKSLEGKNY-----TFQALLD 644
            ++   V I  +E Q  + I  D GR+ RP+++ ++ + +IK    K       TF   L 
Sbjct: 868  KIGEFVSIFVNEKQRCIYIASDGGRVCRPVVIADHGVSRIKEHHMKELKDGFRTFDDFLR 927

Query: 645  HGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHD 704
             G++E +   EE +   A          E +     TH E++   +LG+  G+IP+ +H+
Sbjct: 928  EGLVEYLDVNEENNALIAL--------YEKEADSTTTHIEIEPFTILGVCAGLIPYPHHN 979

Query: 705  HARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNH 764
             + R  YQ      QA+G    N   R+DTL + L YPQRPL  T   + +     G   
Sbjct: 980  QSPRNTYQC-AMGKQAMGNIAYNQLQRIDTLLYLLVYPQRPLLTTKSIELVNYDKLG--- 1035

Query: 765  ILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQV 824
                     GQNA VAV  + GY+ ED++VMN+ASL+RG  R   ++ +   V   E   
Sbjct: 1036 --------AGQNASVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVLKKFSCLVRKYE--- 1084

Query: 825  KRRSSDDMV---NFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---------- 871
              R+ D +V     G   S++     LD DG   +G  +   DI + K +          
Sbjct: 1085 -NRTMDRIVAPRQHGHATSQL-----LDQDGIASVGERIYDKDIFVNKESPKDVKTTFLN 1138

Query: 872  -----DSG---ADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSM 923
                 DS         K    E  +V KV+L++N+  +      +R  R P LGDKFSS 
Sbjct: 1139 PLALPDSAYRPTPQRYKGPLGESAIVDKVLLTTNESQQMVIKCQVRHTRRPELGDKFSSR 1198

Query: 924  HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGIC 983
            HGQKGV G +  Q++FPFT +G+ PD+++NPH FPSR T G+++E   GK       G+ 
Sbjct: 1199 HGQKGVCGTIVEQQDFPFTERGVCPDLIMNPHGFPSRMTVGKMIELLGGKA------GVQ 1252

Query: 984  SGLKRYATPFATPS-----VDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFY 1038
            SG   Y + F  PS     V+AI+  L + GFS  G + +Y G TG  +++ I++GP +Y
Sbjct: 1253 SGKYHYGSAFGEPSGHADTVEAISATLVKHGFSYCGKDLIYSGITGCPLQAYIYMGPIYY 1312

Query: 1039 QRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLF 1098
            Q+L HM  DK+  R  GP   LTRQP   R R GG++ GEMERDCL+A+G++  + ERL 
Sbjct: 1313 QKLKHMVLDKMHARAQGPRVVLTRQPTEGRSREGGLRLGEMERDCLVAYGSSMLILERLM 1372

Query: 1099 TLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQE 1158
              SD +Q+ +C  C  +            K++  +C  C +G+++    +PY  KLL QE
Sbjct: 1373 ISSDQFQVQVCTNCGLLGYY-------SHKLKMNFCSYCKNGENMAAMKLPYACKLLFQE 1425

Query: 1159 LFSMGITLKF 1168
            L SM I  + 
Sbjct: 1426 LQSMNIVPRL 1435


>gi|6606135|gb|AAF19080.1|AF107808_1 DNA-dependent RNA polymerase II RPB140, partial [Sclerotinia
            sclerotiorum]
          Length = 938

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 332/968 (34%), Positives = 484/968 (50%), Gaps = 122/968 (12%)

Query: 201  AEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE-----NKRNRLI----VRLVDMSKFEDI 250
            +EKV +AQE+     + V        V+Y +E      K +RLI    ++L D       
Sbjct: 1    SEKVLIAQERSAANIVQVFKKPANQAVSYLAEIRSALEKGSRLISSLQIKLYDKGDSGRG 60

Query: 251  KGGEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADN 309
              G+ V S   ++  +IPI I+F ALGV SD++I+N I +   D  +L +L   I +A  
Sbjct: 61   GFGKTVKSTLPYIKQDIPIAIVFRALGVVSDEDILNHICYDRNDTQMLEMLKPCIEEAFV 120

Query: 310  KCDEFRKGRNALKYVDKLIKGTTFPPGESTE---ECMNTYLFPSLH----GTKQKARFLG 362
              D       AL ++ K   GT+    +  +   + M   L P +        +KA FLG
Sbjct: 121  IQDR----EVALDFIGKRGNGTSLTRDKRIKYARDIMQKELLPHISQKEGSETRKAFFLG 176

Query: 363  YMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGD 422
            YMV  LLQ   GRR+ D+RD F  KRL+LAG LL +  +         + + LQR +  +
Sbjct: 177  YMVHKLLQCALGRRETDDRDHFGKKRLDLAGPLLAKLFRNLFRRLTTDVYRYLQRCVENN 236

Query: 423  RTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
            R    +   + ++ +TNGL  + +TG W    K     +G+   L R     TL  LRRT
Sbjct: 237  REFN-LTLGVKSTTITNGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRT 295

Query: 483  RQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQL 541
               +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   V+  +  +PI E +
Sbjct: 296  NTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYVTVGTPSDPIVEFM 355

Query: 542  FNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
                ME L +          KVFV+G W+GV +D    V  ++  RR   +  +V + R+
Sbjct: 356  IQRNMEVLEEYEPLRAPNATKVFVNGVWVGVHRDPAHLVKCVQDLRRSHLISHEVSLIRE 415

Query: 602  ELQSEVRIFMDAGRILRPLLVVEN-----------------------------MGKIKSL 632
                E +IF DAGR+ RPLLV++N                             M K + +
Sbjct: 416  IRDREFKIFTDAGRVCRPLLVIDNDPDSPNKGNLVLNKDHIRRLEDDQSLPSNMDKDEKV 475

Query: 633  EGKNYTFQALLDHGIIELVGTEEEEDCCTAW-------------GIKYLLKDIED----- 674
                Y FQ L++ G++E +  EEEE                   G +    D  D     
Sbjct: 476  HHGYYGFQGLINDGVVEYLDAEEEETVMITMTPEDLDISRQLQAGYQIRPDDSGDLNKRV 535

Query: 675  KKPIK-----FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPS 729
            K PI      +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN  
Sbjct: 536  KAPINPTAHVWTHCEIHPSMILGICASIIPFPDHNQSPRNCYQSAM-GKQAMGVFLTNFD 594

Query: 730  IRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQ 789
            +R+DT+++ L+YPQ+PL  T   +            L   EL  GQNAIVA+  + GYNQ
Sbjct: 595  VRMDTMANILYYPQKPLATTRSME-----------FLKFRELPAGQNAIVAIMCYSGYNQ 643

Query: 790  EDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK------IQSKIG 843
            EDS++MN++S++RG+FRS   R+Y         Q KR   + +  F K      ++ K G
Sbjct: 644  EDSVIMNQSSIDRGLFRSLFYRAYTD-------QEKRIGMNVVEQFEKPYRSDTLKLKQG 696

Query: 844  RVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH---------------SIKLKHTERGM 888
              + LDDDG    G  +   DI+IGK A    D                S  L+ TE G+
Sbjct: 697  TYEKLDDDGIVAPGVRVTGADIIIGKTAPIAPDSEEMGQRTKAHVKRDASTPLRSTESGL 756

Query: 889  VQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVP 948
            V +V+L++N +G  F  V +R  + P +GDKF+S HGQKG +G    Q++ PFT +G+VP
Sbjct: 757  VDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYMQQDMPFTREGVVP 816

Query: 949  DIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRA 1008
            D++INPHA PSR T   L+E  L K +++L      GL+  ATPF   +VD++++ L   
Sbjct: 817  DLIINPHAIPSRMTIAHLIECQLSK-VSSL-----RGLEGDATPFTEVTVDSVSKLLRAH 870

Query: 1009 GFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADR 1068
            G+   G E +Y G TG  + + +F+GPT+YQRL HM +DK+  R  GPV  LTRQPV  R
Sbjct: 871  GYHSRGFEIMYHGHTGRKMMAQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGR 930

Query: 1069 KRFGGIKF 1076
             R GG++F
Sbjct: 931  ARDGGLRF 938


>gi|300795995|ref|NP_001179718.1| DNA-directed RNA polymerase III subunit RPC2 [Bos taurus]
 gi|296487427|tpg|DAA29540.1| TPA: polymerase (RNA) III (DNA directed) polypeptide B [Bos taurus]
          Length = 1133

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 366/1185 (30%), Positives = 554/1185 (46%), Gaps = 146/1185 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYASMRFG 89
            +F    GLV   I+S+N FI   ++K        I++     +   +  W  +Y ++  G
Sbjct: 32   AFLKVKGLVKQHIDSFNYFINVEIKK--------IMKANEKVTSDADPMWYLKYLNIYVG 83

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
               +++ SF          + P   RL++MTYS+ + V +++              T   
Sbjct: 84   LPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEY--------------TRGS 123

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
            Q I +  L        IGR+P+M++S  C + G       +  +C  D GGYFI+KG EK
Sbjct: 124  QRIIRNALP-------IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEK 176

Query: 204  VFVAQEQICLKRLWVS----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            V + QEQ+   R+ V      ++G +V   +  K++R      +M+    +K G   L  
Sbjct: 177  VILIQEQLSKNRIIVEADRKGTVGASVTSSTHEKKSR-----TNMA----VKQGRFYLRH 227

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
              LS +IPI I+F A+GV SD+EIV +I     +  ++     S+ +   K   F +   
Sbjct: 228  NTLSEDIPIVIIFKAMGVESDQEIVQMIG---TEEHVMAAFGPSLEEC-QKAQIFTQ-MQ 282

Query: 320  ALKYVDKLIKGTTF----PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGR 375
            ALKY+   ++        P     EE     L  S   T    +   +  KC+  A   R
Sbjct: 283  ALKYIGNKVRRQRMWGGGPKKTKIEEARE--LLASTILTHVPVKEFNFRAKCIYTAVMVR 340

Query: 376  R--------KCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR- 426
            R        K D+RD + NKRLELAG+LL    +         M K   + +   R  + 
Sbjct: 341  RVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQF 400

Query: 427  PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
             +  ++    +TNG+  A STG WS    + +R  G+   L R + +  L  + R   Q 
Sbjct: 401  DVVKHMRQDQITNGMVNAISTGNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQF 459

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSG 545
            + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + + PI +   N G
Sbjct: 460  EKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLG 519

Query: 546  MEKL----ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
            +E +     ++ SY     F VF++G+ +GV +D    V+  R  RR   +   V I  +
Sbjct: 520  VEDVNLLCGEELSYP--NVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTN 577

Query: 602  ELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHGIIELVGTEE 655
                 V I  D GR+ RP ++V+          ++ L      F+  L   ++E +   E
Sbjct: 578  LTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNE 637

Query: 656  EEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQK 715
            E DC  A     + KD         TH E++   LLG+  G+IP+ +H+ + R  YQ   
Sbjct: 638  ENDCNIALYEHTINKDT--------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-A 688

Query: 716  HSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQ 775
               QA+G    N   R+DTL + L YPQ+P+ +T   +           ++   +L  GQ
Sbjct: 689  MGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIE-----------LIEFEKLPAGQ 737

Query: 776  NAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF 835
            NA VAV  + GY+ ED+LV+N+ASL+RG  R    ++ K  +     Q   +    M++ 
Sbjct: 738  NATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLD- 796

Query: 836  GKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA----------------DHSI 879
               +  I R + LD DG    G  +++  +++ K   +                  D  I
Sbjct: 797  AATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPI 856

Query: 880  KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENF 939
              K      ++KV++SSN +      + LRQ R P +GDKFSS HGQKGV G +  QE+ 
Sbjct: 857  TYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDM 916

Query: 940  PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVD 999
            PF   GI PDI++NPH FPSR T G+L+E   GK       G+  G   Y T F    V 
Sbjct: 917  PFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKA------GVLDGRFHYGTAFGGSKVK 970

Query: 1000 AITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHP 1059
             + E L R G++  G + +  G TGE + + I+ GP +YQ+L HM  DK+  R  GP   
Sbjct: 971  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030

Query: 1060 LTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVI 1119
            LTRQP   R R GG++ GEMERDCLI +GA+  L ERL   SD++++ +C +C       
Sbjct: 1031 LTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQC------- 1083

Query: 1120 QRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
                  G      +C  C S   +    +PY  KLL QEL SM I
Sbjct: 1084 ------GLLGYSGWCHFCKSSCHVSSLRIPYACKLLFQELQSMNI 1122


>gi|85083820|ref|XP_957195.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Neurospora
            crassa OR74A]
 gi|7800864|emb|CAB91222.1| probable DNA-directed RNA polymerase III second-largest chain
            [Neurospora crassa]
 gi|28918282|gb|EAA27959.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Neurospora
            crassa OR74A]
          Length = 1155

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 377/1213 (31%), Positives = 564/1213 (46%), Gaps = 170/1213 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW-RYASMRFGQ 90
            +F    GLV   I+SYN F+   ++    +    +V    DP+      W  +  +R G 
Sbjct: 37   AFLKVKGLVKQHIDSYNYFVNEEIKDIVRA--NRVVRSDQDPNF-----WLEFRDIRVGM 89

Query: 91   VTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
             T  +           + + P   RL+++TY++ ++V + +        T DK    R+ 
Sbjct: 90   PTRTED---GEQVQSRNPVTPMECRLRDLTYAAPVEVDIAY--------TRDKNVIVRK- 137

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG------DCDFDHGGYFIIKGAEKV 204
                        NI + RIPVM+KS  C++ G          +C  D GGYF+I G EKV
Sbjct: 138  ------------NIPLCRIPVMLKSAKCYLNGATNAQMEVFNECPLDPGGYFVIGGTEKV 185

Query: 205  FVAQEQICLKRLWVSNS------MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLS 258
             + QEQ+   R+ V         M    +   E K    +V          +K    VL 
Sbjct: 186  ILIQEQLSKNRIIVEADEKTGGVMASVTSSTHERKSKTYVV----------LKKDRIVLQ 235

Query: 259  VYFLSTEIPIWILFFALGVSSDKEIVNLI---DFTCEDCSILNILFASIHDADNKCDEFR 315
               LS  IPI I+  A G  SD +I+ L+   D   +D  ++N       D   +   + 
Sbjct: 236  HNTLSEPIPIVIVLKAFGGLSDNDIIELVCGGDARYQDDFLINF------DEAGRAGVYT 289

Query: 316  KGRNALKYVDKLIKGT-------TFPPGESTEECMNTYL-FPSLHGTKQ------KARFL 361
            + + AL+YV   +K           P     EE ++        H T +      KA ++
Sbjct: 290  Q-QQALEYVGARVKMGGNRPKFGAAPRRNHAEEGLDALANLVIAHVTVEGLDFYPKAVYI 348

Query: 362  GYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKR 410
              MV+ +L A    +  D+RD   NKRLELAG+L+             ++K +I +  K+
Sbjct: 349  AMMVRRVLMAAQNPKLVDDRDFVGNKRLELAGQLISLLFEDLFKKFISDVKYNIDNFFKK 408

Query: 411  MAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRA 470
              +    D +G           +   +++GL+RA  +G W+       R +GI   L R 
Sbjct: 409  PNRTSTYDPHG-------AIMANGHYISHGLNRAIQSGNWTVKRFNMNR-AGITHVLSRL 460

Query: 471  NPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVS 530
            + +  L  + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++
Sbjct: 461  SYIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCTSDTPEGEACGLVKNLALMTHIT 520

Query: 531  TSILEPIFEQLFNSGMEKLADDASYS-----LGGKFKVFVDGDWIGVCKDSLSFVSELRR 585
            T++ E   +++  +  E +     Y+       G + + ++G    V ++   F +  R 
Sbjct: 521  TNVPEEPVKKMIFAADESVGPIREYTGTEMHSKGSYIIHLNGTPFAVTREPKRFAARFRT 580

Query: 586  KRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYT 638
             RRR  +   V I  +E  S V I  D GRI RP ++V+N GK       +K L+    T
Sbjct: 581  LRRRGWVSPFVSIHINEHFSAVHIATDEGRICRPYIIVKN-GKSMLKAEHLKMLQLGQAT 639

Query: 639  FQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGII 698
            F   L  G++E +   EE D   A          ED+     TH E++   +LG   G+I
Sbjct: 640  FDTFLTSGVVEYLDVNEENDTLVALQ--------EDQITNSTTHMEIEPFTILGAVAGLI 691

Query: 699  PFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKP 758
            PF +H+ + R  YQ      QAIG    N   R+DTL + L YPQRP+  T     +   
Sbjct: 692  PFPHHNQSPRNTYQC-AMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVITKTIQLI--- 747

Query: 759  GYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVD 818
               H   LP      GQNA V V  + GY+ ED+LV+N+ASL+RG  R +  R Y AE+ 
Sbjct: 748  ---HYDKLPA-----GQNATVVVMSYSGYDIEDALVLNKASLDRGFGRCQVFRKYTAELQ 799

Query: 819  NKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVI----------- 867
                  + R    M +  +    I +   LD DG   +G+ ++SG  +I           
Sbjct: 800  GYTNGRRDRVGGIMKD--EDDKPIVKHAILDADGLAQVGSKVESGQTMIKKETPLDQIST 857

Query: 868  GKYADSGADH----SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSM 923
            G   D G+D     S   + ++  ++ KV++S N+       V  RQ R P LGDKFSS 
Sbjct: 858  GIAGDRGSDDYRDASTNYRISDPAIIDKVMISVNERENKLIKVQTRQTRRPELGDKFSSR 917

Query: 924  HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGIC 983
            HGQKGV+G + ++E+ PF+ +G+ PDI++NPH FPSR T G+L E   GK        + 
Sbjct: 918  HGQKGVVGIIVNEEDMPFSDKGLRPDIIMNPHGFPSRMTVGKLFECLTGKA------SVI 971

Query: 984  SGLKRYA--TPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRL 1041
            +G K Y     F +  V+++ + L   GFS  G +    G TGE + + I+ GP FYQRL
Sbjct: 972  AGEKDYGFGDAFRSHPVESMGQALIDHGFSWEGKDYFTSGITGEPMEAYIYNGPIFYQRL 1031

Query: 1042 IHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLS 1101
             HM +DK+  R+ GP   LTRQP   R R GG++ GEMERDCLIA+GA+  L ERL   S
Sbjct: 1032 KHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMISS 1091

Query: 1102 DSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFS 1161
            D  ++ +C++C            G    +G YC  C S  ++ +  +PY  KLL QEL S
Sbjct: 1092 DGTELDVCQEC------------GLFGYKG-YCNACKSTRNVTQMTMPYACKLLVQELIS 1138

Query: 1162 M--GITLKFDTEF 1172
            M  G+ LK + EF
Sbjct: 1139 MNVGVKLKLEDEF 1151


>gi|321471157|gb|EFX82130.1| hypothetical protein DAPPUDRAFT_316708 [Daphnia pulex]
          Length = 1135

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 369/1209 (30%), Positives = 559/1209 (46%), Gaps = 165/1209 (13%)

Query: 28   KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMR 87
            K   +F    GLV   I+SYN FI   ++K   +  E ++    DP+           ++
Sbjct: 27   KLVPAFLKTKGLVKQHIDSYNYFINVEIKKIVKA-NEKVISFA-DPT---------FYLK 75

Query: 88   FGQVTLDKPSFFAGNGGDEHD---MFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKF 144
            +  + + KP        D H      P   RL++MTYS+ + V +++    Q+RV  +  
Sbjct: 76   YLDIHVGKPDSIE----DMHHSRLTTPHECRLRDMTYSAPVTVDIEY-TRGQQRVVRN-- 128

Query: 145  KTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFII 198
                               I IGR+P+M++S  C + G+      +K +C +D GGYFI+
Sbjct: 129  ------------------GIAIGRMPIMLRSSNCTLAGILPAEMAKKNECPYDCGGYFIV 170

Query: 199  KGAEKVFVAQEQICLKRLWVSN----SMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGE 254
            +G EKV + QEQ+   R+ V      +M   V   +   + R  V +           G+
Sbjct: 171  RGNEKVILIQEQMSKNRMIVEQDRKGNMSCQVTSSTHGTKTRTNVIM---------NKGK 221

Query: 255  KVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEF 314
              L       +IP+ I F A+G+ SD+EIV +I     D  ++     S+ +   +   F
Sbjct: 222  YYLKQNSFQDDIPVVIAFKAMGIVSDQEIVQMIG---TDDHVMTSFAPSLEEC-VRASIF 277

Query: 315  RKGRNALKYVDKLIKGTTF-------PPGESTEECMNTYL--FPSLH-GTKQKARFLGYM 364
             + + AL ++ K ++   F       P  E+ E    T L   P L+   K KA +L  M
Sbjct: 278  TQ-QQALNHLGKKLRQKRFFGGPKKTPLDEAREALAETVLAHVPVLNFNFKAKAMYLALM 336

Query: 365  VKCLLQAYSGRRKCDNRDDFRNKRLELAGELLER-----------ELKVHIAHARKRMAK 413
            ++ ++QA       D+RD + NKR ELAG L+             ELK  IA       K
Sbjct: 337  IRRVIQAERDPTSVDDRDYYGNKRCELAGSLISLLFEDLFKRMNFELK-SIADKNIPKVK 395

Query: 414  ALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPL 473
            A Q D+           ++    LT GL  A +TG W+    R ER  G+   L R + +
Sbjct: 396  AAQFDVIK---------HIRTDTLTLGLENAIATGNWTIKRFRMER-QGVTQMLCRLSYI 445

Query: 474  QTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLVSTS 532
              L  + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL + T + + +
Sbjct: 446  SGLGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEGCGLVKNLALMTHITTEA 505

Query: 533  ILEPIFEQLFNSGME--KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRK 590
              EPI +   N G+E   L      S    + VF++G+ +G+ KD L  +   +  RR  
Sbjct: 506  EEEPIIKIAQNMGVEDINLFSGEEISDPSIYTVFLNGNILGLVKDYLRLIRYFKLARRHG 565

Query: 591  ELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE------NMGKIKSLEGKNYTFQALLD 644
             +   V I    L   V I  D+GR+ RP ++V           ++ L     TF+  + 
Sbjct: 566  FINAFVSIYPHFLTRSVYISCDSGRLCRPYIIVRQGRPAVTEHHMQELADSFRTFEDFIH 625

Query: 645  HGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHD 704
             G++E +   EE D      I     DI ++     TH E++   LLG+  G+IP+ +H+
Sbjct: 626  DGLVEYLDVNEENDS----NIAVYESDINEET----THLEIEPFTLLGVCAGLIPYPHHN 677

Query: 705  HARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNH 764
             + R  YQ      QA+G    N   R+D L + L YP +P+ +T   +           
Sbjct: 678  QSPRNTYQC-AMGKQAMGTIACNQRNRIDGLLYNLVYPHKPMVKTRTIE----------- 725

Query: 765  ILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQV 824
            ++    +  GQNA+VAV  + G++ ED+ V+N+ASL+RG  R    ++ K  +       
Sbjct: 726  MVNFENIPAGQNAMVAVMSYSGFDIEDATVLNKASLDRGYGRCIVYKNAKCVLKRYNNAT 785

Query: 825  KRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA--------- 875
              R +  M++    +    + + +D DGF  +G  +Q   ++I K   +           
Sbjct: 786  SDRVNGPMID-PVTKKPAWKHEIIDIDGFACVGQPVQPKQVLINKIMPTVPAVAVTPGVP 844

Query: 876  ----------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHG 925
                      D  I  K      V+KV+ SSN +  N   + LRQ R P +GDKFSS HG
Sbjct: 845  AAAAPLPEYRDVPITYKGPIPSYVEKVMFSSNAEEANIIKIQLRQTRRPEIGDKFSSRHG 904

Query: 926  QKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSG 985
            QKGV   +  QE+ PFT  GI PD+++NPH FPSR T G+L+E   GK       G+  G
Sbjct: 905  QKGVTALVAEQEDLPFTELGICPDVIMNPHGFPSRMTVGKLIELLAGKA------GLMEG 958

Query: 986  LKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMS 1045
               Y T F    V  ++E+L + GF+  G E +  G TGE + + I+ GP +YQ+L HM 
Sbjct: 959  KFHYGTAFGGSKVQDVSEELMKHGFNYQGKECMTSGTTGEQLTAYIYFGPVYYQKLKHMV 1018

Query: 1046 EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQ 1105
             DK+  R+ GP   LTRQP   R R GG++ GEMERDCLIA+G++  + ERL   SD++ 
Sbjct: 1019 MDKMHARSQGPRAILTRQPTEGRARDGGLRLGEMERDCLIAYGSSMLILERLMISSDAFN 1078

Query: 1106 MHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
            + +C +C  +                 +C  C S   +    +PY  KLL QEL SM I 
Sbjct: 1079 VDVCNQCGLIGYF-------------GWCHFCRSSASVSSLRIPYACKLLFQELQSMNIA 1125

Query: 1166 --LKFDTEF 1172
              LK D  F
Sbjct: 1126 PRLKLDKYF 1134


>gi|156059482|ref|XP_001595664.1| hypothetical protein SS1G_03753 [Sclerotinia sclerotiorum 1980]
 gi|154701540|gb|EDO01279.1| hypothetical protein SS1G_03753 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1230

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 361/1215 (29%), Positives = 565/1215 (46%), Gaps = 162/1215 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW-RYASMRFGQ 90
            +F    GLV   I+S+N F+++ ++    +      E   DP       W  Y  +R G+
Sbjct: 96   AFLKVKGLVKQHIDSFNYFVEHEIKDIVKANKRVTSE--VDPKF-----WLEYTDIRVGE 148

Query: 91   VTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
                       +   ++++ P   RL++MTY++ ++V +             K+  GR  
Sbjct: 149  ----PERMDYDDRKPQNEITPNECRLRDMTYAAPIRVDI-------------KYMRGRTI 191

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKV 204
              +K        NI IGR+P+M+KS  C + G          +C  D GGYF++ G EKV
Sbjct: 192  VARK--------NIAIGRMPIMLKSSKCRLNGKNDRQMAHMNECALDPGGYFVVNGTEKV 243

Query: 205  FVAQEQICLKRLWVSNSMGWTVAYKSENKRN---RLIVRLVDMSK---------FEDIKG 252
             + QEQ+   R+ +       +   S  + +   R  V L+ ++          +  +K 
Sbjct: 244  ILVQEQLSKNRVIIEADPKKGIVSASVTRSDCISRTSVSLLTLNSSTHERKSKSYVMLKK 303

Query: 253  GEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLI---DFTCEDCSILNILFASIHDADN 309
                L    L   +PI I+  A+G+ SD E++ L+   D   +D   +N   A+      
Sbjct: 304  ERISLQHNILQEALPIVIVLKAMGIQSDHELLLLVAGSDERYQDEFSVNFEEATKLGVHT 363

Query: 310  KCDEFRKGRNALKYVDKLIK--GTTFPPG-------------ESTEECMNTYLFPSLHGT 354
            +         AL+Y+   +K       PG             E+    + T++       
Sbjct: 364  Q-------HQALEYIGARVKMGSRARAPGGGPQRRNYIGDALEALANIIITHVPVVGLDF 416

Query: 355  KQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLE-----------RELKVH 403
            + KA ++ +MV+ +L A    +  D+RD   NKRLELAG+LL             +LK++
Sbjct: 417  RPKALYICFMVRRVLMAMVNPKLVDDRDYVGNKRLELAGQLLSLLFEDLFKKFNTDLKMN 476

Query: 404  IAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGI 463
            I    K+  + ++ D Y              + +T G++RA STG WS    + ER +G+
Sbjct: 477  IDKVLKKPNRGMEFDAYNHMQSH-------GNYITIGMNRAISTGNWSLKRFKMER-AGV 528

Query: 464  VANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNL 523
               L R + +  L  + R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL
Sbjct: 529  THVLSRLSYISALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNL 588

Query: 524  GV-TGLVSTSILEPIFEQLFNSGMEKLADDASYSL--GGKFKVFVDGDWIGVCKDSLSFV 580
             + T + +    EP+ +  F  G E +   +   +   G + +FV+G  + + +    F+
Sbjct: 589  ALMTHITTYDDEEPVKKLTFVLGAEDIVSMSGKEIYEKGAYVIFVNGTPLALTRQPKKFL 648

Query: 581  SELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEG 634
            +  R+ RR   +   + I  +   + V I  D GRI RPL++VEN         ++ L  
Sbjct: 649  NSFRKFRRMGRISEYISIFINHHSTSVHIATDEGRICRPLIIVENQKPKVTKRHLEELRK 708

Query: 635  KNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLS 694
                F   L  G++E V   EE D   A    Y+ +          TH E++   +LG  
Sbjct: 709  GTMDFDDFLYKGLLEYVDCNEENDSNIAIRENYINEAT--------THLEIEPFTVLGAV 760

Query: 695  CGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDC 754
             G+IP+ +H+ + R  YQ      QAIG    N   R+DTL + + YPQ+P+ +T   + 
Sbjct: 761  AGLIPYPHHNQSPRNTYQCA-MGKQAIGAIAYNQFSRIDTLLYLMVYPQQPMVKTRTIE- 818

Query: 755  LGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYK 814
                      ++   +L  GQNA VAV    GY+ ED+LV+N+AS +RG  R +  R Y 
Sbjct: 819  ----------LIKYDKLPAGQNATVAVMSFSGYDIEDALVLNKASCDRGFGRCQVFRKYS 868

Query: 815  AEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSG 874
             ++     + + R +D  V  G+    I +   L  DG   +G  + +G+  + K + S 
Sbjct: 869  TQLKKYPNRSQDRIADRQV--GENGKPIAKHRILGVDGIAMVGERINAGETYLNKESPSN 926

Query: 875  ADHS---------------IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDK 919
             + S               +  K  +   + KV+LS  ++      V  RQ R P LGDK
Sbjct: 927  PNSSGMGNDYGSNDMKPAPMGYKLHDYAYIDKVMLSQTENESTVLKVQTRQTRRPELGDK 986

Query: 920  FSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALG 979
            FSS HGQKGV+G + +QE+ PF   G+ PDI++NPH FPSR T G++LE   GK      
Sbjct: 987  FSSRHGQKGVVGIIVNQEDMPFADSGVTPDIIMNPHGFPSRMTVGKMLELLSGKA----- 1041

Query: 980  KGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQ 1039
             G+ +G   Y T F   +VD + + L   GFS  G + +  G TGE + + +F GP +YQ
Sbjct: 1042 -GVVNGSLEYGTCFGGSNVDVMGKILIDKGFSYSGKDFVTSGITGESLPAYVFFGPIYYQ 1100

Query: 1040 RLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFT 1099
            +L HM +DK+  R+ GP   LTRQP   R R GG++ GEMERDCLIA+GA+  L ERL  
Sbjct: 1101 KLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLML 1160

Query: 1100 LSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQEL 1159
             SD++++ IC  C             G      +C+ C S   +    +PY AKLL QE+
Sbjct: 1161 SSDAHEVDICETC-------------GLMGYSGWCQTCKSSKGVSTMTMPYAAKLLVQEM 1207

Query: 1160 FSMGIT--LKFDTEF 1172
             SM +   LK + EF
Sbjct: 1208 LSMNVLVRLKLEDEF 1222


>gi|336468399|gb|EGO56562.1| hypothetical protein NEUTE1DRAFT_83883 [Neurospora tetrasperma FGSC
            2508]
 gi|350289345|gb|EGZ70570.1| putative DNA-directed RNA polymerase III second-largest chain
            [Neurospora tetrasperma FGSC 2509]
          Length = 1155

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 377/1213 (31%), Positives = 564/1213 (46%), Gaps = 170/1213 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW-RYASMRFGQ 90
            +F    GLV   I+SYN F+   ++    +    +V    DP+      W  +  +R G 
Sbjct: 37   AFLKVKGLVKQHIDSYNYFVNEEIKDIVRA--NRVVRSDQDPNF-----WLEFRDIRVGM 89

Query: 91   VTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
             T  +           + + P   RL+++TY++ ++V + +        T DK    R+ 
Sbjct: 90   PTRTED---GEQVQSRNPVTPMECRLRDLTYAAPVEVDIAY--------TRDKNVIVRK- 137

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG------DCDFDHGGYFIIKGAEKV 204
                        NI + RIPVM+KS  C++ G          +C  D GGYF+I G EKV
Sbjct: 138  ------------NIPLCRIPVMLKSAKCYLNGATNAQMEVFNECPLDPGGYFVIGGTEKV 185

Query: 205  FVAQEQICLKRLWVSNS------MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLS 258
             + QEQ+   R+ V         M    +   E K    +V          +K    VL 
Sbjct: 186  ILIQEQLSKNRIIVEADEKTGGVMASVTSSTHERKSKTYVV----------LKKDRIVLQ 235

Query: 259  VYFLSTEIPIWILFFALGVSSDKEIVNLI---DFTCEDCSILNILFASIHDADNKCDEFR 315
               LS  IPI I+  A G  SD +I+ L+   D   +D  ++N       D   +   + 
Sbjct: 236  HNTLSEPIPIVIVLKAFGGLSDNDIIELVCGGDARYQDDFLINF------DEAGRAGVYT 289

Query: 316  KGRNALKYVDKLIKGT-------TFPPGESTEECMNTYL-FPSLHGTKQ------KARFL 361
            + + AL+YV   +K           P     EE ++        H T +      KA ++
Sbjct: 290  Q-QQALEYVGARVKMGGNRPKFGAAPRRNHAEEGLDALANLVIAHVTVEGLDFYPKAVYI 348

Query: 362  GYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKR 410
              MV+ +L A    +  D+RD   NKRLELAG+L+             ++K +I +  K+
Sbjct: 349  AMMVRRVLMAAQNPKLVDDRDFVGNKRLELAGQLISLLFEDLFKKFISDVKYNIDNFFKK 408

Query: 411  MAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRA 470
              +    D +G           +   +++GL+RA  +G W+       R +GI   L R 
Sbjct: 409  PNRTSTYDPHG-------AIMANGHYISHGLNRAIQSGNWTVKRFNMNR-AGITHVLSRL 460

Query: 471  NPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVS 530
            + +  L  + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++
Sbjct: 461  SYIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCTSDTPEGEACGLVKNLALMTHIT 520

Query: 531  TSILEPIFEQLFNSGMEKLADDASYS-----LGGKFKVFVDGDWIGVCKDSLSFVSELRR 585
            T++ E   +++  +  E +     Y+       G + + ++G    V ++   F +  R 
Sbjct: 521  TNVPEEPVKKMIFAADESVGPIREYTGTEMHSKGSYIIHLNGTPFAVTREPKRFAARFRT 580

Query: 586  KRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYT 638
             RRR  +   V I  +E  S V I  D GRI RP ++V+N GK       +K L+    T
Sbjct: 581  LRRRGWVSPFVSIHINEHFSAVHIATDEGRICRPYIIVKN-GKSMLKAEHLKMLQLGQAT 639

Query: 639  FQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGII 698
            F   L  G++E +   EE D   A          ED+     TH E++   +LG   G+I
Sbjct: 640  FDTFLTSGVVEYLDVNEENDTLVALQ--------EDQITNSTTHMEIEPFTILGAVAGLI 691

Query: 699  PFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKP 758
            PF +H+ + R  YQ      QAIG    N   R+DTL + L YPQRP+  T     +   
Sbjct: 692  PFPHHNQSPRNTYQC-AMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVITKTIQLI--- 747

Query: 759  GYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVD 818
               H   LP      GQNA V V  + GY+ ED+LV+N+ASL+RG  R +  R Y AE+ 
Sbjct: 748  ---HYDKLPA-----GQNATVVVMSYSGYDIEDALVLNKASLDRGFGRCQVFRKYTAELQ 799

Query: 819  NKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVI----------- 867
                  + R    M +  +    I +   LD DG   +G+ ++SG  +I           
Sbjct: 800  GYTNGRRDRVGGIMKD--EDDKPIVKHAILDADGLAQVGSKVESGQTMIKKETPLDQIST 857

Query: 868  GKYADSGADH----SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSM 923
            G   D G+D     S   + ++  ++ KV++S N+       V  RQ R P LGDKFSS 
Sbjct: 858  GIAGDRGSDDYRDASTNYRISDPAIIDKVMISVNERENKLIKVQTRQTRRPELGDKFSSR 917

Query: 924  HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGIC 983
            HGQKGV+G + ++E+ PF+ +G+ PDI++NPH FPSR T G+L E   GK        + 
Sbjct: 918  HGQKGVVGIIVNEEDMPFSDKGLRPDIIMNPHGFPSRMTVGKLFECLTGKA------SVI 971

Query: 984  SGLKRYA--TPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRL 1041
            +G K Y     F +  V+++ + L   GFS  G +    G TGE + + I+ GP FYQRL
Sbjct: 972  AGEKDYGFGDAFRSHPVESMGQALIDHGFSWEGKDYFTSGITGEPMEAYIYNGPIFYQRL 1031

Query: 1042 IHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLS 1101
             HM +DK+  R+ GP   LTRQP   R R GG++ GEMERDCLIA+GA+  L ERL   S
Sbjct: 1032 KHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMISS 1091

Query: 1102 DSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFS 1161
            D  ++ +C++C            G    +G YC  C S  ++ +  +PY  KLL QEL S
Sbjct: 1092 DGTELDVCQEC------------GLFGYKG-YCNACKSTRNVTQMTMPYACKLLVQELIS 1138

Query: 1162 M--GITLKFDTEF 1172
            M  G+ LK + EF
Sbjct: 1139 MNVGVKLKLEDEF 1151


>gi|242006406|ref|XP_002424041.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
            putative [Pediculus humanus corporis]
 gi|212507347|gb|EEB11303.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
            putative [Pediculus humanus corporis]
          Length = 1137

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 381/1219 (31%), Positives = 559/1219 (45%), Gaps = 202/1219 (16%)

Query: 28   KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDS--FGETIVEPGYDPSKKGEGEWRYAS 85
            K    F    GLV    +S+N FIK  ++K  ++  +  + V+P +              
Sbjct: 29   KLVPEFLKIKGLVKQHTDSFNYFIKVDIKKIVEANQYVRSDVDPNF-------------Y 75

Query: 86   MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
            +++  V +  P    G         P+  RL++MTYS+ + V ++   YT+         
Sbjct: 76   LKYLDVEVGVPEIEEGLDVKRAST-PQECRLRDMTYSAPITVTIE---YTR--------- 122

Query: 146  TGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIK 199
             G E+ I+K+        +IIGRIP+M++S  C + G ++       +C  D GGYFI+K
Sbjct: 123  -GNERIIKKD--------LIIGRIPIMLQSANCVLYGKDEYELSKLNECPLDPGGYFIVK 173

Query: 200  GAEKVFVAQEQICLKRLWVS-----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGE 254
            G E+V + +EQ+    L V      N     ++   E K    I+          IK  +
Sbjct: 174  GQERVILIREQLLKNSLVVEKDSKGNPCAHVMSSTHEKKSKTNII----------IKKDK 223

Query: 255  KVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDF----------TCEDCSILNILFASI 304
              L     S +IP+ +++   GV SD E    +            + E+C  LNI     
Sbjct: 224  FYLRHNAFSDDIPLAVIYKGFGVESDIEFFMSVGIEQEYHEKLIPSMEECHKLNI----- 278

Query: 305  HDADNKCDEFRKGRNALKYVDKLIKGTTFPPG----------ESTEECMNTYL----FPS 350
                  C + +    AL+Y+    K     PG          ++ +   NT L       
Sbjct: 279  ------CTQTQ----ALRYIGNKTKVKRSLPGSGGKPKNVVDDAGDILANTILAHVDVLD 328

Query: 351  LHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL-----------ERE 399
                 +K ++LG MV+ +LQA +  R   + D + NKRLELAG +L             E
Sbjct: 329  FRCMCEKTQYLGLMVRRILQAETDPRFYTDLDHYGNKRLELAGAMLGLLFEDFLKRYNLE 388

Query: 400  LKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTE- 458
            LK+ IA       KA Q D         I  +L    +TNG S A STG W+   KR   
Sbjct: 389  LKM-IADKMIPKIKAAQFD---------IVKHLRQDFITNGFSNAISTGNWT--IKRFRM 436

Query: 459  RISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCG 518
               G+   L R + +     + R     + T KV   R  H + WG +C   TP+GE CG
Sbjct: 437  HTQGVTQVLSRLSYISAFGMMTRVNSHFEKTRKVSGPRSLHATQWGMLCPSDTPEGEACG 496

Query: 519  LVKNLGVTGLVSTSILEPIFEQL---------FNSGMEK-LADDASYSLGGKFKVFVDGD 568
            LVKNL +   +ST   E   +Q+             ME+ LA D        F VF++G 
Sbjct: 497  LVKNLALMCHISTLSSELPIKQIAQLCGIIPPMRMNMEQILAPDT-------FMVFLNGS 549

Query: 569  WIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN--- 625
             +G+  +      +LR+ RR  +L   V I    L   V IF D+GR+ RP +++EN   
Sbjct: 550  LLGITYEPKKLCKKLRKIRRSGKLNPFVSISLHALHRTVYIFSDSGRLCRPYIIIENGVP 609

Query: 626  ---MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTH 682
                  +  LE K   F   LD G+IE +   EE D   A       KDI  K     TH
Sbjct: 610  LITKSDLNDLERKFKKFIDFLDDGVIEYMDVNEENDSLIAL----YEKDITPKH----TH 661

Query: 683  CELDMSFLLGLSCGIIPFANHDHARRVLYQSQ--KHSSQAIGFPTTNPSIRVDTLSHQLF 740
             E+    LLG+   IIP+ +++ + R  YQ    K +  AIG+   N   R+DTL + + 
Sbjct: 662  LEIAPFTLLGVCASIIPYPHNNQSPRNTYQCAMGKQAMGAIGYNQEN---RIDTLLYNMV 718

Query: 741  YPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASL 800
            Y Q+P+  T       KP    N+     +L  GQNAIV V  + GY+ ED+L++N+ASL
Sbjct: 719  YTQKPMVIT-------KPMVMVNY----DKLPAGQNAIVCVMSYSGYDIEDALIINKASL 767

Query: 801  ERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANL 860
            ERG  R +  R+ K  +         R    +V+  + +  + +   LD DG    G  +
Sbjct: 768  ERGYGRCQVFRNTKCVLKRYADGTSDRIQGPLVD-AETRKPLWKHGVLDTDGIGAPGEKI 826

Query: 861  QSGDIVIGKYADSGADHS--------------IKLKHTERGMVQKVVLSSNDDGKNFSVV 906
             +  ++I K   S ++ S              +  K  E   + KV++S+N D  +   +
Sbjct: 827  LNRQVLINKSVPSRSNTSNVPIFGERDYIDTPVDYKGLEHSYIDKVLISTNSDDDSLIKI 886

Query: 907  SLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQL 966
             LRQ R P +GDKFSS HGQKGV+G +  QEN PF   GI PD+++NPH FPSR T G+L
Sbjct: 887  KLRQTRIPEIGDKFSSRHGQKGVVGLIVEQENMPFNESGICPDVIMNPHGFPSRMTVGKL 946

Query: 967  LEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEM 1026
            +E   GK       G+ +G   Y T F   +V  + E+L +  F+  G + LY G TGE 
Sbjct: 947  IELLAGKA------GVVTGKHHYGTAFGGSTVSEVQEELVKNKFNYEGKDILYSGITGEP 1000

Query: 1027 VRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIA 1086
            +   ++ GP FYQRL HM +DK+  R  GP   LTRQP   R   GG++ GEMERDCLIA
Sbjct: 1001 MEVYVYSGPVFYQRLKHMVQDKIHARARGPRAVLTRQPTEGRAADGGLRLGEMERDCLIA 1060

Query: 1087 HGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKA 1146
            +GA++ + ERL   SD++Q  +C +C  +A                +C  C S  +I   
Sbjct: 1061 YGASSMISERLMISSDAFQCDVCNECGLIA-------------YSKWCHGCKSSKEISTI 1107

Query: 1147 NVPYGAKLLCQELFSMGIT 1165
             +PY  KLL QEL SM I 
Sbjct: 1108 KLPYATKLLFQELRSMNIV 1126


>gi|401889092|gb|EJT53032.1| DNA-directed RNA polymerase [Trichosporon asahii var. asahii CBS
            2479]
          Length = 1213

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 367/1192 (30%), Positives = 535/1192 (44%), Gaps = 146/1192 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETI--VEPGYDPSKKGEGEWRYASMRFG 89
            +F    GLV   ++S+N F+   ++    +    +    P Y          RY  +R G
Sbjct: 113  AFLKVKGLVKQHLDSFNYFVHTDIKAILHANALVVSDANPRY--------YIRYTDIRIG 164

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
            +            G     + P   RL + TYS  + V +++                 E
Sbjct: 165  R------PLRKEVGSSNTRLTPMECRLTDNTYSGGIYVDIEYT---------------HE 203

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
              I+K+        I IG +P+M++SDLC + G         G+C  D GGYF++KG EK
Sbjct: 204  DKIRKQ------QGIHIGSLPIMLRSDLCHLAGKNDLELARMGECPLDPGGYFVVKGTEK 257

Query: 204  VFVAQEQICLKRLWVSN--SMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYF 261
            V + QEQ+   R+ V        T A  + +  +R++        +   K     L    
Sbjct: 258  VILVQEQLSKNRIIVMTDPKKDVTTAEVTSSTHDRVV------KTYVTTKASRLYLRHSS 311

Query: 262  LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNAL 321
                IPI I   A+GV+SDKEI+ L+   C         F    +   +   + + R AL
Sbjct: 312  FKEPIPIVIALKAMGVTSDKEILQLV---CGPDEKYQEAFGMSLEEAARLRVYTR-REAL 367

Query: 322  KYVDKLIKGTTFPPGESTEECMNTYLFPSLHGT------------------KQKARFLGY 363
            +++   +     P  E  +  +   L P+                      + KA +L  
Sbjct: 368  EWIGARVS----PTQEKEDRSLGHKLTPTDMAMQALAAMVLGHVPVRDMNFRPKAIYLAT 423

Query: 364  MVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDL 419
            M + +L A       D+RD   NKRLELAG+LL    E   K   +  +KRM K L++  
Sbjct: 424  MSRRVLAAMLDENMVDDRDYVGNKRLELAGQLLSLLFEDSFKTFNSDLKKRMDKILEKKT 483

Query: 420  -YGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVD 478
              G      +       I+T+   R+ STG WS      ER +G+   L R + +  L  
Sbjct: 484  RAGPFDASTLVRTGGGDIITSAFVRSISTGNWSLKRFHVER-AGVTHVLSRLSFIAALGM 542

Query: 479  LRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PI 537
            + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + E P+
Sbjct: 543  MTRITSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVPEDPL 602

Query: 538  FEQLFNSGME--KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQ 595
             +  F  G E   LA        G   V V+G+ IGV      FV   R+ RR       
Sbjct: 603  IKLAFMLGAEDISLATGNELYRDGVHLVQVNGNLIGVTALPRKFVRTFRKLRRSGRTSEF 662

Query: 596  VEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIE 649
            V I  +  Q  + I  D GRI RPL++VEN         ++ L+    TF   L  G++E
Sbjct: 663  VSIYINHHQRVIYIASDGGRICRPLIIVENGRPRVTSEHMQLLKAGKVTFDHFLRSGLVE 722

Query: 650  LVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRV 709
             +   EE D   A    Y  +  ED      TH E++   +LG   G+IP+ +H+ + R 
Sbjct: 723  YLDVNEENDSFIAC---YESEITEDT-----THLEIEPFTILGAVAGLIPYPHHNQSPRN 774

Query: 710  LYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRP 769
             YQ      QAIG    N   R+DTL + + YPQ+P+ +T   + +G             
Sbjct: 775  TYQC-AMGKQAIGAIAYNQLNRIDTLLYLMTYPQQPMVKTKTIELVG-----------YD 822

Query: 770  ELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSS 829
             L  GQNA VAV  + GY+ ED+L++NRAS +RG  R   ++     + +        +S
Sbjct: 823  RLPAGQNATVAVMSYSGYDIEDALIVNRASADRGFGRCHVLKKQTIPIRS----FPNGTS 878

Query: 830  DDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---DSGADHSIKLKHT-- 884
            + +      Q        LD DG    G+ +  GD++  +       G   ++  K T  
Sbjct: 879  ERLAMLPPDQRPETH-SWLDQDGLVAPGSVVSQGDVLAARETPMDTRGPGPTVGFKATPV 937

Query: 885  -----ERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENF 939
                 E   + KV+++  +DG     +  RQ R P LGDKFSS HGQKGV G +  Q++ 
Sbjct: 938  AHKLPEPTNIDKVMVTDTEDGNQLIKILTRQTRRPELGDKFSSRHGQKGVCGLIVPQQDM 997

Query: 940  PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVD 999
            PF  QGI PDI++NPH FPSR T G+++E   GK       G+ +G  +Y T F    V 
Sbjct: 998  PFNDQGICPDIIMNPHGFPSRMTVGKMIELLSGKA------GLMAGKLQYGTAFGGSKVV 1051

Query: 1000 AITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHP 1059
             +++ L  AGFS  G + L  G TGE + + ++ GP +YQ+L HM  DK+  R TGP   
Sbjct: 1052 DMSQILIDAGFSYAGKDTLTSGITGESLETYVYFGPIYYQKLKHMVMDKMHARPTGPRAN 1111

Query: 1060 LTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVI 1119
            LTRQP   R + GG++ GEMERDCLI +GA   L ERL   SD++   +C  C       
Sbjct: 1112 LTRQPTEGRSKDGGLRLGEMERDCLIGYGATQLLLERLMISSDAFDAQVCETC------- 1164

Query: 1120 QRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                  G      +C+ C S   +VK  +PY AKLL QEL  M I  K   E
Sbjct: 1165 ------GMLAYSGWCKGCQSSKAVVKITMPYAAKLLIQELIGMNILPKLVME 1210


>gi|171689286|ref|XP_001909583.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944605|emb|CAP70716.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1160

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 378/1217 (31%), Positives = 567/1217 (46%), Gaps = 179/1217 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW-RYASMRFGQ 90
            +F    GLV   I+SYN F++  ++K  ++    ++    +PS      W  +  +R G+
Sbjct: 39   AFLKVKGLVKQHIDSYNYFVEEDIKKIVEA--NRVIRCDQEPSF-----WLEFTDIRVGK 91

Query: 91   VTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
             T ++ S           + P   RL++ TY++ + V + +                   
Sbjct: 92   PTRNENSQLQWQSSTT--VSPMECRLRDATYAAPVVVDIAYP------------------ 131

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDFDHGGYFIIKGAEKV 204
               K  + +   N+ + RIPVM+KS  C++ G       E  +C  D GGYFI+ G EKV
Sbjct: 132  ---KNGVRNIRKNVQLCRIPVMLKSSKCYLNGANNARMEELNECPLDPGGYFIVGGTEKV 188

Query: 205  FVAQEQICLKRLWVSNS----MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVY 260
             + QEQ+   R+ V       +  +V   +  ++++  V L         K    +L+  
Sbjct: 189  ILIQEQLSKNRVIVEKDDKGGVQASVTSSTHERKSKTYVVL---------KKDRILLTHN 239

Query: 261  FLSTEIPIWILFFALGVSSDKEIVNLI---DFTCEDCSILNILFASIHDADNKCDEFRKG 317
             L   IPI I+  ALG  SD +I+ L+   D   +D  ++N   A+      K   + + 
Sbjct: 240  ILVEAIPIVIVLKALGGLSDYDIMELVAGGDSRYQDDFLINFEDAA------KAGVYTQ- 292

Query: 318  RNALKYVDKLIK-------------GTTFPPGESTEECMNTYLFPSLHGTKQ------KA 358
            + AL+YV   +K             G    P E   + ++  +    H T +      K 
Sbjct: 293  QQALEYVGARVKMGGPKKPSPKFSAGPRRNPIEEGLDALSNLIVA--HVTVKDLDFYPKT 350

Query: 359  RFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLER-----------ELKVHIAHA 407
             ++  MV+ +L A       D+RD   NKRLELAG+LL             +LK ++ H 
Sbjct: 351  IYIAMMVRRILMAVHNPELVDDRDFVGNKRLELAGQLLSLLFEDLLKGFIGQLKANMEHF 410

Query: 408  RKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANL 467
             KR  +    D  G     PI  Y   +++T GL+RA  +G W+       R +G+   L
Sbjct: 411  FKRPNRTSAYDPIG-----PIGSY--GTMITQGLNRAIQSGNWTVKRFGMNR-AGVTHVL 462

Query: 468  GRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTG 527
             R + +  L  + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +  
Sbjct: 463  SRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCTSDTPEGEACGLVKNLALMT 522

Query: 528  LVSTSILEPIFEQLFNSGME--KLADDASYS---LGGKFKVFVDGDWIGVCKDSLSFVSE 582
             ++T   E   ++  ++ +E  +L ++ S +       F + V+G    +  D+ +F   
Sbjct: 523  HITTEAGEEKVKKCVSTLIEGIRLIEECSGTEMHEENAFIIHVNGTPYALTLDAAAFTKR 582

Query: 583  LRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKN 636
             ++ RRR  L   + I      + + I  D GRI RP ++VEN         +  L  K 
Sbjct: 583  FKQFRRRGVLSAFIGIHTSHATASIHIATDEGRICRPYIIVENGKSMLEAAHLDLLRHKK 642

Query: 637  YTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCG 696
             TF+  L  G++E +   EE D   A        DI D+     TH E++   +LG   G
Sbjct: 643  ATFEDFLKKGVLEYLDVNEENDALIAVH----ESDINDQT----THLEIEPFTILGAVAG 694

Query: 697  IIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLG 756
            +IPF +H+ + R  YQ      QAIGF   N   R+DTL + L YPQRP+  T     + 
Sbjct: 695  LIPFPHHNQSPRNTYQC-AMGKQAIGFIAYNQQNRIDTLHYTLVYPQRPMVITKTIQLI- 752

Query: 757  KPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAE 816
                 H   LP      GQNA V V  + GY+ ED+LV+N+AS +RG  R +  + Y  E
Sbjct: 753  -----HYDKLP-----AGQNATVVVMSYSGYDIEDALVLNKASCDRGFGRCQVFKKYTTE 802

Query: 817  VDNKEMQVKRRSSDDMVNFGKIQ-----SKIGRVDSLDDDGFPFIGANLQSGDIVIGK-- 869
            +    +Q   R+ D     G +Q         R   LD+DG    G  ++ GDI+I K  
Sbjct: 803  L----LQYPNRNKD---RLGGVQRDEDGKAKDRHAVLDNDGLATPGMKMKDGDIMIMKET 855

Query: 870  -----YADSGADHS--------IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCL 916
                   + G D          I  K  +  +V KVV+++ + G     V  RQ R P L
Sbjct: 856  PVDQTSTNIGEDRKITEFRPCPISYKIKDPAIVDKVVITTKESGTPLLKVRTRQTRRPEL 915

Query: 917  GDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIA 976
            GDKFSS HGQKGV+G +  QE+ PF+ +G+ PDI++NPH FPSR T G+L E   GK   
Sbjct: 916  GDKFSSRHGQKGVVGIIVDQEDLPFSDKGLTPDIIMNPHGFPSRMTVGKLFECLTGKA-- 973

Query: 977  ALGKGICSGLKRY--ATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIG 1034
                 + +G + Y     F +  V+ + + L   GFS  G +    G TGE   + +F G
Sbjct: 974  ----SVVAGRREYGFGDAFRSHPVEEMGKVLIEHGFSWEGKDYFTSGITGEPHEAYLFNG 1029

Query: 1035 PTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLH 1094
            P FYQRL HM  DK+  R+ GP   LTRQP   R R GG++ GEMERDCLIA+GA+  L 
Sbjct: 1030 PIFYQRLKHMVADKMHSRSRGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLL 1089

Query: 1095 ERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKL 1154
            ERL   SD  ++ +C +C            G    +G YC+ C +  ++ K N+PY AKL
Sbjct: 1090 ERLMYSSDVTKVDVCERC------------GLMGYKG-YCQTCKTTSNVTKMNMPYAAKL 1136

Query: 1155 LCQELFSMGITLKFDTE 1171
            L QEL SM + ++   E
Sbjct: 1137 LLQELISMNVGVRMQLE 1153


>gi|291389954|ref|XP_002711473.1| PREDICTED: DNA-directed RNA polymerase III B [Oryctolagus cuniculus]
          Length = 1133

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 363/1185 (30%), Positives = 555/1185 (46%), Gaps = 146/1185 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYASMRFG 89
            +F    GLV   I+S+N FI   ++K        I++     +   +  W  +Y ++  G
Sbjct: 32   AFLKVKGLVKQHIDSFNYFINVEIKK--------IMKANEKVTSDADPMWYLKYLNIYVG 83

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
               +++ SF          + P   RL++MTYS+ + V +++   +Q+ + +        
Sbjct: 84   LPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEYTRGSQRVIRN-------- 129

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
                          + IGR+P+M++S  C + G       +  +C  D GGYFI+KG EK
Sbjct: 130  -------------ALPIGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEK 176

Query: 204  VFVAQEQICLKRLWVS----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            V + QEQ+   R+ V      ++G +V   +  K++R      +M+    +K G   L  
Sbjct: 177  VILIQEQLSKNRIIVEADRKGTVGASVTSSTHEKKSR-----TNMA----VKQGRFYLRH 227

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
              LS +IPI I+F A+GV SD+EIV +I     +  ++     S+ +   K   F +   
Sbjct: 228  NTLSEDIPIVIIFKAMGVESDQEIVQMIG---TEEHVMAAFGPSLEEC-QKAQIFTQ-MQ 282

Query: 320  ALKYVDKLIKGTTF----PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGR 375
            ALKY+   ++        P     EE     L  S   T    +   +  KC+  A   R
Sbjct: 283  ALKYIGNKVRRQRMWGGGPKKTKIEEARE--LLASTILTHVPVKEFNFRAKCIYTAVMVR 340

Query: 376  R--------KCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR- 426
            R        K D+RD + NKRLELAG+LL    +         M K   + +   R  + 
Sbjct: 341  RVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQF 400

Query: 427  PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
             +  ++    +TNG+  A STG WS    + +R  G+   L R + +  L  + R   Q 
Sbjct: 401  DVVKHMRQDQITNGMVNAISTGNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQF 459

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSG 545
            + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + + PI +   N G
Sbjct: 460  EKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLG 519

Query: 546  MEKL----ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
            +E +     ++ SY     F VF++G+ +GV +D    V+  R  RR   +   V I  +
Sbjct: 520  VEDVNLLCGEELSYP--SVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTN 577

Query: 602  ELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHGIIELVGTEE 655
                 V I  D GR+ RP ++V+          ++ L      F+  L   ++E +   E
Sbjct: 578  LTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNE 637

Query: 656  EEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQK 715
            E DC  A     + KD         TH E++   LLG+  G+IP+ +H+ + R  YQ   
Sbjct: 638  ENDCNIALYEHTINKDT--------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-A 688

Query: 716  HSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQ 775
               QA+G    N   R+DTL + L YPQ+P+ +T   +           ++   +L  GQ
Sbjct: 689  MGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIE-----------LIEFEKLPAGQ 737

Query: 776  NAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF 835
            NA VAV  + GY+ ED+LV+N+ASL+RG  R    ++ K  +     Q   +    M++ 
Sbjct: 738  NATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLD- 796

Query: 836  GKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA----------------DHSI 879
               +  I R + LD DG    G  +++  +++ K   +                  D  I
Sbjct: 797  AATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPI 856

Query: 880  KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENF 939
              K      ++KV++SSN +      + LRQ R P +GDKFSS HGQKGV G +  QE+ 
Sbjct: 857  TYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDM 916

Query: 940  PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVD 999
            PF   GI PDI++NPH FPSR T G+L+E   GK       G+  G   Y T F    V 
Sbjct: 917  PFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKA------GVLDGRFHYGTAFGGSKVK 970

Query: 1000 AITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHP 1059
             + E L R G++  G + +  G TGE + + I+ GP +YQ+L HM  DK+  R  GP   
Sbjct: 971  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030

Query: 1060 LTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVI 1119
            LTRQP   R R GG++ GEMERDCLI +GA+  L ERL   SD++++ +C +C       
Sbjct: 1031 LTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQC------- 1083

Query: 1120 QRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
                  G      +C  C S   +    +PY  KLL QEL SM I
Sbjct: 1084 ------GLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNI 1122


>gi|260807868|ref|XP_002598730.1| hypothetical protein BRAFLDRAFT_282817 [Branchiostoma floridae]
 gi|229284004|gb|EEN54742.1| hypothetical protein BRAFLDRAFT_282817 [Branchiostoma floridae]
          Length = 1137

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 366/1195 (30%), Positives = 564/1195 (47%), Gaps = 146/1195 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+S+N FI   ++K   +  E IV    DP+           +++  +
Sbjct: 24   AFLKVKGLVKQHIDSFNYFINVEIKKIMKA-NEKIVSDA-DPN---------FYLKYLNI 72

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             +  P    G    +  + P   RL++MTYS+ + V +++    Q+ V +          
Sbjct: 73   YVGMPDVEEGFNITK-PIAPHECRLRDMTYSAPITVDIEYTRGNQRVVRN---------- 121

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
                       N+ IGR+P+M++S  C + G       +  +C  D GGYF++KG EKV 
Sbjct: 122  -----------NLPIGRMPIMLRSSNCVLTGKSPSELAKLKECPLDPGGYFLVKGVEKVI 170

Query: 206  VAQEQICLKRLWVSNS----MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYF 261
            + QEQ+   R+ V       +  +V   +  ++ +  V           K  +  L    
Sbjct: 171  LIQEQLSKNRMIVETDRKGLISCSVTSSTHERKTKTYVVQ---------KNAKYFLKHNT 221

Query: 262  LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNAL 321
             + +IPI I F A+GV SD+EIV LI     D   +  +  S+ +  +K   F + + AL
Sbjct: 222  FTEDIPIAIAFKAMGVESDQEIVQLIG---TDARTMAAVAPSLEEC-HKAQVFTQ-KQAL 276

Query: 322  KYVDKLIK-----GTTFPPGESTEECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAY 372
            +++   ++     G      E   E +++ +   +   K     K  +L  MV+ ++QA 
Sbjct: 277  RFIGVKVRRSRWGGPKRTRVEEAREVLHSTILAHVPVVKFNFRLKCVYLALMVRRVVQAQ 336

Query: 373  SGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR-PIEYY 431
            +  R  D+RD + NKRLELAG+LL    +         + K   + +   R  +  I  +
Sbjct: 337  AQDR-VDDRDYYGNKRLELAGQLLALLFEDLFKKFNAELKKIADQTIPKPRAAQFDIVKH 395

Query: 432  LDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGK 491
            +    +TNGL  A STG W+    + +R +G+   L R + +  L  + R   Q + T K
Sbjct: 396  MRQDQITNGLVNAISTGNWTVKRFKMDR-AGVTQVLSRLSFISALGMMTRISSQFEKTRK 454

Query: 492  VGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLVSTSILEPIFEQLFNSGMEKLA 550
            V   R   PS WG +C   TP+GE CGLVKNL + T + + S  +PI    FN G+E + 
Sbjct: 455  VSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDSEEQPIQRLAFNLGVEDVH 514

Query: 551  DDASYSLGGK--FKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVR 608
              +   L  +  + V ++G+ +GV  D    +   R+ RR   +   V I  +     V 
Sbjct: 515  LLSGEELNSQDSYLVMLNGNILGVICDHQHLIRSFRKMRRAGYINEFVSICPNHEHRCVN 574

Query: 609  IFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGIIELVGTEEEEDCCT 661
            I  DAGR+ RP ++V N G+       I+ L      F+  L  G++E +   EE DC  
Sbjct: 575  IASDAGRVCRPYIIVTN-GRPMVTNRHIEELTKGYRAFEDFLREGLVEYLDVNEENDC-- 631

Query: 662  AWGIKYLLKDI--EDKKPIKF----------THCELDMSFLLGLSCGIIPFANHDHARRV 709
               I     DI  ED+  ++           TH E++   +LG+  G+IP+ +H+ + R 
Sbjct: 632  --NITLYEADITREDETTLEHLQCFVSCRDTTHLEIEPFTILGVCAGLIPYPHHNQSPRN 689

Query: 710  LYQSQ--KHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILP 767
             YQ    K +  AIG+   N   R+DTL + L +PQRP+ +T   +           ++ 
Sbjct: 690  TYQCAMGKQAMGAIGYNQHN---RIDTLLYLLVFPQRPMVKTKTIE-----------LID 735

Query: 768  RPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRR 827
              +L  GQNA VAV  + GY+ ED+L++N++S++RG  R    R     +     Q   R
Sbjct: 736  YEKLPAGQNATVAVMSYSGYDIEDALILNKSSVDRGFGRCLVYRKQNCTLKRYSNQTFDR 795

Query: 828  SSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA------------ 875
                MV+    +  I R + LD DG    G  +Q+  +++ K                  
Sbjct: 796  VMGPMVD-AATRKPIWRHEILDVDGICAPGERVQNKQVLVNKSMPKQTMNPVQTPGQQPE 854

Query: 876  --DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
              D  I  K      V+ V++SSN +      + LRQ R P +GDKFSS HGQKGV G +
Sbjct: 855  YQDVPITYKGPVDSYVETVLVSSNQEEAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLI 914

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
             +QE+ PFT QGI PDI++NPH FPSR T G+L+E   GK       G+  G   Y T F
Sbjct: 915  VNQEDMPFTDQGICPDIIMNPHGFPSRMTVGKLMELLAGKA------GVLEGKFHYGTAF 968

Query: 994  ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
                V  + E+L + GF+  G + L  G TGE + + I+ GP +YQ+L HM  DK+  R 
Sbjct: 969  GGSKVKDVCEELVQHGFNYQGKDYLTSGITGEPLNAYIYTGPVYYQKLKHMVLDKIHARA 1028

Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
             GP   LTRQP   R R GG++ GEMERDCLI +GA+  L ERL   SD +++ +C +C 
Sbjct: 1029 KGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDQFEVDVCGEC- 1087

Query: 1114 NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
                        G      +C+ C S  ++    +PY  KLL QEL SM I  + 
Sbjct: 1088 ------------GLLGYSGWCQYCKSSRNVSSLKMPYACKLLFQELQSMNIAPRL 1130


>gi|89274894|gb|ABD65888.1| RNA polymerase II second largest subunit, partial [Laetiporus
            sulphureus]
          Length = 897

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 305/878 (34%), Positives = 462/878 (52%), Gaps = 94/878 (10%)

Query: 258  SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG 317
            ++ ++  +IPIW++F ALGV SD++I+  I +  +D  +L +L   I D     D     
Sbjct: 51   TIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDVQMLEMLKPCIDDGFVIQDR---- 106

Query: 318  RNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSLH----GTKQKARFLGYMVKCL 368
              AL ++    +GTT            +E +   + P +        +KA F GYM+  L
Sbjct: 107  EVALDFIGN--RGTTTGLNRERRLRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRL 164

Query: 369  LQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPI 428
            L A   RR  D+RD F  KRL+LAG LL    ++      K + + LQ+ +   +     
Sbjct: 165  LLAAMERRDLDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHK----- 219

Query: 429  EYYLDASI----LTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQ 484
            E+ L+ ++    +TNGL  + +TG W    K     +G+   L R     TL  LRR   
Sbjct: 220  EFNLNLAVKHNTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNT 279

Query: 485  QVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFN 543
             +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  S+  P+ E L  
Sbjct: 280  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEE 339

Query: 544  SGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDEL 603
             G+E L ++A +S     KVFV+G W+GV +D  + V  +++ RR+ ++  +V + RD  
Sbjct: 340  WGLESLEENA-HSATPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIR 398

Query: 604  QSEVRIFMDAGRILRPLLVVENMGKI------------KSLEGKNYTFQALLDHGIIELV 651
            + E+R++ DAGR+ RPL +VEN   +            +  EGK Y + +L+  G+IEL+
Sbjct: 399  ERELRLYTDAGRVCRPLFIVENQQLLLAKKHIQYLNDGQDEEGKPYKWDSLVKGGVIELL 458

Query: 652  GTEEEED---CCT----------AWGIKYLLKDIEDKKPIK---------FTHCELDMSF 689
              EEEE    C T          +  I   + D E     +         +THCE+  S 
Sbjct: 459  DAEEEETVMICMTPEDLENSRMQSNTIDSHMNDGEFDPAARLKATTNTHTWTHCEIHPSM 518

Query: 690  LLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRT 749
            +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DT+++ L+YPQ+PL  T
Sbjct: 519  ILGVCASIIPFPDHNQSPRNTYQSAM-GKQAMGIYLTNFLVRMDTMANILYYPQKPLATT 577

Query: 750  MISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEH 809
               +            L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS +
Sbjct: 578  RSME-----------YLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIY 626

Query: 810  IRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGK 869
             RSY  +++ K    +    +       ++ K G  D L+DDG    G  +   DI+IGK
Sbjct: 627  YRSY-MDLEKKSGIQQLEEFEKPTRENTLRMKHGTYDKLEDDGLIAPGTGVNGEDIIIGK 685

Query: 870  YA---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSP 914
             A                +  D S  LK TE G++ +V++++N +G+ F  + +R  R P
Sbjct: 686  TAPIPPDSEELGQRTRAHTRRDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRIP 745

Query: 915  CLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKG 974
             +GDKF+S HGQKG +G    QE+ PFT +GI PDIVINPHA PSR T G L+E  L K 
Sbjct: 746  QIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIVINPHAIPSRMTIGHLVECLLSKV 805

Query: 975  IAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIG 1034
               +G       +  ATPF   +V+++++ L + G+   G E +Y G TG  +++ +++G
Sbjct: 806  ATLIGN------EGDATPFTDLTVESVSQFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLG 859

Query: 1035 PTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFG 1072
            PT+YQRL HM +DK+  R  GPV  LTRQPV  R R G
Sbjct: 860  PTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDG 897


>gi|417405955|gb|JAA49663.1| Putative rna polymerase i second largest subunit [Desmodus rotundus]
          Length = 1133

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 366/1185 (30%), Positives = 554/1185 (46%), Gaps = 146/1185 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYASMRFG 89
            +F    GLV   I+S+N FI   ++K        I++     +   +  W  +Y ++  G
Sbjct: 32   AFLKVKGLVKQHIDSFNYFINVEIKK--------IMKANEKVTSDADPMWYLKYLNIYVG 83

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
               +++ SF          + P   RL++MTYS+ + V +++              T   
Sbjct: 84   LPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEY--------------TRGS 123

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
            Q I +  L        IGR+P+M++S  C + G       +  +C  D GGYFI+KG EK
Sbjct: 124  QRIIRNALP-------IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEK 176

Query: 204  VFVAQEQICLKRLWVS----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            V + QEQ+   R+ V      ++G +V   +  K++R      +M+    +K G   L  
Sbjct: 177  VILIQEQLSKNRIIVEADRKGAVGASVTSSTHEKKSR-----TNMA----VKQGRFYLRH 227

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
              LS +IPI I+F A+GV SD+EIV +I     +  ++     S+ +   K   F +   
Sbjct: 228  NTLSEDIPIVIIFKAMGVESDQEIVQMIG---TEEHVMAAFGPSLEEC-QKAQIFTQ-MQ 282

Query: 320  ALKYVDKLIKGTTF----PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGR 375
            ALKY+   ++        P     EE     L  S   T    +   +  KC+  A   R
Sbjct: 283  ALKYIGNKVRRQRMWGGGPKKTKIEEARE--LLASTILTHVPVKEFNFRAKCIYTAVMVR 340

Query: 376  R--------KCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR- 426
            R        K D+RD + NKRLELAG+LL    +         M K   + +   R  + 
Sbjct: 341  RVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQF 400

Query: 427  PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
             +  ++    +TNG+  A STG WS    + +R  G+   L R + +  L  + R   Q 
Sbjct: 401  DVVKHMRQDQITNGMVNAISTGNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQF 459

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSG 545
            + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + + PI +   N G
Sbjct: 460  EKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLG 519

Query: 546  MEKL----ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
            +E +     ++ SY     F VF++G+ +GV +D    V+  R  RR   +   V I  +
Sbjct: 520  VEDVNLLCGEELSYP--NVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTN 577

Query: 602  ELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHGIIELVGTEE 655
                 V I  D GR+ RP ++V+          ++ L      F+  L   ++E +   E
Sbjct: 578  LTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNE 637

Query: 656  EEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQK 715
            E DC  A     + KD         TH E++   LLG+  G+IP+ +H+ + R  YQ   
Sbjct: 638  ENDCNVALYEHTINKDT--------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-A 688

Query: 716  HSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQ 775
               QA+G    N   R+DTL + L YPQ+P+ +T   +           ++   +L  GQ
Sbjct: 689  MGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIE-----------LIEFEKLPAGQ 737

Query: 776  NAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF 835
            NA VAV  + GY+ ED+LV+N+ASL+RG  R    ++ K  +     Q   +    M++ 
Sbjct: 738  NATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLD- 796

Query: 836  GKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA----------------DHSI 879
               +  I R + LD DG    G  +++  +++ K   +                  D  I
Sbjct: 797  AATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSTVPQQPQYKDVPI 856

Query: 880  KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENF 939
              K      ++KV++SSN +      + LRQ R P +GDKFSS HGQKGV G +  QE+ 
Sbjct: 857  TYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDM 916

Query: 940  PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVD 999
            PF   GI PDI++NPH FPSR T G+L+E   GK       G+  G   Y T F    V 
Sbjct: 917  PFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKA------GVLDGRFHYGTAFGGSKVK 970

Query: 1000 AITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHP 1059
             + E L R G++  G + +  G TGE + + I+ GP +YQ+L HM  DK+  R  GP   
Sbjct: 971  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030

Query: 1060 LTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVI 1119
            LTRQP   R R GG++ GEMERDCLI +GA+  L ERL   SD++++ +C +C       
Sbjct: 1031 LTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQC------- 1083

Query: 1120 QRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
                  G      +C  C S   +    +PY  KLL QEL SM I
Sbjct: 1084 ------GLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNI 1122


>gi|326912147|ref|XP_003202415.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
            [Meleagris gallopavo]
          Length = 1129

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 369/1184 (31%), Positives = 554/1184 (46%), Gaps = 145/1184 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYASMRFG 89
            +F    GLV   I+S+N FI   ++K        I++     +   +  W  +Y ++  G
Sbjct: 29   AFLKVKGLVKQHIDSFNYFINVEIKK--------IMKANEKVTSDADPMWYLKYLNIYVG 80

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
               +++ SF          + P   RL++MTYS+ + V +++              T   
Sbjct: 81   TPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEY--------------TRGS 120

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
            Q I +  L        IGR+P+M++S  C + G       +  +C  D GGYFI+KG EK
Sbjct: 121  QRIIRNALP-------IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEK 173

Query: 204  VFVAQEQICLKRLWVS----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            V + QEQ+   R+ V      ++G +V   +  K++R    LV       +K G   L  
Sbjct: 174  VILIQEQLSKNRIIVEADRKGTVGASVTSSTHEKKSR--TNLV-------VKQGRFYLRH 224

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
              LS +IPI I+F A+GV SD+EIV +I  T E    +   FA   +   K   F +   
Sbjct: 225  NTLSEDIPIAIIFKAMGVESDQEIVQMIG-TEEH---VMAAFAPSLEECQKAQIFTQ-MQ 279

Query: 320  ALKYVDKLIKGTTF---PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRR 376
            ALKY+   ++       P     EE     L  S   T    +   +  KC+  A   RR
Sbjct: 280  ALKYIGNKVRRQRMWGGPKKTKMEEARE--LLASTILTHVLVKEFNFRAKCIYTAVMVRR 337

Query: 377  --------KCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR-P 427
                    K D+RD + NKRLELAG+LL    +         + K   + +   R  +  
Sbjct: 338  VILAQGENKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSELKKIADQVIPKQRAAQFD 397

Query: 428  IEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQ 487
            +  ++    +TNG+  A STG WS    + +R  G+   L R + +  L  + R   Q +
Sbjct: 398  VVKHMRQDQITNGMVNAISTGNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQFE 456

Query: 488  YTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGM 546
             T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + + PI +   N G+
Sbjct: 457  KTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLASNLGV 516

Query: 547  EKL----ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
            E +     ++ SY     F VF++G+ +GV +D    V+  R  RR   +   V I  + 
Sbjct: 517  EDVNLLCGEELSYP--NVFLVFLNGNILGVIRDHQKLVNTFRIMRRAGYINEFVSISTNL 574

Query: 603  LQSEVRIFMDAGRILRPLLVVENMG------KIKSLEGKNYTFQALLDHGIIELVGTEEE 656
                V I  D GR+ RP ++V+          ++ L      F+  L  G++E +   EE
Sbjct: 575  SDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHEGLVEYLDVNEE 634

Query: 657  EDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKH 716
             DC  A     + KD         TH E++   LLG+  G+IP+ +H+ + R  YQ    
Sbjct: 635  NDCNIALYEHTINKDT--------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-AM 685

Query: 717  SSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQN 776
              QA+G    N   R+DTL + L YPQ+P+ +T   +           ++   +L  GQN
Sbjct: 686  GKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIE-----------LIDFEKLPAGQN 734

Query: 777  AIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFG 836
            A VAV  + GY+ ED+LV+N+ASL+RG  R    ++ K  +     Q   +    M++  
Sbjct: 735  ATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLD-A 793

Query: 837  KIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA----------------DHSIK 880
              +  I R + LD DG    G  +++  +++ K   +                  D  + 
Sbjct: 794  ATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQTPLEGSSVPQQPQYKDVPVT 853

Query: 881  LKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFP 940
             K      ++KV++SSN +      + LRQ R P +GDKFSS HGQKGV G +  QE+ P
Sbjct: 854  YKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMP 913

Query: 941  FTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDA 1000
            F   GI PDI++NPH FPSR T G+L+E   GK       G+  G   Y T F    V  
Sbjct: 914  FCDTGICPDIIMNPHGFPSRMTVGKLIELLAGKA------GVLDGRFHYGTAFGGSKVKD 967

Query: 1001 ITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPL 1060
            + E L R G++  G + +  G TGE + + I+ GP +YQ+L HM  DK+  R  GP   L
Sbjct: 968  VCEDLIRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVL 1027

Query: 1061 TRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQ 1120
            TRQP   R R GG++ GEMERDCLI +GA+  L ERL   SD++++ +C +C        
Sbjct: 1028 TRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQC-------- 1079

Query: 1121 RVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
                 G      +C  C S   +    +PY  KLL QEL SM I
Sbjct: 1080 -----GLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNI 1118


>gi|402887513|ref|XP_003907136.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 1
            [Papio anubis]
          Length = 1133

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 366/1185 (30%), Positives = 554/1185 (46%), Gaps = 146/1185 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYASMRFG 89
            +F    GLV   I+S+N FI   ++K        I++     +   +  W  +Y ++  G
Sbjct: 32   AFLKVKGLVKQHIDSFNYFINVEIKK--------IMKANEKVTSDADPMWYLKYLNIYVG 83

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
               +++ SF          + P   RL++MTYS+ + V +++              T   
Sbjct: 84   LPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEY--------------TRGS 123

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
            Q I +  L        IGR+P+M++S  C + G       +  +C  D GGYFI+KG EK
Sbjct: 124  QRIIRNALP-------IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEK 176

Query: 204  VFVAQEQICLKRLWVS----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            V + QEQ+   R+ V      ++G +V   +  K++R      +M+    +K G   L  
Sbjct: 177  VILIQEQLSKNRIIVEADRKGAVGASVTSSTHEKKSR-----TNMA----VKQGRFYLRH 227

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
              LS +IPI I+F A+GV SD+EIV +I     +  ++     S+ +   K   F +   
Sbjct: 228  NTLSEDIPIVIIFKAMGVESDQEIVQMIG---TEEHVMAAFGPSLEEC-QKAQIFTQ-MQ 282

Query: 320  ALKYVDKLIKGTTF----PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGR 375
            ALKY+   ++        P     EE     L  S   T    +   +  KC+  A   R
Sbjct: 283  ALKYIGNKVRRQRMWGGGPKKTKIEEARE--LLASTILTHVPVKEFNFRAKCIYTAVMVR 340

Query: 376  R--------KCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR- 426
            R        K D+RD + NKRLELAG+LL    +         M K   + +   R  + 
Sbjct: 341  RVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQF 400

Query: 427  PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
             +  ++    +TNG+  A STG WS    + +R  G+   L R + +  L  + R   Q 
Sbjct: 401  DVVKHMRQDQITNGMVNAISTGNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQF 459

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSG 545
            + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + + PI +   N G
Sbjct: 460  EKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLG 519

Query: 546  MEKL----ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
            +E +     ++ SY     F VF++G+ +GV +D    V+  R  RR   +   V I  +
Sbjct: 520  VEDVNLLCGEELSYP--NVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTN 577

Query: 602  ELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHGIIELVGTEE 655
                 V I  D GR+ RP ++V+          ++ L      F+  L   ++E +   E
Sbjct: 578  LTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNE 637

Query: 656  EEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQK 715
            E DC  A     + KD         TH E++   LLG+  G+IP+ +H+ + R  YQ   
Sbjct: 638  ENDCNIALYEHTINKDT--------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-A 688

Query: 716  HSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQ 775
               QA+G    N   R+DTL + L YPQ+P+ +T   +           ++   +L  GQ
Sbjct: 689  MGKQAMGTIGYNQQNRIDTLMYLLAYPQKPMVKTKTIE-----------LIEFEKLPAGQ 737

Query: 776  NAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF 835
            NA VAV  + GY+ ED+LV+N+ASL+RG  R    ++ K  +     Q   +    M++ 
Sbjct: 738  NATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLD- 796

Query: 836  GKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA----------------DHSI 879
               +  I R + LD DG    G  +++  +++ K   +                  D  I
Sbjct: 797  AATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPI 856

Query: 880  KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENF 939
              K      ++KV++SSN +      + LRQ R P +GDKFSS HGQKGV G +  QE+ 
Sbjct: 857  TYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDM 916

Query: 940  PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVD 999
            PF   GI PDI++NPH FPSR T G+L+E   GK       G+  G   Y T F    V 
Sbjct: 917  PFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKA------GVLDGRFHYGTAFGGSKVK 970

Query: 1000 AITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHP 1059
             + E L R G++  G + +  G TGE + + I+ GP +YQ+L HM  DK+  R  GP   
Sbjct: 971  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030

Query: 1060 LTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVI 1119
            LTRQP   R R GG++ GEMERDCLI +GA+  L ERL   SD++++ +C +C       
Sbjct: 1031 LTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQC------- 1083

Query: 1120 QRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
                  G      +C  C S   +    +PY  KLL QEL SM I
Sbjct: 1084 ------GLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNI 1122


>gi|332241688|ref|XP_003270010.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 1
            [Nomascus leucogenys]
          Length = 1133

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 366/1185 (30%), Positives = 554/1185 (46%), Gaps = 146/1185 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYASMRFG 89
            +F    GLV   I+S+N FI   ++K        I++     +   +  W  +Y ++  G
Sbjct: 32   AFLKVKGLVKQHIDSFNYFINVEIKK--------IMKANEKVTSDADPMWYLKYLNIYVG 83

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
               +++ SF          + P   RL++MTYS+ + V +++              T   
Sbjct: 84   LPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEY--------------TRGS 123

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
            Q I +  L        IGR+P+M++S  C + G       +  +C  D GGYFI+KG EK
Sbjct: 124  QRIIRNALP-------IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEK 176

Query: 204  VFVAQEQICLKRLWVS----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            V + QEQ+   R+ V      ++G +V   +  K++R      +M+    +K G   L  
Sbjct: 177  VILIQEQLSKNRIIVEADRKGAVGASVTSSTHEKKSR-----TNMA----VKQGRFYLRH 227

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
              LS +IPI I+F A+GV SD+EIV +I     +  ++     S+ +   K   F +   
Sbjct: 228  NTLSEDIPIVIIFKAMGVESDQEIVQMIG---TEEHVMAAFGPSLEEC-QKAQIFTQ-MQ 282

Query: 320  ALKYVDKLIKGTTF----PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGR 375
            ALKY+   ++        P     EE     L  S   T    +   +  KC+  A   R
Sbjct: 283  ALKYIGNKVRRQRMWGGGPKKTKIEEARE--LLASTILTHVPVKEFNFRAKCIYTAVMVR 340

Query: 376  R--------KCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR- 426
            R        K D+RD + NKRLELAG+LL    +         M K   + +   R  + 
Sbjct: 341  RVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQF 400

Query: 427  PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
             +  ++    +TNG+  A STG WS    + +R  G+   L R + +  L  + R   Q 
Sbjct: 401  DVVKHMRQDQITNGMVNAISTGNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQF 459

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSG 545
            + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + + PI +   N G
Sbjct: 460  EKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLG 519

Query: 546  MEKL----ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
            +E +     ++ SY     F VF++G+ +GV +D    V+  R  RR   +   V I  +
Sbjct: 520  VEDVNLLCGEELSYP--NVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTN 577

Query: 602  ELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHGIIELVGTEE 655
                 V I  D GR+ RP ++V+          ++ L      F+  L   ++E +   E
Sbjct: 578  LTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNE 637

Query: 656  EEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQK 715
            E DC  A     + KD         TH E++   LLG+  G+IP+ +H+ + R  YQ   
Sbjct: 638  ENDCNIALYEHTINKDT--------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-A 688

Query: 716  HSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQ 775
               QA+G    N   R+DTL + L YPQ+P+ +T   +           ++   +L  GQ
Sbjct: 689  MGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIE-----------LIEFEKLPAGQ 737

Query: 776  NAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF 835
            NA VAV  + GY+ ED+LV+N+ASL+RG  R    ++ K  +     Q   +    M++ 
Sbjct: 738  NATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLD- 796

Query: 836  GKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA----------------DHSI 879
               +  I R + LD DG    G  +++  +++ K   +                  D  I
Sbjct: 797  AATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPI 856

Query: 880  KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENF 939
              K      ++KV++SSN +      + LRQ R P +GDKFSS HGQKGV G +  QE+ 
Sbjct: 857  TYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDM 916

Query: 940  PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVD 999
            PF   GI PDI++NPH FPSR T G+L+E   GK       G+  G   Y T F    V 
Sbjct: 917  PFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKA------GVLDGRFHYGTAFGGSKVK 970

Query: 1000 AITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHP 1059
             + E L R G++  G + +  G TGE + + I+ GP +YQ+L HM  DK+  R  GP   
Sbjct: 971  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030

Query: 1060 LTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVI 1119
            LTRQP   R R GG++ GEMERDCLI +GA+  L ERL   SD++++ +C +C       
Sbjct: 1031 LTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQC------- 1083

Query: 1120 QRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
                  G      +C  C S   +    +PY  KLL QEL SM I
Sbjct: 1084 ------GLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNI 1122


>gi|254169060|ref|ZP_04875898.1| DNA-directed RNA polymerase, beta subunit, putative [Aciduliprofundum
            boonei T469]
 gi|197622030|gb|EDY34607.1| DNA-directed RNA polymerase, beta subunit, putative [Aciduliprofundum
            boonei T469]
          Length = 1201

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 383/1262 (30%), Positives = 595/1262 (47%), Gaps = 195/1262 (15%)

Query: 31   VSFFNEYGLVSHQINSYNEFIKNG------LQKAFDSFGETIVEP----GYDPSKKGEGE 80
            V    +  +V+H I SYN+ I         +Q+  D+   T  +P      D +K G   
Sbjct: 5    VDILFKKSVVNHHIASYNDLIPTPDNPNSVMQEIVDTTKVTDEDPPGVITLDRTKTGGKT 64

Query: 81   WR--------YASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQ 132
             +        Y  +    + + +P      G     + P  ARL++++Y + + +K++  
Sbjct: 65   IKIVFGRNNDYWDVNEPTIRIGRPEIKEATGATVQ-ITPMEARLRDLSYLAPLYLKIKVL 123

Query: 133  VYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLC---------WMKGV 183
                     D     RE  + K           IG  PVMVKS +C         ++  +
Sbjct: 124  E------CDDAGCYEREPEMVK-----------IGDFPVMVKSKICTLHEDNIDDYLDSI 166

Query: 184  EK----------------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVA 227
             K                G+   D GGYFII G+E+V V+ E +   R+ V  +  +   
Sbjct: 167  SKDKDILNWPYKQKLEYVGEDPDDPGGYFIIGGSERVLVSLEDLAPNRVLVEKNERYNTV 226

Query: 228  YKSEN--KRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVN 285
             ++     + R    L  M K  D   G  V+SV  ++  IP+ IL  ALG+  D++I  
Sbjct: 227  VETAKVFSQRRGYRALTIMEKKSD---GIIVVSVPAVAGTIPLVILMKALGLEKDQDIYR 283

Query: 286  LIDFTCEDCSILNILFASIHDADN----KCDEFRKGRNALKYVDKLIKGTTFPPGESTE- 340
             I     D  +  I  A+I + +N      +  R  R+A++Y++K      F  G++ E 
Sbjct: 284  AI---VSDEKMSVIALANIEEVENDKLYPPNGIRTQRDAIEYLEK-----RFAAGQAKEY 335

Query: 341  ------ECMNTYLFPSLHGTKQ----KARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLE 390
                  + +++ L P L  +K+    KA +LG M + +L+ + G RK D++D   NKRL+
Sbjct: 336  REKKISQILDSSLLPHLGTSKEDRIKKAYYLGRMARRVLELHLGLRKEDDKDHLANKRLK 395

Query: 391  LAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAW 450
            L+G+LLE   ++      K +   L+R     + +R I   +   +LT  +  A STG W
Sbjct: 396  LSGDLLEELFRMAFEALMKDLKYQLERTYNRKKGIR-IRVSIRQDVLTQKIMHAMSTGNW 454

Query: 451  SHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLS 510
                 RT    G+   L R + + TL  LRR    +  +    +AR  HP+ WG++C   
Sbjct: 455  VG--GRT----GVSQLLDRTSHMSTLSHLRRVISPLTRSQPHFEARDLHPTQWGRLCPNE 508

Query: 511  TPDGENCGLVKNLGVTGLVSTSILEP-IFEQLFNSGMEKLADDASYSLGGKFKVFVDGDW 569
            TP+G+NCGLVKN  +   VS    E  + + L   G+E    +  Y  G   +V+++G+ 
Sbjct: 509  TPEGQNCGLVKNAALIIDVSEGYPEEDVLKILKGLGVE----ERQYETGELARVYLNGNL 564

Query: 570  IGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKI 629
            +G  KD L+  +E+R +RR+  +  Q+ I+ D+  +EV I  D GRI RPLLVVEN G +
Sbjct: 565  VGYHKDGLALTNEIRSRRRKGLISHQINIRYDDTTNEVMINSDKGRIRRPLLVVEN-GNV 623

Query: 630  KS-------LEGKNYTFQALLDHGIIELVGTEEEEDCCTA-------------------- 662
            K        L       + L+  G++E +  EEEE+   A                    
Sbjct: 624  KYTSRHRELLRRGKMDIEDLVREGVVEWIDAEEEENAYIAVYAYDVPERCPHCGRVLGRN 683

Query: 663  ---W-----GIKYLLK--------DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHA 706
               W     G K  L+         +E K   + TH E+D   +LG   G +P+ +H+ +
Sbjct: 684  DVEWMNPGEGEKVTLRCKHCGAEFGVEKKITKEHTHLEIDPLLILGAVAGCVPYPHHNSS 743

Query: 707  RRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHIL 766
             R+   +     Q++G P  N   R DT  H L YPQ P+ RT   D +        + +
Sbjct: 744  PRITMGAAM-LKQSLGLPAANYRRRPDTRGHLLHYPQAPIVRTKTMDFV--------NFM 794

Query: 767  PRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAE----VDNKEM 822
             RP    GQNA+VA+  + GYN +D++VMN+AS+ERG  RS   R+YK+E       +E 
Sbjct: 795  RRPA---GQNAVVAIISYHGYNIQDAIVMNKASVERGFGRSTFFRTYKSEERRYPGGQED 851

Query: 823  QVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA----------- 871
            + +  S D      + + K+     LD+DG       ++ GD++IGK +           
Sbjct: 852  KFEIPSPDVRGAMTEDRYKL-----LDEDGLISPEVYVKGGDVLIGKTSPPRFLEEESEL 906

Query: 872  ---DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKG 928
                   + S+ ++  E G V  V+L+ +++      V +R  R P LGDKF+S HGQKG
Sbjct: 907  LGPQKRRESSVTMRPEEEGWVDSVLLTVSENNSRLVKVKVRDQRIPELGDKFASRHGQKG 966

Query: 929  VLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKR 988
            V+G +  QE+ PFT  GI+PD++INPHA PSR T G +LE   GK + +L      G   
Sbjct: 967  VVGAIIPQEDMPFTESGIIPDLIINPHAIPSRMTVGHILEMIGGK-VGSLEGRFVDG--- 1022

Query: 989  YATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDK 1048
              T F+     A+ E L + GF   G E +YDG TG  + + IF+G  +YQ+L HM   K
Sbjct: 1023 --TVFSGEPEKALREALVKNGFKYNGKEIMYDGITGRKIEAEIFVGVIYYQKLHHMVAGK 1080

Query: 1049 VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHI 1108
               R+ GPV  LTRQP   R R GG++FGEMERD LI HGAA  + +RL   SD   +++
Sbjct: 1081 FHARSRGPVQILTRQPTEGRSRLGGLRFGEMERDTLIGHGAAMVIKDRLLDNSDGTVLYV 1140

Query: 1109 C--RKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITL 1166
            C   +C ++A +  R  G  R      C +C +  +I      Y  KL+  EL S+G+ +
Sbjct: 1141 CGNPECGHIA-MFDRKRGILR------CPVCGNTTNIYPIETSYAFKLMHDELASLGVIM 1193

Query: 1167 KF 1168
            + 
Sbjct: 1194 RM 1195


>gi|149742988|ref|XP_001499030.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Equus
            caballus]
          Length = 1133

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 366/1185 (30%), Positives = 554/1185 (46%), Gaps = 146/1185 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYASMRFG 89
            +F    GLV   I+S+N FI   ++K        I++     +   +  W  +Y ++  G
Sbjct: 32   AFLKVKGLVKQHIDSFNYFINVEIKK--------IMKANEKVTSDADPMWYLKYLNIYVG 83

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
               +++ SF          + P   RL++MTYS+ + V +++              T   
Sbjct: 84   LPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEY--------------TRGS 123

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
            Q I +  L        IGR+P+M++S  C + G       +  +C  D GGYFI+KG EK
Sbjct: 124  QRIIRNALP-------IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEK 176

Query: 204  VFVAQEQICLKRLWVS----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            V + QEQ+   R+ V      ++G +V   +  K++R      +M+    +K G   L  
Sbjct: 177  VILIQEQLSKNRIIVEADRKGTVGASVTSSTHEKKSR-----TNMA----VKQGRFYLRH 227

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
              LS +IPI I+F A+GV SD+EIV +I     +  ++     S+ +   K   F +   
Sbjct: 228  NTLSEDIPIVIIFKAMGVESDQEIVQMIG---TEEHVMAAFGPSLEEC-QKAQIFTQ-MQ 282

Query: 320  ALKYVDKLIKGTTF----PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGR 375
            ALKY+   ++        P     EE     L  S   T    +   +  KC+  A   R
Sbjct: 283  ALKYIGNKVRRQRMWGGGPKKTKIEEARE--LLASTILTHVPVKEFNFRAKCIYTAVMVR 340

Query: 376  R--------KCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR- 426
            R        K D+RD + NKRLELAG+LL    +         M K   + +   R  + 
Sbjct: 341  RVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQF 400

Query: 427  PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
             +  ++    +TNG+  A STG WS    + +R  G+   L R + +  L  + R   Q 
Sbjct: 401  DVVKHMRQDQITNGMVNAISTGNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQF 459

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSG 545
            + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + + PI +   N G
Sbjct: 460  EKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLG 519

Query: 546  MEKL----ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
            +E +     ++ SY     F VF++G+ +GV +D    V+  R  RR   +   V I  +
Sbjct: 520  VEDVNLLCGEELSYP--NVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTN 577

Query: 602  ELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHGIIELVGTEE 655
                 V I  D GR+ RP ++V+          ++ L      F+  L   ++E +   E
Sbjct: 578  LTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNE 637

Query: 656  EEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQK 715
            E DC  A     + KD         TH E++   LLG+  G+IP+ +H+ + R  YQ   
Sbjct: 638  ENDCNIALYEHTINKDT--------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-A 688

Query: 716  HSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQ 775
               QA+G    N   R+DTL + L YPQ+P+ +T   +           ++   +L  GQ
Sbjct: 689  MGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIE-----------LIEFEKLPAGQ 737

Query: 776  NAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF 835
            NA VAV  + GY+ ED+LV+N+ASL+RG  R    ++ K  +     Q   +    M++ 
Sbjct: 738  NATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLD- 796

Query: 836  GKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA----------------DHSI 879
               +  I R + LD DG    G  +++  +++ K   +                  D  I
Sbjct: 797  AATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPI 856

Query: 880  KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENF 939
              K      ++KV++SSN +      + LRQ R P +GDKFSS HGQKGV G +  QE+ 
Sbjct: 857  TYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDM 916

Query: 940  PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVD 999
            PF   GI PDI++NPH FPSR T G+L+E   GK       G+  G   Y T F    V 
Sbjct: 917  PFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKA------GVLDGRFHYGTAFGGSKVK 970

Query: 1000 AITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHP 1059
             + E L R G++  G + +  G TGE + + I+ GP +YQ+L HM  DK+  R  GP   
Sbjct: 971  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030

Query: 1060 LTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVI 1119
            LTRQP   R R GG++ GEMERDCLI +GA+  L ERL   SD++++ +C +C       
Sbjct: 1031 LTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQC------- 1083

Query: 1120 QRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
                  G      +C  C S   +    +PY  KLL QEL SM I
Sbjct: 1084 ------GLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNI 1122


>gi|340517820|gb|EGR48063.1| predicted protein [Trichoderma reesei QM6a]
          Length = 1158

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 386/1236 (31%), Positives = 579/1236 (46%), Gaps = 173/1236 (13%)

Query: 8    FTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIV 67
             TDP S  +   + L  F +   +S        +  I+SYN F+++ +++   +   TI 
Sbjct: 21   LTDPISTKEDKFQLLPAFLKVKGLS-------CARHIDSYNFFVEHEIKEIVRA-NRTI- 71

Query: 68   EPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEH-DMFPRHARLQNMTYSSRMK 126
                  S      W    + F  + +D+P     N      ++ P   RL++MTY++ + 
Sbjct: 72   -----RSDVDSNFW----LEFTDIRVDRPRRLDYNDSKSRTEVTPMECRLRDMTYAAPIF 122

Query: 127  VKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV--- 183
            V + +          DK K  R+             N+ +GR+PVM+KS  C + G    
Sbjct: 123  VDIAY--------IRDKQKIVRK-------------NVPLGRMPVMLKSCKCRLSGANNS 161

Query: 184  ---EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKRN 235
               +  +C  D GGYFI+ G EKV + QEQ+   R+ V     +N +  +V   +  +++
Sbjct: 162  QMEQMNECPLDPGGYFIVNGTEKVILIQEQLSKNRVIVEADEKNNVISASVTSSTHERKS 221

Query: 236  RLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLI---DFTCE 292
            +  V L         K  + VL+   L   +PI I+  ALG  SD EI+ L+   D   +
Sbjct: 222  KTYVTL---------KKDKIVLTHNILVEGVPIVIVLKALGGLSDYEIMQLVAGSDGRYQ 272

Query: 293  DCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLH 352
            D  ++N       D   K   F + + AL+Y+   +K  +   G+   +     +   L 
Sbjct: 273  DEFLVNF------DEAAKAGIFTQ-QQALEYIGSRVKMGS-KKGQFGAQARRNNVEEGLD 324

Query: 353  GTKQ---------------KARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL- 396
                               KA ++  M + +L A    +  D+RD   NKRLELAG+LL 
Sbjct: 325  ALANLIIAHVPIEGLDFYPKAIYVAMMTRRVLMASQDPKLVDDRDFVGNKRLELAGQLLS 384

Query: 397  ---ERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTN----GLSRAFSTGA 449
               E   K  ++  +  + K L+++   +R V P++     S   N    G++RA  +G 
Sbjct: 385  LLFEDLFKRFMSEVKMSIDKFLKKN---NRAV-PLDAVHMISNHANSIGLGINRAIQSGN 440

Query: 450  WSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFL 509
            W+       R +G+   L R + +  L  + R   Q + T KV   R   PS WG +C  
Sbjct: 441  WTVKRFNMNR-AGVTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPS 499

Query: 510  STPDGENCGLVKNLGVTGLVSTSILE-PIFEQLF--NSGMEKLAD--DASYSLGGKFKVF 564
             TP+GE CGLVKNL +   ++T++ E P+   +F  + G+E + +   A     G + + 
Sbjct: 500  DTPEGEACGLVKNLALMTHITTNVDEAPVMRWIFTLDVGVEPIRNFSGAEMHREGSYIIH 559

Query: 565  VDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE 624
            V+G    + +    F    R  RRR  +   V I  +   + + I  D GRI RP ++V+
Sbjct: 560  VNGTPFALTRYPKRFTHRFRTMRRRGWISPFVGIHTNSHFNAIHIATDEGRICRPYIIVK 619

Query: 625  NMGK-------IKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKP 677
            N GK       ++ L+    TF   L  GI+E +   EE D         L+   ED+  
Sbjct: 620  N-GKQKLKPEHLRLLQLGKVTFDDFLTKGIVEYLDVNEENDA--------LITIYEDQVT 670

Query: 678  IKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSH 737
            +  TH E++   LLG   G+IPF +H+ + R  YQ      QAIG    N   R+DTL +
Sbjct: 671  MSTTHLEIEPFTLLGAVAGLIPFPHHNQSPRNTYQCAM-GKQAIGAIAHNQFNRIDTLLY 729

Query: 738  QLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNR 797
             L YPQRP+  T     +      H   LP      GQNA V V  + GY+ ED+LV+N+
Sbjct: 730  TLVYPQRPMVITKTIQLI------HYDKLP-----AGQNATVVVMSYSGYDIEDALVLNK 778

Query: 798  ASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF--GKIQSKIGRVDSLDDDGFPF 855
            AS++RG  R +  R Y  E+  K    +R    D VN     +  +I + ++LD DG   
Sbjct: 779  ASIDRGFGRCQVFRKYTTEL-QKYPNGRRERIGDPVNEIENGVMRRIKKHEALDADGLAV 837

Query: 856  IGANLQSGDIVIGKYA-----------DSGA----DHSIKLKHTERGMVQKVVLSSNDDG 900
            +G  + SG+ ++ K             D G     D ++  +  +   + KV++S  +  
Sbjct: 838  VGQRIHSGEAMVKKETPLDMTTTGIGLDRGPSEYRDTAVSYRIADPAYIDKVMISQTEKD 897

Query: 901  KNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSR 960
                 V  RQ R P LGDKFSS HGQKGV+G +  QE+ PF   G+ PDI++NPH FPSR
Sbjct: 898  TTVIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVDQEDMPFADSGLCPDIIMNPHGFPSR 957

Query: 961  QTPGQLLEAALGKGIAALGKGICSGLKRYA--TPFATPSVDAITEQLHRAGFSKWGTERL 1018
             T G+LLE   GK        I  G K Y     F +  V+ +++ L   GFS  G +  
Sbjct: 958  MTVGKLLECLTGKA------SIVHGRKEYGFGDAFRSHPVEQVSKVLVDHGFSWEGKDYF 1011

Query: 1019 YDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGE 1078
              G TGE + + IF GP +YQRL HM +DK+  R  GP   LTRQP   R R GG++ GE
Sbjct: 1012 TSGITGEPLEAYIFNGPIYYQRLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGE 1071

Query: 1079 MERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICD 1138
            MERDCLIA+GA+  L ERL   SD   + IC++C            G    RG YC  C 
Sbjct: 1072 MERDCLIAYGASQLLLERLMLSSDGVMIDICQQC------------GLFGYRG-YCGTCK 1118

Query: 1139 SGDDIVKANVPYGAKLLCQELFSM--GITLKFDTEF 1172
            S  ++ K  +PY AKLL QEL SM  G+ L+ + EF
Sbjct: 1119 STREVTKMQMPYAAKLLVQELISMNVGVRLQLEDEF 1154


>gi|347600624|gb|AEP15111.1| DNA-directed RNA polymerase subunit B [Emiliania huxleyi virus 88]
          Length = 1156

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 367/1209 (30%), Positives = 570/1209 (47%), Gaps = 141/1209 (11%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
            + N    V+HQI SY+ FI+N L          I+  G D S           + F   +
Sbjct: 16   YINSVSPVAHQIESYDHFIENQLPY--------IISEGSDISYMHSSGKVSHHVHFTNPS 67

Query: 93   LDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYI 152
            +++P+    +G  +  + P  ARL+ +TYSS + V V        R+            I
Sbjct: 68   VNRPAIQESDGFYK-PITPHIARLRGLTYSSTVVVDV-----IHDRI---NHTVSPPTLI 118

Query: 153  QKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD---------CDFDHGGYFIIKGAEK 203
             ++V      N+II +IPVMV+S LC++  V + D         C  D GGYFII G EK
Sbjct: 119  NRKVFR----NVIIAQIPVMVRSKLCYLADVSENDLSADAKKHECKVDPGGYFIISGNEK 174

Query: 204  VFVAQEQICLKRLWVSNS-----MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVL- 257
              + Q +I    +++  S       +T   +S ++        + M+   DI  GE  + 
Sbjct: 175  TLIPQTKIRTNHVFIFPSKHGEKHKYTAEVRSCHEAKLRSTSTIYMN-INDISNGEVPVI 233

Query: 258  --SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDC-SILNILFASIHDADNKCDEF 314
               + FL + + ++ILF  LG  S  +I+N I    +D  +IL I+     D+D K +  
Sbjct: 234  TCKLPFLKSNLSVFILFRMLGAESTDDIINYIGNIPKDTEAILRIML----DSDTKQNYS 289

Query: 315  RK------GRNAL------------KYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQ 356
            R       GRN              KY+D +I     P         +  L  +    K+
Sbjct: 290  RDAIMDWVGRNVTSDTTRATKESREKYIDHIITSELAP---------HMGLVNNPETNKK 340

Query: 357  KARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHI-AHARKRMAKAL 415
            K  F+G+M++ L+   +G+   D+RDDF NKR++ AG LL   L+ H   +A + ++  L
Sbjct: 341  KMIFIGHMIQRLMSVATGQEVVDDRDDFINKRIDSAGALLALLLRQHHRGNAMQGLSTQL 400

Query: 416  QRDLYGDRTVR-PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERI-----SGIVANLGR 469
            ++ +   R     +   +    +T+GL  AF+TG W     R         +G+V  L R
Sbjct: 401  RKQVESPREATFNVGEIVSHKKITSGLKFAFATGTWG--ISRGGGTANGGQTGVVQILPR 458

Query: 470  ANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLV 529
               + TL   R+    +   G+    R  HPS WG +C   TP+G+ CGLV NL +T  +
Sbjct: 459  LTTMATLGASRKINTPIAREGRTAGPRMLHPSSWGLVCCSDTPEGQACGLVSNLAMTTRI 518

Query: 530  ST-SILEPIFEQLFN-SGMEKLADDASYSLGGKFKVFVDGDWIG--VCKDSL-SFVSELR 584
               + ++PI   L        ++   S+     + + V+G  +G  +  D +    +++R
Sbjct: 519  RIGAPMQPIAILLMTLDHTIDISTATSHERYIGYALHVNGTIVGYAITIDQIKEIATQMR 578

Query: 585  RKRRRKELPTQVEIKRDELQSEVRIFM--DAGRILRPLLVVENMGKIKSLEGKNYT---- 638
              RR   LP    I    + ++  +F+  D G +LRPL++ +       +  +N      
Sbjct: 579  SLRRHGNLPFDCSIS---ISNDNSLFVNSDHGALLRPLIIRDRYHDFVCMAMQNPAVVPN 635

Query: 639  -FQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGI 697
             +  +L  GIIE + + E+    T   +     DIE  +   +TH E+  + L G+    
Sbjct: 636  KYTRMLREGIIEYIDSAEQ----TNMRVAIHHTDIEQDE---YTHIEIHPALLTGICVSQ 688

Query: 698  IPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGK 757
            IPF +H+ + R+ YQ+ +   QAIG  TTN + R+DT+ H L  PQ+PL  T + + LG 
Sbjct: 689  IPFCDHNQSPRIAYQAAQ-CKQAIGLYTTNFAERLDTVGHVLATPQKPLVTTRLEELLGT 747

Query: 758  PGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEV 817
                         + +G   IVA+  + G+NQ+DS+++N++S++RG+F S    + + E 
Sbjct: 748  S-----------VVRSGAVPIVAIMCYSGFNQDDSVLLNQSSIDRGLFTSFAYHTIRDEE 796

Query: 818  DNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA------ 871
                  ++R  +   +  G    K      +DD G P IG    +GD++IGK        
Sbjct: 797  KGTGADIERFENPKNIP-GCSGMKEADYSKIDDKGMPIIGKTFYNGDVLIGKVVSMSLLQ 855

Query: 872  ----------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFS 921
                      D+  D S  L+  E  +V  V LS   +G  +  V  R +R P +GDKFS
Sbjct: 856  ADPKEGEVRRDTKRDRSHVLRTDEPVVVDAVFLSKTPEGHGYVKVRTRAIRIPMVGDKFS 915

Query: 922  SMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKG 981
            S HGQKGV G      +FP T  G+ PDI+INPHA PSR T G L+E  L K +A     
Sbjct: 916  SRHGQKGVCGVTMPAADFPCTADGVAPDIIINPHAIPSRMTIGMLMEMVLSK-VACY--- 971

Query: 982  ICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRL 1041
               G  +  TPF   +++ I ++L   G  ++G E LY+G +GEM+ S+IFI P +YQRL
Sbjct: 972  --EGETQDGTPFTGNNIELIADRLETHGMQRYGNEMLYNGMSGEMLESMIFIAPCYYQRL 1029

Query: 1042 IHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLS 1101
             HM  DK   RN G    LTR P   R R GG++ GEME+D +I+HGA     +RLF  S
Sbjct: 1030 KHMVVDKSHARNRGAQQLLTRAPTEGRSRDGGLRIGEMEKDSIISHGAGDVAKDRLFEQS 1089

Query: 1102 DSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFS 1161
            D ++   C KC + A   +       K  G +C  C +G+      +PY  KLL QEL +
Sbjct: 1090 DIFECVACEKCGHFAR--EGTDDTSVKNSGMWCEHCKTGEHCTHTQLPYSMKLLIQELAA 1147

Query: 1162 MGI--TLKF 1168
              I  TL+F
Sbjct: 1148 AHISATLEF 1156


>gi|238908503|ref|NP_060552.4| DNA-directed RNA polymerase III subunit RPC2 isoform 1 [Homo sapiens]
 gi|388454304|ref|NP_001253862.1| DNA-directed RNA polymerase III subunit RPC2 [Macaca mulatta]
 gi|114646699|ref|XP_001161567.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 3
            [Pan troglodytes]
 gi|301784547|ref|XP_002927687.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
            [Ailuropoda melanoleuca]
 gi|395744767|ref|XP_003778156.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 1
            [Pongo abelii]
 gi|397525258|ref|XP_003832591.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 1
            [Pan paniscus]
 gi|29428029|sp|Q9NW08.2|RPC2_HUMAN RecName: Full=DNA-directed RNA polymerase III subunit RPC2; Short=RNA
            polymerase III subunit C2; AltName: Full=C128; AltName:
            Full=DNA-directed RNA polymerase III 127.6 kDa
            polypeptide; AltName: Full=DNA-directed RNA polymerase
            III subunit B
 gi|28277230|gb|AAH46238.1| Polymerase (RNA) III (DNA directed) polypeptide B [Homo sapiens]
 gi|119618186|gb|EAW97780.1| polymerase (RNA) III (DNA directed) polypeptide B, isoform CRA_a
            [Homo sapiens]
 gi|158256702|dbj|BAF84324.1| unnamed protein product [Homo sapiens]
 gi|355564641|gb|EHH21141.1| hypothetical protein EGK_04143 [Macaca mulatta]
 gi|355786484|gb|EHH66667.1| hypothetical protein EGM_03706 [Macaca fascicularis]
 gi|380814556|gb|AFE79152.1| DNA-directed RNA polymerase III subunit RPC2 isoform 1 [Macaca
            mulatta]
 gi|410213674|gb|JAA04056.1| polymerase (RNA) III (DNA directed) polypeptide B [Pan troglodytes]
 gi|410252446|gb|JAA14190.1| polymerase (RNA) III (DNA directed) polypeptide B [Pan troglodytes]
 gi|410301480|gb|JAA29340.1| polymerase (RNA) III (DNA directed) polypeptide B [Pan troglodytes]
 gi|410336371|gb|JAA37132.1| polymerase (RNA) III (DNA directed) polypeptide B [Pan troglodytes]
          Length = 1133

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 366/1185 (30%), Positives = 554/1185 (46%), Gaps = 146/1185 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYASMRFG 89
            +F    GLV   I+S+N FI   ++K        I++     +   +  W  +Y ++  G
Sbjct: 32   AFLKVKGLVKQHIDSFNYFINVEIKK--------IMKANEKVTSDADPMWYLKYLNIYVG 83

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
               +++ SF          + P   RL++MTYS+ + V +++              T   
Sbjct: 84   LPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEY--------------TRGS 123

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
            Q I +  L        IGR+P+M++S  C + G       +  +C  D GGYFI+KG EK
Sbjct: 124  QRIIRNALP-------IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEK 176

Query: 204  VFVAQEQICLKRLWVS----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            V + QEQ+   R+ V      ++G +V   +  K++R      +M+    +K G   L  
Sbjct: 177  VILIQEQLSKNRIIVEADRKGAVGASVTSSTHEKKSR-----TNMA----VKQGRFYLRH 227

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
              LS +IPI I+F A+GV SD+EIV +I     +  ++     S+ +   K   F +   
Sbjct: 228  NTLSEDIPIVIIFKAMGVESDQEIVQMIG---TEEHVMAAFGPSLEEC-QKAQIFTQ-MQ 282

Query: 320  ALKYVDKLIKGTTF----PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGR 375
            ALKY+   ++        P     EE     L  S   T    +   +  KC+  A   R
Sbjct: 283  ALKYIGNKVRRQRMWGGGPKKTKIEEARE--LLASTILTHVPVKEFNFRAKCIYTAVMVR 340

Query: 376  R--------KCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR- 426
            R        K D+RD + NKRLELAG+LL    +         M K   + +   R  + 
Sbjct: 341  RVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQF 400

Query: 427  PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
             +  ++    +TNG+  A STG WS    + +R  G+   L R + +  L  + R   Q 
Sbjct: 401  DVVKHMRQDQITNGMVNAISTGNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQF 459

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSG 545
            + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + + PI +   N G
Sbjct: 460  EKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLG 519

Query: 546  MEKL----ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
            +E +     ++ SY     F VF++G+ +GV +D    V+  R  RR   +   V I  +
Sbjct: 520  VEDVNLLCGEELSYP--NVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTN 577

Query: 602  ELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHGIIELVGTEE 655
                 V I  D GR+ RP ++V+          ++ L      F+  L   ++E +   E
Sbjct: 578  LTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNE 637

Query: 656  EEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQK 715
            E DC  A     + KD         TH E++   LLG+  G+IP+ +H+ + R  YQ   
Sbjct: 638  ENDCNIALYEHTINKDT--------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-A 688

Query: 716  HSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQ 775
               QA+G    N   R+DTL + L YPQ+P+ +T   +           ++   +L  GQ
Sbjct: 689  MGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIE-----------LIEFEKLPAGQ 737

Query: 776  NAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF 835
            NA VAV  + GY+ ED+LV+N+ASL+RG  R    ++ K  +     Q   +    M++ 
Sbjct: 738  NATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLD- 796

Query: 836  GKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA----------------DHSI 879
               +  I R + LD DG    G  +++  +++ K   +                  D  I
Sbjct: 797  AATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPI 856

Query: 880  KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENF 939
              K      ++KV++SSN +      + LRQ R P +GDKFSS HGQKGV G +  QE+ 
Sbjct: 857  TYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDM 916

Query: 940  PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVD 999
            PF   GI PDI++NPH FPSR T G+L+E   GK       G+  G   Y T F    V 
Sbjct: 917  PFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKA------GVLDGRFHYGTAFGGSKVK 970

Query: 1000 AITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHP 1059
             + E L R G++  G + +  G TGE + + I+ GP +YQ+L HM  DK+  R  GP   
Sbjct: 971  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030

Query: 1060 LTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVI 1119
            LTRQP   R R GG++ GEMERDCLI +GA+  L ERL   SD++++ +C +C       
Sbjct: 1031 LTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQC------- 1083

Query: 1120 QRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
                  G      +C  C S   +    +PY  KLL QEL SM I
Sbjct: 1084 ------GLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNI 1122


>gi|380094948|emb|CCC07450.1| unnamed protein product [Sordaria macrospora k-hell]
          Length = 1150

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 378/1213 (31%), Positives = 564/1213 (46%), Gaps = 175/1213 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW-RYASMRFGQ 90
            +F    GLV   I+SYN F+   ++    +    +V    DP+      W  +  +R G 
Sbjct: 37   AFLKVKGLVKQHIDSYNYFVNEEIKDIVKA--NRVVRSDQDPNF-----WLEFRDIRVGM 89

Query: 91   VTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
             T  +      +G       P   RL+++TY++ ++V + +        T DK    R+ 
Sbjct: 90   PTRTE------DGEQVQSRNP--CRLRDLTYAAPVEVDIAY--------TRDKSVIVRK- 132

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG------DCDFDHGGYFIIKGAEKV 204
                        NI + RIPVM+KS  C++ G          +C  D GGYF+I G EKV
Sbjct: 133  ------------NIPLCRIPVMLKSAKCYLNGATNAQMEVFNECPLDPGGYFVIGGTEKV 180

Query: 205  FVAQEQICLKRLWVSNS------MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLS 258
             + QEQ+   R+ V         M    +   E K    +V          +K    VL 
Sbjct: 181  ILIQEQLSKNRIIVEADEKTGGVMASVTSSTHERKSKTYVV----------LKKDRIVLQ 230

Query: 259  VYFLSTEIPIWILFFALGVSSDKEIVNLI---DFTCEDCSILNILFASIHDADNKCDEFR 315
               LS  IPI I+  A G  SD +I+ L+   D   +D  ++N       D   +   + 
Sbjct: 231  HNTLSEPIPIVIVLKAFGGLSDNDIIELVCGGDARYQDDFLINF------DEAGRAGVYT 284

Query: 316  KGRNALKYVDKLIKGT-------TFPPGESTEECMNTYL-FPSLHGTKQ------KARFL 361
            + + AL+YV   +K           P     EE ++        H T +      KA ++
Sbjct: 285  Q-QQALEYVGARVKMGGNRPKFGAAPRRNHAEEGLDALANLVIAHVTVEGLDFYPKAVYI 343

Query: 362  GYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKR 410
              MV+ +L A    +  D+RD   NKRLELAG+L+             ++K +I +  K+
Sbjct: 344  AMMVRRVLMAAQNPKLVDDRDFVGNKRLELAGQLISLLFEDLFKKFISDVKYNIDNFFKK 403

Query: 411  MAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRA 470
              +    D +G           +   +++GL+RA  +G W+       R +GI   L R 
Sbjct: 404  PNRTSTYDPHG-------AIMANGHYISHGLNRAIQSGNWTVKRFNMNR-AGITHVLSRL 455

Query: 471  NPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVS 530
            + +  L  + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++
Sbjct: 456  SYIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCTSDTPEGEACGLVKNLALMTHIT 515

Query: 531  TSILEPIFEQLFNSGMEKLADDASYS-----LGGKFKVFVDGDWIGVCKDSLSFVSELRR 585
            T++ E   +++  +  E +     Y+       G + + ++G    V ++   F +  R 
Sbjct: 516  TNVPEEPVKKMIFAADESVGPIREYTGTEMHSKGSYIIHLNGTPFAVTREPKRFAARFRT 575

Query: 586  KRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYT 638
             RRR  +   V I  +E  S V I  D GRI RP ++V+N GK       +K L+    T
Sbjct: 576  LRRRGWVSPFVSIHINEHFSAVHIATDEGRICRPYIIVKN-GKSMLKAEHLKMLQLGQAT 634

Query: 639  FQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGII 698
            F   L  G++E +   EE D   A          ED+     TH E++   +LG   G+I
Sbjct: 635  FDTFLTSGVVEYLDVNEENDTLVALQ--------EDQITNSTTHMEIEPFTILGAVAGLI 686

Query: 699  PFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKP 758
            PF +H+ + R  YQ      QAIG    N   R+DTL + L YPQRP+  T     +   
Sbjct: 687  PFPHHNQSPRNTYQC-AMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVITKTIQLI--- 742

Query: 759  GYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVD 818
               H   LP      GQNA V V  + GY+ ED+LV+N+ASL+RG  R +  R Y AE+ 
Sbjct: 743  ---HYDKLPA-----GQNATVVVMSYSGYDIEDALVLNKASLDRGFGRCQVFRKYTAELQ 794

Query: 819  NKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVI----------- 867
                  + R    M +  +    I +   LD DG   +G+ ++SG  +I           
Sbjct: 795  GYTNGRRDRVGGIMKD--EDDKPIAKHAILDADGLAQVGSKVESGQTMIKKETPLDQIST 852

Query: 868  GKYADSGADH----SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSM 923
            G   D G+D     S   + ++  ++ KV++S N+       V  RQ R P LGDKFSS 
Sbjct: 853  GIAGDRGSDDYRDASTNYRISDPAIIDKVMISVNERENKLIKVQTRQTRRPELGDKFSSR 912

Query: 924  HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGIC 983
            HGQKGV+G + ++E+ PF+ +G+ PDI++NPH FPSR T G+L E   GK        + 
Sbjct: 913  HGQKGVVGIIVNEEDMPFSDKGLRPDIIMNPHGFPSRMTVGKLFECLTGKA------SVI 966

Query: 984  SGLKRYA--TPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRL 1041
            +G K Y     F +  V+++ + L   GFS  G +    G TGE + + I+ GP FYQRL
Sbjct: 967  AGEKDYGFGDAFRSHPVESMGQALIDHGFSWEGKDYFTSGITGEPMEAYIYNGPIFYQRL 1026

Query: 1042 IHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLS 1101
             HM +DK+  R+ GP   LTRQP   R R GG++ GEMERDCLIA+GA+  L ERL   S
Sbjct: 1027 KHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMISS 1086

Query: 1102 DSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFS 1161
            D  ++ +C++C            G    +G YC  C S  ++ +  +PY  KLL QEL S
Sbjct: 1087 DGTELDVCQEC------------GLFGYKG-YCNACKSTRNVKQMTMPYACKLLVQELIS 1133

Query: 1162 M--GITLKFDTEF 1172
            M  G+ LK + EF
Sbjct: 1134 MNVGVKLKLEDEF 1146


>gi|449481884|ref|XP_002196633.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Taeniopygia
            guttata]
          Length = 1130

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 368/1184 (31%), Positives = 554/1184 (46%), Gaps = 145/1184 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYASMRFG 89
            +F    GLV   I+S+N FI   ++K        I++     +   +  W  +Y ++  G
Sbjct: 30   AFLKVKGLVKQHIDSFNYFINVEIKK--------IMKANEKVTSDADPMWYLKYLNIYVG 81

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
               +++ SF          + P   RL++MTYS+ + V +++              T   
Sbjct: 82   TPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEY--------------TRGS 121

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
            Q I +  L        IGR+P+M++S  C + G       +  +C  D GGYFI+KG EK
Sbjct: 122  QRIIRNALP-------IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEK 174

Query: 204  VFVAQEQICLKRLWVS----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            V + QEQ+   R+ V      ++G +V   +  K++R    +V       +K G   L  
Sbjct: 175  VILIQEQLSKNRIIVEADRKGTVGASVTSSTHEKKSR--TNMV-------VKQGRFYLRH 225

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
              LS +IPI I+F A+GV SD+EIV +I  T E    +   FA   +   K   F +   
Sbjct: 226  NTLSEDIPIAIIFKAMGVESDQEIVQMIG-TEEH---VMAAFAPSLEECQKAQIFTQ-MQ 280

Query: 320  ALKYVDKLIKGTTF---PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRR 376
            ALKY+   ++       P     EE     L  S   T    +   +  KC+  A   RR
Sbjct: 281  ALKYIGNKVRRQRMWGGPKKTKMEEARE--LLASTILTHVLVKEFNFRAKCIYTAVMVRR 338

Query: 377  --------KCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR-P 427
                    K D+RD + NKRLELAG+LL    +         + K   + +   R  +  
Sbjct: 339  VILAQGENKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSELKKIADQVIPKQRAAQFD 398

Query: 428  IEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQ 487
            +  ++    +TNG+  A STG WS    + +R  G+   L R + +  L  + R   Q +
Sbjct: 399  VVKHMRQDQITNGMVNAISTGNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQFE 457

Query: 488  YTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGM 546
             T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + + PI +   N G+
Sbjct: 458  KTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLASNLGV 517

Query: 547  EKL----ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
            E +     ++ SY     F VF++G+ +GV +D    V+  R  RR   +   V I  + 
Sbjct: 518  EDVNLLCGEELSYP--NVFLVFLNGNILGVIRDHQKLVNTFRILRRAGYINEFVSISTNL 575

Query: 603  LQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHGIIELVGTEEE 656
                V I  D GR+ RP ++V+          ++ L      F+  L  G++E +   EE
Sbjct: 576  SDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHEGLVEYLDVNEE 635

Query: 657  EDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKH 716
             DC  A     + KD         TH E++   LLG+  G+IP+ +H+ + R  YQ    
Sbjct: 636  NDCNIALYENTINKDT--------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-AM 686

Query: 717  SSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQN 776
              QA+G    N   R+DTL + L YPQ+P+ +T   +           ++   +L  GQN
Sbjct: 687  GKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIE-----------LIDFEKLPAGQN 735

Query: 777  AIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFG 836
            A VAV  + GY+ ED+LV+N+ASL+RG  R    ++ K  +     Q   +    M++  
Sbjct: 736  ATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLD-A 794

Query: 837  KIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA----------------DHSIK 880
              +  I R + LD DG    G  +++  +++ K   +                  D  + 
Sbjct: 795  ATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQTPLEGSSVPQQPQYKDVPVT 854

Query: 881  LKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFP 940
             K      ++KV++SSN +      + LRQ R P +GDKFSS HGQKGV G +  QE+ P
Sbjct: 855  YKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMP 914

Query: 941  FTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDA 1000
            F   GI PDI++NPH FPSR T G+L+E   GK       G+  G   Y T F    V  
Sbjct: 915  FCDTGICPDIIMNPHGFPSRMTVGKLIELLAGKA------GVLDGRFHYGTAFGGSKVKD 968

Query: 1001 ITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPL 1060
            + E L R G++  G + +  G TGE + + I+ GP +YQ+L HM  DK+  R  GP   L
Sbjct: 969  VCEDLIRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVL 1028

Query: 1061 TRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQ 1120
            TRQP   R R GG++ GEMERDCLI +GA+  L ERL   SD++++ +C +C        
Sbjct: 1029 TRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQC-------- 1080

Query: 1121 RVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
                 G      +C  C S   +    +PY  KLL QEL SM I
Sbjct: 1081 -----GLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNI 1119


>gi|322784943|gb|EFZ11714.1| hypothetical protein SINV_06174 [Solenopsis invicta]
          Length = 1123

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 356/1193 (29%), Positives = 567/1193 (47%), Gaps = 122/1193 (10%)

Query: 28   KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMR 87
            K   +F  + GLV   I+SYN FI   ++    +  +  ++   DP        +Y +++
Sbjct: 5    KLVKAFLQDKGLVKQHIDSYNYFINEEIKNIVKANEK--IQSDEDP----HFYLKYLNIQ 58

Query: 88   FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
             G+  L            ++D  P   RL+++ YS+ ++V++++      R   D  + G
Sbjct: 59   VGRPKLQDSCTL----NRDYDTTPHECRLRDLNYSAPIEVEIEYV-----RNNPDNKEGG 109

Query: 148  REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM------KGVEKGDCDFDHGGYFIIKGA 201
             +Q   K+V        +IG +P+M++S  C +      +  +  +C  D GGYFII G 
Sbjct: 110  GKQRTWKKV--------VIGMMPIMLRSSNCVLTKKSESQLAKLNECPHDPGGYFIINGQ 161

Query: 202  EKVFVAQEQICLKR--LWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            EKV + QEQ+   R  L V N      A  S     +    +V        K G+  L  
Sbjct: 162  EKVILIQEQMVRNRIVLEVDNKDCVVAACNSFTHDKKTKTNVVG-------KSGKYYLRH 214

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
                 +I I I+F A+G+ SD EI+ ++    +D   L+   AS+ +   +         
Sbjct: 215  NMFQDDILITIIFKAMGIVSDLEIMQMVG--TQD-KYLDKFAASLEECQREDLNIFSQNQ 271

Query: 320  ALKYVDKLIKGTTF--PPGESTEECMNTYLFPSLHGT-------KQKARFLGYMVKCLLQ 370
            ALKY++   K T F  P     +E  +      L          + KA +L  M++ ++ 
Sbjct: 272  ALKYLNSKRKQTRFHVPKSRVADEMKDAIATNILSHVPVIDFNFRPKALYLALMIRRVIN 331

Query: 371  AYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR-PIE 429
            A S R   D++D + NKRLELAG LL    +         + +   +++   +     I 
Sbjct: 332  AQSDRSLIDDKDYYGNKRLELAGSLLALMFEDLFKRFNWELKQIADKNIPKIKAAAFDIA 391

Query: 430  YYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYT 489
             ++   ++TNGL+ A S+G W+    R ER  G+   L R + +  L  + R   Q + T
Sbjct: 392  KHMRHDLITNGLAFAISSGNWTIKRFRMER-HGVTQVLSRLSYISALGMMTRVHSQFEKT 450

Query: 490  GKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEK 548
             KV   R    S WG +C   TP+GE CGLVKNL +   ++T + E P+ + + N G+E 
Sbjct: 451  RKVSGPRSLQGSQWGMLCPNDTPEGEACGLVKNLALMAHITTEVPEKPLIDLMRNLGVED 510

Query: 549  LADDASYSLG--GKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSE 606
            +   A   L   G + VFV+G   G+ ++    V + R  RR   + + V I        
Sbjct: 511  IYTLAGEELTKEGVYTVFVNGIMAGIVQNHKRLVKQFRLLRRAGYINSFVSIYTQHRHKC 570

Query: 607  VRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGIIELVGTEEEEDC 659
            +++  D GR+ RP ++V++ GK       IK LE    TF+  L  G+IE +   EE D 
Sbjct: 571  IQVSSDGGRLCRPCIIVKH-GKSLVKPKHIKDLERNITTFEDFLYDGLIEYLDVNEENDS 629

Query: 660  CTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQ 719
              A     + +D         TH E+    +LG+  G+IP+ +H+ + R  YQ      Q
Sbjct: 630  LIACTESEINEDT--------THLEIAEFAILGVCAGLIPYPHHNQSPRNTYQC-AMGKQ 680

Query: 720  AIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIV 779
            AIG    N   R+DT+ + L Y QRP+ +T   +           ++   +L  G+NAIV
Sbjct: 681  AIGSIGENQRTRIDTVMYNLAYSQRPIVKTRAIE-----------LINYDKLPAGENAIV 729

Query: 780  AVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQ 839
            AV  + GY+ ED+L+ N+AS++RG  R    R+ K  +     Q + R     ++    +
Sbjct: 730  AVMSYSGYDIEDALIFNKASIDRGYGRCLVYRNAKCTLKKYANQTQDRIMGPSID-ANTK 788

Query: 840  SKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH------------------SIKL 881
              + + + LD DG    G  +++  +++ K   + +++                   I+ 
Sbjct: 789  KPLSKHEILDSDGIAAPGELVENKTVMVNKSVPAPSENIGPVRSGNVQTQTEYRNAEIQY 848

Query: 882  KHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPF 941
            K      V+KV++S N +      + LRQ R P +GDKFSS HGQKGV+G +  QE+ PF
Sbjct: 849  KGLVPAYVEKVMISKNAEDAFLVKLLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPF 908

Query: 942  TIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAI 1001
               G+ PDI++NPH FPSR T G+L+E   GK       G+ +G  + AT F    V+ +
Sbjct: 909  NDYGMCPDIIMNPHGFPSRMTVGKLIEVLAGKA------GVVNGKFQDATAFGGAKVEDL 962

Query: 1002 TEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLT 1061
             E+L + G++  G +  Y+G TG  +   I+ GP +YQ+L HM +DK+  R  GP   LT
Sbjct: 963  CEELAKNGYNYLGKDFFYNGMTGRPLIGYIYSGPVYYQKLKHMVQDKIHARARGPRVVLT 1022

Query: 1062 RQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQR 1121
            RQP   R R GG++ GEMERDCLI +GA+  L ERL   SD++++ +C KC         
Sbjct: 1023 RQPTEGRAREGGLRLGEMERDCLIGYGASMLLIERLMISSDAFKVDVCNKC--------- 1073

Query: 1122 VVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFD-TEFC 1173
                G      +C+ C S   +    +PY  KLL QEL SM +  +    E+C
Sbjct: 1074 ----GLIGYNNWCQRCQSSSSVSTITMPYACKLLFQELQSMNVVPRLSLKEYC 1122


>gi|395538371|ref|XP_003771156.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Sarcophilus
            harrisii]
          Length = 1174

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 365/1185 (30%), Positives = 552/1185 (46%), Gaps = 146/1185 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYASMRFG 89
            +F    GLV   I+S+N FI   ++K        I++     +   +  W  +Y ++  G
Sbjct: 73   AFLKVKGLVKQHIDSFNYFINVEIKK--------IMKANEKVTSDADPMWYLKYLNIYVG 124

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
               +++ SF          + P   RL++MTYS+ + V +++              T   
Sbjct: 125  LPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEY--------------TRGS 164

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
            Q I +  L        IGR+P+M++S  C + G       +  +C  D GGYFI+KG EK
Sbjct: 165  QRIIRNALP-------IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEK 217

Query: 204  VFVAQEQICLKRLWVS----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            V + QEQ+   R+ V      ++G +V   +  K++R  +          +K G   L  
Sbjct: 218  VILIQEQLSKNRIIVEADRKGTVGASVTSSTHEKKSRTNIA---------VKQGRFYLRH 268

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
              LS +IPI I+F A+GV SD+EIV +I     +  ++     S+ +   K   F +   
Sbjct: 269  NTLSEDIPIVIIFKAMGVESDQEIVQMIG---TEEHVMAAFGPSLEEC-QKAQIFTQ-MQ 323

Query: 320  ALKYVDKLIKGTTF----PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGR 375
            ALKY+   ++        P     EE     L  S   T    +   +  KC+  A   R
Sbjct: 324  ALKYIGNKVRRQRMWGGGPKKTKMEEARE--LLASTILTHVPVKEFNFRAKCIYTAVMVR 381

Query: 376  R--------KCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR- 426
            R        K D+RD + NKRLELAG+LL    +         M K   + +   R  + 
Sbjct: 382  RVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQF 441

Query: 427  PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
             +  ++    +TNG+  A STG WS    + +R  G+   L R + +  L  + R   Q 
Sbjct: 442  DVVKHMRQDQITNGMVNAISTGNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQF 500

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSG 545
            + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + + PI +   N G
Sbjct: 501  EKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLG 560

Query: 546  MEKL----ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
            +E +     ++ SY     F VF++G+ +GV +D    V+  R  RR   +   V I  +
Sbjct: 561  VEDVNLLCGEELSYP--NVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTN 618

Query: 602  ELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHGIIELVGTEE 655
                 V I  D GR+ RP ++V+          ++ L      F+  L   ++E +   E
Sbjct: 619  LTDRCVYISSDGGRLCRPYIIVKKQKPAVTDKHMEELAQGYRNFEDFLHESLVEYLDVNE 678

Query: 656  EEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQK 715
            E DC  A     + KD         TH E++   LLG+  G+IP+ +H+ + R  YQ   
Sbjct: 679  ENDCNIALYEHTINKDT--------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-A 729

Query: 716  HSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQ 775
               QA+G    N   R+DTL + L YPQ+P+ +T   +           ++   +L  GQ
Sbjct: 730  MGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIE-----------LIDFEKLPAGQ 778

Query: 776  NAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF 835
            NA VAV  + GY+ ED+LV+N+ASL+RG  R    ++ K  +     Q   +    M++ 
Sbjct: 779  NATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLD- 837

Query: 836  GKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA----------------DHSI 879
               +  I R + LD DG    G  +++  +++ K   +                  D  I
Sbjct: 838  AATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSSVPQQPQYKDVPI 897

Query: 880  KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENF 939
              K      ++KV++SSN +      + LRQ R P +GDKFSS HGQKGV G +  QE+ 
Sbjct: 898  TYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDM 957

Query: 940  PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVD 999
            PF   GI PDI++NPH FPSR T G+L+E   GK       G+  G   Y T F    V 
Sbjct: 958  PFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKA------GVLDGKFHYGTAFGGSKVK 1011

Query: 1000 AITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHP 1059
             + E L R G++  G + +  G TGE + + I+ GP +YQ+L HM  DK+  R  GP   
Sbjct: 1012 DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1071

Query: 1060 LTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVI 1119
            LTRQP   R R GG++ GEMERDCLI +GA+  L ERL   SD++++ +C +C       
Sbjct: 1072 LTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQC------- 1124

Query: 1120 QRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
                  G      +C  C S   +    +PY  KLL QEL SM I
Sbjct: 1125 ------GLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNI 1163


>gi|73969955|ref|XP_531760.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Canis lupus
            familiaris]
          Length = 1133

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 366/1185 (30%), Positives = 554/1185 (46%), Gaps = 146/1185 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYASMRFG 89
            +F    GLV   I+S+N FI   ++K        I++     +   +  W  +Y ++  G
Sbjct: 32   AFLKVKGLVKQHIDSFNYFINVEIKK--------IMKANEKVTSDADPMWYLKYLNIYVG 83

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
               +++ SF          + P   RL++MTYS+ + V +++              T   
Sbjct: 84   LPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEY--------------TRGS 123

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
            Q I +  L        IGR+P+M++S  C + G       +  +C  D GGYFI+KG EK
Sbjct: 124  QRIIRNALP-------IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEK 176

Query: 204  VFVAQEQICLKRLWVS----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            V + QEQ+   R+ V      ++G +V   +  K++R      +M+    +K G   L  
Sbjct: 177  VILIQEQLSKNRIIVEADRKGTVGASVTSSTHEKKSR-----TNMA----VKQGRFYLRH 227

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
              LS +IPI I+F A+GV SD+EIV +I     +  ++     S+ +   K   F +   
Sbjct: 228  NTLSEDIPIVIIFKAMGVESDQEIVQMIG---TEEHVMAAFGPSLEEC-QKAQIFTQ-MQ 282

Query: 320  ALKYVDKLIKGTTF----PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGR 375
            ALKY+   ++        P     EE     L  S   T    +   +  KC+  A   R
Sbjct: 283  ALKYIGNKVRRQRMWGGGPKKTKIEEARE--LLASTILTHVPVKEFNFRAKCIYTAVMVR 340

Query: 376  R--------KCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR- 426
            R        K D+RD + NKRLELAG+LL    +         M K   + +   R  + 
Sbjct: 341  RVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQF 400

Query: 427  PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
             +  ++    +TNG+  A STG WS    + +R  G+   L R + +  L  + R   Q 
Sbjct: 401  DVVKHMRQDQITNGMVNAISTGNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQF 459

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSG 545
            + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + + PI +   N G
Sbjct: 460  EKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLG 519

Query: 546  MEKL----ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
            +E +     ++ SY     F VF++G+ +GV +D    V+  R  RR   +   V I  +
Sbjct: 520  VEDVNLLCGEELSYP--NVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTN 577

Query: 602  ELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHGIIELVGTEE 655
                 V I  D GR+ RP ++V+          ++ L      F+  L   ++E +   E
Sbjct: 578  LTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNE 637

Query: 656  EEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQK 715
            E DC  A     + KD         TH E++   LLG+  G+IP+ +H+ + R  YQ   
Sbjct: 638  ENDCNIALYEHTINKDT--------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-A 688

Query: 716  HSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQ 775
               QA+G    N   R+DTL + L YPQ+P+ +T   +           ++   +L  GQ
Sbjct: 689  MGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIE-----------LIEFEKLPAGQ 737

Query: 776  NAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF 835
            NA VAV  + GY+ ED+LV+N+ASL+RG  R    ++ K  +     Q   +    M++ 
Sbjct: 738  NATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLD- 796

Query: 836  GKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA----------------DHSI 879
               +  I R + LD DG    G  +++  +++ K   +                  D  I
Sbjct: 797  AATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPI 856

Query: 880  KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENF 939
              K      ++KV++SSN +      + LRQ R P +GDKFSS HGQKGV G +  QE+ 
Sbjct: 857  TYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDM 916

Query: 940  PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVD 999
            PF   GI PDI++NPH FPSR T G+L+E   GK       G+  G   Y T F    V 
Sbjct: 917  PFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKA------GVLDGRFHYGTAFGGSKVK 970

Query: 1000 AITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHP 1059
             + E L R G++  G + +  G TGE + + I+ GP +YQ+L HM  DK+  R  GP   
Sbjct: 971  DVCEDLVRHGYNYLGKDFVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030

Query: 1060 LTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVI 1119
            LTRQP   R R GG++ GEMERDCLI +GA+  L ERL   SD++++ +C +C       
Sbjct: 1031 LTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQC------- 1083

Query: 1120 QRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
                  G      +C  C S   +    +PY  KLL QEL SM I
Sbjct: 1084 ------GLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNI 1122


>gi|356495051|ref|XP_003516394.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Glycine
            max]
          Length = 1166

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 356/1192 (29%), Positives = 563/1192 (47%), Gaps = 140/1192 (11%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
            F    GLV   ++S+N F++  ++K   +    +              + +  +RF  V 
Sbjct: 54   FLKVRGLVKQHLDSFNYFVRTDIKKIVRANNLIMAS-----------RYPHIYLRFLNVG 102

Query: 93   LDKPSFFAGNGGDE--HDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
            + KPS       DE    + P+  RL ++TY++ +   V++ + +  +  + +       
Sbjct: 103  IGKPSMMI----DEVTEGLTPQTCRLSDLTYAAPICADVEYTLRSHDKPDNKR------- 151

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKV 204
                      T  + IGR+P+M++S  C + G ++      G+C  D GGYF+IKG EKV
Sbjct: 152  ----------TLRVEIGRMPIMLRSCCCVLHGKDEAELAKLGECPLDPGGYFVIKGTEKV 201

Query: 205  FVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLST 264
             + QEQ+   R+ +       +     +   ++  + V + + E +      L +     
Sbjct: 202  ILIQEQLSKNRIIIDTDKKGNITASVTSSTEKIKTKTVIVMENEKL-----WLQLNKFPK 256

Query: 265  EIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYV 324
            ++P+ ++  A+G+ SD+E++ ++     D     +L  SI +   KC  + K   AL+Y+
Sbjct: 257  KVPLMVVMKAMGMESDQEVIQMVG---RDPRYSFLLLPSIEEC-RKCKVYTK-EQALEYL 311

Query: 325  DKLIKGTTFPPGESTEECMNTYLFPSLHGT------------KQKARFLGYMVKCLLQAY 372
            DKL+K  T+    + +E      F +L               ++K  ++  M++ ++ A 
Sbjct: 312  DKLVKRPTYSSNSAEKE---GAAFSALRDVFLANVPVDQDNFQKKCIYVAVMMRRIMDAI 368

Query: 373  SGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDRTVRPI 428
              +   D++D   NKRLEL+G+L+    E   K      +    K L +           
Sbjct: 369  LNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKSMTTEVKNLTDKMLDKPDKAKNFDICT 428

Query: 429  EYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQY 488
                  SI+T GL R  STG +     R ER  G+   L R + +  L  + R   Q + 
Sbjct: 429  LLTRTRSIITLGLERTLSTGNFEIKRFRMER-KGMTQVLQRLSFIGALGHMTRVSPQFEK 487

Query: 489  TGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFNS---- 544
            + KV   R   PS WG +C   TP+GE+CGLVKNL +   V+T   E     LF S    
Sbjct: 488  SRKVSGPRALQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTTDEEEKPLISLFYSLDVA 547

Query: 545  GMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQ 604
             +E L  +  ++    F V  +G  +G  +  L F + +R+ RR  E+   V +  +E Q
Sbjct: 548  RIEHLFAEELHT-PDSFLVIFNGLILGKHRRPLHFATRIRKLRRAGEIGEFVSVYVNEKQ 606

Query: 605  SEVRIFMDAGRILRPLLVVEN-MGKIKSLEGKNY-----TFQALLDHGIIELVGTEEEED 658
              V +  D GR+ RPL++ +  + +IK    K       TF   L  G++E +   EE +
Sbjct: 607  HCVYLASDGGRVCRPLVIADKGISRIKQHHMKELMDGVCTFDDFLRDGLLEYLDVNEENN 666

Query: 659  CCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSS 718
               A          E     + TH E++   +LG+  G+IP+ +H+ + R  YQ      
Sbjct: 667  ALIAL--------YEGDATSETTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCA-MGK 717

Query: 719  QAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAI 778
            QA+G    N   R+D+L + L YPQRPL  T   + +G    G            GQNA 
Sbjct: 718  QAMGNIAFNQLRRMDSLLYLLVYPQRPLLTTKTIELVGYDKLGA-----------GQNAT 766

Query: 779  VAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKI 838
            VAV  + GY+ ED++VMN+ASL+RG  R   ++ Y A +          +SD ++   + 
Sbjct: 767  VAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMKKYNAIIQKHS----NDTSDRILRPNRT 822

Query: 839  QSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD---------SGAD--------HSIKL 881
                GR+  LDDDG    G  L+  DI I K +          S A+        ++   
Sbjct: 823  ADTAGRMQILDDDGIAAPGEILRPYDIYINKQSPIDTRTPKTGSAANLPDSAYRSNAQSF 882

Query: 882  KHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPF 941
            K     +V +VVL S+ D        +R  R P LGDKFSS HGQKGV G +  QE+FPF
Sbjct: 883  KGNGGEVVDRVVLCSDKDNNMCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVPQEDFPF 942

Query: 942  TIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPS---- 997
            + +GI PD+++NPH FPSR T G+++E   GK       G+  G   Y + F   S    
Sbjct: 943  SEKGICPDLIMNPHGFPSRMTVGKMIELLGGKA------GVSCGRFHYGSAFGERSGHAD 996

Query: 998  -VDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGP 1056
             V+ I+E L   GF+  G + +Y G TG  +++ IF+GP +YQ+L HM  DK+  R +GP
Sbjct: 997  KVETISETLVSKGFNYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGP 1056

Query: 1057 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVA 1116
               LTRQP   R R GG++ GEMERDCLIA+GA+  ++ERL   SD +++ +C  C  + 
Sbjct: 1057 RVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIYERLMLSSDPFEVQVCTACGLLG 1116

Query: 1117 NVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
                       K++   C  C +GD+I    +PY  KL+ QEL SM I  + 
Sbjct: 1117 YY-------NHKLKTGICSSCKNGDNISTMKLPYACKLMIQELQSMNIVPRL 1161


>gi|395819924|ref|XP_003783328.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Otolemur
            garnettii]
          Length = 1133

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 366/1185 (30%), Positives = 554/1185 (46%), Gaps = 146/1185 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYASMRFG 89
            +F    GLV   I+S+N FI   ++K        I++     +   +  W  +Y ++  G
Sbjct: 32   AFLKVKGLVKQHIDSFNYFINVEIKK--------IMKANEKVTSDADPMWYLKYLNIYVG 83

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
               +++ SF          + P   RL++MTYS+ + V +++              T   
Sbjct: 84   LPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEY--------------TRGS 123

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
            Q I +  L        IGR+P+M++S  C + G       +  +C  D GGYFI+KG EK
Sbjct: 124  QRIIRNALP-------IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEK 176

Query: 204  VFVAQEQICLKRLWVS----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            V + QEQ+   R+ V      ++G +V   +  K++R      +M+    +K G   L  
Sbjct: 177  VILIQEQLSKNRIIVEADRKGAVGASVTSSTHEKKSR-----TNMA----VKQGRFYLRH 227

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
              LS +IPI I+F A+GV SD+EIV +I     +  ++     S+ +   K   F +   
Sbjct: 228  NTLSEDIPIVIIFKAMGVESDQEIVQMIG---TEEHVIAAFGPSLEEC-QKAQIFTQ-MQ 282

Query: 320  ALKYVDKLIKGTTF----PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGR 375
            ALKY+   ++        P     EE     L  S   T    +   +  KC+  A   R
Sbjct: 283  ALKYIGNKVRRQRMWGGGPKKTKIEEARE--LLASTILTHVPVKEFNFRAKCIYTAVMVR 340

Query: 376  R--------KCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR- 426
            R        K D+RD + NKRLELAG+LL    +         M K   + +   R  + 
Sbjct: 341  RVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQF 400

Query: 427  PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
             +  ++    +TNG+  A STG WS    + +R  G+   L R + +  L  + R   Q 
Sbjct: 401  DVVKHMRQDQITNGMVNAISTGNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQF 459

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSG 545
            + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + + PI +   N G
Sbjct: 460  EKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLG 519

Query: 546  MEKL----ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
            +E +     ++ SY     F VF++G+ +GV +D    V+  R  RR   +   V I  +
Sbjct: 520  VEDVNLLCGEELSYP--NVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTN 577

Query: 602  ELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHGIIELVGTEE 655
                 V I  D GR+ RP ++V+          ++ L      F+  L   ++E +   E
Sbjct: 578  LTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNE 637

Query: 656  EEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQK 715
            E DC  A     + KD         TH E++   LLG+  G+IP+ +H+ + R  YQ   
Sbjct: 638  ENDCNIALYEHTINKDT--------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-A 688

Query: 716  HSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQ 775
               QA+G    N   R+DTL + L YPQ+P+ +T   +           ++   +L  GQ
Sbjct: 689  MGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIE-----------LIEFEKLPAGQ 737

Query: 776  NAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF 835
            NA VAV  + GY+ ED+LV+N+ASL+RG  R    ++ K  +     Q   +    M++ 
Sbjct: 738  NATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLD- 796

Query: 836  GKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA----------------DHSI 879
               +  I R + LD DG    G  +++  +++ K   +                  D  I
Sbjct: 797  AATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPI 856

Query: 880  KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENF 939
              K      ++KV++SSN +      + LRQ R P +GDKFSS HGQKGV G +  QE+ 
Sbjct: 857  TYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDM 916

Query: 940  PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVD 999
            PF   GI PDI++NPH FPSR T G+L+E   GK       G+  G   Y T F    V 
Sbjct: 917  PFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKA------GVLDGRFHYGTAFGGSKVK 970

Query: 1000 AITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHP 1059
             + E L R G++  G + +  G TGE + + I+ GP +YQ+L HM  DK+  R  GP   
Sbjct: 971  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030

Query: 1060 LTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVI 1119
            LTRQP   R R GG++ GEMERDCLI +GA+  L ERL   SD++++ +C +C       
Sbjct: 1031 LTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQC------- 1083

Query: 1120 QRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
                  G      +C  C S   +    +PY  KLL QEL SM I
Sbjct: 1084 ------GLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNI 1122


>gi|449276422|gb|EMC84954.1| DNA-directed RNA polymerase III subunit RPC2, partial [Columba livia]
          Length = 1105

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 368/1183 (31%), Positives = 553/1183 (46%), Gaps = 145/1183 (12%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYASMRFGQ 90
             F   GLV   I+S+N FI   ++K        I++     +   +  W  +Y ++  G 
Sbjct: 6    IFQVKGLVKQHIDSFNYFINVEIKK--------IMKANEKVTSDADPMWYLKYLNIYVGT 57

Query: 91   VTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
              +++ SF          + P   RL++MTYS+ + V +++              T   Q
Sbjct: 58   PDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEY--------------TRGSQ 97

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKV 204
             I +  L        IGR+P+M++S  C + G       +  +C  D GGYFI+KG EKV
Sbjct: 98   RIIRNALP-------IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKV 150

Query: 205  FVAQEQICLKRLWVS----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVY 260
             + QEQ+   R+ V      ++G +V   +  K++R    +V       +K G   L   
Sbjct: 151  ILIQEQLSKNRIIVEADRKGTVGASVTSSTHEKKSR--TNMV-------VKQGRFYLRHN 201

Query: 261  FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNA 320
             LS +IPI I+F A+GV SD+EIV +I  T E    +   FA   +   K   F +   A
Sbjct: 202  TLSEDIPIAIIFKAMGVESDQEIVQMIG-TEEH---VMAAFAPSLEECQKAQIFTQ-MQA 256

Query: 321  LKYVDKLIKGTTF---PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRR- 376
            LKY+   ++       P     EE     L  S   T    +   +  KC+  A   RR 
Sbjct: 257  LKYIGNKVRRQRMWGGPKKTKMEEARE--LLASTILTHVLVKEFNFRAKCIYTAVMVRRV 314

Query: 377  -------KCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR-PI 428
                   K D+RD + NKRLELAG+LL    +         + K   + +   R  +  +
Sbjct: 315  ILAQGENKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSELKKIADQVIPKQRAAQFDV 374

Query: 429  EYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQY 488
              ++    +TNG+  A STG WS    + +R  G+   L R + +  L  + R   Q + 
Sbjct: 375  VKHMRQDQITNGMVNAISTGNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQFEK 433

Query: 489  TGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGME 547
            T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + + PI +   N G+E
Sbjct: 434  TRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLASNLGVE 493

Query: 548  KL----ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDEL 603
             +     ++ SY     F VF++G+ +GV +D    V+  R  RR   +   V I  +  
Sbjct: 494  DVNLLCGEELSYP--NVFLVFLNGNILGVIRDHQKLVNTFRIMRRAGYINEFVSISTNLS 551

Query: 604  QSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHGIIELVGTEEEE 657
               V I  D GR+ RP ++V+          ++ L      F+  L  G++E +   EE 
Sbjct: 552  DRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHEGLVEYLDVNEEN 611

Query: 658  DCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHS 717
            DC  A     + KD         TH E++   LLG+  G+IP+ +H+ + R  YQ     
Sbjct: 612  DCSIALYEHTINKDT--------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-AMG 662

Query: 718  SQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNA 777
             QA+G    N   R+DTL + L YPQ+P+ +T   +           ++   +L  GQNA
Sbjct: 663  KQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIE-----------LIDFEKLPAGQNA 711

Query: 778  IVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK 837
             VAV  + GY+ ED+LV+N+ASL+RG  R    ++ K  +     Q   +    M++   
Sbjct: 712  TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLD-AA 770

Query: 838  IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA----------------DHSIKL 881
             +  I R + LD DG    G  +++  +++ K   +                  D  +  
Sbjct: 771  TRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQTPLEGSNVPQQPQYKDVPVTY 830

Query: 882  KHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPF 941
            K      ++KV++SSN +      + LRQ R P +GDKFSS HGQKGV G +  QE+ PF
Sbjct: 831  KGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPF 890

Query: 942  TIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAI 1001
               GI PDI++NPH FPSR T G+L+E   GK       G+  G   Y T F    V  +
Sbjct: 891  CDTGICPDIIMNPHGFPSRMTVGKLIELLAGKA------GVLDGRFHYGTAFGGSKVKDV 944

Query: 1002 TEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLT 1061
             E L R G++  G + +  G TGE + + I+ GP +YQ+L HM  DK+  R  GP   LT
Sbjct: 945  CEDLIRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLT 1004

Query: 1062 RQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQR 1121
            RQP   R R GG++ GEMERDCLI +GA+  L ERL   SD++++ +C +C         
Sbjct: 1005 RQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQC--------- 1055

Query: 1122 VVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
                G      +C  C S   +    +PY  KLL QEL SM I
Sbjct: 1056 ----GLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNI 1094


>gi|363727935|ref|XP_416307.3| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Gallus
            gallus]
          Length = 1132

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 368/1184 (31%), Positives = 554/1184 (46%), Gaps = 145/1184 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYASMRFG 89
            +F    GLV   I+S+N FI   ++K        I++     +   +  W  +Y ++  G
Sbjct: 32   AFLKVKGLVKQHIDSFNYFINVEIKK--------IMKANEKVTSDADPMWYLKYLNIYVG 83

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
               +++ SF          + P   RL++MTYS+ + V +++              T   
Sbjct: 84   TPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEY--------------TRGS 123

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
            Q I +  L        IGR+P+M++S  C + G       +  +C  D GGYFI+KG EK
Sbjct: 124  QRIIRNALP-------IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEK 176

Query: 204  VFVAQEQICLKRLWVS----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            V + QEQ+   R+ V      ++G +V   +  K++R    +V       +K G   L  
Sbjct: 177  VILIQEQLSKNRIIVEADRKGTVGASVTSSTHEKKSR--TNMV-------VKQGRFYLRH 227

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
              LS +IPI I+F A+GV SD+EIV +I  T E    +   FA   +   K   F +   
Sbjct: 228  NTLSEDIPIAIIFKAMGVESDQEIVQMIG-TEEH---VMAAFAPSLEECQKAQIFTQ-MQ 282

Query: 320  ALKYVDKLIKGTTF---PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRR 376
            ALKY+   ++       P     EE     L  S   T    +   +  KC+  A   RR
Sbjct: 283  ALKYIGNKVRRQRMWGGPKKTKMEEARE--LLASTILTHVLVKEFNFRAKCIYTAVMVRR 340

Query: 377  --------KCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR-P 427
                    K D+RD + NKRLELAG+LL    +         + K   + +   R  +  
Sbjct: 341  VILAQGENKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSELKKIADQVIPKQRAAQFD 400

Query: 428  IEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQ 487
            +  ++    +TNG+  A STG WS    + +R  G+   L R + +  L  + R   Q +
Sbjct: 401  VVKHMRQDQITNGMVNAISTGNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQFE 459

Query: 488  YTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGM 546
             T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + + PI +   N G+
Sbjct: 460  KTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLASNLGV 519

Query: 547  EKL----ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
            E +     ++ SY     F VF++G+ +GV +D    V+  R  RR   +   V I  + 
Sbjct: 520  EDVNLLCGEELSYP--NVFLVFLNGNILGVIRDHQKLVNTFRIMRRAGYINEFVSISTNL 577

Query: 603  LQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHGIIELVGTEEE 656
                V I  D GR+ RP ++V+          ++ L      F+  L  G++E +   EE
Sbjct: 578  SDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHEGLVEYLDVNEE 637

Query: 657  EDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKH 716
             DC  A     + KD         TH E++   LLG+  G+IP+ +H+ + R  YQ    
Sbjct: 638  NDCNIALYEHTINKDT--------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-AM 688

Query: 717  SSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQN 776
              QA+G    N   R+DTL + L YPQ+P+ +T   +           ++   +L  GQN
Sbjct: 689  GKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIE-----------LIDFEKLPAGQN 737

Query: 777  AIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFG 836
            A VAV  + GY+ ED+LV+N+ASL+RG  R    ++ K  +     Q   +    M++  
Sbjct: 738  ATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLD-A 796

Query: 837  KIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA----------------DHSIK 880
              +  I R + LD DG    G  +++  +++ K   +                  D  + 
Sbjct: 797  ATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQTPLEGSSVPQQPQYKDVPVT 856

Query: 881  LKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFP 940
             K      ++KV++SSN +      + LRQ R P +GDKFSS HGQKGV G +  QE+ P
Sbjct: 857  YKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMP 916

Query: 941  FTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDA 1000
            F   GI PDI++NPH FPSR T G+L+E   GK       G+  G   Y T F    V  
Sbjct: 917  FCDTGICPDIIMNPHGFPSRMTVGKLIELLAGKA------GVLDGRFHYGTAFGGSKVKD 970

Query: 1001 ITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPL 1060
            + E L R G++  G + +  G TGE + + I+ GP +YQ+L HM  DK+  R  GP   L
Sbjct: 971  VCEDLIRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVL 1030

Query: 1061 TRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQ 1120
            TRQP   R R GG++ GEMERDCLI +GA+  L ERL   SD++++ +C +C        
Sbjct: 1031 TRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQC-------- 1082

Query: 1121 RVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
                 G      +C  C S   +    +PY  KLL QEL SM I
Sbjct: 1083 -----GLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNI 1121


>gi|126339649|ref|XP_001365927.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Monodelphis
            domestica]
          Length = 1133

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 365/1185 (30%), Positives = 551/1185 (46%), Gaps = 146/1185 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYASMRFG 89
            +F    GLV   I+S+N FI   ++K        I++     +   +  W  +Y ++  G
Sbjct: 32   AFLKVKGLVKQHIDSFNYFINVEIKK--------IMKANEKVTSDADPMWYLKYLNIYVG 83

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
               +++ SF          + P   RL++MTYS+ + V +++              T   
Sbjct: 84   LPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEY--------------TRGS 123

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
            Q I +  L        IGR+P+M++S  C + G       +  +C  D GGYFI+KG EK
Sbjct: 124  QRIIRNALP-------IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEK 176

Query: 204  VFVAQEQICLKRLWVS----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            V + QEQ+   R+ V      ++G +V   +  K++R  +          +K G   L  
Sbjct: 177  VILIQEQLSKNRIIVEADRKGTVGASVTSSTHEKKSRTNIA---------VKQGRFYLRH 227

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
              LS +IPI I+F A+GV SD+EIV +I     +  ++     S+ +   K   F +   
Sbjct: 228  NTLSEDIPIVIIFKAMGVESDQEIVQMIG---TEEHVMAAFGPSLEEC-QKAQIFTQ-MQ 282

Query: 320  ALKYVDKLIKGTTF----PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGR 375
            ALKY+   ++        P     EE     L  S   T    +   +  KC+  A   R
Sbjct: 283  ALKYIGNKVRRQRMWGGGPKKTKMEEARE--LLASTILTHVPVKEFNFRAKCIYTAVMVR 340

Query: 376  R--------KCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR- 426
            R        K D+RD + NKRLELAG+LL    +         M K   + +   R  + 
Sbjct: 341  RVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQF 400

Query: 427  PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
             +  ++    +TNG+  A STG WS    + +R  G+   L R + +  L  + R   Q 
Sbjct: 401  DVVKHMRQDQITNGMVNAISTGNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQF 459

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSG 545
            + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + + PI +   N G
Sbjct: 460  EKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLG 519

Query: 546  MEKL----ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
            +E +     ++ SY     F VF++G+ +GV +D    V+  R  RR   +   V I  +
Sbjct: 520  VEDVNLLCGEELSYP--NVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTN 577

Query: 602  ELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHGIIELVGTEE 655
                 V I  D GR+ RP ++V+          +  L      F+  L   ++E +   E
Sbjct: 578  LTDRCVYISSDGGRLCRPYIIVKKQKPAVTEKHMDELAQGYRNFEDFLHESLVEYLDVNE 637

Query: 656  EEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQK 715
            E DC  A     + KD         TH E++   LLG+  G+IP+ +H+ + R  YQ   
Sbjct: 638  ENDCNIALYEHTINKDT--------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-A 688

Query: 716  HSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQ 775
               QA+G    N   R+DTL + L YPQ+P+ +T   +           ++   +L  GQ
Sbjct: 689  MGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIE-----------LIEFEKLPAGQ 737

Query: 776  NAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF 835
            NA VAV  + GY+ ED+LV+N+ASL+RG  R    ++ K  +     Q   +    M++ 
Sbjct: 738  NATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLD- 796

Query: 836  GKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA----------------DHSI 879
               +  I R + LD DG    G  +++  +++ K   +                  D  I
Sbjct: 797  AATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSSVPQQPQYKDVPI 856

Query: 880  KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENF 939
              K      ++KV++SSN +      + LRQ R P +GDKFSS HGQKGV G +  QE+ 
Sbjct: 857  TYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDM 916

Query: 940  PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVD 999
            PF   GI PDI++NPH FPSR T G+L+E   GK       G+  G   Y T F    V 
Sbjct: 917  PFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKA------GVLDGKFHYGTAFGGSKVK 970

Query: 1000 AITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHP 1059
             + E L R G++  G + +  G TGE + + I+ GP +YQ+L HM  DK+  R  GP   
Sbjct: 971  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030

Query: 1060 LTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVI 1119
            LTRQP   R R GG++ GEMERDCLI +GA+  L ERL   SD++++ +C +C       
Sbjct: 1031 LTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQC------- 1083

Query: 1120 QRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
                  G      +C  C S   +    +PY  KLL QEL SM I
Sbjct: 1084 ------GLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNI 1122


>gi|73852908|ref|YP_294192.1| putative DNA-directed RNA polymerase II subunit [Emiliania huxleyi
            virus 86]
 gi|72415624|emb|CAI65861.1| putative DNA-directed RNA polymerase II subunit [Emiliania huxleyi
            virus 86]
          Length = 1156

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 366/1209 (30%), Positives = 569/1209 (47%), Gaps = 141/1209 (11%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
            + N    V+HQI SY+ FI+N L          I+  G D S           + F   +
Sbjct: 16   YINSVSPVAHQIESYDHFIENQLPY--------IISEGSDISYMHSSGKVSHHVHFTNPS 67

Query: 93   LDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYI 152
            +++P+    +G  +  + P  ARL+ +TYSS + V V        R+            I
Sbjct: 68   VNRPAIQESDGFYK-PITPHIARLRGLTYSSTVVVDV-----IHDRI---NHTVSPPTLI 118

Query: 153  QKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD---------CDFDHGGYFIIKGAEK 203
             ++V      N+II +IPVMV+S LC++  V + D         C  D GGYFII G EK
Sbjct: 119  NRKVFR----NVIIAQIPVMVRSKLCYLADVSENDLSADAKKHECKVDPGGYFIISGNEK 174

Query: 204  VFVAQEQICLKRLWVSNS-----MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVL- 257
              + Q +I    +++  S       +T   +S ++        + M+   DI  GE  + 
Sbjct: 175  TLIPQTKIRTNHVFIFPSKHGEKHKYTAEVRSCHEAKLRSTSTIYMN-INDISNGEVPVI 233

Query: 258  --SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDC-SILNILFASIHDADNKCDEF 314
               + FL + + ++ILF  LG  S  +I+N I    +D  +IL I+     D+D K +  
Sbjct: 234  TCKLPFLKSNLSVFILFRMLGAESTDDIINYIGNIPKDTEAILRIML----DSDTKQNYS 289

Query: 315  RK------GRNAL------------KYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQ 356
            R       GRN              KY+D +I     P         +  L  +    K+
Sbjct: 290  RDAIMDWVGRNVTSDTTRATKESREKYIDHIITSELAP---------HMGLVNNPETNKK 340

Query: 357  KARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHI-AHARKRMAKAL 415
            K  F+G+M++ L+   +G+   D+RDDF NKR++ AG LL   L+ H   +A + ++  L
Sbjct: 341  KMIFIGHMIQRLMSVATGQEVVDDRDDFINKRIDSAGALLALLLRQHHRGNAMQGLSTQL 400

Query: 416  QRDLYGDRTVR-PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERI-----SGIVANLGR 469
            ++ +   R     +   +    +T+GL  AF+TG W     R         +G+V  L R
Sbjct: 401  RKQVESPREATFNVGEIVSHKKITSGLKFAFATGTWG--ISRGGGTANGGQTGVVQILPR 458

Query: 470  ANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLV 529
               + TL   R+    +   G+    R  HPS WG +C   TP+G+ CGLV NL +T  +
Sbjct: 459  LTTMATLGASRKINTPIAREGRTAGPRMLHPSSWGLVCCSDTPEGQACGLVSNLAITTRI 518

Query: 530  ST-SILEPIFEQLFN-SGMEKLADDASYSLGGKFKVFVDGDWIG--VCKDSL-SFVSELR 584
               + ++PI   L        ++   S+     + + V+G  +G  +  D +    +++R
Sbjct: 519  RIGAPMQPIAILLMTLDHTIDISTATSHERYIGYALHVNGTIVGYAITIDQIKEIATQMR 578

Query: 585  RKRRRKELPTQVEIKRDELQSEVRIFM--DAGRILRPLLVVENMGKIKSLEGKNYT---- 638
              RR   LP    I    + ++  +F+  D G +LRPL++ +       +  +N      
Sbjct: 579  SLRRHGNLPFDCSIS---ISNDNSLFVNSDHGALLRPLIIRDRYHDFVCMAMQNPAVVPN 635

Query: 639  -FQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGI 697
             +  +L  GIIE + + E+    T   +     DIE  +   +TH E+  + L G+    
Sbjct: 636  KYTRMLREGIIEYIDSAEQ----TNMRVAIHHTDIEQDE---YTHIEIHPALLTGICVSQ 688

Query: 698  IPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGK 757
            IPF +H+ + R+ YQ+ +   QAIG  TTN + R+DT+ H L  PQ+PL  T + + LG 
Sbjct: 689  IPFCDHNQSPRIAYQAAQ-CKQAIGLYTTNFAERLDTVGHVLATPQKPLVTTRLEELLGT 747

Query: 758  PGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEV 817
                         + +G   IVA+  + G+NQ+DS+++N++S++RG+F S    + + E 
Sbjct: 748  S-----------VVRSGAVPIVAIMCYSGFNQDDSVLLNQSSIDRGLFTSFAYHTIRDEE 796

Query: 818  DNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA------ 871
                  ++R  +   +  G    K      +DD G P IG    +GD++IGK        
Sbjct: 797  KGTGADIERFENPKNIP-GCSGMKEADYSKIDDKGMPIIGKTFYNGDVLIGKVVSMSLLQ 855

Query: 872  ----------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFS 921
                      D+  D S  L+  E  +V  V LS   +G  +  V  R +R P +GDKFS
Sbjct: 856  ADPKEGEVRRDTKRDRSHVLRTDEPVVVDAVFLSKTPEGHGYVKVRTRAIRIPMVGDKFS 915

Query: 922  SMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKG 981
            + HGQKGV G      +FP T  G+ PDI+INPHA PSR T G L+E  L K +A     
Sbjct: 916  ARHGQKGVCGVTMPAADFPCTADGVAPDIIINPHAIPSRMTIGMLMEMVLSK-VACY--- 971

Query: 982  ICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRL 1041
               G  +  TPF   +++ I ++L   G  ++G E LY+G +GEM+ S+IFI P +YQRL
Sbjct: 972  --EGETQDGTPFTGNNIELIADRLETHGMQRYGNEMLYNGMSGEMLESMIFIAPCYYQRL 1029

Query: 1042 IHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLS 1101
             HM  DK   RN G    LTR P   R R GG++ GEME+D +I+HGA     +RLF  S
Sbjct: 1030 KHMVVDKSHARNRGAQQLLTRAPTEGRSRDGGLRIGEMEKDSIISHGAGDVAKDRLFEQS 1089

Query: 1102 DSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFS 1161
            D ++   C KC + A   +       K  G +C  C +G       +PY  KLL QEL +
Sbjct: 1090 DIFECVACEKCGHFAR--EGTDDTSVKNSGMWCEHCKTGKHCTHTQLPYSMKLLIQELAA 1147

Query: 1162 MGI--TLKF 1168
              I  TL+F
Sbjct: 1148 AHISATLEF 1156


>gi|410965427|ref|XP_003989249.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
            subunit RPC2 [Felis catus]
          Length = 1133

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 366/1185 (30%), Positives = 553/1185 (46%), Gaps = 146/1185 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYASMRFG 89
            +F    GLV   I+S+N FI   ++K        I++     +   +  W  +Y ++  G
Sbjct: 32   AFLKVKGLVKQHIDSFNYFINVEIKK--------IMKANEKVTSDADPMWYLKYLNIYVG 83

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
               +++ SF          + P   RL++MTYS+ + V +++              T   
Sbjct: 84   LPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEY--------------TRGS 123

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
            Q I +  L        IGR+P+M++S  C + G       +  +C  D GGYFI+KG EK
Sbjct: 124  QRIIRNALP-------IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEK 176

Query: 204  VFVAQEQICLKRLWVS----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            V + QEQ+   R+ V      ++G +V   +  K+ R      +M+    +K G   L  
Sbjct: 177  VILIQEQLSKNRIIVEADRKGAVGASVTSSTHEKKXR-----TNMA----VKQGRFYLRH 227

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
              LS +IPI I+F A+GV SD+EIV +I     +  ++     S+ +   K   F +   
Sbjct: 228  NTLSEDIPIVIIFKAMGVESDQEIVQMIG---TEEHVMAAFGPSLEEC-QKAQIFTQ-MQ 282

Query: 320  ALKYVDKLIKGTTF----PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGR 375
            ALKY+   ++        P     EE     L  S   T    +   +  KC+  A   R
Sbjct: 283  ALKYIGNKVRRQRMWGGGPKKTKIEEARE--LLASTILTHVPVKEFNFRAKCIYTAVMVR 340

Query: 376  R--------KCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR- 426
            R        K D+RD + NKRLELAG+LL    +         M K   + +   R  + 
Sbjct: 341  RVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQF 400

Query: 427  PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
             +  ++    +TNG+  A STG WS    + +R  G+   L R + +  L  + R   Q 
Sbjct: 401  DVVKHMRQDQITNGMVNAISTGNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQF 459

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSG 545
            + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + + PI +   N G
Sbjct: 460  EKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLG 519

Query: 546  MEKL----ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
            +E +     ++ SY     F VF++G+ +GV +D    V+  R  RR   +   V I  +
Sbjct: 520  VEDVNLLCGEELSYP--NVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYVNEFVSISTN 577

Query: 602  ELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHGIIELVGTEE 655
                 V I  D GR+ RP ++V+          ++ L      F+  L   ++E +   E
Sbjct: 578  LTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNE 637

Query: 656  EEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQK 715
            E DC  A     + KD         TH E++   LLG+  G+IP+ +H+ + R  YQ   
Sbjct: 638  ENDCNIALYEHTINKDT--------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-A 688

Query: 716  HSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQ 775
               QA+G    N   R+DTL + L YPQ+P+ +T   +           ++   +L  GQ
Sbjct: 689  MGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIE-----------LIEFEKLPAGQ 737

Query: 776  NAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF 835
            NA VAV  + GY+ ED+LV+N+ASL+RG  R    ++ K  +     Q   +    M++ 
Sbjct: 738  NATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLD- 796

Query: 836  GKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA----------------DHSI 879
               +  I R + LD DG    G  +++  +++ K   +                  D  I
Sbjct: 797  AATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPI 856

Query: 880  KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENF 939
              K      ++KV++SSN +      + LRQ R P +GDKFSS HGQKGV G +  QE+ 
Sbjct: 857  TYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDM 916

Query: 940  PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVD 999
            PF   GI PDI++NPH FPSR T G+L+E   GK       G+  G   Y T F    V 
Sbjct: 917  PFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKA------GVLDGRFHYGTAFGGSKVK 970

Query: 1000 AITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHP 1059
             + E L R G++  G + +  G TGE + + I+ GP +YQ+L HM  DK+  R  GP   
Sbjct: 971  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030

Query: 1060 LTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVI 1119
            LTRQP   R R GG++ GEMERDCLI +GA+  L ERL   SD++++ +C +C       
Sbjct: 1031 LTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQC------- 1083

Query: 1120 QRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
                  G      +C  C S   +    +PY  KLL QEL SM I
Sbjct: 1084 ------GLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNI 1122


>gi|345326788|ref|XP_001508364.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC2
            [Ornithorhynchus anatinus]
          Length = 1112

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 366/1185 (30%), Positives = 554/1185 (46%), Gaps = 146/1185 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYASMRFG 89
            +F    GLV   I+S+N FI   ++K        I++     +   +  W  +Y ++  G
Sbjct: 11   AFLKVKGLVKQHIDSFNYFINVEIKK--------IMKANEKVTSDADPMWYLKYLNIYVG 62

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
               +++ SF          + P   RL++MTYS+ + V +++              T   
Sbjct: 63   LPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEY--------------TRGS 102

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
            Q I +  L        IGR+P+M++S  C + G       +  +C  D GGYFI+KG EK
Sbjct: 103  QRIIRNALP-------IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEK 155

Query: 204  VFVAQEQICLKRLWVS----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            V + QEQ+   R+ V      ++G +V   +  K++R      +M+    +K G   L  
Sbjct: 156  VILIQEQLSKNRIIVEADRKGAVGASVTSSTHEKKSR-----TNMA----VKQGRFYLRH 206

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
              LS +IPI I+F A+GV SD+EIV +I     +  ++     S+ +   K   F +   
Sbjct: 207  NTLSEDIPIAIIFKAMGVESDQEIVQMIG---TEEHVMAAFGPSLEEC-QKAQIFTQ-MQ 261

Query: 320  ALKYVDKLIKGTTF----PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGR 375
            ALKY+   ++        P     EE     L  S   T    +   +  KC+  A   R
Sbjct: 262  ALKYIGNKVRRQRMWGGGPKKTKMEEARE--LLASTILTHVPVKEFNFRAKCIYTAVMVR 319

Query: 376  R--------KCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR- 426
            R        K D+RD + NKRLELAG+LL    +         M K   + +   R  + 
Sbjct: 320  RVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQF 379

Query: 427  PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
             +  ++    +TNG+  A STG WS    + +R  G+   L R + +  L  + R   Q 
Sbjct: 380  DVVKHMRQDQITNGMVNAISTGNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQF 438

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSG 545
            + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + + PI +   N G
Sbjct: 439  EKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLANNLG 498

Query: 546  MEKL----ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
            +E +     ++ SY     F VF++G+ +GV +D    V+  R  RR   +   V I  +
Sbjct: 499  VEDVNLLCGEELSYP--NVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTN 556

Query: 602  ELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHGIIELVGTEE 655
                 V I  D GR+ RP ++V+          ++ L      F+  L   ++E +   E
Sbjct: 557  LTDRCVYISSDGGRLCRPYIIVKKQKPAVTDKHMEELAQGYRNFEDFLHESLVEYLDVNE 616

Query: 656  EEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQK 715
            E DC  A     + KD         TH E++   LLG+  G+IP+ +H+ + R  YQ   
Sbjct: 617  ENDCNIALYEHTINKDT--------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-A 667

Query: 716  HSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQ 775
               QA+G    N   R+DTL + L YPQ+P+ +T   +           ++   +L  GQ
Sbjct: 668  MGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIE-----------LIDFEKLPAGQ 716

Query: 776  NAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF 835
            NA VAV  + GY+ ED+LV+N+ASL+RG  R    ++ K  +     Q   +    M++ 
Sbjct: 717  NATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLD- 775

Query: 836  GKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA----------------DHSI 879
               +  I R + LD DG    G  +++  +++ K   +                  D  I
Sbjct: 776  AATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPI 835

Query: 880  KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENF 939
              K      ++KV++SSN +      + LRQ R P +GDKFSS HGQKGV G +  QE+ 
Sbjct: 836  TYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDM 895

Query: 940  PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVD 999
            PF   GI PDI++NPH FPSR T G+L+E   GK       G+  G   Y T F    V 
Sbjct: 896  PFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKA------GVLDGKFHYGTAFGGSKVK 949

Query: 1000 AITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHP 1059
             + E L R G++  G + +  G TGE + + I+ GP +YQ+L HM  DK+  R  GP   
Sbjct: 950  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1009

Query: 1060 LTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVI 1119
            LTRQP   R R GG++ GEMERDCLI +GA+  L ERL   SD++++ +C +C       
Sbjct: 1010 LTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQC------- 1062

Query: 1120 QRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
                  G      +C  C S   +    +PY  KLL QEL SM I
Sbjct: 1063 ------GLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNI 1101


>gi|45545321|gb|AAS67508.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Cryphonectria parasitica]
          Length = 941

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 335/972 (34%), Positives = 489/972 (50%), Gaps = 127/972 (13%)

Query: 201  AEKVFVAQEQIC------LKRLWVSNSMGWTVAYKSENKRNRLI--VRLVDMSKFEDIKG 252
            +EKV +AQE+         K+   S  +       +  K +RLI    L   +K E  +G
Sbjct: 1    SEKVLIAQERSAANIVQVFKKAQPSPDLYQAEIRSALEKGSRLISSTTLKLKAKGETARG 60

Query: 253  G---EKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADN 309
            G       ++ ++  EIPI I+F ALGV SD++I+N + +  +D  ++ +L   I +A  
Sbjct: 61   GFGQTIQATLPYVKKEIPIAIVFRALGVISDEDILNAVCYDRQDTQMMEMLRPCIEEAF- 119

Query: 310  KCDEFRKGRNALKYVDKLIK----GTTFPPGESTEECMNTYLFPSLHGTK----QKARFL 361
                 ++   AL Y+ K        +     ++ +E +   L P +  T+    +KA FL
Sbjct: 120  ---AIQEREVALDYIAKRSNSGHSASKIQRMKNAKEILQKELLPHIAQTEGCETRKAYFL 176

Query: 362  GYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDL-- 419
            GYM   LLQ   GRR  D+RD F  KRL+LAG LL        A   + + K L  D+  
Sbjct: 177  GYMTHKLLQCALGRRDTDDRDHFGKKRLDLAGPLL--------AKLFRNIVKKLTGDMMA 228

Query: 420  YGDRTVRPIEYY-----LDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQ 474
            Y  R V   +++     +  S LTNGL  + +TG W    K     +G+   L R     
Sbjct: 229  YMKRCVSEGKHFDLALGIRHSTLTNGLKYSLATGNWGEQKKAMSSTAGVSQVLNRYTFAS 288

Query: 475  TLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SI 533
            TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   VS  S 
Sbjct: 289  TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSP 348

Query: 534  LEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELP 593
             EPI + +    ME L +    +     K+F++G W+GV       V+ ++  RRR  + 
Sbjct: 349  AEPIKDFMVQRNMEVLEEYEPGASPDATKIFINGTWVGVHSQPAHLVTLVQELRRRCIIS 408

Query: 594  TQVEIKRDELQSEVRIFMDAGRILRPLLVV-----ENMGKIKSL---------------- 632
             +V + RD    E +IF DAGR++RPL VV     EN  + + L                
Sbjct: 409  HEVSLVRDIRDREFKIFSDAGRVMRPLFVVNTPDNENRSRRRDLALTKEHAGVLRMMPKY 468

Query: 633  -----EGKNYTFQALLDHGIIELVGTEEEED---CCTAWGI------KYLLKDIEDKKP- 677
                 +   + +  L + G+IE +  EEEE    C T   +      K   KD +D++P 
Sbjct: 469  SRKKDDEDYFGWDGLQNSGVIEYLDAEEEETAMICMTPEDLEDFRQRKLRGKDGKDEEPE 528

Query: 678  ---------IK---------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQ 719
                     +K         +THCE+  + LLG+   IIPF +H+ + R  YQS     Q
Sbjct: 529  DEGRSLNARVKTRINPDIHMYTHCEIHPAMLLGICASIIPFPDHNQSPRNTYQS-AMGKQ 587

Query: 720  AIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIV 779
            A+GF  TN S R+DT+++ L+YPQ+PL  T   +            L   EL  GQNAIV
Sbjct: 588  AMGFFLTNYSRRMDTMANILYYPQKPLATTRSME-----------FLKFRELPAGQNAIV 636

Query: 780  AVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQ 839
            A+  + GYNQEDS++MN++S++RG+FRS   RSY        + V   S +       ++
Sbjct: 637  AIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDSEKRVGINVVE-SFEKPFRSDTLR 695

Query: 840  SKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH---------------SIKLKHT 884
             K G  D LDDDG    G  +   DI+IGK +   AD+               S  L+ T
Sbjct: 696  LKHGTYDKLDDDGIIAPGVRVSGEDIIIGKTSPINADNQELGQRTEQHVKRDASTPLRST 755

Query: 885  ERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQ 944
            E G++  V++++N DG  +  V +R  + P +GDKF+S HGQKG +G    QE+ PFT +
Sbjct: 756  ESGIIDSVIVTTNQDGLRYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFTRE 815

Query: 945  GIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQ 1004
            GI PDI+INPHA PSR T   L+E  + K +A L      G++  ATPF   +VD+I+E 
Sbjct: 816  GITPDIIINPHAIPSRMTIAHLIECLMSK-LATL-----KGMEGDATPFTEVTVDSISEL 869

Query: 1005 LHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQP 1064
            L + G+   G E +Y+G TG  +R+ +F GPT+YQRL HM +DK+  R  GPV  +TRQP
Sbjct: 870  LRQHGYQSRGFEVMYNGHTGRKLRAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQP 929

Query: 1065 VADRKRFGGIKF 1076
            V  R R GG++F
Sbjct: 930  VEGRARDGGLRF 941


>gi|347481989|gb|AEO97975.1| DNA-directed RNA polymerase subunit B [Emiliania huxleyi virus 84]
          Length = 1156

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 366/1209 (30%), Positives = 570/1209 (47%), Gaps = 141/1209 (11%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
            + N    V+HQI SY+ FI+N L          I+  G D S           + F   +
Sbjct: 16   YINSVSPVAHQIESYDHFIENQLPY--------IISEGSDISYMHSSGKVSHHVHFTNPS 67

Query: 93   LDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYI 152
            +++P+    +G  +  + P  ARL+ +TYSS + V V        R+            I
Sbjct: 68   VNRPAIQESDGFYK-PITPHIARLRGLTYSSTVVVDV-----IHDRI---NHTVSPPTLI 118

Query: 153  QKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD---------CDFDHGGYFIIKGAEK 203
             ++V      N+II +IPVMV+S LC++  V + D         C  D GGYFII G EK
Sbjct: 119  NRKVFR----NVIIAQIPVMVRSKLCYLADVSENDLSADAKKHECKVDPGGYFIISGNEK 174

Query: 204  VFVAQEQICLKRLWVSNS-----MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVL- 257
              + Q +I    +++  S       +T   +S ++        + M+   DI  GE  + 
Sbjct: 175  TLIPQTKIRTNHVFIFPSKHGEKHKYTAEVRSCHEAKLRSTSTIYMN-INDISNGEVPVI 233

Query: 258  --SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDC-SILNILFASIHDADNKCDEF 314
               + FL + + ++ILF  LG  S  +I+N I    +D  +IL I+     D+D K +  
Sbjct: 234  TCKLPFLKSNLSVFILFRMLGAESTDDIINYIGNIPKDTEAILRIML----DSDTKQNYS 289

Query: 315  RK------GRNAL------------KYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQ 356
            R       GRN              KY+D +I     P         +  L  +    K+
Sbjct: 290  RDAIMDWVGRNVTSDTTRATKESREKYIDHIITSELAP---------HMGLVNNPETNKK 340

Query: 357  KARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHI-AHARKRMAKAL 415
            K  F+G+M++ L+   +G+   D+RDDF NKR++ AG LL   L+ H   +A + ++  L
Sbjct: 341  KMIFIGHMIQRLMSVATGQEVVDDRDDFINKRIDSAGALLALLLRQHHRGNAMQGLSTQL 400

Query: 416  QRDLYGDRTVR-PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERI-----SGIVANLGR 469
            ++ +   R     +   +    +T+GL  AF+TG W     R         +G+V  L R
Sbjct: 401  RKQVESPREATFNVGEIVSHKKITSGLKFAFATGTWG--ISRGGGTANGGQTGVVQILPR 458

Query: 470  ANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLV 529
               + TL   R+    +   G+    R  HPS WG +C   TP+G+ CGLV NL +T  +
Sbjct: 459  LTTMATLGASRKINTPIAREGRTAGPRMLHPSSWGLVCCSDTPEGQACGLVSNLAMTTRI 518

Query: 530  ST-SILEPIFEQLFN-SGMEKLADDASYSLGGKFKVFVDGDWIG--VCKDSL-SFVSELR 584
               + ++PI   L        ++   S+     + + V+G  +G  +  D +    +++R
Sbjct: 519  RIGAPMQPIAILLMTLDHTIDISTATSHERYIGYALHVNGTIVGYAITIDQIKEIATQMR 578

Query: 585  RKRRRKELPTQVEIKRDELQSEVRIFM--DAGRILRPLLVVENMGKIKSLEGKNYT---- 638
              RR   LP    I    + ++  +F+  D G +LRPL++ +       +  +N      
Sbjct: 579  SLRRHGNLPFDCSIS---ISNDNSLFVNSDHGALLRPLIIRDRYHDFVCMAMQNPAVVPN 635

Query: 639  -FQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGI 697
             +  +L  GIIE + + E+    T   +     DIE  +   +TH E+  + L G+    
Sbjct: 636  KYTRMLREGIIEYIDSAEQ----TNMRVAIHHTDIEQDE---YTHIEIHPALLTGICVSQ 688

Query: 698  IPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGK 757
            IPF +H+ + R+ YQ+ +   QAIG  TTN + R+DT+ H L  PQ+PL  T + + LG 
Sbjct: 689  IPFCDHNQSPRIAYQAAQ-CKQAIGLYTTNFAERLDTVGHVLATPQKPLVTTRLEELLGT 747

Query: 758  PGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEV 817
                         + +G   IVA+  + G+NQ+DS+++N++S++RG+F S    + + E 
Sbjct: 748  S-----------VVRSGAVPIVAIMCYSGFNQDDSVLLNQSSIDRGLFTSFAYHTIRDEE 796

Query: 818  DNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA------ 871
                  ++R  +   +  G    K      +DD G P IG    +GD++IGK        
Sbjct: 797  KGTGADIERFENPKNIP-GCSGMKEADYSKIDDKGMPIIGKTFYNGDVLIGKVVSMSLLQ 855

Query: 872  ----------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFS 921
                      D+  D S  L+  E  +V  V LS   +G  +  V  R +R P +GDKFS
Sbjct: 856  ADPKEGEVRRDTKRDRSHVLRTDEPVVVDAVFLSKTPEGHGYVKVRTRAIRIPMVGDKFS 915

Query: 922  SMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKG 981
            + HGQKGV G      +FP T  G+ PDI+INPHA PSR T G L+E  L K +A     
Sbjct: 916  ARHGQKGVCGVTMPAADFPCTADGVAPDIIINPHAIPSRMTIGMLMEMVLSK-VACY--- 971

Query: 982  ICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRL 1041
               G  +  TPF   +++ I ++L   G  ++G E LY+G +GEM+ S+IFI P +YQRL
Sbjct: 972  --EGETQDGTPFTGNNIELIADRLETHGMQRYGNEMLYNGMSGEMLESMIFIAPCYYQRL 1029

Query: 1042 IHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLS 1101
             HM  DK   RN G    LTR P   R R GG++ GEME+D +I+HGA     +RLF  S
Sbjct: 1030 KHMVVDKSHARNRGAQQLLTRAPTEGRSRDGGLRIGEMEKDSIISHGAGDVAKDRLFEQS 1089

Query: 1102 DSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFS 1161
            D ++   C KC + A   +       K  G +C  C +G+      +PY  KLL QEL +
Sbjct: 1090 DIFECVACEKCGHFAR--EGTDDTSVKNSGMWCEHCKTGEHCTHTQLPYSMKLLIQELAA 1147

Query: 1162 MGI--TLKF 1168
              I  TL+F
Sbjct: 1148 AHISATLEF 1156


>gi|31873396|emb|CAD97689.1| hypothetical protein [Homo sapiens]
          Length = 1133

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 366/1185 (30%), Positives = 553/1185 (46%), Gaps = 146/1185 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYASMRFG 89
            +F    GLV   I+S+N FI   ++K        I++     +   +  W  +Y ++  G
Sbjct: 32   AFLKVKGLVKQHIDSFNYFINVEIKK--------IMKANEKVTSDADPMWYLKYLNIYVG 83

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
               +++ SF          + P   RL++MTYS+ + V +++              T   
Sbjct: 84   LPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEY--------------TRGS 123

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
            Q I +  L        IGR+P+M++S  C + G       +  +C  D GGYFI+KG EK
Sbjct: 124  QRIIRNALP-------IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEK 176

Query: 204  VFVAQEQICLKRLWVS----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            V + QEQ+   R+ V      ++G +V   +  K++R      +M+    +K G   L  
Sbjct: 177  VILIQEQLSKNRIIVEADRKGAVGASVTSSTHEKKSR-----TNMA----VKQGRFYLRH 227

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
              LS +IPI I+F A+GV SD+EIV +I     +  ++     S+ +   K   F +   
Sbjct: 228  NTLSEDIPIVIIFKAMGVESDQEIVQMIG---TEEHVMAAFGPSLEEC-QKAQIFTQ-MQ 282

Query: 320  ALKYVDKLIKGTTF----PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGR 375
            ALKY+   ++        P     EE     L  S   T    +   +  KC+  A   R
Sbjct: 283  ALKYIGNKVRRQRMWGGGPKKTKIEEARE--LLASTILTHVPVKEFNFRAKCIYTAVMVR 340

Query: 376  R--------KCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR- 426
            R        K D+RD + NKRLELAG+LL    +         M K   + +   R  + 
Sbjct: 341  RVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQF 400

Query: 427  PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
             +  ++    +TNG+  A STG WS    + +R  G+   L R + +  L  + R   Q 
Sbjct: 401  DVVKHMRQDQITNGMVNAISTGNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQF 459

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSG 545
            + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + + PI +   N G
Sbjct: 460  EKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLG 519

Query: 546  MEKL----ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
            +E +     ++ SY     F VF++G+ +GV +D    V+  R  RR   +   V I  +
Sbjct: 520  VEDVNLLCGEELSYP--NVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTN 577

Query: 602  ELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHGIIELVGTEE 655
                 V I  D GR+ RP ++V+          ++ L      F+  L   ++E +   E
Sbjct: 578  LTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNE 637

Query: 656  EEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQK 715
            E DC  A     + KD         TH E++   LLG+  G+IP+ +H+ + R  YQ   
Sbjct: 638  ENDCNIALYEHTINKDT--------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-A 688

Query: 716  HSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQ 775
               QA+G    N   R+DTL + L YPQ+P+ +T   +           ++   +L  GQ
Sbjct: 689  MGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIE-----------LIEFEKLPAGQ 737

Query: 776  NAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF 835
            NA VAV  + GY+ ED+LV+N+ASL+RG  R    ++ K  +     Q   +    M++ 
Sbjct: 738  NATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLD- 796

Query: 836  GKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA----------------DHSI 879
               +  I R + LD DG    G  +++  +++ K   +                  D  I
Sbjct: 797  AATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPI 856

Query: 880  KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENF 939
              K      ++KV++SSN +      + LRQ R P +GDKFSS HGQKGV G +  QE+ 
Sbjct: 857  TYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDM 916

Query: 940  PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVD 999
            PF   GI PDI++NPH FPSR T G+L+E   GK       G+  G   Y T F    V 
Sbjct: 917  PFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKA------GVLDGRFHYGTAFGGSKVK 970

Query: 1000 AITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHP 1059
             + E L R G++  G + +  G TGE   + I+ GP +YQ+L HM  DK+  R  GP   
Sbjct: 971  DVCEDLVRHGYNYLGKDYVTSGITGEPFEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030

Query: 1060 LTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVI 1119
            LTRQP   R R GG++ GEMERDCLI +GA+  L ERL   SD++++ +C +C       
Sbjct: 1031 LTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQC------- 1083

Query: 1120 QRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
                  G      +C  C S   +    +PY  KLL QEL SM I
Sbjct: 1084 ------GLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNI 1122


>gi|356520824|ref|XP_003529060.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Glycine
            max]
          Length = 1152

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 357/1179 (30%), Positives = 564/1179 (47%), Gaps = 127/1179 (10%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
            F    GLV   ++S+N F++  ++K   +  + IV   Y           +  +RF  V 
Sbjct: 53   FLKVRGLVKQHLDSFNYFVRTDIKKIVRA-NDLIVASRYP----------HIYLRFLNVG 101

Query: 93   LDKPSFFAGNGGDE--HDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
            + KPS       DE   D+ P+  RL ++TY++ +   V++ + +      DK    R+ 
Sbjct: 102  IGKPSIMI----DEVTEDLTPQTCRLSDLTYAAPICADVEYTLGSH-----DKPDIKRKL 152

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKV 204
             ++            IGR+P+M++S  C + G ++      G+C  D GGYF+IKG EKV
Sbjct: 153  KVE------------IGRMPIMLRSCCCVLHGRDEAELAKLGECPLDPGGYFVIKGTEKV 200

Query: 205  FVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLST 264
             + QEQ+   R+ +       +     +   ++  + V + + E +      L +     
Sbjct: 201  ILIQEQLSKNRIIIDTDKKGNITASVTSSTEKIKTKTVVVMEKEKL-----WLQLNKFPK 255

Query: 265  EIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYV 324
            ++P+ ++  A+G+ SD+E+  ++     D     +L  SI +   KC  + +   AL+Y+
Sbjct: 256  KVPLMVVMKAMGMESDQEVTQMVG---RDPRYSFLLLPSIEEC-TKCKVYTR-EQALEYL 310

Query: 325  DKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDF 384
            DKL +G  F    +  +     +       + K  ++  M++ ++ A   +   D++D  
Sbjct: 311  DKL-EGAAF---SALRDVFLANVPVDQDNFRPKCIYVAVMMRRIMDAILNKDAMDDKDYV 366

Query: 385  RNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNG 440
             NKRLEL+G+L+    E   K      +    K L++                 SI+T G
Sbjct: 367  GNKRLELSGQLISLLFEDLFKSMTTEVKNLTDKMLEKPDKAKNFDICTLLTRTRSIITLG 426

Query: 441  LSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHP 500
            L R  STG +     R ER  G+   L R + +  L  + R   Q + + KV   R   P
Sbjct: 427  LERTLSTGNFEIKRFRMER-KGMTQVLQRLSFIGALGHMTRVSPQFEKSRKVSGPRALQP 485

Query: 501  SHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKLADDASYSL-- 557
            S WG +C   TP+GE+CGLVKNL +   V+T   E P+     + G+E + D ++  L  
Sbjct: 486  SQWGMLCPCDTPEGESCGLVKNLALMTHVTTDEEEKPLISLCESLGVEDMKDLSAEELHT 545

Query: 558  GGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRIL 617
               F V  +G  +G  +  L F + +R+ RR  ++   V +  +E Q  V +  D GR+ 
Sbjct: 546  PDSFLVIFNGLILGKHRRPLHFATAIRKLRRAGKIGEFVSVYVNEKQHCVYLASDGGRVC 605

Query: 618  RPLLVVEN-MGKIKSLEGKNY-----TFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKD 671
            RPL++ +  + +IK    K       TF   L  G++E +   EE +   A         
Sbjct: 606  RPLVIADKGISRIKQHHMKELMDGVRTFDDFLRDGLLEYLDVNEENNALIAL-------- 657

Query: 672  IEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIR 731
             E     + TH E++   +LG+  G+IP+ +H+ + R  YQ      QA+G    N   R
Sbjct: 658  YEGDATSETTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCA-MGKQAMGNIAFNQLRR 716

Query: 732  VDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQED 791
            +D+L + L YPQRPL  T   + +G    G            GQNA VAV  + GY+ ED
Sbjct: 717  MDSLLYLLVYPQRPLLTTKTIELVGYDKLGA-----------GQNATVAVMSYSGYDIED 765

Query: 792  SLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDD 851
            ++VMN+ASL+RG  R   ++ Y A +          +SD ++   +     GR+  LDDD
Sbjct: 766  AIVMNKASLDRGFGRCIVMKKYNAIIQKHS----NDTSDRILRPNRTADTAGRMQILDDD 821

Query: 852  GFPFIGANLQSGDIVIGKYAD---------SGAD--------HSIKLKHTERGMVQKVVL 894
            G    G  L+  DI I K +          S A+        ++   K     +V +VVL
Sbjct: 822  GIAAPGEILRPYDIYINKQSPIDTRTPKTGSAANLPDSAYRSNAQSFKGNGGEVVDRVVL 881

Query: 895  SSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINP 954
             S+ D        +R  R P LGDKFSS HGQKGV G +  QE+FPF+ +GI PD+++NP
Sbjct: 882  CSDKDNNMCIKFLIRHTRRPELGDKFSSRHGQKGVCGTIVPQEDFPFSEKGICPDLIMNP 941

Query: 955  HAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPS-----VDAITEQLHRAG 1009
            H FPSR T G+++E   GK       G+  G   Y + F   S     V+ I+E L   G
Sbjct: 942  HGFPSRMTVGKMIELLGGKA------GVSCGRFHYGSAFGERSGHADKVETISETLVSKG 995

Query: 1010 FSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRK 1069
            F+  G + +Y G TG  +++ IF+GP +YQ+L HM  DK+  R +GP   LTRQP   R 
Sbjct: 996  FNYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMLTRQPTEGRA 1055

Query: 1070 RFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKV 1129
            R GG++ GEMERDCLIA+GA+  ++ERL   SD +++ +C  C  +            K+
Sbjct: 1056 RNGGLRVGEMERDCLIAYGASMLIYERLMLSSDPFEVQVCTACGLLGYY-------NHKL 1108

Query: 1130 RGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
            +   C  C +GD+I    +PY  KL+ QEL SM I  + 
Sbjct: 1109 KTGICSSCKNGDNISTMKLPYACKLMIQELQSMNIVPRL 1147


>gi|13542013|ref|NP_111701.1| DNA-directed RNA polymerase subunit B [Thermoplasma volcanium GSS1]
 gi|14325446|dbj|BAB60350.1| DNA-directed RNA polymerase B [Thermoplasma volcanium GSS1]
          Length = 1195

 Score =  478 bits (1229), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 387/1273 (30%), Positives = 616/1273 (48%), Gaps = 216/1273 (16%)

Query: 27   RKAAVSFFNEYGLVSHQINSYNEFIKNG------LQKAFDSFGETIV----EPGY---DP 73
            R+   ++F +YG+V+HQ++S N F  +       +Q+  D   ET V    +PG+   DP
Sbjct: 2    REIVDAYFKKYGIVNHQLDSMNSFYASSDNPNSVMQQIVD---ETKVSDDADPGFFVLDP 58

Query: 74   SKKGEGEWR--YASMRFGQVTLDKPSFFAGN------GGDEHDMFPRHARLQNMTYSSRM 125
            +K G  + R  Y  +R     + + + F G        G  + + P  ARL+++ Y + +
Sbjct: 59   AKTGGHDIRIYYGRVRENGHYVGEQTIFVGKPEIKEASGASNQITPNEARLRDLNYMAPV 118

Query: 126  KVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM----- 180
             +K+        R+  D  + G E              I +G IPVMV+S +C +     
Sbjct: 119  TLKL--------RIVEDGIEKGSE-------------TIKVGDIPVMVRSKICTLAEGNL 157

Query: 181  -KGVEK----------------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMG 223
             + +EK                G+   D GGYFII G+E+V V+ E +   ++ V     
Sbjct: 158  DQYIEKNNGPIGLSRREKLQYVGEDPDDPGGYFIIGGSERVIVSLEDLAPNKIMVE---- 213

Query: 224  WTVAYKSENKRNRLIVR------LVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGV 277
            W   Y+S+ +  ++  +      L  M K  D   G   +S+  ++  +P+ IL  ALG+
Sbjct: 214  WEDRYESKVEVAKVFSQRGGFRALTSMEKGSD---GTINVSIPSVAGTVPLVILMKALGL 270

Query: 278  SSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN----ALKYVDKLIKGTTF 333
              D ++ + I    E   +  I++A+I D+ N       G N    A+ Y++K      F
Sbjct: 271  ERDVDVHDAIASVPE---MEPIIYANIEDSKNPKILPPNGVNTTEDAISYLEK-----RF 322

Query: 334  PPGESTE-------ECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRD 382
              G++ E       + ++  L P L  +     +KA +LG M + LL+   G RK D++D
Sbjct: 323  AAGQAKEFRDKKISQMLDHSLLPHLGDSASDRIRKAIYLGRMARSLLELSLGIRKEDDKD 382

Query: 383  DFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLS 442
               NKR++LAG+L++   +       K +   L++     R ++ I   +   +LT  + 
Sbjct: 383  HLANKRIKLAGDLMDELFRSAFQSVMKDLKYQLEKTYNRKRGIK-IRPAVRQDLLTQRIL 441

Query: 443  RAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSH 502
             A STG W     RT    G+   L R + L T+  LRR    +  T    +AR  HP+ 
Sbjct: 442  HAMSTGNWIG--GRT----GVSQLLDRVSNLSTISHLRRIISPLTRTQPHFEARDLHPTQ 495

Query: 503  WGKICFLSTPDGENCGLVKNLGVTGLVSTSI-LEPIFEQLFNSGMEKLADDASYSLGGKF 561
            WG+IC   TP+G+NCGLVKN  +   V+  I  E + E L    ++++ +++      K 
Sbjct: 496  WGRICPNETPEGQNCGLVKNAALLINVTQGIDSETVMEILKGMDVKEVLEESP----NKG 551

Query: 562  KVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLL 621
            +V+++GD++G   D    V  LR +RR   +  ++ ++ D+  +EV +  D GR+ RPLL
Sbjct: 552  RVYLNGDFVGYHDDPRYLVRRLREERRAGRISDEINVRYDDNTNEVIVNCDRGRLRRPLL 611

Query: 622  VV--------ENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDC---CTAWGI----- 665
            V+        E+M  I+ L    Y+F+ L+  G +E +  EEEED      A+ I     
Sbjct: 612  VLKDGRTVITEDM--IEKLRKDEYSFEDLVKVGALEWLDAEEEEDAYVAVYAYNIPEKCP 669

Query: 666  ---KYLLKDIED-KKP-----------------------IKFTHCELDMSFLLGLSCGII 698
                YL + + D   P                        + TH E+D + +LG+   II
Sbjct: 670  HCSSYLYRSMVDWSNPGSNNIILECGFCYNKFEVPSLITPEHTHLEIDPAMILGVVASII 729

Query: 699  PFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKP 758
            P+  H+ + R+   S   + Q++GF  +N  IR DT  H L YPQ PL RT + +     
Sbjct: 730  PYPEHNSSPRITIASAM-AKQSLGFAQSNVRIRPDTRGHLLHYPQVPLVRTRVME----- 783

Query: 759  GYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVD 818
               + H   RP    GQN +VAV  + GYN +D+LV+N+A+++RG+ RS   R+Y AE  
Sbjct: 784  ---YTHYDRRPA---GQNFVVAVLSYEGYNIQDALVINKAAIDRGLGRSTFFRTYSAE-- 835

Query: 819  NKEMQVKRRSSDDMVNFGKIQSK--IGR-----VDSLDDDGFPFIGANLQSGDIVIGK-- 869
                  +RR      +  +I +   IG        +LD+ G  +  A ++  D++IGK  
Sbjct: 836  ------ERRYPGGQEDKFEIPTHDVIGARAEEYYKNLDESGIIYPEAYVEGSDVLIGKTS 889

Query: 870  ---YADSGADH---------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLG 917
               + + G +          S+ ++  E G V  V L+ ++       + +R  R P LG
Sbjct: 890  PPRFLEEGEERLGPQRRRESSVTMRPNESGYVDNVFLTVSESNSRVVKIKVRSERIPELG 949

Query: 918  DKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAA 977
            DKF+S HGQKGV+G +  QE+ PFT +GI+PD++ NPH+ PSR T G +LE   GK  + 
Sbjct: 950  DKFASRHGQKGVIGLVVPQEDMPFTEEGIIPDLIFNPHSIPSRMTVGHILEMIGGKIASR 1009

Query: 978  LGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTF 1037
             GK I        T F+     ++ ++L + GF K GTE +YDG TG   R+ IF+G  +
Sbjct: 1010 TGKFID------GTIFSGEPEKSLRDELVKYGFRKSGTEVMYDGITGRKFRADIFVGVIY 1063

Query: 1038 YQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERL 1097
            YQ+L HM   K   R+ GPV  LTRQP   R R GG++FGEMERD LIAHGAA  + +RL
Sbjct: 1064 YQKLHHMVAGKFHARSRGPVQILTRQPTEGRSRQGGLRFGEMERDTLIAHGAAMVIKDRL 1123

Query: 1098 FTLSDSYQMHIC--RKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLL 1155
               SD   +++C    C ++A +  R  G  R      C +C +  +I      Y  KL+
Sbjct: 1124 LDQSDGTVLYVCGNPSCGHIA-IYDRRKGTLR------CPVCGNTGNIYPIETSYAFKLM 1176

Query: 1156 CQELFSMGITLKF 1168
              EL S+G+ ++ 
Sbjct: 1177 RDELISLGVVMRL 1189


>gi|303287030|ref|XP_003062804.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226455440|gb|EEH52743.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1197

 Score =  478 bits (1229), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 366/1199 (30%), Positives = 567/1199 (47%), Gaps = 156/1199 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+S+N  I   ++K   +     V    DPS       RY ++  G+ 
Sbjct: 80   AFLKVRGLVRQHIDSFNYLINEEIRKIIRAKANERVTCDTDPSFY----LRYTNIHVGKP 135

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             +++            D+ P+  RL++MTY++ + V  ++              T  ++ 
Sbjct: 136  CVEEDYIV-------EDITPQQCRLRDMTYAAPVTVDAEY--------------TRGKEI 174

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVF 205
            + ++        I IGRIP+M++S  C + G  +      G+C  D GGYF++KG EKV 
Sbjct: 175  VTRKTNEQGVGGITIGRIPLMLRSSRCVLTGKSEDELARLGECPLDPGGYFVVKGVEKVV 234

Query: 206  VAQEQICLKRLWVS----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYF 261
            + QEQ+   R+ +       +G +V   +  ++++  +          +K G+  L    
Sbjct: 235  LIQEQLSKNRIIIDVDAKGEIGASVTSSTHERKSKTNIV---------VKHGKLYLRHNT 285

Query: 262  LSTEIPIWILFFALGVSSDKEIV----------NLIDFTCEDCSILNILF--------AS 303
               ++PI +   A+G  SD+E+V          NL+  + ++CS L I           +
Sbjct: 286  FVEDVPILVALKAMGTESDQEVVQLVGPDPAYANLLIPSLQECSALAIFTQQQALEYCGA 345

Query: 304  IHDADNKCDEFRKGRNALKYVDK---LIKGTTFPPGESTEECMNTYLFPSLHGTKQKARF 360
                 ++   ++ GRN    VD+   ++ G               ++    +  + K  +
Sbjct: 346  KVRTQSRMGGYQYGRNRRNRVDEARDILAGVVL-----------AHVPVVAYDFRGKCAY 394

Query: 361  LGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQR--D 418
            +  M++ +L A   R + D++D + NKRLELAG+LL     +      KR+   L+R  D
Sbjct: 395  VAVMIRRILHAMIDRTQIDDKDYYGNKRLELAGQLL----ALLFEDCFKRLNADLKRQAD 450

Query: 419  LYGDRTVRPIEYYLDASI----LTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQ 474
                ++ R  ++ +   I    L+NGL  A S+G W+    R ER  G+   L R + + 
Sbjct: 451  AVLSKSNRATQFDIIKCIRQDTLSNGLEHAISSGNWTVKRFRMER-KGVTQVLSRLSFIS 509

Query: 475  TLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSIL 534
             L  + R   Q + T KV   R   PS WG +C   TP+GE+CGLVKNL +   V+T   
Sbjct: 510  ALGMMTRITSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGESCGLVKNLALMTHVTTDDE 569

Query: 535  E-PIFEQLFNSGMEKLA--DDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKE 591
            E P+ +  F  G + L+    A     G   VF++G  +GV      F  ++R  RR  +
Sbjct: 570  EEPLRKLAFTLGTQPLSLICGAELHAPGGAIVFLNGSILGVHSAPDRFARDMRYLRRIGK 629

Query: 592  LPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKS------LEGKNYTFQALLDH 645
            +   V +   +    + I  D GR+ RPLL+V +   + +      L+   + F   L  
Sbjct: 630  VGEFVSVHTTQ-GGRLYIASDGGRVCRPLLIVADGEPLATREHLDELKAGRWGFNDFLKR 688

Query: 646  GIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDH 705
            G++E +   EE     A     + +D         TH E++   +LG+  GIIP+ +H+ 
Sbjct: 689  GLVEYLDVNEENISYIALYENEITRD--------HTHLEIEPFTMLGVCAGIIPYPHHNQ 740

Query: 706  ARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHI 765
            + R  YQ      QA+G    N   R+DTL + L YPQ+P+ +T   + +G    G    
Sbjct: 741  SPRNTYQCAM-GKQAMGNIAFNQLNRMDTLMYLLVYPQKPIVKTKTIELIGYDRLG---- 795

Query: 766  LPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVK 825
                    GQNA VAV  + GY+ ED++VMN+ASL+RG  R   +R Y  +V     +  
Sbjct: 796  -------AGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVLRKYATQVK----KYS 844

Query: 826  RRSSDDMVNFGKIQS-KIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHT 884
             R+ D +V   + Q+   GR   LD DG   +G  +  GD+ + K + S     +   H 
Sbjct: 845  NRTMDRIVAPTESQAGPTGRHRLLDRDGIASVGTLINPGDVYVNKQSPSNTRDPLPNPHA 904

Query: 885  ------------------ERGMVQKVVLSSNDDGKNFSVVSL-RQVRSPCLGDKFSSMHG 925
                              E  +V KV+L+  D+G  F+V  L R  R P +GDKFSS HG
Sbjct: 905  MPDTFYRPTPQSYKGPQGESCVVDKVMLTMTDEGV-FNVKCLVRHTRRPEVGDKFSSRHG 963

Query: 926  QKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSG 985
            QKGV+G +  Q +FPF+ +GI PD+++NPH FPSR T G++LE   GK       G   G
Sbjct: 964  QKGVIGTILPQRDFPFSERGITPDLIMNPHGFPSRMTVGKMLELVGGKA------GAQDG 1017

Query: 986  LKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMS 1045
                 T FA  + + I   L   GFS  G + L+ G TGE + + IF+GP +YQ+L HM 
Sbjct: 1018 RFHDGTAFAGDTAEDIGATLVNHGFSYNGKDLLHCGITGEPLVAYIFMGPVYYQKLKHMV 1077

Query: 1046 EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQ 1105
             DK+  R  GP   LTRQP   R R GG++ GEMERDCLI +GA+A + ERL   SD ++
Sbjct: 1078 LDKMHARARGPRVVLTRQPTEGRARDGGLRLGEMERDCLIGYGASALILERLMISSDQFE 1137

Query: 1106 MHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
              +C KC  +A    R  G G+      C  C+   D+    +PY  KLL QEL SM I
Sbjct: 1138 AQVCNKCGLLA---YRHHGTGKDA----CAQCEDA-DVSALKLPYACKLLFQELQSMNI 1188


>gi|255950612|ref|XP_002566073.1| Pc22g21780 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211593090|emb|CAP99466.1| Pc22g21780 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1208

 Score =  478 bits (1229), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 371/1233 (30%), Positives = 571/1233 (46%), Gaps = 170/1233 (13%)

Query: 5    DNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGE 64
            + G TDP          L  F +          GLV   I+SYN F++  ++K  +S   
Sbjct: 75   NKGLTDPIDTARDKWNLLPAFLKVK--------GLVKQHIDSYNYFVEVQMKKIVES-SS 125

Query: 65   TIVEPGYDPSKKGEGEWRYASMRFGQVTLDKP--SFFAGNGGD--EHDMFPRHARLQNMT 120
            TI         + + +  +  ++F  + +  P  +   G+GG   E  + P+  RL++ T
Sbjct: 126  TI---------RSDVDHNFY-IKFTDIYVASPRRADEQGDGGLDFESTITPQECRLRDTT 175

Query: 121  YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
            Y++   + V F+           +  GR++ I++ V         IGRIP+M++S  C +
Sbjct: 176  YAA--PILVDFE-----------YVRGRQRVIRRAVP--------IGRIPMMLRSSKCVL 214

Query: 181  KGVEKG------DCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNS------MGWTVAY 228
                        +C  D GGYF++ G EKV + QEQ+   R+ V              + 
Sbjct: 215  SNKTPAQMSVLNECPLDPGGYFVVNGTEKVILVQEQLSKNRIIVETDPKKDIVQASVTSS 274

Query: 229  KSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLI- 287
             +E K    IV           K G   +    L+ +IPI IL  A+G+ +DKE++ ++ 
Sbjct: 275  SNERKSKSYIVS----------KKGRLYVKHNVLNEDIPIVILLKAMGIHTDKEMMQMVT 324

Query: 288  --------DFTCEDCSILNI-LFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES 338
                    DF       +N+ ++      D      +  R    Y    ++       E+
Sbjct: 325  GDDALYQDDFAINFEEAINVDVYTQQQALDWIGCRIKINRKQAAYRKTHVQEAV----EA 380

Query: 339  TEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLER 398
                + +++       + KA ++ +M + +L A S     D+RD   NKRLELAG++L  
Sbjct: 381  IASVIISHIEVKDMNFRPKAIYVAHMARRVLMAKSDPALVDDRDYLGNKRLELAGQMLAL 440

Query: 399  -----------ELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFST 447
                       ++K++I     +  +A Q D +   T       +  + +T G++RA ST
Sbjct: 441  LFEDLFKKFCFDIKMNIDKVLNKRNRAEQFDAWTIVT-------MHGNHITQGMNRAIST 493

Query: 448  GAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKIC 507
            G WS    R ER +G+   L R + +  L  + R   Q + T KV   R   PS +G +C
Sbjct: 494  GNWSLKRFRMER-AGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLC 552

Query: 508  FLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKLADDASYSL--GGKFKVF 564
               TP+GE CGLVKNL +   ++T+  E P+   +F  G+E ++      L   G + + 
Sbjct: 553  PADTPEGEACGLVKNLALMTHITTNDEEGPVRNLIFMLGVEDISSVGGQQLYARGAYTIS 612

Query: 565  VDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE 624
            ++G   G+ +   SF++  RR RR   +   V I  +  Q  V +  D GRI RPL+VVE
Sbjct: 613  INGTPTGLTRRPKSFLNAFRRLRRMGRVSEFVSIYINHHQRAVHVATDDGRICRPLIVVE 672

Query: 625  NMGK-------IKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKP 677
            N GK       ++ L      F   L  G++E +   EE D      I    KDI +   
Sbjct: 673  N-GKSLVGAQHLEKLRDGKMEFDDFLAQGLVEYLDVNEENDSY----IAIYEKDITNTH- 726

Query: 678  IKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSH 737
               TH E++   +LG   G+IP+ +H+ + R  YQ      QAIG   +N   R+D++ +
Sbjct: 727  ---THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQC-AMGKQAIGAIASNQFQRIDSILY 782

Query: 738  QLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNR 797
             + YPQ+P+ ++   +           +    +L  GQNA VAV  + GY+ ED+LV+N+
Sbjct: 783  LMVYPQKPMVKSRTIE-----------LTKYDQLPAGQNATVAVMSYSGYDIEDALVLNK 831

Query: 798  ASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIG 857
             S++RG  R +  R Y   + +     K          G   + I +   L+ DG   +G
Sbjct: 832  GSVDRGFGRCQVFRKYVTTLKSYPNGAKDSLRAPTFENG---APIRKHALLESDGLAAVG 888

Query: 858  ANLQSGDIVIGKYAD--------SGAD--------HSIKLKHTERGMVQKVVLSSNDDGK 901
              + +G+  I K           SG D          +  K  +   + KV++S+ +   
Sbjct: 889  EMVNNGETYINKVTPRVQNSLGFSGPDIGGGDVLEAPMNYKLPDPSYIDKVLVSATEGET 948

Query: 902  NFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQ 961
                V  RQ R P +GDKFSS HGQKGV+G +  Q + PF+ QGI PDI++NPH FPSR 
Sbjct: 949  QLIKVLTRQTRRPEVGDKFSSRHGQKGVVGIIADQADMPFSDQGINPDIIMNPHGFPSRM 1008

Query: 962  TPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDG 1021
            T G++LE   GK       G+ SG   Y T F    V  +++ L   GFS  G + L  G
Sbjct: 1009 TVGKMLELVAGKA------GVLSGQHGYGTCFGGSPVQEMSQILIDKGFSYGGKDYLTSG 1062

Query: 1022 RTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMER 1081
             TGE +   +F GP +YQ+L HM +DK+  R  GP   LTRQP   R R GG++ GEMER
Sbjct: 1063 ITGEPLPFYVFTGPIYYQKLKHMVQDKMHSRAKGPTATLTRQPTEGRSRNGGLRLGEMER 1122

Query: 1082 DCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGD 1141
            DCLIA+G +  L ERL   SD +++ IC KC  +  +              +C  C S  
Sbjct: 1123 DCLIAYGTSQLLLERLMISSDRHEVDICEKCGFMGYL-------------NWCPGCKSSR 1169

Query: 1142 DIVKANVPYGAKLLCQELFSMGIT--LKFDTEF 1172
             +VK  +PY AKLL QEL SM +T  LK D EF
Sbjct: 1170 SVVKMVIPYAAKLLIQELMSMNVTARLKLDDEF 1202


>gi|327272386|ref|XP_003220966.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Anolis
            carolinensis]
          Length = 1132

 Score =  477 bits (1228), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 366/1183 (30%), Positives = 554/1183 (46%), Gaps = 143/1183 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYASMRFG 89
            +F    GLV   I+S+N FI   ++K   +  E I     DP       W  +Y ++  G
Sbjct: 32   AFLKVKGLVKQHIDSFNYFINVEIKKIMKA-NEKITSDA-DPM------WYLKYLNIYVG 83

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
               +++ SF          + P   RL++MTYS+ + V +++              T   
Sbjct: 84   TPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEY--------------TRGS 123

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
            Q I +  L        +GR+P+M++S  C + G       +  +C  D GGYFI+KG EK
Sbjct: 124  QRIIRNALP-------VGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEK 176

Query: 204  VFVAQEQICLKRLWVS----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            V + QEQ+   R+ V      ++G +V   +  K++R  +          +K G   L  
Sbjct: 177  VILIQEQLSKNRIIVEADRKGTVGASVTSSTHEKKSRTNI---------TVKQGRFYLKH 227

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
              LS +IPI I+F A+GV SD+EIV +I  T E    +   FA   +   K   F +   
Sbjct: 228  NTLSEDIPIAIIFKAMGVESDQEIVQMIG-TEEH---VMAAFAPSLEECQKAQIFTQ-MQ 282

Query: 320  ALKYVDKLIK------GTTFPPGESTEECMNTYLFPSL----HGTKQKARFLGYMVKCLL 369
            ALKY+   ++      G      E   E + T +   +       + K  +   MV+ ++
Sbjct: 283  ALKYLGNKVRRQRMWGGPKKTKMEEARELLATTILAHVPVKEFNFRSKCIYTAVMVRRVI 342

Query: 370  QAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR-PI 428
             A  G  K D+RD + NKRLELAG+LL    +         + K   + +   R  +  +
Sbjct: 343  LA-QGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSELKKIADQVIPKQRAAQFDV 401

Query: 429  EYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQY 488
              ++    +TNG+  A STG WS    + +R  G+   L R + +  L  + R   Q + 
Sbjct: 402  VKHMRQDQITNGMVNAISTGNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQFEK 460

Query: 489  TGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGME 547
            T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + + PI +   N G+E
Sbjct: 461  TRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAGNLGVE 520

Query: 548  KL----ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDEL 603
             +     ++ SY     F VF++G+ +GV +D    V   R  RR   +   V I  +  
Sbjct: 521  DVNLLCGEELSYP--NVFLVFLNGNILGVIRDHQKLVYTFRLMRRAGYINEFVSISTNLT 578

Query: 604  QSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHGIIELVGTEEEE 657
               V I  D GR+ RP ++V+          ++ L      F+  L   ++E +   EE 
Sbjct: 579  DRCVYISSDGGRLCRPYIIVKKQTPAVTEKHMEELAQGYRNFEDFLHESLVEYLDVNEEN 638

Query: 658  DCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHS 717
            DC  A   + + KD         TH E++   LLG+  G+IP+ +H+ + R  YQ     
Sbjct: 639  DCNIALYEQTINKDT--------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-AMG 689

Query: 718  SQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNA 777
             QA+G    N   R+DTL + L YPQRP+ +T   +           ++   +L  GQNA
Sbjct: 690  KQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIE-----------LIEFEKLPAGQNA 738

Query: 778  IVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK 837
             VAV  + GY+ ED+LV+N+ASL+RG  R    ++ K  +     Q   +    M++   
Sbjct: 739  TVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLD-AA 797

Query: 838  IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA----------------DHSIKL 881
                I R + LD DG    G  +++  +++ K   +                  D  +  
Sbjct: 798  THKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQTPLEGSSVPQQPQYKDVPVTY 857

Query: 882  KHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPF 941
            K      ++KV++SSN +      + LRQ R P +GDKFSS HGQKGV G +  QE+ PF
Sbjct: 858  KGATDSYIEKVMISSNAEDAFLIKILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPF 917

Query: 942  TIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAI 1001
               GI PDI++NPH +PSR T G+L+E   GK       G+  G   Y T F    V  +
Sbjct: 918  CDSGICPDIIMNPHGYPSRMTVGKLIELLAGKA------GVLDGRFHYGTAFGGSKVKDV 971

Query: 1002 TEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLT 1061
             E L R G++  G + +  G TGE + + I+ GP +YQ+L HM  DK+  R  GP   LT
Sbjct: 972  CEDLIRYGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLT 1031

Query: 1062 RQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQR 1121
            RQP   R R GG++ GEMERDCLI +GA+  L ERL   SD++++ +C +C         
Sbjct: 1032 RQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQC--------- 1082

Query: 1122 VVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
                G      +C  C S   +    +PY  KLL QEL SM I
Sbjct: 1083 ----GLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNI 1121


>gi|407926681|gb|EKG19645.1| DNA-directed RNA polymerase subunit 2 domain 6 [Macrophomina
            phaseolina MS6]
          Length = 1189

 Score =  477 bits (1228), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 371/1216 (30%), Positives = 570/1216 (46%), Gaps = 176/1216 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAF--DSFGETIVEPGYDPSKKGEGEWRYASMRFG 89
            +F    GLV   I+S+N F+   L++    + +  + V+  +         WRY  +R  
Sbjct: 70   AFLKVKGLVKQHIDSFNYFVDVQLKEILRANQYVYSDVDDKF--------FWRYTDIR-- 119

Query: 90   QVTLDKPSFFAGNG--GDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
               + KP         G +  + P   RL++MTY++ + V V++             K G
Sbjct: 120  ---VLKPCRVEEENVRGIQSTITPNECRLRDMTYAAPIVVDVEY-------------KKG 163

Query: 148  REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGA 201
              +  +K         I IGR+P+M++S+ C + G  +      G+C  D GGYFI +G 
Sbjct: 164  NVKVKRK--------GIHIGRMPIMLRSNKCHLWGKSESQMGQLGECSIDPGGYFITRGQ 215

Query: 202  EKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYF 261
            EKV + QEQ+   R+ V +  G   A         +I   VD      +   + +L +  
Sbjct: 216  EKVILVQEQLSKNRVIVESMKGIIQA--------SVISFTVDRKSKGYVLLKKGLLYLKH 267

Query: 262  --LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA--DNKCDEFRKG 317
               + +IP+ I F A+G+ S+ EI+ L+     D S     FA   +A  + K +     
Sbjct: 268  NCFTEDIPVVIAFKAMGIQSEHEILLLV---AGDDSAYQDEFAVNFEACYNEKNERINTQ 324

Query: 318  RNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGT------------KQKARFLGYMV 365
              AL+YV +  +    P G      +      +L               + KA ++ YM 
Sbjct: 325  HQALEYVGQRTRQLRKPIGNRQARNLQQEAIDALSNMMMSHVPVVGMNFRPKALYIAYMT 384

Query: 366  KCLLQAYSGRRKCDNRDDFRNKRLELAGELL-----------ERELKVHIAHARKRMAKA 414
            + +L A    +  D+RD   NKRLELAG+++             + K  I    K+  +A
Sbjct: 385  RRVLMAIHDPKMVDDRDYVGNKRLELAGQMMALLFEDSFKSFNYQFKAAIDKILKKPNRA 444

Query: 415  LQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQ 474
             + D Y                +T G+ RA +TG WS    R ER +GI   L R + + 
Sbjct: 445  AEFDAYD-------HIQTHGWSITAGMERAIATGNWSLKRFRMER-AGITHVLSRLSYIS 496

Query: 475  TLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSIL 534
             L  + R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL +   ++T + 
Sbjct: 497  ALGMMTRITSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTEVP 556

Query: 535  E-PIFEQLFNSGMEKLADDASYSL--GGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKE 591
            E P+   +F  G E +   +   L   G + VFV+G  + + ++   F++  R+ RR   
Sbjct: 557  EDPVKRIVFILGAEDVQSASGTELYSDGAYIVFVNGSPLALTREPRQFLNGFRKFRRMGR 616

Query: 592  LPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLD 644
            +   V I  +     V+I  D GRI RPL+VVE  GK       +++L+     F   + 
Sbjct: 617  ISEFVSIHINHHHRAVQIATDEGRICRPLIVVER-GKSRVSARYLRALQKGTMEFDDFIS 675

Query: 645  HGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHD 704
             G++E +   EE D      I    KD+++      TH E++   +LG   G+IP+ +H+
Sbjct: 676  RGLVEYLDVNEENDS----NICIYEKDLKEHH----THLEIEPFTILGAVAGLIPYPHHN 727

Query: 705  HARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNH 764
             + R  YQ      QAIG    N   R+DTL + + YPQ+P+ +T   +           
Sbjct: 728  QSPRNTYQC-AMGKQAIGAIAYNQFTRIDTLLYLMVYPQQPMVKTRTIE----------- 775

Query: 765  ILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSE-------HIRSYKAEV 817
            ++   +L  GQNA VAV  + GY+ ED+LV+N+AS +RG  R +        ++SY    
Sbjct: 776  LIKYDKLPAGQNATVAVMSYSGYDIEDALVINKASCDRGFGRCQVFKKATTTLKSYANGS 835

Query: 818  DNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH 877
             +K    +R +    VN      K+G     + DG   +G  L+  D+ + K+     + 
Sbjct: 836  QDKITGPERNADGTPVN--PRHKKVG-----ESDGIAEVGMLLEKDDVYLNKFVPVQTN- 887

Query: 878  SIKLKHTER-------------------GMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGD 918
             + L+  +R                     V KV+L+ N+       +  RQ R P LGD
Sbjct: 888  PVGLEEQQRRKQPTEFRPTPMSYKLPDPAYVDKVLLTENESNTPVIKIQTRQTRRPELGD 947

Query: 919  KFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAL 978
            KFSS HGQKGV+G +  Q + PF  QGI PDI++NPH FPSR T G++LE   GK     
Sbjct: 948  KFSSRHGQKGVVGIIAEQIDMPFNDQGICPDIIMNPHGFPSRMTVGKMLELLSGKA---- 1003

Query: 979  GKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFY 1038
              G+ +G  +Y T F     + +++ L  AGFS  G + L  G TGE + + +F GP +Y
Sbjct: 1004 --GVMNGELQYGTCFGGSKAEDMSQILLEAGFSYSGKDMLTSGITGECLPAYVFFGPIYY 1061

Query: 1039 QRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLF 1098
            Q+L HM +DK+  R  GP   LTRQP   R R GG++ GEMERDCLIA+GA+  L ERL 
Sbjct: 1062 QKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLM 1121

Query: 1099 TLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQE 1158
              SD+++  +C +C            G    +G +C+ C S   +V+  +PY AKLL QE
Sbjct: 1122 LSSDAHECDVCERC------------GMMGYQG-WCQSCRSSKGVVRMTIPYAAKLLIQE 1168

Query: 1159 LFSMGI--TLKFDTEF 1172
            L SM +  +LK   EF
Sbjct: 1169 LLSMNVKASLKLGDEF 1184


>gi|68131836|gb|AAY85196.1| RNA polymerase II second largest subunit [Chimonanthus praecox]
          Length = 906

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 317/944 (33%), Positives = 493/944 (52%), Gaps = 103/944 (10%)

Query: 109 MFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGR 168
           +FP+ ARL+N+TYS+ + V V       KR+     K G +   ++   + E T + IG+
Sbjct: 5   LFPKAARLRNLTYSAPLYVDVT------KRI----IKKGHD--CEEVTETQEFTKVFIGK 52

Query: 169 IPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV---- 218
           +P+M++S  C +         E G+C +D GGYFII G+EKV +AQE++    ++V    
Sbjct: 53  VPIMLRSSYCTVYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 112

Query: 219 -SNSMGWTVAYKS--ENKR---NRLIVRLVDMSKFEDIKGGEKV-LSVYFLSTEIPIWIL 271
             N   +    +S  EN+    + + VR++  +  +    G+ +  ++ ++ TEIPI I+
Sbjct: 113 QPNKYAYVAEVRSMAENQNRPPSSMFVRMLSRASSKGGSSGQYIRATLPYIRTEIPIIIV 172

Query: 272 FFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGT 331
           F ALG  +DK+I+  I +   D  ++ +L  S+ +A       +  + AL Y+ K  +G+
Sbjct: 173 FRALGFVADKDILEHICYDFADTQMMELLRPSLEEAF----VIQNQQVALDYIGK--RGS 226

Query: 332 TFPPGES-----TEECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRRKCDNRD 382
           T    +       +E +   + P +    +   +KA + GY++  LL    GRR  D+RD
Sbjct: 227 TVGVTKEKRIKYAKEILQKEMLPHVGTGEYCETKKAYYFGYIIHRLLLCAIGRRPEDDRD 286

Query: 383 DFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLS 442
            + NKRL+LAG LL    ++      + +   +Q+ +   + V  +++ + A  +T+GL 
Sbjct: 287 HYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN-LQFAIKAKTVTSGLK 345

Query: 443 RAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSH 502
            + +TG W        R +G+   L R     TL  LRR    +   GK+   R  H SH
Sbjct: 346 YSLATGNWGQANAAGTR-AGVSQVLNRLTFASTLSHLRRLNSPIGREGKLAKPRQLHNSH 404

Query: 503 WGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKF 561
           WG +C   TP+G+ CGLVKNL +   ++  S   PI E L     E   + +   +    
Sbjct: 405 WGMMCPAETPEGQACGLVKNLALMVYITVGSAAHPILEFLEEWSTENFEEISPAVIPQAT 464

Query: 562 KVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLL 621
           K+FV+G W+G+ ++    V  LR  RRR ++ T+V + RD    E+R++ D GR  RPL 
Sbjct: 465 KIFVNGCWVGIHRNPDLLVKTLRLLRRRVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLF 524

Query: 622 VVE---------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLK-- 670
           +VE         ++  ++  E +   +  L+  G IE V TEEEE    +  I  L+   
Sbjct: 525 IVEKQRLLIKKKDIRVLQQRETQEEGWHDLVAKGFIEYVDTEEEETTMISMTISDLVSAR 584

Query: 671 -DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPS 729
            + E+     +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN  
Sbjct: 585 LNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGIYVTNYQ 643

Query: 730 IRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQ 789
           +R+DTL++ L+YPQ+PL  T   + L      H   LP      G NAIVA+  + GYNQ
Sbjct: 644 LRMDTLAYVLYYPQKPLVTTRAMEHL------HFRQLP-----AGINAIVAIACYSGYNQ 692

Query: 790 EDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK------IQSKIG 843
           EDS++MN++S++RG FRS   RSY+ E       VK        +FG+      +  + G
Sbjct: 693 EDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE-------DFGRPNRENTMGMRHG 745

Query: 844 RVDSLDDDGFPFIGANLQSGDIVIGKYAD-------------SGADHSIKLKHTERGMVQ 890
             D LDDDG    G  +   D++IGK +              +  DHS  L+H+E GMV 
Sbjct: 746 SYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAQDESQGQTSRYTRRDHSTSLRHSESGMVD 805

Query: 891 KVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDI 950
           +V+L++N DG  F  V +R VR P +GDKFSS HGQKG +G   +QE+ P+T++GI PDI
Sbjct: 806 QVLLTTNADGLRFVKVRMRSVRVPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGITPDI 865

Query: 951 VINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFA 994
           ++NPHA PSR T GQL+E  +GK  A +GK      +  ATPF 
Sbjct: 866 IVNPHAIPSRMTIGQLIECIMGKVAAHMGK------EGDATPFT 903


>gi|219116230|ref|XP_002178910.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217409677|gb|EEC49608.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1211

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 361/1209 (29%), Positives = 579/1209 (47%), Gaps = 157/1209 (12%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
            F     L+   I+S++ F+   +Q+   S     +   +DP    +   RY +   G+ +
Sbjct: 74   FLRLRSLLRQHIDSFDHFVDVEMQQIVQSPSACEIRSEHDP----KFYLRYEACWVGEPS 129

Query: 93   LDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYI 152
            +++ S+   +        P   RL++ TYS+ + V V             ++  GR+  +
Sbjct: 130  VEEDSYSVKSAT------PFQCRLRDCTYSAPIYVNV-------------RYTRGRQIVV 170

Query: 153  QKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGAEKVFV 206
            +++V+        IGR+P+M++S  C ++   + D      C +D GGYF+IKG EKV +
Sbjct: 171  KRKVM--------IGRMPIMLRSKKCLLRDRSEDDLAGMKECPYDPGGYFVIKGVEKVIL 222

Query: 207  AQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEI 266
             QEQ+   R+ +       +A  + +   R          +  IK G   L    L  +I
Sbjct: 223  IQEQLSKNRVILEEDNKGIMASITSSTHER------KSKAYILIKNGRVYLKNNTLGDDI 276

Query: 267  PIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDK 326
            P+ ++  A+G+ SD E+V L+     +  I+N L  S+ +             AL+++  
Sbjct: 277  PVAVVLKAMGIESDLELVQLVG---SESPIINALALSLEEPSRLG--IHTQAQALRFIGA 331

Query: 327  LI-------------KGTTFPPGESTEECMNTYL--FPSLH-GTKQKARFLGYMVKCLLQ 370
             I             +    P  E+ E   N  L   P  H   ++KA ++G++V+ +L 
Sbjct: 332  KIRGRSGPSGPSSSYRKNVSPEDEAREVLANVVLSHVPVTHFDFREKALYIGHIVRRVLL 391

Query: 371  AYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEY 430
             + G+   D++D + NKRLELAG LL    +       K + +  Q DL   +  R   +
Sbjct: 392  VHLGKMPLDDKDYYGNKRLELAGNLLSLLFEDLFKIFNKDLKR--QADLVLSKPNRTQAF 449

Query: 431  YLDASI----LTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
             +  +I    +TNG+  A +TG W     R +R +G+   L R + +  L  + R   Q 
Sbjct: 450  DVVKTIRPDTITNGMINAIATGNWVLKRFRMDR-AGVTQVLSRLSYMSALGMMTRINSQF 508

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST--SILEPIFEQLFNS 544
            + T KV   R   PS WG +C   TP+GE CGLVKNL + G ++T  +   PI     + 
Sbjct: 509  EKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLGHITTDEADTRPIERICRDL 568

Query: 545  GMEKLADDASYSLGG--KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
            G+E +     + +     F VF++G  +GV       V  LR+ RRR      V +   +
Sbjct: 569  GVEDVKRMTGHEINSHQAFLVFLNGLILGVHTRPRELVRNLRKMRRRGLAGEFVSVYLHD 628

Query: 603  LQSEVRIFMDAGRILRPLLVV-ENMG-------KIKSLEGKNYTFQALLDHGIIELVGTE 654
             Q  V I  D GR+ RPLL+V E  G        ++SL         L+  GI+E V   
Sbjct: 629  EQCAVHIATDGGRVCRPLLIVDEETGLPKLQQIHMESLALGTMDITDLMRQGIVEYVDCN 688

Query: 655  EEEDCCTAWGIKYL----LKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVL 710
            EE +   A   + L    L  +E +K +++TH E+D   +LG+  GIIPF +H+ + R  
Sbjct: 689  EENNTLIAVTERDLEVAILHGLETRK-MRYTHLEVDPFTILGVVGGIIPFPHHNQSPRNT 747

Query: 711  YQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLG---KPGYGHNHILP 767
            Y +   + QA+G  + N   R+D L + L YPQ+P+ ++   D +     PG        
Sbjct: 748  Y-TVAMAKQAMGSVSMNQYERMDGLIYTLIYPQKPMVKSRTLDLVNFDNIPG-------- 798

Query: 768  RPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRR 827
                  G NA +AV  + GY+ ED++++N+A+++RG  R   +R ++  V         R
Sbjct: 799  ------GHNACIAVMSYSGYDIEDAIILNKAAVDRGFGRCMVLRKHQTSVRRYANGTMDR 852

Query: 828  S--SDDMVNF--GKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA-----------D 872
            +    D  +F  G+   +  R  ++D DG   +G  +++G +++ K +           D
Sbjct: 853  TCAPPDPGSFPDGEDDKRFARYMAIDKDGICRVGEKIENGSVMVNKESPADTTSNMAGVD 912

Query: 873  SGADHSIKLKH--------TERG----MVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKF 920
             G +  + + H        + RG     V KV+++SN++ +    V LRQVR P +GDKF
Sbjct: 913  FGFNSGMSMAHLNYKPSGVSYRGSASTYVDKVLITSNENEQFLIKVMLRQVRRPEIGDKF 972

Query: 921  SSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGK 980
            +S HGQKGV G +  +E+ PF   G VPD+++NPH FPSR T G+LLE  +GK       
Sbjct: 973  ASRHGQKGVCGLIVPEEDLPFNEFGHVPDLIMNPHGFPSRMTVGKLLELLVGKA------ 1026

Query: 981  GICSGLKRYATPF-----ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGP 1035
            G+  G + Y++ F     +  +  + +E L R G +  G + LY G  GE + + IF GP
Sbjct: 1027 GLYEGRQGYSSAFGEEFGSADTAQSASEALLRNGLNYTGKDILYSGTNGEPLDAYIFSGP 1086

Query: 1036 TFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHE 1095
             FYQ+L HM  DK   R  GP   LTRQP   R R GG++ GEMERDCLIA+G +  + E
Sbjct: 1087 VFYQKLKHMVLDKAHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGVSNLIME 1146

Query: 1096 RLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLL 1155
            RL   SD++  ++C  C            G  +  G +C+ C SG+ +    +PY  KLL
Sbjct: 1147 RLMHSSDAFSANVCLTC------------GLLQYEG-WCQYCRSGEKVADIRLPYACKLL 1193

Query: 1156 CQELFSMGI 1164
             QEL SM +
Sbjct: 1194 FQELQSMNV 1202


>gi|55583692|gb|AAV53365.1| RNA polymerase II second largest subunit [Hygrophoropsis aurantiaca]
          Length = 863

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 310/886 (34%), Positives = 464/886 (52%), Gaps = 109/886 (12%)

Query: 258  SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG 317
            ++ ++  +IPIW++F ALGV SD++I+  I +  +D  +L +L   I D     D     
Sbjct: 16   TIPYIRVDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDR---- 71

Query: 318  RNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLH----GTKQKARFLGYMVK 366
              AL ++    +GTT   G S E       E +   + P +        +KA F GYM+ 
Sbjct: 72   EVALDFIGN--RGTT--TGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIH 127

Query: 367  CLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR 426
             LL A   RR+ D+RD F  KRL+LAG LL        A+  + + K L RD+Y  R ++
Sbjct: 128  RLLLAALERRELDDRDHFGKKRLDLAGPLL--------ANLFRMLFKKLTRDVY--RYLQ 177

Query: 427  PI-----EYYLDASI----LTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLV 477
                   E+ L  ++    +TNGL  + +TG W    K     +G+   L R     TL 
Sbjct: 178  KCVETHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLS 237

Query: 478  DLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEP 536
             LRR    +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  S   P
Sbjct: 238  HLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAP 297

Query: 537  IFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQV 596
            + E L   G+E L ++A +S     KVFV+G W+GV +D  + V  +++ RR+ ++  +V
Sbjct: 298  VIEFLEEWGLESLEENA-HSSTPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEV 356

Query: 597  EIKRDELQSEVRIFMDAGRILRPLLVVENMGKI-------------KSLEGKNYTFQALL 643
             + RD  + E+R++ DAGR+ RPL +VEN   +             +  +G+ Y ++ L+
Sbjct: 357  SVVRDIRERELRLYTDAGRVCRPLFIVENQQLMLQKKHVKWLNQGYREEDGEEYKWEQLI 416

Query: 644  DHGIIELVGTEEEEDCCTAW-------------GIKYLLKDIEDKKPIK---------FT 681
              GIIEL+  EEEE    +              GI     D++     +         +T
Sbjct: 417  KGGIIELLDAEEEETVMISMTPEDLENSRLQSAGIDPQSNDVDYDPAARLKAGINAHTWT 476

Query: 682  HCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFY 741
            HCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DT+++ L+Y
Sbjct: 477  HCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGIYLTNFLVRMDTMANILYY 535

Query: 742  PQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLE 801
            PQ+PL  T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++S++
Sbjct: 536  PQKPLATTRSME-----------YLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSID 584

Query: 802  RGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQ 861
            RG+FRS + RSY  +++ K    +    +       ++ K G  D ++DDG    G  + 
Sbjct: 585  RGLFRSIYYRSY-MDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVS 643

Query: 862  SGDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVV 906
              DI+IGK A                +  D S  LK TE G+V +V++++N +G+ F  V
Sbjct: 644  GEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKV 703

Query: 907  SLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQL 966
             +R  R P  GDKF+S HGQKG +G    QE+ PFT +GIVPDI+INPHA PSR T G L
Sbjct: 704  RVRSTRIPQTGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHL 763

Query: 967  LEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEM 1026
            +E  L K    +G       +  ATPF   +V++++  L + G+   G E +Y G TG  
Sbjct: 764  VECLLSKVATLIGN------EGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTGRK 817

Query: 1027 VRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFG 1072
            +++ +++GPT+YQRL HM +DK+  R  GPV  LTRQPV  R R G
Sbjct: 818  LQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDG 863


>gi|303391303|ref|XP_003073881.1| DNA-directed RNA polymerase III subunit 2 [Encephalitozoon
            intestinalis ATCC 50506]
 gi|303303030|gb|ADM12521.1| DNA-directed RNA polymerase III subunit 2 [Encephalitozoon
            intestinalis ATCC 50506]
          Length = 1110

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 367/1204 (30%), Positives = 565/1204 (46%), Gaps = 171/1204 (14%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
            FF E GLV   I SY+ F+ + ++    +    IV+   D +       +Y  +R G  +
Sbjct: 13   FFKEKGLVRQHIESYDYFVDHEIKALVRA--NQIVDSDIDHT----FYLKYLDIRVGMPS 66

Query: 93   LDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYI 152
            +++           +D+FP   RL++MTYS+ + V ++   Y + R           Q I
Sbjct: 67   IEENMV-------NYDVFPIECRLRDMTYSANIYVDIE---YVRNR-----------QII 105

Query: 153  QKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG----------------DCDFDHGGYF 196
             K        +I IG++PVM++S  C ++   KG                +C  D GGYF
Sbjct: 106  VKR-------DICIGKMPVMLRSSRCHLRKEAKGIIESNKTRDRKIRESQECPLDVGGYF 158

Query: 197  IIKGAEKVFVAQEQICLKRLWVSNS---MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGG 253
            II+G E+V + QEQ+   R+ + +    +  +V   ++  +++  V + D   +      
Sbjct: 159  IIRGIERVILIQEQLSKNRIIIESGPKGLFASVTSSTDEHKSKTSVTIKDDCYY------ 212

Query: 254  EKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDE 313
               L     + EIP  I   ALG++ DKEI       C       I+  S  +  +K + 
Sbjct: 213  ---LKSSMFNEEIPAIIAMKALGLTQDKEIAE-----CIGKEYFEIIVPSFGECISK-EV 263

Query: 314  FRKGRNALKYVDKLIKGTTFPPGESTEECMNTY---LFPSLH----GTKQKARFLGYMVK 366
            F K + AL Y+   IK    P     EE +      + P++       ++K  ++  M++
Sbjct: 264  FTKDQ-ALLYMSNYIKLK--PEDNRIEEVLTILSEKVLPNVQTEGCNLRKKGIYIALMIR 320

Query: 367  CLLQAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGD 422
             L+Q      K D++D   NKR ELAG+LL    E   K      +K + K L +     
Sbjct: 321  RLVQTKLNILKEDDKDFVGNKRFELAGQLLSILFEDTFKRFNFELKKSIDKILSKRSRAQ 380

Query: 423  RTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
                     L A+++T+ LSRA STG W+    R ER SG+   L R + +  L  + + 
Sbjct: 381  EFDALTFLNLQANMITSTLSRAISTGNWNLKRFRMER-SGVTHVLSRHSYISALGMMTKI 439

Query: 483  RQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQL 541
                + T KV   R  H S WG +C + TP+GE+CGLVKNL +   ++T S   P+ + +
Sbjct: 440  NSHFEKTRKVSGPRSLHTSSWGMLCPVDTPEGESCGLVKNLALLAEITTNSDTRPVLDLM 499

Query: 542  FNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIK 599
            F  G+  +    +  +  K  F VF++GD +G+   +   + + R  RR+  +   V I 
Sbjct: 500  FRLGVVDINSVYTREIHQKDMFSVFLNGDIVGITNKAGFLIEQFRLNRRKGLIGKFVSIY 559

Query: 600  RDELQSEVRIFMDAGRILRPLLVVENMGKI----------KSLEGKNYT----------- 638
            R   +  + +  D GR+ RPL+V++  G+I          K LE  N +           
Sbjct: 560  RVPAEKVIHVASDNGRVCRPLVVIDK-GRINQMIISNQVDKYLEALNISEKIEMGSERSF 618

Query: 639  ---------FQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSF 689
                     F  LL+ G +E +   EE DC  A   + ++++         TH E+    
Sbjct: 619  FDCYLKYKSFSDLLEEGFVEYLDVNEENDCLVALRPEDIVEET--------THLEISEFA 670

Query: 690  LLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRT 749
            +LG   G++PF +H+ + R  YQ      QAIG  + N   R D +  QL Y  RP+  T
Sbjct: 671  ILGYVAGLVPFPHHNQSPRNTYQCA-MGKQAIGHISLNVKKRFDPVILQLTYTHRPMVST 729

Query: 750  MISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEH 809
             I D +      +N      E+  GQNA+VAV  + GY+ ED+LV+N+ S+ERG+FR E 
Sbjct: 730  KILDLIN-----YN------EIPAGQNAMVAVMSYSGYDIEDALVLNKTSIERGLFRVEV 778

Query: 810  IRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGK 869
             ++           +K+ S+        I     +   LDDDG    G  ++ G + + K
Sbjct: 779  YKTITT-------LLKKHSN----GLSDILGPNPKESVLDDDGLGKPGKMIRDGTVYVNK 827

Query: 870  YADSGADHSI--KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQK 927
             +     +    K+   +   + KV+++ + D      + LRQ R P +GDKFSS HGQK
Sbjct: 828  MSPVEGVYKFTGKVHRGDPAYIDKVLITKSQDQILIKTM-LRQTRPPEIGDKFSSRHGQK 886

Query: 928  GVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLK 987
            GV+G +  QE+ PF  QGI PDI++NPH FPSR T G+++E   GK       G+ SG  
Sbjct: 887  GVVGLIVGQEDMPFNDQGISPDIIMNPHGFPSRMTVGKIIELISGKA------GVLSGQI 940

Query: 988  RYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSED 1047
              +T F   SV+   E L + GFS  G +    G TG  + + IF GP FYQRL HM  D
Sbjct: 941  LDSTAFKENSVEQTCELLAKHGFSYSGKDCFTSGTTGAPLTAYIFFGPVFYQRLKHMVAD 1000

Query: 1048 KVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMH 1107
            K+  R  GP   LTRQP   R + GG+K GEMERDCLI +GA++ + ERL   SD ++ +
Sbjct: 1001 KIHMRARGPRAILTRQPTEGRSKDGGLKLGEMERDCLIGYGASSLIIERLMISSDMFEAY 1060

Query: 1108 ICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLK 1167
            +C+ C  +A             +G  C +        K  +PY  KLL QEL SM I  +
Sbjct: 1061 VCKPCGVLA------------FKG--CCVACKNTKPAKIKMPYACKLLFQELISMNILPR 1106

Query: 1168 FDTE 1171
               E
Sbjct: 1107 LHIE 1110


>gi|302790720|ref|XP_002977127.1| hypothetical protein SELMODRAFT_443461 [Selaginella moellendorffii]
 gi|300155103|gb|EFJ21736.1| hypothetical protein SELMODRAFT_443461 [Selaginella moellendorffii]
          Length = 1386

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 365/1211 (30%), Positives = 580/1211 (47%), Gaps = 169/1211 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPS---KKGEGEWRYAS--- 85
            +F    GLV   ++SYN F+   ++K   + G   +    DP+   K     ++Y +   
Sbjct: 266  AFHKVRGLVKQHLDSYNYFVNCEIKKIIHAKGNEKITSDVDPNFYIKYACDTFQYFTNIL 325

Query: 86   MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQ-KRVTSDKF 144
             RF  + +  PS          D+ P+  RL++MTYS+ + V ++   YT+ K + + K 
Sbjct: 326  FRFLDIFVGTPSI--EQDYIRQDITPQQCRLRDMTYSAPISVDIE---YTRGKDIITRKG 380

Query: 145  KTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFII 198
            K G+   +             IGR+PVM++S  C + G       + G+C  D GGYF++
Sbjct: 381  KDGQGAQV-------------IGRMPVMLRSSRCILTGKSDAELAKLGECPLDPGGYFVV 427

Query: 199  KGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKV- 256
            KG EKV + QEQ+   R+ + S+S G   A  + +   R        SK   I   EK+ 
Sbjct: 428  KGTEKVILIQEQLSKNRIIIDSDSTGSVTASVTSSTHER-------KSKTNIIIKHEKIY 480

Query: 257  LSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEF-- 314
            + +   S ++PI ++  A+G+ SD+EI+ ++     D     IL  S+ +    C     
Sbjct: 481  VKLNVFSDDVPIVVVMKAMGMESDQEIIQMVG---TDPKFAGILAPSMQE----CASLGV 533

Query: 315  RKGRNALKYVDKLI--------KGTTFPPGESTEECMNTYL-FPSLH--GTKQKARFLGY 363
                 AL+Y+   +        K T     E+ +  +N +L   ++H    + K  ++  
Sbjct: 534  YTTHQALEYLGTKVRVNRQWGSKQTKSKVDEARDILLNVFLAHVAVHRYDFRPKCIYVAL 593

Query: 364  MVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKRMA 412
            M++ +L+A   +   D+RD   NKRLELAG+LL             ELK ++     +M 
Sbjct: 594  MLRRMLEAILDKECVDDRDYVGNKRLELAGQLLALLFEDLFKRSCSELKSNVDRTLSKMN 653

Query: 413  KALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANP 472
            +A Q D+   ++++P        +LT+GL  A S+G W+    R ++  G+   + R + 
Sbjct: 654  RASQYDV--SKSLKP-------DMLTSGLENAISSGNWTVKRFRMDK-KGVTQVVSRLSY 703

Query: 473  LQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTS 532
            +  L  + R   Q + + K           WG +C   TP+GE CGL KNL +   ++T 
Sbjct: 704  IAALGHMTRVASQFEKSRK-----------WGMLCPCDTPEGEGCGLTKNLALMTHITTD 752

Query: 533  ILE-PIFEQLFNSGME--KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRR 589
              E P+ +   N G+E   L     +     F V  +G  +G+ +    F + +R+ RR 
Sbjct: 753  DEEAPLIDLCTNLGVEDINLLSGEEFHSKNAFLVMFNGTILGIHRRPQQFATLMRKLRRA 812

Query: 590  KELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN-MGKIKSLEGKNY-----TFQALL 643
             ++   V I  +E Q  + I  D GR+ RP+++ ++ + +IK    K       TF   L
Sbjct: 813  GKIGEFVSIFVNEKQRCIYIASDGGRVCRPVVIADHGVSRIKEHHMKELKDGFRTFDDFL 872

Query: 644  DHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANH 703
              G++E +   EE +   A          E +     TH E++   +LG+  G+IP+ +H
Sbjct: 873  REGLVEYLDVNEENNALIAL--------YEKEADSTTTHIEIEPFTILGVCAGLIPYPHH 924

Query: 704  DHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHN 763
            + + R  YQ      QA+G    N   R+DTL + L YPQRPL  T   + +     G  
Sbjct: 925  NQSPRNTYQC-AMGKQAMGNIAYNQLQRIDTLLYLLVYPQRPLLTTKSIELVNYDKLG-- 981

Query: 764  HILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQ 823
                      GQNA VAV  + GY+ ED++VMN+ASL+RG  R   ++ +   V   E  
Sbjct: 982  ---------AGQNASVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVLKKFSCLVRKYE-- 1030

Query: 824  VKRRSSDDMV---NFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA--------- 871
               R+ D +V     G   S++     LD DG   +G  +   DI + K +         
Sbjct: 1031 --NRTMDRIVAPRQHGHATSQL-----LDQDGIASVGERIYDKDIFVNKESPKDVKTTFL 1083

Query: 872  ------DSG---ADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSS 922
                  DS         K    E  +V KV+L++N+  +      +R  R P LGDKFSS
Sbjct: 1084 NPLALPDSAYRPTPQRYKGPLGESAIVDKVLLTTNESQQMVIKCQVRHTRRPELGDKFSS 1143

Query: 923  MHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGI 982
             HGQKGV G +  Q++FPFT +G+ PD+++NPH FPSR T G+++E   GK       G+
Sbjct: 1144 RHGQKGVCGTIVEQQDFPFTERGVCPDLIMNPHGFPSRMTVGKMIELLGGKA------GV 1197

Query: 983  CSGLKRYATPFATPS-----VDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTF 1037
             SG   Y + F  PS     V+AI+  L + GFS  G + +Y G TG  +++ I++GP +
Sbjct: 1198 QSGKYHYGSAFGEPSGHADTVEAISATLVKHGFSYCGKDLIYSGITGCPLQAYIYMGPIY 1257

Query: 1038 YQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERL 1097
            YQ+L HM  DK+  R  GP   LTRQP   R R GG++ GEMERDCL+A+G++  + ERL
Sbjct: 1258 YQKLKHMVLDKMHARAQGPRVVLTRQPTEGRSREGGLRLGEMERDCLVAYGSSMLILERL 1317

Query: 1098 FTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQ 1157
               SD +Q+ +C  C  +            K++  +C  C +G+++    +PY  KLL Q
Sbjct: 1318 MISSDQFQVQVCTNCGLLGYY-------SHKLKMNFCSYCKNGENMAAMKLPYACKLLFQ 1370

Query: 1158 ELFSMGITLKF 1168
            EL SM I  + 
Sbjct: 1371 ELQSMNIVPRL 1381


>gi|347482406|gb|AEO98347.1| DNA-directed RNA polymerase subunit B [Emiliania huxleyi virus 203]
 gi|347600966|gb|AEP15452.1| DNA-directed RNA polymerase subunit B [Emiliania huxleyi virus 207]
 gi|347601602|gb|AEP16087.1| DNA-directed RNA polymerase subunit B [Emiliania huxleyi virus 208]
 gi|357972871|gb|AET98144.1| RNA polymerase II [Emiliania huxleyi virus 201]
          Length = 1156

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 365/1209 (30%), Positives = 570/1209 (47%), Gaps = 141/1209 (11%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
            + N    V+HQI SY+ FI+N L          I+  G D S           + F   +
Sbjct: 16   YINSVSPVAHQIESYDHFIENQLPY--------IISEGSDISYMHSSGKVSHHVHFTNPS 67

Query: 93   LDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYI 152
            +++P+    +G  +  + P  ARL+ +TYSS + V V        R+            I
Sbjct: 68   VNRPAIQESDGFYK-PITPHIARLRGLTYSSTVVVDV-----IHDRI---NHTVSPPTLI 118

Query: 153  QKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD---------CDFDHGGYFIIKGAEK 203
             ++V      N+II +IPVMV+S LC++  V + D         C  D GGYFII G EK
Sbjct: 119  NRKVFR----NVIIAQIPVMVRSKLCYLADVSENDLSADAKKHECKVDPGGYFIISGNEK 174

Query: 204  VFVAQEQICLKRLWVSNS-----MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVL- 257
              + Q +I    +++  S       +T   +S ++        + M+   DI  GE  + 
Sbjct: 175  TLIPQTKIRTNHVFIFPSKHGEKHKYTAEVRSCHEAKLRSTSTIYMN-INDISNGEVPVI 233

Query: 258  --SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDC-SILNILFASIHDADNKCDEF 314
               + FL + + ++ILF  LG  S  +I+N I    +D  +IL I+     D+D K +  
Sbjct: 234  TCKLPFLKSNLSVFILFRMLGAESTDDIINYIGNIPKDTEAILRIML----DSDTKQNYS 289

Query: 315  RK------GRNAL------------KYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQ 356
            R       GRN              KY+D +I     P         +  L  +    K+
Sbjct: 290  RDAIMDWVGRNVTSDTTRATKESREKYIDHIITSELAP---------HMGLVNNPETNKK 340

Query: 357  KARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHI-AHARKRMAKAL 415
            K  F+G+M++ L+   +G+   D+RDDF NKR++ AG LL   L+ H   +A + ++  L
Sbjct: 341  KMIFIGHMIQRLMSVATGQEVVDDRDDFVNKRIDSAGALLALLLRQHHRGNAMQGLSTQL 400

Query: 416  QRDLYGDRTVR-PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERI-----SGIVANLGR 469
            ++ +   R     +   +    +T+GL  AF+TG W     R         +G+V  L R
Sbjct: 401  RKQVESPREATFNVGEIVSHKKITSGLKFAFATGTWG--ISRGGGTANGGQTGVVQILPR 458

Query: 470  ANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLV 529
               + TL   R+    +   G+    R  HPS WG +C   TP+G+ CGLV NL +T  +
Sbjct: 459  LTTMATLGASRKINTPIAREGRTAGPRMLHPSSWGLVCCSDTPEGQACGLVSNLAMTTRI 518

Query: 530  ST-SILEPIFEQLFN-SGMEKLADDASYSLGGKFKVFVDGDWIG--VCKDSL-SFVSELR 584
               + ++PI   L        ++   S+     + + V+G  +G  +  D +    +++R
Sbjct: 519  RIGAPMQPIAILLMTLDHTIDISTATSHERYIGYALHVNGTIVGYAITIDQIKEIATQMR 578

Query: 585  RKRRRKELPTQVEIKRDELQSEVRIFM--DAGRILRPLLVVENMGKIKSLEGKNYT---- 638
              RR   LP    I    + ++  +F+  D G +LRPL++ +       +  +N      
Sbjct: 579  SLRRHGNLPFDCSIS---ISNDNSLFVNSDHGALLRPLIIRDRYHDFVCMAMQNPAVVPN 635

Query: 639  -FQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGI 697
             +  +L  GIIE + + E+    T   +     DIE  +   +TH E+  + L G+    
Sbjct: 636  KYTRMLREGIIEYIDSAEQ----TNMRVAIHHTDIEQDE---YTHIEIHPALLTGICVSQ 688

Query: 698  IPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGK 757
            IPF +H+ + R+ YQ+ +   QAIG  TTN + R+DT+ H L  PQ+PL  T + + LG 
Sbjct: 689  IPFCDHNQSPRIAYQAAQ-CKQAIGLYTTNFAERLDTVGHVLATPQKPLVTTRLEELLGT 747

Query: 758  PGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEV 817
                         + +G   IVA+  + G+NQ+DS+++N++S++RG+F S    + + E 
Sbjct: 748  S-----------VVRSGAVPIVAIMCYSGFNQDDSVLLNQSSIDRGLFTSFAYHTIRDEE 796

Query: 818  DNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA------ 871
                  ++R  +   +  G    K      +DD G P IG    +GD++IGK        
Sbjct: 797  KGTGADIERFENPKNIP-GCSGMKEADYSKIDDKGMPIIGKTFYNGDVLIGKVVSMSLLQ 855

Query: 872  ----------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFS 921
                      D+  D S  L+  E  +V  V LS   +G  +  V  R +R P +GDKFS
Sbjct: 856  ADPKEGEVRRDTKRDRSHVLRTDEPVVVDAVFLSKTPEGHGYVKVRTRAIRIPMVGDKFS 915

Query: 922  SMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKG 981
            + HGQKGV G      +FP T  G+ PDI+INPHA PSR T G L+E  L K +A     
Sbjct: 916  ARHGQKGVCGVTMPAADFPCTADGVAPDIIINPHAIPSRMTIGMLMEMVLSK-VACY--- 971

Query: 982  ICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRL 1041
               G  +  TPF   +++ I ++L   G  ++G E LY+G +GE++ S+IFI P +YQRL
Sbjct: 972  --EGETQDGTPFTGNNIELIADRLETHGMQRYGNEMLYNGMSGEILESMIFIAPCYYQRL 1029

Query: 1042 IHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLS 1101
             HM  DK   RN G    LTR P   R R GG++ GEME+D +I+HGA     +RLF  S
Sbjct: 1030 KHMVVDKSHARNRGAQQLLTRAPTEGRSRDGGLRIGEMEKDSIISHGAGDVAKDRLFEQS 1089

Query: 1102 DSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFS 1161
            D ++   C KC + A   +       K  G +C  C +G+      +PY  KLL QEL +
Sbjct: 1090 DIFECVACEKCGHFAR--EGTDDTSVKNSGMWCEHCKTGEHCTHTQLPYSMKLLIQELAA 1147

Query: 1162 MGI--TLKF 1168
              I  TL+F
Sbjct: 1148 AHISATLEF 1156


>gi|351713401|gb|EHB16320.1| DNA-directed RNA polymerase III subunit RPC2 [Heterocephalus glaber]
          Length = 1133

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 365/1185 (30%), Positives = 553/1185 (46%), Gaps = 146/1185 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYASMRFG 89
            +F    GLV   I+S+N FI   ++K        I++     +   +  W  +Y ++  G
Sbjct: 32   AFLKVKGLVKQHIDSFNYFINVEIKK--------IMKANEKVTSDADPMWYLKYLNIYVG 83

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
               +++ SF          + P   RL++MTYS+ + V +++              T   
Sbjct: 84   LPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEY--------------TRGS 123

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
            Q I +  L        IGR+P+M++S  C + G       +  +C  D GGYFI+KG EK
Sbjct: 124  QRIIRNALP-------IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEK 176

Query: 204  VFVAQEQICLKRLWVS----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            V + QEQ+   R+ V      ++G +V   +  K++R      +M+    +K G   L  
Sbjct: 177  VILIQEQLSKNRIIVEADRKGAVGASVTSSTHEKKSR-----TNMA----VKQGRFYLRH 227

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
              LS +IPI I+F A+GV SD+EIV +I     +  ++     S+ +   K   F +   
Sbjct: 228  NTLSEDIPIVIIFKAMGVESDQEIVQMIG---TEERVMAAFGPSLEEC-QKAQIFTQ-MQ 282

Query: 320  ALKYVDKLIKGTTF----PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGR 375
            ALKY+   ++        P     EE     L      T    +   +  KC+  A   R
Sbjct: 283  ALKYIGNKVRRQRMWGGGPKKTKIEEARE--LLACTILTHVPVKEFNFRAKCIYTAVMVR 340

Query: 376  R--------KCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR- 426
            R        K D+RD + NKRLELAG+LL    +         M K   + +   R  + 
Sbjct: 341  RVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQF 400

Query: 427  PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
             +  ++    +TNG+  A STG WS    + +R  G+   L R + +  L  + R   Q 
Sbjct: 401  DVVKHMRQDQITNGMVNAISTGNWSLKRFKMDR-QGVTQVLSRLSYVSALGMMTRISSQF 459

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSG 545
            + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + + PI +   N G
Sbjct: 460  EKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLAGNLG 519

Query: 546  MEKL----ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
            +E +     ++ SY     F VF++G+ +GV +D    V+  R  RR   +   V I  +
Sbjct: 520  VEDVNFLCGEELSYP--NVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTN 577

Query: 602  ELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHGIIELVGTEE 655
                 V I  D GR+ RP ++V+          ++ L      F+  L   ++E +   E
Sbjct: 578  LTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNE 637

Query: 656  EEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQK 715
            E DC  A     + KD         TH E++   LLG+  G+IP+ +H+ + R  YQ   
Sbjct: 638  ENDCNIALYEHTINKDT--------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-A 688

Query: 716  HSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQ 775
               QA+G    N   R+DTL + L YPQ+P+ +T   +           ++   +L  GQ
Sbjct: 689  MGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIE-----------LIDFEKLPAGQ 737

Query: 776  NAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF 835
            NA VAV  + GY+ ED+LV+N+ASL+RG  R    ++ K  +     Q   +    M++ 
Sbjct: 738  NATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLD- 796

Query: 836  GKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA----------------DHSI 879
               +  I R + LD DG    G  +++  +++ K   +                  D  I
Sbjct: 797  AATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSSVAQQPQYKDVPI 856

Query: 880  KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENF 939
              K      ++KV++SSN +      + LRQ R P +GDKFSS HGQKGV G +  QE+ 
Sbjct: 857  TYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDM 916

Query: 940  PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVD 999
            PF   GI PDI++NPH FPSR T G+L+E   GK       G+  G   Y T F    V 
Sbjct: 917  PFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKA------GVLDGRFHYGTAFGGSKVK 970

Query: 1000 AITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHP 1059
             + E L R G++  G + +  G TGE + + I+ GP +YQ+L HM  DK+  R  GP   
Sbjct: 971  DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030

Query: 1060 LTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVI 1119
            LTRQP   R R GG++ GEMERDCLI +GA+  L ERL   SD++++ +C +C       
Sbjct: 1031 LTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQC------- 1083

Query: 1120 QRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
                  G      +C  C S   +    +PY  KLL QEL SM I
Sbjct: 1084 ------GLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNI 1122


>gi|120561243|gb|ABM27006.1| RNA polymerase II second largest subunit, partial [Zancudomyces
            culisetae]
 gi|363543580|gb|AEW26268.1| RPB2 [Zancudomyces culisetae]
          Length = 899

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 307/875 (35%), Positives = 448/875 (51%), Gaps = 82/875 (9%)

Query: 258  SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG 317
            ++ ++ +E+P+ ++F ALG  + K+I+  I +   D  ++    ASI +A    D     
Sbjct: 51   TIPYIRSEVPVVVVFRALGTVAAKDILEHICYDSNDSEMVEEFKASIEEAFVIQDR---- 106

Query: 318  RNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSL----HGTKQKARFLGYMVKCL 368
              +L ++ K  +GTT             E +     P +    H   +K  FLGYMV  L
Sbjct: 107  EVSLDFIGK--RGTTVGVNREKRIKYAREILQKEFLPHVGTQPHNETRKTYFLGYMVHRL 164

Query: 369  LQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPI 428
            LQ    RR  D+RD +  KRL+LAG LL    +       + M + LQ+ +   R    +
Sbjct: 165  LQCVLERRDQDDRDHYGRKRLDLAGPLLAMLFRNLFKKMTRDMTRYLQKCIESRREFN-L 223

Query: 429  EYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQY 488
               L ++ +T GL  + +TG W    K  +  +G+   L R     TL  LRR    +  
Sbjct: 224  SMALKSNTITAGLKYSLATGNWGDQKKAMQSRTGVAQVLNRYTFASTLSHLRRCNTPIGR 283

Query: 489  TGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGME 547
             GK+   R  H +HWG +C   TP+G+ CGLVKNL +   ++  S    I   L    ME
Sbjct: 284  DGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMAHITVGSDSGSILMFLEEWAME 343

Query: 548  KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEV 607
             L +    SL    K+FV+G W+G+ K+++   + L++ RRR E   ++ I  D  + E+
Sbjct: 344  NLEELVGDSLADSTKIFVNGVWVGIHKEAVRLAATLKQLRRRLEFSYELSIVHDVREREI 403

Query: 608  RIFMDAGRILRPLLVVENM------GKIKSLEGKNY------TFQALLDHGIIELVGTEE 655
            RI  DAGR+ RPL VV +M        + ++E +         +  LL  GI+E +  EE
Sbjct: 404  RILTDAGRVCRPLFVVNHMRLALTKPVVAAIEARRLGERDAVRWHDLLSEGIVEYLDAEE 463

Query: 656  EEDCCTAWGIKYL-------------LKD---IEDKKPI---KFTHCELDMSFLLGLSCG 696
            EE          L              KD   I  ++ I    +THCE+  S +LG+   
Sbjct: 464  EETAMIVMSPHELDESRRFVHTGQLPPKDDGRIRSRRNIGITTWTHCEIHPSMILGICAS 523

Query: 697  IIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLG 756
            I+PF +H+ + R  YQS     QA+G   TN  +R+DTL++ L+YPQ+PL  T   +   
Sbjct: 524  IVPFPDHNQSPRNTYQSAM-GKQAMGILLTNYQVRMDTLANLLYYPQKPLATTHAME--- 579

Query: 757  KPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAE 816
                     +   EL  GQNAIVA+  + GYNQEDSL+MN++S++RG+FRS   RSY  E
Sbjct: 580  --------YIKFSELPAGQNAIVAILCYTGYNQEDSLIMNQSSIDRGLFRSIFFRSYMDE 631

Query: 817  VDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGK------- 869
             D   M+   R  +       ++ KIG  + LDDDG    G  +   DI+IGK       
Sbjct: 632  EDKLGMRTMGR-FEKPSRASTLRLKIGTYEKLDDDGLIAPGTRVTGDDIIIGKTTPIPIA 690

Query: 870  --------YADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFS 921
                     A +  D S  L+ TE G+V +V+L++N DG  F  V +R  R P +GDKF+
Sbjct: 691  SLELGQRTLAHTKLDASKPLRATESGIVDQVLLTTNGDGFKFVKVRVRSTRVPQIGDKFA 750

Query: 922  SMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKG 981
            S HGQKG +G + + E+ PFT  GIVPD++INPHA PSR T G L+E  L K +A L   
Sbjct: 751  SRHGQKGTIGIVYTSEDMPFTADGIVPDLIINPHAIPSRMTIGHLIECLLSK-LATL--- 806

Query: 982  ICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRL 1041
               G    A+PF   +VDAI+ +L   G+   G E +Y+G +G  + S +F GPT+YQRL
Sbjct: 807  --VGTAADASPFTDVTVDAISAELFSLGYHSRGLEVMYNGHSGRKLYSQVFFGPTYYQRL 864

Query: 1042 IHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKF 1076
             HM +DK+  R  GP+  LTRQPV  R R GG++F
Sbjct: 865  KHMVDDKIHSRARGPLQILTRQPVEGRSRDGGLRF 899


>gi|387191409|gb|AFJ68613.1| DNA-directed RNA polymerase III subunit RPC2 [Nannochloropsis
            gaditana CCMP526]
 gi|422292684|gb|EKU19986.1| DNA-directed RNA polymerase III subunit RPC2 [Nannochloropsis
            gaditana CCMP526]
          Length = 1197

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 371/1227 (30%), Positives = 581/1227 (47%), Gaps = 180/1227 (14%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW-RYASMRFGQV 91
            F    GL+   I+S++ F+   ++   ++     +    DP       W RY  +  G+ 
Sbjct: 55   FLQLRGLMRQHIDSFDFFVNREIKDIVNAASNRELRSEADPKF-----WLRYTDVHVGEP 109

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
            ++D  ++ +        + P   RL++ TYS+ + V V             ++  GR+  
Sbjct: 110  SVDDDAYVSSR------VTPFQCRLRDCTYSAPITVDV-------------RYTRGRQIV 150

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
            +++ V+        IGRIP+M++S  C + G       EK +C +D GGYFI+KG E+V 
Sbjct: 151  VKRGVM--------IGRIPIMLRSCKCILAGRSEAELAEKKECPYDPGGYFIVKGVERVI 202

Query: 206  VAQEQICLKRLWVSN----SMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKV-LSVY 260
            + QEQ+   R+ +      ++  ++   + +++ R  +          +K G KV L   
Sbjct: 203  LMQEQLSKNRVIIEEDNKGNVSASITSSTHDRKGRSNIF---------VKNGTKVYLKNN 253

Query: 261  FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNK--CDEFRKGR 318
             L  ++PI ++  A+G+ SD+EIV ++  + E   +L+    S+ +  +   C + +   
Sbjct: 254  LLGDDVPIVVVLKAMGMQSDQEIVCMVGDSPE---MLDAFAPSLEEPYHLGICTQAQ--- 307

Query: 319  NALKYVDKLIKGTT------------------FPPGESTEECMNTYLF---PSLH-GTKQ 356
             AL+Y+   I+ TT                    P E   E + + +    P ++   + 
Sbjct: 308  -ALRYIGAKIRNTTQNRGPGPSGMGFAFYRRASSPEEEAREVLASVILNHVPVINFDFRT 366

Query: 357  KARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQ 416
            K  F+ ++++ +L  +  R + D++D + NKRLELAG+LL    +        ++ K   
Sbjct: 367  KCIFVCHVIRRVLLTHRDRSQLDDKDYYGNKRLELAGQLLSLLFEDLFKRLNVQLKKQAD 426

Query: 417  RDLYGDRTVRPIEYY--LDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQ 474
            + L      +  +    +    +TNG  +A +TG W     R +R  G+   L R + + 
Sbjct: 427  QGLSKPNRTQSFDVIKCIRTDTITNGFIQAIATGNWKLQRFRMDR-QGVTQVLTRLSYIS 485

Query: 475  TLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SI 533
             L  + R   Q + T KV   R   PS WG IC   TP+GE CGLVKNL +   V+T   
Sbjct: 486  CLGMMTRINSQFEKTRKVSGPRSLQPSQWGMICPADTPEGEACGLVKNLALLAHVTTDEE 545

Query: 534  LEPIFEQLFNSGME--KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKE 591
             EPI +  F+ G+E   L   A  +    + VF++G  +G     L FV  LR  RR+  
Sbjct: 546  SEPIRKLCFDLGIEDVTLLSGAEINASSNYLVFLNGLIVGCHSRPLRFVRLLRLLRRKGL 605

Query: 592  LPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE-------NMGKIKSLEGKNYTFQALLD 644
            +   V +   E+Q  + I  D GR+ RPLLV E       NM  ++ L     T   L+ 
Sbjct: 606  VAEFVSVCLHEVQRAIYIATDGGRVCRPLLVCEKGVPRLTNM-MMRQLSSGLLTLAELIR 664

Query: 645  HGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHD 704
             G++E V   EE +C  A          + +  +K TH E+D   +LG+  G+IP+ +H+
Sbjct: 665  CGVVEYVDVNEENNCLIALA--------QTQLTVKHTHMEIDPLTVLGVVAGLIPYPHHN 716

Query: 705  HARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNH 764
             + R  YQ      QA+G    N   R+D+L + + YPQ+PL  T   D           
Sbjct: 717  QSPRNTYQC-AMGKQAMGTVALNQYERLDSLLYAMVYPQKPLVTTRTLD----------- 764

Query: 765  ILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEV---DNKE 821
            ++   EL  GQNAIVAV  + GY+ ED++V+N+ASL+RG  R   +R ++  +    N  
Sbjct: 765  LVNFNELPGGQNAIVAVMSYSGYDIEDAVVLNKASLDRGFGRCLILRKHQTSLRKYANGA 824

Query: 822  MQVKRRSSDDMV---------------NFGKIQS-----KIGRVDSLDDDGFPFIGANLQ 861
                R   +D                 N     S     ++ R ++LD DG   +G  L 
Sbjct: 825  ADNLRGPPEDTAAVCSGMGGEPSAAQSNLAGAYSIRRDPRLRRFEALDKDGICQVGERLG 884

Query: 862  SGDIVIGK-----YAD----SGADHS------IKLKHTERGMVQKVVLSSNDDGKNFSVV 906
            +G ++I K      AD    SGAD +      +  K      V +V+++SN+ G     V
Sbjct: 885  NGSVMINKESPISVADLNMGSGADPTPFKPTPLSYKGPAPSHVDQVLITSNEGGDLLVKV 944

Query: 907  SLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQL 966
            S+RQ R P +GDKFSS HGQKGV G + +QE+ PF   GI PD+++NPH FPSR T G+L
Sbjct: 945  SVRQCRRPEVGDKFSSRHGQKGVCGIIVAQEDMPFNDDGICPDLIMNPHGFPSRMTVGKL 1004

Query: 967  LEAALGKGIAALGKGICSGLKRYATPF-----ATPSVDAITEQLHRAGFSKWGTERLYDG 1021
            +E   GK    +G+      + Y T F     +   V A +  L   GFS  G E +  G
Sbjct: 1005 IEFVAGKASVMIGR------QAYGTAFGEDFGSADRVVACSGALVENGFSYVGKEIITSG 1058

Query: 1022 RTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMER 1081
             +GE + + IF GP FYQ+L HM  DK+  R  GP   LTRQP   R R GG++ GEMER
Sbjct: 1059 TSGEPLLTYIFQGPVFYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMER 1118

Query: 1082 DCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGD 1141
            DCLI +GA++ L ERL   SD++   +C +C             G      +C+ C S +
Sbjct: 1119 DCLIGYGASSLLTERLMISSDAFTATVCERC-------------GLLGYAGWCQSCRSSE 1165

Query: 1142 DIVKANVPYGAKLLCQELFSMGITLKF 1168
             +    +PY  KLL QEL SM +  K 
Sbjct: 1166 RMADIRLPYACKLLFQELQSMNVIPKL 1192


>gi|392577194|gb|EIW70323.1| hypothetical protein TREMEDRAFT_29095 [Tremella mesenterica DSM 1558]
          Length = 1128

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 363/1202 (30%), Positives = 556/1202 (46%), Gaps = 168/1202 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQK--AFDSFGETIVEPGYDPSKKGEGEWRYASMRFG 89
            +F    GLV   ++S+N F+   ++   A +S   + V P +          RY  +R G
Sbjct: 30   AFLQVKGLVKQHLDSFNYFVNVDIKAILAANSIVTSDVNPHF--------FIRYTDIRIG 81

Query: 90   QVTLDKPSFFAGNGGDEHD----MFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
            +              D+H     + P   RL++++Y++ ++V +++          DK K
Sbjct: 82   RPMRK----------DQHHQDSIVTPMECRLRDISYAAEIRVDIEY-------TYEDKLK 124

Query: 146  TGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIK 199
              +               I+IG++PVM++SDLC +KG         G+C  D GGYF++K
Sbjct: 125  KQK--------------GILIGKLPVMLRSDLCHLKGKSERELARMGECPKDPGGYFVVK 170

Query: 200  GAEKVFVAQEQICLKRLWVSNSM--GWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVL 257
            G EKV + QEQ+   R+ V      G  +A  + +  +R++        +   K     L
Sbjct: 171  GTEKVILVQEQLSKNRIIVMRDPKDGAVIAECTSSTHDRVV------KTYVITKNKRLYL 224

Query: 258  SVYFLSTEIPIWILFFALGVSSDKEIVNLI-----------DFTCEDCSILNILFASIHD 306
                    IPI +   A+GV++DKEI+ LI             + E+ S L +  A    
Sbjct: 225  RHNSFKELIPIVVAMKAMGVTADKEIIQLICGSDERYQEAFGPSLEEASRLKVYTA---- 280

Query: 307  ADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGT----KQKARFLG 362
               +C E+  G       +K  +G    P E   + +   +   +       + K  +L 
Sbjct: 281  --KQCAEW-IGLRVSPGQEKEDRGQKLAPSEVAMQALAAMVLGHVLVRNMFFRPKCIYLA 337

Query: 363  YMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRD 418
             M + +L A    +  D+RD   NKRLELAG+LL    E   K + +  R+RM K L++ 
Sbjct: 338  TMARRVLMASIDEKMVDDRDYVGNKRLELAGQLLSLLFEDSFKTYNSDLRRRMDKILEKP 397

Query: 419  LYGDRTVRPIEYYLDAS--------ILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRA 470
               +R        LDAS         +T+   R+ STG WS      ER +G+   L R 
Sbjct: 398  ---NRATP-----LDASNILAQNGDSITSAFVRSISTGNWSLKRFHVER-AGVTHVLSRL 448

Query: 471  NPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVS 530
            + +  L  + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++
Sbjct: 449  SFIAALGMMTRISSQFEKTRKVSGPRALQPSQWGVLCPSDTPEGEACGLVKNLALMTHIT 508

Query: 531  TSILE-PIFEQLFNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVSELRRKR 587
            T + E P+ +  F  G + +       + G+  + + ++G  IG+      FV   R+ R
Sbjct: 509  TDVPEGPLVDYAFTYGAQDINTFTGVGMYGRGVYLIQINGSLIGLTNHPKKFVQTWRKLR 568

Query: 588  RRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQA 641
            R       V I  +     + I  D GRI RP+++VEN         I+ L+    TF  
Sbjct: 569  RAARFSEFVSIYMNHHHKIIYIASDGGRICRPMIIVENGRPRVTSEHIRLLKEGKVTFDH 628

Query: 642  LLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFA 701
             L  G++E +   EE D   A        +IE+      TH E++   +LG   G+IP+ 
Sbjct: 629  FLRSGLVEYLDVNEENDSLIAC----YEHEIEEGT----THLEIEPFTILGAVAGLIPYP 680

Query: 702  NHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYG 761
            +H+ + R  YQ      QAIG    N   R+DTL + + YPQ+P+ +T   +        
Sbjct: 681  HHNQSPRNTYQC-AMGKQAIGAIGYNQLNRIDTLLYLMTYPQQPMVKTKTIE-------- 731

Query: 762  HNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKE 821
               ++   +L  GQNA VAV    GY+ ED+L++N+AS++RG  R   ++  K  +  + 
Sbjct: 732  ---LIEYDKLPAGQNATVAVMSFSGYDIEDALILNKASVDRGFGRCHVLK--KQTIPMRH 786

Query: 822  MQVKRRSSDDMVNFGKIQSKIGRVDSLDD-DGFPFIGANLQSGDIVI---------GKYA 871
             Q     + +   +     +     S+D  DG    G+ +  GD+++         G   
Sbjct: 787  FQ---NGTSERTAYPSDPLRPEAYASVDKADGVTSPGSTVYQGDVLVHRETPIDTRGPMT 843

Query: 872  DSGADHSIKLKHTERGMVQ--KVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGV 929
             +    +  + H     VQ  KV+L+  +D     +++ RQ R P LGDKFSS HGQKGV
Sbjct: 844  QAAVFKATPITHKTPEPVQIDKVMLTEGEDSPLLKILT-RQTRQPELGDKFSSRHGQKGV 902

Query: 930  LGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRY 989
             G +  Q + PF  QGI PDI++NPH FPSR T G+++E   GK       G+ +G  +Y
Sbjct: 903  CGLIVPQTDMPFNDQGICPDIIMNPHGFPSRMTVGKMIELLAGKA------GVLAGQLQY 956

Query: 990  ATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKV 1049
             T F    V+ ++  L   GFS  G + L  G TGE + + ++ GP +YQ+L HM  DK+
Sbjct: 957  GTAFGGSKVEDMSRILIENGFSYAGKDMLTSGITGEPLEAYVYFGPIYYQKLKHMVMDKM 1016

Query: 1050 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHIC 1109
              R TGP   LTRQP   R + GG++ GEMERDCLI +GA   L ERL   SD+++  +C
Sbjct: 1017 HARPTGPRANLTRQPTEGRSKDGGLRLGEMERDCLIGYGATQLLLERLMISSDAFETQVC 1076

Query: 1110 RKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFD 1169
              C             G      +C  C +G  IVK  +PY AKLL QEL  M I  K  
Sbjct: 1077 ETC-------------GLLGYNQWCPKCKTGKGIVKITLPYAAKLLIQELMGMNILPKLC 1123

Query: 1170 TE 1171
             E
Sbjct: 1124 ME 1125


>gi|167525657|ref|XP_001747163.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774458|gb|EDQ88087.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1097

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 366/1172 (31%), Positives = 554/1172 (47%), Gaps = 138/1172 (11%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I S+N FI+  ++K   +  +  V    DP+           +R+  +
Sbjct: 16   AFLKMKGLVRQHIESFNHFIEVDIKKILAANAK--VTSDNDPN---------FYVRYLDI 64

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             +  PS   G   + + + P   RL++ TY+  + V +++             + G E  
Sbjct: 65   RVLPPSINEGFKTN-NTVTPMQCRLRSATYAGDIVVDLEY-------------RRGHETL 110

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVF 205
                       N  IGR+P+M++S+LC + G         G+C  D GGYF++ G EKV 
Sbjct: 111  --------RVENTRIGRMPIMLRSNLCVLNGASHAKQAKYGECPHDPGGYFVVSGTEKVI 162

Query: 206  VAQEQICLKRLWVSNSMG---WTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFL 262
            + QEQ+   R+ V    G    +V   S +++ +  +           K  +  + V  L
Sbjct: 163  LIQEQLSKNRIIVEEFKGDLTASVTSSSADRKTKTTIIF---------KNDQFYMLVNTL 213

Query: 263  STEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALK 322
            S  +P+ ++  A+GV SD+EI+ LI    E+ ++L +L  S+    N  + F + + AL 
Sbjct: 214  SEAVPLVVVLKAMGVISDQEIMQLIG--AEEEAML-VLGPSVERCAN-LNIFTQNQ-ALA 268

Query: 323  YVDKLIKGTTFPPGESTEECMNTYLFPSL---------HGTKQKARFLGYMVKCLLQAYS 373
            Y+   IK      G  T+E M   L  S+            + KA FL  MV+ ++ +  
Sbjct: 269  YLGSKIKLLRTYGGARTKEDMGRDLLSSVVLAHVPCENFDFRAKAVFLSLMVRRVIISM- 327

Query: 374  GRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR-PIEYYL 432
            G +  D+RD   NKRLELAG L+    +    +   ++ +    +L  +R        ++
Sbjct: 328  GDKMTDDRDYLGNKRLELAGSLMSLLFEDTFKNFNAQLKRQADVNLSKNRVAAFDATNFM 387

Query: 433  DASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKV 492
               I+TN L  A S+G W     + ER  G+ + L R + + +L  + R   Q + T KV
Sbjct: 388  REDIITNSLRNAISSGNWILKRFKMER-HGVTSVLSRLSFIASLGMMTRITSQFEKTRKV 446

Query: 493  GDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLVSTSILEPIFEQLFNSGMEKL-- 549
               R   PS WG +C   TP+GE CGLVKNL + T + +    EP+ +  +N G+E L  
Sbjct: 447  SGPRSLQPSQWGMLCPADTPEGEACGLVKNLALMTHVTNDDEEEPLVKLAYNLGVESLHL 506

Query: 550  ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRI 609
             +   +     F VF++G  +GV +     V   R  RR   +   V I  ++    V I
Sbjct: 507  INGEEFGRSSTFLVFINGLMLGVTRRPRIMVRNFRLLRRSGRISPFVSISLNKKHRCVYI 566

Query: 610  FMDAGRILRPLLVVENMGKIK----SLEGKNY---TFQALLDHGIIELVGTEEEEDCCTA 662
              DAGR  RP ++VEN GK K     LE  N    TF   + +G++E +   EE D    
Sbjct: 567  ASDAGRTCRPYIIVEN-GKSKVRPHHLEELNMGITTFDDFVINGLVEYLDVNEENDS--- 622

Query: 663  WGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIG 722
                 LL   E+      TH E++   +LG   G+IP+ NH+ + R  YQ      QA+G
Sbjct: 623  -----LLALYENNIEADTTHLEIEPFTILGACAGLIPYPNHNQSPRNTYQC-AMGKQAMG 676

Query: 723  FPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVN 782
                N   R+DTL + L YP RP+ +T   +           ++   +L  GQN IVAV 
Sbjct: 677  VIALNYQQRIDTLLYSLVYPMRPVVKTRTIE-----------LIDFEKLPAGQNPIVAVM 725

Query: 783  VHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKI 842
               GY+ ED+ VMNRAS +RG  R          V   +MQ   +  +   N   I    
Sbjct: 726  SFSGYDIEDATVMNRASFDRGYGRC---------VVYSKMQTSLKKYNG--NLTDIIRPA 774

Query: 843  GRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTE---RGMVQK------VV 893
             R ++ +  G   +G  + + D+++ K         I    T+   +G V K      V+
Sbjct: 775  PRDEAGNAKGIVAVGQPMYNRDVLVNKQTPIKRGTEIDYASTQVRYKGTVGKDAYCDQVM 834

Query: 894  LSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVIN 953
            +SSN++      + +R  R P LGDKFSS HGQKGV G + +QE+ PF   G+ PD ++N
Sbjct: 835  VSSNNEDSMLIKIRVRSTRIPELGDKFSSRHGQKGVCGLIVNQEDMPFNDAGVCPDKIMN 894

Query: 954  PHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKW 1013
            PH FPSR T G+L+E    K       G+ +G   Y T F   ++  +   L + G++  
Sbjct: 895  PHGFPSRMTVGKLMEFCGAKA------GVLNGNYNYGTAFGGTTIPEMCNTLLKHGYNYH 948

Query: 1014 GTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGG 1073
            G + L  G TGE + S IF+GP FYQ+L HM  DK+  R+ GP+  LTRQP   R R GG
Sbjct: 949  GKDYLTSGITGEPLESYIFMGPVFYQKLKHMVMDKMHARSQGPMTLLTRQPTEGRAREGG 1008

Query: 1074 IKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPY 1133
            ++ GEMERDCLI HG++  L ERL   SD++++H C +C             G      +
Sbjct: 1009 LRLGEMERDCLIGHGSSMLLLERLMISSDAFEVHACSQC-------------GLLGSAGW 1055

Query: 1134 CRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
            C+ C S   I K  +PY  KLL QEL SM I 
Sbjct: 1056 CQYCKSSRGISKLQLPYACKLLFQELQSMNIV 1087


>gi|225464023|ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Vitis
            vinifera]
          Length = 1142

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 364/1195 (30%), Positives = 582/1195 (48%), Gaps = 144/1195 (12%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
            F    GLV   ++S+N F+K  ++K   +  + IV    DPS           +RF  V 
Sbjct: 28   FLKVRGLVKQHLDSFNYFVKTDIKKIVRA-NDRIVS-SVDPS---------IYLRFKDVR 76

Query: 93   LDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYI 152
            + +PS      G    + P   RL +MTY++ + V +++              TG   ++
Sbjct: 77   IGEPSITVD--GISEKLNPHTCRLSDMTYAAPILVNIEYI-------------TG--SHV 119

Query: 153  QKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVFV 206
            QK  +  E  +++IGR+P+M++S  C +   ++      G+C  D GGYF++KG EKV +
Sbjct: 120  QKTRV--EKNDVVIGRMPIMLRSCCCVLYKKDEAELARLGECPLDPGGYFVVKGTEKVIL 177

Query: 207  AQEQICLKRLWVSN----SMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKV-LSVYF 261
             QEQ+   R+ +      ++  +V   +E+ +++ ++          +   EK+ L +  
Sbjct: 178  IQEQLSKNRIIIDTDKKGNINASVTSSTESTKSKTVI----------VMEKEKIWLQLNQ 227

Query: 262  LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNAL 321
             +++IPI I+  A+G+ SD+E+V ++     +     +L  S+ +  +        + AL
Sbjct: 228  FTSKIPIMIVMKAMGMESDQEVVQMVG---RNPRYSALLLPSMEECASH--GIYTQQQAL 282

Query: 322  KYVDKLIKGTTF--PPGESTEECM----NTYL--FPSLHGT-KQKARFLGYMVKCLLQAY 372
            +++++ +K   F  P  E     M    +T++   P      + K  ++  M++ ++ A 
Sbjct: 283  EFLERKVKKLPFYNPSLEKEGRGMAILRDTFIANVPVRQNNFRPKCLYVAVMLRRMMDAI 342

Query: 373  SGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDRT--VR 426
              +   D++D   NKRLEL+G+L+    E   K  I+  +K +   L +     R    +
Sbjct: 343  LNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTMISEVKKTIDAILAKPSRSSRFDFSQ 402

Query: 427  PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
             + + +  SI T GL R  STG W     R  R  G+   + R + + +L  + +   Q 
Sbjct: 403  CLRFIVRDSI-TVGLERTLSTGNWDVKRFRMHR-KGMSQVVARLSYIGSLGHMTKISPQF 460

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSG 545
            + + KV   R   PS WG +C   TP+GE CGLVKNL +   V+T   E P+    ++ G
Sbjct: 461  EKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEESPLISLCYSLG 520

Query: 546  MEKLADDASYSL--GGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDEL 603
            +E L   +   L     F +  +G  +G  +    F + LR+ RR  ++   V +  +E 
Sbjct: 521  VEDLELLSGEELHTPNSFLIIFNGLILGKHRRPQRFANALRKLRRAGKIGEFVSVFVNEK 580

Query: 604  QSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGIIELVGTEEE 656
            Q  V I  D GR+ RP+ V+ + GK       +K L     TF   L  G+IE +   EE
Sbjct: 581  QHCVYIASDGGRVCRPV-VIADKGKSRIKEHHMKELIDGVRTFDDFLRDGLIEYLDVNEE 639

Query: 657  EDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKH 716
             +   A           D KP + TH E++   +LG+  G+IPF +H+ + R  YQ    
Sbjct: 640  NNALIALYEA-------DAKP-ETTHIEIEPFTILGVCAGLIPFPHHNQSPRNTYQCA-M 690

Query: 717  SSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQN 776
              QA+G    N   R+D+L + L YPQRPL  T   + +G    G            GQN
Sbjct: 691  GKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLG-----------AGQN 739

Query: 777  AIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFG 836
            A VAV  + GY+ ED++VMN++SL+RG  R   ++ + A     E      +SD +V   
Sbjct: 740  ATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVMKKFSAVNQRYE----NNASDRIVRPL 795

Query: 837  KIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---------------DSG---ADHS 878
            K+     R+  LDDDG    G  ++  DI I K +               DS    +  +
Sbjct: 796  KVGHDAERMQILDDDGLAAPGEIIKPNDIYINKESPIITKGPLISPVGLPDSAYKPSRQT 855

Query: 879  IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQEN 938
             K    E  +V +V L S+ +        +R  R P +GDKFSS HGQKGV G +  QE+
Sbjct: 856  FKGPEGEASVVDRVALCSDKNSNLCIKFLIRHTRRPEVGDKFSSRHGQKGVCGTIIQQED 915

Query: 939  FPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPS- 997
            FPF+ +GI PD+++NPH FPSR T G+++E   GK       G+  G   Y + F  PS 
Sbjct: 916  FPFSERGICPDLIMNPHGFPSRMTVGKMIELLGGKA------GVSCGRFHYGSAFGEPSG 969

Query: 998  ----VDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
                V+ I++ L + GFS  G + +Y G TG  +++ IF+GP +YQ+L HM  DK+  R 
Sbjct: 970  HADKVETISKTLVKHGFSYSGKDFIYSGITGCPLQAYIFMGPIYYQKLKHMVLDKMHARG 1029

Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
            +GP   LTRQP   R R GG++ GEMERDCLIA+GA+  + ERL   SD +++ +CR C 
Sbjct: 1030 SGPRVMLTRQPTEGRARNGGLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQVCRVCG 1089

Query: 1114 NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
             +            K++   C  C +GD+I    +PY  KLL QEL +M +  + 
Sbjct: 1090 LLGYY-------NHKLKIGICSTCKNGDNISTMKLPYACKLLFQELQAMNVVPRL 1137


>gi|47219788|emb|CAG03415.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1171

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 356/1109 (32%), Positives = 532/1109 (47%), Gaps = 131/1109 (11%)

Query: 111  PRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIP 170
            P   RL++MTYS+ + V +++              T   Q I +  L        IGR+P
Sbjct: 128  PHECRLRDMTYSAPITVDIEY--------------TRGSQRIIRNALP-------IGRMP 166

Query: 171  VMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSN---- 220
            +M++S  C + G       +  +C  D GGYFI+KG EKV + QEQ+   R+ V      
Sbjct: 167  IMLRSSNCVLTGKTPMEFAKLNECPLDPGGYFIVKGQEKVILIQEQLSKNRIIVDQDRKG 226

Query: 221  SMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSD 280
            ++G +V   +  K++R      +M     +K G   L    LS + PI I+F  +GV SD
Sbjct: 227  AVGASVTSSTHEKKSR-----TNMI----VKQGRFYLRHNTLSEDAPIAIIFKGMGVESD 277

Query: 281  KEIVNLIDFTCEDCSILNILFASIHDADNKCDEFR--KGRNALKYVDKLIKGTTF---PP 335
            +EIV +I  T E+      + AS   +  +C + +      AL+Y+   ++       P 
Sbjct: 278  QEIVQMIG-TEEN------VMASFAPSLEECQKAQIFTQTQALRYLGNKVRRQRMWGGPK 330

Query: 336  GESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRR--------KCDNRDDFRNK 387
                EE     L  SL  T    +   +  KC+  A   RR        K D+RD + NK
Sbjct: 331  KTKMEEARE--LLASLILTHVPVKEFNFRAKCIYLAVMVRRVILAQGDNKVDDRDYYGNK 388

Query: 388  RLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR-PIEYYLDASILTNGLSRAFS 446
            RLELAG+LL    +         + K   + +   R  +  +  ++    +TNG+  A S
Sbjct: 389  RLELAGQLLSLLFEDLFKKFNSELKKIADQIIPKQRAAQFDVVKHMRQDQITNGMVNAIS 448

Query: 447  TGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKI 506
            TG WS    + +R  G+   L R + +  L  + R   Q + T KV   R   PS WG +
Sbjct: 449  TGNWSLKRFKMDR-QGVTQVLSRLSFISALGMMTRISSQFEKTRKVSGPRSLQPSQWGML 507

Query: 507  CFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKL----ADDASYSLGGKF 561
            C   TP+GE CGLVKNL +   ++T + + PI +  FN G+E +     ++ SY     F
Sbjct: 508  CPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAFNLGVEDVNLLCGEELSYP--SVF 565

Query: 562  KVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLL 621
             VF++G+ +GV +D    V   R  RR   +   V I  +     V I  D GR+ RP +
Sbjct: 566  LVFLNGNILGVIRDHQKLVGTFRLMRRAGFINEFVSISTNLTDRCVYISSDGGRLCRPYI 625

Query: 622  VVEN---MGKIKSLE--GKNY-TFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDK 675
            +V+    M K K +E   + Y  F+  L  G++E +   EE DC  A     + KD    
Sbjct: 626  IVKKGQPMVKNKHMEDLSQGYRNFEDFLHDGLVEYLDVNEENDCQIALYEHMIHKDT--- 682

Query: 676  KPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTL 735
                 TH E++   LLG+  G+IP+ +H+ + R  YQ      QA+G    N   R+DTL
Sbjct: 683  -----THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-AMGKQAMGTIGYNQRNRIDTL 736

Query: 736  SHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVM 795
             + L YPQRP+ +T   +           I+   +L  GQNA VAV  + GY+ ED+L++
Sbjct: 737  MYLLAYPQRPMVKTKTIE-----------IIEFEKLPAGQNATVAVMSYSGYDIEDALIL 785

Query: 796  NRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPF 855
            N+ASL+RG  R    ++ K  +     Q   +    M++    +  I R + LD DG   
Sbjct: 786  NKASLDRGFGRCLVYKNTKCTLRRYTNQTFDKVMGPMLD-AATRKPIWRHNILDADGICS 844

Query: 856  IGANLQSGDIVIGKYADSGA----------------DHSIKLKHTERGMVQKVVLSSNDD 899
             G  +++  +++ K   +                  D  I  K +    ++KV++SSN +
Sbjct: 845  PGERVENKQVLVNKSMPTVTQTPLEGSTQTGQPQYRDVPICYKGSTDSYIEKVMISSNAE 904

Query: 900  GKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPS 959
                  + LRQ R P +GDKFSS HGQKGV G +  QE+ PF   GI PDI++NPH +PS
Sbjct: 905  DAFLIKILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDTGICPDIIMNPHGYPS 964

Query: 960  RQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLY 1019
            R T G+L+E   GK       G+  G   Y T F    V  + E L R G++  G + + 
Sbjct: 965  RMTVGKLIELLAGKA------GVLDGRFHYGTAFGGSKVKDVCEDLIRHGYNYQGKDYVT 1018

Query: 1020 DGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEM 1079
             G TGE + + I+ GP +YQ+L HM  DK+  R  GP   LTRQP   R R GG++ GEM
Sbjct: 1019 SGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEM 1078

Query: 1080 ERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPY----CR 1135
            ERDCLI +GA+  L ERL   SD++++ +C +C  +          G +V+  +    C 
Sbjct: 1079 ERDCLIGYGASMLLLERLMISSDAFEVDVCGQCGLLGY-------SGWQVKLSHLDLECH 1131

Query: 1136 ICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
             C S   +    +PY  KLL QEL SM I
Sbjct: 1132 YCKSSCQVSSLRIPYACKLLFQELQSMNI 1160


>gi|156087649|ref|XP_001611231.1| DNA-directed RNA polymerase, beta subunit [Babesia bovis T2Bo]
 gi|154798485|gb|EDO07663.1| DNA-directed RNA polymerase, beta subunit, putative [Babesia bovis]
          Length = 1171

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 367/1198 (30%), Positives = 554/1198 (46%), Gaps = 160/1198 (13%)

Query: 38   GLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPS 97
            G+    INSYN F+   +++  ++    +++   D  KK         + F  + + +P+
Sbjct: 51   GIARQHINSYNNFVLREIKEIVNAPSNKMLKS--DACKK-------FYIEFIDINVGEPT 101

Query: 98   FFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVL 157
              + N      + P+  R++++TYS+ M V V++  Y  + V S + +            
Sbjct: 102  M-SENNNKPILLTPQLCRMRDITYSAPMYVDVEY--YNGEGVASKRVE------------ 146

Query: 158  SDETTNIIIGRIPVMVKSDLCWMKGVEK--------------GDCDFDHGGYFIIKGAEK 203
                    IGR+PVM++S +C + G  +              G+C +D GGYFIIKG EK
Sbjct: 147  --------IGRLPVMLRSCVCALSGGMRANGNVDNFELSSRLGECPYDPGGYFIIKGVEK 198

Query: 204  VFVAQEQICLKRLWVSN----SMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            V + QEQ+   R+ V      ++  TV   +   ++R  V           K  +  +  
Sbjct: 199  VILMQEQLSKCRVIVETDVKKNICATVTSATAESKSRTAVVY---------KNQKLYVRH 249

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTC--EDCSILNILFASIHDADNKCDEFRKG 317
               + ++P+ I+  A+GV++D+EI  LI      E          SI D  N+    R  
Sbjct: 250  NSFTDDVPLCIILKAMGVTTDEEIAQLIGTAGAREYLPTGGDYILSIEDLYNEGINTRM- 308

Query: 318  RNALKYVDKLIKGTTFPPG-----------------ESTEECMNTYLFPSL-----HGTK 355
             +AL YV + ++      G                 E T + +   L   +         
Sbjct: 309  -DALLYVGRKVRPRPLAKGFFTSSKERLPKTNQNLIEDTHDILTRVLLSHIPMRNCRDFS 367

Query: 356  QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRM 411
             K + L  M + +L   SG+   D++D + NKRLELAG+L+    E   K  +   +K++
Sbjct: 368  GKIKSLCLMARRVLSVASGKEPMDDKDHYGNKRLELAGQLISILFEDLFKAFLGQLKKQI 427

Query: 412  AKALQRDLY-------GDRTVRP-IEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGI 463
               L R          G++   P     L   I+T G+    STG W+    R ER SG+
Sbjct: 428  DATLTRHYEIVSNCHGGEQAKYPDCLVSLPTDIITRGMQATISTGNWNIKRFRIER-SGV 486

Query: 464  VANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNL 523
               L R + +  L  + +T  Q +   KV   R   PS  G IC   TP+GE+CGLVKNL
Sbjct: 487  SQILSRLSYISCLGMMTKTNSQFEKGRKVSKPRALQPSQLGLICPCDTPEGESCGLVKNL 546

Query: 524  GVTGLVSTS-ILEPIFEQLFNSGMEK---LADDASYSLGGKFKVFVDGDWIGVCKDSLSF 579
             +   V+T   +E + E L+  G+E    L+    +       VF++G  IGV ++    
Sbjct: 547  SLMNHVTTDGDIERLVELLYWLGVESADALSARDCFDDDRNVTVFLNGIIIGVHQNGKQL 606

Query: 580  VSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSL 632
            + ++   RRR ++   V +  +  Q EV I  D GR+ RPL+VVEN GK       +  L
Sbjct: 607  IKDVVALRRRGKISAFVSVFENYQQREVHISSDGGRLCRPLIVVEN-GKPLLTPKVLSQL 665

Query: 633  EGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLG 692
                     L   G++E +   EE +         ++    D  P K TH E+    +LG
Sbjct: 666  VEGQIPLSKLFASGVLEWIDVNEENN-------TLIVMRESDITP-KTTHLEISPMSMLG 717

Query: 693  LSCGIIPFANHDHARRVLYQSQ--KHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTM 750
            +  G+IPF NH+ + R  YQ    K S  +IG+   N   R DT+ H + YPQRPL  T 
Sbjct: 718  VVAGLIPFPNHNQSPRNTYQCAMGKQSIGSIGYNQLN---RCDTILHLMVYPQRPLVTTK 774

Query: 751  ISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHI 810
                          ++   +L  GQN IVAV  + GY  ED++V+N+AS ERG  R   +
Sbjct: 775  AI-----------QLVNFDKLPAGQNVIVAVMSYQGYEIEDAVVINKASSERGFSRCYSL 823

Query: 811  RSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKY 870
            R    E++      +R     + N  +I + +  VD L  D    +G  ++  D ++ K 
Sbjct: 824  RRVTVEIEKLNHAAERPGG--LNNRPQI-TNVTPVDDLTGDSVIGVGQKVKKDDTLLKKL 880

Query: 871  ADSGADH----SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQ 926
              +         IK +  +   V +V+  +         + LRQVR P +GDK+SS HGQ
Sbjct: 881  TQTSTGQIKVTDIKYQFNQPAYVDRVMCITTIAESVMYKIMLRQVRLPEIGDKYSSRHGQ 940

Query: 927  KGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGL 986
            KGV+G +ESQEN PF+  G VPD+++NPH FPSR T G++LE    K        + +G+
Sbjct: 941  KGVVGLIESQENLPFSEHGWVPDLIMNPHGFPSRMTVGKMLELVAAKA------AVLNGI 994

Query: 987  KRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSE 1046
                TPF   S+ AI   L + GF   G E LY G TGE + +LIF GP +YQ+L HM  
Sbjct: 995  FEDGTPFEADSLPAIERSLIKKGFHPAGKEILYSGITGEPLETLIFTGPMYYQKLKHMVS 1054

Query: 1047 DKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQM 1106
            DK+  R  GP   LTRQP   R + GG++ GEMERDCLIA+GA+  L ERL   SD +QM
Sbjct: 1055 DKIHARAVGPRQSLTRQPTEGRSKDGGLRLGEMERDCLIAYGASGLLVERLMLSSDVFQM 1114

Query: 1107 HICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
             +C +C  +                 +C  C          +PY  KLL QEL +M I
Sbjct: 1115 DVCHQCGFIG-------------YDGWCAYCKQRGQTATVAIPYACKLLFQELQAMNI 1159


>gi|399216789|emb|CCF73476.1| unnamed protein product [Babesia microti strain RI]
          Length = 1146

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 372/1217 (30%), Positives = 580/1217 (47%), Gaps = 175/1217 (14%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
            +F EYGL   QI S+N F+++G+++  ++    I+    D             + F  + 
Sbjct: 10   YFLEYGLAMQQIRSFNHFVQSGIREILNAPSNKIIRTEIDTK---------FYIEFLDIR 60

Query: 93   LDKPSFFAGNGGDEHDMF-----PRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
            +  P++       E DM      P   R++++TYS+ + V V++              T 
Sbjct: 61   IGLPNY-------EEDMVTSSLVPNICRIRDLTYSAPIYVDVEY--------------TR 99

Query: 148  REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGA 201
                I+K+       N  IGR+PVM+KS +C ++G ++      G+C  D GGYFIIKG+
Sbjct: 100  GSDIIRKQ-------NAEIGRLPVMLKSAICSLEGKDELELQKLGECPHDPGGYFIIKGS 152

Query: 202  EKV-FVAQEQIC---------LKRLWVSNSM---GWTVAYKSENKRNRLIVR-------- 240
            EKV F+    I          L + +++ S    G+ +  + +  +NR++V         
Sbjct: 153  EKVTFILWTNIYYFFKLMFSKLIQTFINKSYRYYGFVIVIQEQLSKNRILVERDVKHNIC 212

Query: 241  -LVDMSKFEDIKGGEKVLS---VYF----LSTEIPIWILFFALGVSSDKEIVNLIDFTCE 292
              +  +  E       VL    +Y      + ++PI I+F A+G+ S +EI  +I     
Sbjct: 213  ATLTSATAESKSRASVVLKSEKIYLRHNSFTDDLPISIIFMAMGIESTQEIAEIIG---A 269

Query: 293  DCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPG---------------- 336
              S    ++ S+       ++ R  ++AL ++   I+      G                
Sbjct: 270  GHSYPRSVYLSLSPL--IANDIRTIKDALLFIGSRIRSRIMARGFFAPVKEKVAKSDTVI 327

Query: 337  -ESTEECMNTYLFPSLHGTKQKAR-------FLGYMVKCLLQAYSGRRKCDNRDDFRNKR 388
             +   + ++  + P +   K K+R        L  MV+ +L         D++D + NKR
Sbjct: 328  IKEAYDILDRVILPHVPMKKSKSRDYSEKITCLALMVRRVLNCAYKDAPLDDKDHYGNKR 387

Query: 389  LELAGELL----ERELKVHIAHARKRMAKALQRDLY----GDRTVRPIEYY-LDASILTN 439
            LELAG+L+    E   K  I   +K++ ++L+R +     G  T  P  +  L   I+T 
Sbjct: 388  LELAGQLVSILFEDLYKKFIFQVKKQVEQSLERYIQSRSSGSDTTYPDTFRNLPHDIITR 447

Query: 440  GLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPH 499
            G+  + STG W+    + ER SG+   L R N + T+  + R   Q +   KV   R   
Sbjct: 448  GMQSSLSTGNWNIKRFKMER-SGVTQILSRLNYMATIGMMMRINSQFEKGRKVSGPRALS 506

Query: 500  PSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFNS-GMEKLADDASYSL- 557
            PS WG IC   TP+GE+CGLVKNL +   V+        E+L  S G+      A+  L 
Sbjct: 507  PSQWGFICPCDTPEGESCGLVKNLALATHVTNDENPQYLERLLYSLGLFPSKYVATRDLF 566

Query: 558  -GGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRI 616
                + VF++G  +GV  ++   +  +R+ RR  ++   V I  D+  S V I  D GR+
Sbjct: 567  DPRNWLVFLNGLLVGVHSNAELLMDNIRKLRRAGKIGEFVSIYCDD--SSVYISSDGGRV 624

Query: 617  LRPLLVVENMGKIK--------SLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYL 668
             RPL++VE+ GK K         + GK      LL  GI+E +   EE +         L
Sbjct: 625  CRPLIIVES-GKSKLTNEILDQVIAGK-LKLNQLLKGGILEWIDVNEENNL--------L 674

Query: 669  LKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNP 728
            +    ++   K TH ELD   +LG+  G+IP+ +H+ + R  YQ      QAIG    N 
Sbjct: 675  IATKPNEITCKTTHLELDPFTILGIISGLIPYPHHNQSPRNTYQC-GMGKQAIGSVGYNQ 733

Query: 729  SIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYN 788
              R DT+ H L YPQ+PL  T               +    +L  GQNAIVAV  + GY 
Sbjct: 734  FSRCDTILHTLVYPQKPLVTTRTVK-----------LTAFEKLPAGQNAIVAVMSYGGYE 782

Query: 789  QEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSL 848
             ED++V+N+AS+ERG  R   ++    E+     +    SSD      ++ S I     +
Sbjct: 783  IEDAIVINKASVERGFGRCISMKRMSVELK----KYHTGSSDIAAPTNQLASNIN-YQGI 837

Query: 849  DDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSL 908
            + DG   +G  L +  I++ K         +K K      + +V+++    G     + L
Sbjct: 838  ESDGIVRVGHELSNDQIIVSKITQGQKITPVKYKQNTSSHLDRVIVTDTTSGCRVYKMML 897

Query: 909  RQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLE 968
            R+ RSP LGDKFSS HGQKGV+G + +QE+ PF+  G VPD+++NPH FPSR T G+LLE
Sbjct: 898  RKFRSPELGDKFSSRHGQKGVVGLIANQEDLPFSSNGWVPDLIMNPHGFPSRMTVGKLLE 957

Query: 969  AALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVR 1028
                K        +C+G++   T FA P +++I + L + GFS  G E LY G TGE + 
Sbjct: 958  LVASKAT------VCTGIELDGTAFADPQMESIWKILLQHGFSPSGKELLYSGFTGEAIE 1011

Query: 1029 SLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG 1088
            + IF GP +YQ+L HM +DK+  R  GP   LTRQP   R + GG++ GEMERDCLI++G
Sbjct: 1012 TYIFTGPIYYQKLKHMVQDKIHARGRGPRQLLTRQPTEGRSKDGGLRLGEMERDCLISYG 1071

Query: 1089 AAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANV 1148
             +  + ERL   SD  ++ +C KC  +          G K    YC++ +S    V  ++
Sbjct: 1072 TSNLILERLMLSSDVCRVMVCNKCGLI----------GYKSDCLYCKLSNS---CVPIHM 1118

Query: 1149 PYGAKLLCQELFSMGIT 1165
            PY  KLL  EL +M I 
Sbjct: 1119 PYACKLLFHELQTMNIA 1135


>gi|345498326|ref|XP_001607116.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Nasonia
            vitripennis]
          Length = 1135

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 364/1200 (30%), Positives = 557/1200 (46%), Gaps = 168/1200 (14%)

Query: 28   KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMR 87
            K   +F    GLV   I+S+N FI   ++K   +  + + +   DP            ++
Sbjct: 32   KLVPAFLQGKGLVKQHIDSFNYFINVEIKKIVKANEKVLSDA--DP---------LFYVK 80

Query: 88   FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
            +  V++  P    G         P   RL+++ YS+ + V +++               G
Sbjct: 81   YLNVSIGTPDIEEGFSVSRPTT-PHECRLRDLNYSAPITVDIEYM-------------RG 126

Query: 148  REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGA 201
             +  I+         N++IGR+P+M++S  C +         +  +C  D GGYFII G 
Sbjct: 127  HQPIIR--------NNLLIGRMPIMLRSSNCVLSEKSNFELAKMNECPHDPGGYFIINGQ 178

Query: 202  EKVFVAQEQICLKRLWVS--NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            EKV + QEQ+   R+ +   N      +  S  +  +    ++        + G+  L  
Sbjct: 179  EKVILIQEQMLRNRIILEEDNKNCIVASCNSATQERKTKTNVIG-------RAGKYYLRH 231

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLI----DF------TCEDCSILNILFASIHDADN 309
                 +IP+ I+F A+G+  D+EIV LI    +F      + E+C  LNI+      A N
Sbjct: 232  NIFQDDIPVVIIFKAMGIVCDQEIVQLIGTEENFMKKIGASLEECHALNIV------AQN 285

Query: 310  KCDEFRKGRNALKYVDKLIKGTTFPPGES--TEECMNTYLFPSLHGT-------KQKARF 360
            +         ALKY+    K   F   +S  T+E  +      L          K KA +
Sbjct: 286  Q---------ALKYLGNKRKQKRFTVVKSSITDEMKDVLASNILSHVPVIDFNFKLKATY 336

Query: 361  LGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLER-----------ELKVHIAHARK 409
            L  MV+ ++ A +  +  D+RD + NKRLELAG LL             +LK  IA    
Sbjct: 337  LALMVRKVMIAQTDGKLVDDRDYYGNKRLELAGSLLALMFEDLFKRFNWDLKT-IADKNI 395

Query: 410  RMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGR 469
               KA Q D         I  ++    +TNGL+ A S+G W+    + ER  G+   L R
Sbjct: 396  PKIKAAQFD---------IVKHMRHDSITNGLAVAISSGNWTIKRFKMER-HGVTQVLSR 445

Query: 470  ANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLV 529
             + +  L  + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   +
Sbjct: 446  LSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEGCGLVKNLALMTHI 505

Query: 530  STSILE-PIFEQLFNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVSELRRK 586
            +T I E PI    FN G+E +       +  K  + VF++G+ +G+ K+    V+  R  
Sbjct: 506  TTEIEEEPIMRLAFNLGVENVNILGGEEINNKDVYMVFLNGNILGIVKNYYRLVTVFRML 565

Query: 587  RRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQ 640
            RR+  +   V I        V+I  D GR+ RP ++VE+         IK LE    +F+
Sbjct: 566  RRKGLVNQFVSIYPQHQHRCVQISSDGGRLCRPYIIVEHCQPLVKAEHIKLLEQGVRSFE 625

Query: 641  ALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPF 700
              L  G IE +   EE D   A+   ++ + I        TH E++   LLG+  G++P+
Sbjct: 626  DFLHDGTIEYLDVNEENDSFIAFSESHIKEGI--------THLEIEPFTLLGVCAGLVPY 677

Query: 701  ANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGY 760
             +H+ + R  YQ      QA+G    N   R+DTL + L YP  P+ +T   +       
Sbjct: 678  PHHNQSPRNTYQCAM-GKQAMGTIAYNQRNRIDTLMYNLVYPHAPMVKTKTIE------- 729

Query: 761  GHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNK 820
                ++   +L  GQNAIVAV  + GY+ ED+L++N+AS++RG  R    ++ K  +   
Sbjct: 730  ----LINFDKLPAGQNAIVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNAKCVLKKY 785

Query: 821  EMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSG------ 874
              Q   R     V+    +  I + D +D +G    G  + +  +++ K   S       
Sbjct: 786  ANQTCDRIMPASVD-ATTKKPIWQHDIIDGEGIAAPGEMVSNKKVMVNKSTPSANTGPVT 844

Query: 875  ---------ADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHG 925
                      + ++  K+     ++KV++SSN +      + LRQ R P +GDKFSS HG
Sbjct: 845  TGSQAQTEYKNANLVYKNPVPAYIEKVMISSNAEDAYLIKLLLRQTRRPEIGDKFSSRHG 904

Query: 926  QKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSG 985
            QKGV G +  QE+ PF   GI PD+++NPH FPSR T G+L+E   GK       G+  G
Sbjct: 905  QKGVTGLIVEQEDMPFNDSGICPDMIMNPHGFPSRMTVGKLIELLAGKA------GVLKG 958

Query: 986  LKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMS 1045
               Y T F    V+ + E+L   G++  G +  Y G TGE +++ I+ GP +YQ+L HM 
Sbjct: 959  KFHYGTAFGGSKVEDVCEELVSQGYNYLGKDIFYSGITGEPLQAYIYSGPVYYQKLKHMV 1018

Query: 1046 EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQ 1105
            +DK+  R  GP   LTRQP   R + GG++ GEMERDCLI +GA+  L ERL   SD++ 
Sbjct: 1019 QDKMHARARGPRAVLTRQPTEGRSKDGGLRLGEMERDCLIGYGASMMLIERLMLSSDAFD 1078

Query: 1106 MHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
            + +C KC             G      YC  C S   +    +PY  KLL QEL SM I 
Sbjct: 1079 VDVCNKC-------------GLMAYTGYCHSCRSSACVSTITMPYACKLLFQELQSMNIV 1125


>gi|70990294|ref|XP_749996.1| DNA-directed RNA polymerase III, beta subunit [Aspergillus fumigatus
            Af293]
 gi|66847628|gb|EAL87958.1| DNA-directed RNA polymerase III, beta subunit, putative [Aspergillus
            fumigatus Af293]
 gi|159130477|gb|EDP55590.1| DNA-directed RNA polymerase III, beta subunit, putative [Aspergillus
            fumigatus A1163]
          Length = 1200

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 362/1207 (29%), Positives = 569/1207 (47%), Gaps = 163/1207 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQ- 90
            +F    GLV   I+SYN FI+  L+K  +S   + +    D +       ++  +  G  
Sbjct: 85   AFLKVKGLVKQHIDSYNYFIEVQLKKIVES--SSTIRSDIDHT----FYIKFTDIYVGSP 138

Query: 91   VTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
               D+P     +     D+ P   RL++ TY++ + V  ++               GR++
Sbjct: 139  CRADEPQDVTPDATPS-DVSPHECRLRDTTYAAPILVNFEY-------------IRGRQR 184

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGAEKV 204
              +K         + IGR+P+M++S  C +      +      C  D GGYFI+ G EKV
Sbjct: 185  VTRK--------GVSIGRMPIMLRSSKCVLANKTPSEMTVLNECPLDPGGYFIVNGTEKV 236

Query: 205  FVAQEQICLKRLWVSNS-----MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
             + QEQ+   R+ V        +  +V   S  ++++  + L         K  +  +  
Sbjct: 237  ILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSKSYIIL---------KKDKLYVKH 287

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLI---DFTCEDCSILNI-------LFASIHDADN 309
              LS +IPI IL  A+G+ +++E++ L+   D   +D   +N        ++      D 
Sbjct: 288  NVLSEDIPIVILLRAMGIHTEQEMLLLVAGVDSLYQDDFAINFEESIKLGIYTQQQALDW 347

Query: 310  KCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLL 369
                 +  R    Y    I+       E+    + +++       + KA ++ +M + +L
Sbjct: 348  IGARIKINRKQSSYRRTHIQEAV----EAIASVIISHIEVKNMNFRPKAVYVAHMARRVL 403

Query: 370  QAYSGRRKCDNRDDFRNKRLELAGELLER-----------ELKVHIAHARKRMAKALQRD 418
             A +     D+RD   NKRLELAG+LL             ++K++I     +  +A Q D
Sbjct: 404  MAKNDPSLVDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDIKMNIDKVLNKRNRAEQFD 463

Query: 419  LYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVD 478
             +   +       + ++ +T G++RA STG WS    R ER +G+   L R + +  L  
Sbjct: 464  AWTVMS-------MHSNHITQGMNRAISTGNWSLKRFRMER-AGVTHVLSRLSYIAALGM 515

Query: 479  LRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PI 537
            + R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL +   ++T+  E PI
Sbjct: 516  MTRISSQFEKTRKVSGPRALQPSQFGMLCPADTPEGEACGLVKNLALMTHITTNDEEGPI 575

Query: 538  FEQLFNSGMEKLADDASYSLGGK-------FKVFVDGDWIGVCKDSLSFVSELRRKRRRK 590
               +F  G E +      +LGGK       + + ++G  I + +    F++  RR RR  
Sbjct: 576  KNLVFMLGAEDIM-----ALGGKQLYIPGSYTISINGTPIALTRRPKYFLNAFRRLRRMG 630

Query: 591  ELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALL 643
             +   V I  +  Q  V I  D GRI RPL+VVEN G+       ++ L      F   L
Sbjct: 631  RISEFVSIYINHHQCAVHIATDDGRICRPLIVVEN-GRSLVKDHHLEKLRDGTMQFDDFL 689

Query: 644  DHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANH 703
              G++E +   EE D   A       KDI D      TH E++   +LG   G+IP+ +H
Sbjct: 690  AQGLVEYLDVNEENDSLIAL----YEKDITDTT----THLEIEPFTVLGAVAGLIPYPHH 741

Query: 704  DHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHN 763
            + + R  YQ      QAIG   +N  +R+D++ + + YPQ+P+ ++   +          
Sbjct: 742  NQSPRNTYQC-AMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIE---------- 790

Query: 764  HILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQ 823
             ++   +L  GQNA+VAV  + GY+ ED+LV+N+ S++RG  R +  R Y   + +    
Sbjct: 791  -LVKYDQLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTNLKSYSNG 849

Query: 824  VKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADS-------GAD 876
             K R +      G   + I +   L+ DG   +G  + +G++ I K           G+D
Sbjct: 850  TKDRLNPPTYENG---APIRKHALLEADGLAAVGEQVNAGEVYINKSTPEQSNLSGIGSD 906

Query: 877  HSIKLKHTERGM---------VQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQK 927
                +++T   M         + KV+ S  ++      V +RQ R P +GDKFSS HGQK
Sbjct: 907  AGRPVQYTPTPMTYKLHDPAYIDKVMYSVQENENQLVKVLVRQTRRPEVGDKFSSRHGQK 966

Query: 928  GVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLK 987
            GV+G +  Q + PFT  GI PDI++NPH FPSR T G++LE   GK       G+ +G  
Sbjct: 967  GVVGIIADQVDMPFTDSGINPDIIMNPHGFPSRMTVGKMLELVAGKA------GVLAGHH 1020

Query: 988  RYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSED 1047
             Y T F    V+  +  L   GFS  G + L  G TGE +   +F GP +YQ+L HM +D
Sbjct: 1021 GYGTCFGGTPVEEASRVLIDHGFSYGGKDYLTSGITGEALPFYVFTGPIYYQKLKHMVQD 1080

Query: 1048 KVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMH 1107
            K+  R  GP   LTRQP   R R GG++ GEMERDCLIA+G +  L ERL   SD +++ 
Sbjct: 1081 KMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEID 1140

Query: 1108 ICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT-- 1165
            +C +C  +  +              +C+ C S   +VK  +PY AKLL QEL SM +T  
Sbjct: 1141 VCEQCGFMGYL-------------NWCQRCKSSRSVVKMTIPYAAKLLIQELMSMNVTAR 1187

Query: 1166 LKFDTEF 1172
            LK D EF
Sbjct: 1188 LKLDDEF 1194


>gi|425771289|gb|EKV09736.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
 gi|425776820|gb|EKV15021.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
          Length = 1208

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 366/1232 (29%), Positives = 573/1232 (46%), Gaps = 168/1232 (13%)

Query: 5    DNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGE 64
            + G TDP +        L  F +          GLV   ++SYN F++  ++K  +S   
Sbjct: 75   NKGLTDPINTARDKWNLLPAFLKVK--------GLVKQHLDSYNYFVEVQMKKIVES-SS 125

Query: 65   TIVEPGYDPSKKGEGEWRYASMRFGQVTLDKP--SFFAGNGGD--EHDMFPRHARLQNMT 120
            TI         + + +  +  ++F  + +  P  +   G+GG   E  + P+  RL++ T
Sbjct: 126  TI---------RSDVDHNFY-IKFTDIYVASPRRADEQGDGGIDFESTITPQECRLRDTT 175

Query: 121  YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
            Y++ + V  ++               GR++ I++ V         IGRIP+M++S  C +
Sbjct: 176  YAAPILVDFEY-------------VRGRQRVIRRAVP--------IGRIPIMLRSSKCVL 214

Query: 181  KGVEKG------DCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNS------MGWTVAY 228
                        +C  D GGYF++ G EKV + QEQ+   R+ V              + 
Sbjct: 215  SNKTPAQMSVLNECPLDPGGYFVVNGTEKVILVQEQLSKNRIIVETDPKKEIVQASVTSS 274

Query: 229  KSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLID 288
             +E K    IV           K G   +    L+ +IPI IL  A+G+ +DKE++ ++ 
Sbjct: 275  SNERKSKSYIVS----------KKGRLYVKHNVLNEDIPIVILLKAMGIHTDKEMMQMV- 323

Query: 289  FTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPG----------ES 338
                D S+    FA   +     D + + + AL+++   IK                 E+
Sbjct: 324  --TGDDSLYQDDFAINFEEAINVDVYTQ-QQALEWIGCRIKINRKQAAYRKTHVQEAVEA 380

Query: 339  TEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLER 398
                + +++       + KA ++ +M + +L A S     D+RD   NKRLELAG++L  
Sbjct: 381  IASVIISHIEVKDMNFRPKAIYVAHMARRVLMAKSDPALVDDRDYLGNKRLELAGQMLAL 440

Query: 399  -----------ELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFST 447
                       ++K++I     +  +A Q D +   T       +  + +T G++RA ST
Sbjct: 441  LFEDLFKKFCFDIKMNIDKVLNKRNRAEQFDAWTIVT-------MHGNHITQGMNRAIST 493

Query: 448  GAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKIC 507
            G WS    R ER +G+   L R + +  L  + R   Q + T KV   R   PS +G +C
Sbjct: 494  GNWSLKRFRMER-AGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLC 552

Query: 508  FLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKLADDASYSL--GGKFKVF 564
               TP+GE CGLVKNL +   ++T+  E P+   +F  G+E ++      L   G + + 
Sbjct: 553  PADTPEGEACGLVKNLALMTHITTNDEEGPVRNLIFMLGVEDISSVGGQQLYARGAYTIS 612

Query: 565  VDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE 624
            ++G   G+ +   SF++  RR RR   +   V I  +  Q  V +  D GRI RPL+VVE
Sbjct: 613  INGTPTGLTRRPKSFLNAFRRLRRMGRVSEFVSIYINHHQRAVHVATDDGRICRPLIVVE 672

Query: 625  N------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPI 678
            N      +  ++ L      F   L  G++E +   EE D      I    KDI +    
Sbjct: 673  NGKSLVGVQHLEKLRDGKMEFDDFLAQGLVEYLDVNEENDSY----IAIYEKDISNT--- 725

Query: 679  KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQ 738
              TH E++   +LG   G+IP+ +H+ + R  YQ      QAIG   +N   R+D++ + 
Sbjct: 726  -HTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQC-AMGKQAIGAIASNQFQRIDSILYL 783

Query: 739  LFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRA 798
            + YPQ+P+ ++   +           +    +L  GQNA VAV  + GY+ ED+LV+N+ 
Sbjct: 784  MVYPQKPMVKSRTIE-----------LTKYDQLPAGQNATVAVMSYSGYDIEDALVLNKG 832

Query: 799  SLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGA 858
            S++RG  R +  R Y   + +     K          G     I +   L+ DG   +G 
Sbjct: 833  SVDRGFGRCQVFRKYVTTLKSYPNGAKDSLKGPTFENG---VPIRKHALLESDGLAAVGE 889

Query: 859  NLQSGDIVIGKYADSGADH----------------SIKLKHTERGMVQKVVLSSNDDGKN 902
             + +G+  I K      +                 S+  K  +   + KV++S+ +    
Sbjct: 890  MVNNGESYINKVTPRVQNSMGFTGSGMGGGDVIEASMNYKLPDPSYIDKVLVSATEGETQ 949

Query: 903  FSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQT 962
               V  RQ R P +GDKFSS HGQKGV+G +  Q + PF+ QGI PDI++NPH FPSR T
Sbjct: 950  LIKVLTRQTRRPEVGDKFSSRHGQKGVVGIIADQADMPFSDQGINPDIIMNPHGFPSRMT 1009

Query: 963  PGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGR 1022
             G++LE   GK       G+ SG   Y T F    V+ +++ L   GFS  G + L  G 
Sbjct: 1010 VGKMLELVAGKA------GVLSGQHGYGTCFGGSPVEEMSQILIDKGFSYGGKDYLTSGI 1063

Query: 1023 TGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1082
            TGE +   +F GP +YQ+L HM +DK+  R  GP   LTRQP   R R GG++ GEMERD
Sbjct: 1064 TGEALPFYVFTGPIYYQKLKHMVQDKMHSRAKGPTATLTRQPTEGRSRNGGLRLGEMERD 1123

Query: 1083 CLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDD 1142
            CLIA+G +  L ERL   SD +++ +C +C  +  +              +C  C S   
Sbjct: 1124 CLIAYGTSQLLLERLMISSDRHEVDVCEQCGFMGYL-------------NWCPGCKSSRS 1170

Query: 1143 IVKANVPYGAKLLCQELFSMGIT--LKFDTEF 1172
            +VK  +PY AKLL QEL SM +T  LK D EF
Sbjct: 1171 VVKMVIPYAAKLLIQELMSMNVTARLKLDDEF 1202


>gi|55584694|gb|AAV53578.1| RNA polymerase II second largest subunit [Boletellus projectellus]
          Length = 899

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 305/873 (34%), Positives = 459/873 (52%), Gaps = 99/873 (11%)

Query: 258  SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG 317
            ++ ++  +IPIW++F ALGV SD++I+  I +  +D  +L +L   I D     D     
Sbjct: 60   TIPYIRVDIPIWVVFRALGVISDRDILEHICYDMQDSQMLEVLKPCIDDGFVIQDR---- 115

Query: 318  RNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLH----GTKQKARFLGYMVK 366
              AL ++    +GTT   G S E       E +   + P +        +KA F GYM+ 
Sbjct: 116  EVALDFIGN--RGTT--TGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIH 171

Query: 367  CLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR 426
             LL A   RR+ D+RD F  KRL+LAG LL    ++      K + + LQ+ +   +   
Sbjct: 172  RLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFKKLTKDVYRYLQKCVETHKEFN 231

Query: 427  PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
             +   +    +TNGL  + +TG W    K     +G+   L R     TL  LRR    +
Sbjct: 232  -LSLAVKHQTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPL 290

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSG 545
               GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  S   P+ E L   G
Sbjct: 291  GREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWG 350

Query: 546  MEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQS 605
            +E L ++A +S     KVFV+G W+GV +D  + V  +++ RR+ ++  +V + RD  + 
Sbjct: 351  LESLEENA-HSSTPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRER 409

Query: 606  EVRIFMDAGRILRPLLVVENM------GKIKSL-------EGKNYTFQALLDHGIIELVG 652
            E+R++ DAGR+ RPL +VEN         IK L       +G+ + ++ L+  GIIEL+ 
Sbjct: 410  ELRLYTDAGRVCRPLFIVENQQLALQKKHIKWLNQGYRDDDGEEFKWEQLVKSGIIELLD 469

Query: 653  TEEEEDCCTAWGIKYLLKDIE----------------DKKPIK----------FTHCELD 686
             EEEE       I    +D+E                D  P            +THCE+ 
Sbjct: 470  AEEEETVM----ISMTPEDLENSRLQSAGINPQDHDADHDPAARLKAGITAHTWTHCEIH 525

Query: 687  MSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPL 746
             S +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DT+++ L+YPQ+PL
Sbjct: 526  PSMILGVCASIIPFPDHNQSPRNTYQSAM-GKQAMGIYLTNFLVRMDTMANILYYPQKPL 584

Query: 747  FRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFR 806
              T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FR
Sbjct: 585  ATTRSME-----------YLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 633

Query: 807  SEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIV 866
            S + RSY  +++ K    +    +       ++ K G  D ++DDG    G N++  DI+
Sbjct: 634  SIYYRSY-MDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKIEDDGLIAPGTNVRGEDII 692

Query: 867  IGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQV 911
            IGK A                +  D S  LK TE G+V +V++++N +G+ F  V +R  
Sbjct: 693  IGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRST 752

Query: 912  RSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAAL 971
            R P +GDKF+S HGQKG +G    QE+ PFT +GIVPD++INPHA PSR T G L+E  L
Sbjct: 753  RIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDLIINPHAIPSRMTIGHLVECLL 812

Query: 972  GKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLI 1031
             K    +G       +  ATPF   +V++++  L + G+   G E +Y G TG+ +++ I
Sbjct: 813  SKVATLIGN------EGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTGKKLQAQI 866

Query: 1032 FIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQP 1064
            ++GPT+YQRL HM +DK+  R  GPV  LTRQP
Sbjct: 867  YLGPTYYQRLKHMVDDKIHSRARGPVQILTRQP 899


>gi|55583706|gb|AAV53372.1| RNA polymerase II second largest subunit [Suillus pictus]
          Length = 899

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 314/879 (35%), Positives = 467/879 (53%), Gaps = 111/879 (12%)

Query: 258  SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG 317
            ++ ++  +IPIW++F ALGV SD++I+  I +  +D  +L +L   I D     D     
Sbjct: 60   TIPYIRVDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDR---- 115

Query: 318  RNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLHGTK----QKARFLGYMVK 366
              AL ++    +GTT   G S E       E +   + P +  ++    +KA F GYM+ 
Sbjct: 116  EVALDFIGN--RGTT--TGLSRERRIRYAQEILQKEMLPHVSMSEGSESKKAYFFGYMIH 171

Query: 367  CLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR 426
             LL A   RR+ D+RD F  KRL+LAG LL        A   + + K L RD+Y  R ++
Sbjct: 172  RLLLAALERRELDDRDHFGKKRLDLAGPLL--------AGLFRMLFKKLTRDVY--RYLQ 221

Query: 427  PI-----EYYLDASI----LTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLV 477
                   E+ L  ++    +TNGL  + +TG W    K     +G+   L R     TL 
Sbjct: 222  KCVETHKEFNLSLAVKHQTITNGLKYSLATGNWGDQKKAMSSKAGVSQVLNRYTYASTLS 281

Query: 478  DLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEP 536
             LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  S   P
Sbjct: 282  HLRRTNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSAP 341

Query: 537  IFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQV 596
            + E L   G+E L ++A +S     KVFV+G W+GV +D  + V  +++ RR+ ++  +V
Sbjct: 342  VIEFLEEWGLESLEENA-HSSTPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEV 400

Query: 597  EIKRDELQSEVRIFMDAGRILRPLLVVENM------GKIKSL-------EGKNYTFQALL 643
             + RD  + E+R++ DAGR+ RPL +VEN         IK L       +G+ + ++ L+
Sbjct: 401  SVVRDIRERELRLYTDAGRVCRPLFIVENQQLALQKKHIKWLNQGYREDDGEEFKWEQLV 460

Query: 644  DHGIIELVGTEEEED---CCT----------AWGIKYLLKDIEDKKPIK----------F 680
             +GIIEL+  EEEE    C T          + GI     D  D  P            +
Sbjct: 461  KNGIIELLDAEEEETVMICMTPEDLENSRLQSAGIDPHQND-GDYDPAARLKAGINSHTW 519

Query: 681  THCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLF 740
            THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DT+++ L+
Sbjct: 520  THCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAM-GKQAMGIYLTNFLVRMDTMANILY 578

Query: 741  YPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASL 800
            YPQ+PL  T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++S+
Sbjct: 579  YPQKPLATTRSME-----------YLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSI 627

Query: 801  ERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANL 860
            +RG+FRS + RSY  +++ K    +    +       ++ K G  D ++DDG    G  +
Sbjct: 628  DRGLFRSIYYRSY-MDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKIEDDGLIAPGTGV 686

Query: 861  QSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSV 905
               DI+IGK A                +  D S  LK TE G+V +V++++N +G+ F  
Sbjct: 687  SGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVK 746

Query: 906  VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 965
            V +R  R P +GDKF+S HGQKG +G    QE+ PFT +GIVPDIVINPHA PSR T G 
Sbjct: 747  VRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIVINPHAIPSRMTIGH 806

Query: 966  LLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGE 1025
            L+E  L K    +G       +  ATPF   +V++++  L + G+   G E +Y G TG+
Sbjct: 807  LVECLLSKVATLIGN------EGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTGK 860

Query: 1026 MVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQP 1064
             +++ +++GPT+YQRL HM +DK+  R  GPV  LTRQP
Sbjct: 861  KLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQP 899


>gi|418204394|gb|AFX61751.1| RNA polymerase II second-largest subunit, partial [Ascosphaera
            variegata]
          Length = 1110

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 345/1144 (30%), Positives = 543/1144 (47%), Gaps = 180/1144 (15%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RY 83
            C     SFF   GLVS Q++SY+EFI   +Q+  D  G+  V+    P +        R 
Sbjct: 12   CWTVISSFFEAKGLVSQQLDSYDEFITTTMQELVDEQGQVTVDQTLTPDEDEMNPVVVRR 71

Query: 84   ASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDK 143
              ++FG   + +P+    +G     M P+ ARL+N+TYSS + ++   ++   + VT   
Sbjct: 72   YELKFGTCQIGRPTMTESDGTTTV-MLPQEARLRNLTYSSPIYLEFTKRITEAREVTMAP 130

Query: 144  FKT--------------GREQYIQKE-----VLSDETTNIIIGRIPVMVKSDLCWMKGVE 184
                              R  Y+Q E         +  NI IG++P+MV+S  C ++ + 
Sbjct: 131  DAEDEDDEEDERDADLKARGTYLQWEEKKLGPKEHKMENIFIGKMPIMVRSKYCLLRDLS 190

Query: 185  K------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENK 233
            +       +C FD GGYF+I G+EKV +AQE+     + +      +   +    +S  +
Sbjct: 191  EQRLYNWNECPFDSGGYFVINGSEKVLIAQERSAGNIVQIFQKAPPSPTPYIAEIRSAIE 250

Query: 234  R-----NRLIVRLVDMSKFEDIKGGEKVL----SVYFLSTEIPIWILFFALGVSSDKEIV 284
            +     ++L ++L      +   GG+       ++ ++  +IPI+I+F ALGV SD++I+
Sbjct: 251  KGSRILSQLSIKLFKARTEKSSTGGQSGAMIKSTLPYVRDDIPIFIVFRALGVVSDEDIL 310

Query: 285  NLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES---TEE 341
            N I +   D  +L +L  +I      C   ++   AL ++ K  +  +    +      +
Sbjct: 311  NHICYDPNDLPMLELLKPTIQ----TCLCIQEREVALDFIAKRGQHPSMTQDKRIRFARD 366

Query: 342  CMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLE 397
             M     P +  ++    +KA F GYMV  LLQ   GRR  D+RD F  KRL+LAG LL 
Sbjct: 367  IMQKEFLPHISQSEGSETRKAFFFGYMVHKLLQCALGRRDVDDRDHFGKKRLDLAGPLLA 426

Query: 398  RELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRT 457
               +       K + + +Q  +  +  ++ +   +    L+ GL  A +TG W    K  
Sbjct: 427  GLFRTLFMRLTKDLNRYVQICVEKNTQLQ-LNIAVKNGTLSGGLKYALATGNWGEQKKAA 485

Query: 458  ERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENC 517
               +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ C
Sbjct: 486  SSKAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQAC 545

Query: 518  GLVKNLGV-----TGLVSTSILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGV 572
            GLVKNL +      G  +T IL+ +  Q     ME L +          KVF++G W+GV
Sbjct: 546  GLVKNLSLMCTITVGTQATGILDFLIAQ----HMEVLEEYEPQVSPDVTKVFLNGVWVGV 601

Query: 573  CKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------- 625
             +D    VS+++  RR+  LP +  + RD    E +IF DAGR+ RPL VV+N       
Sbjct: 602  HRDPSHLVSKIQSLRRQNLLPYEASLVRDIRDKEFKIFTDAGRVCRPLFVVDNDPASSNC 661

Query: 626  ------MGKIKSLEG---------------KNYTFQALLDHGIIELVGTEEEEDCCTAWG 664
                     IK LE                +++ ++ L+  G+IE V  EEEE       
Sbjct: 662  GNLVLTKEHIKKLEADKDLPRNLDPEDRRARHFGWRGLVTSGVIEYVDAEEEETIM---- 717

Query: 665  IKYLLKDIEDKKPIK--------------------------FTHCELDMSFLLGLSCGII 698
            I    +++E +K +K                          +THCE+  S +LG+   II
Sbjct: 718  IVMTPEELESQKQMKRGAMPIADRSDPNRRVRPLFSQKVHMYTHCEIHPSMILGICASII 777

Query: 699  PFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKP 758
            PF +H+ + R  YQS     QA+G   TN   R++T+S+ L+YPQ+PL  T   +     
Sbjct: 778  PFPDHNQSPRNTYQS-AMGKQAMGVFLTNFDQRMETMSNILYYPQKPLATTRSME----- 831

Query: 759  GYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSY----- 813
                   L   +L  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R Y     
Sbjct: 832  ------FLKFRDLPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRCYTDSEK 885

Query: 814  --------KAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDI 865
                    + EV ++   ++ +  ++  + G              DG   IG ++  G +
Sbjct: 886  VVGVSVTERFEVPSRSDTLRAKDEEEYKHLGA-------------DGIAEIGEHVSGGAV 932

Query: 866  VIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQ 910
            +IGK A                +  D S  L+ TE G V +VV++++ D   F  V +R 
Sbjct: 933  IIGKTAPLAPESEELGQRESHHTKIDTSTCLRTTENGHVDQVVVTTSSDDTKFVKVRMRT 992

Query: 911  VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA 970
             + P +GDKF+S HGQKG +G    QE+ PFT +GI PD++INPHA PSR T   L+E  
Sbjct: 993  TKIPQIGDKFASRHGQKGTIGITYCQEDMPFTREGITPDLIINPHAIPSRMTIAHLIECQ 1052

Query: 971  LGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSL 1030
            L K +AAL      G +  ATPF   +VD+++  L  +G+   G E +Y+G TG  + + 
Sbjct: 1053 LSK-VAAL-----RGFEGDATPFTDVTVDSVSNLLRESGYQSRGFEVMYNGHTGRKLVAQ 1106

Query: 1031 IFIG 1034
            +F+G
Sbjct: 1107 VFLG 1110


>gi|358339203|dbj|GAA47313.1| DNA-directed RNA polymerase III subunit RPC2 [Clonorchis sinensis]
          Length = 1141

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 369/1200 (30%), Positives = 553/1200 (46%), Gaps = 156/1200 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            SF    GLV   I+SYN FI+  ++    +     V          E  W    + +  V
Sbjct: 17   SFLASKGLVKLHIDSYNHFIETEIKNIVRANNRVSVP---------EANW---WLEYNDV 64

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             +  P+   G G     + P   RL+++TY+  + V V F                    
Sbjct: 65   YVRSPTVNDG-GVVASRVTPHDCRLRDLTYAGEILVDVTFMR------------------ 105

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
             Q E++S     ++IGR+PVM+KS +C + G      +   +C  D GGYFII G EKV 
Sbjct: 106  -QNEIVSKR--GVLIGRMPVMLKSSVCILNGKTPSELMRLKECPLDPGGYFIIGGTEKVI 162

Query: 206  VAQEQICLKRLWVS--NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLS 263
            + QEQ+   RL V   +  G   +  S + + +    ++       +K  +  L+    +
Sbjct: 163  LMQEQMSKNRLIVEEDSKRGLVCSVTSSSAQTKSKTNII-------MKDDKFFLAHNSFT 215

Query: 264  TEIPIWILFFALGVSSDKEIVNLIDFTCEDC------SILNILFASIHDADNKCDEFRKG 317
             ++P+ ILF A+G++SD+EI++ I  T E        S+   L +S+H   + C   +  
Sbjct: 216  VDVPVAILFKAMGITSDQEILHYIG-TEESIWANFVPSLKQCLESSVHTRLDACRWLQSR 274

Query: 318  RNALKYVDKLIKG-TTFPPGESTEE------------CMNTYLFPSLHGTKQKARFLGYM 364
                ++   L  G  T P    +EE             + T++         +A FLG M
Sbjct: 275  LQQRRFRPGLTSGKPTRPDCPVSEEDVVLDMQRFIRDIIITHVEMEKFNFAPRALFLGQM 334

Query: 365  VKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLY---- 420
            V+ L+ A   +   D+RD + NKR+ELAG LL        A   + + K    D++    
Sbjct: 335  VRYLILANEHQIPPDDRDFYGNKRIELAGSLL--------ALLFEDVFKTFNEDMWLTVS 386

Query: 421  ---GDRTVRP--IEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQT 475
                 R   P  I  ++   ++T  L+RA S+G W     R  R  G+   + R + +  
Sbjct: 387  KIDTKRRCTPFDISRHIKTWMITEQLNRAISSGNWIIKRFRMMR-HGVTQIVSRLSYVAA 445

Query: 476  LVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE 535
            L  + R     + T KV   R  H S WG +C   TP+GE CGLVKN+ +   V+  + +
Sbjct: 446  LGHMTRMTSTFEKTRKVSGPRSIHASQWGFVCPSDTPEGEACGLVKNVALMCHVTVEMDD 505

Query: 536  PIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQ 595
                +L +S          Y    +F ++V+G  IG  +      + +R  RR   +   
Sbjct: 506  TELIRLLSSYYVMPLHQFLYG-RTEFIIYVNGKPIGFTEQPGKLAALIRGLRRSGRIDCF 564

Query: 596  VEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIE 649
            V +   +    V +  D GR+ RP +VV N         ++ L     ++   L  G+IE
Sbjct: 565  VSVHIKQAHRCVHVVSDGGRLCRPYIVVANNRPLVTQAMLEDLVHNVLSWDDFLKKGVIE 624

Query: 650  LVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRV 709
             +   E  DC  A    YL     D    K+TH E+D + +LG+  G+IP+ +H+ + R 
Sbjct: 625  YLDANELNDCLVAMDESYL----SDGN--KYTHMEIDPATILGVVAGLIPYPDHNQSPRN 678

Query: 710  LYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRP 769
             YQ      QAIG    N  IR DTL +Q+ YPQ+PL ++               ++   
Sbjct: 679  TYQCAM-GKQAIGTVALNQQIRFDTLQYQMVYPQKPLVQSKTI-----------QMMHFD 726

Query: 770  ELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSS 829
            EL  GQNAIVA+  + GY+ ED+L++NRASL+RG  R+   R     +   E  V  R  
Sbjct: 727  ELPAGQNAIVAIMSYSGYDVEDALIVNRASLDRGFARACVYRRAGVHLKMHENAVYDRLM 786

Query: 830  DDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGK-----YADSGADHSIKL--- 881
               V+      + G  + L  DG  F+GA      I++ K       ++  D++ +L   
Sbjct: 787  GPSVDRETGLPRRGD-ELLQADGTAFVGARASDRQILVNKEMPVVKVNAAQDNAGQLGLH 845

Query: 882  -----------------KHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMH 924
                             K  E   V+KV+ S+++  +    V LRQ R P +GDKFSS H
Sbjct: 846  GGTHESMTEFRRCPADYKGIEPSYVEKVMFSTSEGNQAVVKVLLRQTRRPEVGDKFSSRH 905

Query: 925  GQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICS 984
            GQKGV+G +  QE+ PF++ G+VPD+++NPH FPSR T G+LLE    K       G   
Sbjct: 906  GQKGVVGLIVRQEDMPFSMHGLVPDVIMNPHGFPSRMTVGKLLELLGSKA------GAIE 959

Query: 985  GLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHM 1044
            G  R  + F+  S ++++  L   G    G E LY G TG  + + I+ GP +YQRL HM
Sbjct: 960  GRIRDGSAFSGDSAESLSRVLIEHGHHYLGKEVLYSGVTGAPLEAYIYFGPVYYQRLKHM 1019

Query: 1045 SEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSY 1104
              DKV  R+ GPV  LTRQP   R R GG++ GEMERDC IA+G +  L ERL T SD Y
Sbjct: 1020 VMDKVHARSRGPVTALTRQPTEGRSREGGLRIGEMERDCFIAYGTSQLLVERLLTSSDVY 1079

Query: 1105 QMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
               +C KC  +A    RV          +C+ C S   +V   +PY  KLL QEL  M I
Sbjct: 1080 DACVCEKCGLLAT--SRV----------WCQYCRSSRQVVTVRMPYACKLLFQELMCMRI 1127


>gi|55583696|gb|AAV53367.1| RNA polymerase II second largest subunit [Phyllotopsis sp. MB35]
          Length = 889

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 304/876 (34%), Positives = 459/876 (52%), Gaps = 98/876 (11%)

Query: 258  SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG 317
            ++ ++  +IPIW++F  LGV SD++I+  I +  +D  +L +L   I D     D     
Sbjct: 46   TIPYIKVDIPIWVVFRGLGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDR---- 101

Query: 318  RNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLH----GTKQKARFLGYMVK 366
              AL ++    +GTT   G S E       E +   + P +        +KA F GYM+ 
Sbjct: 102  EVALDFIGN--RGTT--TGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIH 157

Query: 367  CLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR 426
             LL A   RR+ D+RD F  KRL+LAG LL    ++      K + + LQ+ +   +   
Sbjct: 158  RLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFN 217

Query: 427  PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
             +   +    +TNGL  + +TG W    K     +G+   L R     TL  LRR    +
Sbjct: 218  -LALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPL 276

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSG 545
               GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  S   P+ E L   G
Sbjct: 277  GREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWG 336

Query: 546  MEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQS 605
            +E L ++A  S     KVFV+G W+GV +D  + V  +++ RR+ ++  +V + RD  + 
Sbjct: 337  LESLEENAHSSTPCT-KVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREK 395

Query: 606  EVRIFMDAGRILRPLLVVENM------GKIKSL------EGKNYTFQALLDHGIIELVGT 653
            E+R++ DAGR+ RPL +VEN         +K L      EG+ + ++ L+ +GIIEL+  
Sbjct: 396  ELRLYTDAGRVCRPLFIVENQQLALQKKHVKWLNSGFNDEGEAFKWEHLVKNGIIELLDA 455

Query: 654  EEEEDCCTAWGIKYLLKDIEDKKPIK--------------------------FTHCELDM 687
            EEEE       I    +D+E+ +  +                          +THCE+  
Sbjct: 456  EEEETVM----ISMTPEDLENSRLQQSGLDPHANDGDFDPAARLKAGINAHTWTHCEIHP 511

Query: 688  SFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLF 747
            S +LG+   IIPF +H+ + R  YQS     QA+G   TN  IR+DT+++ L+YPQ+PL 
Sbjct: 512  SMILGICASIIPFPDHNQSPRNTYQSAM-GKQAMGIYLTNFLIRMDTMANILYYPQKPLA 570

Query: 748  RTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRS 807
             T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS
Sbjct: 571  TTRSME-----------YLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRS 619

Query: 808  EHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVI 867
             + RSY  +++ K    +    +  +    ++ K G  D L+DDG    G  +   DI+I
Sbjct: 620  IYYRSY-MDLEKKSGIQQLEEFEKPMRDNTLRMKHGTYDKLEDDGLIAPGTGVAGEDIII 678

Query: 868  GKYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVR 912
            GK A                +  D S  LK TE G+V +V++++N +G+ F  V +R  R
Sbjct: 679  GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTR 738

Query: 913  SPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALG 972
             P +GDKF+S HGQKG +G    QE+ PFT +GIVPDI+INPHA PSR T G L+E  L 
Sbjct: 739  VPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLS 798

Query: 973  KGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIF 1032
            K    +G       +  ATPF   +V++++  L + G+   G E ++ G TG  +++ ++
Sbjct: 799  KVATLIGN------EGDATPFTDLTVESVSTFLRQKGYQSRGLEVMFHGHTGRKLQAQVY 852

Query: 1033 IGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADR 1068
            +GPT+YQRL HM +DK+  R  GPV  LTRQPV  R
Sbjct: 853  LGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGR 888


>gi|119497281|ref|XP_001265400.1| DNA-directed rna polymerase III subunit [Neosartorya fischeri NRRL
            181]
 gi|119413562|gb|EAW23503.1| DNA-directed rna polymerase III subunit [Neosartorya fischeri NRRL
            181]
          Length = 1200

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 361/1206 (29%), Positives = 566/1206 (46%), Gaps = 161/1206 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQ- 90
            +F    GLV   I+SYN FI+  L+K  +S   + +    D +       ++  +  G  
Sbjct: 85   AFLKVKGLVKQHIDSYNYFIEVQLKKIVES--SSTIRSDIDHT----FYIKFTDIYVGSP 138

Query: 91   VTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
               D+P     +     D+ P   RL++ TY++ + V  ++               GR++
Sbjct: 139  CRADEPQDVTPDATPS-DVSPHECRLRDTTYAAPILVNFEY-------------IRGRQR 184

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGAEKV 204
              +K         + IGR+P+M++S  C +      +      C  D GGYFI+ G EKV
Sbjct: 185  VTRK--------GVSIGRMPIMLRSSKCVLANKTPSEMTVLNECPLDPGGYFIVNGTEKV 236

Query: 205  FVAQEQICLKRLWVSNS-----MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
             + QEQ+   R+ V        +  +V   S  ++++  + L         K  +  +  
Sbjct: 237  ILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSKSYIIL---------KKDKLYVKH 287

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLI---DFTCEDCSILNI-------LFASIHDADN 309
              LS +IPI IL  A+G+ +++E++ L+   D   +D   +N        ++      D 
Sbjct: 288  NVLSEDIPIVILLRAMGIHTEQEMLLLVAGVDSLYQDDFAINFEESIKLGIYTQQQALDW 347

Query: 310  KCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLL 369
                 +  R    Y    I+       E+    + +++       + KA ++ +M + +L
Sbjct: 348  IGARIKINRKQSSYRRTHIQEAV----EAIASVIISHIEVKNMNFRPKAVYVAHMARRVL 403

Query: 370  QAYSGRRKCDNRDDFRNKRLELAGELLER-----------ELKVHIAHARKRMAKALQRD 418
             A +     D+RD   NKRLELAG+LL             ++K++I     +  +A Q D
Sbjct: 404  MAKNDPSLVDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDIKMNIDKVLNKRNRAEQFD 463

Query: 419  LYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVD 478
             +   +       + ++ +T G++RA STG WS    R ER +G+   L R + +  L  
Sbjct: 464  AWTVMS-------MHSNHITQGMNRAISTGNWSLKRFRMER-AGVTHVLSRLSYIAALGM 515

Query: 479  LRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PI 537
            + R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL +   ++T+  E PI
Sbjct: 516  MTRISSQFEKTRKVSGPRALQPSQFGMLCPADTPEGEACGLVKNLALMTHITTNDEEGPI 575

Query: 538  FEQLFNSGMEKLADDASYSLGGK-------FKVFVDGDWIGVCKDSLSFVSELRRKRRRK 590
               +F  G E +      +LGGK       + + ++G  I + +    F++  RR RR  
Sbjct: 576  KNLVFMLGAEDIM-----ALGGKQLYTPGSYTISINGTPIALTRRPKYFLNAFRRLRRMG 630

Query: 591  ELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLD 644
             +   V I  +  Q  V I  D GRI RPL+VVEN         +  L      F   L 
Sbjct: 631  RISEFVSIYINHHQCAVHIATDDGRICRPLIVVENGRSLVTARHLDKLRDGTMQFDDFLA 690

Query: 645  HGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHD 704
             G++E +   EE D   A       KDI D      TH E++   +LG   G+IP+ +H+
Sbjct: 691  QGLVEYLDVNEENDSLIAL----YEKDITDTT----THLEIEPFTVLGAVAGLIPYPHHN 742

Query: 705  HARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNH 764
             + R  YQ      QAIG   +N  +R+D++ + + YPQ+P+ ++   +           
Sbjct: 743  QSPRNTYQC-AMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIE----------- 790

Query: 765  ILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQV 824
            ++   +L  GQNA+VAV  + GY+ ED+LV+N+ S++RG  R +  R Y   + +     
Sbjct: 791  LVKYDQLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTNLKSYSNGT 850

Query: 825  KRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADS-------GADH 877
            K R +      G   + I +   L+ DG   +G  + +G++ I K           G+D 
Sbjct: 851  KDRLNPPTYENG---APIRKHALLEADGLAAVGEQVNAGEVYINKSTPEQSNLSGIGSDA 907

Query: 878  SIKLKHTERGM---------VQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKG 928
               +++T   M         + KV+ S  ++      V +RQ R P +GDKFSS HGQKG
Sbjct: 908  GRPVQYTPTPMTYKLHDPAYIDKVMYSVQENENQLVKVLVRQTRRPEVGDKFSSRHGQKG 967

Query: 929  VLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKR 988
            V+G +  Q + PFT  GI PDI++NPH FPSR T G++LE   GK       G+ +G   
Sbjct: 968  VVGIIADQADMPFTDAGINPDIIMNPHGFPSRMTVGKMLELVAGKA------GVLAGHHG 1021

Query: 989  YATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDK 1048
            Y T F    V+  +  L   GFS  G + L  G TGE +   +F GP +YQ+L HM +DK
Sbjct: 1022 YGTCFGGTPVEEASRILIDHGFSYGGKDYLTSGITGEALPFYVFTGPIYYQKLKHMVQDK 1081

Query: 1049 VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHI 1108
            +  R  GP   LTRQP   R R GG++ GEMERDCLIA+G +  L ERL   SD +++ +
Sbjct: 1082 MHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEIDV 1141

Query: 1109 CRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT--L 1166
            C +C  +  +              +C+ C S   +VK  +PY AKLL QEL SM +T  L
Sbjct: 1142 CEQCGFMGYL-------------NWCQRCKSSRSVVKMTIPYAAKLLIQELMSMNVTARL 1188

Query: 1167 KFDTEF 1172
            K D EF
Sbjct: 1189 KLDDEF 1194


>gi|45545333|gb|AAS67514.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Melanomma radicans]
          Length = 936

 Score =  474 bits (1221), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 320/966 (33%), Positives = 477/966 (49%), Gaps = 120/966 (12%)

Query: 201  AEKVFVAQEQICLKRLWV----SNSMGWTVAYKSE-NKRNRLI----VRLVDMSKFEDIK 251
            +EKV +AQE+     + V       + WT   +S   K  RLI    ++  D S      
Sbjct: 1    SEKVLIAQERSAANIVQVFRKKQGPIPWTAEIRSAVEKGTRLISSFNIKWTDNSLILKRT 60

Query: 252  GGEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNK 310
             G    ++  ++  ++P+ I+F ALG+ SD++I+N I +  ED  +L +L  SI +    
Sbjct: 61   PGPFAYALLPYIKADVPMAIVFRALGIVSDEDILNHIVYDREDTQMLELLKPSIEEGSMI 120

Query: 311  CDEFRKGRNALKYVDKLIKGTTFPPGES----TEECMNTYLFPSLH----GTKQKARFLG 362
             D      NAL ++ +  +G T    E      +E M     P +        +KA F G
Sbjct: 121  QDR----ENALDWIAR--RGNTTGTKERRLKFAKEIMQREFLPHISQREGADTRKAFFFG 174

Query: 363  YMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGD 422
            YM+  LLQ   GRR+ D+RD F  KRL+LAG L+    ++      K + K LQ+ +  +
Sbjct: 175  YMIHRLLQCVLGRREEDDRDHFGKKRLDLAGPLIANLFRILFLKLTKDVFKYLQKCVENN 234

Query: 423  RTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
            +    ++  +  S+LTNGL  + +TG W    K     +G+   L R     TL  LRRT
Sbjct: 235  QEFN-VQMAVKGSVLTNGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRT 293

Query: 483  RQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQL 541
               V   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   VS      PI + +
Sbjct: 294  NTPVGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTESTPITDYM 353

Query: 542  FNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
                ME L +          KVFV+G W+G   +    V+ ++  RR   L  ++ + RD
Sbjct: 354  SQRQMELLEEYDPVVNPSAIKVFVNGVWVGTHNNPTQLVNNVQELRRNGTLSYEMSLIRD 413

Query: 602  ELQSEVRIFMDAGRILRPLLVVENM-------------GKIKSL---------------- 632
                E +IF DAGR++RPL VVEN              G ++ L                
Sbjct: 414  IRDREFKIFTDAGRVMRPLFVVENRLNQANVGQLVLNKGHVQKLLDDREIDTSGMSDEDA 473

Query: 633  EGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIK------------- 679
                + ++ LL  G+IE +  EEEE       I    +D+E+ + ++             
Sbjct: 474  ASVKFGWRGLLHSGVIEYLDAEEEETAM----IVMTPEDLEEHRELQLGVTAPAVPDEDR 529

Query: 680  --------------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPT 725
                          +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   
Sbjct: 530  HRRIKPKPNPSVRFYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS-AMGKQAMGVAL 588

Query: 726  TNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHL 785
            TN ++R++T+ + L+YPQ+PL  T   + L              EL  GQNAIVA+  + 
Sbjct: 589  TNYALRMETMMNVLYYPQKPLATTRSMEYLK-----------FRELPAGQNAIVAIACYS 637

Query: 786  GYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRV 845
            GYNQEDS++MN++S++RG+FRS   R+Y  +     + V  R  +       ++ K G  
Sbjct: 638  GYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQEKRIGVNVLERF-EKPTRADTLRLKGGTY 696

Query: 846  DSLDDDGFPFIGANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQ 890
            D LDDDG    G  +   DI+IGK A                +  D S  L+ TE G+V 
Sbjct: 697  DKLDDDGVVAPGVRVSGDDIIIGKTAPIPTDAKELGQKTTMHTKRDVSTPLRSTENGIVD 756

Query: 891  KVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDI 950
            +V+ ++N +G  F  V  R  + P +GDKF+S HGQKG +G    QE+ PFT +G+ PD+
Sbjct: 757  QVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGLTPDL 816

Query: 951  VINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGF 1010
            +INPHA PSR T   L+E  L K       G   G +  ATPF   +VD ++  L + G+
Sbjct: 817  IINPHAIPSRMTIAHLVECLLSK------VGSLKGNEGDATPFTDVTVDGVSNLLAQHGY 870

Query: 1011 SKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKR 1070
             + G E +Y+G TG+ +R+ +F+GPT+YQRL HM +DK+  R  GP+  LTRQPV  R R
Sbjct: 871  QQRGFEVMYNGHTGKKLRAQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPVEGRAR 930

Query: 1071 FGGIKF 1076
             GG++F
Sbjct: 931  DGGLRF 936


>gi|348506052|ref|XP_003440574.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Oreochromis
            niloticus]
          Length = 1040

 Score =  474 bits (1221), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 349/1100 (31%), Positives = 528/1100 (48%), Gaps = 129/1100 (11%)

Query: 114  ARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMV 173
             RL++MTYS+ + V +++   +Q+ + +                      + IGR+P+M+
Sbjct: 10   CRLRDMTYSAPITVDIEYTRGSQRIIRN---------------------ALPIGRMPIML 48

Query: 174  KSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSN----SMG 223
            +S  C + G       +  +C  D GGYFI+KG EKV + QEQ+   R+ V      ++G
Sbjct: 49   RSSNCVLTGKTPMEFSKLNECPLDPGGYFIVKGQEKVILIQEQLSKNRIIVEQDRKGAVG 108

Query: 224  WTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEI 283
             +V   +  K++R  +          +K G   L    LS + PI I+F  +GV SD+EI
Sbjct: 109  ASVTSSTHEKKSRTNI---------IVKQGRFYLRHNTLSEDAPIAIIFKGMGVESDQEI 159

Query: 284  VNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTF---PPGESTE 340
            V +I     + S++     S+ +   K   F + + AL+Y+   ++       P     E
Sbjct: 160  VQMIG---TEESVMASFAPSLEEC-QKAQIFTQTQ-ALRYLGNKVRRQRMWGGPKKTKME 214

Query: 341  ECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRR--------KCDNRDDFRNKRLELA 392
            E     L  SL  T    +   +  KC+  A   RR        K D+RD + NKRLELA
Sbjct: 215  EARE--LLASLILTHVPVKEFNFRAKCIYLAVMVRRVILAQGDNKVDDRDYYGNKRLELA 272

Query: 393  GELLERELKVHIAHARKRMAKALQRDLYGDRTVR-PIEYYLDASILTNGLSRAFSTGAWS 451
            G+LL    +         + K   + +   R  +  +  ++    +TNG+  A STG WS
Sbjct: 273  GQLLSLLFEDLFKKFNAELKKIADQIIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWS 332

Query: 452  HPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLST 511
                + +R  G+   L R + +  L  + R   Q + T KV   R   PS WG +C   T
Sbjct: 333  LKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDT 391

Query: 512  PDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKL----ADDASYSLGGKFKVFVD 566
            P+GE CGLVKNL +   ++T + + PI +  FN G+E +     ++ SY     F VF++
Sbjct: 392  PEGEACGLVKNLALMTHITTDMEDGPIIKLAFNLGVEDVNLLCGEELSYP--SVFLVFLN 449

Query: 567  GDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN- 625
            G+ +GV +D    ++  R  RR   +   V I  +     V I  D GR+ RP ++V+  
Sbjct: 450  GNILGVIRDHQKLINTFRLMRRAGFINEFVSISTNLSDRCVYISSDGGRLCRPYIIVKKG 509

Query: 626  --MGKIKSLE--GKNY-TFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKF 680
              M K K +E   + Y TF+  L  G++E +   EE DC  A     + KD         
Sbjct: 510  VPMVKNKHIEDLSQGYRTFEDFLHEGLVEYLDVNEENDCQIALYEYMINKDT-------- 561

Query: 681  THCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLF 740
            TH E++   LLG+  G+IP+ +H+ + R  YQ      QA+G    N   R+DTL + L 
Sbjct: 562  THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-AMGKQAMGTIGYNQRNRIDTLMYLLA 620

Query: 741  YPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASL 800
            YPQRP+ +T   +           ++   +L  GQNA VAV  + GY+ ED+LV+N+ASL
Sbjct: 621  YPQRPMVKTKTIE-----------LIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASL 669

Query: 801  ERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANL 860
            +RG  R    ++ K  +     Q   +    M++    +  I R   LD DG    G  +
Sbjct: 670  DRGFGRCLVYKNAKCTLRRYTNQTFDKVMGPMLD-AATRKPIWRHSILDADGICSPGERV 728

Query: 861  QSGDIVIGKYADSGA----------------DHSIKLKHTERGMVQKVVLSSNDDGKNFS 904
            ++  +++ K   +                  D  I  K +    ++KV++SSN +     
Sbjct: 729  ENKQVLVNKSMPTVTQTPLEGSTQPGQPQYRDVPISYKGSTDSYIEKVMISSNAEDAFLI 788

Query: 905  VVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPG 964
             + LRQ R P +GDKFSS HGQKGV G +  QE+ PF   GI PDI++NPH +PSR T G
Sbjct: 789  KILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDTGICPDIIMNPHGYPSRMTVG 848

Query: 965  QLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTG 1024
            +L+E   GK       G+  G   Y T F    V  + E L R G++  G + +  G TG
Sbjct: 849  KLIELLAGKA------GVLDGRFHYGTAFGGSKVKDVCEDLIRYGYNYQGKDYVTSGITG 902

Query: 1025 EMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL 1084
            E + + I+ GP +YQ+L HM  DK+  R  GP   LTRQP   R R GG++ GEMERDCL
Sbjct: 903  EPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCL 962

Query: 1085 IAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIV 1144
            I +GA+  L ERL   SD++++ +C +C             G      +C  C S   + 
Sbjct: 963  IGYGASMLLLERLMISSDAFEVDVCGQC-------------GLLGYSGWCHYCKSSCHVS 1009

Query: 1145 KANVPYGAKLLCQELFSMGI 1164
               +PY  KLL QEL SM I
Sbjct: 1010 SLRIPYACKLLFQELQSMNI 1029


>gi|307178142|gb|EFN66950.1| DNA-directed RNA polymerase III subunit RPC2 [Camponotus floridanus]
          Length = 1120

 Score =  474 bits (1221), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 368/1204 (30%), Positives = 560/1204 (46%), Gaps = 172/1204 (14%)

Query: 28   KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMR 87
            K   +F  + GLV   I+SYN FI   ++    +  + +       S+      +Y ++R
Sbjct: 11   KLVEAFLKDKGLVKQHIDSYNYFINKEIKNIVKANEKVL------SSEDAHFYIKYLNIR 64

Query: 88   FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
             G   +D  S    +        P   RL+++ YS+ + V ++  +   +R+        
Sbjct: 65   VGLPDIDDGSNVMKSTT------PHECRLRDLNYSAPIIVDIE-HIRNNQRI-------- 109

Query: 148  REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGA 201
                          TN++IGR+PVM++S  C +         +  +C  D GGYF+I G 
Sbjct: 110  ------------RNTNMVIGRMPVMLRSSNCVLTNKSHYELAKLNECPHDPGGYFVINGQ 157

Query: 202  EKVFVAQEQICLKRLWVSNSMGWTVA----YKSENKRNRLIVRLVDMSKFEDIKGGEKVL 257
            EKV + QEQ+   R+ V       +A    +  E K    IV           K G+  +
Sbjct: 158  EKVILIQEQMVRNRIIVEEDGKEIIASCNSFTHEKKTKTSIVG----------KAGKYYI 207

Query: 258  SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFR-- 315
                   +I I ++F A+G+ SD +I+ +I    E    L+   A I +    C E    
Sbjct: 208  RNNMFQDDILITVVFKAMGIVSDIDIIQMIG---EKEKYLDKFIACIEN----CQELGIF 260

Query: 316  KGRNALKYVDKLIKGT----TFPPGESTEECMNTYLFPSL--------HGTKQKARFLGY 363
              + ALKY++   + T    ++    S  + M   L  ++           + KA  L  
Sbjct: 261  SEKQALKYLNNKRRQTRSAQSYAAKFSVIDEMKDLLAANVLSHVPVIDFNFRTKALHLAL 320

Query: 364  MVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLER-----------ELKVHIAHARKRMA 412
            M++ ++ A S R   DN+D + NKRLELAG LL             ELK+ IA       
Sbjct: 321  MIRRVIDAQSDRNLIDNKDYYGNKRLELAGSLLALMFEDLFKRFNWELKM-IADKNIPKV 379

Query: 413  KALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANP 472
            KA   D         I  Y+    +TNGL+ A S+G W+    R ER  G+   L R + 
Sbjct: 380  KAAPFD---------ITKYIRKDTITNGLAFAISSGNWTIKRFRMER-HGVTQVLSRLSY 429

Query: 473  LQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTS 532
            +  L  + R   Q + T K+   R  H S WG +C   TP+GE CGLVKNL +   ++T 
Sbjct: 430  ISALGMMTRVHSQFEKTRKISGPRALHGSQWGMLCPNDTPEGEACGLVKNLALMAHITTE 489

Query: 533  ILE-PIFEQLFNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSL--SFVSELRRKR 587
            + E P  + + N G++ +       L  K  + VFV+G+  G+ K+SL    V + R  R
Sbjct: 490  MPEGPFIKLMRNLGVQIIYTCVGGELIKKDIYVVFVNGNMAGIIKESLVLQLVHQFRLLR 549

Query: 588  RRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQ 640
            R   +   V I        V++  D GR+ RPL++V++ GK       +  LE   +TF 
Sbjct: 550  RMGYIDCFVSISVQRRHKCVQVSCDGGRLCRPLIIVKD-GKPLIEEKHMNYLEMNLWTFN 608

Query: 641  ALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPF 700
              +  G+IE +   EE D   A          E +   + TH E+    +LG+  G+IP+
Sbjct: 609  DFVHAGLIEYLDVNEENDSLIACK--------ESEIIAQTTHLEIAEFTILGVCAGLIPY 660

Query: 701  ANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGY 760
             NH+ + R  YQ      QAIG    N   R+DTL + L YPQRP+ +T           
Sbjct: 661  PNHNQSPRNTYQCAM-GKQAIGAIGYNQRNRIDTLMYNLVYPQRPIVKTR---------- 709

Query: 761  GHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDN- 819
                ++   +L  G+NA+VAV    GY+ ED+L++N+AS++RG  R    R+ K  + N 
Sbjct: 710  -QIELINFDKLPAGENALVAVMSFSGYDIEDALILNKASIDRGYGRCLVYRNSKCIIKNH 768

Query: 820  --KEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH 877
              + M V    S D +     +  I + D L++DG    G  +++  +++ K   + + +
Sbjct: 769  PNQVMDVILGQSLDAIT----KKPIPKHDILENDGIAAAGVMVENKKVMVNKAVSTRSGN 824

Query: 878  -----------------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKF 920
                              +  K +    ++KV++SSN +      + LRQ R P +GDKF
Sbjct: 825  LGPSRSDNFQSQDYRSAEVSYKGSVPAYIEKVMVSSNAENAFLIKLLLRQTRRPEIGDKF 884

Query: 921  SSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGK 980
            SS HGQKGV+G +  QE+ PF   GI PD+++NPH FPSR T G+L+E   GK       
Sbjct: 885  SSRHGQKGVVGLIVDQEDLPFNDYGICPDVIMNPHGFPSRMTVGKLIEVLAGKA------ 938

Query: 981  GICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQR 1040
            GI +G    AT F    V+ + E+L + G++  G +  Y G  G+ +   +F GP +YQ+
Sbjct: 939  GIVNGKFHDATAFEGAKVEDLCEELAQHGYNYLGKDLFYSGMNGQPITGYLFFGPVYYQK 998

Query: 1041 LIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTL 1100
            L HM +DK+  R  GP   LTRQP   R + GG++ GEMERDCLI +GA+  L ERL   
Sbjct: 999  LKHMVQDKIHVRAKGPKVILTRQPTEGRSKDGGLRLGEMERDCLIGYGASMLLIERLMLS 1058

Query: 1101 SDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELF 1160
            SDS+Q+ IC KC             G      +C+ C S   I    +PY  KLL QEL 
Sbjct: 1059 SDSFQVDICNKC-------------GLMGYNGWCQRCSSSSSISTITMPYACKLLFQELQ 1105

Query: 1161 SMGI 1164
             M I
Sbjct: 1106 CMNI 1109


>gi|440907714|gb|ELR57824.1| DNA-directed RNA polymerase III subunit RPC2 [Bos grunniens mutus]
          Length = 1133

 Score =  474 bits (1221), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 365/1185 (30%), Positives = 551/1185 (46%), Gaps = 146/1185 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYASMRFG 89
            +F    GLV   I+S+N FI   ++K        I++     +   +  W  +Y ++  G
Sbjct: 32   AFLKVKGLVKQHIDSFNYFINVEIKK--------IMKANEKVTSDADPMWYLKYLNIYVG 83

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
               +++ SF          + P   RL++MTYS+ + V +++              T   
Sbjct: 84   LPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEY--------------TRGS 123

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
            Q I +  L        IGR+P+M++S  C + G       +  +C  D GGYFI+KG EK
Sbjct: 124  QRIIRNALP-------IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEK 176

Query: 204  VFVAQEQICLKRLWVS----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            V + QEQ+   R+ V      ++G +V   +  K++R      +M+    +K G   L  
Sbjct: 177  VILIQEQLSKNRIIVEADRKGTVGASVTSSTHEKKSR-----TNMA----VKQGRFYLRH 227

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
              LS +IPI I+F A+GV SD+EIV +I     +  ++     S+ +   K   F +   
Sbjct: 228  NTLSEDIPIVIIFKAMGVESDQEIVQMIG---TEEHVMAAFGPSLEEC-QKAQIFTQ-MQ 282

Query: 320  ALKYVDKLIKGTTF----PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGR 375
            ALKY+   ++        P     EE     L  S   T    +   +  KC+  A   R
Sbjct: 283  ALKYIGNKVRRQRMWGGGPKKTKIEEARE--LLASTILTHVPVKEFNFRAKCIYTAVMVR 340

Query: 376  R--------KCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR- 426
            R        K D+RD + NKRLELAG+LL    +         M K   + +   R  + 
Sbjct: 341  RVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQF 400

Query: 427  PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
             +  ++    +TNG+  A STG WS    + +R  G+   L R + +  L  + R   Q 
Sbjct: 401  DVVKHMRQDQITNGMVNAISTGNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQF 459

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSG 545
            + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + + PI +   N G
Sbjct: 460  EKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLG 519

Query: 546  MEKL----ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
            +E +     ++ SY     F VF++G+ +GV +D    V+  R  RR   +   V I  +
Sbjct: 520  VEDVNLLCGEELSYP--NVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTN 577

Query: 602  ELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHGIIELVGTEE 655
                 V I  D GR+ RP ++V+          ++ L      F+  L   ++E +   E
Sbjct: 578  LTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNE 637

Query: 656  EEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQK 715
            E DC  A     + KD         TH E++   LLG+  G+IP+ +H+ + R  YQ   
Sbjct: 638  ENDCNIALYEHTINKDT--------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-A 688

Query: 716  HSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQ 775
               QA+G    N   R+DTL + L YPQ+P+ +T   +           ++   +L  GQ
Sbjct: 689  MGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIE-----------LIEFEKLPAGQ 737

Query: 776  NAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF 835
            NA VAV  + GY+ ED+LV+N+ASL+RG  R    ++ K  +     Q   +    M++ 
Sbjct: 738  NATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLD- 796

Query: 836  GKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA----------------DHSI 879
               +  I R + LD DG    G  +++  +++ K   +                  D  I
Sbjct: 797  AATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPI 856

Query: 880  KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENF 939
              K      ++KV++SSN +      + LRQ R P +GDKFSS HGQKGV G +  QE+ 
Sbjct: 857  TYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDM 916

Query: 940  PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVD 999
            PF   GI PDI++NPH FPSR T G+L+E   GK       G+  G   Y T F    V 
Sbjct: 917  PFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKA------GVLDGRFHYGTAFGGSKVK 970

Query: 1000 AITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHP 1059
             + E L R G++  G   L     GE + + I+ GP +YQ+L HM  DK+  R  GP   
Sbjct: 971  DVCEDLVRHGYNYLGKVHLASQGLGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030

Query: 1060 LTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVI 1119
            LTRQP   R R GG++ GEMERDCLI +GA+  L ERL   SD++++ +C +C       
Sbjct: 1031 LTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQC------- 1083

Query: 1120 QRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
                  G      +C  C S   +    +PY  KLL QEL SM I
Sbjct: 1084 ------GLLGYSGWCHFCKSSCHVSSLRIPYACKLLFQELQSMNI 1122


>gi|402887515|ref|XP_003907137.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 2
            [Papio anubis]
          Length = 1075

 Score =  474 bits (1220), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 350/1104 (31%), Positives = 522/1104 (47%), Gaps = 130/1104 (11%)

Query: 111  PRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIP 170
            P   RL++MTYS+ + V +++              T   Q I +  L        IGR+P
Sbjct: 41   PHECRLRDMTYSAPITVDIEY--------------TRGSQRIIRNALP-------IGRMP 79

Query: 171  VMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVS----N 220
            +M++S  C + G       +  +C  D GGYFI+KG EKV + QEQ+   R+ V      
Sbjct: 80   IMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRKG 139

Query: 221  SMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSD 280
            ++G +V   +  K++R      +M+    +K G   L    LS +IPI I+F A+GV SD
Sbjct: 140  AVGASVTSSTHEKKSR-----TNMA----VKQGRFYLRHNTLSEDIPIVIIFKAMGVESD 190

Query: 281  KEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTF----PPG 336
            +EIV +I     +  ++     S+ +   K   F +   ALKY+   ++        P  
Sbjct: 191  QEIVQMIG---TEEHVMAAFGPSLEEC-QKAQIFTQ-MQALKYIGNKVRRQRMWGGGPKK 245

Query: 337  ESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRR--------KCDNRDDFRNKR 388
               EE     L  S   T    +   +  KC+  A   RR        K D+RD + NKR
Sbjct: 246  TKIEEARE--LLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKR 303

Query: 389  LELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR-PIEYYLDASILTNGLSRAFST 447
            LELAG+LL    +         M K   + +   R  +  +  ++    +TNG+  A ST
Sbjct: 304  LELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAIST 363

Query: 448  GAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKIC 507
            G WS    + +R  G+   L R + +  L  + R   Q + T KV   R   PS WG +C
Sbjct: 364  GNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLC 422

Query: 508  FLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKL----ADDASYSLGGKFK 562
               TP+GE CGLVKNL +   ++T + + PI +   N G+E +     ++ SY     F 
Sbjct: 423  PSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYP--NVFL 480

Query: 563  VFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLV 622
            VF++G+ +GV +D    V+  R  RR   +   V I  +     V I  D GR+ RP ++
Sbjct: 481  VFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYII 540

Query: 623  VENMGK------IKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKK 676
            V+          ++ L      F+  L   ++E +   EE DC  A     + KD     
Sbjct: 541  VKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDT---- 596

Query: 677  PIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLS 736
                TH E++   LLG+  G+IP+ +H+ + R  YQ      QA+G    N   R+DTL 
Sbjct: 597  ----THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-AMGKQAMGTIGYNQQNRIDTLM 651

Query: 737  HQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMN 796
            + L YPQ+P+ +T   +           ++   +L  GQNA VAV  + GY+ ED+LV+N
Sbjct: 652  YLLAYPQKPMVKTKTIE-----------LIEFEKLPAGQNATVAVMSYSGYDIEDALVLN 700

Query: 797  RASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFI 856
            +ASL+RG  R    ++ K  +     Q   +    M++    +  I R + LD DG    
Sbjct: 701  KASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLD-AATRKPIWRHEILDADGICSP 759

Query: 857  GANLQSGDIVIGKYADSGA----------------DHSIKLKHTERGMVQKVVLSSNDDG 900
            G  +++  +++ K   +                  D  I  K      ++KV++SSN + 
Sbjct: 760  GEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAED 819

Query: 901  KNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSR 960
                 + LRQ R P +GDKFSS HGQKGV G +  QE+ PF   GI PDI++NPH FPSR
Sbjct: 820  AFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSR 879

Query: 961  QTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYD 1020
             T G+L+E   GK       G+  G   Y T F    V  + E L R G++  G + +  
Sbjct: 880  MTVGKLIELLAGKA------GVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTS 933

Query: 1021 GRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEME 1080
            G TGE + + I+ GP +YQ+L HM  DK+  R  GP   LTRQP   R R GG++ GEME
Sbjct: 934  GITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEME 993

Query: 1081 RDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSG 1140
            RDCLI +GA+  L ERL   SD++++ +C +C             G      +C  C S 
Sbjct: 994  RDCLIGYGASMLLLERLMISSDAFEVDVCGQC-------------GLLGYSGWCHYCKSS 1040

Query: 1141 DDIVKANVPYGAKLLCQELFSMGI 1164
              +    +PY  KLL QEL SM I
Sbjct: 1041 CHVSSLRIPYACKLLFQELQSMNI 1064


>gi|115396768|ref|XP_001214023.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Aspergillus
            terreus NIH2624]
 gi|114193592|gb|EAU35292.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Aspergillus
            terreus NIH2624]
          Length = 1219

 Score =  474 bits (1220), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 364/1215 (29%), Positives = 568/1215 (46%), Gaps = 178/1215 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN  ++  L+K  +S   +I+    D +           ++F  +
Sbjct: 103  AFLKVKGLVKQHIDSYNYLVEVQLKKIVES--SSIIRSDVDHN---------FYIKFTDI 151

Query: 92   TLDKP-----SFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKT 146
             L  P     S  AG       + P+  RL++ TY++ ++V   + V  ++RV    +  
Sbjct: 152  YLGAPRRADESQDAGPAFTGSTVTPQECRLRDTTYAAPIQVDFDY-VRGRQRVRKRGYA- 209

Query: 147  GREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKG 200
                               IGR+PVM++S  C +      +      C  D GGYFI+ G
Sbjct: 210  -------------------IGRMPVMLRSSKCVLANKSPAEMTVLNECPLDPGGYFIVNG 250

Query: 201  AEKVFVAQEQICLKRLWVSNS------MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGE 254
             EKV + QEQ+   R+ V              +  +E K    IV          +K  +
Sbjct: 251  TEKVILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSKSYIV----------LKKDK 300

Query: 255  KVLSVYFLSTEIPIWILFFALGVSSDKEIVNLI---------DFTCEDCSILNI-LFASI 304
              +    L+ +IPI IL  A+G+++DKE++ L+         DF       +N+ ++   
Sbjct: 301  LYVKHNVLNEDIPIVILLKAMGINTDKEMLLLVAGVDKVYQEDFAINFEEAINLGIYTQQ 360

Query: 305  HDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYM 364
               D      +  R    Y    ++       E+    + +++       + KA ++ +M
Sbjct: 361  QALDWIGARIKINRKQASYRRTHVQEAI----EAIASVIISHIEVKNMNFRPKAIYVAHM 416

Query: 365  VKCLLQAYSGRRKCDNRDDFRNKRLELAGELLER-----------ELKVHIAHARKRMAK 413
             + +L A +     D+RD   NKRLELAG+LL             ++K+++     +  +
Sbjct: 417  ARRVLMAKNDPTLVDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDIKMNVDKVLNKRNR 476

Query: 414  ALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPL 473
            A   D +   +       +  + +T G++RA STG WS    R ER +G+   L R + +
Sbjct: 477  AEAFDAWSVMS-------MHTNHITQGMNRAISTGNWSLKRFRMER-AGVTHVLSRLSYI 528

Query: 474  QTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI 533
              L  + R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL +   ++T+ 
Sbjct: 529  AALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCPADTPEGEACGLVKNLALMTHITTND 588

Query: 534  LE-PIFEQLFNSGMEKLADDASYSLGGK-------FKVFVDGDWIGVCKDSLSFVSELRR 585
             E PI   +F  G E +      +LGGK       + + ++G    + +    F++  RR
Sbjct: 589  EEGPIRNLIFMLGAEDIQ-----TLGGKELYGPGCYTISINGTPTALTRRPKYFLNAFRR 643

Query: 586  KRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYT 638
             RR   +   V I  +  Q  V +  D GRI RPL+VVEN GK       ++ L      
Sbjct: 644  LRRMGRISEFVSIYINHHQHAVHVATDDGRICRPLIVVEN-GKSTVQTHHLEKLREGTMQ 702

Query: 639  FQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGII 698
            F   L  G++E +   EE D      I    KDI +      TH E++   +LG   G+I
Sbjct: 703  FDDFLAQGLVEYLDVNEENDSL----IAIYEKDISETT----THLEIEPFTILGAVAGLI 754

Query: 699  PFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKP 758
            P+ +H+ + R  YQ      QAIG   +N  +R+D++ + + YPQ+P+ ++   +     
Sbjct: 755  PYPHHNQSPRNTYQC-AMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIE----- 808

Query: 759  GYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVD 818
                  +    +L  GQNAIVAV  + GY+ ED+LV+N+ S++RG  R +  R Y   V 
Sbjct: 809  ------LTKYDQLPAGQNAIVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKY---VT 859

Query: 819  NKEMQVKRRSSDDMVNFGKIQ--SKIGRVDSLDDDGFPFIGANLQSGDIVIGK------- 869
            N  ++     + DM+     +  + I +   L+ DG   +G  + +G++ I K       
Sbjct: 860  N--LKSYSNGTKDMLTPPSYENDAPIRKHALLESDGLAAVGEQVNAGEVYINKSTPDQAN 917

Query: 870  -YADSGADHSIKLKHTERGM---------VQKVVLSSNDDGKNFSVVSLRQVRSPCLGDK 919
             +   G D +  + +    M         + +V+LS  ++      V  RQ R P +GDK
Sbjct: 918  SFGIGGPDPNRPINYMPTPMTYKLPDPAYIDQVLLSVTENENQLVKVLTRQTRRPEVGDK 977

Query: 920  FSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALG 979
            FSS HGQKGV+G +  Q + PFT QGI PDI++NPH FPSR T G++LE   GK      
Sbjct: 978  FSSRHGQKGVVGIIADQADMPFTDQGINPDIIMNPHGFPSRMTVGKMLELVAGKA----- 1032

Query: 980  KGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQ 1039
             G+ SG   Y T F    V+ +++ L   GFS  G + L  G TGE +   +F GP +YQ
Sbjct: 1033 -GVLSGQHGYGTCFGGSPVEEMSQILIDKGFSYGGKDYLTSGITGEALPFYVFTGPIYYQ 1091

Query: 1040 RLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFT 1099
            +L HM +DK+  R  GP   LTRQP   R R GG++ GEMERDCLIA+G +  L ERL  
Sbjct: 1092 KLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMI 1151

Query: 1100 LSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQEL 1159
             SD +++ +C KC  +  +              +C+ C S   +VK  +PY AKLL QEL
Sbjct: 1152 SSDRHEIDVCEKCGFMGYL-------------NWCQRCKSSRSVVKMVIPYAAKLLIQEL 1198

Query: 1160 FSMGIT--LKFDTEF 1172
             SM +T  LK + EF
Sbjct: 1199 MSMNVTARLKLEDEF 1213


>gi|449708606|gb|EMD48033.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
            putative [Entamoeba histolytica KU27]
          Length = 1141

 Score =  474 bits (1220), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 356/1175 (30%), Positives = 560/1175 (47%), Gaps = 130/1175 (11%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+S+N FI   +++   +  +   +   DP        R+  +++  V
Sbjct: 48   AFVKARGLVRQHIDSFNYFIDEEIKQIVKANDKITCDA--DP--------RFY-LKYLDV 96

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             +D P         +  + P+  RL++++Y++ +   +Q+                R+  
Sbjct: 97   KVDTPCVEVDY--KKESITPQECRLRDISYTAPILANIQYT---------------RDNK 139

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
            I ++ ++       IG +P+M++S  C +        +  G+C  D GGYFI+KG E+V 
Sbjct: 140  IFRKTVT-------IGYMPIMLQSKHCVLYNNTFEEFIRHGECPMDPGGYFIVKGVERVI 192

Query: 206  VAQEQICLKRLWVSNS----MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYF 261
            ++QEQ+   R+ +  +    +  +V   +   ++R +V L         K G+  L    
Sbjct: 193  LSQEQMSKNRILIETTTQGFLSASVTSATHEVKSRTVVYL---------KKGKLYLKHNS 243

Query: 262  LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNAL 321
            L+ ++PI I+  A+G+ SD E +  +        I +I      D  N+ +  R   N L
Sbjct: 244  LTEDLPIMIVIKAMGMESDMEFLQFVGNHYTSKMINSIEECKAKDVLNQREALRYIGNHL 303

Query: 322  K-YVDKLIKGTTFPPGESTEECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRR 376
            K Y  +    +  P  E   + +   + P +    +  K K  ++  MV  +L+A     
Sbjct: 304  KIYTGQKGYISKRPKIEEARDVLANLVLPHIEVNRYNFKTKIIYIALMVNWILKA-DETG 362

Query: 377  KCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYY--LDA 434
            + D++D + NKR+ELAG+L+    +         +  A  + L         +    +  
Sbjct: 363  ELDDKDYYGNKRMELAGQLMSLLFEDLFKQFNTDLQNAANKGLTKKSRSETFDIIKCISP 422

Query: 435  SILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGD 494
              +T GL  + STG W       +R +GI   L R + +  L  + R     + T KV  
Sbjct: 423  HRITQGLIHSLSTGNWVLKRFNMDR-AGITQVLSRLSYISALGMMTRLNSHFEKTRKVSG 481

Query: 495  ARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGME--KLAD 551
             R    S WG +C   TP+GE+CGLVKN  +   V+T S  E I   LFN G+E   L  
Sbjct: 482  PRSLQGSQWGMVCPSDTPEGESCGLVKNFSLLTEVTTDSNDEAIVTMLFNLGVEDANLIS 541

Query: 552  DASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFM 611
                +    + VF++G  +G+ ++ + F+ + R  RR   L  +V +  +E+Q  + I  
Sbjct: 542  GDEVNAPSSYLVFLNGQLLGIHQNPIHFLKQCRLLRRHGRLGKKVSLHLNEMQRSINISS 601

Query: 612  DAGRILRPLLVVENM-GKIKSLEGKNY-----TFQALLDHGIIELVGTEEEEDCCTAWGI 665
            D GR+ RPL+VVEN   KI   E ++      + +  L  G+IE +   EE +   A   
Sbjct: 602  DGGRVCRPLIVVENCKSKIGPKEIRDIVEGFKSIEDCLKEGLIEYLDVNEENNSYIAIN- 660

Query: 666  KYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPT 725
                   E++     TH E+D   +LG+  G+IP+ +H+ + R  YQ      QAIG   
Sbjct: 661  -------ENEINEHTTHLEIDPLSILGVVAGLIPYPHHNQSPRNTYQCA-MGKQAIGTIG 712

Query: 726  TNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHL 785
             N   RVDTL + L+YPQ P+ +T   D           ++   +L  GQNA+VAV  + 
Sbjct: 713  YNQFKRVDTLLYLLYYPQIPMVKTKTID-----------MINFDKLPAGQNAMVAVMSYS 761

Query: 786  GYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRV 845
            GY+ ED+ ++N+AS++RG  R    R  KAE   K  + K  + D +V     + ++ + 
Sbjct: 762  GYDIEDASILNKASIDRGYGRCFVYR--KAECVIK--KYKNGACDRVVCPTDEERELPKY 817

Query: 846  DSLDDDGFPFIGANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQ 890
             SLD DG    G+ L  G I + K                 D      +  K      V 
Sbjct: 818  KSLDFDGVCSPGSILNPGSIYLNKQVPLNTIGTLTTDTIKDDEYRREVLTYKGPVPSYVD 877

Query: 891  KVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDI 950
            +V+++SN++      +SLR  R P LGDKFSS HGQKGV G + +QE+ PFT  GI PD+
Sbjct: 878  QVLITSNEEEPLKVKISLRTSRRPELGDKFSSRHGQKGVTGLIVNQEDMPFTNTGICPDV 937

Query: 951  VINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGF 1010
            ++NPH FPSR T G+LLE   GK       G+  G  +Y T F    +D I++ L  AG+
Sbjct: 938  IMNPHGFPSRMTVGKLLELVSGKA------GLMDGSFKYGTAFGGDKLDDISKILIEAGY 991

Query: 1011 SKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKR 1070
            S  G E LY G TG+ + + IFIGP +YQ+L HM  DK+  R  GP   LTRQP   R R
Sbjct: 992  SYDGKEELYSGITGKALHAYIFIGPVYYQKLKHMVLDKMHARARGPKSSLTRQPTEGRSR 1051

Query: 1071 FGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVR 1130
             GG++ GEMERDCLI +GA   L ERL   SD++++ +C+KC  + +             
Sbjct: 1052 DGGLRLGEMERDCLIGYGATNLLLERLMYSSDAFKVCVCKKCGLIGH------------- 1098

Query: 1131 GPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
              YC+ C+S        +PY  KLL QE+ SM + 
Sbjct: 1099 SGYCKFCESSLYCTNVTMPYACKLLFQEMQSMNVV 1133


>gi|401827970|ref|XP_003888277.1| RNA polymerase subunit beta [Encephalitozoon hellem ATCC 50504]
 gi|392999549|gb|AFM99296.1| RNA polymerase subunit beta [Encephalitozoon hellem ATCC 50504]
          Length = 1110

 Score =  474 bits (1220), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 366/1203 (30%), Positives = 564/1203 (46%), Gaps = 169/1203 (14%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
            FF E GLV   I SY+ F+ + ++    +    IV+   D +       +Y  +R G  +
Sbjct: 13   FFKEKGLVRQHIESYDYFVDHEIKALVRA--NQIVDSDIDHT----FYLKYLDIRVGMPS 66

Query: 93   LDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYI 152
            +++           +++FP   RL++MTYS+ + V ++   Y + R           Q I
Sbjct: 67   VEENMV-------NYNVFPIECRLRDMTYSANIYVDIE---YVRNR-----------QII 105

Query: 153  QKEVLSDETTNIIIGRIPVMVKSDLCWM----------------KGVEKGDCDFDHGGYF 196
             K        ++ IG++PVM++S  C +                K  E  +C  D GGYF
Sbjct: 106  VKR-------DVCIGKMPVMLRSSRCHLRKEAKISIEGNRAKDRKIKESQECPLDVGGYF 158

Query: 197  IIKGAEKVFVAQEQICLKRLWVSNS---MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGG 253
            II+G E+V + QEQ+   R+ + +    +  +V   ++  +++  V + D   +      
Sbjct: 159  IIRGIERVILIQEQLSKNRIIIESGPKGLFASVTSSTDEHKSKTSVTIKDDCYY------ 212

Query: 254  EKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDE 313
               L     + EIP+ I+  ALG++ DKEI       C      +I+  S  +  +K  E
Sbjct: 213  ---LKNSMFNEEIPVVIVMKALGLTQDKEIAE-----CVGKEYFDIMVPSFGECISK--E 262

Query: 314  FRKGRNALKYVDKLIKGTTFPPGESTEECMNTY---LFPSLH----GTKQKARFLGYMVK 366
                  AL Y+   IK    P     EE +      + P++       ++K  ++  M++
Sbjct: 263  VFTKEQALLYISNYIK--LRPEDNRIEEVLTILSEKVLPNVQVEGCNLRKKGIYIALMIR 320

Query: 367  CLLQAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGD 422
             L Q      K D++D   NKR ELAG+LL    E   K      +K + K L +     
Sbjct: 321  RLTQTRLNILKEDDKDFVGNKRFELAGQLLSILFEDTFKRFNFELKKSIDKILSKRSRAQ 380

Query: 423  RTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
                     L A+++T+ LSRA STG W+    R ER SG+   L R + +  L  + + 
Sbjct: 381  EFDALTFLNLQANMITSTLSRAISTGNWNLKRFRMER-SGVTHVLSRHSYISALGMMTKI 439

Query: 483  RQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQL 541
                + T KV   R  H S WG +C + TP+GE+CGLVKNL +   ++T S + P+ + +
Sbjct: 440  NSHFEKTRKVSGPRSLHTSSWGMLCPVDTPEGESCGLVKNLALLAEITTDSDVRPVLDLI 499

Query: 542  FNSGMEKLADDASYSL--GGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIK 599
            F  G+  +    +  +   G F VF++GD IG+      FV + +  RR+  +   V I 
Sbjct: 500  FKLGVVDINSVYTREIHQNGMFSVFLNGDIIGIIDKVDFFVEQFKLHRRKGLVGKFVSIY 559

Query: 600  RDELQSEVRIFMDAGRILRPLLVVE--------------------NMGKIKSLE-GKNY- 637
            +   +  + I  D GR+ RPL+V++                    N+ +   +E GK + 
Sbjct: 560  KVMTERVIHIASDNGRVCRPLIVIDKKKINRMIVSNEIDKCFEVLNISERPEMERGKTFL 619

Query: 638  -------TFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFL 690
                   +F  LL+ G IE +   EE DC  A   + ++++         TH E+    +
Sbjct: 620  DCYLKYKSFSDLLEEGFIEYLDVNEENDCLVALKPEDMVEET--------THLEISEFAI 671

Query: 691  LGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTM 750
            LG   G++PF +H+ + R  YQ      QAIG  + N   R D +  QL Y  RP+  T 
Sbjct: 672  LGYVAGLVPFPHHNQSPRNTYQCA-MGKQAIGHISLNVKKRFDPVILQLTYTHRPMVSTK 730

Query: 751  ISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHI 810
            I D +      +N      E+  GQNA+VAV  + GY+ ED+LV+N+ S+ERG+FR E  
Sbjct: 731  ILDLIN-----YN------EIPAGQNAMVAVMSYSGYDIEDALVLNKTSIERGLFRVE-- 777

Query: 811  RSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKY 870
              YK         +K+ SS        +     +   LD+DG    G  ++ G I + K 
Sbjct: 778  -VYKTTT----TLLKKHSS----GMSDVLWPNPKESVLDEDGLGKPGRMVKDGTIYVNKM 828

Query: 871  ADSGADHSI--KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKG 928
            +     +    K+   +   + KV+++ + D      + LRQ R P +GDK SS HGQKG
Sbjct: 829  SPVEGIYKFTGKVHRGDPAYIDKVLITKSQDQVLIKTM-LRQTRPPEIGDKLSSRHGQKG 887

Query: 929  VLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKR 988
            V+G +  QE+ PF  QGIVPDI++NPH FPSR T G+++E   GK       G+  G   
Sbjct: 888  VVGLIVRQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKIIELISGKA------GLMEGKIF 941

Query: 989  YATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDK 1048
             +T F   SV+     L R GFS  G +    G TG  + + IF GP FYQRL HM  DK
Sbjct: 942  DSTAFKENSVEETCNILSRHGFSYSGKDCFTSGTTGAPLTAYIFFGPVFYQRLKHMVADK 1001

Query: 1049 VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHI 1108
            +  R  GP   LTRQP   R + GG+K GEMERDCLI +GA++ + ERL   SD ++ ++
Sbjct: 1002 IHMRARGPRAILTRQPTEGRSKDGGLKLGEMERDCLIGYGASSLITERLMISSDVFEAYV 1061

Query: 1109 CRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
            C+ C  +A             +G  C +     +  K  +PY  KLL QEL SM I  + 
Sbjct: 1062 CKSCGVLA------------FKG--CCVACKDKNPTKIKMPYACKLLFQELMSMNILPRL 1107

Query: 1169 DTE 1171
              E
Sbjct: 1108 HLE 1110


>gi|344266576|ref|XP_003405356.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
            subunit RPC2-like [Loxodonta africana]
          Length = 1133

 Score =  474 bits (1219), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 347/1104 (31%), Positives = 523/1104 (47%), Gaps = 130/1104 (11%)

Query: 111  PRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIP 170
            P   RL++MTYS+ + V +++   +Q+ + +                      + IGR+P
Sbjct: 99   PHECRLRDMTYSAPITVDIEYTRGSQRIIRN---------------------ALPIGRMP 137

Query: 171  VMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVS----N 220
            +M++S  C + G       +  +C  D GGYFI+KG EKV + QEQ+   R+ V      
Sbjct: 138  IMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRKG 197

Query: 221  SMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSD 280
            ++G +V   +  K++R      +M+    +K G   L    LS +IPI I+F A+GV SD
Sbjct: 198  AVGASVTSSTHEKKSR-----TNMA----VKQGRFYLRHNTLSEDIPIVIIFKAMGVESD 248

Query: 281  KEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTF----PPG 336
            +EIV +I     +  ++     S+ +   K   F +   ALKY+   ++        P  
Sbjct: 249  QEIVQMIG---TEEHVMAAFGPSLEEC-QKAQIFTQ-MQALKYIGNKVRRQRLWGGGPKK 303

Query: 337  ESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRR--------KCDNRDDFRNKR 388
               EE     L  S   T    +   +  KC+  A   RR        K D+RD + NKR
Sbjct: 304  TKMEEARE--LLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKR 361

Query: 389  LELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR-PIEYYLDASILTNGLSRAFST 447
            LELAG+LL    +         M K   + +   R  +  +  ++    +TNG+  A ST
Sbjct: 362  LELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAIST 421

Query: 448  GAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKIC 507
            G WS    + +R  G+   L R + +  L  + R   Q + T KV   R   PS WG +C
Sbjct: 422  GNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLC 480

Query: 508  FLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKL----ADDASYSLGGKFK 562
               TP+GE CGLVKNL +   ++T + + PI +   N G+E +     ++ SY     F 
Sbjct: 481  PSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYP--NVFL 538

Query: 563  VFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLV 622
            VF++G+ +GV +D    V+  R  RR   +   V I  +     V I  D GR+ RP ++
Sbjct: 539  VFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYII 598

Query: 623  VE------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKK 676
            V+          ++ L      F+  L   ++E +   EE DC  A     + KD     
Sbjct: 599  VKKEKPAVTAKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDT---- 654

Query: 677  PIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLS 736
                TH E++   LLG+  G+IP+ +H+ + R  YQ      QA+G    N   R+DTL 
Sbjct: 655  ----THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-AMGKQAMGTIGYNQRNRIDTLM 709

Query: 737  HQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMN 796
            + L YPQ+P+ +T   +           ++   +L  GQNA VAV  + GY+ ED+LV+N
Sbjct: 710  YLLAYPQKPMVKTKTIE-----------LIEFEKLPAGQNATVAVMSYSGYDIEDALVLN 758

Query: 797  RASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFI 856
            +ASL+RG  R    ++ K  +     Q   +    M++    +  I R + LD DG    
Sbjct: 759  KASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLD-AATRKPIWRHEILDADGICSP 817

Query: 857  GANLQSGDIVIGKYADSGA----------------DHSIKLKHTERGMVQKVVLSSNDDG 900
            G  +++  +++ K   +                  D  I  K      ++KV++SSN + 
Sbjct: 818  GEKVENKQVLVNKSMPTVTQIPLEGSNIPQQPQYKDVPITYKGATDSYIEKVMISSNAED 877

Query: 901  KNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSR 960
                 + LRQ R P +GDKFSS HGQKGV G +  QE+ PF   GI PDI++NPH FPSR
Sbjct: 878  AFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSR 937

Query: 961  QTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYD 1020
             T G+L+E   GK       G+  G   Y T F    V  + E L R G++  G + +  
Sbjct: 938  MTVGKLIELLAGKA------GVLDGKFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTS 991

Query: 1021 GRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEME 1080
            G TGE + + I+ GP +YQ+L HM  DK+  R  GP   LTRQP   R R GG++ GEME
Sbjct: 992  GITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEME 1051

Query: 1081 RDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSG 1140
            RDCLI +GA+  L ERL   SD++++ +C +C             G      +C  C S 
Sbjct: 1052 RDCLIGYGASMLLLERLMISSDAFEVDVCGQC-------------GLLGYSGWCHYCKSS 1098

Query: 1141 DDIVKANVPYGAKLLCQELFSMGI 1164
              +    +PY  KLL QEL SM I
Sbjct: 1099 CHVSSLRIPYACKLLFQELQSMNI 1122


>gi|321261728|ref|XP_003195583.1| DNA-directed RNA polymerase [Cryptococcus gattii WM276]
 gi|317462057|gb|ADV23796.1| DNA-directed RNA polymerase, putative [Cryptococcus gattii WM276]
          Length = 1129

 Score =  474 bits (1219), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 370/1192 (31%), Positives = 550/1192 (46%), Gaps = 147/1192 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQK--AFDSFGETIVEPGYDPSKKGEGEWRYASMRFG 89
            +F    GLV   ++S+N F+   ++   A +S   + + P Y          RY  +R G
Sbjct: 30   AFLKVKGLVKQHLDSFNYFVNVDIKAILAANSLVISDINPKY--------YIRYTDIRVG 81

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
            +      +  A        + P   RL + TYS+ + V V++               G E
Sbjct: 82   RPARHDANQVASA------LSPMECRLTDSTYSAPIYVDVEYM--------------GEE 121

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
            +  ++         + IG +PVM++SDLC +KG         G+C  D GGYF++KG EK
Sbjct: 122  KRSKQR-------GVQIGMLPVMLRSDLCNLKGKNEAELARMGECPMDPGGYFVVKGTEK 174

Query: 204  VFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLS 263
            V + QEQ+   R+ V       V  +  +  +  +V+   +SK   +      L      
Sbjct: 175  VILVQEQLSKNRILVMKDKKDEVMAEVTSSTHDRVVKTYVVSKANRL-----YLRHNSFK 229

Query: 264  TEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKY 323
              IPI I   A+G+++DKEI+ LI   C         F    +   K   F + R AL++
Sbjct: 230  EFIPIVIALKAMGLTADKEILQLI---CGSDERYQEAFGVSLEEAAKEKTFTR-RQALEW 285

Query: 324  VDKLIKGTTFPPGESTEEC-MNTYLFPSLHGTKQKA---------RFLGYMVKCLLQAYS 373
            +     G    P ++ ++   N  L PS    +  A         R + +  KC+  A  
Sbjct: 286  I-----GARVSPNQAKDDSGSNQKLTPSDIAQQALAAMVLGHVPVRNMNFRPKCIYLATM 340

Query: 374  GRR---------KCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLY 420
             RR           D+RD   NKRLELAG+LL    E   K   +  +KRM K L++   
Sbjct: 341  TRRVLMAMIDDHMVDDRDYVGNKRLELAGQLLSLLFEDSFKTFNSELKKRMDKILEKPNR 400

Query: 421  GDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLR 480
                            +T    R+ STG WS      ER +G+   L R + +  L  + 
Sbjct: 401  AGPFDAGTLIRQGGDPITQAFVRSISTGNWSLKRFHVER-AGVTHVLSRLSFIAALGMMT 459

Query: 481  RTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFE 539
            R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + E P+ +
Sbjct: 460  RISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVPEAPLVK 519

Query: 540  QLFNSGMEKLADDASYSL--GGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVE 597
              F  G+E ++      L   G   V V+G  IGV   +  FV + R+ RR   +   V 
Sbjct: 520  MAFMLGVEDISLVTGNELYRPGVHMVQVNGTLIGVTNMAKKFVRQFRKLRRAGRMSEFVS 579

Query: 598  IKRDELQSEVRIFMDAGRILRPLLVVE------NMGKIKSLEGKNYTFQALLDHGIIELV 651
            I  +     + I  D GRI RP+++VE          ++ L+    TF   L  G++E +
Sbjct: 580  IFINHHHKIIYIASDGGRICRPMIIVEKGRSRVTTEHVRLLKEGKVTFDHFLRAGLVEYL 639

Query: 652  GTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLY 711
               EE D   A        +IE+      TH E++   +LG   G+IP+ +H+ + R  Y
Sbjct: 640  DVNEENDAFIAC----YENEIEEGT----THLEIEPFTILGAVAGLIPYPHHNQSPRNTY 691

Query: 712  QSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPEL 771
            Q      QAIG    N   R+DTL + + YPQ+P+ +T   + +     G+N      +L
Sbjct: 692  QC-AMGKQAIGAIAYNQLNRIDTLLYLMTYPQQPMVKTKTIELI-----GYN------KL 739

Query: 772  YNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDD 831
              GQNA VAV  + GY+ ED+L++NRAS++RG  R   ++          M+     S +
Sbjct: 740  PAGQNATVAVMSYSGYDIEDALILNRASVDRGFGRCHVLKKV-----TTPMRTFHNGSHE 794

Query: 832  MVNFGKIQSKIGRVDSLDD-DGFPFIGANLQSGDIVI---------GKYADSGADHSIKL 881
               +     +      +D  DG    GA +   D++I         G  AD+     + +
Sbjct: 795  RTAYPDPPPRPDAYTFVDKADGMTAPGATINQYDVMIHRETPIDTRGGGADTQLYKPMPV 854

Query: 882  KH--TERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENF 939
             H   E  +V KV+L+  +DG    +++ RQ R P LGDKFSS HGQKGV G +  Q + 
Sbjct: 855  THKTPEPILVDKVMLTEGEDGALIKILT-RQTRRPELGDKFSSRHGQKGVCGLIVPQADM 913

Query: 940  PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVD 999
            PF  QGIVPDI++NPH FPSR T G+++E   GK       G+ +G  +Y T F    V 
Sbjct: 914  PFNDQGIVPDIIMNPHGFPSRMTVGKMIELLSGKA------GVIAGKLQYGTAFGGSKVV 967

Query: 1000 AITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHP 1059
             +++ L   GFS  G + L  G TG+ + + ++ GP +YQ+L HM  DK+  R TGP   
Sbjct: 968  DMSQILIDNGFSYGGKDMLTSGITGQPMEAYVYFGPIYYQKLKHMVMDKMHARPTGPRAN 1027

Query: 1060 LTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVI 1119
            LTRQP   R + GG++ GEMERDCLI +GA   L ERL   SD+++  +C  C       
Sbjct: 1028 LTRQPTEGRSKDGGLRLGEMERDCLIGYGATQLLLERLMISSDAFETQVCESC------- 1080

Query: 1120 QRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                  G      +C  C SG+ +V   +PY AKLL QEL  M I  K   E
Sbjct: 1081 ------GMLGYNNWCPKCKSGNGVVGLTIPYAAKLLIQELMGMNIMPKLCLE 1126


>gi|432863563|ref|XP_004070128.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like [Oryzias
            latipes]
          Length = 1093

 Score =  474 bits (1219), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 368/1181 (31%), Positives = 553/1181 (46%), Gaps = 170/1181 (14%)

Query: 28   KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYAS 85
            K   +F    GLV   I+S+N FI   ++K   +  E I     DP       W  +Y +
Sbjct: 28   KLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKA-NEKITSDA-DPM------WYLKYLN 79

Query: 86   MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
            +  G   +++ SF          + P   RL++MTYS+ + V +++              
Sbjct: 80   IYVGMPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEY-------------- 119

Query: 146  TGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIK 199
            T   Q I +  L        IGR+P+M++S  C + G       +  +C  D GGYFI+K
Sbjct: 120  TRGSQRIIRNALP-------IGRMPIMLRSSNCVLTGKTPMEFSKLNECPLDPGGYFIVK 172

Query: 200  GAEKVFVAQEQICLKRLWVSN----SMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEK 255
            G EKV + QEQ+   R+ V      ++G +V   +  K++R  +          +K G  
Sbjct: 173  GQEKVILIQEQLSKNRIIVDQDRKGTVGASVTSSTHEKKSRTNI---------IVKQGRF 223

Query: 256  VLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFR 315
             L    LS + PI I+F  +GV SD+EIV +I    E+  + N                 
Sbjct: 224  YLRHNTLSEDAPIAIIFKGMGVESDQEIVQMIG--TEEHVMAN----------------- 264

Query: 316  KGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLH----GTKQKARFLGYMVKCLLQA 371
                             F P  S EEC    +F          + K  +L  MV+ ++ A
Sbjct: 265  -----------------FAP--SLEECQKAQIFTQTQVKEFNFRAKCIYLAVMVRRVILA 305

Query: 372  YSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR-PIEY 430
              G  K D+RD + NKRLELAG+LL    +         + K   + +   R  +  +  
Sbjct: 306  -QGENKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSELKKIADQIIPKQRAAQFDVVK 364

Query: 431  YLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTG 490
            ++    +TNG+  A STG WS    + +R  G+   L R + +  L  + R   Q + T 
Sbjct: 365  HMRQDQITNGMVNAISTGNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQFEKTR 423

Query: 491  KVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKL 549
            KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + + PI +   N G+E +
Sbjct: 424  KVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLALNLGVEDV 483

Query: 550  ----ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQS 605
                 ++ SY     F VF++G+ +GV ++    VS  R  RR   +   V I  +    
Sbjct: 484  NLLCGEELSYP--SVFLVFLNGNILGVIRNHHKLVSTFRLMRRAGFINEFVSISTNLTDR 541

Query: 606  EVRIFMDAGRILRPLLVVEN---MGKIKSLE--GKNY-TFQALLDHGIIELVGTEEEEDC 659
             V I  D GR+ RP ++V+    M K K +E   + Y  F+  L  G++E +   EE DC
Sbjct: 542  CVYISSDGGRLCRPYIIVKKGQPMVKSKHIEDLSQGYRNFEDFLHEGLVEYLDVNEENDC 601

Query: 660  CTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQ 719
              A     L + + +K+    TH E++   LLG+  G+IP+ +H+ + R  YQ      Q
Sbjct: 602  QIA-----LYEHMINKET---THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-AMGKQ 652

Query: 720  AIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIV 779
            A+G    N   R+DTL + L YPQRP+ +T   +           ++   +L  GQNA V
Sbjct: 653  AMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIE-----------LIDFEKLPAGQNATV 701

Query: 780  AVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQ 839
            AV  + GY+ ED+LV+N+ASL+RG  R    ++ K  +     Q   +    M++    +
Sbjct: 702  AVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNTKCTLRRYTNQTFDKVMGPMLD-AATR 760

Query: 840  SKIGRVDSLDDDGFPFIGANLQSGDIVIGKY------------ADSGADH----SIKLKH 883
              + R + LD DG    G  +++  I++ K             A  G        I  K 
Sbjct: 761  KPLWRHNILDADGICCPGEKVENKQILVNKSMPTVTQTPLEGSAQPGQPQYKEVPISYKG 820

Query: 884  TERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTI 943
            +    ++KV++SSN +      + LRQ R P +GDKFSS HGQKGV G +  QE+ PF  
Sbjct: 821  STDSYIEKVMISSNAEDAFLIKILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCD 880

Query: 944  QGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITE 1003
             G+ PDI++NPH +PSR T G+L+E   GK       G+  G   Y T F    V  + E
Sbjct: 881  SGVCPDIIMNPHGYPSRMTVGKLIELLAGKA------GVLDGRFHYGTAFGGSKVKDVCE 934

Query: 1004 QLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQ 1063
             L R G++  G + +  G TGE + + I+ GP +YQ+L HM  DK+  R  GP   LTRQ
Sbjct: 935  DLIRYGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQ 994

Query: 1064 PVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVV 1123
            P   R R GG++ GEMERDCLI +GA+  L ERL   SD++++ +C +C           
Sbjct: 995  PTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQC----------- 1043

Query: 1124 GGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
              G      +C  C S   +    +PY  KLL QEL SM I
Sbjct: 1044 --GLLGYSGWCHYCKSSCHVSSLKIPYACKLLFQELQSMNI 1082


>gi|19074837|ref|NP_586343.1| DNA-DIRECTED RNA POLYMERASE III SUBUNIT 2 (130kDa SUBUNIT)
            [Encephalitozoon cuniculi GB-M1]
 gi|19069562|emb|CAD25947.1| DNA-DIRECTED RNA POLYMERASE III SUBUNIT 2 (130kDa SUBUNIT)
            [Encephalitozoon cuniculi GB-M1]
          Length = 1110

 Score =  474 bits (1219), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 364/1203 (30%), Positives = 569/1203 (47%), Gaps = 169/1203 (14%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
            FFNE GLV   I SY+ F+ + ++    +    IV+   D +       +Y  +R    +
Sbjct: 13   FFNEKGLVRQHIESYDYFVDHEIKALVRA--NQIVDSDIDHT----FYLKYLDIRVAMPS 66

Query: 93   LDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYI 152
            +++           +++FP   RL+++TYS+ + V ++   Y + R           Q I
Sbjct: 67   VEENMV-------NYNVFPIECRLRDITYSANIYVDIE---YVRNR-----------QII 105

Query: 153  QKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG----------------DCDFDHGGYF 196
             K        ++ IG++PVM++S  C ++   KG                +C  D GGYF
Sbjct: 106  VKR-------DVCIGKMPVMLRSSRCHLRRETKGPMEGRKTKDRRIRESQECPLDVGGYF 158

Query: 197  IIKGAEKVFVAQEQICLKRLWVSNS---MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGG 253
            I++G E+V + QEQ+   R+ + +    +  +V   ++  +++  V   D   +      
Sbjct: 159  IVRGIERVVLIQEQLSKNRIIIESGPKGLFASVTSSTDEHKSKTSVTTRDDCYY------ 212

Query: 254  EKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDE 313
               L     S E+P+ I+  ALG+  D+E+       C       I+  S  +  +K   
Sbjct: 213  ---LKNSMFSEEVPVVIMMKALGLVQDREVAE-----CVGKEYFEIMVPSFGECMSKGIF 264

Query: 314  FRKGRNALKYVDKLIKGTTFPPGESTEECMNTY---LFPSLH----GTKQKARFLGYMVK 366
             R+   AL Y+   IK    P     EE +      + P++       ++K  ++  MV+
Sbjct: 265  TRE--QALLYISSYIKLK--PEDNRIEEVLTVLSEKVLPNVQIEGCDLRKKGIYIALMVR 320

Query: 367  CLLQAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGD 422
             L Q      + D++D   NKR ELAG+LL    E   K      +K + K L +     
Sbjct: 321  RLAQTKLNILREDDKDFVGNKRFELAGQLLSILFEDTFKRFNFELKKSIDKILSKRSRAQ 380

Query: 423  RTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
                     L A+++T+ L+RA STG W+    R ER SG+   L R + +  L  + + 
Sbjct: 381  EFDALTFLNLQANMITSTLARAISTGNWNLKRFRMER-SGVTHVLSRHSYISALGMMTKI 439

Query: 483  RQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQL 541
                + T KV   R  H S WG +C + TP+GE+CGLVKNL +   ++T S  +PI + +
Sbjct: 440  NSHFEKTRKVSGPRSLHTSSWGMLCPVDTPEGESCGLVKNLALLAEITTNSDTKPILDTV 499

Query: 542  FNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIK 599
            +  G+  +    +  +  K  F VF++GD IG+   +   V + +  RR+  +   V I 
Sbjct: 500  YKLGVVDINSVYTREIHQKDMFSVFLNGDIIGITNRADFLVEQFKLHRRKGLVGKFVSIY 559

Query: 600  RDELQSEVRIFMDAGRILRPLLVVE--------------------NMGKIKSLEG----- 634
            +  ++  + I  D GR+ RPL++++                    N+ +  ++E      
Sbjct: 560  KVTVERVIHIASDNGRVCRPLIIIDKNRINQTIISNQMDECLKALNISEKVAIESGKSLF 619

Query: 635  ----KNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFL 690
                K  +F  LL+ G IE +   EE DC  A   +    DI ++     TH E+    +
Sbjct: 620  DCYLKYKSFTDLLEEGFIEYLDVNEENDCLVALKPE----DIGEET----THLEISEFAI 671

Query: 691  LGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTM 750
            LG   G++PF +H+ + R  YQ      QAIG  + N   R D++  QL Y  RP+  T 
Sbjct: 672  LGYVAGLVPFPHHNQSPRNTYQCA-MGKQAIGHISLNVKKRFDSVILQLTYTHRPMVSTK 730

Query: 751  ISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHI 810
            I D +      +N      E+  GQNA+VAV  + GY+ ED+LV+N+ S+ERG+FR    
Sbjct: 731  ILDLIN-----YN------EIPAGQNAMVAVMSYSGYDIEDALVLNKTSVERGLFR---- 775

Query: 811  RSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKY 870
                 EV      + ++ S+ M +      K      LD+DG    G  ++ G + + K 
Sbjct: 776  ----VEVYKTTTTLLKKHSNGMSDVLWPNPK---ESVLDEDGLGKPGKMVRDGTVYVNKM 828

Query: 871  A--DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKG 928
            +  D     + K+   +   + K++++ + D      + LRQ R P +GDKFSS HGQKG
Sbjct: 829  SPVDGTYKFTGKVHRGDPAYIDKILITKSQDQVLIKTM-LRQTRVPEIGDKFSSRHGQKG 887

Query: 929  VLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKR 988
            V+G L  QE+ PF  QGIVPDI++NPH FPSR T G+++E   GK       G+  G   
Sbjct: 888  VVGLLVRQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKIVELISGKA------GVLEGQIL 941

Query: 989  YATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDK 1048
             +T F   SV+   E L + GFS  G +    G TG  + + IF GP FYQRL HM  DK
Sbjct: 942  DSTAFKENSVEQTCELLIKHGFSYSGKDCFTSGTTGAPLAAYIFFGPVFYQRLKHMVADK 1001

Query: 1049 VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHI 1108
            +  R  GP   LTRQP   R + GG+K GEMERDCLI +GA++ + ERL T SD ++ ++
Sbjct: 1002 IHMRARGPRAILTRQPTEGRSKDGGLKLGEMERDCLIGYGASSLITERLMTSSDVFEAYV 1061

Query: 1109 CRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
            CR C  +A             +G  C +   G   VK  +PY  KLL QEL SM I  + 
Sbjct: 1062 CRSCGVLA------------FKG--CCVACKGTKPVKVKMPYACKLLFQELMSMNILPRL 1107

Query: 1169 DTE 1171
              E
Sbjct: 1108 HIE 1110


>gi|449328562|gb|AGE94839.1| DNA-directed RNA polymerase III subunit 2 130kDa subunit
            [Encephalitozoon cuniculi]
          Length = 1110

 Score =  474 bits (1219), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 363/1203 (30%), Positives = 567/1203 (47%), Gaps = 169/1203 (14%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
            FFNE GLV   I SY+ F+ + ++    +    IV+   D +       +Y  +R    +
Sbjct: 13   FFNEKGLVRQHIESYDYFVDHEIKALVRA--NQIVDSDIDHT----FYLKYLDIRVAMPS 66

Query: 93   LDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYI 152
            +++           +++FP   RL+++TYS+ + V ++   Y + R           Q I
Sbjct: 67   VEENMV-------NYNVFPIECRLRDITYSANIYVDIE---YVRNR-----------QII 105

Query: 153  QKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG----------------DCDFDHGGYF 196
             K        ++ IG++PVM++S  C ++   KG                +C  D GGYF
Sbjct: 106  VKR-------DVCIGKMPVMLRSSRCHLRRETKGPMEGRKTKDRRIRESQECPLDVGGYF 158

Query: 197  IIKGAEKVFVAQEQICLKRLWVSNS---MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGG 253
            I++G E+V + QEQ+   R+ + +    +  +V   ++  +++  V   D   +      
Sbjct: 159  IVRGIERVVLIQEQLSKNRIIIESGPKGLFASVTSSTDEHKSKTSVTTRDDCYY------ 212

Query: 254  EKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDE 313
               L     S E+P+ I+  ALG+  D+E+       C       I+  S  +  +K  E
Sbjct: 213  ---LKNSMFSEEVPVVIMMKALGLVQDREVAE-----CVGKEYFEIMAPSFGECMSK--E 262

Query: 314  FRKGRNALKYVDKLIKGTTFPPGESTEECMNTY---LFPSLH----GTKQKARFLGYMVK 366
                  AL Y+   IK    P     EE +      + P++       ++K  ++  MV+
Sbjct: 263  IFTREQALLYISSYIKLK--PEDNRIEEVLTVLSEKVLPNVQIEGCDLRKKGIYIALMVR 320

Query: 367  CLLQAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGD 422
             L Q      + D++D   NKR ELAG+LL    E   K      +K + K L +     
Sbjct: 321  RLAQTKLNILREDDKDFVGNKRFELAGQLLSILFEDTFKRFNFELKKSIDKILSKRSRAQ 380

Query: 423  RTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
                     L A+++T+ L+RA STG W+    R ER SG+   L R + +  L  + + 
Sbjct: 381  EFDALTFLNLQANMITSTLARAISTGNWNLKRFRMER-SGVTHVLSRHSYISALGMMTKI 439

Query: 483  RQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQL 541
                + T KV   R  H S WG +C + TP+GE+CGLVKNL +   ++T S  +PI + +
Sbjct: 440  NSHFEKTRKVSGPRSLHTSSWGMLCPVDTPEGESCGLVKNLALLAEITTNSDTKPILDTV 499

Query: 542  FNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIK 599
            +  G+  +    +  +  K  F VF++GD IG+   +   V + +  RR+  +   V I 
Sbjct: 500  YKLGVVDINSVYTREIHQKDMFSVFLNGDIIGITNRADFLVEQFKLHRRKGLVGKFVSIY 559

Query: 600  RDELQSEVRIFMDAGRILRPLLVVE--------------------NMGKIKSLEG----- 634
            +  ++  + I  D GR+ RPL++++                    N+ +  ++E      
Sbjct: 560  KVTVERVIHIASDNGRVCRPLIIIDKNRINQTIISNQMDECLKALNISEKVAIESGKSLF 619

Query: 635  ----KNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFL 690
                K  +F  LL+ G IE +   EE DC  A   +    DI ++     TH E+    +
Sbjct: 620  DCYLKYKSFTDLLEEGFIEYLDVNEENDCLVALKPE----DIGEET----THLEISEFAI 671

Query: 691  LGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTM 750
            LG   G++PF +H+ + R  YQ      QAIG  + N   R D++  QL Y  RP+  T 
Sbjct: 672  LGYVAGLVPFPHHNQSPRNTYQCA-MGKQAIGHISLNVKKRFDSVILQLTYTHRPMVSTK 730

Query: 751  ISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHI 810
            I D +      +N      E+  GQNA+VAV  + GY+ ED+LV+N+ S+ERG+FR    
Sbjct: 731  ILDLIN-----YN------EIPAGQNAMVAVMSYSGYDIEDALVLNKTSVERGLFR---- 775

Query: 811  RSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKY 870
                 EV      + ++ S+ M +      K      LD+DG    G  ++ G + + K 
Sbjct: 776  ----VEVYKTTTTLLKKHSNGMSDVLWPNPK---ESVLDEDGLGKPGKMVRDGTVYVNKM 828

Query: 871  A--DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKG 928
            +  D     + K+   +   + K++++ + D      + LRQ R P +GDKFSS HGQKG
Sbjct: 829  SPVDGTYKFTGKVHRGDPAYIDKILITKSQDQVLIKTM-LRQTRVPEIGDKFSSRHGQKG 887

Query: 929  VLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKR 988
            V+G L  QE+ PF  QGIVPDI++NPH FPSR T G+++E   GK       G+  G   
Sbjct: 888  VVGLLVRQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKIVELISGKA------GVLEGQIL 941

Query: 989  YATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDK 1048
             +T F   SV+   E L + GFS  G +    G TG  + + IF GP FYQRL HM  DK
Sbjct: 942  DSTAFKENSVEQTCELLIKHGFSYSGKDCFTSGTTGAPLAAYIFFGPVFYQRLKHMVADK 1001

Query: 1049 VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHI 1108
            +  R  GP   LTRQP   R + GG+K GEMERDCLI +GA++ + ERL T SD ++ ++
Sbjct: 1002 IHMRARGPRAILTRQPTEGRSKDGGLKLGEMERDCLIGYGASSLITERLMTSSDVFEAYV 1061

Query: 1109 CRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
            CR C  +A             +G  C +   G    K  +PY  KLL QEL SM I  + 
Sbjct: 1062 CRSCGVLA------------FKG--CCVACKGTKPAKVKMPYACKLLFQELMSMNILPRL 1107

Query: 1169 DTE 1171
              E
Sbjct: 1108 HIE 1110


>gi|281338612|gb|EFB14196.1| hypothetical protein PANDA_017492 [Ailuropoda melanoleuca]
          Length = 1058

 Score =  474 bits (1219), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 350/1104 (31%), Positives = 522/1104 (47%), Gaps = 130/1104 (11%)

Query: 111  PRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIP 170
            P   RL++MTYS+ + V +++              T   Q I +  L        IGR+P
Sbjct: 24   PHECRLRDMTYSAPITVDIEY--------------TRGSQRIIRNALP-------IGRMP 62

Query: 171  VMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVS----N 220
            +M++S  C + G       +  +C  D GGYFI+KG EKV + QEQ+   R+ V      
Sbjct: 63   IMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRKG 122

Query: 221  SMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSD 280
            ++G +V   +  K++R      +M+    +K G   L    LS +IPI I+F A+GV SD
Sbjct: 123  AVGASVTSSTHEKKSR-----TNMA----VKQGRFYLRHNTLSEDIPIVIIFKAMGVESD 173

Query: 281  KEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTF----PPG 336
            +EIV +I     +  ++     S+ +   K   F +   ALKY+   ++        P  
Sbjct: 174  QEIVQMIG---TEEHVMAAFGPSLEEC-QKAQIFTQ-MQALKYIGNKVRRQRMWGGGPKK 228

Query: 337  ESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRR--------KCDNRDDFRNKR 388
               EE     L  S   T    +   +  KC+  A   RR        K D+RD + NKR
Sbjct: 229  TKIEEARE--LLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKR 286

Query: 389  LELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR-PIEYYLDASILTNGLSRAFST 447
            LELAG+LL    +         M K   + +   R  +  +  ++    +TNG+  A ST
Sbjct: 287  LELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAIST 346

Query: 448  GAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKIC 507
            G WS    + +R  G+   L R + +  L  + R   Q + T KV   R   PS WG +C
Sbjct: 347  GNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLC 405

Query: 508  FLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKL----ADDASYSLGGKFK 562
               TP+GE CGLVKNL +   ++T + + PI +   N G+E +     ++ SY     F 
Sbjct: 406  PSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYP--NVFL 463

Query: 563  VFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLV 622
            VF++G+ +GV +D    V+  R  RR   +   V I  +     V I  D GR+ RP ++
Sbjct: 464  VFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYII 523

Query: 623  VENMGK------IKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKK 676
            V+          ++ L      F+  L   ++E +   EE DC  A     + KD     
Sbjct: 524  VKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDT---- 579

Query: 677  PIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLS 736
                TH E++   LLG+  G+IP+ +H+ + R  YQ      QA+G    N   R+DTL 
Sbjct: 580  ----THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-AMGKQAMGTIGYNQRNRIDTLM 634

Query: 737  HQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMN 796
            + L YPQ+P+ +T   +           ++   +L  GQNA VAV  + GY+ ED+LV+N
Sbjct: 635  YLLAYPQKPMVKTKTIE-----------LIEFEKLPAGQNATVAVMSYSGYDIEDALVLN 683

Query: 797  RASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFI 856
            +ASL+RG  R    ++ K  +     Q   +    M++    +  I R + LD DG    
Sbjct: 684  KASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLD-AATRKPIWRHEILDADGICSP 742

Query: 857  GANLQSGDIVIGKYADSGA----------------DHSIKLKHTERGMVQKVVLSSNDDG 900
            G  +++  +++ K   +                  D  I  K      ++KV++SSN + 
Sbjct: 743  GEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAED 802

Query: 901  KNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSR 960
                 + LRQ R P +GDKFSS HGQKGV G +  QE+ PF   GI PDI++NPH FPSR
Sbjct: 803  AFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSR 862

Query: 961  QTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYD 1020
             T G+L+E   GK       G+  G   Y T F    V  + E L R G++  G + +  
Sbjct: 863  MTVGKLIELLAGKA------GVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTS 916

Query: 1021 GRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEME 1080
            G TGE + + I+ GP +YQ+L HM  DK+  R  GP   LTRQP   R R GG++ GEME
Sbjct: 917  GITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEME 976

Query: 1081 RDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSG 1140
            RDCLI +GA+  L ERL   SD++++ +C +C             G      +C  C S 
Sbjct: 977  RDCLIGYGASMLLLERLMISSDAFEVDVCGQC-------------GLLGYSGWCHYCKSS 1023

Query: 1141 DDIVKANVPYGAKLLCQELFSMGI 1164
              +    +PY  KLL QEL SM I
Sbjct: 1024 CHVSSLRIPYACKLLFQELQSMNI 1047


>gi|238908505|ref|NP_001154180.1| DNA-directed RNA polymerase III subunit RPC2 isoform 2 [Homo sapiens]
 gi|114646705|ref|XP_509335.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 4
            [Pan troglodytes]
 gi|332241690|ref|XP_003270011.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 2
            [Nomascus leucogenys]
 gi|395744769|ref|XP_003778157.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 2
            [Pongo abelii]
 gi|397525260|ref|XP_003832592.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 2
            [Pan paniscus]
          Length = 1075

 Score =  474 bits (1219), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 350/1104 (31%), Positives = 522/1104 (47%), Gaps = 130/1104 (11%)

Query: 111  PRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIP 170
            P   RL++MTYS+ + V +++              T   Q I +  L        IGR+P
Sbjct: 41   PHECRLRDMTYSAPITVDIEY--------------TRGSQRIIRNALP-------IGRMP 79

Query: 171  VMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVS----N 220
            +M++S  C + G       +  +C  D GGYFI+KG EKV + QEQ+   R+ V      
Sbjct: 80   IMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRKG 139

Query: 221  SMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSD 280
            ++G +V   +  K++R      +M+    +K G   L    LS +IPI I+F A+GV SD
Sbjct: 140  AVGASVTSSTHEKKSR-----TNMA----VKQGRFYLRHNTLSEDIPIVIIFKAMGVESD 190

Query: 281  KEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTF----PPG 336
            +EIV +I     +  ++     S+ +   K   F +   ALKY+   ++        P  
Sbjct: 191  QEIVQMIG---TEEHVMAAFGPSLEEC-QKAQIFTQ-MQALKYIGNKVRRQRMWGGGPKK 245

Query: 337  ESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRR--------KCDNRDDFRNKR 388
               EE     L  S   T    +   +  KC+  A   RR        K D+RD + NKR
Sbjct: 246  TKIEEARE--LLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKR 303

Query: 389  LELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR-PIEYYLDASILTNGLSRAFST 447
            LELAG+LL    +         M K   + +   R  +  +  ++    +TNG+  A ST
Sbjct: 304  LELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAIST 363

Query: 448  GAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKIC 507
            G WS    + +R  G+   L R + +  L  + R   Q + T KV   R   PS WG +C
Sbjct: 364  GNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLC 422

Query: 508  FLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKL----ADDASYSLGGKFK 562
               TP+GE CGLVKNL +   ++T + + PI +   N G+E +     ++ SY     F 
Sbjct: 423  PSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYP--NVFL 480

Query: 563  VFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLV 622
            VF++G+ +GV +D    V+  R  RR   +   V I  +     V I  D GR+ RP ++
Sbjct: 481  VFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYII 540

Query: 623  VENMGK------IKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKK 676
            V+          ++ L      F+  L   ++E +   EE DC  A     + KD     
Sbjct: 541  VKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDT---- 596

Query: 677  PIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLS 736
                TH E++   LLG+  G+IP+ +H+ + R  YQ      QA+G    N   R+DTL 
Sbjct: 597  ----THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-AMGKQAMGTIGYNQRNRIDTLM 651

Query: 737  HQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMN 796
            + L YPQ+P+ +T   +           ++   +L  GQNA VAV  + GY+ ED+LV+N
Sbjct: 652  YLLAYPQKPMVKTKTIE-----------LIEFEKLPAGQNATVAVMSYSGYDIEDALVLN 700

Query: 797  RASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFI 856
            +ASL+RG  R    ++ K  +     Q   +    M++    +  I R + LD DG    
Sbjct: 701  KASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLD-AATRKPIWRHEILDADGICSP 759

Query: 857  GANLQSGDIVIGKYADSGA----------------DHSIKLKHTERGMVQKVVLSSNDDG 900
            G  +++  +++ K   +                  D  I  K      ++KV++SSN + 
Sbjct: 760  GEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAED 819

Query: 901  KNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSR 960
                 + LRQ R P +GDKFSS HGQKGV G +  QE+ PF   GI PDI++NPH FPSR
Sbjct: 820  AFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSR 879

Query: 961  QTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYD 1020
             T G+L+E   GK       G+  G   Y T F    V  + E L R G++  G + +  
Sbjct: 880  MTVGKLIELLAGKA------GVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTS 933

Query: 1021 GRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEME 1080
            G TGE + + I+ GP +YQ+L HM  DK+  R  GP   LTRQP   R R GG++ GEME
Sbjct: 934  GITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEME 993

Query: 1081 RDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSG 1140
            RDCLI +GA+  L ERL   SD++++ +C +C             G      +C  C S 
Sbjct: 994  RDCLIGYGASMLLLERLMISSDAFEVDVCGQC-------------GLLGYSGWCHYCKSS 1040

Query: 1141 DDIVKANVPYGAKLLCQELFSMGI 1164
              +    +PY  KLL QEL SM I
Sbjct: 1041 CHVSSLRIPYACKLLFQELQSMNI 1064


>gi|193784141|dbj|BAG53685.1| unnamed protein product [Homo sapiens]
          Length = 1075

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 350/1104 (31%), Positives = 522/1104 (47%), Gaps = 130/1104 (11%)

Query: 111  PRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIP 170
            P   RL++MTYS+ + V +++              T   Q I +  L        IGR+P
Sbjct: 41   PHECRLRDMTYSAPITVDIEY--------------TRGSQRIIRNALP-------IGRMP 79

Query: 171  VMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVS----N 220
            +M++S  C + G       +  +C  D GGYFI+KG EKV + QEQ+   R+ V      
Sbjct: 80   IMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRKG 139

Query: 221  SMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSD 280
            ++G +V   +  K++R      +M+    +K G   L    LS +IPI I+F A+GV SD
Sbjct: 140  AVGASVTSSTHEKKSR-----TNMA----VKQGRFYLRHNTLSEDIPIVIIFKAMGVESD 190

Query: 281  KEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTF----PPG 336
            +EIV +I     +  ++     S+ +   K   F +   ALKY+   ++        P  
Sbjct: 191  QEIVQMIG---TEEHVMAAFGPSLEEC-QKAQIFTQ-MQALKYIGNKVRRQRMWGGGPKK 245

Query: 337  ESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRR--------KCDNRDDFRNKR 388
               EE     L  S   T    +   +  KC+  A   RR        K D+RD + NKR
Sbjct: 246  TKIEEARE--LLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKR 303

Query: 389  LELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR-PIEYYLDASILTNGLSRAFST 447
            LELAG+LL    +         M K   + +   R  +  +  ++    +TNG+  A ST
Sbjct: 304  LELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAIST 363

Query: 448  GAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKIC 507
            G WS    + +R  G+   L R + +  L  + R   Q + T KV   R   PS WG +C
Sbjct: 364  GNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLC 422

Query: 508  FLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKL----ADDASYSLGGKFK 562
               TP+GE CGLVKNL +   ++T + + PI +   N G+E +     ++ SY     F 
Sbjct: 423  PSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYP--NVFL 480

Query: 563  VFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLV 622
            VF++G+ +GV +D    V+  R  RR   +   V I  +     V I  D GR+ RP ++
Sbjct: 481  VFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYII 540

Query: 623  VENMGK------IKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKK 676
            V+          ++ L      F+  L   ++E +   EE DC  A     + KD     
Sbjct: 541  VKKQKPAVINKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDT---- 596

Query: 677  PIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLS 736
                TH E++   LLG+  G+IP+ +H+ + R  YQ      QA+G    N   R+DTL 
Sbjct: 597  ----THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-AMGKQAMGTIGYNQRNRIDTLM 651

Query: 737  HQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMN 796
            + L YPQ+P+ +T   +           ++   +L  GQNA VAV  + GY+ ED+LV+N
Sbjct: 652  YLLAYPQKPMVKTKTIE-----------LIEFEKLPAGQNATVAVMSYSGYDIEDALVLN 700

Query: 797  RASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFI 856
            +ASL+RG  R    ++ K  +     Q   +    M++    +  I R + LD DG    
Sbjct: 701  KASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLD-AATRKPIWRHEILDADGICSP 759

Query: 857  GANLQSGDIVIGKYADSGA----------------DHSIKLKHTERGMVQKVVLSSNDDG 900
            G  +++  +++ K   +                  D  I  K      ++KV++SSN + 
Sbjct: 760  GEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAED 819

Query: 901  KNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSR 960
                 + LRQ R P +GDKFSS HGQKGV G +  QE+ PF   GI PDI++NPH FPSR
Sbjct: 820  AFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSR 879

Query: 961  QTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYD 1020
             T G+L+E   GK       G+  G   Y T F    V  + E L R G++  G + +  
Sbjct: 880  MTVGKLIELLAGKA------GVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTS 933

Query: 1021 GRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEME 1080
            G TGE + + I+ GP +YQ+L HM  DK+  R  GP   LTRQP   R R GG++ GEME
Sbjct: 934  GITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEME 993

Query: 1081 RDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSG 1140
            RDCLI +GA+  L ERL   SD++++ +C +C             G      +C  C S 
Sbjct: 994  RDCLIGYGASMLLLERLMISSDAFEVDVCGQC-------------GLLGYSGWCHYCKSS 1040

Query: 1141 DDIVKANVPYGAKLLCQELFSMGI 1164
              +    +PY  KLL QEL SM I
Sbjct: 1041 CHVSSLRIPYACKLLFQELQSMNI 1064


>gi|58271124|ref|XP_572718.1| DNA-directed RNA polymerase [Cryptococcus neoformans var. neoformans
            JEC21]
 gi|134114572|ref|XP_773994.1| hypothetical protein CNBH0410 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50256624|gb|EAL19347.1| hypothetical protein CNBH0410 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|57228977|gb|AAW45411.1| DNA-directed RNA polymerase, putative [Cryptococcus neoformans var.
            neoformans JEC21]
          Length = 1129

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 370/1192 (31%), Positives = 549/1192 (46%), Gaps = 147/1192 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQK--AFDSFGETIVEPGYDPSKKGEGEWRYASMRFG 89
            +F    GLV   ++S+N F+   ++   A +S   + + P Y          RY  +R G
Sbjct: 30   AFLKVKGLVKQHLDSFNYFVNVDIKAILAANSLVISDINPKY--------YIRYTDIRVG 81

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
            +      +  A        + P   RL + TYS+ + V V++               G E
Sbjct: 82   RPARHDANQVASA------LSPMECRLTDSTYSAPIYVDVEYM--------------GEE 121

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
            +  ++         + IG +PVM++SDLC +KG         G+C  D GGYF++KG EK
Sbjct: 122  KRSKQR-------GVQIGMLPVMLRSDLCNLKGKNEAELARMGECPMDPGGYFVVKGTEK 174

Query: 204  VFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLS 263
            V + QEQ+   R+ V       V  +  +  +  +V+   +SK   +      L      
Sbjct: 175  VILVQEQLSKNRILVMKDKKDEVMAEVTSSTHDRVVKTYVVSKANRL-----YLRHNSFK 229

Query: 264  TEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKY 323
              IPI I   A+G+++DKEI+ LI   C         F    +   K   F + R AL++
Sbjct: 230  EFIPIVIALKAMGLTADKEILQLI---CGSDERYQEAFGVSLEEAAKEKTFTR-RQALEW 285

Query: 324  VDKLIKGTTFPPGESTEEC-MNTYLFPSLHGTKQKA---------RFLGYMVKCLLQAYS 373
            +     G    P ++ ++   N  L PS    +  A         R + +  KC+  A  
Sbjct: 286  I-----GARVSPNQAKDDSGSNQKLTPSDIAQQALAAMVLGHVPVRNMNFRPKCIYLATM 340

Query: 374  GRR---------KCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLY 420
             RR           D+RD   NKRLELAG+LL    E   K   +  +KRM K L++   
Sbjct: 341  ARRVLMAMIDDHMVDDRDYVGNKRLELAGQLLSLLFEDSFKTFNSELKKRMDKILEKPNR 400

Query: 421  GDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLR 480
                            +T    R+ STG WS      ER +G+   L R + +  L  + 
Sbjct: 401  AGPFDAGTLIRQGGDPITQAFVRSISTGNWSLKRFHVER-AGVTHVLSRLSFIAALGMMT 459

Query: 481  RTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFE 539
            R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + E P+ +
Sbjct: 460  RISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVPETPLVK 519

Query: 540  QLFNSGMEKLADDASYSL--GGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVE 597
              F  G+E ++      L   G   V V+G  IGV   +  FV + R+ RR   +   V 
Sbjct: 520  MAFMLGVEDISLVTGNELYRPGVHMVQVNGTLIGVTNMAKRFVRQFRKLRRAGRMSEFVS 579

Query: 598  IKRDELQSEVRIFMDAGRILRPLLVVE------NMGKIKSLEGKNYTFQALLDHGIIELV 651
            I  +     + I  D GRI RP+++VE          ++ L+    TF   L  G++E +
Sbjct: 580  IFINHHHKIIYIASDGGRICRPMIIVEKGRSRVTTEHVRLLKEGKVTFDHFLRAGLVEYL 639

Query: 652  GTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLY 711
               EE D   A        +IE+      TH E++   +LG   G+IP+ +H+ + R  Y
Sbjct: 640  DVNEENDSFIAC----YENEIEEGT----THLEIEPFTILGAVAGLIPYPHHNQSPRNTY 691

Query: 712  QSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPEL 771
            Q      QAIG    N   R+DTL + + YPQ+P+ +T   + +G     +N      +L
Sbjct: 692  QC-AMGKQAIGAIAYNQLNRIDTLLYLMTYPQQPMVKTKTIELIG-----YN------KL 739

Query: 772  YNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDD 831
              GQNA VAV  + GY+ ED+L++NRAS++RG  R   ++          M+     S +
Sbjct: 740  PAGQNATVAVMSYSGYDIEDALILNRASVDRGFGRCHVLKKV-----TTPMRTFHNGSHE 794

Query: 832  MVNFGKIQSKIGRVDSLDD-DGFPFIGANLQSGDIVI---------GKYADSGADHSIKL 881
               +     +      +D  DG    GA +   D++I         G  AD+     + +
Sbjct: 795  RTAYPDPPPRPDAYTFVDKADGMTAPGATINQYDVMIHRETPVDTRGGGADTQLYKPMPV 854

Query: 882  KH--TERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENF 939
             H   E  +V KV+L+  +DG    +++ RQ R P LGDKFSS HGQKGV G +  Q + 
Sbjct: 855  THKTPEPILVDKVMLTEGEDGALIKILT-RQTRRPELGDKFSSRHGQKGVCGLIVPQADM 913

Query: 940  PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVD 999
            PF  QGIVPDI++NPH FPSR T G+++E   GK       G+ +G  +Y T F    V 
Sbjct: 914  PFNDQGIVPDIIMNPHGFPSRMTVGKMIELLSGKA------GVVAGKLQYGTAFGGSKVV 967

Query: 1000 AITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHP 1059
             +++ L   GFS  G + L  G TG+ + + ++ GP +YQ+L HM  DK+  R TGP   
Sbjct: 968  DMSQILIDNGFSYGGKDMLTSGITGQPMEAYVYFGPIYYQKLKHMVMDKMHARPTGPRAN 1027

Query: 1060 LTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVI 1119
            LTRQP   R + GG++ GEMERDCLI +GA   L ERL   SD+++  +C  C       
Sbjct: 1028 LTRQPTEGRSKDGGLRLGEMERDCLIGYGATQLLLERLMISSDAFETQVCESC------- 1080

Query: 1120 QRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                  G      +C  C SG  +V   +PY AKLL QEL  M I  K   E
Sbjct: 1081 ------GMLGYNNWCPKCKSGKGVVGLTIPYAAKLLIQELMGMNIMPKLCLE 1126


>gi|389743088|gb|EIM84273.1| beta and beta-prime subunits of DNA dependent RNA-polymerase [Stereum
            hirsutum FP-91666 SS1]
          Length = 1141

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 359/1194 (30%), Positives = 551/1194 (46%), Gaps = 153/1194 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETI--VEPGYDPSKKGEGEW-RYASMRF 88
            +F    GLV   I+S+N F+   ++    +  +    V+P +         W +Y  +R 
Sbjct: 39   AFLKVKGLVKQHIDSFNYFVDVDIKNILKANNKVTSDVDPRF---------WLKYTDIRV 89

Query: 89   GQVTLDKPSFFAGNGGDEHD--MFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKT 146
            G        F      D  D  + P   RL++ TYS+ + V +Q+              T
Sbjct: 90   G--------FPDRTDADAIDKSVTPNECRLRDTTYSAPIVVTIQY--------------T 127

Query: 147  GREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG------DCDFDHGGYFIIKG 200
              +  +++        N+ IGR+P+M++S+ C + G  +       +C  D GGYF++KG
Sbjct: 128  RGKNVVRRP-------NVNIGRLPIMLRSNKCVLTGRSEAQLARMIECPLDPGGYFVVKG 180

Query: 201  AEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVY 260
             EKV + QEQ+   R+ V       V   S        ++      +   K G+  L   
Sbjct: 181  TEKVILVQEQLSKNRIIVETDPVKGVVQASCTSSTHGGLK---SKTYVATKKGKIYLRHN 237

Query: 261  FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNA 320
             +  ++PI I   ALG+ SDKEI+ L   T  +       FA   +   +   F +   A
Sbjct: 238  SIHEDVPIVIALKALGIQSDKEILLL---TAGNSEAYKDSFAPNLEDAARLGIFTR-HQA 293

Query: 321  LKYV------DKLIKGTTFPPGESTEECMNTYLFPSLHGT----KQKARFLGYMVKCLLQ 370
            L+++      ++ I G   P  E   E + T +   +       + KA F+  M + +L 
Sbjct: 294  LEWIGSRVKINRRIVGVRRPAWEEALEALATIVLAHVPVVGMDFRSKAIFVATMTRRVLM 353

Query: 371  AYSGRRKCDNRDDFRNKRLELAGELL-----------ERELKVHIAHARKRMAKALQRDL 419
            A    +  D+RD   NKRLELAG+LL              LK  I    K+ ++  + D 
Sbjct: 354  AVKDEKMVDDRDYVGNKRLELAGQLLALLFEDLFKTFNTNLKSSIDKVLKKPSRTTEFDA 413

Query: 420  YGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDL 479
            +       +++  D   +T+G  RA STG WS    R +R +G+   L R + +  L  +
Sbjct: 414  FNT-----MQFQGDH--ITSGFVRAISTGNWSLKRFRMDR-AGVTHVLSRLSFISALGMM 465

Query: 480  RRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-LEPIF 538
             R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T +  EPI 
Sbjct: 466  TRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVDEEPII 525

Query: 539  EQLFNSGMEKLADDASYSLGG--KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQV 596
            +  +  G+E +       + G   F V V+G  IG+ +    FV   RR RR   +   V
Sbjct: 526  KVAYMLGVENIGQSTGTEIYGPNTFVVNVNGTIIGLTRFPTRFVHNFRRLRRAGRVSEFV 585

Query: 597  EIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIEL 650
             +  +     V I  D GRI RP+++V+N         +  L+     F   L  G++E 
Sbjct: 586  SVYINHHHHTVNIASDGGRICRPMIIVDNGRPMVTSEHVSLLKKAKLEFDDFLRQGLVEY 645

Query: 651  VGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVL 710
            +   EE D        Y+     D  P   TH E++   LLG   G+IP+ +H+ + R  
Sbjct: 646  LDVNEENDS-------YIALYEPDIVPTT-THLEIEPFTLLGAVAGLIPYPHHNQSPRNT 697

Query: 711  YQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPE 770
            YQ      QAIG    N   R+DTL +   YPQ+P+ +T   + +G             +
Sbjct: 698  YQC-AMGKQAIGAIGYNQLNRIDTLLYLSVYPQQPMVKTKTIELVG-----------YDK 745

Query: 771  LYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSD 830
            L  GQNA VAV  + GY+ ED+L++N+AS++RG  R + +R     +         R +D
Sbjct: 746  LPAGQNATVAVMSYSGYDIEDALILNKASVDRGYGRCQVLRKNATLIRKYPNGTFDRLAD 805

Query: 831  DMVNF-GKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHS----------- 878
               +  G +Q K    D +  DG   +G  +  GD+ + K   + A+ +           
Sbjct: 806  APTDEEGNVQKK---YDIVQLDGLAGVGERVDPGDVYVNKQTPTNANDNTFTGQAASVPY 862

Query: 879  ----IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLE 934
                +  K    G V K+++S  ++ +    V +RQ R P LGDKFSS HGQKGV G + 
Sbjct: 863  KNAPMTYKSPVAGHVDKIMISDTENDQTLIKVLIRQTRRPELGDKFSSRHGQKGVCGLIV 922

Query: 935  SQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFA 994
            +QE+ PF  QGIVPD ++NPH FPSR T G+++E   GK       G+ +G  +Y T F 
Sbjct: 923  NQEDMPFNDQGIVPDTIMNPHGFPSRMTVGKMIELLAGKA------GVLAGKLQYGTAFG 976

Query: 995  TPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNT 1054
               V+ ++  L   GFS  G + L  G TGE + + ++ GP +YQ + HM  DK+  R  
Sbjct: 977  GSKVEDMSRILIENGFSYAGKDMLTSGITGEPMEAYVYFGPIYYQ-VKHMVMDKMHARAR 1035

Query: 1055 GPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKN 1114
            GP   LTRQP   R R GG++ GEMERDCLI +GA   L ERL   SD ++++ C++C  
Sbjct: 1036 GPRATLTRQPTEGRSREGGLRLGEMERDCLIGYGATQLLLERLMISSDKFEVNACQEC-- 1093

Query: 1115 VANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
                       G      +C  C S   + +  +PY AKLL QEL +M +  + 
Sbjct: 1094 -----------GLLGYNGWCTYCKSSKKMAQLTIPYAAKLLFQELMAMNVVPRL 1136


>gi|320593507|gb|EFX05916.1| DNA-directed RNA polymerase beta [Grosmannia clavigera kw1407]
          Length = 1165

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 390/1247 (31%), Positives = 569/1247 (45%), Gaps = 188/1247 (15%)

Query: 8    FTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETI- 66
             TDP S  D   + L  F +          GLV   I+SYN F++  + K   +   TI 
Sbjct: 21   LTDPISTKDDKYQLLPAFLKVK--------GLVKQHIDSYNFFVEQEI-KDIVTANRTIR 71

Query: 67   --VEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSR 124
              V+ G+           +  +R G+ T    S    +   ++++ P   RL++MTY++ 
Sbjct: 72   SDVQSGF--------YLEFTDIRVGRPTRTDFS----DIKSQNEVTPMECRLRDMTYAAP 119

Query: 125  MKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVE 184
            + V + +        T DK +  R              NI +GR+PVM+KS  C + G  
Sbjct: 120  IVVDIAY--------TRDKKRIIRR-------------NITLGRMPVMLKSSKCCLSGAT 158

Query: 185  KG------DCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNS-----MGWTVAYKSENK 233
                    +C  D GGYFI+ G EKV + QEQ+   R+ V +      +  +V   +  +
Sbjct: 159  NSQMEVMNECPLDPGGYFIVNGTEKVILIQEQLSKNRVIVESEEKNGVISASVTSSTHER 218

Query: 234  RNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLI---DFT 290
            +++  V L    K E I      L    L   IPI I+  A G  +D EI+ L+   D  
Sbjct: 219  KSKTYVTL----KKERI-----ALQHNVLVDNIPIVIVLKAFGGLTDYEIMQLVAGSDGR 269

Query: 291  CEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTT------------------ 332
             +D   +N       D   K   F + + AL+YV   +K  T                  
Sbjct: 270  YQDDFAINF------DEAAKMGVFTQ-QQALEYVGARVKMGTRNGGGPGGGPGGMRPMGP 322

Query: 333  FPPGESTEECMNTY--------------LFPSLHGTKQKARFLGYMVKCLLQAYSGRRKC 378
                 + EE ++                 FP       KA ++  M + +L A    +  
Sbjct: 323  PTKRNNVEEGLDALANIIIAHVPIDGLDFFP-------KAVYVAMMARRVLMAMHNPQLV 375

Query: 379  DNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDA 434
            D+RD   NKRLELAG+LL    E   K   +  R  + K  ++   G             
Sbjct: 376  DDRDFVGNKRLELAGQLLSLLFEDLFKKFQSDLRFNIDKFFKKPHQGVAFDPLTSISATG 435

Query: 435  SILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGD 494
              ++ G++RA  TG WS       R  G+   L R + +  L  + R   Q + T KV  
Sbjct: 436  HHISQGMNRAIQTGNWSVKRFGMNR-GGVTHVLSRLSYISALGMMTRISSQFEKTRKVSG 494

Query: 495  ARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLF--NSGMEKLAD 551
             R   PS WG +C   TP+GE CGLVKNL +   ++T + E P+   +F  +  +E L +
Sbjct: 495  PRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTHVEEGPVRAWVFSLDDSVEPLRN 554

Query: 552  --DASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRI 609
               A     G + V V+G    +  +   F +  R  RRR  +   V I  +   + V I
Sbjct: 555  FSGAEMHRAGWYVVHVNGTPYALTPNPRRFCARFRTMRRRGWISPFVSININSHFASVHI 614

Query: 610  FMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAW 663
              D GRI RP ++V+N         ++ L+    TF   L  G+IE +   EE+D   A 
Sbjct: 615  ATDEGRICRPYIIVKNGQSRLRAEHLRLLQQGRVTFDDFLRRGVIEYLDVNEEQDALVAL 674

Query: 664  GIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGF 723
                     E       TH E++   +LG   G+IPF +H+ + R  YQ      QAIG 
Sbjct: 675  --------YEADCTAASTHMEIEPFTILGAVAGLIPFPHHNQSPRNTYQCAM-GKQAIGA 725

Query: 724  PTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNV 783
               N   R+DTL + L YPQRP+  T   + +      H   LP      GQNA V V  
Sbjct: 726  IAYNQFHRIDTLLYTLVYPQRPMVATKTIELV------HYDKLP-----AGQNATVVVMS 774

Query: 784  HLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDN-KEMQVKRRSSDDMVNFGKIQSKI 842
            + GY+ ED+LV+N+AS++RG  R +  R Y AE+      + +R    +    G+   KI
Sbjct: 775  YSGYDIEDALVLNKASIDRGYGRCQVFRKYVAEMQRFPNGRTERVGGPERDKDGE---KI 831

Query: 843  GRVDSLDDDGFPFIGANLQSGDIVIGKY-----------ADSGA----DHSIKLKHTERG 887
             +  ++D+DG   +G  +Q GD++I K            AD G+    D S+  +  +  
Sbjct: 832  SKHAAIDNDGLAAVGWRVQHGDVMIKKESPVDLTTTGIGADRGSNEYRDSSLTYRINDPS 891

Query: 888  MVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIV 947
             V KV++S  +       V  RQ R P +GDKFSS HGQKGV+G +  QE+ PF   G+V
Sbjct: 892  YVDKVMVSQTEKDTLIFKVQTRQTRRPEIGDKFSSRHGQKGVVGIIVEQEDMPFADSGLV 951

Query: 948  PDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHR 1007
            PDI++NPH +PSR T G+L E   GK     G+        Y   F +  V+A+ E+L R
Sbjct: 952  PDIIMNPHGYPSRMTVGKLFECLTGKASVVAGRRDYG----YGDAFRSHPVEAMGEELVR 1007

Query: 1008 AGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVAD 1067
             GFS  G +    G TGE + + IF GP +YQRL HM +DK+  R  GP   LTRQP   
Sbjct: 1008 HGFSWAGKDCFTSGTTGEPMEAHIFNGPIYYQRLKHMVQDKMHSRAKGPRAILTRQPTEG 1067

Query: 1068 RKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGR 1127
            R R GG++ GEMERDCLIA+GA+  L ERL   SD+  + +C+ C            G  
Sbjct: 1068 RSRDGGLRLGEMERDCLIAYGASQLLLERLMFSSDATSLDLCQHC------------GLF 1115

Query: 1128 KVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSM--GITLKFDTEF 1172
              +G YC+ C S  D+ +  +PY AKLL QEL SM  G+ L+ + EF
Sbjct: 1116 GYKG-YCQTCRSTRDVTQMTMPYAAKLLVQELISMNVGVRLQLEDEF 1161


>gi|183232813|ref|XP_654890.2| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide
            [Entamoeba histolytica HM-1:IMSS]
 gi|169801863|gb|EAL49502.2| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
            putative [Entamoeba histolytica HM-1:IMSS]
          Length = 1122

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 355/1175 (30%), Positives = 560/1175 (47%), Gaps = 130/1175 (11%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+S+N FI   +++   +  +   +   DP        R+  +++  V
Sbjct: 29   AFVKARGLVRQHIDSFNYFIDEEIKQIVKANDKITCDA--DP--------RFY-LKYLDV 77

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             +D P         +  + P+  RL++++Y++ +   +Q+                R+  
Sbjct: 78   KVDTPCVEVDY--KKESITPQECRLRDISYTAPILANIQYT---------------RDNK 120

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
            I ++ ++       IG +P+M++S  C +        +  G+C  D GGYFI+KG E+V 
Sbjct: 121  IFRKTVT-------IGYMPIMLQSKHCVLYNNTFEEFIRHGECPMDPGGYFIVKGVERVI 173

Query: 206  VAQEQICLKRLWVSNS----MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYF 261
            ++QEQ+   R+ +  +    +  +V   +   ++R +V L         K G+  L    
Sbjct: 174  LSQEQMSKNRILIETTTQGFLSASVTSATHEVKSRTVVYL---------KKGKLYLKHNS 224

Query: 262  LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNAL 321
            L+ ++PI I+  A+G+ SD E +  +        I +I      D  N+ +  R   N L
Sbjct: 225  LTEDLPIMIVIKAMGMESDMEFLQFVGNHYTSKMINSIEECKAKDVLNQREALRYIGNHL 284

Query: 322  K-YVDKLIKGTTFPPGESTEECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRR 376
            K Y  +    +  P  E   + +   + P +    +  K K  ++  MV  +L+A     
Sbjct: 285  KIYTGQKGYISKRPKIEEARDVLANLVLPHIEVNRYNFKTKIIYIALMVNWILKA-DETG 343

Query: 377  KCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYY--LDA 434
            + D++D + NKR+ELAG+L+    +         +  A  + L         +    +  
Sbjct: 344  ELDDKDYYGNKRMELAGQLMSLLFEDLFKQFNTDLQNAANKGLTKKSRSETFDIIKCISP 403

Query: 435  SILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGD 494
              +T GL  + STG W       +R +GI   L R + +  L  + R     + T KV  
Sbjct: 404  HRITQGLIHSLSTGNWVLKRFNMDR-AGITQVLSRLSYISALGMMTRLNSHFEKTRKVSG 462

Query: 495  ARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGME--KLAD 551
             R    S WG +C   TP+GE+CGLVKN  +   V+T S  E I   LFN G+E   L  
Sbjct: 463  PRSLQGSQWGMVCPSDTPEGESCGLVKNFSLLTEVTTDSNDEAIVTMLFNLGVEDANLIS 522

Query: 552  DASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFM 611
                +    + VF++G  +G+ ++ + F+ + R  RR   L  +V +  +E+Q  + I  
Sbjct: 523  GDEVNAPSSYLVFLNGQLLGIHQNPIHFLKQCRLLRRHGRLGKKVSLHLNEMQRSINISS 582

Query: 612  DAGRILRPLLVVENM-GKIKSLEGKNY-----TFQALLDHGIIELVGTEEEEDCCTAWGI 665
            D GR+ RPL+VVEN   KI   E ++      + +  L  G+IE +   EE +   A   
Sbjct: 583  DGGRVCRPLIVVENCKSKIGPKEIRDIVEGFKSIEDCLKEGLIEYLDVNEENNSYIAIN- 641

Query: 666  KYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPT 725
                   E++     TH E+D   +LG+  G+IP+ +H+ + R  YQ      QAIG   
Sbjct: 642  -------ENEINEHTTHLEIDPLSILGVVAGLIPYPHHNQSPRNTYQCA-MGKQAIGTIG 693

Query: 726  TNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHL 785
             N   RVDTL + L+YPQ P+ +T   D           ++   +L  GQNA+VAV  + 
Sbjct: 694  YNQFKRVDTLLYLLYYPQIPMVKTKTID-----------MINFDKLPAGQNAMVAVMSYS 742

Query: 786  GYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRV 845
            GY+ ED+ ++N+AS++RG  R    R  KAE   K  + K  + D +V     + ++ + 
Sbjct: 743  GYDIEDASILNKASIDRGYGRCFVYR--KAECVIK--KYKNGACDRVVCPTDEERELPKY 798

Query: 846  DSLDDDGFPFIGANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQ 890
             SLD DG    G+ L  G I + K                 D      +  K      V 
Sbjct: 799  KSLDFDGVCSPGSILNPGSIYLNKQVPLNTIGTLTTDTIKDDEYRREVLTYKGPVPSYVD 858

Query: 891  KVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDI 950
            +V+++SN++      +SLR  R P LGDKFSS HGQKGV G + +QE+ PFT  GI PD+
Sbjct: 859  QVLITSNEEEPLKVKISLRTSRRPELGDKFSSRHGQKGVTGLIVNQEDMPFTNTGICPDV 918

Query: 951  VINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGF 1010
            ++NPH FPSR T G+LLE   GK       G+  G  +Y T F    +D +++ L  AG+
Sbjct: 919  IMNPHGFPSRMTVGKLLELVSGKA------GLMDGSFKYGTAFGGDKLDDMSKILIEAGY 972

Query: 1011 SKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKR 1070
            S  G E LY G TG+ + + IFIGP +YQ+L HM  DK+  R  GP   LTRQP   R R
Sbjct: 973  SYDGKEELYSGITGKALHAYIFIGPVYYQKLKHMVLDKMHARARGPKSSLTRQPTEGRSR 1032

Query: 1071 FGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVR 1130
             GG++ GEMERDCLI +GA   L ERL   SD++++ +C+KC  + +             
Sbjct: 1033 DGGLRLGEMERDCLIGYGATNLLLERLMYSSDAFKVCVCKKCGLIGH------------- 1079

Query: 1131 GPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
              YC+ C+S        +PY  KLL QE+ SM + 
Sbjct: 1080 SGYCKFCESSLYCTNVTMPYACKLLFQEMQSMNVV 1114


>gi|121703239|ref|XP_001269884.1| DNA-directed rna polymerase III subunit [Aspergillus clavatus NRRL 1]
 gi|119398027|gb|EAW08458.1| DNA-directed rna polymerase III subunit [Aspergillus clavatus NRRL 1]
          Length = 1246

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 363/1212 (29%), Positives = 568/1212 (46%), Gaps = 173/1212 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN FI+  L+K  +S   TI         + + +  +  ++F  +
Sbjct: 131  AFLKVKGLVKQHIDSYNYFIEVQLKKIVES-SSTI---------RSDIDHNFY-IKFTDI 179

Query: 92   TLDKPSFFAGNGGDEHDMFP-----RHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKT 146
             +  P           D FP        RL++ TY++ + V  ++               
Sbjct: 180  YVGSPCRADEPQDASLDAFPSSVSPHECRLRDTTYAAPILVDFEY-------------IR 226

Query: 147  GREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKG 200
            GR++ I++         + IGR+P+M++S  C +      +      C  D GGYFI+ G
Sbjct: 227  GRQRVIRR--------GVSIGRMPIMLRSSKCVLANKTPSEMTVLNECPLDPGGYFIVNG 278

Query: 201  AEKVFVAQEQICLKRLWVSNS-----MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEK 255
             EKV + QEQ+   R+ V        +  +V   S  ++++  + L         K  + 
Sbjct: 279  TEKVILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSKSYIIL---------KKDKL 329

Query: 256  VLSVYFLSTEIPIWILFFALGVSSDKEIVNLI---------DFTC--EDCSILNILFASI 304
             +    L+ +IPI IL  A+G+ +++E++ L+         DF    ED   L I +   
Sbjct: 330  YVKHNVLNEDIPIVILLRAMGIHTEQEMLLLVAGVDSLYQDDFAINFEDSIKLGI-YTQQ 388

Query: 305  HDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYM 364
               D      +  R  + Y    I+       E+    + +++       + KA ++ +M
Sbjct: 389  QALDWIGARIKINRKQMSYRRTHIQEAV----EAIASVIISHIEVKNMNFRPKAVYVAHM 444

Query: 365  VKCLLQAYSGRRKCDNRDDFRNKRLELAGELLER-----------ELKVHIAHARKRMAK 413
             + +L A +     D+RD   NKRLELAG+LL             ++K++I     +  +
Sbjct: 445  ARRVLMAKNDPSLVDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDIKMNIDKVLNKRNR 504

Query: 414  ALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPL 473
            A   D +   +       +  + +T G++RA STG WS    R ER +G+   L R + +
Sbjct: 505  AEAFDAWSVMS-------MHGNHITQGMNRAISTGNWSLKRFRMER-AGVTHVLSRLSYI 556

Query: 474  QTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI 533
              L  + R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL +   ++T+ 
Sbjct: 557  AALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCPADTPEGEACGLVKNLALMTHITTND 616

Query: 534  LE-PIFEQLFNSGMEKLADDASYSLGGK-------FKVFVDGDWIGVCKDSLSFVSELRR 585
             E PI   +F  G E +      +LGGK       + + ++G  I + +    F++  RR
Sbjct: 617  EEGPIKNLVFMLGAEDI-----LALGGKQLYTPGSYTISINGTPIALTRRPKFFLNAFRR 671

Query: 586  KRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYT 638
             RR   +   V I  +  Q  V I  D GRI RPL+VVEN GK       ++ L      
Sbjct: 672  LRRMGRISEFVSIYINHHQCAVHIATDDGRICRPLIVVEN-GKSLVTGEHLEKLRDGTMQ 730

Query: 639  FQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGII 698
            F   L  G++E +   EE D         L+   ED+     TH E++   +LG   G+I
Sbjct: 731  FDDFLAQGLVEYLDVNEENDS--------LIAIYEDRITDTTTHLEIEPFTVLGAVAGLI 782

Query: 699  PFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKP 758
            P+ +H+ + R  YQ      QAIG   +N  +R+D++ + + YPQ+P+ ++   +     
Sbjct: 783  PYPHHNQSPRNTYQCAM-GKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIE----- 836

Query: 759  GYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVD 818
                  +    +L  GQNA+VAV  + GY+ ED+LV+N+ S++RG  R +  R Y   + 
Sbjct: 837  ------LTKYDQLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYVTNLK 890

Query: 819  NKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADS----- 873
            +     K R +      G   + I +   L+ DG   +G  + +G++ I K         
Sbjct: 891  SYSNGTKDRLNPPTYENG---APIRKHALLESDGLAAVGEQVNAGEVYINKSTPDQSHMS 947

Query: 874  --GADHSIKLKHTERGM---------VQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSS 922
              G+D    +++T   M         + KV+ S  ++      V +RQ R P +GDKFSS
Sbjct: 948  GIGSDAGRPIQYTPTPMTYKLHDPAYIDKVMYSVQENENQLVKVLVRQTRRPEVGDKFSS 1007

Query: 923  MHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGI 982
             HGQKGV+G +  Q + PFT  GI PDI++NPH FPSR T G++LE   GK       G+
Sbjct: 1008 RHGQKGVVGIIADQADMPFTDLGINPDIIMNPHGFPSRMTVGKMLELVAGKA------GV 1061

Query: 983  CSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLI 1042
             +G   Y T F    V+  +  L   GF+  G E L  G TGE +   +F GP +YQ+L 
Sbjct: 1062 LAGHHGYGTCFGGTPVEETSRTLIAHGFNYGGKEYLTSGITGEALPFYVFTGPIYYQKLK 1121

Query: 1043 HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSD 1102
            HM +DK+  R  GP   LTRQP   R R GG++ GEMERDCLIA+G +  L ERL   SD
Sbjct: 1122 HMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSD 1181

Query: 1103 SYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSM 1162
             +++ +C +C  +  +              +C+ C S   +VK  +PY AKLL QEL SM
Sbjct: 1182 RHEIDVCEQCGFMGYL-------------NWCQRCKSSRSVVKMTIPYAAKLLIQELMSM 1228

Query: 1163 GIT--LKFDTEF 1172
             +T  LK D EF
Sbjct: 1229 NVTARLKLDDEF 1240


>gi|89274896|gb|ABD65889.1| RNA polymerase II second largest subunit, partial [Phaeolus
            schweinitzii]
          Length = 887

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 298/872 (34%), Positives = 456/872 (52%), Gaps = 92/872 (10%)

Query: 258  SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG 317
            ++ ++  +IPIW+LF ALGV SD++I+  I +  +D  +L +L   I D     D     
Sbjct: 46   TIPYIKVDIPIWVLFRALGVISDRDILEHICYDMQDAQMLELLKPCIDDGFVIQDR---- 101

Query: 318  RNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSLH----GTKQKARFLGYMVKCL 368
              AL ++    +GTT            +E +   + P +        +KA F GYMV  L
Sbjct: 102  EVALDFIGN--RGTTTGLNRERRLRYAQEILQKEMLPHISMAEGSESKKAYFFGYMVHRL 159

Query: 369  LQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPI 428
            L A   R   D+RD F  KRL+LAG LL    ++      K + + LQ+ +   +     
Sbjct: 160  LLAAMEREDLDDRDHFGKKRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHK----- 214

Query: 429  EYYLDASI----LTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQ 484
            E+ L+ ++    +TNGL  + +TG W    +     +G+   L R     TL  LRR   
Sbjct: 215  EFNLNLAVKHNTITNGLKYSLATGNWGDQKRTMASKAGVSQVLNRYTYASTLSHLRRCNT 274

Query: 485  QVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFN 543
             +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   ++   L  P+ E L  
Sbjct: 275  PLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCITVGTLSAPVIEFLEE 334

Query: 544  SGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDEL 603
             G+E L ++A  ++    KVFV+G W+GV +D  + V  +++ RR+ ++  +V + RD  
Sbjct: 335  WGLESLEENAHSTIPCT-KVFVNGVWMGVHRDPANLVKTIKKLRRKDDINAEVSVVRDIR 393

Query: 604  QSEVRIFMDAGRILRPLLVVENMG----------KIKSLEGKNYTFQALLDHGIIELVGT 653
            + E+R++ DAGR+ RPL +VEN             + + E K   + AL+  G+IE++  
Sbjct: 394  ERELRVYTDAGRVSRPLFIVENQQLLFTKKHINLMLSTDEEKKLKWSALVKTGLIEMLDA 453

Query: 654  EEEED---CCT----------AWGIKYLLKDIE---------DKKPIKFTHCELDMSFLL 691
            EEEE    C T          + G+     D +         +     +THCE+  S +L
Sbjct: 454  EEEETVMICMTPEDLENSRLQSMGVDPHANDGDFDPAARLKANPNAHTWTHCEIHPSMIL 513

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G+   IIPF +H+ + R  YQS     QA+G   TN  +R+DT+++ L+YPQ+PL  T  
Sbjct: 514  GVCASIIPFPDHNQSPRNTYQSAM-GKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRS 572

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
             + L              EL  GQNAIVA+  + GYNQEDS++MN+++++RG+FRS + R
Sbjct: 573  MEYLR-----------FRELPAGQNAIVAILCYSGYNQEDSVIMNQSAIDRGLFRSMYYR 621

Query: 812  SYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA 871
            SY  +++ K    +    +       ++ K G  D L+DDG    G N+   DI+IGK A
Sbjct: 622  SY-MDLEKKSGIQQLEEFEKPTRENTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTA 680

Query: 872  ---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCL 916
                            +  D S  LK TE G++ +V++++N +G+ F  + +R  R P +
Sbjct: 681  PIPPDSEELGQRTRAHTRRDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRVPQI 740

Query: 917  GDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIA 976
            GDKF+S HGQKG +G    QE+ PFT +GI PDIVINPHA PSR T G L+E  L K   
Sbjct: 741  GDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIVINPHAIPSRMTIGHLVECLLSKVAT 800

Query: 977  ALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPT 1036
             +G       +  ATPF   +V+ +++ L + G+   G E +Y G TG  +++ +++GPT
Sbjct: 801  IIGN------EGDATPFTELTVEGVSDVLRQKGYHSRGLEIMYHGHTGRKLQAQVYLGPT 854

Query: 1037 FYQRLIHMSEDKVKFRNTGPVHPLTRQPVADR 1068
            +YQRL HM +DK+  R  GPV  LTRQPV  R
Sbjct: 855  YYQRLKHMVDDKIHSRARGPVQILTRQPVEGR 886


>gi|297791275|ref|XP_002863522.1| hypothetical protein ARALYDRAFT_917015 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297309357|gb|EFH39781.1| hypothetical protein ARALYDRAFT_917015 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1165

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 369/1230 (30%), Positives = 581/1230 (47%), Gaps = 144/1230 (11%)

Query: 3    SDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSF 62
            ++D+ F D   L    +     F  +    F    GLV   ++S+N FI  G++K   + 
Sbjct: 11   TNDDNFIDKEKLSAPIKSTADKF--QLVPEFLKVRGLVKQHLDSFNYFINVGIKKIVHA- 67

Query: 63   GETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYS 122
                +    DPS           +RF  V + +PS    N  +E +  P   RL +MTY+
Sbjct: 68   -NCRIASVTDPS---------IYLRFKNVRVGEPSIMNINISEEIN--PHMCRLADMTYA 115

Query: 123  SRMKVKVQFQVYTQ-KRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMK 181
            + + V +++   +  K+ TS K                   + IIGR+P+M++S  C + 
Sbjct: 116  APIYVNIEYVHGSHGKKATSVK------------------NDFIIGRMPIMLRSCRCVLH 157

Query: 182  GVEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRN 235
            G ++      G+C  D GGYF+IKG EKV + QEQ+   R+ + +     +        N
Sbjct: 158  GKDEEELARLGECPLDPGGYFVIKGTEKVLLIQEQLSKNRIIIDSDKKGNI--------N 209

Query: 236  RLIVRLVDMSKFEDIKGGEKVLSVYFLST---EIPIWILFFALGVSSDKEIVNLIDFTCE 292
              +    +M+K + +   EK     FL     +IPI I+  A+G+ SD+EIV ++     
Sbjct: 210  ASVTSSTEMTKSKTVIQMEKEKIYLFLHQFVKKIPIVIVLKAMGMESDQEIVQMVG---R 266

Query: 293  DCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTF-PPGESTEECMNTYLFPSL 351
            D      L  SI +  ++    +K   AL Y++  +K T++ PP E     +  Y+   L
Sbjct: 267  DPRFSASLLPSIEECVSEGVNTQK--QALDYLEAKVKKTSYGPPPEKDGRAL--YILRDL 322

Query: 352  ---------HGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL----ER 398
                     +  +QK  ++G M++ +++A   +   D++D   NKRLEL+G+L+    E 
Sbjct: 323  FLAHVPVRDNNFRQKCFYVGVMLRRMIEAMLNKDSMDDKDYVGNKRLELSGQLMSLLFED 382

Query: 399  ELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDA----SILTNGLSRAFSTGAWSHPF 454
              K  ++ A K++   L +     R       YL      + ++ GL R  STG +    
Sbjct: 383  LFKTMLSEAIKKVDAILSKPSRASRF--DFSQYLTTGDSQNTISVGLERTLSTGNFDIKR 440

Query: 455  KRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDG 514
             R  R  G+   L R + + +L  + +   Q + + KV   R   PS WG +C   TP+G
Sbjct: 441  FRMHR-KGMTQVLTRLSFIGSLGFITKISPQFEKSRKVSGPRSLQPSQWGMLCPCDTPEG 499

Query: 515  ENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKLADDASYSL--GGKFKVFVDGDWIG 571
            E+CGLVKNL +   V+T   E P+    +  G+  L   ++  L     F V ++G  +G
Sbjct: 500  ESCGLVKNLALMTHVTTDEEEGPLVAMCYKLGVTDLEVLSAEELHTPDSFLVILNGLILG 559

Query: 572  VCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------ 625
              +    F + LRR RR  ++   V +  +E Q  V +  D GR+ RPL++ +       
Sbjct: 560  KHRRPQYFANSLRRLRRAGKIGEFVSVFTNEKQHCVYVASDGGRVCRPLVIADKGISRVK 619

Query: 626  MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIED-----KKPIKF 680
               +K L+    TF   +  G+IE +   EE +   A        ++++     K     
Sbjct: 620  QHHMKELQDGVRTFDDFIRDGLIEYLDVNEENNALIALYESEATTELDEGAEAAKIKADT 679

Query: 681  THCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLF 740
            TH E++   +LG+  G+IP+ +H+ + R  YQ      QA+G    N   R+DTL + L 
Sbjct: 680  THIEIEPFTILGVVAGLIPYPHHNQSPRNTYQCA-MGKQAMGNIAYNQLNRMDTLLYLLV 738

Query: 741  YPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASL 800
            YPQRPL  T   + +G    G            GQNA VAV  + GY+ ED++VMN++SL
Sbjct: 739  YPQRPLLTTRTIELVGYDKLGA-----------GQNATVAVMSNSGYDIEDAIVMNKSSL 787

Query: 801  ERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANL 860
            +RG  R   ++   A     E      + D ++   +      ++  LDDDG    G  +
Sbjct: 788  DRGFGRCIVMKKIVATCQKYE----NGTVDRILMPQRTGPDAEKMQILDDDGIASPGEII 843

Query: 861  QSGDIVIGK--------------YADSG---ADHSIKLKHTERGMVQKVVLSSNDDGKNF 903
            +  D+ I K               +DS    A    K    E  +V +V L S+  G   
Sbjct: 844  RPNDVYIYKQIPVCTTRDKITSPLSDSQYRPAREFFKGPEGETQVVDRVALCSDKSGSLC 903

Query: 904  SVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTP 963
                +R  R P LGDKFSS HGQKGV G +  QE+FPF+  GI PD+++NPH FPSR T 
Sbjct: 904  IKYIIRHTRRPELGDKFSSRHGQKGVCGTIIQQEDFPFSELGICPDLIMNPHGFPSRMTV 963

Query: 964  GQLLEAALGKGIAALGKGICSGLKRYATPFATPS-----VDAITEQLHRAGFSKWGTERL 1018
            G+++E    K       G+  G   Y + F   S     V+ I++ L   GFS  G + L
Sbjct: 964  GKMIELLGSKA------GVSCGRFHYGSAFGERSGHADKVETISKTLVDKGFSYSGKDLL 1017

Query: 1019 YDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGE 1078
            Y G +GE + + IF+GP +YQ+L HM  DK+  R +GP   +TRQP   + + GG++ GE
Sbjct: 1018 YSGLSGEPLEAYIFMGPIYYQKLKHMVLDKMHARGSGPRVMMTRQPTEGKSKNGGLRVGE 1077

Query: 1079 MERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICD 1138
            MERDCLIA+GA+  ++ERL   SD +++ +CR C  +            K++   C  C 
Sbjct: 1078 MERDCLIAYGASMLIYERLMISSDPFEVQVCRACGLLGYY-------NYKLKKAVCSTCK 1130

Query: 1139 SGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
            +GD+I    +PY  KLL QEL SM +  + 
Sbjct: 1131 NGDNIATMKLPYACKLLFQELQSMNVVPRL 1160


>gi|79529842|ref|NP_199327.4| DNA-directed RNA polymerase III subunit C2 [Arabidopsis thaliana]
 gi|332007826|gb|AED95209.1| DNA-directed RNA polymerase III subunit C2 [Arabidopsis thaliana]
          Length = 1161

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 366/1195 (30%), Positives = 579/1195 (48%), Gaps = 142/1195 (11%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
            F    GLV   ++S+N FI  G+ K   +   + +    DPS           +RF +V 
Sbjct: 39   FLKVRGLVKQHLDSFNYFINVGIHKIVKA--NSRITSTVDPS---------IYLRFKKVR 87

Query: 93   LDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYI 152
            + +PS    N     ++ P   RL +MTY++ + V +++   +      +K K+ ++   
Sbjct: 88   VGEPSII--NVNTVENINPHMCRLADMTYAAPIFVNIEYVHGSH----GNKAKSAKD--- 138

Query: 153  QKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVFV 206
                      N+IIGR+P+M++S  C + G ++      G+C  D GGYFIIKG EKV +
Sbjct: 139  ----------NVIIGRMPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFIIKGTEKVLL 188

Query: 207  AQEQICLKRLWVSN----SMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKV-LSVYF 261
             QEQ+   R+ + +    ++  +V   +E  +++ +++   M K       EK+ L ++ 
Sbjct: 189  IQEQLSKNRIIIDSDKKGNINASVTSSTEMTKSKTVIQ---MEK-------EKIYLFLHR 238

Query: 262  LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNAL 321
               +IPI I+  A+G+ SD+EIV ++     D      L  SI +  ++    +K   AL
Sbjct: 239  FVKKIPIIIVLKAMGMESDQEIVQMVG---RDPRFSASLLPSIEECVSEGVNTQK--QAL 293

Query: 322  KYVDKLIKGTTF--PP---GESTEECMNTYL----FPSLHGTKQKARFLGYMVKCLLQAY 372
             Y++  +K  ++  PP   G +     + +L     P  +  +QK  ++G M++ +++A 
Sbjct: 294  DYLEAKVKKISYGTPPEKDGRALSILRDLFLAHVPVPD-NNFRQKCFYVGVMLRRMIEAM 352

Query: 373  SGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDRTVRPI 428
              +   D++D   NKRLEL+G+L+    E   K  ++ A K +   L + +   R     
Sbjct: 353  LNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTMLSEAIKNVDHILNKPIRASRFDFSQ 412

Query: 429  EYYLDASI-LTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQ 487
                D+   ++ GL R  STG +     R  R  G+   L R + + ++  + +   Q +
Sbjct: 413  CLNKDSRYSISLGLERTLSTGNFDIKRFRMHR-KGMTQVLTRLSFIGSMGFITKISPQFE 471

Query: 488  YTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGM 546
             + KV   R   PS WG +C   TP+GE+CGLVKNL +   V+T   E P+    +  G+
Sbjct: 472  KSRKVSGPRSLQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTTDEEEGPLVAMCYKLGV 531

Query: 547  EKLADDASYSL--GGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQ 604
              L   ++  L     F V ++G  +G       F + LRR RR  ++   V +  +E Q
Sbjct: 532  TDLEVLSAEELHTPDSFLVILNGLILGKHSRPQYFANSLRRLRRAGKIGEFVSVFTNEKQ 591

Query: 605  SEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEED 658
              V +  D GR+ RPL++ +          +K L+    TF   +  G+IE +   EE +
Sbjct: 592  HCVYVASDVGRVCRPLVIADKGISRVKQHHMKELQDGVRTFDDFIRDGLIEYLDVNEENN 651

Query: 659  CCTAW----GIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQ 714
               A     G   L +  E  K    TH E++   +LG+  G+IP+ +H+ + R  YQ  
Sbjct: 652  ALIALYESDGTTELDEGAEAAKA-DTTHIEIEPFTILGVVAGLIPYPHHNQSPRNTYQCA 710

Query: 715  KHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNG 774
                QA+G    N   R+DTL + L YPQRPL  T   + +G    G            G
Sbjct: 711  -MGKQAMGNIAYNQLNRMDTLLYLLVYPQRPLLTTRTIELVGYDKLG-----------AG 758

Query: 775  QNAIVAVNVHLGYNQEDSLVMNRASLERGMFRS---EHIRSYKAEVDNKEMQVKRRSSDD 831
            QNA VAV    GY+ ED++VMN++SL+RG  R    + I +   + DN        ++D 
Sbjct: 759  QNATVAVMSFSGYDIEDAIVMNKSSLDRGFGRCIVMKKIVAMSQKYDNC-------TADR 811

Query: 832  MVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGK-------------YADSG---A 875
            ++   +      ++  LDDDG    G  ++  DI I K              +DS    A
Sbjct: 812  ILIPQRTGPDAEKMQILDDDGLATPGEIIRPNDIYINKQVPVDTVTKFTSALSDSQYRPA 871

Query: 876  DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLES 935
                K    E  +V +V L S+  G+      +R  R P LGDKFSS HGQKGV G +  
Sbjct: 872  REYFKGPEGETQVVDRVALCSDKKGQLCIKYIIRHTRRPELGDKFSSRHGQKGVCGIIIQ 931

Query: 936  QENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFAT 995
            QE+FPF+  GI PD+++NPH FPSR T G+++E    K       G+  G   Y + F  
Sbjct: 932  QEDFPFSELGICPDLIMNPHGFPSRMTVGKMIELLGSKA------GVSCGRFHYGSAFGE 985

Query: 996  PS-----VDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVK 1050
             S     V+ I+  L   GFS  G + LY G +GE V + IF+GP +YQ+L HM  DK+ 
Sbjct: 986  RSGHADKVETISATLVEKGFSYSGKDLLYSGISGEPVEAYIFMGPIYYQKLKHMVLDKMH 1045

Query: 1051 FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICR 1110
             R +GP   +TRQP   + + GG++ GEMERDCLIA+GA+  ++ERL   SD +++ +CR
Sbjct: 1046 ARGSGPRVMMTRQPTEGKSKNGGLRVGEMERDCLIAYGASMLIYERLMISSDPFEVQVCR 1105

Query: 1111 KCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
             C  +            K++   C  C +GD+I    +PY  KLL QEL SM + 
Sbjct: 1106 ACGLLGYY-------NYKLKKAVCTTCKNGDNIATMKLPYACKLLFQELQSMNVV 1153


>gi|432329280|ref|YP_007247424.1| DNA-directed RNA polymerase subunit B [Aciduliprofundum sp.
            MAR08-339]
 gi|432135989|gb|AGB05258.1| DNA-directed RNA polymerase subunit B [Aciduliprofundum sp.
            MAR08-339]
          Length = 1201

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 382/1257 (30%), Positives = 588/1257 (46%), Gaps = 201/1257 (15%)

Query: 39   LVSHQINSYNEFIKNG------LQKAFDSFGETIVEP----GYDPSKKGEGEWRYASMRF 88
            +V+H I SYN+ I         +Q+  D+   T  +P      D +K G    +   + F
Sbjct: 13   VVNHHIASYNDLIPTPDNPNSVMQEIVDTTKVTDEDPPGVVTLDRTKTG---GKTIKIIF 69

Query: 89   GQ-----------VTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQK 137
            G+           + + KP      G     + P  ARL++M+Y + + +++        
Sbjct: 70   GRKNEYNDGITPTIKIGKPEIKEATGATVQ-ITPMEARLRDMSYLAPLYLQIMV------ 122

Query: 138  RVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLC---------WMKGVEK--- 185
             V  D              L  E   + IG  PVMVKS +C         ++  + K   
Sbjct: 123  -VECD----------DSGCLEKEPEMVKIGDFPVMVKSKICTLHEDNIDDYLDSISKDKS 171

Query: 186  -------------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSEN 232
                         G+   D GGYFII G+E+V V+ E +   R+ V  +  +    ++  
Sbjct: 172  ILNWPYRKKLEYVGEDPDDPGGYFIIGGSERVLVSLEDLAPNRVLVEKNERYNTVVETAK 231

Query: 233  --KRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFT 290
               + R    L  M K  D   G  V+SV  ++  IP+ IL  ALG+  D++I   I   
Sbjct: 232  VFSQRRGYRALTIMEKKND---GILVVSVPAVAGTIPLVILMKALGLERDEDIYKAI--- 285

Query: 291  CEDCSILNILFASIHDADN----KCDEFRKGRNALKYVDKLIKGTTFPPGESTE------ 340
              D  +  I  A+I + +N      +  R  ++A++Y++K      F  G++ E      
Sbjct: 286  VSDEKMSVIALANIEEVENDKLYPPNGIRTQKDAIEYLEK-----RFAAGQAKEYREKKI 340

Query: 341  -ECMNTYLFPSLHGTKQ----KARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGEL 395
             + +++ L P L   K+    KA +LG M K +L+ + G RK D++D   NKR++L+G+L
Sbjct: 341  SQILDSSLLPHLGTDKEDRIKKAYYLGRMAKRILELHLGLRKEDDKDHLANKRIKLSGDL 400

Query: 396  LERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFK 455
            LE   ++      K +   L+R     + +R I   +   +LT  +  A STG W     
Sbjct: 401  LEDLFRMAFEALMKDLKYQLERTYNRKKGIR-IRVSIRQDVLTQKIMHAMSTGNWVG--G 457

Query: 456  RTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGE 515
            RT    G+   L R + + TL  LRR    +  +    +AR  HP+ WG++C   TP+G+
Sbjct: 458  RT----GVSQLLDRTSHMSTLSHLRRVISPLTRSQPHFEARDLHPTQWGRLCPNETPEGQ 513

Query: 516  NCGLVKNLGVTGLVSTSILEP-IFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCK 574
            NCGLVKN  +   VS    E    + L + G+E    D  Y  G   +V+++G+ +G   
Sbjct: 514  NCGLVKNAALIIDVSEGYPEEKALKILRDLGVE----DRQYETGNLARVYLNGNLVGYHG 569

Query: 575  DSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKS--- 631
            D  S   ++R +RR+  +  Q+ ++ D+   EV +  D GRI RPLLVVEN G IK    
Sbjct: 570  DGKSLTDDIRARRRKGLISHQINVRYDDRTQEVMVNCDKGRIRRPLLVVEN-GNIKYTSR 628

Query: 632  ----LEGKNYTFQALLDHGIIELVGTEEEEDCCTA-----------------------W- 663
                LE        L+  G+IE +  EEEE+   A                       W 
Sbjct: 629  HRELLERGKIDVDDLVREGVIEWIDAEEEENAYIAVYAYDVPERCPHCNRVLGRGDVIWA 688

Query: 664  ----GIKYLLK--------DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLY 711
                G    L+        ++E K   + TH E+D   +LG   G +P+ +H+ + R+  
Sbjct: 689  NPGEGEHVTLQCKHCGAEFEVEKKLTEEHTHLEIDPLLILGAVAGCVPYPHHNSSPRITM 748

Query: 712  QSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPEL 771
             +     Q++G P  N   R DT  H L YPQ P+ +T   D +        + + RP  
Sbjct: 749  GAAM-LKQSLGLPAANYRRRPDTRGHLLHYPQAPIVKTKTMDFV--------NFMRRPA- 798

Query: 772  YNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAE----VDNKEMQVKRR 827
              GQNA+VA+  + GYN +D++VMN+A++ERG  RS   R+YK+E       +E + +  
Sbjct: 799  --GQNAVVAIISYHGYNMQDAIVMNKAAVERGFGRSTFFRTYKSEERRYPGGQEDRFEIP 856

Query: 828  SSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA--------------DS 873
            S D      + + K+     LD+DG       ++ GD++IGK +                
Sbjct: 857  SPDVRGAMTEERYKL-----LDEDGLISPEMYVRGGDVLIGKTSPPRFLEEEAELLGPQK 911

Query: 874  GADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
              + S+ ++  E G V  V+L+ +++      V +R  R P LGDKF+S HGQKGV+G +
Sbjct: 912  RRESSVTMRPEEVGWVDSVLLTVSENNSRLVKVKVRDQRIPELGDKFASRHGQKGVVGAI 971

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
              QE+ PFT  GI+PD++INPHA PSR T G +LE   GK + +L      G     T F
Sbjct: 972  VPQEDMPFTEGGIIPDLIINPHAIPSRMTVGHILEMIGGK-VGSLEGRFVDG-----TVF 1025

Query: 994  ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
                  A+ E L R GF   G E +YDG TG  + + IFIG  +YQ+L HM   K   R+
Sbjct: 1026 KGEPEKALREALVRNGFKYNGKEIMYDGITGRKIEAEIFIGVIYYQKLHHMVAGKFHARS 1085

Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHIC--RK 1111
             GPV  LTRQP   R R GG++FGEMERD LI HGAA  + +RL   SD   +++C   +
Sbjct: 1086 RGPVQILTRQPTEGRSRLGGLRFGEMERDTLIGHGAAMVIKDRLLDNSDGTVLYVCGNPE 1145

Query: 1112 CKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
            C ++A +  R  G  R      C +C +  +I      Y  KL+  EL S+G+ ++ 
Sbjct: 1146 CGHIA-MFDRKRGILR------CPVCGNTTNIYPIETSYAFKLMHDELASLGVIMRL 1195


>gi|432094370|gb|ELK25947.1| DNA-directed RNA polymerase III subunit RPC2 [Myotis davidii]
          Length = 1122

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 368/1202 (30%), Positives = 557/1202 (46%), Gaps = 148/1202 (12%)

Query: 17   LGEEF--LKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPS 74
            L EEF  L      A +      GLV   I+S+N FI   ++K        I++     +
Sbjct: 4    LAEEFGNLTPEQLAAPIPTVEVKGLVKQHIDSFNYFINVEIKK--------IMKANEKVT 55

Query: 75   KKGEGEW--RYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQ 132
               +  W  +Y ++  G   +++ SF          + P   RL++MTYS+ + V +++ 
Sbjct: 56   SDADPMWYLKYLNIYVGLPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEY- 108

Query: 133  VYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKG 186
                         T   Q I +  L        IGR+P+M++S  C + G       +  
Sbjct: 109  -------------TRGSQRIIRNALP-------IGRMPIMLRSSNCVLTGKTPAEFAKLN 148

Query: 187  DCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVS----NSMGWTVAYKSENKRNRLIVRLV 242
            +C  D GGYFI+KG EKV + QEQ+   R+ V      ++G +V   +  K++R      
Sbjct: 149  ECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRKGTVGASVTSSTHEKKSR-----T 203

Query: 243  DMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFA 302
            +M+    +K G   L    LS +IPI I+F A+GV  D+EIV +I     +  ++     
Sbjct: 204  NMA----VKQGRFYLRHNTLSEDIPIVIIFKAMGVECDQEIVQMIG---TEEHVMAAFGP 256

Query: 303  SIHDADNKCDEFRKGRNALKYVDKLIKGTTF----PPGESTEECMNTYLFPSLHGTKQKA 358
            S+ +   K   F +   ALKY+   ++        P     EE     L  S   T    
Sbjct: 257  SLEEC-QKAQIFTQ-MQALKYIGNKVRRQRMWGGGPKKTKIEEARE--LLASTILTHVPV 312

Query: 359  RFLGYMVKCLLQAYSGRR--------KCDNRDDFRNKRLELAGELLERELKVHIAHARKR 410
            +   +  KC+  A   RR        K D+RD + NKRLELAG+LL    +         
Sbjct: 313  KEFNFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSE 372

Query: 411  MAKALQRDLYGDRTVR-PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGR 469
            M K   + +   R  +  +  ++    +TNG+  A STG WS    + +R  G+   L R
Sbjct: 373  MKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWSLKRFKMDR-QGVTQVLSR 431

Query: 470  ANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLV 529
             + +  L  + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   +
Sbjct: 432  LSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHI 491

Query: 530  STSILE-PIFEQLFNSGMEKL----ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELR 584
            +T + + PI     N G+E +     ++ SY     F VF++G+ +GV +D    V+  R
Sbjct: 492  TTDMEDGPIVRLASNLGVEDVNLLCGEELSYP--NVFLVFLNGNILGVIRDHKKLVNTFR 549

Query: 585  RKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYT 638
              RR   +   V I  +     V I  D GR+ RP ++V+          ++ L      
Sbjct: 550  LMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRN 609

Query: 639  FQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGII 698
            F+  L   ++E +   EE DC  A     + KD         TH E++   LLG+  G+I
Sbjct: 610  FEDFLHESLVEYLDVNEENDCNIALYEHTINKDT--------THLEIEPFTLLGVCAGLI 661

Query: 699  PFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKP 758
            P+ +H+ + R  YQ      QA+G    N   R+DTL + L YPQ+P+ +T   +     
Sbjct: 662  PYPHHNQSPRNTYQC-AMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIE----- 715

Query: 759  GYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVD 818
                  ++   +L  GQNA VAV  + GY+ ED+LV+N+ASL+RG  R    ++ K  + 
Sbjct: 716  ------LIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLK 769

Query: 819  NKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA--- 875
                Q   +    +++    +  I R + LD +G    G  +++  +++ K   +     
Sbjct: 770  RYTNQTFDKVMGPILD-AATRKPIWRHEILDANGICSPGEKVENKQVLVNKSMPTVTQIP 828

Query: 876  -------------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSS 922
                         D  I  K      ++KV++SSN +      + LRQ R P +GDKFSS
Sbjct: 829  LEGSSVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSS 888

Query: 923  MHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGI 982
             HGQKGV G +  QE+ PF   GI PDI++NPH FPSR T G+L+E   GK       G+
Sbjct: 889  RHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKA------GV 942

Query: 983  CSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLI 1042
              G   Y T F    V  + E L R G++  G + +  G TGE + + I+ GP +YQ+L 
Sbjct: 943  LDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLK 1002

Query: 1043 HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSD 1102
            HM  DK+  R  GP   LTRQP   R R GG++ GEMERDCLI +GA+  L ERL   SD
Sbjct: 1003 HMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSD 1062

Query: 1103 SYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSM 1162
            ++++ +C +C             G      +C  C S   +    +PY  KLL QEL SM
Sbjct: 1063 AFEVDVCGQC-------------GLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQSM 1109

Query: 1163 GI 1164
             I
Sbjct: 1110 NI 1111


>gi|6606101|gb|AAF19063.1|AF107791_1 DNA-dependent RNA polymerase II RPB140 [Chaetomium elatum]
          Length = 934

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 333/963 (34%), Positives = 492/963 (51%), Gaps = 116/963 (12%)

Query: 201  AEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE-----NKRNRLI--VRLVDMSKFEDIKG 252
            +EKV +AQE+     + V     G +V+Y++E      K +RLI  +++   SK    KG
Sbjct: 1    SEKVLIAQERSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLISSLQMKLHSKGSPEKG 60

Query: 253  ---GEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADN 309
                   +++ ++  ++ + I+F ALG+ SD++I+N I +   D  +L  L   I +A  
Sbjct: 61   RLANTVSVTLPYVREDVSLGIVFRALGIVSDEDILNHICYDRTDTQMLEALRPCIEEA-- 118

Query: 310  KCDEFRKGRNALKYVDKLIKGTT----FPPGESTEECMNTYLFPSLHGTK----QKARFL 361
             C + R+   AL ++ K   G           + ++ +   + P +  T+    +KA FL
Sbjct: 119  FCIQDRE--IALDFIGKRGNGNAGQNRMNRVRAAKDLLQKEMLPHISQTEGCETRKAFFL 176

Query: 362  GYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYG 421
            GYMV  LLQ   GRR  D+RD F  KRL+LAG LL +  +  I    + +   ++R +  
Sbjct: 177  GYMVHRLLQCALGRRDPDDRDHFGKKRLDLAGPLLAKLFRNVIRRMTQDLMSYMKRCIDT 236

Query: 422  DRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRR 481
            ++    +   +  S LTNGL  + +TG W    K     +G+   L R     TL  LRR
Sbjct: 237  NKNFS-LALGIKHSTLTNGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRR 295

Query: 482  TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQ 540
            T   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   VS  +  +PI E 
Sbjct: 296  TNTPIGRDGKLAKPRQLHNTHWGLVCPADTPEGQACGLVKNLSLMCYVSVGTPADPIVEF 355

Query: 541  LFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKR 600
            +   GME L +          KVFV+G W+GV +D    V+ ++  RR+  +  +V + R
Sbjct: 356  MIARGMEVLEEYEPLRYPNATKVFVNGTWVGVHQDPKHLVTLVQGLRRKNVISFEVSLVR 415

Query: 601  DELQSEVRIFMDAGRILRPLLVV-------------------ENMGKIK--SLEGKNYT- 638
            D    E +IF DAGR++RPL  V                   E++GK+K  +  GK +  
Sbjct: 416  DIRDREFKIFSDAGRVMRPLFTVEQEPNGESGAEKGALILNKEHIGKLKLDTEYGKYHPD 475

Query: 639  ---FQALLDHGIIELVGTEEEED---CCTAWGIKYLLKDIEDK----------------- 675
               +Q LL  G IE +  EEEE    C T   +       + +                 
Sbjct: 476  YWGWQGLLKSGAIEYLDAEEEETVMICMTPQDLDQFRARKQGRFEQDNSGLGNNRIKTKP 535

Query: 676  KPIK--FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVD 733
             PI   +THCE+  S LLG+   IIPF +H+ + R  YQS     QA+GF  TN S R+D
Sbjct: 536  NPITHMYTHCEIHPSMLLGICASIIPFPDHNQSPRNTYQS-AMGKQAMGFFLTNYSRRMD 594

Query: 734  TLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSL 793
            T+++ L+YPQ+PL  T   +            L   EL  GQNAIVA+  + GYNQEDS+
Sbjct: 595  TMANILYYPQKPLATTRSME-----------FLKFRELPAGQNAIVAIACYSGYNQEDSV 643

Query: 794  VMNRASLERGMFRSEHIRSY-----KAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSL 848
            +MN++S++RG+FRS   RSY     +  ++  E   K   SD       ++ K    D L
Sbjct: 644  IMNQSSIDRGIFRSLFFRSYTDCEKRVGINIVEQFEKPNRSD------TLRLKHSTYDKL 697

Query: 849  DDDGFPFIGANLQSGDIVIGKY-------ADSGA--------DHSIKLKHTERGMVQKVV 893
            D DG    G  +   DI+IGK        A+ G         D S  L+ TE G++ +VV
Sbjct: 698  DADGIVAPGIRVSGEDIIIGKTCPINPDNAELGQRSNQHVKRDASTPLRSTESGIIDQVV 757

Query: 894  LSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVIN 953
            +++N DG  +  V +R  + P +GDKF+S HGQKG +G    QE+ PFT +GI PDI+IN
Sbjct: 758  VTTNQDGMRYVKVRVRTTKVPQIGDKFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIIN 817

Query: 954  PHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKW 1013
            PHA PSR T   L+E  L K ++ L      G++  ATPF   +VD++++ L   G+   
Sbjct: 818  PHAIPSRMTIAHLIECLLSK-VSTL-----KGMEGDATPFTDVTVDSVSDLLREHGYQSR 871

Query: 1014 GTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGG 1073
            G E +Y G TG  +RS +F GPT+YQRL HM +DK+  R  GP+  +TRQPV  R R GG
Sbjct: 872  GFEIMYHGHTGRKLRSQVFFGPTYYQRLRHMVDDKIHARARGPLQIMTRQPVEGRARDGG 931

Query: 1074 IKF 1076
            ++F
Sbjct: 932  LRF 934


>gi|418204390|gb|AFX61749.1| RNA polymerase II second-largest subunit, partial [Ascosphaera
            larvis]
          Length = 1110

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 345/1131 (30%), Positives = 539/1131 (47%), Gaps = 154/1131 (13%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RY 83
            C     SFF   GLVS Q++SY+EFI   +Q+  D  G+  V+    P +        R 
Sbjct: 12   CWTVISSFFEAKGLVSQQLDSYDEFITTTMQELVDEQGQVTVDQTLTPDEDEMNPVVVRR 71

Query: 84   ASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDK 143
              ++FG   + +P+    +G     M P+ ARL+N+TYSS + ++   ++   + V+   
Sbjct: 72   YELKFGTCQIGRPTMTESDGTTTV-MLPQEARLRNLTYSSPIYLEFTKRITEAREVSMAP 130

Query: 144  FKT--------------GREQYIQKE-----VLSDETTNIIIGRIPVMVKSDLCWMKGVE 184
                              R  Y+Q E         +  NI IG++P+MV+S  C ++ + 
Sbjct: 131  DAEDEDDEEDERDADLKARGTYLQWEEKQLGPKEHKKENIFIGKMPIMVRSKYCLLRDLS 190

Query: 185  K------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENK 233
            +       +C FD GGYF+I G+EKV +AQE+     + +      +   +    +S  +
Sbjct: 191  EQSLYNWNECPFDSGGYFVINGSEKVLIAQERSAGNIVQIFQKAPPSPTPYIAEIRSAIE 250

Query: 234  R-----NRLIVRLVDMSKFEDIKGGEKVL----SVYFLSTEIPIWILFFALGVSSDKEIV 284
            +     ++L ++L      ++  GG+       ++ ++  +IPI+I+F ALGV SD++I+
Sbjct: 251  KGSRILSQLSIKLFKARTEKNTTGGQSGAMIKSTLPYVRDDIPIFIVFRALGVVSDEDIL 310

Query: 285  NLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES---TEE 341
            N I +   D  +L +L  +I      C   ++   AL ++ K  +  +    +      +
Sbjct: 311  NHICYDPNDLPMLELLKPTIQ----TCLCIQEREVALDFIAKRGQHPSMTQDKRIRFARD 366

Query: 342  CMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLE 397
             M     P +  ++    +KA F GYMV  LLQ   GRR  D+RD F  KRL+LAG LL 
Sbjct: 367  IMQKEFLPHISQSEGSETRKAFFFGYMVHKLLQCALGRRDVDDRDHFGKKRLDLAGPLLA 426

Query: 398  RELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRT 457
               +       K + + +Q  +  +  ++ +   +    L+ GL  A +TG W    K  
Sbjct: 427  GLFRTLFMRLTKDLNRYVQICVEKNTQLQ-LNIAVKNGTLSGGLKYALATGNWGEQKKAA 485

Query: 458  ERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENC 517
               +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ C
Sbjct: 486  SSKAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQAC 545

Query: 518  GLVKNLGV-----TGLVSTSILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGV 572
            GLVKNL +      G  +T IL+ +  Q     ME L +          KVF++G W+GV
Sbjct: 546  GLVKNLSLMCTITVGTQATGILDFLIAQ----HMEVLEEYEPQVSPDVTKVFLNGVWVGV 601

Query: 573  CKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------- 625
             ++    VS ++  RR+  LP +  + RD    E +IF DAGR+ RPL VV+N       
Sbjct: 602  HRNPSHLVSMIQSLRRQNLLPYEASLVRDIRDKEFKIFTDAGRVCRPLFVVDNDPASSNC 661

Query: 626  ------MGKIKSLEG---------------KNYTFQALLDHGIIELVGTEEEEDCCTAWG 664
                     IK LE                +++ ++ L+  G+IE V  EEEE       
Sbjct: 662  GNLVLTKEHIKKLEADKDLPRSLDPEERRARHFGWRGLVTSGVIEYVDAEEEETIMIVMT 721

Query: 665  IKYL----------------------LKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFAN 702
             + L                      ++ +  +K   +THCE+  S +LG+   IIPF +
Sbjct: 722  PEELESQKQMKRGAVPVADHSDPNRRVRPLYSQKVHMYTHCEIHPSMILGICASIIPFPD 781

Query: 703  HDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGH 762
            H+ + R  YQS     QA+G   TN   R++T+S+ L+YPQ+PL  T   +         
Sbjct: 782  HNQSPRNTYQS-AMGKQAMGVFLTNFDQRMETMSNILYYPQKPLATTRSME--------- 831

Query: 763  NHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEM 822
               L   +L  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R Y        +
Sbjct: 832  --FLKFRDLPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRCYTDSEKVVGV 889

Query: 823  QVKRR----SSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA------- 871
             V  R    S  D +   K Q +      L  DG   IG ++  G ++IGK A       
Sbjct: 890  SVTERFEVPSRSDTLR-AKDQEEYKH---LGADGIAEIGEHVSGGAVIIGKTAPLAPESE 945

Query: 872  --------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSM 923
                     +  D S  L+ TE G V +VV++++ D   F  V +R  + P +GDKF+S 
Sbjct: 946  ELGQRESHHTKIDTSTCLRTTETGHVDQVVVTTSSDDTKFVKVRMRTTKIPQIGDKFASR 1005

Query: 924  HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGIC 983
            HGQKG +G    QE+ PFT +GI PD++INPHA PSR T   L+E  L K +AAL     
Sbjct: 1006 HGQKGTIGITYCQEDMPFTREGITPDLIINPHAIPSRMTIAHLIECQLSK-VAAL----- 1059

Query: 984  SGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIG 1034
             G +  ATPF   +VD+++  L  +G+   G E +Y+G TG  + + +F+G
Sbjct: 1060 RGFEGDATPFTDVTVDSVSNLLRESGYQSRGFEVMYNGHTGRKLVAQVFLG 1110


>gi|418204388|gb|AFX61748.1| RNA polymerase II second-largest subunit, partial [Ascosphaera cf.
            larvis 64254]
          Length = 1110

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 345/1131 (30%), Positives = 539/1131 (47%), Gaps = 154/1131 (13%)

Query: 26   CRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RY 83
            C     SFF   GLVS Q++SY+EFI   +Q+  D  G+  V+    P +        R 
Sbjct: 12   CWTVISSFFEAKGLVSQQLDSYDEFITTTMQELVDEQGQVTVDQTLTPDEDEMNPVVVRR 71

Query: 84   ASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDK 143
              ++FG   + +P+    +G     M P+ ARL+N+TYSS + ++   ++   + V+   
Sbjct: 72   YELKFGTCQIGRPTMTESDGTTTV-MLPQEARLRNLTYSSPIYLEFTKRITEAREVSMAP 130

Query: 144  FKT--------------GREQYIQKE-----VLSDETTNIIIGRIPVMVKSDLCWMKGVE 184
                              R  Y+Q E         +  NI IG++P+MV+S  C ++ + 
Sbjct: 131  DAEDEDDEEDERDADLKARGTYLQWEEKQLGPKEHKKENIFIGKMPIMVRSKYCLLRDLS 190

Query: 185  K------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENK 233
            +       +C FD GGYF+I G+EKV +AQE+     + +      +   +    +S  +
Sbjct: 191  EQSLYNWNECPFDSGGYFVINGSEKVLIAQERSAGNIVQIFQKAPPSPTPYIAEIRSAIE 250

Query: 234  R-----NRLIVRLVDMSKFEDIKGGEKVL----SVYFLSTEIPIWILFFALGVSSDKEIV 284
            +     ++L ++L      ++  GG+       ++ ++  +IPI+I+F ALGV SD++I+
Sbjct: 251  KGSRILSQLSIKLFKARTEKNTTGGQSGAMIKSTLPYVRDDIPIFIVFRALGVVSDEDIL 310

Query: 285  NLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES---TEE 341
            N I +   D  +L +L  +I      C   ++   AL ++ K  +  +    +      +
Sbjct: 311  NHICYDPNDLPMLELLKPTIQ----TCLCIQEREVALDFIAKRGQHPSMTQDKRIRFARD 366

Query: 342  CMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLE 397
             M     P +  ++    +KA F GYMV  LLQ   GRR  D+RD F  KRL+LAG LL 
Sbjct: 367  IMQKEFLPHISQSEGSETRKAFFFGYMVHKLLQCALGRRDVDDRDHFGKKRLDLAGPLLA 426

Query: 398  RELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRT 457
               +       K + + +Q  +  +  ++ +   +    L+ GL  A +TG W    K  
Sbjct: 427  GLFRTLFMRLTKDLNRYVQICVEKNTQLQ-LNIAVKNGTLSGGLKYALATGNWGEQKKAA 485

Query: 458  ERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENC 517
               +G+   L R     TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ C
Sbjct: 486  SSKAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQAC 545

Query: 518  GLVKNLGV-----TGLVSTSILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGV 572
            GLVKNL +      G  +T IL+ +  Q     ME L +          KVF++G W+GV
Sbjct: 546  GLVKNLSLMCTITVGTQATGILDFLIAQ----HMEVLEEYEPQVSPDVTKVFLNGVWVGV 601

Query: 573  CKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------- 625
             ++    VS ++  RR+  LP +  + RD    E +IF DAGR+ RPL VV+N       
Sbjct: 602  HRNPSHLVSMIQSLRRQNLLPYEASLVRDIRDKEFKIFTDAGRVCRPLFVVDNDPASSNC 661

Query: 626  ------MGKIKSLE---------------GKNYTFQALLDHGIIELVGTEEEEDCCTAWG 664
                     IK LE                +++ ++ L+  G+IE V  EEEE       
Sbjct: 662  GNLVLTKEHIKKLEADKDLPRSLDPEERRARHFGWRGLVTSGVIEYVDAEEEETIMIVMT 721

Query: 665  IKYL----------------------LKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFAN 702
             + L                      ++ +  +K   +THCE+  S +LG+   IIPF +
Sbjct: 722  PEELESQKQMKRGAMPVADHSDPNRRVRSLYSQKVHMYTHCEIHPSMILGICASIIPFPD 781

Query: 703  HDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGH 762
            H+ + R  YQS     QA+G   TN   R++T+S+ L+YPQ+PL  T   +         
Sbjct: 782  HNQSPRNTYQS-AMGKQAMGVFLTNFDQRMETMSNILYYPQKPLATTRSME--------- 831

Query: 763  NHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEM 822
               L   +L  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS   R Y        +
Sbjct: 832  --FLKFRDLPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRCYTDSEKVVGV 889

Query: 823  QVKRR----SSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA------- 871
             V  R    S  D +   K Q +      L  DG   IG ++  G ++IGK A       
Sbjct: 890  SVTERFEVPSRSDTLR-AKDQEEYKH---LGADGIAEIGEHVSGGAVIIGKTAPLAPESE 945

Query: 872  --------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSM 923
                     +  D S  L+ TE G V +VV++++ D   F  V +R  + P +GDKF+S 
Sbjct: 946  ELGQRESHHTKIDTSTCLRTTETGHVDQVVVTTSSDDTKFVKVRMRTTKIPQIGDKFASR 1005

Query: 924  HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGIC 983
            HGQKG +G    QE+ PFT +GI PD++INPHA PSR T   L+E  L K +AAL     
Sbjct: 1006 HGQKGTIGITYCQEDMPFTREGITPDLIINPHAIPSRMTIAHLIECQLSK-VAAL----- 1059

Query: 984  SGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIG 1034
             G +  ATPF   +VD+++  L  +G+   G E +Y+G TG  + + +F+G
Sbjct: 1060 RGFEGDATPFTDVTVDSVSNLLRESGYQSRGFEVMYNGHTGRKLVAQVFLG 1110


>gi|346972359|gb|EGY15811.1| DNA-directed RNA polymerase III subunit RPC2 [Verticillium dahliae
            VdLs.17]
          Length = 1160

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 385/1235 (31%), Positives = 574/1235 (46%), Gaps = 170/1235 (13%)

Query: 8    FTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIV 67
             TDP S  +   + L  F +          GLV   I+SYN F+ + ++    +   TI 
Sbjct: 21   LTDPISTQEDKFQLLPAFLKVK--------GLVKQHIDSYNFFVDHEIKDIVRA-NRTIR 71

Query: 68   EPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEH-DMFPRHARLQNMTYSSRMK 126
                  S      W    + F  + ++ PS    N    H ++ P   RL++MTY + + 
Sbjct: 72   ------SDVNSSFW----LEFTDIRVESPSRLDFNDARAHSEVTPMECRLRDMTYGAPIF 121

Query: 127  VKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK- 185
            V + +          DK K  R              N+ +GR+PVM+KS  C + G    
Sbjct: 122  VDIAY--------IRDKSKIVRR-------------NVPLGRLPVMLKSAKCRLNGASNK 160

Query: 186  -----GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVR 240
                  +C  D GGYFII G EKV + QEQ+   R+ V             +++N +I  
Sbjct: 161  EMALMNECPLDPGGYFIINGTEKVILIQEQLSKNRVIVE-----------ADEKNNIITA 209

Query: 241  LVDMSKFE-------DIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLI---DFT 290
             V  S  E        +K     L    L    PI I+  ALG  SD EI+ L+   D  
Sbjct: 210  SVTSSTHERKTKTNITLKKDRISLVHNVLVEPAPIVIVLKALGGLSDLEIMQLVAGDDGR 269

Query: 291  CEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIK----GTTFPPGES----TEEC 342
             +D   +N       D   K   + + + AL+++   +K    G   P  ++     EE 
Sbjct: 270  YQDEFTVNF------DEATKQGVYTQ-QQALEWIGSRVKMGGRGRFQPNSQARKNNIEEG 322

Query: 343  MNTY-----LFPSLHGTK--QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGEL 395
            M+           + G     KA ++ +M + +L A +     D+RD   NKRLELAG+L
Sbjct: 323  MDALSNLIIAHIPVEGLDFYPKAIYVAFMTRRVLMAQANMSLVDDRDFVGNKRLELAGQL 382

Query: 396  L----ERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYL---DASILTNGLSRAFSTG 448
            L    E   K      +  + K L++D   +R V      +    A+ +  G++RA  TG
Sbjct: 383  LSLLFEDLFKKFCGDVKASIDKVLKKD---NRAVAMDAVTMISNHANNIGQGINRAIQTG 439

Query: 449  AWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICF 508
             W+       R +G+   L R + +  L  + R   Q + T KV   R   PS WG +C 
Sbjct: 440  NWTVKRFNMNR-AGVTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCP 498

Query: 509  LSTPDGENCGLVKNLGV-TGLVSTSILEPIFEQLF--NSGMEKLADDASYSLG--GKFKV 563
              TP+GE CGLVKNL + T + + +  EP+   +F  +  +E + + +   +   G + +
Sbjct: 499  SDTPEGEACGLVKNLALMTHITTNAEEEPVKRWVFTVDDNVEPIRNFSGSEMHREGSYII 558

Query: 564  FVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVV 623
             ++G    + K    F +  R  RRR  +   V +  +   + V I  D GRI RP ++V
Sbjct: 559  HINGTPFALTKFPKRFTNRFRTMRRRGWISPFVGVHINNHFNAVHIATDEGRICRPYIIV 618

Query: 624  ENMGK-------IKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKK 676
            +N GK       +K L+    TF   L +G++E +   EE D   A          E   
Sbjct: 619  KN-GKPKLKAEHLKLLQLGKATFDDFLTNGVVEYLDVNEENDTLVAL--------YETDV 669

Query: 677  PIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLS 736
                TH E++   +LG   G+IPF +H+ + R  YQ      QAIG    N   R+DTL 
Sbjct: 670  NQSTTHMEIEPFTILGAVAGLIPFPHHNQSPRNTYQC-AMGKQAIGAIAYNQFNRIDTLL 728

Query: 737  HQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMN 796
            + L YPQRP+   +IS  +         ++   +L  GQNA V V  + GY+ ED+LV+N
Sbjct: 729  YTLVYPQRPM---VISKTI--------QLIHYDKLPAGQNATVVVMSYSGYDIEDALVLN 777

Query: 797  RASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF--GKIQSKIGRVDSLDDDGFP 854
            +AS +RG  R +  R Y AE+       + R  D       GK + +I +  +LD DG  
Sbjct: 778  KASCDRGFGRCQVFRKYSAELQKYPNGKRERIGDPQYEEMEGKPRRRIAKHAALDPDGLA 837

Query: 855  FIGANLQSGDIVIGKYA--DSGA-------------DHSIKLKHTERGMVQKVVLSSNDD 899
             +G  +++G+ ++ K    D+G+             D SI  +  +   + KV++S ++ 
Sbjct: 838  MVGGQVRAGEAMVKKETPLDTGSTGIGNDRGPSEFRDSSISYRIPDPAYIDKVMISQSEK 897

Query: 900  GKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPS 959
                  V  RQ R P LGDKFSS HGQKGV+G +  QE+ PF+ +G+VPDI++NPH FPS
Sbjct: 898  DNMVIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVEQEDLPFSDKGLVPDIIMNPHGFPS 957

Query: 960  RQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLY 1019
            R T G+LLE   GK     G+        +   F +  +  ++E L   GFS  G +   
Sbjct: 958  RMTVGKLLECLTGKASVLDGRPDYG----FGDAFRSHPLKQMSEALVDHGFSWEGKDYFT 1013

Query: 1020 DGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEM 1079
             G TGE + + IF GP +YQRL HM +DK+  R  GP   LTRQP   R R GG++ GEM
Sbjct: 1014 SGITGEPLEAYIFNGPIYYQRLKHMVQDKMHSRARGPRAILTRQPTEGRSREGGLRLGEM 1073

Query: 1080 ERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDS 1139
            ERDCLIA+GA+  L ERL   SD  ++ IC++C            G    +G YC  C S
Sbjct: 1074 ERDCLIAYGASQLLLERLMISSDGTEIDICQQC------------GLFGYKG-YCHTCRS 1120

Query: 1140 GDDIVKANVPYGAKLLCQELFSM--GITLKFDTEF 1172
              ++ K  +PY AKLL QEL SM  G+ L+ + EF
Sbjct: 1121 TKEVTKMTMPYAAKLLVQELISMNVGVRLQMEDEF 1155


>gi|6606121|gb|AAF19073.1|AF107801_1 DNA-dependent RNA polymerase II RPB140 [Stagonosporopsis
            cucurbitacearum]
          Length = 940

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 319/971 (32%), Positives = 479/971 (49%), Gaps = 126/971 (12%)

Query: 201  AEKVFVAQEQICLKRLWV----SNSMGWTVAYKSENKRNRLIVRLVDMSKFED-IKGGEK 255
            +EKV +AQE+     + V       + W    +S  ++   ++   ++   E+ +  G++
Sbjct: 1    SEKVLIAQERSAANIVQVFRKKQGPIPWIAEIRSAVEKGTRLISSFNIKWAENSLASGKR 60

Query: 256  V------LSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADN 309
            +       ++ ++  ++P+ I+F +LG+ SD+EI+  I +   D  +L +L  SI +   
Sbjct: 61   MPGPFAYATLPYIKADVPMAIVFRSLGIVSDEEILGHIVYDRTDTQMLELLKPSIEEGSV 120

Query: 310  KCDEFRKGRNALKYVDK--LIKGTTFPPGESTEECMNTYLFPSLHGTK----QKARFLGY 363
              D      +AL ++ +    +GT     +   + M     P +   +    +KA F GY
Sbjct: 121  VQDR----ESALDFIARRGATQGTKDRRLKFARDIMQREFLPHISQREGQDTRKAYFFGY 176

Query: 364  MVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDR 423
            M+  +LQ   GRR  D+RD F  KRL+LAG L+    ++      K + K LQR +  + 
Sbjct: 177  MIHRMLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRILFLKLTKDVYKYLQRCVENNS 236

Query: 424  TVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTR 483
                ++  + ASI+TNGL  + +TG W    K     +G+   L R     TL  LRRT 
Sbjct: 237  DFN-VQMAVKASIITNGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRTN 295

Query: 484  QQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLF 542
              V   GK+   R  H SHWG +C   TP+G+ CGLVKNL +   VS  S   PI + + 
Sbjct: 296  TPVGRDGKLAKPRQLHNSHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSDATPIADFMG 355

Query: 543  NSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
               M+ L +          KVFV+G W+GV  ++   VS ++  RR   L  ++ + RD 
Sbjct: 356  KRNMQLLEEYDQNQNPDATKVFVNGVWVGVHNNAQQLVSTVQELRRNGTLSYEMSLIRDI 415

Query: 603  LQSEVRIFMDAGRILRPLLVVEN-------------------------------MGKIKS 631
               E +IF DAGR++RPL VV+N                               +G+ + 
Sbjct: 416  RDREFKIFTDAGRVMRPLFVVQNDVTKDDRNHLVFNQDHYNKLVQEQQAQATAGIGE-EE 474

Query: 632  LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYL----------------------- 668
                 Y ++ L+  G+IE +  EEEE        + L                       
Sbjct: 475  KTALTYGWKGLIQDGVIEYLDAEEEETAMIVMSPEDLGEWRDMKQGIPQDARNPQGKDRL 534

Query: 669  --LKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTT 726
              +K   D +   +THCE+  + +LG+   IIPF +H+ + R  YQS     QA+G   T
Sbjct: 535  ARIKPKPDPRIHAYTHCEIHPAMILGICASIIPFPDHNQSPRNTYQS-AMGKQAMGVALT 593

Query: 727  NPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLG 786
            N ++R++T+ + L+YPQ+PL  T   +            L   EL  GQNAIVA+  + G
Sbjct: 594  NYALRMETMMNVLYYPQKPLATTRSME-----------YLKFRELPAGQNAIVAIACYSG 642

Query: 787  YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK------IQS 840
            YNQEDS++MN++S++RG+FRS   R+Y         Q KR   + +  F K      ++ 
Sbjct: 643  YNQEDSVIMNQSSIDRGLFRSLFYRAYTE-------QEKRIGVNVLEQFEKPTRADTLRL 695

Query: 841  KIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH---------------SIKLKHTE 885
            K G  D LDDDG    G  +   DI+IGK A   AD                S  L+ TE
Sbjct: 696  KGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIAADAQEMGQKTSLHTKRDVSTPLRSTE 755

Query: 886  RGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQG 945
             G+V +V+ ++N +G  F  V  R  + P +GDKF+S HGQKG +G     E+ PFT  G
Sbjct: 756  NGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRHEDMPFTRDG 815

Query: 946  IVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQL 1005
            + PD+VINPHA PSR T   L+E  L K       G  +G +  ATPF   +VD I+E L
Sbjct: 816  VTPDLVINPHAIPSRMTIAHLVECLLSK------VGAITGREGDATPFTDVTVDQISELL 869

Query: 1006 HRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPV 1065
              AG+ K G E +Y+G TG+ +R+ IF+GPT+YQRL HM +DK+  R  GP+  LTRQPV
Sbjct: 870  EDAGYQKRGFEIMYNGHTGKKMRTQIFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPV 929

Query: 1066 ADRKRFGGIKF 1076
              R R GG++F
Sbjct: 930  EGRARDGGLRF 940


>gi|398407271|ref|XP_003855101.1| DNA-directed RNA polymerase III subunit RET1 [Zymoseptoria tritici
            IPO323]
 gi|339474985|gb|EGP90077.1| hypothetical protein MYCGRDRAFT_84794 [Zymoseptoria tritici IPO323]
          Length = 1158

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 367/1200 (30%), Positives = 574/1200 (47%), Gaps = 159/1200 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GL+    +SY+ FI   L+K   +  + I+    D  KK   +W    +RF  +
Sbjct: 55   AFLRVKGLIKQHTDSYDYFIDVELKKIVKA-NDFILS---DTDKK---KW----LRFTDI 103

Query: 92   TLDKPSFFAG--NGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
             + KP       +G  E  + P   RL++MTY++   + V F VY ++     K      
Sbjct: 104  RVGKPCRVEDTRSGWVETAVTPNECRLRDMTYAA--PIYVDF-VYPRQSGNVRK------ 154

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGAEK 203
                        T+++IGR+P+M++S  C + G  + +      C  D GGYFI++G EK
Sbjct: 155  ------------TDVMIGRMPMMLRSSKCVLNGRSESEMAWLNECAVDPGGYFIVRGQEK 202

Query: 204  VFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLS 263
            V + QEQ+   R+ V    G   A  + +  N      V    +  +K G   L    L+
Sbjct: 203  VILVQEQLSKNRIIVETFKGVIQASVTSHTAN------VKTKTYVLVKKGHIYLKHNSLN 256

Query: 264  TEIPIWILFFALGVSSDKEIVNLI---DFTCEDCSILNILFASIHDADNKCDEFRKGRNA 320
             +IP+ I+  A+GV SD EI+ L    D   +D    N+  A+I  A  +         A
Sbjct: 257  EDIPVAIMLRAMGVQSDHEILLLAAGNDAQYQDEFAPNLEVAAIEGAFTQ-------EQA 309

Query: 321  LKYVDKLIKGTTF---------PPGESTEECMNTYLFPSLH----GTKQKARFLGYMVKC 367
            L+Y+   +K   F          P ++  E +   + P +       + KA ++ +M + 
Sbjct: 310  LEYIATRLKPDRFGDKWKRNEKTPKQTALEKLAATIIPHVEVEGMNFRPKALYIAFMTRR 369

Query: 368  LLQAYSGRRKCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKRMAKALQ 416
            +L A +  +  D+RD   NKRLELAG++L            R +KV++    K+     +
Sbjct: 370  VLMAMNDPKLVDDRDYVGNKRLELAGQMLALLFEDLFKDFVRMIKVNMDKTLKKPNPTQE 429

Query: 417  RDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTL 476
             D      VR +E     + +T+G+ RA STG W+    R +R +G+   L R + +  L
Sbjct: 430  FD-----PVRIVEQ--GEARITSGMERAISTGNWTLKRFRMDR-AGVTHVLSRLSYISAL 481

Query: 477  VDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE- 535
              + R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL +   ++T+  E 
Sbjct: 482  GMMTRITSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTADDEA 541

Query: 536  PIFEQLFNSGMEKLADDASYSL--GGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELP 593
            P+ + ++  G E +   +   +   G + +F++G    + +    F++  R+ RR   + 
Sbjct: 542  PVRKMMYVLGAEDVTSVSGTEIYGNGAYIIFINGTPAALTRQPKQFLNGFRKFRRMGRIS 601

Query: 594  TQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHG 646
              V I  +   + V I  D GR+ RPL+VVE  GK       ++SL      F   L  G
Sbjct: 602  EFVSIYINHHHNGVHIATDEGRVCRPLVVVEK-GKSKVTVRFLESLRKGTMDFDDALSRG 660

Query: 647  IIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHA 706
            I+E +   EE D      I    K I++      TH E++   +LG   G+IP+ +H+ +
Sbjct: 661  IVEYLDVNEENDS----NIAVYEKQIDEHT----THLEIEPFTILGAVAGLIPYPHHNQS 712

Query: 707  RRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHIL 766
             R  YQ+     QAIG    N   R+DTL + + YPQ+P+  T   +           ++
Sbjct: 713  PRNTYQACL-PPQAIGAIAYNQFTRIDTLLYLMVYPQKPMVTTRTIE-----------LV 760

Query: 767  PRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKR 826
               +L  GQNA+VAV  + GY+ ED+LV+N+AS +RG  R +  +          M +K 
Sbjct: 761  KYDKLPAGQNAVVAVMSYSGYDIEDALVLNKASCDRGFGRCQVFKKI-------SMPLKS 813

Query: 827  RSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTER 886
              +      G   +K  R   +  DG   +G+ ++S D+ + K        +I  K  + 
Sbjct: 814  YGNGYQDRLGDRDAKNTRHRKIGKDGLVEVGSEIESSDMYMLKEQPMNQASAIPQKEQKW 873

Query: 887  GMVQ------------KVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLE 934
              +             KV +++N+       +  RQ R P +GDKFSS HGQKGV+G L 
Sbjct: 874  SPMHMSYKLPDPCYADKVQITTNEANSTIIKIQTRQTRRPEIGDKFSSRHGQKGVVGLLA 933

Query: 935  SQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFA 994
             Q + PF+  G++PDI++NPH FPSR T G++LE   GK       G+ +G + Y T F 
Sbjct: 934  EQVDMPFSDSGVIPDIIMNPHGFPSRMTVGKMLELVSGKA------GVLAGKQEYGTAFG 987

Query: 995  TPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNT 1054
               V+ +   L + GFS  G + L  G TGE +   +F GP +YQ+L HM +DK+  R T
Sbjct: 988  GSKVEDMGATLVKHGFSYSGKDCLTSGITGESLPMYVFFGPIYYQKLKHMVQDKMHSRAT 1047

Query: 1055 GPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKN 1114
            GP   LTRQP   R R GG++ GEMERDCLIA+GA+  L ERL   SD++++ +C+ C  
Sbjct: 1048 GPRAILTRQPTEGRSRQGGLRLGEMERDCLIAYGASQLLLERLMISSDAHEVDVCQNC-- 1105

Query: 1115 VANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI--TLKFDTEF 1172
                       G      +C+ C S   +V+  +PY AKLL QEL SM +  +L+   EF
Sbjct: 1106 -----------GMMGYNNWCQSCSSSRSVVRMTMPYAAKLLIQELMSMNVKASLQLADEF 1154


>gi|384253175|gb|EIE26650.1| DNA-directed RNA polymerase III, subunit 2 [Coccomyxa subellipsoidea
            C-169]
          Length = 1170

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 382/1235 (30%), Positives = 578/1235 (46%), Gaps = 169/1235 (13%)

Query: 8    FTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIV 67
              DP+ L    +E    +  +   +F    GLV   I+S+N FI   ++K   + G   V
Sbjct: 26   LADPSKLTHPIKEVADKY--ELLPAFLKVRGLVKQHIDSFNYFINQEIKKIVHAKGNEKV 83

Query: 68   EPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKV 127
                DP+      ++Y  +  G+  +++     G       + P+  RL++MTY++ + V
Sbjct: 84   TCDTDPNFF----FKYTDIFVGRPQVEEDYITTG-------ITPQACRLRDMTYAAPISV 132

Query: 128  KVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG----- 182
             V+   YT+          G+E  ++K    +    ++IGR+P+M++SD C +KG     
Sbjct: 133  DVE---YTR----------GKEIVVRKG--KNGVGAVVIGRMPLMLRSDRCVLKGKSEAQ 177

Query: 183  -VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVS-NSMGWTVAYKSENKRNRLIVR 240
              E G+C  D GGYF++KGAEKV + QEQ+   R+ +  +S G   A  + +   R    
Sbjct: 178  LAELGECPLDPGGYFVVKGAEKVILIQEQLSKNRIIIDLDSKGQVTASVTSSTHER---- 233

Query: 241  LVDMSKFEDIKG--GEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILN 298
                SK   + G  G+  L     + ++ +  +  A+GV SD+EI+ L+   CE   +  
Sbjct: 234  ---KSKTNIVLGRKGQLCLRHNAFTEDVNMVAVLRAMGVESDQEILALVG--CEP-GLAA 287

Query: 299  ILFASIHDADNKCDEFRKGRNALKYVDKLIKG---------TTFPPGESTEECMNT---Y 346
            +L  ++ +A       R+   AL+Y+   +K          +     E+ +   N    +
Sbjct: 288  LLAPTLQEAKAMGLFIRQ--QALEYLGSRVKAGKQQYSSRRSRSKVDEARDILANVVVCH 345

Query: 347  LFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKR-----------LELAGEL 395
            +    +  +QK  ++  M++ ++ A       D+RD + NKR            E   + 
Sbjct: 346  IPVPQYDFQQKVIYMAVMMRRMIAAMLDSTLIDDRDYYGNKRLELAGGLLALLFEDLFKR 405

Query: 396  LERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFK 455
            +  ELK    +   +  +A Q D   +         L   +++ G+  A S+G W+    
Sbjct: 406  MNNELKRTADNTLSKANRASQFDAAKN---------LHVEMISQGMESAISSGNWTIRRF 456

Query: 456  RTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGE 515
            R ER  G+   L R + +  L  + R   Q + T KV   R   PS WG +C   TP+GE
Sbjct: 457  RMER-KGVTQVLSRLSFIAALGMMTRITSQFEKTRKVSGPRALQPSQWGMLCPADTPEGE 515

Query: 516  NCGLVKNLGVTGLVSTSILE-PI--FEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGV 572
            +CGLVKNL +   V+T   E P+     L  +    L     YS  G   VF++G  +G+
Sbjct: 516  SCGLVKNLALMTHVTTDEEEAPLARLAHLLGTQPATLVSGFEYSSRGVAMVFLNGSILGI 575

Query: 573  CKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE-------- 624
             +     V E RR RR   +   V I     Q  V I  D GR+ RPL++ +        
Sbjct: 576  HRRPKRLVKEFRRLRRAGRVGEFVSIFLQ--QDSVYIASDGGRVCRPLIICDRGVPRVTS 633

Query: 625  -NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHC 683
             +  K+KS E   + F   L +G++E +   EE +   A          E    +  TH 
Sbjct: 634  AHTAKLKSGE---WGFSDFLRNGLVEYLDVNEENNALIAL--------YERNCGVATTHL 682

Query: 684  ELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQ 743
            E++   +LG+  G+IP+ +H+ + R  YQ      QA+G    N    +DTL + L YPQ
Sbjct: 683  EIEPFTVLGVVAGLIPYPHHNQSPRNTYQC-AMGKQAMGNIAYNQLNVMDTLLYLLVYPQ 741

Query: 744  RPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERG 803
            RPL  T   + +G    G            GQNA VAV  + GY+ ED+++MNRASL+RG
Sbjct: 742  RPLLTTKTIELVGFDKLG-----------AGQNATVAVMSYSGYDIEDAIIMNRASLDRG 790

Query: 804  MFRSEHIRSYKAEVDNKEMQVKRRSSDDMVN--FGKIQSK-IGRVDSLDDDGFPFIGANL 860
              R   +R Y   +   +     RS D +V       QSK  GR   LD+DG    G   
Sbjct: 791  FGRCIVLRKYGTVLKKHQ----NRSQDTVVAAPLPPGQSKPTGRHKLLDEDGLAAPGEIA 846

Query: 861  QSGDIVIGKY-------------------ADSGADHSIKLKHTERGMVQKVVLSSNDDGK 901
              G+I+I K                    A   A  S K    E  +V KV+L++NDDG 
Sbjct: 847  SPGEILINKQVPMSTKDPLPHGMVSLPPSAYKPAPVSWKGPPGESCIVDKVLLTNNDDGH 906

Query: 902  NFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQ 961
                  +R  R P +GDKFSS HGQKGV+G + +QE+ PF+ +GI PD+++NPH FPSR 
Sbjct: 907  TVIKTLMRHTRRPEVGDKFSSRHGQKGVVGSIVAQEDMPFSERGICPDLIMNPHGFPSRM 966

Query: 962  TPGQLLEAALGKGIAALGKGICSGLKRYATPFATPS-----VDAITEQLHRAGFSKWGTE 1016
            T G++LE    K        + SG   Y T F   +     VD+I++ L   GFS  G +
Sbjct: 967  TVGKMLELIGSKA------AVQSGRFHYGTAFGESTGLADNVDSISKTLVEHGFSYSGKD 1020

Query: 1017 RLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKF 1076
            +L  G +GE + +LIF+GP +YQ+L HM  DK+  R  GP   LTRQP   R R GG++ 
Sbjct: 1021 QLTSGSSGEPLEALIFMGPVYYQKLKHMVLDKMHARARGPRVVLTRQPTEGRSRDGGLRL 1080

Query: 1077 GEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRI 1136
            GEMERDCLI +GA+  L ERL   SD +Q+H+C  C  +       VG         C +
Sbjct: 1081 GEMERDCLIGYGASMLLLERLMISSDQFQVHVCNHC-GLLGYFDANVG---------CAV 1130

Query: 1137 C---DSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
            C    S DD+    +PY  KLL QEL SM I  + 
Sbjct: 1131 CPSTKSSDDMSTLKLPYACKLLFQELQSMNIVPRL 1165


>gi|407043800|gb|EKE42160.1| DNA-directed RNA polymerase, beta subunit domain containing protein
            [Entamoeba nuttalli P19]
          Length = 1141

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 354/1175 (30%), Positives = 560/1175 (47%), Gaps = 130/1175 (11%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+S+N FI   +++   +  +   +   DP        R+  +++  V
Sbjct: 48   AFVKARGLVRQHIDSFNYFIDEEIKQIVKANDKITCDA--DP--------RFY-LKYLDV 96

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             +D P         +  + P+  RL++++Y++ +   +Q+                R+  
Sbjct: 97   KVDTPCVEVDY--KKESITPQECRLRDISYTAPILANIQYT---------------RDNK 139

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
            I ++ ++       IG +P+M++S  C +        +  G+C  D GGYFI+KG E+V 
Sbjct: 140  IFRKTVT-------IGYMPIMLQSKHCVLYNNTFEEFIRHGECPMDPGGYFIVKGVERVI 192

Query: 206  VAQEQICLKRLWVSNS----MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYF 261
            ++QEQ+   R+ +  +    +  +V   +   ++R +V L         K G+  L    
Sbjct: 193  LSQEQMSKNRILIETTTQGFLSASVTSATHEVKSRTVVYL---------KKGKLYLKHNS 243

Query: 262  LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNAL 321
            L+ ++PI I+  A+G+ SD E +  +        I +I      D  N+ +  R   N L
Sbjct: 244  LTEDLPIMIVIKAMGMESDMEFLQFVGNHYTSKMINSIEECKAKDVLNQREALRYIGNHL 303

Query: 322  K-YVDKLIKGTTFPPGESTEECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRR 376
            K Y  +    +  P  E   + +   + P +    +  K K  ++  MV  +L+A     
Sbjct: 304  KIYTGQKGYISKRPKIEEARDVLANLVLPHIEVNRYNFKTKIIYIALMVNWILKA-DETG 362

Query: 377  KCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYY--LDA 434
            + D++D + NKR+ELAG+L+    +         +  A  + L         +    +  
Sbjct: 363  ELDDKDYYGNKRMELAGQLMSLLFEDLFKQFNTDLQNAANKGLTKKSRSETFDIIKCISP 422

Query: 435  SILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGD 494
              +T GL  + STG W       +R +GI   L R + +  L  + R     + T KV  
Sbjct: 423  HRITQGLIHSLSTGNWVLKRFNMDR-AGITQVLSRLSYISALGMMTRLNSHFEKTRKVSG 481

Query: 495  ARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGME--KLAD 551
             R    S WG +C   TP+GE+CGLVKN  +   V+T S  + I   LFN G+E   L  
Sbjct: 482  PRSLQGSQWGMVCPSDTPEGESCGLVKNFSLLTEVTTDSNDQAIVTMLFNLGVEDANLIS 541

Query: 552  DASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFM 611
                +    + VF++G  +G+ ++ + F+ + R  RR   L  +V +  +E+Q  + I  
Sbjct: 542  GDEVNAPSSYLVFLNGQLLGIHQNPIHFLKQCRLLRRHGRLGKKVSLHLNEMQRSINISS 601

Query: 612  DAGRILRPLLVVENM-GKIKSLEGKNY-----TFQALLDHGIIELVGTEEEEDCCTAWGI 665
            D GR+ RPL+VVEN   KI   E ++      + +  L  G+IE +   EE +   A   
Sbjct: 602  DGGRVCRPLIVVENCKSKIGPKEIRDIVEGFKSIEDCLKEGLIEYLDVNEENNSYIAIN- 660

Query: 666  KYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPT 725
                   E++     TH E+D   +LG+  G+IP+ +H+ + R  YQ      QAIG   
Sbjct: 661  -------ENEINEHTTHLEIDPLSILGVVAGLIPYPHHNQSPRNTYQCA-MGKQAIGTIG 712

Query: 726  TNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHL 785
             N   RVDTL + L+YPQ P+ +T   D           ++   +L  GQNA+VAV  + 
Sbjct: 713  YNQFKRVDTLLYLLYYPQIPMVKTKTID-----------MINFDKLPAGQNAMVAVMSYS 761

Query: 786  GYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRV 845
            GY+ ED+ ++N+AS++RG  R    R  KAE   K  + K  + D +V     + ++ + 
Sbjct: 762  GYDIEDASILNKASIDRGYGRCFVYR--KAECVIK--KYKNGACDRVVCPTDEERELPKY 817

Query: 846  DSLDDDGFPFIGANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQ 890
             SLD DG    G+ L  G I + K                 D      +  K      V 
Sbjct: 818  KSLDFDGVCSPGSILNPGSIYLNKQVPLNTIGTLTTDTIKDDEYRREVLTYKGPVPSYVD 877

Query: 891  KVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDI 950
            +V+++SN++      +SLR  R P LGDKFSS HGQKGV G + +QE+ PFT  GI PD+
Sbjct: 878  QVLITSNEEEPLKVKISLRTSRRPELGDKFSSRHGQKGVTGLIVNQEDMPFTNTGICPDV 937

Query: 951  VINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGF 1010
            ++NPH FPSR T G+LLE   GK       G+  G  +Y T F    +D +++ L  AG+
Sbjct: 938  IMNPHGFPSRMTVGKLLELVSGKA------GLMDGSFKYGTAFGGDKLDDMSKILIEAGY 991

Query: 1011 SKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKR 1070
            S  G E LY G TG+ + + IFIGP +YQ+L HM  DK+  R  GP   LTRQP   R R
Sbjct: 992  SYDGKEELYSGITGKALHAYIFIGPVYYQKLKHMVLDKMHARARGPKSSLTRQPTEGRSR 1051

Query: 1071 FGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVR 1130
             GG++ GEMERDCLI +GA   L ERL   SD++++ +C+KC  + +             
Sbjct: 1052 DGGLRLGEMERDCLIGYGATNLLLERLMYSSDAFKVCVCKKCGLIGH------------- 1098

Query: 1131 GPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
              YC+ C+S        +PY  KLL QE+ SM + 
Sbjct: 1099 SGYCKFCESSLYCTNVTMPYACKLLFQEMQSMNVV 1133


>gi|313221111|emb|CBY31939.1| unnamed protein product [Oikopleura dioica]
          Length = 1110

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 359/1171 (30%), Positives = 555/1171 (47%), Gaps = 143/1171 (12%)

Query: 28   KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMR 87
            K   +F    GLV   ++S+N  +  GLQK   +   T V+  +         W Y    
Sbjct: 39   KLVPAFLETRGLVKQHLDSFNYLLTQGLQKIIKANARTDVDQNFF--------WNY---- 86

Query: 88   FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
               + +D P    G   +   + P   RL++MTYS+ +KV V +       V  ++ +  
Sbjct: 87   -DHIYVDPPDVEYGMRSEA--ITPHECRLRDMTYSAPIKVDVTY-------VRDNQIRKA 136

Query: 148  REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGA 201
            R               ++IGR+P+M++S  C +  + +       +C  D GGYF++KGA
Sbjct: 137  R--------------GLVIGRMPIMLRSARCVLANMSQEQFFKAKECPLDPGGYFVVKGA 182

Query: 202  EKVFVAQEQICLKRLWVSNSMG--WTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
            EKV + QEQ    R+ V       +    KS++        L+       +K  +     
Sbjct: 183  EKVLLMQEQAVSNRILVEKDKTGMFCAVVKSKSDTANTQTNLIQSKNKIYVKQNK----- 237

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
              L   + + +LF ALG+  D+EI  LI    ED S L +L  S+ +      E      
Sbjct: 238  --LREPVNVVVLFKALGIERDQEIAELI--ATED-STLALLAPSLFECQQL--EIFSQNQ 290

Query: 320  ALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQ--AYSGRR- 376
            A+KY++K I     P   S  +  + +   +    +Q+     ++V  LL    Y  +R 
Sbjct: 291  AMKYLEKTIMRIQNPI-VSRSQMQSRFQVRTPRNREQEVH--NWLVSTLLVNVPYCYKRR 347

Query: 377  ---KCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLD 433
               K D+RD + NKR++LAG+L+    + H  +    + + + + L   +T + ++    
Sbjct: 348  GMIKADDRDYYGNKRIQLAGDLISLLFEEHFKNFNDELRRTIGKKL-EKKTAQVVDVISS 406

Query: 434  ASILTN----GLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLV--DLRRTRQQVQ 487
               L N     +  A  TG W+    + +R  GI   L R + +  ++   + R +   +
Sbjct: 407  MKSLQNKITLAMEAAIQTGNWNLKRFKMDR-KGITEILNRMSFISIILVGTMTRIKGHFE 465

Query: 488  YTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGM 546
             T KV   R    S WG +C   TP+G  CGLVKN+ +   V+T    +PI   L N G+
Sbjct: 466  KTMKVTGPRALQGSQWGMLCPSDTPEGAQCGLVKNMALLSHVTTFEDDKPIHRLLINLGV 525

Query: 547  EKLADDASYSL-GGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQS 605
            E+ +  + Y L G  + VF++G  +G  ++  S    ++  RR   LP  V +   E   
Sbjct: 526  EETSTLSGYDLHGANYLVFLNGALVGATRNPKSLTRTVQLIRRAGRLPEFVSVYVSEEHR 585

Query: 606  EVRIFMDAGRILRPLLVVENMGKIKS--------LEGKNYTFQALLDHGIIELVGTEEEE 657
             V +  D GR+ RP ++VEN G+ K         LEG+   F   + +G+IE +   EE 
Sbjct: 586  AVYLASDGGRLTRPCIIVEN-GRPKVTQKHINALLEGR-VKFPDFVKNGLIEYLDVNEEN 643

Query: 658  DCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHS 717
                A   + + K        K TH E++   LLG+  G+IP+ +H+ + R  YQ     
Sbjct: 644  SALIAVYERDITK--------KHTHLEIEPFALLGVCAGLIPYPDHNQSPRNTYQC-AMG 694

Query: 718  SQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNA 777
             QA+G    N   R+D+  + L YPQRPL +T   + +G             +L  GQNA
Sbjct: 695  KQAMGTIAMNQRERIDSCLYNLVYPQRPLVKTRTIELIG-----------FEQLPAGQNA 743

Query: 778  IVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK 837
             VAV  + GY+ ED+LV+N+AS++RG  R    R+ K ++  +   V+  + ++ ++   
Sbjct: 744  TVAVMSYSGYDIEDALVLNKASVDRGYGRCLVYRNEKTQLQRRGTLVE--TIEERIDGPA 801

Query: 838  IQSKIG---RVDS-LDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKVV 893
            + +K G   R D  LD DG       +  G+ V  +         I +  TER M+    
Sbjct: 802  LDAKSGEKIRADECLDMDGI------VAPGERVKDRAPTMAKSQPIHIG-TERVMI---- 850

Query: 894  LSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVIN 953
              S D       +S RQ R P LGDKFSS HGQKGV G +  QEN PF   G+ PD+++N
Sbjct: 851  --SEDATWRMVKLSYRQTRRPELGDKFSSRHGQKGVTGLIVPQENMPFNEIGMCPDVIMN 908

Query: 954  PHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKW 1013
            PH +PSR T G+L+E    K       G  SG   Y T F   + + + + +   GF+ +
Sbjct: 909  PHGYPSRMTVGKLMECIGSKA------GALSGKFHYGTAFGGNTTEEMAQTMLDYGFNYY 962

Query: 1014 GTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGG 1073
            G + L  G TGE + + IF+GP +YQ+L HM  DK+  R TG VH LTRQP+  R + GG
Sbjct: 963  GKDLLMSGETGEPLEAYIFMGPIYYQKLRHMVMDKMHARATGKVHNLTRQPLEGRAKDGG 1022

Query: 1074 IKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPY 1133
            ++ GEMERD L+A+GA+  L+ER F  SD Y + IC  C             G      +
Sbjct: 1023 LRLGEMERDALLAYGASNLLNERFFYSSDKYSVEICGNC-------------GLHGYSGW 1069

Query: 1134 CRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
            CR+C +G+ +   N+PY  KLL QELFSM I
Sbjct: 1070 CRVCRTGEHMASINMPYACKLLLQELFSMNI 1100


>gi|161899447|ref|XP_001712950.1| RBP2 DNA-directed RNA polymerase II second largest subunit
            [Bigelowiella natans]
 gi|75756444|gb|ABA27338.1| RBP2 DNA-directed RNA polymerase II second largest subunit
            [Bigelowiella natans]
          Length = 1159

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 359/1204 (29%), Positives = 580/1204 (48%), Gaps = 137/1204 (11%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQ- 90
            +FF    ++  QI S+N+FI+   Q   D     +++  Y  S K           + + 
Sbjct: 15   TFFRGNSIIKQQIISFNDFIRKESQHIIDKIPNLVIQISYKNSNKIVNRILLLKQLYTEK 74

Query: 91   ---------VTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTS 141
                       L +PS+  G    E ++ P  +RL+N+TYSS    KV+ QV+       
Sbjct: 75   PRIIKTRELYNLVEPSYDEG----ELNISPNKSRLRNITYSS----KVRIQVF------- 119

Query: 142  DKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGY 195
            D+     +  ++K+V++     I IG+ P M+KSD C++    +       +C FD GGY
Sbjct: 120  DEITDKHDANLKKKVVNKSKKFIYIGKFPCMIKSDTCYLNNFSEISLARNDECPFDEGGY 179

Query: 196  FIIKGAEKVFVAQEQICLKRLWV--------SNSMGWTVAYKSE--NKRNRLIVRLVDMS 245
            FII G EKV VAQE++   ++++        +  M    +Y S   N+   + ++LV   
Sbjct: 180  FIINGNEKVLVAQERLVKNKVYIFSKIFDKKTRVMAQCRSYDSSLYNQGYMVYLKLVTDK 239

Query: 246  KFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIH 305
                 +  E  + +  L  EIP+ IL   LG  +DKEI+N I     +   LN+L+ S  
Sbjct: 240  SNNPNQCSEITVKIASLRAEIPLVILLKFLGFKNDKEIINSIFKNNSNSKKLNMLYNSFL 299

Query: 306  DADNKCDEFRKGRNALKY-VDKLIKGTT---FPPGESTEECMNTYLFP----SLHGTKQK 357
                   + +   +AL+Y VD+    +      P ++  E ++  L P    S++   +K
Sbjct: 300  GVT----KVQTISHALRYIVDRSFSKSNNKKLDPEKTAREIIDKKLLPHMGTSINSRFRK 355

Query: 358  ARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAK 413
              F+ YM   L+   +   + D++D ++NKR++++G L        +K  I   + ++ K
Sbjct: 356  GLFICYMAHRLINTLNEIEQPDDKDSYKNKRVDISGHLFSSLFNNLIKRSIKDVKNQLLK 415

Query: 414  ALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPL 473
             +++    D T   +E    ++ILTNG   + +TG W       +  +G+   L R + L
Sbjct: 416  KVKK---SDAT--ELEELFSSNILTNGFRYSLATGNWIID-GMLDYKTGVSQVLNRMSYL 469

Query: 474  QTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTS- 532
              +  L R        GK+ D R  H S+WG +C + TP+G+ CG+VKN      V+ S 
Sbjct: 470  SMISHLSRLNSSYTSNGKILDIRRVHTSYWGIVCPVETPEGQTCGIVKNFAFLAHVTNSH 529

Query: 533  -ILEPIFEQL--------FNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSEL 583
             I + I + L        F   M K   D          +FV+G WIG   +  S +  L
Sbjct: 530  HIQKNIIQFLKKIMIKNSFTKPMIKTKKDKP-----DISIFVNGSWIGNTFEYFSLMKYL 584

Query: 584  RRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKI---------KSLEG 634
               RR++ +P  V I  +E    + I+ D GRI RPL V++N             K ++ 
Sbjct: 585  ITLRRQEIIPFDVSIVFNEKNKRIFIWSDPGRIKRPLFVLKNSNSFFNHSIEKIAKKIKD 644

Query: 635  KNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIED-----KKPIKFTHCELDMSF 689
              + +   + + I+E + TEE E+           + I D     KK I F+  E+  S 
Sbjct: 645  NFHRWYFYIKNSIVEYLDTEEIENIVIKLNYYNNTELIVDQTQIYKKMINFS--EIHASS 702

Query: 690  LLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRT 749
            +LG+S   +PF+ H+ + R  YQS     QAIG   +N  +R DT  + L   QRPL  T
Sbjct: 703  ILGVSASQVPFSQHNQSPRNTYQSS-MGKQAIGINYSNFQLRYDTQINILESNQRPLVFT 761

Query: 750  MISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEH 809
            +   CL              E+ +G N I+A+  + G+NQEDSL++N +S+ERG+FR+  
Sbjct: 762  IQKLCLRGQ-----------EMPSGINTIMAILSYSGFNQEDSLIINHSSVERGLFRTII 810

Query: 810  IRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGK 869
             +++ AE +N  +       + ++   +++SK   +  LD DG   I   +   D++I K
Sbjct: 811  YKTF-AERENTNV-------NGIIEKIELESKSSNLFGLDIDGTRKIETLVNGDDVLISK 862

Query: 870  Y------ADSGAD--HS-IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKF 920
                    D+  +  HS +KL    +G+V  ++ S ++ G     V +R +R P +GDKF
Sbjct: 863  TIKLTGKGDTKVNTIHSDLKLPLNSQGVVDSIMYSLDEGGYKIIKVRIRSIREPVIGDKF 922

Query: 921  SSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGK 980
            SS+HGQKG++G+   Q   P T   + PD+++NPHA PSR T G ++E  + K  +  GK
Sbjct: 923  SSLHGQKGIIGYSYRQSLLPTTATSVTPDLIMNPHAIPSRMTIGHMIEMLMSKVSSHSGK 982

Query: 981  GICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQR 1040
                     AT F+  ++  I   L + G   +G E++  G  G++++  I +GP +YQR
Sbjct: 983  ------LGDATAFSEGNIGKIIGHLSKFGIHHFGLEKMISGFNGDILQKSILVGPIYYQR 1036

Query: 1041 LIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTL 1100
            L HM  DK   R+ GP   LTRQPV  + R GG++FGEMERDC+++HG++  L ERL   
Sbjct: 1037 LKHMVVDKFFSRSRGPYEILTRQPVEGKTREGGLRFGEMERDCVLSHGSSLFLKERLMDE 1096

Query: 1101 SDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELF 1160
            SD +++HIC K                K +  +  I  S   I +  +PY  KLL QEL 
Sbjct: 1097 SDKFRVHICEKSG-------LFCPANLKTQTFWSTIYHS-KSICQIFIPYACKLLFQELI 1148

Query: 1161 SMGI 1164
            +M I
Sbjct: 1149 AMCI 1152


>gi|346323848|gb|EGX93446.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Cordyceps
            militaris CM01]
          Length = 1164

 Score =  471 bits (1212), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 395/1241 (31%), Positives = 580/1241 (46%), Gaps = 177/1241 (14%)

Query: 8    FTDPTSLCD----LGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFG 63
             TDP S  +    L   FLK   R  A             I+SYN F++  ++    +  
Sbjct: 21   LTDPISTKEDKFQLLPAFLKVKVRLTA----------DMHIDSYNFFVEQEIKDIVRA-- 68

Query: 64   ETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFF-AGNGGDEHDMFPRHARLQNMTYS 122
               +    D +   E   R    RF  + +D+P            D+ P   RL++MTY+
Sbjct: 69   NRTIRSDVDSNFWLECRLR----RFTDIRVDRPQRQDYKEAKSSTDVTPMECRLRDMTYA 124

Query: 123  SRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG 182
            + + V +   VY +     DK K  R              N+ +GR+PVM++S  C + G
Sbjct: 125  APILVDI---VYIR-----DKQKIIRR-------------NVSLGRMPVMLRSSKCRLSG 163

Query: 183  VEKGD------CDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNR 236
                +      C  D GGYFII G EKV + QEQ+   R+ V +           +++NR
Sbjct: 164  ANNSEMEKMNECPLDPGGYFIINGTEKVILIQEQLSKNRVIVES-----------DEKNR 212

Query: 237  LIVRLVDMSKFE-------DIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLI-- 287
            +I   V  S  E        +K    VL    L   IPI I+  ALG  +D EI+ L+  
Sbjct: 213  IISASVTSSTHERKSKTNVTLKKDRIVLVHNVLVEGIPIVIVLKALGGLTDYEIMQLVAG 272

Query: 288  -DFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTT----FPPG---EST 339
             D   +D  ++N       D   K   F +   AL+Y+   +K  +    F P     + 
Sbjct: 273  ADGRYQDEFLINF------DEATKAGVFTQ-HQALEYIGSRVKMGSRRGQFGPQVRRNNV 325

Query: 340  EECMNTYL-----FPSLHGTK--QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELA 392
            EE ++           + G     KA ++  M + +L A    +  D+RD   NKRLELA
Sbjct: 326  EEGLDALANLIIAHVPIEGLDFYPKAIYVAMMTRKVLMAAQDSKLVDDRDFVGNKRLELA 385

Query: 393  GELLER-----------ELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGL 441
            G+LL             E+K+ I    K+  +A+  D      V  I  +  A+ +  G+
Sbjct: 386  GQLLSLLFEDLFKRFTVEVKMSIDKFLKKNNRAVPLD-----AVNMISNH--ANNIGMGI 438

Query: 442  SRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPS 501
            +RA  TG WS       R +G+   L R + +  L  + R   Q + T KV   R   PS
Sbjct: 439  NRAIQTGNWSVKRFNMNR-AGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPS 497

Query: 502  HWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLF--NSGMEKLAD--DASYS 556
             WG +C   TP+GE CGLVKNL +   ++T++ E P+   +F  + G+E + +   A   
Sbjct: 498  QWGMLCPSDTPEGEACGLVKNLALMTHITTNVDEDPVKRWVFTLDVGVEPIRNFSGAEMH 557

Query: 557  LGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRI 616
              G + + ++G    + +    F S+ R  RRR  +   V I  +   + V I  D GRI
Sbjct: 558  REGSYIIHINGTPFALTRYPKRFCSKFRTMRRRGWISPFVSISINLHFNAVHIAADEGRI 617

Query: 617  LRPLLVVEN-MGKIKS-----LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLK 670
             RP ++V+N + K+K      L+  + TF   L +G++E +   EE+D         L+ 
Sbjct: 618  CRPYIIVKNGVQKLKPEHLRLLQLGSVTFDDFLRNGVVEYLDVNEEQDA--------LVT 669

Query: 671  DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSI 730
              EDK  +  TH E++   +LG   G+IPF +H+ + R  YQ      QAIG    N   
Sbjct: 670  IYEDKITMSTTHLEIEPFTILGAVAGLIPFPHHNQSPRNTYQC-AMGKQAIGAIAYNQFN 728

Query: 731  RVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQE 790
            R+DTL + L YPQRP+   +IS  +    Y         +L  GQNA V V  + GY+ E
Sbjct: 729  RIDTLLYTLVYPQRPM---VISKTIQLVNYD--------KLPAGQNATVVVMSYSGYDIE 777

Query: 791  DSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK--IQSKIGRVDSL 848
            D+LV+N+AS++RG  R +  R Y  E+  K    +R    D VN G    + +  +  +L
Sbjct: 778  DALVLNKASIDRGFGRCQVFRKYTTEL-QKYPNGRRERIGDPVNEGDGDQRRRSEKHKAL 836

Query: 849  DDDGFPFIGANLQSGDIVIGKYA-----------DSGA----DHSIKLKHTERGMVQKVV 893
            DDDG   +G  + SG  +I K             D G+    D ++  +  +   + KV+
Sbjct: 837  DDDGLAMVGCRVFSGQSMIKKETPLDMTTTGIGLDRGSSDFRDSAVNYRIPDPAYIDKVM 896

Query: 894  LSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVIN 953
            +S  +       V  RQ R P LGDKFSS HGQKGV+G +   E+ PF   G+ PDI++N
Sbjct: 897  ISHTEKDTTVVKVQTRQTRRPELGDKFSSRHGQKGVVGIIVDHEDMPFADNGLTPDIIMN 956

Query: 954  PHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKW 1013
            PH FPSR T G+LLE   GK     G+        +   F +  V+ +++ L   GFS  
Sbjct: 957  PHGFPSRMTVGKLLECLTGKASIIHGRPDYG----FGDAFRSHPVEEMSQVLLDHGFSWE 1012

Query: 1014 GTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGG 1073
            G +    G TGE + + IF GP +YQRL HM +DK+  R  GP   LTRQP   R R GG
Sbjct: 1013 GKDYFTSGLTGEPLEAYIFNGPIYYQRLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGG 1072

Query: 1074 IKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPY 1133
            ++ GEMERDCLIA+GA+  L ERL   SD   + IC++C            G    +G Y
Sbjct: 1073 LRLGEMERDCLIAYGASQLLLERLMISSDGVVIDICQQC------------GLFGYKG-Y 1119

Query: 1134 CRICDSGDDIVKANVPYGAKLLCQELFSM--GITLKFDTEF 1172
            C+ C S  ++ K  +PY AKLL QEL SM  G+ L+   EF
Sbjct: 1120 CQTCKSTREVTKMTMPYAAKLLVQELISMNVGVRLQLADEF 1160


>gi|209876614|ref|XP_002139749.1| DNA-directed RNA polymerase, beta subunit family protein
            [Cryptosporidium muris RN66]
 gi|209555355|gb|EEA05400.1| DNA-directed RNA polymerase, beta subunit family protein
            [Cryptosporidium muris RN66]
          Length = 1219

 Score =  471 bits (1212), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 363/1258 (28%), Positives = 572/1258 (45%), Gaps = 207/1258 (16%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
            F    GLV H I SYN F+   ++    +     ++   DPS   E    +   R G   
Sbjct: 50   FLKTEGLVKHHIESYNYFVTVDIRNIIRAHSNRFIKSDVDPSFFIE----FLDARVGMPK 105

Query: 93   LDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYI 152
            L++            D+ P   R++++TY++ + V V +                    +
Sbjct: 106  LEENMVTI-------DLTPMMCRMRDITYAAPIYVDVDY--------------VRGNNVV 144

Query: 153  QKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFV 206
            +K+       N+ IGRIPVM++S +C + G      +   +C  D GGYF++KG EKV +
Sbjct: 145  RKK-------NVEIGRIPVMLRSKVCILYGKTPLEMINLSECPHDPGGYFVVKGTEKVIL 197

Query: 207  AQEQICLKRLWVS-----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYF 261
             QEQ+   R+ V      N      +  +E+K   L+V           K G+  L    
Sbjct: 198  MQEQLSKNRIIVELDNKHNYCATVTSTTAESKSRTLVV----------YKNGKLYLRHNS 247

Query: 262  LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNAL 321
             + +IP+ I+  A+G+ +++E+  +I         +      +H      ++    R AL
Sbjct: 248  FTDDIPLCIVLKAMGIETEQELFQVIGNKSYHYEGIITSLQDVH-----IEKIITQRQAL 302

Query: 322  KYVDKLIKGT-----------------TFPPGESTEEC---MNT-----YLFPSLHGT-- 354
            +++ K +K                   T+     +EE    MNT      L   ++G   
Sbjct: 303  QFMSKRMKSKVRMSFGFTGGRPNRHNPTYTEQNRSEEALDRMNTSNADNTLVRQVNGIED 362

Query: 355  --------------------KQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGE 394
                                + KA  L  M + ++ A   +   D++D + NKR+ELAG+
Sbjct: 363  VLETLNRVVLSHVGTIYGDLRPKALILCLMARRVIDASENQSLLDDKDYYGNKRIELAGQ 422

Query: 395  LL----ERELKVHIAHARKRMAKALQRDLYGDRTVRPIEY--------------YLDASI 436
            L+    E   K   +  +K++ + L R          +                 L   I
Sbjct: 423  LISILFEDLFKRFASLTKKQIDQTLVRYFQTKDNSSKVTSGKEDTNSNYPDCFRNLPTDI 482

Query: 437  LTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDAR 496
            +T G+  A STG WS    R ER SG+   L R + +  L  + R   Q +   KV   R
Sbjct: 483  ITRGMQTALSTGNWSIKRFRMER-SGMTQVLSRYSYISALGIMTRVDSQFEKARKVSGPR 541

Query: 497  YPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTS-ILEPIFEQLFNSGMEKLAD---- 551
               PS WG +C   TP+GE+CGLVKNL +T  ++T    + +   LF+ G++ +A     
Sbjct: 542  ALQPSQWGILCPCDTPEGESCGLVKNLALTTHITTDHNPQYLIGLLFSLGVQDIASASWF 601

Query: 552  -------DASYSL------GGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEI 598
                   D + SL      G  + +F++G  +G+  +  +  S LR  RR+  +   V I
Sbjct: 602  EWKQHSQDGNTSLREHNLSGNAYFIFINGALLGIHYNPETLASNLRDLRRKGYISQFVSI 661

Query: 599  KRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGIIELV 651
              +  Q  V+I  D GR+ RPL++V+N GK       I++LE K  TF  L++ GI+E +
Sbjct: 662  FCNHSQYSVQIATDGGRLCRPLIIVDN-GKQRIQKEHIENLENKQITFNDLINKGILEWI 720

Query: 652  GTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLY 711
               EE +   A          E+    + TH E+D   +LG+  G+IP+ NH+ + R  Y
Sbjct: 721  DVNEENNLLIALK--------EENITEETTHVEIDPLAILGVVSGLIPYPNHNQSPRNTY 772

Query: 712  QSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPEL 771
            Q      Q +G    N  +R D++ + L YPQ+PL +T   +           ++   +L
Sbjct: 773  QC-AMGKQVMGVVGLNQFLRCDSILYLLVYPQKPLCKTRTIE-----------MINFEQL 820

Query: 772  YNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKR--RSS 829
              GQN+ VA+  + GY+ ED+++MN+AS++RG  R   I+    E+      +       
Sbjct: 821  PAGQNSSVAIMSYTGYDIEDAIIMNKASIDRGFARCFVIKRQTVELQKLPNGLAECVIGP 880

Query: 830  DDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA-----DSGADHS------ 878
            + +++    +      + L++DG   +G  +   DI++ K +     +   D S      
Sbjct: 881  NKLLDNSSTKVYNSNWNVLEEDGICRVGEMVAEDDIIVNKVSPINTREYVGDPSQVNLSE 940

Query: 879  -----IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
                 IK K      + +V+L+ N +G +   +  RQ R P LGDKFSS HGQKGV+G +
Sbjct: 941  YRLTPIKYKGIAPSYIDRVLLTENSEGSHIYKIITRQTRLPELGDKFSSRHGQKGVVGLI 1000

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
             SQE+FPF+  G  PD+++NPH FPSR T G+L+E    K        +  G  RY T F
Sbjct: 1001 VSQEDFPFSESGWCPDLIMNPHGFPSRMTVGKLMELISSKA------SVLDGNYRYGTAF 1054

Query: 994  ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
                V+   + L + GF   G E L  G TGE + + IF+GP FYQ+L HM  DK+  R 
Sbjct: 1055 GGTPVEDAAKCLIQNGFHYSGKEYLTSGITGEAIETYIFVGPIFYQKLRHMVLDKMHARG 1114

Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
             GP   LTRQP   R + GG++ GEMERDCL+A+GA+  L ERL   SD ++ ++C KC 
Sbjct: 1115 RGPRQILTRQPTEGRSKDGGLRLGEMERDCLVAYGASNLLIERLMLNSDVFETYVCNKC- 1173

Query: 1114 NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                        G      YC  C + DDI    +PY  KLL QEL +M +  +  T+
Sbjct: 1174 ------------GLFGYNNYCHYCRNSDDISIIRLPYACKLLFQELQAMNVCPRIKTK 1219


>gi|400597534|gb|EJP65264.1| RNA polymerase Rpb2 [Beauveria bassiana ARSEF 2860]
          Length = 1157

 Score =  471 bits (1211), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 388/1214 (31%), Positives = 572/1214 (47%), Gaps = 170/1214 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN F+++ ++    +   TI       S      W    + F  +
Sbjct: 37   AFLKVKGLVKQHIDSYNFFVEHEIKDIVRA-NRTI------RSDVDSNFW----LEFTDI 85

Query: 92   TLDKPSFF-AGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
             +D P            D+ P   RL++M+Y++ + V +   VY +     DK K  R  
Sbjct: 86   RVDHPQRQDYKEAKSSTDVTPMECRLRDMSYAAPILVDI---VYIR-----DKQKIIRR- 136

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGAEKV 204
                        N+ +GR+PVM++S  C + G    +      C  D GGYFII G EKV
Sbjct: 137  ------------NVSLGRMPVMLRSSKCRLSGANNAEMEKMNECPLDPGGYFIINGTEKV 184

Query: 205  FVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFE-------DIKGGEKVL 257
             + QEQ+   R+ V             +++NR+I   V  S  E        +K    VL
Sbjct: 185  ILIQEQLSKNRVIVE-----------ADEKNRIISASVTSSTHERKSKTNVTLKKDRIVL 233

Query: 258  SVYFLSTEIPIWILFFALGVSSDKEIVNLI---DFTCEDCSILNILFASIHDADNKCDEF 314
                L   IPI I+  ALG  SD EI+ L+   D   +D  ++N       D   K   F
Sbjct: 234  VHNVLVEGIPIVIVLKALGGLSDYEIMQLVAGADGRYQDEFLINF------DEATKAGVF 287

Query: 315  RKGRNALKYVDKLIKGTT----FPPG---ESTEECMNTYL-----FPSLHGTK--QKARF 360
             +   AL+Y+   +K  +    F P     + EE ++           + G     KA +
Sbjct: 288  TQ-HQALEYIGTRVKMGSRRGQFGPQVRRNNVEEGLDALANLIIAHVPIEGLDFYPKAIY 346

Query: 361  LGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQ 416
            +  M + +L A    +  D+RD   NKRLELAG+LL    E   K  +   +  + K L+
Sbjct: 347  VAMMTRKVLMAAQDSKLVDDRDFVGNKRLELAGQLLSLLFEDLFKRFMVEVKMSIDKFLK 406

Query: 417  RDLYGDRTVRPIEYYLDA-SILTN-------GLSRAFSTGAWSHPFKRTERISGIVANLG 468
            ++   +R V      LDA ++++N       G++RA  TG WS       R +G+   L 
Sbjct: 407  KN---NRAVP-----LDAVNMISNHANNIGMGINRAIQTGNWSVKRFNMNR-AGVTHVLS 457

Query: 469  RANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGL 528
            R + +  L  + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   
Sbjct: 458  RLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTH 517

Query: 529  VSTSI-LEPIFEQLF--NSGMEKLAD--DASYSLGGKFKVFVDGDWIGVCKDSLSFVSEL 583
            ++T++  EP+   +F  + G+E + +   A     G + + ++G    + +    F S  
Sbjct: 518  ITTNVDEEPVKRWVFTLDVGVEPIRNFSGAEMHREGSYIIHINGTPFALTRYPKRFCSRF 577

Query: 584  RRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN-MGKIKS-----LEGKNY 637
            R  RRR  +   V I  +   + V I  D GRI RP ++V+N   K+K      L+    
Sbjct: 578  RTMRRRGWISPFVSISINLHFNAVHIATDEGRICRPYIIVKNGFQKLKPEHLRLLQLGKV 637

Query: 638  TFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGI 697
            TF   L +G++E +   EE+D         L+   EDK  +  TH E++   +LG   G+
Sbjct: 638  TFDDFLRNGVVEYLDVNEEQDA--------LVTIYEDKITMGTTHLEIEPFTILGAVAGL 689

Query: 698  IPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGK 757
            IPF +H+ + R  YQ      QAIG    N   R+DTL + L YPQRP+   +IS  +  
Sbjct: 690  IPFPHHNQSPRNTYQC-AMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPM---VISKTIQL 745

Query: 758  PGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEV 817
              Y         +L  GQNA V V  + GY+ ED+LV+N+ S++RG  R +  R Y  E+
Sbjct: 746  VNYD--------KLPAGQNATVVVMSYSGYDIEDALVLNKGSIDRGFGRCQVFRKYTTEL 797

Query: 818  DNKEMQVKRRSSDDMVNFGK--IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---- 871
              K    +R    D VN G    + +  +  +LDDDG   +G  + SG  +I K      
Sbjct: 798  -QKYPNGRRERIGDPVNEGDGDQRKRTEKHKALDDDGLAMVGGRVFSGQSMIKKETPLDL 856

Query: 872  -------DSGA----DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKF 920
                   D G+    D ++  +  +   + KV++S  +       V  RQ R P LGDKF
Sbjct: 857  TTTGIGLDRGSSDFRDSAVNYRIPDPAYIDKVMISHTEKDTTVVKVQTRQTRRPELGDKF 916

Query: 921  SSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGK 980
            SS HGQKGV+G +   E+ PF   G+ PDI++NPH FPSR T G+LLE   GK     G+
Sbjct: 917  SSRHGQKGVVGIIVEHEDMPFADNGLTPDIIMNPHGFPSRMTVGKLLECLTGKASIIHGR 976

Query: 981  GICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQR 1040
                    +   F +  ++ +++ L   GFS  G +    G TGE + + IF GP +YQR
Sbjct: 977  PDYG----FGDAFRSHPLEEMSQVLLDHGFSWEGKDYFTSGLTGEPLEAYIFNGPIYYQR 1032

Query: 1041 LIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTL 1100
            L HM +DK+  R  GP   LTRQP   R R GG++ GEMERDCLIA+GA+  L ERL   
Sbjct: 1033 LKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMIS 1092

Query: 1101 SDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELF 1160
            SD   + IC++C            G    +G YC+ C S  ++ K  +PY AKLL QEL 
Sbjct: 1093 SDGVVIDICQQC------------GLFGYKG-YCQTCKSTREVTKMTMPYAAKLLVQELI 1139

Query: 1161 SM--GITLKFDTEF 1172
            SM  G+ L+   EF
Sbjct: 1140 SMNVGVRLQLADEF 1153


>gi|225678942|gb|EEH17226.1| DNA-directed RNA polymerase III subunit RPC2 [Paracoccidioides
            brasiliensis Pb03]
          Length = 1232

 Score =  471 bits (1211), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 373/1220 (30%), Positives = 563/1220 (46%), Gaps = 187/1220 (15%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGE--TIVEPG-YDPSKKGEGEWRYASMRF 88
            +F    GLV   I+SYN F++  L+K   +  E  + V+P  Y  S        +   RF
Sbjct: 115  AFLKVKGLVKQHIDSYNYFVEVQLKKIVQASAEIRSDVDPNFYIRSSAKTSHSVFRVFRF 174

Query: 89   GQVTLDKPSFFAGNGGDEHD--------MFPRHARLQNMTYSSRMKVKVQFQVYTQKRVT 140
              + L  P        +E D        + P   RL++MTY+S + V  ++ V  ++RV 
Sbjct: 175  HDIYLGTPR----RADEEQDSNFNAASTITPNECRLRDMTYASPILVDFEY-VRGRQRVK 229

Query: 141  SDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGG 194
             +                       IGR+PVM++S  C +    + +      C  D GG
Sbjct: 230  RN--------------------GTAIGRMPVMLRSSKCVLSNKSEAEMQLLQECPLDPGG 269

Query: 195  YFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAY----KSENKRNRLIVRLVDMSKFEDI 250
            YFI+ G EKV + QEQ+   R+ V   +   +       S N+R          SK   I
Sbjct: 270  YFIVNGTEKVILVQEQLSKNRVIVETDLKKEIVQASVTSSSNERK---------SKSYII 320

Query: 251  KGGEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNL---IDFTCEDCSILNILFASIHD 306
               E++   +  L+ ++PI IL  A+G+ SDKE++ L   ID T ++   +N   A    
Sbjct: 321  LKKERIYVRHNVLNEDVPIVILLKAMGIQSDKEMLLLVAGIDSTYQEDFAINFEEAV--- 377

Query: 307  ADNKCDEFRKGRNALKYVDKLIKGTTFPPG-------------ESTEECMNTYLFPSLHG 353
               K   + +   AL+Y+   IK    P               E+    + +++      
Sbjct: 378  ---KLGIYTQ-HQALEYIGSRIKINRKPNNFGVIRRNYVQEAIEAISSVIISHVVVENLN 433

Query: 354  TKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL-----------ERELKV 402
             + KA ++ +M + +L A       D+RD   NKRLELAG+LL           + ++K+
Sbjct: 434  FRPKALYVAHMARRVLMAKHDPSLVDDRDYVGNKRLELAGQLLSLLFEDLFKKFQFDIKM 493

Query: 403  HIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISG 462
            +I    K+  +  Q D YG   +         + +T G++RA STG WS    R ER +G
Sbjct: 494  NIDKVLKKPVRTEQFDAYGVVAIH-------GNHITQGMNRAISTGNWSLKRFRMER-AG 545

Query: 463  IVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKN 522
            +   L R + +  L  + R   Q + T KV   R   PS +G +C   TP+GE CGLVKN
Sbjct: 546  VTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCPSDTPEGEACGLVKN 605

Query: 523  LGV-TGLVSTSILEPIFEQLFNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSF 579
            L + T + +    EP+ + +F  G E +       L G+  + VF++G  I + +    F
Sbjct: 606  LALMTHITTNDEEEPVRKLIFALGAEDVQTVGGRELHGQGAYIVFLNGSPIALTRRPKFF 665

Query: 580  VSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSL 632
            +   RR RR   +   + +  +  Q  V I  D GRI RPL++VE+ GK       +++L
Sbjct: 666  LHSFRRLRRTGRVSEFISVFINHHQRAVHIATDDGRICRPLIIVED-GKSKVQAHHLRAL 724

Query: 633  EGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLG 692
               +  F   L HG++E +   EE D      I     DI D      TH E++   +LG
Sbjct: 725  RSGSMEFDDFLAHGLVEYLDCNEENDS----NIAVYEDDIVDST----THLEIEPFTILG 776

Query: 693  LSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMIS 752
               G+IP+ +H+ + R  YQ      QAIG    N  +R+D+L + + YPQ+P+ +T   
Sbjct: 777  AVAGLIPYPHHNQSPRNTYQCAM-GKQAIGAIANNQFLRIDSLLYTMVYPQKPMVKTRTI 835

Query: 753  DCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRS 812
            +           ++    L  GQ A VAV  + GY+ ED+LV+N+ S++RG  R +  R 
Sbjct: 836  E-----------LIKYDRLPAGQAATVAVMSYSGYDIEDALVLNKGSIDRGFGRCQVFRK 884

Query: 813  YKAEVDNKEMQVKRR-SSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA 871
            Y   + +     K +    D  N   ++        LD+DG   +G  +  G++ I K  
Sbjct: 885  YSTNLKSYSNGTKDKLKGPDRENGLPVRKHA----LLDNDGLAAVGEKVNHGEVYINKVT 940

Query: 872  D--------SGADHSIKL---------KHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSP 914
                     +G+D    +         K  +   + KV++SS +       V  RQ R P
Sbjct: 941  PENALSSGITGSDAGRPITYIPSPQTYKLPDPSYIDKVMISSTEAENQLIKVQTRQTRRP 1000

Query: 915  CLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKG 974
             +GDKFSS HGQKGV+G +  Q + PF+  GIVPDI++NPH FPSR T G++LE   GK 
Sbjct: 1001 EVGDKFSSRHGQKGVVGIIAEQADMPFSDLGIVPDIIMNPHGFPSRMTVGKMLELVAGKA 1060

Query: 975  IAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIG 1034
                  GI SG   Y T F    V+ ++  L + GFS  G + L  G TGE + + +F+G
Sbjct: 1061 ------GILSGQFSYGTAFGGSPVEEMSAVLVKHGFSYGGKDCLTSGITGESLPAYVFMG 1114

Query: 1035 PTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLH 1094
            P +YQ+L HM +DK+  R  GP   LTRQP   R R GG++ GEMERDCLIA+G +  L 
Sbjct: 1115 PIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLL 1174

Query: 1095 ERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKL 1154
            ERL   SD Y++ +C  C  +                 Y   C              +KL
Sbjct: 1175 ERLMISSDQYEVDVCESCGFMG----------------YSGWCQR------------SKL 1206

Query: 1155 LCQELFSMGIT--LKFDTEF 1172
            L QELFSM +   LK   EF
Sbjct: 1207 LVQELFSMNVVARLKLADEF 1226


>gi|396082394|gb|AFN84003.1| DNA-directed RNA polymerase III subunit 2 [Encephalitozoon romaleae
            SJ-2008]
          Length = 1110

 Score =  470 bits (1210), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 363/1203 (30%), Positives = 561/1203 (46%), Gaps = 169/1203 (14%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
            FF E GLV   I SY+ F+ + ++    +    IV+   D +       +Y  +R G  +
Sbjct: 13   FFKEKGLVRQHIESYDYFVDHEIKALMRA--NQIVDSDIDHT----FYLKYLDIRVGMPS 66

Query: 93   LDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYI 152
            +++           +++FP   RL+++TYS+ + V ++   Y + R           Q I
Sbjct: 67   IEENMV-------NYNVFPIECRLRDVTYSANIYVDIE---YVRNR-----------QII 105

Query: 153  QKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG----------------DCDFDHGGYF 196
             K        ++ IG++PVM++S  C ++   KG                +C  D GGYF
Sbjct: 106  VKR-------DVCIGKMPVMLRSSRCHLRKEAKGSIEGSRTRDRKIKESQECPLDVGGYF 158

Query: 197  IIKGAEKVFVAQEQICLKRLWVSNS---MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGG 253
            II+G E+V + QEQ+   R+ + +    +  +V   ++  +++  V + D   +      
Sbjct: 159  IIRGIERVILIQEQLSKNRIIIESGPKGLFASVTSSTDEHKSKTSVTIKDDCYY------ 212

Query: 254  EKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDE 313
               L     + EIP+ I+  ALG++ DKEI       C       I+  S  +   K  E
Sbjct: 213  ---LKNSMFNEEIPVVIVMKALGLTQDKEIAE-----CVGKEYFEIIVPSFGECILK--E 262

Query: 314  FRKGRNALKYVDKLIKGTTFPPGESTEECMNTY---LFPSLH----GTKQKARFLGYMVK 366
                  AL Y+   I+    P     EE +      + P++       ++K  ++  M++
Sbjct: 263  VFTKEQALLYISNYIR--LRPEDNRIEEVLTILSEKVLPNVQIEGCNLRKKGIYIALMIR 320

Query: 367  CLLQAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGD 422
             L Q      K D++D   NKR ELAG+LL    E   K      +K + K L +     
Sbjct: 321  RLTQTRLNILKEDDKDFVGNKRFELAGQLLSILFEDTFKRFNFELKKSIDKILSKRSRAQ 380

Query: 423  RTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
                     L A+++T+ LSRA STG W+    R ER SG+   L R + +  +  + + 
Sbjct: 381  EFDALTFLNLQANMITSTLSRAISTGNWNLKRFRMER-SGVTHVLSRHSYISAVGMMTKI 439

Query: 483  RQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQL 541
                + T KV   R  H S WG +C + TP+GE+CGLVKNL +   ++T S   P+ + +
Sbjct: 440  NSHFEKTRKVSGPRSLHTSSWGMLCPVDTPEGESCGLVKNLALLAEITTNSDTRPVLDLI 499

Query: 542  FNSGMEKLADDASYSLG--GKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIK 599
            F  G   +    +  +   G F VF++GD +G+  +   FV + +  RR+  +   V I 
Sbjct: 500  FKLGAVDINSVYTREIHQEGMFSVFLNGDIVGIIDNVDFFVEQFKLHRRKGLVGKFVSIY 559

Query: 600  RDELQSEVRIFMDAGRILRPLLVVENMG---------------------KIKSLEGKNY- 637
            +   +  + I  D GR+ RPL+V++                        KI+  +GK++ 
Sbjct: 560  KVRTERVIHIASDNGRVCRPLIVIDKKKINQMIVSNEVDKCFEALNIPQKIEMEKGKSFL 619

Query: 638  -------TFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFL 690
                   +F  LL+ G IE +   EE DC  A   + ++++         TH E+    +
Sbjct: 620  DCYLKYRSFSDLLEEGFIEYLDVNEENDCLIALRPEDIVEET--------THLEISEFAI 671

Query: 691  LGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTM 750
            LG   G++PF +H+ + R  YQ      QAIG  + N   R D++  QL Y  RP+  T 
Sbjct: 672  LGYVAGLVPFPHHNQSPRNTYQCA-MGKQAIGHISLNVKKRFDSVILQLTYTHRPMVSTK 730

Query: 751  ISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHI 810
            I D +      +N      E+  GQNA+VAV  + GY+ ED+LV+N+AS+ERG+FR E  
Sbjct: 731  ILDLIN-----YN------EIPAGQNAMVAVMSYSGYDIEDALVLNKASIERGLFRVE-- 777

Query: 811  RSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKY 870
              YK         +K+ SS        +     +   LDDDG    G  ++ G I + K 
Sbjct: 778  -VYKTTT----TLLKKHSS----GMSDVLWPNPKESVLDDDGLGKPGKMVKDGTIYVNKM 828

Query: 871  A--DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKG 928
            +  D     + K+   +   + KV+++ + D      + LRQ R P +GDK SS HGQKG
Sbjct: 829  SPIDGVYKFTGKIHRGDPAYIDKVLITRSQDQVLIKTM-LRQTRPPEIGDKLSSRHGQKG 887

Query: 929  VLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKR 988
            V+G +  QE+ PF  QG+VPDI++NPH FPSR T G+++E   GK       G+  G   
Sbjct: 888  VVGLIVRQEDMPFNDQGVVPDIIMNPHGFPSRMTVGKIIELISGKA------GVVEGKIF 941

Query: 989  YATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDK 1048
             +T F   SV+     L   GFS  G +    G TG  + + IF GP FYQRL HM  DK
Sbjct: 942  DSTAFKENSVEETCNILASHGFSYSGKDCFTSGTTGAPLTAYIFFGPVFYQRLKHMVADK 1001

Query: 1049 VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHI 1108
            +  R  GP   LTRQP   R + GG+K GEMERDCLI +GA++ + ERL   SD ++ ++
Sbjct: 1002 IHMRARGPRAILTRQPTEGRSKDGGLKLGEMERDCLIGYGASSLITERLMISSDVFEAYV 1061

Query: 1109 CRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
            C+ C             G       C +C       K  +PY  KLL QEL SM I  + 
Sbjct: 1062 CKSC-------------GVLAFKDCCVVCKDTKP-SKIKMPYACKLLFQELMSMNILPRL 1107

Query: 1169 DTE 1171
              E
Sbjct: 1108 HIE 1110


>gi|294950795|ref|XP_002786777.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
            putative [Perkinsus marinus ATCC 50983]
 gi|239901131|gb|EER18573.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
            putative [Perkinsus marinus ATCC 50983]
          Length = 1140

 Score =  470 bits (1210), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 369/1199 (30%), Positives = 563/1199 (46%), Gaps = 157/1199 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+S+N F+   ++    +     +    DP+      W    + +  V
Sbjct: 38   AFLEARGLVKQHIDSFNYFVTTEIKDIVLAESNRRITSDVDPN------W---FLEYHDV 88

Query: 92   TLDKPSFFAGNGGDEH-DMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
             +  PS+    G  +H    P   R+++MTY+S + V +              +  GRE 
Sbjct: 89   RVGAPSY---RGVLQHVQTTPMMCRIRDMTYASDILVDI-------------SYVRGRE- 131

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKV 204
             ++K         + +GR+P+M++S LC +            +C  D GGYFIIKG EKV
Sbjct: 132  VVRK-------NGVCVGRLPIMLRSKLCRLHDATTEQMERMQECPHDPGGYFIIKGTEKV 184

Query: 205  FVAQEQICLKRLWVSNS----MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVY 260
             + QEQ+   R+ V       +   V   + + ++R +V       F+    G  V    
Sbjct: 185  LLMQEQLSNNRIIVEMDPKKLVQAVVTSSTADNKSRTVV------CFKSELSGLFVKHSA 238

Query: 261  FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNA 320
            F +  IP  I+  A+G+ SD+EIV ++    E C +  ++  S+ DA +    F + + A
Sbjct: 239  F-TELIPAVIMLRAMGMESDQEIVQMVG--TEKCHVDGMIL-SLQDA-HATGVFSQ-QQA 292

Query: 321  LKYVDKLIKGTTFPPGESTEECMNTYLFPSLHG--TKQ-----KARFLGYMVKCLLQAYS 373
            L+Y+   +K   +  G  +        F    G  TK      K RFL  M++  L A S
Sbjct: 293  LEYLGNKLKIRMYADGSFSSA------FDQDKGGATKPLDFSGKCRFLCLMMRRALDARS 346

Query: 374  GRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLD 433
                 D+RD + NKRLELAG+L        IA   + + K++  ++     +R  +++  
Sbjct: 347  DSTLLDDRDYYGNKRLELAGQL--------IALLFEDLFKSMNTEIKKSVDMRLTKFFQQ 398

Query: 434  ASILTNGLSRAFSTGAWSHPFKRTE------RI--SGIVANLGRANPLQTLVDLRRTRQQ 485
             S    G S       +     R        RI  SG+   L R + +  L  + R + Q
Sbjct: 399  TSSARAGRSTVGLDSGYPDVLLRATGNIKRFRIDRSGVSQVLSRFSFIAALGAMTRVKSQ 458

Query: 486  VQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNS 544
             + + K+   R   PS WG +C   TP+GE CGL+K L +   V+T   E PI    ++ 
Sbjct: 459  FEKSRKLAGPRALQPSQWGMLCPSDTPEGEQCGLIKALSLLAHVTTPDEEGPIRRLCYSL 518

Query: 545  GMEKLADDASYSL--GGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
            G+E  A      L   G   VF++G  +GV +   +F+S++R  RRR ++   V I   E
Sbjct: 519  GVEDAAGLTGEELHSAGTITVFLNGALLGVHRRPQTFMSDMRTLRRRGKIGEFVSIYEHE 578

Query: 603  LQSEVRIFMDAGRILRPLLVVENMGK--------IKSLEGKNYTFQALLDHGIIELVGTE 654
             Q  + I  D GR+ RPL+VV+  GK        ++ L      F   L  GIIE V   
Sbjct: 579  AQRAIIIATDGGRLCRPLIVVKK-GKPMLKPEVHLRKLRSGELRFTDFLRLGIIEWVDVN 637

Query: 655  EEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQ 714
            EE +        Y+  + ED   ++ TH E++   LLG   G++P+ +H+ + R  YQ  
Sbjct: 638  EENN-------SYIAINPEDVT-MESTHLEIEPLTLLGAVAGLVPYPHHNQSPRNTYQC- 688

Query: 715  KHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNG 774
                QA+G    N  +R DT    L YPQ+P+ ++   D +G              L  G
Sbjct: 689  AMGKQAMGNIACNQHLRTDTQLLLLTYPQQPMCKSRTIDLIGYD-----------NLPAG 737

Query: 775  QNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEV------DNKEMQ---VK 825
             NA VAV  + GY+ ED+L+MN+AS++RG  R    R Y   +       ++E++   V 
Sbjct: 738  HNASVAVMSYSGYDIEDALIMNKASIDRGFGRCCVTRKYATPLARSAIGSSEELRAPPVV 797

Query: 826  RRSSDDMVNFGKIQSKIGRVDS---LDDDGFPFIGANLQSGDIVIGKY-----ADSGA-- 875
                       +    +GR      +D+DG PF G  +  G I+I K      A +G   
Sbjct: 798  GGGGKGGGRHQRQGGFVGRAKKYAIIDEDGLPFSGEQVVDGGILINKVSPMSDAATGQVS 857

Query: 876  ---DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGF 932
               D  I  K+     V +V+ + N+D         RQ R P LGDKFSS HGQKGV+G 
Sbjct: 858  HWRDTPISYKNPVPSYVDRVIATENEDQAKIFKCITRQTRRPELGDKFSSRHGQKGVVGL 917

Query: 933  LESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATP 992
            + +QE+ PF  +G  PD+++NPH FPSR T G+LLE   GK       G+  G + Y T 
Sbjct: 918  IVNQEDMPFGEKGWCPDLIMNPHGFPSRMTVGKLLECVSGKA------GVLDGERSYGTA 971

Query: 993  FATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFR 1052
            F   + + +T+ L R GF     E +  G TGE +   IF+GP +YQ+L HM  DK+  R
Sbjct: 972  FGGTTKEHMTQSLIRHGFHPSAKEYITSGVTGEALECYIFVGPIYYQKLKHMVMDKIHAR 1031

Query: 1053 NTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKC 1112
            +TGPV+ LTRQP   R + GG++ GEMERDCL+A+GA+  L ERL   SD +   +CR+C
Sbjct: 1032 STGPVNQLTRQPTEGRAKDGGLRLGEMERDCLVAYGASNLLLERLMLSSDVFTASVCRRC 1091

Query: 1113 KNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                        G    +   C++C + ++IV   +PY  KLL QEL +M +  +   E
Sbjct: 1092 ------------GLLSYQNGTCKLCGTSENIVDIRMPYACKLLFQELQAMNVCPRLKVE 1138


>gi|6606099|gb|AAF19062.1|AF107790_1 DNA-dependent RNA polymerase II RPB140 [Podospora anserina]
          Length = 934

 Score =  470 bits (1210), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 331/963 (34%), Positives = 487/963 (50%), Gaps = 116/963 (12%)

Query: 201  AEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE-----NKRNRLI--VRLVDMSKFEDIKG 252
            +EKV +AQE+     + V     G +V+Y++E      K +RLI  +++   +K  + KG
Sbjct: 1    SEKVLIAQERSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLISSLQMKLHTKASNEKG 60

Query: 253  ---GEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADN 309
                   +++ ++  ++ + I+F ALG+ SD++I+N I +  +D  +L  L   I +A  
Sbjct: 61   RLANTVSVTLPYVREDVSLAIVFRALGIVSDEDILNHICYDRKDTQMLEALRPCIEEA-- 118

Query: 310  KCDEFRKGRNALKYVDKLIKGTT----FPPGESTEECMNTYLFPSLHGTK----QKARFL 361
             C + R+   AL ++ K   G           + ++ +   + P +  T+    +KA FL
Sbjct: 119  FCIQDRE--IALDFIGKRGNGNMGQNRMNRIRAAKDLLQKEMLPHISQTEGCETRKAFFL 176

Query: 362  GYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYG 421
            GYMV  LLQ   GRR  D+RD F  KRL+LAG LL +  +  +    + +   ++R L  
Sbjct: 177  GYMVNKLLQCALGRRDTDDRDHFGKKRLDLAGPLLAKLFRGVVRRMTQDLMGYMKRCLDT 236

Query: 422  DRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRR 481
            ++    +   + A+ LTN L  + +TG W    K     +G+   L R     TL  LRR
Sbjct: 237  NKHF-TLALGIKANTLTNALKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFASTLSHLRR 295

Query: 482  TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-LEPIFEQ 540
            T   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   VS     +PI + 
Sbjct: 296  TNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPADPIVDF 355

Query: 541  LFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKR 600
            +   GM+ L +          KVFV+G W+GV  D    V+ ++  RR+  +  +V + R
Sbjct: 356  MTARGMDVLEEYEPLRAPNATKVFVNGTWVGVHNDPKQLVTLVQDLRRKNVISFEVSLVR 415

Query: 601  DELQSEVRIFMDAGRILRPLLVVE----------------NMGKIKSLE-----GKNYT- 638
            D  + E +IF DAGR++RPL  VE                N   I  L+     GK +  
Sbjct: 416  DIREREFKIFSDAGRVMRPLFTVEQEEKGNHGVEKGQLILNKDHIARLQRDKELGKYHPD 475

Query: 639  ---FQALLDHGIIELVGTEEEED---CCTAWGIKYL-------------------LKDIE 673
               +Q LL  G IE +  EEEE    C T   +                      ++   
Sbjct: 476  YWGWQGLLKSGAIEYLDAEEEETTMICMTPQDLDDFRMTKLGFHIETTSGQGNNRIRTKV 535

Query: 674  DKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVD 733
            +K    +THCE+  + LLG+   IIPF +H+ + R  YQS     QA+GF  TN S R+D
Sbjct: 536  NKTTHMYTHCEIHPAMLLGICASIIPFPDHNQSPRNTYQS-AMGKQAMGFFLTNYSRRMD 594

Query: 734  TLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSL 793
            T+++ L+YPQ+PL  T   +            L   EL  GQNAIVA+  + GYNQEDS+
Sbjct: 595  TMANILYYPQKPLATTRSME-----------FLKFRELPAGQNAIVAILCYSGYNQEDSV 643

Query: 794  VMNRASLERGMFRSEHIRSY-----KAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSL 848
            VMN++S++RG+FRS   RSY     +  ++  EM  K    D       ++ K G  D L
Sbjct: 644  VMNQSSIDRGIFRSLFFRSYTDCEKRVGINIVEMFEKPTRGD------TLRLKHGTYDKL 697

Query: 849  DDDGFPFIGANLQSGDIVIGKYADSGADH---------------SIKLKHTERGMVQKVV 893
            D DG    G  +   DI+IGK +    D+               S  L+ TE G+V  VV
Sbjct: 698  DADGIIAPGIRVSGEDIIIGKTSPINPDNAELGQRQQQHVKRDASTPLRSTESGIVDSVV 757

Query: 894  LSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVIN 953
            L++N DG  +  V +R  + P +GDKF+S HGQKG +G     E+ PFT +GI PDI+IN
Sbjct: 758  LTTNQDGMRYVKVRVRTTKIPQIGDKFASRHGQKGTIGLTYRMEDMPFTAEGITPDIIIN 817

Query: 954  PHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKW 1013
            PHA PSR T   L+E  L K +A L      GL+  ATPF   +VD++++ L   G+   
Sbjct: 818  PHAIPSRMTIAHLVECLLSK-VATL-----KGLEGDATPFTDVTVDSVSDLLREQGYQSR 871

Query: 1014 GTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGG 1073
            G E LY G TG  +R+  F GPT+YQRL HM +DK+  R  GPV  +TRQPV  R R GG
Sbjct: 872  GFEILYHGHTGRKLRAQCFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGG 931

Query: 1074 IKF 1076
            ++F
Sbjct: 932  LRF 934


>gi|45545303|gb|AAS67499.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Aspergillus fumigatus]
          Length = 936

 Score =  470 bits (1210), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 331/964 (34%), Positives = 481/964 (49%), Gaps = 116/964 (12%)

Query: 201  AEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE-----NKRNRLI--VRLVDMSKFEDIKG 252
            +EKV +AQE+     + V   +      Y +E      K +RL+  + L   +K +  KG
Sbjct: 1    SEKVLIAQERSAGNTVQVFKKAPPSPTPYVAEIRSAVEKGSRLLSQLSLKLFAKGDSAKG 60

Query: 253  G--EKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADN 309
            G    + S   ++ T+IPI ++F ALGV SD++I+N I +   D  +L +L   I +   
Sbjct: 61   GFGPTIRSTLPYVKTDIPIVVVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFV 120

Query: 310  KCDEFRKGRNALKYVDKLIKGTTFPPGES----TEECMNTYLFPSLHGTK----QKARFL 361
              D       AL ++ K     +    E       E M   L P +  ++    +KA FL
Sbjct: 121  IQDR----EVALDFIAKRGSSQSSMNHERRVRYAREIMQKELLPHISQSEGSETRKAFFL 176

Query: 362  GYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYG 421
            GYMV  LLQ   GRR  D+RD F  KRL+LAG LL    +V      + + + +QR +  
Sbjct: 177  GYMVHRLLQCALGRRDVDDRDHFGKKRLDLAGPLLANLFRVLFTRVTRDLQRYVQRCVET 236

Query: 422  DRTVRPIEYYLD----ASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLV 477
            +R     E YL+    AS LT GL  A +TG W    K     +G+   L R     TL 
Sbjct: 237  NR-----EIYLNIGIKASTLTGGLKYALATGNWGEQKKAASSKAGVSQVLSRYTYASTLS 291

Query: 478  DLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEP 536
             LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   ++  +  EP
Sbjct: 292  HLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEP 351

Query: 537  IFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQV 596
            I + +    ME L +          KVFV+G W+GV +D    V+ +   RRR  +  +V
Sbjct: 352  IIDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVGVHRDPAHLVNTMLSLRRRNMISHEV 411

Query: 597  EIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------------IKSLEG--------- 634
             + RD  + E +IF DAGR+ RPL VV+N  K             I+ LE          
Sbjct: 412  SLIRDIREREFKIFTDAGRVCRPLFVVDNDPKSENCGSLVLNKDHIRKLEQDKELPADLD 471

Query: 635  ------KNYTFQALLDHGIIELVGTEEEEDCCTAWGIK-----------YLLKDIED--- 674
                  + + +  L+  G++E V  EEEE        +           Y L + +D   
Sbjct: 472  PEDRRERYFGWDGLVKSGVVEYVDAEEEETIMIVMTPEDLEISKQLQAGYALPEEDDPNK 531

Query: 675  -------KKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTN 727
                   +K   +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN
Sbjct: 532  RVRSVLSQKAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVFLTN 590

Query: 728  PSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGY 787
               R++T+++ L+YPQ+PL  T   +            L   EL  GQNAIVA+  + GY
Sbjct: 591  FDQRMETMANILYYPQKPLATTRSME-----------FLRFRELPAGQNAIVAIACYSGY 639

Query: 788  NQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDS 847
            NQEDS++MN++S++RG+FRS   R+Y        + V  R    M +   I  + G  D 
Sbjct: 640  NQEDSVIMNQSSIDRGLFRSLFYRTYTDSEKMVGLTVVERFEKPMRS-DTIGMRKGTYDK 698

Query: 848  LDDDGFPFIGANLQSGDIVIGKYAD---------------SGADHSIKLKHTERGMVQKV 892
            LD+DG    G  +   DI+IGK A                +  D S  L+ TE G+V +V
Sbjct: 699  LDEDGIIAPGVRVSGEDIIIGKTAPLAPEAEELGQRTKAHTKLDVSTPLRSTENGIVDQV 758

Query: 893  VLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVI 952
            ++S+++D   F  V +R  + P +GDKF+S HGQKG +G    QE+ PFT +G+ PD++I
Sbjct: 759  LVSTSNDDLKFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVSPDLII 818

Query: 953  NPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSK 1012
            NPHA PSR T   L+E  L K ++AL      G +  ATPF   +VD+I+  L   G+  
Sbjct: 819  NPHAIPSRMTIAHLIECQLSK-VSAL-----RGFEGDATPFTDVTVDSISRLLREHGYQS 872

Query: 1013 WGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFG 1072
             G E +Y+G TG  + + +F+GPT+YQRL HM +DK+  R  GP   LTRQPV  R R G
Sbjct: 873  RGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDG 932

Query: 1073 GIKF 1076
            G++F
Sbjct: 933  GLRF 936


>gi|48477331|ref|YP_023037.1| DNA-directed RNA polymerase subunit B [Picrophilus torridus DSM 9790]
 gi|48429979|gb|AAT42844.1| DNA-directed RNA polymerase subunit B [Picrophilus torridus DSM 9790]
          Length = 1194

 Score =  470 bits (1210), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 388/1265 (30%), Positives = 606/1265 (47%), Gaps = 211/1265 (16%)

Query: 33   FFNEYGLVSHQINSYNEFI------KNGLQKAFDSFGETIV----EPG---YDPSK-KGE 78
            FF    +V++QI S N F        N +Q+  D   ET V    EPG    DP K +G+
Sbjct: 8    FFKTESVVNYQIESMNHFYATKDNPNNRMQEIVD---ETKVSDDSEPGVILLDPVKTRGK 64

Query: 79   ------GEWRYASMRFGQVTL--DKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQ 130
                  G  R      G+ T+  +KP     +G   + + P+ AR++++ Y + + ++++
Sbjct: 65   EIKIYFGRIRENGKPSGEPTIWVEKPEIKEASGA-SNQITPQEARIRDLNYMAPVMLRLR 123

Query: 131  FQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VE 184
                         F+ G E+         +   I IG IPVMV+S +C + G      +E
Sbjct: 124  I------------FEDGIEK---------DNDTIKIGDIPVMVRSKICTLTGNNLDIYIE 162

Query: 185  K----------------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGW---- 224
            K                G+   D GGYFII G+E+V V+ E +   ++ V     +    
Sbjct: 163  KNNGPINATRTEKLQYVGEDPNDTGGYFIIGGSERVIVSIEDLAPNKILVEYEEKYDNKV 222

Query: 225  TVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIV 284
             VA     K N     L  M K  D   G   +S+  ++  +P+ IL  ALG+  D EI 
Sbjct: 223  EVAKVFSQKGN--FRALTSMEKGND---GIINVSIPTVAGTVPLVILMKALGMDKDIEIH 277

Query: 285  NLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN----ALKYVDKLIKGTTFPPGESTE 340
            N I     D  +  I++A+I +A N       G N    A+ Y++K      F  G++ E
Sbjct: 278  NAI---FSDIRMDPIIYANIEEARNPKVLPPNGINTTDDAISYLEK-----RFASGQAKE 329

Query: 341  -------ECMNTYLFPSLHGT----KQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRL 389
                   + ++  L P L  T     +KA +LG M + LL+   G R+ D++D + NKR+
Sbjct: 330  FREKKITQMLDRSLLPHLGDTVDDRYKKALYLGRMARSLLELNLGIRQEDDKDHYANKRI 389

Query: 390  ELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGA 449
            +LAG+LL+           K +   L++     R +R I   +   +LT  +  + +TG 
Sbjct: 390  KLAGDLLDELFANAFQSIMKDLKYQLEKTYNRKRGIR-IRPAVRQDLLTQKILHSMATGN 448

Query: 450  WSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFL 509
            W     RT    G+   L R + + TL  LRR    +  +    +AR  HP+ WG+IC  
Sbjct: 449  WIG--GRT----GVSQLLDRTSNVSTLSHLRRIISPLTRSQPHFEARDLHPTQWGRICPN 502

Query: 510  STPDGENCGLVKNLG-VTGLVSTSILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGD 568
             TP+G+NCGLVKN   +  +      + I +++ N G+  +  + S S     +++++GD
Sbjct: 503  ETPEGQNCGLVKNAALIINVTQGIDPDIIIDKIKNLGIYDVESEESSS-----RIYLNGD 557

Query: 569  WIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE---- 624
            +IG   D ++FV+ +R  RR   +  ++ I+ D   +EV +  D GR+ RPLL+V     
Sbjct: 558  FIGYHNDPIAFVNTVRDLRRAGRISQELNIRYDNKTNEVIMNCDRGRLRRPLLIVNDGKT 617

Query: 625  --NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTA-WGIKY----------LLKD 671
              N   ++ L+  +YT + L++ G IE +  EEEE+   A +   Y          L +D
Sbjct: 618  VLNRDMVEKLKMGDYTIEDLVNLGAIEWLDAEEEENSYIAVYPFSYPERCPNCNSILYRD 677

Query: 672  I-------EDKKPIK-----------------FTHCELDMSFLLGLSCGIIPFANHDHAR 707
            +       ED   ++                  THCE+D S +LG+   +IP+  H+ + 
Sbjct: 678  MVTWVNPGEDNIVLECDKCHAHFDGKSLLTSEHTHCEIDPSMILGVVASLIPYPEHNSSP 737

Query: 708  RVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCL---GKPGYGHNH 764
            R+   S   + Q+IG P  N  IRVDT  H L YPQ PL +T + D +    KP      
Sbjct: 738  RITMASA-MTKQSIGLPAANYRIRVDTRGHLLHYPQVPLVKTKVMDFIKYNNKPA----- 791

Query: 765  ILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAE----VDNK 820
                     GQN +VA+  + GYN +D++VMN+AS+ERG+ RS   R+Y AE       +
Sbjct: 792  ---------GQNFVVAIVSYQGYNIQDAIVMNKASIERGLGRSAFFRTYTAEEIRYPGGQ 842

Query: 821  EMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGK-----YADSGA 875
            E + +  + D +    +   K     +LD+ G  +  + +   D+++GK     + +  A
Sbjct: 843  EDRFEIPTHDVLGARAEEYYK-----NLDESGIIYPESEVNGSDVLVGKTSPPRFLEENA 897

Query: 876  DH---------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQ 926
            D          S+ ++  E G V  V L+ ++       V +R  R+P  GDKF+S HGQ
Sbjct: 898  DKLGPMRRRESSVTMRPNESGYVDNVFLTVSESNSRIVKVKVRMDRTPQPGDKFASRHGQ 957

Query: 927  KGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGL 986
            KGV+G +  QE+ PFT  GI+PD++ NPH+ PSR T G +LE    K   A G+ I S  
Sbjct: 958  KGVIGAVVPQEDMPFTEDGIIPDLLFNPHSVPSRMTLGHVLEMMGAKVSTATGENIDS-- 1015

Query: 987  KRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSE 1046
                T F      ++ E+L + GFS+ G E +YDG TG   ++ IFIG  +YQ+L HM  
Sbjct: 1016 ----TIFDGEPEKSLREELKKYGFSESGEEVMYDGITGRKFKARIFIGVIYYQKLHHMVA 1071

Query: 1047 DKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQM 1106
            +K   R+ GPV  LTRQP   R R GG++FGEMERD LIAHGA+  + +RL   SD   +
Sbjct: 1072 NKFHARSRGPVQILTRQPTEGRSRQGGLRFGEMERDTLIAHGASMVIKDRLLDQSDGTIL 1131

Query: 1107 HIC--RKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
            ++C    C ++A  I     G  K     C +C +  +I      Y  KL+  EL S+GI
Sbjct: 1132 YVCGNPSCGHIA--IYDFKRGTLK-----CPVCGNTGNIYPIETSYAFKLMRDELSSLGI 1184

Query: 1165 TLKFD 1169
             ++ +
Sbjct: 1185 IMRLE 1189


>gi|134055102|emb|CAK43742.1| unnamed protein product [Aspergillus niger]
          Length = 1225

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 368/1221 (30%), Positives = 565/1221 (46%), Gaps = 189/1221 (15%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN  ++  L+K  +S   + +    D +           ++F  +
Sbjct: 108  AFLKVKGLVKQHIDSYNYLVEVQLKKIVES--SSTIRSDVDHT---------FYIKFTNI 156

Query: 92   TLDKPSFFAGNGGDEHDMF------PRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
             L  P   A    D    F      P+  RL++ TY++   ++V F+           + 
Sbjct: 157  YLGFPRR-ADEPQDARADFTYSTVSPQECRLRDTTYAA--PIQVDFE-----------YV 202

Query: 146  TGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIK 199
             GR++ ++K         + IGR+PVM++S  C +      +      C  D GGYFI+ 
Sbjct: 203  RGRQRVMRK--------GVAIGRMPVMLRSSKCVLANKTPAEMTVLNECPLDPGGYFIVN 254

Query: 200  GAEKVFVAQEQICLKRLWVSNS------MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGG 253
            G EKV + QEQ+   R+ V              +  +E K    IV          +K  
Sbjct: 255  GTEKVILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSKSYIV----------LKKD 304

Query: 254  EKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLI----DFTCEDCSI------------- 296
            +  +    LS +IPI IL  A+G+ +DKE++ L+        ED +I             
Sbjct: 305  KLYVKHNVLSEDIPIVILLKAMGIHTDKEMLLLVAGVDKVYQEDFAINFEEAIKLGIYTQ 364

Query: 297  ---LNILFASIHDADNKCDEFRKG--RNALKYVDKLIKGTTFPPGESTEECMNTYLFPSL 351
               L+ + A I     +   +R+   + A++ +  +I         S  E  N    P  
Sbjct: 365  QQALDWIGARIKINRKQSPSYRRTHVQEAVEAIASVII--------SHIEVKNMNFRP-- 414

Query: 352  HGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLER-----------EL 400
                 KA ++ +M + +L A +     D+RD   NKRLELAG+LL             ++
Sbjct: 415  -----KAVYVAHMARRVLMAKNDASLVDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDI 469

Query: 401  KVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERI 460
            K++I     +  +A   D Y   T       + ++ +T G++RA STG WS    R ER 
Sbjct: 470  KMNIDKVLNKRNRAEAFDAYSVIT-------MHSNHITQGMNRAISTGNWSLKRFRMER- 521

Query: 461  SGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLV 520
            +G+   L R + +  L  + R   Q + T KV   R   PS +G +C   TP+GE CGLV
Sbjct: 522  AGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCPADTPEGEACGLV 581

Query: 521  KNLGVTGLVSTSILE-PIFEQLFNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSL 577
            KNL +   ++T+  E P+   +F  G E +       L G   + + ++G    + +   
Sbjct: 582  KNLALMTHITTNDEEGPVRNLIFMLGAEDIQTVGGKELYGPGCYTISINGTPTALTRRPK 641

Query: 578  SFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IK 630
             F+   RR RR   +   V I  +  Q  V +  D GRI RPL+VVEN GK       ++
Sbjct: 642  YFLDAFRRLRRMGRISEFVSIYINHHQRAVHVATDDGRICRPLIVVEN-GKSRVNAQHLE 700

Query: 631  SLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFL 690
             L      F   L  G++E +   EE D      I    KDI +      TH E++   +
Sbjct: 701  KLRNGTMQFDDFLAQGLVEYLDVNEENDSL----ISIYEKDITETT----THLEIEPFTV 752

Query: 691  LGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTM 750
            LG   G+IP+ +H+ + R  YQ      QAIG   +N  +R+D++ + + YPQ+P+ ++ 
Sbjct: 753  LGAVAGLIPYPHHNQSPRNTYQC-AMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSR 811

Query: 751  ISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHI 810
              +           +    +L  GQNAIVAV  + GY+ ED+LV+N+ S++RG  R +  
Sbjct: 812  TIE-----------LTKYDQLPAGQNAIVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVF 860

Query: 811  RSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGK- 869
            R Y   + +     K R S       +  + I +   L+ DG   +G  + +G++ I K 
Sbjct: 861  RKYVTNLKSYSNGTKDRLSGPTY---ENDAPIRKHALLESDGLAAVGEQVNAGEVYINKS 917

Query: 870  ---------YADSGADHSIKLKHT-------ERGMVQKVVLSSNDDGKNFSVVSLRQVRS 913
                     + +S A   +    T       +   + KV++S  ++      V  RQ R 
Sbjct: 918  TPDQSMSSGFPNSDAGRPVSYMPTPMTYKLPDPAYIDKVMVSVTENENQLVKVLTRQTRR 977

Query: 914  PCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGK 973
            P +GDKFSS HGQKGV+G +  Q + PFT  GI PDI++NPH FPSR T G++LE   GK
Sbjct: 978  PEVGDKFSSRHGQKGVVGIIADQADMPFTDTGINPDIIMNPHGFPSRMTVGKMLELVAGK 1037

Query: 974  GIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFI 1033
                   G+ +G   Y T F    V  +++ L   GFS  G + L  G TGE +   +F 
Sbjct: 1038 A------GVLAGQHGYGTCFGGSPVQEMSQILIDNGFSYGGKDYLTSGITGEALPFYVFT 1091

Query: 1034 GPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL 1093
            GP +YQ+L HM +DK+  R  GP   LTRQP   R R GG++ GEMERDCLIA+G +  L
Sbjct: 1092 GPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLL 1151

Query: 1094 HERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAK 1153
             ERL   SD +++ +C +C  +  +              +C+ C S   +VK  +PY AK
Sbjct: 1152 LERLMISSDRHEIDVCEQCGFMGYL-------------NWCQRCKSSRSVVKMAIPYAAK 1198

Query: 1154 LLCQELFSMGIT--LKFDTEF 1172
            LL QEL SM +T  LK D EF
Sbjct: 1199 LLIQELMSMNVTARLKLDDEF 1219


>gi|259489446|tpe|CBF89725.1| TPA: DNA-directed RNA polymerase III, beta subunit, putative
            (AFU_orthologue; AFUA_1G02460) [Aspergillus nidulans FGSC
            A4]
          Length = 1225

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 361/1201 (30%), Positives = 566/1201 (47%), Gaps = 150/1201 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN  ++  L+K  +S      +  ++   K    +     R  + 
Sbjct: 109  AFLKVKGLVKQHIDSYNYLVEVQLKKIVESSNTIRSDVDHNFYIKFTDIYLGFPRRADEP 168

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
               +  F      +E  + P   RL++ TY++   ++V F+           +  GR++ 
Sbjct: 169  QDVRTEF------EESTVTPHECRLRDTTYAA--PIQVDFE-----------YIRGRQRV 209

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG------DCDFDHGGYFIIKGAEKVF 205
             +K         + IGR+PVM++S  C +            +C  D GGYFI+ G EKV 
Sbjct: 210  RRK--------GVSIGRMPVMLRSSKCVLGNKTPAQMTVLNECPLDPGGYFIVNGTEKVI 261

Query: 206  VAQEQICLKRLWVSNS-----MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVY 260
            + QEQ+   R+ V        +  +V   S  ++++  + L         K     +   
Sbjct: 262  LVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSKSYIIL---------KKDRLYVKHN 312

Query: 261  FLSTEIPIWILFFALGVSSDKEIVNLI---------DFTCEDCSILNI-LFASIHDADNK 310
             LS +IPI IL  A+G+ +DKE++ L+         DF       + + +F      D  
Sbjct: 313  VLSEDIPIVILLKAMGIHTDKEMMLLVAGVDKVYQEDFAINFEEAIKVGVFTQQQALDWI 372

Query: 311  CDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQ 370
                +  R  + Y    ++       E+    + +++       + KA ++  M + +L 
Sbjct: 373  GSRIKINRKQMSYRRTHVQEAV----EAIASVIISHIEVKDMNFRPKAIYVANMARRVLM 428

Query: 371  AYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDRTVR 426
            A +     D+RD   NKRLELAG+LL    E   K      +  + K L +       V 
Sbjct: 429  AKNDAALVDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDIKMNIDKVLNKR----NRVE 484

Query: 427  PIEYY----LDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
              + +    + ++ +T G++RA STG WS    R ER +G+   L R + +  L  + R 
Sbjct: 485  AFDAWSVIGMHSNHITQGMNRAISTGNWSLKRFRMER-AGVTHVLSRLSYIAALGMMTRI 543

Query: 483  RQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQL 541
              Q + T KV   R   PS +G IC   TP+GE CGLVKNL +   ++T+  E PI   +
Sbjct: 544  SSQFEKTRKVSGPRALQPSQFGMICLADTPEGEACGLVKNLALMTHITTNDEEGPIKNLI 603

Query: 542  FNSGMEKLADDASYSL--GGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIK 599
            F  G E +       +   G + + ++G  + + +    F++  RR RR   +   V I 
Sbjct: 604  FMLGAEDIQTVGGKEIYAPGSYTISINGTPMALTRRPKYFLNAFRRLRRMGRISEFVSIY 663

Query: 600  RDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGIIELVG 652
             +  Q  V +  D GRI RPL++VE+ GK       ++ L      F   L  G++E V 
Sbjct: 664  INHHQRAVHVATDDGRICRPLIIVED-GKSRVKKHHLRKLRDGTMQFDDFLAQGLVEYVD 722

Query: 653  TEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 712
              EE D      I    KDI D      TH E++   +LG   G+IP+ +H+ + R  YQ
Sbjct: 723  VNEENDSL----IAIYEKDITDTT----THMEIEPFTILGAVAGLIPYPHHNQSPRNTYQ 774

Query: 713  SQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELY 772
                  QAIG   +N  +R+D++ + + YPQ+P+ ++   +           +    +L 
Sbjct: 775  C-AMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIE-----------LTKYDQLP 822

Query: 773  NGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDM 832
             GQNA VAV  + GY+ ED+LV+N+ S++RG  R +  R Y   V N  M+     + D+
Sbjct: 823  AGQNATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKY---VTN--MKSYSNGTKDI 877

Query: 833  VNFGKIQ--SKIGRVDSLDDDGFPFIGANLQSGDIVIGKY------------ADSGADHS 878
            ++    +  + I +   L+ DG   +G  + +G++ I K             +D+G   S
Sbjct: 878  LSPPTYENDAPIRKHALLESDGLAAVGEQVNAGEVYINKSTPDQSMSSGMPGSDAGRPIS 937

Query: 879  -----IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
                 +  K  +   + KV++S+ ++      V  RQ R P +GDKFSS HGQKGV G +
Sbjct: 938  YNPTPMTYKLPDPAYIDKVMISATENENQIIKVLTRQTRRPEVGDKFSSRHGQKGVTGII 997

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
              Q + PFT QGI PDI++NPH FPSR T G++LE   GK       G+ SG   Y T F
Sbjct: 998  VDQADMPFTDQGINPDIIMNPHGFPSRMTVGKMLELVAGKA------GVLSGQHGYGTCF 1051

Query: 994  ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
            +   V+ +T+ L   GFS  G + L  G TGE +   +F GP +YQ+L HM +DK+  R 
Sbjct: 1052 SGTPVEQMTQTLIDKGFSYGGKDYLTSGITGEALPFYVFTGPIYYQKLKHMVQDKMHSRA 1111

Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
             GP   LTRQP   R R GG++ GEMERDCLIA+G +  L ERL   SD +++ +C +C 
Sbjct: 1112 RGPRATLTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEVDVCEQCG 1171

Query: 1114 NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT--LKFDTE 1171
             +  +              +C+ C S   +VK  +PY AKLL QEL SM +T  LK + E
Sbjct: 1172 FMGYL-------------NWCQRCKSSRSVVKMVIPYAAKLLIQELMSMNVTARLKLEDE 1218

Query: 1172 F 1172
            F
Sbjct: 1219 F 1219


>gi|89274900|gb|ABD65891.1| RNA polymerase II second largest subunit, partial [Pycnoporus sp.
            ZW02.30]
          Length = 896

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 305/871 (35%), Positives = 457/871 (52%), Gaps = 85/871 (9%)

Query: 258  SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG 317
            ++ ++  +IPIW++F ALGV SD++I+  I +  +D  +L +L   I +     D     
Sbjct: 52   TIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDNQMLEMLKPCIDEGFVIQDR---- 107

Query: 318  RNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSLH----GTKQKARFLGYMVKCL 368
              AL Y+    +GTT            +E +   + P +        +KA F GYM+  L
Sbjct: 108  EIALDYIGN--RGTTTGLNRERRLRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRL 165

Query: 369  LQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPI 428
            L A   RR  D+RD F  KRL+LAG LL    ++      K + + LQ+ +   +    +
Sbjct: 166  LLAALERRDLDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFN-L 224

Query: 429  EYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQY 488
               +  + +TNGL  + +TG W    K     +G+   L R     TL  LRR    +  
Sbjct: 225  SLAVKHNTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGR 284

Query: 489  TGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGME 547
             GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  S+  P+ E L   G+E
Sbjct: 285  EGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLE 344

Query: 548  KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEV 607
             L ++A  S     KVFV+G W+GV +D  + V  +++ RR+ ++  +V + RD  + E+
Sbjct: 345  SLEENAHSSTPCT-KVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREREL 403

Query: 608  RIFMDAGRILRPLLVVENMG------KIKSL-EGKN-----YTFQALLDHGIIELVGTEE 655
            R++ D GR+ RPL +VEN         I++L  GK      Y +  L+  G+IEL+  EE
Sbjct: 404  RLYTDPGRVCRPLFIVENQQLLLQKRHIENLVRGKEDPEFEYKWDNLIKDGVIELLDAEE 463

Query: 656  EED---CCT----------AWGIKYLLKDIED-----KKPIK---FTHCELDMSFLLGLS 694
            EE    C T          A GI        D     K P     +THCE+  S +LG+ 
Sbjct: 464  EETVMICMTPEDLENSRLQAAGIDPHADAEFDPSARLKAPTNAHTWTHCEIHPSMILGVC 523

Query: 695  CGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDC 754
              IIPF +H+ + R  YQS     QA+G   TN  +R+DT+++ L+YPQ+PL  T   + 
Sbjct: 524  ASIIPFPDHNQSPRNTYQSAM-GKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEY 582

Query: 755  LGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYK 814
            L              EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS + RSY 
Sbjct: 583  LR-----------FRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSY- 630

Query: 815  AEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA--- 871
             +++ K    +    +       ++ K G  D L++DG    G N+   DI+IGK A   
Sbjct: 631  MDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKLEEDGLIAPGTNVNGEDIIIGKTAPIP 690

Query: 872  ------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDK 919
                         +  D S  LK TE G+V +V++++N +G+ F  + +R  R P +GDK
Sbjct: 691  PDSEELGQRTRTHTKRDVSTPLKSTESGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGDK 750

Query: 920  FSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALG 979
            F+S HGQKG +G    QE+ PFT +GI PDI+INPHA PSR T G L+E  L K    +G
Sbjct: 751  FASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKVATLIG 810

Query: 980  KGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQ 1039
                   +  ATPF   +V+++++ L + G+   G E +Y G TG  +++ +++GPT+YQ
Sbjct: 811  N------EGDATPFTDLTVESVSQFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQ 864

Query: 1040 RLIHMSEDKVKFRNTGPVHPLTRQPVADRKR 1070
            RL HM +DK+  R  GPV  LTRQPV  R R
Sbjct: 865  RLKHMVDDKIHSRARGPVQILTRQPVEGRSR 895


>gi|83765718|dbj|BAE55861.1| unnamed protein product [Aspergillus oryzae RIB40]
          Length = 1180

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 363/1221 (29%), Positives = 573/1221 (46%), Gaps = 189/1221 (15%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN  ++  L+K  +S   +I+    D +           ++F  +
Sbjct: 63   AFLKVKGLVKQHIDSYNYLVEVQLKKIVES--SSIIRSDIDHN---------FYIKFTDI 111

Query: 92   TLDKPSFF-----AGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKT 146
             L  P         G G     + P   RL++ TY++ ++V  ++ +  ++RV       
Sbjct: 112  YLGAPRRADEQQDVGPGFTGSTVSPHECRLRDTTYAAPIQVDFEY-IRGRQRV------- 163

Query: 147  GREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKG 200
                         + T   IGR+PVM++S  C +      +      C  D GGYFI+ G
Sbjct: 164  -------------KKTGCSIGRMPVMLRSSKCVLSDKTPAEMTVLDECPLDPGGYFIVNG 210

Query: 201  AEKVFVAQEQICLKRLWVSNS------MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGE 254
             EKV + QEQ+   R+ V              +  +E K    IV          +K  +
Sbjct: 211  TEKVILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSKSYIV----------LKKDK 260

Query: 255  KVLSVYFLSTEIPIWILFFALGVSSDKEIVNLI----DFTCEDCSI-------------- 296
              +    LS +IPI IL  A+G+ +DKE++ L+        ED +I              
Sbjct: 261  LYVKHNVLSEDIPIVILLKAMGIHTDKEMLLLVAGIDKVYQEDFAINFEEAIKLGIYTQQ 320

Query: 297  --LNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGT 354
              L+ + + I     K + +R+      +V + +        E+    + +++       
Sbjct: 321  QALDWIGSRIKINRGKQNNYRR-----THVQEAV--------EAIASVIISHIEVKDMNF 367

Query: 355  KQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKR 410
            + KA ++ +M + +L A +     D+RD   NKRLELAG+LL    E   K      +  
Sbjct: 368  RPKAVYVAHMARRVLMAKNDPSLVDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDIKMN 427

Query: 411  MAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRA 470
            + K L +    +         + ++ +T G++RA STG WS    R ER +G+   L R 
Sbjct: 428  VDKVLNKRNRAEAFDAWTVMSMHSNHITQGMNRAISTGNWSLKRFRMER-AGVTHVLSRL 486

Query: 471  NPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVS 530
            + +  L  + R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL +   ++
Sbjct: 487  SYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCLADTPEGEACGLVKNLALMTHIT 546

Query: 531  TSILE-PIFEQLFNSGMEKLADDASYSLGGK-------FKVFVDGDWIGVCKDSLSFVSE 582
            T+  E PI   +F  G E ++     +LGGK       + + ++G  + + +   SF++ 
Sbjct: 547  TNDEEGPIRNLIFMLGAEDIS-----TLGGKELYGPGCYTISINGTPMALTRRPKSFLNA 601

Query: 583  LRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGK 635
             RR RR   +   V I  +  Q  V +  D GRI RPL+VVEN GK       +K L   
Sbjct: 602  FRRLRRMGRISEFVSIYINHHQRAVHVATDDGRICRPLIVVEN-GKNRVRSHHLKKLREG 660

Query: 636  NYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSC 695
              +F   L  G++E +   EE D   A       KDI +      TH E++   +LG   
Sbjct: 661  TMSFDDFLAQGLVEYLDVNEENDSLIA----IYEKDITEAT----THLEIEPFTVLGAVA 712

Query: 696  GIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCL 755
            G+IP+ +H+ + R  YQ      QAIG   +N  +R+D++ + + YPQ+P+ ++   +  
Sbjct: 713  GLIPYPHHNQSPRNTYQCAM-GKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIE-- 769

Query: 756  GKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKA 815
                     +    +L  G NA+VAV  + GY+ ED+LV+N+ S++RG  R +  +   A
Sbjct: 770  ---------LTKYDQLPAGHNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFKKSVA 820

Query: 816  EVDN-----KEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKY 870
             + +     K++ +     +D        + I +   L+ DG   +G  + +G++ I K 
Sbjct: 821  NLKSYSNGTKDILMPPEYDND--------APIRKHALLESDGLAAVGEQVNAGEVYINKS 872

Query: 871  ADS--------GADHSIKLKHTERGM---------VQKVVLSSNDDGKNFSVVSLRQVRS 913
                       G+D    +K+T   M         + +V++S+ ++      V  RQ R 
Sbjct: 873  TPDQSLASGFPGSDMGRPVKYTPTPMTYKLHDPAYIDQVLVSTTENENQLIKVLTRQTRR 932

Query: 914  PCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGK 973
            P +GDKFSS HGQKGV+G +  Q + PFT QGI PDI++NPH FPSR T G++LE   GK
Sbjct: 933  PEVGDKFSSRHGQKGVVGIIADQADMPFTDQGINPDIIMNPHGFPSRMTVGKMLELVAGK 992

Query: 974  GIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFI 1033
                   G+ +G   Y T F    V+ +++ L   GFS  G + L  G TGE +   +F 
Sbjct: 993  A------GVLAGQHGYGTCFGGSPVEEMSQILIDKGFSYGGKDYLTSGITGEALPFYVFT 1046

Query: 1034 GPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL 1093
            GP +YQ+L HM +DK+  R  GP   LTRQP   R R GG++ GEMERDCLIA+G +  L
Sbjct: 1047 GPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLL 1106

Query: 1094 HERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAK 1153
             ERL   SD +++ +C +C  +  +              +C+ C S   +VK  +PY AK
Sbjct: 1107 LERLMISSDRHEIDVCEQCGFMGYL-------------NWCQRCKSSRSVVKMAIPYAAK 1153

Query: 1154 LLCQELFSMGIT--LKFDTEF 1172
            LL QEL SM +T  LK + EF
Sbjct: 1154 LLIQELMSMNVTARLKLEDEF 1174


>gi|317139935|ref|XP_001817863.2| DNA-directed RNA polymerase III subunit RET1 [Aspergillus oryzae
            RIB40]
          Length = 1218

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 364/1228 (29%), Positives = 578/1228 (47%), Gaps = 203/1228 (16%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN  ++  L+K  +S   +I+    D +           ++F  +
Sbjct: 101  AFLKVKGLVKQHIDSYNYLVEVQLKKIVES--SSIIRSDIDHN---------FYIKFTDI 149

Query: 92   TLDKPSFF-----AGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKT 146
             L  P         G G     + P   RL++ TY++ ++V  ++ +  ++RV       
Sbjct: 150  YLGAPRRADEQQDVGPGFTGSTVSPHECRLRDTTYAAPIQVDFEY-IRGRQRV------- 201

Query: 147  GREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKG 200
                         + T   IGR+PVM++S  C +      +      C  D GGYFI+ G
Sbjct: 202  -------------KKTGCSIGRMPVMLRSSKCVLSDKTPAEMTVLDECPLDPGGYFIVNG 248

Query: 201  AEKVFVAQEQICLKRLWVSNS------MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGE 254
             EKV + QEQ+   R+ V              +  +E K    IV          +K  +
Sbjct: 249  TEKVILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSKSYIV----------LKKDK 298

Query: 255  KVLSVYFLSTEIPIWILFFALGVSSDKEIVNLI----DFTCEDCSI-------------- 296
              +    LS +IPI IL  A+G+ +DKE++ L+        ED +I              
Sbjct: 299  LYVKHNVLSEDIPIVILLKAMGIHTDKEMLLLVAGIDKVYQEDFAINFEEAIKLGIYTQQ 358

Query: 297  --LNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGT 354
              L+ + + I     K + +R+      +V + +        E+    + +++       
Sbjct: 359  QALDWIGSRIKINRGKQNNYRR-----THVQEAV--------EAIASVIISHIEVKDMNF 405

Query: 355  KQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLER-----------ELKVH 403
            + KA ++ +M + +L A +     D+RD   NKRLELAG+LL             ++K++
Sbjct: 406  RPKAVYVAHMARRVLMAKNDPSLVDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDIKMN 465

Query: 404  IAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGI 463
            +     +  +A   D +   TV      + ++ +T G++RA STG WS    R ER +G+
Sbjct: 466  VDKVLNKRNRAEAFDAW---TV----MSMHSNHITQGMNRAISTGNWSLKRFRMER-AGV 517

Query: 464  VANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNL 523
               L R + +  L  + R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL
Sbjct: 518  THVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCLADTPEGEACGLVKNL 577

Query: 524  GVTGLVSTSILE-PIFEQLFNSGMEKLADDASYSLGGK-------FKVFVDGDWIGVCKD 575
             +   ++T+  E PI   +F  G E ++     +LGGK       + + ++G  + + + 
Sbjct: 578  ALMTHITTNDEEGPIRNLIFMLGAEDIS-----TLGGKELYGPGCYTISINGTPMALTRR 632

Query: 576  SLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK------- 628
              SF++  RR RR   +   V I  +  Q  V +  D GRI RPL+VVEN GK       
Sbjct: 633  PKSFLNAFRRLRRMGRISEFVSIYINHHQRAVHVATDDGRICRPLIVVEN-GKNRVRSHH 691

Query: 629  IKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMS 688
            +K L     +F   L  G++E +   EE D      I    KDI +      TH E++  
Sbjct: 692  LKKLREGTMSFDDFLAQGLVEYLDVNEENDSL----IAIYEKDITEAT----THLEIEPF 743

Query: 689  FLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFR 748
             +LG   G+IP+ +H+ + R  YQ      QAIG   +N  +R+D++ + + YPQ+P+ +
Sbjct: 744  TVLGAVAGLIPYPHHNQSPRNTYQC-AMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVK 802

Query: 749  TMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSE 808
            +   +           +    +L  G NA+VAV  + GY+ ED+LV+N+ S++RG  R +
Sbjct: 803  SRTIE-----------LTKYDQLPAGHNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQ 851

Query: 809  HIRSYKAEVDN-----KEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSG 863
              +   A + +     K++ +     +D        + I +   L+ DG   +G  + +G
Sbjct: 852  VFKKSVANLKSYSNGTKDILMPPEYDND--------APIRKHALLESDGLAAVGEQVNAG 903

Query: 864  DIVIGKYADS--------GADHSIKLKHTERGM---------VQKVVLSSNDDGKNFSVV 906
            ++ I K            G+D    +K+T   M         + +V++S+ ++      V
Sbjct: 904  EVYINKSTPDQSLASGFPGSDMGRPVKYTPTPMTYKLHDPAYIDQVLVSTTENENQLIKV 963

Query: 907  SLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQL 966
              RQ R P +GDKFSS HGQKGV+G +  Q + PFT QGI PDI++NPH FPSR T G++
Sbjct: 964  LTRQTRRPEVGDKFSSRHGQKGVVGIIADQADMPFTDQGINPDIIMNPHGFPSRMTVGKM 1023

Query: 967  LEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEM 1026
            LE   GK       G+ +G   Y T F    V+ +++ L   GFS  G + L  G TGE 
Sbjct: 1024 LELVAGKA------GVLAGQHGYGTCFGGSPVEEMSQILIDKGFSYGGKDYLTSGITGEA 1077

Query: 1027 VRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIA 1086
            +   +F GP +YQ+L HM +DK+  R  GP   LTRQP   R R GG++ GEMERDCLIA
Sbjct: 1078 LPFYVFTGPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIA 1137

Query: 1087 HGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKA 1146
            +G +  L ERL   SD +++ +C +C  +  +              +C+ C S   +VK 
Sbjct: 1138 YGTSQLLLERLMISSDRHEIDVCEQCGFMGYL-------------NWCQRCKSSRSVVKM 1184

Query: 1147 NVPYGAKLLCQELFSMGIT--LKFDTEF 1172
             +PY AKLL QEL SM +T  LK + EF
Sbjct: 1185 AIPYAAKLLIQELMSMNVTARLKLEDEF 1212


>gi|336374505|gb|EGO02842.1| hypothetical protein SERLA73DRAFT_84701 [Serpula lacrymans var.
            lacrymans S7.3]
 gi|336387393|gb|EGO28538.1| hypothetical protein SERLADRAFT_359856 [Serpula lacrymans var.
            lacrymans S7.9]
          Length = 1162

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 360/1199 (30%), Positives = 550/1199 (45%), Gaps = 151/1199 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETI--VEPGYDPSKKGEGEWRYASMRFG 89
            +F    GLV   I+S+N F+   ++    +  +    V+P +         W    +++ 
Sbjct: 40   AFLKVKGLVKQHIDSFNYFVDVDIKNIVKANNKVTSDVDPRF---------W----LKYT 86

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
             + +  P     +  D+  + P   RL+++TYS+ + V +Q   YT+ +    +      
Sbjct: 87   DINVGYPDRTDLDAIDK-SITPHECRLRDITYSAPVVVTIQ---YTRGKSVVRR------ 136

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG------DCDFDHGGYFIIKGAEK 203
                         N+ IGR+P+M++S+ C + G  +       +C  D GGYF++KG EK
Sbjct: 137  ------------PNVNIGRLPIMLRSNKCILTGKNEAQLARMTECPLDPGGYFVVKGTEK 184

Query: 204  VFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLS 263
            V + QEQ+   R+ V       V   S        ++      +   K G+  L    + 
Sbjct: 185  VILVQEQLSKNRIIVETDSVKGVVQASCTSSTHGGLK---SKTYVATKKGKIYLRHNSIH 241

Query: 264  TEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKY 323
             ++PI I   ALG+ +DKEI+ L   T  +       F++  +   K   F     AL++
Sbjct: 242  EDVPIVIALKALGIQADKEILLL---TAGNTEAYKSAFSANLEEAAKLGVFTH-HQALEW 297

Query: 324  VDKLIK------GTTFPPGESTEECMNTYLFPSLH----GTKQKARFLGYMVKCLLQAYS 373
            +   +K      G   P  E   E + T +   +       + KA F+  M + +L A  
Sbjct: 298  IGTRVKVNRKVVGPRRPAWEEALEALATIVLAHVPVKGLDLRSKAIFVATMTRRVLMAMD 357

Query: 374  GRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDRTVRPIE 429
              +  D+RD   NKRLELAG+LL    E   K   ++ +  + K L++    +       
Sbjct: 358  DEKMVDDRDYVGNKRLELAGQLLALLFEDLFKTFNSNLKSSIDKVLKKPSRTNEFDAFNT 417

Query: 430  YYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYT 489
                   +T+G  RA STG WS    + ER +G+   L R + +  L  + R   Q + T
Sbjct: 418  MQFQGDHITSGFIRAISTGNWSLKRFKMER-AGVTHVLSRLSFISALGMMTRISSQFEKT 476

Query: 490  GKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEK 548
             KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + E PI    F  G+E 
Sbjct: 477  RKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVEEEPIVRLAFMLGVED 536

Query: 549  LADDASYSLGG--KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSE 606
            ++      + G   F V V+G  +G+ +    FVS  RR RR   L   V +  +     
Sbjct: 537  ISLATGTEIYGPHTFVVNVNGTIVGLTRYPTRFVSNFRRLRRAGRLSEFVGVYINHHHHA 596

Query: 607  VRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCC 660
            V I  D GRI RP+++VE+         I  L+    TF   L  G++E +   EE D  
Sbjct: 597  VHIASDGGRICRPMIIVESGRPRVTSDHIMLLKKGVATFDDFLRKGLVEYLDVNEENDS- 655

Query: 661  TAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQA 720
                  Y+     D  P   TH E++   LLG   G+IP+ +H+ + R  YQ      QA
Sbjct: 656  ------YIALYESDIVPTT-THLEIEPFTLLGAVAGLIPYPHHNQSPRNTYQC-AMGKQA 707

Query: 721  IGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVA 780
            IG    N   R+DTL +   YPQ+P+ +T   + +G              L  GQNA VA
Sbjct: 708  IGAIGYNQFNRIDTLLYLSVYPQQPMVKTKTIELIG-----------YDRLPAGQNATVA 756

Query: 781  VNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVN-FGKIQ 839
            V  + GY+ ED+L++N+ASL+RG  R + +R     +         R +D  ++  G+IQ
Sbjct: 757  VMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLIRKYPNGTFDRLADAPLDENGQIQ 816

Query: 840  SKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHS---------------IKLKHT 884
             K    D +  DG   +G  +  GD+ I K   + A+ +               +  K  
Sbjct: 817  KK---YDIVQLDGLAGVGERVDPGDVYINKQTPTNANDNSFTGQAAAVPYKNSPMTYKSP 873

Query: 885  ERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQ 944
              G + KV++S  ++ +    V +RQ R P LGDKFSS HGQKGV G + +QE+ PF  Q
Sbjct: 874  VAGYIDKVLVSDTENDQTLIKVLIRQTRRPELGDKFSSRHGQKGVCGLIVNQEDMPFNDQ 933

Query: 945  GIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQ 1004
            GI PD ++NPH FPSR T G+++E   GK       G+ SG  +Y T F    V+ ++  
Sbjct: 934  GINPDTIMNPHGFPSRMTVGKMIELLAGKA------GVLSGKLQYGTAFGGSKVEDMSRI 987

Query: 1005 LHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLI-------------------HMS 1045
            L   GF+  G + L  G TGE + + ++ GP +YQ+L                    HM 
Sbjct: 988  LIEKGFNYAGKDMLTSGITGEPMEAYVYFGPIYYQKLSEIVVAYLSSSLNSSNLATEHMV 1047

Query: 1046 EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQ 1105
             DK+  R  GP   LTRQP   R R GG++ GEMERDCLI +GA   L ERL   SD ++
Sbjct: 1048 MDKMHARARGPRATLTRQPTEGRSREGGLRLGEMERDCLIGYGATQLLLERLMISSDKFE 1107

Query: 1106 MHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
            ++ C++C             G      +C  C S   + +  +PY AKLL QEL +M +
Sbjct: 1108 VNACQEC-------------GLMGYNGWCTYCKSSKRMAQLTIPYAAKLLFQELMAMNV 1153


>gi|317025401|ref|XP_001388998.2| DNA-directed RNA polymerase III subunit RET1 [Aspergillus niger CBS
            513.88]
          Length = 1226

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 368/1221 (30%), Positives = 565/1221 (46%), Gaps = 189/1221 (15%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN  ++  L+K  +S   + +    D +           ++F  +
Sbjct: 109  AFLKVKGLVKQHIDSYNYLVEVQLKKIVES--SSTIRSDVDHT---------FYIKFTNI 157

Query: 92   TLDKPSFFAGNGGDEHDMF------PRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
             L  P   A    D    F      P+  RL++ TY++   ++V F+           + 
Sbjct: 158  YLGFPRR-ADEPQDARADFTYSTVSPQECRLRDTTYAA--PIQVDFE-----------YV 203

Query: 146  TGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIK 199
             GR++ ++K         + IGR+PVM++S  C +      +      C  D GGYFI+ 
Sbjct: 204  RGRQRVMRK--------GVAIGRMPVMLRSSKCVLANKTPAEMTVLNECPLDPGGYFIVN 255

Query: 200  GAEKVFVAQEQICLKRLWVSNS------MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGG 253
            G EKV + QEQ+   R+ V              +  +E K    IV          +K  
Sbjct: 256  GTEKVILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSKSYIV----------LKKD 305

Query: 254  EKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLI----DFTCEDCSI------------- 296
            +  +    LS +IPI IL  A+G+ +DKE++ L+        ED +I             
Sbjct: 306  KLYVKHNVLSEDIPIVILLKAMGIHTDKEMLLLVAGVDKVYQEDFAINFEEAIKLGIYTQ 365

Query: 297  ---LNILFASIHDADNKCDEFRKG--RNALKYVDKLIKGTTFPPGESTEECMNTYLFPSL 351
               L+ + A I     +   +R+   + A++ +  +I         S  E  N    P  
Sbjct: 366  QQALDWIGARIKINRKQSPSYRRTHVQEAVEAIASVII--------SHIEVKNMNFRP-- 415

Query: 352  HGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLER-----------EL 400
                 KA ++ +M + +L A +     D+RD   NKRLELAG+LL             ++
Sbjct: 416  -----KAVYVAHMARRVLMAKNDASLVDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDI 470

Query: 401  KVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERI 460
            K++I     +  +A   D Y   T       + ++ +T G++RA STG WS    R ER 
Sbjct: 471  KMNIDKVLNKRNRAEAFDAYSVIT-------MHSNHITQGMNRAISTGNWSLKRFRMER- 522

Query: 461  SGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLV 520
            +G+   L R + +  L  + R   Q + T KV   R   PS +G +C   TP+GE CGLV
Sbjct: 523  AGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCPADTPEGEACGLV 582

Query: 521  KNLGVTGLVSTSILE-PIFEQLFNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSL 577
            KNL +   ++T+  E P+   +F  G E +       L G   + + ++G    + +   
Sbjct: 583  KNLALMTHITTNDEEGPVRNLIFMLGAEDIQTVGGKELYGPGCYTISINGTPTALTRRPK 642

Query: 578  SFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IK 630
             F+   RR RR   +   V I  +  Q  V +  D GRI RPL+VVEN GK       ++
Sbjct: 643  YFLDAFRRLRRMGRISEFVSIYINHHQRAVHVATDDGRICRPLIVVEN-GKSRVNAQHLE 701

Query: 631  SLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFL 690
             L      F   L  G++E +   EE D      I    KDI +      TH E++   +
Sbjct: 702  KLRNGTMQFDDFLAQGLVEYLDVNEENDSL----ISIYEKDITETT----THLEIEPFTV 753

Query: 691  LGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTM 750
            LG   G+IP+ +H+ + R  YQ      QAIG   +N  +R+D++ + + YPQ+P+ ++ 
Sbjct: 754  LGAVAGLIPYPHHNQSPRNTYQC-AMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSR 812

Query: 751  ISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHI 810
              +           +    +L  GQNAIVAV  + GY+ ED+LV+N+ S++RG  R +  
Sbjct: 813  TIE-----------LTKYDQLPAGQNAIVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVF 861

Query: 811  RSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGK- 869
            R Y   + +     K R S       +  + I +   L+ DG   +G  + +G++ I K 
Sbjct: 862  RKYVTNLKSYSNGTKDRLSGPTY---ENDAPIRKHALLESDGLAAVGEQVNAGEVYINKS 918

Query: 870  ---------YADSGADHSIKLKHT-------ERGMVQKVVLSSNDDGKNFSVVSLRQVRS 913
                     + +S A   +    T       +   + KV++S  ++      V  RQ R 
Sbjct: 919  TPDQSMSSGFPNSDAGRPVSYMPTPMTYKLPDPAYIDKVMVSVTENENQLVKVLTRQTRR 978

Query: 914  PCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGK 973
            P +GDKFSS HGQKGV+G +  Q + PFT  GI PDI++NPH FPSR T G++LE   GK
Sbjct: 979  PEVGDKFSSRHGQKGVVGIIADQADMPFTDTGINPDIIMNPHGFPSRMTVGKMLELVAGK 1038

Query: 974  GIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFI 1033
                   G+ +G   Y T F    V  +++ L   GFS  G + L  G TGE +   +F 
Sbjct: 1039 A------GVLAGQHGYGTCFGGSPVQEMSQILIDNGFSYGGKDYLTSGITGEALPFYVFT 1092

Query: 1034 GPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL 1093
            GP +YQ+L HM +DK+  R  GP   LTRQP   R R GG++ GEMERDCLIA+G +  L
Sbjct: 1093 GPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLL 1152

Query: 1094 HERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAK 1153
             ERL   SD +++ +C +C  +  +              +C+ C S   +VK  +PY AK
Sbjct: 1153 LERLMISSDRHEIDVCEQCGFMGYL-------------NWCQRCKSSRSVVKMAIPYAAK 1199

Query: 1154 LLCQELFSMGIT--LKFDTEF 1172
            LL QEL SM +T  LK D EF
Sbjct: 1200 LLIQELMSMNVTARLKLDDEF 1220


>gi|67516079|ref|XP_657925.1| hypothetical protein AN0321.2 [Aspergillus nidulans FGSC A4]
 gi|40746571|gb|EAA65727.1| hypothetical protein AN0321.2 [Aspergillus nidulans FGSC A4]
          Length = 1656

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 365/1228 (29%), Positives = 571/1228 (46%), Gaps = 158/1228 (12%)

Query: 5    DNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGE 64
            +   TDP S        L  F +          GLV   I+SYN  ++  L+K  +S   
Sbjct: 521  NKSLTDPISTAKDKWNLLPAFLKVK--------GLVKQHIDSYNYLVEVQLKKIVESSNT 572

Query: 65   TIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSR 124
               +  ++   K    +     R  +    +  F      +E  + P   RL++ TY++ 
Sbjct: 573  IRSDVDHNFYIKFTDIYLGFPRRADEPQDVRTEF------EESTVTPHECRLRDTTYAAP 626

Query: 125  MKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVE 184
            ++V  ++               GR++  +K         + IGR+PVM++S  C +    
Sbjct: 627  IQVDFEY-------------IRGRQRVRRK--------GVSIGRMPVMLRSSKCVLGNKT 665

Query: 185  KG------DCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNS-----MGWTVAYKSENK 233
                    +C  D GGYFI+ G EKV + QEQ+   R+ V        +  +V   S  +
Sbjct: 666  PAQMTVLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVETDPKKEIVQASVTSSSNER 725

Query: 234  RNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLI------ 287
            +++  + L         K     +    LS +IPI IL  A+G+ +DKE++ L+      
Sbjct: 726  KSKSYIIL---------KKDRLYVKHNVLSEDIPIVILLKAMGIHTDKEMMLLVAGVDKV 776

Query: 288  ---DFTCEDCSILNI-LFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECM 343
               DF       + + +F      D      +  R  + Y    ++       E+    +
Sbjct: 777  YQEDFAINFEEAIKVGVFTQQQALDWIGSRIKINRKQMSYRRTHVQEAV----EAIASVI 832

Query: 344  NTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL----ERE 399
             +++       + KA ++  M + +L A +     D+RD   NKRLELAG+LL    E  
Sbjct: 833  ISHIEVKDMNFRPKAIYVANMARRVLMAKNDAALVDDRDYLGNKRLELAGQLLALLFEDL 892

Query: 400  LKVHIAHARKRMAKALQRDLYGDRTVRPIEYY----LDASILTNGLSRAFSTGAWSHPFK 455
             K      +  + K L +       V   + +    + ++ +T G++RA STG WS    
Sbjct: 893  FKKFCFDIKMNIDKVLNKR----NRVEAFDAWSVIGMHSNHITQGMNRAISTGNWSLKRF 948

Query: 456  RTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGE 515
            R ER +G+   L R + +  L  + R   Q + T KV   R   PS +G IC   TP+GE
Sbjct: 949  RMER-AGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMICLADTPEGE 1007

Query: 516  NCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKLADDASYSL--GGKFKVFVDGDWIGV 572
             CGLVKNL +   ++T+  E PI   +F  G E +       +   G + + ++G  + +
Sbjct: 1008 ACGLVKNLALMTHITTNDEEGPIKNLIFMLGAEDIQTVGGKEIYAPGSYTISINGTPMAL 1067

Query: 573  CKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK---- 628
             +    F++  RR RR   +   V I  +  Q  V +  D GRI RPL++VE+ GK    
Sbjct: 1068 TRRPKYFLNAFRRLRRMGRISEFVSIYINHHQRAVHVATDDGRICRPLIIVED-GKSRVK 1126

Query: 629  ---IKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCEL 685
               ++ L      F   L  G++E V   EE D      I    KDI D      TH E+
Sbjct: 1127 KHHLRKLRDGTMQFDDFLAQGLVEYVDVNEENDSL----IAIYEKDITDTT----THMEI 1178

Query: 686  DMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRP 745
            +   +LG   G+IP+ +H+ + R  YQ      QAIG   +N  +R+D++ + + YPQ+P
Sbjct: 1179 EPFTILGAVAGLIPYPHHNQSPRNTYQC-AMGKQAIGAIASNQFLRIDSILYLMVYPQKP 1237

Query: 746  LFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMF 805
            + ++   +           +    +L  GQNA VAV  + GY+ ED+LV+N+ S++RG  
Sbjct: 1238 MVKSRTIE-----------LTKYDQLPAGQNATVAVMSYSGYDIEDALVLNKGSVDRGFG 1286

Query: 806  RSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQ--SKIGRVDSLDDDGFPFIGANLQSG 863
            R +  R Y   V N  M+     + D+++    +  + I +   L+ DG   +G  + +G
Sbjct: 1287 RCQVFRKY---VTN--MKSYSNGTKDILSPPTYENDAPIRKHALLESDGLAAVGEQVNAG 1341

Query: 864  DIVIGKY------------ADSGADHS-----IKLKHTERGMVQKVVLSSNDDGKNFSVV 906
            ++ I K             +D+G   S     +  K  +   + KV++S+ ++      V
Sbjct: 1342 EVYINKSTPDQSMSSGMPGSDAGRPISYNPTPMTYKLPDPAYIDKVMISATENENQIIKV 1401

Query: 907  SLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQL 966
              RQ R P +GDKFSS HGQKGV G +  Q + PFT QGI PDI++NPH FPSR T G++
Sbjct: 1402 LTRQTRRPEVGDKFSSRHGQKGVTGIIVDQADMPFTDQGINPDIIMNPHGFPSRMTVGKM 1461

Query: 967  LEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEM 1026
            LE   GK       G+ SG   Y T F+   V+ +T+ L   GFS  G + L  G TGE 
Sbjct: 1462 LELVAGKA------GVLSGQHGYGTCFSGTPVEQMTQTLIDKGFSYGGKDYLTSGITGEA 1515

Query: 1027 VRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIA 1086
            +   +F GP +YQ+L HM +DK+  R  GP   LTRQP   R R GG++ GEMERDCLIA
Sbjct: 1516 LPFYVFTGPIYYQKLKHMVQDKMHSRARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIA 1575

Query: 1087 HGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKA 1146
            +G +  L ERL   SD +++ +C +C  +  +              +C+ C S   +VK 
Sbjct: 1576 YGTSQLLLERLMISSDRHEVDVCEQCGFMGYL-------------NWCQRCKSSRSVVKM 1622

Query: 1147 NVPYGAKLLCQELFSMGIT--LKFDTEF 1172
             +PY AKLL QEL SM +T  LK + EF
Sbjct: 1623 VIPYAAKLLIQELMSMNVTARLKLEDEF 1650


>gi|223994131|ref|XP_002286749.1| DNA directed RNA polymerase III, second largest subunit
            [Thalassiosira pseudonana CCMP1335]
 gi|220978064|gb|EED96390.1| DNA directed RNA polymerase III, second largest subunit
            [Thalassiosira pseudonana CCMP1335]
          Length = 1108

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 349/1180 (29%), Positives = 563/1180 (47%), Gaps = 140/1180 (11%)

Query: 42   HQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAG 101
              I+S++ F+   +++        ++   YDP    +   RY     G+ ++D+ S+   
Sbjct: 3    QHIDSFDHFVNVEMRQIVQVSRWQLIRSDYDP----KFYLRYTDCWVGEPSIDEDSYATT 58

Query: 102  NGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDET 161
                     P   RL++ TYS+ + V V             ++  GR+  ++K+V+    
Sbjct: 59   QAT------PFQCRLRDCTYSAPIYVNV-------------RYTRGRQIVVKKKVM---- 95

Query: 162  TNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKR 215
                IGR+P+M++S  C ++        +  +C +D GGYF+IKG EKV + QEQ+   R
Sbjct: 96   ----IGRMPIMLRSSKCLLRDKSERELAQMKECPYDPGGYFVIKGVEKVILIQEQLSKNR 151

Query: 216  LWVS--NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFF 273
            + +   +  G   A  + + R R          +  IK G   L    L+ ++PI +   
Sbjct: 152  VIIEEDSKTGCVSASITSSTRER------KSKAYIFIKNGRLFLKHNTLAEDVPICVAMK 205

Query: 274  ALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIK---- 329
            A+GV SD E V  +    E   +++ L  S+ +           R+ALKY+   ++    
Sbjct: 206  AMGVESDLEFVQSVGSEPE---VIDALALSLEEPSKL--GIVTQRHALKYIGNKMRAKRG 260

Query: 330  --GTT---FPPGESTEECMNTYL--FPSLH-GTKQKARFLGYMVKCLLQAYSGRRKCDNR 381
              G+T    P  E+ +   N  L   P ++     K  ++G++V+ L+    G+   D++
Sbjct: 261  AFGSTRKLSPEDEARDVFANVVLSHVPVVNFDFHAKTIYIGHIVRRLVMVQLGKSSLDDK 320

Query: 382  DDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASI----L 437
            D + NKRLELAG LL    +    H    + K  Q D+   +  R   + +  +I    +
Sbjct: 321  DYYGNKRLELAGSLLSLLFEDLFKHFNTDLKK--QTDMVLSKPNRAQAFDVIKTIRPDSI 378

Query: 438  TNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARY 497
              G+  A S+G W     R +R +G+   L R + +  L  + R   Q + T KV   R 
Sbjct: 379  AYGMMSAISSGNWVLKRFRMDR-AGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRS 437

Query: 498  PHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLF-NSGMEKLADDASYS 556
              PS WG +C   TP+GE CGLVKNL +   ++T       E+L  + G+E +   + + 
Sbjct: 438  LQPSQWGMLCPADTPEGEACGLVKNLALLAHITTDEESEAIERLCRDCGVEDVTLLSGHE 497

Query: 557  LGGK--FKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAG 614
            +  +  F V ++G  +GV    L  V  LR  RR+ ++   V +   + Q  V I  D G
Sbjct: 498  IHSRNAFLVLLNGLIVGVHTRPLWLVKSLRSLRRQGQMGEFVSLYLHDGQKAVHIATDGG 557

Query: 615  RILRPLLVVENMGK--------IKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIK 666
            R+ RPL++V+            I+ L       + LL  G++E V   EE +C  A   +
Sbjct: 558  RVCRPLIIVDEKTALPRLKQVHIEGLALGTIHIKDLLRQGVVEYVDVNEENNCLIAVTER 617

Query: 667  YLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTT 726
             L       + + +TH E+D   LLG+  G+IP  +H+ + R  YQS     QAIG    
Sbjct: 618  EL-------EWMAYTHLEIDPMTLLGVVAGLIPNPHHNQSPRNTYQS-AMGKQAIGTVAI 669

Query: 727  NPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLG 786
            N   R D + + + YP +P+ +T   D           ++    +  GQNA +AV  + G
Sbjct: 670  NQYSRFDGMLYTMVYPHKPMVKTRTLD-----------LINFDNIPAGQNACIAVMSYSG 718

Query: 787  YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRS--SDDMVNF--GKIQSKI 842
            Y+ ED++V+N+AS++RG  R   ++  +A V   +     R+  + D   F  G+   + 
Sbjct: 719  YDIEDAVVLNKASVDRGFGRCMVLKKSQASVRRYQNGTMDRTCGAPDPSAFPSGEEDKRY 778

Query: 843  GRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSI----KLKHTERGM---------V 889
             R   +D DG   +G  +++G +++ K + +     +    ++ +   GM         V
Sbjct: 779  ARYRGIDKDGLCMVGELMENGTVMVNKESPTDTSTPVERLAQVSYKYSGMSYRSSAPSYV 838

Query: 890  QKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPD 949
             +V++SSN++ +    V LRQVR P LGDKF+S HGQKGV G +  Q + PF  QG  PD
Sbjct: 839  DRVLISSNENEQFLIKVMLRQVRRPELGDKFASRHGQKGVCGLIVPQVDMPFNEQGFPPD 898

Query: 950  IVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF-----ATPSVDAITEQ 1004
            +++NPH FPSR T G+L+E  +GK       G+  G + YA+ F     +T +V +    
Sbjct: 899  LIMNPHGFPSRMTVGKLIELLVGKA------GVFEGRQAYASAFGEEFGSTDTVQSAELA 952

Query: 1005 LHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQP 1064
            L R G +  G +  Y G  G  + + IF GP FYQ+L HM  DK+  R+ GP   LTRQP
Sbjct: 953  LIRNGLNYTGKDIFYSGVNGAPLDAYIFSGPVFYQKLKHMVLDKMHARSRGPRAVLTRQP 1012

Query: 1065 VADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVG 1124
               R R GG++ GEMERDCLIA+GA+  + ERL   SD++   +C  C            
Sbjct: 1013 TEGRSRDGGLRLGEMERDCLIAYGASNLIMERLMHSSDAFSASVCMTC------------ 1060

Query: 1125 GGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
             G      +C+ C SG+ +    +PY  KLL QEL +M +
Sbjct: 1061 -GLLQYQNWCQYCRSGEKVSDIRLPYACKLLFQELQAMNV 1099


>gi|45545315|gb|AAS67505.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Cenococcum geophilum]
          Length = 935

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 329/975 (33%), Positives = 481/975 (49%), Gaps = 139/975 (14%)

Query: 201  AEKVFVAQEQICLKRLWV----SNSMGWTVAYKSE-NKRNRLI----VRLVDMSKFEDIK 251
            +EKV +AQE+     + V       + WT   +S   K +RLI    ++  + S      
Sbjct: 1    SEKVLIAQERSAANIVQVFRKKQGPIPWTAEIRSAVEKGSRLISTFNIKWAESSLIAKRA 60

Query: 252  GGEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASI------ 304
             G    ++  ++  ++P+ ++F ALGV SD++I+N I +   D  +L +L  SI      
Sbjct: 61   PGPFAYAILPYIRADVPMSVVFRALGVVSDEDILNHIVYDRNDTQMLELLKPSIEEGSMI 120

Query: 305  HDADNKCDEFRKGRNALKYVDKLIKGT------TFPPGESTEECMNTYLFPSLHGTKQKA 358
             D +N  D   K  ++    DK +K         F P  S +E  +T          +KA
Sbjct: 121  QDRENALDWIAKRGSSTGTKDKRLKYARDIMQREFLPHISQKEGQDT----------RKA 170

Query: 359  RFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRD 418
             FLGYM+  LLQ   GRR  D+RD F  KRL+LAG L+    ++      + + K LQ+ 
Sbjct: 171  FFLGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRILFIKLTRDVYKYLQKC 230

Query: 419  LYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVD 478
            +  ++    I+  + AS++TNGL  + +TG W    K     +G+   L R     TL  
Sbjct: 231  VENNQEFS-IQMAVKASLITNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTYASTLSH 289

Query: 479  LRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPI 537
            LRRT   V   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   VS  S   PI
Sbjct: 290  LRRTNTPVGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGSESTPI 349

Query: 538  FEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVE 597
             + +    ME L +          KVFV+G W+GV       V+ ++  RR   L  ++ 
Sbjct: 350  TDFMSQRNMELLEEYDPVVNPSATKVFVNGVWVGVHSQPSQLVTVVQELRRNGTLSYEMS 409

Query: 598  IKRDELQSEVRIFMDAGRILRPLLVVEN-------------MGKIKSL------------ 632
            + RD    E +IF DAGR++RPL V+EN                I+ L            
Sbjct: 410  LIRDIRDREFKIFTDAGRVMRPLFVIENNPTKTNRGSLVLNKTHIEKLHEDKEIDVSGLN 469

Query: 633  ----EGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDK------------- 675
                E   + ++ LL  G++E +  EEEE       I    +D+ED              
Sbjct: 470  DEDAEKAKFGWKGLLHSGVVEYLDAEEEETAM----IIMTPEDLEDHHRVSAGTMIYDDG 525

Query: 676  ----KPIK---------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIG 722
                K IK         FTHCE+  S +LG+   IIPF +H+ + R  YQS     QA+G
Sbjct: 526  GDPHKRIKPKPNPTVKTFTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS-AMGKQAMG 584

Query: 723  FPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVN 782
               TN ++R++T+ + L+YPQ+PL  T   + L              EL  GQNAIVA+ 
Sbjct: 585  VALTNYALRMETMMNVLYYPQKPLATTRSMEYLK-----------FRELPAGQNAIVAIA 633

Query: 783  VHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK----- 837
             + GYNQEDS++MN++S++RG+FRS   RSY         Q KR   + +  F K     
Sbjct: 634  CYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTE-------QEKRIGVNVLEQFEKPTRSD 686

Query: 838  -IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---------------DSGADHSIKL 881
             ++ K G  D LDDDG    G  +   DI+IGK A                +  D S  L
Sbjct: 687  TLRMKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIPPDAKELGQKTIMHTKRDVSTPL 746

Query: 882  KHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPF 941
            + TE G+V +V+ ++N +G  F  V  R  + P +GDKF+S HGQKG +G    QE+ PF
Sbjct: 747  RSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGVTYRQEDMPF 806

Query: 942  TIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAI 1001
            T +G+ PD++INPHA PSR T   L+E  L K       G   G +  ATPF   +V+++
Sbjct: 807  TREGLTPDLIINPHAIPSRMTIAHLIECLLSK------VGSLRGCEGDATPFTDVTVESV 860

Query: 1002 TEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLT 1061
            ++ L   G+   G E +Y+G TG+ + + +F+GPT+YQRL HM +DK+  R  GP+  LT
Sbjct: 861  SKLLREHGYQSRGFEVMYNGHTGKKMVAQVFLGPTYYQRLRHMVDDKIHARARGPLQILT 920

Query: 1062 RQPVADRKRFGGIKF 1076
            RQPV  R R GG++F
Sbjct: 921  RQPVEGRARDGGLRF 935


>gi|350638131|gb|EHA26487.1| hypothetical protein ASPNIDRAFT_171679 [Aspergillus niger ATCC 1015]
          Length = 1201

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 368/1221 (30%), Positives = 565/1221 (46%), Gaps = 189/1221 (15%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN  ++  L+K  +S   + +    D +           ++F  +
Sbjct: 84   AFLKVKGLVKQHIDSYNYLVEVQLKKIVES--SSTIRSDVDHT---------FYIKFTNI 132

Query: 92   TLDKPSFFAGNGGDEHDMF------PRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
             L  P   A    D    F      P+  RL++ TY++   ++V F+           + 
Sbjct: 133  YLGFPRR-ADEPQDARADFTYSTVSPQECRLRDTTYAA--PIQVDFE-----------YV 178

Query: 146  TGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIK 199
             GR++ ++K         + IGR+PVM++S  C +      +      C  D GGYFI+ 
Sbjct: 179  RGRQRVMRK--------GVAIGRMPVMLRSSKCVLANKTPAEMTVLNECPLDPGGYFIVN 230

Query: 200  GAEKVFVAQEQICLKRLWVSNS------MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGG 253
            G EKV + QEQ+   R+ V              +  +E K    IV          +K  
Sbjct: 231  GTEKVILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSKSYIV----------LKKD 280

Query: 254  EKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLI----DFTCEDCSI------------- 296
            +  +    LS +IPI IL  A+G+ +DKE++ L+        ED +I             
Sbjct: 281  KLYVKHNVLSEDIPIVILLKAMGIHTDKEMLLLVAGVDKVYQEDFAINFEEAIKLGIYTQ 340

Query: 297  ---LNILFASIHDADNKCDEFRKG--RNALKYVDKLIKGTTFPPGESTEECMNTYLFPSL 351
               L+ + A I     +   +R+   + A++ +  +I         S  E  N    P  
Sbjct: 341  QQALDWIGARIKINRKQSPSYRRTHVQEAVEAIASVII--------SHIEVKNMNFRP-- 390

Query: 352  HGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLER-----------EL 400
                 KA ++ +M + +L A +     D+RD   NKRLELAG+LL             ++
Sbjct: 391  -----KAVYVAHMARRVLMAKNDASLVDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDI 445

Query: 401  KVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERI 460
            K++I     +  +A   D Y   T       + ++ +T G++RA STG WS    R ER 
Sbjct: 446  KMNIDKVLNKRNRAEAFDAYSVIT-------MHSNHITQGMNRAISTGNWSLKRFRMER- 497

Query: 461  SGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLV 520
            +G+   L R + +  L  + R   Q + T KV   R   PS +G +C   TP+GE CGLV
Sbjct: 498  AGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCPADTPEGEACGLV 557

Query: 521  KNLGVTGLVSTSILE-PIFEQLFNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSL 577
            KNL +   ++T+  E P+   +F  G E +       L G   + + ++G    + +   
Sbjct: 558  KNLALMTHITTNDEEGPVRNLIFMLGAEDIQTVGGKELYGPGCYTISINGTPTALTRRPK 617

Query: 578  SFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IK 630
             F+   RR RR   +   V I  +  Q  V +  D GRI RPL+VVEN GK       ++
Sbjct: 618  YFLDAFRRLRRMGRISEFVSIYINHHQRAVHVATDDGRICRPLIVVEN-GKSRVNAQHLE 676

Query: 631  SLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFL 690
             L      F   L  G++E +   EE D      I    KDI +      TH E++   +
Sbjct: 677  KLRNGTMQFDDFLAQGLVEYLDVNEENDSL----ISIYEKDITETT----THLEIEPFTV 728

Query: 691  LGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTM 750
            LG   G+IP+ +H+ + R  YQ      QAIG   +N  +R+D++ + + YPQ+P+ ++ 
Sbjct: 729  LGAVAGLIPYPHHNQSPRNTYQC-AMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSR 787

Query: 751  ISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHI 810
              +           +    +L  GQNAIVAV  + GY+ ED+LV+N+ S++RG  R +  
Sbjct: 788  TIE-----------LTKYDQLPAGQNAIVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVF 836

Query: 811  RSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGK- 869
            R Y   + +     K R S       +  + I +   L+ DG   +G  + +G++ I K 
Sbjct: 837  RKYVTNLKSYSNGTKDRLSGPTY---ENDAPIRKHALLESDGLAAVGEQVNAGEVYINKS 893

Query: 870  ---------YADSGADHSIKLKHT-------ERGMVQKVVLSSNDDGKNFSVVSLRQVRS 913
                     + +S A   +    T       +   + KV++S  ++      V  RQ R 
Sbjct: 894  TPDQSMSSGFPNSDAGRPVSYMPTPMTYKLPDPAYIDKVMVSVTENENQLVKVLTRQTRR 953

Query: 914  PCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGK 973
            P +GDKFSS HGQKGV+G +  Q + PFT  GI PDI++NPH FPSR T G++LE   GK
Sbjct: 954  PEVGDKFSSRHGQKGVVGIIADQADMPFTDTGINPDIIMNPHGFPSRMTVGKMLELVAGK 1013

Query: 974  GIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFI 1033
                   G+ +G   Y T F    V  +++ L   GFS  G + L  G TGE +   +F 
Sbjct: 1014 A------GVLAGQHGYGTCFGGSPVQEMSQILIDNGFSYGGKDYLTSGITGEALPFYVFT 1067

Query: 1034 GPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL 1093
            GP +YQ+L HM +DK+  R  GP   LTRQP   R R GG++ GEMERDCLIA+G +  L
Sbjct: 1068 GPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLL 1127

Query: 1094 HERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAK 1153
             ERL   SD +++ +C +C  +  +              +C+ C S   +VK  +PY AK
Sbjct: 1128 LERLMISSDRHEIDVCEQCGFMGYL-------------NWCQRCKSSRSVVKMAIPYAAK 1174

Query: 1154 LLCQELFSMGIT--LKFDTEF 1172
            LL QEL SM +T  LK D EF
Sbjct: 1175 LLIQELMSMNVTARLKLDDEF 1195


>gi|58618681|gb|AAW80835.1| RNA polymerase II second largest subunit [Cotylidia sp. MB5]
          Length = 892

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 305/888 (34%), Positives = 462/888 (52%), Gaps = 103/888 (11%)

Query: 251  KGGEKVL--SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDAD 308
            KG   V+  ++ ++  +IPIW++F ALGV SD++I+  I +  +D  +L +L   I D  
Sbjct: 37   KGSGNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGF 96

Query: 309  NKCDEFRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLH----GTKQK 357
               D       AL ++    +GT    G S E       E +   + P +        +K
Sbjct: 97   VIQDR----EIALDFIGN--RGTAT--GLSRERRLRYAQEILQKEMLPHVSMAEGSESKK 148

Query: 358  ARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQR 417
            A F GYM+  LL A   R + D+RD F  KRL+LAG LL    ++      K + + LQ+
Sbjct: 149  AYFFGYMIHRLLLAALERPELDDRDHFGKKRLDLAGPLLAGLFRMLFRKLTKDVYRYLQK 208

Query: 418  DLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLV 477
             + G +    I   +  + +TNGL  + +TG W    K     +G+   L R     TL 
Sbjct: 209  CVEGHKAFN-ISLAVKHNTITNGLKYSLATGNWGDQKKSMTTKAGVSQVLNRYTYASTLS 267

Query: 478  DLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEP 536
             LRR    +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  S+  P
Sbjct: 268  HLRRCNTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMATISVGSLSAP 327

Query: 537  IFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQV 596
            + E L   G+E L ++A +S     KVFV+G W+GV +D  + V  +++ RR+ ++  +V
Sbjct: 328  VIEFLEEWGLESLEENA-HSPIPLTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEV 386

Query: 597  EIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKN-----------------YTF 639
             + RD  + E+R++ DAGR+ RPL +VEN  +  +L+ K+                 Y +
Sbjct: 387  SVVRDIREKELRLYTDAGRVCRPLFIVEN--QQLALQKKHVKWLNQGYRDDDPAQDPYKW 444

Query: 640  QALLDHGIIELVGTEEEED---CCTAWGIK---------------------YLLKDIEDK 675
             +L+  G+IE +  EEEE    C T   ++                       LK +++ 
Sbjct: 445  DSLVKGGVIEYLDAEEEETVMICMTPEDLENSRLQQQGIDPHANDGDFDPAARLKSVQNA 504

Query: 676  KPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTL 735
                +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DT+
Sbjct: 505  H--TWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS-AMGKQAMGIYLTNFLVRMDTM 561

Query: 736  SHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVM 795
            ++ L+YPQ+PL  T   +            L   EL  GQNAIVA+  + GYNQEDS++M
Sbjct: 562  ANILYYPQKPLATTRSME-----------YLKFRELPAGQNAIVAILCYSGYNQEDSVIM 610

Query: 796  NRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPF 855
            N++S++RG+FRS + RSY  +++ K    +    +       ++ K G  D ++DDG   
Sbjct: 611  NQSSIDRGLFRSMYYRSY-MDLEKKSGVQQLEEFEKPTRETTLRMKHGTYDKIEDDGLIA 669

Query: 856  IGANLQSGDIVIGKYADSGADH---------------SIKLKHTERGMVQKVVLSSNDDG 900
             G  +   DI+IGK A    D                S  LK TE G+V +V++++N DG
Sbjct: 670  PGTGVSGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSDG 729

Query: 901  KNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSR 960
            + F  V +R  R P +GDKF+S HGQKG +G    QE+ PFT +GI PDI+INPHA PSR
Sbjct: 730  QKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSR 789

Query: 961  QTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYD 1020
             T G L+E  L K    +G       +  ATPF   +V++++  L + G+   G E +Y 
Sbjct: 790  MTIGHLVECLLSKVATLIGN------EGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYH 843

Query: 1021 GRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADR 1068
            G TG  +++ +++GPT+YQRL HM +DK+  R  GPV  LTRQPV  R
Sbjct: 844  GHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGR 891


>gi|358366889|dbj|GAA83509.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Aspergillus
            kawachii IFO 4308]
          Length = 1233

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 369/1221 (30%), Positives = 565/1221 (46%), Gaps = 189/1221 (15%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN  ++  L+K  +S   + +    D +           ++F  +
Sbjct: 116  AFLKVKGLVKQHIDSYNYLVEVQLKKIVES--SSTIRSDVDHT---------FYIKFTNI 164

Query: 92   TLDKPSFFAGNGGDEHDMF------PRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
             L  P   A    D    F      P+  RL++ TY++   ++V F+           + 
Sbjct: 165  YLGFPRR-ADEPQDARADFTYSTVSPQECRLRDTTYAA--PIQVDFE-----------YV 210

Query: 146  TGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIK 199
             GR++ ++K         + IGR+PVM++S  C +      +      C  D GGYFI+ 
Sbjct: 211  RGRQRVMRK--------GVAIGRMPVMLRSSKCVLANKTPAEMTVLNECPLDPGGYFIVN 262

Query: 200  GAEKVFVAQEQICLKRLWVSNS------MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGG 253
            G EKV + QEQ+   R+ V              +  +E K    IV          +K  
Sbjct: 263  GTEKVILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSKSYIV----------LKKD 312

Query: 254  EKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLI----DFTCEDCSI------------- 296
            +  +    LS +IPI IL  A+G+ +DKE++ L+        ED +I             
Sbjct: 313  KLYVKHNVLSEDIPIVILLKAMGIHTDKEMLLLVAGVDKVYQEDFAINFEEAIKLGIYTQ 372

Query: 297  ---LNILFASIHDADNKCDEFRKG--RNALKYVDKLIKGTTFPPGESTEECMNTYLFPSL 351
               L+ + A I     +   +R+   + A++ +  +I         S  E  N    P  
Sbjct: 373  QQALDWIGARIKINRKQSPSYRRTHVQEAVEAIASVII--------SHIEVKNMNFRP-- 422

Query: 352  HGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLER-----------EL 400
                 KA ++ +M + +L A +     D+RD   NKRLELAG+LL             ++
Sbjct: 423  -----KAVYVAHMARRVLMAKNDASLVDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDI 477

Query: 401  KVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERI 460
            K++I     +  +A   D Y   T       + ++ +T G++RA STG WS    R ER 
Sbjct: 478  KMNIDKVLNKRNRAEAFDAYSVIT-------MHSNHITQGMNRAISTGNWSLKRFRMER- 529

Query: 461  SGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLV 520
            +G+   L R + +  L  + R   Q + T KV   R   PS +G +C   TP+GE CGLV
Sbjct: 530  AGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCPADTPEGEACGLV 589

Query: 521  KNLGVTGLVSTSILE-PIFEQLFNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSL 577
            KNL +   ++T+  E PI   +F  G E +       L G   + + ++G    + +   
Sbjct: 590  KNLALMTHITTNDEEGPIRNLIFMLGAEDIQTVGGKELYGPGCYTISINGTPTALTRRPK 649

Query: 578  SFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IK 630
             F+   RR RR   +   V I  +  Q  V +  D GRI RPL+VVEN GK       ++
Sbjct: 650  YFLDAFRRLRRMGRISEFVSIYINHHQRAVHVATDDGRICRPLIVVEN-GKSRVNAQHLE 708

Query: 631  SLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFL 690
             L      F   L  G++E +   EE D      I    KDI +      TH E++   +
Sbjct: 709  KLRNGTMQFDDFLAQGLVEYLDVNEENDSL----ISIYEKDITETT----THLEIEPFTV 760

Query: 691  LGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTM 750
            LG   G+IP+ +H+ + R  YQ      QAIG   +N  +R+D++ + + YPQ+P+ ++ 
Sbjct: 761  LGAVAGLIPYPHHNQSPRNTYQC-AMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSR 819

Query: 751  ISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHI 810
              +           +    +L  GQNAIVAV  + GY+ ED+LV+N+ S++RG  R +  
Sbjct: 820  TIE-----------LTKYDQLPAGQNAIVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVF 868

Query: 811  RSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGK- 869
            R Y   + +     K R S       +  + I +   L+ DG   +G  + +G++ I K 
Sbjct: 869  RKYVTNLKSYSNGTKDRLSGPTY---ENDAPIRKHALLESDGLAAVGEQVNAGEVYINKS 925

Query: 870  ---------YADSGADHSIKLKHT-------ERGMVQKVVLSSNDDGKNFSVVSLRQVRS 913
                     + +S A   +    T       +   + KV++S  ++      V  RQ R 
Sbjct: 926  TPDQSMSSGFPNSDAGRPVSYMPTPMTYKLPDPAYIDKVMVSVTENENQLVKVLTRQTRR 985

Query: 914  PCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGK 973
            P +GDKFSS HGQKGV+G +  Q + PFT  GI PDI++NPH FPSR T G++LE   GK
Sbjct: 986  PEVGDKFSSRHGQKGVVGIIADQADMPFTDTGINPDIIMNPHGFPSRMTVGKMLELVAGK 1045

Query: 974  GIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFI 1033
                   G+ +G   Y T F    V  +++ L   GFS  G + L  G TGE +   +F 
Sbjct: 1046 A------GVLAGQHGYGTCFGGSPVQEMSQILIDNGFSYGGKDYLTSGITGEALPFYVFT 1099

Query: 1034 GPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL 1093
            GP +YQ+L HM +DK+  R  GP   LTRQP   R R GG++ GEMERDCLIA+G +  L
Sbjct: 1100 GPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLL 1159

Query: 1094 HERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAK 1153
             ERL   SD +++ +C +C  +  +              +C+ C S   +VK  +PY AK
Sbjct: 1160 LERLMISSDRHEIDVCEQCGFMGYL-------------NWCQRCKSSRSVVKMAIPYAAK 1206

Query: 1154 LLCQELFSMGIT--LKFDTEF 1172
            LL QEL SM +T  LK D EF
Sbjct: 1207 LLIQELMSMNVTARLKLDDEF 1227


>gi|238483555|ref|XP_002373016.1| DNA-directed RNA polymerase III, beta subunit, putative [Aspergillus
            flavus NRRL3357]
 gi|220701066|gb|EED57404.1| DNA-directed RNA polymerase III, beta subunit, putative [Aspergillus
            flavus NRRL3357]
          Length = 1218

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 363/1221 (29%), Positives = 573/1221 (46%), Gaps = 189/1221 (15%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN  ++  L+K  +S   +I+    D +           ++F  +
Sbjct: 101  AFLKVKGLVKQHIDSYNYLVEVQLKKIVES--SSIIRSDIDHN---------FYIKFTDI 149

Query: 92   TLDKPSFF-----AGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKT 146
             L  P         G G     + P   RL++ TY++ ++V  ++ +  ++RV       
Sbjct: 150  YLGAPRRADEQQDVGPGFTGSTVSPHECRLRDTTYAAPIQVDFEY-IRGRQRV------- 201

Query: 147  GREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKG 200
                         + T   IGR+PVM++S  C +      +      C  D GGYFI+ G
Sbjct: 202  -------------KKTGCSIGRMPVMLRSSKCVLSDKTPAEMTVLDECPLDPGGYFIVNG 248

Query: 201  AEKVFVAQEQICLKRLWVSNS------MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGE 254
             EKV + QEQ+   R+ V              +  +E K    IV          +K  +
Sbjct: 249  TEKVILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSKSYIV----------LKKDK 298

Query: 255  KVLSVYFLSTEIPIWILFFALGVSSDKEIVNLI----DFTCEDCSI-------------- 296
              +    LS +IPI IL  A+G+ +DKE++ L+        ED +I              
Sbjct: 299  LYVKHNVLSEDIPIVILLKAMGIHTDKEMLLLVAGIDKVYQEDFAINFEEAIKLGIYTQQ 358

Query: 297  --LNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGT 354
              L+ + + I     K + +R+      +V + +        E+    + +++       
Sbjct: 359  QALDWIGSRIKINRGKQNNYRR-----THVQEAV--------EAIASVIISHIEVKDMNF 405

Query: 355  KQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKR 410
            + KA ++ +M + +L A +     D+RD   NKRLELAG+LL    E   K      +  
Sbjct: 406  RPKAVYVAHMARRVLMAKNDPSLVDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDIKMN 465

Query: 411  MAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRA 470
            + K L +    +         + ++ +T G++RA STG WS    R ER +G+   L R 
Sbjct: 466  VDKVLNKRNRAEAFDAWTVMSMHSNHITQGMNRAISTGNWSLKRFRMER-AGVTHVLSRL 524

Query: 471  NPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVS 530
            + +  L  + R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL +   ++
Sbjct: 525  SYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCLADTPEGEACGLVKNLALMTHIT 584

Query: 531  TSILE-PIFEQLFNSGMEKLADDASYSLGGK-------FKVFVDGDWIGVCKDSLSFVSE 582
            T+  E PI   +F  G E ++     +LGGK       + + ++G  + + +   SF++ 
Sbjct: 585  TNDEEGPIRNLIFMLGAEDIS-----TLGGKELYGPGCYTISINGTPMALTRRPKSFLNA 639

Query: 583  LRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGK 635
             RR RR   +   V I  +  Q  V +  D GRI RPL+VVEN GK       +K L   
Sbjct: 640  FRRLRRMGRISEFVSIYINHHQRAVHVATDDGRICRPLIVVEN-GKNRVRSHHLKKLREG 698

Query: 636  NYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSC 695
              +F   L  G++E +   EE D      I    KDI +      TH E++   +LG   
Sbjct: 699  TMSFDDFLAQGLVEYLDVNEENDSL----IAIYEKDITEAT----THLEIEPFTVLGAVA 750

Query: 696  GIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCL 755
            G+IP+ +H+ + R  YQ      QAIG   +N  +R+D++ + + YPQ+P+ ++   +  
Sbjct: 751  GLIPYPHHNQSPRNTYQC-AMGKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIE-- 807

Query: 756  GKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKA 815
                     +    +L  G NA+VAV  + GY+ ED+LV+N+ S++RG  R +  +   A
Sbjct: 808  ---------LTKYDQLPAGHNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFKKSVA 858

Query: 816  EVDN-----KEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKY 870
             + +     K++ +     +D        + I +   L+ DG   +G  + +G++ I K 
Sbjct: 859  NLKSYSNGTKDILMPPEYDND--------APIRKHALLESDGLAAVGEQVNAGEVYINKS 910

Query: 871  ADS--------GADHSIKLKHTERGM---------VQKVVLSSNDDGKNFSVVSLRQVRS 913
                       G+D    +K+T   M         + +V++S+ ++      V  RQ R 
Sbjct: 911  TPDQSLASGFPGSDMGRPVKYTPTPMTYKLHDPAYIDQVLVSTTENENQLIKVLTRQTRR 970

Query: 914  PCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGK 973
            P +GDKFSS HGQKGV+G +  Q + PFT QGI PDI++NPH FPSR T G++LE   GK
Sbjct: 971  PEVGDKFSSRHGQKGVVGIIADQADMPFTDQGINPDIIMNPHGFPSRMTVGKMLELVAGK 1030

Query: 974  GIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFI 1033
                   G+ +G   Y T F    V+ +++ L   GFS  G + L  G TGE +   +F 
Sbjct: 1031 A------GVLAGQHGYGTCFGGSPVEEMSQILIDKGFSYGGKDYLTSGITGEALPFYVFT 1084

Query: 1034 GPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL 1093
            GP +YQ+L HM +DK+  R  GP   LTRQP   R R GG++ GEMERDCLIA+G +  L
Sbjct: 1085 GPIYYQKLKHMVQDKMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLL 1144

Query: 1094 HERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAK 1153
             ERL   SD +++ +C +C  +  +              +C+ C S   +VK  +PY AK
Sbjct: 1145 LERLMISSDRHEIDVCEQCGFMGYL-------------NWCQRCKSSRSVVKMAIPYAAK 1191

Query: 1154 LLCQELFSMGIT--LKFDTEF 1172
            LL QEL SM +T  LK + EF
Sbjct: 1192 LLIQELMSMNVTARLKLEDEF 1212


>gi|67810558|gb|AAY81998.1| RNA polymerase II second largest subunit [Spirogyra sp. UWCC FW670]
          Length = 670

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 274/690 (39%), Positives = 390/690 (56%), Gaps = 58/690 (8%)

Query: 510  STPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGD 568
            +TP+G+  GLVKNL +   ++  S   PI + L    ME L + +   +    K+FV+G 
Sbjct: 1    ATPEGQAVGLVKNLALMTYITVGSSANPILDFLEEWTMENLEEISPALIPTATKIFVNGC 60

Query: 569  WIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENM-- 626
            W+GV +D    +  LR+ RR+  + ++V + RD   +E+R++ D GR  RPL +V+N   
Sbjct: 61   WVGVHRDPEMLIRTLRKLRRQLNVKSEVSMVRDVRLNELRLYTDYGRCSRPLFIVKNQRL 120

Query: 627  ----GKIKSLEGKNYT---FQALLDHGIIELVGTEEEEDCCTAWGIKYLLK---DIEDKK 676
                  I +L+ K  T   +  L+  GIIE V T EEE    A  I  ++    + E   
Sbjct: 121  LIKKEDIDALQQKEITGVGWHQLIAKGIIEYVDTMEEETTMIAMTINDVVSARANPETAY 180

Query: 677  PIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLS 736
               +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+
Sbjct: 181  SDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM-GKQAMGIYVTNYQLRMDTLA 239

Query: 737  HQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMN 796
            + L+YPQ+PL  T   +        H H     EL  G NAIVA+  + GYNQEDS++MN
Sbjct: 240  YILYYPQKPLVTTRAME--------HLHFR---ELPAGINAIVAIACYSGYNQEDSVIMN 288

Query: 797  RASLERGMFRSEHIRSYKAEVDNKEMQVKR---RSSDDMVNFGKIQSKIGRVDSLDDDGF 853
            ++S++RG  RS   RSY+ E   +    K    + + D+ +      + G  D LD DG 
Sbjct: 289  QSSIDRGFHRSIFYRSYRDEEKKQGTLTKEEFEKPNRDITS----GMRHGSYDKLDSDGI 344

Query: 854  PFIGANLQSGDIVIGKYA-----DSGA--------DHSIKLKHTERGMVQKVVLSSNDDG 900
               G  +   D++IGK       DSG         D S  L+H+E GM+ +V+L+ N+DG
Sbjct: 345  APPGTRVAGEDVIIGKTMPLPQDDSGTQAQRFTKRDQSTTLRHSESGMIDQVILTINNDG 404

Query: 901  KNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSR 960
              F  + +R +R P +GDKF+S HGQKG +G   +QE+ PF+ +GI PD+V+NPHA PSR
Sbjct: 405  FRFVKIRVRSIRIPQIGDKFASRHGQKGTIGMTYTQEDMPFSQEGISPDLVVNPHAIPSR 464

Query: 961  QTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYD 1020
             T G L+E  +GK  A +GK      +  ATPF   +VD+I+  LH  G+   G E +Y+
Sbjct: 465  MTIGHLIECLMGKVAALMGK------EGDATPFTDVTVDSISRALHSCGYQMRGFEVMYN 518

Query: 1021 GRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEME 1080
            G TG  +++ IF+GPT+YQRL HM +DK+  R  GPV  LTRQP   R R GG++FGEME
Sbjct: 519  GHTGRKLQAHIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEME 578

Query: 1081 RDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSG 1140
            RDC+IAHGAA  L ERLF  SD+Y++H+C  C  +AN          K     CR C + 
Sbjct: 579  RDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIAN-------ANLKKSFFECRGCKNK 631

Query: 1141 DDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
             DIV+ ++PY  KLL QEL SM I  +  T
Sbjct: 632  TDIVQVHIPYACKLLFQELMSMAIAPRMMT 661


>gi|221059854|ref|XP_002260572.1| DNA-directed RNA polymerase [Plasmodium knowlesi strain H]
 gi|193810646|emb|CAQ42544.1| DNA-directed RNA polymerase, putative [Plasmodium knowlesi strain H]
          Length = 1401

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 376/1248 (30%), Positives = 568/1248 (45%), Gaps = 210/1248 (16%)

Query: 38   GLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPS 97
            GLV   I SYN FIK+ ++   ++    I++   D          +  + F  + + +P 
Sbjct: 234  GLVKQHIESYNYFIKHEIKTIMNATTNKILKSDID---------EHFYVEFLDIFVGRP- 283

Query: 98   FFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVL 157
                    E ++ P+  R +++TYS+ + V V++                    I+K   
Sbjct: 284  -LVEENMIETNLTPQICRQRDLTYSAPIYVDVEY--------------VKGSNIIRK--- 325

Query: 158  SDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQI 211
                 N+ IGR+PVM++SD+C +        ++ G+C +D GGYFI+KG E+V + QEQ+
Sbjct: 326  ----NNVEIGRLPVMLRSDICILNNKSEEELMKLGECPYDPGGYFIVKGTERVLLMQEQL 381

Query: 212  CLKRLWVS-----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEI 266
               R+ V      N      +  +E+K    IV           K  +  L       +I
Sbjct: 382  SKNRIIVEMDIKHNICATITSTTAESKSRCAIV----------YKNNKLYLKHNSFIEDI 431

Query: 267  PIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDK 326
             + I+  A+G  SD+EI  +I       + LN +  S++D     +  +   +AL Y+ K
Sbjct: 432  GVCIILRAMGYESDQEIFQMIG---SHRNYLNGILLSLYDL--YSENIKTNLDALLYIGK 486

Query: 327  LIKGTTFPPG-----------------ESTEECMNTYLFPSL-----HGTKQKARFLGYM 364
             I+      G                 E   + ++  L   +     +  + KAR +  M
Sbjct: 487  KIRPRLLAKGFFSSMKEKQVKNEKDIIEEGLDFLSRVLLSHIQQKNKYDFRNKARCICLM 546

Query: 365  VKCLLQAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLY 420
            ++ +L + + + + D++D + NKRLELAG+L+    E   K      +K++ + L + + 
Sbjct: 547  IRRVLDSANNKNELDDKDYYGNKRLELAGQLISLLFEDLYKRFYFTLKKQIDQTLSKYMQ 606

Query: 421  GDRTVR------PIEYYLDA------SILTNGLSRAFSTGAWSHPFKRTERISGIVANLG 468
             + T +        E Y D        I+T G+  A STG W+    + E+ SG+   L 
Sbjct: 607  SNYTSKLKYSGNVNETYPDVFRSLPKDIITRGMQAAISTGNWNIKRFKMEK-SGVSQVLS 665

Query: 469  RANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGL 528
            R + +  +  + R   Q +   KV   R   PS WG +C   TP+GE+CGLVKNL +   
Sbjct: 666  RLSFIACIGMMTRLNSQFEKGRKVSGPRALQPSQWGVLCPCDTPEGESCGLVKNLALMTH 725

Query: 529  VSTSIL--EPIFEQLFNSGME---KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSEL 583
            V+      E + E L+  G+E    L  +  Y  G  F +F +G  +GV K    F+  +
Sbjct: 726  VTNDNENNEHLIEILYTLGVEDSDSLTGEEMYKEGIFFVIF-NGILLGVHKKPRIFMRRI 784

Query: 584  RRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIK-------SLEGKN 636
            R  RR  ++   V I  + L   + I  D GR+ RPL++VEN GK K       SLE   
Sbjct: 785  RCLRRYGKIGQFVSIYDNFLHKAIYISTDGGRLCRPLIIVEN-GKSKLTQEHILSLENGT 843

Query: 637  YTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCG 696
              F  LL   +IE +   E+ +   A          E    I  +H E+D   +LG+  G
Sbjct: 844  INFFDLLKSSVIEWIDVNEQNNLLIALN--------ESDISINTSHLEIDPLTILGVVAG 895

Query: 697  IIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLG 756
            +IP+ NH+ + R  YQ      QAIG    N  +R DTL + L YPQ+PL ++   +   
Sbjct: 896  LIPYPNHNQSPRNTYQCA-MGKQAIGAIGYNQFVRCDTLLYLLVYPQKPLVKSKTIE--- 951

Query: 757  KPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAE 816
                     +   +L  GQNAIVAV    GY+ ED++VMN++S++RG  R   +R +  E
Sbjct: 952  --------FINFEKLPAGQNAIVAVMSFGGYDIEDAIVMNKSSIDRGFGRCMSLRKHAVE 1003

Query: 817  VDN-------------------KEMQVKRR------SSD---------DMVNFG------ 836
            +                     +E Q KRR      S D         D V  G      
Sbjct: 1004 LKKYFNGSNDLVLPSPLAISKMQERQEKRRQEKLSQSQDKQRQAKEERDHVENGAGTNVD 1063

Query: 837  ---KIQSK-IGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA-DH-------------- 877
               K  +K I +  +LD DG   IG  L+ G + I KY+     DH              
Sbjct: 1064 EQKKFHNKEIKKYHALDMDGVVSIGYLLKEGQVYINKYSPRNVKDHVKDISKIDLNDLKA 1123

Query: 878  -SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ 936
              IK K      + K++ + N +G     + +RQ R P LGDKFSS HGQKGV+G L +Q
Sbjct: 1124 NEIKYKSVYPSYIDKIIFTENAEGLKIYKIIMRQTRLPELGDKFSSRHGQKGVVGLLVNQ 1183

Query: 937  ENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP 996
            E+ PFT  GI PD+++NPH FPSR T G+LLE    K        +  G  +Y + F+  
Sbjct: 1184 EDMPFTESGICPDLIMNPHGFPSRMTVGKLLELVASKS------AVLDGELKYGSIFSGT 1237

Query: 997  SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGP 1056
              + +   L + GF+    E LY G TGE + + IF+GP +YQ+L HM +DK+  R  GP
Sbjct: 1238 PFEEMASILFKYGFNCSSKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIHARARGP 1297

Query: 1057 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVA 1116
               LTRQP   R + GG++ GEMERDCLIA+G +  L ERL   SD   ++IC  C    
Sbjct: 1298 RQLLTRQPTEGRSKEGGLRLGEMERDCLIAYGVSNLLLERLMLSSDVCDVYICEDC---- 1353

Query: 1117 NVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
                     G      YC  C   D      +PY  KLL QEL +M +
Sbjct: 1354 ---------GMMGYDTYCTFCQKCDKNALVKMPYACKLLFQELQTMNV 1392


>gi|55273987|gb|AAV48864.1| RNA polymerase II second largest subunit [Albatrellus higanensis]
          Length = 913

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 300/888 (33%), Positives = 455/888 (51%), Gaps = 107/888 (12%)

Query: 258  SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG 317
            ++ ++  +IPIW++F ALGV SD++I+  I +  +D  +L +L   I D     D     
Sbjct: 51   TIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDR---- 106

Query: 318  RNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSLH----GTKQKARFLGYMVKCL 368
              AL ++    +GTT            +E +   + P +        +KA F GYM+  L
Sbjct: 107  EVALDFIGN--RGTTTGLNRERRLRYAQEILQKEMLPHVSMNEGSESKKAYFFGYMIHRL 164

Query: 369  LQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPI 428
            L A   RR  D+RD F  KRL+LAG LL    ++      K + + LQ+ +   +    +
Sbjct: 165  LLAALERRDLDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFN-L 223

Query: 429  EYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQY 488
               +  + +TNGL  + +TG W    K     +G+   L R     TL  LRR    +  
Sbjct: 224  SLAVKHNTITNGLKYSLATGNWGDQKKSMASKAGVSQVLNRYTYASTLSHLRRCNTPLGR 283

Query: 489  TGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGME 547
             GK+   R  H +HWG +C   TP+G+ CGLVKNL +  ++S  S+  P+ E L   G+E
Sbjct: 284  EGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSVISVGSLSAPVIEFLEEWGLE 343

Query: 548  KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEV 607
             L ++A +S     KVFV+G W+GV +D  + V  +++ RR+ ++  +V + RD  + E+
Sbjct: 344  SLEENA-HSSTPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREKEL 402

Query: 608  RIFMDAGRILRPLLVVENMGKI-------------------------KSLEGK------- 635
            R++ DAGR+ RPL +VEN   +                         K+  G+       
Sbjct: 403  RLYTDAGRVCRPLFIVENQQLVIQKKHIKMLTEAADKSKQDEEEEREKAARGEPPMDPDG 462

Query: 636  ----NYTFQALLDHGIIELVGTEEEED---CCTAWGIKYLLKDIEDKKPIK--------- 679
                 YT+  L+  G+IEL+  EEEE    C T   +     D     P +         
Sbjct: 463  EKKPEYTWDHLVRGGLIELLDAEEEETVMICMTPEDLYNSRTDEAQSDPNEEFDPATRLK 522

Query: 680  -------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRV 732
                   +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+
Sbjct: 523  ARTNAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAM-GKQAMGIYLTNFLVRM 581

Query: 733  DTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDS 792
            DT+++ L+YPQ+PL  T   + L              EL  GQNA+VA+  + GYNQEDS
Sbjct: 582  DTMANILYYPQKPLATTRSMEYLR-----------FRELPAGQNAVVAILCYSGYNQEDS 630

Query: 793  LVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDG 852
            ++MN++S++RG+FRS + RSY  +++ K    +    +       ++ K G  D L+DDG
Sbjct: 631  VIMNQSSIDRGLFRSMYYRSY-MDLEKKSGVQQLEEFEKPTRENTLRMKHGTYDKLEDDG 689

Query: 853  FPFIGANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSN 897
                G N+   DI+IGK A                S  D S  LK TE G++ +V+L++N
Sbjct: 690  LIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTKTHSRRDVSTPLKSTESGIIDQVLLTTN 749

Query: 898  DDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAF 957
             +G+ F  + +R  R P +GDKF+S HGQKG +G    QE+ PFT +GI PD++INPHA 
Sbjct: 750  AEGQKFVKIRVRSTRIPQIGDKFASRHGQKGTIGIAYRQEDMPFTAEGITPDLIINPHAI 809

Query: 958  PSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTER 1017
            PSR T G L+E  L K    LG+      +  ATPF   +V++++  L   G+   G E 
Sbjct: 810  PSRMTIGHLVECLLSKVATLLGQ------EGDATPFTDLTVESVSHFLREKGYQSRGLEI 863

Query: 1018 LYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPV 1065
            +Y G TG  +++ +++GPT+YQRL HM +DK+  R  GPV  LTRQPV
Sbjct: 864  MYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPV 911


>gi|409043140|gb|EKM52623.1| hypothetical protein PHACADRAFT_100019 [Phanerochaete carnosa
            HHB-10118-sp]
          Length = 1141

 Score =  468 bits (1204), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 359/1193 (30%), Positives = 542/1193 (45%), Gaps = 149/1193 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETI--VEPGYDPSKKGEGEW-RYASMRF 88
            +F    GLV   I+S+N F+   ++    +  +    V+P +         W +Y  +  
Sbjct: 37   AFLKVKGLVKQHIDSFNYFVDVDIKSILRANSKVTSDVDPRF---------WLKYTDIHV 87

Query: 89   GQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGR 148
            G      P         +  + P   RL++ TYS+ +   +Q+              T  
Sbjct: 88   GFPDRTDPDAV------DKSVTPHECRLRDTTYSAPILATIQY--------------TRG 127

Query: 149  EQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAE 202
            +  +++        N+ IGR+P+M++S+ C + G          +C  D GGYF++KG E
Sbjct: 128  KNVVRRP-------NVNIGRLPIMLRSNKCVLSGRTEIQLARMSECPLDPGGYFVVKGTE 180

Query: 203  KVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFL 262
            KV + QEQ+   R+ V       V   S        ++      +   K G+  L    +
Sbjct: 181  KVILVQEQLSKNRIIVEVDPVKGVVQASCTSSTHGGLK---SKTYVATKKGKIYLRHNSI 237

Query: 263  STEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALK 322
              ++PI I   ALG  SDKEI+ L   T  +       F+   +   K   F K   AL+
Sbjct: 238  HEDVPIVIALKALGFQSDKEILLL---TAGNNEAYKSAFSPNLEEAAKSGVFTK-HQALE 293

Query: 323  YVDKLIK------GTTFPPGESTEECMNTYLFPSLHGT----KQKARFLGYMVKCLLQAY 372
            Y+   +K      G   P  E   E + T +   +       + KA F+  M + +L A 
Sbjct: 294  YIGSRVKVNRKVIGPRRPAWEEALEVLATIVLAHVPVVNMDFRGKAIFVATMTRRVLMAM 353

Query: 373  SGRRKCDNRDDFRNKRLELAGELL-----------ERELKVHIAHARKRMAKALQRDLYG 421
               +  D+RD   NKRLELAG+LL              LK  I    K+ ++  + D + 
Sbjct: 354  DDEKMVDDRDYVGNKRLELAGQLLALLFEDLFKTFNTNLKSAIDKVLKKPSRTSEFDAFN 413

Query: 422  DRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRR 481
                  +++  D   +T G  RA STG WS    + ER +G+   L R + +  L  + R
Sbjct: 414  T-----MQFMGDH--ITAGFVRAISTGNWSLKRFKMER-AGVTHVLSRLSFISALGMMTR 465

Query: 482  TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-LEPIFEQ 540
               Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T +  EPI   
Sbjct: 466  ISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVDEEPIVRL 525

Query: 541  LFNSGMEKLADDASYSLGG--KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEI 598
             +  G+E ++      + G   + V V+G  IG+ +    FV   R+ RR   L   V +
Sbjct: 526  AYMLGVEDISTATGTEIYGPHTYVVNVNGSIIGLTRYPGRFVHNFRKLRRAGRLSEFVSV 585

Query: 599  KRDELQSEVRIFMDAGRILRPLLVVE------NMGKIKSLEGKNYTFQALLDHGIIELVG 652
              +     V I  D GRI RP+++ +          I  L+    TF   L  G++E + 
Sbjct: 586  YINHHHRTVLIASDGGRICRPMIIADRGRPRVTTEHILLLKEGKMTFDDFLKQGLVEYLD 645

Query: 653  TEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 712
              EE D        Y+     D  P   TH E++   +LG   G+IP+ +H+ + R  YQ
Sbjct: 646  VNEENDS-------YIALYESDIVPTT-THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQ 697

Query: 713  SQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELY 772
                  QAIG    N   R+DTL +   YPQ+P+ +T   + +G              L 
Sbjct: 698  C-AMGKQAIGAIGYNQQSRIDTLLYLSVYPQQPMVKTKTIELIG-----------YDRLP 745

Query: 773  NGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDM 832
             GQNA VAV  + GY+ ED+L+ N+ASL+RG  R + +R     +         R +D  
Sbjct: 746  AGQNATVAVMSYSGYDIEDALIQNKASLDRGYGRVQVLRKNATLIRKYPNGTYDRLADAP 805

Query: 833  VNFG-KIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHS------------- 878
            V+ G +IQ K    D +  DG   +G  +  GD+ I K   + A+ +             
Sbjct: 806  VDEGSQIQKK---YDIIQADGLAGVGERVDPGDVYINKQTPTNANDNTFTGQAATVPYKN 862

Query: 879  --IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ 936
              +  K    G + KV+++  ++ +    V +RQ R P LGDKFSS HGQKGV G + +Q
Sbjct: 863  SPMTYKSPVAGYIDKVMVTDTENDQTLIKVLIRQTRRPELGDKFSSRHGQKGVCGLIVNQ 922

Query: 937  ENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP 996
            E+ PF  QGIVPD ++NPH FPSR T G+++E   GK       G+ +G  +Y T F   
Sbjct: 923  EDMPFNDQGIVPDTIMNPHGFPSRMTVGKMIELLAGKA------GVLAGKLQYGTAFGGS 976

Query: 997  SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQ-RLIHMSEDKVKFRNTG 1055
             V+ ++  L   GFS  G + L  G TGE + + ++ GP +YQ  L HM  DK+  R  G
Sbjct: 977  KVEDMSRILVENGFSYAGKDMLTSGITGEPMEAYVYFGPIYYQVSLSHMVVDKMHARARG 1036

Query: 1056 PVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNV 1115
            P   LTRQP   R R GG++ GEMERDCLI +GA   L ERL   SD ++++ C +C   
Sbjct: 1037 PRATLTRQPTEGRSREGGLRLGEMERDCLIGYGATQLLLERLMISSDKFEVNACEEC--- 1093

Query: 1116 ANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
                      G      +C  C S   + +  +PY AKLL QEL +M +  + 
Sbjct: 1094 ----------GLMGYNGWCTYCKSSKKMAQLTIPYAAKLLFQELMAMNVVPRL 1136


>gi|302772933|ref|XP_002969884.1| hypothetical protein SELMODRAFT_410923 [Selaginella moellendorffii]
 gi|300162395|gb|EFJ29008.1| hypothetical protein SELMODRAFT_410923 [Selaginella moellendorffii]
          Length = 1005

 Score =  467 bits (1202), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 335/985 (34%), Positives = 489/985 (49%), Gaps = 154/985 (15%)

Query: 28  KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWR----- 82
           +A  ++F   GLV+HQ++S+N F   G       FG     P +    KGE         
Sbjct: 4   EACDAWFQARGLVAHQLDSFNRFCGAGAHSLALLFGS----PAHFTDIKGEVRMAAMPPC 59

Query: 83  ------YASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQ 136
                  A++R   + L KP+    +      +FPR ARL+ +TYS+R+   V+ QV   
Sbjct: 60  RDPVPALATIRIRNLVLHKPA----DATTGRPLFPREARLRGITYSARLCADVELQVDA- 114

Query: 137 KRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCDFDHGGYF 196
                       EQ  +  V++     + IG IP+MV S LC     +  DC    GGYF
Sbjct: 115 ---------VAGEQ--RNPVVNRVFPAVHIGDIPIMVNSLLCNGHDADAFDC----GGYF 159

Query: 197 IIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKV 256
           I+KG +KV +AQE +     W            S+N R  L    VD+ + +    G  +
Sbjct: 160 IVKGVDKVVLAQELV-----WPQALRVLCPKTGSDNWRVELEQVKVDLERGD----GVLL 210

Query: 257 LSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRK 316
           LS   L T IP+ I+  ALGVS+D++++ ++    +D  +  ++  SI  A  +  EF  
Sbjct: 211 LSAPGLDT-IPLVIVLAALGVSTDRQLLEVMVHDTQDVELTELVRPSIVHAREQMQEFVN 269

Query: 317 -------GRN----ALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMV 365
                  GR+    A++ V   IK  T   G + E+ ++     S      KA  +GYMV
Sbjct: 270 SSGVHGGGRDVTSVAVELVGSRIKPVTPLAGPAQEKLVSLLCNTSSSRPADKALLMGYMV 329

Query: 366 KCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKR-MAKALQRDLYGDRT 424
           +CL     GR   D+    +NKR++LAG+ + ++++   A  RK  + + L+    G   
Sbjct: 330 RCLCLCVVGRSTADDIHSLKNKRVDLAGDCMFKQMRHLSARFRKTTLKRVLKHVEAGGLD 389

Query: 425 VRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQ 484
                  +D S++TNGL  AFSTG WS               L R               
Sbjct: 390 CLTDNLIVDKSVITNGLRAAFSTGIWS---------------LNR--------------- 419

Query: 485 QVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTS-ILEPIFEQLFN 543
                         + SH+G+IC + TPD     L K + V   VS     + + EQL +
Sbjct: 420 --------------NASHYGRICPVETPDDH---LAKTMAVFATVSAPRSHDNVLEQLSH 462

Query: 544 SGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDEL 603
             M+     +   L G   VFV+G+W+G      + +  +R  RR K +  + E+ R   
Sbjct: 463 CQMQS----SQGPLVGWDNVFVNGEWVGATDKPGTLLQAMRNLRRNKLIHPETELARAPS 518

Query: 604 QSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQA---------LLDHGIIELVGTE 654
           ++E+RIF D GR+LRPLLVV+    + S        +A         +LD G++EL+G +
Sbjct: 519 RAEIRIFTDGGRLLRPLLVVDKQRVLLSTREHRRELRARPAHERFDYMLDTGLVELLGAQ 578

Query: 655 EEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQ 714
           EE +   A   +      E +    FTH E+  + LLG+S   IPF NH+ + RV +Q+Q
Sbjct: 579 EESNAVIAVTRR------EAESSSSFTHVEMHPASLLGVSASAIPFLNHNQSARVTHQAQ 632

Query: 715 KHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNG 774
           KH  QAIGF   +   R+DT   QL+YPQ+PL  T ++            +L RPEL NG
Sbjct: 633 KHGKQAIGFYMCDILSRMDTSVRQLYYPQQPLVCTRLA-----------QLLARPELANG 681

Query: 775 QNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVN 834
            N +VAV  + GYNQEDSL++N++SL+RG+FRS H R ++A +D         SSD  + 
Sbjct: 682 VNCVVAVACYGGYNQEDSLILNQSSLDRGLFRSTHFRVHRATLDYS-------SSD--IR 732

Query: 835 FGKIQSKIGR-----VDSLDDDGFPFIGANLQSGDIVIGKY----ADSGADHSIKLKHTE 885
           F + ++++ R     +D LD DG PFIGA +++ D+VIGK     A    DHS KL+  E
Sbjct: 733 FCRPETEVARSNTDGIDKLDSDGLPFIGAEMKAADVVIGKAGRRPASKLVDHSSKLRKLE 792

Query: 886 RGMVQKVVLSSNDD-GKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQ 944
           +G V +VV S  D+ G+    V LR+ R P +GDKFSSMHGQKGV+G    QE   FT Q
Sbjct: 793 QGWVDQVVCSGGDEEGERHVRVRLREARCPQVGDKFSSMHGQKGVVGMKLRQEELLFTQQ 852

Query: 945 GIVPDIVINPHAFPSRQTPGQLLEA 969
           GIVPD+VINPHAF SRQT  Q+LE+
Sbjct: 853 GIVPDVVINPHAFASRQTLAQMLES 877



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/132 (49%), Positives = 83/132 (62%), Gaps = 13/132 (9%)

Query: 1040 RLIHMSEDKVKFRN-TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLF 1098
            RL H+SEDK+K+R  +GPVHPLT QPV DRKR GG KFGEMERDCLI+HGA+A + ERLF
Sbjct: 879  RLHHLSEDKMKWRGASGPVHPLTHQPVKDRKREGGTKFGEMERDCLISHGASATVKERLF 938

Query: 1099 TLSDSYQMHICRKCKNVA--NVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLC 1156
             +SD   + +C  C  +A  N  Q           P C  C+    I   ++P+  KLL 
Sbjct: 939  FVSDRSLVPVCTNCHRLAILNCKQH----------PRCLFCNPQQRIATLDMPHACKLLS 988

Query: 1157 QELFSMGITLKF 1168
             EL SMG+ ++F
Sbjct: 989  MELRSMGVDMRF 1000


>gi|443693201|gb|ELT94631.1| hypothetical protein CAPTEDRAFT_178602 [Capitella teleta]
          Length = 1134

 Score =  467 bits (1202), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 353/1193 (29%), Positives = 550/1193 (46%), Gaps = 146/1193 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+S+N FI   ++    +  +   +   +             M++  +
Sbjct: 28   AFLKVKGLVKQHIDSFNYFINVEIKNIMKANNKITSDADQN-----------FYMKYLNI 76

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             +  P    G    +  + P   RL++MTYS+ + V +++   +Q+ V +          
Sbjct: 77   YVGMPDVEEGFNITK-PISPHECRLRDMTYSAPITVDIEYTRGSQRIVRN---------- 125

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
                       N+ IGR+P+M++S  C + G       +  +C  D GGYFI++G EKV 
Sbjct: 126  -----------NLPIGRMPIMLRSSNCVLVGKVPAELAKLQECPIDPGGYFIVRGVEKVI 174

Query: 206  VAQEQICLKRLWV-----SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVY 260
            + QEQ+   R+ V      N+M    +   E K    ++          +K  +  +   
Sbjct: 175  LIQEQLSKNRMIVDTDKKGNAMCSVTSSTHERKSKTNVI----------MKHHKYYIQHN 224

Query: 261  FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD--EFRKGR 318
             LS ++PI I   A+G+ SD+EIV ++           ++ A++     +C   +     
Sbjct: 225  TLSEDLPIAIALKAMGIESDQEIVQMVGSE-------EMVLAAMAPCLEECHRAQVYTQV 277

Query: 319  NALKYVDKLIK-------GTTFPPGESTEECMNTYLFPSLHGT----KQKARFLGYMVKC 367
             ALKY+   ++       G      E   E +   +   +  T    K KA +   M++ 
Sbjct: 278  QALKYMGGKVRQRRIWGGGAKKSKAEEARELLQGTIIAHVPVTNWNFKVKASYTALMLRR 337

Query: 368  LLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR- 426
             + A       D+RD   NKRLELAG+LL    +         + +     +   R  + 
Sbjct: 338  CILAQGNTMNVDDRDYVGNKRLELAGQLLSLLFEDLFKKFNSELKRIADMTIPKPRAAQF 397

Query: 427  PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
             I  ++    +TNGL+ A S+G WS    + +R  G+   L R + +  L  + R   Q 
Sbjct: 398  DIVKHMRQDQITNGLTHAISSGNWSIKRFKMDR-QGVTQVLSRLSFISALGHMTRITSQF 456

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSG 545
            + T KV   R   PS WG +C   TP+GE CGLVKNL +   V+T + E  I     N G
Sbjct: 457  EKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHVTTDLPEESIIRLAHNLG 516

Query: 546  MEKL----ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
            +E +     D+ +  L   + V ++G+ +GV ++    V   RR RR   +   V I  +
Sbjct: 517  VEDIHFLSGDELTSPL--IYLVLLNGNILGVIREYRRLVRTFRRMRRAGYVSEFVSISPN 574

Query: 602  ELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHGIIELVGTEE 655
                 V I  D GR+ RP ++VEN         I+ L      F+  L  G++E +   E
Sbjct: 575  HAHRVVHIASDGGRVCRPYIIVENGEPRVKDRHIQELTQGVRCFEDFLQEGLVEYLDVNE 634

Query: 656  EEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQK 715
            E DC  A      L + E  K  + TH E++   +LG+  G+IP+ +H+ + R  YQ   
Sbjct: 635  ENDCFIA------LYESEIHK--ETTHLEIEPFTILGVCAGLIPYPHHNQSPRNTYQC-A 685

Query: 716  HSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQ 775
               QA+G    N   R+D+L + L YPQ P+ +T   D +G             ++  GQ
Sbjct: 686  MGKQAMGTIGYNQRNRIDSLMYLLCYPQAPMVKTKTIDLIG-----------FDKIPAGQ 734

Query: 776  NAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF 835
            NA VAV  + GY+ ED+L++N+ASL+RG  R    R+ K  +     Q   +    M++ 
Sbjct: 735  NATVAVMSYSGYDIEDALILNKASLDRGFGRCLVYRNAKVALKRYANQTFDKVMGPMID- 793

Query: 836  GKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---------DSGA--------DHS 878
             + + +I R D LD DG    G  +++  +++ KY           SG         D  
Sbjct: 794  AETKKQIWRHDILDMDGICSPGEKVENKQLLVNKYMPTVTINPLQSSGGQPQQPEYRDVP 853

Query: 879  IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQEN 938
            +  K      ++KV++SSN++      + LRQ R P +GDKFSS HGQKGV G +  Q +
Sbjct: 854  LGYKGPMPSYIEKVMISSNEEEAFIIKILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQAD 913

Query: 939  FPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSV 998
             PF+  GI PDI++NPH +PSR T G+L+E    K       G+  G   Y T F    V
Sbjct: 914  MPFSNLGICPDIIMNPHGYPSRMTVGKLIELMGSKA------GVLEGKFHYGTAFGGDKV 967

Query: 999  DAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVH 1058
              ++E L + GF+  G + +  G TGE + + IF GP FYQ+L HM  DK+  R  GP  
Sbjct: 968  SDLSEVLVKHGFNYLGKDFVTSGITGEPLSAYIFFGPIFYQKLKHMVIDKMHARAKGPRA 1027

Query: 1059 PLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANV 1118
             LTRQP   R R GG++ GEMERDCLI +GA+  L ERL   SD++++ +C +C      
Sbjct: 1028 VLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCNQC------ 1081

Query: 1119 IQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                   G      +C  C S   +    +PY  KLL QEL SM I  +   +
Sbjct: 1082 -------GLLGYSGWCHYCKSSSHVSSLKMPYACKLLFQELQSMNIVPRLTLQ 1127


>gi|88976158|gb|ABD59039.1| RNA polymerase II second largest subunit, partial [Macrolepiota
            dolichaula]
          Length = 882

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 301/869 (34%), Positives = 452/869 (52%), Gaps = 98/869 (11%)

Query: 258  SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG 317
            ++ ++  +IPIW++F  LGV SD++I+  I +  +D  +L +L   I D     D     
Sbjct: 47   TIPYIKVDIPIWVVFRGLGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDR---- 102

Query: 318  RNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLH----GTKQKARFLGYMVK 366
              AL ++    +GTT   G S E       E +   + P +        +KA F GYM+ 
Sbjct: 103  EVALDFIGN--RGTT--TGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIH 158

Query: 367  CLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR 426
             LL A   RR+ D+RD F  KRL+LAG LL    ++      K + + LQ+ +   +   
Sbjct: 159  RLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKEFN 218

Query: 427  PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
             +   +    +TNGL  + +TG W    K     +G+   L R     TL  LRR    +
Sbjct: 219  -LALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPL 277

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSG 545
               GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  S   P+ E L   G
Sbjct: 278  GREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWG 337

Query: 546  MEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQS 605
            +E L ++A +S     KVFV+G W+GV +D  + V  +++ RR+ ++  +V + RD  + 
Sbjct: 338  LESLEENA-HSTTPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREK 396

Query: 606  EVRIFMDAGRILRPLLVVENM------GKIKSL------EGKNYTFQALLDHGIIELVGT 653
            E+RI+ DAGR+ RPL +VEN         I+ L      EG  Y ++ L+  G+IEL+  
Sbjct: 397  ELRIYTDAGRVCRPLFIVENQQLLLQKKHIRWLNSSFDEEGNEYKWEQLIKGGVIELLDA 456

Query: 654  EEEEDCCTAWGIKYLLKDIEDKK--------------------------PIKFTHCELDM 687
            EEEE       I    +D+E+ +                             +THCE+  
Sbjct: 457  EEEETVM----ISMTPEDLENSRLQAAGVDPHANDGDFDPAARLKAGTHAHTWTHCEIHP 512

Query: 688  SFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLF 747
            S +LG+   IIPF +H+ + R  YQS     QA+G   TN  IR+DT+++ L+YPQ+PL 
Sbjct: 513  SMILGICASIIPFPDHNQSPRNTYQSAM-GKQAMGIFLTNFLIRMDTMANILYYPQKPLA 571

Query: 748  RTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRS 807
             T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS
Sbjct: 572  TTRSME-----------YLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRS 620

Query: 808  EHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVI 867
             + RSY  +++ K    +    +       ++ K G  D L+DDG    G  ++  DI+I
Sbjct: 621  IYYRSY-MDLEKKSGIQQLEEFEKPTRETTLRMKHGTYDKLEDDGLIAPGTGVRGEDIII 679

Query: 868  GKYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVR 912
            GK A                +  D S  LK TE G+V +V++++N +G+ F  V +R  R
Sbjct: 680  GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTR 739

Query: 913  SPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALG 972
             P +GDKF+S HGQKG +G    QE+ PFT +GIVPD+VINPHA PSR T G L+E  L 
Sbjct: 740  IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDLVINPHAIPSRMTIGHLVECLLS 799

Query: 973  KGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIF 1032
            K    +G       +  ATPF   +V++++  L + G+   G E +Y G TG  +++ ++
Sbjct: 800  KVATLIGN------EGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVY 853

Query: 1033 IGPTFYQRLIHMSEDKVKFRNTGPVHPLT 1061
            +GPT+YQRL HM +DK+  R  GPV  LT
Sbjct: 854  LGPTYYQRLKHMVDDKIHSRARGPVQILT 882


>gi|301110510|ref|XP_002904335.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide
            [Phytophthora infestans T30-4]
 gi|262096461|gb|EEY54513.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide
            [Phytophthora infestans T30-4]
          Length = 1166

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 355/1217 (29%), Positives = 570/1217 (46%), Gaps = 174/1217 (14%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
            F    GLV   I+S++ F    ++    +    +V    DP    +   +Y  ++ G  +
Sbjct: 38   FLQLRGLVKQHIDSFDYFTSVDMRNIVRAQANNVVRSDADP----KFFLQYTDIQLGAPS 93

Query: 93   LDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYI 152
            +D+ +F + +      + P   RL++ TY++ + V V+++    K VT++K         
Sbjct: 94   IDEEAFVSAS------VTPHQCRLRDRTYAAPVYVSVRYR-RGNKIVTNNK--------- 137

Query: 153  QKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG------DCDFDHGGYFIIKGAEKVFV 206
                       ++IGRIP+M++S  C + G  +       +C +D GGYFI++G EKV +
Sbjct: 138  -----------VLIGRIPIMLRSSRCVLAGKSEAALAKLKECPYDPGGYFIVRGVEKVVL 186

Query: 207  AQEQICLKRLWVS----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFL 262
              EQ+   R+ +     +++  ++   +  +++R  + L           G   L     
Sbjct: 187  IHEQLSKNRVIIEEDGKHNVCASITSSTHERKSRTNIFL---------NKGRVYLKSNSF 237

Query: 263  STEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALK 322
             ++IPI I+F  +GV SD+EIV+L+    + C  L+  F    D      +    + AL+
Sbjct: 238  GSDIPIVIVFRGMGVESDQEIVSLVGSESDICDALSASFEEASDL-----KVFTQQQALE 292

Query: 323  YVDKLIKGTT--------------FPPGE-----STEECMNTYLFPSL----HGTKQKAR 359
            Y+   +   T               P  +     +    +   +   +       + K+ 
Sbjct: 293  YIGSKMNALTKIGAMGGRHRGGAGRPQNDRNLVDAARSALANLVLNHVPCDNFNFRLKSI 352

Query: 360  FLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQR-- 417
            ++ ++V+ +L     R + D++D + NKRLELAG+LL     +      KR    L+R  
Sbjct: 353  YVAHIVRRILFTDKDRTRLDDKDYYGNKRLELAGQLLS----LLFEDLFKRFNSDLKRQA 408

Query: 418  DLYGDRTVRP----IEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPL 473
            D+   +  R     I   +    +T G   A STG W+    R +R +G+   L R + +
Sbjct: 409  DMVLSKPNRASVFDILKCVRTDTITQGFYHALSTGNWTLKRFRMDR-AGVTHVLSRLSYM 467

Query: 474  QTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLVSTS 532
              L  + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   + S  
Sbjct: 468  SALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLCHVTSDE 527

Query: 533  ILEPIFEQLFNSGME--KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRK 590
               PI    F+ G+    L+     +    + V ++G  IG   +  +FV+ LRR RR  
Sbjct: 528  EPAPIKRLCFDLGVTDVSLSSGEEINHASNYLVMLNGVIIGTHVNPRAFVTRLRRIRRAG 587

Query: 591  ELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK--------IKSLEGKNYTFQAL 642
             +   V +   ++Q  V I  D GR+ RPLL+++ +          +  L        +L
Sbjct: 588  LIGEFVSVMIHDVQRVVYIASDGGRVCRPLLLIDPVTHRTRLTQRHLDELRAGVRDLSSL 647

Query: 643  LDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFAN 702
            +  G +E V   EE +C  A          E +   + TH E+D   +LG+  G+IP+ +
Sbjct: 648  IVEGCVEYVDVNEENNCLVALH--------ESEIGDRTTHLEIDPVTILGVVSGLIPYPH 699

Query: 703  HDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGH 762
            H+ + R  YQ      QAIG    N   R+DTL + + YPQ P+ +T + D         
Sbjct: 700  HNQSPRNTYQC-AMGKQAIGTIAMNQFERIDTLLYTMVYPQMPMVKTRVLD--------- 749

Query: 763  NHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEM 822
              ++    +  GQNAIVAV  + GY+ ED++V+N+ASL+RG  R    + Y+  +     
Sbjct: 750  --LVNFDRVPAGQNAIVAVMSYSGYDIEDAIVLNKASLDRGFGRCMVFKKYQTMIK---- 803

Query: 823  QVKRRSSDDMVNFGKIQS-----------KIGRVDSLDDDGFPFIGANLQSGDIVIGKYA 871
            +    S D +V      S           +  +  SLD DG   +G  +Q+G I+I K  
Sbjct: 804  KYANGSYDRIVGPPDFDSLAAAGGAGMGFRNAKFSSLDADGISRVGGIVQNGAIMINKEQ 863

Query: 872  DSGADHSIKLKH-----------TERG----MVQKVVLSSNDDGKNFSVVSLRQVRSPCL 916
             +  + S+  +            T +G     V KV+L+S++       V +RQ R P +
Sbjct: 864  PTQFNDSVDGRDPLDVTYSPSPTTYKGPIPAYVDKVLLTSSEANHFLVKVLIRQTRRPEI 923

Query: 917  GDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIA 976
            GDKFSS HGQKGV G + +QE+ PF  QGI PD+++NPH FPSR T G+++E   GK   
Sbjct: 924  GDKFSSRHGQKGVCGTIRNQEDMPFNDQGICPDLIMNPHGFPSRMTVGKMIELIAGKA-- 981

Query: 977  ALGKGICSGLKRYATPFATP--SVDAI---TEQLHRAGFSKWGTERLYDGRTGEMVRSLI 1031
                G+ +G + Y T F     S D +   + +L + GF+  G + L  G TGE +   I
Sbjct: 982  ----GVLTGRRAYGTAFGEKYGSADHVLDCSRELVKNGFNYAGKDYLTSGITGEAIECYI 1037

Query: 1032 FIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAA 1091
            F+GP +YQ+L HM  DK+  R  GP   LTRQP   R R GG++ GEMERDCLI +GA+ 
Sbjct: 1038 FMGPIYYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASM 1097

Query: 1092 NLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYG 1151
             L ERL   SD++   +C+ C        R++G        +C+ C S + +V   +PY 
Sbjct: 1098 LLMERLMLSSDAFSADVCQGC--------RMLG-----YEGWCQHCKSEEKVVSIRIPYA 1144

Query: 1152 AKLLCQELFSMGITLKF 1168
             KLL QEL +M I  + 
Sbjct: 1145 CKLLFQELQAMNIVPRL 1161


>gi|307204008|gb|EFN82912.1| DNA-directed RNA polymerase III subunit RPC2 [Harpegnathos saltator]
          Length = 1081

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 362/1142 (31%), Positives = 536/1142 (46%), Gaps = 157/1142 (13%)

Query: 82   RYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTS 141
            RY  +  G+   D+      +  D   ++P   RL+++TY++ + V +++          
Sbjct: 17   RYLDIHIGEPIFDE------SLNDIRKLYPHECRLRDLTYAAPIIVDIEY---------- 60

Query: 142  DKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVE------KGDCDFDHGGY 195
                 G +  I+         NI+IGR+P+M++S  C + G+       K +C  D GGY
Sbjct: 61   ---IRGNQPIIK--------NNIVIGRMPIMLRSANCRLTGLTAHELSTKDECPHDPGGY 109

Query: 196  FIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDI----- 250
            FIIKG EKV + QEQ+   R+ +          + +NK N  IV   + S  E       
Sbjct: 110  FIIKGQEKVILIQEQMVRNRILL----------EKDNKEN--IVAYCNSSTHERKTKTSI 157

Query: 251  --KGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDAD 308
              K G   +       +I + I+F A+G+ +D+ IV LI    E  S L       HD +
Sbjct: 158  IGKSGRYYMKHNIFQDDILVTIVFKAMGIHTDQNIVMLIGTEHEFQSKLEWSLRECHDLN 217

Query: 309  NKCDEFRKGRNALKYVD-KLIKGTTFPPGESTEECMNTYL--FPSLHGT-KQKARFLGYM 364
                       AL Y++ K  +   F   E  +      L   P  + + K K   L +M
Sbjct: 218  -----IFTQNQALMYLNSKRTQPRVFNANEMKDVLATNVLSHVPVKNFSFKLKGIHLAFM 272

Query: 365  VKCLLQAYSGRRKCDNRDDFRNKRLELAGELLER-----------ELKVHIAHARKRMAK 413
            V+ ++ A S ++  D+RD   NKRLE+AG LL             ELK  IA       K
Sbjct: 273  VRKVIMAQSNKKLLDDRDFVGNKRLEVAGSLLSLMFEDLFKRFNWELK-QIADKNIPKIK 331

Query: 414  ALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPL 473
            A Q D         I  ++    +TNGL  A STG W     + ER  G    L R + +
Sbjct: 332  AAQFD---------IVKHMRQDQITNGLLFAISTGNWKIKRFKMER-QGATQVLSRLSYI 381

Query: 474  QTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI 533
              L  + R   Q + T +V   R  H S WG +C   TP+GE+CGLVKNL +   ++T  
Sbjct: 382  SALGMMTRVHSQFEKTRQVSGPRSLHLSQWGMLCPCDTPEGESCGLVKNLALMAHITTDE 441

Query: 534  LEPIFEQLFNS-GMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVSELRRKRRRK 590
             E     L ++  M+++    S  +  K  + V ++G   GV       V  L+  RRR 
Sbjct: 442  PEDHIAWLLSTLDMQEIQSLGSQEINHKDEWLVLLNGVIQGVTSHYKKLVHTLKTLRRRG 501

Query: 591  ELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLD 644
             + + V I   +    V I  D GR+ RP  +VEN         +K  + K   F+  L 
Sbjct: 502  YISSFVSIYMQDNHRCVHISTDGGRLCRPYFIVENGRLVVTAEHMKLFQQKILKFEDFLQ 561

Query: 645  HGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHD 704
             G+IE +   EE D   A          E++   + TH E++   +LG+  G+IP+ +H+
Sbjct: 562  TGMIEYLDVNEENDVLIALD--------ENEIQAETTHMEIETFTILGVCAGLIPYPHHN 613

Query: 705  HARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNH 764
             + R  YQ      QA G    N   R+DT+ + L YPQ P+ RT  S+           
Sbjct: 614  QSPRNTYQCAM-GRQAAGTIGYNQRKRMDTVMYNLVYPQAPIVRTKTSE----------- 661

Query: 765  ILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQV 824
            ++   EL  G+NAIVA+  + GY+ ED+LV+NRASL+RG  R    RS KA +     Q 
Sbjct: 662  MIKYNELPAGENAIVAIMSYGGYDIEDALVVNRASLDRGYGRCLIYRSTKAVLKRYPNQ- 720

Query: 825  KRRSSDDMVNFGKIQSKIGRV----DSLDDDGFPFIGANLQSGDIVIGKYA--------D 872
                + D +    + S   +V    D LD DG    G  ++   +++ K          +
Sbjct: 721  ----TYDRIMGPSLDSNTNKVAWKHDILDADGIAMPGERVEDKKVLVNKSVPSQSIDRVN 776

Query: 873  SGADHSIKLKH---------TERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSM 923
            +G+D S K ++          E   V++ +L+SN D      + LRQ R P +GDK SS 
Sbjct: 777  TGSDASPKTQYRDAEIYYKGLEPAYVEQSLLTSNADDSFLIKLLLRQTRRPEIGDKLSSR 836

Query: 924  HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGIC 983
            HGQKGV+G + + E+ PF  QGIVPDI++NPH FPSR T G+L+E   GK       GI 
Sbjct: 837  HGQKGVIGSIVNPEDLPFNDQGIVPDIIMNPHGFPSRMTVGKLIEILAGK------VGIL 890

Query: 984  SGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIH 1043
            +G    +T F    VD ++EQ+ + G++  G +  Y G TGE + + I+ G  +YQRL H
Sbjct: 891  NGEFHDSTAFGGSKVDDLSEQMQKHGYNYLGKDCFYSGITGEPMEAYIYTGTVYYQRLKH 950

Query: 1044 MSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDS 1103
            M +DK+  R  GP   +TRQP   R + GG++FGEMERDCL+A+GA+  L ERL   SD 
Sbjct: 951  MVQDKIHARAKGPRVVMTRQPTEGRSKDGGLRFGEMERDCLVAYGASMMLIERLMLSSDG 1010

Query: 1104 YQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMG 1163
             ++ +C  C             G      +C+ C S  +I    +PY  KLL  EL SM 
Sbjct: 1011 VKVDVCNSC-------------GLMGYSGWCQSCRSNSNISSVTMPYACKLLLHELQSMN 1057

Query: 1164 IT 1165
            I 
Sbjct: 1058 IV 1059


>gi|120561245|gb|ABM27007.1| RNA polymerase II second largest subunit, partial [Capniomyces
            stellatus]
          Length = 924

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 321/958 (33%), Positives = 476/958 (49%), Gaps = 116/958 (12%)

Query: 201  AEKVFVAQEQICLKRLWVSN----SMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKV 256
             EKV +AQE+I    ++V       + +T   +S  +R       + + K    K G   
Sbjct: 1    GEKVLIAQERIATNTVFVFKKNVPQVHYTAEIRSVAERASKQASPLFLKKLARGKAGGGG 60

Query: 257  L-----------SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIH 305
                        ++ ++ ++IP+ ++F ALG+ + K+I+  I +   D  +L     SI 
Sbjct: 61   GSGGGSSGGIQATIPYIRSDIPVVVVFRALGMVAAKDILEHICYDGNDNELLEEFKGSIE 120

Query: 306  DADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSL----HGT 354
            +     D+      +L ++ K  +GTT   G S E       E +     P +    H  
Sbjct: 121  EGFVIQDK----EVSLDFIGK--RGTTV--GVSKEKRVKYAREILQKEFLPHVGTQAHNE 172

Query: 355  KQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKA 414
             +K  F GYM+  LL     RR+ D+RD +  KR++LAG LL    +       K M + 
Sbjct: 173  TRKTYFFGYMIHRLLLCGLERREQDDRDHYGKKRMDLAGPLLAMLFRNLFRKVTKDMTRY 232

Query: 415  LQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQ 474
            LQ+ +   R    +   + ++ +T GL  + +TG W    K  +  +G+   L R     
Sbjct: 233  LQKCIDSKREFN-LTMAMKSNTITAGLKYSLATGNWGDQKKAMQSRTGVSQVLNRYTFAS 291

Query: 475  TLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSIL 534
            TL  LRR    +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   ++    
Sbjct: 292  TLSHLRRCNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMAHITVGTD 351

Query: 535  E-PIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELP 593
              PI   L    ME L + A  S+    K+FV+G W+G+ K+ +  VS L++ RRR E  
Sbjct: 352  SGPILLFLEEWAMENLEELAGSSINDSTKIFVNGVWVGIHKEPIRLVSTLKQLRRRLEFS 411

Query: 594  TQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYT------FQA 641
             +V I RD  + E+RI  D+GR+ RPL VV N         IK++E +  +      +  
Sbjct: 412  YEVSIVRDVREKELRILTDSGRVCRPLFVVNNSRLNINKDVIKAIEAREVSDVEAVRWHD 471

Query: 642  LLDHGIIELVGTEEEEDCCTAWGIKYLLKD-------------------IEDKKPI---K 679
            LL  GIIE +  EEEE        + L +                    ++ K+ I    
Sbjct: 472  LLSEGIIEYLDAEEEETAMIIMTPQELTESRLYVENGIVPAVELDLASRVKSKRNIGIST 531

Query: 680  FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQL 739
            +THCE+  S +LG+   I+PF +H+ + R  YQS     QA+G   T+  +R+DTLS+ L
Sbjct: 532  WTHCEIHPSMILGICASIVPFPDHNQSPRNTYQSAM-GKQAMGIMLTSYQLRMDTLSNIL 590

Query: 740  FYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRAS 799
            +YPQ+PL  T   +            L   +L  GQNAIVA+  + GYNQEDSL+M++ S
Sbjct: 591  YYPQKPLATTHSME-----------YLKFSDLPAGQNAIVAILCYSGYNQEDSLIMSQTS 639

Query: 800  LERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK------IQSKIGRVDSLDDDGF 853
            ++RG+FRS   RSY+ E D   M+        M  F K      ++ K G  + L++DG 
Sbjct: 640  IDRGLFRSIFFRSYQDEEDKLGMRT-------MGKFEKPTRETTLRLKHGTYEKLEEDGL 692

Query: 854  PFIGANLQSGDIVIGK---------------YADSGADHSIKLKHTERGMVQKVVLSSND 898
               G  +   DI+IGK                  +  D S  L+ TE G+V +V+L++N 
Sbjct: 693  IAPGTRVTGDDIIIGKTTPIPVDSLELGQRTVTHTKLDASKPLRSTETGIVDQVMLTTNG 752

Query: 899  DGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFP 958
            DG  F  V +R  R P +GDKF+S HGQKG +G     E+ PFT QG+VPD++INPHA P
Sbjct: 753  DGFKFVKVRMRSTRIPQIGDKFASRHGQKGTIGMTYRSEDMPFTSQGLVPDLIINPHAIP 812

Query: 959  SRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERL 1018
            SR T G L+E  L K +A L      G    ATPF   +VDAI+ +L   G+   G E +
Sbjct: 813  SRMTIGHLVECLLSK-LATL-----MGTTADATPFTDVTVDAISHELFNLGYQSRGFEVM 866

Query: 1019 YDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKF 1076
            Y+G TG  + + +F GPT+YQRL HM +DK+  R  GP+  LTRQPV  R R GG++F
Sbjct: 867  YNGHTGRKLYTQVFFGPTYYQRLKHMVDDKIHSRARGPLQILTRQPVEGRSRDGGLRF 924


>gi|367035314|ref|XP_003666939.1| hypothetical protein MYCTH_2312111 [Myceliophthora thermophila ATCC
            42464]
 gi|347014212|gb|AEO61694.1| hypothetical protein MYCTH_2312111 [Myceliophthora thermophila ATCC
            42464]
          Length = 1155

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 383/1237 (30%), Positives = 570/1237 (46%), Gaps = 182/1237 (14%)

Query: 8    FTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIV 67
             TDP S  +   + L  F +          GLV   I+SYN F+++ ++    +    I+
Sbjct: 21   LTDPISTKEDKYQLLPAFLKVK--------GLVKQHIDSYNFFVEHEIKDIVRA--NRII 70

Query: 68   EPGYDPSKKGEGEW-RYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMK 126
                  S + +  W  +  +R G  T +  S F        ++ P   RL++MTY++ + 
Sbjct: 71   R-----SDQEKDFWLEFTDIRVGTPTRNDYSDFKA----RDEVTPMECRLRDMTYAAPVV 121

Query: 127  VKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG 186
            V +   VY++ R          ++ ++K+        I + RIPVM+KS  C + G    
Sbjct: 122  VDI---VYSRDR----------KKIVRKD--------IPLCRIPVMLKSAKCCLSGATNA 160

Query: 187  ------DCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKRN 235
                  +C  D GGYFII G EKV + QEQ+   R+ V     +  +  +V   +  +++
Sbjct: 161  QMEIMNECPLDPGGYFIINGTEKVILIQEQLSKNRVIVEADEKTGGVSASVTSSTHERKS 220

Query: 236  RLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLI---DFTCE 292
            +  V L         K    VL+   L   IPI I+  ALG  SD EI+ L+   D   +
Sbjct: 221  KTYVIL---------KKDRIVLNHNVLVEPIPIVIVLKALGGLSDYEIMELVAGGDARYQ 271

Query: 293  DCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIK--------GTTFPPGESTEECMN 344
            D  ++N       D   K   F + + AL+YV   +K            P     EE ++
Sbjct: 272  DDFLINF------DEATKAGVFTQ-QQALEYVGSRVKMGGPKKGRSMAAPRRSPVEEGLD 324

Query: 345  TYLFPSLHGTK-------QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL- 396
                  +   +        KA ++  MV+ +L A    +  D+RD   NKRLELAG+LL 
Sbjct: 325  ALANVVVAHVEIQDLDFYPKAIYIAMMVRRVLMASHDPKLVDDRDFVGNKRLELAGQLLS 384

Query: 397  ---ERELKVHIAHARKRMAKALQRDLYGDRT-----VRPIEYYLDASILTNGLSRAFSTG 448
               E   K+ +   +  M    ++    +RT     V PI        +T GL+RA  +G
Sbjct: 385  LLFEDMFKMFVGSLKGNMEYFFKKP---NRTSAYDPVGPISS--QGQYITQGLNRAIQSG 439

Query: 449  AWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICF 508
             W+       R +G+   L R + +  L  + R   Q + T KV   R   PS WG +C 
Sbjct: 440  NWNVKRFNMNR-AGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCP 498

Query: 509  LSTPDGENCGLVKNLGV-TGLVSTSILEPIFEQLFN--SGME--KLADDASYSLGGKFKV 563
              TP+GE CGLVKNL + T + + +  EP+   +F+   G+E  ++         G + +
Sbjct: 499  SDTPEGEACGLVKNLALMTHITTNAEEEPVKNWIFSLIPGVEPIRMFTGTEMHRPGSYII 558

Query: 564  FVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVV 623
             ++G    + +    F +  +  RRR  +   V I  +E  S + I  D GRI RP ++V
Sbjct: 559  HLNGTPFALTRHPKQFAARFKTMRRRGHISPFVGIHINEHFSAIHIATDEGRICRPYIIV 618

Query: 624  ENMGK-------IKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKK 676
            ++ GK       ++ L+    TF   L + +IE +   EE D   A          E+  
Sbjct: 619  KD-GKPRLKKEHLRLLQLGKATFDDFLKNSVIEYLDVNEENDALIAIR--------EEDV 669

Query: 677  PIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLS 736
                TH E++   +LG   G+IPF +H+ + R  YQ      QAIG    N   R+DTL 
Sbjct: 670  NQSTTHMEIEPFTILGAVAGLIPFPHHNQSPRNTYQC-AMGKQAIGAIAYNQFNRIDTLL 728

Query: 737  HQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMN 796
            + L YPQRP+  T     +      H   LP      GQNA V V  + GY+ ED+LV+N
Sbjct: 729  YTLVYPQRPMVITKTIQLI------HYDKLP-----AGQNATVVVMSYSGYDIEDALVLN 777

Query: 797  RASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQS-----KIGRVDSLDDD 851
            +AS +RG  R +  R Y AE+       K R        G IQ       I +   LD D
Sbjct: 778  KASCDRGFGRCQVFRKYTAELQQYPNGRKDR-------LGGIQKDEEGRTIAKHACLDKD 830

Query: 852  GFPFIGANLQSGDIVI-----------GKYADSGADH----SIKLKHTERGMVQKVVLSS 896
            G   +G  + SG+ +I           G  +D G+D      I  +  +   + KV++S+
Sbjct: 831  GLAVVGYRVHSGETMIMKETPIDQTSTGIGSDRGSDEFRPAPINYRIPDPAYIDKVMVSN 890

Query: 897  NDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHA 956
             +       V  RQ R P LGDKFSS HGQKGV+G +  QE+ PF+  G+VPDI++NPH 
Sbjct: 891  TEKNTAIIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVDQEDMPFSDSGLVPDIIMNPHG 950

Query: 957  FPSRQTPGQLLEAALGKGIAALGKGICSGLKRYA--TPFATPSVDAITEQLHRAGFSKWG 1014
            FPSR T G+L E   GK        + +G + Y     F +  V+ +   L   GFS  G
Sbjct: 951  FPSRMTVGKLFECLTGKA------SVVAGRRDYGFGDAFRSHPVEEMGRVLIEHGFSWEG 1004

Query: 1015 TERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGI 1074
             +    G TGE   + +F GP +YQRL HM +DK+  R+ GP   LTRQP   R R GG+
Sbjct: 1005 KDYFTSGITGEPHEAYLFNGPIYYQRLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGL 1064

Query: 1075 KFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYC 1134
            + GEMERDCLIA+GA+  L ERL   SD  Q+ IC +C            G    +G +C
Sbjct: 1065 RLGEMERDCLIAYGASQLLLERLMISSDGTQVDICERC------------GLLGYKG-FC 1111

Query: 1135 RICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
            + C S   + +  +PY AKLL QEL SM + ++   E
Sbjct: 1112 QTCGSTSQVTQMTMPYAAKLLVQELISMNVGVRMQLE 1148


>gi|268563827|ref|XP_002647022.1| Hypothetical protein CBG24045 [Caenorhabditis briggsae]
          Length = 1078

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 347/1125 (30%), Positives = 533/1125 (47%), Gaps = 141/1125 (12%)

Query: 115  RLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVK 174
            RL++MTYS+ + V ++   YT+          G ++  +K+        ++IGR+P+M++
Sbjct: 19   RLRDMTYSAPISVDIE---YTR----------GHQRVYKKD--------LVIGRMPIMLR 57

Query: 175  SDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV----SNSMGW 224
            S  C ++ + +       +C  D GGYF++KG+EKV + QEQ+   R+ V    S  +  
Sbjct: 58   SSKCILRDLAEEELARVQECPHDPGGYFVVKGSEKVILIQEQLSKNRIMVGRNSSKELQC 117

Query: 225  TVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIV 284
             V   +  ++++  V          +K G+  +    L+ ++P+ I+F A+GV SD +IV
Sbjct: 118  EVLSSTSERKSKTYV---------TVKKGKYSVRHNQLTDDVPVSIIFKAMGVESDFDIV 168

Query: 285  NLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPP-GESTEECM 343
            + I    +  S     FA   +       + + + AL YV   +K   F P G      +
Sbjct: 169  STIGHEEKYVSA----FAQTLEECINAGVYTQ-QQALAYVTSKVKARKFTPFGSLPGTSV 223

Query: 344  NTYLFPSLHGT-------------------KQKARFLGYMVKCLLQAYSGRRKCDNRDDF 384
            +    P  H                     K KA +LG M + L+Q   G  + D+RD +
Sbjct: 224  SVLTAPKEHEAVDFLSNSMITHIACPDGNFKMKAIYLGQMTRRLIQTEMGENELDDRDFY 283

Query: 385  RNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNG 440
             NKRLELAG LL    E   K   +  ++    AL + +        I  ++   ++TN 
Sbjct: 284  GNKRLELAGSLLALLFEDVFKRFNSELKRIADNALMKTMAAPLD---IVKHMRQDMITNT 340

Query: 441  LSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHP 500
            +  A STG W     R ER+ G+   L R + +  L  + R     + T KV   R   P
Sbjct: 341  IVNAMSTGNWIIKRFRMERL-GVTQVLSRLSYISALGMMTRINSTFEKTRKVSGPRSLQP 399

Query: 501  SHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGG 559
            S WG +C   TP+GE CGLVKNL +   ++T S  +P+   L NSG+E L  +  +S   
Sbjct: 400  SQWGMLCPSDTPEGEACGLVKNLALISHITTDSDEKPVLRLLLNSGVEDL-HNVHFSHVN 458

Query: 560  KFK---VFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRI 616
            K +   +F++G  IG   D    V  +R  RR   L   V + R      V I  D GR+
Sbjct: 459  KPENTLIFLNGVLIGTAVDPERVVKAVRDLRRSGLLSEFVSVSRSMTNRSVFISSDGGRL 518

Query: 617  LRPLLVVENMGK-------IKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLL 669
             RP ++V + GK       ++ L+     F+  +D GI+E +   E  D         L+
Sbjct: 519  CRPYIIVRH-GKPMLTETHVQELKEGKRIFEDFVDDGIVEYLDVNEMNDA--------LI 569

Query: 670  KDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPS 729
               E++   + TH E++   LLG+  G+IP+ +H+ + R  YQ      QA+G    N  
Sbjct: 570  AVYENEIGAETTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-AMGKQAMGTIAYNQQ 628

Query: 730  IRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQ 789
             R+D++ + L YPQRPL ++   +           +    +L  G N I+AV  + GY+ 
Sbjct: 629  KRIDSIMYLLCYPQRPLVKSKTIE-----------LTNFEKLPAGANGIIAVMSYSGYDI 677

Query: 790  EDSLVMNRASLERGMFRS---EHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVD 846
            ED+LV+N+ASL+RG  R    +H++    +  N+        + D V        I +  
Sbjct: 678  EDALVLNKASLDRGYGRCLVYKHVKGTAKKYPNQTYDRLLGPAVDSVTL----KPIFKHK 733

Query: 847  SLDDDGFPFIGANLQSGDIVIGKYAD----------------------SGADHSIKLKHT 884
            +LD +G  F GA +     +I KY                        +  D SI  K  
Sbjct: 734  NLDQEGIVFTGARILPKQTIINKYMPVVSAESGSAASANTIGIAGRDVAYKDVSITYKTP 793

Query: 885  ERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQ 944
                 ++V+L+ N+D  +   V LRQ R P LGDKFSS HGQKGV G +  QE+ PF   
Sbjct: 794  TPSYAERVLLTYNEDEAHLFKVLLRQTRRPELGDKFSSRHGQKGVCGLIAQQEDMPFNDL 853

Query: 945  GIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQ 1004
            G+VPD+++NPH +PSR T G+L+E   GK       G+ +G   Y T F    V  + E+
Sbjct: 854  GMVPDMIMNPHGYPSRMTVGKLMELLSGKA------GVMNGTYHYGTAFGGDQVKDVCEE 907

Query: 1005 LHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQP 1064
            L   G++  G + L  G TG+ + + I+ GP +YQ+L HM  DK+  R  GP   LTRQP
Sbjct: 908  LAARGYNYMGKDMLTSGITGQPLSAYIYFGPIYYQKLKHMVLDKMHARARGPRAALTRQP 967

Query: 1065 VADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVG 1124
               R R GG++ GEMERDCLIA+GA+  L ERL   SD +++        +   +    G
Sbjct: 968  TEGRSREGGLRLGEMERDCLIAYGASMLLIERLMVSSDEFKVLFRSFVPLIPIEVDVCTG 1027

Query: 1125 GGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFD 1169
             G      +C+ C S   +    +PY  KLL QEL SM I  + D
Sbjct: 1028 CGVIGSKGWCQKCRSSKSMANIKIPYACKLLFQELQSMNIVPRLD 1072


>gi|116199389|ref|XP_001225506.1| hypothetical protein CHGG_07850 [Chaetomium globosum CBS 148.51]
 gi|88179129|gb|EAQ86597.1| hypothetical protein CHGG_07850 [Chaetomium globosum CBS 148.51]
          Length = 1155

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 382/1238 (30%), Positives = 569/1238 (45%), Gaps = 184/1238 (14%)

Query: 8    FTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIV 67
             TDP S  +   + L  F +          GLV   I+SYN F++  ++         IV
Sbjct: 21   LTDPISTREDKYQLLPAFLKVK--------GLVKQHIDSYNFFVEQEIKD--------IV 64

Query: 68   EPGYDPSKKGEGEW--RYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRM 125
            +         E ++   +  +R G  T +  + F        ++ P   RL++MTY++ +
Sbjct: 65   KANRSIRSDQEKDFWLEFTDIRVGTPTRNDYTDFKA----RDEVTPMECRLRDMTYAAPV 120

Query: 126  KVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK 185
             V + +                R++ ++K+        I + RIPVM+KS  C + G   
Sbjct: 121  VVDITYS-------------RDRKRIVRKD--------IPLCRIPVMLKSAKCCLSGANN 159

Query: 186  G------DCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKR 234
                   +C  D GGYFII G EKV + QEQ+   R+ V     +  +  +V   +  ++
Sbjct: 160  AQMEIMNECPLDPGGYFIINGTEKVILIQEQLSKNRVIVEADEKTGGVSASVTSSTHERK 219

Query: 235  NRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLI---DFTC 291
            ++  V L         K    VL+   L   IPI I+  ALG  SD EI+ ++   D   
Sbjct: 220  SKTYVIL---------KKDRIVLNHNVLVEPIPIVIVLKALGGLSDYEIMEVVAGGDARY 270

Query: 292  EDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIK--------GTTFPPGESTEECM 343
            +D  ++N   A+      K   F + + AL+YV   +K            P     EE +
Sbjct: 271  QDDFLINFEEAA------KAGVFTQ-QQALEYVGSRVKMGGPKKGRSMAAPRRSPVEEGL 323

Query: 344  NTYLFPSL-HGTKQ------KARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL 396
            +      + H T +      K+ ++  MV+ +L A    R  D+RD   NKRLELAG+LL
Sbjct: 324  DALANIIIAHVTIKDLDFYPKSIYISMMVRRVLMAAHNPRLVDDRDFVGNKRLELAGQLL 383

Query: 397  ----ERELKVHIAHARKRMAKALQRDLYGDRT-----VRPIEYYLDASILTNGLSRAFST 447
                E   K+ +   +  M    ++    +RT     V PI        +T GL+RA  +
Sbjct: 384  SLLFEDMFKMFVGGLKGNMEYFFKKP---NRTSAYDPVGPISS--QGQYITQGLNRAIQS 438

Query: 448  GAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKIC 507
            G W+       R +G+   L R + +  L  + R   Q + T KV   R   PS WG +C
Sbjct: 439  GNWNVKRFNMNR-AGVTHVLSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLC 497

Query: 508  FLSTPDGENCGLVKNLGV-TGLVSTSILEPIFEQLFN--SGME--KLADDASYSLGGKFK 562
               TP+GE CGLVKNL + T + + +  EP+   +F    G+E  ++   +     G + 
Sbjct: 498  PSDTPEGEACGLVKNLALMTHITTNAEEEPVKNWIFGLIPGVEPIRMYTGSEMHKRGSYM 557

Query: 563  VFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLV 622
            + ++G    + K    F S  +  RRR  +   + I  +E  S + I  D GRI RP ++
Sbjct: 558  IHLNGTPFAITKHPKEFASRFKTTRRRGHISPFIGIHINEHFSAIHIATDEGRICRPYII 617

Query: 623  VENMGK-------IKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDK 675
            V++ GK       ++ L+    TF   L   +IE +   EE D   A          ED 
Sbjct: 618  VKD-GKPKLKKEHLRLLQLGKATFDDFLKRSVIEYLDVNEENDALIAIR--------EDD 668

Query: 676  KPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTL 735
                 TH E++   +LG   G+IPF +H+ + R  YQ      QAIG    N   R+DTL
Sbjct: 669  VNHSTTHMEIEPFTILGAVAGLIPFPHHNQSPRNTYQC-AMGKQAIGAIAYNQFNRIDTL 727

Query: 736  SHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVM 795
             + L YPQRP+  T     +      H   LP      GQNA V V  + GY+ ED+LV+
Sbjct: 728  LYTLVYPQRPMVITKTIQLI------HYDKLP-----AGQNATVVVMSYSGYDIEDALVL 776

Query: 796  NRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQ-----SKIGRVDSLDD 850
            N+AS +RG  R +  R Y AE+       K R        G IQ     + I +   LD 
Sbjct: 777  NKASCDRGFGRCQVFRKYTAELQQYPNGRKDR-------LGGIQKDEAGNTIAKHACLDK 829

Query: 851  DGFPFIGANLQSGDIVI-----------GKYADSGADH----SIKLKHTERGMVQKVVLS 895
            DG   +G  + SG+ +I           G  +D G+D     +   +  +   + KV++S
Sbjct: 830  DGLAVVGYRVHSGETMIMKETPIDQTSTGIGSDRGSDDFRPAATNYRIADPAYIDKVMIS 889

Query: 896  SNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPH 955
            + +   +   V  RQ R P LGDKFSS HGQKGV+G +  QE+ PF+  G+VPDI++NPH
Sbjct: 890  NTEKNTSIVKVQTRQTRRPELGDKFSSRHGQKGVVGIIADQEDMPFSDSGLVPDIIMNPH 949

Query: 956  AFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYA--TPFATPSVDAITEQLHRAGFSKW 1013
             FPSR T G+L E   GK        + +G + Y     F +  V+ + + L   GFS  
Sbjct: 950  GFPSRMTVGKLFECLTGKA------SVVAGERDYGFGDAFRSHPVEEMGKVLVEHGFSWE 1003

Query: 1014 GTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGG 1073
            G +    G TGE   + +F GP +YQRL HM +DK+  R+ GP   LTRQP   R R GG
Sbjct: 1004 GKDYFTSGITGEPHEAYLFNGPIYYQRLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGG 1063

Query: 1074 IKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPY 1133
            ++ GEMERDCLIA+GA+  L ERL   SD  Q+ IC  C            G    +G +
Sbjct: 1064 LRLGEMERDCLIAYGASQLLLERLMISSDGTQVDICELC------------GLLGYKG-F 1110

Query: 1134 CRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
            C+ C S   + +  +PY AKLL QEL SM + ++   E
Sbjct: 1111 CQTCGSTSQVTQMTMPYAAKLLVQELISMNVGVRMQLE 1148


>gi|300709367|ref|XP_002996849.1| hypothetical protein NCER_100041 [Nosema ceranae BRL01]
 gi|239606175|gb|EEQ83178.1| hypothetical protein NCER_100041 [Nosema ceranae BRL01]
          Length = 1091

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 369/1185 (31%), Positives = 549/1185 (46%), Gaps = 155/1185 (13%)

Query: 33   FFNEYGLVSHQINSYNEFIKN---GLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFG 89
            FF E GL    I S+N FI +    + KA D     I    Y          +Y  +R  
Sbjct: 13   FFFEKGLARQHIESFNYFINHEIASIVKANDIVDSDIDHTFY---------LKYTDVRIS 63

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
              +L++          +H ++P   RL+++TY+S + + +++                 +
Sbjct: 64   VPSLEENMI-------KHTLYPMECRLRDLTYASNLYIDIEY--------------VRNK 102

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK----------------GDCDFDHG 193
            Q I+K+       ++ IGRIP+M++SD C +K                     +C +D G
Sbjct: 103  QIIRKK-------DVFIGRIPIMLQSDKCLLKSKNNEQKLSEESLNANLFFSQECPYDIG 155

Query: 194  GYFIIKGAEKVFVAQEQICLKRLWVSNS-MGWTVAYKSENKRNRLIVRLVDMSKFEDIKG 252
            GYFIIKG EKV + QEQ+   R+ + +   G+  +  S     +    ++        K 
Sbjct: 156  GYFIIKGIEKVILIQEQLSKNRIIIEDGPKGFFSSMTSSTHEQKSKTSVI-------YKN 208

Query: 253  GEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD 312
                L     S +IP+  +  A  + SDKEIV  I     D  +L+  F  I+       
Sbjct: 209  DCYYLVNSSFSEDIPVVAIIKACNMISDKEIVECIGKEFADQIVLS--FEEIYK-----H 261

Query: 313  EFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTK-------QKARFLGYMV 365
            +    + A  Y+   IK    P     EE  N  +   L   K        K   +  MV
Sbjct: 262  KIHTSKEAALYLAGFIKMK--PDANKLEEVRNVIVEKILPNVKFDGVDLRNKGIMICLMV 319

Query: 366  KCLLQAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYG 421
            + L+         +++D   NKR ELAG+LL    E   K      ++ + K L + L  
Sbjct: 320  RRLIFTQKNIITEEDKDFIGNKRFELAGQLLSILFEDSFKKFNWELKRSIDKILTKRLRA 379

Query: 422  DRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRR 481
                    + L  +I+T  + RA S+G W+    R +R SG+   L R + +  +  + +
Sbjct: 380  QEFDALTFFNLQTNIITTSMQRAISSGNWNLRRFRMDR-SGVTHVLIRHSYISAVGMMTK 438

Query: 482  TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQ 540
                 + T KV   R  H S WG  C   TP+GE+CGLVKNL +   V+T S L+ I   
Sbjct: 439  VNSHFEKTRKVSGPRALHTSSWGMFCPADTPEGESCGLVKNLSLLAEVTTDSDLDTIIYI 498

Query: 541  LFNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEI 598
            L + G+ +     ++ +     + VF++GD  GV ++    V   R  RR+  +   V I
Sbjct: 499  LSSLGVIQTGVLYTHEMVSDEMYLVFLNGDIFGVTQNCFGLVKNFRNYRRKGVINKYVSI 558

Query: 599  KRDELQSEVRIFMDAGRILRPLLVV-----ENMGK----IKSLEGKNYTFQALLDHGIIE 649
              DE    V I  D GR+ RPL+++     +N+ K    I  LE K  +F  L++ G IE
Sbjct: 559  YIDENLKSVNIAADNGRLCRPLIIITDEVRQNLKKGLFVISDLEMKYKSFDDLVEDGRIE 618

Query: 650  LVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRV 709
             +   EE D   A  I+    DI DK     TH E+    +LG   G+IPF NH+ + R 
Sbjct: 619  YLDANEENDALIALKIE----DISDKT----THLEIADFAILGYVAGLIPFPNHNQSPRN 670

Query: 710  LYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRP 769
             YQ      QAIG+   N   R D +S QL   Q+PL  T I +           I    
Sbjct: 671  TYQCA-MGKQAIGYIALNSKKRFDGISLQLCNTQKPLTTTQILN-----------ITDYN 718

Query: 770  ELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSS 829
            E+  GQNA+VAV  + GY+ ED+L++N+ SL+RG  R+E  +++          V ++ S
Sbjct: 719  EIPAGQNAMVAVMSYSGYDIEDALIINKDSLDRGFARTEVYKTH--------CYVLKKYS 770

Query: 830  DDM--VNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA--DSGADHSIKLKHTE 885
            D+   V    I++ I     LD DG    G  L  G + I K +  ++G   +  +    
Sbjct: 771  DNRSDVILPDIKNPI-----LDKDGIGKPGELLLEGTVYINKNSPCENGYKFTGGVHKGN 825

Query: 886  RGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQG 945
               + +V+++ ++D +    + LRQ R P +GDKFSS HGQKGV+G +  Q N PFT  G
Sbjct: 826  PAFIDRVLITKSED-QTLIKICLRQTRVPEIGDKFSSRHGQKGVVGLIVPQINMPFTDSG 884

Query: 946  IVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQL 1005
            +VPDI++NPH FPSR T G+++E   GK       GI  G    AT F    VD + + L
Sbjct: 885  LVPDIIMNPHGFPSRMTVGKIIELLTGKA------GIIEGKISDATIFKKNEVDLVCDIL 938

Query: 1006 HRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPV 1065
               GF+  G +  Y G +GE + + IF GP FYQRL HM  DK+  R  GP   LTRQP 
Sbjct: 939  SNNGFNFGGKDCFYSGISGEPIYAYIFYGPVFYQRLKHMVADKIHMRARGPRAILTRQPT 998

Query: 1066 ADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGG 1125
              R R GG++ GEMERDCLI +GA++ + ERL   SD ++   C+ C             
Sbjct: 999  EGRSRDGGLRLGEMERDCLIGYGASSLIVERLMESSDLFETFCCKNC------------- 1045

Query: 1126 GRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
            G  V    C +C+  + +    +PY  KLL QEL SM I  K + 
Sbjct: 1046 GILVPKNGCNVCNDTNPL-PIRLPYACKLLFQELMSMNILPKLNV 1089


>gi|440297940|gb|ELP90581.1| DNA-directed RNA polymerase III subunit RPC2, putative [Entamoeba
            invadens IP1]
          Length = 1140

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 355/1188 (29%), Positives = 568/1188 (47%), Gaps = 156/1188 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+S+N FI   +++        IV      +   + ++    +++  V
Sbjct: 47   AFVKSRGLVRQHIDSFNYFIDEEIRQ--------IVRANDKVTCDADSKF---YLKYLDV 95

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             + +P         +  + P   RL++++Y++ ++  ++F        T DK K  R+  
Sbjct: 96   WVHQPC--VEENYKKEPITPMECRLRDLSYTAPIQASIEF--------TRDK-KVYRK-- 142

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWM------KGVEKGDCDFDHGGYFIIKGAEKVF 205
                        + IG +P+M++S  C +      + ++ G+C  D GGYF++KG E+V 
Sbjct: 143  -----------TVTIGYMPIMLQSKHCVLYNNTFDQFMKHGECPMDPGGYFVVKGVERVI 191

Query: 206  VAQEQICLKRLWVSNS----MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYF 261
            ++QEQ+   R+ +  S    +  +V   +   ++R +V L         K G+  L    
Sbjct: 192  LSQEQMSKNRILIETSSQGFLSASVTSATHEVKSRTVVYL---------KRGKLYLKHNS 242

Query: 262  LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNAL 321
            L+ ++P+ I+  A+G+ SD E +  +       S  + +  SI +   K       R AL
Sbjct: 243  LTEDVPVMIIIKAMGMESDMEFLQFVG-----NSYTSKMINSIEECKTK--NVLNQREAL 295

Query: 322  KYVDKLIKGTT--------FPPGESTEECMNTYLFPSL----HGTKQKARFLGYMVKCLL 369
            +YV   +K  T         P  +   + +   + P +    +  K K  ++  MV  +L
Sbjct: 296  RYVGNHLKIYTGQKGYISKRPKVDEARDVLANLILPHIEVLRYNFKTKIIYIALMVSWIL 355

Query: 370  QAYSGRRKCDNRDDFRNKRLELAGELLE-------RELKVHIAH-ARKRMAKALQRDLYG 421
            +A     + D++D + NKR+ELAG+++        ++    +   A K ++K  + + + 
Sbjct: 356  KA-DETGELDDKDYYGNKRMELAGQMMSLLFEDLFKQFNTELQTIATKELSKKTRSESFD 414

Query: 422  DRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRR 481
                  I  ++    +T GL  A STG W       +R +G+   L R + +  L  + R
Sbjct: 415  ------ILKHISPHRITTGLIHALSTGNWVLKRFNMDR-AGVTQVLSRLSYISALGMMTR 467

Query: 482  TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQ 540
                 + T KV   R    S WG +C   TP+GE+CGLVKN  +   V+T S  + I   
Sbjct: 468  LNSHFEKTRKVSGPRSLQGSQWGMVCPSDTPEGESCGLVKNFSLLTEVTTDSDDQAIMTM 527

Query: 541  LFNSGME--KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEI 598
            LFN G+E   L      +    + VF++G  +G+ ++ + F+ + R  RR   L  +V +
Sbjct: 528  LFNLGVEDANLISGDELNSENSYLVFLNGQLLGIHQNPIHFLRQCRVLRRHGRLGKKVSL 587

Query: 599  KRDELQSEVRIFMDAGRILRPLLVVENM-GKIKSLEGKNY-----TFQALLDHGIIELVG 652
              +E Q  + I  D GR+ RPL+VVEN   KI   E ++      T +  +  G+IE + 
Sbjct: 588  HLNETQRSINISSDGGRVCRPLIVVENAKSKIGPKEIRDIVEGFKTIEDCIKDGMIEYLD 647

Query: 653  TEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 712
              EE +   A          E++     TH E+D   +LG+  G+IP+ +H+ + R  YQ
Sbjct: 648  VNEENNSYIAI--------YENQINEHTTHLEIDPLSILGVVAGLIPYPHHNQSPRNTYQ 699

Query: 713  SQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELY 772
                  QAIG    N   R+DTL + L+YPQ P+ RT   D           ++   ++ 
Sbjct: 700  CA-MGKQAIGTIGYNQFKRIDTLLYLLYYPQVPMVRTKTID-----------MINFDKVP 747

Query: 773  NGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDM 832
             G+NA+VAV  + GY+ ED+ ++N+AS++RG  R    R  KA+V  K  + +   SD +
Sbjct: 748  AGENAMVAVMSYSGYDIEDASILNKASIDRGYQRCFVYR--KADVVIK--KYRNGMSDRV 803

Query: 833  VNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIK------------ 880
            V     +  + +   LD DG    G  L  G I + K A +     I             
Sbjct: 804  VCPTDEERAMKKYKVLDFDGVCSPGTKLMPGMIYLNKQAPNNTTRPITTDVPTDEDFRRE 863

Query: 881  ---LKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQE 937
                K +    V KV+++S+D+      + LR  R P LGDKFSS HGQKGV G +  QE
Sbjct: 864  ALTYKGSVPSYVDKVLITSSDEEPLKIKIGLRTSRRPELGDKFSSRHGQKGVTGLIVKQE 923

Query: 938  NFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPS 997
            + PFT  GI PD+++NPH FPSR T G++LE   GK       G+  G  +Y T F    
Sbjct: 924  DMPFTGDGICPDVIMNPHGFPSRMTVGKMLELVSGKA------GLMDGTFKYGTAFGGDK 977

Query: 998  VDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPV 1057
            +D +++ L  +G+S  G E LY G TG+ +R+ IFIGP +YQ+L HM  DK+  R  GP 
Sbjct: 978  LDDMSKILIESGYSYDGKEVLYSGITGKTLRAYIFIGPVYYQKLKHMVLDKMHARARGPK 1037

Query: 1058 HPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVAN 1117
              LTRQP   R R GG++ GEMERDCLI +GA+  L ERL   SD++++ +CRKC     
Sbjct: 1038 SSLTRQPTEGRSRDGGLRLGEMERDCLIGYGASNLLLERLMYSSDAFKVTVCRKC----- 1092

Query: 1118 VIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
                    G      YC+ C S  +     +PY  KLL QE+ SM + 
Sbjct: 1093 --------GLMGYCGYCKYCQSSLNCSTITMPYACKLLFQEMQSMNVV 1132


>gi|6606103|gb|AAF19064.1|AF107792_1 DNA-dependent RNA polymerase II RPB140, partial [Microascus
            trigonosporus]
          Length = 937

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 322/972 (33%), Positives = 482/972 (49%), Gaps = 131/972 (13%)

Query: 201  AEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSE-NKRNRLIVRLVDMSKFEDIKGGE 254
            +EKV +AQE+     + V      +   +T   +S   K +RLI +L      +  +G  
Sbjct: 1    SEKVIIAQERSAANIVQVFKKAQPSPYSYTAEIRSALEKGSRLISQLALRLYSKGGRGAS 60

Query: 255  KVLSVY-----FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA-- 307
               ++      ++  E PI ++F A GV SD++I+N I +   D  +L +L   I ++  
Sbjct: 61   SSGAIVHATLPYVREETPIALIFRAYGVVSDEDILNHICYDRNDSQMLEMLKPCIEESFV 120

Query: 308  --------DNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTK---- 355
                    D+     ++G  AL   DK I+        + +E +     P +   +    
Sbjct: 121  VQDREVALDHIGKRGQQGGFALTR-DKRIR--------TAKEILQKETLPHISQAEGSET 171

Query: 356  QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKAL 415
            +KA FLGYMV  LLQ   GRR  D+RD F  KRL+LAG LL +  +  +      +   +
Sbjct: 172  RKAFFLGYMVHKLLQCALGRRDVDDRDHFGKKRLDLAGPLLSKLFRNIMRRMNTELTSYM 231

Query: 416  QRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQT 475
            +  +  +R  + I   +  + LTNG+  + +TG W    K     +G+   L R     T
Sbjct: 232  KMCIQNNRNFQ-ISQGIRITTLTNGMKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFAST 290

Query: 476  LVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SIL 534
            L  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   VS  +  
Sbjct: 291  LSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCFVSVGTPT 350

Query: 535  EPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPT 594
            +PI E + +  ME + +          KVFV+G W+GV ++    + E+ + RR    P 
Sbjct: 351  DPIEEFMIDREMEIVEEYEPLRFPNATKVFVNGAWVGVHQEPQRLMEEMIKARRVNSFPA 410

Query: 595  QVEIKRDELQSEVRIFMDAGRILRPLLVV-------------------ENMGKIKS---- 631
            +V + RD    E ++F DAGR++RP+ VV                   E + ++      
Sbjct: 411  EVSLVRDIRDREFKVFSDAGRVMRPVFVVNRENNEYEGVQKGTLVLSKEQVAQLTEERDL 470

Query: 632  -LEGKNYTFQALLDHGIIELVGTEEEED---CCTAWGIKYL------------------- 668
              E +   ++ L+  G +E +  EEEE    C T   ++                     
Sbjct: 471  PTEQRKLKWEDLVRSGAVEYLDAEEEETAMICMTPEDLELFRQTKVEGHQVPPPNINDEP 530

Query: 669  ---LKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPT 725
               LK   +     +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+GF  
Sbjct: 531  NRRLKTDLNPTTYTYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS-AMGKQAMGFFL 589

Query: 726  TNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHL 785
            TN   R+DT+++ L+YPQ+PL  TM  +          H+  R EL  GQNAIVA+  + 
Sbjct: 590  TNYMRRMDTMANILYYPQKPLATTMAME----------HLKFR-ELPAGQNAIVAIACYS 638

Query: 786  GYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK------IQ 839
            GYNQEDS++MN++S++RG+FRS   RSY    D +    KR   + +  F K      ++
Sbjct: 639  GYNQEDSVIMNQSSIDRGLFRSLFFRSY---TDCE----KRVGINLLEQFEKPFRSETLR 691

Query: 840  SKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---------------DSGADHSIKLKHT 884
             K G  D LD+DG    G  +   DI+IGK +                +  D S  L+ T
Sbjct: 692  LKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTSPLSPESQELGQRTTQHTQRDASTPLRST 751

Query: 885  ERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQ 944
            E G+V  VV ++N DG  +  V +R  + P +GDKF+S HGQKG +G    QE+ PFT +
Sbjct: 752  ESGIVDSVVFTTNADGMKYVKVRVRTTKVPQIGDKFASRHGQKGTIGVTYRQEDMPFTRE 811

Query: 945  GIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQ 1004
            GI PDI+INPHA PSR T   L+E  L K +A L      GL+  ATPF   +VD+++  
Sbjct: 812  GITPDIIINPHAIPSRMTIAHLIECLLSK-VATL-----KGLEGDATPFTDVTVDSVSAL 865

Query: 1005 LHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQP 1064
            L   G+   G E +Y+G TG+ +R+ +F GPT+YQRL HM +DK+  R  GPV  +TRQP
Sbjct: 866  LRAEGYHSRGFEIMYNGHTGKKLRAQVFFGPTYYQRLRHMVDDKIHARARGPVQIMTRQP 925

Query: 1065 VADRKRFGGIKF 1076
            V  R R GG++F
Sbjct: 926  VEGRARDGGLRF 937


>gi|341038522|gb|EGS23514.1| DNA-directed RNA polymerase-like protein [Chaetomium thermophilum
            var. thermophilum DSM 1495]
          Length = 1157

 Score =  464 bits (1195), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 381/1236 (30%), Positives = 575/1236 (46%), Gaps = 180/1236 (14%)

Query: 8    FTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIV 67
             TDP S  +   + L  F +          GLV   I+SYN F+++ ++         IV
Sbjct: 23   LTDPISTKEDKYQLLPAFLKVK--------GLVKQHIDSYNFFVEHEIKD--------IV 66

Query: 68   EPGYDPSKKGEGEW--RYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRM 125
                      E ++   +  +R    T +  S F        ++ P   RL++MTY++ +
Sbjct: 67   RANRSIRSDQEKDFWLEFTDIRVLTPTRNDYSDFKA----RDEVTPMECRLRDMTYAAPV 122

Query: 126  KVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK 185
             V +   VY++ R          ++ ++K+        I + RIPVM+KS  C +     
Sbjct: 123  VVDI---VYSRDR----------KRIVRKD--------IPLCRIPVMLKSSKCVLSKATN 161

Query: 186  G------DCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKR 234
                   +C  D GGYFII G EKV + QEQ+   R+ V     +  +  +V   +  ++
Sbjct: 162  AQMEIMNECPLDPGGYFIINGTEKVILIQEQLSKNRVIVEADEKTGGVQASVTSSTHERK 221

Query: 235  NRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLI---DFTC 291
            ++  V L         K    VL+   L   IPI I+  ALG  SD +I+ L+   D   
Sbjct: 222  SKTYVIL---------KKDRIVLNHNVLVEPIPIVIVLKALGGLSDYQILELVAGGDALY 272

Query: 292  EDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIK--------GTTFPPGESTEECM 343
            +D  ++N       D   +   F + + AL+Y+   +K            P     EE +
Sbjct: 273  QDDFLVNF------DEATRAGVFTQ-QQALEYIGLRVKMGGSKKGRSPNAPRRSPVEEGL 325

Query: 344  N--TYLFPSLHGTKQ------KARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGEL 395
            +  T L  + H T +      KA ++  MV+ +L A    +  D+RD   NKR ELAG+L
Sbjct: 326  DALTNLIIA-HITIEDLDFYPKAIYIAMMVRRVLMAAHNPKLIDDRDFVGNKRFELAGQL 384

Query: 396  L----ERELKVHIAHARKRMAKALQRDLYGDRT-----VRPIEYYLDASILTNGLSRAFS 446
            L    E + K+ IA  +  M    ++    +RT     V PI        +T GL+RA  
Sbjct: 385  LSLLFEDQFKMFIASLKGNMEYFFKKP---NRTSAYDPVGPISS--QGQYITQGLNRAIQ 439

Query: 447  TGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKI 506
            +G W+       R +G+   L R + +  L  + R   Q + T KV   R  HPS WG +
Sbjct: 440  SGNWTVRRFNMNR-AGVTHVLSRLSYISALGMMTRISSQFEKTRKVSGPRALHPSQWGML 498

Query: 507  CFLSTPDGENCGLVKNLGV-TGLVSTSILEPIFEQLFN--SGME--KLADDASYSLGGKF 561
            C   TP+GE CGLVKNL + T + + +  EP+ + +F+   G+E  ++   +     G +
Sbjct: 499  CTSDTPEGEACGLVKNLALMTHITTNADEEPVKDCIFDLVPGVEPIRVFTGSEMHRPGSY 558

Query: 562  KVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLL 621
             + ++G    + +    F +  R  RRR  +   V I  +E  S + I  D GRI RP +
Sbjct: 559  IIHLNGTPFALTRHPKQFAARFRTLRRRGHISPFVSIHTNEHFSAIHIATDEGRICRPYI 618

Query: 622  VVENMGK-------IKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIED 674
            +V++ GK       ++ L+    +F   L  G++E +   EE D   A          ED
Sbjct: 619  IVKD-GKSRLKPEHLRLLQLGKASFDDFLRLGVVEYLDVNEENDALIAMN--------ED 669

Query: 675  KKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDT 734
            +     TH E++   +LG   G+IPF +H+ + R  YQ      QAIG    N   R+DT
Sbjct: 670  EITRATTHMEIEPFTILGAVAGLIPFPHHNQSPRNTYQC-AMGKQAIGAIAYNQFNRIDT 728

Query: 735  LSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLV 794
            L + L YPQRP+  T     +      H   LP      GQNA V V  + GY+ ED+LV
Sbjct: 729  LLYTLVYPQRPMVITKTIQLI------HYDKLP-----AGQNATVVVMSYSGYDIEDALV 777

Query: 795  MNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDS----LDD 850
            +N+AS +RG  R +  R Y AE+       K R        G  + + GR  +    LD 
Sbjct: 778  LNKASCDRGFGRCQVFRKYTAELQQYANGRKDRLG------GPQKDEEGRTIAKHACLDR 831

Query: 851  DGFPFIGANLQSGDIVI-----------GKYADSGADH----SIKLKHTERGMVQKVVLS 895
            DG   +G  ++SG+ +I           G   D G+D      +  +  +   + KV++S
Sbjct: 832  DGLAIVGYQIRSGETMIMKETPVDVTSTGIGGDRGSDAYVPAPVNYRINDPAYIDKVMVS 891

Query: 896  SNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPH 955
            + +       V  RQ R P LGDKFSS HGQKGV+G + +QE+ PF+  GIVPDI++NPH
Sbjct: 892  NTEKNTAIIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVNQEDMPFSDSGIVPDIIMNPH 951

Query: 956  AFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGT 1015
             FPSR T G+L E   GK     G+        +   F +  V+ +   L   GFS  G 
Sbjct: 952  GFPSRMTVGKLFECLTGKAAVVAGRPDYG----FGDAFRSHPVEEMGRVLIEHGFSWEGK 1007

Query: 1016 ERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIK 1075
            +    G TG    + +F GP +YQRL HM +DK+  R+ GP   LTRQP   R R GG++
Sbjct: 1008 DYFTSGITGNPHEAYLFNGPIYYQRLKHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLR 1067

Query: 1076 FGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCR 1135
             GEMERDCLIA+GA+  L ERL   SD+ Q+ +C  C            G    +G +C+
Sbjct: 1068 LGEMERDCLIAYGASQLLLERLMISSDATQVDVCEAC------------GLFGYKG-FCQ 1114

Query: 1136 ICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
             C S  ++ +  +PY AKLL QEL SM + ++   E
Sbjct: 1115 TCQSTANVTQMTMPYAAKLLVQELISMNVGVRMQLE 1150


>gi|170291136|ref|YP_001737952.1| DNA-directed RNA polymerase subunit B [Candidatus Korarchaeum
            cryptofilum OPF8]
 gi|170175216|gb|ACB08269.1| DNA-directed RNA polymerase subunit B [Candidatus Korarchaeum
            cryptofilum OPF8]
          Length = 1121

 Score =  464 bits (1194), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 353/1191 (29%), Positives = 563/1191 (47%), Gaps = 139/1191 (11%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            ++F E  L   QI S+N F++ G+Q+  D+F E  +   Y              +   +V
Sbjct: 16   AYFRERNLADVQIESFNRFLERGIQEVVDAFKEIELVENY-------------KLILSRV 62

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             + +P     +G     M P   RL+N  Y +   ++++ +VY                 
Sbjct: 63   YVGRPEIDEYDGSSLPAM-PNEIRLRNADYIA--PIELEIKVYAGG-------------- 105

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
                 +  +T  + IG +P+MVKS  C++ G      + KG+   D GGYFII G+E+V 
Sbjct: 106  -----MELKTERVRIGHLPIMVKSKGCYLYGLDEKRLISKGEDPRDPGGYFIINGSERVL 160

Query: 206  VAQEQICLKRLWVSNSMGWTVAY----KSENKRNRLIVRLVDMSKFED--IKGGEKVLSV 259
            V ++ I   ++ V  ++     Y    +  + R  L  RL       D  IK     L  
Sbjct: 161  VMRDDIAPNKVIVEQTVAENKPYSHVAQIVSARAGLRTRLYLEYYMRDGTIKASTGALR- 219

Query: 260  YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDE----FR 315
                  IP+ +L  ALG+  D++IV+ I  +  D  I +    S+ D   + +E      
Sbjct: 220  -----GIPVAMLLKALGLERDEDIVDAI--SSVDDEIRSEFLYSLDDVQRRAEEEGAQII 272

Query: 316  KGRNALKYVDKLIKGTTFPPGES---TEECMNTYLFPSLHGTKQ----KARFLGYMVKCL 368
                AL Y+ + +     P  +     +E +     P +  +++    KA FL  M++ L
Sbjct: 273  TREEALDYIGRRLV-QAVPRADRIRYAKEYLRNNFLPHIGVSEEDNIVKAYFLAKMIEKL 331

Query: 369  LQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYG---DRTV 425
            L+   G+ + D++D F NKRL L+G L++   +       +++ +     L     D  +
Sbjct: 332  LKVVRGKLEPDDKDHFSNKRLRLSGTLMQEVFRDSFYQLVRKLKEKADEQLSSGVYDLDI 391

Query: 426  RPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQ 485
            R I       ++T  + RA +TGAW           G+  NL R N + TL  LRR    
Sbjct: 392  RRI--IQSQKLVTQRIIRAVATGAWPGGD------LGVSQNLERTNYIATLHHLRRVNSP 443

Query: 486  VQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-LEPIFEQLFNS 544
            +     + + R  H +  G++C L TP+G N GLV++L +   V+     EPI E + + 
Sbjct: 444  LPAGLPLHEVRQTHGTSIGRLCPLETPEGTNVGLVRSLAIFCDVTFGTDPEPIIELVLDW 503

Query: 545  GMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQ 604
            G +   +     +G    V+V+G  +         VS LR KR   EL  +V    +  +
Sbjct: 504  GAKPAKEAKPREVGSLTPVYVNGRLVAFTDKPEELVSFLREKR--AELNPEVNFIYNREE 561

Query: 605  SEVRIFMDAGRILRPLLVV----ENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCC 660
              V I  DAGR+ RPL+ V    E M  +  ++    +F  L+  G++EL+  +EEE   
Sbjct: 562  GAVFINADAGRMRRPLIPVSKLKEAMELLPKVDSGELSFTDLVKMGVVELLDADEEEYAV 621

Query: 661  TAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQA 720
             A  I+    +I DK     TH +     + G++   IP+A H++  R +  S     Q 
Sbjct: 622  VAQSIE----EITDKH----THFDFAPYAMFGVAASQIPYAEHNNIPRDIIGSN-MVRQG 672

Query: 721  IGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVA 780
            +G    N  +R D+ +  +FYPQRP+  T      G    G+N+   RP   +GQN +VA
Sbjct: 673  LGEYLANWRLRFDSRAFLMFYPQRPIVETR-----GAEITGYNY---RP---SGQNLVVA 721

Query: 781  VNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQS 840
            +    GYN +D+LVM++ +++RG  R+   R+Y+ E   +   ++    ++ V   K+  
Sbjct: 722  LLPMDGYNMDDALVMSKGAIDRGAARAVFFRTYETEA-RRHAIIEGDKFENPVALKKVSG 780

Query: 841  KIGR--VDSLDDDGFPFIGANLQSGDIVIGK------------------YADSGADHSIK 880
            K        L +DG       ++ GD++IGK                  Y     D SI 
Sbjct: 781  KKEEQYYQKLGEDGIVDPETYVEGGDVLIGKTSPPRFSPELTVGSGYPQYTFERRDTSIS 840

Query: 881  LKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFP 940
            ++  ERG+V  V+L++   G+    V++R+ R P LGDKF++ HGQKGVLG +   E+ P
Sbjct: 841  MRAWERGVVTDVLLATKTGGEKLVRVNVRETRPPELGDKFATRHGQKGVLGMIYRHEDMP 900

Query: 941  FTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDA 1000
            FT QGI+PDIV++PH  PSR T GQL E   GK + AL      G     TPF +  V+ 
Sbjct: 901  FTAQGIIPDIVLDPHTIPSRMTIGQLYEIIAGK-VGALEGRFVDG-----TPFMSEPVED 954

Query: 1001 ITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPL 1060
            + E L + GF   G E +YDGRTG M+++ +FIG ++YQRL HM  DK+  R  G +  L
Sbjct: 955  LMEALVKLGFEYSGEEIMYDGRTGRMIKAPVFIGISYYQRLKHMVRDKIHARARGQMQLL 1014

Query: 1061 TRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQ 1120
            TRQPV  R R GG++ GEME + LI+HGAA+ + +R    SD   +++C++C  +A   Q
Sbjct: 1015 TRQPVEGRARGGGLRLGEMEGEVLISHGAASVIRDRYIDQSDKTIIYVCKECGTIAFFNQ 1074

Query: 1121 RVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                   K    +C  C S  ++      Y +KL  +EL S  + ++   E
Sbjct: 1075 -------KTNEFFCPRCQSSVEVKPLITSYASKLFIEELMSGHVDVRLSVE 1118


>gi|325182727|emb|CCA17182.1| PREDICTED: polymerase (RNA) III (DNA directed) polypeptide B isoform
            2 putative [Albugo laibachii Nc14]
          Length = 1177

 Score =  464 bits (1194), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 362/1219 (29%), Positives = 572/1219 (46%), Gaps = 173/1219 (14%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
            F    GLV   I+S++ F    L+K   +    +V    DP    +   +Y  ++ G  +
Sbjct: 44   FLQLRGLVKQHIDSFDYFTATELKKIVHAKANNVVRSDADP----KFFLQYTDIQIGNPS 99

Query: 93   LDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYI 152
            +++ +F +        + P   RL++ TY++ + V V+++    K VT++K         
Sbjct: 100  IEEDAFVSST------VTPHQCRLRDRTYAAPVYVSVKYR-RGPKIVTNNK--------- 143

Query: 153  QKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFV 206
                       ++IGRIP+M++S  C + G          +C +D GGYFI+KG EKV +
Sbjct: 144  -----------VLIGRIPIMLRSANCVLTGKNHTQLAALKECPYDPGGYFIVKGVEKVVL 192

Query: 207  AQEQICLKRLWVS----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFL 262
              EQ+   R+ +      ++  ++   +  +++R  + L         KGG   L     
Sbjct: 193  IHEQLSKNRVILELDPKQNICASITSSTHERKSRTNIFL---------KGGRIYLKSNSF 243

Query: 263  STEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALK 322
             ++IPI  +   +G+  D+EI++LI     + +I++ L AS         +      AL+
Sbjct: 244  GSDIPIIAILRGMGMEHDQEIIDLIG---SEPNIMDALLASFEQVSEL--KLFTQLQALE 298

Query: 323  YVDKLIK------------GTTFPP--GESTEECMNTYLFP----SLHGTKQKARFLGYM 364
            Y+   +             G + P    E+    +   +       +   + K  ++ ++
Sbjct: 299  YIGSKMTSQSRGKANSRNGGASQPTNIAETARAALANLVLNHVPCEIDQFRLKCVYIAHI 358

Query: 365  VKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQR--DLYGD 422
            V+ ++     R + D++D + NKRLELAG+LL     +      KR    L+R  D+   
Sbjct: 359  VRRIIFTDRDRTRLDDKDYYGNKRLELAGQLLS----LLFEDLFKRFNSDLKRQADMILS 414

Query: 423  RTVRPIEYYLDASI----LTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVD 478
            +  R   + +   I    +T G   A +TG W+    R +R +G+   L R + +  L  
Sbjct: 415  KPNRASMFDIVKCIRTDTITQGFIHALATGNWTLKRFRMDR-AGVTHVLSRLSYMSALGM 473

Query: 479  LRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLVSTSILEPI 537
            + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   + S    +PI
Sbjct: 474  MTRISSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLCHVTSDEESDPI 533

Query: 538  FEQLFNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQ 595
                F+ G+  +   +  +L  +  + + ++G  IG   D   FV++LRR RR   +   
Sbjct: 534  RRLCFDLGVTDVCLCSGEALNHRSNYLIMLNGIIIGTHGDPRMFVTKLRRIRRAGLIGEF 593

Query: 596  VEIKRDELQSEVRIFMDAGRILRPLLVVE--------NMGKIKSLEGKNYTFQALLDHGI 647
            V +   ++Q  V I  D GR+ RPLL+++        +  +++ L+    T  +L+  G 
Sbjct: 594  VSVMIHDVQRVVYIASDGGRVCRPLLLIDPKTHRPKLSSRQMRELQAHVRTLHSLIVEGC 653

Query: 648  IELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHAR 707
            +E V   EE +C  A          ED   ++ TH E+D   +LG+   +IP+ +H+ + 
Sbjct: 654  VEYVDVNEENNCLIALH--------EDDITVRTTHLEIDPVTILGVVSALIPYPHHNQSP 705

Query: 708  RVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILP 767
            R  YQ      QAIG    N   R+DTL + L YP  P+ ++ + D +       +H+  
Sbjct: 706  RNTYQCAM-GKQAIGTIAMNQFERIDTLLYTLVYPHMPMVKSRVLDLVN-----FDHVPA 759

Query: 768  RPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRR 827
                  GQNAIVAV  + GY+ ED++V+N+ASL+RG  R    R  +A V         R
Sbjct: 760  ------GQNAIVAVMSYSGYDIEDAIVLNKASLDRGFGRCTVFRKLQAMVKKYPNGTFDR 813

Query: 828  -------SSDDMVNFGKIQSKIG----RVDSLDDDGFPFIGANLQSGDIVIGKYADSGAD 876
                    S      G   + +G    R  SLD DG   +G  +  G I+I K   S A 
Sbjct: 814  IVGPPDFESVLSTATGGTAAALGFRNARYASLDADGIARVGGIVHHGAILINKEQPSNA- 872

Query: 877  HSIK--------------------LKHTERGMVQKVVLSSNDDGKNFSVVS--LRQVRSP 914
            HS+                      K     +V KV+++S++  +   +V   LRQ R P
Sbjct: 873  HSMGDTSGSNDPLASISYGPSPTCYKGAVPSIVDKVLITSSETYQTSLLVKVLLRQTRRP 932

Query: 915  CLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKG 974
             +GDKFSS HGQKGV G + SQE+ PF  QGI PD+++NPH FPSR T G+++E   GK 
Sbjct: 933  EIGDKFSSRHGQKGVCGTICSQEDMPFNDQGICPDLIMNPHGFPSRMTVGKMIELVAGKA 992

Query: 975  IAALGKGICSGLKRYATPFATP--SVDAITE---QLHRAGFSKWGTERLYDGRTGEMVRS 1029
                  G+  G + Y T F     + D + E    L +AGF+  G + L  G TGE +  
Sbjct: 993  ------GVLHGRRAYGTAFGEKYGTADRVLECSRDLVKAGFNYAGKDYLTSGITGEPLLC 1046

Query: 1030 LIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA 1089
             IF+GP +YQ+L HM  DK+  R  GP   LTRQP   R R GG++ GEMERDCLI +GA
Sbjct: 1047 YIFMGPIYYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGA 1106

Query: 1090 AANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVP 1149
            +  L ERL   SD ++  +C+ C        R++G      G +C  C+S D +    +P
Sbjct: 1107 SMLLMERLMISSDGFKADVCQGC--------RMLG----YEG-WCPSCNSPDKVASIRIP 1153

Query: 1150 YGAKLLCQELFSMGITLKF 1168
            Y  KLL QEL  M I  + 
Sbjct: 1154 YACKLLFQELQGMNIVPRL 1172


>gi|167042832|gb|ABZ07549.1| putative RNA polymerase Rpb2, domain 6 [uncultured marine
            microorganism HF4000_ANIW137J11]
          Length = 1231

 Score =  464 bits (1194), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 353/1163 (30%), Positives = 561/1163 (48%), Gaps = 167/1163 (14%)

Query: 39   LVSHQINSYNEFIKNGLQKAFDSFGETIVEP---GYDPSKKGEGEWRYASM----RFGQV 91
            LV+HQ+ S+N+F+ +   +A  ++ + +V     G D S +G        +    + G+V
Sbjct: 102  LVNHQLGSFNDFLPHAGNRA--AWMQRVVNNITVGSDESMRGSVRLELGDLEVVVKLGEV 159

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             + +P     NG       P  ARL+N+TY++   V + F V  ++              
Sbjct: 160  RMGQPMVVEANGSQSMST-PMMARLRNLTYAA--PVFLGFSVIEEEMEIE---------- 206

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMK------------------------------ 181
                     ++   IG +PVMVKS LC +                               
Sbjct: 207  ---------SSEEEIGMMPVMVKSALCNLHRESKYLRSKPEYEARLGPDESFSDEAYAAI 257

Query: 182  -GVEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVR 240
              +E+ D + D GGYFI+ G E+V V  E +   R+ V         Y+ + +  ++  +
Sbjct: 258  LQMEQEDPE-DPGGYFIVNGTERVLVCLEDLAPNRVMVERE----ARYQRQTEYAKVFSQ 312

Query: 241  ---LVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSIL 297
                  ++  E  K G   +S+   S  +P+ +L  ALG+ S  +I+  I     D +  
Sbjct: 313  REGFRALTMVEKKKDGILHVSIPVASGGVPLVVLMMALGMESADDIMGAI---TSDEATR 369

Query: 298  NILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEE-------CMNTYLFP- 349
            N++ A+I +  ++ ++      AL+Y+++      F  G+S E         ++  L P 
Sbjct: 370  NLVLANI-EGIHRDEQVYTTEEALEYLER-----RFAAGQSKEYRRKRINYIIDNTLLPH 423

Query: 350  ---SLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAH 406
               SL    +KA FLG M + +L+  +G R+ D++D + NKRL+LAG L+E   +  +  
Sbjct: 424  LSTSLEVRYKKALFLGRMAREVLELATGTRQPDDKDHYANKRLKLAGNLMEELFRAGLQA 483

Query: 407  ARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVAN 466
                M   ++R  Y  R  + +++ +   +LTN +  A +TG W          +G+   
Sbjct: 484  LLNDMKYQMERS-YSKRKEKRVKHAIRRDVLTNKIMHAMATGNW------IGGRAGVSQL 536

Query: 467  LGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVT 526
            L R   + TL  LRR    +  +     AR  H + +G++C   TP+G+NCGLVKNL + 
Sbjct: 537  LDRTCNMATLSHLRRVISPLTRSQPHFQARDLHSTQFGRLCPNETPEGQNCGLVKNLALM 596

Query: 527  -----GLVSTSILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVS 581
                  L +  +LE + E L    +EKL +       G  KV+ +GD  G   +  + V 
Sbjct: 597  IDVSENLPAGEVLETLRE-LDMQPLEKLQE-------GWGKVYFNGDLAGCTAEPRNLVE 648

Query: 582  ELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIK-------SLEG 634
            +LR  RR+  L   V ++ DE  ++V +  D GRI RPLL+V    K+         LE 
Sbjct: 649  KLRGLRRQARLSHTVNVRHDESLNDVLVNSDPGRIRRPLLLVHRNNKLALRRKHLDRLEA 708

Query: 635  KNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLS 694
               T+  L+D G++E +  EEEEDC  A G   L ++   +K   +TH E+D   +LG++
Sbjct: 709  GKLTWNDLIDLGLVEYIDAEEEEDCLIALGETDLKRN---RKTHAYTHMEVDPMVILGVA 765

Query: 695  CGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDC 754
               +PF  ++ + R    +   S Q++G   +N  +R DT  H L Y Q+P+ +T     
Sbjct: 766  TSNVPFPEYNSSPRCTMGA-GMSKQSLGMGQSNYRLRPDTRGHLLHYTQKPMVQT----- 819

Query: 755  LGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYK 814
                   HN +L RP    GQN +VAV  + GYN ED+L+ NR S++RG+ RS  +RSY 
Sbjct: 820  ---EAMKHNTLLTRPA---GQNMVVAVMSYHGYNMEDALIFNRGSIDRGLGRSTFMRSYF 873

Query: 815  AEVDNKEMQVKRR---SSDDMVNFGKIQSKIGRVD----SLDDDGFPFIGANLQSGDIVI 867
            +E        +RR     +D       + +  R +    +L+DDG  +    L+  +++I
Sbjct: 874  SE--------ERRYPGGQEDRFIIPDPEVRGARSEEAYFNLEDDGLIYPEVELRGREVLI 925

Query: 868  GKYADSG--------------ADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRS 913
            GK +                  + S+ ++H E+G V  V+LS +++G   + + +R  R 
Sbjct: 926  GKTSPPRFLSEPTDFMTPQRVRESSLTVRHGEKGTVDSVMLSESENGSRIARIRVRDQRI 985

Query: 914  PCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGK 973
            P LGDKF+S HGQKGV+G +   E  PFT  GI PD++INPHA PSR T   +LE   GK
Sbjct: 986  PELGDKFASRHGQKGVIGHIVPPEGMPFTASGIFPDLIINPHAIPSRMTIAHVLEMVGGK 1045

Query: 974  GIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFI 1033
              A  GK I        + F+    D + ++L   GF   G E LYDG+TG  + + IFI
Sbjct: 1046 LGAMNGKFID------GSAFSGDKEDDLRDELASLGFKHSGRESLYDGQTGRRIDADIFI 1099

Query: 1034 GPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANL 1093
            G  +YQ+L HM   K+  R+ GP+  LTRQP   R R GG++FGEMERDCLI HGA+  +
Sbjct: 1100 GVIYYQKLHHMVSGKLHARSRGPMQLLTRQPTEGRARMGGLRFGEMERDCLIGHGASMVI 1159

Query: 1094 HERLFTLSDSYQMHICRKCKNVA 1116
             +RL   SD     +  +  ++A
Sbjct: 1160 KDRLLDESDKTTQFVDSRSGHLA 1182


>gi|6606129|gb|AAF19077.1|AF107805_1 DNA-dependent RNA polymerase II RPB140 [Preussia minima]
          Length = 937

 Score =  464 bits (1193), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 326/971 (33%), Positives = 477/971 (49%), Gaps = 129/971 (13%)

Query: 201  AEKVFVAQEQICLKRLWV----SNSMGWTVAYKSE-NKRNRLI----VRLVDMSKFEDIK 251
            +EKV +AQE+     + V       + WT   +S   K  RLI    ++  D S     +
Sbjct: 1    SEKVLIAQERSAANIVQVFRKKQGPIPWTAEIRSAVEKGTRLISSFNIKWTDNSMIVKRQ 60

Query: 252  GGEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA--- 307
             G    +V  ++  ++P+ I+F ALG+ SD++I+N I +   D  +L +L  SI +    
Sbjct: 61   PGPFAYAVLPYIKADVPMAIVFRALGIVSDEDILNHIVYDRNDTQMLELLKPSIEEGAMI 120

Query: 308  ---DNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTK----QKARF 360
               +   D   +  N     DK +K           E M     P +   +    +KA F
Sbjct: 121  QERETALDWIARRGNQTGTKDKRLK--------FAREIMQREFLPHISQKEGQDTRKAFF 172

Query: 361  LGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLY 420
             GYM+  LLQ   GRR  D+RD F  KRL+LAG L+    ++      K M   L++ + 
Sbjct: 173  FGYMIHRLLQCVLGRRDEDDRDHFGKKRLDLAGPLIANLFRILFLKLTKDMFNYLRKCVD 232

Query: 421  GDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLR 480
             ++        L ASI+TNGL  + +TG W    K     +G+   L R     TL  LR
Sbjct: 233  AEQEFNAT-LALKASIVTNGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLR 291

Query: 481  RTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFE 539
            RT   V   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   VS  +   PI +
Sbjct: 292  RTNTPVGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGNESAPIID 351

Query: 540  QLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIK 599
             +    M+ L +          KVFV+G W+GV  +    VS ++  RR   L  ++ + 
Sbjct: 352  FMSQRNMDLLEEYDPIQNPTATKVFVNGTWVGVHSNPSQLVSVVQELRRNGTLSYEMSLI 411

Query: 600  RDELQSEVRIFMDAGRILRPLLVVE------NMGK-------IKSLEG------------ 634
            RD    E +IF DAGR++RPL VVE      N G        I+ L+             
Sbjct: 412  RDIRDREFKIFTDAGRVMRPLFVVETNYNKPNRGSLVLTKAHIEKLQADKEIDTSGMNDE 471

Query: 635  ----KNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYL------------LKDIEDK--- 675
                + Y +  L+  G++E +  EEEE        + L             +D ED    
Sbjct: 472  DTAERKYGWFGLIHDGVVEYLDAEEEEGAMIIMSPEDLDEHRDLMQGTQTQEDKEDNDRH 531

Query: 676  KPIK---------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTT 726
            K IK         +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   T
Sbjct: 532  KRIKPKPNPSIKTYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS-AMGKQAMGVALT 590

Query: 727  NPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLG 786
            N ++R++T+ + L+YPQ+PL  T   + L              EL  GQNAIVA+  + G
Sbjct: 591  NYALRMETMMNVLYYPQKPLATTRSMEYLR-----------FRELPAGQNAIVAIACYSG 639

Query: 787  YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK------IQS 840
            YNQEDS++MN++S++RG+FRS   R+Y         Q KR   + +  F K      ++ 
Sbjct: 640  YNQEDSVIMNQSSIDRGLFRSLFYRAYTE-------QEKRIGVNVLEQFEKPTRQDTLRL 692

Query: 841  KIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---------------DSGADHSIKLKHTE 885
            K G  D LDDDG    G  +   DI+IGK A                +  D S  L+ TE
Sbjct: 693  KGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIPGDAQELGQKTQNHTKRDVSTPLRSTE 752

Query: 886  RGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQG 945
             G+V +V+ ++N +G  F  V  R  + P +GDKF+S HGQKG +G    QE+ PFT +G
Sbjct: 753  NGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFASRHGQKGTIGITYRQEDMPFTREG 812

Query: 946  IVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQL 1005
            + PD++INPHA PSR T   L+E  L K       G   G +  ATPF   +V+++++ L
Sbjct: 813  LTPDLIINPHAIPSRMTIAHLVECLLSK------VGSLKGAEGDATPFTDVTVESVSKLL 866

Query: 1006 HRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPV 1065
               G+ + G E +Y+G TG+ +R+ +F+GPT+YQRL HM +DK+  R  GP+  LTRQPV
Sbjct: 867  VEHGYQQRGFEVMYNGHTGKKLRAQVFLGPTYYQRLRHMVDDKIHARARGPLQILTRQPV 926

Query: 1066 ADRKRFGGIKF 1076
              R R GG++F
Sbjct: 927  EGRARDGGLRF 937


>gi|431905258|gb|ELK10303.1| DNA-directed RNA polymerase III subunit RPC2 [Pteropus alecto]
          Length = 1207

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 346/1100 (31%), Positives = 518/1100 (47%), Gaps = 130/1100 (11%)

Query: 115  RLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVK 174
            RL++MTYS+ + V +++              T   Q I +  L        IGR+P+M++
Sbjct: 177  RLRDMTYSAPITVDIEY--------------TRGSQRIIRNALP-------IGRMPIMLR 215

Query: 175  SDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVS----NSMGW 224
            S  C + G       +  +C  D GGYFI+KG EKV + QEQ+   R+ V      ++G 
Sbjct: 216  SSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRIIVEADRKGTVGA 275

Query: 225  TVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIV 284
            +V   +  K++R      +M+    +K G   L    LS +IPI I+F A+GV SD+EIV
Sbjct: 276  SVTSSTHEKKSR-----TNMA----VKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIV 326

Query: 285  NLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTF----PPGESTE 340
             +I     +  ++     S+ +   K   F +   ALKY+   ++        P     E
Sbjct: 327  QMIG---TEEHVMAAFGPSLEEC-QKAQIFTQ-MQALKYIGNKVRRQRMWGGGPKKTKIE 381

Query: 341  ECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRR--------KCDNRDDFRNKRLELA 392
            E     L  S   T    +   +  KC+  A   RR        K D+RD + NKRLELA
Sbjct: 382  EARE--LLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKRLELA 439

Query: 393  GELLERELKVHIAHARKRMAKALQRDLYGDRTVR-PIEYYLDASILTNGLSRAFSTGAWS 451
            G+LL    +         M K   + +   R  +  +  ++    +TNG+  A STG WS
Sbjct: 440  GQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITNGMVNAISTGNWS 499

Query: 452  HPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLST 511
                + +R  G+   L R + +  L  + R   Q + T KV   R   PS WG +C   T
Sbjct: 500  LKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDT 558

Query: 512  PDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKL----ADDASYSLGGKFKVFVD 566
            P+GE CGLVKNL +   ++T + + PI +   N G+E +     ++ SY     F VF++
Sbjct: 559  PEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELSYP--NVFLVFLN 616

Query: 567  GDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENM 626
            G+ +GV +D    V+  R  RR   +   V I  +     V I  D GR+ RP ++V+  
Sbjct: 617  GNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKKQ 676

Query: 627  GK------IKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKF 680
                    ++ L      F+  L   ++E +   EE DC  A     + KD         
Sbjct: 677  KPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCNIALYEHTINKDT-------- 728

Query: 681  THCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLF 740
            TH E++   LLG+  G+IP+ +H+ + R  YQ      QA+G    N   R+DTL + L 
Sbjct: 729  THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-AMGKQAMGTIGYNQRNRIDTLMYLLA 787

Query: 741  YPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASL 800
            YPQ+P+ +T   +           ++   +L  GQNA VAV  + GY+ ED+LV+N+ASL
Sbjct: 788  YPQKPMVKTKTIE-----------LIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASL 836

Query: 801  ERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANL 860
            +RG  R    ++ K  +     Q   +    M++    +  I R + LD DG    G  +
Sbjct: 837  DRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLD-AATRKPIWRHEILDADGICSPGEKV 895

Query: 861  QSGDIVIGKYADSGA----------------DHSIKLKHTERGMVQKVVLSSNDDGKNFS 904
            ++  +++ K   +                  D  I  K      ++KV++SSN +     
Sbjct: 896  ENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLI 955

Query: 905  VVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPG 964
             + LRQ R P +GDKFSS HGQKGV G +  QE+ PF   GI PDI++NPH FPSR T G
Sbjct: 956  KMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVG 1015

Query: 965  QLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTG 1024
            +L+E   GK       G+  G   Y T F    V  + E L R G++  G + +  G TG
Sbjct: 1016 KLIELLAGKA------GVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDYVTSGITG 1069

Query: 1025 EMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL 1084
            E + + I+ GP +YQ+L HM  DK+  R      PL  QP   R R GG++ GEMERDCL
Sbjct: 1070 EPLEAYIYFGPVYYQKLKHMVLDKMHGRRRRSKQPLFGQPTEGRSRDGGLRLGEMERDCL 1129

Query: 1085 IAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIV 1144
            I +GA+  L ERL   SD++++ +C +C             G      +C  C S   + 
Sbjct: 1130 IGYGASMLLLERLMISSDAFEVDVCGQC-------------GLLGYSGWCHYCKSSCHVS 1176

Query: 1145 KANVPYGAKLLCQELFSMGI 1164
               +PY  KLL QEL SM I
Sbjct: 1177 SLRIPYACKLLFQELQSMNI 1196


>gi|9759599|dbj|BAB11387.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
          Length = 1194

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 359/1186 (30%), Positives = 570/1186 (48%), Gaps = 151/1186 (12%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
            F    GLV   ++S+N FI  G+ K   +   + +    DPS           +RF +V 
Sbjct: 60   FLKVRGLVKQHLDSFNYFINVGIHKIVKA--NSRITSTVDPS---------IYLRFKKVR 108

Query: 93   LDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYI 152
            + +PS    N     ++ P   RL +MTY++ + V +++   +      +K K+ ++   
Sbjct: 109  VGEPSII--NVNTVENINPHMCRLADMTYAAPIFVNIEYVHGSH----GNKAKSAKD--- 159

Query: 153  QKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVFV 206
                      N+IIGR+P+M++S  C + G ++      G+C  D GGYFIIKG EKV +
Sbjct: 160  ----------NVIIGRMPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFIIKGTEKVLL 209

Query: 207  AQEQICLKRLWVSN----SMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKV-LSVYF 261
             QEQ+   R+ + +    ++  +V   +E  +++ +++   M K       EK+ L ++ 
Sbjct: 210  IQEQLSKNRIIIDSDKKGNINASVTSSTEMTKSKTVIQ---MEK-------EKIYLFLHR 259

Query: 262  LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNAL 321
               +IPI I+  A+G+ SD+EIV ++     D      L  SI +  ++    +K   AL
Sbjct: 260  FVKKIPIIIVLKAMGMESDQEIVQMVG---RDPRFSASLLPSIEECVSEGVNTQK--QAL 314

Query: 322  KYVDKLIKGTTF--PP---GESTEECMNTYL----FPSLHGTKQKARFLGYMVKCLLQAY 372
             Y++  +K  ++  PP   G +     + +L     P  +  +QK  ++G M++ +++A 
Sbjct: 315  DYLEAKVKKISYGTPPEKDGRALSILRDLFLAHVPVPD-NNFRQKCFYVGVMLRRMIEAM 373

Query: 373  SGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDRTVRPI 428
              +   D++D   NKRLEL+G+L+    E   K  ++ A K +   L + +   R     
Sbjct: 374  LNKDAMDDKDYVGNKRLELSGQLISLLFEDLFKTMLSEAIKNVDHILNKPIRASRFDFSQ 433

Query: 429  EYYLDASI-LTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQ 487
                D+   ++ GL R  STG +     R  R  G+   L R + + ++  + +   Q +
Sbjct: 434  CLNKDSRYSISLGLERTLSTGNFDIKRFRMHR-KGMTQVLTRLSFIGSMGFITKISPQFE 492

Query: 488  YTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGM 546
             + KV   R   PS WG +C   TP+GE+CGLVKNL +   V+T   E P+    +  G+
Sbjct: 493  KSRKVSGPRSLQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTTDEEEGPLVAMCYKLGV 552

Query: 547  EKLADDASYSL--GGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQ 604
              L   ++  L     F V ++G  +G       F + LRR RR  ++   V +  +E Q
Sbjct: 553  TDLEVLSAEELHTPDSFLVILNGLILGKHSRPQYFANSLRRLRRAGKIGEFVSVFTNEKQ 612

Query: 605  SEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEED 658
              V +  D GR+ RPL++ +          +K L+    TF   +  G+IE +   EE +
Sbjct: 613  HCVYVASDVGRVCRPLVIADKGISRVKQHHMKELQDGVRTFDDFIRDGLIEYLDVNEENN 672

Query: 659  CCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSS 718
                   +    D         TH E++   +LG+  G+IP+ +H+ + R  YQ      
Sbjct: 673  ALVCLRAEAAKADT--------THIEIEPFTILGVVAGLIPYPHHNQSPRNTYQCA-MGK 723

Query: 719  QAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAI 778
            QA+G    N   R+DTL + L YPQRPL  T   + +G    G            GQNA 
Sbjct: 724  QAMGNIAYNQLNRMDTLLYLLVYPQRPLLTTRTIELVGYDKLG-----------AGQNAT 772

Query: 779  VAVNVHLGYNQEDSLVMNRASLERGMFRS---EHIRSYKAEVDN---KEMQVKRRSSDDM 832
            VAV    GY+ ED++VMN++SL+RG  R    + I +   + DN     + + +R+  D 
Sbjct: 773  VAVMSFSGYDIEDAIVMNKSSLDRGFGRCIVMKKIVAMSQKYDNCTADRILIPQRTGPDA 832

Query: 833  VNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGK-------------YADSG---AD 876
                       ++  LDDDG    G  ++  DI I K              +DS    A 
Sbjct: 833  ----------EKMQILDDDGLATPGEIIRPNDIYINKQVPVDTVTKFTSALSDSQYRPAR 882

Query: 877  HSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ 936
               K    E  +V +V L S+  G+      +R  R P LGDKFSS HGQKGV G +  Q
Sbjct: 883  EYFKGPEGETQVVDRVALCSDKKGQLCIKYIIRHTRRPELGDKFSSRHGQKGVCGIIIQQ 942

Query: 937  ENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP 996
            E+FPF+  GI PD+++NPH FPSR T G+++E    K       G+  G   Y + F   
Sbjct: 943  EDFPFSELGICPDLIMNPHGFPSRMTVGKMIELLGSKA------GVSCGRFHYGSAFGER 996

Query: 997  S-----VDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKF 1051
            S     V+ I+  L   GFS  G + LY G +GE V + IF+GP +YQ+L HM  DK+  
Sbjct: 997  SGHADKVETISATLVEKGFSYSGKDLLYSGISGEPVEAYIFMGPIYYQKLKHMVLDKMHA 1056

Query: 1052 RNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRK 1111
            R +GP   +TRQP   + + GG++ GEMERDCLIA+GA+  ++ERL   SD +++ +CR 
Sbjct: 1057 RGSGPRVMMTRQPTEGKSKNGGLRVGEMERDCLIAYGASMLIYERLMISSDPFEVQVCRA 1116

Query: 1112 CKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQ 1157
            C  +            K++   C  C +GD+I    +PY  KLL Q
Sbjct: 1117 CGLLGYY-------NYKLKKAVCTTCKNGDNIATMKLPYACKLLFQ 1155


>gi|45545349|gb|AAS67522.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Taphrina deformans]
          Length = 936

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 315/960 (32%), Positives = 478/960 (49%), Gaps = 108/960 (11%)

Query: 201  AEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE-----NKRNRLIVRLVDMSKFEDI--KG 252
            +EKV +AQE+     + V   +    V+Y +E      K ++LI  +    K   +   G
Sbjct: 1    SEKVIIAQERSAANMVQVFRKAPPSPVSYLAEIRSAIEKGSKLISSMQIKLKAAKVGSTG 60

Query: 253  GEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD 312
                 ++ ++ T+IPI I+F ALGV  D++I++ I +  +D  +L +L   I +A    D
Sbjct: 61   QTIAATLPYVKTDIPIVIVFRALGVVPDRDILDHICYDAKDRQMLEMLKPCIEEAFVIQD 120

Query: 313  EFRKGRNALKYVDK---LIKGTTFPPGESTEECMNTYLFPSLHGTK----QKARFLGYMV 365
                   AL ++ K    I  T        ++ +   + P +  ++    +KA FLGYMV
Sbjct: 121  R----EVALDFIGKRGSAIGVTKEKRLRYAQDILQKEMLPHITTSEGFETRKAFFLGYMV 176

Query: 366  KCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTV 425
              LL     RR  D+RD F  KR++LAG LL    ++      K + + + + +   +  
Sbjct: 177  HRLLLCALERRDPDDRDHFGKKRIDLAGPLLAGLFRMLFKRLTKDIRQYMTKCVDSGKEF 236

Query: 426  RPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQ 485
              +   +  + +TNGL  + +TG W    K+     G+   L R     TL  LRRT   
Sbjct: 237  N-LPLAVKHTTITNGLRYSLATGTWGDQKKQMNARVGVSQVLNRYTYASTLSHLRRTNTP 295

Query: 486  VQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNS 544
            +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   VS  S   PI E L   
Sbjct: 296  IGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMSYVSVGSASAPIIEFLEEW 355

Query: 545  GMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQ 604
            GME L D    +     K+FV+G W+GV  D    V  LR  RR+ ++  +V + RD  +
Sbjct: 356  GMESLEDYNPSAGRPSTKIFVNGVWLGVHSDPGHLVKTLRSLRRKTDISPEVSVVRDIRE 415

Query: 605  SEVRIFMDAGRILRPLLVVENMGKIKSLEG-----------------------KNYTFQA 641
             E+R+F DAGR+ RPL VV +    +  E                        + + +  
Sbjct: 416  KELRLFTDAGRVCRPLFVVHDDESAEKSEAGSLVLKKEHVQRMAYSKEHPEDDEKFGWAQ 475

Query: 642  LLDHGIIELVGTEEEEDCCTAW------GIKYLLK---DIEDKKPIK------------- 679
            +L +GI E +  EEEE    A         K+++    + ED+K  K             
Sbjct: 476  VLSNGIAEYLDAEEEETVMIAMTPDDLEATKHMMAGYVEPEDEKERKIAAEAAKRLRPAV 535

Query: 680  ------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVD 733
                  +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+D
Sbjct: 536  NKAQHLWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS-AMGKQAMGVFLTNYQVRMD 594

Query: 734  TLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSL 793
            T+++ L+YPQ+PL  T   +            L   EL  GQNAIVA+  + GYNQEDS+
Sbjct: 595  TMANILYYPQKPLATTRSME-----------YLKFRELPAGQNAIVAILCYSGYNQEDSM 643

Query: 794  VMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGF 853
            +MN++S++RG+FRS   R Y+   +  +M  + +  +       ++ K    D L+DDG 
Sbjct: 644  IMNQSSIDRGLFRSMFYRVYQDSEEKIDMN-QAQEFEKPTRETTMKMKRSTYDKLEDDGL 702

Query: 854  PFIGANLQSGDIVIGKYA-----------------DSGADHSIKLKHTERGMVQKVVLSS 896
               G  +   D+++GK A                  +  D S +L+ TE G++ KV++S+
Sbjct: 703  VAPGTRVSGEDVIVGKTAGLLKDENLADLASRSATQTKRDVSTQLRSTEAGIIDKVMVST 762

Query: 897  NDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHA 956
            N DG  F  V +R  + P +GDKF+S HGQKG +G     E+ PFT +GIVPD++INPHA
Sbjct: 763  NSDGHKFVKVRIRATKIPQIGDKFASRHGQKGTIGVTYRNEDMPFTSEGIVPDLIINPHA 822

Query: 957  FPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTE 1016
             PSR T   L+E  L K       G  SG +  ATPF   +V+A++  L   G+   G E
Sbjct: 823  IPSRMTVAHLVECQLSK------VGSLSGFEGDATPFTDVTVEAVSNNLREQGYHSRGFE 876

Query: 1017 RLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKF 1076
             +Y+G TG  + + +F+GPT+YQRL H+ +DK+  R  GP+  LTRQPV  R R GG++F
Sbjct: 877  IMYNGHTGRKLMAQVFLGPTYYQRLKHLVDDKIHARARGPMQILTRQPVEGRARDGGLRF 936


>gi|109289916|gb|ABG29322.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative [Solanum
            bulbocastanum]
          Length = 304

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 223/268 (83%), Positives = 243/268 (90%), Gaps = 7/268 (2%)

Query: 906  VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQ 965
            V+L  VRSPCLGDKFSSMHGQKGVLG+LESQENFPFT+QGIVPDIVINPHAFPSRQTPGQ
Sbjct: 44   VNLEHVRSPCLGDKFSSMHGQKGVLGYLESQENFPFTVQGIVPDIVINPHAFPSRQTPGQ 103

Query: 966  LLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGE 1025
            LLEA+LGKGIA LG G     ++YATPF+T SVDAI +QLH  GFS+WG ER+Y+GRTGE
Sbjct: 104  LLEASLGKGIA-LGGG-----EKYATPFSTLSVDAILKQLHGRGFSRWGNERVYNGRTGE 157

Query: 1026 MVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLI 1085
            MV SLIF+GPTFYQRLIHM+EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLI
Sbjct: 158  MVHSLIFMGPTFYQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLI 217

Query: 1086 AHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVK 1145
            AHGAAANLHERLFTLSDS QMHIC KCKN+ANVIQR   GG K+RGP+CR C+S +DIVK
Sbjct: 218  AHGAAANLHERLFTLSDSSQMHICGKCKNMANVIQRSAPGG-KIRGPFCRFCESVEDIVK 276

Query: 1146 ANVPYGAKLLCQELFSMGITLKFDTEFC 1173
             +VPYGAKLLCQELFSMGI+LKFDTE C
Sbjct: 277  VDVPYGAKLLCQELFSMGISLKFDTEIC 304


>gi|391325293|ref|XP_003737173.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
            [Metaseiulus occidentalis]
          Length = 1162

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 359/1198 (29%), Positives = 557/1198 (46%), Gaps = 157/1198 (13%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
            F    GLV H I S++ F++  +++  ++    IV    DP+      W    M +  + 
Sbjct: 43   FLKTKGLVLHHIASFDYFVETEMREILEA--NAIVYSEADPN------W---YMEYTDIR 91

Query: 93   LDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYI 152
            +  PS   G G       P   RL++MTY + + V +              +K G E  I
Sbjct: 92   IGTPSIVEGPGMIAATT-PYQCRLRDMTYFAPIYVDI-------------AYKRGNELVI 137

Query: 153  QKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFV 206
            + E        + IGR+P+M+KS  C +         +  +C  DHGGYFI+KG E+V +
Sbjct: 138  RNE--------LEIGRMPIMLKSKGCVLHSKTPWELTKLRECPNDHGGYFIVKGVERVVL 189

Query: 207  AQEQICLKRLWVSNS----MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFL 262
              EQ+   R+ +       +   V   +  +++R    +++       K G+  +     
Sbjct: 190  MAEQLANNRILIDEDSKGVISCQVTSSTHERKSR--TNVIE-------KNGKFYVKHNSF 240

Query: 263  STEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALK 322
              +IP+ ++F A+GV +D  I  +I  T E+   + + F       +K   F +   AL+
Sbjct: 241  VDDIPVVVMFRAMGVQNDLRIHQMIG-TEEN---IQVAFVGSMVECHKLHVFTQ-EQALR 295

Query: 323  YVDKLIKGTTFPP-------GESTEECMNTYLF-----PSLHGTKQKARFLGYMVKCLLQ 370
            ++   +K   F P        ++ E  +++ +      P  +  + +A +LG MV+ ++Q
Sbjct: 296  FLAAKMKSRVFGPQKVEDPLDKAWEAVLSSVINHIPAQPPEYNMRLRAHYLGLMVRRIIQ 355

Query: 371  AYSGRRKCDNRDDFRNKRLELAG--------ELLER---ELKVHIAHARKRMAKALQRDL 419
            A   R   D+RD + NKR+EL G        +LL+R   ELK  IA  +  M +  Q D 
Sbjct: 356  AKYDRGFIDDRDYYGNKRVELPGSMISLLFEDLLKRVNSELKT-IADKQIPMMRVTQFD- 413

Query: 420  YGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDL 479
                    I  ++  S +T GL  A STG W         I G+   L R N +  L  +
Sbjct: 414  --------IVKFMKPSTITTGLINAISTGNWIIRRFNMHTI-GVTQVLSRLNYISCLGMM 464

Query: 480  RRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFE 539
             R     + + KV   R   PS +G +C   TP+GE CGLVKN+ +   ++ +    + +
Sbjct: 465  TRVNSHFEKSRKVSGPRSLQPSQFGMLCPSDTPEGEACGLVKNMALLAHITINSSADLTD 524

Query: 540  QLFNSGME--KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVE 597
               + G++  +L   A +S    + VF +G   GV +D   F+ E+R+ RR+  L   + 
Sbjct: 525  FFISLGVQDVRLLCGAEFSHSHIYHVFHNGVIKGVIEDHRRFIEEVRQFRRKGFLSPYLS 584

Query: 598  IKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIELV 651
            +  + +   V I  D GR  RP ++VEN         ++ L      FQ  LD G++E +
Sbjct: 585  VYPNHIHRCVYIVTDGGRFCRPFIIVENERPRVTSEHLEDLNSHILNFQDFLDIGLVEFL 644

Query: 652  GTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLY 711
               EE D   A       KDI DK     TH E+    +L    GIIPF +H+ + R  Y
Sbjct: 645  DVNEENDALIA----VYEKDITDKT----THLEIAPFTILSACAGIIPFPHHNQSPRNTY 696

Query: 712  QSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPEL 771
            Q      QA+G    N  +R+DTL + + +PQRPL  T               ++    +
Sbjct: 697  QCAM-GKQAMGVIGYNQHMRIDTLQYNMVFPQRPLVSTKAIK-----------LINFDRM 744

Query: 772  YNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDD 831
              GQN  +AV  + GY+ ED++V+N+ S+ERG      + S K ++         R    
Sbjct: 745  PAGQNVCLAVMSYSGYDIEDAIVLNKNSMERGFGECRVVTSQKCQLRRYPNMACDRILGP 804

Query: 832  MVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA------------DHSI 879
            +V+    +  I     LD DG    G  +  G ++I ++  +G             +  +
Sbjct: 805  LVD-ASTRKPIFDHQCLDYDGIVMPGETVVKGQVLINRHIPAGTASLDPGQPIEYKEMPL 863

Query: 880  KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENF 939
            + + T    + +V++S N DG+    V + Q R P +GDKFSS HGQKGV+G +  QE+ 
Sbjct: 864  RYQGTVPAQIDRVMVSVNADGETLFKVVMSQTRKPEIGDKFSSRHGQKGVVGLIVGQEDM 923

Query: 940  PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPS-- 997
            PF  QG+VPDI++NPH FPSR T G+++E   GK  AAL     SG  + AT F   S  
Sbjct: 924  PFDDQGVVPDIIMNPHGFPSRMTVGKMIEILAGKA-AAL-----SGEVQDATAFENKSEG 977

Query: 998  ----VDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
                   + E L R GF   G + L  G  G+ +++ I+ G  +YQRL HM +DK+  R 
Sbjct: 978  EPVTCSEMGELLQRNGFHFQGKDILTCGVNGQPMQAYIYRGTCYYQRLKHMVQDKMHARA 1037

Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
             GP   LTRQP   R R GG++ GEMERDCLI HGAA  L ERL   SD+ ++ IC  C 
Sbjct: 1038 RGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGHGAAMLLRERLMFSSDATEVDICNVCG 1097

Query: 1114 NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
             +  +              +C+ C S   +    +PY  KLLCQEL +M I  +   E
Sbjct: 1098 LIGFL-------------KWCQRCKSSQAMCTVKMPYAFKLLCQELCAMNIAPRLKLE 1142


>gi|257076606|ref|ZP_05570967.1| DNA-directed RNA polymerase subunit B [Ferroplasma acidarmanus fer1]
          Length = 1195

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 381/1271 (29%), Positives = 597/1271 (46%), Gaps = 220/1271 (17%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVE---------PG---YDPSK-KGE 78
            +FF    +V++QI+S N F  +  +   D+  + IV+         PG    DPSK KG+
Sbjct: 7    AFFKSESVVNYQIDSMNYFYAS--KNNPDNIMQQIVDETKISDDATPGVIDLDPSKTKGK 64

Query: 79   ------GEWRYASMRFGQVTL--DKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQ 130
                  G  R      G  T+  DKP     +G   + + P+ ARL+++ Y + + ++++
Sbjct: 65   DIKIYFGRERQNGKATGDPTIWVDKPEIKEASGA-TNQITPQEARLRDLNYMAPIMLRLR 123

Query: 131  FQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VE 184
                                 I ++ +  +   I IG IPVMV+S +C +        +E
Sbjct: 124  ---------------------IVEDGIERDANTIKIGEIPVMVRSKICTLSEQNLDLYIE 162

Query: 185  KGDCDFDH----------------GGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAY 228
            K +   D                 GGYFII G+E+V V+ E +   ++ V     +   Y
Sbjct: 163  KNNGPIDETRENKLRYVDEDPTDPGGYFIIGGSERVIVSLEDLAPNKILVE----YEEKY 218

Query: 229  KSENKRNRLIVR------LVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKE 282
             S  +  ++  +      L+ M K  D   G   +S+  ++  IP+ IL  ALG+  D +
Sbjct: 219  DSRVEVAKIFSQKSGFRALISMEKGSD---GIINVSIPTVAGTIPLVILMKALGIDKDVD 275

Query: 283  IVNLIDFTCEDCSILNILFASIHDADN----KCDEFRKGRNALKYVDKLIKGTTFPPGES 338
            I   I +T  D  +  +++A+I D+ N      +      +AL Y++K      F  G++
Sbjct: 276  IHEAI-YT--DPRMDPLIYANIEDSRNLKILPPNGINNNEDALSYLEK-----RFAAGQA 327

Query: 339  TE-------ECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNK 387
             E       + ++  L P L        +KA +LG M + LL+   G R  D++D + NK
Sbjct: 328  KEFRDKKITQMLDRALLPHLGDDVSDRLKKAIYLGRMARSLLELNLGMRHVDDKDHYANK 387

Query: 388  RLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFST 447
            R++L+G+LL+   +       K +   L++     R +R +   +   +LT  +  + +T
Sbjct: 388  RIKLSGDLLDELFRNAFQSVMKDLKYQLEKTYNKKRGIR-LRPAVRQDLLTQKVLHSMAT 446

Query: 448  GAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKIC 507
            G W     RT    G+   L R + + TL  LRR    +  +    +AR  HP+ WG+IC
Sbjct: 447  GNWIG--GRT----GVSQLLDRTSNMSTLSHLRRIISPLTRSQPHFEARDLHPTQWGRIC 500

Query: 508  FLSTPDGENCGLVKNLGVTGLVSTSILEP--IFEQLFNSGMEKLADDASYSLGGKFKVFV 565
               TP+G+NCGLVKN  +   V+  I +P  + E+L N  + ++  + +       ++++
Sbjct: 501  PNETPEGQNCGLVKNASLIINVTQGI-DPDIVMEELQNMDIHEVTKEEASG-----RIYL 554

Query: 566  DGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN 625
            +GD+IG   D       +R  RR  +L  +V +K D   +EV I  D GR+ RPL VV N
Sbjct: 555  NGDFIGYHNDPAILTDTIRNLRRSGKLSNEVNVKYDSNTNEVIINCDRGRLRRPLFVV-N 613

Query: 626  MGK-------IKSLEGKNYTFQALLDHGIIELVGTEEEE------------DCCTAWGIK 666
             GK       ++ L    YT   L+  G IE +  EEEE            D C   G K
Sbjct: 614  EGKTVMNEEMLEKLRMGEYTVNDLISSGAIEWLDAEEEENAYISVFPFEFPDNCPDCG-K 672

Query: 667  YLLKD-------------IE-----------DKKPIKFTHCELDMSFLLGLSCGIIPFAN 702
             L +D             +E           +   +  THCE+D S +LG+   +IP+  
Sbjct: 673  VLYRDNVTWINPGNSDVTLECDECHAHFKGTNNLSMDHTHCEIDASMILGVVASLIPYPE 732

Query: 703  HDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLG---KPG 759
            H+ + R+   S     Q+IG P  N  IR DT  H L YPQ PL  T + D +    KP 
Sbjct: 733  HNSSPRITIASAM-IKQSIGLPQANYRIRTDTRGHLLHYPQIPLVTTKVMDFIKYRRKPA 791

Query: 760  YGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAE--- 816
                          GQN +VA+  + GYN +D+++MN+AS+ERG+ RS   R+Y AE   
Sbjct: 792  --------------GQNFVVAIVSYHGYNMQDAIIMNKASIERGLGRSSFFRTYTAEERR 837

Query: 817  -VDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---- 871
                +E + +  S D +    +   K     +LD++G  F  + ++  D+++GK +    
Sbjct: 838  YPGGQEDKFEIPSHDVLGARAEEYYK-----NLDENGIIFPESKVEGSDVLVGKTSPPRF 892

Query: 872  --DSGADH---------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKF 920
              +  AD          S+ ++ TE G V  V L+ ++       V +R  R P  GDKF
Sbjct: 893  LEEENADKLGPLRRRESSVTVRPTESGYVDNVFLTVSESNSRIIKVKVRSDRIPQPGDKF 952

Query: 921  SSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGK 980
            +S HGQKGV+G++ +QE+ PFT  GI+PD++ NPH+ PSR T G +LE    K     G+
Sbjct: 953  ASRHGQKGVIGYVAAQEDMPFTEDGIIPDLLFNPHSVPSRMTLGHVLEMMGAKVSTMSGE 1012

Query: 981  GICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQR 1040
             I S      T F      ++ EQL + GF + G E +YDG TG+     IF+G  +YQ+
Sbjct: 1013 NIDS------TIFDGEPERSLREQLKKYGFRESGNEVMYDGITGKKFEVDIFMGVIYYQK 1066

Query: 1041 LIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTL 1100
            L HM   K   R+ GPV  LTRQP   R R GG++FGEMERD LIAHGA+  + +RL   
Sbjct: 1067 LHHMVASKFHARSRGPVQILTRQPTEGRSRQGGLRFGEMERDTLIAHGASMVIKDRLLDQ 1126

Query: 1101 SDSYQMHIC--RKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQE 1158
            SD   +++C    C ++A  I     G  +     C  C +  +I      Y  KL+  E
Sbjct: 1127 SDGTILYVCGNPTCGHIA--IYDFRKGTLR-----CPACGNTGNIYPIETSYAFKLMRDE 1179

Query: 1159 LFSMGITLKFD 1169
            L SMGI ++ +
Sbjct: 1180 LSSMGIVMRLE 1190


>gi|115503929|ref|XP_001218757.1| DNA-directed RNA polymerase III [Trypanosoma brucei brucei strain
            927/4 GUTat10.1]
 gi|83642239|emb|CAJ15945.1| DNA-directed RNA polymerase III, putative [Trypanosoma brucei brucei
            strain 927/4 GUTat10.1]
 gi|261325981|emb|CBH08807.1| DNA-directed RNA polymerase III, putative [Trypanosoma brucei
            gambiense DAL972]
          Length = 1129

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 356/1196 (29%), Positives = 559/1196 (46%), Gaps = 135/1196 (11%)

Query: 27   RKAAV--SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYA 84
            RK A+  +  N  GL++H + S++  I   L +   +     ++   DP           
Sbjct: 15   RKLALLPALINMKGLLNHHVASFDHLINVELGRILLNESNREIKSSIDPD---------F 65

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKF 144
            S+R+  + + +P    G G     + P   R +++TY   + V V++             
Sbjct: 66   SIRYSGIRVCRPREIVGKGQLPKPVSPHECRTRDLTYRGDIVVDVEY------------- 112

Query: 145  KTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFII 198
             T R++   K + ++  TNI IG IP+M+KS  C + G      +   +C  D GGYFII
Sbjct: 113  -TSRDR--SKRICTE--TNIKIGTIPIMLKSSSCNLYGKGREELIAMRECPLDPGGYFII 167

Query: 199  KGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLS 258
            KG EKV + QEQ    R+ +       +    ++K +  I +          + G  V+ 
Sbjct: 168  KGVEKVCLVQEQQSKNRVIIEADDNGDIVAHVQSKTHYSISKCS-----VTFRKGRIVMV 222

Query: 259  VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGR 318
                  +IPI ++  ALG+ SD++I   I  +    +  ++LFA    A +     +   
Sbjct: 223  HRSFKEDIPIVVVLKALGMESDQQIAQHIGVSP---AFQSVLFACFEHAASL--NVKTQD 277

Query: 319  NALKYVDKLIKGTTFPPGES-------------TEECMNTYLFPSLHGTKQ-------KA 358
            +AL ++ +  K T +   E+              E   N  L     G  Q       KA
Sbjct: 278  DALHFIGERRKETFWEMDETQQRHVQKSKADSAAEFLANVLLCHIREGEVQRDWNFRHKA 337

Query: 359  RFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRD 418
             ++ +MV+ +++A       D RD + NKR E  G L+    +  +    + +  A+ + 
Sbjct: 338  LYVCFMVRRMVEASVDSSLLDERDFYGNKRFETTGTLMGLLFEDLLKQYNRVVKTAMDQL 397

Query: 419  LYGDRTVRP--IEYYLDA--SILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQ 474
            L    T +P  ++  +++   ++ NG+  A S+G W        R  GI   L R + + 
Sbjct: 398  LSKKDTTKPFNLKQLMESKMEVIQNGMRVALSSGRWELKRFNMSR-QGITQVLSRLSYIS 456

Query: 475  TLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSIL 534
             +  + R     + + K+   R   PS WG +C   TP+GE+CGLVKN  +   V+  + 
Sbjct: 457  CIGMMTRLASSFEKSRKISGPRSLQPSQWGMVCPCDTPEGESCGLVKNFAILSQVTLDMD 516

Query: 535  EP-IFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELP 593
            +  +    +N G+E++   +       + VF++G  +G+ +        +R  RR   L 
Sbjct: 517  DSFVRAAAYNLGVEEVDCISPNEFLKYYTVFLNGTLMGIHRYPSRLCRGVRTLRRSGRLH 576

Query: 594  TQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHG 646
              V I  ++ Q  V+I  D GRI+R  +VV + GK       + +L     +    L  G
Sbjct: 577  PHVSIAINDRQKSVQIGCDGGRIVRLYIVVRD-GKPAVTSQHLDNLSSGKCSINDFLAEG 635

Query: 647  IIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHA 706
            ++E +   E  DC  A       KDIE       TH E++   LLG+  GIIPF +H+ +
Sbjct: 636  LVEFIDVNEANDCLIA----VYPKDIEQYT----THLEIEPLSLLGVVAGIIPFPHHNQS 687

Query: 707  RRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHIL 766
             R  +QS     QA+G    N  IR+DT+     YPQRPL RT   +       G     
Sbjct: 688  ARNTFQSAM-GKQALGTIAYNQYIRMDTVLMLGAYPQRPLCRTKAMNLTNYEILG----- 741

Query: 767  PRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKR 826
                   G NA+V V  + GY+ ED+ V NR+SL+RG  R   +R +       E++++R
Sbjct: 742  ------AGINAMVCVMSYSGYDIEDAQVYNRSSLDRGYGRCVVLRKH-------EVELER 788

Query: 827  RSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA----DHSIKLK 882
              + +        S +GR  +L+ DG    GA ++  DI++ KY    +     + +  K
Sbjct: 789  LPNGEYDIILPADSNVGRHSALNSDGIASKGAVVRQFDILVNKYTPVPSMEPRPNPLVYK 848

Query: 883  HTERGMVQKVVLSS-NDDGKNFSV-----VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ 936
            + +  +V  VV+S   D  ++  V     V  R+VR P  GDKFSS HGQKGV+G +   
Sbjct: 849  YPQPAVVDHVVISPPGDSDRSMDVEQKIKVVTREVRGPEPGDKFSSRHGQKGVVGLITDG 908

Query: 937  ENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP 996
             N PF  QGI PD+++NPH FPSR T G+LLE    K ++AL      G     T F   
Sbjct: 909  VNMPFNEQGICPDMIMNPHGFPSRMTVGKLLELVSSK-VSALTGKFGDG-----TAFGGD 962

Query: 997  SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGP 1056
              + + E+L R G++  G +  Y G TGEM+R+ +F GP +YQRL HM  DK+  R TGP
Sbjct: 963  KAEDLGEELIRHGYNYHGKDIFYSGVTGEMLRAYVFFGPIYYQRLKHMVTDKMHARATGP 1022

Query: 1057 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVA 1116
               LTRQP   R R GG++ GEMERDC++ +GA+  L+ERL   SD + + ICR C    
Sbjct: 1023 RSMLTRQPTEGRSRSGGLRVGEMERDCMVGYGASNLLNERLLVSSDLFTIDICRCC---- 1078

Query: 1117 NVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTEF 1172
                     G      YC  C++ + + + NVPY  KLL QEL  MGI+ +   +F
Sbjct: 1079 ---------GFMGYNGYCSYCNAKNTVSRVNVPYAFKLLLQELQGMGISTRLSLDF 1125


>gi|342179780|emb|CCC89254.1| putative DNA-directed RNA polymerase III [Trypanosoma congolense
            IL3000]
          Length = 1137

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 362/1204 (30%), Positives = 547/1204 (45%), Gaps = 136/1204 (11%)

Query: 18   GEEFLKTFCRKAAV--SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSK 75
            G+E+     RK A+  +  N  GL++H + S++  IK  L +   +     ++   DP  
Sbjct: 9    GDEYA---ARKLALLPALINMKGLLNHHLASFDHLIKVELGRILLNESNREIKSSIDPD- 64

Query: 76   KGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT 135
                     S+R+  + +  P    G G     + P   R +++TY   + V V++    
Sbjct: 65   --------FSIRYSNIRVCHPREIVGKGQLPKPVSPHECRTRDLTYRGDVVVDVEYTSRD 116

Query: 136  QKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCD 189
            + + T  +                  TNI IG IPVM+KS  C + G      +   +C 
Sbjct: 117  RSKRTCTE------------------TNIKIGTIPVMLKSCCCNLYGKSREELIAMRECP 158

Query: 190  FDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFED 249
             D GGYFIIKG EKV + QEQ    R+ +       +    ++K +  I +         
Sbjct: 159  LDPGGYFIIKGVEKVCLVQEQQSKNRVIIEADDNGDIVAHVQSKTHYSISKCS-----VT 213

Query: 250  IKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADN 309
             K G  V+       +IPI +L  ALG+ SD++I   I  +     +L   F      + 
Sbjct: 214  FKKGRVVMLHRSFKEDIPIVVLLRALGMESDQQIAQHIGSSPAFQKLLFGCFEHAASVNV 273

Query: 310  KCDEFRKGRNALKYVDKLIKGTTFPPGESTEECM-------------NTYLFPSLHGTKQ 356
            K  E     +AL ++ +  K T +   ++ +  +             N  L     G  Q
Sbjct: 274  KTQE-----DALHFIGERRKETFWEMDDTQQRQIHKSKADSAADFLANVLLCHIREGEVQ 328

Query: 357  -------KARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARK 409
                   KA ++ YMV+ +L+A       D RD + NKR E  G L+    +  +    +
Sbjct: 329  RDWNFRHKALYVCYMVRRMLEASLDSSLLDERDFYGNKRFETTGALMGLLFEDLLKQYNR 388

Query: 410  RMAKALQRDLYGDRTVRP--IEYYLDA--SILTNGLSRAFSTGAWSHPFKRTERISGIVA 465
             +  A+ + L    T +P  I+  +++   ++ NG+  A STG W        R  GI  
Sbjct: 389  VVKTAMDQLLSKKDTTKPFNIKQLMESKMEVIQNGMRVALSTGRWELKRFNMSR-QGITQ 447

Query: 466  NLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV 525
             L R + +  +  + R     + + K+   R   PS WG +C   TP+GE+CGLVKN  +
Sbjct: 448  VLSRLSYISCIGMMTRLASSFEKSRKISGPRSLQPSQWGMVCPCDTPEGESCGLVKNFAI 507

Query: 526  TGLVSTSILEP-IFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELR 584
               V+  + +  +    +N G+E++           F VF++G  IG+ +        +R
Sbjct: 508  LSQVTLDMDDTFVRAAAYNLGVEEVDAITPNEFLTYFTVFLNGTLIGIHRYPNRLCRGVR 567

Query: 585  RKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYT 638
              RR   L   V I  ++ Q  V+I  D GRI+R  +VV N         + +L     +
Sbjct: 568  SLRRSGRLHPHVSIAVNDHQKSVQIGCDGGRIVRLYMVVRNGEPAVTSKHLDNLSSGRCS 627

Query: 639  FQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGII 698
                L  G++E +   E  DC  A       KDIE       TH E++   LLG+  GII
Sbjct: 628  INDFLAEGLVEFIDVNEANDCLIA----VYPKDIEKYT----THLEIEPLSLLGVVAGII 679

Query: 699  PFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKP 758
            PF +H+ + R  +QS     QA+G    N  IR+DT+     YPQRPL RT   +     
Sbjct: 680  PFPHHNQSARNTFQSAM-GKQALGTIGYNQYIRMDTVLMLGIYPQRPLCRTKAMNLTNYE 738

Query: 759  GYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVD 818
              G            G NA+V V  + GY+ ED+ V NR SL+RG  R   +R +     
Sbjct: 739  SLG-----------AGINAMVCVMSYSGYDIEDAQVYNRCSLDRGYGRCIVLRKH----- 782

Query: 819  NKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA--- 875
              E++++R    +        S  G+  +L+ DG    GA ++  DI++ KY    +   
Sbjct: 783  --EVELERLPHGEYDIVLPADSNAGKYRALNSDGIASKGAIVRQFDILVNKYTPVPSLEP 840

Query: 876  -DHSIKLKHTERGMVQKVVLS-SNDDGKNFSV-----VSLRQVRSPCLGDKFSSMHGQKG 928
              + +  K+ +  +V  VV+S   D  ++  V     V  R+VR P  GDKFSS HGQKG
Sbjct: 841  RPNPLVYKYPQPAVVDHVVISPPGDSDRSMDVEQKIKVVTREVRIPEPGDKFSSRHGQKG 900

Query: 929  VLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKR 988
            V+G +    N PF  QGI PD+++NPH FPSR T G+LLE    K ++AL      G   
Sbjct: 901  VVGLITDGVNMPFNEQGICPDMIMNPHGFPSRMTVGKLLELVSSK-VSALTGRFGDG--- 956

Query: 989  YATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDK 1048
              T F     + + E+L R GF+  G +  Y G TGE +   +F GP +YQRL HM  DK
Sbjct: 957  --TAFGGDKAEDMGEELLRHGFNYHGKDVFYSGITGEKLHGHVFFGPIYYQRLKHMVTDK 1014

Query: 1049 VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHI 1108
            V  R TGP   LTRQP   R R GG++ GEMERDC++ +GA+  L+ERL   SD + + I
Sbjct: 1015 VHARATGPRSMLTRQPTEGRSRNGGLRVGEMERDCMVGYGASKLLYERLLVSSDLFTVDI 1074

Query: 1109 CRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
            CR C             G      YC  C + + + + NVPY  KLL QEL  MGI+ + 
Sbjct: 1075 CRSC-------------GFLGYSGYCSYCSTRNSVSRVNVPYAFKLLLQELQGMGISARL 1121

Query: 1169 DTEF 1172
              +F
Sbjct: 1122 TLDF 1125


>gi|195431078|ref|XP_002063575.1| GK21338 [Drosophila willistoni]
 gi|194159660|gb|EDW74561.1| GK21338 [Drosophila willistoni]
          Length = 999

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 338/1062 (31%), Positives = 518/1062 (48%), Gaps = 119/1062 (11%)

Query: 164  IIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLW 217
            ++IGR+P+M++S  C + G  +       +C  D GGYF+++G EKV + QEQ+   ++ 
Sbjct: 1    MLIGRMPLMLRSSNCVLSGKTEFELSKLNECPLDPGGYFVVRGQEKVILIQEQLSWNKML 60

Query: 218  VSNSMGWT---VAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFA 274
              +  G     V   +  K++R +V    +SK      G   L    ++ +IPI ++F A
Sbjct: 61   TEDFNGVVQCQVTSSTHEKKSRTLV----LSKH-----GRYYLKHNSMTDDIPIVVIFKA 111

Query: 275  LGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYV-DKLI----- 328
            LG+ SD+EI++ I     D    N   AS+ +A N    F + R AL Y+  KL+     
Sbjct: 112  LGIVSDQEIMSHIGV---DPQSQNRFGASLLEAFN-LKIFTQQR-ALDYMGSKLVVKRFQ 166

Query: 329  -KGTTFPPGESTEECMNTYL--FPSLHGTKQ-KARFLGYMVKCLLQAYSGRRKCDNRDDF 384
               T  PP E+ +  M T L   P  +   Q KA ++  MV+ ++ A   +   D+RD +
Sbjct: 167  SATTKTPPEEARDLLMTTILAHVPVDNFNFQMKAIYVALMVRRVMAAELDKTLFDDRDYY 226

Query: 385  RNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEY-------YLDASIL 437
             NKRLELAG L+     +      KRM   L+  +  D+ +  ++        ++ A+ +
Sbjct: 227  GNKRLELAGSLIS----LMFEDLFKRMNWELK--MIADKNIPKVKAAQFDVVKHMRAAQI 280

Query: 438  TNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARY 497
            T GL  A S+G W+    + ER  G+   L R + +  L  + R   Q + + KV   R 
Sbjct: 281  TAGLESAISSGNWTIKRFKMER-GGVTQVLSRLSYISALGMMTRVNSQFEKSRKVSGPRS 339

Query: 498  PHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKLADDASYS 556
              PS WG +C   TP+GE CGLVKNL +   ++T + E P+    +N+G+E + + +   
Sbjct: 340  LQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVDEHPVMILAYNAGVEDIREVSGNP 399

Query: 557  LGGK--FKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAG 614
            +     F VF++G+ +G+  +    V  +R  RR+  + + V I     Q  V +  D G
Sbjct: 400  INNPHVFLVFINGNVLGLTLNHKHLVKNMRYMRRKGRIGSFVSIHTSYSQRCVFVHTDGG 459

Query: 615  RILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYL 668
            R+ RP ++VE          +  L+     F   L  G+IE +   EE D   A      
Sbjct: 460  RLCRPYIIVEKCRPLVKQHHLDELQRGIRKFDDFLLDGLIEYLDVNEENDSFIAC----- 514

Query: 669  LKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNP 728
                E+      TH E++   LLG+  G++P+ +H+ + R  YQ      QA+G    N 
Sbjct: 515  ---YEENINPTTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAM-GKQAMGMIGYNQ 570

Query: 729  SIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYN 788
              R+D+L + L YPQ P+ ++   +           +    ++  GQNA VAV  + GY+
Sbjct: 571  KNRIDSLMYNLVYPQAPMVKSKTIE-----------LTNFDKVPAGQNATVAVMSYSGYD 619

Query: 789  QEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRR----SSDDMVNFGKIQSKIGR 844
             ED+L++N+AS++RG  R    ++ K  V     Q   R      D + N       I +
Sbjct: 620  IEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPVKDALTN-----KVIFK 674

Query: 845  VDSLDDDGFPFIGANLQSGDIVIGKYADSGADHS---------------IKLKHTERGMV 889
             D LD DG    G  +Q+  I+I K   +    +               I  K +E   V
Sbjct: 675  HDVLDTDGIVSPGEQVQNKQIMINKEMPAVTSINPLEGQSPQVPYTAVPISYKGSEPSYV 734

Query: 890  QKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPD 949
            ++V++S+N +      + LRQ R P +GDKFSS HGQKGV G +  QE+ PF   GI PD
Sbjct: 735  ERVMVSANAEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLIVDQEDMPFNDFGICPD 794

Query: 950  IVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAG 1009
            +++NPH FPSR T G+ LE   GK       G+  G   Y T F    V  I  +L R G
Sbjct: 795  MIMNPHGFPSRMTVGKTLELLGGKA------GVLEGKFHYGTAFGGSKVQDIQAELVRHG 848

Query: 1010 FSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRK 1069
            F+  G +  Y G TG  + + I+ GP +YQ+L HM +DK+  R  GP   LTRQP   R 
Sbjct: 849  FNYMGKDFFYSGITGAPLEAYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRS 908

Query: 1070 RFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKV 1129
            R GG++ GEMERDCLI++GA+  + ERL   SD++++ +CR C             GR  
Sbjct: 909  REGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRIC-------------GRLA 955

Query: 1130 RGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
               +C  C S   + K ++PY  KLL QEL SM +  K   E
Sbjct: 956  YCSWCHFCQSSAHVSKISMPYACKLLFQELTSMNVVPKLILE 997


>gi|353234760|emb|CCA66782.1| probable DNA-directed RNA polymerase III, 130 KD subunit
            [Piriformospora indica DSM 11827]
          Length = 1118

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 354/1184 (29%), Positives = 531/1184 (44%), Gaps = 154/1184 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+S+N F+   L+   ++     V    DP       + +  +R G  
Sbjct: 36   AFLKVKGLVKQHIDSFNYFVDYDLRAIMEA--NCKVTSDVDP----RFHFLFTDIRVGTP 89

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
              ++  F          + P   RL++ TYS+ + V +++ +   KR+            
Sbjct: 90   VSEQADF----ANQRQPITPHQCRLRDATYSAPLMVDIEY-IRDNKRI------------ 132

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG------DCDFDHGGYFIIKGAEKVF 205
                    +  +++IGRIP+M++S+ C + G  +       +C  D GGYF++KG EKV 
Sbjct: 133  --------QRKDVVIGRIPIMLRSNKCVLAGANESQLAVMNECPLDPGGYFVVKGTEKVI 184

Query: 206  VAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTE 265
            + QEQ+   R+ V      ++   S        ++      + +++ G  VL     S +
Sbjct: 185  LVQEQLSKNRIIVEIDSAKSIISASVTSSTHSGLK---SKTYVNMRKGLIVLKHNSFSED 241

Query: 266  IPIWILFFALGVSSDKEIVNLIDFTCEDC--SILNILFASIHDADNKCDEFRKGRNALKY 323
            IPI I   ALGV SDKEI+ L     E    +    L  S         + R+   A   
Sbjct: 242  IPIVIALKALGVQSDKEILLLCAGNTESYQEAFSPNLEESSRAGVYTIQQAREWLGARVR 301

Query: 324  VDKLIKGTTFPPGESTEECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRRKCD 379
              + + G   P  E   EC+   +   +         KA ++  M + +L A+   +  D
Sbjct: 302  SMRRMVGPRRPNWEEGLECLVMIVLTHVPVVNMDLSAKAIYVATMTRRVLMAHEDPKLVD 361

Query: 380  NRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDAS 435
            +RD   NKRLELAG+LL    E   K +++  +K   K L +              L  +
Sbjct: 362  DRDYVGNKRLELAGQLLALLFEDLFKAYVSELKKAFDKVLGKPARTSAFDPHTTMLLHGN 421

Query: 436  ILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDA 495
             +T G  RA STG WS    R ER +G+   L R + +  L  + R   Q + T KV   
Sbjct: 422  PITQGFIRAISTGNWSLKRFRMER-AGVTHVLSRLSYISALGMMTRISSQFEKTRKVSGP 480

Query: 496  RYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKLADDAS 554
            R   PS WG +C   TP+GE CGLVKNL +   ++T + E P+ + +   G+E +     
Sbjct: 481  RALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVEEKPLVKIITLLGVEDIQLSTG 540

Query: 555  YSLGG--KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMD 612
              + G   F V ++G  IG+ +    FV++ R+ RR   +   V I  +     V I  D
Sbjct: 541  SEIYGPTSFVVHLNGLIIGLTRFPSRFVAQFRKLRRAGRINEFVGIYINHHHKTVNIASD 600

Query: 613  AGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIK 666
             GRI RPL++VE M        I+ L+     F+  L  G++E V   EE D      I 
Sbjct: 601  GGRICRPLIIVERMQPKVTNEHIQMLKLGKLAFEDFLHQGLVEYVDVNEENDS----HIA 656

Query: 667  YLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTT 726
               KDIE       TH E++   +LG   G+IP+ +H+ + R  YQ      QAIG    
Sbjct: 657  LYEKDIEPST----THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQC-AMGKQAIGAIAY 711

Query: 727  NPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLG 786
            N   R+DTL + L YPQ+P+ +T   + +G             +L  GQNA VA+  + G
Sbjct: 712  NQLNRIDTLLYLLVYPQQPMVKTKTIELVGYD-----------KLPAGQNATVAIMSYSG 760

Query: 787  YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIG--- 843
            Y+ ED+L++NRAS+ERG  R +  R        K   + R+  +   +     SK+G   
Sbjct: 761  YDIEDALILNRASIERGYGRCQVFR--------KNTAIIRKYPNGTYDRLVAPSKVGTEE 812

Query: 844  ----RVDSLDDDGFPFIGANLQSGDIVIGKYADSGA---------------DHSIKLKHT 884
                R + LDDDG    G  +   D+ + K +                      +  K  
Sbjct: 813  KLPKRYEILDDDGLARPGERVDPDDVYVNKQSPKDTVTNSLTVNPAQVEYRPTPLTYKTK 872

Query: 885  ERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQ 944
              G + +V+++  D+ +    V +RQ R P LGDKFSS HGQKGV+G +  QE+ PF  Q
Sbjct: 873  VAGYIDRVMITDTDNDQALVKVLIRQTRIPELGDKFSSRHGQKGVVGLIVPQEDMPFNDQ 932

Query: 945  GIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQ 1004
            GI PD ++NPH FPSR T G+++E   GK       G+  G   Y T F    V+ +++ 
Sbjct: 933  GICPDSIMNPHGFPSRMTVGKMIELLAGKA------GVLRGTLEYGTAFGGSKVEDMSKI 986

Query: 1005 LHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQP 1064
            L   GFS  G + L  G TGE + +                         GP   LTRQP
Sbjct: 987  LIEHGFSYSGKDMLTSGITGEPLEA-------------------------GPRAILTRQP 1021

Query: 1065 VADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVG 1124
               R R GG++ GEMERDCL+ +GA   L ERL   SD +Q+H C+ C            
Sbjct: 1022 TEGRSRDGGLRLGEMERDCLVGYGATQLLLERLMISSDQFQVHACQTC------------ 1069

Query: 1125 GGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
             G      +C  C S   + +  +PY AKLL QEL SM +  + 
Sbjct: 1070 -GLMGYNGWCPYCKSSKKMAQLTIPYAAKLLFQELISMNVVPRL 1112


>gi|89274898|gb|ABD65890.1| RNA polymerase II second largest subunit, partial [Polyporus
            squamosus]
          Length = 898

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 303/874 (34%), Positives = 456/874 (52%), Gaps = 86/874 (9%)

Query: 258  SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG 317
            ++ ++  +IPIW++F ALGV SD++I+  I +  +D  +L +L   I +     D     
Sbjct: 52   TIPYIKVDIPIWVVFRALGVISDRDILEHICYDLQDNQMLEMLKPCIDEGFVIQDR---- 107

Query: 318  RNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSLH----GTKQKARFLGYMVKCL 368
              AL ++    +GTT            +E +   + P +        +KA F GYM+  L
Sbjct: 108  EIALDFIGN--RGTTIGLNRERRLRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHRL 165

Query: 369  LQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPI 428
            L A   RR  D+RD F  KRL+LAG LL    ++      K + + LQ+ +  ++    +
Sbjct: 166  LLAALERRDLDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRHLQKCVEMNKEFN-L 224

Query: 429  EYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQY 488
               +  + +TNGL  + +TG W    K     +G+   L R     TL  LRR    +  
Sbjct: 225  SLAVKHNTITNGLKYSLATGNWGDQKKSMSAKAGVSQVLNRYTYASTLSHLRRCNTPLGR 284

Query: 489  TGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGME 547
             GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  S+  P+ E L   G+E
Sbjct: 285  EGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVGSLSAPVIEFLEEWGLE 344

Query: 548  KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEV 607
             L ++   S     KVFV+G W+GV +D    V  LRR RR+ ++  +V + RD  + E+
Sbjct: 345  SLEENTHASTPCT-KVFVNGVWMGVHRDPAGLVRTLRRLRRKDDINCEVSVVRDIREREL 403

Query: 608  RIFMDAGRILRPLLVV------------ENMGKIKSLEGKNYTFQALLDHGIIELVGTEE 655
            R++ DAGR+ RPL +V            EN+ + K      Y +  ++  G+IEL+  EE
Sbjct: 404  RLYTDAGRVCRPLFIVEEQQLLVQKKHIENLVRSKEDPSYEYNWDNMIKEGVIELLDAEE 463

Query: 656  EED---CCT----------AWGI------KYLLKDIEDKKPI---KFTHCELDMSFLLGL 693
            EE    C T          A GI      +++      K P     +THCE+  S +LG+
Sbjct: 464  EETVMICMTPEDLENSRLQAAGIDPHADEEHVDPSARLKAPTFSHTWTHCEIHPSMILGV 523

Query: 694  SCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISD 753
               IIPF +H+ + R  YQS     QA+G   TN  +R+DT+++ L+YPQ+PL  T   +
Sbjct: 524  CASIIPFPDHNQSPRNTYQSAM-GKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSME 582

Query: 754  CLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSY 813
                        L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS + RSY
Sbjct: 583  -----------YLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRSY 631

Query: 814  KAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA-- 871
              +++ K    +    +       ++ K G  D L++DG    G N+   DI+IGK A  
Sbjct: 632  -MDLEKKSGIQQLEEFEKPTRETTLRMKHGTYDKLENDGLIAPGTNVNGEDIIIGKTAPI 690

Query: 872  -------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGD 918
                          +  D S  LK TE+G+V +V++++N +G+ F  + +R  R P +GD
Sbjct: 691  PPDSEELGQRTRTHTKRDVSTPLKSTEQGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGD 750

Query: 919  KFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAL 978
            KF+S HGQKG +G    QE+ PFT +GI PDI+INPHA PSR T G L+E  L K    +
Sbjct: 751  KFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKLATLI 810

Query: 979  GKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFY 1038
            G       +  ATPF   +V+ ++  L + G+   G E +Y G TG  +++ +++GPT+Y
Sbjct: 811  GN------EGDATPFTNLTVETVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYY 864

Query: 1039 QRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFG 1072
            QRL HM +DK+  R  GPV  LTRQPV  R R G
Sbjct: 865  QRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDG 898


>gi|348667429|gb|EGZ07254.1| hypothetical protein PHYSODRAFT_340380 [Phytophthora sojae]
          Length = 1158

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 355/1217 (29%), Positives = 574/1217 (47%), Gaps = 174/1217 (14%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
            F    GLV   I+S++ F    ++    +    +V    DP    +   +Y  ++ G  +
Sbjct: 30   FLQLRGLVKQHIDSFDYFTSVDMRNIVRAQANNVVRSDADP----KFFLQYTDIQLGAPS 85

Query: 93   LDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYI 152
            +D+ +F + +      + P   RL++ TY++ + V V+++    K VT++K         
Sbjct: 86   IDEEAFVSAS------VTPHQCRLRDRTYAAPVYVSVRYR-RGNKIVTNNK--------- 129

Query: 153  QKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG------DCDFDHGGYFIIKGAEKVFV 206
                       ++IGRIP+M++S  C + G  +       +C +D GGYFI++G EKV +
Sbjct: 130  -----------VLIGRIPIMLRSSRCVLAGKSEAALAKLKECPYDPGGYFIVRGVEKVVL 178

Query: 207  AQEQICLKRLWVSN----SMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFL 262
              EQ+   R+ +      ++  ++   +  +++R  + L           G   L     
Sbjct: 179  IHEQLSKNRVIIEEDGKRNVCASITSSTHERKSRTNIFL---------NKGRVYLKSNSF 229

Query: 263  STEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALK 322
             ++IPI I+F  +GV SD+EIV+L+    + C  ++  F    D      +    + AL+
Sbjct: 230  GSDIPIVIVFRGMGVESDQEIVSLVGSEPDICDAMSASFEEASDL-----KVFTQQQALE 284

Query: 323  YVDKLIKGTT-------------FPPGE------STEECMNTYLFPSL----HGTKQKAR 359
            Y+   +   T               P +      +    +   +   +       + K+ 
Sbjct: 285  YIGSKMNTLTKIGAMGGRNRGGAGRPQQDRNLVDAARSALANLVLNHVPCENFNFRLKSI 344

Query: 360  FLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQR-- 417
            ++ ++V+ +L     R + D++D + NKRLELAG+LL     +      KR    L+R  
Sbjct: 345  YVAHIVRRILFTDKDRTRLDDKDYYGNKRLELAGQLLS----LLFEDLFKRFNSDLKRQA 400

Query: 418  DLYGDRTVRP----IEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPL 473
            D+   +  R     I   +    +T G   A STG W+    R +R +G+   L R + +
Sbjct: 401  DMVLSKPNRASVFDIIKCVRTDTITQGFYHALSTGNWTLKRFRMDR-AGVTHVLSRLSYM 459

Query: 474  QTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI 533
              L  + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   V++  
Sbjct: 460  SALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLCHVTSDE 519

Query: 534  LE-PIFEQLFNSGME--KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRK 590
               PI    F+ G+    L+     +    + V ++G  IG   +  +FV+ LRR RR  
Sbjct: 520  EPGPIKRLCFDLGVTDVSLSSGEEINHASNYLVMLNGVIIGTHVNPRAFVTRLRRIRRAG 579

Query: 591  ELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYT--------FQAL 642
             +   V +   ++Q  V I  D GR+ RPLL+++ +     L  ++            +L
Sbjct: 580  LIGEFVSVMIHDVQRVVYIASDGGRVCRPLLLIDPVTHRTRLTQRHLDELRSGVRDLSSL 639

Query: 643  LDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFAN 702
            +  G +E V   EE +C        L+   E +   + TH E+D   +LG+  G+IP+ +
Sbjct: 640  IVEGCVEYVDVNEENNC--------LVTLHESEIGDRTTHLEIDPVTILGVVSGLIPYPH 691

Query: 703  HDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGH 762
            H+ + R  YQ      QAIG    N   R+DTL + + YPQ P+ +T + D         
Sbjct: 692  HNQSPRNTYQC-AMGKQAIGTIAMNQFERIDTLLYTMVYPQMPMVKTRVLD--------- 741

Query: 763  NHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEM 822
              ++    +  GQNAIVAV  + GY+ ED++V+N+ASL+RG  R    + Y+  +     
Sbjct: 742  --LVNFDRVPAGQNAIVAVMSYSGYDIEDAIVLNKASLDRGFGRCMVFKKYQTMIK---- 795

Query: 823  QVKRRSSDDMV---NFGKIQSKIG--------RVDSLDDDGFPFIGANLQSGDIVIGKYA 871
            +    S D +V   +F  + +  G        +  SLD DG   +G  +Q+G I+I K  
Sbjct: 796  KYANGSYDRIVGPPDFDSLAAPGGAGMGFRNAKYSSLDADGISRVGGIVQNGAIMINKEQ 855

Query: 872  DSGADHSIKLKH-----------TERG----MVQKVVLSSNDDGKNFSVVSLRQVRSPCL 916
             +  + S+  +            T +G     V KV+L+S++       V +RQ R P +
Sbjct: 856  PTQFNDSVDGRDPLDVTYSPSPTTYKGPIPAYVDKVLLTSSEANHFLVKVLIRQTRRPEI 915

Query: 917  GDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIA 976
            GDKFSS HGQKGV G +  QE+ PF  QGI PD+++NPH FPSR T G+++E   GK   
Sbjct: 916  GDKFSSRHGQKGVCGTIRQQEDMPFNDQGICPDLIMNPHGFPSRMTVGKMIELIAGKA-- 973

Query: 977  ALGKGICSGLKRYATPFATP--SVDAI---TEQLHRAGFSKWGTERLYDGRTGEMVRSLI 1031
                G+ +G + Y T F     S D +   + +L + GF+  G + L  G TGE +   I
Sbjct: 974  ----GVLTGRRAYGTAFGEKYGSADHVLDCSRELVKNGFNYAGKDYLTSGITGEPIECYI 1029

Query: 1032 FIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAA 1091
            F+GP +YQ+L HM  DK+  R  GP   LTRQP   R R GG++ GEMERDCLI +GA+ 
Sbjct: 1030 FMGPIYYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASM 1089

Query: 1092 NLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYG 1151
             L ERL   SD++   +C+ C        R++G        +C+ C S + +V   +PY 
Sbjct: 1090 LLMERLMLSSDAFSADVCQGC--------RMLG-----YEGWCQHCKSEEKVVSIRIPYA 1136

Query: 1152 AKLLCQELFSMGITLKF 1168
             KLL QEL +M I  + 
Sbjct: 1137 CKLLFQELQAMNIVPRL 1153


>gi|189194954|ref|XP_001933815.1| DNA-directed RNA polymerase III subunit RPC2 [Pyrenophora
            tritici-repentis Pt-1C-BFP]
 gi|187979694|gb|EDU46320.1| DNA-directed RNA polymerase III subunit RPC2 [Pyrenophora
            tritici-repentis Pt-1C-BFP]
          Length = 1167

 Score =  461 bits (1186), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 355/1197 (29%), Positives = 550/1197 (45%), Gaps = 195/1197 (16%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   ++SYN F+   L+K         V   +DP    E    Y  +R    
Sbjct: 106  AFLKTKGLVKQHVDSYNHFVDVELKKIIKV--NRFVRSDFDPKFLLE----YTDIRV--- 156

Query: 92   TLDKPSFFAGNGGDEHDM-------FPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKF 144
                    A N  +E D+        P   RL++MTY++ + V +   +YT+      + 
Sbjct: 157  -------LAPNRQEEDDLDHHKSTVTPNECRLRDMTYAAPIVVDI---IYTRGNAKVKR- 205

Query: 145  KTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFII 198
                             T I IGR+P+M+KS+ C + G         G+C  D GGYFI 
Sbjct: 206  -----------------TGIKIGRMPIMLKSNKCVLAGKNDNDMAVMGECPLDPGGYFIT 248

Query: 199  KGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLS 258
            +G EKV + QEQ+   R+ V ++ G   A  + +   R     V   K      G   L 
Sbjct: 249  RGQEKVILVQEQLNKNRVIVESAKGIMQASVTSSTHERRTKTYVIQKK------GLMYLR 302

Query: 259  VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGR 318
               LS EIPI  +  ALGV+SDKEI+ ++    ED +  +  F+   +A  K + F + R
Sbjct: 303  HNTLSEEIPIVFVMKALGVASDKEILTMV--AGEDSAYQDN-FSINFEACAKEEIFTQER 359

Query: 319  NALKYVDKLIKGTTFPPGESTE--------ECMNTYLFP--SLHGT--KQKARFLGYMVK 366
             AL+Y+   ++    P G S          EC++  + P   + GT  + KA ++  M +
Sbjct: 360  -ALEYIGHRVRLVKKPLGTSRNRNYHLEAIECLSNVVLPHVPVEGTNYRPKALYVALMAR 418

Query: 367  CLLQAYSGRRKCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKRMAKAL 415
             +L A    +  D+RD   NKRLEL+G++L             + K+ I    K+  +A 
Sbjct: 419  RVLMAMQNPKLVDDRDYVGNKRLELSGQMLSLLFEDHFKRFNHDFKLSIDKVLKKPVRAQ 478

Query: 416  QRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQT 475
            + D +         + +  + +T G+ RA +TG WS    + +R +G+   L R + +  
Sbjct: 479  EFDAFS-------HFSVHKNHITMGVERAIATGNWSLKRFKMDR-AGVTHVLSRLSYIAA 530

Query: 476  LVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLVSTSIL 534
            L  + R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL + T + +    
Sbjct: 531  LGMMTRISSQFEKTRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTEDDD 590

Query: 535  EPIFEQLFNSGMEKLADDASYSLG--GKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL 592
            +P+ + +F  G + +       +   G + + ++G  I V      F++  R  RR   +
Sbjct: 591  DPVRKIVFMLGAQDICSLTGEDIHAEGVYSLCLNGTPIAVTDRPKHFLNSFRGLRRMGRV 650

Query: 593  PTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHG 646
                 I  D    EV I  D GRI RP+++VEN         +K+L      F+  L  G
Sbjct: 651  SEFTSIHIDHDHCEVHIATDEGRICRPMIIVENQRSKVTSRYLKALRKGTLDFEDFLTRG 710

Query: 647  IIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHA 706
            ++E + T EE D   A      LK+ +  +    TH E++   +LG   G+IP+ +H+ +
Sbjct: 711  LVEYLDTNEENDTNIA------LKETDINQ--HTTHLEIEPFTILGAVAGLIPYPHHNQS 762

Query: 707  RRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHIL 766
             R  YQ                   +DTL + + YPQ+P+ +T   +           + 
Sbjct: 763  PRNTYQCA-----------------MDTLLYLMVYPQQPMVKTRTIE-----------LT 794

Query: 767  PRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKR 826
               +L  GQNA VAV  + GY+ ED+L++N+AS +RG  R + ++ +  +     ++   
Sbjct: 795  KYDKLPAGQNATVAVMSYSGYDIEDALILNKASCDRGFGRCQVMKKHVTQ-----LKTYA 849

Query: 827  RSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVI---------GKYADSGADH 877
              + D +N G +        ++  DG   +GA +++GD  +         G  +++  D 
Sbjct: 850  NGTSDRINAGALDPDNKNHQAIGKDGIAQVGARIEAGDAYLLKSIPVDTAGPPSNTYKDK 909

Query: 878  SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQE 937
              K K+ +   + K  ++ N+ G     +  RQ R P LGDKFSS HGQKG  G +  QE
Sbjct: 910  PEKYKNPDYSYIDKTCVTENEAGVTLIKLLFRQTRRPELGDKFSSRHGQKGTTGLIVQQE 969

Query: 938  NFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPS 997
            + PF  QGI PDI++NPH FPSR T G+++E   GK       G+ +G   Y T F   +
Sbjct: 970  DMPFNDQGICPDIIMNPHGFPSRMTVGKMMELLSGKA------GVLNGTLEYGTAFGGST 1023

Query: 998  VDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPV 1057
            V+ +++ L   GFS  G + L  G TGE  +   F GP +YQ+L HM +DK+  R  GP 
Sbjct: 1024 VEDMSKILVDKGFSYTGKDYLTSGITGEAHQFYTFFGPIYYQKLKHMVQDKMHSRARGPR 1083

Query: 1058 HPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVAN 1117
              LTRQP   R R GG++ GEMERDCLIA+                              
Sbjct: 1084 AILTRQPTEGRARDGGLRLGEMERDCLIAY------------------------------ 1113

Query: 1118 VIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI--TLKFDTEF 1172
                   GG+     YC++C+S   + K  +PY AKLL QEL SM I  T+  + EF
Sbjct: 1114 -------GGQMGYSGYCKLCESEKAVRKITMPYAAKLLIQELGSMNIKVTIGLEDEF 1163


>gi|198423468|ref|XP_002121670.1| PREDICTED: similar to polymerase (RNA) III (DNA directed) polypeptide
            B [Ciona intestinalis]
          Length = 1141

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 353/1191 (29%), Positives = 556/1191 (46%), Gaps = 153/1191 (12%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
            F    GLV   I+S+N F+   ++    +    + +   DP+   E    Y  +  G   
Sbjct: 34   FLKVKGLVKQHIDSFNYFVNVDIKNIVKANKRVLSDA--DPNWYLE----YLDIHVGVPD 87

Query: 93   LDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYI 152
            +++ SF          + P   RL++MTYS+ + V +++               G+++ I
Sbjct: 88   VEE-SFNVTRA-----VTPHECRLRDMTYSASITVDIEY-------------TRGQQRII 128

Query: 153  QKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFV 206
            +K         + IGR+P+M++S  C + G       +  +C +D GGYF+ KG EKV +
Sbjct: 129  RKA--------LPIGRMPIMLRSSNCVLTGKNGVELAKMNECPYDPGGYFVCKGVEKVIL 180

Query: 207  AQEQICLKRLWVSNS----MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFL 262
             QEQ+   R+ V          +V   +  K+ R+ V           K G   L    L
Sbjct: 181  IQEQMSKNRMIVERDRKGFCSCSVHSSTHEKKTRVNVLQ---------KKGHFYLQQNAL 231

Query: 263  STEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALK 322
            + ++PI ++F A+GV S++ I+ LI     + +++++   S+ D  +K + F +   A K
Sbjct: 232  NEDMPICVIFKAMGVESEQSIMQLIG---TEENVMSMFSPSLEDC-HKLEVFTQ-LQASK 286

Query: 323  YVDKLIK-------GTTFPPGESTEECMNTYLFPSLHGT----KQKARFLGYMVKCLLQA 371
            Y+   I+              + T + +NT L   +  T      KA +L  M++ ++  
Sbjct: 287  YISGKIRRQRPVWGAARQSKTDETRDWLNTTLLAHIPVTDWNYHAKAVYLALMIRRIILT 346

Query: 372  YSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR-PIEY 430
              G  + D+RD + NKR+ELAG L+    +         + K     +   R  +  +  
Sbjct: 347  QLGYLEVDDRDYYGNKRMELAGGLISLLFEDLFKRFNSELKKIADLTIPKPRAAQFDVVR 406

Query: 431  YLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTG 490
            ++   ++T  L  A S+G W     + ER  G+   L R + +  L  + R   Q + T 
Sbjct: 407  HMRQDLITTSLVIAISSGNWIVKRFKMER-KGVTQVLTRLSYISALGMMTRIASQFEKTR 465

Query: 491  KVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-LEPIFEQLFNSGMEKL 549
            KV   R   PS WG +C   TP+GE CGLVKNL +   ++  +  EP    LFN G+E +
Sbjct: 466  KVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITVDVEEEPTARLLFNLGVEDV 525

Query: 550  ADDASYSLGGK-------FKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
                 Y L G+       + VF++G  +GV +D +  V+ LR  RR   L   + +  + 
Sbjct: 526  -----YMLSGEEIHSQLSYIVFLNGLVLGVVRDPVHLVTTLRLMRRHGYLNDFISVSTNR 580

Query: 603  LQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGIIELVGTEE 655
                V +  D GR+ RP ++V   GK       I+ L+    +F+  L  G++E +   E
Sbjct: 581  AHRTVYVSSDGGRLCRPYIIVSK-GKPLVTSHHIEELKRGLRSFEDFLRSGLVEYLDVSE 639

Query: 656  EEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQK 715
            E DC  A    Y+          K TH E++   LLG+  G+IP+ +H+ + R  YQ   
Sbjct: 640  ENDCFVALDESYITH--------KSTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-A 690

Query: 716  HSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQ 775
               QA+G    N   R+DTL + L YPQ PL ++   +           ++   +L  GQ
Sbjct: 691  MGKQAMGTIGYNQQQRIDTLMYLLVYPQAPLVKSRTIE-----------LINFEKLPAGQ 739

Query: 776  NAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF 835
            NAI+AV  + GY+ ED+LV+NRAS++RG  R    R+ K  +     Q   +     +N 
Sbjct: 740  NAIIAVMSYSGYDIEDALVLNRASVDRGYGRCLVYRNQKCILKRYANQTFDKVMGPALN- 798

Query: 836  GKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKY----------------------ADS 873
             + +  I R   LD DG    G  ++S   ++                         + S
Sbjct: 799  AETREPIWRHQGLDADGIIMPGVKVESKQKIMCXLYXXXXXXXXXXXXXXXXXLQGPSTS 858

Query: 874  GADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
              +  I  +      ++KV++SSN++  +   + LRQ R P LGDKFSS HGQKGV G +
Sbjct: 859  YQETPISYRGPVGSTIEKVMVSSNNEESSLIKILLRQTRRPELGDKFSSRHGQKGVTGLI 918

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
              Q + PF   GI PD+++NPH +PSR T G+L+E  LG    A+G     G   Y T F
Sbjct: 919  VQQADMPFNQDGICPDVIMNPHGYPSRMTVGKLME-LLGSKAGAIG-----GKFHYGTAF 972

Query: 994  ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
                V+ +++ L   G++  G + L  G TGE   + I+ GP +YQ+L HM  DK+  R 
Sbjct: 973  GGDKVEDLSQVLTDNGYNYVGKDCLTSGITGESFEAYIYQGPVYYQKLKHMVLDKMHARA 1032

Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
             GP   LTRQP   R   GG++ GEMERDCLI +GA+  L ERL   SD +++ +C KC 
Sbjct: 1033 RGPRAVLTRQPTEGRSHDGGLRLGEMERDCLIGYGASMLLLERLMISSDQFEVDVCGKC- 1091

Query: 1114 NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
                        G      +C+ C S  ++    +PY  KLL QEL SM I
Sbjct: 1092 ------------GLLGYDGWCQFCKSSKNVATLKIPYACKLLFQELTSMNI 1130


>gi|323447819|gb|EGB03728.1| hypothetical protein AURANDRAFT_39265 [Aureococcus anophagefferens]
          Length = 1222

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 358/1236 (28%), Positives = 572/1236 (46%), Gaps = 181/1236 (14%)

Query: 39   LVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSF 98
            L++  I S++ FI+  ++K   +     V    DP+        Y  +  G  ++++ +F
Sbjct: 28   LMNQHIASFDYFIETEIKKVVAAEPNHTVRSEVDPNFY----LSYTDVYVGVPSIEEDAF 83

Query: 99   FAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQF----QVYTQKRVTSDKFKTGREQYIQK 154
             +          P   RL++ TYS+ + V V++    Q+ T KRV               
Sbjct: 84   TSTAAT------PFECRLRDCTYSAPIFVDVRYRRGPQIVTTKRVP-------------- 123

Query: 155  EVLSDETTNIIIGRIPVMVKSDLC------WMKGVEKGDCDFDHGGYFIIKGAEKVFVAQ 208
                       IGRIP+M++S  C      W +     +C  D GGYF++KG EKV + Q
Sbjct: 124  -----------IGRIPIMLRSSQCVLHNKSWSQLEALKECPHDPGGYFVVKGVEKVILMQ 172

Query: 209  EQICLKRLWVS-NSMGW---TVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLST 264
            EQ+   R+ +  ++ G+   T+   +  +++R  + +   +      G    L    L  
Sbjct: 173  EQLSKNRMIIELDAKGFVCATITSSTHERKSRCSIVVKPTTH-----GHRVYLKHNTLGD 227

Query: 265  EIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYV 324
            +IP+ ++  A+G+ SD+EI  L+  +  D  I +I   S+ +        +  + AL+YV
Sbjct: 228  DIPVVVILKAMGMESDQEIAELV--SSADLKIADIFVNSMEEP--CAAHVKTQKQALEYV 283

Query: 325  DKLIKGTTFPPGESTEECMNTYLFPSLHGTK-------------------------QKAR 359
             + I+       +S +   + YL  S                               K  
Sbjct: 284  GQAIRAKQ--KAQSVDGSRSQYLPHSRRPVSIEDEAREVLAHVVLSHVPVEDYDFVAKRT 341

Query: 360  FLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKAL 415
            ++G++ + +L A       D++D + NKRLELAG+LL    E   K   A  ++     L
Sbjct: 342  YIGHVTRRVLAASLDNSLLDDKDYYGNKRLELAGQLLSLLFEDLFKRFNADLKRSADLVL 401

Query: 416  QRDLYGDRT-----VRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRA 470
            Q+    +RT     V+   +  D   ++ G   A STG W     + +R +G+   L R 
Sbjct: 402  QKQ---NRTAVFDIVKSTVWRTDT--ISQGFVHAISTGNWVLKRFKMDR-AGVTQVLSRL 455

Query: 471  NPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVS 530
            + +  +  + R   Q + T K    R    S WG +C   TP+GE CGLVKNL +   V+
Sbjct: 456  SYVSAIGMMTRVNSQFEKTRKTSGPRALQLSQWGMLCPADTPEGETCGLVKNLALLAHVT 515

Query: 531  TSI-LEPIFEQLFNSGMEKLADDASYSLG---GKFKVFVDGDWIGVCKDSLSFVSELRRK 586
            T   +E      F+ G+E+L       L    G + VF++G  IG C+        LR  
Sbjct: 516  TDAEVEKTKRSCFDLGVEQLGYLNGAELNSHPGAYLVFLNGLVIGACRRPHKLARGLRCM 575

Query: 587  RRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNY--- 637
            RR K +   V +    +   + +  D GR+ RPL++  +        ++ +   K Y   
Sbjct: 576  RRSKRIGEFVSVYTHTVHRAIYVACDGGRVCRPLIIATHGHSRLTAAQLATAFAKTYPNS 635

Query: 638  -----------------TFQAL--LDH----GIIELVGTEEEEDCCTAWGIKYLLKDIED 674
                             + Q++  LDH    GIIE V   EE +C       ++  D  +
Sbjct: 636  NSQSKNDGDPNRLQSHASTQSVGTLDHLTTVGIIEYVDVNEENNC-------FIALDERE 688

Query: 675  KKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDT 734
              P + TH E+D   +LG+  G++ F +H+ + R  YQ      QA+G   TN   R+D+
Sbjct: 689  LTP-RHTHVEIDPVTILGIVSGLVAFPHHNQSPRNTYQCAM-GKQAMGSVATNQYERMDS 746

Query: 735  LSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLV 794
            L + L YPQ+P+ ++ + D +      H   LP      G NA +AV  + GY+ ED++V
Sbjct: 747  LLYSLVYPQKPMVKSRVLDLV------HFDALP-----GGCNATLAVMSYSGYDIEDAIV 795

Query: 795  MNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFP 854
            +NRASL+RG  R   I+ ++  +         R++        +Q  + R  +LD+DG  
Sbjct: 796  LNRASLDRGFMRCLVIKRHQVSIRRYANGACDRTTGPPSIELFLQGYVFRYSALDNDGIC 855

Query: 855  FIGANLQSGDIVIGKY-----------ADSGADHSIKLKHTER---GMVQKVVLSSNDDG 900
             +G  L    I+I +            A  G   +  + H +     +V +V+L++N+  
Sbjct: 856  RVGEKLHDQSIMINREMPVEDRDELTPALPGRVSAFVVLHYKSPAPSVVDRVLLTANETD 915

Query: 901  KNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSR 960
            +    V +RQ R P +GDKF+S HGQKGV G + SQE+ PF+  G+ PD+++NPH FPSR
Sbjct: 916  QFLVKVMVRQCRRPEVGDKFASRHGQKGVCGAIVSQEDMPFSDTGVCPDVIMNPHGFPSR 975

Query: 961  QTPGQLLEAALGKGIAALGKGICSGLKRYATPFA--TPSVDAITE---QLHRAGFSKWGT 1015
             T G+++E   GK       G+CSG + Y T F   T S D  +E    L + GFS  G 
Sbjct: 976  MTVGKIIELVAGKC------GVCSGRQAYGTAFGEKTGSADCASEASCTLLKHGFSYIGK 1029

Query: 1016 ERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIK 1075
            + LY G +GE +R  +F+GP FYQ+L HM  DK+  R  GP   LTRQP   R R GG++
Sbjct: 1030 DMLYSGISGEPLRVYVFMGPVFYQKLKHMVMDKMHARARGPRAQLTRQPTEGRSRDGGLR 1089

Query: 1076 FGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCR 1135
             GEMERDCLI++GAA  + ERL   SD + +H+C  C  +     +           +C+
Sbjct: 1090 LGEMERDCLISYGAANLITERLMISSDQFDVHVCEGCGLLGYSTAQNTERIDSTFTSWCQ 1149

Query: 1136 ICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
             C S + + +  +PY  KLL QEL SM +T +   E
Sbjct: 1150 NCRSNEQMARICIPYACKLLFQELQSMNVTPRLKLE 1185


>gi|67810650|gb|AAY82001.1| RNA polymerase II second largest subunit [Sphagnum sp. JL-2005]
          Length = 704

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 258/644 (40%), Positives = 370/644 (57%), Gaps = 53/644 (8%)

Query: 503  WGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKF 561
            WG +C   TP+G+ CGLVKNL +   ++  S + PI E L     E   + +   +    
Sbjct: 1    WGMMCPAETPEGQACGLVKNLALMAYITVGSAVNPILEFLEEWSTENFEEISPAVIPNST 60

Query: 562  KVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLL 621
            K+FV+G W+G+ +D    V  LR+ RR+ ++ T+V + RD    E+R++ D GR  RPL 
Sbjct: 61   KIFVNGSWVGIHRDPELLVRTLRQLRRQVDVNTEVGVVRDIRLKELRLYTDYGRCSRPLF 120

Query: 622  VVENM------GKIKSLEGKNYT---FQALLDHGIIELVGTEEEEDCCTAWGIKYLLK-- 670
            +VE          +++L+ K  T   +  L+  G IE V TEEEE    +  I  L+   
Sbjct: 121  IVEKQRLLIKKSDVRALQQKEATESGWYDLVSKGFIEYVDTEEEETTMISMTIADLVNAR 180

Query: 671  -DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPS 729
             + E    + +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN  
Sbjct: 181  NNPEASFSVTYTHCEIHPSMILGVCGSIIPFPDHNQSPRNTYQSAM-GKQAMGIYVTNYQ 239

Query: 730  IRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQ 789
            +R+DTL++ L+YPQ+PL  T   + L      H   LP      G NA+VA+  + GYNQ
Sbjct: 240  LRMDTLAYVLYYPQKPLVTTRAMEHL------HFRQLP-----AGINAVVAIACYSGYNQ 288

Query: 790  EDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVK----RRSSDDMVNFGKIQSKIGRV 845
            EDS++MN++S++RG FRS   RSY+ E   +   +K    R + ++         + G  
Sbjct: 289  EDSVIMNQSSIDRGFFRSIFYRSYRDEEKRQGTLIKEEFERPNRENTTGM-----RHGSY 343

Query: 846  DSLDDDGFPFIGANLQSGDIVIGKYA----DSGA---------DHSIKLKHTERGMVQKV 892
            D LDDDG    G  +   D++IGK      D  A         D S  L+H+E GM+ +V
Sbjct: 344  DELDDDGLAPPGTRVSGEDVIIGKTTPLPQDDNASQAQRYTKRDQSTCLRHSESGMIDQV 403

Query: 893  VLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVI 952
            +L++N DG  F  + +R +R P +GDKFSS HGQK  +G   +QE+ P+T +GI PDI++
Sbjct: 404  LLTTNADGLRFVKIRVRSIRIPQIGDKFSSRHGQKCTVGMTYTQEDMPWTQEGITPDIIV 463

Query: 953  NPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSK 1012
            NPHA PSR T GQL+E  +GK  A +GK      +  ATPF   +VD I++ LH+ G+  
Sbjct: 464  NPHAIPSRMTIGQLIECIMGKVAAHMGK------EGDATPFTDATVDNISKALHKCGYQM 517

Query: 1013 WGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFG 1072
             G E +Y+G TG  + + IF+GPT+YQRL HM +DK+  R  GPV  LTRQP   R R G
Sbjct: 518  RGFEVMYNGHTGRRLSAHIFLGPTYYQRLKHMMDDKIHSRGRGPVQILTRQPAEGRSRVG 577

Query: 1073 GIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVA 1116
            G++FGEMERDC+IAHGAA  L ERLF  SD+Y++H+C  C  +A
Sbjct: 578  GLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEHCGLIA 621


>gi|158297007|ref|XP_317312.4| AGAP008151-PA [Anopheles gambiae str. PEST]
 gi|157014987|gb|EAA12689.4| AGAP008151-PA [Anopheles gambiae str. PEST]
          Length = 1089

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 354/1164 (30%), Positives = 546/1164 (46%), Gaps = 152/1164 (13%)

Query: 42   HQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAG 101
              I+S+N FI   ++K   +  E  V+   DP            +++  V + KP    G
Sbjct: 36   QHIDSFNYFINVDIKKIVQANQE--VKSDADPC---------FYLKYLNVHVGKPDVEEG 84

Query: 102  NGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDET 161
               +     P   RL++MTYS+ + V +++   TQ+ V +                    
Sbjct: 85   -FNNTKSTTPHECRLRDMTYSAPITVDIEYTRGTQRVVRN-------------------- 123

Query: 162  TNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKR 215
              ++IGR+P+M++S  C + G       +  +C  D GGYFII+G EKV + QEQ+   +
Sbjct: 124  -GLLIGRMPIMLRSSNCVLTGKSDYQLSKVNECPMDPGGYFIIRGTEKVILIQEQLSWNK 182

Query: 216  LWVSNSMG---WTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILF 272
            +   +  G     V   +  K++R I+           K G   L    ++ EIP+ I+ 
Sbjct: 183  MITEDYNGVIQCQVTSSTHEKKSRTILL---------TKHGRYYLKHNSMTEEIPVAIIL 233

Query: 273  FALGVSSDKEIVNL--IDFTCEDCSILNILFASIHD--ADNKCDEFRKGRNALKYVDKLI 328
             A+G++SD+EI+ L  ID   +     ++L A+ H      +  E+   +   K      
Sbjct: 234  KAMGIASDQEIMQLVGIDPETQKRFAPSLLEAANHKVFTQQRALEYMGSKLIAKRFTTAA 293

Query: 329  KGTTFPPGESTEECMNTYL----FPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDF 384
                    E+ +    T L     PS +  + KA ++  M++ ++ A   R   D+RD +
Sbjct: 294  TKYKTTADEARDLLATTILAHVPVPSFN-FQVKAIYVALMIRRVMAAELDRSAVDDRDYY 352

Query: 385  RNKRLELAGELLER-----------ELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLD 433
             NKRLELAG LL             ELK+ IA       KA Q D         +  ++ 
Sbjct: 353  GNKRLELAGSLLSLMFEDLFKRFNWELKM-IADKNIPKIKAAQFD---------VGKHMR 402

Query: 434  ASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVG 493
             +++T GL  A STG W+    + ER +G+   L R + +  L  + R   Q + T KV 
Sbjct: 403  EALITAGLETAISTGNWTIKRFKMER-AGVTQVLSRLSYISALGMMTRVNSQFEKTRKVS 461

Query: 494  DARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-LEPIFEQLFNSGME--KLA 550
              R   PS WG +C   TP+GE CGLVKNL +   ++T +  EP+    +N+G+E  +L 
Sbjct: 462  GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVDEEPVIRLAYNAGVEDIRLL 521

Query: 551  DDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIF 610
               + +    F VF++G+ +GV       V   R  RRR  +   V I     Q  V I 
Sbjct: 522  GGETINNPKVFMVFINGNILGVTIAYRRLVEVFRMMRRRGLIGAFVSIHTSFTQRCVYIH 581

Query: 611  MDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLK 670
             D GR+ RP ++V+  G+   L+                     EE D   A    Y  +
Sbjct: 582  TDGGRLCRPYIIVQ-AGRPLYLD-------------------VNEENDSFIA----YQER 617

Query: 671  DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSI 730
            DI+   P K TH E++   LLG+  G++P+ +H+ + R  YQ      QA+G    N   
Sbjct: 618  DID---PEKTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQC-AMGKQAMGIIGYNQKN 673

Query: 731  RVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQE 790
            R+DTL + + YPQ P+ R+   +           +    +L  GQNA VAV  + GY+ E
Sbjct: 674  RIDTLMYNIVYPQSPMVRSRTIE-----------LTNFDKLPAGQNATVAVMSYSGYDIE 722

Query: 791  DSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVN--FGKIQSKIGRVDSL 848
            D+L++N+AS++RG  R    ++ K  +     Q   R    M +   GKI   I + + L
Sbjct: 723  DALILNKASIDRGYGRCLVYKNSKCTIKRYSNQTFDRIMGPMKDGVTGKI---IAKHECL 779

Query: 849  DDDGFPFIGANLQSGDIVIGKYADS-GADHSIKLKHTERGMVQ---KVVLSSNDDGKNFS 904
            D DG    G  L     ++ K   +  +++ I+ K + +  +    +V++S+N++ +   
Sbjct: 780  DTDGIVSPGERLTCKQTMVNKEMPAVKSNNPIEQKESGQQPIAYSARVLVSTNNEEEFLV 839

Query: 905  VVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPG 964
             + LRQ R P +GDKFSS HGQKGV G +  QE+ PF   G+ PD+V+NPH FPSR T G
Sbjct: 840  KILLRQTRRPEIGDKFSSRHGQKGVTGLIVEQEDLPFNDYGMSPDMVMNPHGFPSRMTVG 899

Query: 965  QLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTG 1024
            + LE    K       G+  G   Y T F       + ++L   GF+  G +  Y G TG
Sbjct: 900  KTLELLGSKA------GVLEGKFHYGTAFGGSKCSDLQDELFNHGFNYLGKDVFYSGITG 953

Query: 1025 EMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL 1084
            E +   I+ GP +YQ+L HM +DK+  R  GP   LTRQP   R R GG++ GEMERDCL
Sbjct: 954  EPLEVYIYSGPVYYQKLKHMVQDKMHARARGPRAVLTRQPTQGRSREGGLRLGEMERDCL 1013

Query: 1085 IAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIV 1144
            I++GA+  + ERL   SD++ + +C  C             GR     +C  C S   + 
Sbjct: 1014 ISYGASMLIMERLMISSDAFDVDVCNVC-------------GRLAYSSWCHNCRSSASVS 1060

Query: 1145 KANVPYGAKLLCQELFSMGITLKF 1168
              ++PY  KLL QEL SM I  + 
Sbjct: 1061 TISMPYACKLLFQELTSMNIVPRL 1084


>gi|120561247|gb|ABM27008.1| RNA polymerase II second largest subunit, partial [Furculomyces
            boomerangus]
          Length = 906

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 305/936 (32%), Positives = 481/936 (51%), Gaps = 103/936 (11%)

Query: 202  EKVFVAQEQICLKRLWV---------SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKG 252
            EKV +AQE+I    ++V           +   + A K+  + + L +++ +    + + G
Sbjct: 2    EKVMIAQERIATNTVFVFKKNIPYPHYTAEIRSAAEKASKQASPLFLKITNKGVSKGL-G 60

Query: 253  GEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD 312
            GE   S+ ++ ++IP+ ++F ALG+ + K+I+  I +   D  +L     SI +A    D
Sbjct: 61   GEIQASIPYIRSDIPVVVVFRALGMVAVKDILEHICYDGNDHQMLEKFKPSIEEAFVIQD 120

Query: 313  EFRKGRNALKYVDKLIKGTTFPPGESTE-----ECMNTYLFPSL----HGTKQKARFLGY 363
            +      AL ++ K  +GT     +        E +     P +    H   +K+ F GY
Sbjct: 121  K----DVALDFIGK--RGTAVGVSKDKRIKYGAEILQKEFLPHVGTQAHNETRKSFFFGY 174

Query: 364  MVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDR 423
            MV  LL     RR+ D+RD +  KR++LAG LL    +       K M + LQ+ +   R
Sbjct: 175  MVHRLLLCALERREQDDRDHYGKKRMDLAGPLLAMLFRNLFRKVTKDMTRYLQKCIDSKR 234

Query: 424  TVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTR 483
                +   + ++ +T GL  + +TG W    K  +  +G+   L R     TL  LRR  
Sbjct: 235  EFN-LTMAIKSNTITAGLKYSLATGNWGDQKKSMQSRTGVSQVLNRYTFASTLSHLRRCN 293

Query: 484  QQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLF 542
              +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   ++      P+   L 
Sbjct: 294  TPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMAHITIGAESGPLLLFLE 353

Query: 543  NSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
               ME L +  + ++    K+FV+G W+G+ +D+   VS L + RRR +L  ++ I RD 
Sbjct: 354  EWAMENLEELTASNIPDATKIFVNGVWVGIHRDANRLVSTLLQMRRRLDLSYELSIVRDV 413

Query: 603  LQSEVRIFMDAGRILRPLLVVENM------GKIKSLEGKNYT------FQALLDHGIIEL 650
             + E+R+F DAGR+ RPL VV N+        ++++E ++        +  L+  GI+E 
Sbjct: 414  REKELRLFTDAGRVSRPLFVVNNLRLNLTKDIVRAIEARDVNDPEAVRWHDLMVEGIVEY 473

Query: 651  VGTEEEED---CCTAWGIKY----------------LLKDIEDKKPIK---FTHCELDMS 688
            +  EEEE    C T+  +K                 L   I  ++ ++   +THCE+  S
Sbjct: 474  LDAEEEETAMICMTSAELKESRMFHEHGIEPQAEDDLASRIRSRRNVQIHTWTHCEIHPS 533

Query: 689  FLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFR 748
             +LG+   I+PF +H+ + R  YQS     QA+G   T+  +R+DTLS+ L+YPQ+PL  
Sbjct: 534  MILGICASIVPFPDHNQSPRNTYQSAM-GKQAMGIMLTSYQLRMDTLSNILYYPQKPLAT 592

Query: 749  TMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSE 808
            T   +            +   +L  GQNA+VA+  + GYNQEDS++MN++S++RG+FRS 
Sbjct: 593  THSME-----------YIKFSDLPAGQNAVVAILCYSGYNQEDSVIMNQSSIDRGLFRSM 641

Query: 809  HIRSYKAEVDNKEMQV----KRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGD 864
              R+Y+ E D + M+     +R + +  +       K G  + L+DDG    G  +   D
Sbjct: 642  FYRTYQDEEDRQGMKTMGTFERPTRETTLRL-----KHGTYEKLEDDGLIAPGTRVTGDD 696

Query: 865  IVIGK---------------YADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLR 909
            I+IGK                  +  D S  L+ TE G+V +V+L++N DG  F  V +R
Sbjct: 697  IIIGKTTPIPIDSIELGQRTVTHTKLDASKPLRSTETGIVDQVMLTTNGDGFKFVKVRVR 756

Query: 910  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEA 969
              R P +GDKF+S HGQKG +G     E+ PFT +G+VPD++INPHA PSR T G L+E 
Sbjct: 757  STRVPQIGDKFASRHGQKGTIGITYRTEDMPFTSEGVVPDLIINPHAIPSRMTIGHLVEC 816

Query: 970  ALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRS 1029
             L K +A L      G    ATPF   +V+AI+ +L   G+   G E +Y+G TG  +++
Sbjct: 817  LLSK-LATL-----IGTTADATPFTDVTVEAISRELFSLGYQSRGFEVMYNGHTGRKLQA 870

Query: 1030 LIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPV 1065
             +F+GPT+YQRL HM +DK+  R  GPV  LT QPV
Sbjct: 871  QVFLGPTYYQRLKHMVDDKIHSRARGPVQILTSQPV 906


>gi|45545347|gb|AAS67521.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Sphaerophorus globosus]
          Length = 903

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 321/935 (34%), Positives = 470/935 (50%), Gaps = 124/935 (13%)

Query: 201  AEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-----NKRNRLI--VRLVDMSKFEDIKGG 253
            +EKV +AQE+     + V         Y +E      + +RLI  +++    K E  KGG
Sbjct: 1    SEKVLIAQERSAANIVQVFKKAQSNTPYVAEIRSAVERGSRLISGMQIKLYEKGEGSKGG 60

Query: 254  ---EKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNK 310
                   ++ ++ TEIPI I+F ALG+ SD++I+N I +  +D  +L +L   I +A   
Sbjct: 61   FGQTIKCTLPYIKTEIPIAIVFRALGIVSDEDILNHICYDRKDTQMLEMLKPCIEEAFVI 120

Query: 311  CD-----EF--RKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSL---HGTK-QKAR 359
             D     +F  ++G +     DK IK           + M   L P +    GT+ +KA 
Sbjct: 121  QDREVALDFIGKRGNSQGVTRDKRIK--------YARDIMQKELLPHISQSEGTETRKAF 172

Query: 360  FLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDL 419
            FLGYMV  LLQ   GRR+ D+RD F  KRL+LAG LL    ++      K + K LQR +
Sbjct: 173  FLGYMVHRLLQCALGRREVDDRDHFGKKRLDLAGPLLAGLFRMLFNKLTKDVYKYLQRCV 232

Query: 420  YGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDL 479
              ++    +   + ++ LTNGL  + +TG W    K     +G+   L R     TL  L
Sbjct: 233  ENNKEFN-LTLAVKSTTLTNGLKYSLATGNWGDQKKAASSKAGVSQVLNRYTFASTLSHL 291

Query: 480  RRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIF 538
            RRT   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   ++  +  EPI 
Sbjct: 292  RRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMCYITVGTPSEPII 351

Query: 539  EQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEI 598
            + +   GM+ L +    +     K+FV+G W+GV +D    VS ++  RRR  L  +V +
Sbjct: 352  DFMVQRGMDLLEEYEPLNSPNATKIFVNGVWVGVHRDPAHLVSTVQNLRRRGHLSHEVSL 411

Query: 599  KRDELQSEVRIFMDAGRILRPLLVVEN-------------------------MG---KIK 630
             RD    E +IF DAGR+ RPL V++N                         MG     +
Sbjct: 412  VRDIRDREFKIFTDAGRVCRPLFVIDNDPKSNNCGNLVLTKDHIAKLEEDKEMGMSMDAQ 471

Query: 631  SLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIK----------- 679
              E K   +  L+  G++E V  EEEE       I    +D+E  K I+           
Sbjct: 472  EREDKLMGWTGLVKSGVVEYVDAEEEETIM----IVMTPEDLEISKQIQAGYTMPEQNPD 527

Query: 680  ----------------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGF 723
                            +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G 
Sbjct: 528  DLNKRVKAPLNQTSHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS-AMGKQAMGV 586

Query: 724  PTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNV 783
              TN   R+DT+++ L+YPQ+PL  T   +            L   EL  GQNAIVA+  
Sbjct: 587  FLTNYDQRMDTMANILYYPQKPLATTRSME-----------FLKFRELPAGQNAIVAIAC 635

Query: 784  HLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIG 843
            + GYNQEDS++MN++S++RG+FRS   RSY  +     M V  +    M +   ++ K G
Sbjct: 636  YSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKRVGMSVVEQFEKPMRS-DTLKLKHG 694

Query: 844  RVDSLDDDGFPFIGANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGM 888
              D LDDDG    G  +   DI+IGK A                +  D S  L+ TE G+
Sbjct: 695  TYDKLDDDGIVAPGVRVSGEDIIIGKTAPISPDAEELGQRTKQHTKRDTSTPLRSTENGI 754

Query: 889  VQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVP 948
            V +V+LS+N DG  F  V +R  + P +GDKF+S HGQKG +G    QE+ PFT +G+VP
Sbjct: 755  VDQVLLSTNSDGLRFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVP 814

Query: 949  DIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRA 1008
            D++INPHA PSR T   L+E  L K +++L      G +  ATPF   +VD+++  L   
Sbjct: 815  DLIINPHAIPSRMTIAHLIECQLSK-VSSL-----RGFEGDATPFTEVTVDSVSRLLREH 868

Query: 1009 GFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIH 1043
            G+   G E +Y+G TG+ +R+ +F+GPT+YQRL H
Sbjct: 869  GYQSRGFEIMYNGHTGQKLRAQVFLGPTYYQRLRH 903


>gi|45330861|gb|AAS57791.1| RNA polymerase II second largest subunit [Cortinarius iodes]
          Length = 878

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 297/857 (34%), Positives = 447/857 (52%), Gaps = 98/857 (11%)

Query: 258  SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG 317
            ++ ++  +IPIW++F ALGV SD++I+  I +  +D  +L +L   I D     D     
Sbjct: 55   TIPYIKVDIPIWVVFRALGVISDRDILEHICYDLQDSQMLEMLKPCIDDGFVIQDR---- 110

Query: 318  RNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSL---HGTK-QKARFLGYMVK 366
              AL ++    +GTT   G S E       E +   + P +    G++ QKA F GYM+ 
Sbjct: 111  EVALDFIGN--RGTT--TGLSRERRIRYAQEILQKEMLPHVAMKEGSEYQKAHFFGYMIH 166

Query: 367  CLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR 426
             LL A   RR+ D+RD F  KRL+LAG LL    ++      K + + LQ+ +   +   
Sbjct: 167  RLLLAALERRELDDRDHFGKKRLDLAGPLLSNLFRMLFRKLTKDVYRYLQKCVETHKEFN 226

Query: 427  PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
             +   +    +TNGL  + +TG W    K     +G+   L R     TL  LRR    +
Sbjct: 227  -LALAVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPL 285

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSG 545
               GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  SI  P  E L   G
Sbjct: 286  GREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSIAAPGIEFLEEWG 345

Query: 546  MEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQS 605
            +E L ++ S+S     K+FV+G WIGV +D  + V  L++ RR+ ++  ++ I RD  + 
Sbjct: 346  LESL-EEHSHSPAPSTKIFVNGVWIGVHRDPANLVKTLKKLRRKDDISPEISIVRDIREK 404

Query: 606  EVRIFMDAGRILRPLLVVENMGKIKSL------------EGKNYTFQALLDHGIIELVGT 653
            E+R++ DAGR+ RPL +VEN   I               EG+ + +  L+  GIIEL+  
Sbjct: 405  ELRVYSDAGRVCRPLFIVENQRLILQKRHVRWLNNGINDEGEEFKWDRLIKGGIIELLDA 464

Query: 654  EEEEDCCTAWGIKYLLKDIEDKKPIK--------------------------FTHCELDM 687
            EEEE       I    +D+E+ +  +                           THCE+  
Sbjct: 465  EEEETVM----ISMTPEDLENSRLQRPGVDPQANEGEFDPAARLKAGTHAHTLTHCEIHP 520

Query: 688  SFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLF 747
            S +LG+   IIPF +H+ + R  YQS     QA+G   TN  IR+DT+++ L+YPQ+PL 
Sbjct: 521  SMILGICASIIPFPDHNQSPRNTYQSAM-GKQAMGIYLTNFLIRMDTMANILYYPQKPLA 579

Query: 748  RTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRS 807
             T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS
Sbjct: 580  TTRSME-----------YLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRS 628

Query: 808  EHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVI 867
             + RSY  +++ K    +    +       ++ K G  D L+DDG    G  +   DI+I
Sbjct: 629  IYYRSY-MDLEKKSGIQQLEEFEKPTRENTLRLKHGTYDKLEDDGLIAPGTGVAGEDIII 687

Query: 868  GKYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVR 912
            GK A                +  D S  LK TE G+V +V++++N +G+ F  V +R  R
Sbjct: 688  GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSSR 747

Query: 913  SPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALG 972
             P +GDKF+S HGQKG +G    QE+ PFT +GIVPD++INPHA PSR T G L+E  L 
Sbjct: 748  IPQIGDKFASRHGQKGTVGITYRQEDMPFTAEGIVPDVIINPHAIPSRMTIGHLVECLLS 807

Query: 973  KGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIF 1032
            K    +G       +  ATPF   +V++++  L + G+   G E +Y G TG  +++ ++
Sbjct: 808  KVATLIGN------EGDATPFTDLTVESVSIFLRQKGYQSRGLEVMYHGHTGRKLQAQVY 861

Query: 1033 IGPTFYQRLIHMSEDKV 1049
            +GPT+YQRL HM +DK+
Sbjct: 862  LGPTYYQRLKHMVDDKI 878


>gi|357610728|gb|EHJ67119.1| hypothetical protein KGM_22531 [Danaus plexippus]
          Length = 1085

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 347/1106 (31%), Positives = 517/1106 (46%), Gaps = 145/1106 (13%)

Query: 111  PRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIP 170
            P   RL++MTYS+ + V +++    Q+ +  +K                     +IGR+P
Sbjct: 71   PHECRLRDMTYSAPITVDIEYIRGNQRVIFKNKQ--------------------LIGRMP 110

Query: 171  VMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGW 224
            +M++S  C +         +  +C  D GGYFII+G EKV + QEQ+   R+ V    G 
Sbjct: 111  LMLRSSNCVLTNKSDFELAQLNECPHDPGGYFIIRGQEKVILIQEQLSRNRMIVDEFKGA 170

Query: 225  T---VAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDK 281
                V   +  K+ R IV          +K G+ VL    LS +IPI ++F A+G+ SD+
Sbjct: 171  IQCQVTSSTHEKKTRTIV---------IVKNGKYVLRHNALSDDIPICVVFKAMGICSDQ 221

Query: 282  EIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTF-------- 333
            EI+ L+     D +I   +   I D  N    F + + AL Y+   +K   F        
Sbjct: 222  EIMQLVG---TDDAIAKKMAPCIMDCHN-LKVFTQNQ-ALAYIGSKLKVKRFQSATSKFR 276

Query: 334  PPGESTEECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRL 389
             P +   + + T +   +    +    KA +L  MVK +++A + +   D+ D + NKRL
Sbjct: 277  TPVDEARDLIATTILAHVVVENYNFYVKAIYLAIMVKRVIEAETNKAAIDDPDYYGNKRL 336

Query: 390  ELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGA 449
            ELAG LL     +      KR    L+     D+ +  ++              A   G 
Sbjct: 337  ELAGSLL----ALMFEDLFKRFNWELKS--IADKIIPRVK-------------AAPFDGN 377

Query: 450  WSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFL 509
            W+    + ER  G+   L R + +  L  + R   Q + T KV   R   PS WG +C  
Sbjct: 378  WTIKRFKMER-HGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPS 436

Query: 510  STPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGME--KLADDASYSLGGKFKVFVD 566
             TP+GE CGLVKNL +   ++T   E PI     N+G+E  +L      +    + VF++
Sbjct: 437  DTPEGEACGLVKNLALMTHITTECSEGPISRLACNAGVEDVRLLGGEEINHPALYMVFLN 496

Query: 567  GDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE-- 624
            G+ +GV ++    +   R  RRR  +   V I  +  Q  V I  D GR+ RP ++VE  
Sbjct: 497  GNILGVTREYKKLIKIFRMFRRRGLISAFVSIYPNHNQRTVYICSDGGRLCRPYIIVEKG 556

Query: 625  ----NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKF 680
                    I  L      FQ  L+ G+IE +   EE D      I  +  +I+   P   
Sbjct: 557  LPLVQQHHINELNRGIRKFQDFLNDGLIEYLDVNEENDS----HIATVETEID---PYVT 609

Query: 681  THCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLF 740
            TH E++   +LG+  G++P+ +H+ + R  YQ      QA+G    N   R+DTL + L 
Sbjct: 610  THLEIEPFTILGVCAGLVPYPHHNQSPRNTYQC-AMGKQAMGTIGYNQKNRIDTLMYNLV 668

Query: 741  YPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASL 800
            YPQ P+ +T   +           +    +L  GQNA VAV  + GY+ ED+L++NRAS+
Sbjct: 669  YPQCPMVKTRTIE-----------LTNFDKLPAGQNATVAVMSYSGYDIEDALILNRASI 717

Query: 801  ERGMFRSEHIRSYKAEVDNKEMQVKRR---SSDDMVNFGKIQSKIGRVDSLDDDGFPFIG 857
            +RG  R    +S K  +     Q   R    S D  N GK+   I   + LD DG    G
Sbjct: 718  DRGYGRCLVYKSAKTIMKRYSNQTSDRILGPSRD-ANTGKV---IKAHEVLDSDGIAAPG 773

Query: 858  ANLQSGDIVIGKYADSGA---------------DHSIKLKHTERGMVQKVVLSSNDDGKN 902
              +++  ++I K                     D  I  K      ++KV++SSN +   
Sbjct: 774  EMVENRQVLINKQMPPATLNPINQGQPQQIDYKDVPITYKGPVESYIEKVMVSSNSEDAF 833

Query: 903  FSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQT 962
               + LRQ R P +GDKFSS HGQKGV G +  QE+ PF  +GI PD+++NPH FPSR T
Sbjct: 834  LIKILLRQTRIPEIGDKFSSRHGQKGVTGLIVQQEDMPFNDRGICPDMIMNPHGFPSRMT 893

Query: 963  PGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGR 1022
             G+ +E   GK       G+  G   Y T F    V  + ++L + G++  G +  Y G 
Sbjct: 894  VGKTIELLAGKA------GLMEGKFHYGTAFGGSKVRDVCQELEKHGYNYHGKDIFYSGI 947

Query: 1023 TGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1082
            TGE + + I+ GP +YQ+L HM +DK+  R  GP   LTRQP   R R GG++ GEMERD
Sbjct: 948  TGEPLEAYIYSGPVYYQKLKHMVQDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERD 1007

Query: 1083 CLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDD 1142
            CLI +GA+  L ERL   SD++   IC  C             GR     +C  C S   
Sbjct: 1008 CLIGYGASMLLMERLMLASDAFSADICSSC-------------GRLASRAWCHACRSS-A 1053

Query: 1143 IVKANVPYGAKLLCQELFSMGITLKF 1168
            +   ++PY  KLL QEL SM I  + 
Sbjct: 1054 VSAVDMPYACKLLFQELASMNIVPRL 1079


>gi|6606119|gb|AAF19072.1|AF107800_1 DNA-dependent RNA polymerase II RPB140 [Dothidea insculpta]
 gi|82706467|gb|ABB89611.1| RNA polymerase II second largest subunit, partial [Dothidea
            insculpta]
          Length = 936

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 318/964 (32%), Positives = 475/964 (49%), Gaps = 116/964 (12%)

Query: 201  AEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-----NKRNRLI--VRLVDMSKFEDIKGG 253
            +EKV +AQE+     + V    G      +E      K +RLI  ++L   SK +  KGG
Sbjct: 1    SEKVLIAQERSAANIVQVFRKKGSPTPVVAEIRSAVEKGSRLISSMQLKLFSKGDSQKGG 60

Query: 254  ---EKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNK 310
                   ++ ++ ++IPI I+F ALGV SD +I++ I +   D  +  ++   + +A   
Sbjct: 61   LGGTIKATLPYIKSDIPIAIVFRALGVVSDMQILDCICYDANDSQMREMIKPCLEEAFVI 120

Query: 311  CDEFRKGRNALKYVDKLIK--GTTFPPGESTEECMNTYLFPSLH----GTKQKARFLGYM 364
             D       AL ++ K  +  GT         + M     P +        +KA FLGYM
Sbjct: 121  QDR----EVALDFIGKRGQQMGTREXRIRYARDVMQKEFLPHISQKEGSETRKAFFLGYM 176

Query: 365  VKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRT 424
            +  LLQ   GR + D+RD F  KRL+LAG L+ +  ++      +     L R + G + 
Sbjct: 177  INRLLQCALGRVEEDDRDHFGKKRLDLAGPLMAQVFRLKFTQLIRDTRVYLSRCVEGGKE 236

Query: 425  VRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQ 484
               +   + A+IL++GL    +TG W    K     +G+   L R     TL  LRRT  
Sbjct: 237  FN-LTLAVKANILSSGLRYCLATGNWGDQKKAASAKAGVSQVLNRYTYASTLSHLRRTNT 295

Query: 485  QVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFN 543
             +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   VS  +  EPI E +  
Sbjct: 296  PIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPSEPIIEFMNQ 355

Query: 544  SGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDEL 603
              ME L +    +     KVFV+G W+GV +D    V  ++  RR   +  ++ + RD  
Sbjct: 356  RNMELLEEYEPKNNPDATKVFVNGVWVGVHRDPAQLVKVVQSLRRSGTISFEISLIRDVR 415

Query: 604  QSEVRIFMDAGRILRPLLVVEN-------------MGKIKSLEGKN-------------- 636
              E +IF DAGR++RPL VV+N                I+ L+                 
Sbjct: 416  DREFKIFTDAGRVMRPLFVVDNEPTSERRGHLVLARSNIERLQTDREMDLTGLSEEQRDS 475

Query: 637  --YTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIK--------------- 679
              Y ++ L+  GIIE +  EEEE    A  I    +D+++ + ++               
Sbjct: 476  NIYGWKGLIGDGIIEYLDAEEEE----AAMITMSPEDLDEHRQVRAGAPVYDDVGLDPHR 531

Query: 680  ------------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTN 727
                        +THCE+  + +LG+   IIPF +H+ + R  YQS     QA+G   TN
Sbjct: 532  RFKAKPNQSVRMWTHCEIHPAMILGICASIIPFPDHNQSPRNTYQS-AMGKQAMGVTLTN 590

Query: 728  PSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGY 787
             ++R+DT+++ L+YPQ+PL  T   +            L   EL  GQNAIVA+  + GY
Sbjct: 591  YNVRMDTMANVLYYPQKPLGTTRSME-----------YLKFRELPAGQNAIVAIACYGGY 639

Query: 788  NQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDS 847
            NQEDS++MN++S++RG+FRS   R+Y  +     M V  +  +       ++ K G  D 
Sbjct: 640  NQEDSVIMNQSSIDRGLFRSLFYRAYMDQEKRVGMSVVEQF-EKPTRADTLRMKHGTYDK 698

Query: 848  LDDDGFPFIGANLQSGDIVIGKYADSGADH---------------SIKLKHTERGMVQKV 892
            LDDDG    G+ +   DI+IGK A    D                S  L+ TE G++ +V
Sbjct: 699  LDDDGIISPGSRVSGEDIIIGKTAPMAPDAEELGQRTKLHVKRDVSTPLRSTESGIIDQV 758

Query: 893  VLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVI 952
            +L++N DG  F  V  R  + P +GDKF+S HGQKG +G    QE+ PFT  G+VPD++I
Sbjct: 759  LLTTNIDGHKFVKVRTRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFTADGLVPDLII 818

Query: 953  NPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSK 1012
            NPHA PSR T   L+E  L K       G   G +  ATPF   ++  +++ L   GF +
Sbjct: 819  NPHAIPSRMTIAHLIECLLSK------VGALRGQEGDATPFTDVTITQVSDLLRAHGFQQ 872

Query: 1013 WGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFG 1072
             G E +Y+G TG+   + +F+GPT+YQRL HM +DK+  R  GP   LTRQPV  R R G
Sbjct: 873  RGFEIMYNGHTGKKQVAQVFLGPTYYQRLRHMVDDKIHARARGPXQILTRQPVEGRARDG 932

Query: 1073 GIKF 1076
            G++F
Sbjct: 933  GLRF 936


>gi|154277042|ref|XP_001539366.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Ajellomyces
            capsulatus NAm1]
 gi|150414439|gb|EDN09804.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Ajellomyces
            capsulatus NAm1]
          Length = 1186

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 359/1207 (29%), Positives = 558/1207 (46%), Gaps = 169/1207 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN F++  L+K   +  E  +    DP+           +RF  +
Sbjct: 77   AFLKIKGLVKQHIDSYNYFVEVQLKKIVQASAE--IRSDVDPN---------FYIRFHDI 125

Query: 92   TLDKPSFFAGNGGDEHDMF----PRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
             L  P         + D+     P   RL++MTY++ + V  ++ V  ++RV  +     
Sbjct: 126  YLGNPRRADEEQDSKFDLASTITPNECRLRDMTYAAPILVDFEY-VRGRQRVKRN----- 179

Query: 148  REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGA 201
                              IGR+PVM++S  C +    + +      C  D GGYFI+ G 
Sbjct: 180  ---------------GTAIGRMPVMLRSSKCVLSNKSEAEMQLLQECPLDPGGYFIVNGT 224

Query: 202  EKVFVAQEQICLKRLWVSNSMGWTVAYKS------ENKRNRLIVRLVDMSKFEDIKGGEK 255
            EKV + QEQ+   R+ V   +   +   S      E K    I+          +K    
Sbjct: 225  EKVILVQEQLSKNRVIVETDLKKDIVQASVTSSSNERKSKSYII----------LKKDRI 274

Query: 256  VLSVYFLSTEIPIWILFFALGVSSDKEIVNL---IDFTCEDCSILNILFASIHDADNKCD 312
             +    LS ++PI IL  A+G+ SDKE++ L   ID T ++       FA   +   K  
Sbjct: 275  YMRHNVLSEDVPIVILLKAMGIQSDKEMLLLVAGIDSTFQED------FAINFEESVKLG 328

Query: 313  EFRKGRNALKYVDKLIKGTTFPPG-------------ESTEECMNTYLFPSLHGTKQKAR 359
             + +   AL+Y+   IK    P               E+    + +++       + KA 
Sbjct: 329  IYTQ-HQALEYIGSRIKINRKPNSFGITRRNHVQEAIEAISSVIISHVVVENLNFRPKAL 387

Query: 360  FLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL-----------ERELKVHIAHAR 408
            ++ +M + +L A       D+RD   NKRLELAG+LL           + ++K++I    
Sbjct: 388  YVAHMARRVLMAKHDPSLVDDRDYVGNKRLELAGQLLALLFEDLFKKFQFDIKMNIDKVL 447

Query: 409  KRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLG 468
            K+  +  Q D YG   +         + +T G++RA STG WS    R ER +G+   L 
Sbjct: 448  KKPVRTEQFDAYGVVAIH-------GNHITQGMNRAISTGNWSLKRFRMER-AGVTHVLS 499

Query: 469  RANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGL 528
            R + +  L  + R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL +   
Sbjct: 500  RLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTH 559

Query: 529  VSTSILE-PIFEQLFNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVSELRR 585
            ++T+  E P+ + +F  G E +       L G+  + +F++G  I + +    F++  RR
Sbjct: 560  ITTNDEEQPVRKLIFALGAEDVQTVGGRELHGQGAYIIFLNGSPIALTRRPKFFLNSFRR 619

Query: 586  KRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDH 645
             RR   +   + +  +  Q+ V +  D GRI RPL++VE+ GK    +  N T   L+  
Sbjct: 620  LRRTGRVSEFISVFINHHQNAVHVATDDGRICRPLIIVED-GKSNERDDGNSTTSWLMVS 678

Query: 646  GIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDH 705
              I +V  +           +   + I     + F+           L  G+IP+ +H+ 
Sbjct: 679  WSIWIVMRKTTSYIAVYEEDRLRARRIWKSNRLPFS----------ALWPGLIPYPHHNQ 728

Query: 706  ARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHI 765
            + R  YQ      QAIG    N  +R+D+L + + YPQ+P+ +T   +           +
Sbjct: 729  SPRNTYQC-AMGKQAIGAIANNQFLRIDSLLYTMVYPQKPMVKTRTIE-----------L 776

Query: 766  LPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVK 825
            +   +L  GQ+A VAV  + GY+ ED+LV+N+ S++RG  R +  R Y   + +     K
Sbjct: 777  IKYDKLPAGQSATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRKYSTNLKSYSNGTK 836

Query: 826  RR-SSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD--------SGAD 876
             +    D  N   I+        LD+DG   +G  +  G++ I K           +G+D
Sbjct: 837  DKLKGPDRENGVPIRKHA----LLDNDGLAAVGEKVNHGEVYINKVTPENALSSGITGSD 892

Query: 877  HSIKL---------KHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQK 927
                +         K  +   + KV++S+ +       V  RQ R P +GDKFSS HGQK
Sbjct: 893  AGRPIAYIPSPQTYKLPDPSYIDKVMISATEAENQLIKVQTRQTRVPEVGDKFSSRHGQK 952

Query: 928  GVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLK 987
            GV+G +    + PF+  GIVPDI++NPH FPSR T G++LE   GK       GI SG  
Sbjct: 953  GVVGIIAEHADMPFSDLGIVPDIIMNPHGFPSRMTVGKMLELIAGKA------GILSGQF 1006

Query: 988  RYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSED 1047
             Y T F    V+ ++  L   GFS  G + L  G TGE + + +F+GP +YQ+L HM +D
Sbjct: 1007 GYGTAFGGSPVEEMSAILVDHGFSYGGKDYLTSGITGEPLPAYVFMGPIYYQKLKHMVQD 1066

Query: 1048 KVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMH 1107
            K+  R  GP   LTRQP   R R GG++ GEMERDCLIA+G +  L ERL   SD +++ 
Sbjct: 1067 KMHSRARGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEVD 1126

Query: 1108 ICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT-- 1165
            +C  C  +  +              +C+ C +   +VK  +PY AKLL QELFSM +   
Sbjct: 1127 VCENCGFMGYL-------------GWCQRCKTSRGVVKMAIPYAAKLLVQELFSMNVVAR 1173

Query: 1166 LKFDTEF 1172
            LK   EF
Sbjct: 1174 LKLADEF 1180


>gi|120561263|gb|ABM27016.1| RNA polymerase II second largest subunit, partial [Catenaria
            anguillulae]
          Length = 892

 Score =  457 bits (1177), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 323/933 (34%), Positives = 474/933 (50%), Gaps = 131/933 (14%)

Query: 201  AEKVFVAQEQICLKRLWVSNSMGWTVAYKSENK------RNRLIVRLVDMSKFEDIKGGE 254
            +EKV +AQE+     ++V +  G   AY++E +      +  L   +V M K   I    
Sbjct: 1    SEKVIIAQERTATNTVFVFSKPGG--AYQAEIRSQSDAGQRTLSSFIVRMDKQRRI---- 54

Query: 255  KVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEF 314
               S+ ++  EIP+ I+F ALGV SDK+I+  I +  +D  +L +L   I  AD   D+ 
Sbjct: 55   -TCSLPYIQEEIPLPIVFRALGVHSDKQILETICYHFDDDQMLEMLKPCIEQADVIQDQE 113

Query: 315  -------RKGR-------NALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARF 360
                   R+GR         ++Y   L++  T P   +T  C             +KA F
Sbjct: 114  LALDHIGRRGRVTNMHRDQRIRYARDLLERETLPHIGTTPGC-----------ETRKAWF 162

Query: 361  LGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLY 420
            +GYMV  +L A  GRR  D+RD F  KRL+LAG LL    K   +   K + +   + + 
Sbjct: 163  IGYMVHRMLLAALGRRPIDDRDHFGKKRLDLAGPLLASLFKTFFSKFVKDITREFTKSIE 222

Query: 421  GDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLR 480
              +    +   +   I+TNGL  A +TG W    K  E  +G+   L R     TL  LR
Sbjct: 223  RSQGPFHLASVVKPGIITNGLRYALATGNWGDQKKFMETRAGVSQVLNRYTFASTLSHLR 282

Query: 481  RTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFE 539
            R    +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  +  EP+ E
Sbjct: 283  RLNTPIGREGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMAYISVGTSAEPVVE 342

Query: 540  QLFNSGMEKLAD--DASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELP---- 593
             L   G+E L +  DAS ++    KVFV+G W+G+  D       LR  RR  +L     
Sbjct: 343  ALQEYGIENLEEISDAS-AVADATKVFVNGAWVGIHSDPADLFKTLREMRRMGDLTPPHL 401

Query: 594  --TQVEIKRDELQSEVRIFMDAGRILRPLLVV-ENMGKIK--------SLEGKN------ 636
               +V I RD   +E+RI+ D GRI+RPL VV E+  ++K        +LE         
Sbjct: 402  DEPEVSIVRDIRDNEIRIYTDPGRIMRPLFVVNEDTQRLKLRKAHVAAALEALKVDDDVK 461

Query: 637  ---------YTFQALLDHGIIELVGTEEEE---------DCCTAWGIKYLLKD------- 671
                      +++ LL  G++EL+ TEEEE         D   + G K + K        
Sbjct: 462  ETDEMRDSLMSWRNLLRQGVLELMDTEEEEMAMISMTPADLAESRGDKVVDKSKFDKTAR 521

Query: 672  IEDKKP----IKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTN 727
            ++ +KP     ++THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN
Sbjct: 522  LKSRKPGEYCKRWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS-AMGKQAMGVFLTN 580

Query: 728  PSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGY 787
              +R+DTL++ L+YPQRPL  T              ++  R EL  GQNAIVA+  + GY
Sbjct: 581  FQLRMDTLANILYYPQRPLVTT----------RSMTYLRFR-ELPAGQNAIVAITCYSGY 629

Query: 788  NQEDSLVMNRASLERGMFRSEHIRSY---KAEVDNKEMQVKRRSSDDMVNFGKIQSKIGR 844
            NQEDS++MN++S++RG+FRS + RSY   + +    E +V  + + D      ++ + G 
Sbjct: 630  NQEDSVIMNQSSIDRGLFRSIYYRSYFDSEKKSGGVEEEVFEKPNRDTT----MRLRRGT 685

Query: 845  VDSLDDDGFPFIGANLQSGDIVIGKYA-------DSGA-------DHSIKLKHTERGMVQ 890
             D LDDDG    G  ++  DI++GK A       + GA       D S  LK TE+G V 
Sbjct: 686  YDLLDDDGIISPGTQVKGDDIILGKTAPLPDDVSEMGARTTQTKKDVSTSLKATEKGYVD 745

Query: 891  KVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDI 950
             V++++N D   F  V +R  R P +GDKF+S HGQKG +G    QE+ PF+  G+ PD+
Sbjct: 746  HVIVTTNADNLKFVKVRVRSTRVPQMGDKFASRHGQKGTVGVTYRQEDMPFSALGVTPDL 805

Query: 951  VINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGF 1010
            ++NPHA PSR T G L+E  L K       G   G +  ATPF   +V  I++QL + GF
Sbjct: 806  IVNPHAIPSRMTIGHLVECLLSK------VGALVGTEGDATPFTDLTVQEISQQLAQHGF 859

Query: 1011 SKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIH 1043
             + G E +Y+G TG  + + +F GPT+YQRL H
Sbjct: 860  QQRGFEVMYNGHTGRKLDAQVFFGPTYYQRLKH 892


>gi|6606117|gb|AAF19071.1|AF107799_1 DNA-dependent RNA polymerase II RPB140 [Aureobasidium pullulans]
          Length = 936

 Score =  457 bits (1177), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 322/971 (33%), Positives = 468/971 (48%), Gaps = 130/971 (13%)

Query: 201  AEKVFVAQEQICLKRLWVSNSMGWTVAYKSE-----NKRNRLI--VRLVDMSKFEDIKGG 253
            +EKV +AQE+     + V    G      +E      K  RL+  ++L    K E  KGG
Sbjct: 1    SEKVLIAQERSAANIVQVFKKKGSPTPIVAEIRSATEKGTRLLSSMQLKLYQKGEQKKGG 60

Query: 254  EKV----LSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFAS------ 303
                    ++ ++  +IPI I+F ALG+ SD +I++ I +   D  +  ++         
Sbjct: 61   ILTGTIKATLPYIKADIPIVIVFRALGIVSDMQILDCICYDANDTQLREMIKPCLEEAFV 120

Query: 304  IHDADNKCDEFRKGRNALKYVDKLIK------GTTFPPGESTEECMNTYLFPSLHGTKQK 357
            + D +N  D   K  N +   +K I+         F P  S  E   T          +K
Sbjct: 121  VQDRENALDFIGKRGNQVGGKEKRIRYARDILQKEFLPHISQREGSET----------RK 170

Query: 358  ARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQR 417
            A FLGYM+  + Q   GR   D+RD F  KRL+L+G L+ +  ++      + M   L R
Sbjct: 171  AFFLGYMINRMCQVMLGRCDEDDRDHFGKKRLDLSGPLMAQVFRLKFTQLVRDMRVYLSR 230

Query: 418  DLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLV 477
             +   R    +   + ++ILT+GL    +TG W    K     +G+   L R     TL 
Sbjct: 231  CIEQGRDFN-LTLAVKSNILTSGLRYCLATGNWGDQKKAASAKAGVSQVLNRYTYASTLS 289

Query: 478  DLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEP 536
             LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   VS  +  EP
Sbjct: 290  HLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPAEP 349

Query: 537  IFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQV 596
            I E +    ME L +    +     KVFV+G W+GV +D    V  ++  RR   +  ++
Sbjct: 350  IVEFMNQRNMELLEEYEPKNNPDATKVFVNGVWVGVHRDPSQLVKVVQSLRRNGTISFEI 409

Query: 597  EIKRDELQSEVRIFMDAGRILRPLLVVEN-------------MGKIKSL----------- 632
             + RD  + E +IF DAGR++RPL VV N                I  L           
Sbjct: 410  SLIRDVREREFKIFTDAGRVMRPLFVVNNDPASPTKGQLTLNRSHISQLLNARETDTIGL 469

Query: 633  -----EGKNYTFQALLDHGIIELVGTEEEEDCCTAW-------------GIKYLLKDIED 674
                 +G  Y ++ L+  G++E +  EEEE                   G+ Y     + 
Sbjct: 470  SEEERDGTIYGWKNLISDGVVEYLDAEEEEVAMMVMSPEDLDEHRQMRAGLVYEEPVTDP 529

Query: 675  KKPIK---------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPT 725
             + IK         +THCE+  + +LG+   IIPF +H+ + R  YQS     QA+G   
Sbjct: 530  HRRIKSRPNANVRTWTHCEIHPAMILGICASIIPFPDHNQSPRNTYQS-AMGKQAMGITL 588

Query: 726  TNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHL 785
            TN ++R+DT+++ L+YPQ+PL  T   +            L   EL  GQNAIVA+  + 
Sbjct: 589  TNYNVRMDTMANVLYYPQKPLGTTRSME-----------YLKFRELPAGQNAIVAIACYS 637

Query: 786  GYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQV-----KRRSSDDMVNFGKIQS 840
            GYNQEDS++MN++S++RG+FRS   R+Y  +     M V     K    D M      + 
Sbjct: 638  GYNQEDSVIMNQSSIDRGLFRSLFYRAYMDQEKRVGMSVVEQFEKPTRGDTM------RM 691

Query: 841  KIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH---------------SIKLKHTE 885
            K G  D LDDDG    G  +   DI+IGK A    D                S  L+ TE
Sbjct: 692  KHGTYDKLDDDGIIAPGTRVSGEDIIIGKTAPMAPDAEELGQRTKFHIKRDVSTPLRSTE 751

Query: 886  RGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQG 945
             G++ +V+L++N +G  F  V  R  + P +GDKF+S HGQKG +G    QE+ PFT  G
Sbjct: 752  SGLIDQVLLTTNVEGLKFVKVRTRTTKIPQIGDKFASRHGQKGTIGITYRQEDMPFTADG 811

Query: 946  IVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQL 1005
            +VPDI+INPHA PSR T   L+E  L K       G   G +  ATPF   +V  I++ L
Sbjct: 812  LVPDIIINPHAIPSRMTIAHLIECLLSK------VGSLRGQEGDATPFTDVTVTQISDLL 865

Query: 1006 HRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPV 1065
             + GF + G E +Y+G TG  + + +F+GPT+YQRL HM +DK+  R  GP   LTRQPV
Sbjct: 866  RQHGFQQRGFEVMYNGHTGRKMNAQVFLGPTYYQRLRHMVDDKIHARARGPTQILTRQPV 925

Query: 1066 ADRKRFGGIKF 1076
              R R GG++F
Sbjct: 926  EGRARDGGLRF 936


>gi|120561249|gb|ABM27009.1| RNA polymerase II second largest subunit, partial [Mucor hiemalis]
          Length = 884

 Score =  457 bits (1176), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 303/913 (33%), Positives = 476/913 (52%), Gaps = 99/913 (10%)

Query: 201  AEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKR-----NRLIVRLVDMSKFEDI 250
            +EKV +AQE++    ++V      ++  +T   +S+N++     + L ++++  S     
Sbjct: 1    SEKVLIAQERMATNTVYVFSKAPPSNFQYTAEIRSQNEKGSKNASPLFIKMMRASAERGS 60

Query: 251  KGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNK 310
             G     ++ ++ +E+PI I+F ALG  +D++++  I +   D  +L +L  SI +A   
Sbjct: 61   SGQCIRAALPYIRSEVPIVIVFRALGQVADRDVLEHICYDRNDYEMLELLKPSIEEAFVI 120

Query: 311  CDEFRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLHGTK-----QKA 358
             D+      AL ++ K  +GTT   G + E       E +   L P + GT      +K+
Sbjct: 121  QDQ----DVALDFIGK--RGTTV--GATRERRIKYASEILQKELLPHV-GTAYKTETRKS 171

Query: 359  RFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRD 418
             F GYM+  LL A   RR+ D+RD +  KR++LAG L+    ++      K +AK LQ+ 
Sbjct: 172  YFFGYMIHRLLLAALERRELDDRDHYGKKRMDLAGVLMSGLFRLLFKKLTKDVAKYLQKC 231

Query: 419  LYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVD 478
            +   R    +   + ++ +TNGL  + +TG W    K  +  +G+   L R     TL  
Sbjct: 232  IESSREFN-LTLAVKSNTITNGLKYSLATGNWGDQKKAAQARAGVSQVLNRYTFASTLSH 290

Query: 479  LRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPI 537
            LRR    +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  S   P+
Sbjct: 291  LRRCNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMSYISVGSAATPL 350

Query: 538  FEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVE 597
               L    ME L + ++ S+    KVFV+G WIG+ +D    ++ L++ RR  ++  +V 
Sbjct: 351  IMFLEEWAMENLEELSATSIADATKVFVNGVWIGIHRDPGELINSLKQMRRSVDISPEVS 410

Query: 598  IKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKSLEGKNYTFQALLDHGII 648
            I RD  + E+R++ DAGR  RPL +VEN         + +I+  E  ++ +Q ++  GI+
Sbjct: 411  IVRDIREKELRMYTDAGRCCRPLFLVENQQLRLNREHIMRIQDTE-DDFGWQDMIADGIV 469

Query: 649  ELVGTEEEED---CCTAWGIKYLLKDIEDKKPIK-------------------FTHCELD 686
            E V  +EEE    C T   +       +   P++                   +THCE+ 
Sbjct: 470  EYVDADEEETAMICMTPEDLAESRMTAQYGAPLQETRDLASRVKSQTGSYSHTWTHCEIH 529

Query: 687  MSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPL 746
             S +LG+   IIPF +H+ + R  YQS     QA+G   TN   R+DTL++ L+YPQ+PL
Sbjct: 530  PSMILGICASIIPFPDHNQSPRNTYQS-AMGKQAMGVYLTNFQTRMDTLANILYYPQKPL 588

Query: 747  FRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFR 806
              T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FR
Sbjct: 589  TTTRSME-----------FLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 637

Query: 807  SEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIV 866
            S   R+Y  + + K   +     +       ++ K G  + L+DDG    G  +   DI+
Sbjct: 638  SLFFRTY-MDAEKKAGMMFMEEFEKPTRDSTLRLKHGTYEKLEDDGLIAPGTRVSGDDII 696

Query: 867  IGKYADSGADH---------------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQV 911
            IGK A   AD                S  L+ TE G+V +V+L++N DG  F  V +R  
Sbjct: 697  IGKTAPIPADSEELGQRTTTHNKRDASTPLRSTETGIVDQVMLTTNQDGLKFVKVRVRST 756

Query: 912  RSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAAL 971
            R P +GDKF+S HGQKG +G    QE+FPF+ +GI PD++INPHA PSR T G ++E  L
Sbjct: 757  RVPQMGDKFASRHGQKGTIGMTYRQEDFPFSAEGITPDLIINPHAIPSRMTIGHMIECLL 816

Query: 972  GKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLI 1031
            GK ++ L     +G +  ATPF   +V+AI++ L   G+   G E +Y+G TG  +   +
Sbjct: 817  GK-VSTL-----TGNEGDATPFTDVTVEAISQALQAQGYQSRGFEVMYNGFTGRKLNVQV 870

Query: 1032 FIGPTFYQRLIHM 1044
            F+GPT+YQRL HM
Sbjct: 871  FLGPTYYQRLKHM 883


>gi|401421150|ref|XP_003875064.1| DNA-directed RNA polymerase polypeptide,putative [Leishmania mexicana
            MHOM/GT/2001/U1103]
 gi|322491300|emb|CBZ26568.1| DNA-directed RNA polymerase polypeptide,putative [Leishmania mexicana
            MHOM/GT/2001/U1103]
          Length = 1132

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 360/1209 (29%), Positives = 563/1209 (46%), Gaps = 132/1209 (10%)

Query: 8    FTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIV 67
            FT   ++ D GEE+ +        +     G+++H I S++  I+  LQ+   +     +
Sbjct: 2    FTGAHAMSDFGEEYQRKKLEMLP-ALMGMRGILNHHIASFDHLIEVELQRILLNESNVEI 60

Query: 68   EPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKV 127
            +   DP            +R+  + + +P    G G     + P+  R+++MTY   M V
Sbjct: 61   KSTVDPD---------FVIRYQNIRICRPQEIVGKGHIPKLVTPQECRIRDMTYRGDMIV 111

Query: 128  KVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM------K 181
             VQ+        + D+    R   ++K+V         IG IP+M+KS  C +      +
Sbjct: 112  DVQY-------TSRDR---SRAMLVEKDVK--------IGTIPIMLKSKCCNLYRKTREE 153

Query: 182  GVEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRL 241
             V   +C  D GGYFIIKG EKV + QEQ    R+ +      +++   ++K +  I + 
Sbjct: 154  LVNMRECPLDPGGYFIIKGVEKVCLVQEQQSKNRVIIEADEHGSISAHVQSKTHYSISKC 213

Query: 242  VDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILF 301
                     K G  VL+    + +IPI ++  ALG+ +D+ I   I  + E      ILF
Sbjct: 214  A-----VTFKKGSIVLTHRSFTEDIPIIVVLKALGLENDQHITQCIGTSPE---FQAILF 265

Query: 302  ASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMN--------TYLFPSL-- 351
                +A  +        +AL+Y+ +  K T +   E+ +  +N         +L   L  
Sbjct: 266  PCFEEA--RLLNVVTQNDALQYIGEKRKETVWEAEETQQRQVNRSKADKAAEFLANVLLC 323

Query: 352  ----------HGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELK 401
                         + KA ++ +MV+ +++A       D RD + NKR E  G L+    +
Sbjct: 324  HIREAQVQKDWNFRHKAFYVCFMVRGMIEASFDASLLDERDFYGNKRFETTGTLMALLFE 383

Query: 402  VHIAHARKRMAKALQRDLYGDRTVRP--IEYYLDA--SILTNGLSRAFSTGAWSHPFKRT 457
              +    + +  A+ + L    + RP  ++  +++   ++ NG+  A S+G W       
Sbjct: 384  DLLKQFNRVVKTAMDQQLSKKDSTRPFNVKQLMESKMEVIQNGMRMAISSGRWDLKRFNM 443

Query: 458  ERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENC 517
             R  GI   L R + + +L  + R     + T KV   R   PS WG +C   TP+GE+C
Sbjct: 444  NR-QGITQVLSRLSYIASLGMMTRLASSFEKTRKVSGPRSLQPSQWGMVCPCDTPEGESC 502

Query: 518  GLVKNLGVTGLVSTSILEPIFEQLFNS-GMEKLADDASYSLGGKFKVFVDGDWIGVCKDS 576
            GLVKN      V+  + +       +S G+E++           + VF++G  IG+ +  
Sbjct: 503  GLVKNFATLSQVTLDLNDNYVRAAAHSLGVEEIDTVTPTDFLHYYTVFLNGTLIGIHRYP 562

Query: 577  LSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIK 630
                + +R  RR   L   V I     Q  V+I  D GRI+R L++V +         + 
Sbjct: 563  NRLCAGIRALRRSGRLHPHVSISTQPRQRTVQIGSDGGRIVRLLIIVRDGKPAVTSAHLD 622

Query: 631  SLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFL 690
             L  +  T    L  G+IE V   E  DC  A           D +P   TH E++   L
Sbjct: 623  RLRDRLCTHNDFLAEGLIEYVDVNESNDCLIAVYPA-------DIRPYT-THLEVEPLSL 674

Query: 691  LGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTM 750
            LG+  GIIP+ +H+ + R  +QS     QA+G    N  IR DT+     YPQRPL RT 
Sbjct: 675  LGVVAGIIPYPHHNQSARNTFQS-AMGKQALGTVALNQYIRADTVLLLGAYPQRPLCRTK 733

Query: 751  ISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHI 810
                          +     L  G NA+V V  + GY+ ED+ V N++SL+RG  R   +
Sbjct: 734  AMS-----------LTHYERLGAGINAMVCVMSYSGYDIEDAQVYNKSSLDRGYGRCVVL 782

Query: 811  RSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKY 870
            R  K EVD   ++       D++   +  S  G+  +L+ DG    G  +Q  D+++ K+
Sbjct: 783  R--KHEVD---LEKYAGGEFDVILPPEKNSGTGKFKALNPDGVASKGVLVQQYDVLVNKF 837

Query: 871  AD-SGAD---HSIKLKHTERGMVQKVVLS-------SNDDGKNFSVVSLRQVRSPCLGDK 919
               +G D     +  K+ +  +V  V++S       S D  +   VV+ R+VR P  GDK
Sbjct: 838  TPVAGGDPRPAPLVYKYPQPAVVDHVIISPPGDYDRSLDVDQKVKVVT-REVRPPEPGDK 896

Query: 920  FSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALG 979
            FSS HGQKGV+G + +  + PF  +G+ PD+++NPH FPSR T G+LLE    K  AAL 
Sbjct: 897  FSSRHGQKGVVGLIVNGVDMPFNERGMCPDMIMNPHGFPSRMTVGKLLELVCSKA-AALR 955

Query: 980  KGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQ 1039
              +  G     T F   S D+I++QL   G++  G +  Y G TGE+++  +F GP +YQ
Sbjct: 956  GSMGDG-----TAFGGDSADSISQQLLSFGYNYHGKDVFYSGITGELMQGYVFFGPIYYQ 1010

Query: 1040 RLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFT 1099
            RL HM  DK+  R+TGP   LTRQP   R R GG++ GEMERDC++ +GA+  L+ERL  
Sbjct: 1011 RLKHMVTDKMHARSTGPRSMLTRQPTEGRSRSGGLRVGEMERDCMVGYGASNLLNERLLI 1070

Query: 1100 LSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQEL 1159
             SD +   IC  C N+          G   R   C  C +     K N+PY  KLL QEL
Sbjct: 1071 SSDMFTADICHVCGNL----------GYNNR---CTYCKTKGTTSKVNMPYAFKLLIQEL 1117

Query: 1160 FSMGITLKF 1168
              MG++L+ 
Sbjct: 1118 QGMGVSLRL 1126


>gi|40643994|emb|CAD90166.1| DNA-directed RNA polymerase II largest subunit [Gardenia sp. Oxelman
            2319]
          Length = 627

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 262/634 (41%), Positives = 367/634 (57%), Gaps = 48/634 (7%)

Query: 511  TPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDW 569
            TP+G+ CGLVKNL +   ++  S   PI E L     E   + +   +    K+FV+G W
Sbjct: 3    TPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIFVNGCW 62

Query: 570  IGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENM--- 626
            +G+ ++    V  LR+ RR+ ++ T+V + RD    E+R++ D GR  RPL +VE     
Sbjct: 63   VGIHRNPDLLVRTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLL 122

Query: 627  ---GKIKSLEGKNYT----FQALLDHGIIELVGTEEEEDCCTAWGIKYLLK---DIEDKK 676
                 I +L+ + YT    +  L+  G IE V TEEEE    +  I  L+    + ++  
Sbjct: 123  IKKKDILALQQREYTDEFGWHDLVAKGYIEYVDTEEEETTMISMTINDLMNSRLNPDEAY 182

Query: 677  PIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLS 736
               +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DTL+
Sbjct: 183  SETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM-GKQAMGMYITNYQLRMDTLA 241

Query: 737  HQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMN 796
            + L+YPQ+PL  T   + L      H   LP      G NA+VA+  + GYNQEDS++MN
Sbjct: 242  YVLYYPQKPLVTTRAMEHL------HFRQLP-----AGINAVVAIACYSGYNQEDSVIMN 290

Query: 797  RASLERGMFRSEHIRSYKAEVDNKEMQVKRR-SSDDMVNFGKIQSKIGRVDSLDDDGFPF 855
            ++S++RG FRS   RSY+ E       VK    S +  N   +  + G  D LD DGF  
Sbjct: 291  QSSIDRGFFRSIFFRSYRDEEKKMGTLVKEEFGSPNREN--TMGMRHGSYDKLDADGFAP 348

Query: 856  IGANLQSGDIVIGKYAD-------------SGADHSIKLKHTERGMVQKVVLSSNDDGKN 902
             G  +   D++IGK                +  DHS  L+H+E G+V +V L++N DG  
Sbjct: 349  PGTRVSGEDVIIGKTTSLPQDEAQGQASRYTRRDHSTSLRHSESGIVDQVALTTNADGLR 408

Query: 903  FSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQT 962
            F  V +R VR P +GDKFSS HGQKG +G   +QE+ P+TI+GI PDI++NPHA PSR T
Sbjct: 409  FVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGISPDIIVNPHAIPSRMT 468

Query: 963  PGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGR 1022
             GQL+E  +GK  A +GK      +  ATPF   +VD I++ LH+ G+   G ER+Y+G 
Sbjct: 469  IGQLIECIMGKVAAHMGK------EGDATPFTDVTVDNISKALHKCGYQMRGFERVYNGH 522

Query: 1023 TGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1082
            TG ++  LIF+GPT+YQRL HM +DK+  R  GPV  LTRQP   R R GG++FGEMERD
Sbjct: 523  TGRIMGDLIFMGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 582

Query: 1083 CLIAHGAAANLHERLFTLSDSYQMHICRKCKNVA 1116
            C+IAHGAA  L ERLF  SD+Y++HIC  C  +A
Sbjct: 583  CMIAHGAAHFLKERLFDQSDAYRVHICEHCGLIA 616


>gi|405122465|gb|AFR97232.1| DNA-directed RNA polymerase [Cryptococcus neoformans var. grubii H99]
          Length = 1123

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 367/1206 (30%), Positives = 550/1206 (45%), Gaps = 181/1206 (15%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQK--AFDSFGETIVEPGYDPSKKGEGEWRYASMRFG 89
            +F    GLV   ++S+N F+   ++   A +S   + + P Y          RY  +R G
Sbjct: 30   AFLKVKGLVKQHLDSFNYFVNVDIKAILAANSLVISDINPKY--------YIRYTDIRVG 81

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
            +      +  A        + P   RL + TYS+ + V V++           + K  ++
Sbjct: 82   RPARHDANQVASA------LSPMECRLTDSTYSAPIYVDVEYM---------GEEKRSKQ 126

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
            + +Q            IG +PVM++SDLC +KG         G+C  D GGYF++KG EK
Sbjct: 127  RGVQ------------IGMLPVMLRSDLCNLKGKNEAELARMGECPMDPGGYFVVKGTEK 174

Query: 204  VFVAQEQICLKRLWV-SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFL 262
            V + QEQ+   R+ V  +     +A  +   +  +++ LVD +        ++V+  Y +
Sbjct: 175  VILVQEQLSKNRILVMKDKKDEVMAEVTSLDQAGILIGLVDSTH-------DRVVKTYVV 227

Query: 263  STE-------------IPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADN 309
            S               IPI I   A+G+++DKEI+ LI   C         F    +   
Sbjct: 228  SKANRLYLRHNSFKEFIPIVIALKAMGLTADKEILQLI---CGSDERYQEAFGVSLEEAA 284

Query: 310  KCDEFRKGRNALKYVDKLIKGTTFPPGESTEEC-MNTYLFPSLHGTKQKA---------R 359
            K   F + R AL+++     G    P ++ ++   N  L PS    +  A         R
Sbjct: 285  KEKTFTR-RQALEWI-----GARVSPNQAKDDSGSNQKLTPSDIAQQALAAMVLGHVPVR 338

Query: 360  FLGYMVKCLLQAYSGRR---------KCDNRDDFRNKRLELAGELL----ERELKVHIAH 406
             + +  KC+  A   RR           D+RD   NKRLELAG+LL    E   K   + 
Sbjct: 339  NMNFRPKCIYLATMSRRVLMAMIDDHMVDDRDYVGNKRLELAGQLLSLLFEDSFKTFNSE 398

Query: 407  ARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVAN 466
             +KRM K L++                   +T    R+ STG WS      ER +G+   
Sbjct: 399  LKKRMDKILEKPNRAGPFDAGTLIRQGGDPITQAFVRSISTGNWSLKRFHVER-AGVTHV 457

Query: 467  LGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVT 526
            L R + +  L  + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL + 
Sbjct: 458  LSRLSFIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALM 517

Query: 527  GLVSTSILE-PIFEQLFNSGMEKLADDASYSL--GGKFKVFVDGDWIGVCKDSLSFVSEL 583
              ++T + E P+ +  F  G+E ++      L   G   V V+G  IGV   +  FV + 
Sbjct: 518  THITTDVPEAPLVKLAFMLGVEDISLVTGNELYRPGVLMVQVNGTLIGVTNMAKRFVRQF 577

Query: 584  RRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE------NMGKIKSLEGKNY 637
            R+ RR   +   V I  +     + I  D GRI RP+++VE          ++ L+    
Sbjct: 578  RKLRRAGRMSEFVSIFINHHHKIIYIASDGGRICRPMIIVEKGRSRVTTEHVRLLKEGKV 637

Query: 638  TFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGI 697
            TF   L  G++E +   EE D   A        +IE+      TH E++   +LG   G+
Sbjct: 638  TFDHFLRAGLVEYLDVNEENDSFIAC----YENEIEEGT----THLEIEPFTILGAVAGL 689

Query: 698  IPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGK 757
            IP+ +H+ + R  YQ      QAIG    N   R+DTL + + YPQ+P+ +T   + +G 
Sbjct: 690  IPYPHHNQSPRNTYQC-AMGKQAIGAIAYNQLNRIDTLLYLMTYPQQPMVKTKTIELIG- 747

Query: 758  PGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEV 817
                +N      +L  GQNA VAV  + GY+ ED+L++NRAS++RG  R   ++      
Sbjct: 748  ----YN------KLPAGQNATVAVMSYSGYDIEDALILNRASVDRGFGRCHVLKKV---- 793

Query: 818  DNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDD-DGFPFIGANLQSGDIVI--------- 867
                M+     S +   +     +      +D  DG    GA +   D++I         
Sbjct: 794  -TTPMRTFHNGSHERTAYPDPPPRPDAYTFVDKADGMTAPGATINQYDVMIHRETPVDTR 852

Query: 868  GKYADSGADHSIKLKH--TERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHG 925
            G  AD+     + + H   E  +V KV+L+  +DG    +++ RQ R P LGDKFSS HG
Sbjct: 853  GGGADTQLYKPMPVTHKTPEPILVDKVMLTEGEDGALIKILT-RQTRRPELGDKFSSRHG 911

Query: 926  QKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSG 985
            QKGV G +  Q + PF  QGIVPDI++NPH FPSR T G+++E   GK       G+ +G
Sbjct: 912  QKGVCGLIVPQADMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELLSGKA------GVVAG 965

Query: 986  LKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMS 1045
              +Y T F    V  +++ L   GFS  G + L  G TG+ + + ++ GP +YQ+L HM 
Sbjct: 966  KLQYGTAFGGSKVVDMSQILIDNGFSYGGKDMLTSGITGQPMEAYVYFGPIYYQKLKHMV 1025

Query: 1046 EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQ 1105
             DK+  R TGP   LTRQP   R + GG++ GEMERDCLI +GA   L ERL   SD+++
Sbjct: 1026 MDKMHARPTGPRANLTRQPTEGRSKDGGLRLGEMERDCLIGYGATQLLLERLMISSDAFE 1085

Query: 1106 MHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
                                             SG  +V   +PY AKLL QEL  M I 
Sbjct: 1086 -------------------------------TQSGKGVVGLTIPYAAKLLIQELMGMNIM 1114

Query: 1166 LKFDTE 1171
             K   E
Sbjct: 1115 PKLCLE 1120


>gi|6606137|gb|AAF19081.1|AF107809_1 DNA-dependent RNA polymerase II RPB140, partial [Peziza quelepidotia]
          Length = 927

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 314/955 (32%), Positives = 480/955 (50%), Gaps = 107/955 (11%)

Query: 201  AEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSE-NKRNRLIVRL-VDMSKFEDIKGG 253
            +EKV +AQE+     + V      +   +    +S   K +RLI  + + M    D +GG
Sbjct: 1    SEKVLIAQERSAANIVQVFKKAPPSPTPFVAEIRSAVEKGSRLISSMQIKMFGKMDSRGG 60

Query: 254  --EKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA--- 307
              + + S   ++ ++IP+ I+F ALGV  D++I+N + +   D  +L++L   + +A   
Sbjct: 61   YGQTIKSTLPYIKSDIPVAIVFRALGVIPDEDILNHVCYDRNDVQMLDMLKPCLEEAFVI 120

Query: 308  ---DNKCDEF-RKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLH----GTKQKAR 359
               +   D   R+G ++    DK ++           E +     P +        +KA 
Sbjct: 121  QKREIALDFIGRRGSSSGVAKDKRVR--------YAREILQKEFLPHISQKEGSETRKAF 172

Query: 360  FLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDL 419
            FLGYMV  +L     R++ D+RD F  KRL+LAG LL    +       K + K LQ+ +
Sbjct: 173  FLGYMVHQMLLCALERKEPDDRDHFGKKRLDLAGPLLAGLFRTLFKKLTKDVYKYLQKCV 232

Query: 420  YGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDL 479
               R    +   + ++ +TNGL  + +TG W    K     +G+   L R     TL  L
Sbjct: 233  ESSREFN-LTLAVKSTTITNGLKYSLATGNWGEQKKAASARAGVSQVLNRYTFASTLSHL 291

Query: 480  RRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIF 538
            R T   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   VS  S  +PI 
Sbjct: 292  RGTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMSYVSVGSPADPII 351

Query: 539  EQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEI 598
            + +    ME L +          K+FV+G W+G+ +D    V  +++ RR+  +  +V +
Sbjct: 352  DFMLQRNMEVLEEYEPSRSPNATKIFVNGVWVGIHRDPGFIVRTIQKLRRQNHIGHEVSL 411

Query: 599  KRDELQSEVRIFMDAGRILRPLLVVEN-------------MGKIKSLEG--------KNY 637
             +D    E +IF DAGRI RPL VV+N                I+ LE         + Y
Sbjct: 412  IQDIRNREFKIFTDAGRICRPLFVVDNDPASPRRGELVLQKHHIEKLEDDKDITDDEQRY 471

Query: 638  TFQALLDHGIIELVGTEEEEDCCTAWGIKYL------------LKDIEDKKPIK------ 679
             +Q L+  G++E +  EEEE        + L             ++I+  + +K      
Sbjct: 472  GWQGLISDGVVEYIDAEEEETVMIVMTPEDLETSRQFHAGYEIQQEIDPAQRVKAAVNKY 531

Query: 680  ---FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLS 736
               +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN   R+DT++
Sbjct: 532  AHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS-AMGKQAMGVFLTNYRERMDTMA 590

Query: 737  HQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMN 796
            + L+YPQ+PL  T   +            L   EL  GQNAIVA+  + GYNQEDS++MN
Sbjct: 591  NILYYPQKPLGTTRSME-----------FLKFRELPAGQNAIVAILCYSGYNQEDSVIMN 639

Query: 797  RASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFI 856
            ++S++RG+FRS   R+Y  +     M V     +       ++ K G  D LDDDG    
Sbjct: 640  QSSIDRGLFRSLFFRTYMDQEKRIGMSVVE-EFEKPTRGNTLRLKHGTYDKLDDDGLVAP 698

Query: 857  GANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGK 901
            G  +   DI+IGK A                +  D S  L+ TE G+V +V++++N +G 
Sbjct: 699  GVRVSGEDIIIGKTAPIAPNQEELGQRTKFHTKRDVSTPLRSTENGIVDQVMVTTNQEGL 758

Query: 902  NFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQ 961
             F  V +R  + P +GDKF+S HGQKG +G     E+ PFT +GIVPD++INPHA PSR 
Sbjct: 759  KFVKVRMRTTKIPQIGDKFASRHGQKGTIGITYRNEDMPFTSEGIVPDLIINPHAIPSRM 818

Query: 962  TPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDG 1021
            T   L+E  L K +++L      G +  ATPF   +VD++++ L   G+   G E +Y+G
Sbjct: 819  TIAHLIECQLSK-VSSL-----RGFEGDATPFTDVTVDSVSKLLREHGYQSRGFEIMYNG 872

Query: 1022 RTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKF 1076
             TG  + + +F+GPT+YQRL HM +DK+  R  GPV  LTRQPV  R R GG++F
Sbjct: 873  HTGRKLVAQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRF 927


>gi|407405022|gb|EKF30242.1| DNA-directed RNA polymerase III subunit, putative [Trypanosoma cruzi
            marinkellei]
          Length = 1128

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 351/1182 (29%), Positives = 546/1182 (46%), Gaps = 131/1182 (11%)

Query: 38   GLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPS 97
            GL++H I S++  I   L++   +     ++   DP           S+R+  + + +P 
Sbjct: 29   GLLNHHIASFDHLINVELKRILLNESNREIKSSIDPD---------FSIRYTNIRVCQPR 79

Query: 98   FFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVL 157
               G G     + P   R +++TY   M V V++              T R++  +  + 
Sbjct: 80   EIVGKGQLPKAVSPHECRTRDLTYRGDMIVDVEY--------------TSRDRNKRPCM- 124

Query: 158  SDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQI 211
                T+I IG IP+M+KS  C + G      V   +C  D GGYFIIKG EKV + QEQ 
Sbjct: 125  ---ETDIKIGTIPIMLKSSSCNLFGKTREELVAMRECPLDPGGYFIIKGVEKVCLVQEQQ 181

Query: 212  CLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWIL 271
               R+ +       +    ++K +  I +          K G  V+       +IPI ++
Sbjct: 182  SKNRVIIEADDNGNIVAHVQSKTHYSISKCS-----VTFKKGRIVMVHRSFKEDIPIVVM 236

Query: 272  FFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGT 331
              ALG+ SD++I   I  T    +  ++LFA    A       +   +AL ++ +  K T
Sbjct: 237  LKALGMESDQQIAQHIGTT---PAFESVLFACFEQA--AALGVKTQDDALHFIGERRKET 291

Query: 332  TF------------PPGESTEECMNTYLFPSLH--------GTKQKARFLGYMVKCLLQA 371
            ++               ++  E +   L   +           + KA ++ +MV+ +++A
Sbjct: 292  SWEVDDAQQRHIQKSKADNAAEFLGNVLLCHIREGQVQRDWNFRHKALYVCFMVRRMIEA 351

Query: 372  YSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRP--IE 429
                   D RD + NKR E  G L+    +  +    + +  A+ + L    T +P  ++
Sbjct: 352  SVDSSLLDERDFYGNKRFETTGTLMGLLFEDVLKQFNRVVKTAMDQQLSKKDTTKPFNVK 411

Query: 430  YYLDA--SILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQ 487
              +++   ++ +G+  A S+G W        R  GI   L R + +  +  + R     +
Sbjct: 412  QLMESKLEVIQSGMRVALSSGRWELKRFNMSR-QGITQVLSRLSYIACIGMMTRLASSFE 470

Query: 488  YTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEP-IFEQLFNSGM 546
             + K+   R   PS WG +C   TP+GE+CGLVKN G+   V+  + +  +     N G+
Sbjct: 471  KSRKISGPRSLQPSQWGMVCPCDTPEGESCGLVKNFGILSQVTLDMDDSFVRAAAHNLGV 530

Query: 547  EKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSE 606
            E++   +S      + VF++G  IG+ +        +R  RR   L   V I  ++ Q  
Sbjct: 531  EEVDSISSREFLNYYTVFLNGTLIGIHRYPNRLCRGVRALRRSGRLHPHVSIAINDRQKS 590

Query: 607  VRIFMDAGRILRPLLVVENM------GKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCC 660
            V+I  D GRI+R  +VV N         +  L     +    L  G++E +   E  DC 
Sbjct: 591  VQIGCDGGRIVRLYIVVNNAKPAVSSAHLDQLSAGQCSINDFLAEGLVEFIDVNEANDCL 650

Query: 661  TAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQA 720
                I    +DIE       TH E++   LLG+  GIIPF +H+ + R  +QS     QA
Sbjct: 651  ----IAVYPRDIETYT----THLEVEPLSLLGVVAGIIPFPHHNQSARNTFQS-AMGKQA 701

Query: 721  IGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVA 780
            +G    N  IR DT+     YPQRPL RT   D           +    +L  G NA+V 
Sbjct: 702  LGTIAYNQYIRTDTVLMLGAYPQRPLCRTKAMD-----------LTHYEKLGAGINAMVC 750

Query: 781  VNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQS 840
            V  + GY+ ED+ V NR SL+RG  R   +R  K EVD     ++R  + +        S
Sbjct: 751  VMSYSGYDIEDAQVYNRCSLDRGYGRCVVLR--KHEVD-----LERLPNGEYEIILPPDS 803

Query: 841  KIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA----DHSIKLKHTERGMVQKVV-LS 895
              G+  +L+ DG    GA ++  DI++ KY    +     + +  K+ +  +V  VV L 
Sbjct: 804  NAGKCKALNSDGIASKGAIVRQFDILVNKYTPVASLEPRPNPLVYKYPQPAVVDHVVILP 863

Query: 896  SNDDGKNFSV-----VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDI 950
              D  ++  V     V  R+VR P  GDKFSS HGQKGV+G +    N PF  +GI PD+
Sbjct: 864  PGDSERSMDVEQKIKVITREVRVPEPGDKFSSRHGQKGVVGLITDGVNMPFNEKGISPDM 923

Query: 951  VINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGF 1010
            ++NPH FPSR T G+LLE    K ++AL      G     T F   + D +  QL R GF
Sbjct: 924  IMNPHGFPSRMTVGKLLELVSSK-VSALTGTFGDG-----TAFGGENADDLGMQLLRNGF 977

Query: 1011 SKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKR 1070
            +  G +  Y G TGE++++ +F GP +YQRL HM  DK+  R TGP   LTRQP   R R
Sbjct: 978  NYHGKDVFYSGITGEIMQAYVFFGPIYYQRLKHMVTDKMHARATGPRSMLTRQPTEGRSR 1037

Query: 1071 FGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVR 1130
             GG++ GEMERDC++ +GA+  L+ERL   SD + +  CR C  +               
Sbjct: 1038 SGGLRVGEMERDCMVGYGASNLLNERLLLSSDLFTVDTCRSCGFLGYC------------ 1085

Query: 1131 GPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTEF 1172
              YC  C++ + +   NVPY  KLL QEL  MGI+ +   +F
Sbjct: 1086 -GYCPYCNTKNTVSHVNVPYAFKLLLQELQGMGISTRLSLDF 1126


>gi|443897388|dbj|GAC74729.1| RNA polymerase III, second largest subunit [Pseudozyma antarctica
            T-34]
          Length = 1158

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 348/1202 (28%), Positives = 549/1202 (45%), Gaps = 163/1202 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I+SYN F+ + L+    +  E I     DP            +++  +
Sbjct: 55   AFLQVKGLVKQHIDSYNYFVDHDLKNIIKA-NEKITS-DIDPK---------FYLKYTDI 103

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
            T+ +P  + G+   +  + P   RL+++TYS+ + V +++              T   + 
Sbjct: 104  TVGEPRRYDGDAL-QRPITPHECRLRDITYSAHIFVNIEY--------------TRGSKI 148

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
            I+++       N+ IGRIPVM++S+ C +         +  +C  D GGYF++KG EKV 
Sbjct: 149  IRRK-------NVAIGRIPVMLRSNKCVLANKSEKELAKMSECPLDPGGYFVVKGTEKVI 201

Query: 206  VAQEQICLKRLWVS-----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVY 260
            + QEQ+   R+ V       ++  +V   +  ++++  V           K G   L   
Sbjct: 202  LVQEQLSKNRIIVEADSKKGTVSASVTSSTHERKSKSYVL---------TKHGRIFLKHN 252

Query: 261  FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNA 320
             L  +IPI I F A+G+ +D+EI+ L+        +   LFA   +   +   + + + A
Sbjct: 253  SLHEDIPIAIAFKAMGIQADREILQLV---AGHDDVYKELFAINLEEAARLGVYTR-KQA 308

Query: 321  LKYVDKLIKGTT------FPPGESTEECMNTYLFPSLH----GTKQKARFLGYMVKCLLQ 370
            L ++    K +        P  E   + + T +   +       + KA ++  MV+ +L 
Sbjct: 309  LDFIGARAKASRKPLSMRRPLAEEALDVLATVIMAHVPVERLNFRPKAIYIACMVRRVLM 368

Query: 371  AYSGRRKCDNRDDFRNKRLELAGELL-----------ERELKVHIAHARKRMAKALQRDL 419
            A    +K D+RD   NKRLELAG+LL             +LK++I    K+  + ++ D 
Sbjct: 369  AMQDEKKVDDRDYVGNKRLELAGQLLALLFEDLFKKFNSDLKLNIDKILKKPNRTVEFDA 428

Query: 420  YGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDL 479
            +        +++ +   +T+G  RA STG WS    + ER +G+   L R + +  L  +
Sbjct: 429  FN-------QFHFNGDYITSGFVRAISTGNWSLKRFKMER-AGVTHVLSRLSYIAALGMM 480

Query: 480  RRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIF 538
             R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +T  ++T + E PI 
Sbjct: 481  TRISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALTTHITTDVEEEPIA 540

Query: 539  EQLFNSGME--KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQV 596
               F  G+E   L   A       F V+++G+ +GV +    FV + RR RR   +   V
Sbjct: 541  RVAFTLGVEDIHLLTGAELYRPDSFVVYLNGNVLGVTRFPQRFVMQFRRLRRAGRISEFV 600

Query: 597  EIKRDELQSEVRIFMDAGRILRPLLV---VENMGKIKSLEGKNYTFQALLDHGIIELVGT 653
             +  +     V I  D GRI RPL+V   V    ++     +     A     II     
Sbjct: 601  SVYTNNHHQTVYIASDGGRICRPLIVVDAVTGQPRVTEDHIRQLKSGAPRHQTIIHNSSR 660

Query: 654  EEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQS 713
            +            + L   +  KP     C      LL   C          + R+  Q 
Sbjct: 661  DRTIHHPRRRRWSHSLSSTQ-PKPKTCLSCLYHSPPLL---C----------SPRLFRQQ 706

Query: 714  QKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYN 773
               + QA G    N   R+DTL + + YPQ P+ +T   + +G             +L  
Sbjct: 707  CAMAKQAQGSIGYNQLERIDTLLYLMVYPQEPMVKTRTIELVGYD-----------KLPA 755

Query: 774  GQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMV 833
            GQNA+VAV    GY+ ED+L++N+ASL+RG  R + ++     +         R +D  V
Sbjct: 756  GQNAMVAVMSFSGYDIEDALLLNKASLDRGFGRCQTMKKSSTVIRKYPNGTHDRLADAPV 815

Query: 834  N--FGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHS------------- 878
            +   GK Q    R D L+ DG   +G  +  GD+ + K     A+ +             
Sbjct: 816  DEATGKRQK---RYDILEADGIAGVGERVDQGDVYVNKQTPVNANDNSSTAIMIGASNAA 872

Query: 879  ---------IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGV 929
                     +  K    G + +V+++  D  +      +RQ R P LGDKFSS HGQKGV
Sbjct: 873  ASVAYKSAPLSYKPPVSGYIDQVLITDTDSDQTLIKALVRQTRRPELGDKFSSRHGQKGV 932

Query: 930  LGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRY 989
             G +  QE+ PF+ +GI PDI++NPH FPSR T G+++E   GK       G+ +G  +Y
Sbjct: 933  CGLIVQQEDMPFSDRGINPDIIMNPHGFPSRMTVGKMIELLSGKA------GVVTGTLQY 986

Query: 990  ATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKV 1049
             T F    V+ ++  L   G++    E L  G TG+ + + ++ GP +YQRL HM +DK+
Sbjct: 987  GTAFGGSQVEDMSRLLVENGYNYAAKETLTSGITGQPLEAYVYFGPIYYQRLKHMVQDKM 1046

Query: 1050 KFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHIC 1109
              R  GP   LTRQP   R R GG++ GEMERDCLI +GA   L ERL   SD++ +H C
Sbjct: 1047 HARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGATQLLLERLMISSDAFTVHAC 1106

Query: 1110 RKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFD 1169
            ++C             G      +C  C S   +V+  +PYG KL+ QEL +M +  +  
Sbjct: 1107 QRC-------------GLMGYNGFCPYCSSSKHVVQLTIPYGTKLMLQELMAMQVVPRLV 1153

Query: 1170 TE 1171
             E
Sbjct: 1154 LE 1155


>gi|45545343|gb|AAS67519.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Phragmidium sp. MB]
          Length = 931

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 320/964 (33%), Positives = 489/964 (50%), Gaps = 121/964 (12%)

Query: 201  AEKVFVAQEQ-----ICLKRLWVSNSMGWTVAYKSENKR-----NRLIVRLVDMSKFEDI 250
            +EKV +AQE+     +C+      + + +    +S  ++     + + V++    K E  
Sbjct: 1    SEKVLIAQERMAANHVCVYAKAAPSPVSFLCEIRSAVEKGSKTISSMQVKMYGGHKAEKA 60

Query: 251  KGGEKV-LSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADN 309
             GG  +  ++ ++  ++PI ++F ALG+  DKEI++ I +   D  +L +L   + D+  
Sbjct: 61   GGGATIKTTLPYIRNDVPIVVVFRALGIIPDKEILDHICYDRNDIGMLEMLKPCLEDSF- 119

Query: 310  KCDEFRKGRNALKYVDKLIKGTTFPPG-----ESTEECMNTYLFPSLHGTK----QKARF 360
                 ++   AL ++ +  +GT+         +  EE +   + P +  ++    +KA F
Sbjct: 120  ---PIQEQEVALDFIGR--RGTSTGLSRERRLQYAEEILQKEMLPHISMSEGQQGKKAYF 174

Query: 361  LGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLY 420
             GYMV  LL A   RR  D+RD F  KRL+LAG LL    ++      K + + LQ+ + 
Sbjct: 175  FGYMVHRLLLAALDRRDLDDRDHFGKKRLDLAGPLLASLFRILFRKLTKDVYRHLQKCVE 234

Query: 421  GDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLR 480
              +    +   + ++ +TNGL  + +TG W    K  +  +G+   L R     TL  LR
Sbjct: 235  MQKPFN-LNAAVKSNTITNGLKYSLATGNWGDQKKAMQAKAGVSQVLNRYTFASTLSHLR 293

Query: 481  RTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFE 539
            R    +   GK+   R  H SHWG +C   TP+G+ CGLVKNL +   +S  S   PI E
Sbjct: 294  RCNTPIGRDGKIAKPRQLHNSHWGMVCPAETPEGQACGLVKNLALMSYISVGSPSAPIVE 353

Query: 540  QLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIK 599
             L   GME L D+ S  +    KVFV+G W GV +     +  ++R RR  ++  +V + 
Sbjct: 354  FLEEWGMESL-DEYSSDMASGTKVFVNGVWQGVHRSPADLLDTIKRLRRCGDIEPEVSVM 412

Query: 600  RDELQSEVRIFMDAGRILRPLLVVENM------------------------GKIKSLEGK 635
            RD  + E+R+F D GR+ RPL +VEN                          +I   EG+
Sbjct: 413  RDVRERELRVFTDGGRVCRPLFIVENQQLLLKKEHVEWLSNGCISASDDPNAEIPEDEGQ 472

Query: 636  NYTFQALLDHGIIELVGTEEEED---CCTAWGIK----YLL------KDIEDKKPIK--- 679
             + +  L+  GI+E +  EEEE    C T   ++    Y L      +  +    +K   
Sbjct: 473  PFGWSQLVARGIVEYLDAEEEETVMICMTPEELEQSREYQLTGQVPREQFDPAARLKGNV 532

Query: 680  ------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVD 733
                  +THCE+  + +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+D
Sbjct: 533  SMYSHTWTHCEIHPAMILGICASIIPFPDHNQSPRNTYQS-AMGKQAMGVYLTNFRMRMD 591

Query: 734  TLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSL 793
            T+++ L+YPQ+PL  T   +            L   EL  GQNAIVA+  + GYNQEDS+
Sbjct: 592  TMANILYYPQKPLATTRSME-----------YLRFRELPAGQNAIVAILCYSGYNQEDSV 640

Query: 794  VMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK------IQSKIGRVDS 847
            +MN++S++RG+FRS + RSY         Q K+  +  M  F K      ++ K G  D 
Sbjct: 641  IMNQSSIDRGLFRSFYYRSYMD-------QEKKAGALSMEEFEKPSRETTLRLKQGTYDK 693

Query: 848  LDDDGFPFIGANLQSGDIVIGKYAD---------------SGADHSIKLKHTERGMVQKV 892
            LD+DG    G  +   DI+IGK A                +  D S+ LK TE G++ +V
Sbjct: 694  LDEDGIINPGTRVSGDDIIIGKTASIPEGSEEMGQRDKSHTKRDVSMPLKSTENGIIDQV 753

Query: 893  VLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVI 952
            ++++N D   F  V +R  R P  GDKF+S HGQKG +G L  QE+ PFT +G+ PDI+I
Sbjct: 754  LITTNSDNLKFVKVRIRSTRIPETGDKFASRHGQKGTVGILYRQEDMPFTSEGVCPDIII 813

Query: 953  NPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSK 1012
            NPHA PSR T G L+E  L K          +G +  ATPF+  +V+AI+  L   G+  
Sbjct: 814  NPHAIPSRMTIGHLVECLLSK------VSTITGNEGDATPFSEVTVEAISSLLKENGYHS 867

Query: 1013 WGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFG 1072
             G E +++G TG  +R+  ++GPT+YQRL HM  DK+  R  GPV  LTRQPV  R R G
Sbjct: 868  RGLEIMFNGHTGRKLRAQCYLGPTYYQRLKHMVNDKIHSRARGPVQILTRQPVEGRSRDG 927

Query: 1073 GIKF 1076
            G++F
Sbjct: 928  GLRF 931


>gi|55831373|gb|AAV66545.1| RNA polymerase II second largest subunit [Fomitiporia mediterranea]
          Length = 898

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 303/895 (33%), Positives = 453/895 (50%), Gaps = 136/895 (15%)

Query: 258  SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG 317
            ++ ++  +IPIW++F ALGV SD++I+  I F   D S+L +L   I D     D     
Sbjct: 37   TIPYIKVDIPIWVVFRALGVISDRDILEHICFDMNDSSMLEMLKPCIDDGFVIQDR---- 92

Query: 318  RNALKYVDKLIKGTTFPPGES---TEECMNTYLFPSLH----GTKQKARFLGYMVKCLLQ 370
              AL ++      T     +     +E +   + P +        +KA F GYM+  LL 
Sbjct: 93   EVALDFIGNRGTATGLNRDKRLRYAQEILQKEMLPHISMAEGSESKKAYFFGYMIHRLLL 152

Query: 371  AYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEY 430
            A   RR+ D+RD F  KRL+LAG LL    ++      K + + LQ+ +   +    I  
Sbjct: 153  AALERRELDDRDHFGKKRLDLAGPLLTGLFRMLFRKLTKDVYRYLQKCVETHKEFN-INM 211

Query: 431  YLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTG 490
             +    LTNGL  + +TG W    K     +G+   L R     TL  LRR    +   G
Sbjct: 212  AIKTQTLTNGLKYSLATGNWGDQKKAMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREG 271

Query: 491  KVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKL 549
            K+   R  H +HWG +C   TP+G+ CGLVKNL +  ++S  S+  P+ + L   G+E L
Sbjct: 272  KIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMAVISVGSVSGPVIDFLEEWGLETL 331

Query: 550  ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRI 609
             ++   +     KVFV+G W+GVC+D L+ V+ LR  RR ++  ++V I RD  + E+RI
Sbjct: 332  EENTQST--NLTKVFVNGVWLGVCRDPLNMVNTLRTLRRMQDFDSEVSIVRDIREREIRI 389

Query: 610  FMDAGRILRPLLVV-----------------------------ENMGKIKSLEG------ 634
            + DAGR+LRPL +V                             E   K +  EG      
Sbjct: 390  YSDAGRVLRPLFIVEDHKLKLKRQHLRWLQEKWRIEERPYVPREERNKEEVSEGETVADE 449

Query: 635  -----------------KNYTFQALLDHGIIELVGTEEEED---CCTAWGI---KYLLKD 671
                             K +T+ +L+  G+IEL+  EEEE    C T   +   + L + 
Sbjct: 450  EEGRPIMRDERRVKRKKKPFTWSSLIRDGVIELLDAEEEETVMICMTPDDLLESRLLRRG 509

Query: 672  IEDK-----------KPI----KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKH 716
            ++ +           KP+     +THCE+  S +LG+   IIPF +H+ + R  YQS   
Sbjct: 510  LDPRAEADFNPAARLKPLPIAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS-AM 568

Query: 717  SSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQN 776
              QA+G   TN  +R DT+++ L+YPQ+PL  T   +            L   EL  GQN
Sbjct: 569  GKQAMGIYLTNFLMRQDTMANILYYPQKPLATTRAME-----------YLKFRELPAGQN 617

Query: 777  AIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVN-F 835
            AIVA+  + GYNQEDS++MN++S++RG+FRS + R+Y        M  ++RS   +V+ F
Sbjct: 618  AIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLYYRTY--------MDQEKRSGAIIVDEF 669

Query: 836  GK------IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---------------DSG 874
             K      ++ K G  D L+DDG    G N++  DI+IGK A                + 
Sbjct: 670  EKPTRDTTLRMKHGTYDKLEDDGLIAPGVNVRGDDIIIGKTAPIPPDSEELGQRTRGHTK 729

Query: 875  ADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLE 934
             D S  LK TE+G+V +VV+++N +G  F  + +R  R P +GDKF+S HGQKG +G   
Sbjct: 730  RDISTPLKSTEQGIVDQVVVTTNAEGTKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITY 789

Query: 935  SQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFA 994
             QE+ PFT +GI PDI+INPHA PSR T G L+E  L K    +G       +  ATPF 
Sbjct: 790  RQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLSKLATIVGN------EGDATPFT 843

Query: 995  TPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKV 1049
              +VD+++  L   G+   G E +Y G TG  +++ +++GPT+YQRL HM +DK+
Sbjct: 844  DLTVDSVSSVLREKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLKHMVDDKI 898


>gi|340052083|emb|CCC46353.1| DNA-directed RNA polymerase I, fragment, partial [Trypanosoma vivax
            Y486]
          Length = 1112

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 353/1194 (29%), Positives = 551/1194 (46%), Gaps = 133/1194 (11%)

Query: 27   RKAAV--SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYA 84
            RK A+  +  N  GL++H + S++  I   L++   +     V+   DP           
Sbjct: 3    RKLALLPALINMRGLLNHHLASFDHLINVELRRILLNESNREVKSSIDPD---------F 53

Query: 85   SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKF 144
            S+R+  + + +P    G G     + P   R +++TY   + V V++             
Sbjct: 54   SIRYTNIRVCQPREIVGKGQLPKPVSPHECRTRDLTYRGDIVVDVEY------------- 100

Query: 145  KTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFII 198
             T R++   K + SD  T+I IG IP+M+KS  C + G      +   +C  D GGYFII
Sbjct: 101  -TSRDR--TKRLCSD--TDIKIGTIPIMLKSSSCNLYGKSREGLIAMRECPLDPGGYFII 155

Query: 199  KGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLS 258
            KG EKV + QEQ    R+ +       +    ++K +  I +          K G  V+ 
Sbjct: 156  KGVEKVCLVQEQQSKNRVIIEADDSDNIVAHVQSKTHYSISKCS-----VTFKKGRVVMV 210

Query: 259  VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGR 318
                  +IPI I+  ALG+ SD++I   I  +    +  ++LFA    A +         
Sbjct: 211  HRSFKEDIPIVIMLKALGMESDQQIAQHIGTS---PAFQSVLFACFEQAASL--GVNTQD 265

Query: 319  NALKYVDKLIKGTTFPPGESTEECM-------------NTYLFPSLHGTKQ-------KA 358
            +AL+++ +  K T +   ++    M             N  L     G  Q       KA
Sbjct: 266  DALQFIGERRKETIWEAEDAQNRHMQKSKADSAADFLANVLLCHIREGEVQRDWNFRHKA 325

Query: 359  RFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRD 418
             ++ +MV+ +++A       D RD + NKR E  G L+    +  +    + +  A+ + 
Sbjct: 326  LYVCFMVRRMIEASIDSSLLDERDFYGNKRFETTGTLMGLLFEDLLKQYNRVVKTAMDQL 385

Query: 419  LYGDRTVRP--IEYYLDA--SILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQ 474
            L    T +P  ++  +++   ++ NG+  A S+G W        R  GI   L R + + 
Sbjct: 386  LSKKDTTKPFNVKQLMESKMEVIQNGMRVALSSGRWELKRFNMSR-QGITQVLSRLSYIS 444

Query: 475  TLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSIL 534
             +  + R     + + K+   R   PS WG +C   TP+GE+CGLVKN  +   V+  + 
Sbjct: 445  CIGMMTRLASSFEKSRKISGPRSLQPSQWGMVCPCDTPEGESCGLVKNFAILSQVTLDMD 504

Query: 535  EP-IFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELP 593
            +  +     N G+E++         G + VF++G  +G+ +        +R  RR   L 
Sbjct: 505  DSFVRAAAHNLGVEEVDCITPSEFLGHYTVFLNGILVGIHRYPSLLCRGVRALRRSGRLH 564

Query: 594  TQVEIKRDELQSEVRIFMDAGRILRPLLVVE------NMGKIKSLEGKNYTFQALLDHGI 647
              V I  ++ Q  V+I  D GRI+R  +VV        +  + SL     T    L  G+
Sbjct: 565  PHVSISLNDRQKSVQIGCDGGRIVRLYIVVREGEPAVTLEHLDSLSAGRCTINDFLAEGL 624

Query: 648  IELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHAR 707
            +E +   E  DC     I    KDIE       TH E++   LLG+  GIIPF +H+ + 
Sbjct: 625  VEFIDVNEANDCL----IAVYPKDIERHT----THLEIEPLSLLGVVAGIIPFPHHNQSA 676

Query: 708  RVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILP 767
            R  +QS     QA+G    N  IR+DT+     YPQRPL R+           G      
Sbjct: 677  RNTFQSAM-GKQALGTIAYNQYIRMDTVLMLGAYPQRPLCRSKAMSLTNYEALG------ 729

Query: 768  RPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRR 827
                  G NA+V V  + GY+ ED+ V NR SL+RG  R   +R ++      E+Q    
Sbjct: 730  -----AGINAMVCVMSYSGYDIEDAQVYNRCSLDRGYGRCVVLRKHEV-----ELQRLPN 779

Query: 828  SSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGAD----HSIKLKH 883
               D +  G     + +  +L+ DG    GA ++  D+++ +Y  + A     + +  K+
Sbjct: 780  GEYDFILPG--DPTVSKHRALNSDGIASKGAIVRQFDVLVNRYTPAAASEPRPNPLIYKY 837

Query: 884  TERGMVQKVVLS-SNDDGKNFSV-----VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQE 937
             +  +V  VV+S   D  ++  V     V  R+VR P  GDKFSS HGQKGV+G +    
Sbjct: 838  PQPAVVDHVVISPPGDSDRSLDVEQKIKVVTREVRIPEPGDKFSSRHGQKGVVGLITDGV 897

Query: 938  NFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPS 997
            N PF   GI PD+++NPH FPSR T G+LLE    K ++AL      G     T FA  +
Sbjct: 898  NMPFNEMGITPDMIMNPHGFPSRMTVGKLLELVSSK-VSALTGKFGDG-----TAFAGDN 951

Query: 998  VDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPV 1057
             + +  +L R GF+  G +  Y G TGE++++ +F GP +YQRL HM  DK+  R TGP 
Sbjct: 952  AEDMGAELVRHGFNYHGKDLFYSGITGELLQAYVFFGPIYYQRLKHMVTDKMHARATGPR 1011

Query: 1058 HPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVAN 1117
              LTRQP   R R GG++ GEMERDC++ +GA+  L+ERL   SD + +  CR C     
Sbjct: 1012 SMLTRQPTEGRSRSGGLRVGEMERDCMVGYGASNLLYERLLLSSDLFTIDACRSC----- 1066

Query: 1118 VIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
                    G      YC  C++ + + + NVPY  KLL QEL  MGI+ +   +
Sbjct: 1067 --------GFMGYSGYCSYCNTKNTVSRVNVPYAFKLLLQELQGMGISTRLSLD 1112


>gi|123487429|ref|XP_001324946.1| DNA-directed RNA polymerase, beta subunit family protein [Trichomonas
            vaginalis G3]
 gi|121907837|gb|EAY12723.1| DNA-directed RNA polymerase, beta subunit family protein [Trichomonas
            vaginalis G3]
          Length = 1142

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 368/1188 (30%), Positives = 569/1188 (47%), Gaps = 143/1188 (12%)

Query: 38   GLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPS 97
            GL+  Q+NS+N+FI++GL K  ++  E I             E     +R+  + +D+P 
Sbjct: 42   GLIKLQLNSFNDFIESGLTKIMNANKEVIF-----------SENPRVYIRYKNIYVDRPK 90

Query: 98   FFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVL 157
                       + P+  RL + TYS  + V   F       V     K+   Q       
Sbjct: 91   I------RNQILTPQMCRLSDETYSGNVLVDYDF-------VNGSTVKSFNNQ------- 130

Query: 158  SDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVFVAQEQI 211
                    I ++P+M++S+ C++            +C +D GGYF+I G E+V   QEQ 
Sbjct: 131  -------CIAKLPIMLQSNRCYLYNASDETFAKYDECRYDPGGYFVINGTERVVHVQEQS 183

Query: 212  CLKRLWVSN--SMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIW 269
               R+ + +  +   T    S    ++  V L+        K     L    LS +IPI+
Sbjct: 184  PYNRILIEHLANGNKTAVVNSSTSTHKTRVELI-------WKKDTLALHHNALSEDIPIF 236

Query: 270  ILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIK 329
            +LF A+GV+SD+E++ L+D T    ++ ++L +S+ +      E      A++ +++ +K
Sbjct: 237  VLFRAMGVTSDQEVIQLVDPTG---AVGHLLMSSLQEIIKL--EISTQDQAIQLIERRLK 291

Query: 330  GTTFPPGESTEECMN-----------TYLFPSLHGT----KQKARFLGYMVKCLLQAYSG 374
              T    ++T E  N           + + P +  T    ++K+ F+G+M + LL +   
Sbjct: 292  FLTITGIDATREERNMKGYKGREFLRSMVLPHIPSTLTDFRRKSVFVGFMTRWLLLSAID 351

Query: 375  RRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRP--IEYYL 432
             R  D RD F NKRLELAGELLE   +         M K + R +   + + P  I   +
Sbjct: 352  PRMIDGRDFFGNKRLELAGELLELLFEDLFKTFNASMQKTVSRTINKSKGIDPSNIAQAM 411

Query: 433  DASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKV 492
             +  +T+GL  A S+G W+    +  R +G+   LGR + LQ +  + R     + T KV
Sbjct: 412  HSETITHGLKYAISSGNWNITRFKMMR-AGVSQLLGRMSYLQFVSMVTRISSHFEKTQKV 470

Query: 493  GDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLAD 551
              AR  +PS +G IC   TP+G  CGL+KN  +T  V+  +   P    L + G+E+L  
Sbjct: 471  AGARLLYPSQFGFICPSDTPEGAQCGLIKNFALTVHVTVWADPAPARRTLLDLGVEELVV 530

Query: 552  DASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFM 611
             +   +   + V ++G+ IG+  D  S     R+ RRR  +     I   E +  + +  
Sbjct: 531  FSGEEISNNYIVMLNGEPIGIIDDPYSICRRFRQVRRRHWVDKFAAIWIVEAKKCINVST 590

Query: 612  DAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGI 665
            +AGR+ RPL++VE+         +  +      F  LLD+GIIE V   E  DC  A+  
Sbjct: 591  EAGRVCRPLIIVEDHKSKLTQELMDQVNRGEINFDYLLDNGIIEYVDVNEMTDCLIAFND 650

Query: 666  KYLLKDIEDKK-------PIK------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQ 712
            K    DIE+++       P+       FTH E+  + +LG+  G++P  +H+ + R  YQ
Sbjct: 651  K----DIEEERKNCVNDPPLAKGELRYFTHLEIHNAQMLGVCAGVVPCPHHNQSPRNTYQ 706

Query: 713  SQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELY 772
                  QAIG    N   RVD  ++   YPQ+P+ +T              H +P     
Sbjct: 707  C-AMGKQAIGPTALNIMHRVDKSTYFNCYPQQPMVQTRTIRL------SRYHEMP----- 754

Query: 773  NGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQV--KRRSSD 830
             GQNA+VA+  + G++ ED+L+MN+ASL+RG  R  ++      + N +  V   R +  
Sbjct: 755  CGQNAMVAIMSYSGHDIEDALLMNKASLDRGFGRRYYLSKLDLMLKNYQGGVIGDRIAPL 814

Query: 831  DMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHS-IK-LKHTER-- 886
            D      I S   +   LD DG    G  ++ G I   KY     + S +K +    R  
Sbjct: 815  DRERPENIASP--QYSLLDADGIIRPGERIEKGMIYANKYVPLNFEESPVKFMAQPARYN 872

Query: 887  ---GMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTI 943
                M+Q V + + +  +   + +    R P LGDKFSS HGQKGV+G +  QE+ P+T 
Sbjct: 873  YYPVMIQNVSVYTTETTQVIKIKT-ADFRRPELGDKFSSRHGQKGVIGLIVPQEDMPYTE 931

Query: 944  QGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITE 1003
             GI PD+++NPH FPSR T G+++E   GK       GI +G     T F++  V  I +
Sbjct: 932  DGICPDMIMNPHGFPSRMTVGKMIELVSGK------VGILTGRIGNGTAFSSDRVKDIAD 985

Query: 1004 QLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQ 1063
             L  AG+S  G + L  G TGE + + IF GP FYQ L HM +DK++ R TG V  LTRQ
Sbjct: 986  DLIAAGYSYSGKDMLMSGITGEPLYAYIFFGPVFYQSLKHMVKDKMQARATGQVQYLTRQ 1045

Query: 1064 PVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVV 1123
            P   R R GG++ GEMERDCLI +GAA+ L+ER+   SD Y+ ++C KC           
Sbjct: 1046 PTQGRSRQGGMRLGEMERDCLIGYGAASILYERMLISSDVYEANVCAKC----------- 1094

Query: 1124 GGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
             G     G YC  C + + +    +PY  KLL  EL +MGI  K   E
Sbjct: 1095 -GFIGYEG-YCTHCKTKEYMKIVRMPYACKLLFYELMAMGIAPKVRLE 1140


>gi|55273993|gb|AAV48867.1| RNA polymerase II second largest subunit [Armillaria mellea]
          Length = 884

 Score =  454 bits (1169), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 296/860 (34%), Positives = 452/860 (52%), Gaps = 104/860 (12%)

Query: 258  SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG 317
            ++ ++  +IPIW++F ALGV SD++I+  I +  +D  +L +L   I D     D     
Sbjct: 60   TIPYIKVDIPIWVVFRALGVISDRDILEHICYDMQDAQMLEMLKPCIDDGFVIQDR---- 115

Query: 318  RNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLHGTK----QKARFLGYMVK 366
              AL ++    +GTT   G S E       E +   + P +  ++    +KA F GYM+ 
Sbjct: 116  EVALDFIGN--RGTT--TGLSRERRIRYAQEILQKEMLPHVSMSEGSESKKAYFFGYMIH 171

Query: 367  CLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR 426
             LL A   RR+ D+RD     RL+LAG LL    ++      + + + LQ+ +   +   
Sbjct: 172  RLLLAALERRELDDRDHLGKNRLDLAGPLLANLFRMLFRKFNRDVYRYLQKCVETHKEFN 231

Query: 427  PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
             +   +    +TNGL  + +TG W    K     +G+   L R     TL  LRR    +
Sbjct: 232  -VSVGVKHQTITNGLKYSLATGNWGDQKKSMSSKAGVSQVLNRYTYASTLSHLRRCNTPL 290

Query: 487  QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSG 545
               GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  S   P+ E L   G
Sbjct: 291  GREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSAPVIEFLEEWG 350

Query: 546  MEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQS 605
            +E L ++A +S     KVFV+G W+GV +D  + V  +++ RR+ ++  +V + RD  + 
Sbjct: 351  LETLEENA-HSATPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIREK 409

Query: 606  EVRIFMDAGRILRPLLVVENM------GKIKSL------EGKNYTFQALLDHGIIELVGT 653
            E+R++ DAGR+ RPL +VEN         IK L      +G+ Y ++ L+  G+IEL+  
Sbjct: 410  ELRLYTDAGRVCRPLFIVENQQLVLQKKHIKWLVRGTNDDGEEYKWEQLIKGGVIELLDA 469

Query: 654  EEEEDCCTAWGIKYLLKDIEDKKPIK--------------------------FTHCELDM 687
            EEEE       I    +D+E+ +  +                          +THCE+  
Sbjct: 470  EEEETVM----ISMTPEDLENSRLQQSGVDIHANDGDFDPAARLKAGINAHTWTHCEIHP 525

Query: 688  SFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLF 747
            S +LG+   IIPF +H+ + R  YQS     QA+G   TN  IR+DT+++ L+YPQ+PL 
Sbjct: 526  SMILGICASIIPFPDHNQSPRNTYQSAM-GKQAMGIYLTNFLIRMDTMANILYYPQKPLA 584

Query: 748  RTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRS 807
             T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG+FRS
Sbjct: 585  TTRSME-----------YLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRS 633

Query: 808  EHIRSY-KAEVDN--KEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGD 864
             + RSY   E +N    M+V  +   +      ++ K G  D L+DDG    G  +   D
Sbjct: 634  IYYRSYMDVEKNNGIHSMEVFEKPMRE----STLRMKHGTYDKLEDDGLIAPGTGVVGED 689

Query: 865  IVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLR 909
            I+IGK A                +  D S  LK+TERG+V +V++++N +G+ F  V +R
Sbjct: 690  IIIGKTAPIPPESEELGQRTRMHTRRDVSTPLKNTERGIVDQVLVTTNYEGQKFVKVRVR 749

Query: 910  QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEA 969
              R P +GDKF+S HGQKG +G    QE+ PFT +GIVPDI+INPHA PSR T G L+E 
Sbjct: 750  STRIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIGHLVEC 809

Query: 970  ALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRS 1029
             L K    +G       +  ATPF   +V++++  L + G+   G E +Y G TG  +++
Sbjct: 810  LLSKVATLIGN------EGDATPFTDLTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQA 863

Query: 1030 LIFIGPTFYQRLIHMSEDKV 1049
             +++GPT+YQRL HM +DK+
Sbjct: 864  QVYLGPTYYQRLKHMVDDKI 883


>gi|389585547|dbj|GAB68277.1| DNA-directed RNA polymerase III subunit [Plasmodium cynomolgi strain
            B]
          Length = 1300

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 363/1216 (29%), Positives = 553/1216 (45%), Gaps = 220/1216 (18%)

Query: 88   FGQVTLDKPSFFAGNGGDEHDMF-----PRHARLQNMTYSSRMKVKVQFQVYTQKRVTSD 142
            FGQ   +KP+   G    E +M      P+  R +++TYS+ + V V++           
Sbjct: 157  FGQFRENKPN---GRPSVEENMIETSLTPQICRQRDLTYSAPIYVDVEY----------- 202

Query: 143  KFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYF 196
                     I+K        N+ IGR+PVM++SD+C +        ++ G+C +D GGYF
Sbjct: 203  ---VKGSNIIRK-------NNVEIGRLPVMLRSDICILHNKSEEELMKLGECPYDPGGYF 252

Query: 197  IIKGAEKVFVAQEQICLKRLWVS-----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIK 251
            I+KG E+V + QEQ+   R+ V      N      +  +E+K    IV           K
Sbjct: 253  IVKGTERVLLMQEQLSKNRIIVEMDIKHNICATITSTTAESKSRCAIV----------YK 302

Query: 252  GGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKC 311
              +  L       +I + I+  A+G  SD+EI  +I       + LN +  S+++     
Sbjct: 303  NNKLYLKHNSFIEDIGVCIILRAMGYESDQEIFQMIG---SHRNYLNGILLSLYEL--YS 357

Query: 312  DEFRKGRNALKYVDKLIKGTTFPPG-----------------ESTEECMNTYLFPSL--- 351
            +  +   +AL Y+ K I+      G                 E   + ++  L   +   
Sbjct: 358  ENIKTNLDALLYIGKKIRPRLLAKGFFSSMKEKQVKNEKDIIEEGLDFLSRVLLSHIQQK 417

Query: 352  --HGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIA 405
              +  + KAR +  M++ +L + + + + D++D + NKRLELAG+L+    E   K    
Sbjct: 418  NKYDFRNKARCICLMIRRVLDSANNKNELDDKDYYGNKRLELAGQLISLLFEDLYKRFYF 477

Query: 406  HARKRMAKALQRDLYGDRTVRPI------EYYLDA------SILTNGLSRAFSTGAWSHP 453
              +K++ + L + +  + T +        E Y D        I+T G+  A STG W+  
Sbjct: 478  TLKKQIDQTLSKYMQSNYTSKLKYSGNINETYPDVFRSLPKDIITRGMQAAISTGNWNIK 537

Query: 454  FKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPD 513
              + E+ SG+   L R + +  +  + R   Q +   KV   R   PS WG +C   TP+
Sbjct: 538  RFKMEK-SGVSQVLSRLSFIACIGMMTRLNSQFEKGRKVSGPRALQPSQWGVLCPCDTPE 596

Query: 514  GENCGLVKNLGVTGLVSTSIL--EPIFEQLFNSGME---KLADDASYSLGGKFKVFVDGD 568
            GE+CGLVKNL +   V+      E + E L+  G+E    L  +  Y  G  F +F +G 
Sbjct: 597  GESCGLVKNLALMTHVTNDNENNEHLIEILYTLGVEDSDSLTGEEMYKEGIFFVIF-NGI 655

Query: 569  WIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK 628
             +GV K   +F+  +R  RR  ++   V I  + L + + I  D GR+ RPL++VEN GK
Sbjct: 656  LLGVHKKPRTFMRRIRCLRRYGKIGQFVSIYDNFLHNAIYISTDGGRLCRPLIIVEN-GK 714

Query: 629  -------IKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFT 681
                   I SLE     F  LL   +IE +   E+ +   A          E    +  T
Sbjct: 715  SKLSQEHIVSLENGTINFFDLLKSSVIEWIDVNEQNNLLIALN--------ESDISVNTT 766

Query: 682  HCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFY 741
            H E+D   +LG+  G+IP+ NH+ + R  YQ      QAIG    N  +R DTL + L Y
Sbjct: 767  HLEIDPLTILGVVAGLIPYPNHNQSPRNTYQCA-MGKQAIGAIGYNQFVRCDTLLYLLVY 825

Query: 742  PQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLE 801
            PQ+PL ++   +            +   +L  GQNAIVAV    GY+ ED++VMN++S++
Sbjct: 826  PQKPLVKSKTIE-----------FINFEKLPAGQNAIVAVMSFCGYDIEDAIVMNKSSID 874

Query: 802  RGMFRSEHIRSYKAEV--------------------------------DNKEMQVKRRSS 829
            RG  R   +R +  E+                                  ++ Q K+R +
Sbjct: 875  RGFGRCMSLRKHAVELKKYFNGSNDLVLPSPLAISKLQQRQEKERQEKQERQRQEKQRQA 934

Query: 830  D---------------DMVNFG---------KIQSK-IGRVDSLDDDGFPFIGANLQSGD 864
                            D V  G         + Q+K I +  +LD DG   IG  L+ G 
Sbjct: 935  QEDQLAATGQYIKEEGDHVENGTDTNGDEPKRFQNKEIKKYHALDVDGVVSIGYLLKEGQ 994

Query: 865  IVIGKYADSGA-DH---------------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSL 908
            + I KY+     DH                +K K      + K++ + N +G     + +
Sbjct: 995  VYINKYSPRNVKDHVKDISKIDLNDLKSNEVKYKSVYPSYIDKIIFTENAEGLKIYKIIM 1054

Query: 909  RQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLE 968
            RQ R P LGDKFSS HGQKGV+G L +QE+ PFT  GI PD+++NPH FPSR T G+LLE
Sbjct: 1055 RQTRLPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGFPSRMTVGKLLE 1114

Query: 969  AALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVR 1028
                  + A    +  G  +Y + F+    + +   L + GF+    E LY G TGE + 
Sbjct: 1115 ------LVASKSAVLDGELKYGSIFSGTPFEEMASILFKYGFNCSSKELLYSGLTGEPLE 1168

Query: 1029 SLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHG 1088
            + IF+GP +YQ+L HM +DK+  R  GP   LTRQP   R + GG++ GEMERDCLIA+G
Sbjct: 1169 TYIFMGPIYYQKLKHMVQDKIHARARGPRQLLTRQPTEGRSKEGGLRLGEMERDCLIAYG 1228

Query: 1089 AAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANV 1148
             +  L ERL   SD   ++IC  C             G      YC  C   D      +
Sbjct: 1229 VSNLLLERLMLSSDVCDVYICEDC-------------GMMGYDTYCTFCQKCDKNALVKM 1275

Query: 1149 PYGAKLLCQELFSMGI 1164
            PY  KLL QEL +M +
Sbjct: 1276 PYACKLLFQELQTMNV 1291


>gi|367054822|ref|XP_003657789.1| hypothetical protein THITE_2123824 [Thielavia terrestris NRRL 8126]
 gi|347005055|gb|AEO71453.1| hypothetical protein THITE_2123824 [Thielavia terrestris NRRL 8126]
          Length = 1048

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 355/1125 (31%), Positives = 527/1125 (46%), Gaps = 155/1125 (13%)

Query: 115  RLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVK 174
            RL++MTY++ + V + +    +K +  D                     I + RIPVM+K
Sbjct: 4    RLRDMTYAAPVVVDIAYSRDRKKIIRRD---------------------IPLCRIPVMLK 42

Query: 175  SDLCWMKGVEKG------DCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVS----NSMGW 224
            S  C + G          +C  D GGYFII G EKV + QEQ+   R+ V       +  
Sbjct: 43   SAKCCLSGATNAQMEIMNECPLDPGGYFIINGTEKVILIQEQLSKNRVIVEADDKGGVSA 102

Query: 225  TVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIV 284
            +V   +  ++++  V L         K     L+   L   IPI I+  ALG  SD EI+
Sbjct: 103  SVTSSTHERKSKTYVIL---------KKDRIALNHNVLVEPIPIVIVLKALGGLSDYEIM 153

Query: 285  NLI---DFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIK--------GTTF 333
             L+   D   +D  ++N       D   K   + + + AL+Y+   +K          T 
Sbjct: 154  ELVAGGDARYQDDFLINF------DEATKAGVYTQ-QQALEYIGVRVKMGGPKKGRPGTA 206

Query: 334  PPGESTEECMNTYL-FPSLHGTKQ------KARFLGYMVKCLLQAYSGRRKCDNRDDFRN 386
            P     EE ++        H T +      KA ++  MV+ +L A    +  D+RD   N
Sbjct: 207  PRRSPVEEGLDALANIIIAHVTIEDLDFYPKAIYIAMMVRRVLMAAHNPKLVDDRDFVGN 266

Query: 387  KRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDRT-----VRPIEYYLDASIL 437
            KRLELAG+LL    E   K+ +A  +  M    ++    +RT     V PI        +
Sbjct: 267  KRLELAGQLLSLLFEDLFKMFVASLKGNMEYFFKKP---NRTSAYDPVGPIS--TQGQSI 321

Query: 438  TNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARY 497
            T GL+RA  +G W+       R +G+   L R + +  +  + R   Q + T KV   R 
Sbjct: 322  TQGLNRAIQSGNWNVKRFNMNR-AGVTHVLSRLSYIAVVGMMTRISSQFEKTRKVSGPRA 380

Query: 498  PHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFN--SGME--KLADD 552
              PS WG +C   TP+GE CGLVKNL +   ++T+  E P+   +F    G++  ++   
Sbjct: 381  LQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTNAEEQPVRNWIFGLIEGVQPIRMFTG 440

Query: 553  ASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMD 612
                  G + + ++G    + +    F +  +  RRR  +   V I  +E  S + I  D
Sbjct: 441  TEMHKPGTYIIHLNGTPFALTRHPKQFAARFKTMRRRGHISPFVSIHINEHFSAIHIATD 500

Query: 613  AGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGI 665
             GRI RP ++V++ GK       ++ L+    TF+  L  G+IE +   EE D   A   
Sbjct: 501  EGRICRPYIIVKD-GKSKLKPEHLRLLQLGKATFEDFLKRGVIEYLDVNEENDALIAIS- 558

Query: 666  KYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPT 725
                   ED      TH E++   +LG   G+IPF +H+ + R  YQ      QAIG   
Sbjct: 559  -------EDDINQSTTHLEIEPFTILGAVAGLIPFPHHNQSPRNTYQCAM-GKQAIGAIA 610

Query: 726  TNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHL 785
             N   R+DTL + L YPQRP+  T     +      H   LP      GQNA V V  + 
Sbjct: 611  YNQFNRIDTLLYTLVYPQRPMVITKTIQLI------HYDKLP-----AGQNATVVVMSYS 659

Query: 786  GYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQS--KIG 843
            GY+ ED+LV+N+AS +RG  R +  R Y AE+    +Q      D +    K +    I 
Sbjct: 660  GYDIEDALVLNKASCDRGFGRCQVFRKYAAEL----LQYPNGRKDRLGGIQKDEEGRTIA 715

Query: 844  RVDSLDDDGFPFIGANLQSGDIVI-----------GKYADSGADH----SIKLKHTERGM 888
            +   LD DG   +G  + SG+ +I           G  +D G+D      +  +  +   
Sbjct: 716  KHACLDKDGLAIVGYRVHSGETMIMKETPIDQTSTGIGSDRGSDDFRPAPVNYRTPDPAY 775

Query: 889  VQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVP 948
            + KV++S+ +       V  RQ R P LGDKFSS HGQKGV+G +  QE+ PF+  G+VP
Sbjct: 776  IDKVMVSNTEKDTAIIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVDQEDMPFSDSGVVP 835

Query: 949  DIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYA--TPFATPSVDAITEQLH 1006
            DI++NPH FPSR T G+L E   GK        + +G + Y     F +  V+ +   L 
Sbjct: 836  DIIMNPHGFPSRMTVGKLFECLTGKA------AVVAGRRDYGFGDAFRSHPVEEMGRVLV 889

Query: 1007 RAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVA 1066
              GFS  G +    G TG+   + +F GP +YQRL HM +DK+  R++GP   LTRQP  
Sbjct: 890  EHGFSWEGKDYFTSGITGDPHEAYLFNGPIYYQRLKHMVQDKMHSRSSGPRAILTRQPTE 949

Query: 1067 DRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGG 1126
             R R GG++ GEMERDCLIA+GA+  L ERL   SD+ ++ IC  C            G 
Sbjct: 950  GRSRDGGLRLGEMERDCLIAYGASQLLLERLMYSSDATRVDICEWC------------GL 997

Query: 1127 RKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
               +G YC+ C S   + +  +PY AKLL QEL SM + ++ + E
Sbjct: 998  LGYKG-YCQTCKSTSQVTQMTMPYAAKLLVQELISMNVGVRIELE 1041


>gi|336272055|ref|XP_003350785.1| hypothetical protein SMAC_02456 [Sordaria macrospora k-hell]
          Length = 1117

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 357/1151 (31%), Positives = 536/1151 (46%), Gaps = 160/1151 (13%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW-RYASMRFGQ 90
            +F    GLV   I+SYN F+   ++    +    +V    DP+      W  +  +R G 
Sbjct: 37   AFLKVKGLVKQHIDSYNYFVNEEIKDIVKA--NRVVRSDQDPNF-----WLEFRDIRVGM 89

Query: 91   VTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQ 150
             T  +      +G       P   RL+++TY++ ++V + +        T DK    R+ 
Sbjct: 90   PTRTE------DGEQVQSRNP--CRLRDLTYAAPVEVDIAY--------TRDKSVIVRK- 132

Query: 151  YIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG------DCDFDHGGYFIIKGAEKV 204
                        NI + RIPVM+KS  C++ G          +C  D GGYF+I G EKV
Sbjct: 133  ------------NIPLCRIPVMLKSAKCYLNGATNAQMEVFNECPLDPGGYFVIGGTEKV 180

Query: 205  FVAQEQICLKRLWVSNS------MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLS 258
             + QEQ+   R+ V         M    +   E K    +V          +K    VL 
Sbjct: 181  ILIQEQLSKNRIIVEADEKTGGVMASVTSSTHERKSKTYVV----------LKKDRIVLQ 230

Query: 259  VYFLSTEIPIWILFFALGVSSDKEIVNLI---DFTCEDCSILNILFASIHDADNKCDEFR 315
               LS  IPI I+  A G  SD +I+ L+   D   +D  ++N       D   +   + 
Sbjct: 231  HNTLSEPIPIVIVLKAFGGLSDNDIIELVCGGDARYQDDFLINF------DEAGRAGVYT 284

Query: 316  KGRNALKYVDKLIKGT-------TFPPGESTEECMNTYL-FPSLHGTKQ------KARFL 361
            + + AL+YV   +K           P     EE ++        H T +      KA ++
Sbjct: 285  Q-QQALEYVGARVKMGGNRPKFGAAPRRNHAEEGLDALANLVIAHVTVEGLDFYPKAVYI 343

Query: 362  GYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKR 410
              MV+ +L A    +  D+RD   NKRLELAG+L+             ++K +I +  K+
Sbjct: 344  AMMVRRVLMAAQNPKLVDDRDFVGNKRLELAGQLISLLFEDLFKKFISDVKYNIDNFFKK 403

Query: 411  MAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRA 470
              +    D +G           +   +++GL+RA  +G W+       R +GI   L R 
Sbjct: 404  PNRTSTYDPHG-------AIMANGHYISHGLNRAIQSGNWTVKRFNMNR-AGITHVLSRL 455

Query: 471  NPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVS 530
            + +  L  + R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++
Sbjct: 456  SYIAALGMMTRISSQFEKTRKVSGPRALQPSQWGMLCTSDTPEGEACGLVKNLALMTHIT 515

Query: 531  TSILEPIFEQLFNSGMEKLADDASYS-----LGGKFKVFVDGDWIGVCKDSLSFVSELRR 585
            T++ E   +++  +  E +     Y+       G + + ++G    V ++   F +  R 
Sbjct: 516  TNVPEEPVKKMIFAADESVGPIREYTGTEMHSKGSYIIHLNGTPFAVTREPKRFAARFRT 575

Query: 586  KRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYT 638
             RRR  +   V I  +E  S V I  D GRI RP ++V+N GK       +K L+    T
Sbjct: 576  LRRRGWVSPFVSIHINEHFSAVHIATDEGRICRPYIIVKN-GKSMLKAEHLKMLQLGQAT 634

Query: 639  FQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGII 698
            F   L  G++E +   EE D   A          ED+     TH E++   +LG   G+I
Sbjct: 635  FDTFLTSGVVEYLDVNEENDTLVALQ--------EDQITNSTTHMEIEPFTILGAVAGLI 686

Query: 699  PFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKP 758
            PF +H+ + R  YQ      QAIG    N   R+DTL + L YPQRP+  T     +   
Sbjct: 687  PFPHHNQSPRNTYQCAM-GKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVITKTIQLI--- 742

Query: 759  GYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVD 818
               H   LP      GQNA V V  + GY+ ED+LV+N+ASL+RG  R +  R Y AE+ 
Sbjct: 743  ---HYDKLPA-----GQNATVVVMSYSGYDIEDALVLNKASLDRGFGRCQVFRKYTAELQ 794

Query: 819  NKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVI----------- 867
                  + R    M +  +    I +   LD DG   +G+ ++SG  +I           
Sbjct: 795  GYTNGRRDRVGGIMKD--EDDKPIAKHAILDADGLAQVGSKVESGQTMIKKETPLDQIST 852

Query: 868  GKYADSGADH----SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSM 923
            G   D G+D     S   + ++  ++ KV++S N+       V  RQ R P LGDKFSS 
Sbjct: 853  GIAGDRGSDDYRDASTNYRISDPAIIDKVMISVNERENKLIKVQTRQTRRPELGDKFSSR 912

Query: 924  HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGIC 983
            HGQKGV+G + ++E+ PF+ +G+ PDI++NPH FPSR T G+L E   GK        + 
Sbjct: 913  HGQKGVVGIIVNEEDMPFSDKGLRPDIIMNPHGFPSRMTVGKLFECLTGKA------SVI 966

Query: 984  SGLKRYA--TPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRL 1041
            +G K Y     F +  V+++ + L   GFS  G +    G TGE + + I+ GP FYQRL
Sbjct: 967  AGEKDYGFGDAFRSHPVESMGQALIDHGFSWEGKDYFTSGITGEPMEAYIYNGPIFYQRL 1026

Query: 1042 IHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLS 1101
             HM +DK+  R+ GP   LTRQP   R R GG++ GEMERDCLIA+GA+  L ERL   S
Sbjct: 1027 KHMVQDKMHSRSRGPRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMISS 1086

Query: 1102 DSYQMHICRKC 1112
            D  ++ +C++C
Sbjct: 1087 DGTELDVCQEC 1097


>gi|391870940|gb|EIT80109.1| RNA polymerase III, second largest subunit [Aspergillus oryzae 3.042]
          Length = 1008

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 333/1079 (30%), Positives = 518/1079 (48%), Gaps = 152/1079 (14%)

Query: 169  IPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNS- 221
            +PVM++S  C +      +      C  D GGYFI+ G EKV + QEQ+   R+ V    
Sbjct: 1    MPVMLRSSKCVLSDKTPAEMTVLDECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVETDP 60

Query: 222  -----MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALG 276
                      +  +E K    IV          +K  +  +    LS +IPI IL  A+G
Sbjct: 61   KKEIVQASVTSSSNERKSKSYIV----------LKKDKLYVKHNVLSEDIPIVILLKAMG 110

Query: 277  VSSDKEIVNLI----DFTCEDCSI----------------LNILFASIHDADNKCDEFRK 316
            + +DKE++ L+        ED +I                L+ + + I     K + +R+
Sbjct: 111  IHTDKEMLLLVAGIDKVYQEDFAINFEEAIKLGIYTQQQALDWIGSRIKINRGKQNNYRR 170

Query: 317  GRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRR 376
                  +V + +        E+    + +++       + KA ++ +M + +L A +   
Sbjct: 171  -----THVQEAV--------EAIASVIISHIEVKDMNFRPKAVYVAHMARRVLMAKNDPS 217

Query: 377  KCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYL 432
              D+RD   NKRLELAG+LL    E   K      +  + K L +    +         +
Sbjct: 218  LVDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDIKMNVDKVLNKRNRAEAFDAWTVMSM 277

Query: 433  DASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKV 492
             ++ +T G++RA STG WS    R ER +G+   L R + +  L  + R   Q + T KV
Sbjct: 278  HSNHITQGMNRAISTGNWSLKRFRMER-AGVTHVLSRLSYIAALGMMTRISSQFEKTRKV 336

Query: 493  GDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKLAD 551
               R   PS +G +C   TP+GE CGLVKNL +   ++T+  E PI   +F  G E ++ 
Sbjct: 337  SGPRALQPSQFGMLCLADTPEGEACGLVKNLALMTHITTNDEEGPIRNLIFMLGAEDIS- 395

Query: 552  DASYSLGGK-------FKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQ 604
                +LGGK       + + ++G  + + +   SF++  RR RR   +   V I  +  Q
Sbjct: 396  ----TLGGKELYGPGCYTISINGTPMALTRRPKSFLNAFRRLRRMGRISEFVSIYINHHQ 451

Query: 605  SEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGIIELVGTEEEE 657
              V +  D GRI RPL+VVEN GK       +K L     +F   L  G++E +   EE 
Sbjct: 452  RAVHVATDDGRICRPLIVVEN-GKNRVRSHHLKKLREGTMSFDDFLAQGLVEYLDVNEEN 510

Query: 658  DCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHS 717
            D   A       KDI +      TH E++   +LG   G+IP+ +H+ + R  YQ     
Sbjct: 511  DSLIA----IYEKDITEAT----THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQC-AMG 561

Query: 718  SQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNA 777
             QAIG   +N  +R+D++ + + YPQ+P+ ++   +           +    +L  G NA
Sbjct: 562  KQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIE-----------LTKYDQLPAGHNA 610

Query: 778  IVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDN-----KEMQVKRRSSDDM 832
            +VAV  + GY+ ED+LV+N+ S++RG  R +  +   A + +     K++ +     +D 
Sbjct: 611  MVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFKKSVANLKSYSNGTKDILMPPEYDND- 669

Query: 833  VNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADS--------GADHSIKLKHT 884
                   + I +   L+ DG   +G  + +G++ I K            G+D    +K+T
Sbjct: 670  -------APIRKHALLESDGLAAVGEQVNAGEVYINKSTPDQSLASGFPGSDMGRPVKYT 722

Query: 885  ERGM---------VQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLES 935
               M         + +V++S+ ++      V  RQ R P +GDKFSS HGQKGV+G +  
Sbjct: 723  PTPMTYKLHDPAYIDQVLVSTTENENQLIKVLTRQTRRPEVGDKFSSRHGQKGVVGIIAD 782

Query: 936  QENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFAT 995
            Q + PFT QGI PDI++NPH FPSR T G++LE   GK       G+ +G   Y T F  
Sbjct: 783  QADMPFTDQGINPDIIMNPHGFPSRMTVGKMLELVAGKA------GVLAGQHGYGTCFGG 836

Query: 996  PSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTG 1055
              V+ +++ L   GFS  G + L  G TGE +   +F GP +YQ+L HM +DK+  R  G
Sbjct: 837  SPVEEMSQILIDKGFSYGGKDYLTSGITGEALPFYVFTGPIYYQKLKHMVQDKMHSRARG 896

Query: 1056 PVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNV 1115
            P   LTRQP   R R GG++ GEMERDCLIA+G +  L ERL   SD +++ +C +C  +
Sbjct: 897  PRAILTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEIDVCEQCGFM 956

Query: 1116 ANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT--LKFDTEF 1172
              +              +C+ C S   +VK  +PY AKLL QEL SM +T  LK + EF
Sbjct: 957  GYL-------------NWCQRCKSSRSVVKMAIPYAAKLLIQELMSMNVTARLKLEDEF 1002


>gi|83415497|gb|ABC17956.1| RNA polymerase II second largest subunit, partial [Rozella allomycis]
          Length = 697

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 275/718 (38%), Positives = 399/718 (55%), Gaps = 50/718 (6%)

Query: 387  KRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFS 446
            KR++LAG LL    ++      K + K LQ+ +  +R    +   + ++ +TNGL  + +
Sbjct: 2    KRMDLAGPLLAGLFRMLFRKLTKDVGKYLQKCIDSNRDFN-LTLAVKSNTITNGLRYSIA 60

Query: 447  TGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKI 506
            TG W    K  E  +G+   L R     TL  LRR    +   GK+   R  H SHWG +
Sbjct: 61   TGNWGDQKKAMESRAGVSQVLNRYTYASTLSHLRRVNTPIGRDGKLAKPRQLHNSHWGMV 120

Query: 507  CFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFV 565
            C   TP+G+ CGLVKNL +   +S  +   PI + L    ME LA+ +  S+G   K+F+
Sbjct: 121  CPAETPEGQACGLVKNLSLMSYISVGTSPAPIIDALKIYQMEYLAEISPSSIGNLTKIFM 180

Query: 566  DGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN 625
            +G+WIGV  D    V++L++ RR   +  +  +  D  + EVRI  DAGR  RPL VVEN
Sbjct: 181  NGNWIGVHSDPKRLVNDLKKFRRECAISFETSVVFDVREKEVRILTDAGRCCRPLFVVEN 240

Query: 626  ---------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLL--KDIED 674
                     + +++  +   + +Q LL++G++E +  EEEE        + LL  K+I D
Sbjct: 241  QTIQLKEDQLSQLQQRDITGFGWQNLLENGVVEYLDVEEEETSMICMTPEDLLEAKNITD 300

Query: 675  KKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDT 734
              P K+THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G  +TN   R+DT
Sbjct: 301  F-PTKYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS-AMGKQAMGINSTNFQRRMDT 358

Query: 735  LSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLV 794
            L++ LFYPQ+PL  T   +      Y H   LP      GQNAIVA+  + GYNQEDS++
Sbjct: 359  LNNILFYPQKPLVTTRSME------YLHFRELPA-----GQNAIVAIACYSGYNQEDSVI 407

Query: 795  MNRASLERGMFRSEHIRSYKAEVDN-KEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGF 853
            MN+++++RG+FRS   ++Y  E      +QV+            ++ + G  D L+DDG 
Sbjct: 408  MNQSAIDRGLFRSICYKTYTDEEKKVGTLQVEEFMKPTFTT--TVRMRHGTYDKLEDDGL 465

Query: 854  PFIGANLQSGDIVIGKYA----DSGA-----------DHSIKLKHTERGMVQKVVLSSND 898
               G  +   DI+IGK      DS             D S  LK  E G++ +V++S+N 
Sbjct: 466  VAPGIKISGEDIIIGKTVPIPDDSDELGQRTSTHTRRDASTPLKSNEHGIIDQVMISTNA 525

Query: 899  DGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFP 958
            DG  F  + +  VR P +GDKF+S HGQKG +G    QE+ PFT +GI PDI+INPHA P
Sbjct: 526  DGYRFVKIRVSSVRVPQMGDKFASRHGQKGTVGITYRQEDMPFTAEGITPDIIINPHAIP 585

Query: 959  SRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERL 1018
            SR T G L+E  LGK ++A+     +G +  ATPF   +V++I+E L + G+   G E L
Sbjct: 586  SRMTIGHLVECLLGK-VSAI-----TGDEGDATPFTDVTVESISETLLKCGYQSRGFEVL 639

Query: 1019 YDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKF 1076
            Y+G +G  + + IFIGPT+YQRL HM +DK+  R  GPV  LTRQPV  R R GG++F
Sbjct: 640  YNGHSGRKLNAQIFIGPTYYQRLKHMVDDKIHARARGPVQILTRQPVEGRSRDGGLRF 697


>gi|6606139|gb|AAF19082.1|AF107810_1 DNA-dependent RNA polymerase II RPB140 [Morchella elata]
          Length = 927

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 317/953 (33%), Positives = 487/953 (51%), Gaps = 103/953 (10%)

Query: 201  AEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE-----NKRNRLIVRL-VDMSKFEDIKGG 253
            +EKV +AQE+     + V   ++     Y +E      K +RLI  + + +    + +GG
Sbjct: 1    SEKVLIAQERSAANIVQVFKKALPSPTPYVAEIRSAVEKGSRLISSMQIKLYSKGEARGG 60

Query: 254  EKVL---SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNK 310
                   ++ ++ ++IPI I+F ALGV SD++I+N + +   D  +L ++   I +A   
Sbjct: 61   YNATIKSTLPYIKSDIPIVIVFRALGVVSDEDILNHVCYDRNDTQMLEMMKPCIEEAFVI 120

Query: 311  CDEFRKGRNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSLHGTK----QKARFL 361
             D       AL ++ K  +G++    +        + M   L P +  ++    +KA FL
Sbjct: 121  QDR----EVALDFIGK--RGSSQGINKEKRIRYARDIMQKELLPHISQSEGSETRKAFFL 174

Query: 362  GYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYG 421
            GYMV  +LQ    RR+ D+RD F  KRL+LAG LL    +       K + K L++ +  
Sbjct: 175  GYMVHRMLQCALERREVDDRDHFGKKRLDLAGPLLAGLFRTLWKKLTKDVYKYLEKCVET 234

Query: 422  DRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRR 481
             +    +   + ++ +TNGL  + +TG W    K     +G+   L R     TL  LRR
Sbjct: 235  GKDFN-LTLAVKSNTITNGLKYSLATGNWGEQKKAASSKAGVSQVLNRYTFASTLSHLRR 293

Query: 482  TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSIL-EPIFEQ 540
            T   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   ++      P+ + 
Sbjct: 294  TNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSYITIGTPGYPLVDF 353

Query: 541  LFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKR 600
            L ++ ME L +          KVFV+G W+G  +D L     ++  RR+  +  +V I R
Sbjct: 354  LSSNDMELLEEYEPQRSPNATKVFVNGVWVGTHRDPLMLHKVVQDVRRQGVVNHEVSIIR 413

Query: 601  DELQSEVRIFMDAGRILRPLLVVENMGK-------------IKSLEGKN-------YTFQ 640
            D    E +IF DAGR+ RPL V++N  +             I+ LE  +       + ++
Sbjct: 414  DIRDREFKIFTDAGRVCRPLFVIDNDPRSERRGQLVLQKEHIEKLEDDHALPMEDRFGWE 473

Query: 641  ALLDHGIIELVGTEEEE---------DCCTAWGIKYLLKDIED-------KKPIK----- 679
             LL  G +E +  EEEE         D   +  ++   ++ +D       K PI      
Sbjct: 474  GLLFGGTVEYLDAEEEETVMIVMTPEDLDMSRQMQLGYEEPKDEFSAKRVKAPINPHTAH 533

Query: 680  -FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQ 738
             +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN + R+DT+++ 
Sbjct: 534  TWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS-AMGKQAMGVFLTNFAERMDTMANI 592

Query: 739  LFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRA 798
            L+YPQ+PL  T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++
Sbjct: 593  LYYPQKPLATTRSME-----------YLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQS 641

Query: 799  SLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGA 858
            S++RG+FRS   RSY  +     MQV     +       ++ K G  D LD+DG    G 
Sbjct: 642  SIDRGLFRSLFYRSYMDQEKRIGMQVVE-EFEKPTRANTLKLKHGTYDKLDEDGLVAPGV 700

Query: 859  NLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNF 903
             +   DI+IGK A                +  D S  L+ TE G+V +V+L++N +G  F
Sbjct: 701  RVSGEDIIIGKTAPIAPDVDEMGQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKF 760

Query: 904  SVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTP 963
              V +R  + P +GDKF+S HGQKG +G    QE+ PFT +GIVPD++INPHA PSR T 
Sbjct: 761  VKVRMRTTKIPQIGDKFASRHGQKGTVGITYRQEDMPFTCEGIVPDLIINPHAIPSRMTI 820

Query: 964  GQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRT 1023
              L+E  L K +++L      G +  ATPF   +V++++  L + G+   G E +Y+G T
Sbjct: 821  AHLIECQLSK-VSSL-----RGFEGDATPFTDVTVESVSTLLRQNGYQSRGFEVMYNGYT 874

Query: 1024 GEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKF 1076
            G  +   +F+GPT+YQRL HM +DK+  R  GPV  LTRQPV  R R GG++F
Sbjct: 875  GRKLVCQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRF 927


>gi|120561279|gb|ABM27024.1| RNA polymerase II second largest subunit, partial [Monosiga
            brevicollis]
          Length = 904

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 307/927 (33%), Positives = 466/927 (50%), Gaps = 74/927 (7%)

Query: 201  AEKVFVAQEQICLKRLWV-----SNSMGWT----VAYKSENKRNRLIVRLV----DMSKF 247
            +EKV +AQE++    ++V     S  M  T    +   S    + ++V+++      +K 
Sbjct: 1    SEKVLIAQEKMAGNTVYVFEKKDSKHMFVTEMRSIVEDSNRPTSTMMVKMLRGGSGGTKG 60

Query: 248  EDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA 307
                G     S+ ++  +IP+ +LF ALG   D+ I+  I +  +D  ++ +L  S+ +A
Sbjct: 61   RATFGRVIHASLPYIRQDIPVVVLFRALGFEDDRSILEHIIYDFDDMEMMELLKPSLDEA 120

Query: 308  ------DNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFL 361
                  +   D    GR ++  V            +  ++ M  ++       + KA FL
Sbjct: 121  FVVQTREVALDLI--GRRSMAAVGMSKDMRVRFARDILQKEMLPHIGVGPQCEQAKAFFL 178

Query: 362  GYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYG 421
            GYMV   LQA   RR+ D+RD + NKRL+LAG L+    +       K++ + +  DL  
Sbjct: 179  GYMVHRTLQAALRRRELDDRDHYGNKRLDLAGSLVAYLFRTLFKQLTKKLTRKVT-DLVN 237

Query: 422  DRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRR 481
                  +   LD  IL +GL  + +TG W    K  E  +G+   L R     TL  LRR
Sbjct: 238  RNHKFMVITLLDVEILGSGLRYSLATGNWGDQKKAHEARAGVSQVLNRLTFASTLSHLRR 297

Query: 482  TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTG-LVSTSILEPIFEQ 540
                +  TGK+   R  H +HWG IC   TP+G   GLVKNL +   L   S   P+ + 
Sbjct: 298  LNSPIDRTGKIAKPRQLHNTHWGYICPAETPEGHAVGLVKNLSLMASLTVGSDDTPVHDL 357

Query: 541  LFNSGMEKLADDASYS-LGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIK 599
            L  SG++ L    S S +    KVFV+G+W+G+       V+ +R+ RR   + ++V I 
Sbjct: 358  LGASGLDYLDRLPSRSAIKTATKVFVNGNWVGIHSHPDELVTTMRQMRRAHSVASEVSIF 417

Query: 600  RDELQSEVRIFMDAGRILRPLLVVEN-----------MGKIKSLEGKNYTFQALLDHGII 648
            R+  + EV I  D+GR  RPLL+V                + +L     ++  L+  G++
Sbjct: 418  RNIREREVHIVTDSGRTTRPLLIVNKDDANRCRFALKNSHVMALRNDQMSWTHLVQRGVV 477

Query: 649  ELVGTEEEEDCCTA-WGIKYL-LKDIEDKKPIKF----THCELDMSFLLGLSCGIIPFAN 702
            E +   EEE    A +G   L L  + D     +    THCE+  S +L +   IIPF +
Sbjct: 478  EYIDVNEEETTMIAMYGHDPLALLALPDSNTTSYCNTYTHCEIHPSMILSICASIIPFPD 537

Query: 703  HDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGH 762
            H+ + R  YQS     QA+G   TN  +R+DTL+H L+YPQRPL +T   + L       
Sbjct: 538  HNQSPRNTYQSAM-GKQAMGVYITNFHVRMDTLAHVLYYPQRPLVQTRSMNYLRFA---- 592

Query: 763  NHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEM 822
                   EL  G NAIV +  + GYNQEDS++MNR S+ERG+FRS   RSY A   ++  
Sbjct: 593  -------ELPAGINAIVGIMTYTGYNQEDSVIMNRYSVERGLFRSVFYRSYAASEHSERG 645

Query: 823  QVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD--------SG 874
            ++ +       N   I  +    D L+DDG    G  +   D ++G+  +        SG
Sbjct: 646  EIIKIDKPSRENC--IGMRRANYDKLEDDGIVAPGIRVSGDDAIVGRLLELPEATRQASG 703

Query: 875  A-----DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGV 929
                  D S+ L+ +E G++  V++S N  G+ F  + +R VR+P +GDKF+S HGQKG 
Sbjct: 704  GRFEKRDKSLFLRSSESGIIDGVMISVNQKGEKFVKIRVRSVRTPQIGDKFASRHGQKGT 763

Query: 930  LGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRY 989
             G   +QE+ PF   G+VPDI++NPHA PSR T G L+E  LGK  +       SG    
Sbjct: 764  CGMQYAQEDMPFAASGVVPDIIVNPHAIPSRMTIGHLIECLLGKSASH------SGTIGD 817

Query: 990  ATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKV 1049
            ATPF   +V  + + L    F ++G E +Y+G TG  +++ +F+GPT+YQRL HM +DK+
Sbjct: 818  ATPFTKVNVTDVADILEGYNFQRYGNEVMYNGFTGRKMQAQVFLGPTYYQRLKHMVDDKI 877

Query: 1050 KFRNTGPVHPLTRQPVADRKRFGGIKF 1076
              R  GP+  LTRQP+  R R GG++F
Sbjct: 878  HARARGPLQNLTRQPMEGRSRDGGLRF 904


>gi|71026390|ref|XP_762870.1| DNA-directed RNA polymerase III subunit [Theileria parva strain
            Muguga]
 gi|68349822|gb|EAN30587.1| DNA-directed RNA polymerase III subunit, putative [Theileria parva]
          Length = 1244

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 363/1282 (28%), Positives = 578/1282 (45%), Gaps = 247/1282 (19%)

Query: 38   GLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPS 97
            G+    INSYN F+ + ++   ++    ++     PS          S+ F  + + KP 
Sbjct: 46   GIARQHINSYNNFVLHEIKDIINAPSNKVLRTDLYPS---------LSLEFVDIKIGKP- 95

Query: 98   FFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQ-FQVYTQKRVTSDKFKTGREQYIQKEV 156
            FF  +      + P+  R+++ TYS+ + V +  F+ YT               + +KE 
Sbjct: 96   FFTDHSKHVFKLTPQLCRIRDFTYSAPILVTIDYFRDYT---------------FTRKE- 139

Query: 157  LSDETTNIIIGRIPVMVKSDLCWMK--------------------------------GVE 184
                  N+ IGRIPVM++S +C++                                 G+ 
Sbjct: 140  ------NLEIGRIPVMLRSCICFLSSDSESNSDHDSSGLPEYNSSKKSMKNNFDIPDGLS 193

Query: 185  KGD------------CDFDHGGYFIIKGAEKVFVAQEQICLKRLWVS-----NSMGWTVA 227
            K D            C +D GGYFIIKG EKV + QEQ+   R+ V      N      +
Sbjct: 194  KEDRESFYKSYMLDECPYDPGGYFIIKGVEKVILMQEQLSKSRIIVEMDVKKNICATVTS 253

Query: 228  YKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLI 287
              +E+K    +V           K  +  L +   + ++P+ I+  A+G+ +D EI+ LI
Sbjct: 254  ATAESKSRTAVV----------YKNSQLYLRINSFTDDVPLCIVLKAMGIETDHEIIQLI 303

Query: 288  -----------DFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPG 336
                       + T    ++ N L       D   ++     +AL Y+ K I+      G
Sbjct: 304  SNSPTTFKNSNNLTTPSSNLPNGLDYITFLNDLYNEDINSRLDALMYIGKKIRPRVLGKG 363

Query: 337  -----------------ESTEECMNTYLFPSL-----HGTKQKARFLGYMVKCLLQAYSG 374
                             E T + ++  L   +          K + L  M   +L   + 
Sbjct: 364  FFSSNKDRAPKSKQMILEDTHDILSRVLLSHIPMKDCRDFSGKIKTLSLMAHRVLNVVNN 423

Query: 375  RRKCDNRDDFRNKRLELAGE----LLERELKVHIAHARKRMAKALQRDL-------YGDR 423
                D++D + NKRLELAG+    L E   K  +++ +K +   L + L        G+ 
Sbjct: 424  VEPLDDKDHYGNKRLELAGQMISILFEDFYKKFLSNMKKSIESILVKYLEANPNPAKGEN 483

Query: 424  TVRP-IEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
            +  P I   +   I+TNG+  A +TG W+    R E+ SG+   L R + + ++  + +T
Sbjct: 484  SNFPDIFGLMPTDIITNGMQNAIATGNWNIKRFRMEK-SGVSQVLSRLSYISSIGMMTKT 542

Query: 483  RQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQL- 541
              Q +   KV   R   PS +G +C   TP+GE+CGLVKNL +   V++ +  P+ E L 
Sbjct: 543  DSQFEKGRKVSGPRALQPSQFGILCPCDTPEGESCGLVKNLSLMTHVTSDVPTPVLETLL 602

Query: 542  FNSGMEKLADDASYSLGGKFK--------------VFVDGDWIGVCKDSLSFVSELRRKR 587
            F  G+E +   +S+ +   +K              V ++G  +G+ +++   V+ + + R
Sbjct: 603  FTLGVEPIDTLSSHDMFNPWKGTSEKCDNLLNARLVLLNGILLGIHRNAKFLVNSIIKLR 662

Query: 588  RRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQA 641
            RR  +   V +  +  Q++V I  D GR+ RPL+VV+N         ++ L       + 
Sbjct: 663  RRGLINMFVSVYENSQQNQVHISSDGGRLCRPLIVVQNSVPRLTDELVQQLVENKIKMEY 722

Query: 642  LLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFA 701
            L ++GI+E +   EE +      I    KDI +      TH E+    +LG+  G+IPF 
Sbjct: 723  LFNNGILEWIDVNEENNLL----IVMREKDITNLT----THLEISPMSILGVVAGLIPFP 774

Query: 702  NHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYG 761
            NH+ + R  YQ      Q+IG    N   R DT+ H + Y Q+PL  T            
Sbjct: 775  NHNQSPRNTYQCA-MGKQSIGSIGYNQFQRCDTVVHLMNYTQQPLVTTKTI--------- 824

Query: 762  HNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKE 821
               ++   +L  GQNAIVAV  + GY  ED++++N+AS++RG  R   +R    E+ +  
Sbjct: 825  --QLVNFDKLPAGQNAIVAVMSYQGYEIEDAIILNKASIDRGFARCYTLRRLTCEITSGN 882

Query: 822  MQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPF-IGANLQSGDIVIGKYA---DSGADH 877
                  +S +  N  K Q+K    DS  ++ F   +G  +  G ++I   A   D   + 
Sbjct: 883  A-----TSLNGFNPSKSQNK----DSDSNNEFVIGVGEQVSPGQVLISTKAPPTDFTTNG 933

Query: 878  SIKLKHTER--------------------GMVQKVVLSSNDDGKNFSVVSLRQVRSPCLG 917
            S+  K T++                    G + +V+L+ N +G     + +RQ R P +G
Sbjct: 934  SMNGKGTDKNQKTGNDDKYIVNKYNLNTGGCIDRVILTENYNGNKMYKIMVRQSRPPEIG 993

Query: 918  DKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAA 977
            DKFSS HGQKGV+G +   E+ PFT  GIVPD+++NPH FPSR T G+LLE    K    
Sbjct: 994  DKFSSRHGQKGVVGLIAEHEDMPFTESGIVPDLIMNPHGFPSRMTVGKLLELVASKS--- 1050

Query: 978  LGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKW---------------GTERLYDGR 1022
                + SG    +TPF+    D +   L+ +G +K                G E LY G 
Sbjct: 1051 ---SVFSGNFVDSTPFSNSYSDNLCNDLNNSGSNKMSDICDILIKNGFHPKGKEILYSGI 1107

Query: 1023 TGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERD 1082
            +G  + +LIFIGP +YQRL HM  DK+  R  GP  P+TRQP   R R GG++ GEMERD
Sbjct: 1108 SGNPINTLIFIGPIYYQRLKHMVTDKIHARGRGPRQPITRQPTEGRSRDGGLRLGEMERD 1167

Query: 1083 CLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDD 1142
            CLIA+G++  L ERL   SD + + +C  C             G      +C+ C + + 
Sbjct: 1168 CLIAYGSSNLLVERLMLSSDVFNIEVCSSC-------------GFMGYNNFCKFCQN-NS 1213

Query: 1143 IVKANVPYGAKLLCQELFSMGI 1164
            + + ++PY  KLL QEL +M I
Sbjct: 1214 LAQVSLPYACKLLFQELQAMNI 1235


>gi|45545345|gb|AAS67520.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Pneumocystis carinii]
          Length = 898

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 315/922 (34%), Positives = 475/922 (51%), Gaps = 104/922 (11%)

Query: 201  AEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE-----NKRNRLI--VRLVDMSKFEDIKG 252
            +EKV +AQE+     + V        V+Y +E      K ++L+   ++  MSK  +   
Sbjct: 1    SEKVIIAQERSAANTVQVFKKPAPSAVSYVAEIRSAIEKSSKLMSNFQIKLMSKSIEKGA 60

Query: 253  GEKVLS-VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKC 311
            G+ + + + ++  +IPI I+F ALGV  D++I+  I +   D  +L +L   I +A    
Sbjct: 61   GQTIRACLPYIRNDIPIVIVFRALGVVPDRDIMEHICYDPNDHQMLEMLKPCIEEAF--- 117

Query: 312  DEFRKGRNALKYVDKLIKGTTFPPGES-----TEECMNTYLFPSLHGTK----QKARFLG 362
               ++   AL ++ K  +G+             ++ +   L P +  T+    +KA FLG
Sbjct: 118  -VIQEREVALDFIGK--RGSAVGINREKRLRYAQDILQKELLPHITTTEGYETRKAFFLG 174

Query: 363  YMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGD 422
            YM+  LL     RR  D+RD F  KRL+LAG LL    ++      K + K +Q+ +  +
Sbjct: 175  YMIHRLLLCALERRDPDDRDHFGKKRLDLAGPLLANLFRMLFKKLTKDVYKYMQKCVETN 234

Query: 423  RTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
            R    +   + ++ +T+GL  + +TG W    K      G+   L R     TL  LRRT
Sbjct: 235  REFN-LTLAVKSNTITHGLRYSLATGNWGDQKKIMSARVGVSQVLNRYTFASTLSHLRRT 293

Query: 483  RQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQL 541
               +   GKV   R  H +HWG +C   TP+G+ CGLVKNL +   VS  S   PI E L
Sbjct: 294  NTPIGRDGKVAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSYVSVGSASAPIIEFL 353

Query: 542  FNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
               GME L D    +     KVFV+G W+GV +D    V  ++  RR+ ++  +V + RD
Sbjct: 354  EEWGMENLEDYNPSATPNTTKVFVNGVWLGVHRDPYHLVETIKSLRRKLDISVEVSVVRD 413

Query: 602  ELQSEVRIFMDAGRILRPLLVVEN------MGKI--------KSLEGKNYT--------- 638
              + E+RIF DAGR+ RPL +V+N       G++        K ++ KN T         
Sbjct: 414  IREKELRIFTDAGRVCRPLFIVDNNPESNSRGQLMLKKEHVQKIIDNKNRTELDNESKFG 473

Query: 639  FQALLDHGIIELVGTEEEEDCCTAWGIK-----------YLLKD-IEDKKPIK------- 679
            + +L+ +GI+E +  EEEE    A   +           Y + D I+  + +K       
Sbjct: 474  WSSLVANGIVEYIDAEEEETVMIAMTPEDLEATRQIQAGYKIADEIDPARRVKPLVSPNT 533

Query: 680  --FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSH 737
              +THCE+  S +LG+   IIPF +H+ + R  YQS     QAIG   TN  +R+DT+++
Sbjct: 534  YLWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAM-GKQAIGVFLTNYQVRMDTMAN 592

Query: 738  QLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNR 797
             L+YPQ+PL  T   + L              EL  GQNAIVA+  + GYNQEDS++MN+
Sbjct: 593  ILYYPQKPLATTRSMEYLR-----------FRELPAGQNAIVAILCYSGYNQEDSVIMNQ 641

Query: 798  ASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIG 857
            +S++RG+FRS   RSY  +     MQ+       M N   ++ K G  D ++DDG    G
Sbjct: 642  SSIDRGLFRSIFYRSYMDQEKKIGMQIMEEFEKPMRN-NCLKLKHGTYDKIEDDGLIAPG 700

Query: 858  ANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKN 902
              +   DI+IGK A                +  D S  L+ TE G++ +V++S+N +G  
Sbjct: 701  TRVSGDDIIIGKTAPIPPNAEELGQRTKFHTKRDVSTPLRSTESGIIDQVMVSTNAEGLK 760

Query: 903  FSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQT 962
            F  V +R  R P +GDKF+S HGQKG +G     E+ PFT +GIVPDI+INPHA PSR T
Sbjct: 761  FVKVRMRSTRIPQIGDKFASRHGQKGTIGITYRHEDMPFTSEGIVPDIIINPHAIPSRMT 820

Query: 963  PGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGR 1022
               L+E  L K ++AL     SG +  ATPF   +V+AI++ L + G+   G E +Y+G 
Sbjct: 821  VAHLIECLLSK-VSAL-----SGYEGDATPFTDVTVEAISKMLRQHGYQSRGFEVMYNGH 874

Query: 1023 TGEMVRSLIFIGPTFYQRLIHM 1044
            TG  + + +F+GPT+YQRL HM
Sbjct: 875  TGRKLVAQVFLGPTYYQRLKHM 896


>gi|120561259|gb|ABM27014.1| RNA polymerase II second largest subunit, partial [Allomyces
            macrogynus]
          Length = 867

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 307/906 (33%), Positives = 466/906 (51%), Gaps = 105/906 (11%)

Query: 201  AEKVFVAQEQICLKRLWV-SNSMGWTVAYKSENKRN------RLIVRLVDMSKFEDIKGG 253
            +EKV +AQE+     ++V S      V +++E +         L   +V MS+ ++I   
Sbjct: 1    SEKVIIAQERTATNTVFVFSKPPPSAVLFQAEIRSQAEDGPKTLSSFIVKMSRDQNITA- 59

Query: 254  EKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD- 312
                S+ ++  +IPI +LF ALG+ +D++I+  I +   D  +L +L  SI +A    + 
Sbjct: 60   ----SLPYIQQDIPIMVLFRALGLVADRDILERICYDFSDDQMLEMLKPSIDNAFTIQER 115

Query: 313  ----EF--RKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGT----KQKARFLG 362
                +F  ++GRN     DK I+           + +   L P +  T     +K+ F+G
Sbjct: 116  EIALDFIGKRGRNIGLTRDKRIR--------YAHDLLERELLPHIGITPGCQTRKSYFIG 167

Query: 363  YMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGD 422
            YMV  LL A  GRR+ D+RD F  KRL+LAG LL    +       K +++     +   
Sbjct: 168  YMVHRLLLAALGRRQVDDRDHFGKKRLDLAGPLLASLFRTFFQKLTKDVSRYFTVCIERG 227

Query: 423  RTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
            R    +   ++++ +TNGL  A +TG W    K  E  +G+   L R     TL  LRR 
Sbjct: 228  REFN-LNMAINSNTITNGLRYALATGNWGDQKKFMETRAGVSQVLNRYTFASTLSHLRRL 286

Query: 483  RQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQL 541
               +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  S   PI E L
Sbjct: 287  NTPIGREGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMAYISVGSASGPILEFL 346

Query: 542  FNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
                 E L +  + ++G   KVFV+G W+G+ +   S V  L   RR  ++  +V + RD
Sbjct: 347  EEWTTENLEEITASAIGSNTKVFVNGSWVGIHRQPDSLVQTLISLRRSGDIMPEVSVVRD 406

Query: 602  ELQSEVRIFMDAGRILRPLLVVENMGK-------IKSLEGKNYTFQALLDHGIIELVGTE 654
               +E+RI+ DAGRI RPL +V    +       +  LE   + ++ LL +GI+E + TE
Sbjct: 407  VRDNELRIYTDAGRICRPLFIVNEQQQLVLRRDHVARLEVGEWGWEDLLANGIVEYLDTE 466

Query: 655  EEED---CCTAWGIKYLLKD-IEDKKPI----------------KFTHCELDMSFLLGLS 694
            EEE    C T   +     D I DK  +                +++HCE+  S +LG+ 
Sbjct: 467  EEETTMICMTPDDLAESRGDPIPDKSKLDKTARLKSRKAGDVCKQWSHCEIHPSMILGIC 526

Query: 695  CGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDC 754
              IIPF +H+ + R  YQS     QA+G   TN  +R+DTL++ L+YPQ+PL  T     
Sbjct: 527  ASIIPFPDHNQSPRNTYQS-AMGKQAMGLYLTNFQLRMDTLANILYYPQKPLVATR---- 581

Query: 755  LGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYK 814
                       L   EL  GQNA+VA+ V+ GYNQEDS++MN++S++RG+FRS + R+Y 
Sbjct: 582  -------SMKYLRFRELPAGQNAVVAIAVYSGYNQEDSIIMNQSSIDRGLFRSIYYRAYM 634

Query: 815  AEVDNKEMQVKRRSSDDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDIVIG 868
                    Q K+    D+  F K      ++ + G  D +++DG    G  +   DI+IG
Sbjct: 635  D-------QEKKSGFSDVETFEKPTRETTLKLRHGSYDKIEEDGLVAPGTRVTGDDIIIG 687

Query: 869  KYA-------DSGA-------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSP 914
            K A       + GA       D S  LK TE+G+V  V+L++N+DG  F  V +R  R P
Sbjct: 688  KTAPLPPDTSEMGARTTQTKKDVSTSLKSTEQGIVDHVMLTTNNDGYKFVKVRVRSTRVP 747

Query: 915  CLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKG 974
             +GDKF+S HGQKG +G    QE+ PF+  G+ PD+++NPHA PSR T G L+E  L K 
Sbjct: 748  QMGDKFASRHGQKGTVGMTYRQEDMPFSADGVTPDLIVNPHAIPSRMTIGHLVECLLSK- 806

Query: 975  IAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIG 1034
                  G  +G +  ATPF   +V  I ++L   G+ + G E +Y+G TG+ + + +F G
Sbjct: 807  -----VGSLTGTEGDATPFTDITVQEIADRLRSCGYQQRGFEIMYNGHTGKKLAAQVFFG 861

Query: 1035 PTFYQR 1040
            PT+YQR
Sbjct: 862  PTYYQR 867


>gi|313237761|emb|CBY12898.1| unnamed protein product [Oikopleura dioica]
          Length = 1139

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 357/1190 (30%), Positives = 554/1190 (46%), Gaps = 163/1190 (13%)

Query: 28   KAAVSFFNEYGLVSHQIN--SYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYAS 85
            K   +F    GLV   ++  S+N  +  GLQK   +   T V+  +         W Y  
Sbjct: 21   KLVPAFLETRGLVKQHLDLDSFNYLLTQGLQKIIKANARTDVDQNFF--------WNY-- 70

Query: 86   MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
                 + +D P    G   +   + P   RL++MTYS+ +KV V +       V  ++ +
Sbjct: 71   ---DHIYVDPPDVEYGMRSEA--ITPHECRLRDMTYSAPIKVDVTY-------VRDNQIR 118

Query: 146  TGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIK 199
              R               ++IGR+P+M++S  C +  + +       +C  D GGYF++K
Sbjct: 119  KAR--------------GLVIGRMPIMLRSARCVLANMSQEQFFKAKECPLDPGGYFVVK 164

Query: 200  GAEKVFVAQEQICLKRLWVSNSMG--WTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVL 257
            GAEKV + QEQ    R+ V       +    KS++        L+       +K  +   
Sbjct: 165  GAEKVLLMQEQAVSNRILVEKDKTGMFCAVVKSKSDTANTQTNLIQSKNKIYVKQNK--- 221

Query: 258  SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG 317
                L   + + +LF ALG+  D+EI  LI    ED S L +L  S+ +      E    
Sbjct: 222  ----LREPVNVVVLFKALGIERDQEIAELI--ATED-STLALLAPSLFECQQL--EIFSQ 272

Query: 318  RNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQ--AYSGR 375
              A+KY++K I      P  S  +  + +   +    +Q+     ++V  LL    Y  +
Sbjct: 273  NQAMKYLEKTIMRIQ-NPIVSRSQMQSRFQVRTPRNREQEVH--NWLVSTLLVNVPYCYK 329

Query: 376  R----KCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYY 431
            R    K D+RD + NKR++LAG+L+    + H  +    + + + + L   +T + ++  
Sbjct: 330  RRGMIKADDRDYYGNKRIQLAGDLISLLFEEHFKNFNDELRRTIGKKL-EKKTAQVVDVI 388

Query: 432  LDASILTN----GLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLV--DLRRTRQQ 485
                 L N     +  A  TG W+    + +R  GI   L R + +  ++   + R +  
Sbjct: 389  SSMKSLQNKITLAMEAAIQTGNWNLKRFKMDR-KGITEILNRMSFISIILVGTMTRIKGH 447

Query: 486  VQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNS 544
             + T KV   R    S WG +C   TP+G  CGLVKN+ +   V+T    +PI   L N 
Sbjct: 448  FEKTMKVTGPRALQGSQWGMLCPSDTPEGAQCGLVKNMALLSHVTTFEDDKPIHRLLINL 507

Query: 545  GMEKLADDASYSL-GGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDEL 603
            G+E+ +  + Y L G  + VF++G  +G  ++  S    ++  RR   LP  V +   E 
Sbjct: 508  GVEETSTLSGYDLHGANYLVFLNGALVGATRNPKSLTRTVQLIRRAGRLPEFVSVYVSEE 567

Query: 604  QSEVRIFMDAGRILRPLLVVENMGKIKS--------LEGKNYTFQALLDHGIIELVGTEE 655
               V +  D GR+ RP ++VEN G+ K         LEG+   F   + +G+IE +   E
Sbjct: 568  HRAVYLASDGGRLTRPCIIVEN-GRPKVTQKHINALLEGR-VKFPDFVKNGLIEYLDVNE 625

Query: 656  E-------------------EDCCTAWGIKYLLKDIEDKKPIKFTHC--ELDMSFLLGLS 694
            E                   ++    W  +  L     KK   F +C  E++   LLG+ 
Sbjct: 626  ENSALIDTTFFNYFRKIFFNQNLINRWLKRAYLNF---KKVNNFLNCSKEIEPFALLGVC 682

Query: 695  CGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDC 754
             G+IP+ +H+ + R  YQ      QA+G    N   R+D+  + L YPQRPL +T   + 
Sbjct: 683  AGLIPYPDHNQSPRNTYQC-AMGKQAMGTIAMNQRERIDSCLYNLVYPQRPLVKTRTIEL 741

Query: 755  LGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYK 814
            +G             +L  GQNA VAV  + GY+ ED+LV+N+AS++RG  R    R+ K
Sbjct: 742  IG-----------FEQLPAGQNATVAVMSYSGYDIEDALVLNKASVDRGYGRCLVYRNEK 790

Query: 815  AEVDNKEMQVKRRSSDDMVNFGKIQSKIG---RVDS-LDDDGFPFIGANLQSGDIVIGKY 870
             ++  +   V+  + ++ ++   + +K G   R D  LD DG       +  G+ V  + 
Sbjct: 791  TQLQRRGTLVE--TIEERIDGPALDAKSGEKIRADECLDMDGI------VAPGERVKDRA 842

Query: 871  ADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVL 930
                    I   H ER M+      S D       +S RQ R P LGDKFSS HGQKGV 
Sbjct: 843  PTMAKSQPI---HIERVMI------SEDATWRMVKLSYRQTRRPELGDKFSSRHGQKGVT 893

Query: 931  GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYA 990
            G +  QEN PF   G+ PD+++NPH +PSR T G+L+E    K       G  SG   Y 
Sbjct: 894  GLIVPQENMPFNEIGMCPDVIMNPHGYPSRMTVGKLMECIGSKA------GALSGKFHYG 947

Query: 991  TPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVK 1050
            T F   + + + + +   GF+ +G + L  G TGE + + IF+GP +YQ+L HM  DK+ 
Sbjct: 948  TAFGGNTTEEMAQTMLDYGFNYYGKDLLMSGETGEPLEAYIFMGPIYYQKLRHMVMDKMH 1007

Query: 1051 FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICR 1110
             R TG VH LTRQP+  R + GG++ GEMERD L+A+GA+  L+ER F  SD Y + IC 
Sbjct: 1008 ARATGKVHNLTRQPLEGRAKDGGLRLGEMERDALLAYGASNLLNERFFYSSDKYSVEICG 1067

Query: 1111 KCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELF 1160
             C             G      +CR+C +G+ +   N+PY  KLL QELF
Sbjct: 1068 NC-------------GLHGYSGWCRVCRTGEHMASINMPYACKLLLQELF 1104


>gi|302806970|ref|XP_002985216.1| hypothetical protein SELMODRAFT_424388 [Selaginella moellendorffii]
 gi|300147044|gb|EFJ13710.1| hypothetical protein SELMODRAFT_424388 [Selaginella moellendorffii]
          Length = 950

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 320/918 (34%), Positives = 463/918 (50%), Gaps = 141/918 (15%)

Query: 85  SMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKF 144
           ++R   + L KP+    +      +FPR ARL+ +TYS+R+   V+ QV           
Sbjct: 13  TIRIRNLVLHKPA----DATTGRPLFPREARLRGITYSARLCADVELQVDA--------- 59

Query: 145 KTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCDFDHGGYFIIKGAEKV 204
               EQ  +  V++     + IG IP+MV S LC     +  DC    GGYFI+KG +KV
Sbjct: 60  -VAGEQ--RNPVVNRVFPAVHIGDIPIMVNSLLCNGHDADAFDC----GGYFIVKGVDKV 112

Query: 205 FVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKG-GEKVLSVYFLS 263
            +AQE +     W            S+N R  L     +  K E  +G G  +LS   L 
Sbjct: 113 VLAQELV-----WPQALRVLCPKTGSDNWRVEL-----EQVKVELERGDGVLLLSAPGLD 162

Query: 264 TEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRK------- 316
           T IP+ I+  ALGVS+D++++ ++    +D  +  ++  SI  A  +  EF         
Sbjct: 163 T-IPLVIVLAALGVSTDRQLLEVMVHDTQDVELTELVRPSIVHAREQMQEFVNSSGVHGG 221

Query: 317 GRN----ALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAY 372
           GR+    A++ V   IK  T   G + E+  +     S      KA  +GYMV+CL    
Sbjct: 222 GRDVTSVAVELVGSRIKSVTPLAGPAQEKLGSLLCNTSSSRPADKALLMGYMVRCLCLCV 281

Query: 373 SGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKR-MAKALQRDLYGDRTVRPIEYY 431
            GR   D+    +NKR++LAG+ + ++++   A  RK  + + L+    G          
Sbjct: 282 VGRSTADDIHSLKNKRVDLAGDCMFKQMRHLSARFRKTTLKRVLKHVEAGGLDCLTDNLI 341

Query: 432 LDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGK 491
           +D S++TNGL  AFSTG WS               L R                      
Sbjct: 342 VDKSVITNGLRAAFSTGIWS---------------LNR---------------------- 364

Query: 492 VGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTS-ILEPIFEQLFNSGMEKLA 550
                  + SH+G+IC + TPD     L K + V   VS     + + EQL +  M+   
Sbjct: 365 -------NASHYGRICPVETPDDH---LAKTMAVFATVSAPRSHDNVLEQLSHCQMQS-- 412

Query: 551 DDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIF 610
             +   L G   VFV+G W+G      + +  +R  RR K +  + E+ R   ++E+RIF
Sbjct: 413 --SQGPLVGWDNVFVNGQWVGATDKPGTLLQAMRNLRRNKLIHPETELARAPSRAEIRIF 470

Query: 611 MDAGRILRPLLVVENMGKIKSLEGKNYTFQA---------LLDHGIIELVGTEEEEDCCT 661
            D GR+LRPLLVV+    + S        +A         +LD G++EL+G +EE +   
Sbjct: 471 TDGGRLLRPLLVVDKQRVLLSTREHRRELRARPAHERFDYMLDTGLVELLGAQEESNAVI 530

Query: 662 AWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAI 721
           A   +      E +    FTH E+  + LLG+S   IPF NH+ + RV +Q+QKH  QAI
Sbjct: 531 AVTRR------EAESSSSFTHVEMHPASLLGVSASAIPFLNHNQSARVTHQAQKHGKQAI 584

Query: 722 GFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAV 781
           GF T +   R+DT   QL+YPQ+PL  T ++            +L RPEL NG N +VAV
Sbjct: 585 GFYTCDILSRMDTNVRQLYYPQQPLVCTRLA-----------QLLARPELANGVNCVVAV 633

Query: 782 NVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSK 841
             + GYNQEDSL++N++SL+RG+FRS H R ++A +D         SSD  + F + +++
Sbjct: 634 ACYGGYNQEDSLILNQSSLDRGLFRSTHFRVHRATLDYS-------SSD--IRFCRPETE 684

Query: 842 IGR-----VDSLDDDGFPFIGANLQSGDIVIGK----YADSGADHSIKLKHTERGMVQKV 892
           + R     +D LD DG PFIGA +++ D+VIGK     A    DHS KL+  E+G V +V
Sbjct: 685 VARSNSDGIDKLDSDGLPFIGAEMKAADVVIGKAGRRQASKLVDHSSKLRKLEQGWVDQV 744

Query: 893 VLSSNDD-GKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIV 951
           V S  D+ G+    V LR+ R P +GDKFSSMHGQKGV+G    QE   FT QGIVPD+V
Sbjct: 745 VCSGGDEEGERHVRVRLREARCPQVGDKFSSMHGQKGVVGMKLRQEELLFTQQGIVPDVV 804

Query: 952 INPHAFPSRQTPGQLLEA 969
           INPHAFPSRQT  Q+LE+
Sbjct: 805 INPHAFPSRQTLAQMLES 822



 Score =  124 bits (312), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/132 (49%), Positives = 83/132 (62%), Gaps = 13/132 (9%)

Query: 1040 RLIHMSEDKVKFRN-TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLF 1098
            RL H+SEDK+K+R  +GPVHPLT QPV DRKR GG KFGEMERDCLI+HGA+A + ERLF
Sbjct: 824  RLHHLSEDKMKWRGASGPVHPLTHQPVKDRKREGGTKFGEMERDCLISHGASATVKERLF 883

Query: 1099 TLSDSYQMHICRKCKNVA--NVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLC 1156
             +SD   + +C  C  +A  N  Q           P C  C+    I   ++P+  KLL 
Sbjct: 884  FVSDRSLVPVCTNCHRLAILNCKQH----------PRCLFCNPQQRIATLDMPHACKLLS 933

Query: 1157 QELFSMGITLKF 1168
             EL SMG+ ++F
Sbjct: 934  MELRSMGVDMRF 945


>gi|120407526|gb|AAY82000.2| RNA polymerase II second largest subunit [Coleochaete scutata]
          Length = 702

 Score =  451 bits (1160), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 273/703 (38%), Positives = 388/703 (55%), Gaps = 83/703 (11%)

Query: 511  TPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDW 569
            TP+G+ CGLVKNL +   +S  S   PI E L     E L +     +    K+FV+G W
Sbjct: 3    TPEGQACGLVKNLALMAYISVGSAAAPILEFLEEWTTENLEEIHPNDIPNTTKIFVNGVW 62

Query: 570  IGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKI 629
            +G+ +D    V  L++ RR+ ++ T+V + RD    E+R++ D GR  RPL  V+N   +
Sbjct: 63   VGIHRDPDMLVKTLQKLRRQVDVNTEVGVVRDIRLKELRLYTDYGRCCRPLFXVDNQRLV 122

Query: 630  -----------KSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLL---KDIEDK 675
                        +L  ++  +  L++ G+IE V TEEEE    +  I  L+   ++ E+ 
Sbjct: 123  IKKHHIEELLDPTLPDEDRGWNKLVELGLIEYVDTEEEETTMISMTINDLVSARQNPEEA 182

Query: 676  KPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTL 735
                +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G            L
Sbjct: 183  YSTTYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAM-GKQAMGI-----------L 230

Query: 736  SHQLF-------------YPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVN 782
             H+LF              PQ+PL  T   + L      H   LP      GQNAIV + 
Sbjct: 231  CHKLFRLAXDHXGVCPCTIPQKPLATTRAMEHL------HFRQLP-----AGQNAIVGIL 279

Query: 783  VHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKR---RSSDDMVNFGKIQ 839
             + GYNQEDS++MN++S++RG FRS   RSY+ E   +   VK    + S + V    + 
Sbjct: 280  CYSGYNQEDSVIMNQSSIDRGFFRSISYRSYRDEEKKQGSLVKEEFEKPSRETV----MG 335

Query: 840  SKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---DSGA---------DHSIKLKHTERG 887
             + G  D LDDDG    G  + + D++IGK     D G          D S  LKH+E G
Sbjct: 336  MRHGSYDKLDDDGIAPPGTRVSAEDVIIGKTTPLPDDGNEAARRFTKRDQSTSLKHSESG 395

Query: 888  MVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIV 947
            MV +V+L++ND G  F  + +R VR P +GDKF+S HGQKG +G   +QE+ PFT +GIV
Sbjct: 396  MVDQVLLTTNDQGLRFVKMRVRSVRIPQIGDKFASRHGQKGTVGITYTQEDMPFTQEGIV 455

Query: 948  PDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHR 1007
            PDI++NPHA PSR T G L+E  LGK    +G+      +  ATPF   +VD I++ LH+
Sbjct: 456  PDIIVNPHAIPSRMTIGHLIECLLGKVATHIGR------EGDATPFTDVTVDNISKALHK 509

Query: 1008 AGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVAD 1067
             G+   G E +Y+G TG  +++ IF+GPT+YQRL HM +DK+  R  GPV  LTRQP   
Sbjct: 510  CGYQMRGFETMYNGHTGRKLQAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILTRQPAEG 569

Query: 1068 RKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGR 1127
            R + GG++FGEMERDC+IAHGAA  + ERLF  SD+Y++H+C  C  +A  I  +  G  
Sbjct: 570  RAKDGGLRFGEMERDCMIAHGAAHFMKERLFDQSDAYRVHVCEICGLIA--IANLKKGTF 627

Query: 1128 KVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
            +     CR C +  DIV+ ++PY  KLL QEL +M I  +  T
Sbjct: 628  E-----CRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMFT 665


>gi|6606111|gb|AAF19068.1|AF107796_1 DNA-dependent RNA polymerase II RPB140 [Exophiala jeanselmei]
          Length = 937

 Score =  451 bits (1160), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 303/894 (33%), Positives = 454/894 (50%), Gaps = 107/894 (11%)

Query: 261  FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNA 320
            ++  +IP+ I+F AL + SD +I+  I F   D  +L++L  S+        E +  ++A
Sbjct: 73   YVKQDIPLVIVFRALDIVSDADILEKICFDQSDKEMLDMLMGSLQ-------EGQPIQSA 125

Query: 321  LKYVDKLIKGTTFPPGESTE------ECMNTYLFPSLHG----TKQKARFLGYMVKCLLQ 370
                D + +    P  +S E      + +     P +        +KA FLGYMV  LL+
Sbjct: 126  DLARDFIARRGNIPTLKSHERQKHAIDILQKEFLPHIGQGPDVATKKAFFLGYMVNRLLK 185

Query: 371  AYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEY 430
            A  GR + D+RD    KRL+LAG L+    ++    A K   + +Q+ +   + +  I  
Sbjct: 186  AALGRAEPDDRDHLGKKRLDLAGPLMTNLFRLQFDKATKDFFRYMQKRVEAGQPIS-IHA 244

Query: 431  YLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTG 490
                 I+T+GL  + +TG W    K  +  +G+   L R     TL  LRRT   +   G
Sbjct: 245  GFKHPIITSGLKYSLATGNWGDQKKLDKAKAGVSQVLSRYTFASTLSHLRRTNAPIGREG 304

Query: 491  KVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-LEPIFEQLFNSGMEKL 549
            K+   R  H +HWG +C   TP+G+ CGLVKNL +  +V+ S   EP+   + N  ++ +
Sbjct: 305  KIAKPRQLHNTHWGYVCPAETPEGQACGLVKNLSLMSMVTNSYETEPLRAYVLNKHVDAI 364

Query: 550  ADDASYSLGGKFKVFVDGDWIGVC-KDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVR 608
             +          K+F+DG W  V  +D    V +LRR RR+     QV +  D  + E R
Sbjct: 365  EEWEPRLNPQATKIFIDGVWFAVVLRDPKRLVDDLRRLRRQGTFDAQVSLVWDIREKEFR 424

Query: 609  IFMDAGRILRPLLVVE-------------NMGKIKSLEGKNYTFQA-------------- 641
            I  D+GRI+RPL VVE             N   I  L+  NY  ++              
Sbjct: 425  ISGDSGRIIRPLFVVETDKASENVGNLVLNKEHINKLDQTNYLKESGYQFNDEVSAYGWD 484

Query: 642  -LLDHGIIELVGTEEEE------------DCCTAW-GIKYLLKDIED----KKPI----- 678
             LL  G++E +  EEEE            D    W GI+  +++ +D     +P+     
Sbjct: 485  DLLKAGVVEYLDAEEEETAMIVMTPEVLADSKARWLGIE--IENFDDPLGRNEPLLTPNS 542

Query: 679  -KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSH 737
              FTHCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN   R++T+++
Sbjct: 543  HSFTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVFLTNFDQRMETMAN 601

Query: 738  QLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNR 797
             L+YPQ+PL RTM  D L              EL  GQNAIVA+  + GYNQEDS++MN+
Sbjct: 602  ILYYPQKPLARTMAMDYLK-----------FRELPAGQNAIVAIACYSGYNQEDSVIMNQ 650

Query: 798  ASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIG 857
            +S++RG+FRS   R+Y+ +  +    V   S +       ++ K G  D +D+DG    G
Sbjct: 651  SSIDRGLFRSLFYRAYQDQEKSVGHAVIE-SFEKPTRADTLRLKHGTYDKIDEDGIVAPG 709

Query: 858  ANLQSGDIVIGKYADSGADH---------------SIKLKHTERGMVQKVVLSSNDDGKN 902
              +   DI++GK A    D                S  L+ TE G+V +V+L++ +DG  
Sbjct: 710  VRVSGEDIIMGKTAPMAPDAEELGQRQKQHVKRDVSTPLRSTESGIVDQVMLTTTNDGHR 769

Query: 903  FSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQT 962
            F+ V +R  + P +GDKF+S HGQKG +G     E+ PFT +GIVPD++INPHA PSR T
Sbjct: 770  FAKVRVRTTKVPQIGDKFASRHGQKGTIGITYRHEDMPFTREGIVPDLIINPHAIPSRMT 829

Query: 963  PGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGR 1022
               L+E  L K +A L      G +  ATPF   +V  I++ L + G+   G E +Y+G 
Sbjct: 830  IAHLIECQLSK-VATL-----RGEEGDATPFTKVTVTQISDILRKMGYQSRGFEVMYNGH 883

Query: 1023 TGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKF 1076
            TG+ + + +F+GPT+YQRL HM +DK+  R  GP   LTRQPV  R R GG++F
Sbjct: 884  TGKKLVAQVFLGPTYYQRLRHMVDDKIHSRARGPTQILTRQPVEGRARDGGLRF 937


>gi|71419186|ref|XP_811091.1| DNA-directed RNA polymerase III subunit [Trypanosoma cruzi strain CL
            Brener]
 gi|70875716|gb|EAN89240.1| DNA-directed RNA polymerase III subunit, putative [Trypanosoma cruzi]
          Length = 1130

 Score =  451 bits (1160), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 349/1182 (29%), Positives = 546/1182 (46%), Gaps = 131/1182 (11%)

Query: 38   GLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPS 97
            GL++H I S++  I   L++   +     ++   DP           S+R+  + + +P 
Sbjct: 29   GLLNHHIASFDHLINVELKRILLNESNREIKSSIDPD---------FSIRYTNIRVCQPR 79

Query: 98   FFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVL 157
               G G     + P   R +++TY   M V V++              T R++   K   
Sbjct: 80   EIVGKGQLPKAVSPHECRTRDLTYRGDMIVDVEY--------------TSRDR--NKRPC 123

Query: 158  SDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQI 211
            ++  T+I IG IP+M+KS  C + G      V   +C  D GGYFIIKG EKV + QEQ 
Sbjct: 124  TE--TDIKIGTIPIMLKSSSCNLFGRTREELVAMRECPLDPGGYFIIKGVEKVCLVQEQQ 181

Query: 212  CLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWIL 271
               R+ +       +    ++K +  I +          K G  V+       +IPI ++
Sbjct: 182  SKNRVIIEADDNGNIVAHVQSKTHYSISKCS-----VTFKKGRIVMVHRSFKEDIPIVVM 236

Query: 272  FFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGT 331
              ALG+ SD++I   I  T    +  ++LFA    A       +   +AL ++ +  K T
Sbjct: 237  LKALGMESDQQIAQHIGTT---PAFESVLFACFEQA--AALGVKTQDDALHFIGERRKET 291

Query: 332  TF------------PPGESTEECMNTYLFPSLH--------GTKQKARFLGYMVKCLLQA 371
            ++               ++  E +   L   +           + KA ++ +MV+ +++A
Sbjct: 292  SWEVDDAQQRHIQKSKADNAAEFLGNVLLCHIREGQVQRDWNFRHKALYVCFMVRRMIEA 351

Query: 372  YSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRP--IE 429
                   D RD + NKR E  G L+    +  +    + +  A+ + L    T +   ++
Sbjct: 352  SVDSSLLDERDFYGNKRFETTGTLMGLLFEDLLKQFNRVVKTAMDQQLSKKDTTKAFNVK 411

Query: 430  YYLDA--SILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQ 487
              +++   ++ +G+  A S+G W        R  GI   L R + +  +  + R     +
Sbjct: 412  QLMESKLEVIQSGMRVALSSGRWELKRFNMSR-QGITQVLSRLSYIACIGMMTRLASSFE 470

Query: 488  YTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEP-IFEQLFNSGM 546
             + K+   R   PS WG +C   TP+GE+CGLVKN G+   V+  + +  +     N G+
Sbjct: 471  KSRKISGPRSLQPSQWGMVCPCDTPEGESCGLVKNFGILSQVTLDMDDSFVRAAAHNLGV 530

Query: 547  EKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSE 606
            E++   +S      + VF++G  IG+ +        +R  RR   L   V I  ++ Q  
Sbjct: 531  EEVDSISSREFLNYYTVFLNGTLIGIHRYPNRLCRGVRALRRSGRLHPHVSIAINDRQKS 590

Query: 607  VRIFMDAGRILRPLLVVENM------GKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCC 660
            V+I  D GRI+R  +VV +         +  L    Y+    L  G++E +   E  DC 
Sbjct: 591  VQIGCDGGRIVRLYIVVNHAKPAVTSAHLDQLSAGQYSINDFLAEGLVEFIDVNEANDCL 650

Query: 661  TAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQA 720
                I    +DIE       TH E++   LLG+  GIIPF +H+ + R  +QS     QA
Sbjct: 651  ----IAVYPRDIETYT----THLEVEPLSLLGVVAGIIPFPHHNQSARNTFQSAM-GKQA 701

Query: 721  IGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVA 780
            +G    N  IR DT+     YPQRPL RT   D           +    +L  G NA+V 
Sbjct: 702  LGTIAYNQYIRTDTVLMLGAYPQRPLCRTKAMD-----------LTHYEKLGAGINAMVC 750

Query: 781  VNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQS 840
            V  + GY+ ED+ V NR SL+RG  R   +R  K EVD     ++R  + +        S
Sbjct: 751  VMSYSGYDIEDAQVYNRCSLDRGYGRCVVLR--KHEVD-----LERLPNGEYEIILPPDS 803

Query: 841  KIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA----DHSIKLKHTERGMVQKVV-LS 895
              G+  +L+ DG    GA ++  DI++ KY    +     + +  K+ +  +V  VV L 
Sbjct: 804  NAGKCKALNSDGIASKGAIVRQFDILVNKYTPVASLEPRPNPLVYKYPQPAVVDHVVILP 863

Query: 896  SNDDGKNFSV-----VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDI 950
              D  ++  V     V  R+VR P  GDKFSS HGQKGV+G +    N PF  +GI PD+
Sbjct: 864  PGDSERSMDVEQKIKVITREVRVPEPGDKFSSRHGQKGVVGLITDGVNMPFNEKGISPDM 923

Query: 951  VINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGF 1010
            ++NPH FPSR T G+LLE    K ++AL      G     T F   + + +   L R GF
Sbjct: 924  IMNPHGFPSRMTVGKLLELVSSK-VSALTGTFGDG-----TAFGGDNAEDLGMHLLRNGF 977

Query: 1011 SKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKR 1070
            +  G +  Y G TGE++++ +F GP +YQRL HM  DK+  R TGP   LTRQP   R R
Sbjct: 978  NYHGKDAFYSGITGEIMQAYVFFGPIYYQRLKHMVTDKMHARATGPRSMLTRQPTEGRSR 1037

Query: 1071 FGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVR 1130
             GG++ GEMERDC++ +GA+  L+ERL   SD + +  CR C  +               
Sbjct: 1038 SGGLRVGEMERDCMVGYGASNLLNERLLLSSDLFTVDTCRSCGFLGYC------------ 1085

Query: 1131 GPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTEF 1172
              YC  C++ + +   NVPY  KLL QEL  MGI+ +   +F
Sbjct: 1086 -GYCPYCNTKNTVSHVNVPYAFKLLLQELQGMGISTRLSLDF 1126


>gi|6606115|gb|AAF19070.1|AF107798_1 DNA-dependent RNA polymerase II RPB140 [Capronia pilosella]
          Length = 937

 Score =  451 bits (1159), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 300/896 (33%), Positives = 458/896 (51%), Gaps = 111/896 (12%)

Query: 261  FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNA 320
            ++  +IP+ I+F AL + SD +I+  I F   D  ++++L  S+ +      +  +G + 
Sbjct: 73   YVKQDIPLVIVFRALDIVSDADILEKICFDQSDKEMMDMLMGSLQEG-----QAIQGADL 127

Query: 321  LKYVDKLIKGTTFPPGESTE------ECMNTYLFPSL----HGTKQKARFLGYMVKCLLQ 370
             +  D + +    P  +S E      + +     P +      T +KA FLGYMV  LL+
Sbjct: 128  AR--DFIARRGNVPTLKSHERQKHATDILQKEFLPHIGQGPDATARKAFFLGYMVNRLLK 185

Query: 371  AYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEY 430
               GR + D+RD    KRL+LAG L+    ++    A K   + +Q+ +  ++ +  I  
Sbjct: 186  CALGRAEPDDRDHLGKKRLDLAGPLMTNLFRLQFDKATKDFYRYMQKRVESNQPIN-IMA 244

Query: 431  YLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTG 490
                 I+T+GL  + +TG W    K  +  +G+   L R     TL  LRRT   +   G
Sbjct: 245  GFKHPIITSGLKYSLATGNWGDQKKLDKAKAGVSQVLSRYTFASTLSHLRRTNAPIGREG 304

Query: 491  KVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-LEPIFEQLFNSGMEKL 549
            K+   R  H +HWG +C   TP+G+ CGLVKNL +  +V+ +    P+   +    +E L
Sbjct: 305  KIAKPRQLHNTHWGYVCPAETPEGQACGLVKNLSLMSMVTNTYETGPLLNYILTKHVEAL 364

Query: 550  ADDASYSLGGKFKVFVDGDWIGVC-KDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVR 608
             D          KVFVDG W  V  +D    V +LR+ RR+    +QV +  D    E +
Sbjct: 365  EDWEPRLNPQATKVFVDGVWFAVVLRDPKRLVDDLRKLRRKGVFDSQVSLVWDIRDKEFK 424

Query: 609  IFMDAGRILRPLLVVE------NMGKIK----------------------SLEGKNYTFQ 640
            I  D+GRI+RPL +VE      N+G +                       + E + Y + 
Sbjct: 425  ISGDSGRIVRPLFIVETDRASENLGNLVLNKDHISKLDQTAYLKEGGFQWTDEIRPYGWN 484

Query: 641  ALLDHGIIELVGTEEEE--------DCCTAWGIKYLLKDIEDKK-PIK------------ 679
             LL+ G++E +  EEEE        +  +    K+L  +IE++  P++            
Sbjct: 485  DLLESGVVEYLDAEEEETAMIIMTPEALSDSKAKWLGMEIENEDDPLRRNDPLLNPHSHT 544

Query: 680  FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQL 739
            FTHCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN   R++T+++ L
Sbjct: 545  FTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVFLTNFDQRMETMANIL 603

Query: 740  FYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRAS 799
            +YPQ+PL RTM  D L              EL  GQNAIVA+  + GYNQEDS++MN++S
Sbjct: 604  YYPQKPLARTMAMDYLK-----------FRELPAGQNAIVAIACYSGYNQEDSVIMNQSS 652

Query: 800  LERGMFRSEHIRSYK---AEVDNKEM-QVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPF 855
            ++RG+FRS   R+Y+     V +  M Q ++ +  D +       K G  D +D+DG   
Sbjct: 653  IDRGLFRSLFYRTYQDSEKSVGHSVMEQFEKPTRTDTLRL-----KHGTYDKIDEDGIVA 707

Query: 856  IGANLQSGDIVIGKYADSGADH---------------SIKLKHTERGMVQKVVLSSNDDG 900
             G  +   DI++GK A    D                S  L+ TE G+V +V+L++ +DG
Sbjct: 708  PGVRVSGEDIIMGKTAPMAPDAEELGQRQKQHIKRDVSTPLRSTESGIVDQVMLTTTNDG 767

Query: 901  KNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSR 960
              F+ V +R  ++P +GDKF+S HGQKG +G     E+ PFT +GIVPD++INPHA PSR
Sbjct: 768  HRFAKVRVRTTKTPQIGDKFASRHGQKGTIGITYRTEDMPFTREGIVPDLIINPHAIPSR 827

Query: 961  QTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYD 1020
             T   L+E  L K +A L      G +  ATPF   +V  +++ L R G+   G E +Y+
Sbjct: 828  MTIAHLIECQLSK-VATL-----RGDEGDATPFTKVTVTQVSDLLRRMGYQSRGFEVMYN 881

Query: 1021 GRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKF 1076
            G TG  + + +F+GPT+YQRL HM +DK+  R  GP   LTRQPV  R R GG++F
Sbjct: 882  GHTGRKLVAQVFLGPTYYQRLRHMVDDKIHSRARGPTQILTRQPVEGRARDGGLRF 937


>gi|40644726|emb|CAD92665.1| RNA polymerase II [Mimulus guttatus]
          Length = 629

 Score =  451 bits (1159), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 265/640 (41%), Positives = 370/640 (57%), Gaps = 59/640 (9%)

Query: 511  TPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDW 569
            TP+G+ CGLVKNL +   ++  S   PI E L   G E   + +   +    K+FV+G W
Sbjct: 2    TPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCW 61

Query: 570  IGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENM--- 626
            +G+ ++    VS LRR RRR ++ T+V + RD    E+RI+ D GR  RPL +VE     
Sbjct: 62   VGIHRNPDMLVSTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLL 121

Query: 627  ---GKIKSLEGKNYT----FQALLDHGIIELVGTEEEEDCCTAWGIKYLLK---DIEDKK 676
                 I++L+ +       +  L+  G IE + TEEEE    +  I  L+    +  +  
Sbjct: 122  IKKKDIQALQQRESPDDGGWHDLVAKGFIEYIDTEEEETTMISMTINDLVSARLNPGEAY 181

Query: 677  PIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLS 736
               +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN   R+DTL+
Sbjct: 182  SDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAM-GKQAMGIYVTNYQFRMDTLA 240

Query: 737  HQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMN 796
            + L+YPQ+PL  T   + L      H   LP      G NAIVA++ + GYNQEDS++MN
Sbjct: 241  YVLYYPQKPLVTTRAMEHL------HFRQLP-----AGINAIVAISCYSGYNQEDSVIMN 289

Query: 797  RASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK------IQSKIGRVDSLDD 850
            ++S++RG FRS   RSY+AE       VK        +FG+      +  + G  D LDD
Sbjct: 290  QSSIDRGFFRSLFFRSYRAEXKKMGTLVKE-------DFGRPDRANTMGMRHGSYDKLDD 342

Query: 851  DGFPFIGANLQSGDIVIGKYAD--------------SGADHSIKLKHTERGMVQKVVLSS 896
            DG    G  +   D++IGK                 +  DHS  L+H+E GMV +V+L++
Sbjct: 343  DGLAPPGTRVSGEDVIIGKTTPITPDEAQGQANARYTKRDHSTSLRHSETGMVDQVLLTT 402

Query: 897  NDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHA 956
            N DG  F  V +R VR P +GDKFSS HGQKG +G   +QE+ P+T++GI PDI++NPHA
Sbjct: 403  NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGINPDIIVNPHA 462

Query: 957  FPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTE 1016
             PSR T GQL+E  +GK  A +GK      +  ATPF   +VD I++ LH+ G+   G E
Sbjct: 463  IPSRMTIGQLIECVMGKVAAHMGK------EGDATPFTDVTVDNISKALHKCGYQMRGYE 516

Query: 1017 RLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKF 1076
             +Y+G TG  + S+IF+GPT+YQRL HM +DK+  R  GPV  LTRQP   R R GG++F
Sbjct: 517  TMYNGHTGRKLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 576

Query: 1077 GEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVA 1116
            GEMERDC+IAHGAA  L ERLF  SD+Y++H+C KC  +A
Sbjct: 577  GEMERDCMIAHGAAHFLKERLFDQSDAYRIHVCEKCGLIA 616


>gi|339898015|ref|XP_003392438.1| putative DNA-directed RNA polymerase polypeptide [Leishmania infantum
            JPCM5]
 gi|321399356|emb|CBZ08599.1| putative DNA-directed RNA polymerase polypeptide [Leishmania infantum
            JPCM5]
          Length = 1132

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 356/1208 (29%), Positives = 562/1208 (46%), Gaps = 132/1208 (10%)

Query: 9    TDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVE 68
            T   ++ D G+E+ +        +     G+++H I S++  I+  LQ+   +     ++
Sbjct: 3    TGAHAMSDFGDEYQRKKLEMLP-ALMAMRGILNHHIASFDHLIEVELQRILLNESNVEIK 61

Query: 69   PGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVK 128
               DP            +R+  + + +P    G G     + P+  R+++MTY   M V 
Sbjct: 62   STVDPD---------FVIRYQNIRICRPQEIVGKGHIPKLVTPQECRVRDMTYRGDMIVD 112

Query: 129  VQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM------KG 182
            VQ+        + D+    R   ++K+V         IG IP+M+KS  C +      + 
Sbjct: 113  VQY-------TSRDR---SRAMLVEKDVK--------IGTIPIMLKSKCCNLYRKTREEL 154

Query: 183  VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLV 242
            V   +C  D GGYFIIKG EKV + QEQ    R+ +       ++   ++K +  I +  
Sbjct: 155  VNMRECPLDPGGYFIIKGVEKVCLVQEQQSKNRVIIEADEHGNISAHVQSKTHYSISKCA 214

Query: 243  DMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFA 302
                    K G  VL+    + +IPI ++  ALG+ +D+ I   I  + E      ILF 
Sbjct: 215  -----VTFKKGSIVLTHRSFTEDIPIIVVLKALGLENDQHITQCIGTSPE---FQEILFP 266

Query: 303  SIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMN--------TYLFPSL--- 351
               +A  +        +AL+Y+ +  K T +   E+ +  +N         +L   L   
Sbjct: 267  CFEEA--RLLNVVTQNDALQYIGEKRKETVWEAEETQQRQVNRSKADKAAEFLANVLLCH 324

Query: 352  ---------HGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                        + KA ++ +MV+ +++A       D RD + NKR E  G L+    + 
Sbjct: 325  IREAQVQKDWNFRHKAFYVCFMVRGMIEASFDASLLDERDFYGNKRFETTGTLMALLFED 384

Query: 403  HIAHARKRMAKALQRDLYGDRTVRP--IEYYLDA--SILTNGLSRAFSTGAWSHPFKRTE 458
             +    + +  A+ + L    + RP  ++  +++   ++ NG+  A S+G W        
Sbjct: 385  LLKQFNRVVKTAMDQQLSKKDSTRPFNVKQLMESKMEVIQNGMRMAISSGRWDLKRFNMN 444

Query: 459  RISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCG 518
            R  GI   L R + + +L  + R     + T KV   R   PS WG +C   TP+GE+CG
Sbjct: 445  R-QGITQVLSRLSYIASLGMMTRLASSFEKTRKVSGPRSLQPSQWGMVCPCDTPEGESCG 503

Query: 519  LVKNLGVTGLVSTSILEPIFEQLFNS-GMEKLADDASYSLGGKFKVFVDGDWIGVCKDSL 577
            LVKN      V+  + +       ++ G+E++           + VF++G  IG+ +   
Sbjct: 504  LVKNFATLSQVTLDLNDSYVRAAAHALGVEEIDTVTPTDFLHYYTVFLNGTLIGIHRYPN 563

Query: 578  SFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKS 631
               + +R  RR   L   V I     Q  V+I  D GRI+R L++V +         +  
Sbjct: 564  RLCAGIRALRRSGRLHPHVSISTQPRQRTVQIGSDGGRIVRLLIIVRDGKPAVTSAHLDR 623

Query: 632  LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLL 691
            L  +  T    L  G+IE V   E  DC  A           D  P   TH E++   LL
Sbjct: 624  LRDRLCTHNDFLAEGLIEYVDVNESNDCLIAVYPA-------DIGPYT-THLEVEPLSLL 675

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G+  GIIP+ +H+ + R  +QS     QA+G    N  IR DT+     YPQRPL RT  
Sbjct: 676  GVVAGIIPYPHHNQSARNTFQS-AMGKQALGTVALNQYIRADTVLLLGAYPQRPLCRTKA 734

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
                         +    +L  G NA+V V  + GY+ ED+ V N++SL+RG  R   +R
Sbjct: 735  MS-----------LTHYEKLGAGINAMVCVMSYSGYDIEDAQVYNKSSLDRGYGRCVVLR 783

Query: 812  SYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA 871
              K EVD   ++       D++   +  S  G+  +L+ DG    GA +Q  D+++ K+ 
Sbjct: 784  --KHEVD---LEKYAGGEFDVILPPEKNSGTGKFKALNPDGVASKGALVQQYDVLVNKFT 838

Query: 872  D-SGAD---HSIKLKHTERGMVQKVVLS-------SNDDGKNFSVVSLRQVRSPCLGDKF 920
              +G D     +  K+ +  +V  V++S       S D  +   V++ R+VR P  GDKF
Sbjct: 839  PVAGGDPRPAPLVYKYPQPAVVDHVIISPPGDYDRSLDVDQKIKVIT-REVRPPEPGDKF 897

Query: 921  SSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGK 980
            SS HGQKGV+G + +  + PF  +G+ PD+++NPH FPSR T G+LLE    K  AAL  
Sbjct: 898  SSRHGQKGVVGLIVNGVDMPFNERGMCPDMIMNPHGFPSRMTVGKLLELVCSKA-AALRG 956

Query: 981  GICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQR 1040
             +  G     T F   S D+I++QL   G++  G +  Y G TG++++  +F GP +YQR
Sbjct: 957  SMGDG-----TAFGGDSADSISQQLLSFGYNYHGKDVFYSGITGDLMQGYVFFGPIYYQR 1011

Query: 1041 LIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTL 1100
            L HM  DK+  R+TGP   LTRQP   R R GG++ GEMERDC++ +GA+  L+ERL   
Sbjct: 1012 LKHMVTDKMHARSTGPRSMLTRQPTEGRSRSGGLRVGEMERDCMVGYGASNLLNERLLIS 1071

Query: 1101 SDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELF 1160
            SD +   IC  C N+          G   R   C  C +     K N+PY  KLL QEL 
Sbjct: 1072 SDMFTADICHVCGNL----------GYNNR---CTYCKTKGTTSKVNMPYAFKLLIQELQ 1118

Query: 1161 SMGITLKF 1168
             MG++L+ 
Sbjct: 1119 GMGVSLRL 1126


>gi|68131860|gb|AAY85208.1| RNA polymerase II second largest subunit [Euptelea polyandra]
          Length = 874

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 302/911 (33%), Positives = 472/911 (51%), Gaps = 103/911 (11%)

Query: 109 MFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGR 168
           +FP+ ARL+N+TYS+ + V V       KR+     K G +   ++   + E T + IG+
Sbjct: 5   LFPKAARLRNLTYSAPLYVDVT------KRI----IKKGHD--CEEVTETQEFTKVFIGK 52

Query: 169 IPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV---- 218
           +P+M++S  C +         E G+C +D GGYFII G+EKV +AQE++    ++V    
Sbjct: 53  VPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 112

Query: 219 -SNSMGWTVAYKS-ENKRNR----LIVRLVDMSKFEDIKGGEKV-LSVYFLSTEIPIWIL 271
             N   +    +S    +NR    + VR++  +  +    G+ +  ++ ++ TEIPI I+
Sbjct: 113 QPNKYAYVGEVRSMAESQNRPPSSMFVRMLSRASAKGGSSGQYIRATLPYIRTEIPIIIV 172

Query: 272 FFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGT 331
           F ALG  +DK+I+  I +   D  ++ +L  S+ +A       +  + AL Y+ K  +G+
Sbjct: 173 FRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAF----VIQNQQVALDYIGK--RGS 226

Query: 332 TFPPGESTE-------ECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRRKCDN 380
           T   G + E       E +   + P +    +   +KA + GY++  LL    GRR  D+
Sbjct: 227 TV--GVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDD 284

Query: 381 RDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNG 440
           RD + NKRL+LAG LL    ++      + +   +Q+ +   + V  +++ + A  +T+G
Sbjct: 285 RDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN-LQFAIKAKTITSG 343

Query: 441 LSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHP 500
           L  + +TG W        R +G+   L R     TL  LRR    +   GK+   R  H 
Sbjct: 344 LKYSLATGNWGQANAAGTR-AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHN 402

Query: 501 SHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGG 559
           SHWG +C   TP+G+ CGLVKNL +   ++  S   PI E L     E   + +   +  
Sbjct: 403 SHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQ 462

Query: 560 KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRP 619
             K+FV+G W+G+ ++    V  LR+ RR+ ++ T+V + RD    E+R++ D GR  RP
Sbjct: 463 ATKIFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRP 522

Query: 620 LLVVENM------GKIKSLEGKNYT----FQALLDHGIIELVGTEEEEDCCTAWGIKYLL 669
           L +VE          I++L+ +       +  L+  G IE V TEEEE    +  I  L+
Sbjct: 523 LFIVEKQRLLIKKKDIRALQQRESPDDGGWHDLVAKGFIEYVDTEEEETTMISMTINDLI 582

Query: 670 K---DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTT 726
               + E+     +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   T
Sbjct: 583 TARINPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGIYVT 641

Query: 727 NPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLG 786
           N  +R+DTL++ L+YPQ+PL  T   + L      H   LP      G NAIVA+  + G
Sbjct: 642 NYQLRMDTLAYVLYYPQKPLVTTRAMEHL------HFRQLP-----AGINAIVAIACYSG 690

Query: 787 YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK------IQS 840
           YNQEDS++MN++S++RG FRS   RSY+ E       VK        +FG+      +  
Sbjct: 691 YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE-------DFGRPNRENTMGM 743

Query: 841 KIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD--------------SGADHSIKLKHTER 886
           + G  D LDDDG    G  +   D++IGK                 +  DHS  L+H+E 
Sbjct: 744 RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQEESQGQASSRYTRRDHSTSLRHSES 803

Query: 887 GMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGI 946
           GMV +V+L++N DG  F  V +R VR P +GDKFSS HGQKG +G   +QE+ P+T++GI
Sbjct: 804 GMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGI 863

Query: 947 VPDIVINPHAF 957
            PDI++NPHA 
Sbjct: 864 TPDIIVNPHAI 874


>gi|68300794|gb|AAY89340.1| RNA polymerase II second largest subunit [Berberidopsis beckleri]
          Length = 873

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 303/910 (33%), Positives = 472/910 (51%), Gaps = 102/910 (11%)

Query: 109 MFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGR 168
           +FP+ ARL+N+TYS+ + V V       KRV     K G +   ++   + + T + IG+
Sbjct: 5   LFPKAARLRNLTYSAPLYVDVT------KRV----IKKGHD--CEEVTETQDFTKVFIGK 52

Query: 169 IPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV---- 218
           +P+M++S  C +         E G+C FD GGYFII G+EKV +AQE++    ++V    
Sbjct: 53  VPIMLRSSYCTVYQNSEKDLTELGECPFDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 112

Query: 219 -SNSMGWTVAYKS-ENKRNR----LIVRLVDMSKFEDIKGGEKV-LSVYFLSTEIPIWIL 271
             N   +    +S    +NR    + VR++  +  +    G+ +  ++ ++ TEIPI I+
Sbjct: 113 QPNKYAYVGEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIV 172

Query: 272 FFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGT 331
           F ALG  +DK+I+  I +   D  ++ +L  S+ +A       +  + AL Y+ K  +G+
Sbjct: 173 FRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAF----VIQNQQVALDYIGK--RGS 226

Query: 332 TFPPGESTE-------ECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRRKCDN 380
           T   G + E       E +   + P +    +   +KA + GY++  LL    GRR  D+
Sbjct: 227 TV--GVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDD 284

Query: 381 RDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNG 440
           RD + NKRL+LAG LL    ++      + +   +Q+ +   + V  +++ + A  +T+G
Sbjct: 285 RDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN-LQFAIKAKTITSG 343

Query: 441 LSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHP 500
           L  + +TG W        R +G+   L R     TL  LRR    +   GK+   R  H 
Sbjct: 344 LKYSLATGNWGQANAAGTR-AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHN 402

Query: 501 SHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGG 559
           SHWG +C   TP+G+ CGLVKNL +   ++  S   PI E L     E   + +   +  
Sbjct: 403 SHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQ 462

Query: 560 KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRP 619
             K+FV+G W+G+ ++    V  LR+ RR+ ++ T+V + RD    E+R++ D GR  RP
Sbjct: 463 ATKIFVNGCWVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRP 522

Query: 620 LLVVENM------GKIKSLEGKNYT----FQALLDHGIIELVGTEEEEDCCTAWGIKYLL 669
           L +VE          I++L+ +       +  L+  G IE V TEEEE    +  I  L+
Sbjct: 523 LFIVEKQRLLIKKKDIQALQQRESHEDGGWHDLVAKGFIEYVDTEEEETTMISMTINDLI 582

Query: 670 K---DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTT 726
               + E+     +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   T
Sbjct: 583 SAKLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGIYVT 641

Query: 727 NPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLG 786
           N  +R+DTL++ L+YPQ+PL  T   + L      H   LP      G NAIVA+  + G
Sbjct: 642 NYQLRMDTLAYVLYYPQKPLVTTRAMEHL------HFRQLP-----AGINAIVAITCYSG 690

Query: 787 YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK------IQS 840
           YNQEDS++MN++S++RG FRS   RSY+ E       VK        +FG+      +  
Sbjct: 691 YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE-------DFGRPNRENTMGM 743

Query: 841 KIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD-------------SGADHSIKLKHTERG 887
           + G  D LDDDG    G  +   D++IGK                +  DHS  L+H+E G
Sbjct: 744 RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRRDHSTSLRHSESG 803

Query: 888 MVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIV 947
           MV +V+L++N DG  F  V +R VR P +GDKFSS HGQKG +G   +QE+ P+T++GI 
Sbjct: 804 MVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 863

Query: 948 PDIVINPHAF 957
           PDI++NPHA 
Sbjct: 864 PDIIVNPHAI 873


>gi|6606097|gb|AAF19061.1|AF107789_1 DNA-dependent RNA polymerase II RPB140 [Neurospora crassa]
          Length = 903

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 324/935 (34%), Positives = 470/935 (50%), Gaps = 124/935 (13%)

Query: 201  AEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE-----NKRNRLI--VRLVDMSKFEDIKG 252
            +EKV +AQE+     + V     G +V+Y++E      K +RLI  +++   +K +  KG
Sbjct: 1    SEKVLIAQERSAANIVQVFKKPPGGSVSYQAEIRSALEKGSRLISSLQMRLHTKADQNKG 60

Query: 253  ---GEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADN 309
                   +++ ++  E+ + I+F ALGV SD++I+N I +   D  +L  L   I +A  
Sbjct: 61   RLANTVSVTLPYVKEEVSLAIVFRALGVVSDEDILNHICYDRRDSQMLEALRPCIEEA-- 118

Query: 310  KCDEFRKGRNALKYVDKLIKGTTFPPG----ESTEECMNTYLFPSLHGTK----QKARFL 361
             C + R+   AL Y+ K   G+T        ++ +E +   L P +   +    +KA FL
Sbjct: 119  FCIQDRE--VALDYIGKRGNGSTGINRNGRIKAAKEMLQKELLPHISQAEGCETRKAFFL 176

Query: 362  GYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYG 421
            GYMV  LLQ   GRR  D+RD F  KRL+LAG LL        A   + + + L +DL G
Sbjct: 177  GYMVHKLLQCVLGRRDTDDRDHFGKKRLDLAGPLL--------AKLFRGIVRRLTQDLMG 228

Query: 422  --DRTVRPIEYY-----LDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQ 474
               R V   +++     + AS LTNGL  + +TG W    K     +G+   L R     
Sbjct: 229  YMKRCVDTNKHFSLALGIKASTLTNGLKYSLATGNWGDQKKAMSSTAGVSQVLNRYTFSS 288

Query: 475  TLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSIL 534
            TL  LRRT   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   VS   L
Sbjct: 289  TLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCFVSVGTL 348

Query: 535  -EPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELP 593
             +PI E +    ME L +          KVFV+G W+GV +D    V+ ++  RR+  + 
Sbjct: 349  ADPIIEFMIARNMEVLEEYEPLRYPNATKVFVNGTWVGVHQDPKHLVTLVQNLRRKNIIS 408

Query: 594  TQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGK----------------IKSLEGKN- 636
             +V + RD    E +IF DAGR++RPL VVE                    I+ LE    
Sbjct: 409  FEVSLVRDIRDREFKIFSDAGRVMRPLFVVEQEDNSESGVEKGQLILTKEHIRRLEQDKE 468

Query: 637  --------YTFQALLDHGIIELVGTEEEED---CCTAWGI------KYLLKDIEDKKPIK 679
                    + +Q LL+ G IE +  EEEE    C T   +      K+  ++ ED    +
Sbjct: 469  LAKYHEDYFGWQGLLESGAIEYLDAEEEETAMICMTPEDLDTYRQHKFKGREFEDDAANR 528

Query: 680  ---------------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFP 724
                           +THCE+  S LLG+   IIPF +H+ + R  YQS     QA+GF 
Sbjct: 529  GNSRIKTKFNPTTHMYTHCEIHPSMLLGICASIIPFPDHNQSPRNTYQSAM-GKQAMGFF 587

Query: 725  TTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVH 784
             TN S R+DT+++ L+YPQ+PL  T   +            L   EL  GQNAIVA+  +
Sbjct: 588  LTNYSRRMDTMANILYYPQKPLATTRSME-----------YLKFRELPAGQNAIVAIACY 636

Query: 785  LGYNQEDSLVMNRASLERGMFRSEHIRSYK-AEVDNKEMQVKRRSSDDMVNFGKIQSKIG 843
             GYNQEDS++MN++S++RG+FRS   RSY   E       V++    D  N   ++ K G
Sbjct: 637  SGYNQEDSVIMNQSSIDRGIFRSLFFRSYTDCEKRVGINIVEQFEKPDRSN--TLRPKHG 694

Query: 844  RVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH---------------SIKLKHTERGM 888
              D L++DG    G  +   DI+IGK +    D+               S  L+ TE G+
Sbjct: 695  TYDKLENDGIIAPGIRVTGDDIIIGKTSPINPDNQELGQRTAQHVKRDASTPLRSTESGI 754

Query: 889  VQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVP 948
            V  V  ++N DG  +  V +R  + P +GDKF+S HGQKG +G    QE+ PFT +GI P
Sbjct: 755  VDSVAFTTNQDGLRYVKVRVRTTKIPQIGDKFASRHGQKGTIGVTYRQEDMPFTAEGITP 814

Query: 949  DIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRA 1008
            DI+INPHA PSR T   L+E  L K       G   G++  ATPF   +VD+++  L   
Sbjct: 815  DIIINPHAIPSRMTIAHLIECLLSK------VGALKGMEGDATPFTDVTVDSVSNLLREH 868

Query: 1009 GFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIH 1043
            G+   G E +Y G TG+ +R+ +F GPT+YQRL H
Sbjct: 869  GYQSRGFEIMYHGHTGKKLRAQVFFGPTYYQRLRH 903


>gi|67810752|gb|AAY82003.1| RNA polymerase II second largest subunit [Psilotum nudum]
          Length = 614

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 258/635 (40%), Positives = 363/635 (57%), Gaps = 53/635 (8%)

Query: 503  WGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKF 561
            WG +C   TP+G+ CGLVKNL +   ++  S   PI E L     E   + +   +    
Sbjct: 1    WGMMCPAETPEGQACGLVKNLALMSYITVGSAANPILEFLEEWSTENFEEISPAVIPQAT 60

Query: 562  KVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLL 621
            K+FV+G W+G+ +D    V  LR+ RR+ ++ T+V + RD    E+R++ D GR  RPL 
Sbjct: 61   KIFVNGCWVGIHRDPELLVRTLRQLRRQVDVNTEVGVVRDIRLKELRLYTDYGRCSRPLF 120

Query: 622  VVENM------GKIKSLEGKNYTFQALLD---HGIIELVGTEEEEDCCTAWGI---KYLL 669
            +VEN         I++L+ K  T  A  D    G IE V TEEEE    +      +   
Sbjct: 121  IVENQRLLIKKSHIRALQQKESTXSAWYDLVAKGFIEYVDTEEEETTMISMNXSDXEAAR 180

Query: 670  KDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPS 729
               E+     +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN  
Sbjct: 181  DHPEEAYSDTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAM-GKQAMGIYVTNYQ 239

Query: 730  IRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQ 789
            +R+DTL++ LFYPQ+PL  T   + L      H   LP      G NA+VA+  + GYNQ
Sbjct: 240  LRMDTLAYVLFYPQKPLVTTRAMEHL------HFRQLP-----AGINAVVAIACYSGYNQ 288

Query: 790  EDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVK----RRSSDDMVNFGKIQSKIGRV 845
            EDS++MN++S++RG FRS   RSY+ E   +   VK    R + +   N      + G  
Sbjct: 289  EDSVIMNQSSIDRGFFRSIFYRSYRDEEXKQGTLVKEEFERPNRETXTNM-----RHGSY 343

Query: 846  DSLDDDGFPFIGANLQSGDIVIGKYA-----DSGA--------DHSIKLKHTERGMVQKV 892
            D LDDDG    G  +   D++IGK       D+G         D S  L+ +E GM+ +V
Sbjct: 344  DKLDDDGLTPPGTRVSGEDVIIGKTTPLSQDDTGNQAQRYSKRDQSTCLRXSESGMIDQV 403

Query: 893  VLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVI 952
            +L++N DG  F  + +R +R P +GDKFSS HGQKG +G   +QE+ P+T +GI PDI++
Sbjct: 404  LLTTNADGLRFVKIRVRSIRVPQIGDKFSSRHGQKGTVGMTYTQEDMPWTQEGISPDIIV 463

Query: 953  NPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSK 1012
            NPHA PSR T GQL+E  +GK  A +G+      +  ATPF   +VD+I++ LH+ G+  
Sbjct: 464  NPHAIPSRMTIGQLIECIMGKVAAHMGR------EGDATPFTDVTVDSISKALHKCGYQM 517

Query: 1013 WGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFG 1072
             G E +Y+G T   + ++IFIGPT+YQRL HM +DK+  R  GPV  LTRQP   R R G
Sbjct: 518  RGFETMYNGHTXRRLNAMIFIGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDG 577

Query: 1073 GIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMH 1107
            G++FGEMERDC+IAHGAA  L ERLF  SD+Y++H
Sbjct: 578  GLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVH 612


>gi|170579233|ref|XP_001894738.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
            putative [Brugia malayi]
 gi|158598542|gb|EDP36414.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
            putative [Brugia malayi]
          Length = 1104

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 356/1201 (29%), Positives = 558/1201 (46%), Gaps = 188/1201 (15%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            +F    GLV   I SY+ F+   ++K   +  +  +    +PS           +++  +
Sbjct: 21   AFLQVRGLVKQHIASYDYFVSTEIKKILRANDK--ITSDANPS---------FYLKYLDI 69

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             +  PS   G       + P   RL++MTYS+ + V +++   +Q+              
Sbjct: 70   HVGMPSSEEGFNQINDKISPHECRLRDMTYSAPISVDIEYTRGSQR-------------- 115

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGAEKVF 205
                VL +    +IIG++PVM++S  C +K + + +      C +D GGYFII+G+EKV 
Sbjct: 116  ----VLRN---GLIIGKMPVMLRSSKCVLKNMNESELARVQECPYDPGGYFIIRGSEKVV 168

Query: 206  VAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV---YF- 261
            + QEQ+   R+ +             N +  L   +  +S  ++ K    + S    Y+ 
Sbjct: 169  LIQEQLSKNRIMIG-----------RNSKKELQCEI--LSSTQERKSKTYIASKKQRYYV 215

Query: 262  ----LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG 317
                LS ++PI I+F A+G  SD +IV+ +     +   +  +  SI +  +     ++G
Sbjct: 216  RHNQLSDDVPIAIIFKAMGFESDHDIVSAVGL---EEKFVAAMAPSIEECASHQIVTQEG 272

Query: 318  RNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLH-------------------GTKQKA 358
              AL+Y+   +K   F P  S      T   P  H                     K KA
Sbjct: 273  --ALQYIASKVKIRKFGPATS-----GTSTLPREHEAIDFLSNLMIAHVPCPDGNMKMKA 325

Query: 359  RFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQR- 417
             +LG MV+ L+QA  G  +CD+RD + NKRLELAG LL     +      KR    L+R 
Sbjct: 326  VYLGLMVRRLMQAEVGDTECDDRDFYGNKRLELAGSLL----ALLFEDVFKRFNSELKRI 381

Query: 418  --DLYGDRTVRPIEY--YLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPL 473
              +  G     P++   ++   ++TN L  A +TG W+    + ER  G+   L R + +
Sbjct: 382  ADNSLGKTLAAPLDIVKHVRQDLITNALVDALATGNWTIKRFKMER-QGVTQVLSRLSYI 440

Query: 474  QTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI 533
              L  + R     + T KV   R   PS WG +C   TP+GE+CGLVKNL +   ++T  
Sbjct: 441  SVLGMMTRINSTFEKTRKVSGPRSLQPSQWGMLCPSDTPEGESCGLVKNLALLSHITTDS 500

Query: 534  LE-PIFEQLFNSGMEKLAD-------DASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRR 585
             E P+   L+N+G+E +         + +Y +     VF++G  +G+  D    VS +R 
Sbjct: 501  DEKPVIRLLYNAGVEDVKSLHFSAIHNPAYHI-----VFLNGVIVGLTIDPQRIVSTIRA 555

Query: 586  KRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTF 639
             RR   L   V +  +  Q  V I  D GR+ RP ++V+N         I+ L+     F
Sbjct: 556  VRRHGLLNEFVSVSTNAAQRSVYIASDGGRLCRPYIIVKNSIPQVTQEHIEELKKGYRIF 615

Query: 640  QALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIP 699
            +  +D G+IE +   E  D   A          E++     TH E++   LLG+  G+IP
Sbjct: 616  EDFVDDGLIEYLDVNEMNDASIAV--------YENQIKPTTTHLEIEPFTLLGVCAGLIP 667

Query: 700  FANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPG 759
            + +H+ + R  YQ      QA+G    N   R+D+L + L YPQRPL +T   +      
Sbjct: 668  YPHHNQSPRNTYQC-AMGKQAMGTIGYNQQKRIDSLMYLLVYPQRPLVKTKTIE------ 720

Query: 760  YGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDN 819
            + +   LP      GQNAI+AV  + GY+ ED+LV+N+ASL+RG  R    +  KA    
Sbjct: 721  FCNFEKLPA-----GQNAIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHAKATARK 775

Query: 820  KEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSI 879
               Q   R     +     +  I +   LD +G  ++GA ++S  ++I K+        +
Sbjct: 776  YPNQTFDRLMGPTIE-AATRKPIYKHQVLDQEGIVYVGACIRSKQVMINKH--------M 826

Query: 880  KLKHTERGMVQKVVLSSNDDGKNFS---VVSLRQV----RSPCLGDKFSSMHGQKGVLGF 932
             +   E G        SN+DG N      V  + V    R+P         + ++ +L +
Sbjct: 827  PVVSMEAGAT-----VSNNDGTNIGGSHEVEYKDVSVVYRNPV------PSYAERVLLTY 875

Query: 933  LES-----QENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLK 987
             E      +E+ PF   G+ PD+++NPH +PSR T G+L+E   GK        + SG  
Sbjct: 876  NEDDAHLVKEDMPFNDLGMCPDMIMNPHGYPSRMTVGKLMELLSGKN------AVLSGKF 929

Query: 988  RYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSED 1047
             Y T F    VD + E+L   GF+  G + L  G TG+ + + I+ GP +YQ+L HM  D
Sbjct: 930  HYGTAFGGDQVDIVCEELAARGFNYLGKDMLTSGITGQQLSAYIYFGPIYYQKLKHMVLD 989

Query: 1048 KVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMH 1107
            K+  R  GP   LTRQP   R R GG++ GEMERDCLIA+GA+  L ERL   SD +++ 
Sbjct: 990  KMHARARGPRAVLTRQPTEGRARDGGLRLGEMERDCLIAYGASMLLMERLMVSSDEFKVD 1049

Query: 1108 ICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLK 1167
            +C +C  +          G K    +C++C S   +    +PY  KLL QEL SM I  K
Sbjct: 1050 VCSQCGLI----------GYK---SWCQMCRSSRTMATIKIPYACKLLFQELQSMNIVPK 1096

Query: 1168 F 1168
             
Sbjct: 1097 I 1097


>gi|340506559|gb|EGR32674.1| RNA polymerase ii second largest subunit, putative [Ichthyophthirius
            multifiliis]
          Length = 936

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 308/919 (33%), Positives = 461/919 (50%), Gaps = 103/919 (11%)

Query: 319  NALKYVDKLIKGT--TFPPGES---TEECMNTYLFPSL----HGTKQKARFLGYMVKCLL 369
            +AL+Y+   IK +  +    ES    +E +  YL P +        QKA F+GYM++ LL
Sbjct: 36   SALQYIGLRIKSSNRSVSRQESIKIAKEVLCQYLLPHVGLDEKSFNQKAFFVGYMIQKLL 95

Query: 370  QAYSGRRKCDNRDDFRNKRLELAG----ELLERELKVHIAHARKRMAKALQRDLY-GDRT 424
             A  G+   D+RD +  KRL++AG    +L +  L++ +  A+ ++ + + + L   D  
Sbjct: 96   NAALGKTSEDDRDHYGKKRLDMAGTLMSQLFKERLRLFLRRAKNQLQEKINKTLREPDNE 155

Query: 425  VRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPL-QTLVDLRRTR 483
                E   D  ++++ L  A +TG W          +G+   L R   L  T+  +RR  
Sbjct: 156  FSLREDIFDHRLISDSLRLALATGNWGQTADGEVAKTGVAQVLKRDTSLFATMSHMRRVN 215

Query: 484  QQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-----------S 532
              ++   K+   R  H +H+G IC   TP+G+  G+VKN+ +   VS             
Sbjct: 216  APMKSAAKLAKPRQLHNTHYGLICPAETPEGQKIGMVKNMALMAQVSLGFSEGDNKNFLE 275

Query: 533  ILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL 592
             LE   E++    + +++ D    L    KVF +G+W G        VS +++ R  +EL
Sbjct: 276  FLESFQEEVKPFDISQISFDDIPKLT---KVFYNGNWFGFTDKPDDLVSFIKKTRTSQEL 332

Query: 593  PTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMG--------------------KIKSL 632
               + + RD +  E++I+ D+GR +RPL +VEN                      KI S 
Sbjct: 333  KG-LSVVRDIINKEIKIYTDSGRCMRPLFIVENYQTRQLKITKQDINKYIQIQEEKINSG 391

Query: 633  EGKNYT-FQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLL 691
            + K Y  F      G IE +  EEEE    A  I    +  + +K + FTH E+  + +L
Sbjct: 392  DVKEYKLFSEFCKEGFIEFLDVEEEEGAMIAIDINDFYQTEKLRKDLPFTHSEIHPAMIL 451

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G+   IIPF +H+   R   QS     QA+G  +TN ++RVDTL H L+YPQ PL  +  
Sbjct: 452  GVCASIIPFGHHNQGPRNTLQS-AMGKQAMGLNSTNFNLRVDTLVHILYYPQIPLASSKS 510

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
            +D      Y  +  +P      G NAIVA+    GYNQEDS++MN++S++RG+FRS   R
Sbjct: 511  ND------YICSKSIPF-----GINAIVAIACFTGYNQEDSIIMNQSSIDRGLFRSAFFR 559

Query: 812  SYKAEVDNKEMQVKRRSSDDMVNF-GKIQSKIGRVDS---LDDDGFPFIGANLQSGDIVI 867
            +YK +   +EM     S  + + F  + ++ I   +S   LD DG    G  +   DI++
Sbjct: 560  TYKTQEKKEEMGA--FSIKETICFPDQNKTVIPNSNSFLKLDYDGIIPPGTQVTGDDILV 617

Query: 868  GKYADSGADHSIKLKH-------------TERGMVQKVVLSSNDDGKNFSVVSLRQVRSP 914
            GK  +       K K+             +E G V  V+LS + DG     V LR  R P
Sbjct: 618  GKVVELPESQDFKSKNFKQFKDVSLCSRRSEIGYVDTVILSEDKDGFYIVKVKLRSNRIP 677

Query: 915  CLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKG 974
             +GDKF+S HGQKG +G     E+ PF IQGI  +++INPH  PSR T G ++E  L   
Sbjct: 678  QIGDKFASRHGQKGTVGMTIRGEDMPFNIQGIPAELIINPHCIPSRMTIGHMIEG-LNSK 736

Query: 975  IAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIG 1034
            ++AL KGI       ATPF+   +  I  +LH  G+ K+G E LY+  TG  + + I+ G
Sbjct: 737  LSAL-KGIWGD----ATPFSGLKLQDIASELHTHGYQKYGNEVLYNPYTGSRLTTQIYFG 791

Query: 1035 PTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLH 1094
            PT+YQRL H+ +DK+  R  GPV  +TRQP   R R GG++FGEMERDC+IAHG +  L 
Sbjct: 792  PTYYQRLRHLVDDKMYSRARGPVVAITRQPTHGRSRGGGLRFGEMERDCIIAHGTSNFLK 851

Query: 1095 ERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDD--------IVKA 1146
            ER F +SD Y++H+C +C  +A+                C+ C    D        IV+ 
Sbjct: 852  ERTFGVSDQYRVHVCSECGLIAS-------ANLTDHQYICKGCQESSDQKKKNSYKIVQV 904

Query: 1147 NVPYGAKLLCQELFSMGIT 1165
             +PY AK L QEL +M I 
Sbjct: 905  FLPYAAKQLIQELMAMHIV 923


>gi|6606123|gb|AAF19074.1|AF107802_1 DNA-dependent RNA polymerase II RPB140 [Lasiodiplodia theobromae]
          Length = 942

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 310/968 (32%), Positives = 472/968 (48%), Gaps = 119/968 (12%)

Query: 202  EKVFVAQEQICLKRLWV----SNSMGWTVAYKSENKRNRLIVRLVDMSKFE------DIK 251
            +KV +AQE+     + V     +   W    +S  ++   ++  + +  +E      + +
Sbjct: 1    DKVLIAQERSAANIVQVFRKRQSPTPWIAEIRSAVEKGSRLLSSMTLKLYEKPQLWKEGQ 60

Query: 252  GGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKC 311
            G     ++ ++  ++PI I+F ALG+ SD++I++ I F   D  ++  +  SI ++    
Sbjct: 61   GACLYATLPYVKADVPIPIVFRALGIVSDEDIISHICFDKNDTQLMEAIRPSIEESVLIQ 120

Query: 312  DEFRKGRNALKYVDKLIKGTTFPPGESTEE-------CMNTYLFPSLHGTK----QKARF 360
            D      +AL ++ +  +G+    G +  E        +     P +   +    +KA F
Sbjct: 121  DRV----SALDFIGR--RGSNPSTGGTKRERVKLARDIIQKEFLPHISQAEGSETKKAFF 174

Query: 361  LGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLY 420
            LGYM+  LLQ + GRR  D+RD F  KRL+LAG LL    +       + +   L++ + 
Sbjct: 175  LGYMIYRLLQCHLGRRDEDDRDHFGKKRLDLAGPLLANLFRSLFLKLTRDVFSYLKKCVE 234

Query: 421  GDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLR 480
              R    ++  +    +TNGL  + +TG W    K     +G+   L R     TL  LR
Sbjct: 235  AGRPFS-LQSAVKQGTITNGLKYSLATGNWGDQKKAASAKAGVSQVLNRYTYSSTLSHLR 293

Query: 481  RTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFE 539
            RT   +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   V+  S + PI +
Sbjct: 294  RTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMCNVTVGSDVTPIQD 353

Query: 540  QLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIK 599
             +    ME L +          K+F++G W+GV +D    VS +++ RR   L  ++ + 
Sbjct: 354  FMTQRNMELLEEYEPNVSPHATKIFINGVWVGVHRDPTQLVSVVKKLRRDGTLSPEMSLI 413

Query: 600  RDELQSEVRIFMDAGRILRPLLVVE------NMGK-------IKSLEG------------ 634
            RD    E +IF DAGR+ RPL +++      N G        I  LE             
Sbjct: 414  RDVRDREFKIFTDAGRVCRPLFIIDDDPFSPNKGNLALTREHIDKLEADQEIDVSGLSDE 473

Query: 635  ----KNYTFQALLDHGIIELVGTEEEE---------DCCTAWGIKYLLKDIEDKKPIK-- 679
                K Y +Q LL  G++E +  EEEE         D       +  + D +D++  +  
Sbjct: 474  ERQEKRYGWQGLLHSGVVEYMDAEEEEVAMIVMTPDDLRAHHRARQGIIDEDDEETKRNR 533

Query: 680  ----------------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGF 723
                            +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G 
Sbjct: 534  DPHERVVPPPNPSVKQYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQS-AMGKQAMGV 592

Query: 724  PTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNV 783
              TN  +R+DT+ + L+YPQ+PL  T   + L              EL  GQNAIVA+  
Sbjct: 593  CLTNYELRMDTMVNVLYYPQKPLATTRSMEYLR-----------FRELPAGQNAIVAIAC 641

Query: 784  HLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIG 843
            + GYNQEDS++MN++S++RG+FRS   RSY  +     M V  +    M +   ++ K G
Sbjct: 642  YSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQEKKVGMAVVEQFEKPMRS-DTMRLKHG 700

Query: 844  RVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH---------------SIKLKHTERGM 888
              D LDDDG    G  +   DI+IGK A    D                S  L+ TE G+
Sbjct: 701  TYDKLDDDGVVAPGVRVSGEDIIIGKTAPIAPDAEELGQRTKMHIKRDVSTPLRSTENGI 760

Query: 889  VQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVP 948
            V  V+L++N DG  F  V  R  + P +GDKF+S HGQKG +G     E+ PFT +G+ P
Sbjct: 761  VDSVLLTTNSDGLKFVKVRTRTTKIPQIGDKFASRHGQKGTIGITYRHEDMPFTREGLTP 820

Query: 949  DIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRA 1008
            D++INPHA PSR T   L+E  L K       G   G +  ATPF   +V  ++  L   
Sbjct: 821  DLIINPHAIPSRMTIAHLIECLLSK------VGALRGXEGDATPFTDVTVXQVSSLLREH 874

Query: 1009 GFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADR 1068
            G+   G E +Y+G TG+ + + +F+GPT+YQRL HM +DK+  R  GPV  LTRQPV  R
Sbjct: 875  GYQSRGFEIMYNGHTGKKLTAQVFLGPTYYQRLRHMVDDKIHARARGPVQILTRQPVEGR 934

Query: 1069 KRFGGIKF 1076
             R GG++F
Sbjct: 935  ARDGGLRF 942


>gi|407844014|gb|EKG01762.1| DNA-directed RNA polymerase III subunit, putative [Trypanosoma cruzi]
          Length = 1130

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 349/1182 (29%), Positives = 546/1182 (46%), Gaps = 131/1182 (11%)

Query: 38   GLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPS 97
            GL++H I S++  I   L++   +     ++   DP           S+R+  + + +P 
Sbjct: 29   GLLNHHIASFDHLINVELKRILLNESNREIKSSIDPD---------FSIRYTNIRVCQPR 79

Query: 98   FFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVL 157
               G G     + P   R +++TY   M V V++              T R++   K   
Sbjct: 80   EIVGKGQLPKVVSPHECRTRDLTYRGDMIVDVEY--------------TSRDR--NKRPC 123

Query: 158  SDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQI 211
            ++  T+I IG IP+M+KS  C + G      V   +C  D GGYFIIKG EKV + QEQ 
Sbjct: 124  TE--TDIKIGTIPIMLKSSSCNLFGKTREELVAMRECPLDPGGYFIIKGVEKVCLVQEQQ 181

Query: 212  CLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWIL 271
               R+ +       +    ++K +  I +          K G  V+       +IPI ++
Sbjct: 182  SKNRVIIEADDNGNIVAHVQSKTHYSISKCS-----VTFKKGRIVMVHRSFKEDIPIVVM 236

Query: 272  FFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGT 331
              ALG+ SD++I   I  T    +  ++LFA    A       +   +AL ++ +  K T
Sbjct: 237  LKALGMESDQQIAQHIGTT---PAFESVLFACFEQA--AALGVKTQDDALHFIGERRKET 291

Query: 332  TF------------PPGESTEECMNTYLFPSLH--------GTKQKARFLGYMVKCLLQA 371
            ++               ++  E +   L   +           + KA ++ +MV+ +++A
Sbjct: 292  SWEVDDAQQRHIQKSKADNAAEFLGNVLLCHIREGQVQRDWNFRHKALYVCFMVRRMIEA 351

Query: 372  YSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRP--IE 429
                   D RD + NKR E  G L+    +  +    + +  A+ + L    T +P  ++
Sbjct: 352  SVDSSLLDERDFYGNKRFETTGTLMGLLFEDLLKQFNRVVKTAMDQQLSKKDTTKPFNVK 411

Query: 430  YYLDA--SILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQ 487
              +++   ++ +G+  A S+G W        R  GI   L R + +  +  + R     +
Sbjct: 412  QLMESKLEVIQSGMRVALSSGRWELKRFNMSR-QGITQVLSRLSYIACIGMMTRLASSFE 470

Query: 488  YTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEP-IFEQLFNSGM 546
             + K+   R   PS WG +C   TP+GE+CGLVKN G+   V+  + +  +     N G+
Sbjct: 471  KSRKISGPRSLQPSQWGMVCPCDTPEGESCGLVKNFGILSQVTLDMDDSFVRAAAHNLGV 530

Query: 547  EKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSE 606
            E++   +S      + VF++G  IG+ +        +R  RR   L   V I  ++ Q  
Sbjct: 531  EEVDSISSREFLNYYTVFLNGTLIGIHRYPNRLCRGVRALRRSGRLHPHVSIAINDRQKS 590

Query: 607  VRIFMDAGRILRPLLVVENM------GKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCC 660
            V+I  D GRI+R  +VV +         +  L     +    L  G++E +   E  DC 
Sbjct: 591  VQIGCDGGRIVRLYIVVNHAKPAVTSAHLDQLSAGQCSINDFLAEGLVEFIDVNEANDCL 650

Query: 661  TAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQA 720
                I    +DIE       TH E++   LLG+  GIIPF +H+ + R  +QS     QA
Sbjct: 651  ----IAVYPRDIETYT----THLEVEPLSLLGVVAGIIPFPHHNQSARNTFQSAM-GKQA 701

Query: 721  IGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVA 780
            +G    N  IR DT+     YPQRPL RT   D           +    +L  G NA+V 
Sbjct: 702  LGTIAYNQYIRTDTVLMVGAYPQRPLCRTKAMD-----------LTHYEKLGAGINAMVC 750

Query: 781  VNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQS 840
            V  + GY+ ED+ V NR SL+RG  R   +R  K EVD     ++R  + +        S
Sbjct: 751  VMSYSGYDIEDAQVYNRCSLDRGYGRCVVLR--KHEVD-----LERLPNGEYEIILPPDS 803

Query: 841  KIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA----DHSIKLKHTERGMVQKVV-LS 895
              G+  +L+ DG    GA ++  DI++ KY    +     + +  K+ +  +V  VV L 
Sbjct: 804  NAGKCKALNSDGIASKGAIVRQFDILVNKYTPVASLEPRPNPLVYKYPQPAVVDHVVILP 863

Query: 896  SNDDGKNFSV-----VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDI 950
              D  ++  V     V  R+VR P  GDKFSS HGQKGV+G +    N PF  +GI PD+
Sbjct: 864  PGDSERSMDVEQKIKVITREVRVPEPGDKFSSRHGQKGVVGLITDGVNMPFNEKGISPDM 923

Query: 951  VINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGF 1010
            ++NPH FPSR T G+LLE    K ++AL      G     T F   + + +   L R GF
Sbjct: 924  IMNPHGFPSRMTVGKLLELVSSK-VSALTGTFGDG-----TAFGGDNAEDLGMHLLRNGF 977

Query: 1011 SKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKR 1070
            +  G +  Y G TGE++++ +F GP +YQRL HM  DK+  R TGP   LTRQP   R R
Sbjct: 978  NYHGKDVFYSGITGEIMQAYVFFGPIYYQRLKHMVTDKMHARATGPRSMLTRQPTEGRSR 1037

Query: 1071 FGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVR 1130
             GG++ GEMERDC++ +GA+  L+ERL   SD + +  CR C  +               
Sbjct: 1038 SGGLRVGEMERDCMVGYGASNLLNERLLLSSDLFTVDTCRSCGFLGYC------------ 1085

Query: 1131 GPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTEF 1172
              YC  C++ + +   NVPY  KLL QEL  MGI+ +   +F
Sbjct: 1086 -GYCPYCNTKNTVSHVNVPYAFKLLLQELQGMGISTRLSLDF 1126


>gi|47156951|gb|AAT12334.1| DNA-directed RNA polymerase III subunit 2 130KDa subunit [Antonospora
            locustae]
          Length = 1014

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 332/1097 (30%), Positives = 531/1097 (48%), Gaps = 135/1097 (12%)

Query: 108  DMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIG 167
            D+ P   RL+++TY   + V +++  +             R+  I+K        N+ IG
Sbjct: 5    DVLPEECRLRDLTYCGNIYVDIEYTKH-------------RKVIIKK--------NVFIG 43

Query: 168  RIPVMVKSDLCWMKGVEKGD-------------CDFDHGGYFIIKGAEKVFVAQEQICLK 214
            ++P+M++S LC ++  EK D             C  D GGYFI+KG E+V + QEQ+   
Sbjct: 44   KVPIMLRSMLCHLE--EKRDDCETVRETYGHRECPLDMGGYFIVKGVERVILIQEQLSKN 101

Query: 215  RLWVS-NSMGW---TVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWI 270
            R+    ++ G    +V   + +K+++  + L         K     L     +  +P  I
Sbjct: 102  RIIADIDNKGCKFTSVTSSTHDKKSKTSIIL---------KKRLLYLKNNVFTDSVPAVI 152

Query: 271  LFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKG 330
            +  ALG+ SD EI    +F  ++ ++L +L  S+  A            AL ++ KL + 
Sbjct: 153  VLKALGMVSDCEIA---EFVGQEGALLEMLEPSLEHALQT--GVHTQLQALDFISKLTRP 207

Query: 331  -TTFPPGESTEECMNTYLFPSLHG----TKQKARFLGYMVKCLLQAYSGRRKCDNRDDFR 385
                   +     +   + P++       ++KA  +  M++ LLQA       D+ D   
Sbjct: 208  RQNVSRIDEARTILYEVVLPNIPNDGIDMRRKAITVAIMIRVLLQAELNMISMDDIDFLG 267

Query: 386  NKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYY----LDASILTNGL 441
            NKR ELAG LL    +         + K++ + L   +  + ++      L  ++++N  
Sbjct: 268  NKRFELAGNLLSILFEDTFLRFNSELKKSIDKVLSKSQRTQDLDALTFLNLQVNLISNSF 327

Query: 442  SRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPS 501
             RA STG W+    R ER +G+   L R + +  +  + + + Q + T K+   R  H S
Sbjct: 328  VRAISTGNWTVRRFRMER-AGVTQVLSRLSYIAMIGSMAKIQSQFEKTRKISGPRSLHTS 386

Query: 502  HWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQL-FNSGMEKLADDASYSLGGK 560
             WG +C   TP+GE+CGLVKNL +   ++T + +   EQL F  G+      +      K
Sbjct: 387  SWGMLCPADTPEGESCGLVKNLAILAEITTDVPQSDVEQLLFQLGVRDFRTCSGIDFYSK 446

Query: 561  --FKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILR 618
              + +F++G  +G+C ++ + V +    RRR  +   V + +++ +  + I  D GRI R
Sbjct: 447  HSYLIFLNGTIVGICYNNNTLVRKFVEMRRRGVVSQFVSVYKNDEKRTISIATDGGRICR 506

Query: 619  PLLVVEN---MGKIKSLEGKNYTFQA---LLDHGIIELVGTEEEEDCCTAWGIKYLLKDI 672
            PL++VEN   M + + LE     ++    L   G +E +   EE +   A     + +  
Sbjct: 507  PLIIVENGRQMLEHEDLELLRRRYKNPDDLFKEGKVEFLDVNEENNTKIALRESNICRST 566

Query: 673  EDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRV 732
                    TH E+    +LG   G+IP+ +H+ + R  YQ      QA+GF   N   R 
Sbjct: 567  --------THLEICEYSILGCVAGLIPYPHHNQSPRNTYQC-AMGKQAMGFVALNQYRRF 617

Query: 733  DTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDS 792
            DTL + L YPQ+PL  T I+D           I+   +L  GQN +VAV  + GY+ ED+
Sbjct: 618  DTLLNLLVYPQKPLVSTKITD-----------IVNFEKLPAGQNGMVAVMAYAGYDIEDA 666

Query: 793  LVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVD-SLDDD 851
            L++N+ +L+RG  R E  RSYK  +        +R S+ M +         R+  S   D
Sbjct: 667  LIINKGALDRGFGRCEVYRSYKHSL--------KRYSNGMCD---------RISGSKHSD 709

Query: 852  GFPFIGANLQSGDIVIGKYA---DSGADHSIKL-KHTERGMVQKVVLSSNDDGKNFSVVS 907
            G    G  +  GD  + K +   D+    S +L K+    +V KV+++ + + +      
Sbjct: 710  GVRGPGERVFDGDFFVYKESPTEDADFKFSGELYKNLSPSVVDKVIVARSGEDQFMVKTC 769

Query: 908  LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLL 967
            LRQVR P +GDKFSS HGQKGV+G +  + + PF+  G VPDI++NPH FPSR T G+++
Sbjct: 770  LRQVRQPEVGDKFSSRHGQKGVIGLVVPETDLPFSEDGQVPDIIMNPHGFPSRMTVGKII 829

Query: 968  EAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMV 1027
            E   GK        + +G +  AT F     + ++  L + G+S  G +   +G TG++ 
Sbjct: 830  ELISGKA------AVFTGRQSDATVFREDITEDLSHILIKHGYSYCGKDTFTNGITGDVY 883

Query: 1028 RSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAH 1087
               +F GP +YQRL HM  DK+  R+ GP   LTRQP   + R GG++ GEMERDCLI +
Sbjct: 884  EGYVFFGPVYYQRLKHMVADKMHARSRGPRAMLTRQPTEGKSREGGLRLGEMERDCLIGY 943

Query: 1088 GAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKAN 1147
            GA+A L ERL   SD ++ +IC +C             G  V    C +C  GD  V  +
Sbjct: 944  GASAILCERLMISSDVFRAYICHRC-------------GIIVYKNMCTLCKRGDP-VPVD 989

Query: 1148 VPYGAKLLCQELFSMGI 1164
            +PY  KLL QEL SM I
Sbjct: 990  MPYACKLLFQELMSMNI 1006


>gi|68131824|gb|AAY85190.1| RNA polymerase II second largest subunit [Aextoxicon punctatum]
          Length = 873

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 302/910 (33%), Positives = 472/910 (51%), Gaps = 102/910 (11%)

Query: 109 MFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGR 168
           +FP+ ARL+N+TYS+ + V V       KRV     K G +   ++   + + T + IG+
Sbjct: 5   LFPKAARLRNLTYSAPLYVDVT------KRV----IKKGHD--CEEVTETQDFTKVFIGK 52

Query: 169 IPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV---- 218
           +P+M++S  C +         E G+C FD GGYFII G+EKV +AQE++    ++V    
Sbjct: 53  VPIMLRSSYCTVYQNSEKDLTELGECPFDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 112

Query: 219 -SNSMGWTVAYKS-ENKRNR----LIVRLVDMSKFEDIKGGEKV-LSVYFLSTEIPIWIL 271
             N   +    +S    +NR    + VR++  +  +    G+ +  ++ ++ TEIPI I+
Sbjct: 113 QPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIV 172

Query: 272 FFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGT 331
           F ALG  +DK+I+  I +   D  ++ +L  S+ +A       +  + AL Y+ K  +G+
Sbjct: 173 FRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAF----VIQNHQVALDYIGK--RGS 226

Query: 332 TFPPGESTE-------ECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRRKCDN 380
           T   G + E       E +   + P +    +   +KA + GY++  LL    GRR  D+
Sbjct: 227 TV--GVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDD 284

Query: 381 RDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNG 440
           RD + NKRL+LAG LL    ++      + +   +Q+ +   + V  +++ + A  +T+G
Sbjct: 285 RDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN-LQFAIKAKTITSG 343

Query: 441 LSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHP 500
           L  + +TG W        R +G+   L R     TL  LRR    +   GK+   R  H 
Sbjct: 344 LKYSLATGNWGQANAAGTR-AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHN 402

Query: 501 SHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGG 559
           SHW  +C   TP+G+ CGLVKNL +   ++  S   PI E L     E   + +   +  
Sbjct: 403 SHWXMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQ 462

Query: 560 KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRP 619
             K+FV+G W+G+ ++    V  LR+ RR+ ++ T+V + RD    E+R++ D GR  RP
Sbjct: 463 ATKIFVNGCWVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRP 522

Query: 620 LLVVENM------GKIKSLEGKNYT----FQALLDHGIIELVGTEEEEDCCTAWGIKYLL 669
           L +VE          I++L+ +       +  L+  G IE V TEEEE    +  I  L+
Sbjct: 523 LFIVEKQRLLIKKKDIQALQQRESHEEGGWHDLVAKGFIEYVDTEEEETTMISMTINDLI 582

Query: 670 K---DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTT 726
               + E+     +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   T
Sbjct: 583 TARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGIYVT 641

Query: 727 NPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLG 786
           N  +R+DTL++ L+YPQ+PL  T   + L      H   LP      G NAIVA++ + G
Sbjct: 642 NYQLRMDTLAYVLYYPQKPLVTTRAMEHL------HFRQLP-----AGINAIVAISCYSG 690

Query: 787 YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK------IQS 840
           YNQEDS++MN++S++RG FRS   RSY+ E       VK        +FG+      +  
Sbjct: 691 YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE-------DFGRPNRENTMGM 743

Query: 841 KIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD-------------SGADHSIKLKHTERG 887
           + G  D LDDDG    G  +   D++IGK                +  DHS  L+H+E G
Sbjct: 744 RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRRDHSTSLRHSESG 803

Query: 888 MVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIV 947
           MV +V+L++N DG  F  V +R VR P +GDKFSS HGQKG +G   +QE+ P+T++GI 
Sbjct: 804 MVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 863

Query: 948 PDIVINPHAF 957
           PDI++NPHA 
Sbjct: 864 PDIIVNPHAI 873


>gi|45545317|gb|AAS67506.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Ceramothyrium linnaeae]
          Length = 936

 Score =  448 bits (1152), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 300/898 (33%), Positives = 443/898 (49%), Gaps = 116/898 (12%)

Query: 261  FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNA 320
            ++  +IP+ I+F AL + SD +I+  I F   D  ++++L  S+        E +  + A
Sbjct: 73   YVKQDIPLAIVFRALDIVSDTDILEKICFDQRDQEMMDMLMGSLQ-------EGQPIQGA 125

Query: 321  LKYVDKLIKGTTFPPGESTE------ECMNTYLFPSL----HGTKQKARFLGYMVKCLLQ 370
                D + +    P  +S E      + +     P +      T +KA FLGYMV  +L+
Sbjct: 126  DLARDYIARRGNVPSLKSHERQKHAIDILTKEFLPHIGQTSDATARKAFFLGYMVNRMLK 185

Query: 371  AYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEY 430
               GR + D+RD    KRL+L+G L+    ++ +  A K   + +Q+ +   +T+  I+ 
Sbjct: 186  CALGRTEPDDRDHLGKKRLDLSGPLMANLFRMQLDKATKDFFRYMQKRVESGQTI-AIKA 244

Query: 431  YLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTG 490
                +I+TNGL  + +TG W    K  +  +G+   L R     TL  LRRT   +   G
Sbjct: 245  GWKPNIVTNGLKYSLATGNWGDQKKLDKAKAGVSQVLSRYTFASTLSHLRRTNAPIGREG 304

Query: 491  KVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-LEPIFEQLFNSGMEKL 549
            K+   R  H +HWG +C   TP+G+ CGLVKNL +  +V+      P+   +    +E L
Sbjct: 305  KIAKPRQLHNTHWGYVCPAETPEGQACGLVKNLALMSMVTNHYDTAPLQSYILEKNVEAL 364

Query: 550  ADDASYSLGGKFKVFVDGDWIGVC-KDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVR 608
             D   +      KVFV+G W  V  KD    V   R  RRR  + T+V +  D    E +
Sbjct: 365  EDWEPHLNPQATKVFVNGVWFAVILKDPKFLVDHFRMLRRRGTIDTEVSLVWDIRDKEFK 424

Query: 609  IFMDAGRILRPLLVVE-------------NMGKIKSLEGKNYTFQA-------------- 641
            I  D+GRI+RPL +VE             N   I  L+   Y  +               
Sbjct: 425  ISGDSGRIIRPLFIVETDRSSDNHGNLVLNKEHIAKLDETAYHMEQEMGEPADGYYRWLD 484

Query: 642  LLDHGIIELVGTEEEEDCCTAWGIKYLLKDIE---------DKKPIK------------F 680
            LL  G+IE +  EEEE        + LL             D  P++            F
Sbjct: 485  LLADGVIEYLDAEEEETVMIVMSPEALLDSRNAQMGQPPEPDDDPLRRNDPLLNPHAHTF 544

Query: 681  THCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLF 740
            THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN   R++T+++ L+
Sbjct: 545  THCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAM-GKQAMGIFLTNFDQRMETMANILY 603

Query: 741  YPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASL 800
            YPQ+PL RTM  + L              EL  GQNAIVA+  + GYNQEDS++MN++S+
Sbjct: 604  YPQKPLARTMAMEYLK-----------FRELPAGQNAIVAIATYSGYNQEDSVIMNQSSI 652

Query: 801  ERGMFRSEHIRSYKAEVDNKEM-------QVKRRSSDDMVNFGKIQSKIGRVDSLDDDGF 853
            +RG+FRS   R+Y+   D ++M       Q ++ +  D +       K G  D LDDDG 
Sbjct: 653  DRGLFRSLFYRAYQ---DQEKMIGHAVVEQFEKPTRSDTLRL-----KHGTYDKLDDDGI 704

Query: 854  PFIGANLQSGDIVIGKYADSGADH---------------SIKLKHTERGMVQKVVLSSND 898
               G  +   DI++GK A    D                S  L+ TE G++ +V+L++  
Sbjct: 705  VAPGVRVSGEDIIMGKTAPMAPDAEELGQRMKQHIKRDVSTPLRSTESGVIDQVLLTTTG 764

Query: 899  DGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFP 958
            DG  F+ V +R  + P +GDKF+S HGQKG +G     E+ PFT +GIVPD++INPHA P
Sbjct: 765  DGCKFAKVRVRTTKVPQIGDKFASRHGQKGTIGITYRHEDMPFTREGIVPDLIINPHAIP 824

Query: 959  SRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERL 1018
            SR T   L+E  L K       G   G +  ATPF   +V  I+  L   G+ + G E +
Sbjct: 825  SRMTIAHLIECLLSK------VGALRGDEGDATPFTKVTVTQISSILENMGYQRRGFEVM 878

Query: 1019 YDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKF 1076
            Y+G TG  + + +F+GPT+YQRL HM +DK+  R  GP   LTRQPV  R R GG++F
Sbjct: 879  YNGHTGRKLVAQVFLGPTYYQRLRHMVDDKIHSRARGPTQILTRQPVEGRARDGGLRF 936


>gi|45545359|gb|AAS67527.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Aureobasidium pullulans]
          Length = 937

 Score =  447 bits (1151), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 301/893 (33%), Positives = 447/893 (50%), Gaps = 105/893 (11%)

Query: 261  FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNA 320
            ++  +IP+ I+F AL + SD +I+  I F   D  +L++L  S+ +        +    A
Sbjct: 73   YVKQDIPLVIVFRALDIVSDADILEKICFDQSDKEMLDMLMGSLQEGQ----PIQGADLA 128

Query: 321  LKYVDKLIKGTTFPPGESTEECMNTY---LFPSLHG----TKQKARFLGYMVKCLLQAYS 373
              ++ +     T    E  +  M+       P +        +KA FLGYMV  LL+   
Sbjct: 129  RDFIARRGNIPTLKSHERQKHAMDILQKEFLPHIGQGPDVAARKAFFLGYMVNRLLKCAL 188

Query: 374  GRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLD 433
            GR + D+RD    KRL+LAG L+    ++    A K   + +Q+ +   + +  I     
Sbjct: 189  GRAEPDDRDHLGKKRLDLAGPLMTNLFRLQFDKATKDFFRYMQKRVEAGQAIN-IHAGFK 247

Query: 434  ASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVG 493
              I+T+GL  + +TG W    K  +  +G+   L R     TL  LRRT   +   GK+ 
Sbjct: 248  HPIVTSGLKYSLATGNWGDQKKLDKAKAGVSQVLSRYTFASTLSHLRRTNAPIGREGKIA 307

Query: 494  DARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKLADD 552
              R  H +HWG +C   TP+G+ CGLVKNL +  +V+ S    P+   +    +E L D 
Sbjct: 308  KPRQLHNTHWGYVCPAETPEGQACGLVKNLSLMSMVTNSYETLPLMNYVLTKHVEALEDW 367

Query: 553  ASYSLGGKFKVFVDGDWIGVC-KDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFM 611
                     KVFVDG W  V  +D    V +LR+ RR+    +QV +  D  + E +I  
Sbjct: 368  EPRLNPQATKVFVDGVWFAVVLRDPKRLVDDLRKLRRKGVFDSQVSLVWDIREKEFKISG 427

Query: 612  DAGRILRPLLVVE------NMGKIK----------------------SLEGKNYTFQALL 643
            D+GRI+RPL VVE      N+G +                       + E K Y +Q LL
Sbjct: 428  DSGRIVRPLFVVETDRASENLGNLVLNKDHITKIDQTNYLKESGFNFTDEFKPYGWQDLL 487

Query: 644  DHGIIELVGTEEEE--------DCCTAWGIKYLLKDIE-DKKPIK------------FTH 682
            + G++E +  EEEE        +       ++L  +IE +  P+             FTH
Sbjct: 488  ESGVVEYLDAEEEETAMLVMTPEALADSKARWLGMEIESEDDPLSRNDPLLNPHSHTFTH 547

Query: 683  CELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYP 742
            CE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN   R++T+++ L+YP
Sbjct: 548  CEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVFLTNFDQRMETMANILYYP 606

Query: 743  QRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLER 802
            Q+PL RTM  D L              EL  GQNAIVA+  + GYNQEDS++MN++S++R
Sbjct: 607  QKPLARTMAMDYLK-----------FRELPAGQNAIVAIATYSGYNQEDSVIMNQSSIDR 655

Query: 803  GMFRSEHIRSY----KAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGA 858
            G+FRS   R+Y    K+   +   Q +R +  D +       K G  D +D+DG    G 
Sbjct: 656  GLFRSLFYRAYQDQEKSVGHSVVEQFERPTRADTLRL-----KHGTYDKIDEDGIVAPGV 710

Query: 859  NLQSGDIVIGKYADSGADH---------------SIKLKHTERGMVQKVVLSSNDDGKNF 903
             +   DI++GK A    D                S  L+ TE G+V +V+L++  DG  F
Sbjct: 711  RVSGEDIIMGKTAPMAPDAEELGQRQKQHVKRDVSTPLRSTESGIVDQVMLTTTSDGHRF 770

Query: 904  SVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTP 963
            + V +R  + P +GDKF+S HGQKG +G     E+ PFT  GIVPD++INPHA PSR T 
Sbjct: 771  AKVRVRTTKVPQIGDKFASRHGQKGTIGITYRHEDMPFTRGGIVPDLIINPHAIPSRMTI 830

Query: 964  GQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRT 1023
              L+E  L K +A L      G +  ATPF   +V  +++ L + G+   G E +Y+G T
Sbjct: 831  AHLIECQLSK-VATL-----RGDEGDATPFTKVTVTQVSDLLRKMGYQSRGFEVMYNGHT 884

Query: 1024 GEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKF 1076
            G  + + +F+GPT+YQRL HM +DK+  R  GP   LTRQPV  R R GG++F
Sbjct: 885  GRKLVAQVFLGPTYYQRLRHMVDDKIHSRARGPTQILTRQPVEGRARDGGLRF 937


>gi|68131876|gb|AAY85216.1| RNA polymerase II second largest subunit [Hibbertia scandens]
          Length = 873

 Score =  447 bits (1151), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 301/910 (33%), Positives = 472/910 (51%), Gaps = 102/910 (11%)

Query: 109 MFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGR 168
           +FP+ ARL+N+TYS+ + V V       KR+     K G +   ++   + +   + IG+
Sbjct: 5   LFPKAARLRNLTYSAPLYVDVT------KRI----IKKGHD--CEEVTETQDFAKVFIGK 52

Query: 169 IPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV---- 218
           +P+M++S  C +         E G+C FD GGYFII G+EKV +AQE++    ++V    
Sbjct: 53  VPIMLRSSYCTVYQNSEKDLTELGECPFDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 112

Query: 219 -SNSMGWTVAYKS-ENKRNR----LIVRLVDMSKFEDIKGGEKV-LSVYFLSTEIPIWIL 271
             N   +    +S    +NR    + VR++  +  +    G+ V  ++ ++ TEIPI I+
Sbjct: 113 QPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYVRATLPYIRTEIPIIIV 172

Query: 272 FFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGT 331
           F ALG  +DK+I+  I +   D  ++ +L  S+ +A       +  + AL Y+ K  +G+
Sbjct: 173 FRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAF----VIQNQQVALDYIGK--RGS 226

Query: 332 TFPPGESTE-------ECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRRKCDN 380
           T   G + E       E +   + P +    +   +KA + GY++  LL    GRR  D+
Sbjct: 227 TV--GVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDD 284

Query: 381 RDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNG 440
           RD + NKRL+LAG LL    ++      + +   +Q+ +   + V  +++ + A  +T+G
Sbjct: 285 RDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN-LQFAIKAKTITSG 343

Query: 441 LSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHP 500
           L  + +TG W        R +G+   L R     TL  LRR    +   GK+   R  H 
Sbjct: 344 LKYSLATGNWGQANAAGTR-AGVSQVLNRLTYSSTLSHLRRLNSPIGREGKLAKPRQLHN 402

Query: 501 SHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGG 559
           SHWG +C   TP+G+ CGLVKNL +   ++  S   PI E L     E   + +   +  
Sbjct: 403 SHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQ 462

Query: 560 KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRP 619
             K+FV+G W+G+ ++    V  LR+ RR+ ++ T+V + RD    E+R++ D GR  RP
Sbjct: 463 ATKIFVNGCWVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRP 522

Query: 620 LLVVENM------GKIKSLEGKNYT----FQALLDHGIIELVGTEEEEDCCTAWGIKYLL 669
           L +VE          I++L+ +       +  L+  G IE V TEEEE    +  I  L+
Sbjct: 523 LFIVEKQRLLIKKKDIRALQQRESPEDGGWHDLVAKGFIEYVDTEEEETTMISMTINDLV 582

Query: 670 K---DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTT 726
               + E+     +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   T
Sbjct: 583 TARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGIYVT 641

Query: 727 NPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLG 786
           N  +R+DTL++ L+YPQ+PL  T   + L      H   LP      G N+IVA+  + G
Sbjct: 642 NYQLRMDTLAYVLYYPQKPLVTTRAMEHL------HFRQLP-----AGINSIVAIACYSG 690

Query: 787 YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK------IQS 840
           YNQEDS++MN++S++RG FRS   RSY+ E       VK        +FG+      +  
Sbjct: 691 YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE-------DFGRPNRENTMGM 743

Query: 841 KIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD-------------SGADHSIKLKHTERG 887
           + G  D LDDDG    G  +   D++IGK +              +  DHS  L+H+E G
Sbjct: 744 RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAQDDAQGVSSRYTRRDHSTSLRHSESG 803

Query: 888 MVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIV 947
           MV +V+L++N DG  F  V +R VR P +GDKFSS HGQKG +G   +QE+ P+T++GI 
Sbjct: 804 MVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 863

Query: 948 PDIVINPHAF 957
           PDI++NPHA 
Sbjct: 864 PDIIVNPHAI 873


>gi|68131850|gb|AAY85203.1| RNA polymerase II second largest subunit [Dicentra formosa]
          Length = 873

 Score =  447 bits (1151), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 301/910 (33%), Positives = 470/910 (51%), Gaps = 102/910 (11%)

Query: 109 MFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGR 168
           +FP+ ARL+N+TYS+ + V V       KR+     K G +   ++   + E   + IG+
Sbjct: 5   LFPKAARLRNLTYSAPLYVDVT------KRI----IKKGHD--CEEVTETQEFKKVFIGK 52

Query: 169 IPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV---- 218
           +P+M++S  C +         E G+C +D GGYFII G+EKV +AQE++    ++V    
Sbjct: 53  VPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 112

Query: 219 -SNSMGWTVAYKS-ENKRNR----LIVRLVDMSKFEDIKGGEKV-LSVYFLSTEIPIWIL 271
             N   +    +S    +NR    + VR++  +  +    G+ +  ++ ++ TEIPI I+
Sbjct: 113 QPNKYAYVAEVRSMAESQNRPPSSMFVRMLSRASAKGGSSGQYIRATLPYIRTEIPIIIV 172

Query: 272 FFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGT 331
           F ALG  +DK+I+  I +   D  ++ +L  S+ +A       +  + AL Y+ K  +G+
Sbjct: 173 FRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAF----VIQNQQVALDYIGK--RGS 226

Query: 332 TFPPGESTE-------ECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRRKCDN 380
           T   G + E       E +   + P +    +   +KA + GY++  LL    GRR  D+
Sbjct: 227 TV--GVTKEKRIKYAREILQKEMLPHVGIGEYCETKKAYYFGYIIHRLLLCALGRRPEDD 284

Query: 381 RDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNG 440
           RD + NKRL+LAG LL    ++      + +   +Q+ +   + V  +++ + A  +T+G
Sbjct: 285 RDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVN-LQFAIKAKTITSG 343

Query: 441 LSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHP 500
           L  + +TG W        R +G+   L R     TL  LRR    +   GK+   R  H 
Sbjct: 344 LKYSLATGNWGQANAAGTR-AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHN 402

Query: 501 SHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGG 559
           SHWG +C   TP+G+ CGLVKNL +   ++  S   PI E L     E   + +   +  
Sbjct: 403 SHWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQ 462

Query: 560 KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRP 619
             K+FV+G W+G+ ++    V  LR  RR+ ++ T+V + RD    E+R++ D GR  RP
Sbjct: 463 STKIFVNGCWVGIHRNPELLVKTLRALRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRP 522

Query: 620 LLVVENMG------KIKSLEGKNYT----FQALLDHGIIELVGTEEEEDCCTAWGIKYLL 669
           L +VE          I++L+ +       +  L+  G IE V TEEEE    +  I  L+
Sbjct: 523 LFIVEKQRLLIKKRDIRALQLRESPDEGGWHDLVAKGYIEYVDTEEEETTMISMTINDLV 582

Query: 670 K---DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTT 726
               + E+     +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   T
Sbjct: 583 SARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGIYVT 641

Query: 727 NPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLG 786
           N  +R+DTL++ L+YPQ+PL  T   + L      H   LP      G NAIVA+  + G
Sbjct: 642 NYQLRMDTLAYVLYYPQKPLVTTRAMEHL------HFRQLP-----AGINAIVAIACYSG 690

Query: 787 YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK------IQS 840
           YNQEDS++MN++S++RG FRS   RSY+ E       VK        +FG+      +  
Sbjct: 691 YNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE-------DFGRPNRENTMGM 743

Query: 841 KIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD-------------SGADHSIKLKHTERG 887
           + G  D LDDDG    G  +   D++IGK                +  DHS  L+H+E G
Sbjct: 744 RHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPIAQDESQGQASRYTRRDHSTSLRHSESG 803

Query: 888 MVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIV 947
           MV +V+L++N DG  F  V +R VR P +GDKFSS HGQKG +G   +QE+ P+T++GI 
Sbjct: 804 MVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGIT 863

Query: 948 PDIVINPHAF 957
           PDI++NPHA 
Sbjct: 864 PDIIVNPHAI 873


>gi|157868405|ref|XP_001682755.1| putative DNA-directed RNA polymerase polypeptide [Leishmania major
            strain Friedlin]
 gi|68126211|emb|CAJ03500.1| putative DNA-directed RNA polymerase polypeptide [Leishmania major
            strain Friedlin]
          Length = 1132

 Score =  447 bits (1150), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 357/1208 (29%), Positives = 559/1208 (46%), Gaps = 132/1208 (10%)

Query: 9    TDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVE 68
            T   ++ D G+E+ +        +     G+++H I S++  I+  LQ+   +     ++
Sbjct: 3    TGAHAMSDFGDEYQRKKLEMLP-ALMGMRGILNHHIASFDHLIEVELQRILLNESNVEIK 61

Query: 69   PGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVK 128
               DP            +R+  + + +P    G G     + P+  R+++MTY   M V 
Sbjct: 62   STVDPD---------FVIRYQNIRICRPQEIVGKGHIPKLVTPQECRIRDMTYRGDMIVD 112

Query: 129  VQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM------KG 182
            VQ+        + D+    R   ++K+V         IG IP+M+KS  C +      + 
Sbjct: 113  VQY-------TSRDR---SRAMLVEKDVK--------IGTIPIMLKSKCCNLYRKTREEL 154

Query: 183  VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLV 242
            V   +C  D GGYFIIKG EKV + QEQ    R+ +       ++   ++K +  I +  
Sbjct: 155  VNMRECPLDPGGYFIIKGVEKVCLVQEQQSKNRVIIEADEHGNISAHVQSKTHYSISKCA 214

Query: 243  DMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFA 302
                    K G  VL+    + +IPI ++  ALG+ +D+ I   I    E      ILF 
Sbjct: 215  -----VTFKKGSIVLTHRSFTEDIPIIVVLKALGLENDQHITQCIGTLPE---FQKILFP 266

Query: 303  SIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMN--------TYLFPSL--- 351
               +A  +        +AL+Y+ +  K T +   E+ +  +N         +L   L   
Sbjct: 267  CFEEA--RLLNVVTQNDALQYIGEKRKETVWEAEETQQRQVNRSKADKAAEFLANVLLCH 324

Query: 352  ---------HGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
                        + KA ++ +MV+ +++A       D RD + NKR E  G L+    + 
Sbjct: 325  IREAQVQKDWNFRHKAFYVCFMVRGMIEASFDTSLLDERDFYGNKRFETTGTLMALLFED 384

Query: 403  HIAHARKRMAKALQRDLYGDRTVRP--IEYYLDA--SILTNGLSRAFSTGAWSHPFKRTE 458
             +    + +  A+ + L    + RP  ++  +++   ++ NG+  A S+G W        
Sbjct: 385  LLKQFNRVVKTAMDQQLSRKDSTRPFNVKQLMESKMEVIQNGMRMAISSGRWDLKRFNMN 444

Query: 459  RISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCG 518
            R  GI   L R + + +L  + R     + T KV   R   PS WG +C   TP+GE+CG
Sbjct: 445  R-QGITQVLSRLSYIASLGMMTRLASSFEKTRKVSGPRSLQPSQWGMVCPCDTPEGESCG 503

Query: 519  LVKNLGVTGLVSTSILEPIFEQLFNS-GMEKLADDASYSLGGKFKVFVDGDWIGVCKDSL 577
            LVKN      V+  + +       ++ G+E++             VF++G  IG+ +   
Sbjct: 504  LVKNFATLSQVTLDLNDNYVRAAAHALGVEEIDTVTPTDFLHYCTVFLNGTLIGIHRYPN 563

Query: 578  SFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKS 631
               + +R  RR   L   V I     Q  V+I  D GRI+R L++V +         +  
Sbjct: 564  RLCAGIRTLRRSGRLHPHVSISTQPRQRTVQIGSDGGRIVRLLIIVRDGKPAVTSAHLDR 623

Query: 632  LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLL 691
            L  +  T    L  G+ E V   E  DC  A           D  P   TH E++   LL
Sbjct: 624  LRDRLCTHNDFLAEGLTEYVDVNESNDCLIAVYPA-------DIGPYT-THLEVEPLSLL 675

Query: 692  GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
            G+  GIIP+ +H+ + R  +QS     QA+G    N  IR DT+     YPQRPL RT  
Sbjct: 676  GVVAGIIPYPHHNQSARNTFQS-AMGKQALGTVALNQYIRADTVLLLGAYPQRPLCRTKA 734

Query: 752  SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
                         +    +L  G NA+V V  + GY+ ED+ V N++SL+RG  R   +R
Sbjct: 735  MS-----------LTHYEKLGAGINAMVCVMSYSGYDIEDAQVYNKSSLDRGYGRCVVLR 783

Query: 812  SYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA 871
              K EVD   ++       D++   +  S  G+  +L+ DG    GA +Q  D+++ K+ 
Sbjct: 784  --KHEVD---LEKYAGGEFDVILPPEKNSGTGKFKALNPDGVAGKGALVQQYDVLVNKFT 838

Query: 872  D-SGAD---HSIKLKHTERGMVQKVVLS-------SNDDGKNFSVVSLRQVRSPCLGDKF 920
              +G D     +  K+ +  +V  V++S       S D  +   VV+ R+VR P  GDKF
Sbjct: 839  PVAGGDPRPAPLVYKYPQPAVVDHVIISPPGDYDRSLDVDQKIKVVT-REVRPPEPGDKF 897

Query: 921  SSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGK 980
            SS HGQKGV+G + +  + PF  +G+ PD+++NPH FPSR T G+LLE    K  AAL  
Sbjct: 898  SSRHGQKGVVGLIVNGVDMPFNERGMCPDMIMNPHGFPSRMTVGKLLELVCSKA-AALRG 956

Query: 981  GICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQR 1040
             +  G     T F   S D+I++QL   G++  G +  Y G TGE+++  +F GP +YQR
Sbjct: 957  SMGDG-----TAFGGESADSISQQLLSFGYNYHGKDVFYSGITGELMQGYVFFGPIYYQR 1011

Query: 1041 LIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTL 1100
            L HM  DK+  R+TGP   LTRQP   R R GG++ GEMERDC++ +GA+  L+ERL   
Sbjct: 1012 LKHMVTDKMHARSTGPRSMLTRQPTEGRSRSGGLRVGEMERDCMVGYGASNLLNERLLIS 1071

Query: 1101 SDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELF 1160
            SD +   IC  C N+          G   R   C  C +     K N+PY  KLL QEL 
Sbjct: 1072 SDMFTADICHVCGNL----------GYNNR---CTYCKTKGTTSKVNMPYAFKLLIQELQ 1118

Query: 1161 SMGITLKF 1168
             MG++L+ 
Sbjct: 1119 GMGVSLRL 1126


>gi|66356606|ref|XP_625481.1| DNA-directed RNA polymerase beta subunit [Cryptosporidium parvum Iowa
            II]
 gi|46226475|gb|EAK87469.1| DNA-directed RNA polymerase beta subunit [Cryptosporidium parvum Iowa
            II]
          Length = 1287

 Score =  447 bits (1150), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 371/1257 (29%), Positives = 555/1257 (44%), Gaps = 208/1257 (16%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
            F    GLV H I+SYN F+   +Q    +    ++    DPS   E    +   R G   
Sbjct: 117  FLKTEGLVKHHIDSYNYFVTTEIQSIVRANANRMIRSDVDPSFFIE----FLDARVGMPK 172

Query: 93   LDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYI 152
            L++            D+ P   R++++TY++ + V V                     Y+
Sbjct: 173  LEENMITV-------DLTPMMCRMRDITYAAPIFVDVD--------------------YV 205

Query: 153  QKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFV 206
            +   +     N+ IGRIPVM++S +C + G      V+  +C  D GGYF++KG EK  +
Sbjct: 206  RGNTVV-RKKNVEIGRIPVMLRSKVCILHGKTAAEMVKLNECPHDPGGYFVVKGTEKAIL 264

Query: 207  AQEQICLKRLWVS-----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYF 261
             QEQ+   R+ V      N      +  +E+K   L+V           K G+  L    
Sbjct: 265  MQEQLSKNRIIVELDNKHNYCATVTSTTAESKSRTLVV----------FKNGKLYLRHNS 314

Query: 262  LSTEIPIWI------------LFFALG---------VSSDKEIVNLIDFTCEDCSILNIL 300
             S EIP+ I            +FF +G         ++S +E+     FT        +L
Sbjct: 315  FSDEIPLCIVLKAMGIETEQEIFFMIGNEPHHQEGIINSLQEVHQEGIFTQRQA----LL 370

Query: 301  FASIHDADNKCDEFRKGRNALKY-VDKLIKGTTFPP---------GESTEECMNTY---- 346
            F S          F   R   K   ++  + + F           G S ++ + T     
Sbjct: 371  FMSKKAKSKFKSTFGSSRGFDKSNAEESAENSGFTEFGGSKSSLCGTSIDDVLETLNRVL 430

Query: 347  ------LFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL---- 396
                  ++  LH    KA FL  M K +L A       D++D + NKR+ELAG+L+    
Sbjct: 431  LSHIGTIYTDLH---PKALFLCLMAKRVLDASEDNSLLDDKDYYGNKRIELAGQLISILF 487

Query: 397  ERELKVHIAHARKRMAKALQRDLY-------------GDRTVRPIEYYLDASILTNGLSR 443
            E   K      +K++ + L R                 + T       L   I+T G+  
Sbjct: 488  EDLFKRFSVLTKKQIDQTLIRYFQTRDASKAGTGRDDSNSTYPDCFRNLPTDIITRGMQT 547

Query: 444  AFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHW 503
            A STG WS    R ER SG+   L R + + +L  + R   Q +   KV   R   PS W
Sbjct: 548  ALSTGNWSIKRFRMER-SGMTQVLTRFSYIASLGIMTRVDSQFEKARKVSGPRALQPSQW 606

Query: 504  GKICFLSTPDGENCGLVKNLGVTGLVSTS-ILEPIFEQLFNSGM---------------- 546
            G +C   TP+GE+CGLVKNL +T  ++T    + +   LF  G+                
Sbjct: 607  GILCPCDTPEGESCGLVKNLALTTHITTDHCPQYLTSLLFTLGVQDISSCSYLDFNTKQS 666

Query: 547  EKLA-DDASYSLGGK------FKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIK 599
            EKL+ +D      GK      + V ++G  +GV +      S+LR  RR+  +   V I 
Sbjct: 667  EKLSNEDLKNESSGKNNVKKHYYVSINGSLLGVHRKPELLASQLRNLRRKGFIGQFVSIF 726

Query: 600  RDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIELVGT 653
             + + S V+I  D GR+ RPL++V+          I+ L+     F   +  GI+E +  
Sbjct: 727  CNHIHSSVQIATDGGRLCRPLIIVDQGVPRLKEEHIEQLKRGEIIFSDFISQGILEWIDV 786

Query: 654  EEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQS 713
             EE +   A   + L  +         TH E+D   +LG+  G+IP+ NH+ + R  YQ 
Sbjct: 787  NEENNLLIALRDENLTNET--------THLEIDPLSILGVVSGLIPYPNHNQSPRNTYQC 838

Query: 714  QKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYN 773
                 Q +G    N  +R D++ + L YPQ+PL +T   +           ++   +L  
Sbjct: 839  -AMGKQVMGSVGFNQFLRCDSVLYLLVYPQKPLCKTRTIE-----------MINFEQLPA 886

Query: 774  GQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEV----DNKEMQVKRRSS 829
            GQN+ VAV    GY+ ED++VMN+AS++RG  R   ++    E+    +    +V R  S
Sbjct: 887  GQNSSVAVMSFAGYDIEDAIVMNKASVDRGFARCFVMKRQTIELQKLPNGLSERVVRPIS 946

Query: 830  DDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD----------SGADHS- 878
                N G  +        LD+DG   +G  +   DI++ K +           S  D S 
Sbjct: 947  VGSGNTGNRRFSFKNDSILDNDGVCNVGVQVSEDDIIVNKMSPINTREYVGDPSQFDLSE 1006

Query: 879  -----IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
                 +K K      + +V+L+ N DG     V  RQ R P LGDKFSS HGQKGV+G +
Sbjct: 1007 YKPSPVKYKGPTSSYIDRVILTENADGNQIYKVITRQTRRPELGDKFSSRHGQKGVVGLI 1066

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
             SQE+ PF+  G  PD+++NPH FPSR T G+LLE    K        +  G  RY T F
Sbjct: 1067 ISQEDLPFSETGWCPDLIMNPHGFPSRMTVGKLLELISSKA------SVLDGNYRYGTAF 1120

Query: 994  ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
                ++   + L   GF   G E L  G TGE + + IF+GP +YQ+L HM  DK+  R 
Sbjct: 1121 GGTPLEESAKCLVEHGFHYSGKEYLTSGTTGEAIEAYIFVGPIYYQKLKHMVLDKMHARG 1180

Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
             GP   LTRQP   R + GG++ GEMERDCL+A+GA+  L ERL   SD ++ ++C +C 
Sbjct: 1181 RGPRQILTRQPTEGRSKDGGLRLGEMERDCLVAYGASNLLIERLMLNSDVFETNVCNQC- 1239

Query: 1114 NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
                        G      YC  C S  D+    +PY  KLL QEL +M +  +  T
Sbjct: 1240 ------------GLFGYNNYCHYCKSSQDVSIIRLPYACKLLFQELQAMNVCPRIRT 1284


>gi|403415400|emb|CCM02100.1| predicted protein [Fibroporia radiculosa]
          Length = 1181

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 360/1213 (29%), Positives = 543/1213 (44%), Gaps = 180/1213 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETI--VEPGYDPSKKGEGEWRYASMRFG 89
            +F    GLV   I+S+N F+   ++    +  +    V+P +         W    +++ 
Sbjct: 40   AFLKVKGLVKQHIDSFNYFVDVDIKNILKANNKVTSDVDPRF---------W----LKYT 86

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
             + +  P     +  D+  + P   RL++ TY + + V +Q   YT+ +    +      
Sbjct: 87   DIVVGFPDRTDADAVDK-SVTPHECRLRDTTYGAPILVTIQ---YTRGKSVVRR------ 136

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG------DCDFDHGGYFIIKGAEK 203
                         N+ IGR+P+M++S+ C + G  +       +C  D GGYFI+KG EK
Sbjct: 137  ------------ANVNIGRLPIMLRSNKCVLTGRNEAQLARMTECPLDPGGYFIVKGTEK 184

Query: 204  VFVAQEQICLKRLWVS--NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYF 261
            V + QEQ+   R+ V    + G   A  + +    L  +      +   K G+  L    
Sbjct: 185  VILVQEQLSKNRIIVEVDPTKGIVQASCTSSTHGGLKSK-----TYVATKKGKIYLRHNS 239

Query: 262  LSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNAL 321
            +  ++PI I   ALG+ SDKEI+ L   T  +       F+   +   K     +   AL
Sbjct: 240  IHEDVPIVIALKALGIQSDKEILLL---TAGNHEAYKSAFSPNLEEAAKLGILTR-HQAL 295

Query: 322  KYVDKLIK------GTTFPPGESTEECMNTYLFP--SLHGT--KQKARFLGYMVKCLLQA 371
            +Y+   +K      G   P  E   E + T +     + G   + KA F+  M + +L A
Sbjct: 296  EYIGSRVKVNRRVVGPRRPAWEEALEALATIVLAHVPVQGLDFRSKAIFVATMTRRVLMA 355

Query: 372  YSGRRKCDNRDDFRNKRLELAGELL-----------ERELKVHIAHARKRMAKALQRDLY 420
                +  D+RD   NKRLELAG+LL              LK  I    K+ ++  + D +
Sbjct: 356  MDDEKMVDDRDYVGNKRLELAGQLLALLFEDLFKTFNTNLKSAIDKVLKKPSRTSEFDAF 415

Query: 421  GDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLR 480
                   +++  D   +T+G  RA STG WS    + +R +G+   L R + +  L  + 
Sbjct: 416  NT-----MQFQGDH--ITSGFVRAISTGNWSLKRFKMDR-AGVTHVLSRLSFISALGMMT 467

Query: 481  RTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-LEPIFE 539
            R   Q + T KV   R   PS WG +C   TP+GE CGLVKNL +   ++T +  EPI  
Sbjct: 468  RISSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVDEEPIIR 527

Query: 540  QLFNSGME------------KLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKR 587
              F  G+E             L   A     G F V V+G  IG+ +    FVS  R+ R
Sbjct: 528  IAFMLGVEGAYFFCICAGHISLVTGAEIYGPGTFVVNVNGTIIGLTRYPARFVSNFRKLR 587

Query: 588  RRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQA 641
            R       V +  +     V I  D GRI RP+++VEN         I  L+     F  
Sbjct: 588  RAGRFSEFVSVYINHHHRTVLIASDGGRICRPMIIVENGRPRVASDHILQLKKGLLMFDD 647

Query: 642  LLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFA 701
             L  G++E +   EE D        Y+     D  P   TH E++   LLG   G+IP+ 
Sbjct: 648  FLRKGLVEYLDVNEEND-------SYIALYEADIVP-STTHLEIEPFTLLGAVAGLIPYP 699

Query: 702  NHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYG 761
            +H+ + R  YQ      QAIG    N   R+DTL +   YPQ+P+ +T   + +G     
Sbjct: 700  HHNQSPRNTYQC-AMGKQAIGAIGYNQLNRIDTLLYLSVYPQQPMVKTKTIELIG----- 753

Query: 762  HNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKE 821
                     L  GQNA VAV  + GY+ ED+L+ N+ASL+RG  R + +R     +    
Sbjct: 754  ------YDRLPAGQNATVAVMSYSGYDIEDALIQNKASLDRGYGRCQVLRKNATLIRKYP 807

Query: 822  MQVKRRSSDDMVN-FGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHS-- 878
                 R +D  V+  G+ Q K    D +  DG   +G  +  GD+ I K   + A+ +  
Sbjct: 808  NGTFDRLADAPVDESGQTQKK---YDIIQLDGLAGVGERVDPGDVYINKQTPTNANDNTF 864

Query: 879  -------------IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHG 925
                         +  K    G + KV++S  ++ +    V +RQ R P LGDKFSS HG
Sbjct: 865  TGQAATVPYKNAPMTYKSPVAGYIDKVMVSDTENDQTLIKVLIRQTRRPELGDKFSSRHG 924

Query: 926  QKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSG 985
            QKGV G + +QE+ PF  QG+VPD ++NPH FPSR T G+++E   GK       G+ +G
Sbjct: 925  QKGVCGLIVNQEDMPFNDQGVVPDTIMNPHGFPSRMTVGKMIELLAGKA------GVLAG 978

Query: 986  LKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRL---- 1041
              +Y T F    V+ ++  L   GFS  G + L  G TGE + + ++ GP +YQ+L    
Sbjct: 979  KLQYGTAFGGSKVEDMSRILIEHGFSYAGKDMLTSGITGEPMEAYVYFGPIYYQKLSAPV 1038

Query: 1042 ---IHMSEDKVKFR-------------NTGPVHPLTRQPVADRKRFGGIKFGEMERDCLI 1085
                H      + R             + GP   LTRQP   R R GG++ GEMERDCLI
Sbjct: 1039 CVVAHGDGQDARAREVSDAVVSSKQKLSAGPRATLTRQPTEGRSREGGLRLGEMERDCLI 1098

Query: 1086 AHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVK 1145
             +GA   L ERL   SD ++++ C +C             G      +C  C S   + +
Sbjct: 1099 GYGATQLLLERLMISSDKFEVNACEEC-------------GLLGYNGWCPFCKSSKRMAQ 1145

Query: 1146 ANVPYGAKLLCQE 1158
              +PY AKLL QE
Sbjct: 1146 LTIPYAAKLLFQE 1158


>gi|328769515|gb|EGF79559.1| RNA polymerase II second largest subunit precursor [Batrachochytrium
            dendrobatidis JAM81]
          Length = 1312

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 268/710 (37%), Positives = 386/710 (54%), Gaps = 79/710 (11%)

Query: 507  CFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFV 565
            C   TP+G+ CGLVKNL + G ++  S   PI E L    ME L + +  ++    K+F+
Sbjct: 631  CPAETPEGQACGLVKNLSLMGYITVGSPAPPILEFLEEWTMESLEEISPSTIPTATKIFL 690

Query: 566  DGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE- 624
            +G W+G+ +D    VS LRR RR  ++  +V + RD    E+R+  DAGRI R L VV  
Sbjct: 691  NGQWVGIHRDPDQLVSTLRRLRRSVDVSPEVSVVRDVRDRELRLCTDAGRIARSLFVVTP 750

Query: 625  ------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEED---CCT----AWGIKYLLKD 671
                      ++ L      ++ LL +G++E + TEEEE    C T    A         
Sbjct: 751  EQSLVLTKEMVQQLHEDQIQWKDLLSYGVVEYIDTEEEETVMICMTPDDLAEARMAAAGQ 810

Query: 672  IEDKKPI-------------KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSS 718
            + ++  +              +THCE+  S +LG+   IIPF +H+ + R +YQS     
Sbjct: 811  VVERHQVGTGRLKSATVYTRNYTHCEIHPSMILGICASIIPFPDHNQSPRNVYQSAM-GK 869

Query: 719  QAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAI 778
            QA+G   TN  +R+DT+S+ LFYPQ+PL  T   +      + H   LP      G NA+
Sbjct: 870  QAMGLFLTNFQLRMDTMSNILFYPQKPLATTRAME------FMHFRDLP-----AGINAV 918

Query: 779  VAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK- 837
            VA+  + GYNQEDSL+MN++S++RG+FRS + R Y     ++E +V   S++ +    + 
Sbjct: 919  VAIACYSGYNQEDSLIMNQSSIDRGLFRSLYYRVYM----DQEKKVGMISTETLEKPSRD 974

Query: 838  --IQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADH---------------SIK 880
              ++ K G  + L+DDG    G  +   DI+IGK     AD                S  
Sbjct: 975  TTLRLKHGTYEKLEDDGLIAPGVRVSGEDIIIGKTVPIAADSTELGQRTTMHTKRDASTP 1034

Query: 881  LKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFP 940
            LK TE G+V +V++++N DG  F  V +R +R P +GDKF+S HGQKG +G     E+ P
Sbjct: 1035 LKSTENGIVDQVLITTNQDGFKFVKVRVRSIRIPHMGDKFASRHGQKGTVGITYRTEDMP 1094

Query: 941  FTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDA 1000
            FT  GI PD++INPHA PSR T G L+E  L K          +G +  ATPF   +V+A
Sbjct: 1095 FTADGITPDLIINPHAIPSRMTIGHLVECLLSK------VSTFTGDEGDATPFTDVTVEA 1148

Query: 1001 ITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPL 1060
            I++ L   G+ + G E LY+G TG  + + ++ GPT+YQRL HM +DK+  R  GP+  L
Sbjct: 1149 ISQALQGYGYQRRGFEVLYNGHTGRKLNAQVYTGPTYYQRLKHMVDDKIHSRARGPLQIL 1208

Query: 1061 TRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKC--KNVANV 1118
            TRQPV  R R GG++FGEMERDC+I+HGAA  L ERLF  SD+Y++H+C  C    VAN+
Sbjct: 1209 TRQPVEGRSRDGGLRFGEMERDCMISHGAANFLKERLFDASDAYRVHVCDHCGLMAVANL 1268

Query: 1119 IQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
                     K     CR C +   I +  +PY  KLL QEL +M I  + 
Sbjct: 1269 ---------KKNSFECRSCRNKTQISQVYLPYACKLLFQELMAMNIAPRL 1309



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 70/145 (48%), Gaps = 1/145 (0%)

Query: 364 MVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDR 423
           M+  LL A   RR+ D+RD F  KRL+LAG LL    ++      K +++ LQ  +   R
Sbjct: 1   MIHRLLLAALDRRETDDRDHFGKKRLDLAGPLLGGLFRMLFRKLTKDVSRYLQITMESGR 60

Query: 424 TVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTR 483
               +   + +S +TNGL  + +TG W    K  +  +G+   L R     TL  LRR  
Sbjct: 61  EFN-LSLAVKSSTITNGLKYSLATGNWGDQKKFMQARAGVSQVLNRYTFASTLSHLRRLN 119

Query: 484 QQVQYTGKVGDARYPHPSHWGKICF 508
             +   GK+   R  H +HWG +C 
Sbjct: 120 TPIGRDGKLAKPRQLHNTHWGMVCL 144


>gi|443917907|gb|ELU38513.1| DNA-directed RNA polymerase III subunit [Rhizoctonia solani AG-1 IA]
          Length = 1248

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 359/1224 (29%), Positives = 545/1224 (44%), Gaps = 212/1224 (17%)

Query: 38   GLVSHQINSYNEFIKNGLQKAFDSFGETI--VEPGYDPSKKGEGEW-RYASMRFGQVTLD 94
            GLV   I+S+N F+   L     +  + +  V+P +         W +Y  +  G  T +
Sbjct: 92   GLVKQHIDSFNYFVDVDLANILKANNKVLSDVDPKF---------WLKYTGIHVGMPTRN 142

Query: 95   KPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQK 154
              SF       +  + P   RL++ TY++ + V VQ   YT+  V   +           
Sbjct: 143  DDSF-------DKSVTPHECRLRDTTYAATITVDVQ---YTRGNVIVRR----------- 181

Query: 155  EVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG------DCDFDHGGYFIIKGAEKVFVAQ 208
                     + IGR+P+M++S+ C + G  +       +C  D GGYFI+KG EKV + Q
Sbjct: 182  -------KGVPIGRLPIMLRSNKCVLAGQSEASLARMTECPLDPGGYFIVKGTEKVILVQ 234

Query: 209  EQICLKRLWVSNS-----MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLS 263
            EQ+   R+ V        +  +V   +  ++++  V +         K     L    ++
Sbjct: 235  EQLSKNRIIVETDPVKGIVQASVTSSTHERKSKTYVLM---------KKNRIYLRHNSIN 285

Query: 264  TEIPIWILFFALGVSSDKEIVNLIDFTCE-----------DCSILNILFASIHDADNKCD 312
             +IP+ I   A+G+ +DKEI+ L   T E           DC++  +             
Sbjct: 286  EDIPVCIALKAMGIQADKEILLLCAGTTEAHKSAFAPNLEDCALAGVFTT---------- 335

Query: 313  EFRKGRNALKYVDKLIK--------GTTFPPGESTEECMNTYLFPSLHGT----KQKARF 360
                 + AL+Y+   +K        G   P  E   E + T +   +       K KA +
Sbjct: 336  -----QQALEYIGSRVKVTRRGFQAGPKRPVWEEAMEALATIVLAHVEVKGMDFKHKAIY 390

Query: 361  LGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARK 409
            +  M + +L A +  +  D+RD   NKRLELAG+LL            + LK  I    K
Sbjct: 391  IATMTRRVLMAMADEKLVDDRDYVGNKRLELAGQLLSLLFEDIFKTFNQNLKSSIDKVLK 450

Query: 410  RMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGR 469
            + ++  + D Y     + + Y  D  ++T+G  RA STG WS    + ER +G+   L R
Sbjct: 451  KPSRTSEFDAY-----QSLLYQSD--LITSGFVRAISTGNWSLKRFKMER-AGVTHVLSR 502

Query: 470  ANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLV 529
               L   +    +   V     V   R   PS WG +C   TP+GE CGLVKNL +   +
Sbjct: 503  YVKLN--LASVYSSSSVPPLDSVSGPRALQPSQWGMLCTSDTPEGEACGLVKNLALMTHI 560

Query: 530  STSILE-PIFEQLFNSGMEKLADDASYSLGGK------FKVFVDGDWIGVCKDSLSFVSE 582
            +T + E PI + ++  G+E    D ++S G +      F V V+G  +G+ +    FV+ 
Sbjct: 561  TTDVEEEPIKKIVYMLGVED-DTDITFSTGAEIYSPHTFVVNVNGSIVGLTRFPARFVAN 619

Query: 583  LRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKN 636
             R+ RR   +   + +  +     V I  D GRI RP+++VEN         I  L+   
Sbjct: 620  FRKLRRSGRISEFISVYINHHHHTVHIASDGGRICRPMIIVENERPRVRTEHINLLKRGV 679

Query: 637  YTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCG 696
             TF   L  G IE +   EE D   A          E       TH E++   +LG   G
Sbjct: 680  VTFDDFLKKGSIEYLDVNEENDSHIAL--------YESSIEPSTTHLEIEPFTILGAVAG 731

Query: 697  IIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLG 756
            +IP+ +H+ + R  YQ      Q+IG    N   R+DTL +   YPQ+P+ +T   + +G
Sbjct: 732  LIPYPHHNQSPRNTYQCAM-GKQSIGAIAYNQLNRIDTLLYLSVYPQQPMVKTKTIELIG 790

Query: 757  KPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAE 816
                          L  GQNA VAV  + GY+ ED+L++N+  L   ++    ++  +  
Sbjct: 791  -----------YDRLPAGQNATVAVMSYSGYDIEDALILNK--LRSRLWTMPGVQEERDT 837

Query: 817  VDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD---- 872
                 +    R +D     G +Q    R D +  DG   +G  +  GD+ + K +     
Sbjct: 838  HPFDRLADAPREAD-----GSVQK---RYDIIQADGIAGVGERVDPGDVYVNKQSPINAN 889

Query: 873  -------SGADHSIKLKHTE-------RGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGD 918
                    GA  SI  ++T         G + KV+L+  D+ +    V LRQ R P LGD
Sbjct: 890  DNTFNTGEGASASISYRNTPMSYKSPMAGYIDKVMLTDTDNDQTLVKVLLRQTRRPELGD 949

Query: 919  KFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAL 978
            KFSS HGQKGV G + +QE+ PF  QGI PD ++NPH FPSR T G+++E   GK    +
Sbjct: 950  KFSSRHGQKGVCGLIVNQEDMPFNDQGINPDTIMNPHGFPSRMTVGKMIELLAGKVSGCM 1009

Query: 979  ------------GKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEM 1026
                          G+ SG  +Y T F    V+ ++  L   GFS  G + L  G TGE 
Sbjct: 1010 RFTISPMPHQNTKAGVLSGSLQYGTAFGGSKVEDMSRILIDYGFSYAGKDMLTSGITGEP 1069

Query: 1027 VRSLIFIGPTFYQR------LIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEME 1080
            +   ++ GP +YQ       + HM  DK+  R  GP   LTRQP   R R GG++ GEME
Sbjct: 1070 MECYVYFGPIYYQLRSNRNFIEHMVMDKMHARAKGPRAVLTRQPTEGRSRDGGLRLGEME 1129

Query: 1081 RDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSG 1140
            RDCLI +GA   L ERL   SD+++++ C  C             G      +C  C S 
Sbjct: 1130 RDCLIGYGATQLLLERLMISSDAFEINACETC-------------GLMGYNGWCPYCKSS 1176

Query: 1141 DDIVKANVPYGAKLLCQELFSMGI 1164
              + K  +PY AKLL QEL  +GI
Sbjct: 1177 KKVAKLTIPYAAKLLFQELTCVGI 1200


>gi|256081821|ref|XP_002577166.1| DNA-directed RNA polymerase III subunit [Schistosoma mansoni]
 gi|360043958|emb|CCD81504.1| putative dna-directed RNA polymerase III subunit [Schistosoma
            mansoni]
          Length = 1128

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 358/1193 (30%), Positives = 543/1193 (45%), Gaps = 153/1193 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            SF    GLV   I+S+N FI+  ++    +     V          E  W    + +  +
Sbjct: 10   SFLASKGLVKLHIDSFNHFIQTEIKNIVRANSRVSVP---------EANW---WLEYNDI 57

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             +  P+   G G     + P   RL+++TY+  + V V F                    
Sbjct: 58   YIKPPTVNDG-GVVASRVTPHDCRLRDLTYAGEILVDVTF-------------------V 97

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
             Q EV+S +   ++IGR+P+M+KS +C + G      +   +C  D GGYFII G EKV 
Sbjct: 98   RQNEVVSKK--GVLIGRMPIMLKSSICVLNGKSPSELMRLKECPLDPGGYFIIGGTEKVV 155

Query: 206  VAQEQICLKRLWVS--NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLS 263
            + QEQ    RL +   +  G   +  S + + +    +V        K  +  LS     
Sbjct: 156  LMQEQTSKNRLIIEEDSKRGLVCSVTSSSAQTKSKTNIVT-------KDDKFYLSHNSFI 208

Query: 264  TEIPIWILFFALGVSSDKEIVNLIDFTCEDC------SILNILFASIHDADNKCDEFRKG 317
             ++PI ILF A+ ++SD+E++ LI  T E        S+   L  +IH   + C+     
Sbjct: 209  VDVPIAILFKAMNITSDQELLQLIG-TEESVWANFVPSLKLCLEYNIHTCLDACNWLHSR 267

Query: 318  RNALKYVDKLIKGTTFPPGESTEEC-------------MNTYLFPSLHGTKQKARFLGYM 364
                +Y      G T     +  E              + T++         +A FLG M
Sbjct: 268  LRQPRYRTAFGAGRTLRTAANILETDIILEIQRFLRDIIITHVEMEKLNFAPRAFFLGQM 327

Query: 365  VKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLY---- 420
            V+ L+ A   R   D+RD + NKR+ELAG LL        A   + + K    DL+    
Sbjct: 328  VRYLILANEKRIPPDDRDFYGNKRIELAGSLL--------ALLFEDVFKTFNEDLWLTVS 379

Query: 421  ---GDRTVRP--IEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQT 475
                 R   P  I  ++   ++T  L+RA S+G W     R  R  G+   + R + +  
Sbjct: 380  KIDTKRRCTPFDISRHIKTWMITEQLNRAISSGNWIIKRFRMMR-HGVTQVVSRLSYVAA 438

Query: 476  LVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE 535
            L  + R   Q + T KV   R  H S WG IC   TP+GE CGLVKN+ +   V+  + +
Sbjct: 439  LGHMTRMTSQFEKTRKVSGPRSIHASQWGLICPSDTPEGEACGLVKNVALMCHVTVEVDD 498

Query: 536  PIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQ 595
                +L ++          Y+   ++ ++V+G  IG  +        +R  RR   +   
Sbjct: 499  AHLIELISNYYTFPLYQMRYA-KNEYVIYVNGKPIGFTQHPGKLCVLIRGLRRSGRIHGF 557

Query: 596  VEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIE 649
            V +   +    V +  D GR  RP +++ N         ++ L      +  LL  G++E
Sbjct: 558  VSVYIKQAYQCVHVVSDGGRFCRPYIILCNGRPLVTESVLQDLRHNVLNWDDLLKKGLVE 617

Query: 650  LVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRV 709
             +   E  DC  A   +  L D        +TH E+D + +LG+  G+IP+ +H+ + R 
Sbjct: 618  YLDVNELNDCLVAMD-ESCLTDGN-----HYTHMEIDPATILGVVAGLIPYPDHNQSPRN 671

Query: 710  LYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRP 769
             YQ      QAIG    N  IR DTL  Q+ YPQ+PL ++               ++   
Sbjct: 672  TYQCAM-GKQAIGTVALNQQIRFDTLQCQMVYPQKPLVQSKTI-----------QMMHFD 719

Query: 770  ELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSS 829
            EL  GQNA+VA+  + GY+ ED+LV+N+AS++RG  R+   R     +   E  V     
Sbjct: 720  ELPAGQNAVVAIMSYSGYDVEDALVINQASIDRGFARACVYRRSGVHLKMHENAVY---- 775

Query: 830  DDMVNFGKIQSKIGRV----DSLDDDGFPFIGANLQSGDIVIGK-----YADSGADHS-- 878
             D +    I+ + G +    + L  DG  +IGA +    I+I K      + +  D++  
Sbjct: 776  -DRLMGPSIERETGVLRRGDEVLQADGVAYIGACVNDRQILINKEMPVVSSSAVLDNAGS 834

Query: 879  -------IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLG 931
                   +  K  E   V+KV+ S+++  +    + LRQ R P +GDKFSS HGQKGV+G
Sbjct: 835  LKFKRCPVDYKGIEPSYVEKVMFSTSEGNQAVVKILLRQTRRPEVGDKFSSRHGQKGVVG 894

Query: 932  FLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYAT 991
             +  QE+ PF+  G+ PDI++NPH FPSR T G+LLE    K  A  GK       R  +
Sbjct: 895  LIVRQEDLPFSTNGLTPDIIMNPHGFPSRMTVGKLLEVLGSKAGAIEGK------IRDGS 948

Query: 992  PFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKF 1051
             F+    + +++ L   G+   G E LY G TG  + + I+ GP +YQRL HM  DKV  
Sbjct: 949  AFSGDPAEVLSQVLIDHGYHYLGKEILYSGVTGAPLEAFIYFGPVYYQRLKHMVMDKVHA 1008

Query: 1052 RNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRK 1111
            R+ GPV  LTRQP   R R GG++ GEMERDC IA+G +  L ERL   SD+Y   +C K
Sbjct: 1009 RSRGPVTALTRQPTEGRSREGGLRVGEMERDCFIAYGTSQLLLERLLLSSDAYDACVCEK 1068

Query: 1112 CKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
            C  +A                +C+ C S   +V   +PY  KLL QEL  M I
Sbjct: 1069 CGLLATSPN------------WCQYCRSSRQVVSVRMPYACKLLFQELMCMRI 1109


>gi|45545355|gb|AAS67525.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Ustilago maydis]
          Length = 887

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 295/916 (32%), Positives = 458/916 (50%), Gaps = 102/916 (11%)

Query: 201  AEKVFVAQEQICLKRLWV-SNSMGWTVAYKSENKR---------NRLIVRLVDMSKFEDI 250
            +EKV +AQE++    ++V S +    V + +E +          + + V+L   +K E  
Sbjct: 1    SEKVLIAQERMAANHVYVFSKAPPAPVTFLAEIRSAVEKGGKTISTMQVKLFSRNK-EKT 59

Query: 251  KGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNK 310
                   ++ ++  +IPI I+F ALG+  D+E++  I +   D  +L +L   I +A   
Sbjct: 60   ANNTIRATLPYIRNDIPIVIVFRALGIVPDREVLQHICYDFNDTPMLEMLKPCIEEAFVI 119

Query: 311  CDEFRKGRNALKYVDKLIKGTTFPPGEST---EECMNTYLFPSLHGTK----QKARFLGY 363
             D       AL ++ +    T     + T   +E +   + P +  ++    +KA F GY
Sbjct: 120  QDR----DVALDFIGRRGTTTGLSRAKRTVYAQEILQKEMLPHISTSEGSNTKKAYFFGY 175

Query: 364  MVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDR 423
            M+  LL A   RR+ D+RD F  KR++L G L+    ++      + + + LQ+ +   R
Sbjct: 176  MIHRLLLAALDRREIDDRDHFGKKRIDLGGPLMANLFRMLFRKVTRDVYRHLQKCVEEHR 235

Query: 424  TVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTR 483
                I+  + +S +TNGL  + +TG W    K  +  +G+   L R     TL  LRRT 
Sbjct: 236  EFH-IQAAVKSSTITNGLRYSLATGNWGDQKKAMQAKAGVSQVLNRFAFASTLSHLRRTN 294

Query: 484  QQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLF 542
              +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   V+      PI E L 
Sbjct: 295  TPIGRDGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMATVTVGTPSAPIVEFLE 354

Query: 543  NSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
              G++ L  D   +     K+FV+G W+G   D    V  LR  RR+ ++  +V + RD 
Sbjct: 355  EFGLDSLV-DMQLAHAKATKIFVNGVWMGTHDDPGQLVDTLRDLRRKDDISHEVSVVRDI 413

Query: 603  LQSEVRIFMDAGRILRPLLV--------------VENMGKIKSLEGKNYTFQALLDHGII 648
             + E+RI+ DA R+LRP+ +              VE +G+     G+ + +  L+  G+I
Sbjct: 414  RERELRIYTDASRVLRPVFIVNPHDMSLLIKKRHVEMIGQPIPETGEEFRWTHLVQEGVI 473

Query: 649  ELVGTEEEEDCCTAWGIKYL-----------------------LKDIEDKKPIKFTHCEL 685
            E +  EEEE          L                       LK +    P  +THCE+
Sbjct: 474  EYLDAEEEESVLICMSTTDLEQSREYKARNGQINLNSADPSARLKSVHTIAPDTWTHCEI 533

Query: 686  DMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRP 745
              + +LG+   I+PF +H+ + R +YQS     QAIG P +N   R D+++H L YPQ+P
Sbjct: 534  HPAMVLGICASIVPFPDHNQSPRNVYQSAM-GKQAIGIPISNIQSRADSMAHVLLYPQKP 592

Query: 746  LFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMF 805
            L  T              H+  R EL  GQNAIVA+  + GYNQEDS++MN++S++RG+F
Sbjct: 593  LGTT----------RSMEHLRFR-ELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLF 641

Query: 806  RSEHIRSYKAE---VDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQS 862
            RS + R Y AE   V   +++   +   D      I+ K G  D +D DG    G  +  
Sbjct: 642  RSMYYRGYMAEEKKVGVMQLEEFEKPHRDTT----IRMKHGTYDKIDADGLCAPGTRVSG 697

Query: 863  GDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVS 907
             D++IGK A                +  D S+ LK TE G++ +V++++N  G  F  V 
Sbjct: 698  DDVIIGKTAPLPPDSEELGMRSKLHTKKDASVSLKSTENGIIDQVLVTTNSHGNKFVKVR 757

Query: 908  LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLL 967
            +R  R P  GDKF+S HGQKG +G    QE+ PF+ +G+ PDI+INPHA PSR T G L+
Sbjct: 758  VRSTRVPQTGDKFASRHGQKGTIGITYRQEDMPFSAEGVTPDIIINPHAIPSRMTIGHLV 817

Query: 968  EAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMV 1027
            E  L K +AAL     SG +  ATPF   +V+A++  L   G+   G E +Y G TG  +
Sbjct: 818  ECLLSK-VAAL-----SGQEGDATPFTELTVEAVSSILRGLGYQSRGLEVMYHGHTGRKL 871

Query: 1028 RSLIFIGPTFYQRLIH 1043
            ++ +++GPT+YQRL H
Sbjct: 872  QAQVYLGPTYYQRLKH 887


>gi|68131890|gb|AAY85223.1| RNA polymerase II second largest subunit [Nelumbo nucifera]
          Length = 865

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 302/903 (33%), Positives = 469/903 (51%), Gaps = 98/903 (10%)

Query: 114 ARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMV 173
           ARL+N+TYS+ + V V       KRV     K G +   ++   + E   + IG++P+M+
Sbjct: 2   ARLRNLTYSAPLYVDVT------KRV----IKKGHD--CEEVTETQEFAKVFIGKVPIML 49

Query: 174 KSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSM 222
           +S  C +         E G+C +D GGYFII G+EKV +AQE++    ++V      N  
Sbjct: 50  RSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKY 109

Query: 223 GWTVAYKS-ENKRNR----LIVRLVDMSKFEDIKGGEKV-LSVYFLSTEIPIWILFFALG 276
            +    +S    +NR    + VR++  +  +    G+ +  ++ ++ TEIPI I+F ALG
Sbjct: 110 AYVAEVRSMAESQNRPPSSMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALG 169

Query: 277 VSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPG 336
             +DK+I+  I +   D  ++ +L  S+ +A       +  + AL Y+ K  +G+T   G
Sbjct: 170 FVADKDILEHICYDFSDTQMMELLRPSLEEAF----VIQNQQVALDYIGK--RGSTV--G 221

Query: 337 ESTE-------ECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFR 385
            + E       E +   + P +    +   +KA + GY++  LL    GRR  D+RD + 
Sbjct: 222 VTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYG 281

Query: 386 NKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAF 445
           NKRL+LAG LL    ++      + +   +Q+ +   + V  +++ + A  +T+GL  + 
Sbjct: 282 NKRLDLAGPLLGGLFRMLFRKLTRDVRAYVQKCVDNGKDVN-LQFAIKAKTITSGLKYSL 340

Query: 446 STGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGK 505
           +TG W        R +G+   L R     TL  LRR    +   GK+   R  H SHWG 
Sbjct: 341 ATGNWGQANAAGTR-AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSHWGM 399

Query: 506 ICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVF 564
           +C   TP+G+ CGLVKNL +   ++  S   PI E L     E   + +   +    K+F
Sbjct: 400 MCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQATKIF 459

Query: 565 VDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVE 624
           V+G W+G+ ++    V  LR+ RR+ ++ T+V + RD    E+R++ D GR  RPL +VE
Sbjct: 460 VNGCWVGIHRNPELLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPLFIVE 519

Query: 625 NM------GKIKSLEGKNYT----FQALLDHGIIELVGTEEEEDCCTAWGIKYLLK---D 671
                     I++L+ +  +    +  L+  G IE V TEEEE    +  I  L+    +
Sbjct: 520 KQRLLIKKKDIRALQQRESSEEGGWHDLVAKGFIEYVDTEEEETTMISMTINDLVTARLN 579

Query: 672 IEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIR 731
            E+     +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R
Sbjct: 580 PEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGIYVTNYQLR 638

Query: 732 VDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQED 791
           +DTL++ L+YPQ+PL  T   + L      H   LP      G NAIVA+  + GYNQED
Sbjct: 639 MDTLAYVLYYPQKPLVTTRAMEHL------HFRQLP-----AGINAIVAIACYSGYNQED 687

Query: 792 SLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVK----RRSSDDMVNFGKIQSKIGRVDS 847
           S++MN++S++RG FRS   RSY+ E       VK    R S ++ +       + G  D 
Sbjct: 688 SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPSRENTMGM-----RHGSYDK 742

Query: 848 LDDDGFPFIGANLQSGDIVIGKYA-----DSGA--------DHSIKLKHTERGMVQKVVL 894
           LDDDG    G  +   D++IGK       DS          DHS  L+H+E GMV +V+L
Sbjct: 743 LDDDGLAPPGTRVSGEDVIIGKTTPIAQDDSQGQSSRYTRRDHSTSLRHSESGMVDQVLL 802

Query: 895 SSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINP 954
           ++N DG  F  V +R VR P +GDKFSS HGQKG +G   +QE+ P+T++GI PDI++NP
Sbjct: 803 TTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNP 862

Query: 955 HAF 957
           HA 
Sbjct: 863 HAI 865


>gi|154336907|ref|XP_001564689.1| DNA-directed RNA polymerase polypeptide [Leishmania braziliensis
            MHOM/BR/75/M2904]
 gi|134061724|emb|CAM38755.1| DNA-directed RNA polymerase polypeptide [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 1125

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 353/1179 (29%), Positives = 552/1179 (46%), Gaps = 131/1179 (11%)

Query: 38   GLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPS 97
            G+++H I S++  I+  LQ+   +     ++   DP            +R+  + + +P 
Sbjct: 24   GILNHHIASFDHLIEVELQRILLNESNVEIKSVVDPD---------FLIRYQNIRVCRPQ 74

Query: 98   FFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVL 157
               G G     + P+  R+++MTY   M V VQ+        + D+    R   ++K+V 
Sbjct: 75   EIVGKGHIPKFVTPQECRIRDMTYRGDMIVDVQY-------TSRDR---SRAMLVEKDVK 124

Query: 158  SDETTNIIIGRIPVMVKSDLCWM------KGVEKGDCDFDHGGYFIIKGAEKVFVAQEQI 211
                    IG IP+M+KS  C +      + V   +C  D GGYFIIKG EKV + QEQ 
Sbjct: 125  --------IGTIPIMLKSKCCNLYRKTREELVSMRECPLDPGGYFIIKGVEKVCLVQEQQ 176

Query: 212  CLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWIL 271
               R+ +       ++   ++K +  I +          K G  VL+    + +IPI ++
Sbjct: 177  SKNRVIIEADEHGNISAHVQSKTHYSISKCA-----VTFKKGSIVLTHRSFTEDIPIIVV 231

Query: 272  FFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGT 331
              ALG+ +D+ I   I  +    +   ILF    +A    + F +  +AL+Y+ +  K T
Sbjct: 232  LKALGLENDQHITQCIGTS---PAFQKILFPCFEEARG-LNIFTQN-DALQYIGEKRKET 286

Query: 332  TFPPGESTEECMN------------TYLFPSLHGT--------KQKARFLGYMVKCLLQA 371
             +   E+ +  +N              L   +  +        + KA ++ +MV+ +++A
Sbjct: 287  VWEVEETQQRQVNRSKADKAAEFLANVLLCHIRESQMQKDWNFRHKAFYVCFMVRGMIEA 346

Query: 372  YSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRP--IE 429
                   D RD + NKR E  G L+    +  +    + +  A+ + L    + RP  ++
Sbjct: 347  SFDASLLDERDFYGNKRFETTGTLMALLFEDLLKQFNRVVKTAMDQQLSKRDSTRPFNVK 406

Query: 430  YYLDA--SILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQ 487
              +++   ++ NG+  A S+G W        R  GI   L R + +  L  + R     +
Sbjct: 407  QLMESKMEVIQNGMRMAISSGRWDLKRFNMNR-QGITQVLSRLSYIACLGMMTRLASSFE 465

Query: 488  YTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFNS-GM 546
             T KV   R   PS WG +C   TP+GE+CGLVKN      V+  + +       +S G+
Sbjct: 466  KTRKVSGPRSLQPSQWGMVCPCDTPEGESCGLVKNFATLSQVTLDMNDHYVRASAHSLGV 525

Query: 547  EKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSE 606
            E++           + VF++G  IG+ +      + +R  RR   L   V I     Q  
Sbjct: 526  EEIDTVTPTDFLQYYSVFLNGTLIGIHRYPNRLCAGIRALRRSGRLHPHVSISMQPRQRT 585

Query: 607  VRIFMDAGRILRPLLVVE------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCC 660
            V+I  D GRI+R L++V           +  L  +  T    L  G+IE V   E  DC 
Sbjct: 586  VQIGSDGGRIVRLLIIVRGGKPAVTSAHLDRLRDRLCTHNDFLAEGLIEYVDVNESNDCL 645

Query: 661  TAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQA 720
             A           D  P   TH E++   LLG+  GIIP+ +H+ + R  +QS     QA
Sbjct: 646  IAVYPA-------DIGPYT-THLEVEPLSLLGVVAGIIPYPHHNQSARNTFQS-AMGKQA 696

Query: 721  IGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVA 780
            +G    N  IR DT+     YPQRPL RT               +    +L  G NA+V 
Sbjct: 697  LGTVALNQYIRADTVLLLGAYPQRPLCRTRAMS-----------LTHYEKLGAGINAMVC 745

Query: 781  VNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQS 840
            V  + GY+ ED+ V N++SL+RG  R   +R  K EVD   ++       D++   +  S
Sbjct: 746  VMSYSGYDIEDAQVYNKSSLDRGYGRCVVLR--KHEVD---LEKYAGGEFDVILPPEKNS 800

Query: 841  KIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD-SGAD---HSIKLKHTERGMVQKVVLS- 895
              G+  +L+ DG    GA +Q  D+++ K+   +G D     +  K+ +  +V  V++S 
Sbjct: 801  GSGKFKALNPDGVASKGAFVQQYDVLVNKFTPVAGGDPRPAPLVYKYPQLAVVDHVIISP 860

Query: 896  ------SNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPD 949
                  S D  +   V++ R+VR P  GDKFSS HGQKGV+G + +  + PF  +G+ PD
Sbjct: 861  PGDYDRSLDVDQKIKVIT-REVRPPEPGDKFSSRHGQKGVVGLIVNGVDMPFNERGMCPD 919

Query: 950  IVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAG 1009
            +++NPH FPSR T G+LLE    K  AAL   +  G     T F   S D+I+ QL   G
Sbjct: 920  MIMNPHGFPSRMTVGKLLELVCSKA-AALRGSMGDG-----TAFGGDSADSISRQLLSFG 973

Query: 1010 FSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRK 1069
            ++  G +  Y G TGE+++  +F GP +YQRL HM  DK+  R+TGP   LTRQP   R 
Sbjct: 974  YNYHGKDVFYSGITGELMQGYVFFGPIYYQRLKHMVTDKMHARSTGPRSMLTRQPTEGRS 1033

Query: 1070 RFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKV 1129
            R GG++ GEMERDC++ +GA++ L+ERL   SD +   IC  C N+          G   
Sbjct: 1034 RSGGLRVGEMERDCMVGYGASSLLNERLLISSDLFTADICHVCGNL----------GYNN 1083

Query: 1130 RGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
            R   C  C +     K N+PY  KLL QEL  MG++L+ 
Sbjct: 1084 R---CTYCKTKGTTSKVNMPYAFKLLIQELQGMGVSLRL 1119


>gi|256081823|ref|XP_002577167.1| DNA-directed RNA polymerase III subunit [Schistosoma mansoni]
 gi|360043957|emb|CCD81503.1| putative dna-directed RNA polymerase III subunit [Schistosoma
            mansoni]
          Length = 1126

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 355/1191 (29%), Positives = 539/1191 (45%), Gaps = 151/1191 (12%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
            SF    GLV   I+S+N FI+  ++    +     V          E  W    + +  +
Sbjct: 10   SFLASKGLVKLHIDSFNHFIQTEIKNIVRANSRVSVP---------EANWW---LEYNDI 57

Query: 92   TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
             +  P+   G G     + P   RL+++TY+  + V V F                    
Sbjct: 58   YIKPPTVNDG-GVVASRVTPHDCRLRDLTYAGEILVDVTF-------------------V 97

Query: 152  IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
             Q EV+S +   ++IGR+P+M+KS +C + G      +   +C  D GGYFII G EKV 
Sbjct: 98   RQNEVVSKK--GVLIGRMPIMLKSSICVLNGKSPSELMRLKECPLDPGGYFIIGGTEKVV 155

Query: 206  VAQEQICLKRLWVS--NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLS 263
            + QEQ    RL +   +  G   +  S + + +    +V        K  +  LS     
Sbjct: 156  LMQEQTSKNRLIIEEDSKRGLVCSVTSSSAQTKSKTNIVT-------KDDKFYLSHNSFI 208

Query: 264  TEIPIWILFFALGVSSDKEIVNLIDFTCEDC------SILNILFASIHDADNKCDEFRKG 317
             ++PI ILF A+ ++SD+E++ LI  T E        S+   L  +IH   + C+     
Sbjct: 209  VDVPIAILFKAMNITSDQELLQLIG-TEESVWANFVPSLKLCLEYNIHTCLDACNWLHSR 267

Query: 318  RNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRK 377
                +Y                 + + T++         +A FLG MV+ L+ A   R  
Sbjct: 268  LRQPRYRTAFGADIILEIQRFLRDIIITHVEMEKLNFAPRAFFLGQMVRYLILANEKRIP 327

Query: 378  CDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLY-------GDRTVRP--I 428
             ++RD + NKR+ELAG LL        A   + + K    DL+         R   P  I
Sbjct: 328  VNDRDFYGNKRIELAGSLL--------ALLFEDVFKTFNEDLWLTVSKIDTKRRCTPFDI 379

Query: 429  EYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQY 488
              ++   ++T  L+RA S+G W     R  R  G+   + R + +  L  + R   Q + 
Sbjct: 380  SRHIKTWMITEQLNRAISSGNWIIKRFRMMR-HGVTQVVSRLSYVAALGHMTRMTSQFEK 438

Query: 489  TGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFNSGMEK 548
            T KV   R  H S WG IC   TP+GE CGLVKN+ +   V+  + +    +L ++    
Sbjct: 439  TRKVSGPRSIHASQWGLICPSDTPEGEACGLVKNVALMCHVTVEVDDAHLIELISNYYTF 498

Query: 549  LADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVR 608
                  Y+   ++ ++V+G  IG  +        +R  RR   +   V +   +    V 
Sbjct: 499  PLYQMRYA-KNEYVIYVNGKPIGFTQHPGKLCVLIRGLRRSGRIHGFVSVYIKQAYQCVH 557

Query: 609  IFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTA 662
            +  D GR  RP +++ N         ++ L      +  LL  G++E +   E  DC  A
Sbjct: 558  VVSDGGRFCRPYIILCNGRPLVTESVLQDLRHNVLNWDDLLKKGLVEYLDVNELNDCLVA 617

Query: 663  WGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIG 722
               +  L D        +TH E+D + +LG+  G+IP+ +H+ + R  YQ      QAIG
Sbjct: 618  MD-ESCLTDGN-----HYTHMEIDPATILGVVAGLIPYPDHNQSPRNTYQCAM-GKQAIG 670

Query: 723  FPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVN 782
                N  IR DTL  Q+ YPQ+PL ++               ++   EL  GQNA+VA+ 
Sbjct: 671  TVALNQQIRFDTLQCQMVYPQKPLVQSKTI-----------QMMHFDELPAGQNAVVAIM 719

Query: 783  VHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKI 842
             + GY+ ED+LV+N+AS++RG  R+   R     +   E  V      D +    I+ + 
Sbjct: 720  SYSGYDVEDALVINQASIDRGFARACVYRRSGVHLKMHENAVY-----DRLMGPSIERET 774

Query: 843  GRV----DSLDDDGFPFIGANLQSGDIVIGK---------YADSGADHSIKL-------- 881
            G +    + L  DG  +IGA +    I+I K           D+    S+ +        
Sbjct: 775  GVLRRGDEVLQADGVAYIGACVNDRQILINKEMPVVSSSAVLDNAGSLSLNVNTPENATE 834

Query: 882  --------KHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
                    K  E   V+KV+ S+++  +    + LRQ R P +GDKFSS HGQKGV+G +
Sbjct: 835  FKRCPVDYKGIEPSYVEKVMFSTSEGNQAVVKILLRQTRRPEVGDKFSSRHGQKGVVGLI 894

Query: 934  ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
              QE+ PF+  G+ PDI++NPH FPSR T G+LLE    K  A  GK       R  + F
Sbjct: 895  VRQEDLPFSTNGLTPDIIMNPHGFPSRMTVGKLLEVLGSKAGAIEGK------IRDGSAF 948

Query: 994  ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
            +    + +++ L   G+   G E LY G TG  + + I+ GP +YQRL HM  DKV  R+
Sbjct: 949  SGDPAEVLSQVLIDHGYHYLGKEILYSGVTGAPLEAFIYFGPVYYQRLKHMVMDKVHARS 1008

Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
             GPV  LTRQP   R R GG++ GEMERDC IA+G +  L ERL   SD+Y   +C KC 
Sbjct: 1009 RGPVTALTRQPTEGRSREGGLRVGEMERDCFIAYGTSQLLLERLLLSSDAYDACVCEKCG 1068

Query: 1114 NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
             +A                +C+ C S   +V   +PY  KLL QEL  M I
Sbjct: 1069 LLAT------------SPNWCQYCRSSRQVVSVRMPYACKLLFQELMCMRI 1107


>gi|374724390|gb|EHR76470.1| DNA-directed RNA polymerase subunit B [uncultured marine group II
            euryarchaeote]
          Length = 1202

 Score =  444 bits (1143), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 361/1273 (28%), Positives = 569/1273 (44%), Gaps = 213/1273 (16%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETI--VEPGYDPSKKGEGEW-------- 81
            SFF E  LV+HQ+ SY++ I +G   +     + I  +  G D     +           
Sbjct: 7    SFFKERSLVNHQLASYDDCIPSG-DNSLSRMEKIIRNIRVGTDEEIDDDDGGFIKLDVVD 65

Query: 82   RYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTS 141
            +  ++R   + L +P+    NG  EH   P   RL+ +TY S   V + FQ++       
Sbjct: 66   QDITIRLKNIQLGEPTIREANGA-EHPSTPMECRLRKLTYMS--PVTIDFQIF------R 116

Query: 142  DKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------------------- 182
            +  ++ +E+ +Q            +G +P+MV+S  C +                     
Sbjct: 117  NGIRSPKEEGVQ------------VGSMPIMVRSKRCNLHAGHIAGDRQLYPTTSTEDSA 164

Query: 183  ------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNR 236
                   +KG+   D GGYFII G E+V ++ E +   R+ V  +      Y    +  +
Sbjct: 165  LWDNLLRKKGEDPLDPGGYFIINGTERVLISMEDLAPNRVTVEINK----RYAKRTEVAK 220

Query: 237  LIVRLVDMSK---FEDIKGGEKVLSVYFL-STEIPIWILFFALGVSSDKEIVNLIDFTCE 292
            +  +   M K    E  + G  ++ +    +T IP+ +L  ALG+ +D+E+   I     
Sbjct: 221  IFSQKDGMRKPLNVEKRRDGMLMVKISTAGTTAIPVVLLMRALGIENDQEVFQAI---AG 277

Query: 293  DCSILNILFASIHDA-DNKCDEFRKGRNALKYVDKLIKGTTFPPGESTE-------ECMN 344
                   + A++++  DN+    +    A +++ K      F  G+  E       + ++
Sbjct: 278  PTDTFKYIVANLNEVNDNEEYSVQSMTEAHEWLQK-----KFAAGQQREYREQRVNQLLD 332

Query: 345  TYLFPSLH----GTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLEREL 400
              L P L       K+KA FLG +V+ +L+     R+ +++D + NKR+ LAG+L+E   
Sbjct: 333  RELLPHLGDQPGARKKKAIFLGRIVRQVLEMALTNREPNDKDHYANKRVRLAGDLVEDLF 392

Query: 401  KVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERI 460
            +V      + +   L+R     R ++ I   L   +LT+ +  A +TG W          
Sbjct: 393  RVSSGQLARDLKYQLERHHNRKRELK-ITSCLRPDVLTSKIMHALATGNW------VGGR 445

Query: 461  SGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLV 520
            SG+   L R   L +L  +RR    +  +    +AR  HP+ WG++C   TP+G+NCGLV
Sbjct: 446  SGVSQLLDRTTYLASLSHMRRVTSPLVRSQPHFEARDLHPTQWGRLCPNETPEGQNCGLV 505

Query: 521  KNLGVTGLVSTSILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFV 580
            KN      +S  I E    Q  +       DD  ++ G +  V V+GD  G+ K+  + V
Sbjct: 506  KNAAQMIDISEHISEIEVRQQLDELDVFEPDD--WTSGDR--VHVNGDIYGIHKNGKNLV 561

Query: 581  SELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMG------KIKSLEG 634
               +  RRR  +P +V I+ D    ++ I  D GRILRPLL++ +         +++L  
Sbjct: 562  RHFKSARRRGTIPAEVSIRYDRENKDIFINTDKGRILRPLLILYDGAPRLTNENLQALRA 621

Query: 635  KNYTFQALLDHGIIELVGTEEEEDCCTA-------------------------------- 662
               TF+ L++ GI+E V  EEEED                                    
Sbjct: 622  GEMTFKQLVNEGIVEWVDAEEEEDLLITPRPFVLPETVQSGPLAGRPLTNENVEWTNLGE 681

Query: 663  ------------------WGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHD 704
                              W I  +  D+   +  + THCE+D   +LG+   +IP+  H+
Sbjct: 682  PGATQANLKARVRMPNGEWEIANIKVDLLYTE--EHTHCEIDPQLVLGVCAALIPYPEHN 739

Query: 705  HARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNH 764
               RV   +     Q++G P+ N  +R DT +H L YP R + RT   +          H
Sbjct: 740  STPRVTGGTAM-VKQSLGLPSANYRMRPDTRAHILHYPHRSITRTNAMET--------TH 790

Query: 765  ILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQV 824
               RP    GQN IVA+    GYN +D+++MNR S+  G+ RS   R+Y AE        
Sbjct: 791  FDERP---GGQNFIVAIMSLHGYNMQDAVIMNRGSVNLGLGRSTFNRTYNAE-------- 839

Query: 825  KRRSSDDMVN-FGKIQSKIGRVDSL---------DDDGFPFIGANLQSGDIVIGK----- 869
            +RR     V    K  S +  V  L         + DG P     L  G++++GK     
Sbjct: 840  RRRFPGGQVEEIEKPGSSLQEVKGLKPEEAYRHLEADGLPLPEKELVGGEVLVGKTSPPR 899

Query: 870  -----------YADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGD 918
                        A    + S+ ++H ERG V  V ++ + D      V +R  + P +GD
Sbjct: 900  FLEESAGGAFLLAQERRESSMLVRHGERGWVDNVYVTESLDSGRLVRVMVRSHKIPEVGD 959

Query: 919  KFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAL 978
            KF+S HGQKGV+G L   E+ PFT  GIVPD++INPHA PSR T   +LE   GK     
Sbjct: 960  KFASRHGQKGVIGRLVDPEDMPFTADGIVPDLIINPHAIPSRMTVAHVLEMIGGK----- 1014

Query: 979  GKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFY 1038
              G   G +   T F      ++ + L R G +  G E + +G TGE+  + IF+G  +Y
Sbjct: 1015 -VGSLEGRRIDGTAFRGEKEGSLRDGLVRNGLAHSGRETMINGETGEVYPADIFVGCIYY 1073

Query: 1039 QRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLF 1098
            QRL H+   K+  R+ G V  LTRQP   R R GG++FGEMERDCLIAHGA+  + +RL 
Sbjct: 1074 QRLHHLVSSKIHARSRGRVQVLTRQPTEGRARQGGLRFGEMERDCLIAHGASMVIKDRLL 1133

Query: 1099 TLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQE 1158
              SD   M++C +  ++A           K R     I   G ++ K    Y  KLL  E
Sbjct: 1134 DESDGIDMYVCAQSGHIAWY-------DPKRRTYVSPIHGDGAEVYKVQTSYAFKLLLDE 1186

Query: 1159 LFSMGITLKFDTE 1171
            + S+G+ ++ + E
Sbjct: 1187 MKSLGVAMRLELE 1199


>gi|45120568|gb|AAO64656.2| RNA polymerase II subunit RPB2, partial [Echinodontium tinctorium]
          Length = 871

 Score =  444 bits (1143), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 297/866 (34%), Positives = 447/866 (51%), Gaps = 112/866 (12%)

Query: 258  SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG 317
            ++ ++  +IPIW++F ALGV SD++I+  I +   D  +L +L   I D     D     
Sbjct: 42   TIPYIKVDIPIWVVFRALGVISDRDILEHICYDMSDSPMLEMLKPCIDDGFVIQDR---- 97

Query: 318  RNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLHGTK----QKARFLGYMVK 366
              AL ++    +GTT   G S E       E +   + P +  ++    +KA F GYM+ 
Sbjct: 98   DIALDFIGN--RGTT--TGLSRERRIRYAQEILQKEMLPHVSMSEGSESRKAYFFGYMIH 153

Query: 367  CLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR 426
             LL A   RR+ D+RD F  KRL+LAG LL    ++      + + + LQ+ +   +   
Sbjct: 154  RLLLAAMERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTRDVYRHLQKCVETHK--- 210

Query: 427  PIEYYLDASI----LTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
              E+ L+ +I    +TNGL  + +TG W    K     +G+   L R     TL  LRR 
Sbjct: 211  --EFNLNLAIKHTTITNGLKYSLATGNWGDQKKAMSAKAGVSQVLNRYTYASTLSHLRRC 268

Query: 483  RQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQL 541
               +   GK+   R  H +HWG +C   TP+G+ CGLVKNL +   +S  S    I + L
Sbjct: 269  NTPLGREGKIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMACISVGSTSGTIVDFL 328

Query: 542  FNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
               G+E L ++A +S     KVFV+G W+G+ +D  + +S L++ RR+ ++  +V I RD
Sbjct: 329  EEWGLESLEENA-HSSTLTTKVFVNGVWVGIHRDPTNLISTLKKLRRKDDVHPEVSIVRD 387

Query: 602  ELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDH-------------GII 648
              + E+RI+ D G + RPL VVEN   +   +   +  Q   DH             G+I
Sbjct: 388  IRERELRIYTDPGXVCRPLFVVENHQLVLEKKHVQWVSQGYRDHPXDPFHWSQLIKTGVI 447

Query: 649  ELVGTEEEED---CCT----------AWGI------------KYLLKDIEDKKPIKFTHC 683
            E++  EEEE    C T          A GI               LK      P  +THC
Sbjct: 448  EMLDAEEEETVMICMTPEDLENSRLQAAGIDPHANEDQEFDPAARLKAASGLTPHTWTHC 507

Query: 684  ELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQ 743
            E+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN  +R+DT+++ L+YPQ
Sbjct: 508  EIHPSMILGICASIIPFPDHNQSPRNTYQSAM-GKQAMGIYLTNFLVRMDTMANILYYPQ 566

Query: 744  RPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERG 803
            +PL  T   +            L   EL  GQNAIVA+  + GYNQEDS++MN++S++RG
Sbjct: 567  KPLATTRSME-----------YLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRG 615

Query: 804  MFRSEHIRSY-----KAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGA 858
            +FRS + RSY     KA V   E + ++ + D  ++      K G  D +++DG    G 
Sbjct: 616  LFRSIYYRSYMDMEKKAGVQQVE-EFEKPTRDTTLHM-----KHGTYDKIENDGLIAPGT 669

Query: 859  NLQSGDIVIGKYADSGADH---------------SIKLKHTERGMVQKVVLSSNDDGKNF 903
             +   DI+IGK A    D                S  LK TE G+V +V++++N +G  F
Sbjct: 670  GVNGADIIIGKTAPLPVDSEELGQRSRLHTRRDVSTPLKSTESGIVDQVLVTTNHEGHKF 729

Query: 904  SVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTP 963
              + +R  R P +GDKF+S HGQKG +G    QE+ PFT +GI PDI+INPHA PSR T 
Sbjct: 730  VKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTI 789

Query: 964  GQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRT 1023
            G L+E  L K    +G       +  ATPF   +V+++++ L + G+   G E +Y G T
Sbjct: 790  GHLVECLLSKVATLIGN------EGDATPFTDLTVESVSKFLLQQGYQSRGLEVMYHGHT 843

Query: 1024 GEMVRSLIFIGPTFYQRLIHMSEDKV 1049
            G  +++ +++GPT+YQRL HM +DK+
Sbjct: 844  GRKLQAQVYLGPTYYQRLKHMVDDKI 869


>gi|68131878|gb|AAY85217.1| RNA polymerase II second largest subunit [Muehlenbeckia platyclada]
          Length = 875

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 306/912 (33%), Positives = 464/912 (50%), Gaps = 104/912 (11%)

Query: 109 MFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGR 168
           +FP+ ARL+N+TYS+ + V V       KRV     K G +   ++   + + T + IG+
Sbjct: 5   LFPKAARLRNLTYSAPLYVDVT------KRV----IKKGHDG--EEVTETQDFTKVFIGK 52

Query: 169 IPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV---- 218
           +P+M++S  C +         E G+C  D GGYFII G+EKV +AQE++    ++V    
Sbjct: 53  VPIMLRSSYCTLYHNSEKDLTELGECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 112

Query: 219 -SNSMGWTVAYKS--ENKRNRLIVRLVDMSKFEDIKGGEK----VLSVYFLSTEIPIWIL 271
             N   +    +S  EN+        V M      KGG        ++ ++ TEIPI I+
Sbjct: 113 QPNKYAYVAEVRSMAENQNRPPSTMFVRMLSRAGAKGGSSGQYIRATLPYIRTEIPIIIV 172

Query: 272 FFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGT 331
           F ALG  +DK+I+  I +   D  ++ +L  S+ +A       +  + AL Y+ K  +G 
Sbjct: 173 FRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAF----VIQNQQVALDYIGK--RGA 226

Query: 332 TFPPGESTE-------ECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRRKCDN 380
           T   G + E       E +   + P +    +   +KA + GY+V  LL    GRR  D+
Sbjct: 227 TV--GVTKEKRIKYAREILQKEMLPHVGVGEYCETKKAYYFGYIVHRLLLCALGRRPEDD 284

Query: 381 RDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNG 440
           RD + NKRL+LAG LL    ++      + +   +Q+ +   + V  +++ + A  +T+G
Sbjct: 285 RDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDQGKDVN-LQFAIKAKTITSG 343

Query: 441 LSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHP 500
           L  + +TG W        R +G+   L R     TL  LRR        GK+   R  H 
Sbjct: 344 LKYSLATGNWGQANAAGTR-AGVSQVLNRLTYASTLSHLRRLNSPTGREGKLAKPRQLHN 402

Query: 501 SHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYS-LG 558
           S WG +C   TP+G+ CGLVKNL +   ++  S   PI E L     E   ++ S + + 
Sbjct: 403 SQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWSTENFEEEISPAVIP 462

Query: 559 GKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILR 618
              K+FV+G W+G+ +D    V  LR+ RRR ++ T+V + RD    E+RI+ D GR  R
Sbjct: 463 QAAKIFVNGCWVGIHRDPDLLVKTLRQLRRRVDVNTEVGVVRDIHLKELRIYTDYGRCSR 522

Query: 619 PLLVVENMG------KIKSLEGKNYT----FQALLDHGIIELVGTEEEEDCCTAWGIKYL 668
           PL +V+          I++L+ +       +  L+  G IE + TEEEE    +  I  L
Sbjct: 523 PLFIVDKQRLLIKKRDIRALQLRETPEDGGWHDLVAKGFIEYIDTEEEETTMISMTINDL 582

Query: 669 LK---DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPT 725
           +    + E+     +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   
Sbjct: 583 ITARVNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGIYV 641

Query: 726 TNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHL 785
           TN   R+DTL++ L+YPQ+PL  T   + L      H   LP      G NAIVA+  + 
Sbjct: 642 TNYQFRMDTLAYVLYYPQKPLVTTRAMEHL------HFRQLP-----AGINAIVAIACYS 690

Query: 786 GYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK------IQ 839
           GYNQEDS++MN++S++RG FRS   RSY+ E       VK        +FG+      + 
Sbjct: 691 GYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKE-------DFGRPDRSNTMG 743

Query: 840 SKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGAD--------------HSIKLKHTE 885
            + G  D LDDDG    G  +   D++IGK      D              HSI L+H+E
Sbjct: 744 MRHGSYDKLDDDGLAPPGTKVSGEDVIIGKTTPLAPDEAQGPNAARYTRRDHSISLRHSE 803

Query: 886 RGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQG 945
            G+V +V+L++N DG  F  V +R VR P +GDKFSS HGQKG +G   +QE+ P+T++G
Sbjct: 804 NGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEG 863

Query: 946 IVPDIVINPHAF 957
           I PDI++NPHA 
Sbjct: 864 ITPDIIVNPHAI 875


>gi|269859858|ref|XP_002649653.1| DNA-directed RNA polymerases I, II, and III, subunit 2
            [Enterocytozoon bieneusi H348]
 gi|220067016|gb|EED44485.1| DNA-directed RNA polymerases I, II, and III, subunit 2
            [Enterocytozoon bieneusi H348]
          Length = 1107

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 361/1206 (29%), Positives = 556/1206 (46%), Gaps = 178/1206 (14%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVT 92
            FF +  LV   I S+N FI+  +++   +    I++   D         R   +R+  + 
Sbjct: 11   FFADKNLVRQHIESFNYFIEKEIKEIVQA--NDIIDSDID---------RNFYLRYLNIR 59

Query: 93   LDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYI 152
            ++KP+        E  ++P+  R++++TY+  + V +++                +E  I
Sbjct: 60   VEKPTMIENMV--EQIIYPQECRIRDITYAGNIYVDIEYI-------------KNKEVII 104

Query: 153  QKEVLSDETTNIIIGRIPVMVKSDLCWMK------------------GVEKGDCDFDHGG 194
            +K        NI +G++P+M++S  C +                     +  +C +D+GG
Sbjct: 105  KK--------NISMGKMPIMIRSSKCHLTTHMLNSKIIMNERQKNLINYKTQECIYDNGG 156

Query: 195  YFIIKGAEKVFVAQEQICLKRLWVS---NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIK 251
            YFIIKG EKV   QEQ    R+ +    N +  ++   S   +N+  V +    KF    
Sbjct: 157  YFIIKGVEKVIHIQEQQSKNRIIIEMGKNGLYTSMTSSSIKHKNKTNV-IYKNDKF---- 211

Query: 252  GGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKC 311
                + +  F+  ++PI ++   LG+++D+EIV+ I    E   ++ + F  +++ D   
Sbjct: 212  ---YIQNTIFIE-DVPIVLVLKTLGLNTDEEIVSYIG--KEGVELMELSFGEVYEKD--- 262

Query: 312  DEFRKGRNALKYVDKLIKGTTFPPGE-STEECMNTYLFPSLH---GTKQKARFLGYMVKC 367
                   +AL  + K IK  +    E   +  +   LFP++      K K   L  M++ 
Sbjct: 263  --IYTETDALIELSKFIKLKSDDNKEIKVKSILAEKLFPNIKIDDDLKNKGICLCLMIRK 320

Query: 368  LLQAYSGRRKCDNRDDFRNKRLELAGELL----ERELKVHIAHARKRMAKALQRDLYGDR 423
            L+ A     K D++D   NKR ELAG+LL    E   K      +K + K L + +  + 
Sbjct: 321  LILAKQNLLKPDDKDYLGNKRFELAGQLLSILFEDTFKKFNFELKKSIDKILSKRIRTNE 380

Query: 424  TVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTR 483
                  + L    +T  LSRA S+G W+    + ER SG+   L R + +  L  + +  
Sbjct: 381  FDALTFFNLQTGSITTTLSRAISSGNWNLKRFKMER-SGVTHVLTRYSYITALGMMTKIN 439

Query: 484  QQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFN 543
               + T KV   R  HPS WG  C   TP+GE+CGLVKNL +   +ST     I + +  
Sbjct: 440  SHFEKTRKVSGPRSLHPSSWGMFCPADTPEGESCGLVKNLALLTEISTESDSDIIKNILQ 499

Query: 544  S-GMEKL--ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKR 600
            + G+ KL    ++ +    KF VF++G+  G+  +       +R+ RR  ++   V I  
Sbjct: 500  TLGVIKLKFCQESEFYAKNKFMVFINGELFGLTSNIEYLCCAIRKIRREGKINKFVSIFH 559

Query: 601  DELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQA----------LLDHGIIEL 650
            ++L++ + I  D GRI RPL++++      +    NY FQ           LL  G+IE 
Sbjct: 560  NKLENAIYISTDNGRICRPLIIIKKNSNFFT----NYQFQCNKIKYKSFNDLLLEGLIEY 615

Query: 651  VGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVL 710
            V   EE DC  A        +I +     +TH E+    +L L  G+IPF +H+ + R  
Sbjct: 616  VDVNEENDCLIALH----KSNINNLNIENYTHLEIADYSILSLIAGLIPFPHHNQSPRNT 671

Query: 711  YQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPE 770
            YQ      QAIG   TN   R D L  QL Y QRPL  + I D           I    +
Sbjct: 672  YQCA-MGKQAIGHIGTNIKKRFDLLMLQLNYTQRPLSCSKILD-----------INKYNK 719

Query: 771  LYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSD 830
            +  G NA+VAV  + GY+ ED++++N+ S+ERG  R E  ++ K E    E     ++ +
Sbjct: 720  IPAGINAMVAVMSYSGYDIEDAIIVNKDSIERGFMRVEVYKTIKIEF---ERFTNGKTEE 776

Query: 831  DMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIK-LKHT-ERGM 888
              +  GK Q                +G ++  GDI+I K   S  D  +K +K+    G 
Sbjct: 777  IYIVNGKEQ-------------IIEVGTHVMDGDILITKV--SPIDKKLKTVKYKGHPGY 821

Query: 889  VQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVP 948
            +  ++LS  DD K   +  +R+ R   +GDKFSS HGQKGV+G +  Q + PF   G+ P
Sbjct: 822  IDTIILSKGDDDKILKI-KVRETRCVEIGDKFSSRHGQKGVVGLIVPQVDLPFNEYGVCP 880

Query: 949  DIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVD--------- 999
            DI++NPH FPSR T G++LE  +G  +  L     +G    ATPF   + D         
Sbjct: 881  DIIMNPHGFPSRMTVGKILEL-IGSKVTCL-----TGEYTDATPFENNTADNDLKTIFNT 934

Query: 1000 AITEQLHRA--------------GFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMS 1045
               E LH+               G+S  G +    G TGE   + IF GP FYQRL HM 
Sbjct: 935  TNQEPLHKEHRQTELLCQILIDHGYSYSGKDVFTSGITGEQFEAYIFFGPIFYQRLKHMV 994

Query: 1046 EDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQ 1105
             DK+  R+ GP   LTRQP   R + GG++ GEMERDCLI +GA + L+ERL   SD + 
Sbjct: 995  ADKIHCRSRGPRAVLTRQPTEGRSKDGGLRLGEMERDCLIGYGANSLLNERLMHCSDEFD 1054

Query: 1106 MHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
              IC  C             G       C  C     IVK  +PY  KLL QE+ +M I 
Sbjct: 1055 AFICETC-------------GIICYKERCYWCSKKPIIVK--MPYACKLLFQEMMAMNIL 1099

Query: 1166 LKFDTE 1171
             K   E
Sbjct: 1100 PKIILE 1105


>gi|120561269|gb|ABM27019.1| RNA polymerase II second largest subunit, partial [Chytriomyces
            hyalinus]
          Length = 883

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 294/906 (32%), Positives = 458/906 (50%), Gaps = 86/906 (9%)

Query: 201  AEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEK 255
            +EKV + QE++    ++V       +  ++V  +S+ ++   +   + M          +
Sbjct: 1    SEKVLIGQERMATNHVFVFAKKQPATYLYSVEIRSQGEKASKLASTLFMKMMAPKGDMGQ 60

Query: 256  VL--SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA------ 307
            V+  S+ ++  ++PI ++F ALG+ SDKEI+  I +  +D  +L +L   I +A      
Sbjct: 61   VIKTSLPYIKQDVPIVVVFRALGIISDKEIMEKICYDFDDTPMLELLKPCIEEAFPIQTR 120

Query: 308  DNKCDEF-RKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVK 366
            +   D   R+G++     +K IK       +  ++ M  ++    H   +KA F GYM+ 
Sbjct: 121  EVALDYIGRRGQSVGATKEKRIKYAM----DILQKEMLPHVGTKAHQETRKAYFFGYMIH 176

Query: 367  CLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRT-- 424
             LL A   RR  D+RD F  KRL+LAG L+ +  ++      K + + LQ+ +  ++   
Sbjct: 177  RLLLATMQRRDFDDRDHFGKKRLDLAGPLMTQLFRILFRKLTKDITRQLQKHVESNKAFN 236

Query: 425  VRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQ 484
            ++ +E  LDA++L NGL  + +TG W    K ++  +G+   L R     TL  LRR   
Sbjct: 237  IQSLERSLDANVLKNGLKYSLATGNWGDQSKASQARAGVSQVLNRYTFASTLSHLRRLNS 296

Query: 485  QVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFN 543
                 GK+   R  H + WG +C   TP+G+ CGLVKN+ +  +++      P  E L  
Sbjct: 297  PTDRDGKLAKPRQLHNTQWGMVCPAETPEGQACGLVKNMSLMAIITVGTSSGPFIEHLEE 356

Query: 544  SGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDEL 603
              ME L +     L    KVF++G W+GV ++  + V  LR  RR  E+  +V I  D  
Sbjct: 357  LSMETLEEVGPSVLKDATKVFLNGMWLGVHREPENLVENLRSTRRNCEVSPEVSIVHDVT 416

Query: 604  QSEVRIFMDAGRILRPLLVVENMGKIKSLE----------GKNYTFQALLDHGIIELVGT 653
            + E+R++ DAGRI RPL +V+   +   ++            + TF  LL  G++E + T
Sbjct: 417  ECELRLYTDAGRISRPLFIVDKESQKLLIQRAHVLALRDPETDATFVDLLSEGVVEYIDT 476

Query: 654  EEEEDCCTAW-------------GIKYLLKD---IEDKKPI-----KFTHCELDMSFLLG 692
            EEEE    A              GI  + K+    E  + I      +THCE+  S +LG
Sbjct: 477  EEEETAMIAMSPDDLESARKAARGIPEIKKERNRTERSQTISALTLNWTHCEIHPSMILG 536

Query: 693  LSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMIS 752
            +   IIPF +H+ + R  YQS     QA+G   T+   R+D   + LFYPQ+PL      
Sbjct: 537  ICASIIPFPDHNQSPRNCYQS-AMGKQAMGIFLTSFQYRMDQTMNILFYPQKPL------ 589

Query: 753  DCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRS 812
             C     Y     L   EL  GQNAIV +  + GYNQEDSL+MN++S+++G+FRS + + 
Sbjct: 590  ACTRSMEY-----LRFRELPAGQNAIVCICCYSGYNQEDSLIMNQSSIDKGLFRSLYFKV 644

Query: 813  YKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA- 871
            Y  + + KE   +  + +  +    ++ + G  D LD DG    G  +   DI+IGK   
Sbjct: 645  Y-IDTEKKEGMTQLETIEKPMRENTLRMRQGSYDKLDVDGLVSPGVRVSGDDILIGKTVP 703

Query: 872  --------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLG 917
                           +  D S  LK TE G++ +V++++N DG  F  V +R +R P +G
Sbjct: 704  LPKDSEEMGQRTSGHTKRDDSTPLKSTEAGIIDQVMVTTNADGYKFVKVRMRSIRVPQIG 763

Query: 918  DKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAA 977
            DKF+S HGQKG  G     E+ PFT  GI PDI+INPHA PSR T G L+E  LGK    
Sbjct: 764  DKFASRHGQKGTCGITYRNEDMPFTRDGITPDIIINPHAIPSRMTIGHLVECLLGK---- 819

Query: 978  LGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTF 1037
                  +G +  ATPF   +V+ I+ +L   GF K G E L++G TG+ + + ++ GPT+
Sbjct: 820  --VATHTGHEGDATPFTDVNVEEISRELEAFGFQKRGFEVLFNGHTGKKLNAQVYTGPTY 877

Query: 1038 YQRLIH 1043
            YQRL H
Sbjct: 878  YQRLKH 883


>gi|68131852|gb|AAY85204.1| RNA polymerase II second largest subunit [Dillenia suffruticosa]
          Length = 868

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 298/909 (32%), Positives = 470/909 (51%), Gaps = 105/909 (11%)

Query: 109 MFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGR 168
           +FP+ ARL+N+TYS+ + V V       KR+     K G +   ++   + +   + IG+
Sbjct: 5   LFPKAARLRNLTYSAPLYVDVT------KRI----IKKGHD--CEEVTETQDFAKVFIGK 52

Query: 169 IPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV---- 218
           +P+M++S  C +         E G+C +D GGYFII G+EKV +AQE++    ++V    
Sbjct: 53  VPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKR 112

Query: 219 -SNSMGWTVAYKS-ENKRNR----LIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILF 272
             N   +    +S    +NR    + VR++  +  +    G    ++ ++ TEIPI I+F
Sbjct: 113 QPNKYAFVAEVRSMAESQNRPPSSMFVRMLSRTSAK----GYIRATLPYIRTEIPIIIVF 168

Query: 273 FALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTT 332
            ALG  +DK+I+  I +   D  ++ +L  S+ +A       +  + AL Y+ K  +G+T
Sbjct: 169 RALGFVADKDILEHICYDFSDTQMMELLRPSLEEAF----VIQNQQVALDYIGK--RGST 222

Query: 333 FPPGESTE-------ECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRRKCDNR 381
              G + E       E +   + P +    +   +KA + GY++  LL    GRR  D+R
Sbjct: 223 V--GVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDDR 280

Query: 382 DDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGL 441
           D + NKRL+LAG LL    ++      + +   +Q+ +   + V  +++ + A  +T+GL
Sbjct: 281 DHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVN-LQFAIKAKPITSGL 339

Query: 442 SRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPS 501
             + +TG W        R +G+   L R     TL  LRR    +   GK+   R  H S
Sbjct: 340 KYSLATGNWGQANAAGTR-AGVSQVLNRLTYSSTLSHLRRLNSPIGREGKLAKPRQLHNS 398

Query: 502 HWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGK 560
           HWG +C   TP+G+ CGLVKNL +   ++  S   PI E L     E   + +   +   
Sbjct: 399 HWGMMCPAETPEGQACGLVKNLALMVYITVGSAANPILEFLEEWSTENFEEISPAVIPQA 458

Query: 561 FKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPL 620
            K+FV+G W+G+ ++    V  LR+ RR+ ++ T+V + RD    E+R++ D GR  RPL
Sbjct: 459 TKIFVNGCWVGIHRNPDLLVKTLRQLRRQVDVNTEVGVIRDIRLKELRLYTDYGRCSRPL 518

Query: 621 LVVENM------GKIKSLEGKNYT----FQALLDHGIIELVGTEEEEDCCTAWGIKYLLK 670
            +VE          I++L+ +       +  L+  G IE V TEEEE    +  I  L+ 
Sbjct: 519 FIVEKQRLLIKKKDIRALQQRESPEEGGWHDLVAKGFIEYVDTEEEETTMISMTINDLVS 578

Query: 671 ---DIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTN 727
              + E+     +THCE+  S +LG+   IIPF +H+ + R  YQS     QA+G   TN
Sbjct: 579 ARLNPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGIYVTN 637

Query: 728 PSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGY 787
             +R+DTL++ L+YPQ+PL  T   + L      H   LP      G N+IVA+  + GY
Sbjct: 638 YQLRMDTLAYVLYYPQKPLVTTRAMEHL------HFRQLP-----AGINSIVAIACYSGY 686

Query: 788 NQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK------IQSK 841
           NQEDS++MN++S++RG FRS   RSY+ E       +K        +FG+      +  +
Sbjct: 687 NQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLIKE-------DFGRPNRENTMGMR 739

Query: 842 IGRVDSLDDDGFPFIGANLQSGDIVIGKYAD-------------SGADHSIKLKHTERGM 888
            G  D LDDDG    G  +   D++IGK +              +  DHS  L+H+E GM
Sbjct: 740 HGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIAQDDAQGVSSRYTRRDHSTSLRHSESGM 799

Query: 889 VQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVP 948
           V +V+L++N DG  F  V +R VR P +GDKFSS HGQKG +G   +QE+ P+T++GI P
Sbjct: 800 VDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITP 859

Query: 949 DIVINPHAF 957
           DI++NPHA 
Sbjct: 860 DIIVNPHAI 868


>gi|120561271|gb|ABM27020.1| RNA polymerase II second largest subunit, partial [Chytriomyces
            hyalinus]
          Length = 883

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 292/906 (32%), Positives = 457/906 (50%), Gaps = 86/906 (9%)

Query: 201  AEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEK 255
            +EKV + QE++    ++V       +  ++V  +S+ ++   +   + M          +
Sbjct: 1    SEKVLIGQERMATNHVFVFAKKQPATYLYSVEIRSQGEKASKLASTLFMKMMAPKGDMGQ 60

Query: 256  VL--SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDA------ 307
            V+  S+ ++  ++PI ++F ALG+ SDKEI+  I +  +D  +L +L   I +A      
Sbjct: 61   VIKTSLPYIKQDVPIVVVFRALGIISDKEIMEKICYDFDDTPMLELLKPCIEEAFPIQTR 120

Query: 308  DNKCDEF-RKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVK 366
            +   D   R+G++     +K IK       +  ++ M  ++    H   +KA F GYM+ 
Sbjct: 121  EVALDYIGRRGQSVGATKEKRIKYAM----DILQKEMLPHVGTKAHQETRKAYFFGYMIH 176

Query: 367  CLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRT-- 424
             LL A   RR  D+RD F  KRL+LAG L+ +  ++      K + + LQ+ +  ++   
Sbjct: 177  RLLLATMQRRDFDDRDHFGKKRLDLAGPLMTQLFRILFRKLTKDITRQLQKHVESNKAFN 236

Query: 425  VRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQ 484
            ++ +E  LDA++L NGL  + +TG W    K ++  +G+   L R     TL  LRR   
Sbjct: 237  IQSLERSLDANVLKNGLKYSLATGNWGDQSKASQARAGVSQVLNRYTFASTLSHLRRLNS 296

Query: 485  QVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFN 543
                 GK+   R  H + WG +C   TP+G+ CGLVKN+ +  +++      P  E L  
Sbjct: 297  PTDRDGKLAKPRQLHNTQWGMVCPAETPEGQACGLVKNMSLMAIITVGTSSGPFIEHLEE 356

Query: 544  SGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDEL 603
              ME L +     L    KVF++G W+GV ++  + V  LR  RR  E+  +V I  D  
Sbjct: 357  LSMETLEEVGPSVLKDATKVFLNGMWLGVHREPENLVENLRSTRRNCEVSPEVSIVHDVT 416

Query: 604  QSEVRIFMDAGRILRPLLVVENMGKIKSLE----------GKNYTFQALLDHGIIELVGT 653
            + E+R++ DAGRI RPL +V+   +   ++            + TF  LL  G++E + T
Sbjct: 417  ECELRLYTDAGRISRPLFIVDKESQKLLIQRAHVLALRDPETDATFVDLLSEGVVEYIDT 476

Query: 654  EEEEDCCTAW-------------GIKYLLKDIEDKK--------PIKFTHCELDMSFLLG 692
            EEEE    A              GI  + K+    +         + +THCE+  S +LG
Sbjct: 477  EEEETAMIAMSPDDLESARKAARGIPEIKKERNRTERSQTVSALTLNWTHCEIHPSMILG 536

Query: 693  LSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMIS 752
            +   IIPF +H+ + R  YQS     QA+G   T+   R+D   + LFYPQ+PL      
Sbjct: 537  ICASIIPFPDHNQSPRNCYQS-AMGKQAMGIFLTSFQYRMDQTMNILFYPQKPL------ 589

Query: 753  DCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRS 812
             C     Y     L   EL  GQNAIV +  + GYNQEDSL+MN++S+++G+FRS + + 
Sbjct: 590  ACTRSMEY-----LRFRELPAGQNAIVCICCYSGYNQEDSLIMNQSSIDKGLFRSLYFKV 644

Query: 813  YKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA- 871
            Y  + + KE   +  + +  +    ++ + G  D LD DG    G  +   DI+IGK   
Sbjct: 645  Y-IDTEKKEGMTQLETIEKPMRENTLRMRQGSYDKLDVDGLVSPGVRVSGDDILIGKTVP 703

Query: 872  --------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLG 917
                           +  D S  LK TE G++ +V++++N DG  F  V +R +R P +G
Sbjct: 704  LPKDSEEMGQRTSGHTKRDDSTPLKSTEAGIIDQVMVTTNADGYKFVKVRMRSIRVPQIG 763

Query: 918  DKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAA 977
            DKF+S HGQKG  G     E+ PFT  GI PDI+INPHA PSR T G L+E  LGK    
Sbjct: 764  DKFASRHGQKGTCGITYRNEDMPFTRDGITPDIIINPHAIPSRMTIGHLVECLLGK---- 819

Query: 978  LGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTF 1037
                  +G +  ATPF   +V+ I+ +L   GF K G E L++G TG+ + + ++ GPT+
Sbjct: 820  --VATHTGHEGDATPFTDVNVEEISRELEAFGFQKRGFEVLFNGHTGKKLNAQVYTGPTY 877

Query: 1038 YQRLIH 1043
            YQRL H
Sbjct: 878  YQRLKH 883


>gi|119618187|gb|EAW97781.1| polymerase (RNA) III (DNA directed) polypeptide B, isoform CRA_b
            [Homo sapiens]
          Length = 1177

 Score =  441 bits (1134), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 366/1227 (29%), Positives = 549/1227 (44%), Gaps = 186/1227 (15%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYASMRFG 89
            +F    GLV   I+S+N FI   ++K        I++     +   +  W  +Y ++  G
Sbjct: 32   AFLKVKGLVKQHIDSFNYFINVEIKK--------IMKANEKVTSDADPMWYLKYLNIYVG 83

Query: 90   QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
               +++ SF          + P   RL++MTYS+ + V +++              T   
Sbjct: 84   LPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEY--------------TRGS 123

Query: 150  QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
            Q I +  L        IGR+P+M++S  C + G       +  +C  D GGYFI+KG EK
Sbjct: 124  QRIIRNALP-------IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEK 176

Query: 204  VFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLS 263
            V + QEQ+   R+ V       V            V   +M+    +K G   L    LS
Sbjct: 177  VILIQEQLSKNRIIVEADRKGAVGAS---------VTRTNMA----VKQGRFYLRHNTLS 223

Query: 264  TEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKY 323
             +IPI I+F A+GV SD+EIV +I     +  ++     S+ +   K   F +   ALKY
Sbjct: 224  EDIPIVIIFKAMGVESDQEIVQMIG---TEEHVMAAFGPSLEEC-QKAQIFTQ-MQALKY 278

Query: 324  VDKLIKGTTF----PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRR--- 376
            +   ++        P     EE     L  S   T    +   +  KC+  A   RR   
Sbjct: 279  IGNKVRRQRMWGGGPKKTKIEEARE--LLASTILTHVPVKEFNFRAKCIYTAVMVRRVIL 336

Query: 377  -----KCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR-PIEY 430
                 K D+RD + NKRLELAG+LL    +         M K   + +   R  +  +  
Sbjct: 337  AQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVK 396

Query: 431  YLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTG 490
            ++    +TNG+  A STG WS    + +R  G+   L R + +  L  + R   Q + T 
Sbjct: 397  HMRQDQITNGMVNAISTGNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQFEKTR 455

Query: 491  KVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKL 549
            KV   R   PS WG +C   TP+GE CGLVKNL +   ++T + + PI +   N G+E +
Sbjct: 456  KVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDV 515

Query: 550  ----ADDASYSLGGKFKVFVDGDWI---GVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
                 ++ SY     F VF++G +I    V +D    V+  R  RR   +   V I  + 
Sbjct: 516  NLLCGEELSYP--NVFLVFLNGGYIIETCVIRDHKKLVNTFRLMRRAGYINEFVSISTNL 573

Query: 603  LQSEVRIFMDAGRILRPLL-----VVENMGKIKSLEGKNYTF------------------ 639
                V I  D GR+ R +      V +N+  I +LE     F                  
Sbjct: 574  TDRCVYISSDGGRLCRYICRLLKRVFKNLF-IFALERNRLVFIFETVLTSFIVKINLIPN 632

Query: 640  -QALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIK------------------- 679
             +  L   ++E +   EE DC  A   ++ +  +E    I                    
Sbjct: 633  FEDFLHESLVEYLDVNEENDCNIAL-YEHTINKLECSGMISAHCNLRLPGSSNSPASASQ 691

Query: 680  ------FTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVD 733
                   TH E++   LLG+  G+IP+ +H+ + R  YQ      QA+G    N   R+D
Sbjct: 692  VAATTDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-AMGKQAMGTIGYNQRNRID 750

Query: 734  TLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSL 793
            TL + L YPQ+P+ +T   +           ++   +L  GQNA VAV  + GY+ ED+L
Sbjct: 751  TLMYLLAYPQKPMVKTKTIE-----------LIEFEKLPAGQNATVAVMSYSGYDIEDAL 799

Query: 794  VMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGF 853
            V+N+ASL+RG  R    ++ K  +     Q   +    M++    +  I R + LD DG 
Sbjct: 800  VLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLD-AATRKPIWRHEILDADGI 858

Query: 854  PFIGANLQSGDIVIGKYADSGA----------------DHSIKLKHTERGMVQKVVLSSN 897
               G  +++  +++ K   +                  D  I  K      ++KV++SSN
Sbjct: 859  CSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSN 918

Query: 898  DDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAF 957
             +      + LRQ R P +GDKFSS HGQKGV G +  QE+ PF   GI PDI++NPH F
Sbjct: 919  AEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGF 978

Query: 958  PSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTER 1017
            PSR T G+L+E   GK       G+  G   Y T F    V  + E L R G++  G + 
Sbjct: 979  PSRMTVGKLIELLAGKA------GVLDGRFHYGTAFGGSKVKDVCEDLVRHGYNYLGKDY 1032

Query: 1018 LYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFG 1077
            +  G TGE + + I+ GP +YQ+L HM  DK+  R  GP   LTRQP   R R GG++ G
Sbjct: 1033 VTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLG 1092

Query: 1078 EMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRIC 1137
            EMERDCLI +GA+  L ERL   SD++++ +C +C             G      +C  C
Sbjct: 1093 EMERDCLIGYGASMLLLERLMISSDAFEVDVCGQC-------------GLLGYSGWCHYC 1139

Query: 1138 DSGDDIVKANVPYGAKLLCQELFSMGI 1164
             S   +    +PY  KLL QEL SM I
Sbjct: 1140 KSSCHVSSLRIPYACKLLFQELQSMNI 1166


>gi|440631707|gb|ELR01626.1| DNA-directed RNA polymerase III subunit C2 [Geomyces destructans
            20631-21]
          Length = 1187

 Score =  441 bits (1134), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 348/1158 (30%), Positives = 546/1158 (47%), Gaps = 170/1158 (14%)

Query: 32   SFFNEYGLVSHQINSYNEFIKNGLQKAF--DSFGETIVEPGYDPSKKGEGEW-RYASMRF 88
            +F    GLV   I+S+N F+ + ++     + F  + V+  +         W  Y  +R 
Sbjct: 103  AFLKVKGLVKQHIDSFNYFVDHEIKDILKANKFVRSDVDNTF---------WLEYTDIRV 153

Query: 89   GQVT-LD----KPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDK 143
            G    LD    KP          +D+ P   RL+++TY++ + V +++     KR+ + +
Sbjct: 154  GAPERLDYDDRKPL---------NDVTPNECRLRDLTYAAPIFVDIKY--VRGKRIVARR 202

Query: 144  FKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKG------DCDFDHGGYFI 197
                                I IGR+P+M+KS  C +     G      +C  D GGYFI
Sbjct: 203  -------------------GIPIGRMPIMLKSSKCRLTSRNDGQLAYMNECALDPGGYFI 243

Query: 198  IKGAEKVFVAQEQICLKRLWVSN----SMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGG 253
            + G EKV + QEQ+   R+ V      SM       S ++R          SK   +   
Sbjct: 244  VNGTEKVILVQEQLSKNRVIVETDAKKSMVSASVTSSTHERK---------SKSYVVMKK 294

Query: 254  EKV-LSVYFLSTEIPIWILFFALGVSSDKEIVNLI---DFTCEDCSILNILFASIHDADN 309
            E++ L    L+  +PI I   A+ V SD E++ L+   D T +D   +N   A+      
Sbjct: 295  ERIYLQHNVLTEAVPIVIALKAMAVQSDHEMLLLVAGTDATYQDDFAVNFEEAA------ 348

Query: 310  KCDEFRKGRNALKYVDKLIKGTTFPPG------------ESTEECMNTYLFPSLHGTKQK 357
            K   F + + AL+++   +K      G            E+    + T++       + K
Sbjct: 349  KLGIFSQ-QQALEWIGGRVKMGKSRFGQPQRRNFAQDGLEALANIVITHVPVVGLDFRPK 407

Query: 358  ARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLE-----------RELKVHIAH 406
            A ++ +MV+ +L A    +  D+RD   NKRLELAG+LL             +LK++I  
Sbjct: 408  ALYVCFMVRRVLMAMHDPKLVDDRDYVGNKRLELAGQLLSLLFEDLFKKFNSDLKMNIDK 467

Query: 407  ARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVAN 466
              K+  +  + D Y              + +T G++RA STG WS    + ER +G+   
Sbjct: 468  VLKKPNRTNEFDAYQHMQSH-------GNYITQGMNRAISTGNWSLKRFKMER-AGVTHV 519

Query: 467  LGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV- 525
            L R + +  L  + R   Q + T KV   R   PS +G +C   TP+GE CGLVKNL + 
Sbjct: 520  LSRLSYIAALGMMTRISSQFEKTRKVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLALM 579

Query: 526  TGLVSTSILEPIFEQLFNSGMEKLADDASYSL--GGKFKVFVDGDWIGVCKDSLSFVSEL 583
            T + +    EP+ + +F  G E +   +   +   G + +F++G  + + +   +F++  
Sbjct: 580  THITTNDDEEPVRKLVFVLGAEDIVSMSGKEIYDDGAYVIFINGTPLALTRKPKAFLAGF 639

Query: 584  RRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN-MGKIK-----SLEGKNY 637
            +  RR   +   V    +   S V I  D GRI RPL++V N + +IK     +L     
Sbjct: 640  KTFRRTGRVSEFVSCYINHHTSSVHIATDEGRICRPLIIVTNGVPRIKDHHLAALRDGTM 699

Query: 638  TFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGI 697
             F   L  G++E +   EE D   A          E+      TH E++   +LG   G+
Sbjct: 700  EFDDFLYRGLVEYIDCNEENDAMIAL--------YENAITPATTHLEIEPFTILGAVAGL 751

Query: 698  IPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGK 757
            IP+ +H+ + R  YQ      QAIG    N   R+DTL + + YPQ P+ +T   +    
Sbjct: 752  IPYPHHNQSPRNTYQC-AMGKQAIGAIAYNQFARIDTLLYLMVYPQAPMVKTRTIE---- 806

Query: 758  PGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEV 817
                   ++   +L  GQNAIVAV  + GY+ ED+LV+NRASL+RG  R + +R Y    
Sbjct: 807  -------LIRYDKLPAGQNAIVAVMSYSGYDIEDALVLNRASLDRGFGRCQVLRKYA--- 856

Query: 818  DNKEMQVKRRSSD-------DMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKY 870
              K ++   RS+D       ++         I +   L  DG   +G   ++GD+ + K 
Sbjct: 857  -TKLLKYANRSADRIGDRDFEVRASDGATVPIEKHQLLGADGLAHVGEIARNGDVYVKKE 915

Query: 871  -----------ADSG-----ADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSP 914
                       +DSG      D S+  +  +   + K+++S  ++      V  RQ R P
Sbjct: 916  TPLNTSSTGIGSDSGRSSDMKDASMSYRLPDPAYIDKIMISQTENESTVIKVQTRQTRRP 975

Query: 915  CLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKG 974
             LGDKFSS HGQKGV+G +   ++ PF   GI PDI++NPH FPSR T G++LE   GK 
Sbjct: 976  ELGDKFSSRHGQKGVVGLIAPAQDLPFADSGITPDIIMNPHGFPSRMTVGKMLELLSGK- 1034

Query: 975  IAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIG 1034
                  G+  G   Y T F    V+ + + L  +G++  G E L  G TGE + + +F+G
Sbjct: 1035 -----SGVIRGTHEYGTCFGGSKVEEMGQGLVDSGYAYAGKEFLTSGITGEALPAYVFMG 1089

Query: 1035 PTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLH 1094
            P +YQ+L HM +DK+  R+ GP   LTRQP   R R GG++ GEMERDCLIA+GA+  L 
Sbjct: 1090 PIYYQKLKHMVQDKLHSRSRGPRAILTRQPTEGRSRQGGLRLGEMERDCLIAYGASQLLL 1149

Query: 1095 ERLFTLSDSYQMHICRKC 1112
            ERL   SD++++ +C +C
Sbjct: 1150 ERLMLSSDAHEVDVCERC 1167


>gi|387592536|gb|EIJ87560.1| RNA polymerase [Nematocida parisii ERTm3]
 gi|387595162|gb|EIJ92787.1| RNA polymerase [Nematocida parisii ERTm1]
          Length = 1089

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 348/1181 (29%), Positives = 540/1181 (45%), Gaps = 175/1181 (14%)

Query: 33   FFNEYGLVSHQINSYNEFIKNGLQKAF--DSFGETIVEPGYDPSKKGEGEWRYASMRFGQ 90
            F  E GL  H I S+N+F++  ++     ++F ++ V+  +              M++  
Sbjct: 27   FLYEKGLNRHHIESFNDFVEREIKTVLRTNNFIDSDVDSAF-------------YMKYTD 73

Query: 91   VTLDKPSFFAGNGGDEHDMF-----PRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
            + ++ PS        E +M      P   R++NMTYS  + V V+   YT+         
Sbjct: 74   IRVEPPSV-------EENMVKRYITPEECRIRNMTYSGDIVVDVE---YTRG-------- 115

Query: 146  TGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMK--------GVE------------- 184
                    K+++S  + N+++G++P+M+ S L   +        G++             
Sbjct: 116  --------KDIIS--SRNVVVGKMPIMLGSRLSLRQKEFMENQVGIDTSNMQRITNPMYT 165

Query: 185  --KGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSM-GWTVAYKSENKRNRLIVRL 241
              K +C +D GGYFI KG E+V + QEQ+   R+ +     G   A  + +   R     
Sbjct: 166  RPKNECPYDIGGYFICKGVERVLLMQEQLAKNRILIETDFRGDLCAVVTSSSLERKSKTK 225

Query: 242  VDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILF 301
            V M K          LS   L+ +IP+ I+   +GV++D EI  LI    +  SI +I  
Sbjct: 226  VVMKK------KLLYLSHNSLTEDIPLNIVMKGMGVTTDLEIDILIGQPVQ--SIAHI-- 275

Query: 302  ASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGT----KQK 357
                         R    AL ++   IK  +    E+    +   +   + GT    ++K
Sbjct: 276  -------------RTELEALAWIGSRIKTRSGGIDEA-RLLLCDIILAHIPGTGTDMRRK 321

Query: 358  ARFLGYMVKCLLQAYSGRRKC--DNRDDFRNKRLELAGELLERELKVHIAHARKRMAKAL 415
            A +L  M + L+   +G      +++D   NKR+EL G++L    +  +      + KAL
Sbjct: 322  AEYLSVMARMLIDTANGNTDTLQNDKDFVGNKRIELTGQMLSLLFEDLLKRLNTEIKKAL 381

Query: 416  QRDLYGDRTVRPIE----YYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRAN 471
             R L      + ++      ++  ++T GL RA STG+WS    R ER +GI   L R +
Sbjct: 382  DRVLCKRARAQELDALHFLVMNRGMITTGLLRAISTGSWSLKRFRMER-AGITQVLTRLS 440

Query: 472  PLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLG-VTGLVS 530
             L  +    R   Q + T KV   R  H S WG  C   TP+GE CGLVK+L  +T +  
Sbjct: 441  RLSAIGMCSRVSSQFEKTRKVSGPRALHCSQWGVFCPADTPEGEACGLVKSLAMLTEITP 500

Query: 531  TSILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRK 590
                E +   L   G+E ++  ++  +    K +V+G  IG+C D      ELR+ RR  
Sbjct: 501  AESEESVISALSFLGIEDISVISTGDMEKSKKCWVNGVIIGICSDPARMACELRKVRRNG 560

Query: 591  ELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLD 644
             +P+ V I    + +++ I  + GR+ RPL++VE+         I+ L+    T   LL 
Sbjct: 561  SIPSTVGI---WVNNDLFISTETGRLTRPLIIVEDGEPKLTQTHIRLLKEGYKTVNDLLR 617

Query: 645  HGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHD 704
             G+IE +   E ++   A     + +D         TH E+D + +LG   G+IP+ +H+
Sbjct: 618  EGLIECIDQNEAKNSLIAVWRTEITQDT--------THLEIDPAAILGYVAGVIPYPHHN 669

Query: 705  HARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNH 764
             + R  YQ      Q +G    +   R+D  +  +  PQRPL  T               
Sbjct: 670  QSPRNTYQC-AMGKQGVGVTGVDQRRRMDGANFFMVNPQRPLAATR-----------GME 717

Query: 765  ILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQV 824
            I+   EL  GQN  +AV    GY+ ED+L++N+AS++RG+ R+   +++   +       
Sbjct: 718  IIKYNELPAGQNLTIAVMSMSGYDIEDALILNKASIDRGIGRALLFKTHALSLRTYPG-- 775

Query: 825  KRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHT 884
                              G  D++  DG P  G  +Q G   I +    G+      +  
Sbjct: 776  ------------------GAADTIVGDGIPSPGMKVQEGITFIDRRTPMGSKAGAVYRGL 817

Query: 885  ERGMVQKV-VLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTI 943
            +   + K  ++ + DD      V +++ R P +GDKFSS HGQKGV+G +  QE+ PF  
Sbjct: 818  DSASIDKTAIMRTGDDLITIKAV-VKEHRIPRIGDKFSSRHGQKGVVGLILPQEDMPFNE 876

Query: 944  QGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITE 1003
             GI PD+V+NPH FPSR T G++LE   GK IA   K +    +  AT F       I  
Sbjct: 877  MGISPDLVMNPHGFPSRMTVGKILELVTGKSIANGSKKLT---QYAATAFGGVKAQDIAN 933

Query: 1004 QLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQ 1063
            +L   G+S+ G E L  G +GE +   IF GP FYQRL HM  DK+  R  GP   LTRQ
Sbjct: 934  ELISLGYSETGKETLICGTSGEQIPVRIFFGPVFYQRLKHMVTDKMHARARGPRAVLTRQ 993

Query: 1064 PVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVV 1123
            P   R R GG + GEMERDCLI +GA+  L ERL   SD +  H+C  CK +        
Sbjct: 994  PTEGRCRDGGFRLGEMERDCLIGYGASEILIERLVISSDKFMAHVCSGCKLI-------- 1045

Query: 1124 GGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
                 +    C  C  G ++ K  +PY  KLL QEL +M I
Sbjct: 1046 -----ISPSGCPGCGKGTEMQKIQMPYACKLLFQELMAMKI 1081


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.321    0.138    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,010,029,491
Number of Sequences: 23463169
Number of extensions: 843543408
Number of successful extensions: 1740584
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 17437
Number of HSP's successfully gapped in prelim test: 1605
Number of HSP's that attempted gapping in prelim test: 1632331
Number of HSP's gapped (non-prelim): 48119
length of query: 1173
length of database: 8,064,228,071
effective HSP length: 154
effective length of query: 1019
effective length of database: 8,745,867,341
effective search space: 8912038820479
effective search space used: 8912038820479
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 83 (36.6 bits)