BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001050
(1173 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LK40|RPD2A_ARATH DNA-directed RNA polymerase D subunit 2a OS=Arabidopsis thaliana
GN=NRPD2a PE=1 SV=1
Length = 1172
Score = 1693 bits (4385), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 814/1175 (69%), Positives = 970/1175 (82%), Gaps = 30/1175 (2%)
Query: 9 TDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVE 68
T +L +LGE FL++FC+KAA SFF++YGL+SHQ+NSYN FI++GLQ F SFGE +VE
Sbjct: 18 TGEINLSELGEGFLQSFCKKAATSFFDKYGLISHQLNSYNYFIEHGLQNVFQSFGEMLVE 77
Query: 69 PGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVK 128
P +D KK + +WRYA+++FG+VT++KP+FF+ + E + P HARLQNMTYS+R+KV
Sbjct: 78 PSFDVVKKKDNDWRYATVKFGEVTVEKPTFFSDD--KELEFLPWHARLQNMTYSARIKVN 135
Query: 129 VQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM--KGVE-- 184
VQ +V+ V SDKFKTG++ Y++K++L + +I+IG IPVMVKS LC KG E
Sbjct: 136 VQVEVFKNTVVKSDKFKTGQDNYVEKKILDVKKQDILIGSIPVMVKSILCKTSEKGKENC 195
Query: 185 -KGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVD 243
KGDC FD GGYF+IKGAEKVF+AQEQ+C KRLW+SNS WTV+++SENKRNR IVRL +
Sbjct: 196 KKGDCAFDQGGYFVIKGAEKVFIAQEQMCTKRLWISNS-PWTVSFRSENKRNRFIVRLSE 254
Query: 244 MSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFAS 303
K ED K EKVL+VYFLSTEIP+W+LFFALGVSSDKE ++LI F +D SI N L AS
Sbjct: 255 NEKAEDYKRREKVLTVYFLSTEIPVWLLFFALGVSSDKEAMDLIAFDGDDASITNSLIAS 314
Query: 304 IHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGY 363
IH AD C+ FR G NAL YV++ IK T FPP ES +EC++ YLFP L K+KARFLGY
Sbjct: 315 IHVADAVCEAFRCGNNALTYVEQQIKSTKFPPAESVDECLHLYLFPGLQSLKKKARFLGY 374
Query: 364 MVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDR 423
MVKCLL +Y+G+RKC+NRD FRNKR+ELAGELLERE++VH+AHAR++M +A+Q+ L GD
Sbjct: 375 MVKCLLNSYAGKRKCENRDSFRNKRIELAGELLEREIRVHLAHARRKMTRAMQKHLSGDG 434
Query: 424 TVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTR 483
++PIE+YLDAS++TNGLSRAFSTGAWSHPF++ ER+SG+VANLGRANPLQTL+DLRRTR
Sbjct: 435 DLKPIEHYLDASVITNGLSRAFSTGAWSHPFRKMERVSGVVANLGRANPLQTLIDLRRTR 494
Query: 484 QQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFEQLFN 543
QQV YTGKVGDARYPHPSHWG++CFLSTPDGENCGLVKN+ + GLVST LE + E+LF
Sbjct: 495 QQVLYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVSTQSLESVVEKLFA 554
Query: 544 SGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDEL 603
GME+L DD L GK KV ++GDW+G+C DS SFV+EL+ +RR+ ELP ++EIKRD+
Sbjct: 555 CGMEELMDDTCTPLFGKHKVLLNGDWVGLCADSESFVAELKSRRRQSELPREMEIKRDKD 614
Query: 604 QSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAW 663
+EVRIF DAGR+LRPLLVVEN+ K+K + Y F LLDHGI+EL+G EEEEDC TAW
Sbjct: 615 DNEVRIFTDAGRLLRPLLVVENLQKLKQEKPSQYPFDHLLDHGILELIGIEEEEDCNTAW 674
Query: 664 GIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGF 723
GIK LLK+ P +THCELD+SFLLG+SC ++PFANHDH RRVLYQSQKH QAIGF
Sbjct: 675 GIKQLLKE-----PKIYTHCELDLSFLLGVSCAVVPFANHDHGRRVLYQSQKHCQQAIGF 729
Query: 724 PTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNV 783
+TNP+IR DTLS QLFYPQ+PLF+T+ S+CL K L+NGQNAIVAVNV
Sbjct: 730 SSTNPNIRCDTLSQQLFYPQKPLFKTLASECLKK-----------EVLFNGQNAIVAVNV 778
Query: 784 HLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIG 843
HLGYNQEDS+VMN+ASLERGMFRSE IRSYKAEVD K+ + KR+ D++V FGK SKIG
Sbjct: 779 HLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVDAKDSE-KRKKMDELVQFGKTHSKIG 837
Query: 844 RVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNF 903
+VDSL+DDGFPFIGAN+ +GDIVIG+ +SGADHSIKLKHTERG+VQKVVLSSND+GKNF
Sbjct: 838 KVDSLEDDGFPFIGANMSTGDIVIGRCTESGADHSIKLKHTERGIVQKVVLSSNDEGKNF 897
Query: 904 SVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTP 963
+ VSLRQVRSPCLGDKFSSMHGQKGVLG+LE Q+NFPFTIQGIVPDIVINPHAFPSRQTP
Sbjct: 898 AAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTP 957
Query: 964 GQLLEAALGKGIAAL-----GKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERL 1018
GQLLEAAL KGIA + L R+ATPF+TP V ITEQLHRAGFS+WG ER+
Sbjct: 958 GQLLEAALSKGIACPIQKEGSSAAYTKLTRHATPFSTPGVTEITEQLHRAGFSRWGNERV 1017
Query: 1019 YDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGE 1078
Y+GR+GEM+RS+IF+GPTFYQRL+HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGE
Sbjct: 1018 YNGRSGEMMRSMIFMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGE 1077
Query: 1079 MERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICD 1138
MERDCLIAHGA+ANLHERLFTLSDS QMHICRKCK ANVI+R GRK+RGPYCR+C
Sbjct: 1078 MERDCLIAHGASANLHERLFTLSDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVCV 1137
Query: 1139 SGDDIVKANVPYGAKLLCQELFSMGITLKFDTEFC 1173
S D +V+ VPYGAKLLCQELFSMGITL FDT+ C
Sbjct: 1138 SSDHVVRVYVPYGAKLLCQELFSMGITLNFDTKLC 1172
>sp|Q9LV32|RPD2B_ARATH DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana
GN=NRPD2b PE=2 SV=1
Length = 1119
Score = 1610 bits (4169), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 785/1184 (66%), Positives = 936/1184 (79%), Gaps = 76/1184 (6%)
Query: 1 MDSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFD 60
MD D+ ++ +LGE FL+TFC+KAA SFF E+GL+SHQ+NSYN FI++GLQ F+
Sbjct: 1 MDVDEIESAGQINISELGESFLQTFCKKAATSFFEEFGLISHQLNSYNFFIEHGLQNVFE 60
Query: 61 SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
SFG+ +VEP +D KK +G+WRYA+
Sbjct: 61 SFGDILVEPSFDVIKKKDGDWRYAT----------------------------------- 85
Query: 121 YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
V+ + + DKFKTG+++Y++KE+L + +I+IG IPVMVKS LC
Sbjct: 86 ------------VFKKIVIKHDKFKTGQDEYVEKEILDVKKQDILIGSIPVMVKSVLCKT 133
Query: 181 --KGVE---KGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRN 235
KG E KG+C FD GGYF+IKGAEKVF+AQEQ+C KRLW+SNS WTV+++SE KRN
Sbjct: 134 SEKGKENCKKGNCAFDQGGYFVIKGAEKVFIAQEQMCTKRLWISNS-PWTVSFRSETKRN 192
Query: 236 RLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCS 295
R IVRL + K ED K EKVL+VYFLSTEIP+W+LFFALGVSSDKE ++LI F +D S
Sbjct: 193 RFIVRLSENEKAEDYKIMEKVLTVYFLSTEIPVWLLFFALGVSSDKEAMDLIAFDGDDAS 252
Query: 296 ILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTK 355
I N L ASIH+AD C+ FR G NAL YV+ IK T FPP ES ++C+ YLFP L G K
Sbjct: 253 ITNSLIASIHEADAVCEAFRCGNNALTYVEHQIKSTKFPPAESVDDCLRLYLFPCLQGLK 312
Query: 356 QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKAL 415
+KARFLGYMVKCLL AY+G+RKC+NRD FRNKR+ELAGELLERE++VH+AHAR++M +A+
Sbjct: 313 KKARFLGYMVKCLLSAYAGKRKCENRDSFRNKRIELAGELLEREIRVHLAHARRKMTRAM 372
Query: 416 QRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQT 475
Q+ L GD ++PIE+YLDAS++TNGL+RAFSTGAWSHPF++ ER+SG+VANLGRANPLQT
Sbjct: 373 QKQLSGDGDLKPIEHYLDASVITNGLNRAFSTGAWSHPFRKMERVSGVVANLGRANPLQT 432
Query: 476 LVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE 535
L+DLRRTRQQV YTGKVGDAR+PHPSHWG++CFLSTPDGENCGLVKN+ + GLVST LE
Sbjct: 433 LIDLRRTRQQVLYTGKVGDARHPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVSTQGLE 492
Query: 536 PIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQ 595
+ E LF GME+L +D S L GK KV ++GDW+G+C DS SFV EL+ +RR+ ELP +
Sbjct: 493 SVVEMLFTCGMEELMNDTSTPLCGKHKVLLNGDWVGLCADSESFVGELKSRRRQSELPLE 552
Query: 596 VEIKRDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEE 655
+EIKRD+ +EVRIF DAGR+LRPLLVVEN+ K+K + Y F+ LLD GI+EL+G EE
Sbjct: 553 MEIKRDKDDNEVRIFTDAGRLLRPLLVVENLHKLKQDKPTQYPFKHLLDQGILELIGIEE 612
Query: 656 EEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQK 715
EEDC TAWGIK LLK+ P +THCELD+SFLLG+SC I+PFANHDH +RVLYQSQK
Sbjct: 613 EEDCTTAWGIKQLLKE-----PKNYTHCELDLSFLLGVSCAIVPFANHDHGKRVLYQSQK 667
Query: 716 HSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQ 775
H QAIGF +TNP+IR DTLS QLFYPQ+PLF+T+ S+CL K L+NGQ
Sbjct: 668 HCQQAIGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASECLEK-----------EVLFNGQ 716
Query: 776 NAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF 835
NAIVAVNVHLGYNQEDS+VMN+ASLERGMFRSE IRSYKAEVD K+ + KR+ D++V F
Sbjct: 717 NAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSYKAEVDTKDSE-KRKKMDELVQF 775
Query: 836 GKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSIKLKHTERGMVQKVVLS 895
GK SKIG+VDSL+DDGFPFIGAN+ +GDIVIG+ +SGADHSIKLKHTERG+VQKVVLS
Sbjct: 776 GKTYSKIGKVDSLEDDGFPFIGANMSTGDIVIGRCTESGADHSIKLKHTERGIVQKVVLS 835
Query: 896 SNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPH 955
SND+GKNF+ VSLRQVRSPCLGDKFSSMHGQKGVLG+LE Q+NFPFTIQGIVPDIVINPH
Sbjct: 836 SNDEGKNFAAVSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPH 895
Query: 956 AFPSRQTPGQLLEAALGKGIAAL------GKGICSGLKRYATPFATPSVDAITEQLHRAG 1009
AFPSRQTPGQLLEAAL KGIA + L R+ATPF+TP V ITEQLHRAG
Sbjct: 896 AFPSRQTPGQLLEAALSKGIACPIQKKEGSSAAYTKLTRHATPFSTPGVTEITEQLHRAG 955
Query: 1010 FSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRK 1069
FS+WG ER+Y+GR+GEM+RSLIF+GPTFYQRL+HMSE+KVKFRNTGPVHPLTRQPVADRK
Sbjct: 956 FSRWGNERVYNGRSGEMMRSLIFMGPTFYQRLVHMSENKVKFRNTGPVHPLTRQPVADRK 1015
Query: 1070 RFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKV 1129
RFGGI+FGEMERDCLIAHGA+ANLHERLFTLSDS QMHICRKCK ANVI+R GRK+
Sbjct: 1016 RFGGIRFGEMERDCLIAHGASANLHERLFTLSDSSQMHICRKCKTYANVIERTPSSGRKI 1075
Query: 1130 RGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTEFC 1173
RGPYCR+C S D +V+ VPYGAKLLCQELFSMGITL FDT+ C
Sbjct: 1076 RGPYCRVCASSDHVVRVYVPYGAKLLCQELFSMGITLNFDTKLC 1119
>sp|P38420|RPB2_ARATH DNA-directed RNA polymerase II subunit RPB2 OS=Arabidopsis thaliana
GN=RPB135 PE=2 SV=2
Length = 1188
Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/1219 (35%), Positives = 644/1219 (52%), Gaps = 118/1219 (9%)
Query: 16 DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEP--GYDP 73
D EE + ++F E GLV Q++S++EFI+N +Q+ D + + P ++P
Sbjct: 16 DDDEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNP 75
Query: 74 SKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQV 133
+ + + FGQ+ L KP + G+ +FP+ ARL+N+TYS+ + V V
Sbjct: 76 GHQSDFAETIYKISFGQIYLSKP-MMTESDGETATLFPKAARLRNLTYSAPLYVDVT--- 131
Query: 134 YTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM------KGVEKGD 187
KRV K G + ++ + + T + IG++P+M++S C + E G+
Sbjct: 132 ---KRV----IKKGHDG--EEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGE 182
Query: 188 CDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWT--VAYKSENKRNRLIVR 240
C +D GGYFII G+EKV +AQE++ ++V N + V +EN+
Sbjct: 183 CPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAENQNRPPSTM 242
Query: 241 LVDMSKFEDIKGGEK----VLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
V M KGG ++ ++ TEIPI I+F ALG +DK+I+ I + D +
Sbjct: 243 FVRMLARASAKGGSSGQYIRCTLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQM 302
Query: 297 LNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFP 349
+ +L S+ +A ++ AL Y+ K +G T G + E + + + P
Sbjct: 303 MELLRPSLEEAFVIQNQL----VALDYIGK--RGATV--GVTKEKRIKYARDILQKEMLP 354
Query: 350 SL----HGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIA 405
+ H +KA + GY++ LL GRR D+RD + NKRL+LAG LL ++
Sbjct: 355 HVGIGEHCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRMLFR 414
Query: 406 HARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVA 465
+ + +Q+ + + V +++ + A +T+GL + +TG W R +G+
Sbjct: 415 KLTRDVRSYVQKCVDNGKEVN-LQFAIKAKTITSGLKYSLATGNWGQANAAGTR-AGVSQ 472
Query: 466 NLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV 525
L R TL LRR + GK+ R H S WG +C TP+G+ CGLVKNL +
Sbjct: 473 VLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLAL 532
Query: 526 TGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELR 584
++ S PI E L G E + + + K+FV+G W+GV +D V LR
Sbjct: 533 MVYITVGSAAYPILEFLEEWGTENFEEISPSVIPQATKIFVNGMWVGVHRDPDMLVKTLR 592
Query: 585 RKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMG------KIKSLEGKNYT 638
R RRR ++ T+V + RD E+RI+ D GR RPL +V+N I +L+ +
Sbjct: 593 RLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDNQKLLIKKRDIYALQQRESA 652
Query: 639 ----FQALLDHGIIELVGTEEEEDCCTAWGIKYLLKD---IEDKKPIKFTHCELDMSFLL 691
+ L+ G IE + TEEEE + I L++ E+ +THCE+ S +L
Sbjct: 653 EEDGWHHLVAKGFIEYIDTEEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSLIL 712
Query: 692 GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
G+ IIPF +H+ + R YQS QA+G TN R+DTL++ L+YPQ+PL T
Sbjct: 713 GVCASIIPFPDHNQSPRNTYQS-AMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA 771
Query: 752 SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
+ L H LP G NAIVA++ + GYNQEDS++MN++S++RG FRS R
Sbjct: 772 MEHL------HFRQLP-----AGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFR 820
Query: 812 SYKAEVDNKEMQVKRRSSDDMVNFGK------IQSKIGRVDSLDDDGFPFIGANLQSGDI 865
SY+ E VK +FG+ + + G D LDDDG G + D+
Sbjct: 821 SYRDEEKKMGTLVKE-------DFGRPDRGSTMGMRHGSYDKLDDDGLAPPGTRVSGEDV 873
Query: 866 VIGKYAD-------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVR 912
+IGK + DHSI L+H+E GMV +V+L++N DG F V +R VR
Sbjct: 874 IIGKTTPISQDEAQGQSSRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 933
Query: 913 SPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALG 972
P +GDKFSS HGQKG +G +QE+ P+TI+G+ PDI++NPHA PSR T GQL+E +G
Sbjct: 934 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMG 993
Query: 973 KGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIF 1032
K A +GK + ATPF +VD I++ LH+ G+ G ER+Y+G TG + ++IF
Sbjct: 994 KVAAHMGK------EGDATPFTDVTVDNISKALHKCGYQMRGFERMYNGHTGRPLTAMIF 1047
Query: 1033 IGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAAN 1092
+GPT+YQRL HM +DK+ R GPV LTRQP R R GG++FGEMERDC+IAHGAA
Sbjct: 1048 LGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHF 1107
Query: 1093 LHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGA 1152
L ERLF SD+Y++H+C C +A K CR C + DIV+ +PY
Sbjct: 1108 LKERLFDQSDAYRVHVCEVCGLIAI-------ANLKKNSFECRGCKNKTDIVQVYIPYAC 1160
Query: 1153 KLLCQELFSMGITLKFDTE 1171
KLL QEL SM I + T+
Sbjct: 1161 KLLFQELMSMAIAPRMLTK 1179
>sp|Q42877|RPB2_SOLLC DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum
GN=RPB2 PE=2 SV=1
Length = 1191
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/1232 (34%), Positives = 654/1232 (53%), Gaps = 115/1232 (9%)
Query: 1 MDSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFD 60
MD +D + ++ D EE + ++F E GLV Q++S++EFI+N +Q+ D
Sbjct: 1 MDMEDE-YEPQYNVDDDEEEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVD 59
Query: 61 SFGETIVEP--GYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQN 118
+ + P ++P + + + FGQ+ L KP + G+ +FP+ ARL+N
Sbjct: 60 ESADIEIRPESQHNPGHQSDFAETIYKINFGQIYLSKP-MMTESDGETATLFPKAARLRN 118
Query: 119 MTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLC 178
+TYS+ + V V KRV K G + ++ + + T + IG++P+M++S C
Sbjct: 119 LTYSAPLYVDVT------KRV----IKKGHDG--EEVTETQDFTKVFIGKVPIMLRSSYC 166
Query: 179 WMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVA 227
+ E G+C D GGYFII G+EKV +AQE++ ++V N +
Sbjct: 167 TLYQNSEKDLTELGECPLDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAFVAE 226
Query: 228 YKS-ENKRNR----LIVRLVDMSKFEDIKGGEKV-LSVYFLSTEIPIWILFFALGVSSDK 281
+S + +NR + VR++ + + G+ + ++ ++ TEIPI I+F ALG +DK
Sbjct: 227 VRSMADTQNRPPSTMFVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADK 286
Query: 282 EIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES--- 338
+I+ I + D ++ +L S+ +A + + AL Y+ K +G T
Sbjct: 287 DILEHICYDFNDTQMMELLRPSLEEAF----VIQNQQVALDYIGK--RGATVGVTREKRI 340
Query: 339 --TEECMNTYLFPSL----HGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELA 392
+E + + P + + +KA + GY++ LL GRR D+RD + NKRL+LA
Sbjct: 341 KYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLA 400
Query: 393 GELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSH 452
G LL ++ + + +Q+ + + V +++ + A +T+GL + +TG W
Sbjct: 401 GPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVN-LQFAIKAKTITSGLKYSLATGNWGQ 459
Query: 453 PFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTP 512
R +G+ L R TL LRR + GK+ R H S WG +C TP
Sbjct: 460 ANAAGTR-AGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETP 518
Query: 513 DGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIG 571
+G+ CGLVKNL + ++ S PI E L G E + + + K+FV+G W+G
Sbjct: 519 EGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGTWVG 578
Query: 572 VCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENM----- 626
+ +D V LRR RRR ++ T+V + RD E+RI+ D GR RPL +VE
Sbjct: 579 IHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLMIK 638
Query: 627 -GKIKSLEGKNYT----FQALLDHGIIELVGTEEEEDCCTAWGIKYLLK---DIEDKKPI 678
I++L+ + + L+ G IE + TEEEE + I L++ + D
Sbjct: 639 KKDIQTLQQRESPDEGGWHDLVAKGYIEYIDTEEEETTMISMTINDLVQARLNPGDAYSD 698
Query: 679 KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQ 738
+THCE+ S +LG+ IIPF +H+ + R YQS QA+G TN R+DTL++
Sbjct: 699 TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGIYVTNYQFRMDTLAYV 757
Query: 739 LFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRA 798
L+YPQ+PL T + L H LP G NAIVA++ + GYNQEDS++MN++
Sbjct: 758 LYYPQKPLVTTRAMEHL------HFRQLP-----AGINAIVAISCYSGYNQEDSVIMNQS 806
Query: 799 SLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGK------IQSKIGRVDSLDDDG 852
S++RG FRS RSY+ E VK +FG+ + + G D LDDDG
Sbjct: 807 SIDRGFFRSLFFRSYRDEEKKMGTLVKE-------DFGRPDRASTMGMRHGSYDKLDDDG 859
Query: 853 FPFIGANLQSGDIVIGKYAD-------------SGADHSIKLKHTERGMVQKVVLSSNDD 899
G + D++IGK + DHS L+H+E GMV +V+L++N D
Sbjct: 860 LAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHSETGMVDQVLLTTNAD 919
Query: 900 GKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPS 959
G F V +R VR P +GDKFSS HGQKG +G +QE+ P+T++GI PDI++NPHA PS
Sbjct: 920 GLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPS 979
Query: 960 RQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLY 1019
R T GQL+E +GK A +GK + ATPF +VD I++ LH+ G+ G E +Y
Sbjct: 980 RMTIGQLIECIMGKVAAHMGK------EGDATPFTDVTVDNISKALHKCGYQMRGFETMY 1033
Query: 1020 DGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEM 1079
+G TG + ++IF+GPT+YQRL HM +DK+ R GPV LTRQP R R GG++FGEM
Sbjct: 1034 NGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEM 1093
Query: 1080 ERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDS 1139
ERDC+IAHGAA L ERLF SD+Y++H+C +C +A K CR C +
Sbjct: 1094 ERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAI-------ANLKKNSFECRGCKN 1146
Query: 1140 GDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
DIV+ ++PY KLL QEL +M I + T+
Sbjct: 1147 KTDIVQVHIPYACKLLFQELMAMAIAPRMLTK 1178
>sp|Q753Q4|RPB2_ASHGO DNA-directed RNA polymerase II subunit RPB2 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=RPB2 PE=3 SV=1
Length = 1222
Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/1222 (34%), Positives = 632/1222 (51%), Gaps = 118/1222 (9%)
Query: 32 SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
+FF E GLVS Q++S+N+FI +Q I+E + + + R + FG++
Sbjct: 32 AFFREKGLVSQQLDSFNQFINYTIQDLILEDSTLILEQLAQHTTEADNISRKYEISFGKI 91
Query: 92 TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
L KPS +G H M+P+ ARL+N+TY+S + V+++ + Y + K +
Sbjct: 92 YLAKPSMTESDGV-SHAMYPQEARLRNLTYASGLFVEIKKRTYEAVDIPGRDLKY---EI 147
Query: 152 IQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGAEKVF 205
IQ+E E I IGR+P+M++S C + + + D C FD GGYFII G+EKV
Sbjct: 148 IQEESEDTEEGKIFIGRVPIMLRSKYCLLDDLSESDLYRLKECPFDMGGYFIINGSEKVL 207
Query: 206 VAQEQICLKRLWV-SNSMGWTVAYKSE-----NKRNRLIVRL-VDMSKFEDIKGGEKVLS 258
+AQE+ + V S +++ +E K +R I L V + E +
Sbjct: 208 IAQERSAGNIVQVFKKSAPSPISHIAEIRSALEKGSRFISTLQVKLYGREGSTSRTIKAT 267
Query: 259 VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGR 318
+ ++ +IPI I+F ALG+ D EI+ I + D +L +L + + D
Sbjct: 268 LPYIKQDIPIVIIFRALGIIPDGEILEHICYDQNDWQMLEMLKPCVEEGFVIQDR----E 323
Query: 319 NALKYVDKLIKGTTFPPGES-----TEECMNTYLFP---SLHG-TKQKARFLGYMVKCLL 369
AL ++ + +GT + ++ + P L G +KA FLGYM+ LL
Sbjct: 324 TALDFIGR--RGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLL 381
Query: 370 QAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIE 429
R+ D+RD F KRL+LAG LL + K + + + +QR + + ++
Sbjct: 382 LCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVEEAKDFN-LK 440
Query: 430 YYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYT 489
+ A+ +T GL A +TG W K +G+ L R TL LRRT +
Sbjct: 441 LAVKATTITAGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRD 500
Query: 490 GKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEK 548
GK+ R H +HWG +C TP+G+ CGLVKNL + +S PI L GME
Sbjct: 501 GKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPVPIITFLNEWGMEP 560
Query: 549 LADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVR 608
L D + +VFV+G W G+ ++ V +R+ RR+ ++ +V I RD + E++
Sbjct: 561 LEDYVPHQSPDATRVFVNGVWHGIHRNPARLVDTIRKLRRKGDITAEVSIVRDIREKELK 620
Query: 609 IFMDAGRILRPLLVVENM-------------GKIKSL--------------EGKNYTFQA 641
IF DAGR+ RPL VV + G I+ L E NYT+ +
Sbjct: 621 IFTDAGRVYRPLFVVADTQHADGHKDLKVRKGHIRKLMLTEYQDIEGGFEDEDINYTWTS 680
Query: 642 LLDHGIIELVGTEEEEDCCTAWGIKYL----------LKDIEDKKPIK-------FTHCE 684
LL+ GI+E + EEEE A + L +++ + IK FTHCE
Sbjct: 681 LLNDGIVEYIDAEEEETILIAMQQEDLDPSVPQTVDPSDELDPARRIKAIHHSNTFTHCE 740
Query: 685 LDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQR 744
+ S +LG++ +IPF +H+ + R YQS QA+G TN ++R+DT+++ L+YPQ+
Sbjct: 741 IHPSMILGVAASVIPFPDHNQSPRNTYQSAM-GKQAMGVFLTNYNVRMDTMANILYYPQK 799
Query: 745 PLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGM 804
PL T + L EL GQNAIVA+ + GYNQEDS++MN++S++ G+
Sbjct: 800 PLGTTRAME-----------YLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDSGL 848
Query: 805 FRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGD 864
FRS RSY + M + S + ++ K G + LDDDG G + D
Sbjct: 849 FRSLFFRSYMDQEKRIGMSITE-SFEKPHRTNTLRMKHGTYEKLDDDGLIAPGVRVSGDD 907
Query: 865 IVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLR 909
I+IGK S D S L+ TE G+V +V++++N +G F V +R
Sbjct: 908 IIIGKTTPIPPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRVR 967
Query: 910 QVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEA 969
+ P +GDKF+S HGQKG +G +E+ PFT +G+VPD++INPHA PSR T L+E
Sbjct: 968 TTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGVVPDLIINPHAIPSRMTVAHLIEC 1027
Query: 970 ALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRS 1029
L K +AAL SG + A+PF +VD I++ L G+ G E +Y+G TG+ + +
Sbjct: 1028 LLSK-VAAL-----SGNEGDASPFTDITVDGISKLLREHGYQSRGFEVMYNGHTGKKLMA 1081
Query: 1030 LIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA 1089
IF GPT+YQRL HM +DK+ R GP+ LTRQPV R R GG++FGEMERDC+IAHGA
Sbjct: 1082 QIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGA 1141
Query: 1090 AANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVP 1149
AA L ERL SD++++HIC C + V+ ++ K CR C + DI + ++P
Sbjct: 1142 AAFLKERLMEASDAFRVHICGIC-GLMTVVAKL-----KHNQFECRGCKNKIDIYQVHIP 1195
Query: 1150 YGAKLLCQELFSMGITLKFDTE 1171
Y AKLL QEL +M I + T+
Sbjct: 1196 YAAKLLFQELMAMNIAPRLYTD 1217
>sp|P08518|RPB2_YEAST DNA-directed RNA polymerase II subunit RPB2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPB2 PE=1 SV=2
Length = 1224
Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/1258 (34%), Positives = 650/1258 (51%), Gaps = 138/1258 (10%)
Query: 2 DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVS-FFNEYGLVSHQINSYNEFIKNGLQKAFD 60
D D GF D ++ + + A +S FF E GLVS Q++S+N+F+ LQ
Sbjct: 12 DEDPYGFEDESAPITAEDSW-------AVISAFFREKGLVSQQLDSFNQFVDYTLQDIIC 64
Query: 61 SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
I+E + + + R + FG++ + KP +G H ++P+ ARL+N+T
Sbjct: 65 EDSTLILEQLAQHTTESDNISRKYEISFGKIYVTKPMVNESDGV-THALYPQEARLRNLT 123
Query: 121 YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSD-ETTNIIIGRIPVMVKSDLCW 179
YSS + V V+ + Y V + K + I +E D E+ + IGR+P+M++S C+
Sbjct: 124 YSSGLFVDVKKRTYEAIDVPGRELKY---ELIAEESEDDSESGKVFIGRLPIMLRSKNCY 180
Query: 180 MKGVEKGD------CDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE- 231
+ + D C FD GGYFII G+EKV +AQE+ + V + +++ +E
Sbjct: 181 LSEATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEI 240
Query: 232 ----NKRNRLIVRL-VDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNL 286
K +R I L V + E ++ ++ +IPI I+F ALG+ D EI+
Sbjct: 241 RSALEKGSRFISTLQVKLYGREGSSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEH 300
Query: 287 IDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGES-----TEE 341
I + D +L +L + D D AL ++ + +GT + ++
Sbjct: 301 ICYDVNDWQMLEMLKPCVEDGFVIQDR----ETALDFIGR--RGTALGIKKEKRIQYAKD 354
Query: 342 CMNTYLFP---SLHG-TKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLE 397
+ P L G +KA FLGYM+ LL R+ D+RD F KRL+LAG LL
Sbjct: 355 ILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLL- 413
Query: 398 RELKVHIAHARKRMAKALQRDL--YGDRTVRP-----IEYYLDASILTNGLSRAFSTGAW 450
A K + K L +D+ Y RTV ++ ++A +T+GL A +TG W
Sbjct: 414 -------AQLFKTLFKKLTKDIFRYMQRTVEEAHDFNMKLAINAKTITSGLKYALATGNW 466
Query: 451 SHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLS 510
K +G+ L R TL LRRT + GK+ R H +HWG +C
Sbjct: 467 GEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAE 526
Query: 511 TPDGENCGLVKNLGVTGLVSTSI-LEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDW 569
TP+G+ CGLVKNL + +S PI L GME L D + +VFV+G W
Sbjct: 527 TPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVW 586
Query: 570 IGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---- 625
GV ++ + LR RR+ ++ +V + RD + E++IF DAGR+ RPL +VE+
Sbjct: 587 HGVHRNPARLMETLRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESL 646
Query: 626 -----------MGKIKSLEGKN----------YTFQALLDHGIIELVGTEEEEDCCTAWG 664
+ K+ + E ++ YT+ +LL+ G++E + EEEE A
Sbjct: 647 GHKELKVRKGHIAKLMATEYQDIEGGFEDVEEYTWSSLLNEGLVEYIDAEEEESILIAMQ 706
Query: 665 IKYLLK---------DIEDKKPIK-------FTHCELDMSFLLGLSCGIIPFANHDHARR 708
+ L D++ K I+ FTHCE+ S +LG++ IIPF +H+ + R
Sbjct: 707 PEDLEPAEANEENDLDVDPAKRIRVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPR 766
Query: 709 VLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPR 768
YQS QA+G TN ++R+DT+++ L+YPQ+PL T + L
Sbjct: 767 NTYQS-AMGKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRAME-----------YLKF 814
Query: 769 PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRS 828
EL GQNAIVA+ + GYNQEDS++MN++S++RG+FRS RSY + M + +
Sbjct: 815 RELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITE-T 873
Query: 829 SDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA---------------DS 873
+ ++ K G D LDDDG G + D++IGK S
Sbjct: 874 FEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPISPDEEELGQRTAYHS 933
Query: 874 GADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
D S L+ TE G+V +V++++N DG F V +R + P +GDKF+S HGQKG +G
Sbjct: 934 KRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGIT 993
Query: 934 ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
+E+ PFT +GIVPD++INPHA PSR T L+E L K +AAL SG + A+PF
Sbjct: 994 YRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSK-VAAL-----SGNEGDASPF 1047
Query: 994 ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
+V+ I++ L G+ G E +Y+G TG+ + + IF GPT+YQRL HM +DK+ R
Sbjct: 1048 TDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARA 1107
Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
GP+ LTRQPV R R GG++FGEMERDC+IAHGAA+ L ERL SD++++HIC C
Sbjct: 1108 RGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGIC- 1166
Query: 1114 NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
+ VI ++ + C+ CD+ DI + ++PY AKLL QEL +M IT + T+
Sbjct: 1167 GLMTVIAKLNHNQFE-----CKGCDNKIDIYQIHIPYAAKLLFQELMAMNITPRLYTD 1219
>sp|Q8SR75|RPB2_ENCCU DNA-directed RNA polymerase II subunit RPB2 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPB2 PE=3 SV=1
Length = 1141
Score = 636 bits (1640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/1198 (34%), Positives = 626/1198 (52%), Gaps = 131/1198 (10%)
Query: 32 SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
SFF + GLV Q++S+++F+K +Q+ + IV+ P+ E + R A +RFGQ+
Sbjct: 16 SFFEQKGLVRQQLDSFDQFVKTKMQEVINESPVIIVQSA--PTAGIETQKRIA-VRFGQI 72
Query: 92 TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
+ KP + + G +FP AR++++TY+S + + V + ++ V DK K R
Sbjct: 73 YVSKPPVYTESDGRTITVFPNEARIRDLTYASPLFIDVTKETLSELGVV-DKHKYSR--- 128
Query: 152 IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
+ G +PVM++S C + G ++ G+C +D GGYFI+ G+EKV
Sbjct: 129 ------------VPFGSLPVMLRSSYCVLYGLGDKDLIDLGECPYDQGGYFIVNGSEKVI 176
Query: 206 VAQEQICLKRLWV---SNSMGWT-------VAYKSENKRNRLIVRLVDMSKFEDIKGGEK 255
VAQE++ ++V + +T V KS + L ++L G
Sbjct: 177 VAQERMASNTVYVFKKAQPATYTHYAEIRSVPEKSSRNPSTLSMKLCR-------SPGVI 229
Query: 256 VLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFR 315
+S+ + ++P+++L+ ALG SDKEI++ I + +D + +L SI + D+
Sbjct: 230 RVSLPLVKQDVPLFVLYRALGFLSDKEIIDHILYE-DDEEMFELLKESIEEGTVVQDQ-- 286
Query: 316 KGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLHGTKQ-----KARFLGY 363
AL Y+ K + P G E + + + P + GT++ KA F+GY
Sbjct: 287 --NVALDYIGK----RSAPIGTPQEKRIVMAKDLLAKEVLPHI-GTQEFCETKKAYFIGY 339
Query: 364 MVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDR 423
+V+ LL GRR D+RD + KR++L+G LL + + +Q+ + R
Sbjct: 340 IVQRLLLVALGRRNPDDRDHYGKKRMDLSGPLLASLFRTLFKKLCVDTTRHMQKCIENGR 399
Query: 424 TVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTR 483
I L ASI+T G A +TG W K + +G+ L R N + TL LRR
Sbjct: 400 EFN-IALGLKASIITQGFRYALATGNWGDQAKAMQTRAGVAQVLNRYNFVSTLSHLRRVN 458
Query: 484 QQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLF 542
++ GK+ R H +HWG +C TP+G+ CGLVKNL + +S S P+ E L
Sbjct: 459 TPIEKEGKLAAPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMAYISVGSSSGPLVEFLE 518
Query: 543 NSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDE 602
G+E L + ++ L K+FV+G W+G+ D + + L+ RR E+ +V I RD
Sbjct: 519 ECGVESLEEISTSQLDAATKIFVNGVWVGIHSDPVGLIKSLKLLRRSLEMDKEVSIVRDI 578
Query: 603 LQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLDHGIIELVGTEEE 656
+ E+R+ DAGR RPLLVV++ I+ L+ + L+ G IE + EEE
Sbjct: 579 REKEIRVQSDAGRPCRPLLVVKDNKLVITAEDIRKLKRGEIKWDNLVTSGFIEFLDVEEE 638
Query: 657 EDCCTAWGIKYLLKDIEDKK--PIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQ 714
E A K L + + + +THCE+ + +LG+ IPF +H+ + R YQS
Sbjct: 639 EMSMIAMNTKILADESRNSSDVSVSYTHCEIHPALILGICASTIPFPDHNQSPRNTYQS- 697
Query: 715 KHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNG 774
QA+G TN +R+DTLS+ LFYPQ+PL T L EL +G
Sbjct: 698 AMGKQAMGIYATNFLLRMDTLSNILFYPQKPLVTT-----------KSMEYLRFKELPSG 746
Query: 775 QNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAE-------VDNKEMQVKRR 827
QNA+VA+ + GYNQEDS++MN+++++RG+FRS R+Y + V+ + + R
Sbjct: 747 QNALVAIACYSGYNQEDSIIMNQSAIDRGLFRSFFYRTYTDQESMSRPGVNEEFCKPSRG 806
Query: 828 SSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYAD--------------S 873
+ M N + LDDDG G + D++IGK
Sbjct: 807 AVLRMKNLN--------YNKLDDDGLISPGTRVTGDDVLIGKITPILDPERSTKEAPVYV 858
Query: 874 GADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
D S ++ TE G+V V+++ N DG FS V +R R P +GDKF+S H QKG +G
Sbjct: 859 YKDSSTAMRRTETGIVDTVIVT-NKDGYKFSKVKVRSGRIPQMGDKFASRHAQKGTIGIT 917
Query: 934 ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
QE+ PFT +GIVPDI+INPHA PSR T G L+E LGK ++A+ SG + ATPF
Sbjct: 918 LRQEDMPFTSEGIVPDIIINPHAIPSRMTIGHLIECLLGK-VSAM-----SGEEGDATPF 971
Query: 994 ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
+ +VD I+ +L GF + G E +Y+G TG +R+ +F GPT+YQRL HM +DK+ R
Sbjct: 972 SGVTVDGISSRLKSYGFQQRGLEVMYNGMTGRKLRAQMFFGPTYYQRLKHMVDDKIHARA 1031
Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
GP+ LTRQPV R R GG++FGEMERDC+I+HGA+A L ERL +SD+Y ++C C
Sbjct: 1032 RGPLQILTRQPVEGRSRDGGLRFGEMERDCIISHGASAFLKERLMDVSDAYSCYVCDFCG 1091
Query: 1114 NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
+A GG KV C+ C++ ++ +PY KLL QEL M I + E
Sbjct: 1092 LLAM-------GGSKVN--ECKGCNNTTNVSMVEIPYAFKLLIQELMGMNIAPRIRFE 1140
>sp|Q02061|RPB2_SCHPO DNA-directed RNA polymerase II subunit RPB2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb2 PE=1 SV=2
Length = 1210
Score = 634 bits (1634), Expect = e-180, Method: Compositional matrix adjust.
Identities = 429/1240 (34%), Positives = 641/1240 (51%), Gaps = 127/1240 (10%)
Query: 18 GEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKG 77
E + C SFF E L Q+ S++EF++N +Q+ D T+ Y
Sbjct: 9 NETLTQEDCWTVISSFFEETSLARQQLFSFDEFVQNTMQEIVDD-DSTLTLDQYAQHTGA 67
Query: 78 EGE-WRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQ 136
+G+ R + FGQ+ L +P+ +G MFP+ ARL+N+TYSS + V ++ +V
Sbjct: 68 QGDVTRRYEINFGQIYLSRPTMTEADGSTT-TMFPQEARLRNLTYSSPLYVDMRKKVM-- 124
Query: 137 KRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCDF 190
V +D E+ E +E + + IG+IP+M++S C + GV + +C +
Sbjct: 125 --VAADSNVPIGEEEWLVEEEDEEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECPY 182
Query: 191 DHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSMGWTVAYKSE-----NKRNRLI--VRLV 242
D GGYFII G+EKV +AQE+ + V + +AY +E + +RLI +++
Sbjct: 183 DQGGYFIINGSEKVIIAQERSAANIVQVFKKAAPSPIAYVAEIRSALERGSRLISSMQIK 242
Query: 243 DMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFA 302
M++ + G ++ ++ ++IPI I+F ALGV D++I+ I + D +L ++
Sbjct: 243 LMARNTENSGQTIRATLPYIRSDIPIVIVFRALGVVPDRDILEHICYDPNDFQMLEMMKP 302
Query: 303 SIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSLHGTK 355
I +A D+ AL Y+ K +G+T G + E + + L P + +
Sbjct: 303 CIEEAFVIQDK----DIALDYIGK--RGST--TGVTREKRLRYAHDILQKELLPHITTME 354
Query: 356 ----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRM 411
+KA FLGYM+ +L RR+ D+RD F KRL+LAG LL ++ + +
Sbjct: 355 GFETRKAFFLGYMIHRMLLCALERREPDDRDHFGKKRLDLAGPLLASLFRMLFRKMTRDV 414
Query: 412 AKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRAN 471
K +Q+ + +R + + ++I+TNGL + +TG W + G+ L R
Sbjct: 415 YKYMQKCVETNREFN-LTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYT 473
Query: 472 PLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST 531
TL LRRT + GK+ R H +HWG +C TP+G+ CGLVKNL + VS
Sbjct: 474 FASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSV 533
Query: 532 -SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRK 590
S PI E L G+E L D + KVFV+G W+GV +D LR RRR
Sbjct: 534 GSPSAPIIEFLEEWGLETLEDYNPSASPNATKVFVNGVWLGVHRDPAHLTETLRSLRRRL 593
Query: 591 ELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKI--------KSLEGKN 636
++ +V I RD + E+R+F DAGRI RPL +V+N G++ + +E K+
Sbjct: 594 DISAEVSIVRDIREKELRLFTDAGRICRPLFIVDNNPNSERRGELCIRKEHIQQLIEDKD 653
Query: 637 ---------YTFQALLDHGIIELVGTEEEEDCCTA---------------WGIKYLLKDI 672
+ + AL+ G+IE + EEEE A + +K L
Sbjct: 654 RYDIDPEQRFGWTALVSSGLIEYLDAEEEETVMIAMSPEDLEASRQMQAGYEVKEELDPA 713
Query: 673 EDKKPI------KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTT 726
+ KP +THCE+ + +LG+ IIPF +H+ + R YQS QA+G T
Sbjct: 714 QRVKPAPNPHVHAWTHCEIHPAMILGILASIIPFPDHNQSPRNTYQS-AMGKQAMGVYLT 772
Query: 727 NPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLG 786
N +R+DT+++ L+YPQ+PL T + L EL GQNAIVA+ + G
Sbjct: 773 NYQVRMDTMANILYYPQKPLATTRSME-----------YLKFRELPAGQNAIVAILCYSG 821
Query: 787 YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVD 846
YNQEDS++MN+AS++RG+FRS R+Y + M V + V ++ K G D
Sbjct: 822 YNQEDSIIMNQASIDRGLFRSIFYRTYTDQEKKIGMTVME-EFERPVRSTTLRMKHGTYD 880
Query: 847 SLDDDGFPFIGANLQSGDIVIGKYADSGADH---------------SIKLKHTERGMVQK 891
L+DDG G + DI+IGK A DH S L+ TE G+V +
Sbjct: 881 KLEDDGLIAPGTRVSGEDIIIGKTAPIPLDHEELGQRTQLHAKRDVSTPLRSTESGIVDQ 940
Query: 892 VVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIV 951
V++++N +G F V +R R P +GDKF+S HGQKG +G E+ PF+ QGIVPDI+
Sbjct: 941 VMVTTNQEGLKFVKVRMRSTRIPQIGDKFASRHGQKGTIGMTYRHEDMPFSAQGIVPDII 1000
Query: 952 INPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFS 1011
INPHA PSR T L+E L K ++AL SG + ATPF +V+A+++ L GF
Sbjct: 1001 INPHAIPSRMTVAHLVECQLSK-VSAL-----SGFEGDATPFTDVTVEAVSKLLRSHGFQ 1054
Query: 1012 KWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRF 1071
G E +Y G TG + + +F+GPT+YQRL H+ +DK+ R GPV LTRQPV R R
Sbjct: 1055 SRGFEVMYHGHTGRKLVAQVFLGPTYYQRLKHLVDDKIHARARGPVQILTRQPVEGRSRD 1114
Query: 1072 GGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRG 1131
GG++FGEMERDC I+HG ++ L ERLF SD+Y++ +C C +A K
Sbjct: 1115 GGLRFGEMERDCQISHGCSSVLRERLFDCSDAYRVIVCDICGLIAI-------ASYKKDS 1167
Query: 1132 PYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
CR C + + +PY AKLL QEL SM I + T+
Sbjct: 1168 YECRSCQNRTRFSQVYLPYAAKLLFQELMSMNIAPRLFTK 1207
>sp|Q54J75|RPB2_DICDI DNA-directed RNA polymerase II subunit rpb2 OS=Dictyostelium
discoideum GN=polr2b PE=3 SV=1
Length = 1170
Score = 633 bits (1633), Expect = e-180, Method: Compositional matrix adjust.
Identities = 421/1201 (35%), Positives = 632/1201 (52%), Gaps = 121/1201 (10%)
Query: 32 SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYA------S 85
++F E GLV Q++S++EFI+N +Q+ D + P S+ G+ + S
Sbjct: 29 AYFQEKGLVRQQLDSFDEFIQNTMQEIIDESPPITLRP---ESQHHPGQAVVSNNVSTFS 85
Query: 86 MRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFK 145
++FGQ+ L KP+ A G + P AR++N+TYS+ + V + V T + D+ +
Sbjct: 86 VKFGQIYLSKPT--AEIDGVSQQVTPNQARIRNLTYSAPLFVDITKTVMTGSKSKGDERR 143
Query: 146 TGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIK 199
T EVL I IG++P+M++S C + + G+C FD GGYFII
Sbjct: 144 T-------DEVLK----RIFIGKVPIMLRSQYCMLNEADDRDLTTMGECSFDQGGYFIIN 192
Query: 200 GAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGE 254
G+EKV +AQE++ ++V + + +S + + + + G
Sbjct: 193 GSEKVLIAQEKMNNNHVYVFKKSPPSKYSYVAEIRSCQETGSRPTSTMYLKMLHNTNKGP 252
Query: 255 KVL--SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCD 312
+ +V ++ ++P+ I+F ALG +DK+I+ I + +D +++++ S+ ++
Sbjct: 253 VGIKATVPYIKQDVPVIIVFRALGFVADKDILEHICYDFKDAQMMDLMRPSLEESF---- 308
Query: 313 EFRKGRNALKYVDKLIKGTTFPPGES----TEECMNTYLFPSLHGTK----QKARFLGYM 364
+ AL Y+ K +G+T E E + + P + + +KA + GY+
Sbjct: 309 VIQSQEVALDYLGK--RGSTMGTREQRIKFAREVLQKEMLPHVSVAEFYETKKAFYFGYI 366
Query: 365 VKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRT 424
LL A RR D+RD F NKRL+LAG LL + K + LQR + D+
Sbjct: 367 THRLLLASLERRPLDDRDHFANKRLDLAGPLLGTLFRQLFKKLTKDVRLYLQRCIDKDK- 425
Query: 425 VRPIEYYLDASI----LTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLR 480
E+ +++ +T+GL + +TG W K SG+ L R TL LR
Sbjct: 426 ----EFIASSAVKSKTITSGLKYSLATGNWGSS-KSGGTKSGVAQVLNRLTFASTLSHLR 480
Query: 481 RTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFE 539
R + GK+ R H +HWG +C TP+G+ CGLVKNL + +S S +PI E
Sbjct: 481 RLNTPIGREGKLAKPRQLHNTHWGIVCPSETPEGQACGLVKNLAMMSYISVGSASQPILE 540
Query: 540 QLFNSGMEKLADDASYS-LGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEI 598
L E L + + S + K+FV+G W+G+ +S LR RR ++ +V +
Sbjct: 541 FLEEWTTENLEEISDLSSIFSATKIFVNGMWVGIHHQPDKLLSTLRLLRRCGDVSVEVSV 600
Query: 599 KRDELQSEVRIFMDAGRILRPLLVVE-NMGKIKS------LEGKNYTFQALLDHGIIELV 651
RD + E+R++ D GR RPL VV+ N +IK + Y +Q LL GI+E +
Sbjct: 601 VRDIREKELRLYTDPGRCCRPLFVVQDNKVQIKKQHINKLINNDEYKWQDLLSEGIVEYI 660
Query: 652 GTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLY 711
EEEE A + L+ ++ +THCE+ S +LG+ C IIPF +H+ + R Y
Sbjct: 661 DAEEEETVLIAMTPEDLVPMPNEQIVHTYTHCEIHPSMILGICCSIIPFPDHNQSPRNTY 720
Query: 712 QSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPEL 771
Q+ QA+G TN +R+DT++H LFYPQ+PL T + Y H LP
Sbjct: 721 QA-AMGKQAMGVYITNYQLRMDTMAHVLFYPQKPLVTTRSME------YLHFRELP---- 769
Query: 772 YNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDD 831
GQN VA+ + GYNQEDS+++N+++++RG+FRS R+YK E Q K+ S +
Sbjct: 770 -AGQNVCVAIACYSGYNQEDSVILNQSAIDRGLFRSMFYRAYKDE------QKKQTSLME 822
Query: 832 MVNFGKIQS------KIGRVDSLDDDGFPFIGANLQSGDIVIGKYA-------DSGA--- 875
V F K + + G + +DDDG G + DI+IGK D G
Sbjct: 823 EV-FEKPERDTCAGMRHGSYEKIDDDGLVAPGVRVAGDDIIIGKTTPLPPSDDDLGPKTR 881
Query: 876 -----DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVL 930
D S L+ +E G+V +V+L+++ +G F V +R +R P +GDKFSS HGQKG
Sbjct: 882 RHTKRDSSTALRSSETGIVDQVILTTSGEGFKFCKVRVRSMRVPQIGDKFSSRHGQKGTC 941
Query: 931 GFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYA 990
G QE+ PFT++GIVPDI++NPHA PSR T GQL+E LGK A+ G + A
Sbjct: 942 GMAYRQEDLPFTVEGIVPDIIVNPHAIPSRMTIGQLIECLLGKVSASTGD------EGDA 995
Query: 991 TPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVK 1050
TPF +V+AI++ LH+ G+ G E +Y+G TG + + IFIGPT+YQRL HM +DK+
Sbjct: 996 TPFTDVTVEAISQALHKIGYQMTGHEVMYNGHTGRRMDAQIFIGPTYYQRLKHMVDDKIH 1055
Query: 1051 FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICR 1110
R+ GPV LTRQPV R R GG++FGEMERDC+I+HGAA L ERLF SDSY++HIC
Sbjct: 1056 SRSRGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGAAQFLKERLFDQSDSYRVHICD 1115
Query: 1111 KCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
C +A K CR C + I + +PY AKLL QEL SM I + T
Sbjct: 1116 ICGLIAI-------ANLKKNSFECRRCKNKTQISQIRMPYAAKLLFQELMSMSIAPRMFT 1168
Query: 1171 E 1171
+
Sbjct: 1169 Q 1169
>sp|Q6FLD5|RPB2_CANGA DNA-directed RNA polymerase II subunit RPB2 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL
Y-65) GN=RPB2 PE=3 SV=1
Length = 1223
Score = 633 bits (1632), Expect = e-180, Method: Compositional matrix adjust.
Identities = 421/1224 (34%), Positives = 634/1224 (51%), Gaps = 123/1224 (10%)
Query: 32 SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
+FF E GLVS Q++S+N+F+ LQ I+E + + + R + FG++
Sbjct: 34 AFFREKGLVSQQLDSFNQFVDYTLQDIISEDSTLILEQLAQHTTEQDNISRKYEISFGKI 93
Query: 92 TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
+ KP +G H ++P+ ARL+N+TYSS + V V + Y V GR+
Sbjct: 94 YVTKPMVNESDGV-THALYPQEARLRNLTYSSGLFVDVTKRTYEAVDVP------GRDLN 146
Query: 152 IQ----KEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD------CDFDHGGYFIIKGA 201
Q + E+ + IGR+P+M++S C++ + D C FD GGYFII G+
Sbjct: 147 YQLIAEESEEDSESGKVFIGRLPIMLRSKNCYLSDATESDLYKLKECPFDMGGYFIINGS 206
Query: 202 EKVFVAQEQICLKRLWVSNSMGWT-VAYKSE-----NKRNRLIVRL-VDMSKFEDIKGGE 254
EKV +AQE+ + V + +++ +E K +R I L V + E
Sbjct: 207 EKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGRESSSART 266
Query: 255 KVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEF 314
++ ++ +IPI I+F ALG+ D EI+ I + D +L +L + D D
Sbjct: 267 IKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFVIQDR- 325
Query: 315 RKGRNALKYVDKLIKGTTFPPGES-----TEECMNTYLFP---SLHG-TKQKARFLGYMV 365
AL ++ + +GT + ++ + P L G +KA FLGYM+
Sbjct: 326 ---ETALDFIGR--RGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMI 380
Query: 366 KCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTV 425
LL R+ D+RD F KRL+LAG LL + K K + + +QR +
Sbjct: 381 NRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTKDIFRYMQRTVEEANDF 440
Query: 426 RPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQ 485
++ ++A +T+GL A +TG W K +G+ L R TL LRRT
Sbjct: 441 N-MKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTP 499
Query: 486 VQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-LEPIFEQLFNS 544
+ GK+ R H +HWG +C TP+G+ CGLVKNL + +S PI L
Sbjct: 500 IGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGADPMPIITFLSEW 559
Query: 545 GMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQ 604
GME L D + +VFV+G W GV ++ + LR RR+ ++ +V + RD +
Sbjct: 560 GMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIRDIRE 619
Query: 605 SEVRIFMDAGRILRPLLVVEN---------------MGKIKSLE----------GKNYTF 639
E++IF DAGR+ RPL +VE+ + K+ + E ++YT+
Sbjct: 620 QELKIFTDAGRVYRPLFIVEDDEELGRKELKVRKGHVAKLMATEYQDIEGGFEDAEDYTW 679
Query: 640 QALLDHGIIELVGTEEEEDCCTAWGIKYL----------LKDIEDKKPIK-------FTH 682
+LL+ G++E + EEEE A + L ++++ K IK FTH
Sbjct: 680 SSLLNEGLVEYIDAEEEESILIAMQPEDLEPTAVEQDIPKENVDLAKRIKVTHHATTFTH 739
Query: 683 CELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYP 742
CE+ S +LG++ IIPF +H+ + R YQS QA+G TN + R+DT+++ L+YP
Sbjct: 740 CEIHPSMILGVAASIIPFPDHNQSPRNTYQS-AMGKQAMGVFLTNYNFRMDTMANILYYP 798
Query: 743 QRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLER 802
Q+PL T + L EL GQNAIVA+ + GYNQEDS++MN++S++R
Sbjct: 799 QKPLGTTRAME-----------YLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDR 847
Query: 803 GMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQS 862
G+FRS RSY + M + + + ++ K G D LD+DG G +
Sbjct: 848 GLFRSLFFRSYMDQEKKYGMSITE-TFEKPQRTNTLRMKHGTYDKLDEDGLIAPGVRVSG 906
Query: 863 GDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVS 907
DI+IGK S D S L+ TE G+V +V++++N DG F V
Sbjct: 907 EDIIIGKTTPIAPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQDGLKFVKVR 966
Query: 908 LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLL 967
+R + P +GDKF+S HGQKG +G +E+ PFT +GIVPD++INPHA PSR T L+
Sbjct: 967 VRTTKVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLI 1026
Query: 968 EAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMV 1027
E L K +AAL SG + A+PF +V+ I++ L G+ G E +Y+G TG+ +
Sbjct: 1027 ECLLSK-VAAL-----SGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKL 1080
Query: 1028 RSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAH 1087
+ IF GPT+YQRL HM +DK+ R GP+ LTRQPV R R GG++FGEMERDC+IAH
Sbjct: 1081 MAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAH 1140
Query: 1088 GAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKAN 1147
GAAA L ERL SD++++HIC C + +VI ++ + C+ CD+ DI + +
Sbjct: 1141 GAAAFLKERLMEASDAFRVHICGIC-GLMSVIAKLNHNQFE-----CKGCDNKIDIYQIH 1194
Query: 1148 VPYGAKLLCQELFSMGITLKFDTE 1171
+PY AKLL QEL +M IT + T+
Sbjct: 1195 IPYAAKLLFQELMAMNITPRLYTD 1218
>sp|A5DHT2|RPB2_PICGU DNA-directed RNA polymerase II subunit RPB2 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
JCM 1539 / NBRC 10279 / NRRL Y-324) GN=RPB2 PE=3 SV=3
Length = 1236
Score = 630 bits (1624), Expect = e-179, Method: Compositional matrix adjust.
Identities = 419/1263 (33%), Positives = 649/1263 (51%), Gaps = 140/1263 (11%)
Query: 9 TDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVE 68
+DP D C SFF E GLVS Q++S++EFI++ +Q+ I++
Sbjct: 6 SDPYMYDDDSSSITPEDCWTVISSFFQEKGLVSQQLDSFDEFIESTIQELVWEDSRLILD 65
Query: 69 PGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVK 128
+ + + E R + FG++ + KP+ G+G H MFP+ ARL+N+TYSS + V
Sbjct: 66 QPAQHTSEEDHENRRYEITFGKIYISKPTQTEGDGTT-HPMFPQEARLRNLTYSSPLYVD 124
Query: 129 VQFQVYTQKRVTSDKFKTGREQYIQKEVLSDE--TTNIIIGRIPVMVKSDLCWMKGV--- 183
+ +V + D E +E + DE +T + +G++P+M++S C ++ +
Sbjct: 125 MTKRVLK----SDDNAGNEHELEWIEEEIKDEEPSTKVYLGKVPIMLRSKFCMLRDLGEH 180
Query: 184 ---EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-----SNSMGWTVAYKSENKR- 234
E +C +D GGYF+I G+EKV +AQE+ + V + + +S +R
Sbjct: 181 EFYELKECPYDMGGYFVINGSEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSALERG 240
Query: 235 NRLIVRL-VDMSKFEDIKGGEKVL--SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTC 291
+RLI + + + E+ + + ++ ++ +IPI I+F ALG+ D +I+ I +
Sbjct: 241 SRLISSMQIKLYGREEKSTSNRTIKATLPYIKEDIPIVIVFRALGIVPDGDILEHICYDA 300
Query: 292 EDCSILNILFAS------IHDADNKCDEF-RKGRNALKYVDKLIKGTTFPPGESTEECMN 344
D +L +L I + + D R+G +K ++ + ++ +
Sbjct: 301 NDWQMLEMLKPCVEEGFVIQEREVALDFIGRRGALGIKREKRI---------QYAKDILQ 351
Query: 345 TYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLEREL 400
L P++ + +KA FLGYMV LL R++ D+RD F KRL+LAG LL
Sbjct: 352 KELLPNITQDEGFETRKAFFLGYMVNRLLLCALERKEPDDRDHFGKKRLDLAGPLLASLF 411
Query: 401 KVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERI 460
++ K + +QR + D+ + + + +T+GL + +TG W K
Sbjct: 412 RILFKKLTKDIYNYMQRCVENDKVFN-LTLAVKSQTITDGLRYSLATGNWGEQKKAMSSR 470
Query: 461 SGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLV 520
+G+ L R TL LRRT + GK+ R H +HWG +C TP+G+ CGLV
Sbjct: 471 AGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQACGLV 530
Query: 521 KNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSF 579
KNL + +S + EPI L GME L D + +VFV+G W+G ++
Sbjct: 531 KNLSLMSCISVGTPSEPILYFLEEWGMEPLEDYVPSNSPDSTRVFVNGVWVGTHREPAHL 590
Query: 580 VSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVV------ENMGKIK--- 630
V +R RRR ++ +V I RD + E +IF DAGR+ RPL +V E G++K
Sbjct: 591 VDTMRSLRRRGDISPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDPESETKGELKLQK 650
Query: 631 --------------------SLEGKNYTFQALLDHGIIELVGTEEEE------------- 657
E Y + +L++ G++E V EEEE
Sbjct: 651 EHIHKLLNAEYSEEYATNEFGEEEGPYGWSSLVNDGVVEYVDAEEEETIMIAMTPEDLEA 710
Query: 658 --DCCTAWGIKYLLKDIEDKKPIK------------FTHCELDMSFLLGLSCGIIPFANH 703
TA K L + ++ P K FTHCE+ S +LG++ IIPF +H
Sbjct: 711 SKSSLTATQQKSLQLEEQELDPAKRIKPTNSSTTSTFTHCEIHPSMILGVAASIIPFPDH 770
Query: 704 DHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHN 763
+ + R YQS QA+G TN S+R+DT+++ L+YPQ+PL T
Sbjct: 771 NQSPRNTYQS-AMGKQAMGVFLTNYSVRMDTMANILYYPQKPLATTR----------AME 819
Query: 764 HILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQ 823
H+ R EL GQNAIVA+ + GYNQEDS++MN++S++RG+FRS R+Y +++ ++
Sbjct: 820 HLKFR-ELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRTY-MDLEKRQGM 877
Query: 824 VKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA------------ 871
+ + ++ K G + LDDDG G + DI+IGK
Sbjct: 878 KALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGIRVSGEDIIIGKTTPIPPDTEELGQR 937
Query: 872 ---DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKG 928
+ D S L+ TE G+V +V+L++N DG F V +R + P +GDKF+S HGQKG
Sbjct: 938 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKG 997
Query: 929 VLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKR 988
+G E+ PFT QGIVPD++INPHA PSR T L+E L K +++L SGL+
Sbjct: 998 TVGVTYRHEDMPFTSQGIVPDLIINPHAIPSRMTVAHLIECLLSK-VSSL-----SGLEG 1051
Query: 989 YATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDK 1048
A+PF + +A+++ L G+ G E +Y G TG+ + + +F GPT+YQRL HM +DK
Sbjct: 1052 DASPFTDVTAEAVSKLLREHGYQSRGFEVMYHGHTGKKLMAQVFFGPTYYQRLRHMVDDK 1111
Query: 1049 VKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHI 1108
+ R GPV LTRQPV R R GG++FGEMERDC+IAHGAA L ERL SD++++H+
Sbjct: 1112 IHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERLMEASDAFRVHV 1171
Query: 1109 CRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
C C + V+ +K + CR C + +I + ++PY AKLL QEL +M I+ +
Sbjct: 1172 CGVCG-----LMSVIANLKKNQFE-CRSCKNKTNIYQIHIPYAAKLLFQELMAMNISPRL 1225
Query: 1169 DTE 1171
TE
Sbjct: 1226 YTE 1228
>sp|P30876|RPB2_HUMAN DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens GN=POLR2B
PE=1 SV=1
Length = 1174
Score = 621 bits (1601), Expect = e-176, Method: Compositional matrix adjust.
Identities = 429/1241 (34%), Positives = 624/1241 (50%), Gaps = 160/1241 (12%)
Query: 2 DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-D 60
D DD+ T DL +E C S+F+E GLV Q++S++EFI+ +Q+ D
Sbjct: 11 DEDDDEITP-----DLWQEA----CWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61
Query: 61 SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
+ + S + E RY ++F Q+ L KP+ + +G M P ARL+N+T
Sbjct: 62 APPIDLQAEAQHASGEVEEPPRYL-LKFEQIYLSKPTHWERDGAPS-PMMPNEARLRNLT 119
Query: 121 YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
YS+ + V + T K G EQ L + IG+IP+M++S C +
Sbjct: 120 YSAPLYVDI----------TKTVIKEGEEQ------LQTQHQKTFIGKIPIMLRSTYCLL 163
Query: 181 KGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR 234
G+ E +C D GGYFII G+EKV +AQE++ ++V AY E +
Sbjct: 164 NGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRS 223
Query: 235 N-------------RLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDK 281
++ R +K I G V ++ ++ E+PI I+F ALG SD+
Sbjct: 224 CLENSSRPTSTIWVSMLARGGQGAKKSAI-GQRIVATLPYIKQEVPIIIVFRALGFVSDR 282
Query: 282 EIVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKL 327
+I+ I + ED ++ ++ S+ +A N F R A +KY ++
Sbjct: 283 DILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEV 342
Query: 328 IKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNK 387
++ P ++ C +KA FLGYMV LL A GRR+ D+RD + NK
Sbjct: 343 LQKEMLPHVGVSDFC-----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNK 391
Query: 388 RLELAGELLERELKVHIAHARKRMAKALQRD--LYGDRTVR-----PIEYYLDASILTNG 440
RL+LAG LL A + M K L ++ +Y + + +E + I+++G
Sbjct: 392 RLDLAGPLL--------AFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDG 443
Query: 441 LSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHP 500
L + +TG W K + +G+ L R TL LRR + GK+ R H
Sbjct: 444 LKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHN 503
Query: 501 SHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGG 559
+ WG +C TP+G GLVKNL + +S S PI E L ME L + + ++
Sbjct: 504 TLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIAD 563
Query: 560 KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILR 618
K+FV+G W+G+ KD ++ LR+ RR+ ++ ++V + RD + E+RI+ DAGRI R
Sbjct: 564 ATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICR 623
Query: 619 PLLVVE---------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLL 669
PLL+VE ++ ++K E NY++Q L+ G++E + T EEE A
Sbjct: 624 PLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD--- 680
Query: 670 KDIEDKKPI---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTT 726
D+++K+ +THCE+ S +LG+ IIPF +H+ + R YQS QA+G T
Sbjct: 681 -DLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYIT 738
Query: 727 NPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLG 786
N +R+DTL+H L+YPQ+PL T + L EL G N+IVA+ + G
Sbjct: 739 NFHVRMDTLAHVLYYPQKPLVTTRSME-----------YLRFRELPAGINSIVAIASYTG 787
Query: 787 YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGR-- 844
YNQEDS++MNR++++RG FRS RSYK Q ++ D F K + +
Sbjct: 788 YNQEDSVIMNRSAVDRGFFRSVFYRSYKE-------QESKKGFDQEEVFEKPTRETCQGM 840
Query: 845 ----VDSLDDDGFPFIGANLQSGDIVIGKYAD---------------SGADHSIKLKHTE 885
D LDDDG G + D++IGK + D S L+ +E
Sbjct: 841 RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE 900
Query: 886 RGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQG 945
G+V +V+++ N +G F + +R VR P +GDKF+S HGQKG G QE+ PFT +G
Sbjct: 901 TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG 960
Query: 946 IVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQ 1004
I PDI+INPHA PSR T G L+E GK + KG ATPF +V I+
Sbjct: 961 ITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGEIGD----ATPFNDAVNVQKISNL 1014
Query: 1005 LHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQP 1064
L G+ G E LY+G TG + S IFIGPT+YQRL HM +DK+ R GP+ L RQP
Sbjct: 1015 LSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQP 1074
Query: 1065 VADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVG 1124
+ R R GG++FGEMERDC IAHGAA L ERLF SD YQ+H+C C +A
Sbjct: 1075 MEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAI------- 1127
Query: 1125 GGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
+ CR C + I +PY KLL QEL SM I
Sbjct: 1128 ANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIA 1168
>sp|Q8CFI7|RPB2_MOUSE DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus GN=Polr2b
PE=2 SV=2
Length = 1174
Score = 619 bits (1596), Expect = e-176, Method: Compositional matrix adjust.
Identities = 428/1241 (34%), Positives = 624/1241 (50%), Gaps = 160/1241 (12%)
Query: 2 DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-D 60
D DD+ T DL +E C S+F+E GLV Q++S++EFI+ +Q+ D
Sbjct: 11 DEDDDEITP-----DLWQEA----CWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVED 61
Query: 61 SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
+ + S + E RY ++F Q+ L KP+ + +G M P ARL+N+T
Sbjct: 62 APPIDLQAEAQHASGEVEEPPRYL-LKFEQIYLSKPTHWERDGAPS-PMMPNEARLRNLT 119
Query: 121 YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
YS+ + V + T K G EQ L + IG+IP+M++S C +
Sbjct: 120 YSAPLYVDI----------TKTVIKEGEEQ------LQTQHQKTFIGKIPIMLRSTYCLL 163
Query: 181 KGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR 234
G+ E +C D GGYFII G+EKV +AQE++ ++V AY E +
Sbjct: 164 NGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRS 223
Query: 235 N-------------RLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDK 281
++ R +K I G V ++ ++ E+PI I+F ALG SD+
Sbjct: 224 CLENSSRPTSTIWVSMLARGGQGAKKSAI-GQRIVATLPYIKQEVPIIIVFRALGFVSDR 282
Query: 282 EIVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKL 327
+I+ I + ED ++ ++ S+ +A N F R A +KY ++
Sbjct: 283 DILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEV 342
Query: 328 IKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNK 387
++ P ++ C +KA FLGYMV LL A GRR+ D+RD + NK
Sbjct: 343 LQKEMLPHVGVSDFC-----------ETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNK 391
Query: 388 RLELAGELLERELKVHIAHARKRMAKALQRD--LYGDRTVR-----PIEYYLDASILTNG 440
RL+LAG LL A + M K L ++ +Y + + +E + I+++G
Sbjct: 392 RLDLAGPLL--------AFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDG 443
Query: 441 LSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHP 500
L + +TG W K + +G+ L R TL LRR + GK+ R H
Sbjct: 444 LKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHN 503
Query: 501 SHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGG 559
+ WG +C TP+G GLVKNL + +S S PI E L ME L + + ++
Sbjct: 504 TLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIAD 563
Query: 560 KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILR 618
K+FV+G W+G+ KD ++ LR+ RR+ ++ ++V + RD + E+RI+ DAGRI R
Sbjct: 564 ATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICR 623
Query: 619 PLLVVE---------NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLL 669
PLL+VE ++ ++K E NY++Q L+ G++E + T EEE A
Sbjct: 624 PLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPD--- 680
Query: 670 KDIEDKKPI---KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTT 726
D+++K+ +THCE+ S +LG+ IIPF +H+ + R YQS QA+G T
Sbjct: 681 -DLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYIT 738
Query: 727 NPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLG 786
N +R+DTL+H L+YPQ+PL T + L EL G N+IVA+ + G
Sbjct: 739 NFHVRMDTLAHVLYYPQKPLVTTRSME-----------YLRFRELPAGINSIVAIASYTG 787
Query: 787 YNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGR-- 844
YNQEDS++MNR++++RG FRS RSYK Q ++ D F K + +
Sbjct: 788 YNQEDSVIMNRSAVDRGFFRSVFYRSYKE-------QESKKGFDQEEVFEKPTRETCQGM 840
Query: 845 ----VDSLDDDGFPFIGANLQSGDIVIGKYAD---------------SGADHSIKLKHTE 885
+ LDDDG G + D++IGK + D S L+ +E
Sbjct: 841 RHAIYEKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE 900
Query: 886 RGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQG 945
G+V +V+++ N +G F + +R VR P +GDKF+S HGQKG G QE+ PFT +G
Sbjct: 901 TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG 960
Query: 946 IVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP-SVDAITEQ 1004
I PDI+INPHA PSR T G L+E GK + KG ATPF +V I+
Sbjct: 961 ITPDIIINPHAIPSRMTIGHLIECLQGK--VSANKGEIGD----ATPFNDAVNVQKISNL 1014
Query: 1005 LHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQP 1064
L G+ G E LY+G TG + S IFIGPT+YQRL HM +DK+ R GP+ L RQP
Sbjct: 1015 LSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQP 1074
Query: 1065 VADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVG 1124
+ R R GG++FGEMERDC IAHGAA L ERLF SD YQ+H+C C +A
Sbjct: 1075 MEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAI------- 1127
Query: 1125 GGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165
+ CR C + I +PY KLL QEL SM I
Sbjct: 1128 ANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIA 1168
>sp|P08266|RPB2_DROME DNA-directed RNA polymerase II subunit RPB2 OS=Drosophila
melanogaster GN=RpII140 PE=2 SV=2
Length = 1176
Score = 617 bits (1592), Expect = e-175, Method: Compositional matrix adjust.
Identities = 415/1221 (33%), Positives = 626/1221 (51%), Gaps = 134/1221 (10%)
Query: 17 LGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-DSFGETIVEPGYDPSK 75
+ E + C ++F+E GLV Q++S++EFI+ +Q+ DS + S
Sbjct: 18 ISHELWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSG 77
Query: 76 KGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYT 135
+ E R+ S++F Q+ L KP+ + +G M P ARL+N+TYS+ + V + T
Sbjct: 78 EVETPPRF-SLKFEQIYLSKPTHWEKDGSPS-PMMPNEARLRNLTYSAPLYVDI---TKT 132
Query: 136 QKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGV------EKGDCD 189
+ D +T ++ IG+IP+M++S C + + E +C
Sbjct: 133 KNVEGLDPVETQHQK-------------TFIGKIPIMLRSTYCLLSQLTDRDLTELNECP 179
Query: 190 FDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKR---------NRLIVR 240
D GGYFII G+EKV +AQE++ ++V + A+K+E + + L V
Sbjct: 180 LDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVN 239
Query: 241 LVDMSKFEDIKG---GEKVLSVY-FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSI 296
++ ++IK G++++++ ++ EIPI I+F ALG +D++I+ I + +D +
Sbjct: 240 MMARGS-QNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEM 298
Query: 297 LNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLIKGTTFPPGESTEEC 342
+ ++ S+ +A N F R A +KY ++++ P ++ C
Sbjct: 299 MEMVKPSLDEAFVVQEQNVALNFIGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFC 358
Query: 343 MNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKV 402
+KA FLGYMV LL A GRR+ D+RD + NKRL+LAG LL +
Sbjct: 359 -----------ETKKAYFLGYMVHRLLLASLGRRELDDRDHYGNKRLDLAGPLLAFLFRG 407
Query: 403 HIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISG 462
+ K + Q+ + + +E + +I+T+GL + +TG W K + +G
Sbjct: 408 LFKNLMKEVRMYTQKFIDRGKDFN-LELAIKTNIITDGLRYSLATGNWGDQKKAHQARAG 466
Query: 463 IVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKN 522
+ L R TL LRR + GK+ R H + WG +C TP+G GLVKN
Sbjct: 467 VSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKN 526
Query: 523 LGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVS 581
L + +S S PI E L ME L + A ++ K+FV+G W+G+ +D ++
Sbjct: 527 LALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMA 586
Query: 582 ELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN---------MGKIKS 631
LR+ RR+ ++ ++V + RD E+RI+ DAGRI RPLL+VEN + +K
Sbjct: 587 TLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKE 646
Query: 632 LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLL 691
+ NY++Q L+ G++E + T EEE A L +D + +THCE+ + +L
Sbjct: 647 RDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMIL 706
Query: 692 GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
G+ IIPF +H+ + R YQS QA+G TN +R+DTL+H L+YP +PL T
Sbjct: 707 GVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRS 765
Query: 752 SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
+ L EL G N+IVA+ + GYNQEDS+++N +++ERG FRS R
Sbjct: 766 ME-----------YLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYR 814
Query: 812 SYKAEVDNKEMQVKRRSSDDMVNFGKIQS------KIGRVDSLDDDGFPFIGANLQSGDI 865
SYK + +NK R D NF K + D LDDDG G + D+
Sbjct: 815 SYK-DSENK------RVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDV 867
Query: 866 VIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQ 910
VIGK S D S L+++E G+V +V+L+ N +G F + +R
Sbjct: 868 VIGKTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRS 927
Query: 911 VRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAA 970
VR P +GDKF+S HGQKG G QE+ FT +G+ PDI+INPHA PSR T G L+E
Sbjct: 928 VRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECL 987
Query: 971 LGKGIAALGKGICSGLKRYATPFATP-SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRS 1029
GK LG G ATPF +V I+ L G+ G E +Y+G TG + +
Sbjct: 988 QGK----LGSN--KGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINA 1041
Query: 1030 LIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA 1089
+F+GPT+YQRL HM +DK+ R GPV L RQP+ R R GG++FGEMERDC I+HGA
Sbjct: 1042 QVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGA 1101
Query: 1090 AANLHERLFTLSDSYQMHICRKCK--NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKAN 1147
A L ERLF +SD Y++HIC C +AN+ C+ C + I +
Sbjct: 1102 AQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFE---------CKGCKNKTQISQVR 1152
Query: 1148 VPYGAKLLCQELFSMGITLKF 1168
+PY AKLL QEL SM I +
Sbjct: 1153 LPYAAKLLFQELMSMNIAPRL 1173
>sp|Q10578|RPB2_CAEEL DNA-directed RNA polymerase II subunit RPB2 OS=Caenorhabditis elegans
GN=rpb-2 PE=2 SV=2
Length = 1193
Score = 612 bits (1578), Expect = e-174, Method: Compositional matrix adjust.
Identities = 406/1233 (32%), Positives = 627/1233 (50%), Gaps = 132/1233 (10%)
Query: 2 DSDDNGFTDPTSLCDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAF-D 60
D D + D + ++ E + C ++F+E GLV Q++S++EF++ +Q+ D
Sbjct: 11 DPMDGDYIDDSD--EISAEAWQEACWVVISAYFDEKGLVRQQLDSFDEFVQMNVQRIVED 68
Query: 61 SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMT 120
S + E ++ S++F Q+ L KP+ + +G M P ARL+N+T
Sbjct: 69 SPPVELQSENQHLGTDMENPAKF-SLKFNQIYLSKPTHWEKDGA-PMPMMPNEARLRNLT 126
Query: 121 YSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM 180
Y+S + V + K VT D T E + D+ + +G++PVM++S C +
Sbjct: 127 YASPLYVDIT------KVVTRDDSAT--------EKVYDK---VFVGKVPVMLRSSYCML 169
Query: 181 KGV------EKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSE--- 231
+ E +C D GGYF+I G+EKV +AQE++ ++V + A+K+E
Sbjct: 170 SNMTDRDLTELNECPLDPGGYFVINGSEKVLIAQEKMATNTVYVFSMKDGKYAFKTECRS 229
Query: 232 ---NKRNRLIVRLVDM-----SKFEDIKGGEKVLSVY-FLSTEIPIWILFFALGVSSDKE 282
N V+M + G++++ + ++ EIPI I+F ALG SD++
Sbjct: 230 CLENSSRPTSTMWVNMLARGGGGGKKTAMGQRIIGILPYIKQEIPIMIVFRALGFVSDRD 289
Query: 283 IVNLIDFTCEDCSILNILFASIHDA-----DNKCDEFRKGRNA---------LKYVDKLI 328
I+ I + D ++ ++ S+ +A N F R A +KY +++
Sbjct: 290 ILGHIIYDFNDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGAKPGVTREQRIKYAREIL 349
Query: 329 KGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKR 388
+ P +E C +KA F+GYMV LL A GRR+ D+RD NKR
Sbjct: 350 QKELLPHVGVSEHC-----------ETKKAFFIGYMVHRLLLAALGRRELDDRDHIGNKR 398
Query: 389 LELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTG 448
L+LAG LL + + K M Q+ + + ++ + S +T GL+ + +TG
Sbjct: 399 LDLAGPLLAFLFRSLFRNLLKEMRMTAQKYINKNDDF-ALDVCVKTSTITRGLTYSLATG 457
Query: 449 AWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICF 508
W K + +G+ L R TL LRR + GK+ R H + WG +C
Sbjct: 458 NWGDQKKAHQSRAGVSQVLNRLTYTATLSHLRRANSPIGREGKLAKPRQLHNTQWGMVCP 517
Query: 509 LSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDG 567
TP+G+ GLVKNL + +S S+ EPI E L ME L + + ++ K+FV+G
Sbjct: 518 AETPEGQAVGLVKNLALMAYISVGSLPEPILEFLEEWSMENLEEVSPSAIADATKIFVNG 577
Query: 568 DWIGVCKDSLSFVSELRRKRRRKEL-PTQVEIKRDELQSEVRIFMDAGRILRPLLVVENM 626
W+G+ ++ ++ L++ RR+ ++ ++V + RD E+RI+ DAGR+ RPLL+VEN
Sbjct: 578 AWVGIHREPDQLMTTLKKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVENQ 637
Query: 627 G-----------KIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDK 675
K + E YT+ L+ G++EL+ + EEE A + +D+
Sbjct: 638 KLALKKRHIDQLKEAADEANKYTWSDLVGGGVVELIDSMEEETSMIAM----MPEDLRSG 693
Query: 676 KPI-KFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDT 734
THCE+ + +LG+ IIPF +H+ + R YQS QA+G TTN +R+DT
Sbjct: 694 GYCDTHTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQS-AMGKQAMGVYTTNFHVRMDT 752
Query: 735 LSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLV 794
L+H L+YPQ+PL T + L EL G NAIVA+ + GYNQEDS++
Sbjct: 753 LAHVLYYPQKPLVTTRSME-----------YLRFNELPAGINAIVAILSYSGYNQEDSVI 801
Query: 795 MNRASLERGMFRSEHIRSYK---AEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDD 851
MN ++++RG+FRS RSY+ A +DN ++ + + + + + D LD+D
Sbjct: 802 MNNSAIDRGLFRSVFYRSYRDNEANLDNANEELIEKPTREKCS----GMRHSLYDKLDED 857
Query: 852 GFPFIGANLQSGDIVIGKYA-----DSGADHSIK----------LKHTERGMVQKVVLSS 896
G G + D++IGK D D S K L+ +E G+V +V+LS
Sbjct: 858 GIISPGMRVSGDDVIIGKTVALPDIDDDLDASGKKYPKRDASTFLRSSETGIVDQVMLSL 917
Query: 897 NDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHA 956
N DG F + +R VR P +GDKF+S HGQKG +G + QE+ PFT +G+ PDI+INPHA
Sbjct: 918 NSDGNKFVKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDIIINPHA 977
Query: 957 FPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFA-TPSVDAITEQLHRAGFSKWGT 1015
PSR T G L+E GK A G+ ATPF T +V I+ L G+ G
Sbjct: 978 VPSRMTIGHLIECLQGKLSANKGE------IGDATPFNDTVNVQKISGLLCEYGYHLRGN 1031
Query: 1016 ERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIK 1075
E +Y+G TG+ + + IF GPT+YQRL HM +DK+ R GP+ + RQP+ R R GG++
Sbjct: 1032 EVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIHSRARGPIQMMNRQPMEGRARDGGLR 1091
Query: 1076 FGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCR 1135
FGEMERDC I+HGA L ERLF +SD Y +++C C +V + C+
Sbjct: 1092 FGEMERDCQISHGATQFLRERLFEVSDPYHVYVCNNCG-------LIVVANLRTNSFECK 1144
Query: 1136 ICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
C + + +PY KLL QEL SM I +
Sbjct: 1145 ACRNKTQVSAVRIPYACKLLFQELMSMSIAPRL 1177
>sp|P11513|RPOB_SULAC DNA-directed RNA polymerase subunit B OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoB PE=3 SV=2
Length = 1126
Score = 518 bits (1333), Expect = e-145, Method: Compositional matrix adjust.
Identities = 391/1207 (32%), Positives = 585/1207 (48%), Gaps = 154/1207 (12%)
Query: 21 FLKTFCRKA-AVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVE-PGYDPSKKGE 78
L T R A A SFF GLV ++S+N+F++N LQ+ GE + E PG
Sbjct: 1 MLDTESRWAIAESFFKTRGLVRQHLDSFNDFLRNKLQQVIYEQGEIVTEVPGL------- 53
Query: 79 GEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKR 138
++ G++ +KPS + G ++ P ARL+N+TYSS + + +
Sbjct: 54 ------KIKLGKIRYEKPSIRETDKGPMREITPMEARLRNLTYSSPIFLSM--------- 98
Query: 139 VTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVK------SDLCWMKGVEKGDCDFDH 192
E I+ E + I IG +P+M+K S+L K +E G+ D
Sbjct: 99 -------IPVENNIEGEPIE-----IYIGDLPIMLKSVADPTSNLPIDKLIEIGEDPKDP 146
Query: 193 GGYFIIKGAEKVFVAQEQICLKRLWVS-NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIK 251
GGYFI+ G+EKV +AQE + R+ V G + + ++ + R+ M E +K
Sbjct: 147 GGYFIVNGSEKVIIAQEDLATNRVLVDYGKSGSNITHVAKVTSSAAGYRVQVM--IERLK 204
Query: 252 GGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKC 311
+S + IP I+ ALG +D++IV + D I N L S+ A +
Sbjct: 205 DSTIQISFATVPGRIPFAIIMRALGFVTDRDIVYAVSL---DPQIQNELLPSLEQASS-- 259
Query: 312 DEFRKGRNALKYVDKLIKGTTFPPG-------ESTEECMNTYLFPSLHGT-----KQKAR 359
AL ++ G G + E+ ++ Y P L GT K+K
Sbjct: 260 --ITSAEEALDFI-----GNRVAIGQKRENRIQKAEQVIDKYFLPHL-GTSPEDRKKKGY 311
Query: 360 FLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDL 419
+L V +L+ Y GRR+ D++D + NKR+ LAG+L +V K + L++
Sbjct: 312 YLASAVNKILELYLGRREPDDKDHYANKRVRLAGDLFTSLFRVAFKAFVKDLVYQLEKSK 371
Query: 420 YGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDL 479
R + + + A I+T + A +TG W RT G+ L R N L L L
Sbjct: 372 VRGRRLS-LTALVRADIITERIRHALATGNWVG--GRT----GVSQLLDRTNWLSMLSHL 424
Query: 480 RRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEPIFE 539
RR + +AR H + WG++C TP+G N GLVKNL + VS I E + E
Sbjct: 425 RRVVSSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALLAQVSVGINESVVE 484
Query: 540 QL-FNSGMEKLAD----------DASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRR 588
++ + G+ + D D + KV+++G +G +D ++R RR
Sbjct: 485 RVAYELGVVSVEDVIRRISEQNEDVEKYMSWS-KVYLNGRLLGYYEDGKELAKKIRESRR 543
Query: 589 RKELPTQVEIK--RDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQ 640
+ +L +V + + +EV I DAGR+ RPL++V N IK L+ TF
Sbjct: 544 QGKLSDEVNVAYIATDYLNEVHINCDAGRVRRPLIIVNNGTPLVDTEDIKKLKNGEITFD 603
Query: 641 ALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPF 700
L+ G IE + EEEE+ A + L D TH E+ S +LG+ IIP+
Sbjct: 604 DLVKQGKIEFIDAEEEENAYVALNPQDLTPD--------HTHLEIWPSAILGIIASIIPY 655
Query: 701 ANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGY 760
H+ + R YQS + Q++G +N IR DT +H L YPQ PL +T + LG GY
Sbjct: 656 PEHNQSPRNTYQS-AMAKQSLGLYASNYQIRTDTRAHLLHYPQMPLVQTRM---LGVIGY 711
Query: 761 GHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNK 820
RP G NAI+A+ + GYN EDS++MN++S+ERGM+RS R Y E
Sbjct: 712 ND-----RPA---GANAILAIMSYTGYNMEDSIIMNKSSIERGMYRSTFFRLYSTE---- 759
Query: 821 EMQVKRRSSDDMVN-FGKIQSKIGR--VDSLDDDGFPFIGANLQSGDIVIGKYA------ 871
E++ D +V ++ G+ L+D+G ++ GD++IGK +
Sbjct: 760 EVKYPGGQEDKIVTPEAGVKGYKGKDYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQ 819
Query: 872 --------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSM 923
+ D SI +H E G+V V+++ +G V +R +R P +GDKF++
Sbjct: 820 EFKELSPEQAKRDTSIVTRHGENGIVDLVLITETLEGNKLVKVRVRDLRIPEIGDKFATR 879
Query: 924 HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGIC 983
HGQKGV+G L Q + P+T +GIVPDI++NPHA PSR T GQ++EA GK A GK +
Sbjct: 880 HGQKGVVGILIDQVDMPYTAKGIVPDIILNPHALPSRMTIGQIMEAIGGKYAALSGKPVD 939
Query: 984 SGLKRYATPF-ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLI 1042
ATPF TP + + +++ + G TE +YDGRTG+ ++S I G +YQ+L
Sbjct: 940 ------ATPFLETPKLQEMQKEILKLGHLPDSTEVVYDGRTGQKLKSRILFGIVYYQKLH 993
Query: 1043 HMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSD 1102
HM DK+ R GPV LTRQP R R GG++FGEMERDCLI G A + +RL SD
Sbjct: 994 HMVADKMHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLIGFGTAMLIKDRLLDNSD 1053
Query: 1103 SYQMHICRKCKNVANVIQRVVGGGRKVRGPY-CRICDSGDDIVKANVPYGAKLLCQELFS 1161
++IC +C VG + + Y C + + V Y KLL QEL S
Sbjct: 1054 KAVVYICDQCG--------YVGWYDRSKNRYVCPVHGDKSVLHPVTVSYAFKLLIQELMS 1105
Query: 1162 MGITLKF 1168
M I+ +
Sbjct: 1106 MVISPRL 1112
>sp|P31814|RPOB_THECE DNA-directed RNA polymerase subunit B OS=Thermococcus celer GN=rpoB
PE=3 SV=1
Length = 1122
Score = 513 bits (1321), Expect = e-144, Method: Compositional matrix adjust.
Identities = 380/1202 (31%), Positives = 597/1202 (49%), Gaps = 180/1202 (14%)
Query: 32 SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
+++ E GLV ++SYN FI +G+Q+ D FG G P ++FG+V
Sbjct: 22 AYWKEKGLVRQHLDSYNAFIDHGMQEVIDEFG------GVKPDIPD------FEVKFGKV 69
Query: 92 TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
L +P F G ++P AR++N+TYS+ + +++ V
Sbjct: 70 RLGEPEFQEAQG-QRKPLYPMDARIRNLTYSAPIYLELIPVVNG---------------- 112
Query: 152 IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
+S E + IG +P+M+KS C + G ++ G+ D GGYFI+ G+E+V
Sbjct: 113 -----VSQEAVEVRIGELPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFIVNGSERVI 167
Query: 206 VAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVR----------LVDMSKFEDIKGGEK 255
V+ E + + V + + ++NR+I + L+ + + +D
Sbjct: 168 VSIEDLAPNKTLV----------ERDERQNRIIAKCFSYRHGYRALITVERRKD-----G 212
Query: 256 VLSVYFLSTEIPIWILFF--ALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDE 313
+L V + P+ ++ ALG+ SD+EIV + +D I ++LF ++ DA + +
Sbjct: 213 ILYVKLPNVPRPVKFVYVMRALGLLSDREIVEAV---SDDPRIQHVLFDNLEDASDVTTQ 269
Query: 314 FRKGRNALKYVDKLIKGTTFPPGESTE-------ECMNTYLFPSL----HGTKQKARFLG 362
AL Y+ KL PG+ E ++ L P + K KA +LG
Sbjct: 270 ----EEALDYIGKLSL-----PGQPKEYRLRRAQNIIDNNLLPHMGVEEKDRKAKAYYLG 320
Query: 363 YMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARK----RMAKALQRD 418
M +L+ G R D++D + NKRL+LAG+LL +V K +M K QR
Sbjct: 321 MMALRVLELSLGLRGEDDKDHYANKRLKLAGDLLMDLFRVAFGQLVKDMQYQMTKTYQRK 380
Query: 419 LYGDR-TVRPIEYYLDASI----LTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPL 473
G+R T I+ ++ SI L+ + A +TG+W P RT G+ L R N +
Sbjct: 381 --GERYTFENIQRFVRNSIRPDVLSERIEHALATGSW--PGGRT----GVSQLLDRTNYI 432
Query: 474 QTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI 533
TL LRR + +AR H +HWG+IC TP+G NCGLVKNL + ++T +
Sbjct: 433 STLSHLRRVTSPLSREQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMSQITTGV 492
Query: 534 LEP-IFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKEL 592
E + E L G+ + + ++++++G +G +D FV+ +R RR ++
Sbjct: 493 PEEEVREYLERLGVVPIEERRPNP--DLWRLYLNGVLVGTVEDGEGFVNRIRTDRRSGKI 550
Query: 593 P--TQVEIKRDELQSEVRIFMDAGRILRPLLVVEN------MGKIKSLEGKNYTFQALLD 644
V + +DE E+ + D GR+ RPL++VEN +++++ + T+ L+
Sbjct: 551 SDIINVALYQDEDVKEIYVNSDDGRVRRPLIIVENGRPKLTREHVEAIKNGSLTWSDLVK 610
Query: 645 HGIIELVGTEEEEDCCTA---WGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFA 701
G+IE + EEEE+ A W + + TH EL + +LG+ ++P+
Sbjct: 611 MGVIEYLDAEEEENALVATWPWEVTE-----------EHTHLELMPAAILGIPASLVPYP 659
Query: 702 NHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYG 761
H+ R Y + + Q++G N IRVDT H + YPQ PL + I +G
Sbjct: 660 EHNARPRNTYGA-GMAKQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVG----- 713
Query: 762 HNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKE 821
RP GQN +VAV + GYN ED+++MN+AS+ERG+ RS R+Y+AE + +
Sbjct: 714 ---FEERPA---GQNFVVAVLSYAGYNMEDAIIMNKASIERGLARSTFFRTYEAE-EKRY 766
Query: 822 M--QVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYA-------D 872
+ Q R D G + + R LD+DG F + + D+++G+ +
Sbjct: 767 LGGQTDRFEIPDPTIQGYLGERYYR--HLDEDGIIFPESKVNGKDVLVGRTSPPRFLEEQ 824
Query: 873 SGA---------DHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSM 923
SG + S+ ++ +E G+V KV+++ DG V+ R +R P GDKF+S
Sbjct: 825 SGLGGIILQERRETSLTVRPSETGVVDKVIITETGDGTKLVKVTTRDLRIPEFGDKFASR 884
Query: 924 HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGIC 983
HGQKGV+G + QE+ P+T GIVPD+++NPH PSR T GQL+EA GK +A+L
Sbjct: 885 HGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEAIGGK-VASL----- 938
Query: 984 SGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIH 1043
G + T F + + ++L GF G E +YDG TG + + +F+G +YQRL H
Sbjct: 939 KGRRVDGTAFIGEPEEKLRKELEELGFKHSGREVMYDGITGRRLEADVFVGVIYYQRLHH 998
Query: 1044 MSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDS 1103
M DK+ R+ GPV LT+QP R R GG++FGEMERD LI HGAA L ERL SD
Sbjct: 999 MVADKMHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLIGHGAAMLLIERLLEESDK 1058
Query: 1104 YQMHICRKCKNVANVIQRVVGGGRKVRGP-YCRICDSGDDIVKANVPYGAKLLCQELFSM 1162
++ +C C ++A +R RG YC +C + I K + Y KLL EL +M
Sbjct: 1059 TEVWVCENCGHIALEDKR--------RGKVYCPVCGEEERISKVEMSYAFKLLLDELKAM 1110
Query: 1163 GI 1164
GI
Sbjct: 1111 GI 1112
>sp|Q10233|RPC2_SCHPO DNA-directed RNA polymerase III subunit RPC2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpc2 PE=2 SV=1
Length = 1165
Score = 509 bits (1311), Expect = e-143, Method: Compositional matrix adjust.
Identities = 382/1216 (31%), Positives = 579/1216 (47%), Gaps = 183/1216 (15%)
Query: 32 SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETI--VEPGYDPSKKGEGEWRYASMRFG 89
+F GLV ++SYN F+ L+K + + VEP + +Y +R G
Sbjct: 56 AFLKVKGLVKQHLDSYNYFVDVDLKKIVQANEKVTSDVEPWF--------YLKYLDIRVG 107
Query: 90 Q-VTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGR 148
V D + A + P RL+++TY + + V +++ T
Sbjct: 108 APVRTDADAIQA-------SISPHECRLRDLTYGANIYVDIEY--------------TRG 146
Query: 149 EQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAE 202
+Q +++ N+ IGR+PVM++S+ C + G + +C D GGYFI+KG E
Sbjct: 147 KQVVRRR-------NVPIGRMPVMLRSNKCVLSGKNEMEMAALNECPLDPGGYFIVKGTE 199
Query: 203 KVFVAQEQICLKRLWVSNSMG---WTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
KV + QEQ+ R+ V W + S + ++ K G+ L
Sbjct: 200 KVILVQEQLSKNRIIVEAEPKKGLWQASVTSSTHERKSKTYVI-------TKNGKLYLKH 252
Query: 260 YFLSTEIPIWILFFALGVSSDKEIVNLI--------DF---TCEDCSILNILFASIHDAD 308
++ +IPI ++ A+G+ SD+EI L+ D + E+C+ LNI A
Sbjct: 253 NSVADDIPIVVVLKAMGLQSDQEIFELVAGAEASYQDLFAPSIEECAKLNIYTA------ 306
Query: 309 NKCDEFRKGRNALKYVDKLIK------GTTFPPGESTEECMNTYLFPSLH----GTKQKA 358
+ AL+Y+ +K PP E E + + ++ + KA
Sbjct: 307 ---------QQALEYIGARVKVNRRAGANRLPPHEEALEVLAAVVLAHINVFNLEFRPKA 357
Query: 359 RFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELL-----------ERELKVHIAHA 407
++G M + +L A + D+RD NKRLELAG+LL +LK++I
Sbjct: 358 VYIGIMARRVLMAMVDPLQVDDRDYVGNKRLELAGQLLALLFEDLFKKFNSDLKLNIDKV 417
Query: 408 RKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANL 467
K+ + + D Y TV + +T G+ RA STG WS + ER +G+ L
Sbjct: 418 LKKPHRTQEFDAYNQLTVH-------SDHITQGMVRALSTGNWSLKRFKMER-AGVTHVL 469
Query: 468 GRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-T 526
R + + L + R Q + T KV R S +G +C TP+GE CGLVKNL + T
Sbjct: 470 SRLSYISALGMMTRITSQFEKTRKVSGPRSLQASQFGMLCTSDTPEGEACGLVKNLALMT 529
Query: 527 GLVSTSILEPIFEQLFNSGMEKLADDASYSLG--GKFKVFVDGDWIGVCKDSLSFVSELR 584
+ + EPI + + G+E + + L G + V+++G +G+ + FV+ R
Sbjct: 530 HITTDEEEEPIIKLAYAFGIEDIHVISGRELHSHGTYLVYLNGAILGISRYPSLFVASFR 589
Query: 585 RKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVEN-MGKIKS-----LEGKNYT 638
+ RR ++ + I + Q V I D GRI RPL++V+N + K++S L+ +
Sbjct: 590 KLRRSGKISPFIGIFINTHQRAVFISTDGGRICRPLIIVQNGLPKVESKHIRLLKEGKWG 649
Query: 639 FQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGII 698
F+ L G++E V EE D I +DI TH E++ +LG G+I
Sbjct: 650 FEDFLKQGLVEYVDVNEENDSL----ISVYERDITPDT----THLEIEPFTILGAVAGLI 701
Query: 699 PFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKP 758
P+ +H+ + R YQ QAIG N R+DTL + + YPQ+P+ +T + +G
Sbjct: 702 PYPHHNQSPRNTYQC-AMGKQAIGAIAYNQLQRIDTLLYLMVYPQQPMVKTKTIELIG-- 758
Query: 759 GYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVD 818
+L GQNA VA+ + GY+ ED+LV+N++S++RG R + + V
Sbjct: 759 ---------YDKLPAGQNATVAIMSYSGYDIEDALVLNKSSIDRGFGRCQVFHKHSVIVR 809
Query: 819 NKEMQVKRRSSDDMVN--FGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA- 875
R D + G++ K G V+ DDG +G +Q G I + K + A
Sbjct: 810 KYPNGTHDRIGDPQRDPETGEVVWKHGVVE---DDGLAGVGCRVQPGQIYVNKQTPTNAL 866
Query: 876 DHSIKLKHT-----------------ERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGD 918
D+SI L HT E G + KV+L++ D + V +RQ R P LGD
Sbjct: 867 DNSITLGHTQTVESGYKATPMTYKAPEPGYIDKVMLTTTDSDQTLIKVLMRQTRRPELGD 926
Query: 919 KFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAAL 978
KFSS HGQKGV G + QE+ PF QGI PDI++NPH FPSR T G+++E GK
Sbjct: 927 KFSSRHGQKGVCGVIVQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMIELLSGK----- 981
Query: 979 GKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFY 1038
G+ G Y T F V+ + L G++ G + L G TGE + + IF+GP +Y
Sbjct: 982 -VGVLRGTLEYGTCFGGTKVEDASRILVEHGYNYSGKDMLTSGITGETLEAYIFMGPIYY 1040
Query: 1039 QRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLF 1098
Q+L HM DK+ R GP LTRQP R R GG++ GEMERDCLIA+GA+ L ERL
Sbjct: 1041 QKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLM 1100
Query: 1099 TLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQE 1158
SD+ + +C +C G +G +C C S ++VK +PY AKLL QE
Sbjct: 1101 ISSDACDVDVCGQC------------GLLGYKG-WCNSCQSTREVVKMTIPYAAKLLFQE 1147
Query: 1159 LFSMGIT--LKFDTEF 1172
L SM I L + EF
Sbjct: 1148 LLSMNIVPRLALEDEF 1163
>sp|P25167|RPC2_DROME DNA-directed RNA polymerase III subunit RPC2 OS=Drosophila
melanogaster GN=RpIII128 PE=2 SV=2
Length = 1137
Score = 507 bits (1306), Expect = e-142, Method: Compositional matrix adjust.
Identities = 377/1198 (31%), Positives = 572/1198 (47%), Gaps = 152/1198 (12%)
Query: 28 KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMR 87
K +F GLV I+S+N FI ++K + +V G DP +Y +R
Sbjct: 36 KLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVKA--NELVTSGADPL----FYLKYLDVR 89
Query: 88 FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
G+ +D F H+ RL++ TYS+ + V +++ TQ+
Sbjct: 90 VGKPDIDD-GFNITKATTPHE-----CRLRDTTYSAPITVDIEYTRGTQR---------- 133
Query: 148 REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGA 201
I++ N++IGR+P+M++ C + G + +C D GGYF+++G
Sbjct: 134 ----IKR-------NNLLIGRMPLMLRCSNCALTGKSEFELSKLNECPLDPGGYFVVRGQ 182
Query: 202 EKVFVAQEQICLKRLWVSNSMGWT---VAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLS 258
EKV + QEQ+ ++ + G V + K++R +V +SK G+ L
Sbjct: 183 EKVILIQEQLSWNKMLTEDFNGVVQCQVTSSTHEKKSRTLV----LSKH-----GKYYLK 233
Query: 259 VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGR 318
++ +IPI ++F ALGV SD+EI +LI D N AS+ DA N F + R
Sbjct: 234 HNSMTDDIPIVVIFKALGVVSDQEIQSLIGI---DSKSQNRFGASLIDAYN-LKVFTQQR 289
Query: 319 NALKY------VDKLIKGTTFPPGESTEECMNTYLFPSL----HGTKQKARFLGYMVKCL 368
AL+Y V + TT P E E + T + + + KA ++ MV+ +
Sbjct: 290 -ALEYMGSKLVVKRFQSATTKTPSEEARELLLTTILAHVPVDNFNLQMKAIYVSMMVRRV 348
Query: 369 LQAYSGRRKCDNRDDFRNKRLELAGELLER-----------ELKVHIAHARKRMAKALQR 417
+ A + D+RD + NKRLELAG LL ELK IA KA Q
Sbjct: 349 MAAELDKTLFDDRDYYGNKRLELAGSLLSMMFEDLFKRMNWELKT-IADKNIPKVKAAQF 407
Query: 418 DLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLV 477
D+ ++ A+ +T GL A S+G W+ + ER +G+ L R + + L
Sbjct: 408 DVVK---------HMRAAQITAGLESAISSGNWTIKRFKMER-AGVTQVLSRLSYISALG 457
Query: 478 DLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-P 536
+ R Q + T KV R PS WG +C TP+GE CGLVKNL + ++T + E P
Sbjct: 458 MMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERP 517
Query: 537 IFEQLFNSGMEKLADDASYSLGGK--FKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPT 594
+ FN+G+E + + + + F VF++G+ +G+ + V LR RR+ + +
Sbjct: 518 VMIVAFNAGVEDIREVSGNPINNPNVFLVFINGNVLGLTLNHKHLVRNLRYMRRKGRMGS 577
Query: 595 QVEIKRDELQSEVRIFMDAGRILRPLLVVEN---MGKIKSLEGKNY---TFQALLDHGII 648
V + Q + I D GR+ RP ++VEN + K L+ N F L G+I
Sbjct: 578 YVSVHTSYTQRCIYIHTDGGRLCRPYVIVENRRPLVKQHHLDELNRGIRKFDDFLLDGLI 637
Query: 649 ELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARR 708
E + EE D AW ED+ + TH E++ LLG+ G++P+ +H+ + R
Sbjct: 638 EYLDVNEENDSFIAWN--------EDQIEDRTTHLEIEPFTLLGVCAGLVPYPHHNQSPR 689
Query: 709 VLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPR 768
YQ QA+G N R+D+L + L YP P+ ++ + +
Sbjct: 690 NTYQC-AMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIE-----------LTNF 737
Query: 769 PELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRS 828
+L GQNA VAV + GY+ ED+L++N+AS++RG R ++ K V Q R
Sbjct: 738 DKLPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRI 797
Query: 829 SDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHS---------- 878
M + I + D LD DG G +Q+ I+I K + +
Sbjct: 798 MGPMKD-ALTNKVIFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVP 856
Query: 879 -----IKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFL 933
I K E +++V++S+N + + LRQ R P +GDKFSS HGQKGV G +
Sbjct: 857 YTAVPISYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLI 916
Query: 934 ESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF 993
QE+ PF GI PD+++NPH FPSR T G+ LE GK G+ G Y T F
Sbjct: 917 VEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLELLGGKA------GLLEGKFHYGTAF 970
Query: 994 ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRN 1053
V+ I +L R GF+ G + Y G TG + + I+ GP +YQ+L HM +DK+ R
Sbjct: 971 GGSKVEDIQAELERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKHMVQDKMHARA 1030
Query: 1054 TGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCK 1113
GP LTRQP R R GG++ GEMERDCLI++GA+ + ERL SD++++ +CR C
Sbjct: 1031 RGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTC- 1089
Query: 1114 NVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
GR +C C S ++ K ++PY KLL QEL SM + K E
Sbjct: 1090 ------------GRMAYCSWCHFCQSSANVSKISMPYACKLLFQELTSMNVVPKMILE 1135
>sp|P22276|RPC2_YEAST DNA-directed RNA polymerase III subunit RPC2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RET1 PE=1 SV=2
Length = 1149
Score = 505 bits (1300), Expect = e-141, Method: Compositional matrix adjust.
Identities = 371/1195 (31%), Positives = 584/1195 (48%), Gaps = 155/1195 (12%)
Query: 32 SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
+F GLV ++S+N F+ L+K + ++ DP E +Y +R G+
Sbjct: 50 AFLKVKGLVKQHLDSFNYFVDTDLKKIIKA--NQLILSDVDP----EFYLKYVDIRVGKK 103
Query: 92 TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
+ + ++ P RL++MTYS+ + V ++ YT+ GR
Sbjct: 104 S--------SSSTKDYLTPPHECRLRDMTYSAPIYVDIE---YTR----------GRNII 142
Query: 152 IQKEVLSDETTNIIIGRIPVMVKSDLCWM------KGVEKGDCDFDHGGYFIIKGAEKVF 205
+ K+V IGR+P+M++S+ C + K + +C D GGYFI+ G EKV
Sbjct: 143 MHKDVE--------IGRMPIMLRSNKCILYDADESKMAKLNECPLDPGGYFIVNGTEKVI 194
Query: 206 VAQEQICLKRLWVS--NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLS 263
+ QEQ+ R+ V G A + + R + K G+ L ++
Sbjct: 195 LVQEQLSKNRIIVEADEKKGIVQASVTSSTHER------KSKTYVITKNGKIYLKHNSIA 248
Query: 264 TEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKY 323
EIPI I+ A G+ SD EI+ L+ C + S +FA + +K D + + + AL+Y
Sbjct: 249 EEIPIAIVLKACGILSDLEIMQLV---CGNDSSYQDIFAVNLEESSKLDIYTQ-QQALEY 304
Query: 324 VDKLIKG------TTFPPG-ESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRR 376
+ +K T G E+ + +L ++KA ++ M + ++ A +
Sbjct: 305 IGAKVKTMRRQKLTILQEGIEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAMYNPK 364
Query: 377 KCDNRDDFRNKRLELAGELLE-----------RELKVHIAHARKRMAKALQRDLYGDRTV 425
D+RD NKRLELAG+L+ + K+ I K+ +A++ D
Sbjct: 365 MIDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDAL----- 419
Query: 426 RPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQ 485
+ + ++ +T+GL+RA STG WS + ER +G+ L R + + L + R Q
Sbjct: 420 --LSINVHSNNITSGLNRAISTGNWSLKRFKMER-AGVTHVLSRLSYISALGMMTRISSQ 476
Query: 486 VQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGV-TGLVSTSILEPIFEQLFNS 544
+ + KV R PS +G +C TP+GE CGLVKNL + T + + EPI + +
Sbjct: 477 FEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCYVL 536
Query: 545 GMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQ 604
G+E + S SL + V+++G IG + FV++ R RR ++ + I + Q
Sbjct: 537 GVEDITLIDSASLHLNYGVYLNGTLIGSIRFPTKFVTQFRHLRRTGKVSEFISIYSNSHQ 596
Query: 605 SEVRIFMDAGRILRPLLVVEN-MGKIKSLEGKNYT-----FQALLDHGIIELVGTEEEED 658
V I D GRI RPL++V + ++K + + F L G++E + EE D
Sbjct: 597 MAVHIATDGGRICRPLIIVSDGQSRVKDIHLRKLLDGELDFDDFLKLGLVEYLDVNEEND 656
Query: 659 CCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSS 718
A K ++ + TH E++ +LG G+IP+ +H+ + R YQ
Sbjct: 657 SYIALYEKDIVPSM--------THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQC-AMGK 707
Query: 719 QAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAI 778
QAIG N R+DTL + + YPQ+P+ +T + ++ +L GQNA
Sbjct: 708 QAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIE-----------LIDYDKLPAGQNAT 756
Query: 779 VAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSD---DMVNF 835
VAV + GY+ ED+LV+N++S++RG R E R K V +R ++ D++
Sbjct: 757 VAVMSYSGYDIEDALVLNKSSIDRGFGRCETRR--------KTTTVLKRYANHTQDIIGG 808
Query: 836 GKIQSK---IGRVDSLDDDGFPFIGANLQSGDIVIGKY-----ADSGADHSIKLKHTER- 886
++ I + SL DG +G +QSG I I K AD+ +++ ++ R
Sbjct: 809 MRVDENGDPIWQHQSLGPDGLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQTQYRE 868
Query: 887 ----------GMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ 936
+ +V++S +D+ + V LRQ R P LGDKFSS HGQKGV G + Q
Sbjct: 869 APVIYRGPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQ 928
Query: 937 ENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATP 996
E+ PF QGIVPDI++NPH FPSR T G+++E GK G+ +G Y T F
Sbjct: 929 EDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKA------GVLNGTLEYGTCFGGS 982
Query: 997 SVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGP 1056
++ +++ L GF+ G + LY G TGE +++ IF GP +YQ+L HM DK+ R GP
Sbjct: 983 KLEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARARGP 1042
Query: 1057 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVA 1116
LTRQP R R GG++ GEMERDC+IA+GA+ L ERL SD++++ +C KC
Sbjct: 1043 RAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDAFEVDVCDKC---- 1098
Query: 1117 NVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
G +C C S ++I+K +PY AKLL QEL SM I + E
Sbjct: 1099 ---------GLMGYSGWCTTCKSAENIIKMTIPYAAKLLFQELLSMNIAPRLRLE 1144
>sp|Q03587|RPOB_THEAC DNA-directed RNA polymerase subunit B OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rpoB PE=3 SV=1
Length = 1195
Score = 483 bits (1242), Expect = e-135, Method: Compositional matrix adjust.
Identities = 387/1267 (30%), Positives = 612/1267 (48%), Gaps = 214/1267 (16%)
Query: 32 SFFNEYGLVSHQINSYNEFIKNG------LQKAFDSFGETIV----EPGY---DPSKKGE 78
++F +YG+V+HQ++S N F +Q+ D ET V +PGY DP+K G
Sbjct: 7 AYFKKYGIVNHQLDSMNSFYATPDNPNSVMQQIVD---ETKVSDDADPGYFVLDPAKTGG 63
Query: 79 GEWR--YASMRFGQVTLDKPSFFAGN------GGDEHDMFPRHARLQNMTYSSRMKVKVQ 130
+ R Y +R + + + F G G + + P ARL+++ Y + + +K+
Sbjct: 64 HDIRIYYGRVRENGHYVGEQTIFIGKPEIKEASGASNQITPNEARLRDLNYLAPVTLKL- 122
Query: 131 FQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM------KGVE 184
R+ D + G E I +G +PVMV+S +C + + +E
Sbjct: 123 -------RIVEDGIEKGSEI-------------IKVGDLPVMVRSKICTLSEENLDQYIE 162
Query: 185 K----------------GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAY 228
K G+ D GGYFII G+E+V V+ E + ++ V W Y
Sbjct: 163 KNNGPIGLSRREKLQYVGEDPDDPGGYFIIGGSERVIVSLEDLAPNKIMVE----WEDRY 218
Query: 229 KSENKRNRLIVR------LVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKE 282
+S+ + +++ + L M K D G +S+ ++ +P+ IL ALG+ D +
Sbjct: 219 ESKVEVSKVFSQRGGFRALTSMEKGTD---GTINVSIPSVAGTVPLVILMKALGLERDVD 275
Query: 283 IVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN----ALKYVDKLIKGTTFPPGES 338
+ + I E + I++++I D+ N G N A+ Y++K F G++
Sbjct: 276 VHDAIASVPE---MEPIIYSNIEDSKNPKVLPPNGVNTTEDAISYLEK-----RFAAGQA 327
Query: 339 TE-------ECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNK 387
E + ++ L P L + +KA +LG M + LL+ G RK D++D NK
Sbjct: 328 KEFRDKKISQMLDHSLLPHLGDSPSDRIRKAIYLGRMARSLLELSLGIRKEDDKDHLANK 387
Query: 388 RLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFST 447
R++LAG+L++ + K + L++ R ++ I + +LT + A ST
Sbjct: 388 RIKLAGDLMDELFRSAFQSVMKDLKYQLEKTYNRKRGIK-IRPAVRQDLLTQRVLHAMST 446
Query: 448 GAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKIC 507
G W RT G+ L R + L T+ LRR + T +AR HP+ WG+IC
Sbjct: 447 GNWIG--GRT----GVSQLLDRVSNLSTISHLRRIISPLTRTQPHFEARDLHPTQWGRIC 500
Query: 508 FLSTPDGENCGLVKNLGVTGLVSTSI-LEPIFEQLFNSGMEKLADDASYSLGGKFKVFVD 566
TP+G+NCGLVKN + V+ I + + E L + ++ +++ K +V+++
Sbjct: 501 PNETPEGQNCGLVKNAALLINVTQGIDPDSVMEILKGMDVREVLEESP----KKGRVYLN 556
Query: 567 GDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENM 626
GD+IG D VS +R +RR + +V ++ D+ +EV + D GR+ RPLL++++
Sbjct: 557 GDFIGYHDDPRYLVSRIREERRSGRMSDEVNVRYDDNTNEVIVNSDRGRLRRPLLILKD- 615
Query: 627 GK-------IKSLEGKNYTFQALLDHGIIELVGTEEEED---CCTAWGI--------KYL 668
GK I+ L+ +F+ L+ G IE + EEEED A+ I YL
Sbjct: 616 GKTVLDRTMIERLKHGEISFEDLVKQGAIEWLDAEEEEDTYVAVYAYDIPEKCPHCNSYL 675
Query: 669 LKDIED--------------------KKPIKF----THCELDMSFLLGLSCGIIPFANHD 704
+ + D P K TH E+D + +LG+ IIP+ H+
Sbjct: 676 YRSMVDWVNPGESEITLECGFCHQRFNVPSKLSKENTHLEIDPAMILGVVASIIPYPEHN 735
Query: 705 HARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNH 764
+ R+ S + Q++GF +N IR DT H L YPQ PL RT + D + H
Sbjct: 736 SSPRITIASAM-AKQSLGFAQSNVRIRPDTRGHLLHYPQVPLVRTRVMDYI--------H 786
Query: 765 ILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQV 824
RP GQN +VAV + GYN +D+LV+N+A++ERG+ RS R+Y AE
Sbjct: 787 YDRRPA---GQNFVVAVLSYEGYNIQDALVINKAAIERGLGRSTFFRTYSAE-------- 835
Query: 825 KRRSSDDMVNFGKIQSK--IGR-----VDSLDDDGFPFIGANLQSGDIVIGK-----YAD 872
+RR + +I + IG +LDD G F A ++ D++IGK + +
Sbjct: 836 ERRYPGGQEDKFEIPTHDIIGARAEEYYKNLDDSGIIFPEAYVEGSDVLIGKTSPPRFLE 895
Query: 873 SGADH---------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSM 923
G + S+ ++ E G V V L+ ++ + +R R P LGDKF+S
Sbjct: 896 EGEERLGPQRRRESSVTMRPNESGYVDNVFLTVSESNSRVVKIKVRSERIPELGDKFASR 955
Query: 924 HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGIC 983
HGQKGV+G + QE+ PFT GI+PD++ NPH+ PSR T G +LE GK + G+ I
Sbjct: 956 HGQKGVVGLVVPQEDMPFTEDGIIPDLIFNPHSIPSRMTVGHILEMIGGKIASRTGRFID 1015
Query: 984 SGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIH 1043
T F+ ++ + L + GF K TE +YDG TG ++ IF+G +YQ+L H
Sbjct: 1016 ------GTIFSGEPEKSLRDALVKYGFRKSSTEVMYDGITGRRFKADIFVGVIYYQKLHH 1069
Query: 1044 MSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDS 1103
M K R+ GPV LTRQP R R GG++FGEMERD LIAHGAA + +RL SD
Sbjct: 1070 MVAGKFHARSRGPVQILTRQPTEGRSRQGGLRFGEMERDTLIAHGAAMVIKDRLLDQSDG 1129
Query: 1104 YQMHIC--RKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFS 1161
+++C C ++A + R G R C +C + +I Y KL+ EL S
Sbjct: 1130 TVLYVCGNPSCGHIA-IYDRRKGTLR------CPVCGNTGNIYPIETSYAFKLMRDELIS 1182
Query: 1162 MGITLKF 1168
+G+ ++
Sbjct: 1183 LGVVMRL 1189
>sp|P59470|RPC2_MOUSE DNA-directed RNA polymerase III subunit RPC2 OS=Mus musculus
GN=Polr3b PE=2 SV=2
Length = 1133
Score = 480 bits (1236), Expect = e-134, Method: Compositional matrix adjust.
Identities = 367/1185 (30%), Positives = 554/1185 (46%), Gaps = 146/1185 (12%)
Query: 32 SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYASMRFG 89
+F GLV I+S+N FI ++K I++ + + W +Y ++ G
Sbjct: 32 AFLKVKGLVKQHIDSFNYFINVEIKK--------IMKANEKVTSDADPMWYLKYLNIYVG 83
Query: 90 QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
+++ SF + P RL++MTYS+ + V +++ T
Sbjct: 84 LPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEY--------------TRGS 123
Query: 150 QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
Q I + L IGR+P+M++S C + G + +C D GGYFI+KG EK
Sbjct: 124 QRIIRNALP-------IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEK 176
Query: 204 VFVAQEQICLKRLWVS----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
V + QEQ+ R+ V ++G +V + K++R +M+ +K G L
Sbjct: 177 VILIQEQLSKNRIIVEADRKGAVGASVTSSTHEKKSR-----TNMA----VKQGRFYLRH 227
Query: 260 YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
LS +IPI I+F A+GV SD+EIV +I + ++ S+ + K F +
Sbjct: 228 NTLSEDIPIVIIFKAMGVESDQEIVQMIG---TEEHVMAAFGPSLEEC-QKAQIFTQ-MQ 282
Query: 320 ALKYVDKLIKGTTF----PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGR 375
ALKY+ ++ P EE L S T + + KC+ A R
Sbjct: 283 ALKYIGNKVRRQRMWGGGPKKTKIEEARE--LLASTILTHVPVKEFNFRAKCIYTAVMVR 340
Query: 376 R--------KCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR- 426
R K D+RD + NKRLELAG+LL + M K + + R +
Sbjct: 341 RVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQF 400
Query: 427 PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
+ ++ +TNG+ A STG WS + +R G+ L R + + L + R Q
Sbjct: 401 DVVKHMRQDQITNGMVNAISTGNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQF 459
Query: 487 QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSG 545
+ T KV R PS WG +C TP+GE CGLVKNL + ++T + + PI + N G
Sbjct: 460 EKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAGNLG 519
Query: 546 MEKL----ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
+E + ++ SY F VF++G+ +GV +D VS R RR + V I +
Sbjct: 520 VEDVNLLCGEELSYP--NVFLVFLNGNILGVIRDHKKLVSTFRLMRRAGYINEFVSISTN 577
Query: 602 ELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHGIIELVGTEE 655
V I D GR+ RP ++V+ ++ L F+ L ++E + E
Sbjct: 578 LTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNE 637
Query: 656 EEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQK 715
E DC A + KD TH E++ LLG+ G+IP+ +H+ + R YQ
Sbjct: 638 ENDCNIALYEHTINKDT--------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-A 688
Query: 716 HSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQ 775
QA+G N R+DTL + L YPQ+P+ +T + ++ +L GQ
Sbjct: 689 MGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIE-----------LIDFEKLPAGQ 737
Query: 776 NAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF 835
NA VAV + GY+ ED+LV+N+ASL+RG R ++ K + Q + M++
Sbjct: 738 NATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLD- 796
Query: 836 GKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA----------------DHSI 879
+ I R + LD DG G +++ +++ K + D I
Sbjct: 797 AATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPI 856
Query: 880 KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENF 939
K ++KV++SSN + + LRQ R P +GDKFSS HGQKGV G + QE+
Sbjct: 857 TYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDM 916
Query: 940 PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVD 999
PF GI PDI++NPH FPSR T G+L+E GK G+ G Y T F V
Sbjct: 917 PFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKA------GVLDGRFHYGTAFGGSKVK 970
Query: 1000 AITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHP 1059
+ E L R G++ G + + G TGE + + I+ GP +YQ+L HM DK+ R GP
Sbjct: 971 DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030
Query: 1060 LTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVI 1119
LTRQP R R GG++ GEMERDCLI +GA+ L ERL SD++++ +C +C
Sbjct: 1031 LTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQC------- 1083
Query: 1120 QRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
G +C C S + +PY KLL QEL SM I
Sbjct: 1084 ------GLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNI 1122
>sp|Q9NW08|RPC2_HUMAN DNA-directed RNA polymerase III subunit RPC2 OS=Homo sapiens
GN=POLR3B PE=1 SV=2
Length = 1133
Score = 479 bits (1232), Expect = e-134, Method: Compositional matrix adjust.
Identities = 366/1185 (30%), Positives = 554/1185 (46%), Gaps = 146/1185 (12%)
Query: 32 SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEW--RYASMRFG 89
+F GLV I+S+N FI ++K I++ + + W +Y ++ G
Sbjct: 32 AFLKVKGLVKQHIDSFNYFINVEIKK--------IMKANEKVTSDADPMWYLKYLNIYVG 83
Query: 90 QVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE 149
+++ SF + P RL++MTYS+ + V +++ T
Sbjct: 84 LPDVEE-SFNV-----TRPVSPHECRLRDMTYSAPITVDIEY--------------TRGS 123
Query: 150 QYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEK 203
Q I + L IGR+P+M++S C + G + +C D GGYFI+KG EK
Sbjct: 124 QRIIRNALP-------IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEK 176
Query: 204 VFVAQEQICLKRLWVS----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSV 259
V + QEQ+ R+ V ++G +V + K++R +M+ +K G L
Sbjct: 177 VILIQEQLSKNRIIVEADRKGAVGASVTSSTHEKKSR-----TNMA----VKQGRFYLRH 227
Query: 260 YFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRN 319
LS +IPI I+F A+GV SD+EIV +I + ++ S+ + K F +
Sbjct: 228 NTLSEDIPIVIIFKAMGVESDQEIVQMIG---TEEHVMAAFGPSLEEC-QKAQIFTQ-MQ 282
Query: 320 ALKYVDKLIKGTTF----PPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGR 375
ALKY+ ++ P EE L S T + + KC+ A R
Sbjct: 283 ALKYIGNKVRRQRMWGGGPKKTKIEEARE--LLASTILTHVPVKEFNFRAKCIYTAVMVR 340
Query: 376 R--------KCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVR- 426
R K D+RD + NKRLELAG+LL + M K + + R +
Sbjct: 341 RVILAQGDNKVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQF 400
Query: 427 PIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
+ ++ +TNG+ A STG WS + +R G+ L R + + L + R Q
Sbjct: 401 DVVKHMRQDQITNGMVNAISTGNWSLKRFKMDR-QGVTQVLSRLSYISALGMMTRISSQF 459
Query: 487 QYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSG 545
+ T KV R PS WG +C TP+GE CGLVKNL + ++T + + PI + N G
Sbjct: 460 EKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLG 519
Query: 546 MEKL----ADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRD 601
+E + ++ SY F VF++G+ +GV +D V+ R RR + V I +
Sbjct: 520 VEDVNLLCGEELSYP--NVFLVFLNGNILGVIRDHKKLVNTFRLMRRAGYINEFVSISTN 577
Query: 602 ELQSEVRIFMDAGRILRPLLVVENMGK------IKSLEGKNYTFQALLDHGIIELVGTEE 655
V I D GR+ RP ++V+ ++ L F+ L ++E + E
Sbjct: 578 LTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNE 637
Query: 656 EEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQK 715
E DC A + KD TH E++ LLG+ G+IP+ +H+ + R YQ
Sbjct: 638 ENDCNIALYEHTINKDT--------THLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQC-A 688
Query: 716 HSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQ 775
QA+G N R+DTL + L YPQ+P+ +T + ++ +L GQ
Sbjct: 689 MGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIE-----------LIEFEKLPAGQ 737
Query: 776 NAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNF 835
NA VAV + GY+ ED+LV+N+ASL+RG R ++ K + Q + M++
Sbjct: 738 NATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLD- 796
Query: 836 GKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGA----------------DHSI 879
+ I R + LD DG G +++ +++ K + D I
Sbjct: 797 AATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPI 856
Query: 880 KLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENF 939
K ++KV++SSN + + LRQ R P +GDKFSS HGQKGV G + QE+
Sbjct: 857 TYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDM 916
Query: 940 PFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVD 999
PF GI PDI++NPH FPSR T G+L+E GK G+ G Y T F V
Sbjct: 917 PFCDSGICPDIIMNPHGFPSRMTVGKLIELLAGKA------GVLDGRFHYGTAFGGSKVK 970
Query: 1000 AITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHP 1059
+ E L R G++ G + + G TGE + + I+ GP +YQ+L HM DK+ R GP
Sbjct: 971 DVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAV 1030
Query: 1060 LTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVI 1119
LTRQP R R GG++ GEMERDCLI +GA+ L ERL SD++++ +C +C
Sbjct: 1031 LTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCGQC------- 1083
Query: 1120 QRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGI 1164
G +C C S + +PY KLL QEL SM I
Sbjct: 1084 ------GLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNI 1122
>sp|Q7T6X7|RPO2_MIMIV DNA-directed RNA polymerase subunit 2 OS=Acanthamoeba polyphaga
mimivirus GN=RPO2 PE=1 SV=2
Length = 1196
Score = 419 bits (1078), Expect = e-116, Method: Compositional matrix adjust.
Identities = 358/1224 (29%), Positives = 569/1224 (46%), Gaps = 163/1224 (13%)
Query: 39 LVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSF 98
LV H I+S+N+FI+ + I E K E + + F + + P+
Sbjct: 35 LVKHHIDSFNQFIEEIIPNILQGGDNVISE------KATENKIIRYRLTFNDLGIKPPTL 88
Query: 99 FAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLS 158
+E+ ++P A + ++YS++ V Q V D KT + ++
Sbjct: 89 ----ENEENLLYPLDAIRKQISYSAKYTATV---TQWQDIVDIDTKKT------ETRIIG 135
Query: 159 DETTNIIIGRIPVMVKSDLCWMK---GVEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKR 215
++ I +IP+MV S C + + C +D GGYFI+ G+EKV ++ E + ++
Sbjct: 136 SPEKDVPIAKIPIMVLSKYCNLTLRPDIAGKHCKYDAGGYFIVNGSEKVVLSVESMIPRK 195
Query: 216 LWV-----SNSMGWTVAYKSENKRNRL---IVRLVDMSKFEDIKGGEKVLSVYFLSTEIP 267
V NS+ + V +S + + V M + I +LS+ E+
Sbjct: 196 PVVFTQRDQNSLLYYVRVQSIPASQFVGNPQLFTVKMKRDNSI-----ILSIPHFK-EVS 249
Query: 268 IWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKL 327
I+ ALG+ +D++IV+ I ++ +LN+L ++ ++ AL+ +
Sbjct: 250 IFTFIRALGIETDEDIVDSILDVKKEKDLLNLLSICMNSSNTPS---VTKEEALEIMANQ 306
Query: 328 IKGT-TFP---PGESTEE-------CMNTYLFPSL-HGTKQ-------KARFLGYMVKCL 368
IK T TF P E+ M ++ P + GT KA ++ YM+ L
Sbjct: 307 IKSTKTFTDTNPEVKAEQRRRYLDKIMTQFVLPHITSGTGDPEIDKIYKAHYICYMIHKL 366
Query: 369 LQAY-------SGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYG 421
L+ Y R CD+RD NKR++L G LL K K +
Sbjct: 367 LKCYLRGAREVEEYRGCDDRDSMVNKRIDLTGRLLGGLFKQFYDKMLNDCNKIFRTKNID 426
Query: 422 DRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRR 481
D+ I ++ + + GL +A STG + ++ G+ L R N L +L +RR
Sbjct: 427 DKKPPNIIPHIKPNSIEQGLRQALSTGNFGSQSRK-----GLSQMLNRMNHLHSLSYMRR 481
Query: 482 --TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGE-NCGLVKNL----GVTGLVSTSIL 534
T T K+ R+ H + +G +C L +P+G+ GLVKN+ G+T +++ I
Sbjct: 482 VITPTVDASTMKMTSPRHLHNTQYGSMCPLESPEGKPKTGLVKNMAMMEGITINMNSQI- 540
Query: 535 EPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPT 594
PI E + L L KVF++G+W+GV ++ + ++LR R R EL
Sbjct: 541 -PIIESYLIGKITTLESANKKRLHQYVKVFLNGNWLGVTRNIIKIHNDLRAMRFRGELSR 599
Query: 595 QVEIKRDELQSEVRIFMDAGRILRPLLVV---------ENMGKIKSLEGKNYTFQALLDH 645
V + + +E I+ D GR++RP L V E + ++ S E F A
Sbjct: 600 MVGLVLNYKTAEFHIYTDGGRLIRPYLTVTDNKLNFKPEMLDEVNSWE----EFLAKFPE 655
Query: 646 GIIELVGTEEEEDCCTAWGIKYL--LKDIEDKKPI---------------------KFTH 682
+IE V EEE++ A +Y+ I KKPI ++TH
Sbjct: 656 -VIEYVDKEEEQNIMLAVFPQYIQDANRIMSKKPINSRDQLNKINRTNRYDDNVYVRYTH 714
Query: 683 CELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYP 742
CE+ +LGL IPF +H+ + R ++Q + + QA+G ++ R D +S+ L++P
Sbjct: 715 CEIHPCMILGLISSNIPFPDHNQSPRGIFQYNQ-ARQAMGLYISDYRERTD-ISYILYHP 772
Query: 743 QRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLG-YNQEDSLVMNRASLE 801
Q PL + S Y HI P G+N+IVA+ + G NQEDSLV+N ++++
Sbjct: 773 QIPLVTSRASK------YTGTHIFPA-----GENSIVAIASYTGLMNQEDSLVINDSAIQ 821
Query: 802 RGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQS-KIGRVDSLDDDGFPFIGANL 860
+G R++ ++ Y E+ K + S + K+ + + D L ++G+ + +
Sbjct: 822 KGYMRAQALKKY-MEIIKKNPASSQTSIFMKPDRNKVDNLRDANYDKLSEEGYAKVETVI 880
Query: 861 QSGDIVIG-------------KYADSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVS 907
+ GD+VIG +Y D+ + + K G V KV+ N+DG +
Sbjct: 881 RDGDVVIGVVNPKPTAREDEKQYKDASSIY----KSLIPGAVDKVITEVNNDGYPIIKMR 936
Query: 908 LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLL 967
+R R P +GDKFSS GQKG +G+ + + F+ G++PDI+INP+ P R T GQL+
Sbjct: 937 IRSERIPNVGDKFSSRAGQKGTIGYKAHRADMLFSKSGLIPDIIINPNCMPKRMTIGQLI 996
Query: 968 EAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMV 1027
E LGK A KG+ ATPF + ++AI ++L AG+ +WG E +Y+G G+ +
Sbjct: 997 ECLLGKLCAV--KGVYGD----ATPFTSVDLNAINDELVAAGYEEWGNETMYNGMNGKKL 1050
Query: 1028 RSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFG-EMERDCLIA 1086
IFIGPT+YQRL M DK R GP LTRQ R R GG++ G EMERD L A
Sbjct: 1051 PVKIFIGPTYYQRLKQMVGDKAHSRARGPTQLLTRQAPEGRSRDGGLRIGFEMERDALCA 1110
Query: 1087 HGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKA 1146
HG A L E+ SD Y H+C C A+ + + + C C + I K
Sbjct: 1111 HGVAQFLKEKTVDNSDIYTCHVCDSCGQFAHKVP-------EKKYYTCTGCRNTTSISKI 1163
Query: 1147 NVPYGAKLLCQELFSMGITLKFDT 1170
+PY KLL QEL S+ I K T
Sbjct: 1164 VIPYAFKLLLQELASINILGKIRT 1187
>sp|O27124|RPOB1_METTH DNA-directed RNA polymerase subunit B' OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoB1 PE=3 SV=1
Length = 603
Score = 402 bits (1034), Expect = e-111, Method: Compositional matrix adjust.
Identities = 248/638 (38%), Positives = 346/638 (54%), Gaps = 72/638 (11%)
Query: 560 KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRP 619
K K++++G IG C++ FV E+R+KRR E+ ++ I E+ IF D GR RP
Sbjct: 3 KTKIYINGKLIGTCENPEEFVEEMRKKRRSGEVSPEMNITHYPENHEIYIFTDPGRARRP 62
Query: 620 LLVVEN------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIE 673
L++VE+ ++ LE ++ L+ GIIE + EEEE+ A
Sbjct: 63 LIIVEDGEPLLTEEHLEKLETGEMSWDDLIAAGIIEYLDAEEEENAYIAMS--------P 114
Query: 674 DKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVD 733
D+ + TH E+D S +LG+ GIIPFANH+ + R ++ + QA+G +N +R D
Sbjct: 115 DEINDEHTHLEIDPSTMLGICAGIIPFANHNSSPRNTMEA-GMTKQALGLYASNYDLRTD 173
Query: 734 TLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSL 793
T +H L +PQ P+ +T I D G Y RP +GQN +VAV + GYN ED+L
Sbjct: 174 TRAHLLHHPQVPIVKTRIIDVTG---YDE-----RP---SGQNFVVAVMSYEGYNMEDAL 222
Query: 794 VMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRR---SSDDMVNFGKIQSKIGRVDS--- 847
++N+ASLERG+ RS RSY+A +RR +D + + R +S
Sbjct: 223 ILNKASLERGLARSSFFRSYEA--------AERRYPGGQEDRFEIPEKGVRGYRSESDYR 274
Query: 848 -LDDDGFPFIGANLQSGDIVIGK---------------YADSGADHSIKLKHTERGMVQK 891
LD+DG A + SGD++IGK A+ + S+ ++H E+G+V
Sbjct: 275 HLDEDGIINPEAEVSSGDVLIGKTSPPRFLEEIDEFGTVAERRRETSVTVRHGEKGIVDA 334
Query: 892 VVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIV 951
V+L+ +G + + +R+ R P LGDKF+S HGQKGV+G + SQE+ PFT GIVPD++
Sbjct: 335 VLLTETVEGSRLAKIRVREQRQPELGDKFASRHGQKGVVGLIVSQEDMPFTEDGIVPDLI 394
Query: 952 INPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFS 1011
+NPHA PSR + GQ+LE GK G+ + TPF D I E L GF
Sbjct: 395 VNPHAIPSRMSVGQVLEMLAGKAACMEGRRVD------GTPFTGEDEDDIKEALRANGFE 448
Query: 1012 KWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRF 1071
G E LY+G TGE + + IFIG +YQ+L HM+ DKV R+ GPV LTRQP R R
Sbjct: 449 TAGVESLYNGITGERIEAEIFIGVAYYQKLHHMTTDKVYARSRGPVQVLTRQPTEGRARE 508
Query: 1072 GGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRG 1131
GG++FGEMERDCLIAHGAA L ERL SD Y+ +C C +A K+R
Sbjct: 509 GGLRFGEMERDCLIAHGAALALKERLLDESDKYEALVCADCGMIAVY--------DKIRD 560
Query: 1132 -PYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
YC IC+ + V Y KLL EL S+ I K
Sbjct: 561 KKYCPICEDSESF-PVEVSYAFKLLLDELKSLCIFPKL 597
>sp|Q197F1|RPB2_IIV3 Probable DNA-directed RNA polymerase II subunit RPB2 homolog
OS=Invertebrate iridescent virus 3 GN=IIV3-009R PE=3 SV=1
Length = 1140
Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust.
Identities = 352/1224 (28%), Positives = 558/1224 (45%), Gaps = 187/1224 (15%)
Query: 28 KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMR 87
K +F GLV HQI ++N FI GL+ ++ + S K + Y S++
Sbjct: 21 KIVADYFKTNGLVKHQIETFNHFISKGLKTIINN----------ESSIKYQSHDNY-SLK 69
Query: 88 FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
F + ++ PS + D++P+ AR ++++Y+ + V V V + K G
Sbjct: 70 FTNIYVEYPSII-DDDRTIRDLYPQEARNKDLSYTGNVCVNVIEMV---------ENKEG 119
Query: 148 REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVE-------KGDCDFDHGGYFIIKG 200
+ I E + I +IP+M+ SD+C + G D GGYFII G
Sbjct: 120 KPPQIS------EQYRVPIAKIPIMLGSDVCHLSKYTPLENEQINGHSQADQGGYFIING 173
Query: 201 AEKVFVAQEQICLKRLWVSNSMGWTVAY--KSENKRNRLIVRLVDMSK--FEDIKGGEKV 256
E+V ++Q V + V + + K + LI + M + F K+
Sbjct: 174 KERVLISQ---------VRKAYNKPVCFVKSTSQKEDVLICEMRSMCEETFHSTSVQVKM 224
Query: 257 LSVYFLST--------EIPIWILFFALGVSSD------KEIVNL-------IDFTCEDC- 294
+ + + +IP+ I+F LG + D + + NL ID DC
Sbjct: 225 IKNKIMVSLKLKRKLIDIPVGIVFKCLGYNPDQMGSKFRSLFNLPPEYEKYIDAIKNDCL 284
Query: 295 -SILNILFASIHDADNK-----------CDE----FRKGRNALKYVDK----LIKGTTFP 334
+ S D DN D+ + RN VDK G T
Sbjct: 285 EEFAYGIAVSAADGDNSDSGGESGGEEEADQEEHIVKVFRNMSTSVDKDGGMAATGITI- 343
Query: 335 PGESTEECMNTYLFPSLHGT---KQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLEL 391
E ++ ++ LFP L T KQ+ L +MVK L + + DNRDD+ +KR+E
Sbjct: 344 --EDVQKSLDMDLFPHLGITSTRKQRVDLLAFMVKKYLLTLTRKIPVDNRDDYNHKRVET 401
Query: 392 AGELLERELKVHIAHARKRMAKALQRDLYGDRTVRP-IEYYLDASILTNGLSRAFSTGAW 450
AGEL ++ +K + R +P I +L S +T G+ +FS+G W
Sbjct: 402 AGELYSFLFRLLYKKFQKTCITQI-------RNRKPDISNFLRTSGITTGILYSFSSGYW 454
Query: 451 SHPFKRTERISGIVANLGRANPLQTLV----DLRRTRQQVQYTGK---VGDARYPHPSHW 503
+R I V+ + NP +L+ LRR GK + R HPS
Sbjct: 455 G--VQRNTYIRTGVSQV--VNPKVSLLANYSSLRRVVIPESKDGKEAKTSEIRQIHPSSS 510
Query: 504 GKICFLSTPDGENCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKLADDASYSLGGKFK 562
+C + TP+G+ G V N+ V V+T I I +Q+ + G++
Sbjct: 511 FLVCPVETPEGKGVGTVLNMAVFCQVTTGISTCEIMDQIDSFGVDLKCHCTIKDPNNCLL 570
Query: 563 VFVDGDWIGVCKDS----LSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILR 618
+ ++G G + L+F+++ T + I + + IF DAGR +R
Sbjct: 571 LLINGSPYGNGHANVIHRLNFLND-----------TNISIVVNRALGVIEIFSDAGRFIR 619
Query: 619 PLLVVENMGKIKSLEGKNY-TFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKP 677
P+ ++ KI + EG+ +F+ LD+ +I + E A I L+D+
Sbjct: 620 PIF---DLDKICNFEGEIVPSFKWFLDNQLIRYIDINE----AAANSIAIELRDLSTNPN 672
Query: 678 IKFTHCELDMSFLLGLSCGIIPFANHDH-ARRVLYQSQKHSSQAIGF-PTTNPSIRVDTL 735
++ ELD + G+ GIIPF + AR Y S QAIGF P N ++ +T+
Sbjct: 673 TRYNLMELDPCGMFGIVAGIIPFPDRTQSARNCFYSSM--VKQAIGFVPCHN--LKTETV 728
Query: 736 SHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVM 795
SH L YPQ+PL T ++ +N + P NG NAIVA+ + GYNQEDS+++
Sbjct: 729 SHTLNYPQKPLVTTSFAE--------YNQLNEYP---NGINAIVAIACYTGYNQEDSIIL 777
Query: 796 NRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPF 855
N++S++RG+F + ++ A+ + K ++ R + I+ + + DG
Sbjct: 778 NKSSIDRGLFGTITYNTFTAQ-EKKNGIIEERIE---IPSNAIKIRDCNYGLVGPDGIVR 833
Query: 856 IGANLQSGDIVIGKYA-------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSL 908
+ ++ GD++I K + D S+ ++H E G V ++V + DG V +
Sbjct: 834 LRQRVKKGDVLICKVTIKNKNQDEKLVDSSVIVQHGEEGYVDRIV-DNVIDGCRIVKVVI 892
Query: 909 RQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLE 968
Q+R+P +GDKF S QKG G + QE+ PFT G+ PDI+INP+ PSR T Q++
Sbjct: 893 GQMRTPEIGDKFCSGMAQKGTCGMIFPQEDMPFTASGMTPDIIINPNCIPSRMTINQIIS 952
Query: 969 AALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRA---GFSKWGTERLYDGRTGE 1025
+GK L + R F S + E H GF G+E +Y G TGE
Sbjct: 953 TVMGK----LYTVNPNPRFRNGNSFQENSNTILKELCHHLKLNGFDPSGSEVMYSGFTGE 1008
Query: 1026 MVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLI 1085
++S IF+GPT+Y RL HM +DK+ R+ G V L RQP R + GG++FGEME+DC++
Sbjct: 1009 RIQSTIFMGPTYYHRLKHMVKDKMHARSHGQVTTLHRQPNCGRSQGGGLRFGEMEKDCIL 1068
Query: 1086 AHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVK 1145
HGA L+ER+F SD +Q+ +C+ C +++ ++ C C S ++ +
Sbjct: 1069 VHGATQFLNERMFLNSDPFQIDVCKDCGMMSSTSKK------------CHHCGS-INVKR 1115
Query: 1146 ANVPYGAKLLCQELFSMGITLKFD 1169
N+PY K L QEL MGI K D
Sbjct: 1116 CNIPYSCKNLLQELNGMGIKTKID 1139
>sp|P09845|RPOB1_METTW DNA-directed RNA polymerase subunit B' OS=Methanothermobacter
thermoautotrophicus (strain Winter) GN=rpoB1 PE=3 SV=2
Length = 604
Score = 386 bits (991), Expect = e-106, Method: Compositional matrix adjust.
Identities = 238/639 (37%), Positives = 340/639 (53%), Gaps = 73/639 (11%)
Query: 560 KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRP 619
K K++++G IG C + FV E+R KRR E+ ++ I E+ IF D GR RP
Sbjct: 3 KTKIYINGKLIGTCDNPEEFVEEIRAKRRSGEVSHEMNITHYPENHEIYIFTDPGRARRP 62
Query: 620 LLVVEN------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIE 673
L++VE+ ++ L + L+ GIIE + EEEE+ A + + ++
Sbjct: 63 LIIVEDGEPLLKEEHLEKLSSGEMEWDDLISQGIIEYLDAEEEENTYIAMSPEEVTEE-- 120
Query: 674 DKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVD 733
TH E+D S +LG+ GIIPFANH+ + R ++ + QA+G +N ++R D
Sbjct: 121 ------HTHLEIDPSTMLGICAGIIPFANHNSSPRNTMEA-GMTKQALGLYASNYNLRTD 173
Query: 734 TLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSL 793
T +H L +PQ P+ +T I D G Y RP +GQN +VAV + GYN ED+L
Sbjct: 174 TRAHLLHHPQVPIVKTRIIDVTG---YDE-----RP---SGQNFVVAVMSYEGYNMEDAL 222
Query: 794 VMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGR-------VD 846
++N+ASLERG+ RS RSY+A +RR + +I K R
Sbjct: 223 ILNKASLERGLARSSFFRSYEA--------TERRYPGGQEDRFEIPEKGVRGYRSERDYR 274
Query: 847 SLDDDGFPFIGANLQSGDIVIGK---------------YADSGADHSIKLKHTERGMVQK 891
LD+DG + SGD++IGK A+ + S+ ++H E G+V
Sbjct: 275 HLDEDGIINPETEVSSGDVLIGKTSPPRFLEEIDEFGTVAERRRETSVTVRHGEEGIVDA 334
Query: 892 VVLSSNDDGKNFSVVSLRQVRSP-CLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDI 950
V+L+ +G + + +R+ R P +GDKF+S HGQKGV+G + SQE+ PFT G+VPD+
Sbjct: 335 VLLTETVEGSRLAKIRVREQRQPEFIGDKFASRHGQKGVVGLIVSQEDMPFTEDGVVPDL 394
Query: 951 VINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGF 1010
++NPHA PSR + GQ+LE GK G+ + TPF + E L GF
Sbjct: 395 IVNPHAIPSRMSVGQVLEMLAGKAACMEGRRVD------GTPFTGEEEKDLKEALKANGF 448
Query: 1011 SKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKR 1070
G E LY+G TGE + + IFIG +YQ+L HM+ D++ R+ GPV LTRQP R R
Sbjct: 449 ESAGVETLYNGITGERIEAEIFIGVAYYQKLHHMTTDRIYARSRGPVQVLTRQPTEGRAR 508
Query: 1071 FGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVR 1130
GG++FGEMERDCLIAHGAA L ERL SD Y+ +C +C +A K+R
Sbjct: 509 EGGLRFGEMERDCLIAHGAALALKERLLDESDKYEALVCAECGMIAIY--------DKIR 560
Query: 1131 G-PYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
YC IC+ + + Y KLL EL S+ I K
Sbjct: 561 DKKYCPICEDSESF-PVEISYAFKLLLDELKSLCIFPKL 598
>sp|Q60181|RPOB1_METJA DNA-directed RNA polymerase subunit B' OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoB1 PE=3 SV=1
Length = 636
Score = 366 bits (940), Expect = e-100, Method: Compositional matrix adjust.
Identities = 233/631 (36%), Positives = 334/631 (52%), Gaps = 65/631 (10%)
Query: 563 VFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLV 622
++V+G +G V+ +R KRR+ ELP + +E +++ I DAGRI+RPL+V
Sbjct: 11 IYVNGKLVGTTDKPEELVNFIREKRRKGELPQYTTVAYNEESNDIHINTDAGRIVRPLIV 70
Query: 623 VENMGK-------IKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDK 675
VEN GK I+ L+ TF L+ G+IE + EEEE+ A E++
Sbjct: 71 VEN-GKPKLTKEHIEKLKKGEITFSDLVKEGVIEYLDAEEEENAYIALS--------EEE 121
Query: 676 KPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTL 735
K TH E+D +LG+ G+ P+ H+ A R+ + Q++G P +N R+DT
Sbjct: 122 LTEKHTHLEIDPLTILGIGAGVAPYPEHNSAPRIT-MAAAMGKQSLGIPMSNIKWRLDTR 180
Query: 736 SHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVM 795
H L YPQ P+ RT + LG RP GQN +VA+ + GYN ED++V
Sbjct: 181 GHYLHYPQVPIVRTKHQEILG--------FDKRP---AGQNFVVAIMSYEGYNMEDAIVF 229
Query: 796 NRASLERGMFRSEHIRSYKA-EVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFP 854
N+++++RG+ RS R+Y A E Q+ R D G + R L++DG
Sbjct: 230 NKSAIDRGLGRSTFFRTYDACERRYPGGQMDRFEIPDKGVRGYRSEECYRY--LEEDGIV 287
Query: 855 FIGANLQSGDIVIGKYAD---------------SGADHSIKLKHTERGMVQKVVLSSNDD 899
+ ++++ GD+++GK + D S+ ++H E G + KV+L+ +
Sbjct: 288 AVESHVKGGDVIVGKTSPPRFLEEHEITIQVKPQRRDSSVVVRHGEEGYIDKVILTETKE 347
Query: 900 GKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPS 959
G V +R +R P LGDKF+S HGQKGV+G QE+ PFT GIVPDI+INPHA PS
Sbjct: 348 GNRLVKVKVRDLRIPELGDKFASRHGQKGVMGLTVPQEDLPFTESGIVPDIIINPHAIPS 407
Query: 960 RQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLY 1019
R T GQLLE LG + AL G + T F+ + + L GF G E +Y
Sbjct: 408 RMTVGQLLE-MLGGKVGAL-----EGRRIDGTIFSGEKEWDLRKALEALGFKHHGKEVMY 461
Query: 1020 DGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEM 1079
DG+TG+ I+IG +YQ+L H+ K+ R+ GPV LTRQP R R GG++FGEM
Sbjct: 462 DGKTGKKFEVEIYIGIAYYQKLHHLVAGKIHARSRGPVQVLTRQPTEGRAREGGLRFGEM 521
Query: 1080 ERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDS 1139
ERD LI HGAA L ERL SD Y + IC KC + A ++ R ++ YC IC
Sbjct: 522 ERDVLIGHGAAMLLKERLMDESDPYDICICSKCGDFA-----ILDYKRGLK--YCPICGE 574
Query: 1140 GDDIVKAN------VPYGAKLLCQELFSMGI 1164
+++ + +PY KLL EL SM I
Sbjct: 575 IENLYSSKKIPFVRIPYAFKLLLDELKSMCI 605
>sp|Q6GZR3|RPB2_FRG3G Putative DNA-directed RNA polymerase II subunit RPB2 homolog OS=Frog
virus 3 (isolate Goorha) GN=FV3-062L PE=3 SV=1
Length = 1221
Score = 365 bits (938), Expect = e-100, Method: Compositional matrix adjust.
Identities = 348/1243 (27%), Positives = 532/1243 (42%), Gaps = 195/1243 (15%)
Query: 19 EEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGE 78
EEFL + A + N V H I S+++ + N A + + + GY
Sbjct: 80 EEFLHLYVSSANMHPSN---FVRHHIESFDDMLWNEF-PAMVAREKPVSVKGY------- 128
Query: 79 GEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKR 138
++FG V + P +G + P AR + TY S +
Sbjct: 129 ------RVKFGTVRYEPP---CPDGKPWEKLTPAMARRTDATYHSAAVCDLT-------- 171
Query: 139 VTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMK---GVEKGDCDFDHGGY 195
VT K G E + + + +IPVMV S +CW + G+C D GGY
Sbjct: 172 VTDPK---GLETVYPR---------LELCKIPVMVGSAVCWTRTEGSPLPGECPSDPGGY 219
Query: 196 FIIKGAEKVFV-----AQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDI 250
FIIKG E+V V A +Q C+ + N GW ++S N+ R V + +K +
Sbjct: 220 FIIKGKERVVVPHIRPAYDQPCVYK----NGDGWLCEFRSVNRETRQTVLV--QAKTDCR 273
Query: 251 KGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIV--NLIDFTCEDCSILNI--------- 299
+ E S+ ++ +P+ ++F ALG ++ + + L F ++ S +
Sbjct: 274 RKLE--FSLPYIKQYVPVGLVFKALGKTAREAVAMCGLGSFLGDEVSCRTVHHQSMAALL 331
Query: 300 --------------LFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNT 345
L + D + + +G KY D+ S E+ +
Sbjct: 332 MEQHASAPEDPVADLAKHVPDGRSVYSKQAEGAKQAKYADRASVEEDRNAKGSKEDYVRH 391
Query: 346 YLFPS--LHGTKQKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVH 403
L LHG A LG+MVK + A SG C +RDD NKR++ G L+ L
Sbjct: 392 VLAGEIFLHG-GDAAEHLGWMVKRMADAASGIGTCTDRDDLANKRVDATGPLIAFLLDGL 450
Query: 404 IAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERIS-- 461
+ K+ K + + + P ++ ++TN L F+TG W+ KR S
Sbjct: 451 L----KQYVKLFVKSAGCQKNLCPYTVLQNSMVMTNSLHMCFATGNWT--VKRLGPPSYV 504
Query: 462 --GIVANLGRANPLQTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGL 519
G+ L N + LRR V + GK R H SH+G +C TP+GE G+
Sbjct: 505 RVGVSQVLSNNNYGARVSHLRRIMHAVSFRGKNIRMRQLHSSHYGFLCPYETPEGEKVGI 564
Query: 520 VKNLGVTG----------LVSTSILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDW 569
V N+ +++T L F +LA + G V VDG
Sbjct: 565 VLNMAEGAGFSLETPREVVLATVRLGKGLPGFFEGAPARLAWSGA---AGSASVDVDGVL 621
Query: 570 IGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENMGKI 629
GV D + FV E R LP V + +++ E+ + GR +R +L E
Sbjct: 622 CGVTGDPVGFVREARLC-----LPG-VSVVWKKVEREIHLLGCQGRFVRRVLDPEG---- 671
Query: 630 KSLEGKNYTFQALLDHGIIEL---VGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELD 686
+ G Y + IE+ + + G+ +++ + +
Sbjct: 672 --IRGSGYDSPPAPEERDIEMDPAPSSSPSDSLPCPPGVYVCAQELSVCSLGDGEYADPP 729
Query: 687 MS-FLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRP 745
S L +IPF +H + R YQS QAIGFP N S R D H+L YPQ+
Sbjct: 730 ASEILTDAMSSVIPFYDHTQSPRNAYQSNM-GKQAIGFPAVNCSDRYDATLHRLDYPQKS 788
Query: 746 LFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMF 805
L + LG E+ +G +VA+ G+NQEDS+V+N +SL+RG+F
Sbjct: 789 LVDSRSVKRLG-----------FDEMAHGALPVVAIMTAGGFNQEDSVVLNASSLDRGLF 837
Query: 806 RSEHIRS----------YKAEV--------DNKEMQVKRRSSDDMVN---FGKIQSKI-G 843
R+ Y +EV N+E D +++ G + ++ G
Sbjct: 838 SCVTYRTVSCADKRRTKYDSEVVCLPDWGLRNREWDYDLLGDDGVIDPSCAGALARRVEG 897
Query: 844 RVDSLDDDGFPFIGAN---------LQSGDIVIGKYADSGA--------DHSIKLKHTER 886
+ + G + +G +++GK + S D S+ +K +E
Sbjct: 898 KRKAAKRPAGQRTGGGPAGLCDALWIPAGTVLVGKVSHSLGPGGNPMRRDVSLTVKQSEE 957
Query: 887 GMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGI 946
G + +V + + DGK V LR R P +GDKF+S QKG G + +QE+ PF G+
Sbjct: 958 GYLDRVTVDVDSDGKKLVKVRLRTPRHPEMGDKFASFTAQKGTCGAVLTQEDMPFDKDGV 1017
Query: 947 VPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSV-DAITEQL 1005
VPD++INPHAFPSR T LL+ G LGK AT F V I E
Sbjct: 1018 VPDLIINPHAFPSRMTVNYLLQMCFGTAACKLGK------TYDATAFEREDVVRDIAEAA 1071
Query: 1006 HRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPV 1065
AG W + L+ G TG + + IF+ P YQRL HM K+ R GP LTRQPV
Sbjct: 1072 KEAGIDCWDSV-LHSGSTGRRLPTKIFMAPCPYQRLKHMVSGKMHSRTHGPTDALTRQPV 1130
Query: 1066 ADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGG 1125
A R R GGIK GEME+ C I+HGA+ +L E ++ +SD Y++ +C++C +++ +
Sbjct: 1131 AGRSREGGIKIGEMEQWCKISHGASESLKESVYDMSDKYEVPVCKECGRISDHFE----- 1185
Query: 1126 GRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
YCR+CD+ D+ +PY K+L QEL S+GI++ F
Sbjct: 1186 -------YCRMCDA-TDMSLVKLPYTTKILFQELRSIGISIAF 1220
>sp|P41557|RPOB1_METVS DNA-directed RNA polymerase subunit B' OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rpoB1 PE=3 SV=2
Length = 611
Score = 361 bits (927), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 229/645 (35%), Positives = 330/645 (51%), Gaps = 85/645 (13%)
Query: 563 VFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLV 622
V+V+G I KD + V LR +RR +L I +E +++ I D GR +RPL+V
Sbjct: 7 VYVNGKLIDTSKDPENLVKSLRIQRRSGKLSPNTSISFNEESNDIHISTDGGRAVRPLVV 66
Query: 623 VENMGK------IKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKK 676
VEN ++ + TF+ L+ G+IE + EEEE+ A D+
Sbjct: 67 VENGFSKLTNELLEKVNNNELTFEYLVKTGVIEFLDAEEEENARIAM--------YNDEI 118
Query: 677 PIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLS 736
+ TH E+D +LG+ G+ P+ H+ A R+ + Q++G P N R+DT
Sbjct: 119 TFENTHVEIDPLVILGIGAGVAPYPEHNSAPRIT-MAAAMGKQSLGIPMANIKWRMDTRG 177
Query: 737 HQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMN 796
H L YPQ PL RT + LG RP GQN +VAV + GYN ED+ V+N
Sbjct: 178 HLLHYPQVPLVRTKHQEILG--------FDKRPA---GQNFVVAVMSYEGYNMEDAFVIN 226
Query: 797 RASLERGMFRSEHIRSYKA--------EVDNKEMQVK----RRSSDDMVNFGKIQSKIGR 844
+ASLERG+ RS RSY++ ++D E+ K R+ + N G
Sbjct: 227 KASLERGLGRSTFFRSYESFEKRYPGGQLDKFEVPEKGVRGYRAEEAYRNLG-------- 278
Query: 845 VDSLDDDGFPFIGANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMV 889
DDG + + ++SGD+++GK + D S+ ++H E G+V
Sbjct: 279 -----DDGLIDLESEVRSGDVILGKTSPPRFLEEQEITLQTKSQRRDTSVTIRHGEEGVV 333
Query: 890 QKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPD 949
V+LS +G V +R +R P GDKF+S HGQKGV+G + QE+ PFT G++PD
Sbjct: 334 DLVILSETKEGNRLGKVRVRDLRVPEFGDKFASRHGQKGVIGLVVPQEDLPFTEDGVIPD 393
Query: 950 IVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAG 1009
++INPHA PSR T GQ+LE GK +G C + T F+ A+ L G
Sbjct: 394 LIINPHAIPSRMTIGQVLEMIGGK----VGSLECRRVD--GTIFSGEGEWALRHALENYG 447
Query: 1010 FSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRK 1069
F+ G E +YDG+TG + IF+G +YQ+L H+ K+ R+ GP+ LTRQP R
Sbjct: 448 FTHSGKETMYDGKTGRKLECEIFVGVAYYQKLHHLVAGKIHARSRGPIQVLTRQPTEGRA 507
Query: 1070 RFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKV 1129
R GG++FGEMERD L+AHGAA L ERL SD ++ ++C KC +A + R +
Sbjct: 508 REGGLRFGEMERDVLVAHGAALLLKERLLDESDPHEDYVCAKCGEIA-----IFDYKRGM 562
Query: 1130 RGPYCRICDSGDD------IVKANVPYGAKLLCQELFSMGITLKF 1168
+ +C +C +D I + Y KLL EL SMGI K
Sbjct: 563 K--FCPVCGESEDIQDNRKIPPVKIAYAFKLLLDELKSMGIDPKL 605
>sp|P0CX03|RPOB1_HALSA DNA-directed RNA polymerase subunit B' OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpoB1 PE=3
SV=1
Length = 608
Score = 357 bits (915), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 223/641 (34%), Positives = 320/641 (49%), Gaps = 74/641 (11%)
Query: 562 KVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLL 621
KV+V+G +G ++ ++R RRR E+ V + + EV + DAGR RPLL
Sbjct: 8 KVYVNGSLVGTHENPEELAEQIREARRRGEVSEMVNVSVRDRTGEVIVNADAGRARRPLL 67
Query: 622 VVEN------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDK 675
VVEN ++++++ + F+ L++ G +E + EEEED + L D
Sbjct: 68 VVENGEPVVTQEEVEAVKNGDIDFEDLVEAGKVEFIDAEEEEDILVGVEEEELTTD---- 123
Query: 676 KPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTL 735
TH E+D + G+ G+IP+ H+ + R+ + Q++G P N IR DT
Sbjct: 124 ----HTHLEIDPQLIFGIGAGMIPYPEHNASPRITMGA-GMMKQSLGLPAANYRIRPDTR 178
Query: 736 SHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVM 795
H L YPQ+ + T ++ +G RP GQN +VAV + G+N ED+LVM
Sbjct: 179 QHLLHYPQKAMVNTQTTEQIGYDD--------RP---AGQNFVVAVMSYEGFNIEDALVM 227
Query: 796 NRASLERGMFRSEHIRSYKAEVDNKEMQVKRR---SSDDMVNFGKIQSKIGRVDS----L 848
N+ S+ER + RS R+Y+ E +RR +D + R + L
Sbjct: 228 NKGSVERALSRSHFFRTYEGE--------ERRYPGGQEDRFEIPGDDVRGARGEDAYTHL 279
Query: 849 DDDGFPFIGANLQSGDIVIGKYA---------DSGA-------DHSIKLKHTERGMVQKV 892
DDDG + +++GK + D G + S+ ++ E G+V V
Sbjct: 280 DDDGLVNPETKVDDSSVLLGKTSPPRFLEEPEDMGGLSPQKRRETSVTMRSGEDGVVDTV 339
Query: 893 VLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVI 952
L +DG + VS+R R P LGDKF+S HGQKGV+G L QE+ PFT +G+VPD+V+
Sbjct: 340 TLMEGEDGSKLAKVSVRDERIPELGDKFASRHGQKGVVGHLAPQEDMPFTQEGVVPDLVL 399
Query: 953 NPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSK 1012
NPHA PSR T G +LE GK G G TPF D I L GF
Sbjct: 400 NPHALPSRMTVGHVLEMLGGKA------GSLDGRSVDGTPFTGEGEDEIRGTLEDRGFKS 453
Query: 1013 WGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFG 1072
G E +Y G +GE + + IF+G FY +L HM +K+ R+ GPV LTRQP R R G
Sbjct: 454 SGKEVMYSGVSGEKIEAEIFVGTIFYHKLYHMVSNKLHARSKGPVQVLTRQPTEGRAREG 513
Query: 1073 GIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKC--KNVANVIQRVVGGGRKVR 1130
G++ GEMERD +I HGAA L ERL SD ++H+C C V N QR V
Sbjct: 514 GLRVGEMERDTVIGHGAAMVLKERLLDSSDREEIHVCGNCGMTAVENYEQRRV------- 566
Query: 1131 GPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
YC C+ D+ + Y KLL E+ ++GI + + E
Sbjct: 567 --YCPNCEEETDVHSIEMSYAFKLLLDEMKALGIAPRLELE 605
>sp|B0R8D5|RPOB1_HALS3 DNA-directed RNA polymerase subunit B' OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rpoB1 PE=1 SV=1
Length = 608
Score = 357 bits (915), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 223/641 (34%), Positives = 320/641 (49%), Gaps = 74/641 (11%)
Query: 562 KVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLL 621
KV+V+G +G ++ ++R RRR E+ V + + EV + DAGR RPLL
Sbjct: 8 KVYVNGSLVGTHENPEELAEQIREARRRGEVSEMVNVSVRDRTGEVIVNADAGRARRPLL 67
Query: 622 VVEN------MGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDK 675
VVEN ++++++ + F+ L++ G +E + EEEED + L D
Sbjct: 68 VVENGEPVVTQEEVEAVKNGDIDFEDLVEAGKVEFIDAEEEEDILVGVEEEELTTD---- 123
Query: 676 KPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTL 735
TH E+D + G+ G+IP+ H+ + R+ + Q++G P N IR DT
Sbjct: 124 ----HTHLEIDPQLIFGIGAGMIPYPEHNASPRITMGA-GMMKQSLGLPAANYRIRPDTR 178
Query: 736 SHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVM 795
H L YPQ+ + T ++ +G RP GQN +VAV + G+N ED+LVM
Sbjct: 179 QHLLHYPQKAMVNTQTTEQIGYDD--------RP---AGQNFVVAVMSYEGFNIEDALVM 227
Query: 796 NRASLERGMFRSEHIRSYKAEVDNKEMQVKRR---SSDDMVNFGKIQSKIGRVDS----L 848
N+ S+ER + RS R+Y+ E +RR +D + R + L
Sbjct: 228 NKGSVERALSRSHFFRTYEGE--------ERRYPGGQEDRFEIPGDDVRGARGEDAYTHL 279
Query: 849 DDDGFPFIGANLQSGDIVIGKYA---------DSGA-------DHSIKLKHTERGMVQKV 892
DDDG + +++GK + D G + S+ ++ E G+V V
Sbjct: 280 DDDGLVNPETKVDDSSVLLGKTSPPRFLEEPEDMGGLSPQKRRETSVTMRSGEDGVVDTV 339
Query: 893 VLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVI 952
L +DG + VS+R R P LGDKF+S HGQKGV+G L QE+ PFT +G+VPD+V+
Sbjct: 340 TLMEGEDGSKLAKVSVRDERIPELGDKFASRHGQKGVVGHLAPQEDMPFTQEGVVPDLVL 399
Query: 953 NPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSK 1012
NPHA PSR T G +LE GK G G TPF D I L GF
Sbjct: 400 NPHALPSRMTVGHVLEMLGGKA------GSLDGRSVDGTPFTGEGEDEIRGTLEDRGFKS 453
Query: 1013 WGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFG 1072
G E +Y G +GE + + IF+G FY +L HM +K+ R+ GPV LTRQP R R G
Sbjct: 454 SGKEVMYSGVSGEKIEAEIFVGTIFYHKLYHMVSNKLHARSKGPVQVLTRQPTEGRAREG 513
Query: 1073 GIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKC--KNVANVIQRVVGGGRKVR 1130
G++ GEMERD +I HGAA L ERL SD ++H+C C V N QR V
Sbjct: 514 GLRVGEMERDTVIGHGAAMVLKERLLDSSDREEIHVCGNCGMTAVENYEQRRV------- 566
Query: 1131 GPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
YC C+ D+ + Y KLL E+ ++GI + + E
Sbjct: 567 --YCPNCEEETDVHSIEMSYAFKLLLDEMKALGIAPRLELE 605
>sp|Q9H9Y6|RPA2_HUMAN DNA-directed RNA polymerase I subunit RPA2 OS=Homo sapiens GN=POLR1B
PE=1 SV=2
Length = 1135
Score = 354 bits (908), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 341/1187 (28%), Positives = 506/1187 (42%), Gaps = 145/1187 (12%)
Query: 39 LVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSF 98
L + S+N + GL A + P ++ + K E S + P+
Sbjct: 38 LTRAHVESFNYAVHEGLGLAVQAI------PPFEFAFKDE----RISFTILDAVISPPTV 87
Query: 99 FAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLS 158
G E +++P R + TY ++ + + V G + I K+ L
Sbjct: 88 PKGTICKEANVYPAECRGRRSTYRGKLTADINWAV------------NGISKGIIKQFL- 134
Query: 159 DETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF----VAQ 208
G +P+MVKS LC ++ +E + + GGYFII G EKV + +
Sbjct: 135 --------GYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186
Query: 209 EQICLKRL---WVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTE 265
+ + W + G+T Y R V+M+ ++ G +L+ +
Sbjct: 187 RNFPIAMIRPKWKTRGPGYT-QYGVSMHCVREEHSAVNMN-LHYLENGTVMLNFIYRKEL 244
Query: 266 --IPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHD--ADNKCDEFRKGRNAL 321
+P+ AL SD +I + ED S L + + + C ++ N L
Sbjct: 245 FFLPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYL 304
Query: 322 K--YVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCD 379
+ KL +P ++ E N + L +K L M + L G D
Sbjct: 305 GECFRVKLNVPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMED 364
Query: 380 NRDDFRNKRLELAGELLERELK-------VHIAHARKRMAKALQRDLYGDRTVRPIEYYL 432
N D N+ + G+L LK V I A + A+ + D +R +
Sbjct: 365 NPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTMGI 424
Query: 433 DASILTNGLSRAFSTGAW-SHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTG- 490
D LT F+TG S + SG+ + N ++ L R + +
Sbjct: 425 D---LTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKM 481
Query: 491 KVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSIL--EPIFEQLFNSGMEK 548
+ R P WG +C + TPDGE CGL+ +L V T + I L N G+
Sbjct: 482 RTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASIPALLCNLGVTP 541
Query: 549 L--ADDASYS------LGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEI-- 598
+ A SYS L G +VD D DSL LR KR +P +E+
Sbjct: 542 IDGAPHRSYSECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKR----IPPWMEVVL 597
Query: 599 ----KRDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTE 654
+ L + +F R++RP V+N+ K EL+GT
Sbjct: 598 IPMTGKPSLYPGLFLFTTPCRLVRP---VQNLALGKE-----------------ELIGTM 637
Query: 655 EEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQ 714
E+ A + + TH EL LL + IPF++H+ + R +YQ Q
Sbjct: 638 EQIFMNVAIFEDEVFAGVT-------THQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQ 690
Query: 715 KHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNG 774
Q +GFP R D ++L PQ PL R + D Y G
Sbjct: 691 M-GKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPI-----------G 738
Query: 775 QNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVN 834
NAIVAV + GY+ ED++++N+AS ERG H YK+E + ++K+ D +
Sbjct: 739 TNAIVAVISYTGYDMEDAMIVNKASWERGF---AHGSVYKSEFIDLSEKIKQ--GDSSLV 793
Query: 835 FGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKY-ADSGADHSIKLKHTERGMVQKVV 893
FG + LDDDG PFIGA LQ GD ++G + K E +V +
Sbjct: 794 FGIKPGDPRVLQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIK 853
Query: 894 LSSNDDGK---NFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDI 950
+ SND G +++R R+P +GDKF+S HGQKG+L L E+ PFT G+VPDI
Sbjct: 854 VCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDI 913
Query: 951 VINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFA----TPSVDAITEQLH 1006
+ NPH FPSR T G L+E+ GK A G+C ATPF +++ E L
Sbjct: 914 LFNPHGFPSRMTIGMLIESMAGKSAAL--HGLCHD----ATPFIFSEENSALEYFGEMLK 967
Query: 1007 RAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVA 1066
AG++ +GTERLY G +G + + IFIG +YQRL HM DK + R TG +T QP+
Sbjct: 968 AAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIG 1027
Query: 1067 DRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQR---VV 1123
R GGI+FGEMERD L+AHG + LH+RLF SD H+C KC ++ + +
Sbjct: 1028 GRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPS 1087
Query: 1124 GGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
+ R C +C D I +VPY + EL +M I +K D
Sbjct: 1088 WSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1134
>sp|Q91F97|RPB2_IIV6 Probable DNA-directed RNA polymerase II subunit RPB2 homolog
OS=Invertebrate iridescent virus 6 GN=IIV6-428L PE=3 SV=1
Length = 1193
Score = 349 bits (895), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 338/1253 (26%), Positives = 555/1253 (44%), Gaps = 213/1253 (16%)
Query: 33 FFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETI---------------VEPGYDPSKKG 77
+F GLV HQ+ +++ FI + ++ D I VE GY+
Sbjct: 32 YFQTSGLVKHQLETFDHFIFHDIKTIIDDEASIIFNGKRSLSSQIKNGAVEEGYN----- 86
Query: 78 EGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQK 137
E ++F V + KP+ + ++P AR + +TY S + V V V
Sbjct: 87 RKESEKIMLKFENVFVAKPTI-TNDDTTVRPLYPAEARQKMITYDSFVFVDVLEYVLRD- 144
Query: 138 RVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM------KGVEKGDCDFD 191
++E+L ++ + I +IP+M++S C + + +E G+ D
Sbjct: 145 ---------------EEEILVNKHLRVQIAKIPIMLRSSTCNLYNCTPQERIELGEGIED 189
Query: 192 HGGYFIIKGAEKVFVAQ------EQICLKRLWVSNSMGWTVAYKSENKRNRLIVRL---- 241
GGYFII G E+V + Q IC + + S + + SE + ++++L
Sbjct: 190 PGGYFIINGNERVLIGQLRNAYNRSICFRNKF-SEPLTCDMRSMSEETGHSVLIQLRLND 248
Query: 242 ------VDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSS--------------DK 281
++ K + K G L + T IPI +F L V++ DK
Sbjct: 249 SPISQKRNLKKLD--KNGTIDLIISQTKTPIPISFVFRVLKVATIDKLKFLIGDEEELDK 306
Query: 282 EIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPP--GEST 339
++ +++ T D I + + I D+ +E + K + + I+ FP ST
Sbjct: 307 YLIKIVEET-SDGGIFDDMEIEISQEDDFNEENEESTEK-KKITQFIEQDMFPHLGVSST 364
Query: 340 EECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYS--------GRRKCD------------ 379
E +KA LG MV+ LL +R D
Sbjct: 365 HE--------------EKAILLGKMVRKLLLVNETSINANKFAQRANDETNKTNKTNKMY 410
Query: 380 ----NRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDAS 435
+RD++ NKR+E AG L ++ K L++ R ++ +
Sbjct: 411 YTQEDRDNYSNKRVETAGVLCFELFRMLYKRFIKSNINQLEK-----RNRVEMDVISKNA 465
Query: 436 ILTNGLSRAFSTGAWSHPFKRTERISGIVANL--GRANPLQTLVDLRRTRQQVQYTGKVG 493
+T GL +FSTG W ++ I VA + + + LRR + GK
Sbjct: 466 FITTGLHFSFSTGNWG--VQKNNYIRTGVAQIPQNKVSFGAFFSYLRRFVIPMGKEGKNT 523
Query: 494 DARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLV----STSILEPIFE---QLFNSGM 546
R HPS C TP+G+ G+ N + V S+ +++ I E Q F
Sbjct: 524 KIRQIHPSSIFFACPSETPEGQFVGITLNFSMLAEVSIRTSSVVIKEIIEASHQAFKHVH 583
Query: 547 EKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSE 606
E ++ L +FV+G G+ +S++R + + L V E
Sbjct: 584 EISLEENKQFLSKLSIIFVNGGICGLTSKPQQLLSDVRDLKLKHCLKYDVSAVFIPELKE 643
Query: 607 VRIFMDAGRILRPLLVVENMGKIKSLEGKNY-TFQALLDHGIIELVGTEEEEDCCTAWGI 665
V I DAGR +RP+L N+ IK+ + +FQ L++G + E E A +
Sbjct: 644 VHISSDAGRFIRPVL---NLQSIKTNGNVMWNSFQNCLENGHVVYKDAYEIEQSQIAINL 700
Query: 666 KYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIG-FP 724
+ L + P + E+ S +LG+ IPFA H + R+ YQS + QAIG P
Sbjct: 701 QDL-----SRYPTVYDSMEIHASCMLGVMAAQIPFAEHTQSPRLCYQSS-MAKQAIGNIP 754
Query: 725 TTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVH 784
+ + ++ D + + Y QRPL T I++ N P NG NA+VAV ++
Sbjct: 755 SHH--VKSDNTTRVMDYVQRPLVTTQIAEM--------NRFNDFP---NGLNAMVAVAIY 801
Query: 785 LGYNQEDSLVMNRASLERGMFRSEHIRSYKA-EVDNKEMQVKRR------SSDDMVNFGK 837
G+NQEDS+++N+AS++RGMF H+ +YK V+ +++ V + S M N+
Sbjct: 802 TGFNQEDSIILNKASIDRGMF---HVVTYKTIIVEERKIGVNEKICMPVASVRRMNNYSL 858
Query: 838 IQSKIGRVDSLDDDGFPFIG-----ANLQSGDIVIGKY--------ADSGADHSIKLKHT 884
++ D+ P+ G + ++ D+++GK DHS + +
Sbjct: 859 LE---------DNPESPYFGVVKVKSFVKRNDVLVGKVITKISKDGTRQETDHSTIVSIS 909
Query: 885 ERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQ 944
E G V +++ +S F +V +Q R P +GDKF S QKG +G + + + PF
Sbjct: 910 EEGKVDRIIRTSKKGILMFKIVIAQQKR-PEIGDKFCSAMAQKGTVGMILEEVDMPFMED 968
Query: 945 GIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVD----- 999
G +PD++INPH PSR T Q++ + +GK A + A+PF S++
Sbjct: 969 GSIPDMIINPHCLPSRMTINQIMASIMGKTCCAKNETFGD-----ASPFQESSLEKPQDK 1023
Query: 1000 --AITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTG-- 1055
A+ ++L G++ GTE + G G+ +R+ IF GP +Y RL HM DK+ R +
Sbjct: 1024 IHALCKELEECGYNYNGTETMMCGWNGKKLRAEIFFGPVYYHRLTHMVSDKIFSRASTNQ 1083
Query: 1056 PVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNV 1115
H +TRQP+ R GG++ GEME+DC++ HG + LHE++F SD + +++C CK+
Sbjct: 1084 KRHAITRQPLNGRANEGGLRIGEMEKDCMLVHGISKFLHEKMFDQSDKFIINLCVPCKSY 1143
Query: 1116 ANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
V+ + G +C C+ G DIVK N P+ AKL QEL +MG L+F
Sbjct: 1144 FKVV-------KTQNGFFCSGCN-GIDIVKFNCPFAAKLFFQELTAMGQKLEF 1188
>sp|Q54IZ9|RPC2_DICDI DNA-directed RNA polymerase III subunit rpc2 OS=Dictyostelium
discoideum GN=polr3b PE=3 SV=1
Length = 1608
Score = 348 bits (894), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 239/679 (35%), Positives = 338/679 (49%), Gaps = 76/679 (11%)
Query: 516 NCGLVKNLGVTGLVSTSILE-PIFEQLFNSGMEKLADDASYSLGGK--FKVFVDGDWIGV 572
NCGLVKN + V+T E P+ +N G++ + L + + V ++G IG+
Sbjct: 969 NCGLVKNFALMSHVTTDDSEGPLLRLAYNLGVQDILLVTGEELNSRNAYLVLLNGQIIGI 1028
Query: 573 CKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENM------ 626
FV+ LR+ RR + V I +++ Q + + D GR+ RP+++V++
Sbjct: 1029 HNSPDYFVTTLRKMRRAGRIREFVSICKNKAQQTISVACDGGRLCRPVIIVDDQRPRLTQ 1088
Query: 627 GKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELD 686
I+ L+ TF + GIIE + EE D AW E TH E++
Sbjct: 1089 EHIEDLKDGLRTFDDFIREGIIEYLDVNEENDSFLAWR--------EAAIQPWTTHLEIE 1140
Query: 687 MSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPL 746
+LG G+IP+ +H+ + R YQ QAIG N R+DTL + L + QRPL
Sbjct: 1141 PFTMLGCVAGLIPYPHHNQSPRNTYQC-AMGKQAIGAIAYNQLTRIDTLLYLLVHTQRPL 1199
Query: 747 FRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFR 806
+T D L + LP G NA VAV + GY+ ED+LVMN+ASL+RG R
Sbjct: 1200 CQTRTIDLLNW------YKLPA-----GHNATVAVMSYSGYDIEDALVMNKASLDRGFGR 1248
Query: 807 ----SEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQS 862
+ + S K ++ ++ + +D+ Q K G +DS DG G Q
Sbjct: 1249 CIVLKKQVTSIKKHGNDTSDRIFPPTPNDLR-----QPKYGLLDS---DGIAKPGELAQK 1300
Query: 863 GDIVIGKYA---------------DSGADHS-IKLKHTERGMVQKVVLSSNDDGKNFSVV 906
G I++ KY+ DS S + K+ + KV+L+S DD + +
Sbjct: 1301 GQILVNKYSPLNTIDATPNPELIPDSAYKSSYMGYKYDNPAFIDKVLLTSGDDEQLLIKM 1360
Query: 907 SLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQL 966
+R R P LGDKFSS HGQKGV G + QE+ PF+ GI PDI++NPH FPSR T G++
Sbjct: 1361 LMRSTRRPELGDKFSSRHGQKGVCGIIVKQEDMPFSDLGICPDIIMNPHGFPSRMTIGKM 1420
Query: 967 LEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEM 1026
+E GK G+ SG + T F V+ I++ L GFS G + + G TGE
Sbjct: 1421 IELLAGKA------GVLSGKFGFGTCFGGDRVENISKVLISKGFSYGGKDYVTSGVTGEP 1474
Query: 1027 VRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIA 1086
+ IF GP FYQ+L HM DK+ R GP LTRQP R R GG++ GEMERDCLI
Sbjct: 1475 LACFIFFGPIFYQKLKHMVMDKMHARARGPTVTLTRQPTEGRARGGGLRLGEMERDCLIG 1534
Query: 1087 HGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKA 1146
+GA+A + ERL SD + ++ C+ C G G YC+ C S DI
Sbjct: 1535 YGASALIMERLMISSDRFTVYACKNC------------GFLGYEG-YCQYCKSSVDISTI 1581
Query: 1147 NVPYGAKLLCQELFSMGIT 1165
+PY KLL QEL +M I
Sbjct: 1582 QIPYACKLLFQELQAMNIV 1600
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 138/523 (26%), Positives = 227/523 (43%), Gaps = 90/523 (17%)
Query: 28 KAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMR 87
K +F GLV I+S+N FI ++K + E DPS +R
Sbjct: 41 KLVPAFMKCRGLVKQHIDSFNFFINVEMKKIVKANERLTAE--NDPS---------YFVR 89
Query: 88 FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
F + + P+ N D + P+ RL++MTYS+ + V +++ T
Sbjct: 90 FTDINVGSPTSTEDNL-DSVQLTPQRCRLRDMTYSAPIFVNIEY--------------TR 134
Query: 148 REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWM--KGVEK----GDCDFDHGGYFIIKGA 201
+Q I K ++ IG IP+M++S C + K E+ G+C D GGYFI++G
Sbjct: 135 NKQIISKR-------DVHIGNIPIMLRSSNCVLSKKTPEQMAALGECPMDPGGYFIVRGQ 187
Query: 202 EKVFVAQEQICLKRLWVS-NSMGW---TVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVL 257
EKV + EQ+ R+ + +S G +V + +++R V L K + L
Sbjct: 188 EKVILNHEQLSKNRIIIEMDSKGLPSASVTSSTHERKSRTGVTL---------KNEKLYL 238
Query: 258 SVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKG 317
+IP+ I+ +GV +D+E+ L+ D LN + S+ + KC
Sbjct: 239 KHNTFGEDIPVAIVLKGMGVETDQEMAQLVG---SDDVFLNAITPSLEEC-QKCG-VHTA 293
Query: 318 RNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGT------------KQKARFLGYMV 365
AL Y+ IK P G ++ + L G + K +L M+
Sbjct: 294 AQALDYLGSRIKVFRRPYGVQNKKTKSEEARDILAGVVLNHVPVRRYNFRLKVIYLSLMI 353
Query: 366 KCLLQAYSGRRKCDNRDDFRNKRLELAGELL-----------ERELKVHIAHARKRMAKA 414
+ ++ A + D++D + NKR+EL+G+L+ + ELK + A + +A
Sbjct: 354 RRIIMASKDKSCLDDKDYYGNKRIELSGQLISLLFEDCFKKFQSELKKSVDQAIAKANRA 413
Query: 415 LQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQ 474
DL + +R +TNG + A S+G W+ R ER SG+ L R + +
Sbjct: 414 ENLDL--PKLIR-------TDTITNGFTHAISSGQWNLKRFRMER-SGVSQVLSRLSYIS 463
Query: 475 TLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENC 517
+ + R + Q + T KV R PS WG +C TP+GE C
Sbjct: 464 CMGMMTRIQSQFEKTRKVAGPRSLQPSQWGMLCPSDTPEGEAC 506
>sp|Q5REE8|RPA2_PONAB DNA-directed RNA polymerase I subunit RPA2 OS=Pongo abelii GN=POLR1B
PE=2 SV=1
Length = 1136
Score = 348 bits (892), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 338/1184 (28%), Positives = 502/1184 (42%), Gaps = 138/1184 (11%)
Query: 39 LVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSF 98
L + S+N + GL A + P ++ + K E S + P+
Sbjct: 38 LTRAHVESFNYAVHEGLGLAVQAI------PPFEFAFKDE----RISFTILDAVISPPTV 87
Query: 99 FAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLS 158
G E ++P R + TY ++ + + V G + I K+ L
Sbjct: 88 PKGTICKEVSVYPAECRGRRCTYRGKLTADISWAV------------NGISKGIIKQFL- 134
Query: 159 DETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVA----- 207
G +P+MVKS LC + +E + + GGYFII G EKV
Sbjct: 135 --------GYVPIMVKSKLCNLYNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPR 186
Query: 208 -QEQICLKRL-WVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTE 265
I + R W + G+T Y R V+M+ ++ G +L+ +
Sbjct: 187 RNFPIAMVRPKWKTRGPGYT-HYGVSMHCVREEHSAVNMN-LHYLENGTVMLNFIYRKEL 244
Query: 266 --IPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHD--ADNKCDEFRKGRNAL 321
+P+ AL SD +I + ED S L + + + C ++ N L
Sbjct: 245 FFLPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQVLNYL 304
Query: 322 K--YVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCD 379
+ KL +P ++ E N + L +K L M + L G D
Sbjct: 305 GECFRVKLNVPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMED 364
Query: 380 NRDDFRNKRLELAGELLERELK-------VHIAHARKRMAKALQRDLYGDRTVRPIEYYL 432
N D N+ + G+L LK V I A + A+ + D +R +
Sbjct: 365 NPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFTMGI 424
Query: 433 DASILTNGLSRAFSTGAW-SHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTG- 490
D LT F+TG S + SG+ + N ++ L R + +
Sbjct: 425 D---LTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKM 481
Query: 491 KVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSIL--EPIFEQLFNSGMEK 548
+ R P WG +C + TPDGE CGL+ +L V T + I L N G+
Sbjct: 482 RTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASIPALLCNLGVTP 541
Query: 549 LADDASYSLGGKFKVFVDGDWIGVCKDSLS--FVSELRRKR--RRKELPTQVEI------ 598
+ S + V +DG +G L+ LR + R K +P E+
Sbjct: 542 IDGAPHRSYSECYPVLLDGVMVGWVDKELAPGIADSLRHFKVLREKRIPPWTEVVLIPMT 601
Query: 599 KRDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEED 658
+ L + +F R++RP V+N L+ G EL+GT E+
Sbjct: 602 GKPSLYPGLFLFTTPCRLVRP---VQN-----------------LELGKEELIGTMEQIF 641
Query: 659 CCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSS 718
A + + TH EL LL + IPF++H+ + R +YQ Q
Sbjct: 642 MNVAIFEDEVFAGVT-------THQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQM-GK 693
Query: 719 QAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAI 778
Q +GFP R D ++L PQ PL R + D Y G NAI
Sbjct: 694 QTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYP-----------IGTNAI 742
Query: 779 VAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKI 838
VAV + GY+ ED++++N+AS ERG H YK+E + ++K+ D + FG
Sbjct: 743 VAVISYTGYDMEDAMIVNKASWERGF---AHGSVYKSEFIDLSEKIKQ--GDSSLVFGMK 797
Query: 839 QSKIGRVDSLDDDGFPFIGANLQSGDIVIGKY-ADSGADHSIKLKHTERGMVQKVVLSSN 897
+ LDDDG PFIGA LQ GD ++G + K E +V + + SN
Sbjct: 798 PGDPRILQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSN 857
Query: 898 DDGK---NFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINP 954
D G +++R R+P +GDKF+S HGQKG+L L E+ PFT G+VPDI+ NP
Sbjct: 858 DTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNP 917
Query: 955 HAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFA----TPSVDAITEQLHRAGF 1010
H FPSR T G L+E+ GK A G+C ATPF +++ E L AG+
Sbjct: 918 HGFPSRMTIGMLIESMAGKSAAL--HGLCHD----ATPFIFSEENSALEYFGEMLKAAGY 971
Query: 1011 SKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKR 1070
+ +GTERLY G +G + + IFIG +YQRL HM DK + R TG +T QP+ R
Sbjct: 972 NFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNV 1031
Query: 1071 FGGIKFGEMERDCLIAHGAAAN-LHERLFTLSDSYQMHICRKCKNVANVIQR---VVGGG 1126
GGI+FGEMERD L+AHG + LH+RLF SD H+C KC ++ + +
Sbjct: 1032 QGGIRFGEMERDALLAHGTSFFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPPPSWSA 1091
Query: 1127 RKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
+ R C +C+ D I +VPY + EL +M I +K D
Sbjct: 1092 MRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1135
>sp|P70700|RPA2_MOUSE DNA-directed RNA polymerase I subunit RPA2 OS=Mus musculus GN=Polr1b
PE=2 SV=2
Length = 1135
Score = 347 bits (891), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 341/1193 (28%), Positives = 507/1193 (42%), Gaps = 157/1193 (13%)
Query: 39 LVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSF 98
L ++S+N GL A + P ++ + K E S+ + PS
Sbjct: 38 LTRAHVDSFNYAALEGLSHAVQAI------PPFEFAFKDE----RISLTIVDAVISPPSV 87
Query: 99 FAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLS 158
G + +++P R + TY R+ + + V G + I K+ L
Sbjct: 88 PKGTICKDLNVYPAECRGRKSTYRGRLTADISWAV------------NGVPKGIIKQFL- 134
Query: 159 DETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF----VAQ 208
G +P+MVKS LC + +E + + GGYFII G EKV V +
Sbjct: 135 --------GYVPIMVKSKLCNLYNLPPRVLIEHHEEAEEMGGYFIINGIEKVIRMLIVPR 186
Query: 209 EQICLKRL---WVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTE 265
+ + W S +G+T + + R V+M+ ++ G +L+ +
Sbjct: 187 RNFPIAMVRPKWKSRGLGYT-QFGVSMRCVREEHSAVNMN-LHYVENGTVMLNFIYRKEL 244
Query: 266 --IPIWILFFALGVSSDKEIVN-LIDFTCEDCSILNILFASIHDA-DNKCDEFRKGRNAL 321
+P+ AL SD +I LI ED N + + + C ++ N L
Sbjct: 245 FFLPLGFALKALVSFSDYQIFQELIKGKEEDSFFRNSVSQMLRIVIEEGCHSQKQVLNYL 304
Query: 322 K--YVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRKCD 379
+ KL +P E+ E +N + L K L M + L G D
Sbjct: 305 GECFRVKLSLPDWYPNVEAAEFLLNQCICIHLQSNTDKFYLLCLMTRKLFALARGECMDD 364
Query: 380 NRDDFRNKRLELAGELLERELKVHIAH--------ARKRMAKA---------LQRDLYGD 422
N D N+ + G+L LK + + KR KA ++ G
Sbjct: 365 NPDSLVNQEVLSPGQLFLMFLKEKMENWLVSIKIVLDKRAQKANVSINNENLMKIFSMGT 424
Query: 423 RTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRT 482
RP EY L L + F SG+ + N L+ L R
Sbjct: 425 ELTRPFEYLLATGNLRSKTGLGFLQD------------SGLCVVADKLNFLRYLSHFRCV 472
Query: 483 RQQVQYTG-KVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSIL--EPIFE 539
+ + + R P WG +C + TPDG CGL+ +L V T + I
Sbjct: 473 HRGAAFAKMRTTTVRRLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVVTKFVYTASIPA 532
Query: 540 QLFNSGMEKLADDASYSLGGKFKVFVDGDWIG-VCKDSLSFVSE-LRRKR--RRKELPTQ 595
L G+ + + V +DG +G V KD V++ LRR + R K +P
Sbjct: 533 LLCGLGVTPVDTAPCRPYSDCYPVLLDGVMVGWVDKDLAPEVADTLRRFKVLREKRIPPW 592
Query: 596 VEIK------RDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIE 649
+E+ + L + +F R++RP V+N L+ G E
Sbjct: 593 MEVALIPMTGKPSLYPGLFLFTTPCRLVRP---VQN-----------------LELGREE 632
Query: 650 LVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRV 709
L+GT E+ A + I TH EL LL + IPF++H+ + R
Sbjct: 633 LIGTMEQLFMNVAIFEDEVFGGIS-------THQELFPHSLLSVIANFIPFSDHNQSPRN 685
Query: 710 LYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRP 769
+YQ Q Q +GFP R D ++L PQ PL R + D Y
Sbjct: 686 MYQCQM-GKQTMGFPLLTYQNRSDNKLYRLQTPQSPLVRPCMYDFYDMDNYPI------- 737
Query: 770 ELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAE-VDNKEMQVKRRS 828
G NAIVAV + GY+ ED++++N+AS ERG H YK+E +D E K +
Sbjct: 738 ----GTNAIVAVISYTGYDMEDAMIVNKASWERGF---AHGSVYKSEFIDLSE---KFKQ 787
Query: 829 SDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKY-ADSGADHSIKLKHTERG 887
+D + FG + LDDDG PFIGA L+ GD ++G + K E
Sbjct: 788 GEDNLVFGVKPGDPRVMQKLDDDGLPFIGAKLEYGDPYYSYLNLNTGEGFVVYYKSKENC 847
Query: 888 MVQKVVLSSNDDGK---NFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQ 944
+V + + SND G +++R R+P +GDKF+S HGQKG+L L E+ PFT
Sbjct: 848 VVDNIKVCSNDMGSGKFKCICITVRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTES 907
Query: 945 GIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFA----TPSVDA 1000
G++PDI+ NPH FPSR T G L+E+ GK A G+C ATPF +++
Sbjct: 908 GMMPDILFNPHGFPSRMTIGMLIESMAGKSAAL--HGLCHD----ATPFIFSEENSALEY 961
Query: 1001 ITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPL 1060
E L AG++ +GTERLY G +G + + IFIG +YQRL HM DK + R TG +
Sbjct: 962 FGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKV 1021
Query: 1061 TRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQ 1120
T QP+ R GGI+FGEMERD L+AHG + LH+RLF SD H+C +C ++ + +
Sbjct: 1022 TNQPLGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHMCVECGSLLSPLL 1081
Query: 1121 R---VVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDT 1170
+ R C +C D I +VPY + EL +M I +K D
Sbjct: 1082 EKPPPSWSAMRNRKYNCTVCGRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1134
>sp|Q54BM1|RPA2_DICDI DNA-directed RNA polymerase I subunit rpa2 OS=Dictyostelium
discoideum GN=polr1b PE=3 SV=1
Length = 1130
Score = 341 bits (875), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 324/1197 (27%), Positives = 533/1197 (44%), Gaps = 147/1197 (12%)
Query: 48 NEFIKNGLQKAFDSF------GETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAG 101
+E +K+ +Q DSF G +V +P +Y +RF + L +P+
Sbjct: 2 SEELKSLIQPHIDSFDFFTDHGIDLVLKDSEPLYFEHNSTQY-KIRFTDLKLSRPT--RN 58
Query: 102 NGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGRE-QYIQKEVLSDE 160
E ++P +R TY++ K + + D+ G E Y ++E
Sbjct: 59 IVEKEIKLYPNESRETGTTYNAPFKGAIGLYEVNEM----DEMDDGTEVDYNKQE--PTH 112
Query: 161 TTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF------VAQ 208
T + +GR+P+MVKS C + G +E + + + GGYFI+ G EKV A
Sbjct: 113 TFEVDLGRLPIMVKSRYCHLNGMSPEKLIESREEELEQGGYFIVNGNEKVVRMLVMTKAN 172
Query: 209 EQICLKR-LWVSNSMGWTVAYKSENKRNRLIVRLV--DMSKFED----IKGGEKVLSVYF 261
+ L R W + G+T +N + +R V D S + I G+ L +
Sbjct: 173 HPVALHRKAWTNRGPGYT--------KNGITIRCVRPDRSSITNNLHYINDGQTTLRFLY 224
Query: 262 LSTE--IPIWILFFALGVSSDKEIV-NLIDFTCEDCSILNILFASIHDADNKCDEFRKGR 318
E +P +L AL +++KEI N++ E+ + + + S+ + K +
Sbjct: 225 RRQEFFLPATLLLKALKDTTEKEIYENIVQGDNENTFLTDRVELSLRE--QKINNINTQE 282
Query: 319 NALKYVDKLIKG-TTFPPGESTEEC----MNTYLFPSLHGTKQKARFLGYMVKCLLQAYS 373
L Y+ + T FPP S + +N ++F L K L M++ L
Sbjct: 283 EVLDYIGSRFRARTQFPPSFSNIKIGRWFINQFVFVHLPNYNDKYNLLILMIQKLYAMVG 342
Query: 374 GRRKCDNRDDFRNKRLELAGEL----LERELKVHIAHARKRMAKALQ-RDLYGDRTVRPI 428
G+ DN D + + LAG + L+ +L ++ + + K+ + + GD+ +
Sbjct: 343 GKCGTDNIDSPAFQEVLLAGHIYGMILKEKLTEYLESTKSFVLKSFEDKKKSGDKLPDAL 402
Query: 429 EYYLDASI-LTNGLSRAFSTGAW-SHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQV 486
+ LD + + + S +TG S ++ SG + N L+ + R +
Sbjct: 403 KKVLDKNFKIADRFSYFLATGNLRSSSGIDLQQTSGFCVIADKLNFLRFISHFRSIHRGA 462
Query: 487 QY-TGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQ---- 540
+ T K R P WG C + TPDG CGL+ +L LV+ + +P ++
Sbjct: 463 FFATMKTTAIRKLMPESWGFFCPVHTPDGAPCGLLNHLSSNCLVTVDAAQDPTVQKAQTL 522
Query: 541 ----LFNSGMEKLADDASYSLGGKFKVFVDGDWIG-----VCKDSLSFVSELRRKRRRKE 591
L GM + D S + +DG +G ++ + + LR
Sbjct: 523 LPSFLAAHGMLPI-DMVSVYQHQYLTITLDGRVLGKIEPKAGEEMVKMLRYLRSMGNEPS 581
Query: 592 LPTQVEIK-------RDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLD 644
+P +EI + S + +F R +RP++ + + G+N
Sbjct: 582 IPKTMEISYAPPTNVENGQYSGISLFTTGARFMRPVVNLTS--------GQN-------- 625
Query: 645 HGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHD 704
EL+G +E+ A ++K + TH E + + L + PF++++
Sbjct: 626 ----ELIGPQEQLYMEIAVVPHEVIKGVT-------THIETSPTAMFSLLANLTPFSDYN 674
Query: 705 HARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNH 764
+ R +YQ Q + Q +G P + R D +++ Q+P+ T Y H
Sbjct: 675 QSPRNMYQCQM-AKQTMGTPLHSYPFRTDNKLYKVQNVQKPIVHTKNQFKFRCNDYPH-- 731
Query: 765 ILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQV 824
G NA++AV + GY+ ED++++N+++ ERG H YK E + + +
Sbjct: 732 ---------GCNAVIAVISNTGYDMEDAMIINKSAYERGF---GHGSVYKNEYIDLDQGL 779
Query: 825 KRRSSDDMVNFGKIQSKIGRVDS-LDDDGFPFIGANLQSGDIVIGKYADSGADHSIK-LK 882
R FG+ + + +D +D DG PF+G ++ G+ S K K
Sbjct: 780 SRFEQKKTF-FGRPNTVVDELDKFIDTDGLPFVGRLIKPGEPYYTYIRPSDGRQVTKDYK 838
Query: 883 HTERGMVQKVVL------SSNDDGK-NFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLES 935
E ++ V + ++ D K N V LR R+P +GDKFSS HGQKGVL L
Sbjct: 839 GKEEAYIEDVRIIFGPNGATRDPSKINNICVKLRFNRNPVIGDKFSSRHGQKGVLSQLWP 898
Query: 936 QENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFA- 994
+ N PFT G+ PD++INP+AFPSR T G L+E GK A GK + AT F
Sbjct: 899 EINMPFTESGMKPDVIINPNAFPSRMTIGMLVEILAGKAGAIHGKF------QDATAFQF 952
Query: 995 ---TPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKF 1051
++D EQL +AGF+++G E++Y G TG+ IF G +YQRL HM +DK +
Sbjct: 953 DENNTAIDFFGEQLAKAGFNRFGNEQMYSGTTGKEFECEIFFGVCYYQRLRHMVKDKYQV 1012
Query: 1052 RNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRK 1111
R G V+ LTRQP+ RK GGI+FGEMERD L+AHGA+ L++RL SD ++ +C+
Sbjct: 1013 RALGKVNALTRQPIKGRKVGGGIRFGEMERDSLLAHGASFCLNDRLMKSSDFAKIKVCKL 1072
Query: 1112 CKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
C + + + + V C+ C S D I ++PY L EL ++ IT+K
Sbjct: 1073 CGSTLTIYSKKDYSNQTVSE--CKSCKSSDSIATISIPYVFTYLVAELAAVNITMKL 1127
>sp|O28392|RPOB1_ARCFU DNA-directed RNA polymerase subunit B' OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rpoB1 PE=4 SV=1
Length = 604
Score = 335 bits (858), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 224/634 (35%), Positives = 324/634 (51%), Gaps = 63/634 (9%)
Query: 560 KFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRP 619
K +V+++G +G + +++R RR+ + QV + +EVRI DAGR RP
Sbjct: 3 KCRVYINGALVGFHDNGEELANKIRELRRKGRISNQVNVVYYPDSNEVRINTDAGRARRP 62
Query: 620 LLVVENMGK-------IKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDI 672
L+VV++ GK I+ ++ T + L+ G+IE + EEEE+ A
Sbjct: 63 LIVVKD-GKPLVTPEHIEKIKKGELTIEDLVRQGLIEYLDAEEEENAYVAV--------Y 113
Query: 673 EDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRV 732
E + + TH ELD S ++G+ G IP+A H+ + R + Q++G P +N + R
Sbjct: 114 EHELTPEHTHLELDPSLIVGICTGSIPYAEHNASPRNTMGAAM-IKQSLGIPYSNLAWRT 172
Query: 733 DTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDS 792
DT H + +PQ P+ T D + + RP GQN +VAV + GYN ED+
Sbjct: 173 DTRGHLMQHPQVPIVTT---DTQVEIKFDE-----RPA---GQNFVVAVLSYEGYNIEDA 221
Query: 793 LVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDS---LD 849
L+MN+ S+ERG+ RS R+Y++E EM+ D G S ++ LD
Sbjct: 222 LIMNKGSVERGLGRSFFYRTYESE----EMRYPGGQEDKFEIPGADISGFRGAEAYAHLD 277
Query: 850 DDGFPFIGANLQSGDIVIGKYA---------------DSGADHSIKLKHTERGMVQKVVL 894
+DG F + D++IG+ + + S+ ++ E+G+V V L
Sbjct: 278 EDGLIFPETEVGPDDVLIGRTSPPRFLEEPTELGISPQKRRETSVTMRSNEKGVVDAVFL 337
Query: 895 SSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINP 954
++ G + V +R +R P LGDKF+S HGQKGV+G L +E+ PFT GIVPD++INP
Sbjct: 338 MQSEGGSKLAKVRVRDLRIPELGDKFASRHGQKGVVGLLVPEEDMPFTESGIVPDLIINP 397
Query: 955 HAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWG 1014
HA PSR T G +LE GK G G + + F S + + L + GFS G
Sbjct: 398 HAIPSRMTVGHVLEMIGGK------VGSLEGRRVDGSLFHGESEEDLRATLKKYGFSHTG 451
Query: 1015 TERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGI 1074
E +YDG TG IF+G +YQ+L HM K+ R+ GPV LTRQP R R GG+
Sbjct: 452 KEVMYDGITGRRYLVDIFVGVIYYQKLYHMVSSKIHARSRGPVQVLTRQPTEGRARKGGL 511
Query: 1075 KFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYC 1134
+FGEMERD LI HGAA L +RL SD ++ +C C +VA R YC
Sbjct: 512 RFGEMERDVLIGHGAALLLKDRLLEESDKVEVWVCGNCGHVATYDYR-------RNTAYC 564
Query: 1135 RICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
ICD +I K + Y KLL EL SM I +
Sbjct: 565 HICDDESNIHKVEMSYAFKLLLDELKSMMIAPRI 598
>sp|P0C8K2|RPB2_ASFK5 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Pig/Kenya/KEN-50/1950) GN=Ken-065 PE=3 SV=1
Length = 1242
Score = 333 bits (854), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 324/1226 (26%), Positives = 536/1226 (43%), Gaps = 191/1226 (15%)
Query: 16 DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGY-DPS 74
+L E + +F A N GL+ + I S+++ + NG+ + V+ Y D
Sbjct: 20 ELTEADMLSFISAAV----NSTGLIGYNIKSFDDLMDNGIPQIVKQMFN--VDITYKDQR 73
Query: 75 KKGEGEWRYASMR----FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQ 130
E + S++ F V +++P + G++ ++ P ARL ++YS +K+ +
Sbjct: 74 DHTEIDKLRESVQIQFNFTDVNIERPQHRNYSQGNKINLLPNKARLSGLSYSGPVKLAAE 133
Query: 131 FQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK----- 185
+ + + GR+ EV + P+M S+ C + K
Sbjct: 134 V-------ILTAHYSNGRQ-----EVKRASIPPFQVSTFPIMRGSNRCHTHDLSKTAKKE 181
Query: 186 -GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDM 244
G+ + GGYFI +G E V E I L + Y + + N I+R +
Sbjct: 182 IGEDPNEPGGYFIARGGEWVVDLLENIRFNTLHIH--------YHTMQQGNNEIIRGEFI 233
Query: 245 SK----FED--------IKGGE---KVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDF 289
S+ FE+ + G ++ S F IP +++F G++ D I+ + F
Sbjct: 234 SQPGGAFENSSQIIIRYMTTGAITIEINSTKFSKLRIPWYLIFRMFGMTGDDSIIEQVVF 293
Query: 290 TCEDCSILN-----ILFASIHDADNKCDEFRKGRNALKYV----DKLIKGTTFPPGESTE 340
E S +N IL SIH +D + N K + +K+ K + P ++
Sbjct: 294 DLESNSPVNTFMIEILEKSIHVSDPIFQPVQHELNREKIIQFLSEKVSKFVSNPSAYKSD 353
Query: 341 E------------CMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDF 384
E ++ L P + T +K RFLG ++ +L +RD +
Sbjct: 354 ENAVQYLNERQLTILDKILLPHMGQTADTRVRKLRFLGLLIHKILLVIMNVFPPTDRDSY 413
Query: 385 RNKRLELAGELLERELKV-----HIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTN 439
R KR+ +G L + K IA + L++ + + T R I A++ N
Sbjct: 414 RTKRVHGSGVSLAKAFKAIFNTSVIAPIINGFKELLKQTAFEELTQRNIIEAFSAALSKN 473
Query: 440 G---LSRAFSTGAWSHPFKRTERISGIV-----ANLGRANPLQTLVDLR-----RTRQQV 486
L+R+ S R IV +L R N L T+ LR T
Sbjct: 474 TASDLNRSMEQSIISGNKTIMVRQRPIVNRVSTQSLERKNLLNTISALRTVNTHSTTNAS 533
Query: 487 QYTGKVGDARYPHPSHWGKICFLSTPD-GENCGLVKNLGVTGLVSTS--ILEPIFEQLFN 543
+ T + R H S+ G IC + D GE G+ K L +T V T+ +L L +
Sbjct: 534 KQTERADMMRRVHASYPGYICVAQSADTGEKVGMSKQLAITANVCTAGEVLSLKQRLLSD 593
Query: 544 SGMEKLADDASYSL--GGKFKVFVDGDWIGVCKDSLSFVSELRRKRRR-KELPTQVEIKR 600
+++LAD ++ + G +VF++G+WIG C ++ R RR K + I
Sbjct: 594 PAIQQLADVSNKDIVRKGLARVFINGEWIGCCTNAFELAQRYRMLRREGKIVHPHTTIYW 653
Query: 601 DELQSEVRIFMDAGRILRPLLVVEN------------------------MGKIKSLEGKN 636
D + EV ++D GR+ RPLL+V+N KI ++
Sbjct: 654 DSMVDEVEFWLDVGRLTRPLLIVDNNIEKYNEACYKAAEARKKGNKDWEKHKISFVQNTR 713
Query: 637 YTFQA-------------LLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHC 683
+T Q L+ GI E + EE E+C A+ I L K D +FTH
Sbjct: 714 FTSQMAKAILAGTLTLEDLVAQGICEFITPEEAENCLVAFSITELRKHKHDVTR-RFTHV 772
Query: 684 ELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQ 743
++ S +LGL+ + P+AN RV Y++ + Q G+ + RVD FY +
Sbjct: 773 DVPQS-ILGLAALVSPYANCTQPARVTYETNQ-GRQTGGWYCFSWPYRVDMNRFFQFYNE 830
Query: 744 RPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERG 803
PL +T+ HN+++P NG N IVA ++ GYNQEDS++++++ ++RG
Sbjct: 831 MPLVKTI----------AHNYVIP-----NGLNTIVAYMIYGGYNQEDSVIVSQSFIDRG 875
Query: 804 MFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGR-------VDSLDDDGFPFI 856
F R K E+++ D+ +FGK I + + L D GF +
Sbjct: 876 GFAGTFYREEKVELES-----------DIESFGKPDPLITKNLKPGANYEKLVD-GFVPV 923
Query: 857 GANLQSGDIVIGKYA---------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVS 907
G ++ GDI+IGK A + D S+ E +V V+ + + F ++
Sbjct: 924 GTVVKKGDIIIGKVAKIRGEKDELNKYIDRSVMYGFDEPAVVDAVMRPHGPNDEIFGLMR 983
Query: 908 LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLL 967
LR R+ +GDK SS G KG+ + PFT G+ PD+++NPH+ PSR T GQ++
Sbjct: 984 LRYERNLNIGDKMSSRSGNKGIAALALPTSDMPFTEDGLQPDLIVNPHSHPSRMTNGQMI 1043
Query: 968 EAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMV 1027
E + G+A +G+ + T F +V ++E+L + G G +++++G+TGE
Sbjct: 1044 ETTV--GLANALQGVVTD----GTAFLPINVQLLSERLAQEGLRFNGCQKMFNGQTGEYF 1097
Query: 1028 RSLIFIGPTFYQRLIH-MSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIA 1086
+ IFIGPT++QRL + +D+ + GP LT QP+ ++ GG++ GEME L A
Sbjct: 1098 DAAIFIGPTYHQRLQKFVLDDRYAVASYGPTDALTGQPLDGKRSHGGLRLGEMEHWVLTA 1157
Query: 1087 HGAAANLHERLFTLSDSYQMHICRKC 1112
GA + E+ SD +ICR C
Sbjct: 1158 QGAMQTIIEKSHDDSDGCISYICRNC 1183
>sp|P0C8K3|RPB2_ASFM2 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Tick/Malawi/Lil 20-1/1983) GN=Mal-061 PE=3 SV=1
Length = 1242
Score = 332 bits (850), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 323/1226 (26%), Positives = 535/1226 (43%), Gaps = 191/1226 (15%)
Query: 16 DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGY-DPS 74
+L E + +F A N GL+ + I S+++ + NG+ + V+ Y D
Sbjct: 20 ELTEADMLSFISAAV----NSTGLIGYNIKSFDDLMDNGIPQIVKQMFN--VDITYKDQR 73
Query: 75 KKGEGEWRYASMR----FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQ 130
E + S++ F V +++P + G++ ++ P ARL ++YS + + +
Sbjct: 74 DHTEIDKLRESVQIQFNFTDVNIERPQHRNYSQGNKINLLPNKARLCGLSYSGPVNLAAE 133
Query: 131 FQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK----- 185
+ + + GR+ EV + P+M S+ C + K
Sbjct: 134 V-------ILTAHYSNGRQ-----EVKRASIPPFQVSTFPIMRGSNRCHTYHLSKTAKKE 181
Query: 186 -GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDM 244
G+ + GGYFI +G E V E I L + Y + + N I+R +
Sbjct: 182 IGEDPNEPGGYFIARGGEWVVDLLENIRFNTLHIH--------YHTMQQGNNEIIRGEFI 233
Query: 245 SK----FED--------IKGGE---KVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDF 289
S+ FE+ + G ++ S F IP +++F G++ D I+ + F
Sbjct: 234 SQPGGAFENSSQIIIRYMTTGAITIEINSTKFSKLRIPWYLIFRMFGMTGDDSIIEQVVF 293
Query: 290 TCEDCSILN-----ILFASIHDADNKCDEFRKGRNALKYV----DKLIKGTTFPPGESTE 340
E S +N IL SIH +D + N K + +K+ K + P ++
Sbjct: 294 DLESNSPVNTFMIEILEKSIHVSDPIFQPVQHELNREKIIQFLSEKVSKFVSNPSAYKSD 353
Query: 341 E------------CMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDF 384
E ++ L P + T +K RFLG ++ +L +RD +
Sbjct: 354 ENAVQYLNERQLTILDKILLPHMGQTADTRVRKLRFLGLLIHKILLVIMNVFPPTDRDSY 413
Query: 385 RNKRLELAGELLERELKV-----HIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTN 439
R KR+ +G L + K IA + L++ + D T R I A++ N
Sbjct: 414 RTKRVHGSGVSLAKAFKAIFNTSVIAPIINGFKELLKQTAFEDLTQRNIIEAFSAALSKN 473
Query: 440 G---LSRAFSTGAWSHPFKRTERISGIV-----ANLGRANPLQTLVDLR-----RTRQQV 486
L+R+ S R IV +L R N L T+ LR T
Sbjct: 474 SASDLNRSMEQSIISGNKTIMVRQRPIVNRVSTQSLERKNLLNTISALRTVNTHSTTNAS 533
Query: 487 QYTGKVGDARYPHPSHWGKICFLSTPD-GENCGLVKNLGVTGLVSTS--ILEPIFEQLFN 543
+ T + R H S+ G IC + D GE G+ K L +T V T+ +L L +
Sbjct: 534 KQTERADMMRRVHASYPGYICVAQSADTGEKVGMSKQLAITANVCTAGEVLSLKQRLLSD 593
Query: 544 SGMEKLADDASYSL--GGKFKVFVDGDWIGVCKDSLSFVSELRRKRRR-KELPTQVEIKR 600
+++LAD ++ + G +VF++G+WIG C ++ R RR K + I
Sbjct: 594 PAIQQLADVSNKDIVRKGLARVFINGEWIGCCTNAFELAQRYRMLRREGKIVHPHTTIYW 653
Query: 601 DELQSEVRIFMDAGRILRPLLVVEN------------------------MGKIKSLEGKN 636
D + EV ++D GR+ RPLL+V+N KI ++
Sbjct: 654 DSMVDEVEFWLDVGRLTRPLLIVDNNIEKYNKACYKAAEARKKGDKDWEKHKIPFIQNTR 713
Query: 637 YTFQA-------------LLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHC 683
+T Q L+ GI E + EE E+C A+ I L K D +FTH
Sbjct: 714 FTSQMAKDILAGTLTLEDLVAQGICEFITPEEAENCLVAFSITELRKHKHDVTR-RFTHV 772
Query: 684 ELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQ 743
++ + +LGL+ + P+AN RV Y++ + Q G+ + RVD FY +
Sbjct: 773 DVPQA-ILGLAALVSPYANCTQPARVTYETNQ-GRQTGGWYCFSWPYRVDMNRFFQFYNE 830
Query: 744 RPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERG 803
PL +T+ HN+++P NG N IVA ++ GYNQEDS++++++ ++RG
Sbjct: 831 MPLVKTI----------AHNYVIP-----NGLNTIVAYMIYGGYNQEDSVIVSQSFIDRG 875
Query: 804 MFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGR-------VDSLDDDGFPFI 856
F R K E+++ D+ +FGK I + + L D GF +
Sbjct: 876 GFAGTFYREEKVELES-----------DIESFGKPDPLITKNLKPGANYEKLVD-GFVPV 923
Query: 857 GANLQSGDIVIGKYA---------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVS 907
G ++ GDI+IGK A + D S+ E +V V+ + + F ++
Sbjct: 924 GTVVKKGDIIIGKVAKIRGEKDELNKYIDRSVMYGFDEPAVVDAVMRPHGPNDEIFGLMR 983
Query: 908 LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLL 967
LR R+ +GDK SS G KG+ + PFT G+ PD+++NPH+ PSR T GQ++
Sbjct: 984 LRYERNLNIGDKMSSRSGNKGIAALALPTSDMPFTEDGLQPDLIVNPHSHPSRMTNGQMI 1043
Query: 968 EAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMV 1027
E + G+A +G+ + T F +V ++E+L + G G +++++G+TGE
Sbjct: 1044 ETTV--GLANALQGVVTD----GTAFLPINVQLLSERLAQEGLRFNGCQKMFNGQTGEYF 1097
Query: 1028 RSLIFIGPTFYQRLIH-MSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIA 1086
+ IFIGPT++QRL + +D+ + GP LT QP+ ++ GG++ GEME L A
Sbjct: 1098 DAAIFIGPTYHQRLQKFVLDDRYAVASYGPTDALTGQPLDGKRSHGGLRLGEMEHWVLTA 1157
Query: 1087 HGAAANLHERLFTLSDSYQMHICRKC 1112
GA + E+ SD +ICR C
Sbjct: 1158 QGAMQTIIEKSHDDSDGCISYICRNC 1183
>sp|P20028|RPA2_DROME DNA-directed RNA polymerase I subunit RPA2 OS=Drosophila melanogaster
GN=RpI135 PE=2 SV=2
Length = 1129
Score = 329 bits (843), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 289/1066 (27%), Positives = 476/1066 (44%), Gaps = 131/1066 (12%)
Query: 163 NIIIGRIPVMVKSDLCWM------KGVEKGDCDFDHGGYFIIKGAEKVFVA------QEQ 210
N+ +G +P+M++S C + + V+ G+ D + GG F+I+G EK+
Sbjct: 130 NMDLGEVPIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNHP 189
Query: 211 ICLKRL-WVS-----NSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLST 264
IC+KR W + +G V E++ + L ++ + + + + S +
Sbjct: 190 ICVKRSSWKDRGQNFSDLGMLVQTVREDESS-----LSNVVHYLNNGTAKFMFSHVKRLS 244
Query: 265 EIPIWILFFALGVSSDKEIVN-LIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKY 323
+P+ ++ L +D+EI N L+ D ++ + A + + N + +
Sbjct: 245 YVPVCLILKCLMDYTDEEIYNRLVQGYESDQYYVSCVQAMLREVQN--ENVYTHAQCKSF 302
Query: 324 VDKLIKG------TTFPPGESTEECMNTYLFPSLHGTKQKARFLGYMVKCLLQAYSGRRK 377
+ L + P + T+ + + L + K + + +M++ L Q G+ K
Sbjct: 303 IGNLFRARFPEVPEWQPDDDVTDFILRERVMIHLDTYEDKFQLIVFMIQKLFQCAQGKYK 362
Query: 378 CDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASIL 437
+N D + + L G L ++ L + ++ + LQ+ L + + ++++
Sbjct: 363 VENVDSAMMQEVLLPGHLYQKYLSERVESWVSQVRRCLQKKLTSPDAL------VTSAVM 416
Query: 438 TNGLSRAFSTGAWSHPFKRTERI-----------SGIVANLGRANPLQTLVDLRRTRQQV 486
T + +A G F T I SG+V N ++ + R +
Sbjct: 417 TQCMRQAGGVGRAIESFLATGNIASRTGLGLMQNSGLVIMAENINRMRYMSHFRAIHRGS 476
Query: 487 QYTG-KVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST----SILEPIFEQL 541
+T + +AR P WG IC + TPDG CGL+ +L +T +S +++ I + L
Sbjct: 477 YFTTMRTTEARQLLPDAWGFICPVHTPDGTPCGLLNHLTLTCEISMRPDPKLVKAIPKHL 536
Query: 542 FNSGMEKLADDASYSLGGK-FKVFVDGDWIGVCKDSLS--FVSELRRKRRRKELPTQVEI 598
+ GM L++ LG K + VF+DG +G S + V ELR + LP +EI
Sbjct: 537 IDMGMMPLSNRRY--LGEKLYVVFLDGKHLGHIHQSEAEKIVDELRYGKIFGTLPQMMEI 594
Query: 599 -----KRDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGT 653
K++ + I R++RP + +L+ K +E +GT
Sbjct: 595 GFIPFKKNGQFPGLYIATGPARMMRP---------VWNLKWKR-----------VEYIGT 634
Query: 654 EEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQS 713
E+ A K + D TH EL + + +IP +++ + R +YQ
Sbjct: 635 LEQLYMEIAIDAKEMYPDFT-------THLELAKTHFMSNLANLIPMPDYNQSPRNMYQC 687
Query: 714 QKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYN 773
Q Q +G P N + ++L P PLFR + D + +
Sbjct: 688 QM-GKQTMGTPCLNWPKQAANKLYRLQTPGTPLFRPVHYDNIQLDDFAM----------- 735
Query: 774 GQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMV 833
G NAIVAV + GY+ ED++++N+A+ ERG +Y + K + + ++SS
Sbjct: 736 GTNAIVAVISYTGYDMEDAMIINKAAYERGF-------AYGSIYKTKFLTLDKKSS---- 784
Query: 834 NFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGADHSI-KLKHTERGMVQKV 892
F + + LD DG P G+ L G + + A + + K+ E +V+ +
Sbjct: 785 YFARHPHMPELIKHLDTDGLPHPGSKLSYGSPLYCYFDGEVATYKVVKMDEKEDCIVESI 844
Query: 893 -VLSSND-DGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDI 950
L S D K ++LR R +GDKF+S GQKG+ E+ PFT G++PDI
Sbjct: 845 RQLGSFDLSPKKMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDI 904
Query: 951 VINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF----ATPSVDAITEQLH 1006
V NPH FPSR T ++E GKG A G ATPF ++D + L
Sbjct: 905 VFNPHGFPSRMTIAMMIETMAGKGAAIHGNVYD------ATPFRFSEENTAIDYFGKMLE 958
Query: 1007 RAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVA 1066
G++ +GTERLY G G + + IF G YQRL HM DK + R+TG V T QP+
Sbjct: 959 AGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVRSTGAVEARTHQPIK 1018
Query: 1067 DRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVV--- 1123
RKR GG++FGEMERD LI+HGAA L +RLF SD +C KC ++ +QR+V
Sbjct: 1019 GRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSDKTHTLVCHKCGSILAPLQRIVKRN 1078
Query: 1124 -GGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
GG + CR+C + +P+ K L EL S+ I +F
Sbjct: 1079 ETGGLSSQPDTCRLCGDNSSVSMIEIPFSFKYLVTELSSVNINARF 1124
>sp|P0C8K5|RPB2_ASFWA DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Warthog/Namibia/Wart80/1980) GN=War-063 PE=3
SV=1
Length = 1242
Score = 328 bits (842), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 321/1226 (26%), Positives = 535/1226 (43%), Gaps = 191/1226 (15%)
Query: 16 DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGY-DPS 74
+L E + +F A N GL+ + I S+++ + NG+ + V+ Y D
Sbjct: 20 ELTEADMLSFISAAV----NSTGLIGYNIKSFDDLMDNGIPQIVKQMFN--VDITYKDQR 73
Query: 75 KKGEGEWRYASMR----FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQ 130
E + S++ F V +++P + G++ ++ P ARL ++YS + + +
Sbjct: 74 DHTEIDKLRESVQIQFNFTDVNIERPQHRNYSQGNKINLLPNKARLCGLSYSGPVNLAAE 133
Query: 131 FQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK----- 185
+ + + GR+ EV + P+M S+ C + K
Sbjct: 134 V-------ILTAHYSNGRQ-----EVKRASIPPFQVSTFPIMRGSNRCHTHHLSKTAKKE 181
Query: 186 -GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDM 244
G+ + GGYFI +G E V E I L + Y + + N I+R +
Sbjct: 182 IGEDPNEPGGYFIARGGEWVVDLLENIRFNTLHIH--------YHTMQQGNNEIIRGEFI 233
Query: 245 SK----FED--------IKGGE---KVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDF 289
S+ FE+ + G ++ S F IP +++F G++ D I+ + F
Sbjct: 234 SQPGGAFENSSQIIIRYMTTGAITIEINSTKFSKLRIPWYLIFRMFGMTGDDSIIEQVVF 293
Query: 290 TCEDCSILN-----ILFASIHDADNKCDEFRKGRNALKYV----DKLIKGTTFPPGESTE 340
E S++N IL SIH D + N K + +K+ K + P ++
Sbjct: 294 DLESNSLVNTFMIEILEKSIHVLDPIFQPVQHELNREKIIQFLSEKVSKFVSNPSAYKSD 353
Query: 341 E------------CMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDF 384
E ++ L P + T +K RFLG ++ +L +RD +
Sbjct: 354 ENAVQYLNERQLTILDKILLPHMGQTADTRVRKLRFLGLLIHKILLVIMNVFPPTDRDSY 413
Query: 385 RNKRLELAGELLERELKV-----HIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTN 439
R KR+ +G L + K IA + L++ + + T R I A++ N
Sbjct: 414 RTKRVHGSGVSLAKAFKAIFNTSVIAPIINGFKELLKQTAFEELTQRNIIEAFSAALSKN 473
Query: 440 G---LSRAFSTGAWSHPFKRTERISGIV-----ANLGRANPLQTLVDLR-----RTRQQV 486
L+R+ S R IV +L R N L T+ LR T
Sbjct: 474 TASDLNRSMEQSIISGNKTIMVRQRPIVNRVSTQSLERKNLLNTISALRTVNTHNTTNAS 533
Query: 487 QYTGKVGDARYPHPSHWGKICFLSTPD-GENCGLVKNLGVTGLVSTS--ILEPIFEQLFN 543
+ T + R H S+ G IC + D GE G+ K L +T V T+ +L L +
Sbjct: 534 KQTERADMMRRVHASYPGYICVAQSADTGEKVGMSKQLAITANVCTAGEVLSLKQRLLSD 593
Query: 544 SGMEKLADDASYSL--GGKFKVFVDGDWIGVCKDSLSFVSELRRKRRR-KELPTQVEIKR 600
+++LAD ++ + G +VF++G+WIG C ++ R RR K + I
Sbjct: 594 PAIQQLADVSNKDIVRKGLARVFINGEWIGCCTNAFELAQRYRMLRREGKIVHPHTTIYW 653
Query: 601 DELQSEVRIFMDAGRILRPLLVVEN------------------------MGKIKSLEGKN 636
D + EV ++D GR+ RPLL+V+N KI ++
Sbjct: 654 DSMVDEVEFWLDVGRLTRPLLIVDNNIEKYNQACYKAAEARKKGDKDWEKHKIPFVQNTR 713
Query: 637 YTFQA-------------LLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHC 683
+T Q L+ GI E + EE E+C A+ I L K D +FTH
Sbjct: 714 FTSQMAKDILAGTLTLEDLVAQGICEFITPEEAENCLVAFSIIELRKHKHDVTR-RFTHV 772
Query: 684 ELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQ 743
++ + +LGL+ + P+AN RV Y++ + Q G+ + RVD FY +
Sbjct: 773 DVPQA-ILGLAALVSPYANCTQPARVTYETNQ-GRQTGGWYCFSWPYRVDMNRFFQFYNE 830
Query: 744 RPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERG 803
PL +T+ HN+++P NG N IVA ++ GYNQEDS++++++ ++RG
Sbjct: 831 MPLVKTI----------AHNYVIP-----NGLNTIVAYMIYGGYNQEDSVIVSQSFIDRG 875
Query: 804 MFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGR-------VDSLDDDGFPFI 856
F R K E+++ D+ +FGK I + + L D GF +
Sbjct: 876 GFAGTFYREEKVELES-----------DIESFGKPDPLITKNLKPGANYEKLVD-GFVPV 923
Query: 857 GANLQSGDIVIGKYA---------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVS 907
G ++ GDI+IGK A + D S+ E +V V+ + + F ++
Sbjct: 924 GTVVKKGDIIIGKVAKIRGEKDELNKYIDRSVMYGFDEPAVVDAVMRPHGPNDEIFGLMR 983
Query: 908 LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLL 967
LR R+ +GDK SS G KG+ + PFT G+ PD+++NPH+ PSR T GQ++
Sbjct: 984 LRYERNLNIGDKMSSRSGNKGIAALALPTSDMPFTEDGLQPDLIVNPHSHPSRMTNGQMI 1043
Query: 968 EAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMV 1027
E + G+A +G+ + T F +V ++E+L + G G +++++G+TGE
Sbjct: 1044 ETTV--GLANALQGVVTD----GTAFLPINVQLLSERLAQEGLRFNGCQKMFNGQTGEYF 1097
Query: 1028 RSLIFIGPTFYQRLIH-MSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIA 1086
+ IFIGPT++QRL + +D+ + GP LT QP+ ++ GG++ GEME L A
Sbjct: 1098 DAAIFIGPTYHQRLQKFVLDDRYAVASYGPTDALTGQPLDGKRSHGGLRLGEMEHWVLTA 1157
Query: 1087 HGAAANLHERLFTLSDSYQMHICRKC 1112
GA + E+ SD ++CR C
Sbjct: 1158 QGAMQTIIEKSHDDSDGCISYVCRNC 1183
>sp|P0C8K4|RPB2_ASFP4 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Tick/South Africa/Pretoriuskop Pr4/1996)
GN=Pret-065 PE=3 SV=1
Length = 1242
Score = 328 bits (842), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 321/1226 (26%), Positives = 535/1226 (43%), Gaps = 191/1226 (15%)
Query: 16 DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGY-DPS 74
+L E + +F A N GL+ + I S+++ + NG+ + V+ Y D
Sbjct: 20 ELTEADMLSFISAAV----NSTGLIGYNIKSFDDLMDNGIPQIVKQMFN--VDITYKDQR 73
Query: 75 KKGEGEWRYASMR----FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQ 130
E + S++ F V +++P + G++ ++ P ARL ++YS + + +
Sbjct: 74 DHTEIDKLRESVQIQFNFTDVNIERPQHRNYSQGNKINLLPNKARLCGLSYSGPVNLAAE 133
Query: 131 FQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK----- 185
+ + + GR+ EV + P+M S+ C + K
Sbjct: 134 V-------ILTAHYSNGRQ-----EVKRASIPPFQVSTFPIMRGSNRCHTHHLSKTAKKE 181
Query: 186 -GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDM 244
G+ + GGYFI +G E V E I L + Y + + N I+R +
Sbjct: 182 IGEDPNEPGGYFIARGGEWVVDLLENIRFNTLHIH--------YHTMQQGNNEIIRGEFI 233
Query: 245 SK----FED--------IKGGE---KVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDF 289
S+ FE+ + G ++ S F IP +++F G++ D I+ + F
Sbjct: 234 SQPGGAFENSSQIIIRYMTTGAITIEINSTKFSKLRIPWYLIFRMFGMTGDDSIIEQVVF 293
Query: 290 TCEDCSILN-----ILFASIHDADNKCDEFRKGRNALKYV----DKLIKGTTFPPGESTE 340
E S++N IL SIH D + N K + +K+ K + P ++
Sbjct: 294 DLESNSLVNTFMIEILEKSIHVLDPIFQPVQHELNREKIIQFLSEKVSKFVSNPSAYKSD 353
Query: 341 E------------CMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDF 384
E ++ L P + T +K RFLG ++ +L +RD +
Sbjct: 354 ENAVQYLNERQLTILDKILLPHMGQTADTRVRKLRFLGLLIHKILLVIMNVFPPTDRDSY 413
Query: 385 RNKRLELAGELLERELKV-----HIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTN 439
R KR+ +G L + K IA + L++ + + T R I A++ N
Sbjct: 414 RTKRVHGSGVSLAKAFKAIFNTSVIAPIINGFKELLKQTAFEELTQRNIIEAFSAALSKN 473
Query: 440 G---LSRAFSTGAWSHPFKRTERISGIV-----ANLGRANPLQTLVDLR-----RTRQQV 486
L+R+ S R IV +L R N L T+ LR T
Sbjct: 474 TASDLNRSMEQSIISGNKTIMVRQRPIVNRVSTQSLERKNLLNTISALRTVNTHNTTNAS 533
Query: 487 QYTGKVGDARYPHPSHWGKICFLSTPD-GENCGLVKNLGVTGLVSTS--ILEPIFEQLFN 543
+ T + R H S+ G IC + D GE G+ K L +T V T+ +L L +
Sbjct: 534 KQTERADMMRRVHASYPGYICVAQSADTGEKVGMSKQLAITANVCTAGEVLSLKQRLLSD 593
Query: 544 SGMEKLADDASYSL--GGKFKVFVDGDWIGVCKDSLSFVSELRRKRRR-KELPTQVEIKR 600
+++LAD ++ + G +VF++G+WIG C ++ R RR K + I
Sbjct: 594 PAIQQLADVSNKDIVRKGLARVFINGEWIGCCTNAFELAQRYRMLRREGKIVHPHTTIYW 653
Query: 601 DELQSEVRIFMDAGRILRPLLVVEN------------------------MGKIKSLEGKN 636
D + EV ++D GR+ RPLL+V+N KI ++
Sbjct: 654 DSMVDEVEFWLDVGRLTRPLLIVDNNIEKYNQACYKAAEARKKGDKDWEKHKIPFVQNTR 713
Query: 637 YTFQA-------------LLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHC 683
+T Q L+ GI E + EE E+C A+ I L K D +FTH
Sbjct: 714 FTSQMAKDILAGTLTLEDLVAQGICEFITPEEAENCLVAFSIIELRKHKHDVTR-RFTHV 772
Query: 684 ELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQ 743
++ + +LGL+ + P+AN RV Y++ + Q G+ + RVD FY +
Sbjct: 773 DVPQA-ILGLAALVSPYANCTQPARVTYETNQ-GRQTGGWYCFSWPYRVDMNRFFQFYNE 830
Query: 744 RPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERG 803
PL +T+ HN+++P NG N IVA ++ GYNQEDS++++++ ++RG
Sbjct: 831 MPLVKTI----------AHNYVIP-----NGLNTIVAYMIYGGYNQEDSVIVSQSFIDRG 875
Query: 804 MFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGR-------VDSLDDDGFPFI 856
F R K E+++ D+ +FGK I + + L D GF +
Sbjct: 876 GFAGTFYREEKVELES-----------DIESFGKPDPLITKNLKPGANYEKLVD-GFVPV 923
Query: 857 GANLQSGDIVIGKYA---------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVS 907
G ++ GDI+IGK A + D S+ E +V V+ + + F ++
Sbjct: 924 GTVVKKGDIIIGKVAKIRGEKDELNKYIDRSVMYGFDEPAVVDAVMRPHGPNDEIFGLMR 983
Query: 908 LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLL 967
LR R+ +GDK SS G KG+ + PFT G+ PD+++NPH+ PSR T GQ++
Sbjct: 984 LRYERNLNIGDKMSSRSGNKGIAALALPTSDMPFTEDGLQPDLIVNPHSHPSRMTNGQMI 1043
Query: 968 EAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMV 1027
E + G+A +G+ + T F +V ++E+L + G G +++++G+TGE
Sbjct: 1044 ETTV--GLANALQGVVTD----GTAFLPINVQLLSERLAQEGLRFNGCQKMFNGQTGEYF 1097
Query: 1028 RSLIFIGPTFYQRLIH-MSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIA 1086
+ IFIGPT++QRL + +D+ + GP LT QP+ ++ GG++ GEME L A
Sbjct: 1098 DAAIFIGPTYHQRLQKFVLDDRYAVASYGPTDALTGQPLDGKRSHGGLRLGEMEHWVLTA 1157
Query: 1087 HGAAANLHERLFTLSDSYQMHICRKC 1112
GA + E+ SD ++CR C
Sbjct: 1158 QGAMQTIIEKSHDDSDGCISYVCRNC 1183
>sp|P42487|RPB2_ASFB7 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(strain Badajoz 1971 Vero-adapted) GN=Ba71V-053 PE=3 SV=1
Length = 1242
Score = 328 bits (840), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 322/1226 (26%), Positives = 534/1226 (43%), Gaps = 191/1226 (15%)
Query: 16 DLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGY-DPS 74
+L E + +F A N GL+ + I S+++ + NG+ + V+ Y D
Sbjct: 20 ELTEADMLSFISAAV----NSTGLIGYNIKSFDDLMDNGIPQIVKQMFN--VDITYKDQR 73
Query: 75 KKGEGEWRYASMR----FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQ 130
E + S++ F V +++P + G++ ++ P ARL ++YS + + +
Sbjct: 74 DHTEIDKLRESVQIQFNFTDVNIERPQHRNYSQGNKINLLPNKARLCGLSYSGPVNLAAE 133
Query: 131 FQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEK----- 185
+ + + GR+ EV + P+M S+ C + K
Sbjct: 134 V-------ILTAHYSNGRQ-----EVKRASIPPFQVSTFPIMRGSNRCHTHHLSKTAKKE 181
Query: 186 -GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDM 244
G+ + GGYFI +G E V E I L + Y + + N I+R +
Sbjct: 182 IGEDPNEPGGYFIARGGEWVVDLLENIRFNTLHIH--------YHTMQQGNNEIIRGEFI 233
Query: 245 SK----FED--------IKGGE---KVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDF 289
S+ FE+ + G ++ S F IP +++F G++ D I+ + F
Sbjct: 234 SQPGGAFENSSQIIIRYMTTGAITIEINSTKFSKLRIPWYLIFRMFGMTGDDSIIEQVVF 293
Query: 290 TCEDCSILN-----ILFASIHDADNKCDEFRKGRNALKYV----DKLIKGTTFPPGESTE 340
E S +N IL SIH D + N K + +K+ K + P ++
Sbjct: 294 DLESNSPVNTFMIEILEKSIHVLDPIFQPVQHEPNREKIIQFLSEKVSKFVSNPSAYKSD 353
Query: 341 E------------CMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDF 384
E ++ L P + T +K RFLG ++ +L +RD +
Sbjct: 354 ENAVQYLNERQLTILDKILLPHMGQTADTRVRKLRFLGLLIHKILLVIMNVFPPTDRDSY 413
Query: 385 RNKRLELAGELLERELKV-----HIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTN 439
R KR+ +G L + K IA + L++ + + T R I A++ N
Sbjct: 414 RTKRVHGSGVSLAKAFKAIFNTSVIAPIINGFKELLKQTAFEELTQRNIIEAFSAALSKN 473
Query: 440 G---LSRAFSTGAWSHPFKRTERISGIV-----ANLGRANPLQTLVDLR-----RTRQQV 486
L+R+ S R IV +L R N L T+ LR T
Sbjct: 474 TASDLNRSMEQSIISGNKTIMVRQRPIVNRVSTQSLERKNLLNTISALRTVNTHNTTNAS 533
Query: 487 QYTGKVGDARYPHPSHWGKICFLSTPD-GENCGLVKNLGVTGLVSTS--ILEPIFEQLFN 543
+ T + R H S+ G IC + D GE G+ K L +T V T+ +L L +
Sbjct: 534 KQTERADMMRRVHASYPGYICVAQSADTGEKVGMSKQLAITANVCTAGEVLSLKQRLLSD 593
Query: 544 SGMEKLADDASYSL--GGKFKVFVDGDWIGVCKDSLSFVSELRRKRRR-KELPTQVEIKR 600
+++LAD ++ + G +VF++G+WIG C ++ R RR K + I
Sbjct: 594 PAIQQLADVSNKDIVRKGLARVFINGEWIGCCTNAFELAQRYRMFRREGKIVHPHTTIYW 653
Query: 601 DELQSEVRIFMDAGRILRPLLVVEN------------------------MGKIKSLEGKN 636
D + EV ++D GR+ RPLL+V+N KI ++
Sbjct: 654 DSMVDEVEFWLDVGRLTRPLLIVDNNIEKYNQACYKAAEARKKGDKDWEKHKIPFIQNTR 713
Query: 637 YTFQA-------------LLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHC 683
+T Q L+ GI E + EE E+C A+ I L K D +FTH
Sbjct: 714 FTSQMAKDILAGTLTLEDLVAQGICEFITPEEAENCLVAFSIIELRKHKHDVTR-RFTHV 772
Query: 684 ELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQ 743
++ + +LGL+ + P+AN RV Y++ + Q G+ + RVD FY +
Sbjct: 773 DVPQA-ILGLAALVSPYANCTQPARVTYETNQ-GRQTGGWYCFSWPYRVDMNRFFQFYNE 830
Query: 744 RPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERG 803
PL +T+ HN+++P NG N IVA ++ GYNQEDS++++++ ++RG
Sbjct: 831 MPLVKTI----------AHNYVIP-----NGLNTIVAYMIYGGYNQEDSVIVSQSFIDRG 875
Query: 804 MFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGR-------VDSLDDDGFPFI 856
F R K E+++ D+ +FGK I + + L D GF +
Sbjct: 876 GFAGTFYREEKVELES-----------DIESFGKPDPLITKNLKPGANYEKLVD-GFVPV 923
Query: 857 GANLQSGDIVIGKYA---------DSGADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVS 907
G ++ GDI+IGK A + D S+ E +V V+ + + F ++
Sbjct: 924 GTVVKKGDIIIGKVAKIRGEKDELNKYIDRSVMYGFDEPAVVDAVMRPHGPNDEIFGLMR 983
Query: 908 LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLL 967
LR R+ +GDK SS G KG+ + PFT G+ PD+++NPH+ PSR T GQ++
Sbjct: 984 LRYERNLNIGDKMSSRSGNKGIAALALPTSDMPFTEDGLQPDLIVNPHSHPSRMTNGQMI 1043
Query: 968 EAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMV 1027
E + G+A +G+ + T F +V ++E+L + G G +++++G+TGE
Sbjct: 1044 ETTV--GLANALQGVVTD----GTAFLPINVQLLSERLAQEGLRFNGCQKMFNGQTGEYF 1097
Query: 1028 RSLIFIGPTFYQRLIH-MSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIA 1086
+ IFIGPT++QRL + +D+ + GP LT QP+ ++ GG++ GEME L A
Sbjct: 1098 DAAIFIGPTYHQRLQKFVLDDRYAVASYGPTDALTGQPLDGKRSHGGLRLGEMEHWVLTA 1157
Query: 1087 HGAAANLHERLFTLSDSYQMHICRKC 1112
GA + E+ SD +ICR C
Sbjct: 1158 QGAMQTIIEKSHDDSDGCISYICRNC 1183
>sp|Q9P7X8|RPA2_SCHPO Probable DNA-directed RNA polymerase I subunit RPA2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpa2 PE=3 SV=2
Length = 1174
Score = 323 bits (828), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 329/1189 (27%), Positives = 521/1189 (43%), Gaps = 166/1189 (13%)
Query: 28 KAAVSFFNEYGLVSHQINSYNEFIKNGL-QKAFDSFGETIVEPGYDPSKKGEG-EWRYA- 84
K SF + V ++S+N GL A GE +D + EG ++
Sbjct: 17 KDGTSFPDLQKAVKPHVDSFNALTNAGLLNYAVKEIGEKC---AFDSITQEEGGALKFGN 73
Query: 85 --SMRFGQVTLDKPSFFAGNGGD-EHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTS 141
S R +V + KP + ++P AR + TY SR+ +K + V
Sbjct: 74 KISFRVDEVQIAKPMLSSRERSSINRKVYPAEARERLTTYKSRLVLKFSWSV-------- 125
Query: 142 DKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDC------DFDHGGY 195
G Q +EV G IP+MV+S+ C ++G+ + + GGY
Sbjct: 126 ---NGGPRQSEMREV----------GMIPIMVRSNRCHLEGLSPAELIAHKEESEEMGGY 172
Query: 196 FIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSEN-KRNRLIVRLV--DMSKFED--- 249
FI+ G EK+ + I KR + + + A + + + L +R V D S +
Sbjct: 173 FIVNGIEKLI--RMLILPKRNHPTAIIRPSFANRGTSYSQYGLSIRCVRPDQSSLTNTLH 230
Query: 250 -IKGGEKVLSVYFLSTE--IPIWILFFALGVSSDKEIVNLI-------DFTCEDCSILNI 299
+ G + ++ E IP ++ AL +SDKEI I F + ++
Sbjct: 231 YLNNGVTMFRFHWRKNEYLIPSMMILKALLETSDKEIFEGIVGKDLGNTFLTDRVELMLR 290
Query: 300 LFASIHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPSLHGTKQKAR 359
+ S + ++ + + + + V + + T E + + L K K R
Sbjct: 291 AYKS-YGLYSQTETLQYLGSKFRVVLGVAEDLT--DVEVGRFLLQKVVLVHLREAKDKFR 347
Query: 360 FLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDL 419
L +M++ L +G DN D +++ + L G L + LK I + + D+
Sbjct: 348 LLLFMIRKLYALVAGECCADNPDSPQHQEILLGGFLYGQILKEKIEDWLNSIRAQINLDV 407
Query: 420 YGDRTVRPIEYYLDASILTNGLSRA-----------FSTGAW-SHPFKRTERISGIVANL 467
R P + D LT S+ STG S+ ++ +G
Sbjct: 408 ---RRSAPGVDFSDRKYLTRVFSKINNDIGTKLQYFLSTGNLVSNTGLDLQQATGYTVVA 464
Query: 468 GRANPLQTLVDLRRTRQQVQYTG-KVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVT 526
+ N + L R + + K R P WG +C + TPDG CGL+ +L
Sbjct: 465 EKLNFYRFLSHFRMVHRGAFFAELKTTTVRKLLPEAWGFMCPVHTPDGSPCGLLNHLARK 524
Query: 527 GLVST--SILEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLS------ 578
+ T S + I L + G++ + S G V +DG +G C L+
Sbjct: 525 CEIVTHPSDVSQIPSLLLSLGVDPPSVVGHES--GWGCVQLDGKIVGWCTYKLAKHVADV 582
Query: 579 -------FVSELRR--KRRRKELPTQVEI-----KRDELQSEVRIFMDAGRILRPLLVVE 624
+ +LR ++P +EI + + +F + R++RP+ +
Sbjct: 583 LRLMKIEYAVKLRNGTATEPAKVPLDLEIGYVPPSHNGQYPGLYLFSNPARMVRPVKHIS 642
Query: 625 NMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCE 684
G ++++G E+ A K ++ + TH E
Sbjct: 643 T--------------------GELDMLGPFEQVYMDIACFPKEIVPKVS-------THVE 675
Query: 685 LDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQR 744
+ +L + + PF++ + + R +YQ Q Q +G P T R D ++L Q
Sbjct: 676 YSPTNVLSIVANMTPFSDFNQSPRNMYQCQM-GKQTMGTPGTALRYRTDNKLYRLQTGQT 734
Query: 745 PLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGM 804
P+ R + + YG +H NG NA+VAV + GY+ ED++++N+++ ERG
Sbjct: 735 PVVRPKLHNT-----YGLDHYP------NGTNAVVAVISYTGYDMEDAMILNKSAHERGF 783
Query: 805 FRSEHIRSYKAEVDNKEMQVKRRSSDDMVN-FGKIQSKIGR---VDSLDDDGFPFIGANL 860
+ YK E + ++ KRR + +V+ FG R + LD DG PFIG L
Sbjct: 784 ---GYGTVYKGE--SFDLSQKRRRGEPVVHHFGFAPGSTPRREWLQKLDADGLPFIGIKL 838
Query: 861 QSGDIVIGKYADSGADHSIKLKH-TERGMVQKVVLSSNDDGKNFSV---VSLRQVRSPCL 916
+ GD ++ Y +S + I+ H TE G V +V L ND G + V LR RSP +
Sbjct: 839 EDGDPIVAYYDESTGQNFIETYHGTEPGFVDEVRLLGNDVGDSECQQIHVKLRITRSPII 898
Query: 917 GDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIA 976
GDKFSS HGQKG+ + PFT G+ PDI+INPHAFPSR T G +E+ GK
Sbjct: 899 GDKFSSRHGQKGICSQKWPTVDMPFTESGMQPDIIINPHAFPSRMTIGMFIESLAGKA-- 956
Query: 977 ALGKGICSGLKRYATPF----ATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIF 1032
G C GL + +TPF + D EQL +AG++ G E +Y G TG+ +++ I+
Sbjct: 957 ----GACHGLAQDSTPFIYSEQQTAADYFGEQLVKAGYNYHGNEPMYSGITGQEMKADIY 1012
Query: 1033 IGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAAN 1092
IG +YQRL HM DK + R TGP+H LTRQPV RKR GGI+FGEMERD +I HG +
Sbjct: 1013 IGVVYYQRLRHMVSDKFQVRTTGPIHNLTRQPVKGRKRAGGIRFGEMERDAVIGHGTSFL 1072
Query: 1093 LHERLFTLSDSYQMHICRKCKNVANVIQRV----VGGGRKVRGPYCRIC 1137
+ +RL SD Q +CR C ++ +++ + VG +VR CR C
Sbjct: 1073 MQDRLMNCSDYAQSWVCRDCGSIISIMSTISMNGVGSASEVR---CRSC 1118
>sp|P28365|RPA2_EUPOC DNA-directed RNA polymerase I subunit RPA2 OS=Euplotes octocarinatus
GN=RPA2 PE=3 SV=2
Length = 1166
Score = 318 bits (814), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 345/1252 (27%), Positives = 537/1252 (42%), Gaps = 231/1252 (18%)
Query: 39 LVSHQINSYNEFIKNGLQKAFD---SFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDK 95
+ H I+S++ + L +A + F + E K W Y S GQ +L +
Sbjct: 19 IARHHIDSFDFAMSTCLNRACEHMLPFDYIVPEESASCGFKKLTLW-YDSFELGQPSLGE 77
Query: 96 PSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKE 155
+ D H ++P R + MTY+ + + F+ + + V D FK
Sbjct: 78 IDY------DSHILYPSECRQRKMTYTIPLFATI-FKKFDDEMV--DNFK---------- 118
Query: 156 VLSDETTNIIIGRIPVMVKSDLCWMKGVEK------GDCDFDHGGYFIIKGAEKVFVAQE 209
+ +G IP M + C +KG+ K G+ + GGYFI+ G EKV
Sbjct: 119 --------VKLGDIPTMGRKKFCNLKGLTKKELAKRGEDMLEFGGYFIVNGNEKVI---- 166
Query: 210 QICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKF--------ED----------IK 251
R+ + + +A+K R++ + R D + + +D +
Sbjct: 167 -----RMLIVPKRNFPIAFK----RSKFLERGKDFTDYGVQMRCVRDDFTAQTITLTYLS 217
Query: 252 GGEKVLSVYFLSTE--IPIWILFFALGVSSDKEIVNLI---DFTCEDCS--ILNILFA-- 302
G L + + E IPI ++ AL +D++I I +F S + IL
Sbjct: 218 DGSVSLRLIYQKQEFLIPIILILKALKNCTDRQIYERIVKGNFNQRQISDRVEAILAVGK 277
Query: 303 --SIHDADNK----CDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLFPS----LH 352
+I+D+D FR ++ G T T + LF S +H
Sbjct: 278 DLNIYDSDQSKALIGSRFRI----------VLAGIT----SETSDIDAGDLFLSKHICIH 323
Query: 353 GTKQKARF--LGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELK------VHI 404
+A+F L M+ L + + + DN D + + L G L + L +HI
Sbjct: 324 TDSYEAKFDTLILMIDKLYASVANEVELDNLDSVAMQDVLLGGHLYLQILSEKLFDCLHI 383
Query: 405 AHARKRMAKALQRDLYGDRTVRPIEYYLDASILTN-------GL--SRAFSTGAWSHPFK 455
+ R R+ K L+R + R +LTN GL R + A +
Sbjct: 384 -NLRARLNKELKRHNFDPMKFR--------DVLTNQKINCGIGLIGKRMENFLATGNLIS 434
Query: 456 RTE----RISGIVANLGRANPLQTLVDLRRT-RQQVQYTGKVGDARYPHPSHWGKICFLS 510
RT + SG + N ++ L R R Q K R P WG IC +
Sbjct: 435 RTNLDLMQTSGFCIIGDKLNNIRFLSHFRSIHRGQYFAEQKTTSVRKLLPESWGFICPVH 494
Query: 511 TPDGENCGLVKNLGVTGLVSTSILEPI----FEQLFNS-GMEKLADDASYSL-GGKFKVF 564
TPDG CGL+ ++ ++ + S + I F + GM ++ D + G + V
Sbjct: 495 TPDGAPCGLLNHISMSCVPIGSEEKQIDIDKFRNILGELGMNSISSDLCLNYHTGYYPVI 554
Query: 565 VDGDWIGVCKDSL--SFVSELR-----RKRRRKELPTQVEIKRDELQSEVR------IFM 611
DG +G + + SFV LR + + +P +EI R IF+
Sbjct: 555 FDGIHLGYVEKDIGESFVEGLRYLKCTQSQPDYAIPRTLEIAFIPFSGYSRNLQWPGIFL 614
Query: 612 DA--GRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLL 669
+ R RP+ KN L + IE + E+ + A
Sbjct: 615 ASTPARFTRPV--------------KN------LHYNCIEWISPLEQMNLSIAC------ 648
Query: 670 KDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPS 729
ED P + TH ELD +L + + FA ++ + R +YQ Q + Q +G P N
Sbjct: 649 -TDEDITP-ETTHQELDPINILSIVASVGVFAEYNQSPRNMYQCQM-AKQTMGTPYHNHQ 705
Query: 730 IRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQ 789
R D ++L +P RP+ +T Y +G NA+VAV + GY+
Sbjct: 706 FRTDNKIYRLLFPHRPIVKTRTQVDFDIEEYP-----------SGTNAVVAVISYTGYDL 754
Query: 790 EDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKR--RSSDDMVNFGKI----QSKIG 843
ED++++N++S ERG +SY +++ Q R +SS + +SKI
Sbjct: 755 EDAMIINKSSYERGFGHGVVYKSYTHDLNESNSQSTRGIKSSVRYKFLNNVSQKDKSKI- 813
Query: 844 RVDSLDDDGFPFIGANLQSG--DIVIGKYADSGADHSIKLKHTERGMVQKVVLSSNDDGK 901
+++++D DG P IG+ L G ++ I GA S K K +E+ ++ V + NDD
Sbjct: 814 KLENIDPDGLPKIGSQLTKGKPELCIFDTLKRGAKLS-KFKDSEKARIETVRVCGNDDKN 872
Query: 902 --NFSV-VSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFP 958
N S+ ++R R P +GDKFSS HGQKGVL L Q + PFT GI PD++INPHAFP
Sbjct: 873 PDNLSIGYTIRYSRIPVIGDKFSSRHGQKGVLSVLWPQVDMPFTENGITPDLIINPHAFP 932
Query: 959 SRQTPGQLLEAALGKGIAALGK-GICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTER 1017
SR T G L+++ K + G+ +RY V ++L GF+ G E
Sbjct: 933 SRMTMGMLIQSMAAKSGSLRGEFKTVETFQRYDD---NDIVGHFGKELLDKGFNYHGNEL 989
Query: 1018 LYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFG 1077
+Y G G +++ IFIG +YQRL HM DK + R TGP+ LT QPV RK+ GGI+FG
Sbjct: 990 MYSGIFGTPLKADIFIGVVYYQRLRHMVSDKSQARGTGPIDILTHQPVKGRKKGGGIRFG 1049
Query: 1078 EMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANV-IQRVVGGGRKVRGP---- 1132
EMERD L+AHGAA L++RLF SD + +C+ C ++ + + R + + P
Sbjct: 1050 EMERDSLLAHGAAYCLNDRLFRSSDYSEGFVCQNCGSILSCYVNRAIMKTQTFIPPSLDE 1109
Query: 1133 ----------------YCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKF 1168
C++C + K +P+ + L EL SMGI LKF
Sbjct: 1110 SNKDTEDKEIHMNEKVICKVCKKNSNCKKVALPFVLRFLANELASMGIKLKF 1161
>sp|O74633|RPA2_NEUCR DNA-directed RNA polymerase I subunit RPA2 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 /
FGSC 987) GN=acr-2 PE=1 SV=2
Length = 1234
Score = 306 bits (785), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 314/1212 (25%), Positives = 506/1212 (41%), Gaps = 194/1212 (16%)
Query: 72 DPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQF 131
DP K + RY S+ + + + +A N ++FP R ++++Y ++ ++
Sbjct: 83 DPQGKNKLTIRYKSIELQKSQVPPTNRWAKN----REIFPAECRERHVSYRGKLSATFEY 138
Query: 132 QVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEK 185
++ G +E +G++P+MVKS+ C ++ V +
Sbjct: 139 RI-----------NDGEPHEFVRE----------LGQMPIMVKSNKCHLQNNSPAQLVAR 177
Query: 186 GDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSNSMGWTVAYKSENKRNR--------L 237
+ + GGYFI+ G EK L R+ + N + +A + +NR +
Sbjct: 178 KEESEELGGYFIVNGIEK---------LIRMLLVNRRNFPLAIVRPSFQNRGASYTPYGI 228
Query: 238 IVRLV------DMSKFEDIKGGEKVLSVYFLSTE--IPIWILFFALGVSSDKEIVNLIDF 289
I+R V + + G + E IP+ ++ AL ++D+EI +
Sbjct: 229 IMRSVRPDETSQTNVLHYLSDGNVTFRFSWRKNEYLIPVMMIMKALVETNDREIFEGLVG 288
Query: 290 TCEDCSILNILFAS----IHDADNKCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNT 345
+ + N + K + K + K P S E
Sbjct: 289 PPQSKGVANTFLTDRVELLLRTYKKYGLYSKTQTRAYLGQKFRVVLGVPDTMSDYEVGTE 348
Query: 346 YL-------FPSLHGTKQ----KARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGE 394
+L S T+Q K L +M + L +G DN D +N+ + L G
Sbjct: 349 FLRKIVLVHLGSQDVTEQQDADKFNMLLFMCRKLYALVAGDCAVDNPDAVQNQEILLGGF 408
Query: 395 LLERELKVHIAHARKRMAKALQRD-LYGDRTVR----------PIEYYLDAS-ILTNGLS 442
L + +K + +A RD L + TV PI + A+ + L
Sbjct: 409 LYGQIIKERLEELLTVSFRASLRDYLRRNPTVSFQSDTFLKDFPIAIFRRANENIGQSLE 468
Query: 443 RAFSTGAWSHPFK-RTERISGIVANLGRANPLQTLVDLRRTRQQVQYTG-KVGDARYPHP 500
STG P +++SG + N L+ + R + + K R P
Sbjct: 469 YFLSTGNLVSPSGLDLQQVSGFTVVAEKLNFLRFISHFRMVHRGSFFAQLKTTTVRKLLP 528
Query: 501 SHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILEP--IFEQLFNSGMEKLADDASYSLG 558
WG +C + TPDG CGL+ +L + T ++ I F G+ ++ A+
Sbjct: 529 ESWGFLCPVHTPDGSPCGLLNHLAHKCKIMTESVDASTISRLAFELGVVNISSAATSE-- 586
Query: 559 GKFKVFVDGDWIGVC--KDSLSFVSELRRKRRRKE--LPTQVEI---KRDELQSEVRIFM 611
V +DG +G C ++ S LR + E +P Q+EI S ++M
Sbjct: 587 -SVVVMLDGRIVGWCTPEECKSIAETLRYWKVNGENGVPLQLEIGYVPPSNGGSYPGLYM 645
Query: 612 DA--GRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLL 669
+ R++RP +K L + F + + + TE+E
Sbjct: 646 SSQPARMVRP---------VKYLPLQKEDFVGPQEQPYMSIACTEQE------------- 683
Query: 670 KDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPS 729
P TH E D + +L + + PF++ + + R +YQ Q Q +G P T +
Sbjct: 684 -----VIPGDSTHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQM-GKQTMGTPATALA 737
Query: 730 IRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQ 789
R D ++L Q P+ R + + YG ++ NG NA+VAV + GY+
Sbjct: 738 HRTDNKMYRLQTGQTPVVRAPLHNT-----YGFDN------FPNGMNAVVAVISYTGYDM 786
Query: 790 EDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQS-KIGRVDSL 848
+D++++N+++ ERG ++ K + + +S M F + + D L
Sbjct: 787 DDAMILNKSAHERGFGHGSIYKTKKVSLKDDSRTRSAKSIVKMFGFAPNSTIRESTRDML 846
Query: 849 DDDGFPFIGANLQSGDIVIGKYADS-----------GADHSIKLKHTERGMVQKVVLSSN 897
D+DG P +G L+ GD++ + S G H + K +E V++V +
Sbjct: 847 DNDGLPRVGRLLREGDVICAWHTVSADYNGQLVNRDGVTHYERYKDSEDAFVEEVRVIGA 906
Query: 898 DDG-KNFSVVS--LRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINP 954
D+G + VS LR RSP +GDKFSS HGQKGVL + PF+ GI PD++INP
Sbjct: 907 DNGTEPLQTVSIKLRIPRSPVIGDKFSSRHGQKGVLSQKWPATDMPFSETGIQPDVIINP 966
Query: 955 HAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPF----ATPSVDAITEQLHRAGF 1010
HAFPSR T G +E+ GK G GL + +TPF + D QL +AG+
Sbjct: 967 HAFPSRMTIGMFVESLAGKA------GALHGLAQDSTPFKFDEQNTAGDYFGHQLMKAGY 1020
Query: 1011 SKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKR 1070
+ G E LY G TGE ++ I+IG +YQRL HM DK + R TGPV P T QP+ RK+
Sbjct: 1021 NYHGNEPLYSGITGEEFQADIYIGVVYYQRLRHMVNDKYQVRTTGPVVPTTGQPIKGRKK 1080
Query: 1071 FGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVAN---VIQRVVGGGR 1127
GGI+ GEMERD L+AHG + L +RL SD + +CR+C + + + +G +
Sbjct: 1081 GGGIRVGEMERDALLAHGTSFLLQDRLLNCSDYSKSWMCRQCGSFLSTQPTVSPFIGKRK 1140
Query: 1128 KVRGPYCRICD----------------------------SGDDIVKANVPYGAKLLCQEL 1159
V CR C G++ VP K L EL
Sbjct: 1141 AVSTVRCRNCAVRLDDMEDVDLMQIDGEIWEDGSGTQWIGGENTTIVAVPGALKYLDVEL 1200
Query: 1160 FSMGITLKFDTE 1171
+MGI LK+ +
Sbjct: 1201 AAMGIKLKYKVD 1212
>sp|P22138|RPA2_YEAST DNA-directed RNA polymerase I subunit RPA135 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPA135 PE=1
SV=1
Length = 1203
Score = 297 bits (760), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 302/1190 (25%), Positives = 522/1190 (43%), Gaps = 187/1190 (15%)
Query: 85 SMRFGQVTLDKPSFFAG-NGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDK 143
S+ QV++ KP G + E ++P +R + +Y ++ +K+++ V
Sbjct: 96 SVSVEQVSIAKPMSNDGVSSAVERKVYPSESRQRLTSYRGKLLLKLKWSV---------- 145
Query: 144 FKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFI 197
G E + + D G +PVM++S+ C + V+ + + GGYFI
Sbjct: 146 -NNGEENLFE---VRD------CGGLPVMLQSNRCHLNKMSPYELVQHKEESDEIGGYFI 195
Query: 198 IKGAEKV---FVAQEQ---ICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIK 251
+ G EK+ + Q + + + R +N G + ++ R+ + + +
Sbjct: 196 VNGIEKLIRMLIVQRRNHPMAIIRPSFANR-GASYSHYGIQIRSVRPDQTSQTNVLHYLN 254
Query: 252 GGEKVLSVYFLSTE--IPIWILFFALGVSSDKEIVN-LIDFTCEDCSILNILFASIHDAD 308
G+ + E +P+ ++ AL +SD+EI + +I +D + + L +
Sbjct: 255 DGQVTFRFSWRKNEYLVPVVMILKALCHTSDREIFDGIIGNDVKDSFLTDRLELLLRGFK 314
Query: 309 NKCDEFRKGRNALKYV-DKLIKGTTFPPGEST----EECMNTYLFPSL--HGTKQKARFL 361
+ + L+Y+ DK P +S +E ++ + L G++ K R L
Sbjct: 315 KRYPHLQNRTQVLQYLGDKFRVVFQASPDQSDLEVGQEVLDRIVLVHLGKDGSQDKFRML 374
Query: 362 GYMVKCLLQAYSGRRKCDNRDDFRNKRLELAG--------ELLERELKVHIAHARKRMAK 413
+M++ L +G DN D +++ + L G E ++ L+ IA R + +
Sbjct: 375 LFMIRKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKEKIDEYLQNIIAQVRMDINR 434
Query: 414 ALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAW-SHPFKRTERISGIVANLGRANP 472
+ + R + + ++ +I + + STG S +++SG + N
Sbjct: 435 GMAINFKDKRYMSRVLMRVNENIGSK-MQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINF 493
Query: 473 LQTLVDLRRTRQQVQYTG-KVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST 531
+ + R + + K R P WG +C + TPDG CGL+ + +ST
Sbjct: 494 YRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKCRIST 553
Query: 532 --SILEPIFEQLFNSGMEKLADDASYSLGGKFK-VFVDGDWIG--------VCKDSLSFV 580
S + I L++ G+ + +++ G V +DG IG + D+L +
Sbjct: 554 QQSDVSRIPSILYSLGVAPASH--TFAAGPSLCCVQIDGKIIGWVSHEQGKIIADTLRY- 610
Query: 581 SELRRKRRRKELPTQVEIKRDELQSE-----VRIFMDAGRILRPLLVVENMGKIKSLEGK 635
+ + + LP +EI + + +F R+LRP+ +
Sbjct: 611 --WKVEGKTPGLPIDLEIGYVPPSTRGQYPGLYLFGGHSRMLRPVRYLP----------- 657
Query: 636 NYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSC 695
LD ++VG E+ I ++I++ TH E + +L +
Sbjct: 658 -------LDKE--DIVGPFEQ----VYMNIAVTPQEIQNNV---HTHVEFTPTNILSILA 701
Query: 696 GIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCL 755
+ PF++ + + R +YQ Q Q +G P R D ++L Q P+ + + D
Sbjct: 702 NLTPFSDFNQSPRNMYQCQM-GKQTMGTPGVALCHRSDNKLYRLQTGQTPIVKANLYDDY 760
Query: 756 GKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERG-----MFRSEHI 810
G + NG NA+VAV + GY+ +D++++N+++ ERG M+++E +
Sbjct: 761 GMDNFP-----------NGFNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKTEKV 809
Query: 811 RSYKAEVDNKEMQVKRRSSDDMVN---FGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVI 867
++ + R D + FG + ++ LD+DG P+IG ++ GD +
Sbjct: 810 ----------DLALNRNRGDPITQHFGFGNDEWPKEWLEKLDEDGLPYIGTYVEEGDPIC 859
Query: 868 GKYADSGADHSIKLKHT-ERGMVQKVVLSSNDDGK--NFSVVSL--RQVRSPCLGDKFSS 922
+ D+ IK H+ E +++V L ++ K VS+ R R+P +GDKFSS
Sbjct: 860 AYFDDTLNKTKIKTYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRTPQIGDKFSS 919
Query: 923 MHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGI 982
HGQKGV + PF+ GI PDI+INPHAFPSR T G +E+ GK G
Sbjct: 920 RHGQKGVCSRKWPTIDMPFSETGIQPDIIINPHAFPSRMTIGMFVESLAGKA------GA 973
Query: 983 CSGLKRYATPFA-----TPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTF 1037
G+ + +TP+ TP+ D EQL +AG++ G E +Y G TGE +R+ I++G +
Sbjct: 974 LHGIAQDSTPWIFNEDDTPA-DYFGEQLAKAGYNYHGNEPMYSGATGEELRADIYVGVVY 1032
Query: 1038 YQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERL 1097
YQRL HM DK + R+TGPV+ LT QPV RKR GGI+ GEMERD LI HG + L +RL
Sbjct: 1033 YQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRL 1092
Query: 1098 FTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICD------------------- 1138
SD Q +CR+C ++ Q V G + CR C
Sbjct: 1093 LNSSDYTQASVCRECGSILTTQQSVPRIG-SISTVCCRRCSMRFEDAKKLLTKSEDGEKI 1151
Query: 1139 -----------------SGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
G++ +P+ K L EL +MGI L+++ E
Sbjct: 1152 FIDDSQIWEDGQGNKFVGGNETTTVAIPFVLKYLDSELSAMGIRLRYNVE 1201
>sp|Q75DS1|RPA2_ASHGO DNA-directed RNA polymerase I subunit RPA2 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=RPA2 PE=3 SV=2
Length = 1196
Score = 294 bits (753), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 310/1188 (26%), Positives = 512/1188 (43%), Gaps = 184/1188 (15%)
Query: 85 SMRFGQVTLDKPSFFAG-NGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDK 143
++ QV+L KP G E ++FP AR + TY ++ +K+ + V
Sbjct: 90 ALSVTQVSLTKPMSNDGVTAAAERNVFPAEARKRLTTYRGKLLLKLNWSV---------- 139
Query: 144 FKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFI 197
G E + EV G +PVM++S+ C + VE + + GGYFI
Sbjct: 140 -NDGEETF--SEVRD-------CGPLPVMLQSNRCHLHKMSPQELVEHKEESDELGGYFI 189
Query: 198 IKGAEKV---FVAQEQ---ICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIK 251
+ G EK+ + Q + + + R +N G + ++ R + + +
Sbjct: 190 VNGIEKLIRMLIVQRRNHPMAIIRPSFANR-GTSYSHYGVQIRCVRPDQTSQTNVLHYLN 248
Query: 252 GGEKVLSVYFLSTE--IPIWILFFALGVSSDKEIVN-LIDFTCEDCSILNILFASIHDAD 308
G+ + E +P+ ++ AL +SD+EI + ++ + + + L +
Sbjct: 249 DGQVTFRFSWRKNEYLVPVVLILKALTDASDREIFDGIVGADTSNSFLTDRLELLLRGFK 308
Query: 309 NKCDEFRKGRNALKYV-DKLIKGTTFPPGEST----EECMNTYLFPSL-HGTKQKARFLG 362
+ + R L+Y+ DK P S +E + + L K+ L
Sbjct: 309 KRFPQLLNRRQVLQYLGDKFRVVLQASPDMSDYLVGQELLRRIVLVHLGDENTDKSNMLM 368
Query: 363 YMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGD 422
+M++ L +G DN D +++ + L G L +K I + + +Q D+ +
Sbjct: 369 FMIRKLYSLVAGECCPDNPDATQHQEVLLGGFLYGMIVKEKIEEYLQNIKLQIQADV--N 426
Query: 423 RTVRPIEYYLDASILTNGLSRA-----------FSTGAW-SHPFKRTERISGIVANLGRA 470
R + P+++ D +T L+R STG S +++SG +
Sbjct: 427 RGM-PVDFK-DRKYMTRVLTRINENIGSKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKI 484
Query: 471 NPLQTLVDLRRTRQQVQYTG-KVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLV 529
N + + R + + K R P WG +C + TPDG CGL+ + +
Sbjct: 485 NFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKCKI 544
Query: 530 ST--SILEPIFEQLFNSGMEKLA--DDASYSLGGKFKVFVDGDWIGVCK--------DSL 577
ST S + I L++ G+ A A SL V +DG +G C D+L
Sbjct: 545 STTQSDVSKIPTLLYSLGVSPAAHVTAAGPSLCC---VQLDGKIVGWCSHEQGRIVADTL 601
Query: 578 SFVSELRRKRRRKELPTQVEI------KRDELQSEVRIFMDAGRILRPLLVVENMGKIKS 631
+ + + + LP +EI KR + + +F R++RP ++
Sbjct: 602 RY---WKVEGKTDGLPLDLEIGYVPASKRGQYPG-LYLFGGHSRMMRP---------VRY 648
Query: 632 LEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLL 691
L + +++ T EE I++ TH E + +L
Sbjct: 649 LPLDKQDIVGPFEQVYMDIAVTPEE---------------IQNNV---HTHVEFSPTNIL 690
Query: 692 GLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751
+ + PF++ + + R +YQ Q Q +G P R D ++L Q P+ + +
Sbjct: 691 SILANLTPFSDFNQSPRNMYQCQM-GKQTMGTPGVALCHRSDNKLYRLQSGQTPIVKANL 749
Query: 752 SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIR 811
D G + NG NA+VAV + GY+ +D++++N+++ ERG +
Sbjct: 750 YDDYGMDNFP-----------NGTNAVVAVISYTGYDMDDAMIINKSADERGF---SYGT 795
Query: 812 SYKAEVDNKEMQVKRRSSDDMVN---FGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIG 868
YK E ++ + R D + FG + ++ LD+DG P IG+ ++ GD +
Sbjct: 796 VYKTE--KIDLSLSRGRGDPVTQHFGFGTDEWPKEWLEKLDEDGLPIIGSYVEEGDPICA 853
Query: 869 KYADSGADHSIKLKHT-ERGMVQKVVLSSNDDGK----NFSVVSLRQVRSPCLGDKFSSM 923
+ D+ IK H+ E +++V L ++ K + + R R P +GDKFSS
Sbjct: 854 YFDDTLNKTKIKTYHSSEPAYIEEVTLIGDESNKFQELQYITIKYRIRRVPQIGDKFSSR 913
Query: 924 HGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGIC 983
HGQKGV + PF+ GI PD++INPHAFPSR T G +E+ GK G
Sbjct: 914 HGQKGVCSRKWPTVDMPFSETGIQPDVIINPHAFPSRMTIGMFVESLAGKA------GAL 967
Query: 984 SGLKRYATPFA-----TPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFY 1038
G+ + ATP+ TP+ D +QL +AG++ G E +Y G TGE +R+ I+IG +Y
Sbjct: 968 HGIAQDATPWTFSEEDTPA-DYFGDQLLKAGYNYHGNEPMYSGATGEELRADIYIGVVYY 1026
Query: 1039 QRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLF 1098
QRL HM DK + R+TGPV+ LT QPV RKR GGI+ GEMERD LI HG + L +RL
Sbjct: 1027 QRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLL 1086
Query: 1099 TLSDSYQMHICRKCKNVANVIQRV--VGGGRKVRGPYCRIC-----------DSGDDI-- 1143
SD Q +CR+C ++ V +G +R C I DS D I
Sbjct: 1087 NSSDYTQSAVCRECGSILTTQSSVPKIGSMVTIRCRRCAISFDEAKKIITQQDSEDSIFI 1146
Query: 1144 --------------------VKANVPYGAKLLCQELFSMGITLKFDTE 1171
+P+ K L EL +MGI L+++ +
Sbjct: 1147 DDSHIWEDGQGNKFVGGGNTTTVAIPFVLKYLDSELAAMGIRLRYNVD 1194
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 456,294,318
Number of Sequences: 539616
Number of extensions: 20564595
Number of successful extensions: 49897
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 41629
Number of HSP's gapped (non-prelim): 4571
length of query: 1173
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1044
effective length of database: 121,958,995
effective search space: 127325190780
effective search space used: 127325190780
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 67 (30.4 bits)