Query 001050
Match_columns 1173
No_of_seqs 208 out of 1924
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 08:27:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001050.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001050hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h0g_B DNA-directed RNA polyme 100.0 4E-291 1E-295 2725.3 41.6 1115 19-1171 10-1207(1210)
2 1twf_B DNA-directed RNA polyme 100.0 2E-285 7E-290 2706.5 74.1 1115 19-1171 23-1219(1224)
3 4ayb_B DNA-directed RNA polyme 100.0 3E-264 1E-268 2528.5 70.6 1069 15-1171 2-1119(1131)
4 2a6h_C DNA-directed RNA polyme 100.0 2E-226 7E-231 2115.1 48.9 929 25-1171 4-1104(1119)
5 3lu0_C DNA-directed RNA polyme 100.0 1E-213 4E-218 1971.9 46.6 932 26-1169 14-1340(1342)
6 3mlq_A DNA-directed RNA polyme 100.0 1.7E-29 5.8E-34 262.7 8.9 123 38-218 2-134 (188)
7 3tbi_B DNA-directed RNA polyme 99.3 4.3E-12 1.5E-16 133.5 6.7 85 808-898 2-108 (228)
8 3qqc_A DNA-directed RNA polyme 99.1 4.8E-11 1.7E-15 139.8 4.2 62 1103-1171 2-63 (436)
9 3lti_A DNA-directed RNA polyme 98.8 3.1E-08 1.1E-12 109.3 12.0 67 211-288 4-78 (296)
10 3mlq_A DNA-directed RNA polyme 96.2 0.0014 4.6E-08 68.4 1.9 61 384-447 121-181 (188)
11 1yuz_A Nigerythrin; rubrythrin 35.4 16 0.00056 38.2 2.5 29 1102-1140 167-195 (202)
12 1gh9_A 8.3 kDa protein (gene M 29.9 9.3 0.00032 33.3 -0.5 31 1104-1143 2-32 (71)
13 3pwf_A Rubrerythrin; non heme 24.5 39 0.0013 34.3 2.9 26 1105-1140 137-162 (170)
14 1lko_A Rubrerythrin all-iron(I 20.9 24 0.00082 36.5 0.5 30 1102-1140 151-180 (191)
No 1
>3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.3e-291 Score=2725.30 Aligned_cols=1115 Identities=37% Similarity=0.607 Sum_probs=994.7
Q ss_pred cccchhhhhhhcccccCcCCchHHHHHHHHHHHHhHHHHHhcccCceEeCCCCCCCCCCCCcceeEEEEEceEEEccCcc
Q 001050 19 EEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSF 98 (1173)
Q Consensus 19 ~~~~~~~~~~~i~~~f~~~~Lv~~qi~SFN~Fi~~gL~~ii~~~~pI~~~~~~~~~~~~~~~~~~~~l~f~~i~i~~P~~ 98 (1173)
++++++|+|.+|++||+.+||++|||||||+|+++||++|++++++|+++.+.++...+......+.|+|++++|++|++
T Consensus 10 ~~~~~ed~w~li~aff~~~gLV~qHIdSFN~FI~~~Lq~IV~~~~~I~~~~~~~~~~~~~~~~~~~~l~f~~i~v~kP~~ 89 (1210)
T 3h0g_B 10 ETLTQEDCWTVISSFFEETSLARQQLFSFDEFVQNTMQEIVDDDSTLTLDQYAQHTGAQGDVTRRYEINFGQIYLSRPTM 89 (1210)
T ss_dssp CCCCHHHHHHHHHHHHHHTCTTCSSSSSSSSSTTTTHHHHSSTTCCCC-------------------CEEEEEECCCCCC
T ss_pred ccCCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhHHHHHhccCcEEecCccCcccccccCCceEEEEEEEEEEcCCce
Confidence 45899999999999999999999999999999999999999999999876543221111122346889999999999999
Q ss_pred ccCCCCCcCCCChhhHHhcCCcccceEEEEEEEEEeeccccccccccccccceeeccccccceeEEEecccceEecCCcc
Q 001050 99 FAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLC 178 (1173)
Q Consensus 99 ~e~~~~~~~~l~P~ecR~r~~TYsa~l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lG~IPIMvkS~~C 178 (1173)
.+.+ +..++|||+|||+|++||+|||+|+|++++.+.. ++..++...............++.||+|||||||++|
T Consensus 90 ~e~d-~~~~~l~P~EcRlR~lTYsapl~Vdi~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~IG~iPIMlrS~~C 164 (1210)
T 3h0g_B 90 TEAD-GSTTTMFPQEARLRNLTYSSPLYVDMRKKVMVAA----DSNVPIGEEEWLVEEEDEEPSKVFIGKIPIMLRSTFC 164 (1210)
T ss_dssp BCTT-SCBCCCCTTTTTTTCCCCEEEEEEEEEC-------------------------CCSSCCCEEEEEEECCSSSTTS
T ss_pred ecCC-CcccccCHHHHHhcCCccceeEEEEEEEEEcCcc----ccccccccccccccccccccceEEEecCCEEeCCCcc
Confidence 9887 7889999999999999999999999999874310 0000000000000000122467999999999999999
Q ss_pred ccCC------CcCCCCcCCCCcEEEEeCcEEEeEeeeeeccceEEE-ecCC----ceEEEEEeecCC-c----eEEEEEE
Q 001050 179 WMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNSM----GWTVAYKSENKR-N----RLIVRLV 242 (1173)
Q Consensus 179 ~L~~------~~~gE~~~D~GGYFIING~ERVIi~Qe~~spnr~~i-~~~~----~~~a~irS~~~~-~----~~~i~~~ 242 (1173)
||++ ++.||||+||||||||||+|||||+||++|+|++++ .+++ .|.|++||..++ + .+.+++.
T Consensus 165 ~L~g~s~~eL~~~gEcp~D~GGYFIING~EKVII~qerla~N~~iv~~~~~~~~~~~~a~irS~~~~~~~~~s~~~v~~~ 244 (1210)
T 3h0g_B 165 ILNGVSDSELYDLNECPYDQGGYFIINGSEKVIIAQERSAANIVQVFKKAAPSPIAYVAEIRSALERGSRLISSMQIKLM 244 (1210)
T ss_dssp SSSSCCHHHHHHTTCCTTCCCCCBCGGGSCBCCCBCBCCCCSCCCCCCCCCSSSCCCCCCCCCCCCSSSCCCCCCCCCCC
T ss_pred cCCCCCHHHHHhcCCCCCCCCCEEEEeCEEEEEEechhhccceEEEEeecCCCCceEEEEEEEEecCCccceeEEEEEEE
Confidence 9999 789999999999999999999999999999999998 4332 578999988875 2 2233332
Q ss_pred ecCccccccCCEEEEEEeeccccccHhhHHHHhcCCChHHHHHHhcCCCCchHHHHHHHHhhHhhhccCCcCCCHHHHHH
Q 001050 243 DMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALK 322 (1173)
Q Consensus 243 ~~~~~~~~~~~~i~v~i~~~k~~IPl~illrALG~~sD~eI~~~i~~~~~d~~~~~~l~~~l~~~~~~~~~i~t~e~al~ 322 (1173)
.... . .+++.+++++++++.+||+++||||||.+||+||++.|+++.+|.++.++|+.+++++ ..++||++||+
T Consensus 245 ~~~~-~-~~~~~i~~~~~~~~~~IPi~ivlkALg~~sD~EI~~~I~~~~~d~~~~~~l~~slee~----~~i~tq~~aL~ 318 (1210)
T 3h0g_B 245 ARNT-E-NSGQTIRATLPYIRSDIPIVIVFRALGVVPDRDILEHICYDPNDFQMLEMMKPCIEEA----FVIQDKDIALD 318 (1210)
T ss_dssp CCCT-T-SCSCCCCCCCTTSCSCCCSHHHHTTTTCCSTTHHHHHHCCSSCCHHHHHTHHHHHHTT----SSCCSSHHHHH
T ss_pred eccc-c-CCCceEEEEEeccccCCcHHHHHHHcCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHh----hhcCCHHHHHH
Confidence 1100 0 1257899999999999999999999999999999999998878889999999999987 34899999999
Q ss_pred HHHhhccCC---CCCChhhHHHHHhhcccCcCCCcc----cccchHHHHHHHHHhhccCCCCCCCcccccCcEEeehhhh
Q 001050 323 YVDKLIKGT---TFPPGESTEECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGEL 395 (1173)
Q Consensus 323 yig~~~~~~---~~~~~e~~~~~L~~~llpHl~~~~----~K~~~L~~Mi~kLl~~~~g~~~~DD~D~l~nkRv~l~G~L 395 (1173)
|||++|+.. +..+.++|+++|++++||||+... +|+.||++|+||||+++.|.+.+||+|||+||||+++|+|
T Consensus 319 yIG~r~~~~~~~~~~~~~~a~~iL~~~lLpHl~~~~~~~~~Ka~fL~~MvrkLl~~~~G~~~~Dd~D~~~nkrl~l~G~L 398 (1210)
T 3h0g_B 319 YIGKRGSTTGVTREKRLRYAHDILQKELLPHITTMEGFETRKAFFLGYMIHRMLLCALERREPDDRDHFGKKRLDLAGPL 398 (1210)
T ss_dssp TTCCCSSSCCCCHHHHHHHHHHHHTTTSSCSSCCSSSCCSSHHHHHHHHHHHHHHHHTTSSCCCCTTCSSSCCBCCHHHH
T ss_pred HHHHhccccCCCchhHHHHHHHHHHhhEEeCcCCCccchhHHHHHHHHHHHHHHHHhCCCCCCCCCccccCeEEecHHHH
Confidence 999999642 334578999999999999999876 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCcccccccccccccchhhccccccccccccccCccccccccceeecCCCChhhh
Q 001050 396 LERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQT 475 (1173)
Q Consensus 396 l~~lfr~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~i~~~~It~~i~~~~sTGnw~~~~~~~~q~sGvSQvldRlN~ls~ 475 (1173)
|+.+||+.|+++++.+++.+++.+.+.+.+ ++..+++++.||++|+||||||||+.++..+++++||||+|+|+||+|+
T Consensus 399 l~~lfr~~~~~~~~~i~~~l~k~~~~~~~~-~~~~~i~~~~It~~l~~~laTGNW~~~kk~~~~~sGvsqvl~R~n~~s~ 477 (1210)
T 3h0g_B 399 LASLFRMLFRKMTRDVYKYMQKCVETNREF-NLTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYTFAST 477 (1210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSC-CCTTSSCSTTTSHHHHHHHSSSCSSTTSSCCSCCCCSCCBCCCSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCcc-CHHHhcchhhhHHHHHHHhhcCCcccccccccCcCCEEEEcccCCHHHH
Confidence 999999999999999999999988777777 7888899999999999999999999988888899999999999999999
Q ss_pred hccccccccccccCCcccccCCCCCCCcceeeecCCCCCcccccccccceeeeeecCc-chhHHHHHHhcCceecccccC
Q 001050 476 LVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-LEPIFEQLFNSGMEKLADDAS 554 (1173)
Q Consensus 476 lSh~Rrv~s~~~~~~k~t~vR~Lhps~wG~iCPveTPEG~~cGLvk~LA~~a~It~~~-~~~i~~~l~~~g~~~~~~~~~ 554 (1173)
|||||||++|+++++|+++||+||||||||+||+|||||++||||||||++|.||++. ++|+.++|.++||++++++.+
T Consensus 478 lShlRrv~~p~~~~~K~~~~R~Lhpt~WG~iCP~eTPEG~~cGLvknLal~~~Isvg~~~~pI~~~l~~~gme~le~~~~ 557 (1210)
T 3h0g_B 478 LSHLRRTNTPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSAPIIEFLEEWGLETLEDYNP 557 (1210)
T ss_dssp HHHTTBBCCSCCSSCCSSSSSSCCGGGTTTCCCSCCCSSSSTTTSCBCCSSCCBCCCCCSSHHHHHHHSSSCCCCSCCCS
T ss_pred HHHHHhccCchhhccccccccccChhhheeeccccCCCCCcccccccccceeeeECCCCcHHHHHHHHHhCCcchhhcCc
Confidence 9999999999999999999999999999999999999999999999999999999988 999999999999999998877
Q ss_pred ccCCCcceeeeccEEEEEecChhHHHHHHHHHHhcCCCCceEEEEEeccCCeEEEeecCCeeeeeEEEeecc-------c
Q 001050 555 YSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENM-------G 627 (1173)
Q Consensus 555 ~~~~~~~~VflnG~~iG~~~~~~~~~~~lR~~rr~~~i~~~~~i~~~~~~~~i~I~sd~GRl~RP~l~v~~~-------~ 627 (1173)
...++.++|||||+|+|++++|..|++.||.+||+|.|+.++||++|...++++||||+||+||||++|+|+ +
T Consensus 558 ~~~~~~tkVfvNG~wVGvh~dp~~Lv~~lR~lRR~g~Is~eVSIvrdir~rE~~IfTDaGRv~RPLfvVen~~~~~~~g~ 637 (1210)
T 3h0g_B 558 SASPNATKVFVNGVWLGVHRDPAHLTETLRSLRRRLDISAEVSIVRDIREKELRLFTDAGRICRPLFIVDNNPNSERRGE 637 (1210)
T ss_dssp SSSSSSCCCCSTTCCCCCCSCHHHHHHHHHHHHTTTSSCTTCCCCCCTTTCCCCCCCSSCCBCCEEEECCCSSCSSSSCC
T ss_pred ccCCCceEEEECCEEEEEeCCHHHHHHHHHHHhhcCCCCCceEEEecCCCCeEEEecCCCcccceEEEEccCCccccccc
Confidence 777788999999999999999999999999999999999999999999999999999999999999999985 2
Q ss_pred ------cccccc----------CCcchhHhhhhcCceeeecccccceeEEeeccccccccc-------------------
Q 001050 628 ------KIKSLE----------GKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDI------------------- 672 (1173)
Q Consensus 628 ------~~~~~~----------~~~~~~~~l~~~g~iE~id~~Eq~~~~Ia~~~~~~~~~~------------------- 672 (1173)
++..+. ...++|++|++.|+|||||++||++++||++++|+..+.
T Consensus 638 L~l~k~hi~~L~~~~~~~~~~~~~~~~w~~Lv~~GvIEylDaeEEet~mIamtpeDL~~~r~~~~g~~~~~~~d~~~r~k 717 (1210)
T 3h0g_B 638 LCIRKEHIQQLIEDKDRYDIDPEQRFGWTALVSSGLIEYLDAEEEETVMIAMSPEDLEASRQMQAGYEVKEELDPAQRVK 717 (1210)
T ss_dssp CSSCHHHHHHHHHHHTCCCSCTTCCCSSTTTTTTTSEEECCTTTGGGCCEESCHHHHHHHHHHTTCCCCCCSSCCSSCCC
T ss_pred ccccHHHHHHHhcccccccccccccCCHHHHHhCCCEEEecHhhhhceeEEecHHHhhhhhhhhccccccccccchhhcc
Confidence 111111 234799999999999999999999999999999985411
Q ss_pred --CCCCCceeeeecccccccccceeecccccCCCccchhhhhhcccccccccccccCCeeeeeccccccccCCcceEecc
Q 001050 673 --EDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTM 750 (1173)
Q Consensus 673 --~~~~~~~~th~Ei~p~~ilgv~aslIPF~~hNqspRn~yqc~~M~KQaig~~~~n~~~r~D~~~~~l~ypQ~Plv~t~ 750 (1173)
.+.....||||||||++|||+|||+||||||||||||||||| |||||||++++|+..|+||++|+|+|||+|||+|+
T Consensus 718 ~~~~~~~~~~THcEIhPsmILGIcASiIPFpdHNQSPRNtYQ~a-MgKQamG~~~~n~~~R~Dt~~~~L~yPQkPlv~T~ 796 (1210)
T 3h0g_B 718 PAPNPHVHAWTHCEIHPAMILGILASIIPFPDHNQSPRNTYQSA-MGKQAMGVYLTNYQVRMDTMANILYYPQKPLATTR 796 (1210)
T ss_dssp CCSCCSCCSCSEECSCGGGSSCSSSTTSSSSTTSCSHHHHHHHH-HHTTCCSCCCTTTTTSCCSSEEEESSCBCCSSBCT
T ss_pred ccCCCcccccccccccchhhhhheeecccCccccccchhhhhhh-hhcccccccccccccccCccccEeecCcCccccch
Confidence 011245799999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred ccccccCCcccCCCCCCCCCccCCcccEEEEEecCCCCCCCeEEEecceeecCceEEEEEEEEEEEeeeccccccccccc
Q 001050 751 ISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSD 830 (1173)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~~~G~N~~VAv~~~~Gyn~EDaiiin~~~~~rg~f~s~~~~~~~~~~~~~~~~~~~e~~~ 830 (1173)
.++++ +++|+|+|+||+||||||+||||||||||||+|+|||||||+||++|+.++++++. +..+.|+
T Consensus 797 ~~e~~-----------~~~elp~G~NaiVAvmsy~GYn~EDAiIink~sv~rg~~~s~~~~~y~~~~~~~~~-~~~~~~~ 864 (1210)
T 3h0g_B 797 SMEYL-----------KFRELPAGQNAIVAILCYSGYNQEDSIIMNQASIDRGLFRSIFYRTYTDQEKKIGM-TVMEEFE 864 (1210)
T ss_dssp TSTTT-----------TCTTSCSCCEECBEECCCSSSSCSSCEEEEHHHHTTTTTCEEEEEEEEECCCCCSS-SCCCCCC
T ss_pred hHHHh-----------CCCcccCccceEEEEeccCCCChhhheeeehhheecCceEEEEEEEEEEEeeecCC-CceeEEc
Confidence 99999 99999999999999999999999999999999999999999999999999887653 3467788
Q ss_pred cccccccccccccccCCCCCCCCcccCcEEccCCeEEEEecCC---------------CceeeEEccCCCceEEEEEEEE
Q 001050 831 DMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADS---------------GADHSIKLKHTERGMVQKVVLS 895 (1173)
Q Consensus 831 ~~~~~~~~~~~~~~~~~Ld~dGi~~~g~~v~~gdili~k~~~~---------------~~~~s~~~~~~~~g~v~~v~~~ 895 (1173)
.|........+.+.|++||+||||+||++|++|||||||++|. .+|+|++++++|.|+||+|.++
T Consensus 865 ~p~~~~~~~~~~~~~~~LD~dGi~~~G~~v~~gDiligK~~p~~~~~~~~~~~~~~~~~rd~s~~~~~~e~g~Vd~V~~~ 944 (1210)
T 3h0g_B 865 RPVRSTTLRMKHGTYDKLEDDGLIAPGTRVSGEDIIIGKTAPIPLDHEELGQRTQLHAKRDVSTPLRSTESGIVDQVMVT 944 (1210)
T ss_dssp CCCTTSCCSCCSCCGGGCCTTSSCCTTCCCCTTCCCCCCCCCC-----------CCCCCCCCCCCCCTTCCCCCCEEEEE
T ss_pred CCCcchhcccchhhHhhcCCCCCcCCCCEecCCCEEEEEecCCCCCchhhcccccccccceeeEEecCCCCeEEEEEEEE
Confidence 7776544334456799999999999999999999999999874 4789999999999999999999
Q ss_pred eCCCCCeEEEEEEeeccCCCccccccccCCCceEEeeeecCCCcCCCCCCCcCcEEeCCCCCCCCCChHHHHHHHHHHHH
Q 001050 896 SNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGI 975 (1173)
Q Consensus 896 ~~~~~~~~~~v~~r~~R~~~iGDK~ssRhGqKGvvs~i~~~~dmPf~~~G~~pDiI~NPh~~PSRMtiGql~E~~~gk~~ 975 (1173)
.+++|.+.|||++|+.|+|++|||||||||||||||+|||+|||||++||++|||||||||||||||||||+|+++||||
T Consensus 945 ~~~~g~~~vkv~~~~~R~~~~GDK~a~RhGqKGvi~~i~~~edmPf~~~G~~pDii~NP~~~PSRMtigq~~E~~~g~~~ 1024 (1210)
T 3h0g_B 945 TNQEGLKFVKVRMRSTRIPQIGDKFASRHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHAIPSRMTVAHLVECQLSKVS 1024 (1210)
T ss_dssp ECSSSSEEEEEEECCCBCCCTTCEEECTTCCCEEEEEEECTTTSCCBTTTBCCSEECCGGGSTTSCCHHHHHHHHHHHHS
T ss_pred EecCCCeEEEEEEEEecCCCchhhhhcccCCCceeeEEeccccCCcCCCCCCCeEEECCCcCCCCccchhhhHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCccccCCCEEEecCCCCCCHHHHHHHHHHcCCCCCCceEeeeCCCCcEEEeeEeEeeeehhccccccCccceeeecC
Q 001050 976 AALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTG 1055 (1173)
Q Consensus 976 ~~~~~~~~~g~~~~~tpF~~~~~~~~~~~l~~~g~~~~G~e~ly~g~tG~~~~~~i~~G~~yy~rL~Hmv~dK~~~R~~G 1055 (1173)
+ +.|.+.|+|||++...+++++.|+++||+++|+|.||||+||++|+++||+|++|||||+|||+||+||||+|
T Consensus 1025 ~------~~g~~~~~tpF~~~~~~~~~~~l~~~g~~~~G~~~l~~g~tg~~~~~~i~~G~~yy~kL~Hmv~dK~h~r~~g 1098 (1210)
T 3h0g_B 1025 A------LSGFEGDATPFTDVTVEAVSKLLRSHGFQSRGFEVMYHGHTGRKLVAQVFLGPTYYQRLKHLVDDKIHARARG 1098 (1210)
T ss_dssp S------SSCCCCBCCSSCSCCHHHHHHHHHTTTSCTTSCBCCBCSSSCCBCSSCBEECCEECEECSCCSTTTCEECSSC
T ss_pred H------hcCCceeeccCCCCcHHHHHHHHHHcCcCCCCCEEEEcCCCCCCccccEEEEehHhhcchhhcccCcEEeccC
Confidence 9 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCcccccccCceeeeehhhhHHHHhhhHHHHHHhhhcCCCccceecccccCCccchheeeecCCcccCCcccc
Q 001050 1056 PVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCR 1135 (1173)
Q Consensus 1056 p~~~lT~QP~~Gr~~~GG~R~GEME~d~l~a~Ga~~~l~erl~~~SD~~~~~vc~~cg~~~~~~~~~~~~~~~~~~~~c~ 1135 (1173)
||+.|||||++||+|+|||||||||||||+|||||++|||||+.+||+|+++||+.||+++ +.+...+.++|+
T Consensus 1099 p~~~~t~QP~~gr~~~GG~r~GEME~~~l~a~Gaa~~l~e~l~~~SD~~~~~vC~~cg~~~-------~~~~~~~~~~c~ 1171 (1210)
T 3h0g_B 1099 PVQILTRQPVEGRSRDGGLRFGEMERDCQISHGCSSVLRERLFDCSDAYRVIVCDICGLIA-------IASYKKDSYECR 1171 (1210)
T ss_dssp CBCSSSCSBCCSSTTCCCCCCCHHHHHHHHHHTBHHHHHHHHHTTTTCCEEEEESSSCCBC-------CCCSSSCCCCCT
T ss_pred CCchhccCCcccccccCCeeeehhhhhhhhhccHHHHHHHHhhcCCCcceeEeecCCCCee-------eecccCCceEcC
Confidence 9999999999999999999999999999999999999999999999999999999999997 445556678999
Q ss_pred ccCCCCCcccccchHhHHHHHHHHHhcCCcEEEEEe
Q 001050 1136 ICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171 (1173)
Q Consensus 1136 ~c~~~~~~~~~~iPy~~k~L~~EL~sm~i~~~l~~~ 1171 (1173)
.|+++.+|.++.||||||||+|||+||||++||.++
T Consensus 1172 ~c~~~~~i~~~~~p~~~k~l~~El~~~~i~~rl~~~ 1207 (1210)
T 3h0g_B 1172 SCQNRTRFSQVYLPYAAKLLFQELMSMNIAPRLFTK 1207 (1210)
T ss_dssp TTCCSSCEEEEECCHHHHHHHHHHHTTTCCEECCCS
T ss_pred ccCCCCccceecCCHHHHHHHHHHHhCCCceEEEec
Confidence 999999999999999999999999999999999765
No 2
>1twf_B DNA-directed RNA polymerase II 140 kDa polypeptid; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.1 PDB: 1i3q_B 1i6h_B 1k83_B* 1nik_B 1nt9_B 1pqv_B 1r5u_B 1r9s_B* 1r9t_B* 1sfo_B* 1twa_B* 1twc_B* 1i50_B* 1twg_B* 1twh_B* 1wcm_B 1y1v_B 1y1w_B 1y1y_B 1y77_B* ...
Probab=100.00 E-value=1.9e-285 Score=2706.48 Aligned_cols=1115 Identities=36% Similarity=0.589 Sum_probs=950.7
Q ss_pred cccchhhhhhhcccccCcCCchHHHHHHHHHHHHhHHHHHhcccCceEeCCCCCCCCCCCCcceeEEEEEceEEEccCcc
Q 001050 19 EEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSF 98 (1173)
Q Consensus 19 ~~~~~~~~~~~i~~~f~~~~Lv~~qi~SFN~Fi~~gL~~ii~~~~pI~~~~~~~~~~~~~~~~~~~~l~f~~i~i~~P~~ 98 (1173)
..++++|+|.++++||+.++|++|||+|||||+++||++++++++||+++.+.+++..+.....++.|+|++++|++|++
T Consensus 23 ~~~~~~d~w~li~~~~~~~~Lv~~qidSFn~Fi~~gL~~iv~~~~~I~~~~~~~~~~~~~~~~~~~~l~f~~i~l~~P~~ 102 (1224)
T 1twf_B 23 APITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTESDNISRKYEISFGKIYVTKPMV 102 (1224)
T ss_dssp CCCCTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHTHHHHHHHTTCBCC------------------CCEECCCEEEEEEE
T ss_pred CccCHHHHHHhHHHHHcCccHHHHHHHHHHHHHHHhHHHHHHhcCceeecCcccccccccccceEEEEEEEEEEEeCCce
Confidence 44699999999999999999999999999999999999999999999763221111000001235789999999999999
Q ss_pred ccCCCCCcCCCChhhHHhcCCcccceEEEEEEEEEeeccccccccccccccceeeccccc--cc--eeEEEecccceEec
Q 001050 99 FAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLS--DE--TTNIIIGRIPVMVK 174 (1173)
Q Consensus 99 ~e~~~~~~~~l~P~ecR~r~~TYsa~l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~v~lG~IPIMvk 174 (1173)
.+.+ +..++|||+|||+|++||+|||+|+|++.+.. ++..+++.....+.... .+ .++|+||+||||||
T Consensus 103 ~e~~-~~~~~l~P~EcRlR~lTYsapl~v~v~~~~~~------~~~~~g~~~~~~~~~~~~~~~~~~~~v~iG~iPIMlr 175 (1224)
T 1twf_B 103 NESD-GVTHALYPQEARLRNLTYSSGLFVDVKKRTYE------AIDVPGRELKYELIAEESEDDSESGKVFIGRLPIMLR 175 (1224)
T ss_dssp CCSS-SCCEECCHHHHHHTTCCCEEEEECCEECCCCC-------------------------------CCEEEEEECCTT
T ss_pred eccC-CccccCCHHHHhhcCCccceeEEEEEEEEEEe------CCcccccccccccccccccccccceeeEeCCCCeEec
Confidence 8877 67889999999999999999999999554311 00000000000000001 11 34699999999999
Q ss_pred CCccccCC------CcCCCCcCCCCcEEEEeCcEEEeEeeeeeccceEEE-ecC-C---ceEEEEEeecCC---ceEEEE
Q 001050 175 SDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNS-M---GWTVAYKSENKR---NRLIVR 240 (1173)
Q Consensus 175 S~~C~L~~------~~~gE~~~D~GGYFIING~ERVIi~Qe~~spnr~~i-~~~-~---~~~a~irS~~~~---~~~~i~ 240 (1173)
|++|||++ ++.||||+|+||||||||+|||||+||++|||++|+ .++ + .|.|.+||..++ .+.|+.
T Consensus 176 S~~C~L~~~s~~el~~~gEcp~D~GGYFIING~ERVIv~Qe~~s~N~i~~~~~~~~~~~~~~~~irsv~~~~~~~~~~~~ 255 (1224)
T 1twf_B 176 SKNCYLSEATESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQ 255 (1224)
T ss_dssp STTSGGGTCCHHHHHHTTCCTTCCCCSEEETTEEEEECEEEEECSSCCEEEECCTTSSEEEEEEEECCCSSSCCCCCEEE
T ss_pred cCcccCCCCCHHHHHhhccCccCCCCEEEEeCcEEEEEEeeeccCCeEEEEeccCCCcceEEEEEEEEeccCCcceeEEE
Confidence 99999999 889999999999999999999999999999999998 432 2 488999976553 234444
Q ss_pred EEecCccccccCCEEEEEEeeccccccHhhHHHHhcCCChHHHHHHhcCCCCchHHHHHHHHhhHhhhccCCcCCCHHHH
Q 001050 241 LVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNA 320 (1173)
Q Consensus 241 ~~~~~~~~~~~~~~i~v~i~~~k~~IPl~illrALG~~sD~eI~~~i~~~~~d~~~~~~l~~~l~~~~~~~~~i~t~e~a 320 (1173)
+....+.. ..++.+++++++++++||+++||||||++||+||++.|+++.+|+.+.++|..+++++ ..++|+++|
T Consensus 256 l~~~~~~~-~~~~~i~vr~~~~k~~IPi~illkALG~~sD~eI~~~i~~~~~d~~~~~~l~~~l~e~----~~~~t~~~A 330 (1224)
T 1twf_B 256 VKLYGREG-SSARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDG----FVIQDRETA 330 (1224)
T ss_dssp EEEESCSS-CSSCCEEEECTTCSSCEEHHHHHHHTTCCSHHHHHHHHCCCTTCHHHHHHHHHHHHHT----TTCCSHHHH
T ss_pred EEEecccc-CCCCEEEEEEecccccccHHHHHHHhcCCCHHHHHHHhcccCCcHHHHHHHHHHHHHh----hhcCCHHHH
Confidence 43111000 0068999999999889999999999999999999999998777889999999999987 347899999
Q ss_pred HHHHHhh-ccCC--CCCChhhHHHHHhhcccCcCCCcc----cccchHHHHHHHHHhhccCCCCCCCcccccCcEEeehh
Q 001050 321 LKYVDKL-IKGT--TFPPGESTEECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAG 393 (1173)
Q Consensus 321 l~yig~~-~~~~--~~~~~e~~~~~L~~~llpHl~~~~----~K~~~L~~Mi~kLl~~~~g~~~~DD~D~l~nkRv~l~G 393 (1173)
|+|||++ +++. +..+.+.|+++|+++||||+|... +|++||++|++||+.+..|.+.+||+|||+||||+++|
T Consensus 331 L~yIg~r~~~~g~~~~~~~~~a~~iL~~~~l~Hvg~~~~~~~~K~~~L~~mi~kLl~~~~g~~~~DD~DhlgnkRv~l~G 410 (1224)
T 1twf_B 331 LDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAG 410 (1224)
T ss_dssp HHHHHHTTSCTTSCHHHHHHHHHHHHHHTSSTTTCCSSSCHHHHHHHHHHHHHHHHHHHTTSSCCCCTTCGGGEEEECHH
T ss_pred HHHHHHhhccCCCCCccHHHHHHHHHHhhcccccCCCccccccHHHHHHHHHHHHHHHhcCCCCCCCCccccccEEehhh
Confidence 9999999 7654 345678999999999999999863 89999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcccCCcccccccccccccchhhccccccccccccccCccccccccceeecCCCChh
Q 001050 394 ELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPL 473 (1173)
Q Consensus 394 ~Ll~~lfr~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~i~~~~It~~i~~~~sTGnw~~~~~~~~q~sGvSQvldRlN~l 473 (1173)
+||+.|||+.|+++++.++++|++++.+.+.+ ++..+++++.||++|+||||||||+.++..+++++||||||||+||+
T Consensus 411 ~Ll~~lfr~~~~r~~~~i~~~l~~~~~~~~~~-~~~~~i~~~~It~~lk~~~aTGNw~~~k~~~~~~sGvSQvldr~n~l 489 (1224)
T 1twf_B 411 PLLAQLFKTLFKKLTKDIFRYMQRTVEEAHDF-NMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYS 489 (1224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCC---------CCCCTHHHHHHHHHHHHHCCCC---------CCCEEECCCSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-chhhhhcccchhhcchhheeeccccccccccccccceeEeecccchh
Confidence 99999999999999999999999987666667 78889999999999999999999999998889999999999999999
Q ss_pred hhhccccccccccccCCcccccCCCCCCCcceeeecCCCCCcccccccccceeeeeecCc-chhHHHHHHhcCceecccc
Q 001050 474 QTLVDLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-LEPIFEQLFNSGMEKLADD 552 (1173)
Q Consensus 474 s~lSh~Rrv~s~~~~~~k~t~vR~Lhps~wG~iCPveTPEG~~cGLvk~LA~~a~It~~~-~~~i~~~l~~~g~~~~~~~ 552 (1173)
|+||||||+|+|+++++|+++||+||||||||+||+|||||+|||||||||++|.||++. ++|+.++|.++||+++++.
T Consensus 490 s~LSH~RRi~~~~~r~~k~~~~R~LHpshwG~iCPiETPEG~~cGLVknLAl~a~Is~g~~~~pi~~~l~~~G~~~l~e~ 569 (1224)
T 1twf_B 490 STLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEWGMEPLEDY 569 (1224)
T ss_dssp HHHHHHTEEECCC------CCTTSCCGGGTTTBCSSCCCSGGGBTTEEEBCTTCEECCCCCCHHHHHHHHHTTCEEGGGC
T ss_pred hhhhhhhcccccccccccccccccccCccceeecCCCCCCCcccchhhhHHhhCcccCCCCHHHHHHHHHHcCCcceeec
Confidence 999999999999999999999999999999999999999999999999999999999988 9999999999999999887
Q ss_pred cCccCCCcceeeeccEEEEEecChhHHHHHHHHHHhcCCCCceEEEEEeccCCeEEEeecCCeeeeeEEEeecc------
Q 001050 553 ASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGRILRPLLVVENM------ 626 (1173)
Q Consensus 553 ~~~~~~~~~~VflnG~~iG~~~~~~~~~~~lR~~rr~~~i~~~~~i~~~~~~~~i~I~sd~GRl~RP~l~v~~~------ 626 (1173)
.+...+..++|||||+|+|++++|..+++.||.+||.|.|+.++||++|...++++||||+||++|||++|+|+
T Consensus 570 ~~~~~~~~~kVfvnG~~vG~~~~p~~lv~~lr~lRR~g~i~~evsiv~d~r~~ei~I~TD~GRv~RPl~vV~~~~~~~~~ 649 (1224)
T 1twf_B 570 VPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHK 649 (1224)
T ss_dssp CGGGCTTCEEEEETTEEEEEESCHHHHHHHHHHHHHHTSSCTTCEEEEETTTTEEEEECCSCCEEEEEEEEECCCTTSSC
T ss_pred ccccCCCceEEEECCEEEEEeCCHHHHHHHHHHHHhccCCCCeEEEEEecccCeEEEeccCceeeeeEEEecCCCccccc
Confidence 76666788999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred c------cccccc-------------CCcchhHhhhhcCceeeecccccceeEEeecccccccccCC-------------
Q 001050 627 G------KIKSLE-------------GKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIED------------- 674 (1173)
Q Consensus 627 ~------~~~~~~-------------~~~~~~~~l~~~g~iE~id~~Eq~~~~Ia~~~~~~~~~~~~------------- 674 (1173)
+ ++..+. ...++|++|++.|.|||||++||++++||++++++.+....
T Consensus 650 ~l~l~k~hi~~L~~~~~~~~~~~~~~~~~~~w~~Lv~~G~iEyldaeEEe~~~Ia~~~~dl~~~~~~~~~~~~~~~~~R~ 729 (1224)
T 1twf_B 650 ELKVRKGHIAKLMATEYQDIEGGFEDVEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEENDLDVDPAKRI 729 (1224)
T ss_dssp EESCCHHHHHHHHHHHHCC---------CCCHHHHHHTTSEEEEEHHHHTTCCEESSGGGGCC---------CCCTTSCC
T ss_pred cceecHHHHHHhhhccccccccccccccccchhHhccCCcEEEcChhhhcCcEEeccccccCcccccccccccccccccc
Confidence 2 111111 12379999999999999999999999999999999752100
Q ss_pred ---CCCceeeeecccccccccceeecccccCCCccchhhhhhcccccccccccccCCeeeeeccccccccCCcceEeccc
Q 001050 675 ---KKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMI 751 (1173)
Q Consensus 675 ---~~~~~~th~Ei~p~~ilgv~aslIPF~~hNqspRn~yqc~~M~KQaig~~~~n~~~r~D~~~~~l~ypQ~Plv~t~~ 751 (1173)
..+..+|||||||++|||++||+|||+||||||||||||| |+|||||++.+|+..|+||+.|+|+|||+|||+|+.
T Consensus 730 ~~~~~~~~~Th~EI~Ps~ILgV~ASlIPF~dHNqSpRn~yqs~-M~kQA~g~~~~n~~~r~dt~~~~l~ypQkPlV~t~~ 808 (1224)
T 1twf_B 730 RVSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSA-MGKQAMGVFLTNYNVRMDTMANILYYPQKPLGTTRA 808 (1224)
T ss_dssp CCCCCCSCCCEECSCGGGGSCTTGGGSSSGGGSCHHHHHHHHH-HGGGBCBCSCTTTTTCCCSEEEEESSCBCCSEECTT
T ss_pred cCCcCchhhcccccCCccccceeecccCCccccccchhhhccc-ccccccccccceeeeecccccceeecCcCCeEEccc
Confidence 0123789999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred cccccCCcccCCCCCCCCCccCCcccEEEEEecCCCCCCCeEEEecceeecCceEEEEEEEEEEEeeecccccccccccc
Q 001050 752 SDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDD 831 (1173)
Q Consensus 752 ~~~~~~~~~~~~~~~~~~~~~~G~N~~VAv~~~~Gyn~EDaiiin~~~~~rg~f~s~~~~~~~~~~~~~~~~~~~e~~~~ 831 (1173)
++.+ +++|+|+|+||+||||||+||||||||||||+|++||+|||+||++|++++++.+. +..|.|+.
T Consensus 809 ~~~~-----------~~~elp~G~N~iVAvm~y~GYN~EDAiIin~~sv~rg~~~s~~~~~y~~~~~~~~~-~~~e~~~~ 876 (1224)
T 1twf_B 809 MEYL-----------KFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGM-SITETFEK 876 (1224)
T ss_dssp HHHH-----------TTTTSCCCEEEEEEECBSSSTTTTTEEEEEHHHHHTTTTCEEEEEEEEECCCCSCT-TCCCEESC
T ss_pred cccc-----------ccccCCCCeeEEEEEecccCcccchhhhhhhhHHhcCCeeEEEEEEEEEEeeeCCC-CceeEecC
Confidence 9999 89999999999999999999999999999999999999999999999999877432 23456887
Q ss_pred ccccccccccccccCCCCCCCCcccCcEEccCCeEEEEecCC---------------CceeeEEccCCCceEEEEEEEEe
Q 001050 832 MVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADS---------------GADHSIKLKHTERGMVQKVVLSS 896 (1173)
Q Consensus 832 ~~~~~~~~~~~~~~~~Ld~dGi~~~g~~v~~gdili~k~~~~---------------~~~~s~~~~~~~~g~v~~v~~~~ 896 (1173)
|........+...|++||+||||+||++|++|||||||++|+ .+|+|+++++++.|+||+|++++
T Consensus 877 P~~~~~~~~~~~~~~~LD~dGiv~~G~~V~~gDilvgK~~p~~~~~~~~~~~~~~~~~rd~s~~~~~~e~g~Vd~V~~~~ 956 (1224)
T 1twf_B 877 PQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTT 956 (1224)
T ss_dssp CCCSSSCBCCSSCGGGCCTTSBCCTTCEECTTCEEECEECCCC-------------CCBBCCEECCTTCCEEEEEEEEEE
T ss_pred CChhhccCccHHHHhhcccCCccCCccEecCCCEEEEEecCCCccccccccccccCccceeEEEeeCCCCeEEEEEEEEe
Confidence 765332233455699999999999999999999999999984 57999999999999999999999
Q ss_pred CCCCCeEEEEEEeeccCCCccccccccCCCceEEeeeecCCCcCCCCCCCcCcEEeCCCCCCCCCChHHHHHHHHHHHHH
Q 001050 897 NDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIA 976 (1173)
Q Consensus 897 ~~~~~~~~~v~~r~~R~~~iGDK~ssRhGqKGvvs~i~~~~dmPf~~~G~~pDiI~NPh~~PSRMtiGql~E~~~gk~~~ 976 (1173)
+.+|.+.|||++|++|+|+||||||||||||||||+|||+|||||++||++|||||||||||||||||||+||++||||+
T Consensus 957 ~~~g~~~vkV~ir~~R~p~iGDKfasRHGqKGvis~i~p~eDMPf~~dG~~pDiIiNPhg~PSRMtiGqllE~~lgka~~ 1036 (1224)
T 1twf_B 957 NQDGLKFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAA 1036 (1224)
T ss_dssp CSSSCEEEEEEEEEEECCCTTCEEECTTSCEEEEEEEECTTTSCEETTSCCCSEEECGGGSTTTTCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEEEEEecCCCCchhhhhhhccCcceeeeecccccCCcCCCCCCccEEeCCCcCccccccchhHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCccccCCCEEEecCCCCCCHHHHHHHHHHcCCCCCCceEeeeCCCCcEEEeeEeEeeeehhccccccCccceeeecCC
Q 001050 977 ALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGP 1056 (1173)
Q Consensus 977 ~~~~~~~~g~~~~~tpF~~~~~~~~~~~l~~~g~~~~G~e~ly~g~tG~~~~~~i~~G~~yy~rL~Hmv~dK~~~R~~Gp 1056 (1173)
+.|.+.|+|||++.+++++++.|+++||+++|+|.||||+||++|+++||+|++|||||+|||+||+||||+||
T Consensus 1037 ------~~G~~~datpF~~~~~~~i~~~L~~~g~~~~G~e~ly~G~TG~~~~~~i~vG~~YyqkL~HmV~DKihaRs~GP 1110 (1224)
T 1twf_B 1037 ------LSGNEGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGP 1110 (1224)
T ss_dssp ------HHCSCEECCSSSSCCHHHHHHHHHTTTSCTTSEECEECTTTCCBCSSCEEEEEEEEEEBSSCGGGTCEEECCCC
T ss_pred ------hcCceeecCCCCCccHHHHHHHHHHcCCCCCCCEEeecCCCCCCccceEEEehhHhhcchhhcccCceEEeeCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCcccccccCceeeeehhhhHHHHhhhHHHHHHhhhcCCCccceecccccCCccchheeeecCCcccCCccccc
Q 001050 1057 VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRI 1136 (1173)
Q Consensus 1057 ~~~lT~QP~~Gr~~~GG~R~GEME~d~l~a~Ga~~~l~erl~~~SD~~~~~vc~~cg~~~~~~~~~~~~~~~~~~~~c~~ 1136 (1173)
|++|||||++||||+|||||||||||||+|||||++|||||+.+||.++++||+.||++.. +.+..++.++|+.
T Consensus 1111 ~~~lT~QP~~Gr~r~GG~RfGEMErd~L~a~Gaa~~L~ErL~~~SD~~~~~vC~~cG~~~~------~~~~~~~~~~c~~ 1184 (1224)
T 1twf_B 1111 MQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERLMEASDAFRVHICGICGLMTV------IAKLNHNQFECKG 1184 (1224)
T ss_dssp ----------------CCCCCHHHHHHHHHHTCHHHHHHHHCCSSCCCEEEEESSSCSSCC------EEETTTTEEEBTT
T ss_pred CcccccCCCcccccCCceecchhhhhhHHhccHHHHHHHHHhcCCccceeEeeccCCCeee------ecccccCceECCc
Confidence 9999999999999999999999999999999999999999999999999999999999942 3333445678999
Q ss_pred cCCCCCcccccchHhHHHHHHHHHhcCCcEEEEEe
Q 001050 1137 CDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171 (1173)
Q Consensus 1137 c~~~~~~~~~~iPy~~k~L~~EL~sm~i~~~l~~~ 1171 (1173)
|+++.++.++.||||||||+|||+||||+++|.++
T Consensus 1185 c~~~~~i~~~~iPysfklL~~EL~sm~i~~~l~~~ 1219 (1224)
T 1twf_B 1185 CDNKIDIYQIHIPYAAKLLFQELMAMNITPRLYTD 1219 (1224)
T ss_dssp TTBSSSEEEEECCHHHHHHHHHHHHTTBCCEEESC
T ss_pred CCCCCccccccCCHhHHHHHHHHHHCCCeeEEEec
Confidence 99888999999999999999999999999999875
No 3
>4ayb_B DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_B 2y0s_B 2waq_B 4b1o_B 4b1p_R 2pmz_B 3hkz_B
Probab=100.00 E-value=3.4e-264 Score=2528.50 Aligned_cols=1069 Identities=33% Similarity=0.536 Sum_probs=968.9
Q ss_pred ccCCcccchhhhhhhcccccCcCCchHHHHHHHHHHHHhHHHHHhcccCceEeCCCCCCCCCCCCcceeEEEEEceEEEc
Q 001050 15 CDLGEEFLKTFCRKAAVSFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLD 94 (1173)
Q Consensus 15 ~~~~~~~~~~~~~~~i~~~f~~~~Lv~~qi~SFN~Fi~~gL~~ii~~~~pI~~~~~~~~~~~~~~~~~~~~l~f~~i~i~ 94 (1173)
++.+.+++.+|+|.+|++||+.+|||+|||||||||+++||++++++++||+... ..+.|+|++++|+
T Consensus 2 ~~~~~~~~~~d~w~~i~~~f~~~gLV~~qidSfn~Fl~~gL~~i~~~~~pI~~~~------------~~~~l~f~~~~l~ 69 (1131)
T 4ayb_B 2 NELSSNLSIDERWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEIPTEI------------PGLKVRLGKIRIG 69 (1131)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHTTTHHHHHHHCSCCCSS------------TTCEEEEEEEEEC
T ss_pred CcccccCChhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCHHHHHHhcCCeeecC------------CCEEEEEEEEEEe
Confidence 5678899999999999999999999999999999999999999999999996421 2478999999999
Q ss_pred cCccccCCCCCcCCCChhhHHhcCCcccceEEEEEEEEEeeccccccccccccccceeeccccccceeEEEecccceEec
Q 001050 95 KPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVK 174 (1173)
Q Consensus 95 ~P~~~e~~~~~~~~l~P~ecR~r~~TYsa~l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lG~IPIMvk 174 (1173)
+|++.+.+ +..+++||+|||+|++||+|||+|++.+..++ ...++++|++|+|||||+
T Consensus 70 ~P~~~e~d-~~~~~l~P~EcR~r~~TYsapl~v~v~~~~~~---------------------~~~~~~~v~lG~iPiM~~ 127 (1131)
T 4ayb_B 70 KPRVRESD-RGEREISPMEARLRNLTYAAPLWLTMIPVENN---------------------IEAEPEEVYIGDLPIMLK 127 (1131)
T ss_dssp CSEEEETT-TEEEECCHHHHHHHTCCCEEEEEEEEEEEETT---------------------EECCCEEEEEEEEECCTT
T ss_pred CCeeecCC-CCcCccCHHHHHhcCCCccceEEEEEEEEECC---------------------cEEEEEEEEEEECCEEeC
Confidence 99999877 67789999999999999999999999886532 012357899999999999
Q ss_pred CCccccCC------CcCCCCcCCCCcEEEEeCcEEEeEeeeeeccceEEE-ecC-C---ceEEEEEeecCCceEEEEEEe
Q 001050 175 SDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWV-SNS-M---GWTVAYKSENKRNRLIVRLVD 243 (1173)
Q Consensus 175 S~~C~L~~------~~~gE~~~D~GGYFIING~ERVIi~Qe~~spnr~~i-~~~-~---~~~a~irS~~~~~~~~i~~~~ 243 (1173)
|++|||++ ++.||||+||||||||||+|||||+||++|||++|+ ..+ + .|.|.++|.+....+.+.+
T Consensus 128 S~~C~L~~~s~~el~~~gEc~~D~GGyFIING~ERVIv~Q~~~spn~~~~~~~~~~~~~~~~a~ii~~~~~~~~~~~i-- 205 (1131)
T 4ayb_B 128 SAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERVIVTQEDLAPNRVLVDTGKTGSNITHTAKIISSTAGYRVPVTI-- 205 (1131)
T ss_dssp STTSGGGGCCHHHHHHHTCCTTCCCCCEEETTEEEEECEEEEECCSSCEEEECCTTCSEEEEEECEEECSSCEEECCE--
T ss_pred CCcccCCCCCHHHHHhcCCCcCCCCcEEEeCCEEEEEEEeeccCCCeEEEEeccCCCcEEEEEEEEECCCCceeeEEE--
Confidence 99999999 889999999999999999999999999999999998 322 2 5788888776643343433
Q ss_pred cCccccccCCEEEEEEeeccccccHhhHHHHhcCCChHHHHHHhcCCCCchHHHHHHHHhhHhhhccCCcCCCHHHHHHH
Q 001050 244 MSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKY 323 (1173)
Q Consensus 244 ~~~~~~~~~~~i~v~i~~~k~~IPl~illrALG~~sD~eI~~~i~~~~~d~~~~~~l~~~l~~~~~~~~~i~t~e~al~y 323 (1173)
++.+++.+++++++.+++||+++||||||+.||+||++.+.. +.++.+.+..+++++ ..+.|+++||.|
T Consensus 206 ----~~~~~~~~~v~~~~~~~~iPi~illrALG~~sD~eI~~~i~~---~~~~~~~l~~~~~~~----~~i~~~~~al~~ 274 (1131)
T 4ayb_B 206 ----ERLKDGTFHVSFPAVPGKIPFVILMRALGILTDRDIVYAVSL---DPEIQNELFPSLEQA----SSIANVDDALDF 274 (1131)
T ss_dssp ----EEETTTCCEECCSSSCCCEEHHHHHHHHTCCSHHHHHHHHCS---CHHHHTTTHHHHHHH----TTTCCSSHHHHH
T ss_pred ----EEeCCCEEEEEEcCcCceeeHHHHHHHhCCcchhhHHHHhcc---cHHHHHHHHHHHHHh----cccccHHHHHHH
Confidence 244678999999998889999999999999999999999975 455666666777776 458899999999
Q ss_pred HHhhccCCCC--CChhhHHHHHhhcccCcCCCcc----cccchHHHHHHHHHhhccCCCCCCCcccccCcEEeehhhhHH
Q 001050 324 VDKLIKGTTF--PPGESTEECMNTYLFPSLHGTK----QKARFLGYMVKCLLQAYSGRRKCDNRDDFRNKRLELAGELLE 397 (1173)
Q Consensus 324 ig~~~~~~~~--~~~e~~~~~L~~~llpHl~~~~----~K~~~L~~Mi~kLl~~~~g~~~~DD~D~l~nkRv~l~G~Ll~ 397 (1173)
|+++++.... ...+.|+++|++++|||++... .|+.+|++|++||+.+..|.+.+||+|||+||||+++|+||+
T Consensus 275 i~~r~~~~~~~~~~~~~a~~il~~~~l~hl~~~~~~~~~K~~~L~~mi~~Ll~l~~g~~~~DD~Dhl~NkRvr~vGeLl~ 354 (1131)
T 4ayb_B 275 IGSRVAIGQKRENRIEKAQQIIDKYFLPHLGTSADDRRKKAYYLAYAISKVIELYLGRREPDDKDHYANKRLRLAGDLFA 354 (1131)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHTTSSTTSCSSTTSHHHHHHHHHHHHHHHHHHHHTSSCCCCTTSGGGEEEECHHHHHH
T ss_pred HhhhhhcCCCCchhHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHcCCCCCCCCcchhcceecchhHHHH
Confidence 9999875433 3468899999999999998765 699999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccCCcccccccccccccchhhccccccccccccccCccccccccceeecCCCChhhhhc
Q 001050 398 RELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLV 477 (1173)
Q Consensus 398 ~lfr~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~i~~~~It~~i~~~~sTGnw~~~~~~~~q~sGvSQvldRlN~ls~lS 477 (1173)
+|||.+|+++++.+++++.+...+.+.+ ++..+++++.||++|++|||||||.. +++||||+|||+||||+||
T Consensus 355 ~~fr~~l~r~~r~ir~~~~~~~~~~~~~-~~~~li~~~~it~~i~~~~aTGn~~~------~~sglSQ~mdq~NpLs~ls 427 (1131)
T 4ayb_B 355 SLFRVAFKAFVKDLTYQLEKSKVRGRKL-ALKALVRPDIVTERIRHALATGNWVG------GRTGVSQLLDRTNWLSMLS 427 (1131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCSCC-CHHHHCCTHHHHHHHHHHHHTTBCSS------SCBCCEEECCCSSHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhcccchhccccc-chhhhcCCchhhhhhHHHHhhccccc------CCCceEEEeccCCHHHHHH
Confidence 9999999999999999998875555556 67888999999999999999999975 5899999999999999999
Q ss_pred cccccccccccCCcccccCCCCCCCcceeeecCCCCCcccccccccceeeeeecCc-chhHHHHHHhcCceeccccc---
Q 001050 478 DLRRTRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSI-LEPIFEQLFNSGMEKLADDA--- 553 (1173)
Q Consensus 478 h~Rrv~s~~~~~~k~t~vR~Lhps~wG~iCPveTPEG~~cGLvk~LA~~a~It~~~-~~~i~~~l~~~g~~~~~~~~--- 553 (1173)
||||||+++++++|+++||+|||||||||||||||||+|||||+|||++|+|+.++ +.++.+++.++|+.++++..
T Consensus 428 H~RRlsagl~rera~~evRdlHpShyGriCPIETPEG~niGLI~sLA~~a~I~~g~~e~~i~~~l~~~g~~~~e~~~~~~ 507 (1131)
T 4ayb_B 428 HLRRVISSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALMAQIAVGINEKIVEKTLYEMGVVPVEEVIRRV 507 (1131)
T ss_dssp HHTEEEECSCSSSCCHHHHSCCGGGTTTBCSSCCCSSTTBTTEEEBBSSCEECCCCCHHHHHHHHHHTTCEEHHHHHHTT
T ss_pred hhhhhcCCcccccccccccccCHhhccccccccCCCCccccccccceeeEEEecCCCCcceeeehhhcCceeeeeeehhh
Confidence 99999999999999999999999999999999999999999999999999999988 99999999999998865321
Q ss_pred -Cc-----cCCCcceeeeccEEEEEecChhHHHHHHHHHHhcCCCCceEEEEEecc--CCeEEEeecCCeeeeeEEEeec
Q 001050 554 -SY-----SLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDEL--QSEVRIFMDAGRILRPLLVVEN 625 (1173)
Q Consensus 554 -~~-----~~~~~~~VflnG~~iG~~~~~~~~~~~lR~~rr~~~i~~~~~i~~~~~--~~~i~I~sd~GRl~RP~l~v~~ 625 (1173)
.. ......+||+||+|+|++.++..++..+|..|+.+.++..++|.+... .+++++++|+||++|||+++++
T Consensus 508 ~~~~~~~~~~~~~~~v~lng~~vg~~~~~~~~~~~~~~~~~~~~i~~~vsi~~~~~~~~~~~~i~~d~~r~~rpv~~~~~ 587 (1131)
T 4ayb_B 508 TEGGEDQNEYLKWSKVILNGRLVGYYRDGEELAKKIRERRRKGEISDEVNVGHIVTDFINEVHVNCDSGRVRRPLIIVSN 587 (1131)
T ss_dssp TTC-----CCCCCCEEEETTEEEEECSCHHHHHHHHHHHHHHTSSCTTCEEEEECTTTCCEEEEECCTTCEEEEEEEBSS
T ss_pred cccccccchhhhhcceeecCceEEEeccchhhhhhhhhhhccCccCceEEEeeccccccceeeeecCCcccccceEEeec
Confidence 11 112346899999999999999999999999999999999999988654 3689999999999999999988
Q ss_pred ccc------cccccCCcchhHhhhhcCceeeecccccceeEEeecccccccccCCCCCceeeeecccccccccceeeccc
Q 001050 626 MGK------IKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIP 699 (1173)
Q Consensus 626 ~~~------~~~~~~~~~~~~~l~~~g~iE~id~~Eq~~~~Ia~~~~~~~~~~~~~~~~~~th~Ei~p~~ilgv~aslIP 699 (1173)
++. +.....+...|.+++..|.|||+|++|++++.||+.++++ ...+||+|++|+.++|++|++||
T Consensus 588 ~~p~v~~~~~~~~~~g~~~~~~~~~~g~veyvd~~e~~~~~ia~~~~~~--------~~~~th~ei~p~~il~v~a~lip 659 (1131)
T 4ayb_B 588 GNPLVTREDIEKLDSGSITFDDLVRQGKIEYLDAEEEENAYVALEPSDL--------TPEHTHLEIWSPAILGITASIIP 659 (1131)
T ss_dssp SSBSCCHHHHHHHHTTTCCHHHHHHTTSEEEEEHHHHTTCCEESSGGGC--------CTTCSEECSCGGGGSBTTGGGCS
T ss_pred ccccccHHHHHHHhcCChhHHHHhhCCceeeeeccccceeEEEeecccc--------cccccceeeccccccccccceec
Confidence 762 2234556778999999999999999999999999999887 45689999999999999999999
Q ss_pred ccCCCccchhhhhhcccccccccccccCCeeeeeccccccccCCcceEeccccccccCCcccCCCCCCCCCccCCcccEE
Q 001050 700 FANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAIV 779 (1173)
Q Consensus 700 F~~hNqspRn~yqc~~M~KQaig~~~~n~~~r~D~~~~~l~ypQ~Plv~t~~~~~~~~~~~~~~~~~~~~~~~~G~N~~V 779 (1173)
|++|||||||+|||| |+|||||++.+|+..|.|+++|+|+|||+|||+|+.++.+ +++++|+|+|++|
T Consensus 660 f~~~NqspRn~yq~~-m~KQa~G~~~~~~~~r~D~~~~~l~ypQ~PlV~t~~~~~~-----------~~~e~p~G~N~lV 727 (1131)
T 4ayb_B 660 YPEHNQSPRNTYQSA-MAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQTRALDII-----------GYTNRPAGNNAIL 727 (1131)
T ss_dssp SGGGSCHHHHHHHHH-HGGGBCSCCCGGGGTCCCSEEEEESSCCCCSSBCHHHHHH-----------TCTTSCCSEEEEE
T ss_pred ccccCccchheeccc-cccccCCceeecceeeeccccceeecCCccccccchhhhh-----------ccCCCCCceeEEE
Confidence 999999999999999 9999999999999999999999999999999999999999 8999999999999
Q ss_pred EEEecCCCCCCCeEEEecceeecCceEEEEEEEEEEEeeeccccccccccccccccccccccccccCCCCCCCCcccCcE
Q 001050 780 AVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGAN 859 (1173)
Q Consensus 780 Av~~~~Gyn~EDaiiin~~~~~rg~f~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~Ld~dGi~~~g~~ 859 (1173)
|||||+||||||||||||++++||+|||+||++|+++++++.. +..|+|..|.+..........+++||+||||++|++
T Consensus 728 A~m~w~GYN~EDAIIine~~v~rg~ftSihi~~y~~e~r~~~~-g~~e~it~~~p~v~~~~~~~~~~~LDe~Gii~iGa~ 806 (1131)
T 4ayb_B 728 AVISFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEVKYPG-GQEDKIVMPEPGVRGYKGKEYYRLLEDNGVVSPEVE 806 (1131)
T ss_dssp EECCCSSCCCTTCEEEEHHHHTTTTTCEEEEEEEEEECCCCTT-SCCCCCCCCCSSCSSCCCGGGGTTCCTTSBCCTTCE
T ss_pred EEEccCCccHHHhhhhhcchhhcccceeeEEEEEEEEEEecCC-CCceEEecCCccccccchHHHhhcCCccccccCCcE
Confidence 9999999999999999999999999999999999999988653 334557665554333223445899999999999999
Q ss_pred EccCCeEEEEecCC--------------CceeeEEccCCCceEEEEEEEEeCCCCCeEEEEEEeeccCCCccccccccCC
Q 001050 860 LQSGDIVIGKYADS--------------GADHSIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHG 925 (1173)
Q Consensus 860 v~~gdili~k~~~~--------------~~~~s~~~~~~~~g~v~~v~~~~~~~~~~~~~v~~r~~R~~~iGDK~ssRhG 925 (1173)
|++|||||||++|+ .+|+|+++++++.|+||+|.++.+.+|.+.|||++|+.|+|+||||||||||
T Consensus 807 V~~gDilvGKvtP~~~~~~~~~~~~~~~~~d~sl~~~~g~~g~Vd~v~~~~~~~~~~~vkV~i~~~R~~~vGDK~agRHG 886 (1131)
T 4ayb_B 807 VKGGDVLIGKVSPPRFLQEFKELSPEQAKRDTSIVTRHGEMGIVDLVLITETAEGNKLVKVRVRDLRIPSIGDKFASRHG 886 (1131)
T ss_dssp ECTTCEEECCCCCCC-----------CCCCCCCEECCTTCCEEEEEEEEEECSSSCEEEEEEEEEEECCCTTCEEEETTS
T ss_pred ecCCCEEEEEecCCcchhhhhhcCcceeeeeeeEEccCCCceEEEEEEEeeccCCceEEEEEEeccccCccccccccccc
Confidence 99999999999985 4799999999999999999999999999999999999999999999999999
Q ss_pred CceEEeeeecCCCcCCCCCCCcCcEEeCCCCCCCCCChHHHHHHHHHHHHHhcCccccCCCEEEecCCCCCCHHHHHHHH
Q 001050 926 QKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATPFATPSVDAITEQL 1005 (1173)
Q Consensus 926 qKGvvs~i~~~~dmPf~~~G~~pDiI~NPh~~PSRMtiGql~E~~~gk~~~~~~~~~~~g~~~~~tpF~~~~~~~~~~~l 1005 (1173)
||||||+|||+|||||++||++|||||||||||||||||||+|+++||||+ +.|.+.|+|||.+.+.+++.+.|
T Consensus 887 nKGvvs~i~p~eDMPf~~dG~~~DiilNP~gvPSRMniGqilE~~~gk~~~------~~g~~~~atpf~~~~~e~~~~~l 960 (1131)
T 4ayb_B 887 QKGVIGMLIPQVDMPYTVKGVVPDVILNPHALPSRMTLGQIMEGIAGKYAA------LSGNIVDATPFYKTPIEQLQNEI 960 (1131)
T ss_dssp CEEEEEEEECTTTSEEETTSCCCSEECCTTSSTTTTCHHHHHHHHHHHHHH------HHCCCCBCCTTSSCCTHHHHHHH
T ss_pred ccceeeeecccccCCcCCCCCCccEEECCCCCcccCcHHHHHHHHHHHHHH------hCCCceecCccCCCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHcCCCCCCceEeeeCCCCcEEEeeEeEeeeehhccccccCccceeeecCCCCccccCCcccccccCceeeeehhhhHHH
Q 001050 1006 HRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLI 1085 (1173)
Q Consensus 1006 ~~~g~~~~G~e~ly~g~tG~~~~~~i~~G~~yy~rL~Hmv~dK~~~R~~Gp~~~lT~QP~~Gr~~~GG~R~GEME~d~l~ 1085 (1173)
.++||+++|++.||||+||++|+++||||++|||||+|||+||+||||||||++|||||++||||+|||||||||||||+
T Consensus 961 ~~~g~~~~g~~~lydG~TGe~~~~~i~vG~~Yy~kL~HmV~DKihaRs~GP~s~~TqQPl~Gra~~GG~RfGEME~~aL~ 1040 (1131)
T 4ayb_B 961 LKYGYLPDATEVTYDGRTGQKIKSRIYFGVVYYQKLHHMVADKIHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLI 1040 (1131)
T ss_dssp HHTTSCTTSEECEEETTTCCBCSSCEEEEEEEEEEBSCCHHHHCEEESSCCBCTTTCCBCSSGGGTCCCEECHHHHHHHH
T ss_pred HHcCCCCCCCEEEeCCCCCCEecCcEEEEhhhhhccchhhccCCEeeccCCCCCcccCCCCCcccCCCcceeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhHHHHHHhhhcCCCccceecccccCCccchheeeecCCcccCCccccccCCCCCcccccchHhHHHHHHHHHhcCCc
Q 001050 1086 AHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGIT 1165 (1173)
Q Consensus 1086 a~Ga~~~l~erl~~~SD~~~~~vc~~cg~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~iPy~~k~L~~EL~sm~i~ 1165 (1173)
|||||++||||||.|||.++++||+.||+++. .+...+.++|+.|+++.++.++.||||||||+|||+||||+
T Consensus 1041 a~Gaa~~LqE~L~~~SD~~~~~vc~~cG~~~~-------~~~~~~~~~c~~~~~~~~i~~~~iP~sfk~L~~EL~sm~i~ 1113 (1131)
T 4ayb_B 1041 GFGTAMLLKDRLLDNSDRTTIYVCDQCGYIGW-------YDKNKNKYVCPIHGDKSNLFPVTVSYAFKLLIQELMSMIIS 1113 (1131)
T ss_dssp HHTCHHHHHHHTTTTTCEEEEEECSSSCCBCE-------EETTTTEEECSSCSSSSCCEEEEEEHHHHHHHHHHHTTTCE
T ss_pred HHhHHHHHHHHhhccCCccceeeccCCCceEE-------EeccCCceeCCccCCCCCccccCCCHHHHHHHHHHHHCCcc
Confidence 99999999999999999999999999999973 33344567899999999999999999999999999999999
Q ss_pred EEEEEe
Q 001050 1166 LKFDTE 1171 (1173)
Q Consensus 1166 ~~l~~~ 1171 (1173)
++|.++
T Consensus 1114 ~~l~~~ 1119 (1131)
T 4ayb_B 1114 PRLILE 1119 (1131)
T ss_dssp EEEEEE
T ss_pred eEEEec
Confidence 999875
No 4
>2a6h_C DNA-directed RNA polymerase beta chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.1 PDB: 1smy_C* 1zyr_C* 1iw7_C* 2a69_C* 2a6e_C 2a68_C* 2be5_C* 2cw0_C 2o5i_C 2o5j_C* 2ppb_C* 3aoh_C* 3aoi_C* 3dxj_C* 3eql_C* 1ynj_C* 1ynn_C* 2gho_C 1hqm_C 1l9u_C ...
Probab=100.00 E-value=2.2e-226 Score=2115.06 Aligned_cols=929 Identities=25% Similarity=0.355 Sum_probs=788.1
Q ss_pred hhhhhcccccCcCCchHHHHHHHHHHH----------HhHHHHHhcccCceEeCCCCCCCCCCCCcceeEEEEEceEEEc
Q 001050 25 FCRKAAVSFFNEYGLVSHQINSYNEFI----------KNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLD 94 (1173)
Q Consensus 25 ~~~~~i~~~f~~~~Lv~~qi~SFN~Fi----------~~gL~~ii~~~~pI~~~~~~~~~~~~~~~~~~~~l~f~~i~i~ 94 (1173)
..|..++++|+.++|+++|++|||||+ ++||++++++++||+..... ...+.|+|.+++|+
T Consensus 4 ~~~~~~~~~~~~p~Lv~~QidSFn~Fl~~~~~~~~~~~~GL~~i~~~~~pI~~~~~~---------~~~~~l~f~~~~l~ 74 (1119)
T 2a6h_C 4 KRFGRIREVIPLPPLTEIQVESYRRALQADVPPEKRENVGIQAAFRETFPIEEEDKG---------KGGLVLDFLEYRLG 74 (1119)
T ss_dssp EECCCCCCCSCCCCTTHHHHHHHHHHSCTTSCTTSSCCCHHHHHHHHHCSEEECCSS---------SCCEEEEECCCCBC
T ss_pred eecccccccccCcCHHHHHHHHHHHHHccCCccccchhhhHHHHHHhcCCEeccCCC---------CCeEEEEEEEEEEc
Confidence 358999999999999999999999999 99999999999999862111 13588999999999
Q ss_pred cCccccCCCCCcCCCChhhHHhcCCcccceEEEEEEEEEeeccccccccccccccceeeccccccceeEEEecccceEec
Q 001050 95 KPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVK 174 (1173)
Q Consensus 95 ~P~~~e~~~~~~~~l~P~ecR~r~~TYsa~l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lG~IPIMvk 174 (1173)
+|++ +|+|||+|++||+|||+|++++...+ +++ .++++|++|+||||+.
T Consensus 75 ~P~~-----------~p~Ecr~r~lTYsapL~V~v~l~~~~----------~~~----------ik~~~V~iG~iPiMt~ 123 (1119)
T 2a6h_C 75 EPPF-----------PQDECREKDLTYQAPLYARLQLIHKD----------TGL----------IKEDEVFLGHIPLMTE 123 (1119)
T ss_dssp CCSS-----------CHHHHHHTTCCCEEEBCCCEEECCSS----------SCC----------EECCCCCCCEEECCCT
T ss_pred CCCC-----------CHHHHHhcCCcccceEEEEEEEEECC----------Cce----------eeeeEEEecCCCeECC
Confidence 9975 69999999999999999999986522 011 1235799999999986
Q ss_pred CCccccCCCcCCCCcCCCCcEEEEeCcEEEeEeeeeeccceEEEec---CC--ceEEEEEeecCCceEEEEEEecCcccc
Q 001050 175 SDLCWMKGVEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSN---SM--GWTVAYKSENKRNRLIVRLVDMSKFED 249 (1173)
Q Consensus 175 S~~C~L~~~~~gE~~~D~GGYFIING~ERVIi~Qe~~spnr~~i~~---~~--~~~a~irS~~~~~~~~i~~~~~~~~~~ 249 (1173)
||||||||+|||||+|+++|||+++... ++ .|+|.+++. ++.|+.+..
T Consensus 124 ------------------gGyFIING~ERVIVsQ~~rspgv~~~~~~~~~g~~~ysa~ii~~---rgs~l~~~~------ 176 (1119)
T 2a6h_C 124 ------------------DGSFIINGADRVIVSQIHRSPGVYFTPDPARPGRYIASIIPLPK---RGPWIDLEV------ 176 (1119)
T ss_dssp ------------------TSCCCSSSSCEEECEEEEECSCEEEECCSSCSSCCEEEECCCSS---SSCCEEEEE------
T ss_pred ------------------CcEEEEeCeEEEEEEEEecCCcEEEEeeccCCCceEEEEEEEec---cCceEEEEE------
Confidence 9999999999999999999999988832 22 577777654 345777752
Q ss_pred ccCCEEEEEEeeccccccHhhHHHHhcCCChHHHHHHhcCCCCchHHHHHHHHhhHhhhccCCcCCCHHHHHHHHHhhcc
Q 001050 250 IKGGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGRNALKYVDKLIK 329 (1173)
Q Consensus 250 ~~~~~i~v~i~~~k~~IPl~illrALG~~sD~eI~~~i~~~~~d~~~~~~l~~~l~~~~~~~~~i~t~e~al~yig~~~~ 329 (1173)
++++.+|+++++ .+||+++||||||+ ||+||++.++.+ +.+.+.| ++.. ..+.|+++||.||+++++
T Consensus 177 d~~~~i~vri~r--~kIPi~ilLrALG~-sD~eIl~~~~~~---~~~~~tl----~~d~---~~~~~~~eAl~~i~~~lr 243 (1119)
T 2a6h_C 177 EPNGVVSMKVNK--RKFPLVLLLRVLGY-DQETLARELGAY---GELVQGL----MDES---VFAMRPEEALIRLFTLLR 243 (1119)
T ss_dssp ETTTEEEEESSS--SEECHHHHHHHHTC-CHHHHHHHHHSS---CTTHHHH----SSCH---HHHTCHHHHHHHHHHHSS
T ss_pred cCCCEEEEEEeC--cceeHHHHHHHHCC-CHHHHHHHHccC---HHHHHHH----Hhhh---cccCCHHHHHHHHHHHhc
Confidence 247899999998 69999999999999 999999999853 3333333 2210 015689999999999998
Q ss_pred CCCCCChhhHHHHHhhcc-------cCcCCCcc--ccc-------------------chHHHHHHHHHhhccCCC--CCC
Q 001050 330 GTTFPPGESTEECMNTYL-------FPSLHGTK--QKA-------------------RFLGYMVKCLLQAYSGRR--KCD 379 (1173)
Q Consensus 330 ~~~~~~~e~~~~~L~~~l-------lpHl~~~~--~K~-------------------~~L~~Mi~kLl~~~~g~~--~~D 379 (1173)
+......+.|+.+|.+.| |+|+|+.. .|. ..|++|+++|+.+..|.+ .+|
T Consensus 244 ~g~~~~~e~a~~~l~~~ff~~~rydl~~vGr~~ln~kl~l~~~~~~~~~~~~~~l~~~di~~mi~~Ll~l~~G~~~~~~D 323 (1119)
T 2a6h_C 244 PGDPPKRDKAVAYVYGLIADPRRYDLGEAGRYKAEEKLGIRLSGRTLARFEDGEFKDEVFLPTLRYLFALTAGVPGHEVD 323 (1119)
T ss_dssp SCCCSCCSSHHHHHTSSSSSSCCSCTTTSSHHHHHTTSCSCCSTTTTCCCSSSCCCCTTHHHHHHHHHHHHTSCSSCCCC
T ss_pred CCCCCcHHHHHHHHHHhhCCcccccchhcchhhhhhhhccCCccccccccccccccHHHHHHHHHHHHHhhcCCCCCCCc
Confidence 877788899999999998 57887543 111 236789999999999999 999
Q ss_pred CcccccCcEEeehhhhHHHHHHHHHHHHHHHHHHHhhhcccCCcccccccccccccchhhccccccccccccccCccccc
Q 001050 380 NRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTER 459 (1173)
Q Consensus 380 D~D~l~nkRv~l~G~Ll~~lfr~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~i~~~~It~~i~~~~sTGnw~~~~~~~~q 459 (1173)
|+|||+||||+++|+||+.+||..|+++.+.+++++++. ..+.+ ++..+++++.||++|++||+|||
T Consensus 324 D~DhlgNkRv~~~GeLl~~~fr~~l~r~~~~i~~~~~~~--~~~~~-~~~~~i~~~~It~~lk~ff~tg~---------- 390 (1119)
T 2a6h_C 324 DIDHLGNRRIRTVGELMTDQFRVGLARLARGVRERMLMG--SEDSL-TPAKLVNSRPLEAAIREFFSRSQ---------- 390 (1119)
T ss_dssp CTTSTTTEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHS--CSSCC-SSTTTCCSHHHHHHHHHHHHTCS----------
T ss_pred CcchhhceEehhhhHHHHHHHHHHHHHHHHHHHHHhhhh--ccccc-chHHhhccchhHHHHHHHhhccC----------
Confidence 999999999999999999999999999999999999875 22345 57788999999999999999864
Q ss_pred cccceeecCCCChhhhhcccccccc----ccccCCcccccCCCCCCCcceeeecCCCCCcccccccccceeeeeecCcch
Q 001050 460 ISGIVANLGRANPLQTLVDLRRTRQ----QVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVSTSILE 535 (1173)
Q Consensus 460 ~sGvSQvldRlN~ls~lSh~Rrv~s----~~~~~~k~t~vR~Lhps~wG~iCPveTPEG~~cGLvk~LA~~a~It~~~~~ 535 (1173)
|||+|||+||+|+||||||+++ ++++++|+++||+||||||||+||+|||||+|||||||||++|+|+.
T Consensus 391 ---lSQ~Ldq~N~ls~LsH~RRisslgpggl~re~k~~~vRdlHpShwGriCPiETPEG~ncGLVknLAl~a~I~~---- 463 (1119)
T 2a6h_C 391 ---LSQFKDETNPLSSLRHKRRISALGPGGLTRERAGFDVRDVHRTHYGRICPVETPEGANIGLITSLAAYARVDE---- 463 (1119)
T ss_dssp ---SEEECCCSSTHHHHHHHHEEESSSSSSSCCSSCCHHHHSCCGGGTTTBCSSCSCSSSSCSSEEEBCSSCEECS----
T ss_pred ---ccccccccchHhhhhhhheecccCCCccccccccCcccccCHhhCcccCCCcCCCCCcccchhhhhhheeecc----
Confidence 8899999999999999999987 38899999999999999999999999999999999999999999985
Q ss_pred hHHHHHHhcCceecccccCccCCCcceeeeccEEEEEecChhHHHHHHHHHHhcCCCCceEEEEEeccCCeEEEeecCCe
Q 001050 536 PIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIFMDAGR 615 (1173)
Q Consensus 536 ~i~~~l~~~g~~~~~~~~~~~~~~~~~VflnG~~iG~~~~~~~~~~~lR~~rr~~~i~~~~~i~~~~~~~~i~I~sd~GR 615 (1173)
+|+.. + ...+| +||+|.+....-. ....... .|+. ..+. .|.||
T Consensus 464 --------~G~~e----~-----p~~~V-~nG~v~~~i~yl~-------a~ee~~~-----~i~~----~~~~--l~~gr 507 (1119)
T 2a6h_C 464 --------LGFIR----T-----PYRRV-VGGVVTDEVVYMT-------ATEEDRY-----TIAQ----ANTP--LEGNR 507 (1119)
T ss_dssp --------SSCEE----E-----EEEEE-ETTEEEEEEEEEC-------HHHHHHS-----CEEC----TTSC--BSSSB
T ss_pred --------cCccc----C-----CcEEE-ECCEEeeeeEEeC-------hhcccce-----EEec----Ccee--ecCCc
Confidence 12221 0 12345 6999854332100 0011100 1111 1111 25599
Q ss_pred eeeeEEEeecccccccccCCcchhHhhhhcCceeeecccccceeEEeecccccccccCCCCCceeeeeccccccccccee
Q 001050 616 ILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSC 695 (1173)
Q Consensus 616 l~RP~l~v~~~~~~~~~~~~~~~~~~l~~~g~iE~id~~Eq~~~~Ia~~~~~~~~~~~~~~~~~~th~Ei~p~~ilgv~a 695 (1173)
++||++.+.+. -|+ +.+. ...+|||||||++|||++|
T Consensus 508 ~~r~~i~~r~~---------------------~e~----------~~~~------------~~~~~~~ei~P~~ilsv~a 544 (1119)
T 2a6h_C 508 IAAERVVARRK---------------------GEP----------VIVS------------PEEVEFMDVSPKQVFSVNT 544 (1119)
T ss_dssp BCCSSEEEESS---------------------SSE----------EEEC------------TTTCCEEECCTTTTSCHHH
T ss_pred cccCceeEEec---------------------cce----------eeec------------hhHeEEEEecccccccccc
Confidence 99999876432 112 1111 3457999999999999999
Q ss_pred ecccccCCCccchhhhhhcccccccccccccC-----------------------------------Ceeeee---cccc
Q 001050 696 GIIPFANHDHARRVLYQSQKHSSQAIGFPTTN-----------------------------------PSIRVD---TLSH 737 (1173)
Q Consensus 696 slIPF~~hNqspRn~yqc~~M~KQaig~~~~n-----------------------------------~~~r~D---~~~~ 737 (1173)
|+|||+||||||||+|||| |+|||||++.++ +..|.| +..|
T Consensus 545 slIPF~ehn~s~R~lmgsn-M~kQAv~l~~~~~p~vgTg~e~~~a~ds~~~~~a~~~G~v~~vd~~~i~ir~~~~~~~~y 623 (1119)
T 2a6h_C 545 NLIPFLEHDDANRALMGSN-MQTQAVPLIRAQAPVVMTGLEERVVRDSLAALYAEEDGEVAKVDGNRIVVRYEDGRLVEY 623 (1119)
T ss_dssp HTCTTGGGBCHHHHHHHHH-HHTTBCCBSSCCCCSEECSCHHHHHHHTTCSEECSSSEEEEEECSSBEEEEETTTEEECC
T ss_pred ccCCCcccCCCcccccccc-cccccccccccCCCeeeccccceeeeccCceeEeccCCEEEEecCceEEEEccCCcceeE
Confidence 9999999999999999999 999999987653 445663 4567
Q ss_pred cc----------ccCCcceEeccccccccCCcc-cCCCCCCCCCccCCcccEEEEEecCCCCCCCeEEEecceeecCceE
Q 001050 738 QL----------FYPQRPLFRTMISDCLGKPGY-GHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFR 806 (1173)
Q Consensus 738 ~l----------~ypQ~Plv~t~~~~~~~~~~~-~~~~~~~~~~~~~G~N~~VAv~~~~Gyn~EDaiiin~~~~~rg~f~ 806 (1173)
.| +|||+|||+| .+++.+|++ ||+.++.++|+|+|+|++||||||+||||||||||||++++||+||
T Consensus 624 ~L~~~~rsnq~t~~~QkPiV~~--g~~v~~g~~ladg~~~~~gel~lG~N~lVA~m~~~GYN~EDAiiine~~v~rg~~t 701 (1119)
T 2a6h_C 624 PLRRFYRSNQGTALDQRPRVVV--GQRVRKGDLLADGPASENGFLALGQNVLVAIMPFDGYNFEDAIVISEELLKRDFYT 701 (1119)
T ss_dssp BCCCSEECTTSCEECCEECCCS--SCCBCTTCEEEECTTBSSSSBCCSEEEEEECSCCSSTTSSSEEEEETHHHHTTCSE
T ss_pred EeeccccccccccccccceEee--CceeeccceeccccccCCCcccCceeEEEEEecccCCcchhhhhhhhhHHhcCCce
Confidence 65 8999999997 478999999 9999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEEEeeeccccccccccccccccccccccccccCCCCCCCCcccCcEEccCCeEEEEecCC-------------
Q 001050 807 SEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADS------------- 873 (1173)
Q Consensus 807 s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~Ld~dGi~~~g~~v~~gdili~k~~~~------------- 873 (1173)
|+|+++|++++++++ .+.|++....+. .....|++||+||||++|++|++|||||||++|+
T Consensus 702 Sihi~~~e~~~r~~~--~g~eeit~~ip~----~~~~~~~~LD~dGiv~iG~~V~~gDiLvgK~tP~~~~~~~~ee~ll~ 775 (1119)
T 2a6h_C 702 SIHIERYEIEARDTK--LGPERITRDIPH----LSEAALRDLDEEGVVRIGAEVKPGDILVGRTSFKGESEPTPEERLLR 775 (1119)
T ss_dssp EEEEEEEEEEEECCT--TCCCBCCSCCSS----SCSGGGSSCCSSSBCCTTCBCCTTSEEECCEEESSSSSCCHHHHHHH
T ss_pred EEEEEEEEeeeeecC--CCceeeeccCCC----cchhhhhccCCCcccCCCCEECCCCEEEEEecCCccccCChhhhhhh
Confidence 999999999998754 455666421111 1223489999999999999999999999999975
Q ss_pred ---------CceeeEEccCCCceEEEEEEEEeCCC-CC-------eEEEEEEeeccCCCccccccccCCCceEEeeeecC
Q 001050 874 ---------GADHSIKLKHTERGMVQKVVLSSNDD-GK-------NFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQ 936 (1173)
Q Consensus 874 ---------~~~~s~~~~~~~~g~v~~v~~~~~~~-~~-------~~~~v~~r~~R~~~iGDK~ssRhGqKGvvs~i~~~ 936 (1173)
.+|+|+++++++.|+|++|+++++++ |. +.|||++|+.|+|+||||||||||||||||+|||+
T Consensus 776 aifg~k~~~~rd~Sl~~~~~e~G~V~~V~~~~~~~~g~~l~~~~~~~vkV~i~~~R~~~vGDKfasRHGqKGVis~i~p~ 855 (1119)
T 2a6h_C 776 SIFGEKARDVKDTSLRVPPGEGGIVVRTVRLRRGDPGVELKPGVREVVRVYVAQKRKLQVGDKLANRHGNKGVVAKILPV 855 (1119)
T ss_dssp HHHHSCCCCEEECCEECCSSCCCEEEEEEEECSSCSSCCCCTTEEEEEEEEEEEEEECCTTCEEECTTSCEEEEEEEECT
T ss_pred hhhcccccccceeeEEccCCccEEEEEEEEEccCCCCcccCCCcceEEEEEEcccCCcccCchhhhccCCCceEEeeecc
Confidence 36999999999999999999998876 64 78999999999999999999999999999999999
Q ss_pred CCcCCCCCCCcCcEEeCCCCCCCCCChHHHHHHHHHHHHHhcCccccCCCEEEecC-CCCCCHHHHHHHHHHc-------
Q 001050 937 ENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKRYATP-FATPSVDAITEQLHRA------- 1008 (1173)
Q Consensus 937 ~dmPf~~~G~~pDiI~NPh~~PSRMtiGql~E~~~gk~~~~~~~~~~~g~~~~~tp-F~~~~~~~~~~~l~~~------- 1008 (1173)
|||||++||++|||||||||||||||||||+|+++||||+ +.|... +|| |++.+.+++.+.|+++
T Consensus 856 eDMPf~~dG~~pDiIlNPhgvPSRMtiGqllE~~lG~a~~------~~g~~~-atp~F~~~~~~~i~~~L~~~~~~~~~~ 928 (1119)
T 2a6h_C 856 EDMPHLPDGTPVDVILNPLGVPSRMNLGQILETHLGLAGY------FLGQRY-ISPIFDGAKEPEIKELLAQAFEVYFGK 928 (1119)
T ss_dssp TTSCBCSSSCBCSEECCSTTTTTTTBTHHHHHHHHHHHHH------HTTEEE-ECCTTTSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccCCCCccEEeCCCcCccccchhhhhHHHhhhHHh------hcCCce-EecccCCCCHHHHHHHHHHhhhhcccc
Confidence 9999999999999999999999999999999999999999 667655 999 9999999999999999
Q ss_pred ----------------------CC--------------CCCCceEeeeCCCCcEEEeeEeEeeeehhccccccCccceee
Q 001050 1009 ----------------------GF--------------SKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFR 1052 (1173)
Q Consensus 1009 ----------------------g~--------------~~~G~e~ly~g~tG~~~~~~i~~G~~yy~rL~Hmv~dK~~~R 1052 (1173)
|| +++|++.||||+||++|+++||+|++|||||+|||+||+|||
T Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~Gk~~lydG~TGe~~~~~I~vG~~Yy~kL~HmVdDKihaR 1008 (1119)
T 2a6h_C 929 RKGEGFGVDKREVEVLRRAEKLGLVTPGKTPEEQLKELFLQGKVVLYDGRTGEPIEGPIVVGQMFIMKLYHMVEDKMHAR 1008 (1119)
T ss_dssp HHHHTCCCBHHHHHHHHHHHTTTSSCTTSCHHHHHHHHHHTTEECCBCSSSCCBCSSCEEEEEEEEEEBCCCTTTSCEEE
T ss_pred ccccccccchhhhhhhhhhhcCCcccccccchhhhcccCCCCceEeecCCCCCCccceEEEEhHHhhcchhhcccCcEEe
Confidence 99 899999999999999999999999999999999999999999
Q ss_pred ecCCCCccccCCcccccccCceeeeehhhhHHHHhhhHHHHHHhhhcCCCccceecccccCCccchheeeecCCcccCCc
Q 001050 1053 NTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGP 1132 (1173)
Q Consensus 1053 ~~Gp~~~lT~QP~~Gr~~~GG~R~GEME~d~l~a~Ga~~~l~erl~~~SD~~~~~vc~~cg~~~~~~~~~~~~~~~~~~~ 1132 (1173)
|+|||++|||||++||+|+|||||||||||||+|||||++|||||+.+||. + ||+.. .
T Consensus 1009 s~GP~s~lTqQP~~Gra~~GGqRfGEME~~aL~a~GAa~~L~E~L~~kSD~----~---~gr~~---------------~ 1066 (1119)
T 2a6h_C 1009 STGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAHTLQEMLTLKSDD----I---EGRNA---------------A 1066 (1119)
T ss_dssp SSCCBCSSSCSBCCCSSSCCCEEECHHHHHHHHHTTCSHHHHHHHTTTTTC----H---HHHHH---------------H
T ss_pred eccccceeecCCCcccccCCCeeeehhehhhhhhccHHHHHHHHhccCCcc----c---ccccc---------------e
Confidence 999999999999999999999999999999999999999999999999993 3 45432 2
Q ss_pred cccccCCCCCcccccchHhHHHHHHHHHhcCCcEEEEEe
Q 001050 1133 YCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171 (1173)
Q Consensus 1133 ~c~~c~~~~~~~~~~iPy~~k~L~~EL~sm~i~~~l~~~ 1171 (1173)
+|.+|+ +.++.++.||||||||+|||+||||++++.++
T Consensus 1067 ~~~~~~-~~~i~~~~iP~sfk~L~~EL~sl~i~~~l~~~ 1104 (1119)
T 2a6h_C 1067 YEAIIK-GEDVPEPSVPESFRVLVKELQALALDVQTLDE 1104 (1119)
T ss_dssp HHHHHT-TCCCCCCCCCHHHHHHHHHHHHSSCEECCBCS
T ss_pred EEEeec-CCccCccCCCHHHHHHHHHHHhCCCceEEEec
Confidence 577784 56899999999999999999999999998753
No 5
>3lu0_C DNA-directed RNA polymerase subunit beta; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_C*
Probab=100.00 E-value=1.2e-213 Score=1971.87 Aligned_cols=932 Identities=25% Similarity=0.365 Sum_probs=785.7
Q ss_pred hhhhcccccCcCCchHHHHHHHHHHHH------hHHHHHhcccCceEeCCCCCCCCCCCCcceeEEEEEceEEEccCccc
Q 001050 26 CRKAAVSFFNEYGLVSHQINSYNEFIK------NGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFF 99 (1173)
Q Consensus 26 ~~~~i~~~f~~~~Lv~~qi~SFN~Fi~------~gL~~ii~~~~pI~~~~~~~~~~~~~~~~~~~~l~f~~i~i~~P~~~ 99 (1173)
.|.-++..+..|+|+++|++||+||++ +||++++++++||+.. ...+.|+|.++++++|.++
T Consensus 14 ~f~k~~~~~~~P~Ll~iQ~~Sf~~Fl~~~~r~~~GL~evf~~~fPI~d~------------~~~~~Lef~~y~l~~Pk~~ 81 (1342)
T 3lu0_C 14 DFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSY------------SGNSELQYVSYRLGEPVFD 81 (1342)
T ss_dssp CSSCCCCSSCCCCGGGTTHHHHHHHSCSSSCSCSTTHHHHTTTSSCEET------------TTTEECCEEEECCCCCSCC
T ss_pred ccccCCcCCCCCCHHHHHHHHHHHHHcCCccccchHHHHHHhcCCEECC------------CCCEEEEEeeEEeCCCCCC
Confidence 467788889999999999999999997 8999999999999752 1347889999999999998
Q ss_pred cCCCCCcCCCChhhHHhcCCcccceEEEEEEEEEeeccccccccccccccceeeccccccceeEEEecccceEecCCccc
Q 001050 100 AGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCW 179 (1173)
Q Consensus 100 e~~~~~~~~l~P~ecR~r~~TYsa~l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lG~IPIMvkS~~C~ 179 (1173)
+.+ ||+|++||+|||+|++++...++ +.++++ ..+.++++|++|+||+|+.
T Consensus 82 ~~E-----------c~~r~lTYsapL~v~~rL~~~~~------d~~~~~-------~~eikeq~Vy~GdiPLMT~----- 132 (1342)
T 3lu0_C 82 VQE-----------CQIRGVTYSAPLRVKLRLVIYER------EAPEGT-------VKDIKEQEVYMGEIPLMTD----- 132 (1342)
T ss_dssp SST-----------TTSSCCCCCCCCBEEECCEECCC------SSCCCC-------CCCCCBCCCBCCCCCCCCS-----
T ss_pred HHH-----------HHhcCCCcccceEEEEEEEEecc------cccccc-------ccceEEEEEEEecCceECC-----
Confidence 765 99999999999999999987431 111110 1234568999999999987
Q ss_pred cCCCcCCCCcCCCCcEEEEeCcEEEeEeeeeeccceEEEec--C------CceEEEEEeecCCceEEEEEEecCcccccc
Q 001050 180 MKGVEKGDCDFDHGGYFIIKGAEKVFVAQEQICLKRLWVSN--S------MGWTVAYKSENKRNRLIVRLVDMSKFEDIK 251 (1173)
Q Consensus 180 L~~~~~gE~~~D~GGYFIING~ERVIi~Qe~~spnr~~i~~--~------~~~~a~irS~~~~~~~~i~~~~~~~~~~~~ 251 (1173)
+|||||||+|||||+|++||||.+|-.. + ..|+|.+++. ++.|+.++. ++
T Consensus 133 -------------~GtFIING~ERVIVsQl~RSPGVyf~~~~~k~~~~gk~lysa~IIP~---RGsWlefe~------D~ 190 (1342)
T 3lu0_C 133 -------------NGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPY---RGSWLDFEF------DP 190 (1342)
T ss_dssp -------------SSCEESSSSEEECCEEEECCSSCCCCSCCSCSSSCCCSCCEEEECCS---SSCCEEEEE------ET
T ss_pred -------------CcEEEEcCceEEEEEeecccCceeEeccccccCCCCceEEEEEEecC---CCccEEEEE------cC
Confidence 9999999999999999999999666531 1 1589999865 457887753 45
Q ss_pred CCEEEEEEeeccccccHhhHHHHhcCCChHHHHHHhcCCCC------------------------c--------------
Q 001050 252 GGEKVLSVYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCE------------------------D-------------- 293 (1173)
Q Consensus 252 ~~~i~v~i~~~k~~IPl~illrALG~~sD~eI~~~i~~~~~------------------------d-------------- 293 (1173)
++.+|+++++ +++||+++||||||+ +++||++.++.... |
T Consensus 191 kd~l~vrIdr-~rKipvt~lLrALG~-~~~~Il~~f~~~~~~~~~~~~~~~~~~~e~~~g~~~~~di~~~g~vi~~~g~~ 268 (1342)
T 3lu0_C 191 KDNLFVRIDR-RRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRR 268 (1342)
T ss_dssp TTEEEEEESS-CSCEETTHHHHTTTC-CHHHHHTTTSCEEEECEETTEEEECCCGGGGTTEECCSCEEETTEEEECSSSE
T ss_pred CCeEEEEecC-CCceeeehhHhHhCC-CHHHHHHHhcccceEEeccCceeeecchhhhcccccccchhccccceeccccc
Confidence 7999999998 679999999999999 57899988742100 0
Q ss_pred --hHHHHH--------------------------------------------HHHhhHhhhc------------------
Q 001050 294 --CSILNI--------------------------------------------LFASIHDADN------------------ 309 (1173)
Q Consensus 294 --~~~~~~--------------------------------------------l~~~l~~~~~------------------ 309 (1173)
...... +...+.++..
T Consensus 269 it~~~~~~l~~~g~~~i~v~~~~l~g~~la~divd~~tge~~~~~~~~i~~~~l~~l~~~~i~~~~~l~~~~~~~~~~i~ 348 (1342)
T 3lu0_C 269 ITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYIS 348 (1342)
T ss_dssp ECSHHHHHHHHTTCCCEECCSHHHHTSEECSCEECTTTCCEEECSSCBCCTTHHHHHHHHTCSCEEEECCCSSSSCCSGG
T ss_pred ccHHHHHHHHhccCcccccCHHHhhcchhhheeeecCCCeEEecCCcccCHHHHHHHHHcCCcEEEEEecccccccHHHH
Confidence 000000 0011111100
Q ss_pred ---cCCcCCCHHHHHHHHHhhccCCCCCChhhHHHHHhhccc-------CcCCCcc---------------cccchHHHH
Q 001050 310 ---KCDEFRKGRNALKYVDKLIKGTTFPPGESTEECMNTYLF-------PSLHGTK---------------QKARFLGYM 364 (1173)
Q Consensus 310 ---~~~~i~t~e~al~yig~~~~~~~~~~~e~~~~~L~~~ll-------pHl~~~~---------------~K~~~L~~M 364 (1173)
..+...|+++||.+|++++++......+.|+.+|++.|| +|+|+.+ -+...++.+
T Consensus 349 ~tl~~d~~~~~~eAl~~iyr~lrpgep~t~e~a~~l~~~lFf~~~rYdL~~VGR~k~N~kL~l~~~~~~~~Lt~~DIi~~ 428 (1342)
T 3lu0_C 349 ETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDV 428 (1342)
T ss_dssp GTTTTCCCCSSHHHHHHHHHHHSCSSCCCTTHHHHHHHHHHSCTTTCCCTTTHHHHHHTTTTCSCCCCCSSCCTTHHHHH
T ss_pred HHHhhccCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhhcCcccccchhhhhHHHhhhcCCCcCccccEecHHHHHHH
Confidence 012356899999999999999888889999999988876 6777432 123445679
Q ss_pred HHHHHhhccCCCCCCCcccccCcEEeehhhhHHHHHHHHHHHHHHHHHHHhhhcccCCcccccccccccccchhhccccc
Q 001050 365 VKCLLQAYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRA 444 (1173)
Q Consensus 365 i~kLl~~~~g~~~~DD~D~l~nkRv~l~G~Ll~~lfr~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~i~~~~It~~i~~~ 444 (1173)
+++|+.+..|....||+|||+||||+++|+||+++||.+|.++.+.++++|.+. ..+.+ ++..+++++++|+++++|
T Consensus 429 i~~Li~l~~g~~~~DDiDHLgNrRvr~vGeLl~~qfr~~l~r~~r~i~~~~~~~--~~~~~-~~~~lin~~~i~~~~k~f 505 (1342)
T 3lu0_C 429 MKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLG--DLDTL-MPQDMINAKPISAAVKEF 505 (1342)
T ss_dssp HHHHHHHHHTSSCCCCSSSTTTSEEECHHHHHHHTHHHHHHHHHHHHTTHHHHC--CSSCC-SSTTTCCSSTTHHHHTTT
T ss_pred HHHHHHHhhCCCCCcchhhhhcchhchHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccccC-CHHHHhccchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999874 23345 577899999999999999
Q ss_pred cccccccccCccccccccceeecCCCChhhhhcccccccc----ccccCCcccccCCCCCCCcceeeecCCCCCcccccc
Q 001050 445 FSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQ----QVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLV 520 (1173)
Q Consensus 445 ~sTGnw~~~~~~~~q~sGvSQvldRlN~ls~lSh~Rrv~s----~~~~~~k~t~vR~Lhps~wG~iCPveTPEG~~cGLv 520 (1173)
|+ ++||||+|||+||||+|||+||+++ .+.++++.++||+|||||||||||+|||||+|||||
T Consensus 506 fg-------------~s~lSQ~lDqtNpLseltHkRRlsalGPGGLsr~~a~fevRdvH~thyGRiCPiETPEG~niGLI 572 (1342)
T 3lu0_C 506 FG-------------SSQLSQFMVQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLI 572 (1342)
T ss_dssp TT-------------TCSSCEECCCSSHHHHHHHHSBEESCCSTTSCCSSCCTTTSSCCTTCSSSSCTTCCCSSSCSSSC
T ss_pred hC-------------ccccceeecCCCHHHHHhhhhcccccCCCCccccccCceecccCcccccccccccCCCCCceeee
Confidence 95 5899999999999999999999974 367899999999999999999999999999999999
Q ss_pred cccceeeeeec-Cc-chhHHHHHHhcCceecccccCccCCCcceeeeccEEEEEecChhHHHHHHHHHHhcCCCCceEEE
Q 001050 521 KNLGVTGLVST-SI-LEPIFEQLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEI 598 (1173)
Q Consensus 521 k~LA~~a~It~-~~-~~~i~~~l~~~g~~~~~~~~~~~~~~~~~VflnG~~iG~~~~~~~~~~~lR~~rr~~~i~~~~~i 598 (1173)
+|||++|+|+. |+ ++|+ .+..||++-
T Consensus 573 ~sLA~~a~in~~GfietPy------------------------r~V~~g~v~---------------------------- 600 (1342)
T 3lu0_C 573 NSLSVYAQTNEYGFLETPY------------------------RKVTDGVVT---------------------------- 600 (1342)
T ss_dssp CBCCSSCCBCSSSCBCEEE------------------------EEEETTEEE----------------------------
T ss_pred cchhheEEeccCCcccCCc------------------------EEEECCEEc----------------------------
Confidence 99999999986 44 4442 223566531
Q ss_pred EEeccCCeEEEeecCCeeeeeEEEeecccccccccCCcchhHhhhhcCceeeecccccceeEEeecccccccccCC----
Q 001050 599 KRDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQALLDHGIIELVGTEEEEDCCTAWGIKYLLKDIED---- 674 (1173)
Q Consensus 599 ~~~~~~~~i~I~sd~GRl~RP~l~v~~~~~~~~~~~~~~~~~~l~~~g~iE~id~~Eq~~~~Ia~~~~~~~~~~~~---- 674 (1173)
+.|+|+++.||+...||.....+.+....
T Consensus 601 -----------------------------------------------~~i~yLsA~eE~~~~IAqan~~l~~~g~~~~~~ 633 (1342)
T 3lu0_C 601 -----------------------------------------------DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDL 633 (1342)
T ss_dssp -----------------------------------------------EEEEEECTTTGGGSCBCCSSSCCSSSSCCSCSS
T ss_pred -----------------------------------------------CceeeCChHHhcCceEEecCcccCCCCcccCCe
Confidence 12566666666666666655444322110
Q ss_pred -----------CCCceeeeecccccccccceeecccccCCCccchhhhhhccccccccccc-------------------
Q 001050 675 -----------KKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFP------------------- 724 (1173)
Q Consensus 675 -----------~~~~~~th~Ei~p~~ilgv~aslIPF~~hNqspRn~yqc~~M~KQaig~~------------------- 724 (1173)
..+.+++|||++|.+|+|++||+|||++||||+|++|||+ |++||+|+.
T Consensus 634 v~~R~~~e~~~~~~~~v~~~dvsP~qivSvaaslIPFLEhdDAnRaLMGsN-MQRQAVPLl~~e~p~VgTG~E~~~a~ds 712 (1342)
T 3lu0_C 634 VTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMGAN-MQRQAVPTLRADKPLVGTGMERAVAVDS 712 (1342)
T ss_dssp EEEECSSCEEEECTTTCCEEESCTTTTSCHHHHSCTTSTTBCHHHHHHHHH-TTTTBCCCSSCCCCSSBCSCHHHHHHHT
T ss_pred EEEEecCceEEeChHHCeeEecCHHHhcchhhccCCCcccCCccccchhhh-ccccccccccCCCCeEecccchheeecC
Confidence 1245689999999999999999999999999999999999 999999997
Q ss_pred ----------------ccCCeeeeecc----------cc----------ccccCCcceEeccccccccCCcc-cCCCCCC
Q 001050 725 ----------------TTNPSIRVDTL----------SH----------QLFYPQRPLFRTMISDCLGKPGY-GHNHILP 767 (1173)
Q Consensus 725 ----------------~~n~~~r~D~~----------~~----------~l~ypQ~Plv~t~~~~~~~~~~~-~~~~~~~ 767 (1173)
+.++..|.|.. .| -++|+|||+|++ ++.+.+||+ ||++++.
T Consensus 713 g~~i~a~~~G~v~~vda~~I~Ir~~~~~~~~~~~~~~~y~L~kf~RSNq~Tc~~QrPiV~~--G~~V~~GdilADG~st~ 790 (1342)
T 3lu0_C 713 GVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSL--GEPVERGDVLADGPSTD 790 (1342)
T ss_dssp TTSCBCSSCBEECCCCSSBCCEEECSSSSSSSCCEEECCBCCCSCBCSSSCBCCCCBCCCS--SCCBCTTCBCBCCSSCS
T ss_pred CceEEecCCCEEEEecCCeEEEEeCCCccccccCcceEEEecccccccccccccccceeec--CCEEecCcEeccccccc
Confidence 66777787751 12 269999999996 699999999 9999999
Q ss_pred CCCccCCcccEEEEEecCCCCCCCeEEEecceeecCceEEEEEEEEEEEeeeccccccccccccccccccccccccccCC
Q 001050 768 RPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDS 847 (1173)
Q Consensus 768 ~~~~~~G~N~~VAv~~~~Gyn~EDaiiin~~~~~rg~f~s~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 847 (1173)
.+|+|+|+|++||||||.|||||||||||++++++|+|||+|+++|++++++++ .+.|+|+...+.. ....+++
T Consensus 791 ~GElaLG~N~lVAfMpW~GYNfEDAIlISErlV~eD~fTSIHIee~e~~aRdtk--lG~EeiTrdIPnv----~e~al~~ 864 (1342)
T 3lu0_C 791 LGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTK--LGPEEITADIPNV----GEAALSK 864 (1342)
T ss_dssp SSSCCCSEECCEECCCCSSTTSSSEEEECTHHHHTTTSCEEEEEEEEEECCEET--TEECCCCSCCSSC----CHHHHHS
T ss_pred CCeeecccccEEEEecccCcccccchhhhhhhhhcCCceeEEEEEEeeeeeecC--CCCceecccCCCC----ChHHHhc
Confidence 999999999999999999999999999999999999999999999999999865 5778884322221 1234899
Q ss_pred CCCCCCcccCcEEccCCeEEEEecCC----------------------CceeeEEccCCCceEEEEEEEEeCC-------
Q 001050 848 LDDDGFPFIGANLQSGDIVIGKYADS----------------------GADHSIKLKHTERGMVQKVVLSSND------- 898 (1173)
Q Consensus 848 Ld~dGi~~~g~~v~~gdili~k~~~~----------------------~~~~s~~~~~~~~g~v~~v~~~~~~------- 898 (1173)
||++|||++|++|++|||||||++|+ .+|+|+++|+++.|+|++|++++.+
T Consensus 865 LDe~GIv~iGa~V~~GDILVGKvtPkge~~~tpEekLLraIFGeka~~vkDtSL~vp~g~~G~Vidv~~f~r~~~~k~~~ 944 (1342)
T 3lu0_C 865 LDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKR 944 (1342)
T ss_dssp BCSSSCBCTTCCCCTTCEEECCCCBCCTTTCCHHHHHGGGTSCSSSSSBCCCCEECCTTCCCEEEECCCCCCGGGCCCTH
T ss_pred CCCCCCeecCcEECCCCEEEeccCCCCCCcCChHHHHHHHHhcCcccccccCcEecCCCCcEEEEEEEEEecccccchhh
Confidence 99999999999999999999999997 5899999999999999999988642
Q ss_pred --------------------------------------------------------------------------------
Q 001050 899 -------------------------------------------------------------------------------- 898 (1173)
Q Consensus 899 -------------------------------------------------------------------------------- 898 (1173)
T Consensus 945 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~g~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1024 (1342)
T 3lu0_C 945 ALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHE 1024 (1342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHTTSCGGGTTTCCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHhhCCHHHhhccccCcHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred --------------------CCCeEEEEEEeeccCCCccccccccCCCceEEeeeecCCCcCCCCCCCcCcEEeCCCCCC
Q 001050 899 --------------------DGKNFSVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFP 958 (1173)
Q Consensus 899 --------------------~~~~~~~v~~r~~R~~~iGDK~ssRhGqKGvvs~i~~~~dmPf~~~G~~pDiI~NPh~~P 958 (1173)
...+.|||++|+.|+|++|||||||||||||||+|||+|||||++||++|||||||||||
T Consensus 1025 ~~~~~~~k~~~~~~gd~l~~gv~k~VkV~ia~kRk~qvGDK~AgRHGnKGVis~I~p~EDMPf~~dG~~pDIIlNP~gvP 1104 (1342)
T 3lu0_C 1025 FEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVP 1104 (1342)
T ss_dssp HHHHHHHHHHHTTSCCCCCSSSSCEEEEEEEEEECCCTTCEEECSSSCCEEECCCCCTTTSCEETTEEECSEECCGGGTT
T ss_pred HHHHHHHHHHhcccCcccCcCCceEEEEEEEEeccCCCCCCcccccCCCceEEEEecccCCCCCCCCCCCcEEeCCCCCC
Confidence 135789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHhcCccc--------------------c-CC--------------------------CEEEec
Q 001050 959 SRQTPGQLLEAALGKGIAALGKGI--------------------C-SG--------------------------LKRYAT 991 (1173)
Q Consensus 959 SRMtiGql~E~~~gk~~~~~~~~~--------------------~-~g--------------------------~~~~~t 991 (1173)
||||||||+|+++||||+.+|+.+ + .| ....+|
T Consensus 1105 SRMnIGqilE~~lG~aa~~~G~~i~~~~~~~~~~~~~r~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~aT 1184 (1342)
T 3lu0_C 1105 SRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIAT 1184 (1342)
T ss_dssp SSCBTHHHHHHHHHHGGGTSSTHHHHTTTHHHHCTTTHHHHHHHTTTTCCCSSSCCTTTSCHHHHHHTTTTTSSCTTCBC
T ss_pred CccchhhhhHHhhhHHHHhcCchHHHHHHhhhhhHHHHHHHHHHhhcccccchhhhhcccchHHHHHHhhhhccCCcccC
Confidence 999999999999999999666531 0 01 012489
Q ss_pred C-CCCCCHHHHHHHHHHcCCCCCCceEeeeCCCCcEEEeeEeEeeeehhccccccCccceeeecCCCCccccCCcccccc
Q 001050 992 P-FATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKR 1070 (1173)
Q Consensus 992 p-F~~~~~~~~~~~l~~~g~~~~G~e~ly~g~tG~~~~~~i~~G~~yy~rL~Hmv~dK~~~R~~Gp~~~lT~QP~~Gr~~ 1070 (1173)
| |++.+.+++.+.|.++||+++|+++||||+||++|+++||||++|||||+|||+||+||||+|||++|||||++||+|
T Consensus 1185 PvFdga~~~~i~~~L~~aG~~~~Gk~~LydGrTGe~f~~~V~vG~~YylKL~HmVdDKiHaRs~GPysllTqQPl~Gkaq 1264 (1342)
T 3lu0_C 1185 PVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQ 1264 (1342)
T ss_dssp CSSSSCCHHHHHHHTSSSSSCSSSCBCCBCSSSCSBCSSCBCEECCEEEEBCCCGGGSCCCBSSCCBCSSSCCBCCCSSS
T ss_pred CCCCCCCHHHHHHHHHHcCCCCCCCEEEEcCCCCCCcccceeeeehhHhhhhhccccceEEeccCCCcccccCCCCcccc
Confidence 9 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceeeeehhhhHHHHhhhHHHHHHhhhcCCCccceecccccCCccchheeeecCCcccCCccccccCCCCCcccccchH
Q 001050 1071 FGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPY 1150 (1173)
Q Consensus 1071 ~GG~R~GEME~d~l~a~Ga~~~l~erl~~~SD~~~~~vc~~cg~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~iPy 1150 (1173)
+|||||||||||||+|||||++|||||+.+|| +||.+|+ .+|.+|+ +.++..+.|||
T Consensus 1265 ~GGqRfGEMEvwaL~a~GAa~~LqE~Lt~kSD----dv~gr~~------------------~y~~i~~-g~~~~~~~iPe 1321 (1342)
T 3lu0_C 1265 FGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD----DVNGRTK------------------MYKNIVD-GNHQMEPGMPE 1321 (1342)
T ss_dssp CCCCCCCHHHHHHHHHSSCSHHHHHHTTTSSS----CHHHHHH------------------HHHHHTT-TSCCCCCCCCH
T ss_pred CCCeeeehHHHHHHHhccHHHHHHHHhhcCCC----ccccchh------------------hhhhhcC-CCCCCcCCCCH
Confidence 99999999999999999999999999999999 5665542 2577775 46899999999
Q ss_pred hHHHHHHHHHhcCCcEEEE
Q 001050 1151 GAKLLCQELFSMGITLKFD 1169 (1173)
Q Consensus 1151 ~~k~L~~EL~sm~i~~~l~ 1169 (1173)
|||+|++||+||||++++.
T Consensus 1322 sfkvL~~EL~sl~l~v~l~ 1340 (1342)
T 3lu0_C 1322 SFNVLLKEIRSLGINIELE 1340 (1342)
T ss_dssp HHHHHHHHHHTSSCCEECC
T ss_pred HHHHHHHHHHhCCCCeEec
Confidence 9999999999999999875
No 6
>3mlq_A DNA-directed RNA polymerase subunit beta; tudor, transferase-transcription complex; 2.91A {Thermus aquaticus}
Probab=99.96 E-value=1.7e-29 Score=262.65 Aligned_cols=123 Identities=24% Similarity=0.367 Sum_probs=105.5
Q ss_pred CchHHHHHHHHHHH----------HhHHHHHhcccCceEeCCCCCCCCCCCCcceeEEEEEceEEEccCccccCCCCCcC
Q 001050 38 GLVSHQINSYNEFI----------KNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQVTLDKPSFFAGNGGDEH 107 (1173)
Q Consensus 38 ~Lv~~qi~SFN~Fi----------~~gL~~ii~~~~pI~~~~~~~~~~~~~~~~~~~~l~f~~i~i~~P~~~e~~~~~~~ 107 (1173)
+|+++|++|||||+ ++||++++++++||+...+ ....+.|+|.++++++|.
T Consensus 2 ~Lv~~Q~~SF~~Flq~~~~~~~r~~~GL~ei~~~~~pI~~~~~---------~~~~~~L~f~~~~l~~P~---------- 62 (188)
T 3mlq_A 2 PLTEIQVESYKKALQADVPPEKRENVGIQAAFKETFPIEEGDK---------GKGGLVLDFLEYRIGDPP---------- 62 (188)
T ss_dssp CCHHHHHHHHHHHHCTTSCGGGCCSCHHHHHHHHHCCEEECCS---------SSCCEEEEEEEEEECCCS----------
T ss_pred CHHHHHHHHHHHHHhCCcccccchhhcHHHHHHhcCCeeeccC---------CCCeEEEEEEEEEecCCC----------
Confidence 79999999999999 8999999999999986321 013588999999999995
Q ss_pred CCChhhHHhcCCcccceEEEEEEEEEeeccccccccccccccceeeccccccceeEEEecccceEecCCccccCCCcCCC
Q 001050 108 DMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGD 187 (1173)
Q Consensus 108 ~l~P~ecR~r~~TYsa~l~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lG~IPIMvkS~~C~L~~~~~gE 187 (1173)
++|+|||+|++||+|||+|++++...+ ++ ..++++|++|+||||+.
T Consensus 63 -~~p~Ecr~r~lTYsapl~v~v~l~~~~----------~~----------~i~~~~v~iG~iPlMt~------------- 108 (188)
T 3mlq_A 63 -FSQDECREKDLTYQAPLYARLQLIHKD----------TG----------LIKEDEVFLGHLPLMTE------------- 108 (188)
T ss_dssp -SCHHHHHHTTCCCEEEEEEEEEEEETT----------TC----------CEEEEEEEEEEEECCCT-------------
T ss_pred -CCHHHHHhcCCCcceeEEEEEEEEECC----------Cc----------eEEEEEEEEcccCEECC-------------
Confidence 579999999999999999999997521 11 12357899999999985
Q ss_pred CcCCCCcEEEEeCcEEEeEeeeeeccceEEE
Q 001050 188 CDFDHGGYFIIKGAEKVFVAQEQICLKRLWV 218 (1173)
Q Consensus 188 ~~~D~GGYFIING~ERVIi~Qe~~spnr~~i 218 (1173)
||||||||+|||||+||++++|.++.
T Consensus 109 -----gGyFIING~ERVIVsQe~r~~gell~ 134 (188)
T 3mlq_A 109 -----DGSFIINGADRVIVSQGGRTVGELMA 134 (188)
T ss_dssp -----TSCEEETTEEEECCCCSSSCHHHHHH
T ss_pred -----CCEEEECCEEEEEEEeecccCCeeeE
Confidence 99999999999999999999998775
No 7
>3tbi_B DNA-directed RNA polymerase subunit beta; transcription accessory protein, transcription; 3.00A {Escherichia coli}
Probab=99.25 E-value=4.3e-12 Score=133.48 Aligned_cols=85 Identities=22% Similarity=0.354 Sum_probs=72.0
Q ss_pred EEEEEEEEEeeeccccccccccccccccccccccccccCCCCCCCCcccCcEEccCCeEEEEecCC--------------
Q 001050 808 EHIRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADS-------------- 873 (1173)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~Ld~dGi~~~g~~v~~gdili~k~~~~-------------- 873 (1173)
+|+..|+++++++. .+.|+|+.+.+... ...+++||++||+++|++|++|||||||++|+
T Consensus 2 iHIeeyei~~r~tk--~G~EeIT~dIPnv~----e~~l~~LDe~GIV~iGs~V~~GDILVGKvTPk~~~~~tpEekLL~a 75 (228)
T 3tbi_B 2 IHIQELACVSRDTK--LGPEEITADIPNVG----EAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRA 75 (228)
T ss_dssp CEEEEEEEEEEEET--TEECEESSCCSSCC----HHHHHTBCTTSBBCTTCCCBTTCEEECEEEECCGGGCCHHHHHHHH
T ss_pred ccEEEEEEEEEEcC--CCCeEEecCCCCcc----HHHHhcCCCCCCeecCCEECCCCEEEeccCCCCCCCCChHHHHHHH
Confidence 59999999999865 57788854333211 23489999999999999999999999999997
Q ss_pred --------CceeeEEccCCCceEEEEEEEEeCC
Q 001050 874 --------GADHSIKLKHTERGMVQKVVLSSND 898 (1173)
Q Consensus 874 --------~~~~s~~~~~~~~g~v~~v~~~~~~ 898 (1173)
.+|+|+++|+++.|+|++|.+++..
T Consensus 76 Ifg~k~~~vkDtSL~vp~G~~G~VidV~if~r~ 108 (228)
T 3tbi_B 76 IFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRD 108 (228)
T ss_dssp HHCTTSSCEEECCEECCSSCBEEEEEEEEEEBT
T ss_pred HhCCccccceeCcEecCCCCcEEEEEEEEEecC
Confidence 3899999999999999999999764
No 8
>3qqc_A DNA-directed RNA polymerase subunit B, DNA-direct polymerase subunit A', DNA-directed...; transcription, fusion protein, chimera protein, multiprotein; 3.30A {Pyrococcus furiosus}
Probab=99.06 E-value=4.8e-11 Score=139.82 Aligned_cols=62 Identities=29% Similarity=0.592 Sum_probs=54.8
Q ss_pred ccceecccccCCccchheeeecCCcccCCccccccCCCCCcccccchHhHHHHHHHHHhcCCcEEEEEe
Q 001050 1103 SYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171 (1173)
Q Consensus 1103 ~~~~~vc~~cg~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~iPy~~k~L~~EL~sm~i~~~l~~~ 1171 (1173)
+|+++||..||+++. .+.+.+.++|+.|++++++..|.||||||||+|||+||||.++|.++
T Consensus 2 k~~~~VC~~CG~~~~-------~~~~~~~~~C~~C~~~~~i~~v~iPYa~KlL~qEL~smnI~~rl~~~ 63 (436)
T 3qqc_A 2 KTEVWVCENCGHIAL-------EDKRRRRVYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKLNLS 63 (436)
T ss_dssp CEEEEEETTTCCBCE-------EETTTTEEECTTTCCSSSEEEEEECHHHHHHHHHHHHTTBCCEEEEE
T ss_pred ceEEEEeCCCCceee-------eccccCccCCCCCCCCCeEEEEEcChHHHHHHHHHHhCCeeceeecc
Confidence 578999999999973 33344568999999999999999999999999999999999999876
No 9
>3lti_A DNA-directed RNA polymerase subunit beta; BBM2, nucleotidyltransferase, transcription, transferase; HET: MLY MSE; 1.60A {Escherichia coli} PDB: 3e7h_A
Probab=98.75 E-value=3.1e-08 Score=109.25 Aligned_cols=67 Identities=10% Similarity=0.084 Sum_probs=52.4
Q ss_pred eccceEEEec--C------CceEEEEEeecCCceEEEEEEecCccccccCCEEEEEEeeccccccHhhHHHHhcCCChHH
Q 001050 211 ICLKRLWVSN--S------MGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVLSVYFLSTEIPIWILFFALGVSSDKE 282 (1173)
Q Consensus 211 ~spnr~~i~~--~------~~~~a~irS~~~~~~~~i~~~~~~~~~~~~~~~i~v~i~~~k~~IPl~illrALG~~sD~e 282 (1173)
+|||.+|... + ..|.|.+++. +|.|+.++. +.++.+|+++++ ++++|+++||||||+ +++|
T Consensus 4 ~SPGv~f~~~~~~ths~g~~~y~~~iIP~---RGsWlefe~------d~~d~~~vrIdr-~rK~p~t~lLrAlG~-~~ed 72 (296)
T 3lti_A 4 MSPGVFFDSDKGKTHSSGKVLYNARIIPY---RGSWLDFEF------DPKDNLFVRIDR-RRKLPATIILRALNY-TTEQ 72 (296)
T ss_dssp CCCEEEEEEC---------CCEEEEEECS---BSCCEEEEE------CTTSCEEEEETT-CCCEETHHHHHHTTC-CHHH
T ss_pred CCCEEEEecccCCcCCCCcEEEEEEEecC---CCceEEEEE------cCCCeEEEEEcC-cccchHHHHHHHcCC-ChHH
Confidence 6888777632 1 1588988744 668888863 347899999998 569999999999999 6789
Q ss_pred HHHHhc
Q 001050 283 IVNLID 288 (1173)
Q Consensus 283 I~~~i~ 288 (1173)
|++.+.
T Consensus 73 IL~~Fy 78 (296)
T 3lti_A 73 ILDLFF 78 (296)
T ss_dssp HHHHHC
T ss_pred HHHhcc
Confidence 999883
No 10
>3mlq_A DNA-directed RNA polymerase subunit beta; tudor, transferase-transcription complex; 2.91A {Thermus aquaticus}
Probab=96.22 E-value=0.0014 Score=68.39 Aligned_cols=61 Identities=16% Similarity=0.227 Sum_probs=53.5
Q ss_pred ccCcEEeehhhhHHHHHHHHHHHHHHHHHHHhhhcccCCcccccccccccccchhhcccccccc
Q 001050 384 FRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYYLDASILTNGLSRAFST 447 (1173)
Q Consensus 384 l~nkRv~l~G~Ll~~lfr~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~i~~~~It~~i~~~~sT 447 (1173)
+-+|+.+++|+||+..++.+|.++.+.+|++|.... ...+ ++..++|.++++..|+.||.|
T Consensus 121 IVsQe~r~~gell~~q~r~gl~r~ek~~~e~~~~~~--~~~~-~~~~l~n~kp~~~~ik~ff~s 181 (188)
T 3mlq_A 121 IVSQGGRTVGELMADQFRVGLARLARGVRERMVMGS--PDTL-TPAKLVNSRPLEAALREFFSR 181 (188)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHSC--GGGC-CHHHHCCCHHHHHHHHHHHHT
T ss_pred EEEeecccCCeeeEEehhhHHHHHHHHHHhhhcccc--cccc-CcccchhhHHHHHHHHHhhcc
Confidence 567889999999999999999999999999997643 2345 688999999999999999974
No 11
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=35.38 E-value=16 Score=38.15 Aligned_cols=29 Identities=28% Similarity=0.568 Sum_probs=20.8
Q ss_pred CccceecccccCCccchheeeecCCcccCCccccccCCC
Q 001050 1102 DSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSG 1140 (1173)
Q Consensus 1102 D~~~~~vc~~cg~~~~~~~~~~~~~~~~~~~~c~~c~~~ 1140 (1173)
|....|+|..||-+. .+ ...+.|+.|+..
T Consensus 167 ~~~~~~~C~~CG~i~--------~g--~~p~~CP~C~~~ 195 (202)
T 1yuz_A 167 DDDKFHLCPICGYIH--------KG--EDFEKCPICFRP 195 (202)
T ss_dssp CSCCEEECSSSCCEE--------ES--SCCSBCTTTCCB
T ss_pred CCCcEEEECCCCCEE--------cC--cCCCCCCCCCCC
Confidence 556789999999874 12 223689999864
No 12
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=29.91 E-value=9.3 Score=33.29 Aligned_cols=31 Identities=16% Similarity=0.456 Sum_probs=19.6
Q ss_pred cceecccccCCccchheeeecCCcccCCccccccCCCCCc
Q 001050 1104 YQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDI 1143 (1173)
Q Consensus 1104 ~~~~vc~~cg~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~ 1143 (1173)
|.+..|+ ||.+. +......+..|+ |+..-++
T Consensus 2 Y~vv~C~-C~~~~-------~~~~~~kT~~C~-CG~~~~~ 32 (71)
T 1gh9_A 2 YIIFRCD-CGRAL-------YSREGAKTRKCV-CGRTVNV 32 (71)
T ss_dssp EEEEEET-TSCCE-------EEETTCSEEEET-TTEEEEC
T ss_pred eEEEECC-CCCEE-------EEcCCCcEEECC-CCCeeee
Confidence 5678899 99875 222233455798 9864333
No 13
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=24.52 E-value=39 Score=34.30 Aligned_cols=26 Identities=27% Similarity=0.699 Sum_probs=18.0
Q ss_pred ceecccccCCccchheeeecCCcccCCccccccCCC
Q 001050 1105 QMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSG 1140 (1173)
Q Consensus 1105 ~~~vc~~cg~~~~~~~~~~~~~~~~~~~~c~~c~~~ 1140 (1173)
..|+|.+||-+.. . .. ...|+.|+..
T Consensus 137 ~~~~C~~CG~i~~-------~--~~-p~~CP~Cg~~ 162 (170)
T 3pwf_A 137 KVYICPICGYTAV-------D--EA-PEYCPVCGAP 162 (170)
T ss_dssp CEEECTTTCCEEE-------S--CC-CSBCTTTCCB
T ss_pred CeeEeCCCCCeeC-------C--CC-CCCCCCCCCC
Confidence 5799999998751 1 11 2389999853
No 14
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=20.90 E-value=24 Score=36.52 Aligned_cols=30 Identities=23% Similarity=0.535 Sum_probs=19.3
Q ss_pred CccceecccccCCccchheeeecCCcccCCccccccCCC
Q 001050 1102 DSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSG 1140 (1173)
Q Consensus 1102 D~~~~~vc~~cg~~~~~~~~~~~~~~~~~~~~c~~c~~~ 1140 (1173)
|....|+|..||-+.. +... ...|+.|+..
T Consensus 151 ~~~~~~~C~~CG~~~~--------g~~~-p~~CP~C~~~ 180 (191)
T 1lko_A 151 EQATKWRCRNCGYVHE--------GTGA-PELCPACAHP 180 (191)
T ss_dssp EEEEEEEETTTCCEEE--------EEEC-CSBCTTTCCB
T ss_pred CCCceEEECCCCCEee--------CCCC-CCCCCCCcCC
Confidence 3344899999998741 1111 1289999864
Done!