RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 001050
(1173 letters)
>d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 1207
Score = 787 bits (2032), Expect = 0.0
Identities = 400/1217 (32%), Positives = 610/1217 (50%), Gaps = 110/1217 (9%)
Query: 32 SFFNEYGLVSHQINSYNEFIKNGLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMRFGQV 91
+FF E GLVS Q++S+N+F+ LQ I+E + + + R + FG++
Sbjct: 19 AFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTESDNISRKYEISFGKI 78
Query: 92 TLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTGREQY 151
+ KP +G H ++P+ ARL+N+TYSS + V V+ + Y V + K E
Sbjct: 79 YVTKPMVNESDG-VTHALYPQEARLRNLTYSSGLFVDVKKRTYEAIDVPGRELKY--ELI 135
Query: 152 IQKEVLSDETTNIIIGRIPVMVKSDLCWMKG------VEKGDCDFDHGGYFIIKGAEKVF 205
++ E+ + IGR+P+M++S C++ + +C FD GGYFII G+EKV
Sbjct: 136 AEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFIINGSEKVL 195
Query: 206 VAQEQICLKRLWV-----SNSMGWTVAYKSENKRNRLIVRLVDMSKFEDIKGGEKVL--S 258
+AQE+ + V + + +S ++ + + + + + + +
Sbjct: 196 IAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSARTIKAT 255
Query: 259 VYFLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGR 318
+ ++ +IPI I+F ALG+ D EI+ I + D +L +L + D D
Sbjct: 256 LPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFVIQDR----E 311
Query: 319 NALKYVDKLIKGTTFPPG---ESTEECMNTYLFPSLHGTK----QKARFLGYMVKCLLQA 371
AL ++ + + ++ + P + + +KA FLGYM+ LL
Sbjct: 312 TALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLC 371
Query: 372 YSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRTVRPIEYY 431
R+ D+RD F KRL+LAG LL + K K + + +QR +
Sbjct: 372 ALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTVEEAHDFNMKLAI 431
Query: 432 LDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRRTRQQVQYTGK 491
+A +T+GL A +TG W K +G+ L R TL LRRT + GK
Sbjct: 432 -NAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGK 490
Query: 492 VGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST-SILEPIFEQLFNSGMEKLA 550
+ R H +HWG +C TP+G+ CGLVKNL + +S + PI L GME L
Sbjct: 491 LAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEWGMEPLE 550
Query: 551 DDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIKRDELQSEVRIF 610
D + +VFV+G W GV ++ + LR RR+ ++ +V + RD + E++IF
Sbjct: 551 DYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINPEVSMIRDIREKELKIF 610
Query: 611 MDAGRILRPLLVVENM------------GKIKSL-------------EGKNYTFQALLDH 645
DAGR+ RPL +VE+ G I L + + YT+ +LL+
Sbjct: 611 TDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEYQDIEGGFEDVEEYTWSSLLNE 670
Query: 646 GIIELVGTEEEEDCCTAWGIKYL----------------LKDIEDKKPIKFTHCELDMSF 689
G++E + EEEE A + L + FTHCE+ S
Sbjct: 671 GLVEYIDAEEEESILIAMQPEDLEPAEANEENDLDVDPAKRIRVSHHATTFTHCEIHPSM 730
Query: 690 LLGLSCGIIPFANHDHARRVLYQSQKHSSQAIGFPTTNPSIRVDTLSHQLFYPQRPLFRT 749
+LG++ IIPF +H+ + R YQS QA+G TN ++R+DT+++ L+YPQ+PL T
Sbjct: 731 ILGVAASIIPFPDHNQSPRNTYQSA-MGKQAMGVFLTNYNVRMDTMANILYYPQKPLGTT 789
Query: 750 MISDCLGKPGYGHNHILPRPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEH 809
+ L LP GQNAIVA+ + GYNQEDS++MN++S++RG+FRS
Sbjct: 790 RAMEYL------KFRELP-----AGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLF 838
Query: 810 IRSYKAEVDNKEMQVKRRSSDDMVNFGKIQSKIGRVDSLDDDGFPFIGANLQSGDIVIGK 869
RSY + M + + ++ K G D LDDDG G + D++IGK
Sbjct: 839 FRSYMDQEKKYGMSITETF-EKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVIIGK 897
Query: 870 YADSGADH---------------SIKLKHTERGMVQKVVLSSNDDGKNFSVVSLRQVRSP 914
D S L+ TE G+V +V++++N DG F V +R + P
Sbjct: 898 TTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKIP 957
Query: 915 CLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKG 974
+GDKF+S HGQKG +G +E+ PFT +GIVPD++INPHA PSR T L+E L K
Sbjct: 958 QIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKV 1017
Query: 975 IAALGKGICSGLKRYATPFATPSVDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIG 1034
A G + A+PF +V+ I++ L G+ G E +Y+G TG+ + + IF G
Sbjct: 1018 AALSGN------EGDASPFTDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFG 1071
Query: 1035 PTFYQRLIHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLH 1094
PT+YQRL HM +DK+ R GP+ LTRQPV R R GG++FGEMERDC+IAHGAA+ L
Sbjct: 1072 PTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLK 1131
Query: 1095 ERLFTLSDSYQMHICRKCKNVANVIQRVVGGGRKVRGPYCRICDSGDDIVKANVPYGAKL 1154
ERL SD++++HIC C + + C+ CD+ DI + ++PY AKL
Sbjct: 1132 ERLMEASDAFRVHICGICGLMTVI------AKLNHNQFECKGCDNKIDIYQIHIPYAAKL 1185
Query: 1155 LCQELFSMGITLKFDTE 1171
L QEL +M IT + T+
Sbjct: 1186 LFQELMAMNITPRLYTD 1202
>d1smyc_ e.29.1.1 (C:) RNA-polymerase beta {Thermus thermophilus
[TaxId: 274]}
Length = 1119
Score = 500 bits (1288), Expect = e-158
Identities = 243/1246 (19%), Positives = 419/1246 (33%), Gaps = 270/1246 (21%)
Query: 38 GLVSHQINSYNEFIKN----------GLQKAFDSFGETIVEPGYDPSKKGEGEWRYASMR 87
L Q+ SY ++ G+Q AF P + K G +
Sbjct: 17 PLTEIQVESYRRALQADVPPEKRENVGIQAAFRE-----TFPIEEEDKGKGG----LVLD 67
Query: 88 FGQVTLDKPSFFAGNGGDEHDMFPRHARLQNMTYSSRMKVKVQFQVYTQKRVTSDKFKTG 147
F + L +P F R +++TY + + ++Q
Sbjct: 68 FLEYRLGEPPFP-----------QDECREKDLTYQAPLYARLQ----------------- 99
Query: 148 REQYIQKEVLSDETTNIIIGRIPVMVKSDLCWMKGVEKGDCDFDHGGYFIIKGAEKVFVA 207
I K+ + + +G IP+M + G FII GA++V V+
Sbjct: 100 ---LIHKDTGLIKEDEVFLGHIPLMTED------------------GSFIINGADRVIVS 138
Query: 208 QEQICLKRLWVSNSMGWTVAYKSENKRNRLIVRLVDMS------KFE-DIKGGEKVLSVY 260
Q + + R I ++ + E + G V+S+
Sbjct: 139 QIHRSPGVYFT----------PDPARPGRYIASIIPLPKRGPWIDLEVEPNG---VVSMK 185
Query: 261 FLSTEIPIWILFFALGVSSDKEIVNLIDFTCEDCSILNILFASIHDADNKCDEFRKGR-- 318
+ P+ +L LG + L + +++ ++ + F R
Sbjct: 186 VNKRKFPLVLLLRVLGYDQETLARELGAYGELVQGLMDESVFAMRPEEALIRLFTLLRPG 245
Query: 319 ------NALKYVDKLIKGTTFP-PGESTEECMNTYLFPSL---------HGTKQKARFLG 362
A+ YV LI GE+ L L G + FL
Sbjct: 246 DPPKRDKAVAYVYGLIADPRRYDLGEAGRYKAEEKLGIRLSGRTLARFEDGEFKDEVFLP 305
Query: 363 YMVKCLLQ-AYSGRRKCDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYG 421
+ A + D+ D N+R+ GEL+ + +V +A + + +R L G
Sbjct: 306 TLRYLFALTAGVPGHEVDDIDHLGNRRIRTVGELMTDQFRVGLARLARGV---RERMLMG 362
Query: 422 DRTVRPIEYYLDASILTNGLSRAFSTGAWSHPFKRTERISGIVANLGRANPLQTLVDLRR 481
+++ L + FS S T +S +L + L
Sbjct: 363 SEDSLTPAKLVNSRPLEAAIREFFSRSQLSQFKDETNPLS----SLRHKRRISALGPGGL 418
Query: 482 TRQQVQYTGKVGDARYPHPSHWGKICFLSTPDGENCGLVKNLGVTGLVST--SILEPIFE 539
TR++ + D R H +H+G+IC + TP+G N GL+ +L V I P
Sbjct: 419 TRERAGF-----DVRDVHRTHYGRICPVETPEGANIGLITSLAAYARVDELGFIRTPYRR 473
Query: 540 QLFNSGMEKLADDASYSLGGKFKVFVDGDWIGVCKDSLSFVSELRRKRRRKELPTQVEIK 599
+ +++ + + + +E RR+ E +
Sbjct: 474 VVGGVVTDEVV-----YMTATEEDRYTIAQANTPLEGNRIAAERVVARRKGEPVIVSPEE 528
Query: 600 RDELQSEVRIFMDAGRILRPLLVVENMGKIKSLEGKNYTFQAL-LDHGIIELVGTEEEED 658
+ + + L P L ++ + +L G N QA+ L +V T EE
Sbjct: 529 VEFMDVSPKQVFSVNTNLIPFLEHDDANR--ALMGSNMQTQAVPLIRAQAPVVMTGLEER 586
Query: 659 CCTAWGIKYLLKDIEDKKPIKFTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSQKHSS 718
+ ++ + + + + ++ + R +
Sbjct: 587 VVRDSLAA-----LYAEEDGEVAKVDGNRIVVRYEDGRLVEYPLRRFYRSNQGTALDQ-- 639
Query: 719 QAIGFPTTNPSIRVDTLSHQLFYPQRPLFRTMISDCLGKPGYGHNHILPRPELYNGQNAI 778
R + Q L S+ GQN +
Sbjct: 640 ------------RPRVVVGQRVRKGDLLADGPASENGFLA--------------LGQNVL 673
Query: 779 VAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKEMQVKRRSSDDMVNFGKI 838
VA+ GYN ED++V++ L+R + S HI Y+ E + ++ +R + D
Sbjct: 674 VAIMPFDGYNFEDAIVISEELLKRDFYTSIHIERYEIEARDTKLGPERITRDIP------ 727
Query: 839 QSKIGRVDSLDDDGFPFIGANLQSGDIVIGKYADSGAD---------------------- 876
+ LD++G IGA ++ GDI++G+ + G
Sbjct: 728 HLSEAALRDLDEEGVVRIGAEVKPGDILVGRTSFKGESEPTPEERLLRSIFGEKARDVKD 787
Query: 877 HSIKLKHTERGMVQKVV--------LSSNDDGKNFSVVSLRQVRSPCLGDKFSSMHGQKG 928
S+++ E G+V + V + + V + Q R +GDK ++ HG KG
Sbjct: 788 TSLRVPPGEGGIVVRTVRLRRGDPGVELKPGVREVVRVYVAQKRKLQVGDKLANRHGNKG 847
Query: 929 VLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIAALGKGICSGLKR 988
V+ + E+ P G D+++NP PSR GQ+LE LG LG+
Sbjct: 848 VVAKILPVEDMPHLPDGTPVDVILNPLGVPSRMNLGQILETHLGLAGYFLGQRY------ 901
Query: 989 YATPFATPSVDAITEQLHRA---------------------------------------- 1008
+ F I E L +A
Sbjct: 902 ISPIFDGAKEPEIKELLAQAFEVYFGKRKGEGFGVDKREVEVLRRAEKLGLVTPGKTPEE 961
Query: 1009 ---GFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIHMSEDKVKFRNTGPVHPLTRQPV 1065
G LYDGRTGE + I +G F +L HM EDK+ R+TGP +T+QP+
Sbjct: 962 QLKELFLQGKVVLYDGRTGEPIEGPIVVGQMFIMKLYHMVEDKMHARSTGPYSLITQQPL 1021
Query: 1066 ADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSYQMHICRKCKNVANVIQRVVGG 1125
+ +FGG +FGEME L A+GAA L E L SD +
Sbjct: 1022 GGKAQFGGQRFGEMEVWALEAYGAAHTLQEMLTLKSDDIEGRNA---------------- 1065
Query: 1126 GRKVRGPYCRICDSGDDIVKANVPYGAKLLCQELFSMGITLKFDTE 1171
Y I G+D+ + +VP ++L +EL ++ + ++ E
Sbjct: 1066 ------AYEAIIK-GEDVPEPSVPESFRVLVKELQALALDVQTLDE 1104
>d1xx6a2 g.39.1.14 (A:143-191) Thymidine kinase, TK1, C-terminal
domain {Clostridium acetobutylicum [TaxId: 1488]}
Length = 49
Score = 25.5 bits (56), Expect = 5.0
Identities = 11/43 (25%), Positives = 13/43 (30%), Gaps = 13/43 (30%)
Query: 1108 ICRKCKNVANVIQRVVGGGRKVRG-------------PYCRIC 1137
IC C N A QR++ G CR C
Sbjct: 2 ICVVCGNPATRTQRLINGKPAFYDDPVVLIGAMESYEARCRKC 44
>d1v29b_ b.34.4.4 (B:) Cobalt-containing nitrile hydratase {Bacillus
smithii [TaxId: 1479]}
Length = 229
Score = 28.0 bits (62), Expect = 6.3
Identities = 6/46 (13%), Positives = 14/46 (30%), Gaps = 2/46 (4%)
Query: 998 VDAITEQLHRAGFSKWGTERLYDGRTGEMVRSLIFIGPTFYQRLIH 1043
+ G + G E +R + ++ ++Y I
Sbjct: 35 TFGLVAGCMAQGLGMKAFDEFRIGI--EKMRPVDYLTSSYYGHWIA 78
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.418
Gapped
Lambda K H
0.267 0.0595 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,467,473
Number of extensions: 219127
Number of successful extensions: 469
Number of sequences better than 10.0: 1
Number of HSP's gapped: 447
Number of HSP's successfully gapped: 6
Length of query: 1173
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 1078
Effective length of database: 1,103,246
Effective search space: 1189299188
Effective search space used: 1189299188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.4 bits)