Query 001051
Match_columns 1173
No_of_seqs 343 out of 2372
Neff 5.8
Searched_HMMs 46136
Date Thu Mar 28 14:28:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001051.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001051hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK03562 glutathione-regulated 100.0 1E-74 2.2E-79 709.0 64.1 556 601-1170 5-561 (621)
2 PRK03659 glutathione-regulated 100.0 1.4E-74 2.9E-79 706.5 64.5 559 598-1170 2-561 (601)
3 PRK10669 putative cation:proto 100.0 4.3E-68 9.3E-73 645.9 61.5 541 600-1142 5-550 (558)
4 PLN03159 cation/H(+) antiporte 100.0 2.1E-42 4.6E-47 434.9 42.5 411 602-1029 44-479 (832)
5 COG0475 KefB Kef-type K+ trans 100.0 1.1E-41 2.3E-46 398.1 43.8 379 598-989 3-386 (397)
6 COG4651 RosB Kef-type K+ trans 100.0 1.3E-39 2.8E-44 351.1 32.8 392 599-992 3-396 (408)
7 PRK05326 potassium/proton anti 100.0 5.5E-38 1.2E-42 382.6 38.4 373 601-982 6-385 (562)
8 PF00999 Na_H_Exchanger: Sodiu 100.0 3.8E-37 8.3E-42 357.1 -2.3 363 609-982 4-376 (380)
9 TIGR00932 2a37 transporter, mo 100.0 3.8E-32 8.2E-37 302.8 33.1 272 611-890 2-273 (273)
10 TIGR00844 c_cpa1 na(+)/h(+) an 100.0 1.6E-30 3.6E-35 317.0 42.2 348 603-956 15-386 (810)
11 TIGR00831 a_cpa1 Na+/H+ antipo 100.0 2.5E-28 5.5E-33 295.2 40.5 358 607-977 4-397 (525)
12 KOG1650 Predicted K+/H+-antipo 100.0 1E-29 2.2E-34 316.6 26.9 416 601-1030 23-466 (769)
13 COG0025 NhaP NhaP-type Na+/H+ 100.0 4.4E-27 9.6E-32 277.6 42.9 370 601-979 6-397 (429)
14 COG3263 NhaP-type Na+/H+ and K 100.0 9.5E-28 2.1E-32 270.1 30.6 365 602-978 7-379 (574)
15 TIGR00840 b_cpa1 sodium/hydrog 100.0 8.7E-26 1.9E-30 273.8 38.1 367 604-976 10-404 (559)
16 PRK10537 voltage-gated potassi 99.9 4E-20 8.6E-25 215.9 28.3 131 1009-1141 240-370 (393)
17 KOG1965 Sodium/hydrogen exchan 99.8 5.9E-19 1.3E-23 208.1 27.2 368 601-975 35-441 (575)
18 PF02254 TrkA_N: TrkA-N domain 99.8 8.1E-19 1.7E-23 170.6 11.1 116 1012-1127 1-116 (116)
19 KOG4505 Na+/H+ antiporter [Ino 99.7 1.1E-14 2.4E-19 160.5 27.5 332 613-952 26-382 (467)
20 COG0569 TrkA K+ transport syst 99.7 1.8E-16 3.8E-21 173.0 12.5 133 1011-1143 2-136 (225)
21 PRK14853 nhaA pH-dependent sod 99.6 4.7E-13 1E-17 156.3 35.4 297 651-981 61-392 (423)
22 PRK09496 trkA potassium transp 99.5 4.9E-14 1.1E-18 167.9 12.6 133 1009-1142 231-365 (453)
23 COG1226 Kch Kef-type K+ transp 99.4 2.7E-12 5.9E-17 133.7 16.6 163 1005-1167 17-180 (212)
24 PRK09496 trkA potassium transp 99.4 4.6E-13 1E-17 159.6 11.5 132 1011-1142 2-139 (453)
25 KOG1966 Sodium/hydrogen exchan 99.4 4.2E-13 9.1E-18 158.2 8.5 337 604-949 42-405 (670)
26 TIGR00773 NhaA Na+/H+ antiport 99.3 3.8E-10 8.3E-15 130.0 25.8 268 651-953 51-344 (373)
27 PRK14856 nhaA pH-dependent sod 99.2 2.8E-09 6.1E-14 124.7 25.2 268 651-953 67-398 (438)
28 PRK14854 nhaA pH-dependent sod 99.1 3.9E-08 8.4E-13 113.3 26.2 269 651-953 55-348 (383)
29 PRK09560 nhaA pH-dependent sod 99.0 4.1E-08 8.9E-13 113.6 24.9 267 651-952 58-352 (389)
30 PRK09561 nhaA pH-dependent sod 99.0 6.5E-08 1.4E-12 111.8 24.6 268 651-953 58-351 (388)
31 PRK14855 nhaA pH-dependent sod 98.9 2.5E-07 5.4E-12 108.3 24.9 265 651-953 62-383 (423)
32 PF06965 Na_H_antiport_1: Na+/ 98.9 1.8E-08 3.8E-13 116.4 13.4 269 651-954 54-352 (378)
33 COG3004 NhaA Na+/H+ antiporter 98.7 3.5E-06 7.6E-11 94.3 25.8 265 653-954 63-355 (390)
34 PF05684 DUF819: Protein of un 98.2 0.003 6.6E-08 74.7 33.7 97 847-946 243-339 (378)
35 PRK12460 2-keto-3-deoxyglucona 98.2 0.00031 6.7E-09 79.9 23.0 134 846-983 168-303 (312)
36 PF03812 KdgT: 2-keto-3-deoxyg 98.0 0.0011 2.3E-08 75.3 22.7 275 629-983 15-309 (314)
37 PF03616 Glt_symporter: Sodium 97.8 0.017 3.8E-07 68.2 30.7 90 842-933 245-340 (368)
38 TIGR00698 conserved hypothetic 97.6 0.14 3.1E-06 59.8 32.6 105 624-732 29-139 (335)
39 TIGR00210 gltS sodium--glutama 97.6 0.1 2.2E-06 62.4 31.9 90 842-932 243-337 (398)
40 PF03601 Cons_hypoth698: Conse 97.6 0.037 8E-07 63.8 26.9 107 623-733 23-134 (305)
41 COG3180 AbrB Putative ammonia 97.5 0.25 5.4E-06 57.7 33.3 108 603-716 8-121 (352)
42 COG0786 GltS Na+/glutamate sym 97.5 0.028 6E-07 65.8 24.2 97 836-932 235-341 (404)
43 PRK06719 precorrin-2 dehydroge 97.5 0.00015 3.2E-09 75.5 5.4 82 1009-1097 13-94 (157)
44 COG2855 Predicted membrane pro 97.3 0.26 5.6E-06 57.1 29.2 120 607-732 17-142 (334)
45 PF05145 AmoA: Putative ammoni 97.2 0.28 6.1E-06 57.0 29.1 147 829-983 161-313 (318)
46 PF13593 DUF4137: SBF-like CPA 97.0 0.49 1.1E-05 55.0 28.7 106 653-762 29-139 (313)
47 TIGR00793 kdgT 2-keto-3-deoxyg 97.0 0.011 2.5E-07 66.9 14.6 131 847-983 174-309 (314)
48 COG0385 Predicted Na+-dependen 97.0 0.27 5.9E-06 56.8 25.5 103 652-762 35-143 (319)
49 PRK06718 precorrin-2 dehydroge 96.9 0.0033 7.2E-08 68.2 8.8 83 1009-1096 10-93 (202)
50 cd01075 NAD_bind_Leu_Phe_Val_D 96.7 0.0056 1.2E-07 66.3 8.8 108 1010-1131 29-141 (200)
51 PRK11281 hypothetical protein; 96.6 4.8 0.0001 54.1 47.0 20 224-243 162-181 (1113)
52 PRK04148 hypothetical protein; 96.6 0.0074 1.6E-07 61.4 7.9 90 1010-1103 18-107 (134)
53 PRK03562 glutathione-regulated 96.5 0.072 1.6E-06 67.2 17.8 127 613-742 228-356 (621)
54 COG0679 Predicted permeases [G 96.5 1.9 4.1E-05 49.9 27.9 135 844-981 167-305 (311)
55 PRK03659 glutathione-regulated 96.4 0.087 1.9E-06 66.3 18.0 124 614-740 226-351 (601)
56 PRK06522 2-dehydropantoate 2-r 96.4 0.017 3.6E-07 65.6 10.3 106 1011-1118 2-111 (304)
57 TIGR00832 acr3 arsenical-resis 96.3 2 4.3E-05 50.3 27.3 99 658-762 46-149 (328)
58 PF00670 AdoHcyase_NAD: S-aden 96.3 0.0071 1.5E-07 63.3 5.9 101 1009-1121 23-126 (162)
59 TIGR00841 bass bile acid trans 96.1 3.7 7.9E-05 47.1 29.7 98 659-762 12-113 (286)
60 PF03601 Cons_hypoth698: Conse 96.1 0.11 2.5E-06 59.9 15.2 154 829-984 7-170 (305)
61 TIGR01470 cysG_Nterm siroheme 96.0 0.014 3.1E-07 63.4 6.9 83 1010-1098 10-94 (205)
62 PLN03159 cation/H(+) antiporte 95.9 0.14 3E-06 66.7 16.8 85 655-740 322-410 (832)
63 TIGR00932 2a37 transporter, mo 95.9 0.15 3.3E-06 57.4 15.0 109 832-940 4-114 (273)
64 PRK10929 putative mechanosensi 95.8 12 0.00026 50.5 46.2 17 290-306 216-232 (1109)
65 COG3493 CitS Na+/citrate sympo 95.7 6.1 0.00013 46.6 30.7 162 601-768 46-229 (438)
66 PF03446 NAD_binding_2: NAD bi 95.6 0.042 9.1E-07 57.3 8.5 108 1011-1127 3-119 (163)
67 PRK05274 2-keto-3-deoxyglucona 95.6 0.28 6.1E-06 57.2 16.0 130 848-983 177-311 (326)
68 TIGR00946 2a69 he Auxin Efflux 95.6 4.9 0.00011 46.6 26.0 133 845-981 182-318 (321)
69 TIGR02853 spore_dpaA dipicolin 95.6 0.082 1.8E-06 60.5 11.1 123 1010-1141 152-283 (287)
70 PRK10669 putative cation:proto 95.5 0.23 5E-06 61.9 16.0 111 829-939 15-126 (558)
71 TIGR00783 ccs citrate carrier 95.5 3.5 7.5E-05 48.5 24.0 114 843-956 203-325 (347)
72 cd05211 NAD_bind_Glu_Leu_Phe_V 95.4 0.04 8.6E-07 60.6 7.7 113 1009-1131 23-152 (217)
73 TIGR00518 alaDH alanine dehydr 95.4 0.047 1E-06 64.7 8.6 99 1010-1109 168-269 (370)
74 CHL00194 ycf39 Ycf39; Provisio 95.3 0.063 1.4E-06 61.7 9.2 70 1012-1082 3-73 (317)
75 COG0798 ACR3 Arsenite efflux p 95.3 8.2 0.00018 45.1 28.0 137 627-768 18-163 (342)
76 PF13460 NAD_binding_10: NADH( 95.2 0.048 1E-06 56.9 7.4 90 1012-1105 1-95 (183)
77 PF03956 DUF340: Membrane prot 95.2 0.17 3.7E-06 54.6 11.6 128 630-765 2-134 (191)
78 PRK03818 putative transporter; 95.1 0.41 8.8E-06 59.7 16.1 127 601-731 6-138 (552)
79 COG2855 Predicted membrane pro 95.1 0.2 4.3E-06 58.0 12.2 113 830-942 23-136 (334)
80 PF03390 2HCT: 2-hydroxycarbox 95.1 11 0.00023 45.5 30.9 317 602-956 30-392 (414)
81 COG0475 KefB Kef-type K+ trans 95.0 0.69 1.5E-05 55.4 17.0 117 607-725 225-342 (397)
82 TIGR03802 Asp_Ala_antiprt aspa 95.0 0.17 3.7E-06 63.2 12.3 130 601-737 10-144 (562)
83 TIGR03082 Gneg_AbrB_dup membra 94.9 0.39 8.4E-06 50.2 12.8 105 608-716 2-110 (156)
84 KOG0994 Extracellular matrix g 94.8 2.9 6.3E-05 54.5 21.9 53 260-312 1590-1642(1758)
85 TIGR00698 conserved hypothetic 94.8 0.44 9.6E-06 55.8 14.2 140 842-983 29-175 (335)
86 PF02558 ApbA: Ketopantoate re 94.7 0.034 7.3E-07 56.7 4.2 106 1012-1119 1-113 (151)
87 PRK05562 precorrin-2 dehydroge 94.7 0.18 4E-06 55.7 10.1 84 1009-1098 25-110 (223)
88 PF05368 NmrA: NmrA-like famil 94.7 0.13 2.7E-06 56.2 8.9 88 1012-1100 1-96 (233)
89 COG1748 LYS9 Saccharopine dehy 94.6 0.16 3.6E-06 60.2 10.2 119 1010-1132 2-128 (389)
90 PRK12921 2-dehydropantoate 2-r 94.5 0.19 4.2E-06 57.1 10.2 106 1011-1118 2-113 (305)
91 PRK05326 potassium/proton anti 94.4 0.69 1.5E-05 57.8 15.7 113 829-941 15-131 (562)
92 TIGR00831 a_cpa1 Na+/H+ antipo 94.4 0.47 1E-05 58.9 14.0 117 829-945 7-124 (525)
93 TIGR00210 gltS sodium--glutama 94.3 1.6 3.5E-05 52.3 17.8 157 606-763 224-391 (398)
94 PRK12490 6-phosphogluconate de 94.3 0.23 5.1E-06 56.9 10.5 108 1012-1125 3-117 (299)
95 TIGR00844 c_cpa1 na(+)/h(+) an 94.3 0.66 1.4E-05 59.5 15.2 110 833-942 27-145 (810)
96 TIGR00872 gnd_rel 6-phosphoglu 94.2 0.24 5.2E-06 56.9 10.4 110 1011-1127 2-118 (298)
97 KOG4673 Transcription factor T 94.1 4.4 9.5E-05 50.5 20.6 90 264-359 512-601 (961)
98 PRK09599 6-phosphogluconate de 94.1 0.32 6.8E-06 55.9 11.0 111 1011-1127 2-119 (301)
99 cd01065 NAD_bind_Shikimate_DH 94.0 0.17 3.6E-06 51.7 7.7 108 1009-1122 19-134 (155)
100 TIGR02964 xanthine_xdhC xanthi 94.0 0.22 4.8E-06 55.9 9.1 125 1009-1146 100-227 (246)
101 PRK04972 putative transporter; 93.9 0.69 1.5E-05 57.8 14.1 106 602-714 13-121 (558)
102 PRK12475 thiamine/molybdopteri 93.6 0.21 4.6E-06 58.5 8.5 88 1009-1098 24-141 (338)
103 PF05145 AmoA: Putative ammoni 93.6 2.5 5.4E-05 49.3 17.1 111 602-716 153-267 (318)
104 TIGR03082 Gneg_AbrB_dup membra 93.4 3.1 6.6E-05 43.5 15.9 117 830-952 5-127 (156)
105 PLN02494 adenosylhomocysteinas 93.4 0.19 4.1E-06 61.0 7.7 100 1009-1119 254-355 (477)
106 COG1893 ApbA Ketopantoate redu 93.3 0.32 7E-06 56.3 9.2 112 1011-1123 2-117 (307)
107 PF03977 OAD_beta: Na+-transpo 93.3 21 0.00045 41.8 28.3 119 608-729 6-137 (360)
108 PF03721 UDPG_MGDP_dh_N: UDP-g 93.2 0.17 3.7E-06 54.3 6.4 119 1011-1131 2-155 (185)
109 PF06826 Asp-Al_Ex: Predicted 93.2 2.6 5.7E-05 44.8 15.1 109 625-734 22-135 (169)
110 PRK05708 2-dehydropantoate 2-r 93.2 0.39 8.5E-06 55.3 9.8 113 1011-1125 4-123 (305)
111 TIGR01692 HIBADH 3-hydroxyisob 93.1 0.61 1.3E-05 53.2 11.0 105 1014-1127 1-115 (288)
112 KOG0994 Extracellular matrix g 93.1 4 8.6E-05 53.3 18.5 64 267-330 1583-1653(1758)
113 PF01758 SBF: Sodium Bile acid 92.9 7.6 0.00016 41.6 18.4 98 659-762 2-104 (187)
114 PRK08306 dipicolinate synthase 92.8 0.24 5.2E-06 57.0 7.3 108 1009-1125 152-261 (296)
115 PF03435 Saccharop_dh: Sacchar 92.8 0.2 4.4E-06 59.3 6.9 112 1012-1127 1-122 (386)
116 PTZ00075 Adenosylhomocysteinas 92.8 0.29 6.3E-06 59.5 8.2 101 1009-1120 254-356 (476)
117 PRK00094 gpsA NAD(P)H-dependen 92.8 0.26 5.5E-06 56.6 7.5 96 1011-1107 3-105 (325)
118 PF13241 NAD_binding_7: Putati 92.7 0.12 2.6E-06 50.0 3.9 79 1009-1098 7-85 (103)
119 TIGR00936 ahcY adenosylhomocys 92.7 0.25 5.5E-06 59.2 7.4 66 1009-1083 195-260 (406)
120 TIGR03802 Asp_Ala_antiprt aspa 92.7 3.7 8E-05 51.6 17.8 130 605-736 390-531 (562)
121 PLN00141 Tic62-NAD(P)-related 92.6 0.57 1.2E-05 51.9 9.7 75 1009-1083 17-95 (251)
122 PRK08229 2-dehydropantoate 2-r 92.6 0.39 8.4E-06 55.8 8.7 104 1011-1118 4-118 (341)
123 TIGR02168 SMC_prok_B chromosom 92.5 15 0.00033 49.4 24.7 13 152-164 709-721 (1179)
124 PLN02819 lysine-ketoglutarate 92.5 1.1 2.4E-05 59.4 13.5 122 1008-1133 568-709 (1042)
125 PRK04863 mukB cell division pr 92.5 3.8 8.3E-05 56.6 18.8 31 335-365 446-476 (1486)
126 TIGR01109 Na_pump_decarbB sodi 92.4 26 0.00057 40.8 23.9 115 610-727 6-135 (354)
127 PRK05993 short chain dehydroge 92.4 0.18 3.9E-06 56.5 5.5 72 1010-1081 5-84 (277)
128 PLN02688 pyrroline-5-carboxyla 92.4 0.6 1.3E-05 52.3 9.6 105 1012-1125 3-113 (266)
129 PRK05476 S-adenosyl-L-homocyst 92.4 0.2 4.3E-06 60.4 6.0 67 1009-1084 212-278 (425)
130 PRK08017 oxidoreductase; Provi 92.4 0.2 4.3E-06 55.0 5.6 59 1010-1068 3-62 (256)
131 PF03807 F420_oxidored: NADP o 92.3 0.29 6.4E-06 46.0 6.0 85 1012-1105 2-91 (96)
132 TIGR03649 ergot_EASG ergot alk 92.3 0.67 1.4E-05 52.1 9.9 116 1012-1131 2-139 (285)
133 TIGR01505 tartro_sem_red 2-hyd 92.3 0.67 1.5E-05 52.8 9.9 107 1012-1127 2-118 (291)
134 PRK11064 wecC UDP-N-acetyl-D-m 92.1 0.49 1.1E-05 57.0 9.0 73 1010-1084 4-86 (415)
135 TIGR00946 2a69 he Auxin Efflux 92.1 5.9 0.00013 45.9 17.5 114 620-736 176-290 (321)
136 TIGR03136 malonate_biotin Na+- 92.0 32 0.00069 40.8 25.6 122 605-729 23-174 (399)
137 cd05291 HicDH_like L-2-hydroxy 91.9 0.42 9.2E-06 55.1 7.9 129 1011-1147 2-162 (306)
138 COG1648 CysG Siroheme synthase 91.8 1 2.2E-05 49.5 10.2 83 1010-1098 13-97 (210)
139 PF10727 Rossmann-like: Rossma 91.8 0.23 4.9E-06 50.3 4.8 105 1008-1121 9-120 (127)
140 PRK11559 garR tartronate semia 91.8 1.1 2.3E-05 51.2 10.8 108 1011-1127 4-121 (296)
141 cd00401 AdoHcyase S-adenosyl-L 91.7 0.38 8.3E-06 57.8 7.3 67 1009-1084 202-268 (413)
142 PRK07417 arogenate dehydrogena 91.7 0.38 8.3E-06 54.6 7.0 68 1011-1085 2-69 (279)
143 TIGR01625 YidE_YbjL_dupl AspT/ 91.6 2.4 5.2E-05 44.5 12.2 106 629-736 24-138 (154)
144 PRK03818 putative transporter; 91.6 5 0.00011 50.3 17.2 128 604-733 372-514 (552)
145 COG2985 Predicted permease [Ge 91.6 3 6.6E-05 50.4 14.3 124 610-739 13-147 (544)
146 PRK14106 murD UDP-N-acetylmura 91.5 0.36 7.8E-06 58.3 6.9 74 1010-1089 6-84 (450)
147 PRK04972 putative transporter; 91.4 3.6 7.7E-05 51.6 15.5 132 603-736 383-526 (558)
148 TIGR02680 conserved hypothetic 91.3 17 0.00037 50.5 23.0 122 110-243 705-832 (1353)
149 COG2084 MmsB 3-hydroxyisobutyr 91.3 0.63 1.4E-05 53.3 8.1 108 1011-1127 2-120 (286)
150 PRK15178 Vi polysaccharide exp 91.2 9.8 0.00021 46.2 18.3 56 176-246 215-270 (434)
151 TIGR02169 SMC_prok_A chromosom 91.2 14 0.00031 49.8 22.2 47 269-315 295-341 (1164)
152 PTZ00142 6-phosphogluconate de 91.0 1.1 2.3E-05 55.0 10.3 112 1011-1127 3-126 (470)
153 PF03616 Glt_symporter: Sodium 90.9 8.2 0.00018 46.0 17.3 104 625-728 246-356 (368)
154 cd01078 NAD_bind_H4MPT_DH NADP 90.9 0.45 9.8E-06 50.9 6.3 76 1010-1086 29-110 (194)
155 COG1196 Smc Chromosome segrega 90.9 11 0.00024 51.5 20.6 23 42-64 45-71 (1163)
156 PRK06182 short chain dehydroge 90.9 0.37 8E-06 53.8 5.8 73 1010-1082 4-83 (273)
157 PRK14620 NAD(P)H-dependent gly 90.7 0.62 1.3E-05 54.0 7.6 100 1012-1112 3-111 (326)
158 PRK09260 3-hydroxybutyryl-CoA 90.7 0.38 8.3E-06 54.8 5.8 74 1011-1085 3-93 (288)
159 PRK15059 tartronate semialdehy 90.7 0.95 2.1E-05 52.0 9.0 106 1012-1127 3-118 (292)
160 TIGR03185 DNA_S_dndD DNA sulfu 90.4 25 0.00055 45.0 22.2 55 261-315 421-475 (650)
161 PRK15461 NADH-dependent gamma- 90.3 1.5 3.2E-05 50.4 10.2 108 1011-1127 3-120 (296)
162 KOG0996 Structural maintenance 90.3 17 0.00036 48.4 19.8 46 666-711 1175-1220(1293)
163 PF06008 Laminin_I: Laminin Do 90.2 14 0.0003 41.9 17.6 103 154-256 44-177 (264)
164 COG0786 GltS Na+/glutamate sym 90.2 7.1 0.00015 46.4 15.4 120 610-729 231-358 (404)
165 PRK06129 3-hydroxyacyl-CoA deh 90.1 1.1 2.5E-05 51.6 9.1 103 1011-1114 4-124 (308)
166 COG1196 Smc Chromosome segrega 90.1 12 0.00027 51.0 20.1 61 268-328 835-895 (1163)
167 TIGR03026 NDP-sugDHase nucleot 90.1 0.65 1.4E-05 55.7 7.3 74 1011-1085 2-88 (411)
168 PRK05225 ketol-acid reductoiso 90.1 0.15 3.2E-06 61.4 1.8 68 1009-1085 36-109 (487)
169 COG1023 Gnd Predicted 6-phosph 90.0 1.3 2.9E-05 49.2 8.8 109 1013-1126 4-118 (300)
170 PRK07688 thiamine/molybdopteri 90.0 0.98 2.1E-05 53.1 8.4 88 1009-1098 24-141 (339)
171 TIGR03466 HpnA hopanoid-associ 89.9 0.39 8.5E-06 54.5 5.0 69 1012-1081 3-72 (328)
172 PF07991 IlvN: Acetohydroxy ac 89.9 0.18 3.9E-06 53.0 2.0 66 1010-1084 5-71 (165)
173 cd05213 NAD_bind_Glutamyl_tRNA 89.8 0.86 1.9E-05 52.8 7.8 72 1009-1086 178-251 (311)
174 TIGR02169 SMC_prok_A chromosom 89.8 58 0.0013 44.1 26.1 18 1022-1039 1083-1103(1164)
175 COG0499 SAM1 S-adenosylhomocys 89.7 0.41 8.9E-06 55.8 4.9 67 1009-1084 209-275 (420)
176 PF01488 Shikimate_DH: Shikima 89.7 0.16 3.6E-06 51.4 1.6 74 1009-1086 12-88 (135)
177 PRK06249 2-dehydropantoate 2-r 89.6 2.1 4.6E-05 49.4 10.8 112 1011-1125 7-125 (313)
178 PF00261 Tropomyosin: Tropomyo 89.6 16 0.00036 40.7 17.3 168 150-325 59-226 (237)
179 PRK01438 murD UDP-N-acetylmura 89.6 0.83 1.8E-05 55.8 7.8 73 1009-1088 16-93 (480)
180 TIGR00873 gnd 6-phosphoglucona 89.3 1.9 4.1E-05 52.8 10.5 121 1012-1137 2-132 (467)
181 PLN00106 malate dehydrogenase 89.2 2.2 4.9E-05 49.8 10.6 139 1009-1148 18-184 (323)
182 PF13478 XdhC_C: XdhC Rossmann 88.9 0.27 5.9E-06 50.3 2.5 81 1012-1099 1-81 (136)
183 PLN02427 UDP-apiose/xylose syn 88.9 0.74 1.6E-05 54.4 6.5 70 1011-1081 16-94 (386)
184 PRK09291 short chain dehydroge 88.8 0.8 1.7E-05 50.2 6.3 73 1010-1082 3-82 (257)
185 PRK07502 cyclohexadienyl dehyd 88.6 1 2.2E-05 51.8 7.2 70 1010-1085 7-78 (307)
186 KOG1370 S-adenosylhomocysteine 88.5 1 2.2E-05 51.5 6.7 78 1009-1097 214-291 (434)
187 PRK06953 short chain dehydroge 88.5 1.2 2.7E-05 47.9 7.4 71 1012-1082 4-79 (222)
188 PRK15057 UDP-glucose 6-dehydro 88.5 2.8 6.1E-05 50.2 11.0 70 1012-1084 3-84 (388)
189 PF01210 NAD_Gly3P_dh_N: NAD-d 88.5 0.2 4.3E-06 52.1 1.2 71 1012-1086 2-82 (157)
190 PLN02350 phosphogluconate dehy 88.4 2.2 4.7E-05 52.7 10.1 114 1011-1127 8-132 (493)
191 PRK08507 prephenate dehydrogen 88.4 0.75 1.6E-05 52.0 5.9 87 1011-1107 2-90 (275)
192 KOG3826 Na+/H+ antiporter [Ino 88.4 0.37 8E-06 53.0 3.1 135 599-733 95-236 (252)
193 PLN02657 3,8-divinyl protochlo 88.3 1.5 3.3E-05 52.3 8.7 71 1011-1081 62-144 (390)
194 TIGR00783 ccs citrate carrier 88.3 5 0.00011 47.2 12.5 106 614-722 192-306 (347)
195 COG5374 Uncharacterized conser 88.1 0.95 2.1E-05 47.9 5.8 51 274-324 142-192 (192)
196 PRK14618 NAD(P)H-dependent gly 88.1 1.6 3.5E-05 50.6 8.6 93 1011-1108 6-105 (328)
197 PRK10637 cysG siroheme synthas 88.1 1 2.3E-05 54.9 7.2 84 1009-1098 12-97 (457)
198 PLN03209 translocon at the inn 88.0 2.5 5.4E-05 52.9 10.4 73 1010-1083 81-169 (576)
199 COG1346 LrgB Putative effector 88.0 24 0.00051 39.3 16.6 89 891-983 83-171 (230)
200 PRK05693 short chain dehydroge 87.9 0.77 1.7E-05 51.2 5.5 72 1011-1082 3-81 (274)
201 TIGR02680 conserved hypothetic 87.9 76 0.0016 44.3 25.2 38 269-306 348-385 (1353)
202 PRK06545 prephenate dehydrogen 87.7 0.9 2E-05 53.6 6.2 80 1011-1095 2-81 (359)
203 PRK07326 short chain dehydroge 87.6 0.82 1.8E-05 49.5 5.4 72 1010-1081 7-90 (237)
204 PRK12460 2-keto-3-deoxyglucona 87.5 6.8 0.00015 45.5 12.7 86 629-718 169-254 (312)
205 PRK11880 pyrroline-5-carboxyla 87.5 2.1 4.5E-05 48.1 8.6 66 1011-1084 4-73 (267)
206 PRK13403 ketol-acid reductoiso 87.3 1.5 3.2E-05 51.2 7.3 68 1010-1086 17-84 (335)
207 PF05701 WEMBL: Weak chloropla 87.1 42 0.00092 41.9 20.4 56 282-345 372-427 (522)
208 PLN02695 GDP-D-mannose-3',5'-e 86.7 2.4 5.2E-05 50.1 9.0 72 1009-1081 21-93 (370)
209 TIGR00465 ilvC ketol-acid redu 86.7 2 4.3E-05 50.1 8.0 66 1010-1084 4-70 (314)
210 PF00038 Filament: Intermediat 86.7 16 0.00034 42.2 15.4 154 150-310 98-251 (312)
211 PRK06130 3-hydroxybutyryl-CoA 86.7 2.5 5.4E-05 48.6 8.9 75 1010-1085 5-91 (311)
212 PRK12491 pyrroline-5-carboxyla 86.6 4.6 0.0001 46.0 10.8 66 1011-1084 4-74 (272)
213 cd01076 NAD_bind_1_Glu_DH NAD( 86.5 1.9 4.2E-05 47.8 7.5 112 1009-1130 31-160 (227)
214 COG2431 Predicted membrane pro 86.5 3.1 6.7E-05 47.1 8.9 90 628-722 108-202 (297)
215 PRK08293 3-hydroxybutyryl-CoA 86.4 2.1 4.6E-05 48.8 8.1 40 1010-1049 4-43 (287)
216 PF03956 DUF340: Membrane prot 86.4 4.2 9.2E-05 44.1 9.8 126 848-981 2-136 (191)
217 PRK08264 short chain dehydroge 86.3 1.5 3.2E-05 47.6 6.5 73 1010-1083 7-83 (238)
218 PLN02353 probable UDP-glucose 86.2 4.4 9.5E-05 49.8 11.0 72 1011-1084 3-89 (473)
219 TIGR02354 thiF_fam2 thiamine b 86.0 2.5 5.4E-05 46.0 8.0 95 1009-1105 21-142 (200)
220 PRK06019 phosphoribosylaminoim 85.9 1 2.2E-05 53.3 5.4 107 1011-1122 4-114 (372)
221 PF00072 Response_reg: Respons 85.9 5.8 0.00013 37.3 9.6 97 1035-1131 1-104 (112)
222 PF04012 PspA_IM30: PspA/IM30 85.8 33 0.00071 37.7 16.7 60 150-221 32-91 (221)
223 COG0240 GpsA Glycerol-3-phosph 85.8 1.7 3.7E-05 50.7 6.8 74 1011-1084 3-82 (329)
224 PRK13302 putative L-aspartate 85.8 2.8 6E-05 47.8 8.5 114 1010-1133 7-129 (271)
225 PLN02896 cinnamyl-alcohol dehy 85.7 1.2 2.7E-05 51.8 5.8 73 1009-1082 10-88 (353)
226 COG4651 RosB Kef-type K+ trans 85.7 7.5 0.00016 44.7 11.5 112 828-943 14-130 (408)
227 PRK03369 murD UDP-N-acetylmura 85.7 1.8 3.9E-05 53.2 7.5 74 1010-1089 13-86 (488)
228 PRK06035 3-hydroxyacyl-CoA deh 85.6 1.2 2.7E-05 50.7 5.6 39 1010-1048 4-42 (291)
229 PRK07024 short chain dehydroge 85.5 1 2.2E-05 49.7 4.8 72 1010-1081 3-86 (257)
230 COG0287 TyrA Prephenate dehydr 85.3 1.5 3.2E-05 50.2 6.1 119 1009-1133 3-127 (279)
231 PRK09903 putative transporter 85.3 80 0.0017 36.6 29.1 133 845-982 173-309 (314)
232 PRK07060 short chain dehydroge 85.3 1.3 2.7E-05 48.2 5.3 73 1010-1082 10-86 (245)
233 TIGR02356 adenyl_thiF thiazole 85.2 2.2 4.9E-05 46.3 7.2 88 1009-1098 21-136 (202)
234 PRK05808 3-hydroxybutyryl-CoA 85.2 3.9 8.5E-05 46.4 9.4 36 1011-1046 5-40 (282)
235 PF05276 SH3BP5: SH3 domain-bi 85.0 11 0.00025 42.2 12.6 156 150-319 16-172 (239)
236 PLN02650 dihydroflavonol-4-red 85.0 0.97 2.1E-05 52.6 4.5 72 1009-1081 5-85 (351)
237 COG3180 AbrB Putative ammonia 84.9 12 0.00027 44.0 13.2 107 606-716 190-300 (352)
238 PF12128 DUF3584: Protein of u 84.8 1.1E+02 0.0025 42.2 24.3 93 273-365 605-698 (1201)
239 PRK05884 short chain dehydroge 84.8 1.3 2.8E-05 48.3 5.1 69 1012-1080 3-76 (223)
240 PRK10698 phage shock protein P 84.7 66 0.0014 35.8 18.3 36 150-185 33-68 (222)
241 PRK06482 short chain dehydroge 84.6 1.3 2.7E-05 49.5 5.0 72 1010-1081 3-84 (276)
242 PRK06914 short chain dehydroge 84.5 1.3 2.9E-05 49.3 5.2 73 1010-1082 4-90 (280)
243 PF03547 Mem_trans: Membrane t 84.5 93 0.002 36.7 25.1 131 845-978 244-383 (385)
244 PF00899 ThiF: ThiF family; I 84.4 3.9 8.4E-05 41.2 8.0 114 1009-1146 2-119 (135)
245 cd01483 E1_enzyme_family Super 84.4 2 4.4E-05 43.6 6.0 86 1011-1098 1-114 (143)
246 PRK00141 murD UDP-N-acetylmura 84.3 2.5 5.5E-05 51.7 7.9 75 1009-1089 15-90 (473)
247 COG0771 MurD UDP-N-acetylmuram 83.9 5.3 0.00012 48.7 10.1 110 1009-1125 7-141 (448)
248 PRK12828 short chain dehydroge 83.8 1.9 4.1E-05 46.4 5.8 72 1011-1082 9-91 (239)
249 COG5420 Uncharacterized conser 83.8 3.1 6.8E-05 36.9 5.8 52 295-346 5-62 (71)
250 PLN02686 cinnamoyl-CoA reducta 83.8 1.5 3.2E-05 51.8 5.4 69 1009-1078 53-133 (367)
251 PRK07074 short chain dehydroge 83.7 2 4.3E-05 47.2 6.1 72 1011-1082 4-86 (257)
252 TIGR01763 MalateDH_bact malate 83.7 5.3 0.00012 46.3 9.7 131 1011-1147 3-163 (305)
253 COG2910 Putative NADH-flavin r 83.6 3.5 7.5E-05 44.5 7.3 71 1011-1084 3-73 (211)
254 PRK08265 short chain dehydroge 83.6 1.5 3.2E-05 48.8 5.0 72 1010-1081 7-88 (261)
255 PLN02662 cinnamyl-alcohol dehy 83.6 1.1 2.5E-05 50.9 4.2 71 1010-1081 5-84 (322)
256 PRK06101 short chain dehydroge 83.5 1.8 3.8E-05 47.5 5.5 59 1011-1069 3-64 (240)
257 PF01408 GFO_IDH_MocA: Oxidore 83.5 7.9 0.00017 37.6 9.5 97 1011-1116 2-105 (120)
258 PRK09072 short chain dehydroge 83.5 1.4 3E-05 48.8 4.8 73 1010-1082 6-89 (263)
259 PHA02562 46 endonuclease subun 83.5 1.2E+02 0.0025 37.9 22.1 29 217-245 254-282 (562)
260 PRK01710 murD UDP-N-acetylmura 83.5 2.9 6.2E-05 51.0 7.8 86 1010-1104 15-105 (458)
261 PLN00016 RNA-binding protein; 83.4 2.8 6.1E-05 49.5 7.5 89 1010-1100 53-158 (378)
262 PRK06949 short chain dehydroge 83.3 1.6 3.5E-05 47.9 5.1 73 1010-1082 10-95 (258)
263 PRK07530 3-hydroxybutyryl-CoA 83.3 5.6 0.00012 45.4 9.7 39 1010-1048 5-43 (292)
264 PRK12439 NAD(P)H-dependent gly 83.3 2.7 5.9E-05 49.3 7.2 100 1010-1112 8-116 (341)
265 PRK06483 dihydromonapterin red 83.2 1.9 4.1E-05 46.8 5.6 72 1010-1081 3-82 (236)
266 PRK02705 murD UDP-N-acetylmura 83.2 3 6.4E-05 50.6 7.8 78 1011-1089 2-84 (459)
267 PRK11199 tyrA bifunctional cho 83.2 4.1 8.9E-05 48.5 8.8 78 1009-1109 98-176 (374)
268 COG0679 Predicted permeases [G 83.1 88 0.0019 36.4 19.4 109 625-736 167-277 (311)
269 TIGR03025 EPS_sugtrans exopoly 83.0 16 0.00034 44.4 13.8 91 1009-1104 125-221 (445)
270 PTZ00325 malate dehydrogenase; 83.0 9.1 0.0002 44.8 11.3 136 1009-1146 8-172 (321)
271 TIGR01318 gltD_gamma_fam gluta 83.0 1.7 3.7E-05 53.2 5.6 77 1008-1085 140-238 (467)
272 PRK06940 short chain dehydroge 82.9 1.4 3E-05 49.6 4.5 73 1009-1082 2-85 (275)
273 PRK11908 NAD-dependent epimera 82.8 1.9 4.1E-05 50.0 5.7 67 1011-1078 3-73 (347)
274 PRK07680 late competence prote 82.8 5 0.00011 45.4 9.0 97 1012-1118 3-106 (273)
275 COG1346 LrgB Putative effector 82.8 87 0.0019 35.1 20.9 99 660-761 69-167 (230)
276 PRK07679 pyrroline-5-carboxyla 82.7 7.3 0.00016 44.2 10.2 67 1011-1085 5-77 (279)
277 PRK06924 short chain dehydroge 82.6 1.9 4.1E-05 47.2 5.3 59 1011-1069 3-66 (251)
278 PF12128 DUF3584: Protein of u 82.5 78 0.0017 43.7 21.4 27 149-175 314-340 (1201)
279 PF13514 AAA_27: AAA domain 82.4 92 0.002 42.6 21.9 27 158-184 746-772 (1111)
280 PRK06180 short chain dehydroge 82.4 1.8 3.9E-05 48.5 5.1 73 1010-1082 5-87 (277)
281 PF05701 WEMBL: Weak chloropla 82.3 80 0.0017 39.6 19.7 52 265-316 278-329 (522)
282 PLN02583 cinnamoyl-CoA reducta 82.2 2.8 6.1E-05 47.7 6.7 70 1009-1079 6-84 (297)
283 PLN02989 cinnamyl-alcohol dehy 82.1 2 4.2E-05 49.3 5.4 72 1010-1082 6-86 (325)
284 PRK08644 thiamine biosynthesis 82.0 6.1 0.00013 43.4 8.9 87 1009-1097 28-141 (212)
285 PLN02256 arogenate dehydrogena 81.9 3.6 7.7E-05 47.7 7.4 67 1010-1084 37-103 (304)
286 PRK07774 short chain dehydroge 81.9 1.7 3.7E-05 47.4 4.6 73 1010-1082 7-92 (250)
287 PRK10538 malonic semialdehyde 81.8 1.9 4.1E-05 47.4 5.0 70 1012-1081 3-82 (248)
288 PLN02735 carbamoyl-phosphate s 81.8 5.6 0.00012 53.8 10.1 113 1009-1122 23-158 (1102)
289 COG2085 Predicted dinucleotide 81.8 5.1 0.00011 44.0 8.0 116 1011-1137 3-120 (211)
290 PRK12939 short chain dehydroge 81.8 1.7 3.7E-05 47.3 4.6 73 1010-1082 8-93 (250)
291 PRK09424 pntA NAD(P) transhydr 81.7 4.6 0.0001 50.0 8.7 100 1009-1108 165-286 (509)
292 PRK04288 antiholin-like protei 81.6 54 0.0012 36.8 16.0 89 891-983 86-174 (232)
293 PRK02318 mannitol-1-phosphate 81.6 5 0.00011 47.9 8.7 44 1011-1054 2-46 (381)
294 PRK08177 short chain dehydroge 81.6 2.1 4.5E-05 46.3 5.2 71 1011-1081 3-79 (225)
295 PRK07231 fabG 3-ketoacyl-(acyl 81.6 2 4.3E-05 46.8 5.0 72 1011-1082 7-90 (251)
296 PRK08655 prephenate dehydrogen 81.6 3.4 7.4E-05 50.2 7.4 99 1011-1118 2-104 (437)
297 cd05292 LDH_2 A subgroup of L- 81.5 3.7 8.1E-05 47.5 7.4 132 1011-1149 2-163 (308)
298 PLN02545 3-hydroxybutyryl-CoA 81.5 7.1 0.00015 44.6 9.6 38 1010-1047 5-42 (295)
299 PRK06194 hypothetical protein; 81.3 1.7 3.6E-05 48.8 4.4 73 1010-1082 7-92 (287)
300 PF00999 Na_H_Exchanger: Sodiu 81.3 0.55 1.2E-05 55.2 0.5 111 832-942 8-124 (380)
301 TIGR01915 npdG NADPH-dependent 81.3 4.6 9.9E-05 44.3 7.6 67 1012-1085 3-80 (219)
302 PRK07819 3-hydroxybutyryl-CoA 81.2 3 6.4E-05 47.8 6.4 38 1010-1047 6-43 (286)
303 COG1842 PspA Phage shock prote 81.1 61 0.0013 36.3 16.2 60 150-221 33-92 (225)
304 PRK08339 short chain dehydroge 81.1 2 4.3E-05 48.0 4.9 73 1010-1082 9-94 (263)
305 PRK07067 sorbitol dehydrogenas 81.0 2 4.4E-05 47.3 4.9 72 1010-1081 7-88 (257)
306 PRK11281 hypothetical protein; 81.0 26 0.00057 47.4 15.7 134 196-337 62-203 (1113)
307 TIGR01472 gmd GDP-mannose 4,6- 81.0 2.4 5.1E-05 49.2 5.6 71 1011-1081 2-86 (343)
308 KOG1650 Predicted K+/H+-antipo 81.0 10 0.00023 49.4 11.8 86 655-742 310-397 (769)
309 PRK15116 sulfur acceptor prote 81.0 5.1 0.00011 45.7 8.0 90 1009-1098 30-146 (268)
310 PLN02712 arogenate dehydrogena 80.9 4.5 9.7E-05 51.8 8.4 91 1009-1109 369-461 (667)
311 TIGR02977 phageshock_pspA phag 80.9 96 0.0021 34.3 20.5 49 150-198 33-81 (219)
312 COG1004 Ugd Predicted UDP-gluc 80.9 6 0.00013 47.2 8.7 72 1011-1084 2-87 (414)
313 PRK00048 dihydrodipicolinate r 80.9 8.9 0.00019 43.3 10.0 123 1011-1142 3-130 (257)
314 PRK06928 pyrroline-5-carboxyla 80.9 7.8 0.00017 44.1 9.6 103 1011-1120 3-111 (277)
315 PRK12809 putative oxidoreducta 80.8 2.2 4.8E-05 54.3 5.7 76 1008-1084 309-406 (639)
316 cd02067 B12-binding B12 bindin 80.8 5.8 0.00013 39.0 7.5 70 1063-1132 40-114 (119)
317 KOG1201 Hydroxysteroid 17-beta 80.8 13 0.00028 42.9 11.1 80 1010-1105 39-119 (300)
318 PRK06057 short chain dehydroge 80.7 2.7 5.8E-05 46.3 5.7 73 1010-1082 8-88 (255)
319 PRK12429 3-hydroxybutyrate deh 80.7 2 4.3E-05 47.0 4.6 73 1010-1082 5-90 (258)
320 PRK07825 short chain dehydroge 80.6 2.3 4.9E-05 47.4 5.1 72 1010-1081 6-86 (273)
321 PRK12826 3-ketoacyl-(acyl-carr 80.5 2.5 5.5E-05 45.9 5.3 71 1011-1081 8-91 (251)
322 PRK08773 2-octaprenyl-3-methyl 80.4 1.2 2.7E-05 52.5 3.1 63 1010-1072 7-69 (392)
323 PRK07454 short chain dehydroge 80.3 2.9 6.3E-05 45.5 5.7 73 1010-1082 7-92 (241)
324 COG0025 NhaP NhaP-type Na+/H+ 80.3 32 0.0007 41.9 15.1 73 875-947 64-138 (429)
325 PRK07523 gluconate 5-dehydroge 80.2 2 4.3E-05 47.3 4.4 73 1010-1082 11-96 (255)
326 PRK12814 putative NADPH-depend 80.0 2.6 5.6E-05 53.8 5.9 75 1009-1084 193-289 (652)
327 TIGR03589 PseB UDP-N-acetylglu 80.0 2.6 5.6E-05 48.8 5.5 70 1011-1081 6-82 (324)
328 cd01080 NAD_bind_m-THF_DH_Cycl 79.9 2.4 5.3E-05 44.9 4.7 55 1009-1085 44-99 (168)
329 PRK05866 short chain dehydroge 79.9 2.9 6.4E-05 47.6 5.8 73 1010-1082 41-126 (293)
330 PF02826 2-Hacid_dh_C: D-isome 79.8 2.3 4.9E-05 45.2 4.5 91 1009-1108 36-128 (178)
331 PRK05565 fabG 3-ketoacyl-(acyl 79.8 2.2 4.8E-05 46.2 4.6 73 1010-1082 6-92 (247)
332 COG0702 Predicted nucleoside-d 79.8 15 0.00032 40.5 11.2 67 1014-1082 6-72 (275)
333 PLN02712 arogenate dehydrogena 79.7 3.3 7.1E-05 53.0 6.7 94 1008-1111 51-146 (667)
334 KOG0161 Myosin class II heavy 79.7 1.1E+02 0.0023 43.9 21.0 162 149-326 1523-1697(1930)
335 PRK05867 short chain dehydroge 79.7 2.1 4.7E-05 47.0 4.5 72 1010-1081 10-94 (253)
336 PRK08219 short chain dehydroge 79.5 3.5 7.7E-05 44.1 6.0 71 1011-1082 5-80 (227)
337 PRK15181 Vi polysaccharide bio 79.4 2.7 5.8E-05 49.1 5.4 71 1010-1081 16-98 (348)
338 PRK07831 short chain dehydroge 79.3 2.6 5.6E-05 46.6 5.0 73 1010-1082 18-106 (262)
339 TIGR00659 conserved hypothetic 79.3 79 0.0017 35.4 16.2 88 892-983 81-168 (226)
340 COG1086 Predicted nucleoside-d 79.3 36 0.00077 42.6 14.8 76 1007-1087 114-191 (588)
341 cd01487 E1_ThiF_like E1_ThiF_l 79.3 8.1 0.00018 41.1 8.5 111 1011-1146 1-116 (174)
342 PRK10263 DNA translocase FtsK; 79.3 24 0.00051 48.1 14.2 150 825-990 25-194 (1355)
343 TIGR01181 dTDP_gluc_dehyt dTDP 79.2 7.2 0.00016 43.9 8.7 70 1012-1082 2-82 (317)
344 PLN02858 fructose-bisphosphate 79.2 7.1 0.00015 54.0 10.0 109 1010-1127 325-445 (1378)
345 TIGR00561 pntA NAD(P) transhyd 79.2 6.4 0.00014 48.8 8.6 101 1009-1109 164-286 (511)
346 PRK10711 hypothetical protein; 79.1 52 0.0011 36.9 14.8 88 892-983 82-169 (231)
347 PF01262 AlaDh_PNT_C: Alanine 79.1 1.7 3.6E-05 45.8 3.2 96 1009-1106 20-137 (168)
348 PRK04288 antiholin-like protei 79.1 1.2E+02 0.0025 34.2 23.0 53 659-712 71-123 (232)
349 PRK12815 carB carbamoyl phosph 79.1 3.7 8E-05 55.4 7.2 113 1009-1122 7-142 (1068)
350 TIGR00745 apbA_panE 2-dehydrop 79.0 9.6 0.00021 42.9 9.5 98 1020-1118 2-104 (293)
351 PRK08217 fabG 3-ketoacyl-(acyl 78.9 2.5 5.4E-05 46.0 4.7 73 1010-1082 6-91 (253)
352 PRK00045 hemA glutamyl-tRNA re 78.9 2.6 5.7E-05 50.9 5.3 73 1010-1088 183-257 (423)
353 KOG1298 Squalene monooxygenase 78.9 2.9 6.3E-05 49.4 5.3 37 1007-1043 43-79 (509)
354 PRK13304 L-aspartate dehydroge 78.9 13 0.00028 42.2 10.5 115 1011-1136 3-129 (265)
355 PRK07814 short chain dehydroge 78.9 2.5 5.5E-05 46.9 4.8 72 1010-1081 11-95 (263)
356 PRK13394 3-hydroxybutyrate deh 78.8 2.5 5.3E-05 46.4 4.6 73 1010-1082 8-93 (262)
357 PRK12548 shikimate 5-dehydroge 78.7 4.8 0.0001 46.2 7.1 112 1010-1122 127-254 (289)
358 PRK08223 hypothetical protein; 78.6 6.7 0.00015 45.2 8.1 113 1009-1147 27-147 (287)
359 PRK06196 oxidoreductase; Provi 78.6 2.8 6.1E-05 48.1 5.2 72 1010-1081 27-107 (315)
360 COG5505 Predicted integral mem 78.5 1.4E+02 0.0031 34.8 31.5 123 850-981 253-375 (384)
361 PRK04778 septation ring format 78.5 1.4E+02 0.003 37.8 20.3 158 190-366 278-439 (569)
362 PRK08643 acetoin reductase; Va 78.5 2.6 5.6E-05 46.3 4.7 71 1011-1081 4-87 (256)
363 PTZ00117 malate dehydrogenase; 78.4 24 0.00053 41.1 12.8 132 1010-1148 6-168 (319)
364 PRK06138 short chain dehydroge 78.4 2.5 5.4E-05 46.1 4.5 73 1010-1082 6-90 (252)
365 PRK09186 flagellin modificatio 78.3 3.1 6.8E-05 45.5 5.3 72 1010-1081 5-91 (256)
366 PF02737 3HCDH_N: 3-hydroxyacy 78.3 1.8 3.8E-05 46.3 3.1 104 1011-1116 1-122 (180)
367 TIGR02355 moeB molybdopterin s 78.2 16 0.00035 40.9 10.9 112 1009-1146 24-141 (240)
368 PRK06200 2,3-dihydroxy-2,3-dih 78.2 3 6.4E-05 46.2 5.1 72 1010-1081 7-88 (263)
369 PRK05086 malate dehydrogenase; 78.2 15 0.00032 42.8 10.9 131 1011-1146 2-165 (312)
370 PRK07608 ubiquinone biosynthes 78.1 1.8 3.8E-05 50.9 3.4 65 1008-1072 4-68 (388)
371 PF00289 CPSase_L_chain: Carba 78.0 1.8 4E-05 42.7 3.0 38 1010-1047 3-40 (110)
372 PLN00198 anthocyanidin reducta 78.0 2.6 5.6E-05 48.7 4.7 71 1010-1081 10-88 (338)
373 PRK07890 short chain dehydroge 77.9 3 6.5E-05 45.7 5.0 73 1010-1082 6-91 (258)
374 COG1064 AdhP Zn-dependent alco 77.8 6.9 0.00015 46.0 8.0 72 1009-1082 167-238 (339)
375 PRK06223 malate dehydrogenase; 77.8 6.5 0.00014 45.2 7.8 132 1011-1149 4-166 (307)
376 PRK12810 gltD glutamate syntha 77.6 3.3 7.2E-05 50.6 5.7 76 1008-1084 142-239 (471)
377 COG1179 Dinucleotide-utilizing 77.6 2.9 6.2E-05 46.8 4.5 93 1009-1126 30-127 (263)
378 cd01492 Aos1_SUMO Ubiquitin ac 77.5 13 0.00028 40.4 9.5 113 1009-1146 21-137 (197)
379 PRK15477 oxaloacetate decarbox 77.5 1.7E+02 0.0036 35.1 25.7 67 662-728 138-207 (433)
380 PF03977 OAD_beta: Na+-transpo 77.5 55 0.0012 38.5 14.7 74 874-949 68-141 (360)
381 PRK08213 gluconate 5-dehydroge 77.5 2.7 5.8E-05 46.4 4.4 73 1010-1082 13-98 (259)
382 PRK13243 glyoxylate reductase; 77.3 3.2 7E-05 48.6 5.2 86 1009-1104 150-237 (333)
383 PRK06181 short chain dehydroge 77.3 2.8 6E-05 46.3 4.5 71 1011-1081 3-86 (263)
384 PLN02858 fructose-bisphosphate 77.1 9.2 0.0002 52.9 10.1 117 1010-1136 5-133 (1378)
385 PF03390 2HCT: 2-hydroxycarbox 77.1 1.3E+02 0.0028 36.6 18.3 149 841-989 57-215 (414)
386 PF12718 Tropomyosin_1: Tropom 77.1 21 0.00045 37.1 10.4 61 269-329 15-75 (143)
387 PTZ00082 L-lactate dehydrogena 77.1 6.6 0.00014 45.9 7.6 131 1010-1147 7-173 (321)
388 PLN02253 xanthoxin dehydrogena 77.0 3.4 7.4E-05 46.2 5.2 72 1010-1081 19-102 (280)
389 PRK08309 short chain dehydroge 77.0 3.3 7.2E-05 44.2 4.8 87 1011-1098 2-99 (177)
390 TIGR01142 purT phosphoribosylg 77.0 2.8 6.1E-05 49.4 4.7 107 1012-1122 2-115 (380)
391 PRK12779 putative bifunctional 76.8 3.3 7.2E-05 55.0 5.7 75 1009-1083 306-402 (944)
392 PRK08251 short chain dehydroge 76.7 3.4 7.5E-05 45.0 5.0 71 1011-1081 4-89 (248)
393 TIGR03206 benzo_BadH 2-hydroxy 76.7 3.2 6.9E-05 45.2 4.7 73 1010-1082 4-89 (250)
394 cd00757 ThiF_MoeB_HesA_family 76.7 11 0.00024 41.7 8.9 114 1009-1146 21-138 (228)
395 TIGR01963 PHB_DH 3-hydroxybuty 76.7 3.8 8.3E-05 44.7 5.3 71 1011-1081 3-86 (255)
396 PRK07531 bifunctional 3-hydrox 76.6 6 0.00013 48.9 7.5 74 1011-1085 6-92 (495)
397 PRK06476 pyrroline-5-carboxyla 76.6 7.2 0.00016 43.7 7.6 66 1011-1084 2-72 (258)
398 PRK15182 Vi polysaccharide bio 76.6 7.2 0.00016 47.3 8.0 70 1011-1084 8-87 (425)
399 PRK02472 murD UDP-N-acetylmura 76.6 6.7 0.00014 47.4 7.8 73 1010-1087 6-82 (447)
400 PRK15476 oxaloacetate decarbox 76.5 1.8E+02 0.0038 34.9 25.7 67 662-728 138-207 (433)
401 COG0373 HemA Glutamyl-tRNA red 76.5 5.7 0.00012 47.9 6.9 74 1009-1088 178-253 (414)
402 PRK08013 oxidoreductase; Provi 76.5 1.9 4.2E-05 51.2 3.2 63 1010-1072 4-67 (400)
403 PRK00421 murC UDP-N-acetylmura 76.4 6.2 0.00013 48.1 7.5 74 1010-1090 8-83 (461)
404 PRK08267 short chain dehydroge 76.4 3.9 8.6E-05 45.1 5.4 72 1011-1082 3-86 (260)
405 PRK00066 ldh L-lactate dehydro 76.3 14 0.00031 43.0 10.1 131 1010-1148 7-168 (315)
406 PRK12769 putative oxidoreducta 76.3 2.7 5.8E-05 53.6 4.5 74 1009-1083 327-422 (654)
407 PRK06500 short chain dehydroge 76.2 3.7 8.1E-05 44.7 5.1 72 1010-1081 7-88 (249)
408 PRK05653 fabG 3-ketoacyl-(acyl 76.2 4.4 9.5E-05 43.7 5.6 72 1010-1081 6-90 (246)
409 PLN02214 cinnamoyl-CoA reducta 76.2 4.3 9.3E-05 47.3 5.9 72 1010-1082 11-90 (342)
410 PRK12936 3-ketoacyl-(acyl-carr 76.2 4.6 9.9E-05 43.8 5.7 73 1010-1082 7-89 (245)
411 PLN02735 carbamoyl-phosphate s 76.1 2.4 5.1E-05 57.3 4.1 78 1009-1086 574-662 (1102)
412 PRK05717 oxidoreductase; Valid 76.1 4.4 9.6E-05 44.6 5.7 72 1010-1081 11-92 (255)
413 PF12777 MT: Microtubule-bindi 76.0 16 0.00036 43.0 10.6 94 270-366 10-103 (344)
414 PHA02557 22 prohead core prote 75.9 1.5E+02 0.0033 33.9 18.8 59 277-335 143-201 (271)
415 PRK14619 NAD(P)H-dependent gly 75.9 13 0.00028 42.9 9.5 32 1011-1042 6-37 (308)
416 PRK15475 oxaloacetate decarbox 75.9 1.8E+02 0.004 34.8 25.8 67 662-728 138-207 (433)
417 PRK05786 fabG 3-ketoacyl-(acyl 75.8 3.5 7.6E-05 44.6 4.7 73 1010-1082 6-90 (238)
418 PF07888 CALCOCO1: Calcium bin 75.6 1.2E+02 0.0026 38.1 17.8 146 150-314 285-449 (546)
419 TIGR01832 kduD 2-deoxy-D-gluco 75.6 4.2 9.1E-05 44.4 5.3 72 1010-1081 6-88 (248)
420 TIGR00634 recN DNA repair prot 75.6 74 0.0016 40.1 16.8 17 227-243 275-291 (563)
421 PRK05479 ketol-acid reductoiso 75.5 6.2 0.00013 46.4 6.8 68 1010-1086 18-86 (330)
422 TIGR01035 hemA glutamyl-tRNA r 75.4 4 8.6E-05 49.3 5.4 72 1010-1087 181-254 (417)
423 PRK05875 short chain dehydroge 75.4 3.4 7.4E-05 46.0 4.6 73 1010-1082 8-95 (276)
424 PRK12472 hypothetical protein; 75.4 54 0.0012 40.2 14.4 100 214-354 221-320 (508)
425 TIGR03319 YmdA_YtgF conserved 75.3 2.3E+02 0.0049 35.6 20.6 26 504-531 270-295 (514)
426 PRK08268 3-hydroxy-acyl-CoA de 75.3 7.2 0.00016 48.4 7.7 39 1010-1048 8-46 (507)
427 PRK03612 spermidine synthase; 75.3 2.3E+02 0.0049 35.6 28.6 108 1009-1121 298-437 (521)
428 PRK07533 enoyl-(acyl carrier p 75.3 5.8 0.00013 44.1 6.3 71 1010-1080 11-95 (258)
429 PRK08849 2-octaprenyl-3-methyl 75.2 2.4 5.2E-05 50.1 3.5 62 1011-1072 5-67 (384)
430 PLN02602 lactate dehydrogenase 75.2 19 0.00041 42.7 10.8 133 1010-1149 38-201 (350)
431 TIGR01161 purK phosphoribosyla 75.1 4.5 9.6E-05 47.4 5.6 106 1012-1122 2-112 (352)
432 PRK06079 enoyl-(acyl carrier p 75.0 4.6 9.9E-05 44.7 5.4 71 1010-1080 8-90 (252)
433 PF00070 Pyr_redox: Pyridine n 74.9 2.1 4.5E-05 39.1 2.3 34 1011-1044 1-34 (80)
434 TIGR01316 gltA glutamate synth 74.8 5 0.00011 48.8 6.1 74 1009-1083 133-228 (449)
435 PRK07066 3-hydroxybutyryl-CoA 74.7 6.2 0.00013 46.2 6.6 39 1010-1048 8-46 (321)
436 PRK08125 bifunctional UDP-gluc 74.7 3.5 7.6E-05 52.6 5.0 68 1010-1078 316-387 (660)
437 TIGR00808 malonate_madM malona 74.6 37 0.00081 37.2 11.6 107 604-712 16-135 (254)
438 cd05293 LDH_1 A subgroup of L- 74.6 26 0.00056 40.9 11.6 133 1009-1148 3-166 (312)
439 TIGR02279 PaaC-3OHAcCoADH 3-hy 74.5 5.3 0.00012 49.5 6.3 38 1011-1048 7-44 (503)
440 COG0654 UbiH 2-polyprenyl-6-me 74.4 2.8 6E-05 49.8 3.7 58 1010-1071 3-60 (387)
441 PRK10476 multidrug resistance 74.4 28 0.0006 40.8 12.0 50 194-243 128-177 (346)
442 PRK08277 D-mannonate oxidoredu 74.4 3.6 7.7E-05 46.0 4.4 73 1010-1082 11-96 (278)
443 PRK08591 acetyl-CoA carboxylas 74.3 5.5 0.00012 48.3 6.3 113 1010-1122 3-129 (451)
444 PF04172 LrgB: LrgB-like famil 74.3 86 0.0019 34.9 14.8 88 892-983 71-158 (215)
445 PRK07576 short chain dehydroge 74.0 4 8.8E-05 45.4 4.7 71 1010-1080 10-93 (264)
446 PF01073 3Beta_HSD: 3-beta hyd 73.9 4.1 8.9E-05 46.5 4.8 66 1014-1080 3-73 (280)
447 cd00755 YgdL_like Family of ac 73.9 8.5 0.00018 43.0 7.1 89 1009-1098 11-127 (231)
448 PRK04308 murD UDP-N-acetylmura 73.8 7.5 0.00016 47.1 7.3 75 1010-1090 6-84 (445)
449 TIGR02622 CDP_4_6_dhtase CDP-g 73.8 4.8 0.0001 46.8 5.4 73 1010-1082 5-84 (349)
450 COG0686 Ald Alanine dehydrogen 73.7 12 0.00027 43.4 8.3 102 1007-1109 166-270 (371)
451 PRK05597 molybdopterin biosynt 73.7 16 0.00035 43.2 9.8 115 1009-1146 28-145 (355)
452 PRK12833 acetyl-CoA carboxylas 73.6 5.6 0.00012 48.7 6.2 115 1009-1123 5-133 (467)
453 COG1087 GalE UDP-glucose 4-epi 73.6 4.4 9.6E-05 46.7 4.8 64 1015-1078 7-72 (329)
454 PLN00203 glutamyl-tRNA reducta 73.5 3.7 7.9E-05 51.0 4.5 74 1009-1086 266-342 (519)
455 PRK09310 aroDE bifunctional 3- 73.5 18 0.00039 44.6 10.5 129 1010-1160 333-469 (477)
456 PLN02986 cinnamyl-alcohol dehy 73.5 3.7 8.1E-05 47.0 4.4 71 1010-1081 6-85 (322)
457 PRK02006 murD UDP-N-acetylmura 73.2 7.8 0.00017 47.8 7.3 72 1010-1087 8-83 (498)
458 PRK06463 fabG 3-ketoacyl-(acyl 73.2 6 0.00013 43.6 5.8 72 1010-1081 8-87 (255)
459 PRK03803 murD UDP-N-acetylmura 73.1 8.9 0.00019 46.5 7.7 76 1009-1090 6-85 (448)
460 PRK07666 fabG 3-ketoacyl-(acyl 72.9 4.2 9.1E-05 44.2 4.4 73 1010-1082 8-93 (239)
461 PRK12384 sorbitol-6-phosphate 72.9 4.2 9.2E-05 44.7 4.5 72 1011-1082 4-90 (259)
462 TIGR03023 WcaJ_sugtrans Undeca 72.9 46 0.00099 40.6 13.7 91 1009-1104 128-224 (451)
463 COG0451 WcaG Nucleoside-diphos 72.9 4.1 8.9E-05 45.8 4.5 68 1012-1080 3-71 (314)
464 PRK14806 bifunctional cyclohex 72.9 7.4 0.00016 50.3 7.3 69 1010-1084 4-74 (735)
465 PF02310 B12-binding: B12 bind 72.8 9.2 0.0002 37.3 6.4 90 1022-1129 18-113 (121)
466 PRK09414 glutamate dehydrogena 72.8 12 0.00026 45.7 8.6 114 1009-1129 232-367 (445)
467 PF00056 Ldh_1_N: lactate/mala 72.8 6.7 0.00015 40.2 5.6 93 1011-1110 2-120 (141)
468 cd08230 glucose_DH Glucose deh 72.6 11 0.00025 43.8 8.2 90 1010-1104 174-266 (355)
469 PRK12480 D-lactate dehydrogena 72.6 7.5 0.00016 45.6 6.6 83 1011-1105 148-232 (330)
470 TIGR01082 murC UDP-N-acetylmur 72.6 7.7 0.00017 47.1 7.0 73 1011-1090 1-75 (448)
471 cd00650 LDH_MDH_like NAD-depen 72.6 6.9 0.00015 44.1 6.2 130 1012-1147 1-163 (263)
472 cd01485 E1-1_like Ubiquitin ac 72.6 11 0.00024 40.9 7.4 98 1009-1107 19-146 (198)
473 PRK01581 speE spermidine synth 72.6 18 0.0004 43.1 9.7 111 1010-1124 152-293 (374)
474 PRK07878 molybdopterin biosynt 72.5 23 0.00049 42.6 10.8 115 1009-1146 42-159 (392)
475 PRK09135 pteridine reductase; 72.5 5.7 0.00012 43.1 5.3 73 1010-1082 7-94 (249)
476 TIGR00840 b_cpa1 sodium/hydrog 72.4 51 0.0011 41.6 14.2 74 873-946 68-150 (559)
477 PRK06179 short chain dehydroge 72.3 4.4 9.5E-05 45.0 4.5 70 1011-1082 6-82 (270)
478 PRK07574 formate dehydrogenase 72.3 27 0.00058 42.0 11.2 87 1010-1104 193-281 (385)
479 PRK06184 hypothetical protein; 72.2 1.8 4E-05 53.1 1.6 57 1010-1071 4-60 (502)
480 PRK01130 N-acetylmannosamine-6 72.2 58 0.0013 35.7 13.1 104 1020-1126 24-145 (221)
481 PRK07877 hypothetical protein; 72.1 15 0.00033 47.4 9.7 111 1009-1147 107-224 (722)
482 PRK07102 short chain dehydroge 72.1 4.4 9.6E-05 44.2 4.4 71 1011-1081 3-84 (243)
483 PRK06139 short chain dehydroge 72.1 5.2 0.00011 46.7 5.2 73 1010-1082 8-93 (330)
484 COG1579 Zn-ribbon protein, pos 72.1 1.8E+02 0.0039 32.9 20.8 68 268-335 89-156 (239)
485 TIGR02415 23BDH acetoin reduct 72.1 4.5 9.9E-05 44.2 4.5 72 1011-1082 2-86 (254)
486 PRK07364 2-octaprenyl-6-methox 72.1 3.5 7.5E-05 49.0 3.8 62 1007-1071 16-77 (415)
487 PRK07109 short chain dehydroge 72.0 4.5 9.7E-05 47.2 4.6 72 1010-1081 9-93 (334)
488 PRK12829 short chain dehydroge 71.9 5.3 0.00012 43.8 5.0 73 1010-1082 12-95 (264)
489 PRK15469 ghrA bifunctional gly 71.8 15 0.00033 42.8 8.8 85 1010-1104 137-223 (312)
490 COG3524 KpsE Capsule polysacch 71.8 85 0.0018 36.4 14.1 64 167-245 142-206 (372)
491 COG1883 OadB Na+-transporting 71.8 1.5E+02 0.0033 34.3 16.0 99 626-727 40-150 (375)
492 PTZ00314 inosine-5'-monophosph 71.8 18 0.00039 44.9 9.9 117 1014-1132 235-378 (495)
493 PRK12320 hypothetical protein; 71.7 9.1 0.0002 49.3 7.5 68 1011-1083 2-70 (699)
494 COG0300 DltE Short-chain dehyd 71.7 5.2 0.00011 45.6 4.8 62 1009-1070 6-75 (265)
495 TIGR03136 malonate_biotin Na+- 71.6 1.2E+02 0.0026 36.2 15.7 75 874-949 104-178 (399)
496 PRK12771 putative glutamate sy 71.6 3.7 8.1E-05 51.4 4.1 77 1008-1085 136-234 (564)
497 PF05982 DUF897: Domain of unk 71.5 38 0.00082 39.7 11.6 135 629-766 183-322 (327)
498 COG3967 DltE Short-chain dehyd 71.4 28 0.00061 38.5 9.9 125 1009-1161 4-130 (245)
499 PRK06124 gluconate 5-dehydroge 71.4 5.8 0.00013 43.6 5.1 72 1011-1082 13-97 (256)
500 PRK08850 2-octaprenyl-6-methox 71.4 2.5 5.4E-05 50.3 2.4 64 1011-1074 6-69 (405)
No 1
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=1e-74 Score=709.01 Aligned_cols=556 Identities=37% Similarity=0.595 Sum_probs=499.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcCChhHHHhc
Q 001051 601 ASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSM 680 (1173)
Q Consensus 601 ~~Ll~l~lLLl~A~ilg~L~~Rl~~lP~IvG~LLaGILLGP~gLgli~~~~~~~~LaeLGL~~LLF~aGLEldl~~Lrr~ 680 (1173)
..++.+++++.++.+++++++|+ ++|+++|||++|+++||+++|++++.+.+..++++|++++||.+|+|+|++++++.
T Consensus 5 ~~l~~~~~~l~~a~i~~~l~~rl-~lp~vlgyilaGillGP~~lg~i~~~~~i~~laelGvv~LlF~iGLEl~~~~l~~~ 83 (621)
T PRK03562 5 HTLIQALIYLGAAVLIVPIAVRL-GLGSVLGYLIAGCIIGPWGLRLVTDVESILHFAEFGVVLMLFVIGLELDPQRLWKL 83 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 46788899999999999999999 99999999999999999999999888889999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHHHHHHHHhcCCCCCchhHHHHHHHhhhhHHHHH
Q 001051 681 KKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVV 760 (1173)
Q Consensus 681 ~k~il~La~~~vllt~~~vgll~~~llGls~~~ALlLGaiLS~TSpaVVv~vL~elg~l~s~~grl~Ls~sllnDi~aIv 760 (1173)
++.++.++..++++++++++. +.+++|++|..++++|.+++.|||++++++|+|++..+++.|+.++++++++|+++++
T Consensus 84 ~~~~~~~g~~qv~~~~~~~~~-~~~~~g~~~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~~~l~~ll~~Dl~~i~ 162 (621)
T PRK03562 84 RRSIFGGGALQMVACGGLLGL-FCMLLGLRWQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGRSAFAILLFQDIAAIP 162 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHH
Confidence 999999999999998865544 4567799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 001051 761 LLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTA 840 (1173)
Q Consensus 761 lf~ll~~la~~~s~g~~~~~~i~~~Lgl~ll~iil~ill~llig~~llrpil~~l~~~~~~el~~l~vLal~lg~~~lae 840 (1173)
++++++.+..... +.+.. .++..++..++.+++++++++|+.+|+++|+.+.+.++.++..+++++++++++++
T Consensus 163 ll~l~~~l~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~e~~~~~~l~lv~~~a~la~ 236 (621)
T PRK03562 163 LVAMIPLLAASGA--STTLG----AFALSALKVAGALALVVLGGRYVTRPALRFVARSGLREVFTAVALFLVFGFGLLME 236 (621)
T ss_pred HHHHHHHHccCCC--ccchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence 9988776643211 11111 12222334445555667778899999999998888889888888899999999999
Q ss_pred HhchhHHHHHHHHHHhhcccchhHHHHHhHhhHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001051 841 RAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVG 920 (1173)
Q Consensus 841 ~lGLS~vLGAFvAGLiLsn~~~~~~l~e~l~~~~~~LlpiFFv~iGm~Idl~~L~~~~~lilllvvllvv~K~l~v~l~~ 920 (1173)
.+|+|+++|||+||++++++++++.+++.+++++++|+|+||+++||++|+..+...++.++.++++.+++|++++++.+
T Consensus 237 ~~Gls~~lGAFlAGl~l~~~~~~~~le~~i~pf~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~~~ 316 (621)
T PRK03562 237 EVGLSMALGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWLLA 316 (621)
T ss_pred HhCccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998877666666666778899999999999
Q ss_pred HhcCCChhhhhhhhhcccCCcchhhHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhHHh-hhhhccccccC
Q 001051 921 RLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGISMALTPWLAAGGQLIAS-RFEQHDVRSLL 999 (1173)
Q Consensus 921 ~l~g~~~real~lGl~LaprGevalvla~lAl~~giis~el~silvlvVvlS~iItPiL~~~~~~La~-rl~~~~~r~~~ 999 (1173)
+++|+++++++.+|+.|+++|+|+++++..+.+.+.++++.++++++++++|++++|++..+..++.. ++.... .
T Consensus 317 ~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~lS~~~tP~l~~~~~~~~~~~~~~~~----~ 392 (621)
T PRK03562 317 RPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVALSMAATPLLLVLLDRLEQSRTEEAR----E 392 (621)
T ss_pred HHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhcc----c
Confidence 99999999999999999999999999999999999999999999999999999999999877654433 322111 0
Q ss_pred CCccccccccccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEE
Q 001051 1000 PVESETDDLQDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAI 1079 (1173)
Q Consensus 1000 p~e~~~~~lk~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi 1079 (1173)
+...++.++|+||||+|++|+.+++.|.++|+++++||.|+++++.+++.|+++++||++++++|+++|+++|+.+|+
T Consensus 393 --~~~~~~~~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv 470 (621)
T PRK03562 393 --ADEIDEQQPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLIN 470 (621)
T ss_pred --ccccccccCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEE
Confidence 112234478999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCcchHHHHHHHHhhCCCceEEEEecChhhHHHHHHCCCCeeecCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 001051 1080 TLDTPGANYRTVWALSKYFPNVKTFVRAHDIDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPASEIAATINEFRT 1159 (1173)
Q Consensus 1080 ~t~Dd~~Ni~iv~~ar~l~p~~~IIara~d~e~~~~L~~aGAd~VI~p~~~aa~~LA~~vl~~l~~~~~ei~~~i~~~r~ 1159 (1173)
+++||+.|..++..+|+++|+.+|++|++|+++.+.|+++|||+|++++.+.+..++++++..+|+|.+++.+.++.+|+
T Consensus 471 ~~~d~~~n~~i~~~ar~~~p~~~iiaRa~d~~~~~~L~~~Gad~v~~e~~e~sl~l~~~~L~~lg~~~~~~~~~~~~~r~ 550 (621)
T PRK03562 471 AIDDPQTSLQLVELVKEHFPHLQIIARARDVDHYIRLRQAGVEKPERETFEGALKSGRLVLESLGLGPYEARERADRFRR 550 (621)
T ss_pred EeCCHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHCCCCEEehhhHhHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchHHhHhhhh
Q 001051 1160 RHLSELTEVLK 1170 (1173)
Q Consensus 1160 ~~~~~l~~~~~ 1170 (1173)
+|+..+++.++
T Consensus 551 ~~~~~~~~~~~ 561 (621)
T PRK03562 551 HNLQMVEEMAP 561 (621)
T ss_pred HHHHHHHHHhh
Confidence 99999988644
No 2
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=1.4e-74 Score=706.52 Aligned_cols=559 Identities=35% Similarity=0.574 Sum_probs=498.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcCChhHH
Q 001051 598 EEEASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERL 677 (1173)
Q Consensus 598 ~~~~~Ll~l~lLLl~A~ilg~L~~Rl~~lP~IvG~LLaGILLGP~gLgli~~~~~~~~LaeLGL~~LLF~aGLEldl~~L 677 (1173)
++...+..+.+++.++.+++++++|+ ++|+++||+++|+++||+++|++++.+....++++|++++||.+|+|+|++++
T Consensus 2 ~~~~~~~~~~~~l~~a~~~~~l~~rl-~~p~ilg~ilaGillGP~~lg~i~~~~~i~~laelGvv~LLF~iGLel~~~~l 80 (601)
T PRK03659 2 EGSDLLTAGVLFLFAAVVAVPLAQRL-GIGAVLGYLLAGIAIGPWGLGFISDVDEILHFSELGVVFLMFIIGLELNPSKL 80 (601)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHHHHHhccccccCCCcHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 45677788888888999999999999 99999999999999999999999887888999999999999999999999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHHHHHHHHhcCCCCCchhHHHHHHHhhhhHH
Q 001051 678 SSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLA 757 (1173)
Q Consensus 678 rr~~k~il~La~~~vllt~~~vgll~~~llGls~~~ALlLGaiLS~TSpaVVv~vL~elg~l~s~~grl~Ls~sllnDi~ 757 (1173)
++.++.++.++..++++++++++.+.+ ++|++|..++++|++++.|||++++++|+|++..+++.|++++++++++|+.
T Consensus 81 ~~~~~~~~~~g~~~v~~t~~~~~~~~~-~~g~~~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~~l~vll~~Di~ 159 (601)
T PRK03659 81 WQLRRSIFGVGAAQVLLSAAVLAGLLM-LTDFSWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQDLA 159 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHccCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHHHHHHHHHHHH
Confidence 999999999999999999876665544 5799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 001051 758 VVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSL 837 (1173)
Q Consensus 758 aIvlf~ll~~la~~~s~g~~~~~~i~~~Lgl~ll~iil~ill~llig~~llrpil~~l~~~~~~el~~l~vLal~lg~~~ 837 (1173)
+++++.+++.+..... + . ..+. .+ ...++.+++.+++++|+.+|+++|+.+.+.++.+++.++++++++++
T Consensus 160 ~i~ll~l~~~l~~~~~-~--~-~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~vl~~a~ 230 (601)
T PRK03659 160 VIPALALVPLLAGSAD-E--H-FDWM-KI----GMKVLAFAGMLIGGRYLLRPLFRFIAASGVREVFTAAALLLVLGSAL 230 (601)
T ss_pred HHHHHHHHHHHhcCCC-c--c-hHHH-HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 9999888766653211 1 1 1111 11 11223334456678889999999998877889988888889999999
Q ss_pred HHHHhchhHHHHHHHHHHhhcccchhHHHHHhHhhHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 001051 838 LTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVA 917 (1173)
Q Consensus 838 lae~lGLS~vLGAFvAGLiLsn~~~~~~l~e~l~~~~~~LlpiFFv~iGm~Idl~~L~~~~~lilllvvllvv~K~l~v~ 917 (1173)
+++.+|+|+++|||++|++++++++++++++.+++++++|+|+||+++||.+|+..+...|+.++.++++.+++|+++++
T Consensus 231 l~~~~Gls~~LGAFlaGl~l~~s~~~~~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~~K~~~~~ 310 (601)
T PRK03659 231 FMDALGLSMALGTFIAGVLLAESEYRHELEIAIEPFKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLVAVKGLVLY 310 (601)
T ss_pred HHHHhCccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888777766777778899999999
Q ss_pred HHHHhcCCChhhhhhhhhcccCCcchhhHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhHH-hhhhhcccc
Q 001051 918 LVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGISMALTPWLAAGGQLIA-SRFEQHDVR 996 (1173)
Q Consensus 918 l~~~l~g~~~real~lGl~LaprGevalvla~lAl~~giis~el~silvlvVvlS~iItPiL~~~~~~La-~rl~~~~~r 996 (1173)
+.++++|+++++++.+|+.|+|+|+|+++++..+.+.|.++++.++.+++++++|++++|++.+...++. +++...+..
T Consensus 311 ~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~~~~~~~~~~~~~~~~~~ 390 (601)
T PRK03659 311 LLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSMMTTPLLMKLIDKWLARRLNGPEEE 390 (601)
T ss_pred HHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998765543 333211110
Q ss_pred ccCCCccccccccccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCE
Q 001051 997 SLLPVESETDDLQDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACA 1076 (1173)
Q Consensus 997 ~~~p~e~~~~~lk~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~ 1076 (1173)
..+ ...++.++|+||||+|++|+.+++.|.++|++|++||.|+++++.+++.|.++++||++++++|+++|+++|+.
T Consensus 391 -~~~--~~~~~~~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~ 467 (601)
T PRK03659 391 -DEK--PWVEDDKPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEA 467 (601)
T ss_pred -ccc--cccccccCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCE
Confidence 001 12234578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCcchHHHHHHHHhhCCCceEEEEecChhhHHHHHHCCCCeeecCCcHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 001051 1077 AAITLDTPGANYRTVWALSKYFPNVKTFVRAHDIDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPASEIAATINE 1156 (1173)
Q Consensus 1077 VVi~t~Dd~~Ni~iv~~ar~l~p~~~IIara~d~e~~~~L~~aGAd~VI~p~~~aa~~LA~~vl~~l~~~~~ei~~~i~~ 1156 (1173)
+|++++||+.|..++..+|+++|+.+|++|++|+++.+.|+++|+|+|++++.+++..++++++..+|+|..++.+.+++
T Consensus 468 vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa~~~~~~~~L~~~Ga~~vv~e~~es~l~l~~~~L~~lg~~~~~~~~~~~~ 547 (601)
T PRK03659 468 IVITCNEPEDTMKIVELCQQHFPHLHILARARGRVEAHELLQAGVTQFSRETFSSALELGRKTLVSLGMHPHQAQRAQQH 547 (601)
T ss_pred EEEEeCCHHHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHhCCCCEEEccHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhchHHhHhhhh
Q 001051 1157 FRTRHLSELTEVLK 1170 (1173)
Q Consensus 1157 ~r~~~~~~l~~~~~ 1170 (1173)
+|++|+..+++.++
T Consensus 548 ~r~~~~~~~~~~~~ 561 (601)
T PRK03659 548 FRRLDMRMLRELMP 561 (601)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987644
No 3
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=4.3e-68 Score=645.93 Aligned_cols=541 Identities=27% Similarity=0.403 Sum_probs=458.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcCChhHHHh
Q 001051 600 EASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSS 679 (1173)
Q Consensus 600 ~~~Ll~l~lLLl~A~ilg~L~~Rl~~lP~IvG~LLaGILLGP~gLgli~~~~~~~~LaeLGL~~LLF~aGLEldl~~Lrr 679 (1173)
...+..++++++++.+++.+++|+ ++|+++|||++|+++||+++|++++.+..+.++++|++++||.+|+|+|++.+++
T Consensus 5 ~~~~~~~~~~l~~a~~~~~l~~rl-~~P~ivg~IlaGillGp~~lg~~~~~~~~~~la~lGli~llF~~Gle~d~~~l~~ 83 (558)
T PRK10669 5 TPLITTIVGGLVLAFILGMLANRL-RISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMA 83 (558)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHHHHHHhHhcCCHHHHHH
Confidence 344566688888899999999999 9999999999999999999999877778899999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHHHHHHHHhcCCCCCchhHHHHHHHhhhhHHHH
Q 001051 680 MKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVV 759 (1173)
Q Consensus 680 ~~k~il~La~~~vllt~~~vgll~~~llGls~~~ALlLGaiLS~TSpaVVv~vL~elg~l~s~~grl~Ls~sllnDi~aI 759 (1173)
.++..+..+..+++++++ ++++.++.+|+++..++++|++++.||+++++++++|++..+++.|++++++++++|++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~l~~~~~~Dl~~i 162 (558)
T PRK10669 84 VKSIAIPGAIAQIAVATL-LGMALSAVLGWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLVMV 162 (558)
T ss_pred HhhHHHHHHHHHHHHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHHHHHHHHHHHHHH
Confidence 987777777777777654 5566667889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH-
Q 001051 760 VLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLL- 838 (1173)
Q Consensus 760 vlf~ll~~la~~~s~g~~~~~~i~~~Lgl~ll~iil~ill~llig~~llrpil~~l~~~~~~el~~l~vLal~lg~~~l- 838 (1173)
+++.++..+......+......+...+...++..++.+++.+++++++.++++++..+.+..+.+++.++++++++++.
T Consensus 163 ~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~~l~~~l~~a~~~ 242 (558)
T PRK10669 163 LTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATGSRELFTLSVLALALGIAFGA 242 (558)
T ss_pred HHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence 9988776554321111111111111222222333344444455566666777777665566777777777777777754
Q ss_pred HHHhchhHHHHHHHHHHhhcccchhHHHHHhHhhHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 001051 839 TARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVAL 918 (1173)
Q Consensus 839 ae~lGLS~vLGAFvAGLiLsn~~~~~~l~e~l~~~~~~LlpiFFv~iGm~Idl~~L~~~~~lilllvvllvv~K~l~v~l 918 (1173)
++.+|+|+++|||++|+++++.++.+++.+...+++++|+|+||+++|+++|+..+...+..++.++++.+++|++++++
T Consensus 243 ~~~lGls~~lGAflaGl~l~~~~~~~~~~~~~~~~~~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~~~~~~ 322 (558)
T PRK10669 243 VELFDVSFALGAFFAGMVLNESELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKSLAAFF 322 (558)
T ss_pred HHHcCccHHHHHHHHHHHHhCChhHHHHHHHHhhHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999988888888888889999999999999999999988776655566667778999999999
Q ss_pred HHHhcCCChhhhhhhhhcccCCcchhhHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhcccc--
Q 001051 919 VGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGISMALTPWLAAGGQLIASRFEQHDVR-- 996 (1173)
Q Consensus 919 ~~~l~g~~~real~lGl~LaprGevalvla~lAl~~giis~el~silvlvVvlS~iItPiL~~~~~~La~rl~~~~~r-- 996 (1173)
.++++|.++++++.+|+.|+++|+++++++..+.+.|.++++.|.++++++++|++++|++.++..++..+......+
T Consensus 323 ~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~~~~~~~~~~~~~~~~~ 402 (558)
T PRK10669 323 LVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTLLERYLAKTETLEEQTL 402 (558)
T ss_pred HHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhcccccc
Confidence 999999999999999999999999999999999999999999999999999999999999998876665554321111
Q ss_pred -c-cCCCccccccccccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCcccc
Q 001051 997 -S-LLPVESETDDLQDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERA 1074 (1173)
Q Consensus 997 -~-~~p~e~~~~~lk~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A 1074 (1173)
+ ....+..+.++++|++|||+|++|+.+++.|.++|++|++||.|+++++++++.|+++++||++|+++|+++++++|
T Consensus 403 ~~~~~~~~~~~~~~~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a 482 (558)
T PRK10669 403 EEAIEEEKQIPVDICNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCA 482 (558)
T ss_pred ccccccccccccccCCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCcccc
Confidence 0 00111223466899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEecCCCcchHHHHHHHHhhCCCceEEEEecChhhHHHHHHCCCCeeecCCcHHHHHHHHHHHHh
Q 001051 1075 CAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDIDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQ 1142 (1173)
Q Consensus 1075 ~~VVi~t~Dd~~Ni~iv~~ar~l~p~~~IIara~d~e~~~~L~~aGAd~VI~p~~~aa~~LA~~vl~~ 1142 (1173)
+.++++++||..|..++.++|+.+|+++|++|++|+++.++++++|+|+|++|+.+.+..+++.+..+
T Consensus 483 ~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar~~~~~~~~~l~~~Gad~vv~p~~~~a~~i~~~l~~~ 550 (558)
T PRK10669 483 RWLLLTIPNGYEAGEIVASAREKRPDIEIIARAHYDDEVAYITERGANQVVMGEREIARTMLELLETP 550 (558)
T ss_pred CEEEEEcCChHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHcCCCEEEChHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999887653
No 4
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=2.1e-42 Score=434.87 Aligned_cols=411 Identities=17% Similarity=0.296 Sum_probs=321.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccC----------chhHHHHHHHHHHHHHHHHhhc
Q 001051 602 SLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRH----------VHGTKAIAEFGVVFLLFNIGLE 671 (1173)
Q Consensus 602 ~Ll~l~lLLl~A~ilg~L~~Rl~~lP~IvG~LLaGILLGP~gLgli~~----------~~~~~~LaeLGL~~LLF~aGLE 671 (1173)
.++.++++++++.+++.+++|+ |+|+++|||++|+++||+++|.++. ...+++++++|++++||.+|+|
T Consensus 44 ~llql~lil~~a~l~~~ll~rl-~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE 122 (832)
T PLN03159 44 FILQLTLVVVTTRLLVFILKPF-RQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVE 122 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-CCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHc
Confidence 3467888888999999999999 9999999999999999999998742 1357899999999999999999
Q ss_pred CChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhCCC------hHHHHHHhhccccCcHHHHHHHHHhcCCCCCchhH
Q 001051 672 LSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLP------GPASIVIGNGLALSSTAVVLQVLQERGESTSRHGR 745 (1173)
Q Consensus 672 ldl~~Lrr~~k~il~La~~~vllt~~~vgll~~~llGls------~~~ALlLGaiLS~TSpaVVv~vL~elg~l~s~~gr 745 (1173)
+|++.+|+.+++.+.+++.++++++++..++.+ ++++. +..++++|++++.||+++++++|+|+|+++++.|+
T Consensus 123 ~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~-~l~~~~~~~~~~~~~l~~g~alS~Ts~pVv~riL~Elkll~s~~Gr 201 (832)
T PLN03159 123 MDISVIRRTGKKALAIAIAGMALPFCIGLAFSF-IFHQVSRNVHQGTFILFLGVALSVTAFPVLARILAEIKLINTELGR 201 (832)
T ss_pred CcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH-HHhhcccccchhHHHHHHHHHHHHhhHHHHHHHHHHcCcccCcHHH
Confidence 999999999999999999999998764333333 22321 23568899999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----c
Q 001051 746 ATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQ-----N 820 (1173)
Q Consensus 746 l~Ls~sllnDi~aIvlf~ll~~la~~~s~g~~~~~~i~~~Lgl~ll~iil~ill~llig~~llrpil~~l~~~~-----~ 820 (1173)
+++++++++|+++|++++++..+.... ..... .+. .++..++.+++..++.||++.|+.++. .
T Consensus 202 laLsaavv~Dl~~~ilLav~~~l~~~~---~~~~~----~l~-----~~l~~~~f~~~~~~v~r~~~~~~~r~~~~~~~~ 269 (832)
T PLN03159 202 IAMSAALVNDMCAWILLALAIALAEND---STSLA----SLW-----VLLSSVAFVLFCFYVVRPGIWWIIRRTPEGETF 269 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC---Ccchh----HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCc
Confidence 999999999999999997775553221 11111 111 111222223334456677777776542 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhhcccchhHHHHHhHhhH-HHHHHHHHHHHHhcccChhhhhhh--
Q 001051 821 AEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPY-RGLLLGLFFMTVGMSIDPKLLLSN-- 897 (1173)
Q Consensus 821 ~el~~l~vLal~lg~~~lae~lGLS~vLGAFvAGLiLsn~~~~~~l~e~l~~~-~~~LlpiFFv~iGm~Idl~~L~~~-- 897 (1173)
.+.++.++++++++++++++.+|+|+++|||++|+++|+.++++.+.++++++ .++|+|+||+++||++|+..+...
T Consensus 270 ~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~~~~~~~l~ekle~~~~~lflPlFFv~vGl~idl~~l~~~~~ 349 (832)
T PLN03159 270 SEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGPAT 349 (832)
T ss_pred ccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHhhheeeHHHhcCchH
Confidence 45566677788888899999999999999999999999988888999999997 799999999999999999887653
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhhcccCCcchhhHHHHHHHhhccchhhhHHHHHHHH-HHHHHHH
Q 001051 898 FPVITGALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLV-GISMALT 976 (1173)
Q Consensus 898 ~~lilllvvllvv~K~l~v~l~~~l~g~~~real~lGl~LaprGevalvla~lAl~~giis~el~silvlvV-vlS~iIt 976 (1173)
|..+++++++.+++|+++++++++++|+++++++.+|++|++||+++++++..+.+.|+++++.|+++++++ ++|++++
T Consensus 350 ~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~~~f~~lVl~avl~T~i~~ 429 (832)
T PLN03159 350 WGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALIT 429 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCchhhhHHHHHHHHHHHHHH
Confidence 334445566678899999999999999999999999999999999999999999999999999999988765 5789999
Q ss_pred HHHHhhhhhHHhhhhhccccccCCCccccccccccccccCCCccHHHHHHHHH
Q 001051 977 PWLAAGGQLIASRFEQHDVRSLLPVESETDDLQDHIILCGFGRVGQIIAQLLS 1029 (1173)
Q Consensus 977 PiL~~~~~~La~rl~~~~~r~~~p~e~~~~~lk~hvIIiG~G~~G~~Ia~~L~ 1029 (1173)
|++.+.++ ..+|...++.|... ...+..+++-.+|+.+...+. .+...++
T Consensus 430 Plv~~ly~-p~rk~~~~~~r~i~-~~~~~~elriL~cv~~~~~v~-~li~Lle 479 (832)
T PLN03159 430 PVVTVVYR-PARRLVGYKRRTIQ-RSKHDAELRMLVCVHTPRNVP-TIINLLE 479 (832)
T ss_pred HHHHHHhC-HHhhhccccccccc-cCCCCCceeEEEEeccCCcHH-HHHHHHH
Confidence 99876554 34555444434332 222344555555555544443 3445443
No 5
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-41 Score=398.13 Aligned_cols=379 Identities=39% Similarity=0.627 Sum_probs=313.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhccccccccc-CchhHHHHHHHHHHHHHHHHhhcCChhH
Q 001051 598 EEEASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIR-HVHGTKAIAEFGVVFLLFNIGLELSVER 676 (1173)
Q Consensus 598 ~~~~~Ll~l~lLLl~A~ilg~L~~Rl~~lP~IvG~LLaGILLGP~gLgli~-~~~~~~~LaeLGL~~LLF~aGLEldl~~ 676 (1173)
+...++..+.++++++.+++++++|+ ++|+++||+++|+++||.+++.+. ..+..++++++|++++||.+|+|+|+++
T Consensus 3 ~~~~~l~~~~iiL~~a~i~~~l~~rl-~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~ 81 (397)
T COG0475 3 MLSLILLQLLILLLVAVILGPLFKRL-GLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELGVVFLLFLIGLEFDLER 81 (397)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHhcCcccccccCCchHHHHHHHHHhHHHHHHHHHHCcCHHH
Confidence 34567888999999999999999999 999999999999999997666554 5577888999999999999999999999
Q ss_pred HHhchhh-HHHHHHHHHHHHHHHHHHHHHH-HhCCChHHHHHHhhccccCcHHHHHHHHHhcCCCCCchhHHHHHHHhhh
Q 001051 677 LSSMKKY-VFGLGSAQVLVTAVVVGLVAHF-VSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQ 754 (1173)
Q Consensus 677 Lrr~~k~-il~La~~~vllt~~~vgll~~~-llGls~~~ALlLGaiLS~TSpaVVv~vL~elg~l~s~~grl~Ls~slln 754 (1173)
+|+++++ .+..+..++..+++ .+....+ ++|++|..++++|.+++.||++++++++.|+|..+++.|++++++++++
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~g~~~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~g~~~l~~~i~~ 160 (397)
T COG0475 82 LKKVGRSVGLGVAQVGLTAPFL-LGLLLLLGILGLSLIAALFLGAALALSSTAIVLKILMELGLLKTREGQLILGALVFD 160 (397)
T ss_pred HHHhchhhhhhHHHHHHHHHHH-HHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 9999999 55555555554433 3322222 5899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 001051 755 DLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILG 834 (1173)
Q Consensus 755 Di~aIvlf~ll~~la~~~s~g~~~~~~i~~~Lgl~ll~iil~ill~llig~~llrpil~~l~~~~~~el~~l~vLal~lg 834 (1173)
|+.++++++++..+..+.+. .... +...+....+..++.+.+++|+.+|++++..+.+.++.++..+++++++
T Consensus 161 Di~~i~lLai~~~l~~~g~~---~~~~----~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~~~~e~~~~~~l~i~l~ 233 (397)
T COG0475 161 DIAAILLLAIVPALAGGGSG---SVGF----ILGLLLAILAFLALLLLLGRYLLPPLFRRVAKTESSELFILFVLLLVLG 233 (397)
T ss_pred HHHHHHHHHHHHHHccCCCc---cHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 99999999988777543211 1111 1122233344444455557899999999999888889999999999999
Q ss_pred HHHHHHHhchhHHHHHHHHHHhhcccchh-HHHHHhHhhHHH-HHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHH
Q 001051 835 TSLLTARAGLSMALGAFLAGLLLAETEFS-LQVESDIAPYRG-LLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGK 912 (1173)
Q Consensus 835 ~~~lae~lGLS~vLGAFvAGLiLsn~~~~-~~l~e~l~~~~~-~LlpiFFv~iGm~Idl~~L~~~~~lilllvvllvv~K 912 (1173)
.+++++.+|+|+++|||+||+++++.+++ ++++++++++.+ +|+|+||+.+||++|+..+..++..+++++.+.+++|
T Consensus 234 ~a~l~e~~gls~ilGAFlaGl~ls~~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~~~~~l~~~~~~i~~K 313 (397)
T COG0475 234 AAYLAELLGLSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLENLLLILLLVALAILGK 313 (397)
T ss_pred HHHHHHHhChhHHHHHHHHHHHhcccccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988 799999999987 9999999999999999999988887778888889999
Q ss_pred HHHHHHHHHhcCCChhhhhhhhhcccCCcchhhHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhHHhh
Q 001051 913 TILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGISMALTPWLAAGGQLIASR 989 (1173)
Q Consensus 913 ~l~v~l~~~l~g~~~real~lGl~LaprGevalvla~lAl~~giis~el~silvlvVvlS~iItPiL~~~~~~La~r 989 (1173)
.+++++.++.+|.+++++...|+.+.++|+++++.++.+.. +.++++.+..++.+ +++.+|+.....+++.++
T Consensus 314 ~~~~~~~~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~~v~~---smi~t~i~~~~~~~~~~~ 386 (397)
T COG0475 314 ILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEALLTAVVIL---SMITTPILPLLTPILLKR 386 (397)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888777 34566666555444 444444443333334443
No 6
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-39 Score=351.12 Aligned_cols=392 Identities=29% Similarity=0.471 Sum_probs=347.0
Q ss_pred hhHHH-HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcCChhHH
Q 001051 599 EEASL-FDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERL 677 (1173)
Q Consensus 599 ~~~~L-l~l~lLLl~A~ilg~L~~Rl~~lP~IvG~LLaGILLGP~gLgli~~~~~~~~LaeLGL~~LLF~aGLEldl~~L 677 (1173)
++.++ ..+..-+.+++++|.+..|+ |+||.+||+++|+++||+..|++.+......++++|++++||-+|++++++++
T Consensus 3 h~tpli~tiv~gl~lAFl~G~lA~rl-rlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelGViLLmFgvGLhfslkdL 81 (408)
T COG4651 3 HDTPLITTIVGGLVLAFLLGALANRL-RLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELGVILLMFGVGLHFSLKDL 81 (408)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhc-CCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhhHHHHHHhcchheeHHHH
Confidence 33444 44555566799999999999 99999999999999999999999888888999999999999999999999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHHHHHHHHhcCCCCCchhHHHHHHHhhhhHH
Q 001051 678 SSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLA 757 (1173)
Q Consensus 678 rr~~k~il~La~~~vllt~~~vgll~~~llGls~~~ALlLGaiLS~TSpaVVv~vL~elg~l~s~~grl~Ls~sllnDi~ 757 (1173)
...+...+..++.+..+.. ..++.+.+++||++...+++|.++|..||++.++.++|++..++..||++++..+++|++
T Consensus 82 Lavk~iAipgAl~qia~at-~lg~gL~~~lgws~~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iAiGwLiveDl~ 160 (408)
T COG4651 82 LAVKAIAIPGALAQIALAT-LLGMGLSSLLGWSFGTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIAIGWLIVEDLA 160 (408)
T ss_pred hhHHHHhcchHHHHHHHHH-HHHhHHHHHcCCCcccceeeeehhhhHHHHHHHHHHHHhccccccCceEEEeehhHHHHH
Confidence 8877766666776666543 366777788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 001051 758 VVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSL 837 (1173)
Q Consensus 758 aIvlf~ll~~la~~~s~g~~~~~~i~~~Lgl~ll~iil~ill~llig~~llrpil~~l~~~~~~el~~l~vLal~lg~~~ 837 (1173)
.++.+++++.+++-....+.++......++....+...++.+++++|+.+.++++.++....++|.|.+.++++++++.+
T Consensus 161 mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~tGsrElf~L~vla~ALgVa~ 240 (408)
T COG4651 161 MVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAATGSRELFTLAVLAIALGVAF 240 (408)
T ss_pred HHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHhh
Confidence 99999998887654444455555566678888888888999999999999999999998888999999999999998865
Q ss_pred -HHHHhchhHHHHHHHHHHhhcccchhHHHHHhHhhHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHHH
Q 001051 838 -LTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILV 916 (1173)
Q Consensus 838 -lae~lGLS~vLGAFvAGLiLsn~~~~~~l~e~l~~~~~~LlpiFFv~iGm~Idl~~L~~~~~lilllvvllvv~K~l~v 916 (1173)
.++.+|+|+.+|||++|+++++++.+++..+..-|+++.|..+||+.+||..||..+.+....++..+.+.+.+|-+..
T Consensus 241 Ga~~LfgvsfaLGAffaGMvL~eselshraa~~slpLrdaFaVlFFvsVGmlf~P~~l~~~pl~vlatllii~~gKs~aa 320 (408)
T COG4651 241 GAAELFGVSFALGAFFAGMVLAESELSHRAAEDSLPLRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLLIILFGKSVAA 320 (408)
T ss_pred ccceeeccchhHHHHHHHHHhcchhhhHHHHHhccCHHHHHHHHHHHHhhhhcCcHHhhcchHHHHHHHHHHHhhhHHHH
Confidence 4689999999999999999999999999999999999999999999999999999988766656677778889999999
Q ss_pred HHHHHhcCCChhhhhhhhhcccCCcchhhHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhh
Q 001051 917 ALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGISMALTPWLAAGGQLIASRFEQ 992 (1173)
Q Consensus 917 ~l~~~l~g~~~real~lGl~LaprGevalvla~lAl~~giis~el~silvlvVvlS~iItPiL~~~~~~La~rl~~ 992 (1173)
+...+.+|.|.++++.++..+++.|||+++++..+...+.+++....+++...+.++++.|+++.+..+..++.+.
T Consensus 321 f~ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp~~gr~LvlagailsIl~nPllf~~~dr~~~~~e~ 396 (408)
T COG4651 321 FFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPEAGRDLVLAGAILSILLNPLLFALLDRYQRSAEW 396 (408)
T ss_pred HHHHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhh
Confidence 9999999999999999999999999999999999999999999889999999999999999999887766555443
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=5.5e-38 Score=382.56 Aligned_cols=373 Identities=21% Similarity=0.222 Sum_probs=304.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhccccccccc--CchhHHHHHHHHHHHHHHHHhhcCChhHHH
Q 001051 601 ASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIR--HVHGTKAIAEFGVVFLLFNIGLELSVERLS 678 (1173)
Q Consensus 601 ~~Ll~l~lLLl~A~ilg~L~~Rl~~lP~IvG~LLaGILLGP~gLgli~--~~~~~~~LaeLGL~~LLF~aGLEldl~~Lr 678 (1173)
..++.++++++++.+++.+++|+ ++|.+++|+++|+++||.++|.++ +.+..+.++++|++++||.+|+++|++.+|
T Consensus 6 ~~ll~~~~ll~l~~~~~~l~~r~-~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~ 84 (562)
T PRK05326 6 SLLLIGALLLLLSILASRLSSRL-GIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFR 84 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHH
Confidence 45677888999999999999999 999999999999999999999653 345678999999999999999999999999
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHHHHHHHHhcCC-CCCchhHHHHHHHhhhhHH
Q 001051 679 SMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGE-STSRHGRATFSVLLFQDLA 757 (1173)
Q Consensus 679 r~~k~il~La~~~vllt~~~vgll~~~llGls~~~ALlLGaiLS~TSpaVVv~vL~elg~-l~s~~grl~Ls~sllnDi~ 757 (1173)
+.+++++.+++.+++++++++++++++++|++|..++++|+++++||++++.+++++.++ .+++.++++.+++++||.+
T Consensus 85 ~~~~~~~~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~~~l~~eS~~nD~~ 164 (562)
T PRK05326 85 PALGPALSLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVASTLEIESGSNDPM 164 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCchHHHHHHHhccCCCcchhHHhHhhhhhhcccHH
Confidence 999999999999999999988999999999999999999999999999999999999994 6889999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 001051 758 VVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSL 837 (1173)
Q Consensus 758 aIvlf~ll~~la~~~s~g~~~~~~i~~~Lgl~ll~iil~ill~llig~~llrpil~~l~~~~~~el~~l~vLal~lg~~~ 837 (1173)
+++++.++..+..... .+..+. .+..++...++++++++++++ +..+++++.. ....+.+.++++++++++++
T Consensus 165 ai~l~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~g~~~G~~~g~-l~~~l~~~~~-~~~~~~~~i~~l~~~l~~~~ 237 (562)
T PRK05326 165 AVFLTITLIELITGGE-TGLSWG----FLLLFLQQFGLGALIGLLGGW-LLVQLLNRIA-LPAEGLYPILVLAGALLIFA 237 (562)
T ss_pred HHHHHHHHHHHHhCCC-CcchHH----HHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcc-CchhhHHHHHHHHHHHHHHH
Confidence 9988765544332211 111111 122333344455555555553 3455555552 22345566677888999999
Q ss_pred HHHHhchhHHHHHHHHHHhhcccc--hhHHHHHhHhhHHHHHHHHHHHHHhcccChhhhhhhhhhH-HHHHHHHHHHHHH
Q 001051 838 LTARAGLSMALGAFLAGLLLAETE--FSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVI-TGALGLLIGGKTI 914 (1173)
Q Consensus 838 lae~lGLS~vLGAFvAGLiLsn~~--~~~~l~e~l~~~~~~LlpiFFv~iGm~Idl~~L~~~~~li-lllvvllvv~K~l 914 (1173)
+++.+|+|+++|+|++|++++|.+ ..+.+.+..+.+..++.|+||+++|+.+++..+.+.++.. ++.+++.+++|++
T Consensus 238 ~a~~lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~~~~~l~i~~~l~~vaR~l 317 (562)
T PRK05326 238 LTAALGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDIALPALLLALFLILVARPL 317 (562)
T ss_pred HHHHHCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999875 3445566666677899999999999999998887644333 3334556789999
Q ss_pred HHHHHHHhcCCChhhhhhhhhcccCCcchhhHHHHHHHhhccch-hhhHHHHHHHHHHHHHHHHHHHhh
Q 001051 915 LVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMS-SQLSSLLFLLVGISMALTPWLAAG 982 (1173)
Q Consensus 915 ~v~l~~~l~g~~~real~lGl~LaprGevalvla~lAl~~giis-~el~silvlvVvlS~iItPiL~~~ 982 (1173)
++++..+.+++++++++.+++. .+||.++++++..+...+..+ +.++.++++++++|+++.++....
T Consensus 318 ~v~l~~~~~~~~~~e~~~i~~~-g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~~ 385 (562)
T PRK05326 318 AVFLSLLPFRFNLREKLFISWV-GLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLPW 385 (562)
T ss_pred HHHHHHccCCCCHhhhheeeee-cchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhhHHH
Confidence 9999999999999999999996 799999999999999888775 567888889999999998776653
No 8
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=3.8e-37 Score=357.10 Aligned_cols=363 Identities=30% Similarity=0.470 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCc-hhHHHHHHHHHHHHHHHHhhcCChhHHHhchhhHHHH
Q 001051 609 LLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHV-HGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGL 687 (1173)
Q Consensus 609 LLl~A~ilg~L~~Rl~~lP~IvG~LLaGILLGP~gLgli~~~-~~~~~LaeLGL~~LLF~aGLEldl~~Lrr~~k~il~L 687 (1173)
+++.+.+.+.+++|+ ++|++++|+++|+++||.+++++++. ...+.+.++|+++++|.+|+|+|++.+|+.+++.+.+
T Consensus 4 li~~~~~~~~l~~r~-~iP~~i~~i~~Gi~lg~~~~~~~~~~~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~~ 82 (380)
T PF00999_consen 4 LILLAFVAGILFRRL-GIPSIIGYILVGIVLGPSGLGLLEPDNPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRALAL 82 (380)
T ss_dssp ---------------------------------------------S-SSHHHHS--SSHHHHTTGGGG------------
T ss_pred EeehHHHHHHHHHHh-CCCHHHHHHHheeehhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHhhccccccccccccccc
Confidence 344466666689999 99999999999999999999977765 7889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH---HhCCChHHHHHHhhccccCcHHHHHHHHHhcCCCCCchhHHHHHHHhhhhHHHHHHHHH
Q 001051 688 GSAQVLVTAVVVGLVAHF---VSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLIL 764 (1173)
Q Consensus 688 a~~~vllt~~~vgll~~~---llGls~~~ALlLGaiLS~TSpaVVv~vL~elg~l~s~~grl~Ls~sllnDi~aIvlf~l 764 (1173)
++.+++++++++++.+++ ..|+++..++++|.++++|||+++.++++|.+..+++.++++.+++++||+++++++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~d~~~i~~~~~ 162 (380)
T PF00999_consen 83 GLVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESVINDIIAIILLSI 162 (380)
T ss_dssp -------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTTTTTTTTTTTT--
T ss_pred ccceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhchhhccchhhhhhh
Confidence 999999998876777774 57999999999999999999999999998888889999999999999999999988866
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHHHHHHHHHHHh
Q 001051 765 IPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAEN--QNAEIFSANTLLVILGTSLLTARA 842 (1173)
Q Consensus 765 l~~la~~~s~g~~~~~~i~~~Lgl~ll~iil~ill~llig~~llrpil~~l~~~--~~~el~~l~vLal~lg~~~lae~l 842 (1173)
+....... ..... ...+...+...+++++++ ++.+++.+++.++ +..+.....++++++..+++++.+
T Consensus 163 ~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~ 232 (380)
T PF00999_consen 163 LISLAQAS--GQSSL---GQLLLSFLWIILIGIVIG-----LLFGWLLRRLIRRASPSSEIFILLVLALILLLYGLAEIL 232 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhccc--ccccc---cchhcchhhhhhhheeee-----cccchHHHHhhhhccccchhhHHHHHHHHhhhccccccc
Confidence 54443111 11111 111111111122222222 2233344444444 455666667788999999999999
Q ss_pred chhHHHHHHHHHHhhcccchhHHHHHhHhhHH-HHHHHHHHHHHhcccChhhhh---hhhhhHHHHHHHHHHHHHHHHHH
Q 001051 843 GLSMALGAFLAGLLLAETEFSLQVESDIAPYR-GLLLGLFFMTVGMSIDPKLLL---SNFPVITGALGLLIGGKTILVAL 918 (1173)
Q Consensus 843 GLS~vLGAFvAGLiLsn~~~~~~l~e~l~~~~-~~LlpiFFv~iGm~Idl~~L~---~~~~lilllvvllvv~K~l~v~l 918 (1173)
|+|+++|+|++|+++++.+..+++.+++++++ +++.|+||+++|+++|++.+. ..+...+.+++..+++|++++++
T Consensus 233 g~s~~l~af~~Gl~~~~~~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~~~~~ 312 (380)
T PF00999_consen 233 GLSGILGAFIAGLILSNSPFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGKFIGVYL 312 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccceeeeeehccccccccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhhhceeeh
Confidence 99999999999999998888888999999997 999999999999999988873 34555556666677899999999
Q ss_pred HHHhcCCChhhhhhhhhcccCCcchhhHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHhh
Q 001051 919 VGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGISMALTPWLAAG 982 (1173)
Q Consensus 919 ~~~l~g~~~real~lGl~LaprGevalvla~lAl~~giis~el~silvlvVvlS~iItPiL~~~ 982 (1173)
..++.|.++++++.+|+.+.+||+++++++..+.+.|.++++.+.+++.++++|++++|+..+.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~~ 376 (380)
T PF00999_consen 313 ASRLFGIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILSP 376 (380)
T ss_dssp ----------HHHHTTTTSS--HHHHHHHHHHHHH-----------------------------
T ss_pred hhhhcccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998887653
No 9
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=100.00 E-value=3.8e-32 Score=302.82 Aligned_cols=272 Identities=48% Similarity=0.789 Sum_probs=230.1
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcCChhHHHhchhhHHHHHHH
Q 001051 611 LASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSA 690 (1173)
Q Consensus 611 l~A~ilg~L~~Rl~~lP~IvG~LLaGILLGP~gLgli~~~~~~~~LaeLGL~~LLF~aGLEldl~~Lrr~~k~il~La~~ 690 (1173)
+++.+++.+++|+ ++|++++++++|+++||+++|.+++.+..+.++++|+.+++|.+|+|+|++.+|+++++++.+++.
T Consensus 2 ~~a~~~~~l~~~l-~lP~~v~~il~GillGp~~lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~ 80 (273)
T TIGR00932 2 LAAVLAVPLSRRL-GIPSVLGYLLAGVLIGPSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFGVGVL 80 (273)
T ss_pred cHHHHHHHHHHHh-CCCHHHHHHHHHHHhCcccccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 4577889999999 999999999999999999999888778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHHHHHHHHhcCCCCCchhHHHHHHHhhhhHHHHHHHHHHHHHhc
Q 001051 691 QVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISP 770 (1173)
Q Consensus 691 ~vllt~~~vgll~~~llGls~~~ALlLGaiLS~TSpaVVv~vL~elg~l~s~~grl~Ls~sllnDi~aIvlf~ll~~la~ 770 (1173)
+++++++++++.+++++|+++..++++|+++++||+++++++++|++..+++.|+++++++++||+.+++++.++.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~~i~~l~~~~~~~~ 160 (273)
T TIGR00932 81 QVLVPGVLLGLLLGHLLGLALGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLLAT 160 (273)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999777888777889999999999999999999999999999999999999999999999999999999877765543
Q ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhchhHHHHH
Q 001051 771 NSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGA 850 (1173)
Q Consensus 771 ~~s~g~~~~~~i~~~Lgl~ll~iil~ill~llig~~llrpil~~l~~~~~~el~~l~vLal~lg~~~lae~lGLS~vLGA 850 (1173)
.. ......+ ....+..++++++.+++++|+.+++.++..+.+..+.++..++.++++.+++++.+|+|+++|+
T Consensus 161 ~~---~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~la~~~g~s~~lga 233 (273)
T TIGR00932 161 SA---STEHVAL----ALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELRPSELFTAGSLLLMFGSAYFADLLGLSMALGA 233 (273)
T ss_pred CC---CcchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 21 1111111 1122233333333444555666666666655445677777788888999999999999999999
Q ss_pred HHHHHhhcccchhHHHHHhHhhHHHHHHHHHHHHHhcccC
Q 001051 851 FLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSID 890 (1173)
Q Consensus 851 FvAGLiLsn~~~~~~l~e~l~~~~~~LlpiFFv~iGm~Id 890 (1173)
|++|+++++.+.++.+.++++++.++|.|+||+++|+++|
T Consensus 234 f~aGl~~~~~~~~~~l~~~l~~~~~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 234 FLAGVVLSESEYRHKLESDLEPIGGVLLPLFFISVGMSVD 273 (273)
T ss_pred HHHHHHHcCCchHHHHHHHHHhHHHHHHHHHHHHhCccCC
Confidence 9999999998888889999999999999999999999986
No 10
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=100.00 E-value=1.6e-30 Score=316.98 Aligned_cols=348 Identities=16% Similarity=0.075 Sum_probs=261.9
Q ss_pred HHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCch------hHHHHHHHHHHHHHHHHhhcCChh
Q 001051 603 LFDVLWLLLA-SVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVH------GTKAIAEFGVVFLLFNIGLELSVE 675 (1173)
Q Consensus 603 Ll~l~lLLl~-A~ilg~L~~Rl~~lP~IvG~LLaGILLGP~gLgli~~~~------~~~~LaeLGL~~LLF~aGLEldl~ 675 (1173)
+..++.++++ +++..++-+|+ .+|..+.++++|+++||+++|+++... ..-.+.++++++++|.+|++++++
T Consensus 15 ~~~lG~~lll~~l~s~~lkeRl-~Ls~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~ 93 (810)
T TIGR00844 15 YSCVGIFSSIFSLVSLFVKEKL-YIGESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRK 93 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc-CCcHHHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 3444444444 44444555588 899999999999999999998775332 122388999999999999999999
Q ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHHHHHH-hCCChHHHHHHhhccccCcHHHHHHHHH---hcCCCCCchhHHHHHHH
Q 001051 676 RLSSMKKYVFGLGSAQVLVTAVVVGLVAHFV-SGLPGPASIVIGNGLALSSTAVVLQVLQ---ERGESTSRHGRATFSVL 751 (1173)
Q Consensus 676 ~Lrr~~k~il~La~~~vllt~~~vgll~~~l-lGls~~~ALlLGaiLS~TSpaVVv~vL~---elg~l~s~~grl~Ls~s 751 (1173)
.+++.|+.++.+++++++++++++++++|++ +|++|..|+++|+++++|+|+.+..+++ ..+ .+.++..++.+++
T Consensus 94 ~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPVLAssV~kg~~~~r-vP~rLR~lL~~ES 172 (810)
T TIGR00844 94 YMLKHWVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPVLAQSVVSGTFAQK-VPGHLRNLLSCES 172 (810)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHHHHHHHHhcccccc-CChHHHhHHhhhh
Confidence 9999999999999999999999999999887 6999999999999999999999999987 333 4778889999999
Q ss_pred hhhhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--chhHHHHHHH
Q 001051 752 LFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQ--NAEIFSANTL 829 (1173)
Q Consensus 752 llnDi~aIvlf~ll~~la~~~s~g~~~~~~i~~~Lgl~ll~iil~ill~llig~~llrpil~~l~~~~--~~el~~l~vL 829 (1173)
.+||.++++++.+...+......++..... +.+..+++.+++++++|+++|+ +..++++|+.++. ..+.+..+.+
T Consensus 173 GlNDGlAfpfv~LaL~ll~~~~~g~~~~~~--w~l~~~L~~i~~GiliG~vvG~-l~~~Ll~~l~rr~~i~~esfla~~L 249 (810)
T TIGR00844 173 GCNDGLAFPFVFLSMDLLLYPGRGGEIVKD--WICVTILWECIFGSILGCIIGY-CGRKAIRFAEGKNIIDRESFLAFYL 249 (810)
T ss_pred hcccHHHHHHHHHHHHHHhccCccccchhh--HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcccchhHHHHHHH
Confidence 999999987765443332211111111111 1234455667777777787775 4456667665443 4455666677
Q ss_pred HHHHHHHHHHHHhchhHHHHHHHHHHhhcccch-hHHH--HHhHhhHHHHHHHHHHHHHhcccChhhhhh------hhhh
Q 001051 830 LVILGTSLLTARAGLSMALGAFLAGLLLAETEF-SLQV--ESDIAPYRGLLLGLFFMTVGMSIDPKLLLS------NFPV 900 (1173)
Q Consensus 830 al~lg~~~lae~lGLS~vLGAFvAGLiLsn~~~-~~~l--~e~l~~~~~~LlpiFFv~iGm~Idl~~L~~------~~~l 900 (1173)
+++++++.+++.+|.+++|++|+||+++++... .... ....+.+..++..++|+++|+.+.+..+.. .|..
T Consensus 250 aLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~~~w~~ 329 (810)
T TIGR00844 250 ILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGLDVWRL 329 (810)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhhHHHHHH
Confidence 888888999999999999999999999998542 2111 112223456889999999999998776642 3455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc--CCChhhhhhhhhcccCCcchhhHHHHHHHhhcc
Q 001051 901 ITGALGLLIGGKTILVALVGRLF--GVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGI 956 (1173)
Q Consensus 901 illlvvllvv~K~l~v~l~~~l~--g~~~real~lGl~LaprGevalvla~lAl~~gi 956 (1173)
+++.++++++.|++++++...+. ..+|++++++||. .|||..++.++.++...+.
T Consensus 330 ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigWF-GpRGIGSIyyl~~A~~~~~ 386 (810)
T TIGR00844 330 IILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGHF-GPIGVGAVFAAILSKSQLE 386 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHheee-ccccHHHHHHHHHHHHhhh
Confidence 55666677888988888764443 4689999999995 9999999999999887754
No 11
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.97 E-value=2.5e-28 Score=295.16 Aligned_cols=358 Identities=17% Similarity=0.151 Sum_probs=249.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcCChhHHHhchhhHHH
Q 001051 607 LWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFG 686 (1173)
Q Consensus 607 ~lLLl~A~ilg~L~~Rl~~lP~IvG~LLaGILLGP~gLgli~~~~~~~~LaeLGL~~LLF~aGLEldl~~Lrr~~k~il~ 686 (1173)
..+++++..+..+++|+ ++|++++++++|+++||..++. ......+.+..++++++||.+|+++|++.+|++++.++.
T Consensus 4 ~~l~~~~~~~~~l~~r~-~lP~~v~lil~Gi~lg~~~~~~-~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~ 81 (525)
T TIGR00831 4 IELVMLATAVAVTVKFI-RLPYPIALILAGLLLGLAGLLP-EVPLDREIVLFLFLPPLLFEAAMNTDLRELRENFRPIAL 81 (525)
T ss_pred HHHHHHHHHHHHHhccc-CCCHHHHHHHHHHHHHhccccC-CCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34455566667888898 9999999999999999864432 112234567779999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHHHHHHHHhcCCCCCchhHHHHHHHhhhhHHHHHHHHHHH
Q 001051 687 LGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIP 766 (1173)
Q Consensus 687 La~~~vllt~~~vgll~~~llGls~~~ALlLGaiLS~TSpaVVv~vL~elg~l~s~~grl~Ls~sllnDi~aIvlf~ll~ 766 (1173)
+++.+++++++++++++++++|++|..++++|+++++|||+++.+++++.+. +++..+++.+++++||..++++|.+..
T Consensus 82 la~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav~~il~~~~~-p~rl~~il~gESllND~~alvlf~~~~ 160 (525)
T TIGR00831 82 IAFLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAVLGTFKSIRA-PKKLSILLEGESLLNDGAALVVFAIAV 160 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHHHHHHhcCCC-CHHHHHHHhhhhhhcchHHHHHHHHHH
Confidence 9999999999999999998899999999999999999999999999999776 778899999999999999999997665
Q ss_pred HHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhchhH
Q 001051 767 LISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSM 846 (1173)
Q Consensus 767 ~la~~~s~g~~~~~~i~~~Lgl~ll~iil~ill~llig~~llrpil~~l~~~~~~el~~l~vLal~lg~~~lae~lGLS~ 846 (1173)
.+..+. +..+.. ..+..++...++++++++++|+.. .+++++.. +.+.....+++++++++|++++.+|+|+
T Consensus 161 ~~~~~~--~~~~~~---~~~~~f~~~~~~gi~vG~~~g~~~-~~l~~~~~--~~~~~~~~l~l~~~~~~y~lAe~lg~Sg 232 (525)
T TIGR00831 161 AVALGK--GVFDPL---NAALDFAVVCVGGIAAGLAVGYLA-YRLLRAKI--DDPLVEIALTILAPFAGFLLAERFHFSG 232 (525)
T ss_pred HHHhcC--CCCcHH---HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhc--cccHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 444321 112221 123333444555666666666443 33443322 2333445567888999999999999999
Q ss_pred HHHHHHHHHhhcccchh----HH----HHHhHhhHHHHHHHHHHHHHhcccChhhhhhhh------h--h-------HHH
Q 001051 847 ALGAFLAGLLLAETEFS----LQ----VESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNF------P--V-------ITG 903 (1173)
Q Consensus 847 vLGAFvAGLiLsn~~~~----~~----l~e~l~~~~~~LlpiFFv~iGm~Idl~~L~~~~------~--l-------ill 903 (1173)
++|+|++|+++++.... .+ .....+.+..++.+++|+++|+.++. .+.+.| + . .++
T Consensus 233 ilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (525)
T TIGR00831 233 VIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPG-TIFSAWKEILVAPAAVILALFTNAFV 311 (525)
T ss_pred HHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999999999985321 22 22333445678899999999999853 222111 0 0 111
Q ss_pred HHHHHHHHHHHHHHHHH--Hh-----cCCChhhhhhhhhcccCCcchhhHHHHH-HHh--hcc-c--hhhhHHHHHHHHH
Q 001051 904 ALGLLIGGKTILVALVG--RL-----FGVSVISAIRTGLLLAPGGEFAFVAFGE-AVN--QGI-M--SSQLSSLLFLLVG 970 (1173)
Q Consensus 904 lvvllvv~K~l~v~l~~--~l-----~g~~~real~lGl~LaprGevalvla~l-Al~--~gi-i--s~el~silvlvVv 970 (1173)
+.......|++.++... +. .+++|++.+.++|. .+||.+++.++.. ... .|. . .+.+..+.+.+++
T Consensus 312 i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w~-G~RG~vslA~al~~p~~~~~g~~~p~r~~i~~~~~~vVl 390 (525)
T TIGR00831 312 IYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSWA-GLRGAIPLALALSFPNQLLSGMAFPARYELVFLAAGVIL 390 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHheec-cchHHHHHHHHHHccccccCCCCCchHHHHHHHHHHHHH
Confidence 11223345554433321 11 24678999999886 7899998876542 111 111 1 1334444445566
Q ss_pred HHHHHHH
Q 001051 971 ISMALTP 977 (1173)
Q Consensus 971 lS~iItP 977 (1173)
+|.++..
T Consensus 391 ~TllvqG 397 (525)
T TIGR00831 391 FSLLVQG 397 (525)
T ss_pred HHHHHHH
Confidence 6666643
No 12
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1e-29 Score=316.60 Aligned_cols=416 Identities=20% Similarity=0.274 Sum_probs=320.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccC----------chhHHHHHHHHHHHHHHHHhh
Q 001051 601 ASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRH----------VHGTKAIAEFGVVFLLFNIGL 670 (1173)
Q Consensus 601 ~~Ll~l~lLLl~A~ilg~L~~Rl~~lP~IvG~LLaGILLGP~gLgli~~----------~~~~~~LaeLGL~~LLF~aGL 670 (1173)
..++.+.++++++.++..+++++ |+|.++.++++||++||+.+|.... ....+.++.+|..+++|..|+
T Consensus 23 l~~lq~~~i~~~~~~~~~~l~pl-~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~~~l~~~~~lg~~~f~Fl~gl 101 (769)
T KOG1650|consen 23 LLLLQIILIIVLSRLLHILLKPL-GQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSMIVLELLANLGFLFFLFLMGL 101 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHhcchHhhccChhhhhcccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888888899999999999 9999999999999999999887631 234689999999999999999
Q ss_pred cCChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHh-----CC-----ChHHHHHHhhccccCcHHHHHHHHHhcCCCC
Q 001051 671 ELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVS-----GL-----PGPASIVIGNGLALSSTAVVLQVLQERGEST 740 (1173)
Q Consensus 671 Eldl~~Lrr~~k~il~La~~~vllt~~~vgll~~~ll-----Gl-----s~~~ALlLGaiLS~TSpaVVv~vL~elg~l~ 740 (1173)
++|.+.+++.+++...+++.++++++.....+...+. .. .+..-..++.+.+.|+.+++..+|.|+++++
T Consensus 102 ~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~tsfpv~~~iL~eLkll~ 181 (769)
T KOG1650|consen 102 EIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFILSAQSITSFPVLARILAELKLLN 181 (769)
T ss_pred hhhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHHHHHhhcchhHHHHHHHHHhhchh
Confidence 9999999999999998998888888653222222221 11 1114567788899999999999999999999
Q ss_pred CchhHHHHHHHhhhhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-
Q 001051 741 SRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQ- 819 (1173)
Q Consensus 741 s~~grl~Ls~sllnDi~aIvlf~ll~~la~~~s~g~~~~~~i~~~Lgl~ll~iil~ill~llig~~llrpil~~l~~~~- 819 (1173)
++.||+++++++++|+++|.++.+...+...... ..... + ...+..++..++..++.+|.+.|+.++.
T Consensus 182 se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~--~~~~~----~-----~~~~~~~~~~l~~~~v~~p~~~wi~kr~p 250 (769)
T KOG1650|consen 182 SELGRLALSAAVVNDVAGWILLALALAFSSELKL--SPLRS----V-----WDLVLVIGFVLFLFFVVRPLMKWIIKRTP 250 (769)
T ss_pred chhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCC--cchHH----H-----HHHHHHHHHHHheeeehhhhHHHHhhcCC
Confidence 9999999999999999999888776665433211 11111 1 1112222233445567799999998762
Q ss_pred ----chhHHHHHHHHHHHHHHHHHHHhc-hhHHHHHHHHHHhhccc-chhHHHHHhHhhH-HHHHHHHHHHHHhcccChh
Q 001051 820 ----NAEIFSANTLLVILGTSLLTARAG-LSMALGAFLAGLLLAET-EFSLQVESDIAPY-RGLLLGLFFMTVGMSIDPK 892 (1173)
Q Consensus 820 ----~~el~~l~vLal~lg~~~lae~lG-LS~vLGAFvAGLiLsn~-~~~~~l~e~l~~~-~~~LlpiFFv~iGm~Idl~ 892 (1173)
-.+.++..++..++.++.+++.++ +++.+|+|+.|+++|+. |++..+.++++.+ .++|+|+||+..|++.|+.
T Consensus 251 e~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~llPl~~~~~G~k~di~ 330 (769)
T KOG1650|consen 251 EGKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGLLLPLYFAISGLKTDIS 330 (769)
T ss_pred CCCccccceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHHhhccceeHH
Confidence 223466667787888888888888 88999999999999986 5899999999987 7999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhhcccCCcchhhHHHHHHHhhccchhhhHHHHHHHHHHH
Q 001051 893 LLLSNFPVITGALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGIS 972 (1173)
Q Consensus 893 ~L~~~~~lilllvvllvv~K~l~v~l~~~l~g~~~real~lGl~LaprGevalvla~lAl~~giis~el~silvlvVvlS 972 (1173)
.+.. |......+....++|++++...+.++++|+++++.+|++|+.+|.++++.+..+.+.+.++.+.|.++++.++++
T Consensus 331 ~i~~-~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~~~~~~~~f~~~vl~alv~ 409 (769)
T KOG1650|consen 331 RINK-WGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDRKILSDEGFTVMVLMALVS 409 (769)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhhcCCcccchHHHHHHHHHHH
Confidence 8877 666666777788999999999999999999999999999999999999999999999999999999999988887
Q ss_pred HHHHHHHHhhhhhHHhhhhhccccccCCCccccccccccccccCCCccHHHHHHHHHh
Q 001051 973 MALTPWLAAGGQLIASRFEQHDVRSLLPVESETDDLQDHIILCGFGRVGQIIAQLLSE 1030 (1173)
Q Consensus 973 ~iItPiL~~~~~~La~rl~~~~~r~~~p~e~~~~~lk~hvIIiG~G~~G~~Ia~~L~~ 1030 (1173)
+.++|.+........++...+..+.+... .+...++-..++.+.+.+...+.-....
T Consensus 410 t~I~~~~l~~~y~p~~~~~~y~~~~i~~~-~~~~~Lril~cl~~~~~is~~i~~le~~ 466 (769)
T KOG1650|consen 410 TFITPPLLMFLYDPTRKYHGYKKRGIQHL-KPNSELRILTCLHGPENISGIINLLELS 466 (769)
T ss_pred HhhHHHHHHHhcchhhhcCceEeehhhhc-CCCCceEEEEEecCCCcchHHHHHHHHc
Confidence 77766555433333344433333332221 1234556667777777766555544333
No 13
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.97 E-value=4.4e-27 Score=277.63 Aligned_cols=370 Identities=22% Similarity=0.235 Sum_probs=288.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccC--chhHHHHHHHHHHHHHHHHhhcCChhHHH
Q 001051 601 ASLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRH--VHGTKAIAEFGVVFLLFNIGLELSVERLS 678 (1173)
Q Consensus 601 ~~Ll~l~lLLl~A~ilg~L~~Rl~~lP~IvG~LLaGILLGP~gLgli~~--~~~~~~LaeLGL~~LLF~aGLEldl~~Lr 678 (1173)
..++.+.++++++.+...+.+|+ ++|.++.+++.|++.||.+++.... ....+.+..+++++++|..|+++|++.++
T Consensus 6 ~~~~~~~lil~l~~~~~~~~~~l-~~~~i~~~ll~g~i~g~~~l~~~~~~~~~~~el~~~l~l~ilLf~~g~~l~~~~l~ 84 (429)
T COG0025 6 MLLFLLLLILLLGLLVSVLAGRL-LLPEIPLLLLLGLLGGPPGLNLISPDLELDPELFLVLFLAILLFAGGLELDLRELR 84 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-hhhhhHHHHHHHHHHhhhhhccccccccCChHHHHHHHHHHHHHHhHhcCCHHHHH
Confidence 45577788888899999999999 8999999999999999988887754 44567777999999999999999999999
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHhhccccCcHHHHHHHHHhcCCCCCchhHHHHHHHhhhhHH
Q 001051 679 SMKKYVFGLGSAQVLVTAVVVGLVAHFVS-GLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLA 757 (1173)
Q Consensus 679 r~~k~il~La~~~vllt~~~vgll~~~ll-Gls~~~ALlLGaiLS~TSpaVVv~vL~elg~l~s~~grl~Ls~sllnDi~ 757 (1173)
++++++..+++.+++++++++|++.|+++ ++++..|+++|+++++|||+++.+++++.+. +++..+++.+++++||..
T Consensus 85 ~~~~~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~~i~~~~~v-p~ri~~iL~gESl~ND~~ 163 (429)
T COG0025 85 RVWRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVSPIFKRVRV-PKRIRTILEGESLLNDGV 163 (429)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhHHHHhcCCC-CHHHHHHHHHHHHhhhHH
Confidence 99999999999999999999999999876 6788899999999999999999999999776 889999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHHH
Q 001051 758 VVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQ--NAEIFSANTLLVILGT 835 (1173)
Q Consensus 758 aIvlf~ll~~la~~~s~g~~~~~~i~~~Lgl~ll~iil~ill~llig~~llrpil~~l~~~~--~~el~~l~vLal~lg~ 835 (1173)
++++|.+...+..... ..+ .......++...++++.+|+++|+ +..++++++.++. ........++..+++.
T Consensus 164 giv~f~~~l~~~~~~~--~~~---~~~~~~~fl~~~~~g~~~G~~iG~-l~~~l~~~~~~~~~~~~~~~~~i~L~~~~~~ 237 (429)
T COG0025 164 GIVLFKVALAALLGTG--AFS---LGWALLLFLIEALGGILLGLLLGY-LLGRLLRRLDRRGWTSPLLETLLTLLLAFAA 237 (429)
T ss_pred HHHHHHHHHHHHhccC--CCc---hhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccccchHHHHHHHHHHHHHH
Confidence 9999966554443221 111 123445556667777777777774 4466777776532 3344556678999999
Q ss_pred HHHHHHhchhHHHHHHHHHHhhccc------c--hhHHHHHhHhhHHHHHHHHHHHHHhcccChhhhhhh-hhhHHHHHH
Q 001051 836 SLLTARAGLSMALGAFLAGLLLAET------E--FSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSN-FPVITGALG 906 (1173)
Q Consensus 836 ~~lae~lGLS~vLGAFvAGLiLsn~------~--~~~~l~e~l~~~~~~LlpiFFv~iGm~Idl~~L~~~-~~lilllvv 906 (1173)
|.+++.+|.|++++++++|++.++. + .+....+..+.+..+++.++|+++|++++...+... ++.++++++
T Consensus 238 ~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~~~~~~~l~~~~ 317 (429)
T COG0025 238 YLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLALGLLGLLVALV 317 (429)
T ss_pred HHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHH
Confidence 9999999999999999999988521 1 122233333445668899999999999998877654 566677778
Q ss_pred HHHHHHHHHHHHHHHhcC------CChhhhhhhhhcccCCcchhhHHHHHHHhhcc-c-hhhhHHHHHHHHHHHHHHHHH
Q 001051 907 LLIGGKTILVALVGRLFG------VSVISAIRTGLLLAPGGEFAFVAFGEAVNQGI-M-SSQLSSLLFLLVGISMALTPW 978 (1173)
Q Consensus 907 llvv~K~l~v~l~~~l~g------~~~real~lGl~LaprGevalvla~lAl~~gi-i-s~el~silvlvVvlS~iItPi 978 (1173)
+++++|++++++..+... .++++++++++. ++||.+++.++........ . .+.+..+...++++|.++..+
T Consensus 318 ~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w~-G~RG~vsla~al~~p~~~~~~~~~~i~~i~~~vIl~Sl~v~g~ 396 (429)
T COG0025 318 AVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSWA-GPRGVVSLALALLIPLELPGPARELILFIVFLVILFSLLVQGL 396 (429)
T ss_pred HHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhhc-ccccHHHHHHHHHchhhccchhhhHHHHHHHHHHHHHHHHHhh
Confidence 889999999999998743 789999999986 8999998887665332211 1 223333444555556555443
Q ss_pred H
Q 001051 979 L 979 (1173)
Q Consensus 979 L 979 (1173)
.
T Consensus 397 t 397 (429)
T COG0025 397 T 397 (429)
T ss_pred h
Confidence 3
No 14
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.96 E-value=9.5e-28 Score=270.14 Aligned_cols=365 Identities=20% Similarity=0.229 Sum_probs=297.8
Q ss_pred HHHHHH-HHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhccccccccc--CchhHHHHHHHHHHHHHHHHhhcCChhHHH
Q 001051 602 SLFDVL-WLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIR--HVHGTKAIAEFGVVFLLFNIGLELSVERLS 678 (1173)
Q Consensus 602 ~Ll~l~-lLLl~A~ilg~L~~Rl~~lP~IvG~LLaGILLGP~gLgli~--~~~~~~~LaeLGL~~LLF~aGLEldl~~Lr 678 (1173)
.++.++ ++++++.+...+..|+ +.|-.+.++..|++.|.-|+|.++ +.+....+.++++++|+|..|+.++++.+|
T Consensus 7 ~ill~gsvlvivsif~s~~ssrf-GvP~LllFl~iGm~aG~dGlg~I~fdNy~~Ay~vg~lALaiILfdgG~~T~lss~r 85 (574)
T COG3263 7 LILLLGSVLVIVSIFSSLISSRF-GVPLLLLFLSIGMLAGVDGLGGIEFDNYPFAYMVGNLALAIILFDGGFGTQLSSFR 85 (574)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHcCCCcccccccCccHHHHHHHHHHHHHHhhcCccCCcHHHHH
Confidence 334444 6677788899999999 999999999999999999999665 334567999999999999999999999999
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHHHHHHHHhcCCCCCchhHHHHHHHhhhhHHH
Q 001051 679 SMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAV 758 (1173)
Q Consensus 679 r~~k~il~La~~~vllt~~~vgll~~~llGls~~~ALlLGaiLS~TSpaVVv~vL~elg~l~s~~grl~Ls~sllnDi~a 758 (1173)
...++.+.++++++++|...+|..++|+++++|.+++++|+++..|+.+.|..+|.++++ +.+.+.++.-++.-||-++
T Consensus 86 ~a~~palsLATlGVl~Ts~Ltg~aA~~ll~l~wle~~LiGAiVgSTDAAAVF~lL~~~nl-~erv~stLEiESGtNDPmA 164 (574)
T COG3263 86 VAAGPALSLATLGVLITSGLTGVAAAYLLNLDWLEGLLIGAIVGSTDAAAVFSLLGGKNL-NERVASTLEIESGSNDPMA 164 (574)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhhccccHHHHHHHHccCCh-hhhhhhhEEeecCCCCcee
Confidence 999999999999999999999999999999999999999999999999999999988876 6678888888899999888
Q ss_pred HHHH-HHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 001051 759 VVLL-ILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSL 837 (1173)
Q Consensus 759 Ivlf-~ll~~la~~~s~g~~~~~~i~~~Lgl~ll~iil~ill~llig~~llrpil~~l~~~~~~el~~l~vLal~lg~~~ 837 (1173)
+++- +++..+..+.+ +..+.. +..++....++.++++.+|+.. ..+.+++ +-...++.+++++..+.++.
T Consensus 165 vfLTitlieli~~get--~l~~~~----ll~f~~q~glG~l~G~~gg~l~-~~~Inr~--nLd~GL~pil~la~~Ll~fs 235 (574)
T COG3263 165 VFLTITLIELIAGGET--NLSWGF----LLGFLQQFGLGLLLGLGGGKLL-LQLINRI--NLDSGLYPILALAGGLLIFS 235 (574)
T ss_pred eehhHHHHHHHhcccc--ccCHHH----HHHHHHHhhHHHHHHHHHHHHH-HHHHHhh--ccccchhHHHHHHHHHHHHH
Confidence 7665 44444443311 123222 1223445556666666666543 3444544 22455777788899999999
Q ss_pred HHHHhchhHHHHHHHHHHhhcccc--hhHHHHHhHhhHHHHHHHHHHHHHhcccChhhhhh-hhhhHHHHHHHHHHHHHH
Q 001051 838 LTARAGLSMALGAFLAGLLLAETE--FSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLS-NFPVITGALGLLIGGKTI 914 (1173)
Q Consensus 838 lae~lGLS~vLGAFvAGLiLsn~~--~~~~l~e~l~~~~~~LlpiFFv~iGm~Idl~~L~~-~~~lilllvvllvv~K~l 914 (1173)
++..+|.|+.++++++|++++|.+ .++.+.+..+.+..+...+.|+..|+.+.|..++. .+|.+++.+..++++|++
T Consensus 236 ~t~aiGGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~twlaQI~MFlvLGLLvtPsql~~iavPailL~l~mifvaRP~ 315 (574)
T COG3263 236 LTGAIGGSGILAVYLAGLLLGNRPIRARHGILRFFDGLAWLAQILMFLVLGLLVTPSQLLPIAIPAILLSLWMIFVARPL 315 (574)
T ss_pred HHHHhcCcccHHHHHHHHHhCCCcchhHHHHHHHhccHHHHHHHHHHHHHHHhcCHhhhhHhhHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999987 45667777777888889999999999999999887 345566667777899999
Q ss_pred HHHHHHHhcCCChhhhhhhhhcccCCcchhhHHHHHHHhhccc-hhhhHHHHHHHHHHHHHHHHH
Q 001051 915 LVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIM-SSQLSSLLFLLVGISMALTPW 978 (1173)
Q Consensus 915 ~v~l~~~l~g~~~real~lGl~LaprGevalvla~lAl~~gii-s~el~silvlvVvlS~iItPi 978 (1173)
++|+...-++++++|.++++|. .-||.++++++...+-.|.- +.-.|.+.+++|++|.++..+
T Consensus 316 aV~l~l~Pfrf~~~Ek~fvSWv-GLRGAv~IilAifpm~aglena~l~FNvAF~VVLvSlliQG~ 379 (574)
T COG3263 316 AVFLGLIPFRFNRREKLFVSWV-GLRGAVPIILAIFPMMAGLENARLFFNVAFFVVLVSLLIQGS 379 (574)
T ss_pred HHHHhhcccccCccchheeehh-hcccchhhhHhhhHHhcCCccceEEeehhHHHHHHHHHHccC
Confidence 9999999999999999999885 78999999999988877754 455778999999999888543
No 15
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.95 E-value=8.7e-26 Score=273.79 Aligned_cols=367 Identities=15% Similarity=0.128 Sum_probs=257.0
Q ss_pred HHHHHHHHH--HHHHHHHHHh-cCCCchHHHHHHHHHhhccccccc--cc-CchhHHHHHHHHHHHHHHHHhhcCChhHH
Q 001051 604 FDVLWLLLA--SVIFVPIFQK-IPGGSPVLGYLAAGILIGPYGLSI--IR-HVHGTKAIAEFGVVFLLFNIGLELSVERL 677 (1173)
Q Consensus 604 l~l~lLLl~--A~ilg~L~~R-l~~lP~IvG~LLaGILLGP~gLgl--i~-~~~~~~~LaeLGL~~LLF~aGLEldl~~L 677 (1173)
....+++++ +.+.-.+..| .+++|..+..++.|+++|+...+. .+ .....+.+..+.+++|+|.+|++++.+.+
T Consensus 10 ~~~~~~l~~~~~~~~~~~~~~~~~~lP~s~llil~GlllG~i~~~~~~~~~~~l~~~lf~~~~LPpIlFe~g~~l~~~~f 89 (559)
T TIGR00840 10 EFILWILLASLAKIGFHLTHKVIRAVPESVLLIVYGLLVGGIIKASPHIDPPTLDSSYFFLYLLPPIVLDAGYFMPQRNF 89 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHcCCCCccCCcCHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 333444443 3333344444 446999999999999999753221 22 12346888889999999999999999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHHh--------CCChHHHHHHhhccccCcHHHHHHHHHhcCCCCCchhHHHHH
Q 001051 678 SSMKKYVFGLGSAQVLVTAVVVGLVAHFVS--------GLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFS 749 (1173)
Q Consensus 678 rr~~k~il~La~~~vllt~~~vgll~~~ll--------Gls~~~ALlLGaiLS~TSpaVVv~vL~elg~l~s~~grl~Ls 749 (1173)
+++++.++.+++++++++++++|+.+|++. +++|..++++|+++++|||+++.+++++.+. +.++.+++.+
T Consensus 90 ~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~~v-~~~L~~ll~g 168 (559)
T TIGR00840 90 FENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYHV-NEKLYIIIFG 168 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhcCC-Ccchhhheeh
Confidence 999999999999999999999999888642 4589999999999999999999999999986 7889999999
Q ss_pred HHhhhhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Q 001051 750 VLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTL 829 (1173)
Q Consensus 750 ~sllnDi~aIvlf~ll~~la~~~s~g~~~~~~i~~~Lgl~ll~iil~ill~llig~~llrpil~~l~~~~~~el~~l~vL 829 (1173)
++++||.+++++|.++..+.... .+......+...+..+++..++++++|+++|+.. ..++++....+ .....+++
T Consensus 169 ESllNDavaIVLf~~~~~~~~~~-~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~-~~l~r~~~~~~--~~e~~l~l 244 (559)
T TIGR00840 169 ESLLNDAVTVVLYNTFIKFHKTA-DEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLV-AFITRFTHHIR--QIEPLFVF 244 (559)
T ss_pred hhhhhccHHHHHHHHHHHHHhcC-CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcccc--hhHHHHHH
Confidence 99999999999996665543211 1122222333333333344455666677766543 44455543222 23344568
Q ss_pred HHHHHHHHHHHHhchhHHHHHHHHHHhhccc---chhHH----HHHhHhhHHHHHHHHHHHHHhcccChhhhhhhhhhHH
Q 001051 830 LVILGTSLLTARAGLSMALGAFLAGLLLAET---EFSLQ----VESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVIT 902 (1173)
Q Consensus 830 al~lg~~~lae~lGLS~vLGAFvAGLiLsn~---~~~~~----l~e~l~~~~~~LlpiFFv~iGm~Idl~~L~~~~~lil 902 (1173)
++++++|+++|.+|+|++++++++|+++++. ..+++ +....+.+..++..+.|+++|+.+........|..++
T Consensus 245 ~~~yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~~~~~~~~i~ 324 (559)
T TIGR00840 245 LISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENHEWNWAFVV 324 (559)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 8889999999999999999999999999753 12222 2233444566788999999999763221111344444
Q ss_pred HHHHHHHHHHHHHHHHHHHh------cCCChhhhhhhhhcccCCcchhhHHHHHHHhhcc-chhhhHHHHHHHHHHHHHH
Q 001051 903 GALGLLIGGKTILVALVGRL------FGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGI-MSSQLSSLLFLLVGISMAL 975 (1173)
Q Consensus 903 llvvllvv~K~l~v~l~~~l------~g~~~real~lGl~LaprGevalvla~lAl~~gi-is~el~silvlvVvlS~iI 975 (1173)
+.+++++++|++++++..+. .++++++.+.++++ .+||.+++.++...-..+. -.+.+..+.+.++++|.++
T Consensus 325 ~~l~~~ll~R~l~V~~~~~~~~~~~~~~~~~~e~~il~w~-GlRGaVa~aLAl~l~~~~~~~~~~i~~~t~~VVl~Tvlv 403 (559)
T TIGR00840 325 ATLSFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLVIFYA-GLRGAVAFALALLLDEKIFPYKFLFVTTTLVVVFFTVIF 403 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhheeee-ccccHHHHHHHHhCCCCCcchHHHHHHHHHeeehHHHHH
Confidence 55566678999998877654 35789999988885 7899998877654322221 1244555555556666666
Q ss_pred H
Q 001051 976 T 976 (1173)
Q Consensus 976 t 976 (1173)
-
T Consensus 404 q 404 (559)
T TIGR00840 404 Q 404 (559)
T ss_pred H
Confidence 3
No 16
>PRK10537 voltage-gated potassium channel; Provisional
Probab=99.86 E-value=4e-20 Score=215.94 Aligned_cols=131 Identities=23% Similarity=0.206 Sum_probs=124.0
Q ss_pred cccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchH
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni 1088 (1173)
++|+||||+|+.|+.+++.|.++|+++++||.| ..+...+.|.++++||++|+++|+++|+++|++++++++||+.|+
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d--~~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl 317 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPL--GLEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNA 317 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECc--hhhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHH
Confidence 789999999999999999999999999999987 345666778999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCceEEEEecChhhHHHHHHCCCCeeecCCcHHHHHHHHHHHH
Q 001051 1089 RTVWALSKYFPNVKTFVRAHDIDHGLNLEKAGATAVVPETLEPSLQLAAAVLA 1141 (1173)
Q Consensus 1089 ~iv~~ar~l~p~~~IIara~d~e~~~~L~~aGAd~VI~p~~~aa~~LA~~vl~ 1141 (1173)
.++.++|+++|+++++++++|+++.++++++|+|.||+|...+|..+++.+..
T Consensus 318 ~ivL~ar~l~p~~kIIa~v~~~~~~~~L~~~GaD~VIsp~~l~g~~la~~l~g 370 (393)
T PRK10537 318 FVVLAAKEMSSDVKTVAAVNDSKNLEKIKRVHPDMIFSPQLLGSELLARTLNG 370 (393)
T ss_pred HHHHHHHHhCCCCcEEEEECCHHHHHHHHhcCCCEEECHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999988763
No 17
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.83 E-value=5.9e-19 Score=208.13 Aligned_cols=368 Identities=16% Similarity=0.146 Sum_probs=253.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC---CchHHHHHHHHHhhcccc------ccccc---CchhHHHHHHHHHHHHHHHH
Q 001051 601 ASLFDVLWLLLASVIFVPIFQKIPG---GSPVLGYLAAGILIGPYG------LSIIR---HVHGTKAIAEFGVVFLLFNI 668 (1173)
Q Consensus 601 ~~Ll~l~lLLl~A~ilg~L~~Rl~~---lP~IvG~LLaGILLGP~g------Lgli~---~~~~~~~LaeLGL~~LLF~a 668 (1173)
..++.++.+|+++++.++++++- | +|.-+.-++.|+++|-.. .+-.. .....+.+..+.++.++|+.
T Consensus 35 ~al~~~i~lL~l~iv~~hll~~~-R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~~~ff~vLLPpiif~s 113 (575)
T KOG1965|consen 35 VALLFFILLLVLCIVLGHLLEET-RFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSPDLFFLVLLPPIIFNS 113 (575)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecccHHHHHhhchhhhcc
Confidence 34577777888899999999865 5 999999999999999432 22111 13345688899999999999
Q ss_pred hhcCChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHH------hCCChHHHHHHhhccccCcHHHHHHHHHhcCCCCCc
Q 001051 669 GLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFV------SGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSR 742 (1173)
Q Consensus 669 GLEldl~~Lrr~~k~il~La~~~vllt~~~vgll~~~l------lGls~~~ALlLGaiLS~TSpaVVv~vL~elg~l~s~ 742 (1173)
|.+++.+.+.++...+..+++.++.+++.++|..++++ .++++..++.+|+++|+|+|+.+++++++++. ...
T Consensus 114 gy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliSATDPVtvLaIfnel~v-d~~ 192 (575)
T KOG1965|consen 114 GYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISATDPVTVLAIFNELGV-DPK 192 (575)
T ss_pred cceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhcccCchHHHHHHHHhCC-Ccc
Confidence 99999999999999999999999999988888877765 36789999999999999999999999999987 567
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 001051 743 HGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAE 822 (1173)
Q Consensus 743 ~grl~Ls~sllnDi~aIvlf~ll~~la~~~s~g~~~~~~i~~~Lgl~ll~iil~ill~llig~~llrpil~~l~~~~~~e 822 (1173)
+-.++.|++++||.++|+++..+.......... ......++.++....++..+|+++|.. .--+++.+.-++.+.
T Consensus 193 Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~----~~~~~~ig~Fl~~F~gS~~lGv~~Gli-sA~~lK~~~l~~~~~ 267 (575)
T KOG1965|consen 193 LYTLVFGESVLNDAVSIVLFNTIQKFQLGSLND----WTAFSAIGNFLYTFFGSLGLGVAIGLI-SALVLKFLYLRRTPS 267 (575)
T ss_pred eeeeeecchhccchhHHHHHHHHHHHccCCchh----hhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCcH
Confidence 789999999999999999998776665432211 112234455554555555555555522 222233332223333
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhhcccc---hhHH----HHHhHhhHHHHHHHHHHHHHhccc-Chhhh
Q 001051 823 IFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETE---FSLQ----VESDIAPYRGLLLGLFFMTVGMSI-DPKLL 894 (1173)
Q Consensus 823 l~~l~vLal~lg~~~lae~lGLS~vLGAFvAGLiLsn~~---~~~~----l~e~l~~~~~~LlpiFFv~iGm~I-dl~~L 894 (1173)
.-...++++....|+++|.+|+|++++.+..|+++++.. ++.. ..+.++.+.-+...+.|+++|+.+ +...+
T Consensus 268 lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~~~k~ 347 (575)
T KOG1965|consen 268 LESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFDFQKH 347 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccce
Confidence 444556888999999999999999999999999999742 2222 222333344566888999999743 33322
Q ss_pred hhh-hhhHHHHHHHHHHHHHHHHHHHHHhcCCChhhh----------hhhhhcccCCcchhhHHHHHHH-hhcc-chhhh
Q 001051 895 LSN-FPVITGALGLLIGGKTILVALVGRLFGVSVISA----------IRTGLLLAPGGEFAFVAFGEAV-NQGI-MSSQL 961 (1173)
Q Consensus 895 ~~~-~~lilllvvllvv~K~l~v~l~~~l~g~~~rea----------l~lGl~LaprGevalvla~lAl-~~gi-is~el 961 (1173)
... +..+++..++++++|.+-++....+.+.-.|.. ..+.|.-.-||.+++.++.--. +.+. .+..+
T Consensus 348 ~~~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~~~~~~~~~q~i 427 (575)
T KOG1965|consen 348 VYKSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDFTDSPHTGGQTI 427 (575)
T ss_pred eeechHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhccccccccccEE
Confidence 222 234556667778999999888887765544443 2333333357776666544211 1111 12344
Q ss_pred HHHHHHHHHHHHHH
Q 001051 962 SSLLFLLVGISMAL 975 (1173)
Q Consensus 962 ~silvlvVvlS~iI 975 (1173)
++..+.++++|+++
T Consensus 428 ~tttl~vVlfT~lv 441 (575)
T KOG1965|consen 428 FTTTLVVVLFTVLV 441 (575)
T ss_pred EEeeeeeeeeeeee
Confidence 55555555555544
No 18
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=99.78 E-value=8.1e-19 Score=170.65 Aligned_cols=116 Identities=31% Similarity=0.467 Sum_probs=110.5
Q ss_pred ccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchHHHH
Q 001051 1012 IILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTV 1091 (1173)
Q Consensus 1012 vIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni~iv 1091 (1173)
++|||+|++|+.+++.|.+.+++|++||.|++.++.+++.|+++++||++++++|+++++++|+.++++++||..|+.++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~~ 80 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLIA 80 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHHH
Confidence 58999999999999999998889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCceEEEEecChhhHHHHHHCCCCeeecC
Q 001051 1092 WALSKYFPNVKTFVRAHDIDHGLNLEKAGATAVVPE 1127 (1173)
Q Consensus 1092 ~~ar~l~p~~~IIara~d~e~~~~L~~aGAd~VI~p 1127 (1173)
+.+|+++|+.+++++++++++.+.|+++|+|+||+|
T Consensus 81 ~~~r~~~~~~~ii~~~~~~~~~~~l~~~g~d~vi~P 116 (116)
T PF02254_consen 81 LLARELNPDIRIIARVNDPENAELLRQAGADHVISP 116 (116)
T ss_dssp HHHHHHTTTSEEEEEESSHHHHHHHHHTT-SEEEEH
T ss_pred HHHHHHCCCCeEEEEECCHHHHHHHHHCCcCEEECc
Confidence 999999999999999999999999999999999987
No 19
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.68 E-value=1.1e-14 Score=160.51 Aligned_cols=332 Identities=17% Similarity=0.097 Sum_probs=233.9
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCc------hhHHHHHHHHHHHHHHHHhhcCChhHHHhchhhHHH
Q 001051 613 SVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHV------HGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFG 686 (1173)
Q Consensus 613 A~ilg~L~~Rl~~lP~IvG~LLaGILLGP~gLgli~~~------~~~~~LaeLGL~~LLF~aGLEldl~~Lrr~~k~il~ 686 (1173)
++..-.+-.|+ -+...+.-.+.|+++||+.+++.++. ..+..+..+-+.+=.|.++.|+....+.++|+.++.
T Consensus 26 ~l~S~yikekL-llgEa~va~itGlI~Gphvlnlfdp~~wgn~d~it~ei~RvvLcvqvfava~eLPr~Y~l~~w~Si~v 104 (467)
T KOG4505|consen 26 GLASLYIKEKL-LLGEATVAVITGLIFGPHVLNLFDPNSWGNKDYITYEISRVVLCVQVFAVAMELPRAYMLEHWRSIFV 104 (467)
T ss_pred HHHHHHHHHhH-hccchHHhhhhheeechhhhhhcCCccccCcchhhhhhhhhhHhHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33333333455 45555566789999999999987543 234678888888899999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-CCChHHHHHHhhccccCcHHHHHHHHHhcCC---CCCchhHHHHHHHhhhhHHHHHHH
Q 001051 687 LGSAQVLVTAVVVGLVAHFVS-GLPGPASIVIGNGLALSSTAVVLQVLQERGE---STSRHGRATFSVLLFQDLAVVVLL 762 (1173)
Q Consensus 687 La~~~vllt~~~vgll~~~ll-Gls~~~ALlLGaiLS~TSpaVVv~vL~elg~---l~s~~grl~Ls~sllnDi~aIvlf 762 (1173)
+-..-++.-+++.+.+.|.+. +++...++++++++.+|+|.....++.+.+. .+.++..++.+++..||.+++.++
T Consensus 105 lllpVmi~gwlvs~~fvy~l~p~lnf~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~AESGcNDGMaipfl 184 (467)
T KOG4505|consen 105 LLLPVMIIGWLVSFGFVYALIPNLNFLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLAAESGCNDGMAIPFL 184 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHHHhcCCCCCcchhHH
Confidence 877777777766666666554 8899999999999999999998888865443 344566778889999999999877
Q ss_pred HHHH-HHh-cCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHHHHHH
Q 001051 763 ILIP-LIS-PNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQ--NAEIFSANTLLVILGTSLL 838 (1173)
Q Consensus 763 ~ll~-~la-~~~s~g~~~~~~i~~~Lgl~ll~iil~ill~llig~~llrpil~~l~~~~--~~el~~l~vLal~lg~~~l 838 (1173)
.+.. .+. ...-.++-++. ....++....+.+++.++| |+.|..+++-.+++ ..+.|..+.+++++.+..+
T Consensus 185 flai~Ll~h~~~r~~~rdwv-----~~~iLyec~fg~llG~vIG-~l~r~~lk~aekkrlid~eSfl~~~vvl~lfc~gi 258 (467)
T KOG4505|consen 185 FLAIDLLRHKPRRKAGRDWV-----CDNILYECFFGCLLGCVIG-YLSRQGLKFAEKKRLIDRESFLIFYVVLALFCMGI 258 (467)
T ss_pred HHHHHHHhcCchhccCCcee-----hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhh
Confidence 4432 222 21112222221 2233445666777777777 55676666665443 6778888889999999999
Q ss_pred HHHhchhHHHHHHHHHHhhcccc-hhHHHHH-hHhhH-HHHHHHHHHHHHhcccChhhhhh------hhhhHHHHHHHHH
Q 001051 839 TARAGLSMALGAFLAGLLLAETE-FSLQVES-DIAPY-RGLLLGLFFMTVGMSIDPKLLLS------NFPVITGALGLLI 909 (1173)
Q Consensus 839 ae~lGLS~vLGAFvAGLiLsn~~-~~~~l~e-~l~~~-~~~LlpiFFv~iGm~Idl~~L~~------~~~lilllvvllv 909 (1173)
++.+|++-.+-.|.||++++-.. ++.+..+ .+..+ -.++...||++.|..++.+.+.. .|..+++-+.+.+
T Consensus 259 gtiiGvddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~vwrlvilsi~iif 338 (467)
T KOG4505|consen 259 GTIIGVDDLLVSFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPVWRLVILSITIIF 338 (467)
T ss_pred hheechhHHHHHHHhhhhcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchHHHHHHHHHHHHH
Confidence 99999999999999999999654 4444433 33444 34677889999999999988754 2444444444444
Q ss_pred HHHHHHHHHHHHhc--CCChhhhhhhhhcccCCcchhhHHHHHHH
Q 001051 910 GGKTILVALVGRLF--GVSVISAIRTGLLLAPGGEFAFVAFGEAV 952 (1173)
Q Consensus 910 v~K~l~v~l~~~l~--g~~~real~lGl~LaprGevalvla~lAl 952 (1173)
.-|+..+++.-.+. =.+|||++++|.. .|.|.-++-.+.++.
T Consensus 339 ~RRip~v~l~kp~iPdikswkEALFvGhF-GPIGVgAly~allar 382 (467)
T KOG4505|consen 339 IRRIPAVYLMKPLIPDIKSWKEALFVGHF-GPIGVGALYYALLAR 382 (467)
T ss_pred hcccceEEEeccCCcchhhHHHHHHhccC-CCccHHHHHHHHHHH
Confidence 44555555543332 2379999999984 899877666555554
No 20
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.68 E-value=1.8e-16 Score=172.97 Aligned_cols=133 Identities=29% Similarity=0.339 Sum_probs=125.1
Q ss_pred cccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhh--hCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchH
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGR--ALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~--~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni 1088 (1173)
.++|+|.|++|..+++.|.+.|+.|++||.|++++++.. +.+.+++.||++++++|+++|++++|+++++|++|+.|+
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~N~ 81 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEVNS 81 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHHHH
Confidence 478999999999999999999999999999999998844 479999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCceEEEEecChhhHHHHHHCCCCeeecCCcHHHHHHHHHHHHhc
Q 001051 1089 RTVWALSKYFPNVKTFVRAHDIDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQA 1143 (1173)
Q Consensus 1089 ~iv~~ar~l~p~~~IIara~d~e~~~~L~~aGAd~VI~p~~~aa~~LA~~vl~~l 1143 (1173)
.+++.+++.+.-.++++|++++++.+.+++.|+|++|+|+.+++..+++.+..+-
T Consensus 82 i~~~la~~~~gv~~viar~~~~~~~~~~~~~g~~~ii~Pe~~~~~~l~~~i~~p~ 136 (225)
T COG0569 82 VLALLALKEFGVPRVIARARNPEHEKVLEKLGADVIISPEKLAAKRLARLIVTPG 136 (225)
T ss_pred HHHHHHHHhcCCCcEEEEecCHHHHHHHHHcCCcEEECHHHHHHHHHHHHhcCCC
Confidence 9999999977667999999999999999999999999999999999999887643
No 21
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.64 E-value=4.7e-13 Score=156.32 Aligned_cols=297 Identities=19% Similarity=0.211 Sum_probs=181.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChhH----HHhchhhHH--HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccC
Q 001051 651 HGTKAIAEFGVVFLLFNIGLELSVER----LSSMKKYVF--GLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALS 724 (1173)
Q Consensus 651 ~~~~~LaeLGL~~LLF~aGLEldl~~----Lrr~~k~il--~La~~~vllt~~~vgll~~~llGls~~~ALlLGaiLS~T 724 (1173)
+....+.+.-+.+++|.+|+|+..+. |++.++..+ .-++.++++|+++ |+.+........-=-.+-++|
T Consensus 61 ~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP~~aAlGGm~vPali-----y~~~n~~~~~~~~GW~Ip~AT 135 (423)
T PRK14853 61 SLGTWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALPVAAALGGMIVPALI-----YVAVNLAGGGALRGWAIPTAT 135 (423)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHhHHHHHHH-----HHHHhCCchhhhhhhhhhhhh
Confidence 44578888889999999999996653 333333333 3455677776542 222222111111111233569
Q ss_pred cHHHHHHHHHhcCCC-CCchhHHHHHHHhhhhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001051 725 STAVVLQVLQERGES-TSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAG 803 (1173)
Q Consensus 725 SpaVVv~vL~elg~l-~s~~grl~Ls~sllnDi~aIvlf~ll~~la~~~s~g~~~~~~i~~~Lgl~ll~iil~ill~lli 803 (1173)
|.+.++.+|...|.. ++..+..+++.+++||+.++++++++. +++..+.. +.. .++.+ +
T Consensus 136 DIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY-------t~~i~~~~----L~~----a~~~~-----~ 195 (423)
T PRK14853 136 DIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY-------TSELNLEA----LLL----ALVPL-----A 195 (423)
T ss_pred HHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc-------CCCCCHHH----HHH----HHHHH-----H
Confidence 999999999998765 778888999999999999998887652 12222211 110 11111 1
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhhccc------------chhHHHHHhHh
Q 001051 804 GRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAET------------EFSLQVESDIA 871 (1173)
Q Consensus 804 g~~llrpil~~l~~~~~~el~~l~vLal~lg~~~lae~lGLS~vLGAFvAGLiLsn~------------~~~~~l~e~l~ 871 (1173)
..++++ + .+.+..+.. +.+.+++++.....|+|+.+|+|++|+++|.. +..+++++.++
T Consensus 196 ~l~~l~----~---~~V~~~~~Y--~ilg~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~ 266 (423)
T PRK14853 196 LFWLLV----Q---KRVRKWWLL--LPLGVATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLR 266 (423)
T ss_pred HHHHHH----H---cCCchhhHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHH
Confidence 111211 1 111112222 23345777889999999999999999999842 22467888888
Q ss_pred hH-HHHHHHHH-HHHHhcccCh-hhhhhhh--hhHHHHHHHHHHHHHHHHHHHHHhc----------CCChhhhhhhhhc
Q 001051 872 PY-RGLLLGLF-FMTVGMSIDP-KLLLSNF--PVITGALGLLIGGKTILVALVGRLF----------GVSVISAIRTGLL 936 (1173)
Q Consensus 872 ~~-~~~LlpiF-Fv~iGm~Idl-~~L~~~~--~lilllvvllvv~K~l~v~l~~~l~----------g~~~real~lGl~ 936 (1173)
++ ..+++|+| |...|+++|. ..+...+ +..+.+++.++++|+++++...++. +.+|++-+.+|+.
T Consensus 267 p~V~~~ILPLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv~~L 346 (423)
T PRK14853 267 PLSAGVAVPVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGVALL 346 (423)
T ss_pred HHHHHHHHHHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHH
Confidence 87 47889999 9999999976 4342322 3566777888999999988877652 4567776666665
Q ss_pred ccCCcchhhHHHHHHHh-hccchhhhHHHHHHHHHHHHHHHHHHHh
Q 001051 937 LAPGGEFAFVAFGEAVN-QGIMSSQLSSLLFLLVGISMALTPWLAA 981 (1173)
Q Consensus 937 LaprGevalvla~lAl~-~giis~el~silvlvVvlS~iItPiL~~ 981 (1173)
-...-++++.+..+++. .+..-++.-.-+++..+++.+++-++.+
T Consensus 347 ~GIGFTmSlFI~~LAf~~~~~~~~~aKigil~~S~~s~~~G~~~l~ 392 (423)
T PRK14853 347 AGIGFTVSLLIGELAFGGGSARDDAVKVGVLTGSLIAALLASVLLR 392 (423)
T ss_pred HHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666777773 2211122222333344445555544443
No 22
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=99.51 E-value=4.9e-14 Score=167.88 Aligned_cols=133 Identities=16% Similarity=0.149 Sum_probs=125.5
Q ss_pred cccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhC--CCCEEEecCCCHHHHhhcCccccCEEEEecCCCcc
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL--DLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~--g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~ 1086 (1173)
++|++|||+|++|+.+++.|.+.|++|++||.|+++++.+++. +..+++||++++++|+++++++++.++++++|+..
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~~~ 310 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDDEA 310 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCcHH
Confidence 6899999999999999999999999999999999999988764 68899999999999999999999999999999999
Q ss_pred hHHHHHHHHhhCCCceEEEEecChhhHHHHHHCCCCeeecCCcHHHHHHHHHHHHh
Q 001051 1087 NYRTVWALSKYFPNVKTFVRAHDIDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQ 1142 (1173)
Q Consensus 1087 Ni~iv~~ar~l~p~~~IIara~d~e~~~~L~~aGAd~VI~p~~~aa~~LA~~vl~~ 1142 (1173)
|+.+++.+|++++. +++++++++++.+.++.+|+|.|++|+..++..+++.+..+
T Consensus 311 n~~~~~~~~~~~~~-~ii~~~~~~~~~~~~~~~g~~~vi~p~~~~~~~~~~~~~~~ 365 (453)
T PRK09496 311 NILSSLLAKRLGAK-KVIALVNRPAYVDLVEGLGIDIAISPRQATASEILRHVRRG 365 (453)
T ss_pred HHHHHHHHHHhCCC-eEEEEECCcchHHHHHhcCCCEEECHHHHHHHHHHHHhhcc
Confidence 99999999998775 89999999999999999999999999999999998887763
No 23
>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.43 E-value=2.7e-12 Score=133.71 Aligned_cols=163 Identities=38% Similarity=0.496 Sum_probs=151.2
Q ss_pred cccccccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCC
Q 001051 1005 TDDLQDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1173)
Q Consensus 1005 ~~~lk~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd 1084 (1173)
...+.+|+++||+|+.|+.+++.|...+.+++++|.|++.++.++..|+.+++||+++.++|..++++.++.+++++.++
T Consensus 17 ~~~l~~~~ii~g~~~~g~~~~~~l~~~~~~~~vi~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~a~~~~a~~vi~~~~~~ 96 (212)
T COG1226 17 IVRLKRHVIIVGFGRVGQIVARALLASGIPVVVIDSDEDRVELLRELGLLVVLGDATREEVLEAAGIERARAVIVTLSDD 96 (212)
T ss_pred cccCCCCEEEEcCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCcEEEecCCCHHHHHhcChhheeEEEEecCCH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHhhCCCceEEEEecC-hhhHHHHHHCCCCeeecCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhchH
Q 001051 1085 GANYRTVWALSKYFPNVKTFVRAHD-IDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPASEIAATINEFRTRHLS 1163 (1173)
Q Consensus 1085 ~~Ni~iv~~ar~l~p~~~IIara~d-~e~~~~L~~aGAd~VI~p~~~aa~~LA~~vl~~l~~~~~ei~~~i~~~r~~~~~ 1163 (1173)
..|..++..++..+|+.+++++.++ ....+.+...|++.+++++...+..+.+.++...+............+|.....
T Consensus 97 ~~~~~~~~~~~~~~p~~~i~~~~~~~~~~~~~l~~~G~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (212)
T COG1226 97 ATNVFIVLLARAINPELEILARARDLDEAVETLTTVGADEVVPPTFESALLLARAALVGLGGDSVEAILALIEIRRDRLA 176 (212)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeccchHHHHHHHHcCCCeeecHHHHHHHHHHHHHhcccCCchhhhhhhHHHHHHHHHh
Confidence 9999999999999999999999999 778899999999999999999999999999999998887777766677766665
Q ss_pred HhHh
Q 001051 1164 ELTE 1167 (1173)
Q Consensus 1164 ~l~~ 1167 (1173)
....
T Consensus 177 ~~~~ 180 (212)
T COG1226 177 DLEE 180 (212)
T ss_pred hhhh
Confidence 5543
No 24
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=99.42 E-value=4.6e-13 Score=159.59 Aligned_cols=132 Identities=23% Similarity=0.275 Sum_probs=122.0
Q ss_pred cccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhh-CCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchHH
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-LDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYR 1089 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~-~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni~ 1089 (1173)
|++|||+|++|+.+++.|.+.|++|+++|+|++.++.+++ .|.++++||++++.+|+++++++++.++++++++..|..
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~n~~ 81 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDETNMV 81 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHHHHH
Confidence 6899999999999999999999999999999999998876 789999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCceEEEEecChhh---HHHH--HHCCCCeeecCCcHHHHHHHHHHHHh
Q 001051 1090 TVWALSKYFPNVKTFVRAHDIDH---GLNL--EKAGATAVVPETLEPSLQLAAAVLAQ 1142 (1173)
Q Consensus 1090 iv~~ar~l~p~~~IIara~d~e~---~~~L--~~aGAd~VI~p~~~aa~~LA~~vl~~ 1142 (1173)
++..+|+++|+.++|+++.+.++ ...+ +++|+|.||.|...++..+++.+..+
T Consensus 82 ~~~~~r~~~~~~~ii~~~~~~~~~~~~~l~~~~~~G~~~vi~p~~~~a~~l~~~l~~~ 139 (453)
T PRK09496 82 ACQIAKSLFGAPTTIARVRNPEYAEYDKLFSKEALGIDLLISPELLVAREIARLIEYP 139 (453)
T ss_pred HHHHHHHhcCCCeEEEEECCccccchhhhhhhhcCCccEEECHHHHHHHHHHHHhcCC
Confidence 99999999999999999988776 3344 78999999999999999999877654
No 25
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.40 E-value=4.2e-13 Score=158.24 Aligned_cols=337 Identities=15% Similarity=0.118 Sum_probs=211.2
Q ss_pred HHHHHHHHHHHHHHHHHH---hcCC-CchHHHHHHHHHhhccccccc--cc-CchhHHHHHHHHHHHHHHHHhhcCChhH
Q 001051 604 FDVLWLLLASVIFVPIFQ---KIPG-GSPVLGYLAAGILIGPYGLSI--IR-HVHGTKAIAEFGVVFLLFNIGLELSVER 676 (1173)
Q Consensus 604 l~l~lLLl~A~ilg~L~~---Rl~~-lP~IvG~LLaGILLGP~gLgl--i~-~~~~~~~LaeLGL~~LLF~aGLEldl~~ 676 (1173)
+.+.+.++++.++-..+. +++. +|.-..+|+.|+++|-...+. .. ..-....+.-.-++.|+|.+|.-+.-+.
T Consensus 42 ~vi~lwil~asLaKi~fh~~~~l~~i~PES~lLI~~Gl~lG~ii~~~~~~~~~~L~s~vFFlyLLPPIvlDAGYfMp~r~ 121 (670)
T KOG1966|consen 42 YVITLWILVASLAKIVFHLMPKLRKIVPESCLLIILGLVLGGIIKALATIAPFFLESDVFFLYLLPPIVLDAGYFMPNRA 121 (670)
T ss_pred hhhHHHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHHHhhhccccccccccchhhhhcCHHHhcccccCccHH
Confidence 344444444444444333 3323 677788899999998643222 21 1112456667778999999999999999
Q ss_pred HHhchhhHHHHHHHHHHHHHHHHHHHHHH-----HhC--CChHHHHHHhhccccCcHHHHHHHHHhcCCCCCchhHHHHH
Q 001051 677 LSSMKKYVFGLGSAQVLVTAVVVGLVAHF-----VSG--LPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFS 749 (1173)
Q Consensus 677 Lrr~~k~il~La~~~vllt~~~vgll~~~-----llG--ls~~~ALlLGaiLS~TSpaVVv~vL~elg~l~s~~grl~Ls 749 (1173)
+..+...++..+++|.+.-++.+|..++. ++| .+...-+++|..+|+.+|+.|++++.|... +.-+--++.+
T Consensus 122 Ff~NlgtILlfAVvGTi~Na~~~g~sL~~i~~~glf~~~~glld~LlFgSLIsAVDPVAVLaVFEEihV-Ne~LfI~VFG 200 (670)
T KOG1966|consen 122 FFENLGTILLFAVVGTIWNAFTIGASLYAISLSGLFGMSIGLLDILLFGSLISAVDPVAVLAVFEEIHV-NEVLFIIVFG 200 (670)
T ss_pred HHhccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhcCchhhhhhhhhhcc-ccEEEeeeeh
Confidence 99999999999999999877666654443 345 346788999999999999999999999988 5556678889
Q ss_pred HHhhhhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Q 001051 750 VLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTL 829 (1173)
Q Consensus 750 ~sllnDi~aIvlf~ll~~la~~~s~g~~~~~~i~~~Lgl~ll~iil~ill~llig~~llrpil~~l~~~~~~el~~l~vL 829 (1173)
++++||.+.++++-+...+....+ ...........+..++...++++++|+++++.. .-..++-.+.+-.+ .++++
T Consensus 201 ESLlNDaVTVVLY~~f~sf~~ig~-~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~-sl~tkft~~vrvie--Pvfif 276 (670)
T KOG1966|consen 201 ESLLNDAVTVVLYNMFISFVEIGS-DNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLA-SLVTKFTKHVRVLE--PVFIF 276 (670)
T ss_pred hhhhcCceEEehHHHHHHHHHhcc-cceeEeeeecceeEEEEEecCchhHHHHHHHHH-HHHHHhhcceeeec--chhhh
Confidence 999999999999855533322100 000000001111111222334444444444322 22223322222222 23457
Q ss_pred HHHHHHHHHHHHhchhHHHHHHHHHHhhccc---chhHHHHHhHhhH----HHHHHHHHHHHHhcccChhhhhhhhhhHH
Q 001051 830 LVILGTSLLTARAGLSMALGAFLAGLLLAET---EFSLQVESDIAPY----RGLLLGLFFMTVGMSIDPKLLLSNFPVIT 902 (1173)
Q Consensus 830 al~lg~~~lae~lGLS~vLGAFvAGLiLsn~---~~~~~l~e~l~~~----~~~LlpiFFv~iGm~Idl~~L~~~~~lil 902 (1173)
++++.+|+.+|.+|+|+++|..+.|+++... ..+++.......+ ...-.++.|+++|.+.--..-..+|..++
T Consensus 277 ~~pYlaYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~~h~wd~~Fi~ 356 (670)
T KOG1966|consen 277 LLPYLAYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSSNHHWDFAFIC 356 (670)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCCcceeehhhhh
Confidence 8899999999999999999999999999864 2333333333333 34447888999998763221111334455
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC------CChhhhhhhhhcccCCcchhhHHHH
Q 001051 903 GALGLLIGGKTILVALVGRLFG------VSVISAIRTGLLLAPGGEFAFVAFG 949 (1173)
Q Consensus 903 llvvllvv~K~l~v~l~~~l~g------~~~real~lGl~LaprGevalvla~ 949 (1173)
+.++..++.|.+++.+.+++.+ ++..+.+. |+..|.-+.+.++
T Consensus 357 ~T~~fc~~~R~lgv~~lt~~~N~fr~~k~~~~DQfi----msyGGLRGAiaF~ 405 (670)
T KOG1966|consen 357 LTLVFCLIYRAIGVVVLTWFLNKFRMVKLEFVDQFI----MSYGGLRGAIAFG 405 (670)
T ss_pred hHHHHHHHHHHHHhhhhhhhhhhhheeeccccceee----eecCCcchhhhee
Confidence 5566667889999888887653 33444443 4444554444433
No 26
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=99.31 E-value=3.8e-10 Score=130.01 Aligned_cols=268 Identities=19% Similarity=0.196 Sum_probs=156.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChhHHH----hchhhHH--HHHHHHHHHHHHHHHHHHHHHhCCChH-HHHHHhhcccc
Q 001051 651 HGTKAIAEFGVVFLLFNIGLELSVERLS----SMKKYVF--GLGSAQVLVTAVVVGLVAHFVSGLPGP-ASIVIGNGLAL 723 (1173)
Q Consensus 651 ~~~~~LaeLGL~~LLF~aGLEldl~~Lr----r~~k~il--~La~~~vllt~~~vgll~~~llGls~~-~ALlLGaiLS~ 723 (1173)
+....+.+.-+.++.|.+|+|+..+.+. +.++..+ .-++.++++|+++ |..+....+ ..--. .+=..
T Consensus 51 ~l~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~i-----y~~~n~~~~~~~~GW-~IP~A 124 (373)
T TIGR00773 51 SLLHWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALI-----YLAFNANDPITREGW-AIPAA 124 (373)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHH-----HhheecCCCcccCcc-ccccH
Confidence 4457788888899999999999877554 2333333 2345566666542 222211100 00000 11234
Q ss_pred CcHHHHHHHHHhcCC-CCCchhHHHHHHHhhhhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 001051 724 SSTAVVLQVLQERGE-STSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIA 802 (1173)
Q Consensus 724 TSpaVVv~vL~elg~-l~s~~grl~Ls~sllnDi~aIvlf~ll~~la~~~s~g~~~~~~i~~~Lgl~ll~iil~ill~ll 802 (1173)
||.+..+.++.=.|. .+......+++.+++||+.++++.+++. . .+..+. .+. ++.. .+
T Consensus 125 TDiAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~FY---t----~~i~~~----~L~-------~a~~--~~ 184 (373)
T TIGR00773 125 TDIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALFY---T----NDLSMA----ALL-------VAAV--AI 184 (373)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeeec---C----CCCCHH----HHH-------HHHH--HH
Confidence 666665555543332 3445567778889999999998876541 1 122221 111 1111 11
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhhcccc-----hhHHHHHhHhhHH-HH
Q 001051 803 GGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETE-----FSLQVESDIAPYR-GL 876 (1173)
Q Consensus 803 ig~~llrpil~~l~~~~~~el~~l~vLal~lg~~~lae~lGLS~vLGAFvAGLiLsn~~-----~~~~l~e~l~~~~-~~ 876 (1173)
...+++ ++. +.+..... +.+.+..++.....|+|+.+|+|++|+++|..+ ..+++++.+++.. .+
T Consensus 185 ~~l~~~----~~~---~v~~~~~y--~~lgvllW~~~~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~v~~l 255 (373)
T TIGR00773 185 AVLAVL----NRC---GVRRLGPY--MLVGVILWFAVLKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWVAYL 255 (373)
T ss_pred HHHHHH----HHc---CCchhhHH--HHHHHHHHHHHHHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHHHHHH
Confidence 111221 211 12222221 223333444448999999999999999999742 2457778888875 56
Q ss_pred HHHHH-HHHHhcccChhhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHhc----------CCChhhhhhhhhcccCCcchh
Q 001051 877 LLGLF-FMTVGMSIDPKLLLSN-FPVITGALGLLIGGKTILVALVGRLF----------GVSVISAIRTGLLLAPGGEFA 944 (1173)
Q Consensus 877 LlpiF-Fv~iGm~Idl~~L~~~-~~lilllvvllvv~K~l~v~l~~~l~----------g~~~real~lGl~LaprGeva 944 (1173)
++|+| |+..|.++|...+... .+..+.+++..+++|+++++..+++. +.+|++-..+|+.-...-+++
T Consensus 256 ilPlFAFanAGv~l~~~~~~~~~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~L~GIGFTmS 335 (373)
T TIGR00773 256 ILPLFAFANAGVSLQGVSLNGLTSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGVLCGIGFTMS 335 (373)
T ss_pred HHHHHHHHhcCeeeecCcchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 78999 9999999976443221 34456777788999999998887762 456777666665433344555
Q ss_pred hHHHHHHHh
Q 001051 945 FVAFGEAVN 953 (1173)
Q Consensus 945 lvla~lAl~ 953 (1173)
+.+..+++.
T Consensus 336 lfI~~LAf~ 344 (373)
T TIGR00773 336 IFIASLAFG 344 (373)
T ss_pred HHHHHHhcC
Confidence 666666663
No 27
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.20 E-value=2.8e-09 Score=124.66 Aligned_cols=268 Identities=20% Similarity=0.237 Sum_probs=157.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChhHHH----hchhhHH--HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccC
Q 001051 651 HGTKAIAEFGVVFLLFNIGLELSVERLS----SMKKYVF--GLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALS 724 (1173)
Q Consensus 651 ~~~~~LaeLGL~~LLF~aGLEldl~~Lr----r~~k~il--~La~~~vllt~~~vgll~~~llGls~~~ALlLGaiLS~T 724 (1173)
+....+.+..+.+++|.+|+|+..+.+. +.++..+ .-++.|+++|++ .|+.+..+....--.| +-.+|
T Consensus 67 sl~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAl-----IY~~~n~~~~~~~GWg-IPmAT 140 (438)
T PRK14856 67 SLHNWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGL-----IYFFLNADTPSQHGFG-IPMAT 140 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHH-----HHhheecCCCccCccc-cccHH
Confidence 4557888888999999999999777554 3333333 234556666654 2222222111111111 22347
Q ss_pred cHHHHHHHHHhcCC-CCCchhHHHHHHHhhhhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001051 725 STAVVLQVLQERGE-STSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAG 803 (1173)
Q Consensus 725 SpaVVv~vL~elg~-l~s~~grl~Ls~sllnDi~aIvlf~ll~~la~~~s~g~~~~~~i~~~Lgl~ll~iil~ill~lli 803 (1173)
|++.++.++.=.|. .+..+...+++.+++||+.+|++++++. . .+..+.. + +++.++. +
T Consensus 141 DIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY---t----~~i~~~~----L-------~~a~~~~--~ 200 (438)
T PRK14856 141 DIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFY---T----TNLKFAW----L-------LGALGVV--L 200 (438)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeec---C----CCCcHHH----H-------HHHHHHH--H
Confidence 77766666644433 2445567778889999999998876541 1 1222211 1 1111111 1
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhhcccch---------------------
Q 001051 804 GRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEF--------------------- 862 (1173)
Q Consensus 804 g~~llrpil~~l~~~~~~el~~l~vLal~lg~~~lae~lGLS~vLGAFvAGLiLsn~~~--------------------- 862 (1173)
..+++ ++. +.++.-.| +.+.+..++.....|+|+.++.++.|+++|-.+.
T Consensus 201 ~l~~l----n~~-~v~~~~~Y----~~~G~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (438)
T PRK14856 201 VLAVL----NRL-NVRSLIPY----LLLGVLLWFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSG 271 (438)
T ss_pred HHHHH----HHc-CCccccHH----HHHHHHHHHHHHHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhccccc
Confidence 11121 221 12222223 3345666777889999999999999999985211
Q ss_pred ------------------------hHHHHHhHhhHHH-HHHHHH-HHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHHH
Q 001051 863 ------------------------SLQVESDIAPYRG-LLLGLF-FMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILV 916 (1173)
Q Consensus 863 ------------------------~~~l~e~l~~~~~-~LlpiF-Fv~iGm~Idl~~L~~~~~lilllvvllvv~K~l~v 916 (1173)
-+++++.++|... +.+|+| |.-.|..++.......-++.+.+++.+++||++++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~~~pv~lGI~~GLvvGK~lGI 351 (438)
T PRK14856 272 ALLTKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLEVDKVLLGVILGLCLGKPLGI 351 (438)
T ss_pred cccccchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhccCcHHHHHHHHHHhcchHHH
Confidence 1345556666544 668888 88889888754322223556777888899999999
Q ss_pred HHHHHhc----------CCChhhhhhhhhcccCCcchhhHHHHHHHh
Q 001051 917 ALVGRLF----------GVSVISAIRTGLLLAPGGEFAFVAFGEAVN 953 (1173)
Q Consensus 917 ~l~~~l~----------g~~~real~lGl~LaprGevalvla~lAl~ 953 (1173)
+..+++. |.+|++-+.+|+.-...-++++.+..+++.
T Consensus 352 ~~~s~lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~ 398 (438)
T PRK14856 352 FLITFISEKLKITARPKGISWWHILGAGLLAGIGFTMSMFISNLAFT 398 (438)
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8877752 456777666665433444556666666773
No 28
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.07 E-value=3.9e-08 Score=113.29 Aligned_cols=269 Identities=15% Similarity=0.174 Sum_probs=156.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChhHHH----hchhhHH--HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccC
Q 001051 651 HGTKAIAEFGVVFLLFNIGLELSVERLS----SMKKYVF--GLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALS 724 (1173)
Q Consensus 651 ~~~~~LaeLGL~~LLF~aGLEldl~~Lr----r~~k~il--~La~~~vllt~~~vgll~~~llGls~~~ALlLGaiLS~T 724 (1173)
+..+.+.+.-+.+++|.+|+|+..+.+. +.++..+ .-++.++++|+++ |+.+..+....--. .+=..|
T Consensus 55 ~l~~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlI-----y~~~n~~~~~~~GW-~IP~AT 128 (383)
T PRK14854 55 NLMHWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLI-----YLSINHDIKVINGW-AIPSAT 128 (383)
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHH-----HHhhccCCcccCcc-ccccHH
Confidence 4457788888899999999999776544 3333333 2355566666542 22221111000011 122346
Q ss_pred cHHHHHHHHHhcCC-CCCchhHHHHHHHhhhhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001051 725 STAVVLQVLQERGE-STSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAG 803 (1173)
Q Consensus 725 SpaVVv~vL~elg~-l~s~~grl~Ls~sllnDi~aIvlf~ll~~la~~~s~g~~~~~~i~~~Lgl~ll~iil~ill~lli 803 (1173)
|.+..+.++.=.|. .+....-.+++.+++||+.++++.+++. . .+..+.. + .++.+ .+.
T Consensus 129 DIAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlFY---t----~~i~~~~----L-------~~A~~--~~~ 188 (383)
T PRK14854 129 DIAFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIFY---T----KSLSLLS----L-------SLGTL--FIL 188 (383)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeec---C----CCccHHH----H-------HHHHH--HHH
Confidence 66666665543332 3444556667789999999998876541 1 1222211 1 01111 111
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhhcccc-----hhHHHHHhHhhHH-HHH
Q 001051 804 GRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETE-----FSLQVESDIAPYR-GLL 877 (1173)
Q Consensus 804 g~~llrpil~~l~~~~~~el~~l~vLal~lg~~~lae~lGLS~vLGAFvAGLiLsn~~-----~~~~l~e~l~~~~-~~L 877 (1173)
..++ +++..+.++.-.| +.+.+..++.....|+|+.++.++.|+++|..+ ..+++++.+++.. .+.
T Consensus 189 ~l~~----~nr~~~v~~~~~Y----~~~G~~lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p~v~~~I 260 (383)
T PRK14854 189 AMII----CNRIFKINRSSVY----VVLGFFAWFCTIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSLHPWIIYFI 260 (383)
T ss_pred HHHH----HHHhcCCceehHH----HHHHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhchHHHhh
Confidence 1111 1222112222233 345566677888999999999999999999632 2357788888874 466
Q ss_pred HHHH-HHHHhcccChhhhhh-hhhhHHHHHHHHHHHHHHHHHHHHHhc----------CCChhhhhhhhhcccCCcchhh
Q 001051 878 LGLF-FMTVGMSIDPKLLLS-NFPVITGALGLLIGGKTILVALVGRLF----------GVSVISAIRTGLLLAPGGEFAF 945 (1173)
Q Consensus 878 lpiF-Fv~iGm~Idl~~L~~-~~~lilllvvllvv~K~l~v~l~~~l~----------g~~~real~lGl~LaprGeval 945 (1173)
+|+| |...|..++-..+.. .-+..+.+++.+++||+++++...++. +.+|++-..+|+.-...-++++
T Consensus 261 lPlFA~aNAGV~l~~~~~~~~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSL 340 (383)
T PRK14854 261 LPVFAFANAGISFSGISFSILFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISLLCGIGFTMSL 340 (383)
T ss_pred HHHHHhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 8888 888888884222211 124566777888999999988877652 3567776666654334445566
Q ss_pred HHHHHHHh
Q 001051 946 VAFGEAVN 953 (1173)
Q Consensus 946 vla~lAl~ 953 (1173)
.++.+++.
T Consensus 341 FIa~LAF~ 348 (383)
T PRK14854 341 FIGVLAFN 348 (383)
T ss_pred HHHHhhCC
Confidence 66667774
No 29
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.03 E-value=4.1e-08 Score=113.58 Aligned_cols=267 Identities=19% Similarity=0.181 Sum_probs=156.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChhHHH----hchhhHH--HHHHHHHHHHHHHHHHHHHHHhCCChH-HHHHHhhcccc
Q 001051 651 HGTKAIAEFGVVFLLFNIGLELSVERLS----SMKKYVF--GLGSAQVLVTAVVVGLVAHFVSGLPGP-ASIVIGNGLAL 723 (1173)
Q Consensus 651 ~~~~~LaeLGL~~LLF~aGLEldl~~Lr----r~~k~il--~La~~~vllt~~~vgll~~~llGls~~-~ALlLGaiLS~ 723 (1173)
+..+.+.+.-+.+++|.+|+|+..+.+. +.++..+ .-++.++++|+++ |+.+..... ..--.| +=.+
T Consensus 58 sl~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlI-----y~~~n~g~~~~~~GWg-IPmA 131 (389)
T PRK09560 58 SLLHWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALI-----YAAFNYNNPETLRGWA-IPAA 131 (389)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHH-----HheeecCCCcccCccc-cccH
Confidence 4457788888899999999999877554 2333333 2355566666542 222211100 000111 1234
Q ss_pred CcHHHHHHHHHhcCC-CCCchhHHHHHHHhhhhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 001051 724 SSTAVVLQVLQERGE-STSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIA 802 (1173)
Q Consensus 724 TSpaVVv~vL~elg~-l~s~~grl~Ls~sllnDi~aIvlf~ll~~la~~~s~g~~~~~~i~~~Lgl~ll~iil~ill~ll 802 (1173)
||.+..+.++.=.|. .+......+++.+++||+.++++.+++. . .+..+.. +. .+.+ .+
T Consensus 132 TDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FY---t----~~i~~~~----L~-------~a~~--~~ 191 (389)
T PRK09560 132 TDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFY---T----SDLSLPA----LA-------LAAI--AI 191 (389)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeec---C----CCCCHHH----HH-------HHHH--HH
Confidence 677766666643332 2444567778889999999998876541 1 1222211 11 1111 11
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhhcccc-------hhHHHHHhHhhHHH
Q 001051 803 GGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETE-------FSLQVESDIAPYRG 875 (1173)
Q Consensus 803 ig~~llrpil~~l~~~~~~el~~l~vLal~lg~~~lae~lGLS~vLGAFvAGLiLsn~~-------~~~~l~e~l~~~~~ 875 (1173)
...+++ ++. +.++.-.| +.+.+..++.....|+|+.++.++.|+++|..+ ..+++++.++|...
T Consensus 192 ~~l~~l----n~~-~v~~~~~Y----~~~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~ 262 (389)
T PRK09560 192 AVLFLL----NRL-GVTKLTPY----LIVGAILWFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVA 262 (389)
T ss_pred HHHHHH----HHc-CCccchHH----HHHHHHHHHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhh
Confidence 111222 111 11222223 344566677788999999999999999999631 13567888888866
Q ss_pred HH-HHHH-HHHHhcccChhhhhh-hhhhHHHHHHHHHHHHHHHHHHHHHhc----------CCChhhhhhhhhcccCCcc
Q 001051 876 LL-LGLF-FMTVGMSIDPKLLLS-NFPVITGALGLLIGGKTILVALVGRLF----------GVSVISAIRTGLLLAPGGE 942 (1173)
Q Consensus 876 ~L-lpiF-Fv~iGm~Idl~~L~~-~~~lilllvvllvv~K~l~v~l~~~l~----------g~~~real~lGl~LaprGe 942 (1173)
++ +|+| |...|..++-..+.. .-+..+.+++.+++||+++++...++. |.+|++-..+|+.-...-+
T Consensus 263 ~~IlPlFAlaNAGV~l~~~~~~~~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFT 342 (389)
T PRK09560 263 FAILPLFAFANAGVSLAGISLSSLTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSVLCGIGFT 342 (389)
T ss_pred hhhHHHHHhhcCCeeecCCcHHhccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 55 8888 888888884322322 124566777888999999998877752 4567776666654333445
Q ss_pred hhhHHHHHHH
Q 001051 943 FAFVAFGEAV 952 (1173)
Q Consensus 943 valvla~lAl 952 (1173)
+++.+..+++
T Consensus 343 mSLFIa~LAF 352 (389)
T PRK09560 343 MSLFIGSLAF 352 (389)
T ss_pred HHHHHHHhhc
Confidence 5666666677
No 30
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.00 E-value=6.5e-08 Score=111.79 Aligned_cols=268 Identities=20% Similarity=0.230 Sum_probs=155.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChhHHH----hchhhHH--HHHHHHHHHHHHHHHHHHHHHhCCChHH-HHHHhhcccc
Q 001051 651 HGTKAIAEFGVVFLLFNIGLELSVERLS----SMKKYVF--GLGSAQVLVTAVVVGLVAHFVSGLPGPA-SIVIGNGLAL 723 (1173)
Q Consensus 651 ~~~~~LaeLGL~~LLF~aGLEldl~~Lr----r~~k~il--~La~~~vllt~~~vgll~~~llGls~~~-ALlLGaiLS~ 723 (1173)
+....+.+.-+.+++|.+|+|+..+.+. +.++..+ .-++.++++|+++ |+.+..+.+. .--. .+=.+
T Consensus 58 ~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAli-----y~~~n~~~~~~~~GW-aIP~A 131 (388)
T PRK09561 58 PLLLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALI-----YLLFNYADPVTREGW-AIPAA 131 (388)
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHH-----HhheecCCCcccCcc-ccccH
Confidence 3457788888899999999999887654 2233333 2345566666542 2222111000 0001 11234
Q ss_pred CcHHHHHHHHHhcCC-CCCchhHHHHHHHhhhhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 001051 724 SSTAVVLQVLQERGE-STSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIA 802 (1173)
Q Consensus 724 TSpaVVv~vL~elg~-l~s~~grl~Ls~sllnDi~aIvlf~ll~~la~~~s~g~~~~~~i~~~Lgl~ll~iil~ill~ll 802 (1173)
||.+..+.++.=.|. .+......+++.+++||+.++++.+++. . ++..+.. + .++.. .+
T Consensus 132 TDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY---t----~~i~~~~----L-------~~a~~--~~ 191 (388)
T PRK09561 132 TDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFY---T----SDLSMVS----L-------GVAAV--AI 191 (388)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeec---C----CCccHHH----H-------HHHHH--HH
Confidence 666666665543332 2444567778889999999998876541 1 1222211 1 01111 11
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhhcccc-----hhHHHHHhHhhHHHH-
Q 001051 803 GGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETE-----FSLQVESDIAPYRGL- 876 (1173)
Q Consensus 803 ig~~llrpil~~l~~~~~~el~~l~vLal~lg~~~lae~lGLS~vLGAFvAGLiLsn~~-----~~~~l~e~l~~~~~~- 876 (1173)
...+++ ++. +.++.-.| +.+.+..++.....|+|+.++.++.|+++|... ..+++++.++|...+
T Consensus 192 ~~l~~l----n~~-~v~~~~~Y----~~~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~p~v~~~ 262 (388)
T PRK09561 192 AVLAVL----NLC-GVRRTSVY----ILVGVVLWVAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHGLHPWVAFL 262 (388)
T ss_pred HHHHHH----HHc-CCccchHH----HHHHHHHHHHHHHccccHHHHHHHHHhhccccCCCCCCHHHHHHHHhhhhhhhe
Confidence 111121 211 11222223 334566677888999999999999999999631 245788888887655
Q ss_pred HHHHH-HHHHhcccChhhhhh-hhhhHHHHHHHHHHHHHHHHHHHHHhc----------CCChhhhhhhhhcccCCcchh
Q 001051 877 LLGLF-FMTVGMSIDPKLLLS-NFPVITGALGLLIGGKTILVALVGRLF----------GVSVISAIRTGLLLAPGGEFA 944 (1173)
Q Consensus 877 LlpiF-Fv~iGm~Idl~~L~~-~~~lilllvvllvv~K~l~v~l~~~l~----------g~~~real~lGl~LaprGeva 944 (1173)
.+|+| |.-.|..++-..+.. .-+..+.+++.+++||+++++...++. +.+|++-..+|+.-...-+++
T Consensus 263 IlPlFAfaNAGV~l~~~~~~~~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTmS 342 (388)
T PRK09561 263 ILPLFAFANAGVSLQGVTLDGLTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGVLCGIGFTMS 342 (388)
T ss_pred eHHHHHhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 68888 888888883222211 124566777888999999998877752 356777666665433333455
Q ss_pred hHHHHHHHh
Q 001051 945 FVAFGEAVN 953 (1173)
Q Consensus 945 lvla~lAl~ 953 (1173)
+.+..++++
T Consensus 343 LFIa~LAF~ 351 (388)
T PRK09561 343 IFIASLAFG 351 (388)
T ss_pred HHHHHHhcC
Confidence 666666664
No 31
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.90 E-value=2.5e-07 Score=108.25 Aligned_cols=265 Identities=20% Similarity=0.189 Sum_probs=155.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChhHHH----hchhhHH--HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccC
Q 001051 651 HGTKAIAEFGVVFLLFNIGLELSVERLS----SMKKYVF--GLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALS 724 (1173)
Q Consensus 651 ~~~~~LaeLGL~~LLF~aGLEldl~~Lr----r~~k~il--~La~~~vllt~~~vgll~~~llGls~~~ALlLGaiLS~T 724 (1173)
+....+.+.-+.+++|.+|+|+..+.+. +.++..+ .-++.++++|+++ |+.+..+.+..--. .+-.+|
T Consensus 62 sl~~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlI-----y~~~n~~~~~~~GW-gIPmAT 135 (423)
T PRK14855 62 SLEHWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAAL-----YTALNAGGPGASGW-GVPMAT 135 (423)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHH-----HheeecCCCccCcc-ccccHH
Confidence 4457788888899999999999877554 2233333 2345566666532 22222111111111 122347
Q ss_pred cHHHHHHHHHhcCC-CCCchhHHHHHHHhhhhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001051 725 STAVVLQVLQERGE-STSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAG 803 (1173)
Q Consensus 725 SpaVVv~vL~elg~-l~s~~grl~Ls~sllnDi~aIvlf~ll~~la~~~s~g~~~~~~i~~~Lgl~ll~iil~ill~lli 803 (1173)
|++..+.++.=.|. .+......+++.+++||+.++++.+++. . .+..+. .+ .++.++..
T Consensus 136 DIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFY---t----~~i~~~----~L-------~~a~~~~~-- 195 (423)
T PRK14855 136 DIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFY---T----SGLNLL----AL-------LLAALTWA-- 195 (423)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeec---C----CCCCHH----HH-------HHHHHHHH--
Confidence 77777666654443 2334567778889999999998775541 1 122221 11 11111111
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhhcccc--h-------------------
Q 001051 804 GRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETE--F------------------- 862 (1173)
Q Consensus 804 g~~llrpil~~l~~~~~~el~~l~vLal~lg~~~lae~lGLS~vLGAFvAGLiLsn~~--~------------------- 862 (1173)
..+++ ++. +.++.-.| +.+.+..++.....|+|+.++.++.|+++|..+ .
T Consensus 196 ~l~~l----n~~-~v~~~~~Y----~~~G~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (423)
T PRK14855 196 LALLA----GRL-GVTSLKIY----AVLGALLWFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVV 266 (423)
T ss_pred HHHHH----HHc-CCccccHH----HHHHHHHHHHHHHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhh
Confidence 11121 221 12222223 344566677888999999999999999998631 0
Q ss_pred -----------------hHHHHHhHhhHHH-HHHHHH-HHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 001051 863 -----------------SLQVESDIAPYRG-LLLGLF-FMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRLF 923 (1173)
Q Consensus 863 -----------------~~~l~e~l~~~~~-~LlpiF-Fv~iGm~Idl~~L~~~~~lilllvvllvv~K~l~v~l~~~l~ 923 (1173)
.+++++.++|... +.+|+| |.-.|..++-.. . -++.+.+++.+++||+++++..+++.
T Consensus 267 ~~~~~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~-~--~pv~lGI~~GLvvGK~lGI~~~s~la 343 (423)
T PRK14855 267 GARLRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGG-L--GTVSLGVFLGLLLGKPLGVVGGAWLA 343 (423)
T ss_pred hHHHHhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCC-C--CcHHHHHHHHHHhcchHHHHHHHHHH
Confidence 1345666677655 468888 788888884322 2 24566777888999999998877752
Q ss_pred ----------CCChhhhhhhhhcccCCcchhhHHHHHHHh
Q 001051 924 ----------GVSVISAIRTGLLLAPGGEFAFVAFGEAVN 953 (1173)
Q Consensus 924 ----------g~~~real~lGl~LaprGevalvla~lAl~ 953 (1173)
+++|++-+.+|+.-...-++++.+..+++.
T Consensus 344 vkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~ 383 (423)
T PRK14855 344 VRLGLASLPRRVNWLHMLGAGLLAGIGFTMSLFISNLAFA 383 (423)
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 456777666665433444556666667774
No 32
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=98.86 E-value=1.8e-08 Score=116.38 Aligned_cols=269 Identities=22% Similarity=0.253 Sum_probs=146.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCChhHHH----hchhhHHH--HHHHHHHHHHHHHHHHHHHHhCCChH-HHHHHhhcccc
Q 001051 651 HGTKAIAEFGVVFLLFNIGLELSVERLS----SMKKYVFG--LGSAQVLVTAVVVGLVAHFVSGLPGP-ASIVIGNGLAL 723 (1173)
Q Consensus 651 ~~~~~LaeLGL~~LLF~aGLEldl~~Lr----r~~k~il~--La~~~vllt~~~vgll~~~llGls~~-~ALlLGaiLS~ 723 (1173)
+..+.+.+.-+.+++|.+|+|+..+.+. +.++..+. -++.++++|++ .|..+....+ ..--.| +-..
T Consensus 54 ~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPal-----Iyl~~n~~~~~~~~GW~-IP~A 127 (378)
T PF06965_consen 54 SLHHWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPAL-----IYLAFNAGGPEAAHGWA-IPMA 127 (378)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHH-----HHGGG--SSTTHHHHTS-SSS-
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHH-----HHheeecCCCCcCceEE-eccc
Confidence 4457888888999999999999877554 33333332 34455555543 2333332222 222222 3345
Q ss_pred CcHHHHHHHHHhcCC-CCCchhHHHHHHHhhhhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 001051 724 SSTAVVLQVLQERGE-STSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIA 802 (1173)
Q Consensus 724 TSpaVVv~vL~elg~-l~s~~grl~Ls~sllnDi~aIvlf~ll~~la~~~s~g~~~~~~i~~~Lgl~ll~iil~ill~ll 802 (1173)
||++..+.++.=.|. .+......+++.+++||+.++++.+++. . .+..+. .+ ..+... +
T Consensus 128 TDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FY---t----~~i~~~----~L-------~~a~~~-~- 187 (378)
T PF06965_consen 128 TDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFY---T----DGISLL----WL-------LLAAAA-L- 187 (378)
T ss_dssp --HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS------------HH----HH-------HHHHHH-H-
T ss_pred ccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeee---C----CCCCHH----HH-------HHHHHH-H-
Confidence 888888888754443 2344557778889999999998887652 1 111111 11 011111 1
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhhcccch---------hHHHHHhHhhH
Q 001051 803 GGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEF---------SLQVESDIAPY 873 (1173)
Q Consensus 803 ig~~llrpil~~l~~~~~~el~~l~vLal~lg~~~lae~lGLS~vLGAFvAGLiLsn~~~---------~~~l~e~l~~~ 873 (1173)
...++++ +. +.++...| +.+.+..++.....|+|+.++.++.|+++|..+. -+++++.++|.
T Consensus 188 ~~l~~l~----r~-~v~~~~~Y----~~~G~~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~ 258 (378)
T PF06965_consen 188 LLLFVLN----RL-GVRSLWPY----LLLGILLWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPW 258 (378)
T ss_dssp HHHHHHH----HT-T---THHH----HHHHHHHHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHH
T ss_pred HHHHHHH----HC-CCceehHH----HHHHHHHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhh
Confidence 1111222 11 11222223 2334566777789999999999999999997542 24677788887
Q ss_pred HH-HHHHHH-HHHHhcccChhhhhh-hhhhHHHHHHHHHHHHHHHHHHHHHhc----------CCChhhhhhhhhcccCC
Q 001051 874 RG-LLLGLF-FMTVGMSIDPKLLLS-NFPVITGALGLLIGGKTILVALVGRLF----------GVSVISAIRTGLLLAPG 940 (1173)
Q Consensus 874 ~~-~LlpiF-Fv~iGm~Idl~~L~~-~~~lilllvvllvv~K~l~v~l~~~l~----------g~~~real~lGl~Lapr 940 (1173)
.. +.+|+| |...|..++-..+.. .-+..+.+++.+++||+++++..+++. +.+|++-..+|+.-...
T Consensus 259 v~~~IlPlFAlaNAGV~l~~~~~~~~~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~LaGIG 338 (378)
T PF06965_consen 259 VAFVILPLFALANAGVSLSGSSLGDLTSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGLLAGIG 338 (378)
T ss_dssp HHHTHHHHHHHHHS----SSS---THHHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHHHTT--
T ss_pred hhhhhHHhHhheeCceEEecCchHhhhChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 54 558888 888888887654322 224455666778899999988876653 34566655555543344
Q ss_pred cchhhHHHHHHHhh
Q 001051 941 GEFAFVAFGEAVNQ 954 (1173)
Q Consensus 941 Gevalvla~lAl~~ 954 (1173)
-++++.+..++++.
T Consensus 339 FTmSLFIa~LAF~~ 352 (378)
T PF06965_consen 339 FTMSLFIAGLAFDD 352 (378)
T ss_dssp HHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHcCC
Confidence 45566666667665
No 33
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=98.74 E-value=3.5e-06 Score=94.35 Aligned_cols=265 Identities=20% Similarity=0.254 Sum_probs=150.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCChhHHHh---chhh-HH--HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHh-hccccCc
Q 001051 653 TKAIAEFGVVFLLFNIGLELSVERLSS---MKKY-VF--GLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIG-NGLALSS 725 (1173)
Q Consensus 653 ~~~LaeLGL~~LLF~aGLEldl~~Lrr---~~k~-il--~La~~~vllt~~~vgll~~~llGls~~~ALlLG-aiLS~TS 725 (1173)
...+-+--+.++.+.+|+|+..+.+.. +++. ++ .-++.++++|+++ |+++..+-+.. .=| ++-++|+
T Consensus 63 ~~WINDgLMAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAli-----y~~~n~~~p~~-~~GWaIP~ATD 136 (390)
T COG3004 63 LLWINDGLMAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALI-----YLALNAGDPAT-LEGWAIPMATD 136 (390)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhhH-----hheeecCChhh-hcCcCcccHHH
Confidence 346666677888889999998887763 2332 22 2344455555432 22222111100 001 2234466
Q ss_pred HHHHHHHHHhcC-CCCCchhHHHHHHHhhhhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001051 726 TAVVLQVLQERG-ESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGVAAVKAAVAITAIIAGG 804 (1173)
Q Consensus 726 paVVv~vL~elg-~l~s~~grl~Ls~sllnDi~aIvlf~ll~~la~~~s~g~~~~~~i~~~Lgl~ll~iil~ill~llig 804 (1173)
.+.++.++.=+| ..++.+--.+++.+++||+.++++.+++. .. +.... .++ +.++...++
T Consensus 137 iAFAlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFY---t~----~Ls~~----al~------~a~~~i~vL-- 197 (390)
T COG3004 137 IAFALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFY---TT----DLSMA----ALG------IAALAIAVL-- 197 (390)
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhh---cC----CccHH----HHH------HHHHHHHHH--
Confidence 666655554332 23556667778889999999988876652 11 11211 111 111111111
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhhccc-----chhHHHHHhHhhHHH-HHH
Q 001051 805 RLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAET-----EFSLQVESDIAPYRG-LLL 878 (1173)
Q Consensus 805 ~~llrpil~~l~~~~~~el~~l~vLal~lg~~~lae~lGLS~vLGAFvAGLiLsn~-----~~~~~l~e~l~~~~~-~Ll 878 (1173)
.+ ++++.- +....| +++....+.....-|+|..++.++.|+++|-. ..-+++++.++|... +.+
T Consensus 198 -~~----lN~~~v-~~l~~Y----~~~gviLW~~vlkSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf~Il 267 (390)
T COG3004 198 -AV----LNRLGV-RRLSPY----LLVGVILWIAVLKSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAFFIL 267 (390)
T ss_pred -HH----HHHhCc-hhhhHH----HHHHHHHHHHHHHhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHHHHH
Confidence 11 122211 111112 34445555666789999999999999999942 245678888888754 558
Q ss_pred HHH-HHHHhcccC---hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc----------CCChhhhhhhhhcccCCcchh
Q 001051 879 GLF-FMTVGMSID---PKLLLSNFPVITGALGLLIGGKTILVALVGRLF----------GVSVISAIRTGLLLAPGGEFA 944 (1173)
Q Consensus 879 piF-Fv~iGm~Id---l~~L~~~~~lilllvvllvv~K~l~v~l~~~l~----------g~~~real~lGl~LaprGeva 944 (1173)
|+| |.-.|.++. .+.+.+ ++.+.++..+++||+++++..+++. |.+|++-..+++.-...-+++
T Consensus 268 PlFaFaNAGvsl~g~~~~~l~s--~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iLcGIGFTMS 345 (390)
T COG3004 268 PLFAFANAGVSLQGVSLSGLTS--PLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGIGFTMS 345 (390)
T ss_pred HHHHHccCCccccccccccccc--chHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHHHhhhHHHH
Confidence 888 888888776 344433 4456677778899999988887752 456766655555433333445
Q ss_pred hHHHHHHHhh
Q 001051 945 FVAFGEAVNQ 954 (1173)
Q Consensus 945 lvla~lAl~~ 954 (1173)
+.+..+++..
T Consensus 346 lFI~~LAf~~ 355 (390)
T COG3004 346 LFIASLAFGS 355 (390)
T ss_pred HHHHHHhcCC
Confidence 5555555544
No 34
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=98.21 E-value=0.003 Score=74.65 Aligned_cols=97 Identities=22% Similarity=0.265 Sum_probs=66.3
Q ss_pred HHHHHHHHHhhcccchhHHHHHhHhhHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 001051 847 ALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRLFGVS 926 (1173)
Q Consensus 847 vLGAFvAGLiLsn~~~~~~l~e~l~~~~~~LlpiFFv~iGm~Idl~~L~~~~~lilllvvllvv~K~l~v~l~~~l~g~~ 926 (1173)
++.....|++..-++..+.+ .--..+..+++-+||..+|+..|+..+.. -+..+++.++.+.+-.+..+..++++|++
T Consensus 243 il~~tt~~l~~~~~~~~~~l-~g~~~lg~~lly~ffa~IGa~a~i~~l~~-ap~~~l~~~i~l~iH~~l~l~~~kl~k~~ 320 (378)
T PF05684_consen 243 ILTVTTLGLATSFPPFRKLL-RGASELGTFLLYLFFAVIGASADISELLD-APSLFLFGFIILAIHLLLMLILGKLFKID 320 (378)
T ss_pred HHHHHHHHHHHhccchhhcC-CchHHHHHHHHHHHHHHHccccCHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 34445556665555544333 33345678899999999999999999887 55555555666778888899999999999
Q ss_pred hhhhhhhhhcccCCcchhhH
Q 001051 927 VISAIRTGLLLAPGGEFAFV 946 (1173)
Q Consensus 927 ~real~lGl~LaprGevalv 946 (1173)
..+....+.. +..|-.+..
T Consensus 321 l~~~~vAS~A-nIGGpaTA~ 339 (378)
T PF05684_consen 321 LFELLVASNA-NIGGPATAP 339 (378)
T ss_pred HHHHHHHhhc-ccCCcchHH
Confidence 8776655443 444444433
No 35
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=98.16 E-value=0.00031 Score=79.91 Aligned_cols=134 Identities=17% Similarity=0.104 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhhcccchhHHHHHhHhhHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001051 846 MALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRLFGV 925 (1173)
Q Consensus 846 ~vLGAFvAGLiLsn~~~~~~l~e~l~~~~~~LlpiFFv~iGm~Idl~~L~~~~~lilllvvllvv~K~l~v~l~~~l~g~ 925 (1173)
+++=+++.|++++|.. +.+.+.+.+-..+.+|+|-+..|+++|++.+...-...+++.++.++.-.+..+...+++|.
T Consensus 168 ~lilpILiGmilGNld--~~~~~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i~rllg~ 245 (312)
T PRK12460 168 AALLPLVLGMILGNLD--PDMRKFLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFADRLVGG 245 (312)
T ss_pred HHHHHHHHHHHHhccc--hhhHHHHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3567788899999943 23445555656678999999999999999887643323333333444445556666688888
Q ss_pred Chhhhhhhh--hcccCCcchhhHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHhhh
Q 001051 926 SVISAIRTG--LLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGISMALTPWLAAGG 983 (1173)
Q Consensus 926 ~~real~lG--l~LaprGevalvla~lAl~~giis~el~silvlvVvlS~iItPiL~~~~ 983 (1173)
+.+.++.++ -+-+.-| .+.+.+. .-......+.-...+...+++|.+++|++..|.
T Consensus 246 ~~~~g~li~stAGnAIcg-pAAVaAa-dP~~~~~~~~Ataqvaa~vivTail~P~~t~~~ 303 (312)
T PRK12460 246 TGIAGAAASSTAGNAVAT-PLAIAAA-DPSLAPVAAAATAQVAASVIVTAILTPLLTSWV 303 (312)
T ss_pred ChhHHHHHHHHhhHHHHH-HHHHHHh-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877777666 2211111 1111111 111111222233345557889999999998764
No 36
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=97.98 E-value=0.0011 Score=75.30 Aligned_cols=275 Identities=19% Similarity=0.207 Sum_probs=139.5
Q ss_pred HHHHHHHHHhhccccccccc---C-chhHHHHHHHHHHHHHHHHhhcCChhHHHhchhhHHHHHHHHHHHHHHHHHHHHH
Q 001051 629 VLGYLAAGILIGPYGLSIIR---H-VHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAH 704 (1173)
Q Consensus 629 IvG~LLaGILLGP~gLgli~---~-~~~~~~LaeLGL~~LLF~aGLEldl~~Lrr~~k~il~La~~~vllt~~~vgll~~ 704 (1173)
++.-++.|.++.-+..+.++ . ...+..=+..-+.+++|-.|-++|++......|+...+.+.-+++.+ +++++..
T Consensus 15 mvVPLllgalinTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~-~lgl~~~ 93 (314)
T PF03812_consen 15 MVVPLLLGALINTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGA-LLGLLVG 93 (314)
T ss_pred eHHHHHHHHHHHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHH-HHHHHHH
Confidence 34456666666644333332 1 11111223345677899999999999998888887777776666654 3566666
Q ss_pred HHhCCCh--------HHHHHHhhccccCcHHHHHHHHHhcCCCCCchhHHHHHHHhhhhHHHHHHHHHHHHHhcCCCCCC
Q 001051 705 FVSGLPG--------PASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGG 776 (1173)
Q Consensus 705 ~llGls~--------~~ALlLGaiLS~TSpaVVv~vL~elg~l~s~~grl~Ls~sllnDi~aIvlf~ll~~la~~~s~g~ 776 (1173)
.++|... ..++.+-++++.+..++=+.+..|+|- +. |..++.++++.
T Consensus 94 ~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd-~~-------------D~gA~~i~sl~----------- 148 (314)
T PF03812_consen 94 KFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGD-EE-------------DVGAFSILSLN----------- 148 (314)
T ss_pred HHcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCC-HH-------------HhHHHHHHHhh-----------
Confidence 6666532 233444444555555666666666553 11 11111111110
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH--HhchhHHHHHHHHH
Q 001051 777 VGFQAIAEALGVAAVKAAVAITAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTA--RAGLSMALGAFLAG 854 (1173)
Q Consensus 777 ~~~~~i~~~Lgl~ll~iil~ill~llig~~llrpil~~l~~~~~~el~~l~vLal~lg~~~lae--~lGLS~vLGAFvAG 854 (1173)
.-|.+ -+++++...+++ ..-+=+.+-+++.|
T Consensus 149 -------------------------------~GPf~----------------tMl~LG~sG~a~ip~~~lv~~llP~iiG 181 (314)
T PF03812_consen 149 -------------------------------DGPFF----------------TMLALGASGLANIPWMSLVAALLPIIIG 181 (314)
T ss_pred -------------------------------hhHHH----------------HHHHHhhccccCCCHHHHHHHHHHHHHH
Confidence 00000 011111111111 01111235577889
Q ss_pred HhhcccchhHHHHHhHhhHHHHHHHHHHHHHhcccChhhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHhc-CCChhhhhh
Q 001051 855 LLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSN-FPVITGALGLLIGGKTILVALVGRLF-GVSVISAIR 932 (1173)
Q Consensus 855 LiLsn~~~~~~l~e~l~~~~~~LlpiFFv~iGm~Idl~~L~~~-~~lilllvvllvv~K~l~v~l~~~l~-g~~~real~ 932 (1173)
++++|-+ +++.+.+.+-..+++|+|-..+|..+|+..+... +.-+++-+++ ++.-.+..++.-++. |.+..
T Consensus 182 ~iLGNLD--~~~r~fl~~~~~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~-~~vtg~~~~~~dr~i~~~~g~---- 254 (314)
T PF03812_consen 182 MILGNLD--PDFRKFLAPGVPILIPFFGFALGAGINLSNIIKAGLSGILLGVIV-VVVTGIPLYLADRLILKGNGV---- 254 (314)
T ss_pred HHHhcCC--HHHHHHHhcCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHH-HHHHhHHHHHHHHHHcCCCCc----
Confidence 9999854 3555666777889999999999999999988763 3322222222 222223344444442 32221
Q ss_pred hhhcccCCcchh-hHHHHHHHhh---ccchhhhHHHHHHHHHHHHHHHHHHHhhh
Q 001051 933 TGLLLAPGGEFA-FVAFGEAVNQ---GIMSSQLSSLLFLLVGISMALTPWLAAGG 983 (1173)
Q Consensus 933 lGl~LaprGeva-lvla~lAl~~---giis~el~silvlvVvlS~iItPiL~~~~ 983 (1173)
.|+..+.-..-+ ...+.++.-. ....+.--..+...+++|.+++|++..|.
T Consensus 255 aG~A~sstAGnavatPaaiA~~dP~~~~~~~~ATaQvAaavIvTail~P~lt~~~ 309 (314)
T PF03812_consen 255 AGAAISSTAGNAVATPAAIAAADPSFAPYAASATAQVAAAVIVTAILTPILTSWW 309 (314)
T ss_pred eeehHHhhhhhhhhhhHHHHHhChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122211111111 1111121111 11122233445567889999999998764
No 37
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=97.84 E-value=0.017 Score=68.16 Aligned_cols=90 Identities=18% Similarity=0.135 Sum_probs=56.6
Q ss_pred hchhHHHHHHHHHHhhcccc----hhHHHH-HhHhhHHHHHHHHHHHHHhcccChhhhhhhhhhHH-HHHHHHHHHHHHH
Q 001051 842 AGLSMALGAFLAGLLLAETE----FSLQVE-SDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVIT-GALGLLIGGKTIL 915 (1173)
Q Consensus 842 lGLS~vLGAFvAGLiLsn~~----~~~~l~-e~l~~~~~~LlpiFFv~iGm~Idl~~L~~~~~lil-llvvllvv~K~l~ 915 (1173)
+.++..+++++.|+++.|.- ..+ +. +.++.+.++.+-+|-+..=|++++..+.+.+..++ ++++-.++.-+..
T Consensus 245 ~~lP~f~~ami~g~ivrn~~~~~~~~~-id~~~i~~I~~~sL~~fl~~almsl~l~~l~~~a~Plliil~~q~i~~~~f~ 323 (368)
T PF03616_consen 245 LTLPLFVGAMIVGIIVRNILDKTGKYK-IDRKTIDRISGISLDLFLAMALMSLKLWVLADYALPLLIILAVQTILMVLFA 323 (368)
T ss_pred cCCchHHHHHHHHHHHHHHHHHhCccc-CCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578899999999999842 122 22 23344567777777666667889888877543333 3333334444556
Q ss_pred HHHHHHhcCCChhhhhhh
Q 001051 916 VALVGRLFGVSVISAIRT 933 (1173)
Q Consensus 916 v~l~~~l~g~~~real~l 933 (1173)
.++..+.+|-++ ++..+
T Consensus 324 ~fv~fr~~gkdy-daavm 340 (368)
T PF03616_consen 324 YFVTFRVMGKDY-DAAVM 340 (368)
T ss_pred HHHhhhhhCCCh-hHHHH
Confidence 667778888776 44443
No 38
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=97.59 E-value=0.14 Score=59.76 Aligned_cols=105 Identities=14% Similarity=0.182 Sum_probs=72.1
Q ss_pred CCCchHHHHHHHHHhhccccc-ccccC-ch----hHHHHHHHHHHHHHHHHhhcCChhHHHhchhhHHHHHHHHHHHHHH
Q 001051 624 PGGSPVLGYLAAGILIGPYGL-SIIRH-VH----GTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAV 697 (1173)
Q Consensus 624 ~~lP~IvG~LLaGILLGP~gL-gli~~-~~----~~~~LaeLGL~~LLF~aGLEldl~~Lrr~~k~il~La~~~vllt~~ 697 (1173)
+++++++--++.|+++|+... +.-+. .. ..+.+..+|+++ .|.++++.++...+...+.+....+..+++
T Consensus 29 ~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVL----lG~~l~~~~i~~~G~~~l~~~~~~v~~~~~ 104 (335)
T TIGR00698 29 PALSALFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITL----YGFRLTFPYIADVGPNEIVADTLILTSTFF 104 (335)
T ss_pred CCCcHHHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHH----HCccccHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 378999999999999998532 11111 11 224667777764 588999999999998887776666666655
Q ss_pred HHHHHHHHHhCCChHHHHHHhhccccCcHHHHHHH
Q 001051 698 VVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQV 732 (1173)
Q Consensus 698 ~vgll~~~llGls~~~ALlLGaiLS~TSpaVVv~v 732 (1173)
...++..-.+|++...++++|+..+....+.++++
T Consensus 105 ~~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~ 139 (335)
T TIGR00698 105 LTVFLGSSRLKLDKQMSILLGAGSSICGAAAVAAI 139 (335)
T ss_pred HHHHHHHHHhCCChhHHHHHHcchhHHHHHHHHHh
Confidence 44444434679999999999887666555444443
No 39
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=97.59 E-value=0.1 Score=62.42 Aligned_cols=90 Identities=19% Similarity=0.117 Sum_probs=60.4
Q ss_pred hchhHHHHHHHHHHhhcccc----hhHHHHHhHhhHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHH-HHHHHHHH
Q 001051 842 AGLSMALGAFLAGLLLAETE----FSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLL-IGGKTILV 916 (1173)
Q Consensus 842 lGLS~vLGAFvAGLiLsn~~----~~~~l~e~l~~~~~~LlpiFFv~iGm~Idl~~L~~~~~lilllvvll-vv~K~l~v 916 (1173)
+.++..+++++.|++++|.- ..+...+.++.+.++.+-+|-+..=|++++..+.+.+..+++++++- ++.-....
T Consensus 243 ~~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~~a~Plliil~~q~i~~~l~~~ 322 (398)
T TIGR00210 243 LMLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELADLAGPIALILLVQVMFMALYAI 322 (398)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999842 12223345566778888888888888999999888664444433333 33333556
Q ss_pred HHHHHhcCCChhhhhh
Q 001051 917 ALVGRLFGVSVISAIR 932 (1173)
Q Consensus 917 ~l~~~l~g~~~real~ 932 (1173)
|+..+.+|.+ .|+..
T Consensus 323 fv~fr~mg~~-ydaaV 337 (398)
T TIGR00210 323 FVTFRLMGKD-YDAAV 337 (398)
T ss_pred HHhHHhccch-HHHHH
Confidence 6777777766 55554
No 40
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=97.56 E-value=0.037 Score=63.85 Aligned_cols=107 Identities=19% Similarity=0.306 Sum_probs=76.4
Q ss_pred cCCCchHHHHHHHHHhhcccccccccCc----h-hHHHHHHHHHHHHHHHHhhcCChhHHHhchhhHHHHHHHHHHHHHH
Q 001051 623 IPGGSPVLGYLAAGILIGPYGLSIIRHV----H-GTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAV 697 (1173)
Q Consensus 623 l~~lP~IvG~LLaGILLGP~gLgli~~~----~-~~~~LaeLGL~~LLF~aGLEldl~~Lrr~~k~il~La~~~vllt~~ 697 (1173)
.+.+++++.-++.|+++|+..++.-+.. . ..+.+..+|+++ .|.++++.++.+.+...+...++.+.++++
T Consensus 23 ~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVL----lG~~l~~~~i~~~G~~~~~~~~~~v~~~~~ 98 (305)
T PF03601_consen 23 LPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVL----LGFRLSFSDILALGWKGLLIIIIVVILTFL 98 (305)
T ss_pred ccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHH----HCccccHHHHHHhCccHHHHHHHHHHHHHH
Confidence 4478899999999999997333332211 1 124677777664 588999999999999887777777777765
Q ss_pred HHHHHHHHHhCCChHHHHHHhhccccCcHHHHHHHH
Q 001051 698 VVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVL 733 (1173)
Q Consensus 698 ~vgll~~~llGls~~~ALlLGaiLS~TSpaVVv~vL 733 (1173)
...++....+|++...++++|...+......++.+-
T Consensus 99 ~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a 134 (305)
T PF03601_consen 99 LTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATA 134 (305)
T ss_pred HHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHc
Confidence 444444367899999999999887776665544443
No 41
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=97.55 E-value=0.25 Score=57.65 Aligned_cols=108 Identities=26% Similarity=0.351 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCch--HHH-HHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcCChhHHHh
Q 001051 603 LFDVLWLLLASVIFVPIFQKIPGGSP--VLG-YLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSS 679 (1173)
Q Consensus 603 Ll~l~lLLl~A~ilg~L~~Rl~~lP~--IvG-~LLaGILLGP~gLgli~~~~~~~~LaeLGL~~LLF~aGLEldl~~Lrr 679 (1173)
....+++++++..++.++..+ ++|. ++| -+++|++.+-.+.. ...++.+..++.+++--.+|..+..+.+..
T Consensus 8 ~~~w~i~l~ls~~~g~l~~~~-~vPa~~mlG~~l~a~~v~~~~~~~----l~~P~~l~~~~q~ilG~~ig~~~t~s~l~~ 82 (352)
T COG3180 8 ILQWFILLLLSLLGGWLLTLL-HVPAAWMLGAPLLAGIVAGLRGLT----LPLPRGLFKAGQVILGIMIGASLTPSVLDT 82 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHhcccc----ccCChHHHHHHHHHHHHHHhhhcCHHHHHH
Confidence 466778888898999999987 7664 567 77888888744322 345588888999999999999998887654
Q ss_pred ch---hhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHH
Q 001051 680 MK---KYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIV 716 (1173)
Q Consensus 680 ~~---k~il~La~~~vllt~~~vgll~~~llGls~~~ALl 716 (1173)
.. ...+.+.+. .++..+..+++...+..++..++++
T Consensus 83 l~~~w~~~~~v~~~-tl~~s~l~g~ll~r~~~~~~~Ta~~ 121 (352)
T COG3180 83 LKSNWPIVLVVLLL-TLLSSILLGWLLKRFSILPGNTAFL 121 (352)
T ss_pred HHHcccHHHHHHHH-HHHHHHHHHHHHHHhcCCCcchhhH
Confidence 33 322222222 2222233444433333456555554
No 42
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=97.46 E-value=0.028 Score=65.78 Aligned_cols=97 Identities=15% Similarity=0.106 Sum_probs=64.2
Q ss_pred HHHHHHhc-----hhHHHHHHHHHHhhcccc----hhHHHHHhHhhHHHHHHHHHHHHHhcccChhhhhhhh-hhHHHHH
Q 001051 836 SLLTARAG-----LSMALGAFLAGLLLAETE----FSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNF-PVITGAL 905 (1173)
Q Consensus 836 ~~lae~lG-----LS~vLGAFvAGLiLsn~~----~~~~l~e~l~~~~~~LlpiFFv~iGm~Idl~~L~~~~-~lilllv 905 (1173)
+++.+.++ ++..+++++.|++++|.- ..+...+.++.+.++-+.+|-.+.=|++.+..+.+.+ +++++++
T Consensus 235 ~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~l~lpl~viL~ 314 (404)
T COG0786 235 KIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELADLALPLLVILA 314 (404)
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 34555544 678899999999999842 2223344555667788888877777888887776533 4444444
Q ss_pred HHHHHHHHHHHHHHHHhcCCChhhhhh
Q 001051 906 GLLIGGKTILVALVGRLFGVSVISAIR 932 (1173)
Q Consensus 906 vllvv~K~l~v~l~~~l~g~~~real~ 932 (1173)
+-.++.-+...++..+..|.++..+..
T Consensus 315 vQ~i~m~lfa~fvtfr~mG~~YdAaV~ 341 (404)
T COG0786 315 VQTIVMALFAIFVTFRLMGKNYDAAVL 341 (404)
T ss_pred HHHHHHHHHHHHHHHHHhCcchhHHHH
Confidence 444455566777788888888766554
No 43
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.46 E-value=0.00015 Score=75.55 Aligned_cols=82 Identities=10% Similarity=0.037 Sum_probs=66.3
Q ss_pred cccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchH
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni 1088 (1173)
.++++|+|+|++|...++.|.+.|..|++|++ +..+.+.+.+. +. .+...+++.++++++.|+++|+|++.|.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp--~~~~~l~~l~~--i~---~~~~~~~~~dl~~a~lViaaT~d~e~N~ 85 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP--EICKEMKELPY--IT---WKQKTFSNDDIKDAHLIYAATNQHAVNM 85 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC--ccCHHHHhccC--cE---EEecccChhcCCCceEEEECCCCHHHHH
Confidence 35689999999999999999999999999964 44444444331 11 2456778889999999999999999999
Q ss_pred HHHHHHHhh
Q 001051 1089 RTVWALSKY 1097 (1173)
Q Consensus 1089 ~iv~~ar~l 1097 (1173)
.++..+++.
T Consensus 86 ~i~~~a~~~ 94 (157)
T PRK06719 86 MVKQAAHDF 94 (157)
T ss_pred HHHHHHHHC
Confidence 999999875
No 44
>COG2855 Predicted membrane protein [Function unknown]
Probab=97.30 E-value=0.26 Score=57.11 Aligned_cols=120 Identities=14% Similarity=0.226 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHH--hcCCCchHHHHHHHHHhhcccccccccC----chhHHHHHHHHHHHHHHHHhhcCChhHHHhc
Q 001051 607 LWLLLASVIFVPIFQ--KIPGGSPVLGYLAAGILIGPYGLSIIRH----VHGTKAIAEFGVVFLLFNIGLELSVERLSSM 680 (1173)
Q Consensus 607 ~lLLl~A~ilg~L~~--Rl~~lP~IvG~LLaGILLGP~gLgli~~----~~~~~~LaeLGL~~LLF~aGLEldl~~Lrr~ 680 (1173)
+.+..+++.++..+. .. ++|+.+--|+.||++|++.-..-+. ...-+.+.++|+++ -|.++++.++...
T Consensus 17 ~~ia~~a~~l~~~~~~~~~-~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvL----lG~~ltl~~i~~~ 91 (334)
T COG2855 17 ALIAGLAMLLGAFFFSIHL-GLSALTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVL----LGFRLTLSDIADV 91 (334)
T ss_pred HHHHHHHHHHhchHHhhhc-CchHHHHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHHH----HcceeeHHHHHHc
Confidence 334444555554443 34 6889999999999999532111111 12346777888765 4888999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHHHHHH
Q 001051 681 KKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQV 732 (1173)
Q Consensus 681 ~k~il~La~~~vllt~~~vgll~~~llGls~~~ALlLGaiLS~TSpaVVv~v 732 (1173)
+...+.+....+..+++ +++++.-++|+++..++++|...+....+.++.+
T Consensus 92 G~~~v~~~~~~l~~t~~-~~~~lg~~lgld~~~a~Lia~GssICGasAiaA~ 142 (334)
T COG2855 92 GGSGVLIIAITLSSTFL-FAYFLGKLLGLDKKLALLIAAGSSICGASAIAAT 142 (334)
T ss_pred CccHHHHHHHHHHHHHH-HHHHHHHHhCCCHHHHHHHHccchhhHHHHHHHh
Confidence 98887776666665554 4444444889999999999988777666555444
No 45
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=97.22 E-value=0.28 Score=57.02 Aligned_cols=147 Identities=20% Similarity=0.217 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHhch--hHHHHHHHHHHhhcccc-hhHHHHHhHhhHHHHHHHHHHHHHhcccChhhhhh---hhhhHH
Q 001051 829 LLVILGTSLLTARAGL--SMALGAFLAGLLLAETE-FSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLS---NFPVIT 902 (1173)
Q Consensus 829 Lal~lg~~~lae~lGL--S~vLGAFvAGLiLsn~~-~~~~l~e~l~~~~~~LlpiFFv~iGm~Idl~~L~~---~~~lil 902 (1173)
+.++++..+++..+++ ..++|+++.+.++.-.. ....+.. .+..+...+.=..+|.+++...+.. .++..+
T Consensus 161 ~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P~---~l~~~aqv~iG~~iG~~f~~~~l~~~~~~~~~~l 237 (318)
T PF05145_consen 161 ALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLPP---WLVNAAQVLIGASIGSRFTRETLRELRRLLPPAL 237 (318)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHH
Confidence 3444555566666665 35677777766665431 1111111 1223333344456888888766644 233344
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhhcccCCcchhhHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHhh
Q 001051 903 GALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGISMALTPWLAAG 982 (1173)
Q Consensus 903 llvvllvv~K~l~v~l~~~l~g~~~real~lGl~LaprGevalvla~lAl~~giis~el~silvlvVvlS~iItPiL~~~ 982 (1173)
+..++.++.-.+..++..+++++++.+.+. .++|.|.-++.+......... .-+...=++=+++-.++.|++.++
T Consensus 238 ~~~~~~l~~~~~~a~~l~~~~~~~~~t~~L---a~aPGGl~eM~l~A~~l~~d~--~~V~~~q~~Rl~~v~~~~p~~~r~ 312 (318)
T PF05145_consen 238 LSTLLLLALCALFAWLLSRLTGIDFLTALL---ATAPGGLAEMALIALALGADV--AFVAAHQVVRLLFVLLLAPFIARW 312 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHH---HhCCccHHHHHHHHHHcCCCh--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666777788888899999877663 468999888877665554421 111111122233344556777765
Q ss_pred h
Q 001051 983 G 983 (1173)
Q Consensus 983 ~ 983 (1173)
.
T Consensus 313 ~ 313 (318)
T PF05145_consen 313 L 313 (318)
T ss_pred H
Confidence 4
No 46
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=97.03 E-value=0.49 Score=54.95 Aligned_cols=106 Identities=16% Similarity=0.198 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCChhHHHhchhhH---HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHHH
Q 001051 653 TKAIAEFGVVFLLFNIGLELSVERLSSMKKYV---FGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVV 729 (1173)
Q Consensus 653 ~~~LaeLGL~~LLF~aGLEldl~~Lrr~~k~i---l~La~~~vllt~~~vgll~~~llGls~~~ALlLGaiLS~TSpaVV 729 (1173)
.+....+++..++|..|+.++.+++++..+.. +..-...+++.. ++++....+.+......+..|..+...-|..+
T Consensus 29 ~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~P-ll~~~~~~l~~~~~~~~l~~Gl~~~~~lPtTv 107 (313)
T PF13593_consen 29 PEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFP-LLGFGLSRLFPAFLPPELALGLLILACLPTTV 107 (313)
T ss_pred hhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHH-HHHHHHHHHhhccCCHHHHHHHHHHhhCCchh
Confidence 35777888999999999999999999754432 222222222222 23333444443222333555554443333322
Q ss_pred -HH-HHHhcCCCCCchhHHHHHHHhhhhHHHHHHH
Q 001051 730 -LQ-VLQERGESTSRHGRATFSVLLFQDLAVVVLL 762 (1173)
Q Consensus 730 -v~-vL~elg~l~s~~grl~Ls~sllnDi~aIvlf 762 (1173)
.. ++.... +.+. ..++..+.+..+.++++.
T Consensus 108 ~S~v~~T~~A--gGN~-a~Al~~~~~snllgv~lt 139 (313)
T PF13593_consen 108 SSSVVLTRLA--GGNV-ALALFNAVLSNLLGVFLT 139 (313)
T ss_pred hHHHHHHHHc--CCCH-HHHHHHHHHHhhhhHhHH
Confidence 22 122221 1111 344455677777777766
No 47
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=97.03 E-value=0.011 Score=66.88 Aligned_cols=131 Identities=17% Similarity=0.144 Sum_probs=71.4
Q ss_pred HHHHHHHHHhhcccchhHHHHHhHhhHHHHHHHHHHHHHhcccChhhhhhh-hhhHHHHHHHHHHHHHHHHHHHHHhcC-
Q 001051 847 ALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSN-FPVITGALGLLIGGKTILVALVGRLFG- 924 (1173)
Q Consensus 847 vLGAFvAGLiLsn~~~~~~l~e~l~~~~~~LlpiFFv~iGm~Idl~~L~~~-~~lilllvvllvv~K~l~v~l~~~l~g- 924 (1173)
.+-.++.|++++|-+ +++.+.+.+-...++|+|-..+|..+|++.++.. +.-+++-+ ..++.-.+..++.-++.+
T Consensus 174 ~ilPlliG~ilGNLD--~~~r~fl~~~~~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl-~v~~vtG~~~~~~dr~~~g 250 (314)
T TIGR00793 174 AVLPFLVGFALGNLD--PELRDFFSKAVQTLIPFFAFALGNTIDLGVIIQTGLLGILLGV-SVIILTGIPLILADKFIGG 250 (314)
T ss_pred HHHHHHHHHHHhcCC--HHHHHHhccCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHH-HHHHHHhHHHHHHHHHhcC
Confidence 456788899999854 3455666677789999999999999999888653 33222212 222233344555555553
Q ss_pred CChhhhhhhhhcccCCcchhhHHHHHHHhhc---cchhhhHHHHHHHHHHHHHHHHHHHhhh
Q 001051 925 VSVISAIRTGLLLAPGGEFAFVAFGEAVNQG---IMSSQLSSLLFLLVGISMALTPWLAAGG 983 (1173)
Q Consensus 925 ~~~real~lGl~LaprGevalvla~lAl~~g---iis~el~silvlvVvlS~iItPiL~~~~ 983 (1173)
.+....+..+. .-|--....+.++.-.. ...+.-...+..++++|.+++|++..|.
T Consensus 251 ~~g~aG~A~ss---tAGnAvatPaavA~adPs~~~~a~~ATaqvAaavivTaiL~Pilta~~ 309 (314)
T TIGR00793 251 GDGTAGIAASS---SAGAAVATPVLIAEMVPAFKPVAPAATALVATSVIVTSLLVPIATVWW 309 (314)
T ss_pred CCCchhhHHHH---HHHHhhhhHHHHHHhChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222211 11111111111211111 1112222334557888999999998764
No 48
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=96.99 E-value=0.27 Score=56.78 Aligned_cols=103 Identities=17% Similarity=0.123 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHHHHHHhhcCChhHHHhch---hhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHH
Q 001051 652 GTKAIAEFGVVFLLFNIGLELSVERLSSMK---KYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAV 728 (1173)
Q Consensus 652 ~~~~LaeLGL~~LLF~aGLEldl~~Lrr~~---k~il~La~~~vllt~~~vgll~~~llGls~~~ALlLGaiLS~TSpaV 728 (1173)
+......+++.++||..|+.++.+++++.. +..+.....++++.. .+++...+++. .+..+..|.++..+.|..
T Consensus 35 ~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmP-lla~~~~~~~~--l~~~l~~Gl~ll~~~Pgg 111 (319)
T COG0385 35 WLGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMP-LLALLLAKLFP--LPPELAVGLLLLGCCPGG 111 (319)
T ss_pred hhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHH-HHHHHHHHHcC--CCHHHHHhHHheeeCCCc
Confidence 334456889999999999999999988644 334433334444332 24444444444 444556666655555543
Q ss_pred HHHHH-HhcCCCCCchhHHH--HHHHhhhhHHHHHHH
Q 001051 729 VLQVL-QERGESTSRHGRAT--FSVLLFQDLAVVVLL 762 (1173)
Q Consensus 729 Vv~vL-~elg~l~s~~grl~--Ls~sllnDi~aIvlf 762 (1173)
+.... ..+- .|... ++.+.+..+.++++.
T Consensus 112 v~S~~~t~lA-----kGnValsV~~tsvStll~~f~t 143 (319)
T COG0385 112 VASNAMTYLA-----KGNVALSVCSTSVSTLLGPFLT 143 (319)
T ss_pred hhHHHHHHHh-----cCcHHHHHHHHHHHHHHHHHHH
Confidence 33322 1111 12333 334556666666554
No 49
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.89 E-value=0.0033 Score=68.18 Aligned_cols=83 Identities=12% Similarity=0.092 Sum_probs=63.7
Q ss_pred cccccccCCCccHHHHHHHHHhCCCCeEEecCCc-hHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcch
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRS-DRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~-e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~N 1087 (1173)
.++++|+|+|++|...++.|.+.|.++++|+++. +.+..+.+.+. +.+ .+..++..++.+++.||++|+|++.|
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~-i~~----~~~~~~~~~l~~adlViaaT~d~elN 84 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGK-IRW----KQKEFEPSDIVDAFLVIAATNDPRVN 84 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCC-EEE----EecCCChhhcCCceEEEEcCCCHHHH
Confidence 3578999999999999999999999999998774 23344433332 222 12345567788999999999999999
Q ss_pred HHHHHHHHh
Q 001051 1088 YRTVWALSK 1096 (1173)
Q Consensus 1088 i~iv~~ar~ 1096 (1173)
..+...+++
T Consensus 85 ~~i~~~a~~ 93 (202)
T PRK06718 85 EQVKEDLPE 93 (202)
T ss_pred HHHHHHHHh
Confidence 999888854
No 50
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=96.71 E-value=0.0056 Score=66.32 Aligned_cols=108 Identities=19% Similarity=0.145 Sum_probs=77.6
Q ss_pred ccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhC-CCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchH
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL-DLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~-g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni 1088 (1173)
.+++|+|+|.+|..+++.|.+.|.+|++.|.+++.++.+.+. |...+ |. ++. ...++|.++-+... |+
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v--~~--~~l----~~~~~Dv~vp~A~~---~~ 97 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVV--AP--EEI----YSVDADVFAPCALG---GV 97 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE--cc--hhh----ccccCCEEEecccc---cc
Confidence 469999999999999999999999999999999988877654 43322 22 222 22368887744332 34
Q ss_pred HHHHHHHhhCCCceEEEEecC----hhhHHHHHHCCCCeeecCCcHH
Q 001051 1089 RTVWALSKYFPNVKTFVRAHD----IDHGLNLEKAGATAVVPETLEP 1131 (1173)
Q Consensus 1089 ~iv~~ar~l~p~~~IIara~d----~e~~~~L~~aGAd~VI~p~~~a 1131 (1173)
.....++++..+ .|+..+++ +++.++|++.|+.. .|...+
T Consensus 98 I~~~~~~~l~~~-~v~~~AN~~~~~~~~~~~L~~~Gi~~--~Pd~~~ 141 (200)
T cd01075 98 INDDTIPQLKAK-AIAGAANNQLADPRHGQMLHERGILY--APDYVV 141 (200)
T ss_pred cCHHHHHHcCCC-EEEECCcCccCCHhHHHHHHHCCCEE--eCceee
Confidence 455556666654 57778888 89999999999864 454444
No 51
>PRK11281 hypothetical protein; Provisional
Probab=96.64 E-value=4.8 Score=54.12 Aligned_cols=20 Identities=30% Similarity=0.225 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 001051 224 TMALSLAEARLQVAIESLQD 243 (1173)
Q Consensus 224 ~~~~~~a~~~~~~~~~~~~~ 243 (1173)
.-.++-|..|+|.+...+.+
T Consensus 162 Q~~lsea~~RlqeI~~~L~~ 181 (1113)
T PRK11281 162 QAALYANSQRLQQIRNLLKG 181 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 33556666677777665554
No 52
>PRK04148 hypothetical protein; Provisional
Probab=96.56 E-value=0.0074 Score=61.39 Aligned_cols=90 Identities=14% Similarity=0.066 Sum_probs=73.3
Q ss_pred ccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchHH
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYR 1089 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni~ 1089 (1173)
.+++.+|.| +|..++..|.+.|++|+.+|.|++.++.+++.+.+++.+|..+++.=.- ++|+.+...-+-++----
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y---~~a~liysirpp~el~~~ 93 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIY---KNAKLIYSIRPPRDLQPF 93 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHH---hcCCEEEEeCCCHHHHHH
Confidence 468999999 9999999999999999999999999999999999999999998865332 357887777776665555
Q ss_pred HHHHHHhhCCCceE
Q 001051 1090 TVWALSKYFPNVKT 1103 (1173)
Q Consensus 1090 iv~~ar~l~p~~~I 1103 (1173)
+...+++.+.++.|
T Consensus 94 ~~~la~~~~~~~~i 107 (134)
T PRK04148 94 ILELAKKINVPLII 107 (134)
T ss_pred HHHHHHHcCCCEEE
Confidence 66667777665433
No 53
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.48 E-value=0.072 Score=67.21 Aligned_cols=127 Identities=14% Similarity=0.128 Sum_probs=81.5
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcCChhHHHhchhhHHHHHHHHH
Q 001051 613 SVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQV 692 (1173)
Q Consensus 613 A~ilg~L~~Rl~~lP~IvG~LLaGILLGP~gLgli~~~~~~~~LaeLGL~~LLF~aGLEldl~~Lrr~~k~il~La~~~v 692 (1173)
.+..+.+...+ ++++++|-.++|++++.+-... .-...++.+..+.+++++..+|+.+|+..+...+..++.+.+..+
T Consensus 228 v~~~a~la~~~-Gls~~lGAFlAGl~l~~~~~~~-~le~~i~pf~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~~~ 305 (621)
T PRK03562 228 VFGFGLLMEEV-GLSMALGAFLAGVLLASSEYRH-ALESDIEPFKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLGFL 305 (621)
T ss_pred HHHHHHHHHHh-CccHHHHHHHHHHHhcCCccHH-HHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 33344566677 8999999999999998532110 012334556778888888889999999988766555443333322
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHhhccccCcH-H-HHHHHHHhcCCCCCc
Q 001051 693 LVTAVVVGLVAHFVSGLPGPASIVIGNGLALSST-A-VVLQVLQERGESTSR 742 (1173)
Q Consensus 693 llt~~~vgll~~~llGls~~~ALlLGaiLS~TSp-a-VVv~vL~elg~l~s~ 742 (1173)
++= ++..++...++|+++..++.+|+.++.-+. + ++..+-.+.+..+..
T Consensus 306 ~~K-~~~~~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~ 356 (621)
T PRK03562 306 AIK-IAMLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPE 356 (621)
T ss_pred HHH-HHHHHHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHH
Confidence 222 234445556789999999999998885444 2 333444555554433
No 54
>COG0679 Predicted permeases [General function prediction only]
Probab=96.45 E-value=1.9 Score=49.95 Aligned_cols=135 Identities=22% Similarity=0.215 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHHhhcc--cchhHHHHHhHhhHHHHHHHHHHHHHhcccChhhhhhh-hhhHHHHHHHHHHHHHHHHHHHH
Q 001051 844 LSMALGAFLAGLLLAE--TEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSN-FPVITGALGLLIGGKTILVALVG 920 (1173)
Q Consensus 844 LS~vLGAFvAGLiLsn--~~~~~~l~e~l~~~~~~LlpiFFv~iGm~Idl~~L~~~-~~lilllvvllvv~K~l~v~l~~ 920 (1173)
.+|.+=+++.|+++.. -+..+.+.+.++.+.+.-.|+-++.+|+.++....... .+.+......-++.-++..++..
T Consensus 167 ~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~~~~kll~~Pl~~~~~~ 246 (311)
T COG0679 167 TNPLIIALILGLLLNLLGISLPAPLDTAVDLLASAASPLALIALGLSLAFLKLKGSKPPIILIALSLKLLLAPLVALLVA 246 (311)
T ss_pred hCcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777774 33555677777778889999999999999998444332 33333334445777888888889
Q ss_pred HhcCCChhhhhhhhh-cccCCcchhhHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHh
Q 001051 921 RLFGVSVISAIRTGL-LLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGISMALTPWLAA 981 (1173)
Q Consensus 921 ~l~g~~~real~lGl-~LaprGevalvla~lAl~~giis~el~silvlvVvlS~iItPiL~~ 981 (1173)
+.+|++..+....=+ ...|.+....+ ++.+.+.-.+...+.+++...++.+..|.+..
T Consensus 247 ~~~~l~~~~~~v~vl~~a~P~A~~~~v---~a~~~~~~~~laa~~i~ist~ls~~t~p~~~~ 305 (311)
T COG0679 247 KLLGLSGLALQVLVLLSAMPTAVNAYV---LARQYGGDPRLAASTILLSTLLSLLTLPLLIL 305 (311)
T ss_pred HHcCCChHHHHHHHHHhhCcHHhHHHH---HHHHhCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887654421111 12344443333 34455555556666777777777777766554
No 55
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.43 E-value=0.087 Score=66.26 Aligned_cols=124 Identities=15% Similarity=0.146 Sum_probs=80.9
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcCChhHHHhchhhHHHHHHHHHH
Q 001051 614 VIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVL 693 (1173)
Q Consensus 614 ~ilg~L~~Rl~~lP~IvG~LLaGILLGP~gLgli~~~~~~~~LaeLGL~~LLF~aGLEldl~~Lrr~~k~il~La~~~vl 693 (1173)
+..+.+...+ |+++++|-.++|++++.+-.. ..-...++.+..+.+.+++...|+.+|+..+...+..++.+.++.++
T Consensus 226 l~~a~l~~~~-Gls~~LGAFlaGl~l~~s~~~-~~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~ 303 (601)
T PRK03659 226 LGSALFMDAL-GLSMALGTFIAGVLLAESEYR-HELEIAIEPFKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLVA 303 (601)
T ss_pred HHHHHHHHHh-CccHHHHHHHHHHHhcCCchH-HHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHHHH
Confidence 3444566677 999999999999999964211 00122355677888889999999999999888776544433333222
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHhhccccCcH-H-HHHHHHHhcCCCC
Q 001051 694 VTAVVVGLVAHFVSGLPGPASIVIGNGLALSST-A-VVLQVLQERGEST 740 (1173)
Q Consensus 694 lt~~~vgll~~~llGls~~~ALlLGaiLS~TSp-a-VVv~vL~elg~l~ 740 (1173)
+= .+..++...++|+++..++.+|+.++..+. + ++...-.+.+..+
T Consensus 304 ~K-~~~~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~ 351 (601)
T PRK03659 304 VK-GLVLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQ 351 (601)
T ss_pred HH-HHHHHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCC
Confidence 22 233444556779999999999988776554 2 3333334555544
No 56
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=96.36 E-value=0.017 Score=65.58 Aligned_cols=106 Identities=10% Similarity=0.049 Sum_probs=75.1
Q ss_pred cccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCC----HHHHhhcCccccCEEEEecCCCcc
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGS----REVLHKVGAERACAAAITLDTPGA 1086 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd----~e~Le~agI~~A~~VVi~t~Dd~~ 1086 (1173)
++.|+|.|.+|..++..|.+.|++|++++++++..+.+++.|..+-.|+... ...... ++.+|.|++++.....
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~d~vila~k~~~~ 79 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAE--LGPQDLVILAVKAYQL 79 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhH--cCCCCEEEEecccccH
Confidence 4789999999999999999999999999999998888877776541222110 111222 3689999999988765
Q ss_pred hHHHHHHHHhhCCCceEEEEecChhhHHHHHH
Q 001051 1087 NYRTVWALSKYFPNVKTFVRAHDIDHGLNLEK 1118 (1173)
Q Consensus 1087 Ni~iv~~ar~l~p~~~IIara~d~e~~~~L~~ 1118 (1173)
.-.+......+.++..|+...+...+.+.+.+
T Consensus 80 ~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~ 111 (304)
T PRK06522 80 PAALPSLAPLLGPDTPVLFLQNGVGHLEELAA 111 (304)
T ss_pred HHHHHHHhhhcCCCCEEEEecCCCCcHHHHHH
Confidence 55444444445566677777777665555554
No 57
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=96.34 E-value=2 Score=50.34 Aligned_cols=99 Identities=9% Similarity=0.072 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhhcCChhHHHhchhh---HHHHHHHHHHHHHHHHHHHHHH-HhCCChHHHHHHhhccccCcHHHHHHH-
Q 001051 658 EFGVVFLLFNIGLELSVERLSSMKKY---VFGLGSAQVLVTAVVVGLVAHF-VSGLPGPASIVIGNGLALSSTAVVLQV- 732 (1173)
Q Consensus 658 eLGL~~LLF~aGLEldl~~Lrr~~k~---il~La~~~vllt~~~vgll~~~-llGls~~~ALlLGaiLS~TSpaVVv~v- 732 (1173)
.++++++||-.|++++++++++..++ .....+.++++.-+ +++.+.. +++.++ .+.+|.++....|..+...
T Consensus 46 ~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Pl-la~~l~~l~~~~~p--~l~~GliLv~~~Pgg~~S~v 122 (328)
T TIGR00832 46 AIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPF-LMFLLAWLFLRDLF--EYIAGLILLGLARCIAMVFV 122 (328)
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHH-HHHHHHHHHcCCCH--HHHHHHHHHHhcchHHHHHH
Confidence 34566899999999999988875543 33333344443333 3443333 345554 3677777666666544443
Q ss_pred HHhcCCCCCchhHHHHHHHhhhhHHHHHHH
Q 001051 733 LQERGESTSRHGRATFSVLLFQDLAVVVLL 762 (1173)
Q Consensus 733 L~elg~l~s~~grl~Ls~sllnDi~aIvlf 762 (1173)
+......+. -+.+..+.++-+.++++.
T Consensus 123 ~T~lAkGnv---alsv~lt~~stLl~~~~~ 149 (328)
T TIGR00832 123 WNQLAKGDP---EYTLVLVAVNSLFQVFLY 149 (328)
T ss_pred HHHHcCCCH---HHHHHHHHHHHHHHHHHH
Confidence 333322111 233344566666666555
No 58
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=96.26 E-value=0.0071 Score=63.34 Aligned_cols=101 Identities=15% Similarity=0.075 Sum_probs=65.7
Q ss_pred cccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchH
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni 1088 (1173)
-++++|+|||..|+.+|+.|+..|..|+|.|.||-+.-++.-.|+.+.. ++++ +..+|.+|.+|++. ++
T Consensus 23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~--------~~~a-~~~adi~vtaTG~~--~v 91 (162)
T PF00670_consen 23 GKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMT--------LEEA-LRDADIFVTATGNK--DV 91 (162)
T ss_dssp TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE---------HHHH-TTT-SEEEE-SSSS--SS
T ss_pred CCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecC--------HHHH-HhhCCEEEECCCCc--cc
Confidence 3579999999999999999999999999999999988788888998762 3333 45789999999884 33
Q ss_pred HHHHHHHhhCCCceEEEEec---ChhhHHHHHHCCC
Q 001051 1089 RTVWALSKYFPNVKTFVRAH---DIDHGLNLEKAGA 1121 (1173)
Q Consensus 1089 ~iv~~ar~l~p~~~IIara~---d~e~~~~L~~aGA 1121 (1173)
......+.+-.+ -|++-+- ++-+.+.|++.+.
T Consensus 92 i~~e~~~~mkdg-ail~n~Gh~d~Eid~~~L~~~~~ 126 (162)
T PF00670_consen 92 ITGEHFRQMKDG-AILANAGHFDVEIDVDALEANAV 126 (162)
T ss_dssp B-HHHHHHS-TT-EEEEESSSSTTSBTHHHHHTCTS
T ss_pred cCHHHHHHhcCC-eEEeccCcCceeEeeccccccCc
Confidence 444445545444 4555332 3345666666643
No 59
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=96.11 E-value=3.7 Score=47.12 Aligned_cols=98 Identities=14% Similarity=0.178 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhhcCChhHHHhchhh--HHHHHHH-HHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcH-HHHHHHHH
Q 001051 659 FGVVFLLFNIGLELSVERLSSMKKY--VFGLGSA-QVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSST-AVVLQVLQ 734 (1173)
Q Consensus 659 LGL~~LLF~aGLEldl~~Lrr~~k~--il~La~~-~vllt~~~vgll~~~llGls~~~ALlLGaiLS~TSp-aVVv~vL~ 734 (1173)
..+.++||..|+.++.+++++..++ ....+++ .+++..+ +++....+++.+.. ...|.++..+.| ++...++.
T Consensus 12 ~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Pl-la~~l~~~~~l~~~--~~~glvL~~~~P~~~~s~v~t 88 (286)
T TIGR00841 12 ILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPL-TGFLLAKVFKLPPE--LAVGVLIVGCCPGGTASNVFT 88 (286)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHH-HHHHHHHHhCCCHH--HHHHHHheeeCCCchHHHHHH
Confidence 3388899999999999999886652 3333333 3433332 33444445666543 334444333333 33334444
Q ss_pred hcCCCCCchhHHHHHHHhhhhHHHHHHH
Q 001051 735 ERGESTSRHGRATFSVLLFQDLAVVVLL 762 (1173)
Q Consensus 735 elg~l~s~~grl~Ls~sllnDi~aIvlf 762 (1173)
..-..+. .+..+...++-+.+++..
T Consensus 89 ~~~~gn~---~la~~~~~~stlls~vt~ 113 (286)
T TIGR00841 89 YLLKGDM---ALSISMTTCSTLLALGMM 113 (286)
T ss_pred HHhCCCH---hhhhHHHHHHHHHHHHHH
Confidence 4322232 333333445555555444
No 60
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=96.09 E-value=0.11 Score=59.87 Aligned_cols=154 Identities=20% Similarity=0.163 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHH----HhchhHHHHHHHHHHhhcc-cc-hhHHHHHhHhhHHHHHHHHHHHHHhcccChhhhhhhhh-hH
Q 001051 829 LLVILGTSLLTA----RAGLSMALGAFLAGLLLAE-TE-FSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFP-VI 901 (1173)
Q Consensus 829 Lal~lg~~~lae----~lGLS~vLGAFvAGLiLsn-~~-~~~~l~e~l~~~~~~LlpiFFv~iGm~Idl~~L~~~~~-li 901 (1173)
+++....+++++ ..++++.+=|.+.|++++| .. ..+....-++.....++.+=-++.|.++++..+.+.-+ .+
T Consensus 7 ~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~~~G~~~~ 86 (305)
T PF03601_consen 7 FAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDILALGWKGL 86 (305)
T ss_pred HHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHHHhCccHH
Confidence 344444455544 4788999999999999999 43 33444443443455777777888999999998876333 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhhcccCCcchhhHHHHHHHhhccchhhhH---HHHHHHHHHHHHHHHH
Q 001051 902 TGALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLS---SLLFLLVGISMALTPW 978 (1173)
Q Consensus 902 lllvvllvv~K~l~v~l~~~l~g~~~real~lGl~LaprGevalvla~lAl~~giis~el~---silvlvVvlS~iItPi 978 (1173)
+..++.+.+.-.++.++..+++|++++.+..++.+.+.=|.-+++...-..... ++++- ..+++.-.+.+++-|+
T Consensus 87 ~~~~~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~--~~~~a~ava~V~lfg~vam~~~P~ 164 (305)
T PF03601_consen 87 LIIIIVVILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKAK--EEDVAYAVATVFLFGTVAMFLYPL 164 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccCC--CCceeeeehHHHHHHHHHHHHHHH
Confidence 333333333333444444499999999999999887766655544433222221 22222 2333334556677788
Q ss_pred HHhhhh
Q 001051 979 LAAGGQ 984 (1173)
Q Consensus 979 L~~~~~ 984 (1173)
+.++..
T Consensus 165 l~~~l~ 170 (305)
T PF03601_consen 165 LGHALG 170 (305)
T ss_pred HHHHhC
Confidence 876543
No 61
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.97 E-value=0.014 Score=63.42 Aligned_cols=83 Identities=14% Similarity=0.039 Sum_probs=67.4
Q ss_pred ccccccCCCccHHHHHHHHHhCCCCeEEecCCch-HHHhhhhC-CCCEEEecCCCHHHHhhcCccccCEEEEecCCCcch
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSD-RVAIGRAL-DLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e-~ve~l~~~-g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~N 1087 (1173)
++++|+|+|.+|..-++.|.+.|..|+||+++.. .++.+.+. .+..+.++..... +.+++.|+++|+|++.|
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~d------l~~~~lVi~at~d~~ln 83 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADI------LEGAFLVIAATDDEELN 83 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHH------hCCcEEEEECCCCHHHH
Confidence 4789999999999999999999999999998853 44555444 4566667776332 46799999999999999
Q ss_pred HHHHHHHHhhC
Q 001051 1088 YRTVWALSKYF 1098 (1173)
Q Consensus 1088 i~iv~~ar~l~ 1098 (1173)
..+...+++.+
T Consensus 84 ~~i~~~a~~~~ 94 (205)
T TIGR01470 84 RRVAHAARARG 94 (205)
T ss_pred HHHHHHHHHcC
Confidence 99999998764
No 62
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=95.95 E-value=0.14 Score=66.72 Aligned_cols=85 Identities=12% Similarity=0.137 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHhhcCChhHHHhchhhHH--HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHH--HHH
Q 001051 655 AIAEFGVVFLLFNIGLELSVERLSSMKKYVF--GLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTA--VVL 730 (1173)
Q Consensus 655 ~LaeLGL~~LLF~aGLEldl~~Lrr~~k~il--~La~~~vllt~~~vgll~~~llGls~~~ALlLGaiLS~TSpa--VVv 730 (1173)
+...+.+++++...|+++|+..+.......+ .+.++.++.= ++.+++..+++|+++..++.+|++++.-.-. +++
T Consensus 322 ~~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK-~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~ 400 (832)
T PLN03159 322 FVSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGK-IMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVL 400 (832)
T ss_pred HHHHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHH
Confidence 3356778888888999999988753221111 1111111111 2234455567899999999999998875543 233
Q ss_pred HHHHhcCCCC
Q 001051 731 QVLQERGEST 740 (1173)
Q Consensus 731 ~vL~elg~l~ 740 (1173)
.+-.+.+.++
T Consensus 401 ~ig~~~gvi~ 410 (832)
T PLN03159 401 NVGRDQEVLD 410 (832)
T ss_pred HHHHhcCccC
Confidence 3444555444
No 63
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=95.90 E-value=0.15 Score=57.36 Aligned_cols=109 Identities=23% Similarity=0.323 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHhhcccchhH-HHHHhHhhHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHH
Q 001051 832 ILGTSLLTARAGLSMALGAFLAGLLLAETEFSL-QVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIG 910 (1173)
Q Consensus 832 ~lg~~~lae~lGLS~vLGAFvAGLiLsn~~~~~-~l~e~l~~~~~~LlpiFFv~iGm~Idl~~L~~~~~lilllvvllvv 910 (1173)
++....++..++++++++-+++|++++..-... .-.+.++.+..+-..++....|+++|++.+...+...+.+....++
T Consensus 4 a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~~~~ 83 (273)
T TIGR00932 4 AVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFGVGVLQVL 83 (273)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 344457788999999999999999998643211 1112345566777778888999999999988766444333333333
Q ss_pred HH-HHHHHHHHHhcCCChhhhhhhhhcccCC
Q 001051 911 GK-TILVALVGRLFGVSVISAIRTGLLLAPG 940 (1173)
Q Consensus 911 ~K-~l~v~l~~~l~g~~~real~lGl~Lapr 940 (1173)
.- .+..+...++++.++.+++.+|..+++-
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~T 114 (273)
T TIGR00932 84 VPGVLLGLLLGHLLGLALGAAVVIGIILALS 114 (273)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 33 3334445667789999998888876543
No 64
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=95.80 E-value=12 Score=50.48 Aligned_cols=17 Identities=12% Similarity=0.331 Sum_probs=7.9
Q ss_pred HHHHHhhhHHHHHHHHH
Q 001051 290 ELRRLQSKKEELQKEVD 306 (1173)
Q Consensus 290 ~l~~~~~~~~~~q~~~~ 306 (1173)
++.++|.+.+.||+.++
T Consensus 216 ~~~~l~~~~~~Lq~~in 232 (1109)
T PRK10929 216 RSQQLDAYLQALRNQLN 232 (1109)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444445554443
No 65
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=95.72 E-value=6.1 Score=46.58 Aligned_cols=162 Identities=15% Similarity=0.163 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC------CCchHHHHHHHHHhhcccccccccCch--h------HHHHHHHHHHHHHH
Q 001051 601 ASLFDVLWLLLASVIFVPIFQKIP------GGSPVLGYLAAGILIGPYGLSIIRHVH--G------TKAIAEFGVVFLLF 666 (1173)
Q Consensus 601 ~~Ll~l~lLLl~A~ilg~L~~Rl~------~lP~IvG~LLaGILLGP~gLgli~~~~--~------~~~LaeLGL~~LLF 666 (1173)
+.+-.++++.+++.+++.+-+|+| +-|+++.++.+-.+.- .|++++.. . -..+.++.++-+.-
T Consensus 46 ~mlg~favm~vlG~llg~IG~riPI~nk~iGG~aIl~~fvaa~~v~---~~llp~~~i~avt~fm~~snFL~fyIA~LI~ 122 (438)
T COG3493 46 DMLGGFAVMFVLGALLGEIGKRIPIVNKYIGGGAILALFVAAYLVF---YNLLPSNVIKAVTNFMGKSNFLDFYIAALIV 122 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCcchhhccCCchHHHHHHHHHHHH---hccCCHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 444567777778899998888774 3355555444433332 23333211 0 12344444444444
Q ss_pred HHhhcCChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhc--------cccCcHHHHHHHHHhcCC
Q 001051 667 NIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNG--------LALSSTAVVLQVLQERGE 738 (1173)
Q Consensus 667 ~aGLEldl~~Lrr~~k~il~La~~~vllt~~~vgll~~~llGls~~~ALlLGai--------LS~TSpaVVv~vL~elg~ 738 (1173)
-.=+.+|.+.|-+...+.+...+.+++.. .+++.+...++|.++...++.-.. -..+....++.-+ .+.
T Consensus 123 GSILgmnRklLIk~~~~~i~~il~g~v~A-~~~g~lVG~~~G~~~~d~~m~~vlPIM~GG~GaGavPLS~iYs~i--tg~ 199 (438)
T COG3493 123 GSILGMNRKLLIKSLKRYIPPILAGMVGA-AAVGILVGLLFGLSFQDTMMYVVLPIMGGGMGAGAVPLSEIYSSI--TGG 199 (438)
T ss_pred hhhhhccHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHhCCChHHeeeeEEeeeccCCCCCCcccHHHHHHHH--cCC
Confidence 44467888888888777776666666544 446666777889988766543211 1111222233332 222
Q ss_pred CCCchhHHHHHHHhhhhHHHHHHHHHHHHH
Q 001051 739 STSRHGRATFSVLLFQDLAVVVLLILIPLI 768 (1173)
Q Consensus 739 l~s~~grl~Ls~sllnDi~aIvlf~ll~~l 768 (1173)
.+..+-..+..+..+.++++|+.-.++..+
T Consensus 200 s~~~~~s~lipal~igNvfAIi~aall~~i 229 (438)
T COG3493 200 SQEEYFSQLIPALTIGNVFAIICAALLNKI 229 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233334445566667777777766666444
No 66
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=95.65 E-value=0.042 Score=57.34 Aligned_cols=108 Identities=16% Similarity=0.174 Sum_probs=72.0
Q ss_pred cccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchHHH
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRT 1090 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni~i 1090 (1173)
++-++|.|..|..+++.|.+.|++|++.|+++++.+++.+.|.... .+-.+..+ +++.|+++++|+..-..+
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~---~s~~e~~~-----~~dvvi~~v~~~~~v~~v 74 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVA---DSPAEAAE-----QADVVILCVPDDDAVEAV 74 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEE---SSHHHHHH-----HBSEEEE-SSSHHHHHHH
T ss_pred EEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhh---hhhhhHhh-----cccceEeecccchhhhhh
Confidence 5678999999999999999999999999999999999988873222 23333333 458999999987554444
Q ss_pred HHH---HHhhCCCceEEEEecC--h----hhHHHHHHCCCCeeecC
Q 001051 1091 VWA---LSKYFPNVKTFVRAHD--I----DHGLNLEKAGATAVVPE 1127 (1173)
Q Consensus 1091 v~~---ar~l~p~~~IIara~d--~----e~~~~L~~aGAd~VI~p 1127 (1173)
... +..+.++ .+++-..+ + +..+.+.+.|+..+--|
T Consensus 75 ~~~~~i~~~l~~g-~iiid~sT~~p~~~~~~~~~~~~~g~~~vdap 119 (163)
T PF03446_consen 75 LFGENILAGLRPG-KIIIDMSTISPETSRELAERLAAKGVRYVDAP 119 (163)
T ss_dssp HHCTTHGGGS-TT-EEEEE-SS--HHHHHHHHHHHHHTTEEEEEEE
T ss_pred hhhhHHhhccccc-eEEEecCCcchhhhhhhhhhhhhccceeeeee
Confidence 443 3334444 56665444 3 34455567788777665
No 67
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=95.64 E-value=0.28 Score=57.17 Aligned_cols=130 Identities=17% Similarity=0.209 Sum_probs=69.2
Q ss_pred HHHHHHHHhhcccchhHHHHHhHhhHHHHHHHHHHHHHhcccChhhhhh-hhhhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 001051 848 LGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLS-NFPVITGALGLLIGGKTILVALVGRLFGVS 926 (1173)
Q Consensus 848 LGAFvAGLiLsn~~~~~~l~e~l~~~~~~LlpiFFv~iGm~Idl~~L~~-~~~lilllvvllvv~K~l~v~l~~~l~g~~ 926 (1173)
+.+++.|+.++| ..+.+.+...+--.+++|++-+..|..++++.+.. .++.+++.+ ..++..+...+...++++..
T Consensus 177 llplliG~~lgn--l~~~l~~~~~~Gi~~lLp~~~~~lG~~l~lq~i~~~G~~GilL~~-~~~~~t~~~~~~~~Rl~~~~ 253 (326)
T PRK05274 177 VLPLLVGFILGN--LDPELRQFLGKAVPVLIPFFAFALGNGIDLGTIITAGLSGILLGV-AVVAVTGIPLYLADRLIGGG 253 (326)
T ss_pred HHHHHHHHHHHh--HHHhhHHHhcCCcEEEHHHHHHHHhcceeHhHHHhcCCcchhhhh-hHhhccchhhHhHhheeecC
Confidence 378888999998 33344455555556699999999999999988755 344333322 22233344344445666432
Q ss_pred hh-hhhhhhhcccCCcchhhHHHHHHHhh---ccchhhhHHHHHHHHHHHHHHHHHHHhhh
Q 001051 927 VI-SAIRTGLLLAPGGEFAFVAFGEAVNQ---GIMSSQLSSLLFLLVGISMALTPWLAAGG 983 (1173)
Q Consensus 927 ~r-eal~lGl~LaprGevalvla~lAl~~---giis~el~silvlvVvlS~iItPiL~~~~ 983 (1173)
.. ..+..+. .-|.-....+.++.-. ....+.....+..++++++++.|++..|.
T Consensus 254 ~g~~g~a~~t---taG~aic~pAAvaa~~p~~~~~~~~at~~VA~~vivt~il~P~l~~~~ 311 (326)
T PRK05274 254 NGVAGAAAGS---TAGNAVATPAAVAAADPSFAPFAPAATAQVAAAVIVTAILAPILTAWW 311 (326)
T ss_pred CCcchHHHHH---HHHHHHHHHHHHHhhccccccchHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1111111 1111111111111111 12234444455567789999999998743
No 68
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=95.58 E-value=4.9 Score=46.55 Aligned_cols=133 Identities=17% Similarity=0.135 Sum_probs=83.7
Q ss_pred hHHHHHHHHHHhhccc--chhHHHHHhHhhHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 001051 845 SMALGAFLAGLLLAET--EFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRL 922 (1173)
Q Consensus 845 S~vLGAFvAGLiLsn~--~~~~~l~e~l~~~~~~LlpiFFv~iGm~Idl~~L~~~~~lilllvvllvv~K~l~v~l~~~l 922 (1173)
+|.+-+.++|+++.-. +....+.+.++.+.+...|+-.+.+|+.++...+...++......++.++.-++.++.....
T Consensus 182 nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~klil~P~i~~~~~~~ 261 (321)
T TIGR00946 182 FPPLWAPLLSVILSLVGFKMPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFLVQPAVMAGISKL 261 (321)
T ss_pred CCChHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666665533 23456667777788889999999999999887765555555666666777777777888877
Q ss_pred cCCChhhhh--hhhhcccCCcchhhHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHh
Q 001051 923 FGVSVISAI--RTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGISMALTPWLAA 981 (1173)
Q Consensus 923 ~g~~~real--~lGl~LaprGevalvla~lAl~~giis~el~silvlvVvlS~iItPiL~~ 981 (1173)
++.+..... .+-. -.|-+... ..++.+++.-.+.....+++..+++.+.-|+...
T Consensus 262 ~~l~~~~~~~~vl~a-a~P~a~~~---~i~A~~y~~~~~~aa~~v~~sT~ls~~tlp~~~~ 318 (321)
T TIGR00946 262 IGLRGLELSVAILQA-ALPGGAVA---AVLATEYEVDVELASTAVTLSTVLSLISLPLFII 318 (321)
T ss_pred hCCChHHHHHHHHHH-cCChhhHH---HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777643322 2211 23444333 3344555544455556666667777777776643
No 69
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.55 E-value=0.082 Score=60.53 Aligned_cols=123 Identities=18% Similarity=0.082 Sum_probs=85.1
Q ss_pred ccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchHH
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYR 1089 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni~ 1089 (1173)
++++|+|+|..|+.+++.|...|.+|++.++++++..++.+.|...+. .+.+.+ -+.++|.|+.+++..-.+
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~-----~~~l~~-~l~~aDiVint~P~~ii~-- 223 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFP-----LNKLEE-KVAEIDIVINTIPALVLT-- 223 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeec-----HHHHHH-HhccCCEEEECCChHHhC--
Confidence 578999999999999999999999999999999887776666654332 222333 245899999998765222
Q ss_pred HHHHHHhhCCCceEEEEecChh--hHHHHHHCCCCeeecC-------CcHHHHHHHHHHHH
Q 001051 1090 TVWALSKYFPNVKTFVRAHDID--HGLNLEKAGATAVVPE-------TLEPSLQLAAAVLA 1141 (1173)
Q Consensus 1090 iv~~ar~l~p~~~IIara~d~e--~~~~L~~aGAd~VI~p-------~~~aa~~LA~~vl~ 1141 (1173)
...+..+.++.-+|=.++++- .-+..++.|+..+..| ...+|..+++.+..
T Consensus 224 -~~~l~~~k~~aliIDlas~Pg~tdf~~Ak~~G~~a~~~~glPg~~ap~ta~~i~~~~~~~ 283 (287)
T TIGR02853 224 -ADVLSKLPKHAVIIDLASKPGGTDFEYAKKRGIKALLAPGLPGIVAPKTAGKILANVLSE 283 (287)
T ss_pred -HHHHhcCCCCeEEEEeCcCCCCCCHHHHHHCCCEEEEeCCCCcccCchhHHHHHHHHHHH
Confidence 223344445555555666542 2378899999999644 44666666666554
No 70
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.54 E-value=0.23 Score=61.89 Aligned_cols=111 Identities=22% Similarity=0.226 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHhchhHHHHHHHHHHhhcccchhH-HHHHhHhhHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHH
Q 001051 829 LLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSL-QVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGL 907 (1173)
Q Consensus 829 Lal~lg~~~lae~lGLS~vLGAFvAGLiLsn~~~~~-~l~e~l~~~~~~LlpiFFv~iGm~Idl~~L~~~~~lilllvvl 907 (1173)
+++++.+..++..++++.++|=+++|++++..-+.. .-.+.+..+..+-+.++...+|+++|++.+.......+...+.
T Consensus 15 l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~~~~~~~la~lGli~llF~~Gle~d~~~l~~~~~~~~~~~~~ 94 (558)
T PRK10669 15 LVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKSIAIPGAIA 94 (558)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHHHHHHhHhcCCHHHHHHHhhHHHHHHHH
Confidence 455556667778899999999999999998643211 0112344566666777778899999998886643222211111
Q ss_pred HHHHHHHHHHHHHHhcCCChhhhhhhhhcccC
Q 001051 908 LIGGKTILVALVGRLFGVSVISAIRTGLLLAP 939 (1173)
Q Consensus 908 lvv~K~l~v~l~~~l~g~~~real~lGl~Lap 939 (1173)
-++.-++..+...+.+++++..++.+|..++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~ 126 (558)
T PRK10669 95 QIAVATLLGMALSAVLGWSLMTGIVFGLCLST 126 (558)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 22222334444556678888888888876544
No 71
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=95.50 E-value=3.5 Score=48.52 Aligned_cols=114 Identities=15% Similarity=0.146 Sum_probs=73.6
Q ss_pred chhHHHHHHHHHHhhcccc-hhHHHHHhHhhHHHHH----HHHHHHHHhcc-cChhhhhhhh-hhHHHHHHHHHHHHHHH
Q 001051 843 GLSMALGAFLAGLLLAETE-FSLQVESDIAPYRGLL----LGLFFMTVGMS-IDPKLLLSNF-PVITGALGLLIGGKTIL 915 (1173)
Q Consensus 843 GLS~vLGAFvAGLiLsn~~-~~~~l~e~l~~~~~~L----lpiFFv~iGm~-Idl~~L~~~~-~lilllvvllvv~K~l~ 915 (1173)
++|+..-..+.|.++.... ..+++++....+..|+ ....|+-+|+. +|++.+.+.+ +..+++++..+++-.++
T Consensus 203 ~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~ 282 (347)
T TIGR00783 203 GIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILG 282 (347)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHH
Confidence 5677888888888887654 4556666555555444 33334445765 7888887755 33455556667778888
Q ss_pred HHHHHHhcCCChhhhh-hhhhcccCCcchh-hHHHHHHHhhcc
Q 001051 916 VALVGRLFGVSVISAI-RTGLLLAPGGEFA-FVAFGEAVNQGI 956 (1173)
Q Consensus 916 v~l~~~l~g~~~real-~lGl~LaprGeva-lvla~lAl~~gi 956 (1173)
.++.+++.|+-+-|+. ..|+.++.+|..+ +.+++.+-..+.
T Consensus 283 s~lvGKllG~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~L 325 (347)
T TIGR00783 283 GAFLGKLMGMYPVESAITAGLCNSGMGGTGDVAVLSASNRMNL 325 (347)
T ss_pred HHHHHHHhCCChHHHHHHHhhhccCCCCCCceeeeehhhhccc
Confidence 9999999998776655 5567787666554 444444444443
No 72
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=95.42 E-value=0.04 Score=60.61 Aligned_cols=113 Identities=18% Similarity=0.052 Sum_probs=77.6
Q ss_pred cccccccCCCccHHHHHHHHHhCCC-CeEEecCCc----------hHHHhhhhCCCCEE--EecCCCHHHHhhcCccccC
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLI-PFVALDVRS----------DRVAIGRALDLPVY--FGDAGSREVLHKVGAERAC 1075 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi-~VvVID~D~----------e~ve~l~~~g~~vi--~GDasd~e~Le~agI~~A~ 1075 (1173)
..+++|.|+|.+|+.+++.|.+.|. .|.+.|.|. +.++..++.+.... .+|..+.+.+.. . ++|
T Consensus 23 g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~--~-~~D 99 (217)
T cd05211 23 GLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILG--L-DVD 99 (217)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCccccee--c-ccc
Confidence 3589999999999999999999977 677789888 77766655432222 134444444443 3 689
Q ss_pred EEEEecCCCcchHHHHHHHHhhCCCceEEE-Eec---ChhhHHHHHHCCCCeeecCCcHH
Q 001051 1076 AAAITLDTPGANYRTVWALSKYFPNVKTFV-RAH---DIDHGLNLEKAGATAVVPETLEP 1131 (1173)
Q Consensus 1076 ~VVi~t~Dd~~Ni~iv~~ar~l~p~~~IIa-ra~---d~e~~~~L~~aGAd~VI~p~~~a 1131 (1173)
.++-+...+..|-. .++++. +++|+ .++ +++..+.|++-| .++.|+..+
T Consensus 100 VlipaA~~~~i~~~---~a~~l~--a~~V~e~AN~p~t~~a~~~L~~~G--i~v~Pd~~~ 152 (217)
T cd05211 100 IFAPCALGNVIDLE---NAKKLK--AKVVAEGANNPTTDEALRILHERG--IVVAPDIVA 152 (217)
T ss_pred EEeeccccCccChh---hHhhcC--ccEEEeCCCCCCCHHHHHHHHHCC--cEEEChHHh
Confidence 88877766544443 444443 45555 666 678999999999 567787665
No 73
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.36 E-value=0.047 Score=64.67 Aligned_cols=99 Identities=15% Similarity=0.045 Sum_probs=72.8
Q ss_pred ccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEec---CCCcc
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITL---DTPGA 1086 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t---~Dd~~ 1086 (1173)
..++|+|.|..|..+++.+...|.+|+++|+++++.+.+.......+..+..+++.+.+. +.++|.+|.++ +.+..
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~-l~~aDvVI~a~~~~g~~~p 246 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDA-VKRADLLIGAVLIPGAKAP 246 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHH-HccCCEEEEccccCCCCCC
Confidence 458999999999999999999999999999999988877654333444556667777665 67899999887 33334
Q ss_pred hHHHHHHHHhhCCCceEEEEecC
Q 001051 1087 NYRTVWALSKYFPNVKTFVRAHD 1109 (1173)
Q Consensus 1087 Ni~iv~~ar~l~p~~~IIara~d 1109 (1173)
++.....++.+.|+..++-.+.|
T Consensus 247 ~lit~~~l~~mk~g~vIvDva~d 269 (370)
T TIGR00518 247 KLVSNSLVAQMKPGAVIVDVAID 269 (370)
T ss_pred cCcCHHHHhcCCCCCEEEEEecC
Confidence 44456666666676555555544
No 74
>CHL00194 ycf39 Ycf39; Provisional
Probab=95.30 E-value=0.063 Score=61.65 Aligned_cols=70 Identities=14% Similarity=0.151 Sum_probs=58.5
Q ss_pred ccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecC
Q 001051 1012 IILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLD 1082 (1173)
Q Consensus 1012 vIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~ 1082 (1173)
++|.| .|.+|..+++.|.++|++|+++.++++....+...+..++.||.+|++.|.++ ++++|.|+-+..
T Consensus 3 IlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a-l~g~d~Vi~~~~ 73 (317)
T CHL00194 3 LLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPS-FKGVTAIIDAST 73 (317)
T ss_pred EEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHH-HCCCCEEEECCC
Confidence 56777 69999999999999999999999998776666667899999999999999775 346788877643
No 75
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=95.27 E-value=8.2 Score=45.13 Aligned_cols=137 Identities=15% Similarity=0.152 Sum_probs=77.2
Q ss_pred chHHHHHHHHHhhccccccc---cc--CchhHHHHHHHHHHHHHHHHhhcCChhHHHhchhhH---HHHHHHHHHHHHHH
Q 001051 627 SPVLGYLAAGILIGPYGLSI---IR--HVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYV---FGLGSAQVLVTAVV 698 (1173)
Q Consensus 627 P~IvG~LLaGILLGP~gLgl---i~--~~~~~~~LaeLGL~~LLF~aGLEldl~~Lrr~~k~i---l~La~~~vllt~~~ 698 (1173)
+.+...+++|+.+|-+..++ +. +....+.-..+++.+.|+=.=+++|++++++..+.. ...-....++.-+.
T Consensus 18 ~wv~l~i~~Gi~lG~~~p~~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~lsL~~Nwii~P~l 97 (342)
T COG0798 18 LWVFLAIAIGILLGVHFPGLAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILSLFVNWIIGPLL 97 (342)
T ss_pred HHHHHHHHHHHHHHhcccchhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 34556677888888554442 22 233456777888888888888999999999766542 22223333333333
Q ss_pred HHHHHHHHhCCChHHHHHHhhccccCcHHHHHHHH-HhcCCCCCchhHHHHHHHhhhhHHHHHHHHHHHHH
Q 001051 699 VGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVL-QERGESTSRHGRATFSVLLFQDLAVVVLLILIPLI 768 (1173)
Q Consensus 699 vgll~~~llGls~~~ALlLGaiLS~TSpaVVv~vL-~elg~l~s~~grl~Ls~sllnDi~aIvlf~ll~~l 768 (1173)
...+++++++.-+ .+..|.++..-.|-+.+-+. .++-..+ -..++..-.+||+..++++..+..+
T Consensus 98 m~~la~~fl~~~p--ey~~GlILlglApC~aMVivw~~La~Gd---~~~tlv~Va~n~l~qiv~y~~~~~~ 163 (342)
T COG0798 98 MFALAWFFLPDEP--EYRAGLILLGLAPCIAMVIVWSGLAKGD---RELTLVLVAFNSLLQIVLYAPLGKF 163 (342)
T ss_pred HHHHHHHHhCCCH--HHHHHHHHHHhhhhHHHHHHHHhhccCc---HhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444333 44555544444443333222 3332212 2445556678999999888655444
No 76
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=95.24 E-value=0.048 Score=56.90 Aligned_cols=90 Identities=19% Similarity=0.139 Sum_probs=70.1
Q ss_pred ccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcch---
Q 001051 1012 IILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN--- 1087 (1173)
Q Consensus 1012 vIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~N--- 1087 (1173)
|+|.| .|.+|+.+++.|.++|++|+++-+++++.+. ..+.+++.||..|++.+.++= .+++.|+.+.+....+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al-~~~d~vi~~~~~~~~~~~~ 77 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAAL-KGADAVIHAAGPPPKDVDA 77 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHH-TTSSEEEECCHSTTTHHHH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhh-hhcchhhhhhhhhcccccc
Confidence 46777 5999999999999999999999999998877 778999999999999888753 4899999999743322
Q ss_pred -HHHHHHHHhhCCCceEEE
Q 001051 1088 -YRTVWALSKYFPNVKTFV 1105 (1173)
Q Consensus 1088 -i~iv~~ar~l~p~~~IIa 1105 (1173)
..+...+++.+.. +++.
T Consensus 78 ~~~~~~a~~~~~~~-~~v~ 95 (183)
T PF13460_consen 78 AKNIIEAAKKAGVK-RVVY 95 (183)
T ss_dssp HHHHHHHHHHTTSS-EEEE
T ss_pred cccccccccccccc-ccee
Confidence 2344455555543 4444
No 77
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=95.22 E-value=0.17 Score=54.62 Aligned_cols=128 Identities=26% Similarity=0.392 Sum_probs=84.7
Q ss_pred HHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcCCh-----hHHHhchhhHHHHHHHHHHHHHHHHHHHHH
Q 001051 630 LGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSV-----ERLSSMKKYVFGLGSAQVLVTAVVVGLVAH 704 (1173)
Q Consensus 630 vG~LLaGILLGP~gLgli~~~~~~~~LaeLGL~~LLF~aGLEldl-----~~Lrr~~k~il~La~~~vllt~~~vgll~~ 704 (1173)
++.+++|+++|-..... ....+.+.+..+.+++|.+|+++-- +++++.+++.+.+.+...+.+. +.++++.
T Consensus 2 l~~li~Gi~lG~~~~~~---~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSl-lgg~l~~ 77 (191)
T PF03956_consen 2 LIALILGILLGYFLRPP---FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSL-LGGLLAS 77 (191)
T ss_pred eeeHHHHHHHHHHhccc---ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHH
Confidence 45678888888643322 2233788899999999999998843 4566667788877776665554 4666677
Q ss_pred HHhCCChHHHHHHhhccccCcHHHHHHHHHhcCCCCCchhHHHHHHHhhhhHHHHHHHHHH
Q 001051 705 FVSGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILI 765 (1173)
Q Consensus 705 ~llGls~~~ALlLGaiLS~TSpaVVv~vL~elg~l~s~~grl~Ls~sllnDi~aIvlf~ll 765 (1173)
+++++++..++.+|+-+.-=|..-++ +.+.. +...|.+++-.=++-++.++++.-++
T Consensus 78 ~ll~~~~~~~lav~sG~GwYSlsg~~--i~~~~--~~~~G~iafl~n~~RE~~a~~~~P~~ 134 (191)
T PF03956_consen 78 LLLGLSLKESLAVASGFGWYSLSGVL--ITQLY--GPELGTIAFLSNLFREILAIILIPLL 134 (191)
T ss_pred HHhcCCHHHHHHHHccCcHHHhHHHH--HHhhh--CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77799999999998876654443222 33321 33567776666666666666655444
No 78
>PRK03818 putative transporter; Validated
Probab=95.13 E-value=0.41 Score=59.73 Aligned_cols=127 Identities=20% Similarity=0.314 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-cCCCchHHHHHHHHHhhcccc--cccccCchhHHHHHHHHHHHHHHHHhhcCChhHH
Q 001051 601 ASLFDVLWLLLASVIFVPIFQK-IPGGSPVLGYLAAGILIGPYG--LSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERL 677 (1173)
Q Consensus 601 ~~Ll~l~lLLl~A~ilg~L~~R-l~~lP~IvG~LLaGILLGP~g--Lgli~~~~~~~~LaeLGL~~LLF~aGLEldl~~L 677 (1173)
++++.+++.+.+++++|.+--+ + ++- +.|-+++|+++|... +++.-+.....++.++|+.+++|.+|++.-..-+
T Consensus 6 ~~~~~l~l~i~lG~~lG~i~i~g~-~LG-~~g~L~~gl~~G~~~~~~~~~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~ 83 (552)
T PRK03818 6 LTVSILALVAVVGLWIGNIKIRGV-GLG-IGGVLFGGIIVGHFVSQFGLTLDSDMLHFIQEFGLILFVYTIGIQVGPGFF 83 (552)
T ss_pred HHHHHHHHHHHHHHhhcceEECCC-ccc-cHHHHHHHHHHhccccccCcccChHHHHHHHHHHHHHHHHHHhhcccHHHH
Confidence 4455555555555555542111 1 222 479999999999732 1221133445679999999999999999988766
Q ss_pred Hhchh---hHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHHHHH
Q 001051 678 SSMKK---YVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQ 731 (1173)
Q Consensus 678 rr~~k---~il~La~~~vllt~~~vgll~~~llGls~~~ALlLGaiLS~TSpaVVv~ 731 (1173)
...++ +...++++-++++. ++++++++++++++..+.-+ .+=+.|+|+..-.
T Consensus 84 ~~l~~~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~G~-~aGa~T~tp~l~a 138 (552)
T PRK03818 84 SSLRKSGLRLNLFAVLIVILGG-LVTAILHKLFGIPLPVMLGI-FSGAVTNTPALGA 138 (552)
T ss_pred HHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHhCCCHHHHHHH-hhccccccHHHHH
Confidence 65444 33444444444333 34666678889987633222 1223455554433
No 79
>COG2855 Predicted membrane protein [Function unknown]
Probab=95.11 E-value=0.2 Score=58.01 Aligned_cols=113 Identities=19% Similarity=0.195 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHhchhHHHHHHHHHHhhcccc-hhHHHHHhHhhHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHH
Q 001051 830 LVILGTSLLTARAGLSMALGAFLAGLLLAETE-FSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLL 908 (1173)
Q Consensus 830 al~lg~~~lae~lGLS~vLGAFvAGLiLsn~~-~~~~l~e~l~~~~~~LlpiFFv~iGm~Idl~~L~~~~~lilllvvll 908 (1173)
++.++-.......|+++.+=|.+.|+++++.. .+.+...-+.-....++.+=-++.|++++++.+.+.-.-.+.+.+..
T Consensus 23 a~~l~~~~~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~~G~~~v~~~~~~ 102 (334)
T COG2855 23 AMLLGAFFFSIHLGLSALTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIADVGGSGVLIIAIT 102 (334)
T ss_pred HHHHhchHHhhhcCchHHHHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHHcCccHHHHHHHH
Confidence 33334444556778889999999999999643 33344443444466777777788999999999876323344445555
Q ss_pred HHHHHHHHHHHHHhcCCChhhhhhhhhcccCCcc
Q 001051 909 IGGKTILVALVGRLFGVSVISAIRTGLLLAPGGE 942 (1173)
Q Consensus 909 vv~K~l~v~l~~~l~g~~~real~lGl~LaprGe 942 (1173)
+..-++..++..+++|++++.++.+|.+-+.=|.
T Consensus 103 l~~t~~~~~~lg~~lgld~~~a~Lia~GssICGa 136 (334)
T COG2855 103 LSSTFLFAYFLGKLLGLDKKLALLIAAGSSICGA 136 (334)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHccchhhHH
Confidence 6667777888888999999999999887554443
No 80
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=95.09 E-value=11 Score=45.50 Aligned_cols=317 Identities=15% Similarity=0.163 Sum_probs=157.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhh---cccc---cccccCc--hhH------HHHHHHHHHHHHHH
Q 001051 602 SLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILI---GPYG---LSIIRHV--HGT------KAIAEFGVVFLLFN 667 (1173)
Q Consensus 602 ~Ll~l~lLLl~A~ilg~L~~Rl~~lP~IvG~LLaGILL---GP~g---Lgli~~~--~~~------~~LaeLGL~~LLF~ 667 (1173)
.+-.++++.+++.+++++-+|+ |-+=-|+-.|.++ +|.. .|++++. +.. .-+.++.++.+.--
T Consensus 30 m~g~~a~~~v~G~~l~~IG~ri---Pi~k~yiGGg~il~~f~ps~Lv~~~~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~G 106 (414)
T PF03390_consen 30 MIGGFAVMMVLGFLLGEIGDRI---PILKDYIGGGAILCIFVPSALVYFGLIPESVVEAVTNFMKGSNFLYFFIAALIVG 106 (414)
T ss_pred hHHHHHHHHHHHHHHHHHHhhC---hhhhccCChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCChHHHHHHHHHHh
Confidence 3466777888899999888876 3332334444333 3332 2444431 111 13334444444333
Q ss_pred HhhcCChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhc-cccCcH---HHHHH-HHH-hcCCCCC
Q 001051 668 IGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNG-LALSST---AVVLQ-VLQ-ERGESTS 741 (1173)
Q Consensus 668 aGLEldl~~Lrr~~k~il~La~~~vllt~~~vgll~~~llGls~~~ALlLGai-LS~TSp---aVVv~-vL~-elg~l~s 741 (1173)
.=+.+|.+.|.+...+.+...+.+++..++ ++.+...++|.++..+++.-++ ...-.. ++-++ +-. -.+....
T Consensus 107 SILgm~RklLika~~r~~p~il~g~~~a~~-~g~lvG~l~G~~~~~~i~~i~lPIMgGG~GaGavPLS~~Ya~~~g~~~~ 185 (414)
T PF03390_consen 107 SILGMNRKLLIKAFARFIPPILGGVIGAFL-LGGLVGMLFGYSFKDAIFYIVLPIMGGGMGAGAVPLSQIYAEALGQDAE 185 (414)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCHHHHHHHHHhhhcCCCccccHhHHHHHHHHHhCCCHH
Confidence 346899999999888877777777666544 5555666789988766654221 111111 11111 111 1222222
Q ss_pred chhHHHHHHHhhhhHHHHHHHHHHHHHhcCC--CCCCCcH----------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 001051 742 RHGRATFSVLLFQDLAVVVLLILIPLISPNS--SKGGVGF----------------QAIAEALGVAAVKAAVAITAIIAG 803 (1173)
Q Consensus 742 ~~grl~Ls~sllnDi~aIvlf~ll~~la~~~--s~g~~~~----------------~~i~~~Lgl~ll~iil~ill~lli 803 (1173)
.+-..++...++.++++|+.-.++.-+.... -+|.... ..-...++ ..+.+.+
T Consensus 186 ~~~s~~ipa~~lgNi~AIi~aglL~~lg~~~P~ltGnG~L~~~~~~~~~~~~~~~~~~~~~~~g---------~Gllla~ 256 (414)
T PF03390_consen 186 EYFSQLIPALTLGNIFAIIFAGLLNKLGKKKPKLTGNGQLLKGGDDEEEEAKKKEKPIDFSDMG---------AGLLLAC 256 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCceEEeCCccccccccccCCCCCHHHHH---------HHHHHHH
Confidence 3334445667777888887776664442111 0000000 00000111 1111122
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhhcccchhHHHHHhHhhH----HHHHHH
Q 001051 804 GRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPY----RGLLLG 879 (1173)
Q Consensus 804 g~~llrpil~~l~~~~~~el~~l~vLal~lg~~~lae~lGLS~vLGAFvAGLiLsn~~~~~~l~e~l~~~----~~~Llp 879 (1173)
..|++..++..+.. -..+. ..+....+...+|+ ..+++++-...+ ..-+.+
T Consensus 257 ~~y~~G~ll~~~i~---ih~~a-----~mIi~~~i~K~~~l-----------------vP~~~e~~a~~~~~f~~~~lt~ 311 (414)
T PF03390_consen 257 SFYILGVLLSKLIG---IHAYA-----WMIILVAIVKAFGL-----------------VPESLEEGAKQWYKFFSKNLTW 311 (414)
T ss_pred HHHHHHHHHHHhcC---CcHHH-----HHHHHHHHHHHhCc-----------------CCHHHHHHHHHHHHHHHHHHHH
Confidence 22332222232221 11111 11111222333333 233444433333 334455
Q ss_pred HHHHHHhcc-cChhhhhhhhhh-HHHHHHHHHHHHHHHHHHHHHhcCCChhh-hhhhhhcccCCcchh-hHHHHHHHhhc
Q 001051 880 LFFMTVGMS-IDPKLLLSNFPV-ITGALGLLIGGKTILVALVGRLFGVSVIS-AIRTGLLLAPGGEFA-FVAFGEAVNQG 955 (1173)
Q Consensus 880 iFFv~iGm~-Idl~~L~~~~~l-illlvvllvv~K~l~v~l~~~l~g~~~re-al~lGl~LaprGeva-lvla~lAl~~g 955 (1173)
...+-+|+. +|+..+...+.. -+++++..+++-.++.++.+++.|+.+-| ++..|+.++.+|..+ +.+++.+-..+
T Consensus 312 ~lLvgiGv~~~~l~~l~~a~t~~~vv~~~~~Vl~~~~~a~~vG~l~g~YPvEsAItaGLC~an~GGtGDvAVLsAa~RM~ 391 (414)
T PF03390_consen 312 PLLVGIGVAYTDLNDLIAAFTPQYVVIVLATVLGAVIGAFLVGKLVGFYPVESAITAGLCMANMGGTGDVAVLSAANRME 391 (414)
T ss_pred HHHHHHHhhhCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhcccCCCCCCcchheehhhhcc
Confidence 566678887 888888775422 33445555677788899999999987666 556676777666554 44444444444
Q ss_pred c
Q 001051 956 I 956 (1173)
Q Consensus 956 i 956 (1173)
.
T Consensus 392 L 392 (414)
T PF03390_consen 392 L 392 (414)
T ss_pred c
Confidence 3
No 81
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=95.00 E-value=0.69 Score=55.43 Aligned_cols=117 Identities=17% Similarity=0.217 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCchhHHHHHH-HHHHHHHHHHhhcCChhHHHhchhhHH
Q 001051 607 LWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAE-FGVVFLLFNIGLELSVERLSSMKKYVF 685 (1173)
Q Consensus 607 ~lLLl~A~ilg~L~~Rl~~lP~IvG~LLaGILLGP~gLgli~~~~~~~~Lae-LGL~~LLF~aGLEldl~~Lrr~~k~il 685 (1173)
...+.+....+.+...+ |+++++|-.++|+++...-....+-.+.++.+.+ +.+++++...|+++|++.+...+..++
T Consensus 225 ~~~l~i~l~~a~l~e~~-gls~ilGAFlaGl~ls~~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~~~~~l 303 (397)
T COG0475 225 LFVLLLVLGAAYLAELL-GLSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLENLLLIL 303 (397)
T ss_pred HHHHHHHHHHHHHHHHh-ChhHHHHHHHHHHHhcccccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhccHHHHH
Confidence 33444455566777778 9999999999999999753321122456788888 999999999999999999988887644
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCc
Q 001051 686 GLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSS 725 (1173)
Q Consensus 686 ~La~~~vllt~~~vgll~~~llGls~~~ALlLGaiLS~TS 725 (1173)
.+..+.++ .-.+.+++..+.+|++...++.+|..+....
T Consensus 304 ~~~~~~i~-~K~~~~~~~~~~~g~~~~~~~~~g~~~~~~g 342 (397)
T COG0475 304 LLVALAIL-GKILGAYLAARLLGFSKRLALGIGLLLRQGG 342 (397)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHcCcHHHHHHHHhhhhhhh
Confidence 44443333 3344556666778888888888887766433
No 82
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=94.99 E-value=0.17 Score=63.20 Aligned_cols=130 Identities=16% Similarity=0.182 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-cCCCchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcCChhHHHh
Q 001051 601 ASLFDVLWLLLASVIFVPIFQK-IPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSS 679 (1173)
Q Consensus 601 ~~Ll~l~lLLl~A~ilg~L~~R-l~~lP~IvG~LLaGILLGP~gLgli~~~~~~~~LaeLGL~~LLF~aGLEldl~~Lrr 679 (1173)
++++.+++++.+++++|.+--+ + ++-.+.|-+++|+++|..+.. ..+.+.++|+++++|.+|++.-+.-++.
T Consensus 10 ~p~l~lfl~i~lG~~lG~iki~~~-~LG~~~gvLfvgl~~G~~g~~------i~~~v~~~gl~lFvy~vG~~~Gp~Ff~~ 82 (562)
T TIGR03802 10 NPEIALFLSLALGYLIGKIKFGSF-QLGGVAGSLIVAVLIGQLGIQ------IDPGVKAVFFALFIFAIGYEVGPQFFAS 82 (562)
T ss_pred CHHHHHHHHHHHhHhhcceEEeee-ecchHHHHHHHHHHHHhcCCC------CChHHHHHHHHHHHHHhhhccCHHHHHH
Confidence 4445555555555555544322 3 555678999999999986543 3345888999999999999999987776
Q ss_pred chhhHHHHHHHHHH--HHHHHHHHHHHHHhCCChHHH--HHHhhccccCcHHHHHHHHHhcC
Q 001051 680 MKKYVFGLGSAQVL--VTAVVVGLVAHFVSGLPGPAS--IVIGNGLALSSTAVVLQVLQERG 737 (1173)
Q Consensus 680 ~~k~il~La~~~vl--lt~~~vgll~~~llGls~~~A--LlLGaiLS~TSpaVVv~vL~elg 737 (1173)
.++..+.+.+..++ +..+++++++++++|++...+ ++-|+.-+..+.+.+...+...+
T Consensus 83 l~~~g~~~~~~a~~~~~~~~~~~~~~~~~~g~~~~~~~Gl~aGalT~tp~l~aA~~a~~~~~ 144 (562)
T TIGR03802 83 LKKDGLREIILALVFAVSGLITVYALAKIFGLDKGTAAGLAAGGLTQSAVIGTAGDAIEKLG 144 (562)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhchhhccHHHHHHHHHHHhcC
Confidence 66544433333322 223445666777889976543 33333222222234455555554
No 83
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=94.89 E-value=0.39 Score=50.15 Aligned_cols=105 Identities=17% Similarity=0.179 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHhcCCCc--hHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcCChhHHHhchhhHH
Q 001051 608 WLLLASVIFVPIFQKIPGGS--PVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVF 685 (1173)
Q Consensus 608 lLLl~A~ilg~L~~Rl~~lP--~IvG~LLaGILLGP~gLgli~~~~~~~~LaeLGL~~LLF~aGLEldl~~Lrr~~k~il 685 (1173)
+.++++.+.+.+++++ ++| .++|-++++.++.-.+. .+...+..+..++.+++-..+|..++...+++..+...
T Consensus 2 ~~~~~~~~~g~l~~~l-~~Pa~~llG~mi~~~~~~~~~~---~~~~~P~~~~~~~qviiG~~iG~~f~~~~l~~~~~~~~ 77 (156)
T TIGR03082 2 LLLLVGLAGGLLASLL-GLPAAWLLGPLLAGAVLSLAGG---LEITLPPWLLALAQVVIGILIGSRFTREVLAELKRLWP 77 (156)
T ss_pred HHHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHHhcCC---ccCCCCHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 3456678888899988 887 67788888877764321 13456788899999999999999999998887666443
Q ss_pred HH--HHHHHHHHHHHHHHHHHHHhCCChHHHHH
Q 001051 686 GL--GSAQVLVTAVVVGLVAHFVSGLPGPASIV 716 (1173)
Q Consensus 686 ~L--a~~~vllt~~~vgll~~~llGls~~~ALl 716 (1173)
.. ..+..++..++.+++.+.+.|+++.++++
T Consensus 78 ~~l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~L 110 (156)
T TIGR03082 78 AALLSTVLLLALSALLAWLLARLTGVDPLTAFL 110 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 22 22223333345666777788999988764
No 84
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.82 E-value=2.9 Score=54.48 Aligned_cols=53 Identities=17% Similarity=0.243 Sum_probs=39.8
Q ss_pred CCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHH
Q 001051 260 KSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVA 312 (1173)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~ 312 (1173)
+.|++.-++.|..+|++-...+..+.+...+|+.|..+.+||+.+...-.+-|
T Consensus 1590 ~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A 1642 (1758)
T KOG0994|consen 1590 DRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEA 1642 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 45677777778888888888888888888888888888888887765544433
No 85
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=94.78 E-value=0.44 Score=55.77 Aligned_cols=140 Identities=16% Similarity=0.114 Sum_probs=80.0
Q ss_pred hchhHHHHHHHHHHhhcccc---hhHHHHHhHhhHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHH-HH
Q 001051 842 AGLSMALGAFLAGLLLAETE---FSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTIL-VA 917 (1173)
Q Consensus 842 lGLS~vLGAFvAGLiLsn~~---~~~~l~e~l~~~~~~LlpiFFv~iGm~Idl~~L~~~~~lilllvvllvv~K~l~-v~ 917 (1173)
.++++.+=+.+.|++++|.- ..+....-++-....++-+=-++.|+++++..+...-+..+.+.++.+..-++. .+
T Consensus 29 ~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~i~~~G~~~l~~~~~~v~~~~~~~~~ 108 (335)
T TIGR00698 29 PALSALFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPYIADVGPNEIVADTLILTSTFFLTVF 108 (335)
T ss_pred CCCcHHHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHHHCccccHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999942 222222222222345555566789999999988763322333333333333343 44
Q ss_pred HHHHhcCCChhhhhhhhhcccCCcchhhHHHHHHHhhccchhhhH---HHHHHHHHHHHHHHHHHHhhh
Q 001051 918 LVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLS---SLLFLLVGISMALTPWLAAGG 983 (1173)
Q Consensus 918 l~~~l~g~~~real~lGl~LaprGevalvla~lAl~~giis~el~---silvlvVvlS~iItPiL~~~~ 983 (1173)
+..+++|++++.+..++.+.+.=|.-+++...-..+. -+++.- ..+++.-.+.+++-|++.++.
T Consensus 109 ~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i~A--~~~~~a~ava~V~lfgt~am~l~P~l~~~l 175 (335)
T TIGR00698 109 LGSSRLKLDKQMSILLGAGSSICGAAAVAAIEPVIKA--EKEKVSVAIAIVVIFGTTGIFLYPSIYHYA 175 (335)
T ss_pred HHHHHhCCChhHHHHHHcchhHHHHHHHHHhccccCC--CccceeeeehHHHHHHHHHHHHHHHHHHHH
Confidence 5557899999999998887555554333332212221 122222 222233345667788887543
No 86
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=94.67 E-value=0.034 Score=56.69 Aligned_cols=106 Identities=14% Similarity=0.115 Sum_probs=75.9
Q ss_pred ccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHH-----Hh--hcCccccCEEEEecCCC
Q 001051 1012 IILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREV-----LH--KVGAERACAAAITLDTP 1084 (1173)
Q Consensus 1012 vIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~-----Le--~agI~~A~~VVi~t~Dd 1084 (1173)
++|+|.|.+|..++..|.+.|++|.++.+.+ +.+..++.|+.+...+ .+... .. ....+.+|.|++++...
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~ 78 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPD-GDETVQPPIVISAPSADAGPYDLVIVAVKAY 78 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETT-EEEEEEEEEEESSHGHHHSTESEEEE-SSGG
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecc-cceecccccccCcchhccCCCcEEEEEeccc
Confidence 4789999999999999999999999999999 8888888787666555 11100 00 34567899999999776
Q ss_pred cchHHHHHHHHhhCCCceEEEEecChhhHHHHHHC
Q 001051 1085 GANYRTVWALSKYFPNVKTFVRAHDIDHGLNLEKA 1119 (1173)
Q Consensus 1085 ~~Ni~iv~~ar~l~p~~~IIara~d~e~~~~L~~a 1119 (1173)
...-.+....+...++..|+...+.-...+.+.+.
T Consensus 79 ~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~ 113 (151)
T PF02558_consen 79 QLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEY 113 (151)
T ss_dssp GHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCH
T ss_pred chHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHH
Confidence 55554444444445666677777777777777654
No 87
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=94.66 E-value=0.18 Score=55.68 Aligned_cols=84 Identities=11% Similarity=0.061 Sum_probs=64.4
Q ss_pred cccccccCCCccHHHHHHHHHhCCCCeEEecCCc-hHHHhhhh-CCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcc
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRS-DRVAIGRA-LDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~-e~ve~l~~-~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~ 1086 (1173)
..+++|+|+|+++..=++.|.+.|..|+||-++- +.++.+.. ..+..+..+.... .+..+..|+++|+|++.
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~------dl~g~~LViaATdD~~v 98 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKE------FIKDKHLIVIATDDEKL 98 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChH------HhCCCcEEEECCCCHHH
Confidence 4589999999999999999999999999997763 23433433 3455555544322 34679999999999999
Q ss_pred hHHHHHHHHhhC
Q 001051 1087 NYRTVWALSKYF 1098 (1173)
Q Consensus 1087 Ni~iv~~ar~l~ 1098 (1173)
|-.+...+++..
T Consensus 99 N~~I~~~a~~~~ 110 (223)
T PRK05562 99 NNKIRKHCDRLY 110 (223)
T ss_pred HHHHHHHHHHcC
Confidence 999999998764
No 88
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=94.65 E-value=0.13 Score=56.23 Aligned_cols=88 Identities=18% Similarity=0.060 Sum_probs=68.2
Q ss_pred ccccC-CCccHHHHHHHHHhCCCCeEEecCCch--HHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecC---CCc
Q 001051 1012 IILCG-FGRVGQIIAQLLSERLIPFVALDVRSD--RVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLD---TPG 1085 (1173)
Q Consensus 1012 vIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e--~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~---Dd~ 1085 (1173)
++|+| .|.+|+.+++.|.+.+++|.++-+++. ..+.+++.|..++.+|..|++.|.++ +++++.|+++++ +.+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~a-l~g~d~v~~~~~~~~~~~ 79 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAA-LKGVDAVFSVTPPSHPSE 79 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHH-HTTCSEEEEESSCSCCCH
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHH-HcCCceEEeecCcchhhh
Confidence 34566 599999999999999999999999964 56788899999999999999999875 568999999998 332
Q ss_pred c--hHHHHHHHHhhCCC
Q 001051 1086 A--NYRTVWALSKYFPN 1100 (1173)
Q Consensus 1086 ~--Ni~iv~~ar~l~p~ 1100 (1173)
. -..++.++++.+.+
T Consensus 80 ~~~~~~li~Aa~~agVk 96 (233)
T PF05368_consen 80 LEQQKNLIDAAKAAGVK 96 (233)
T ss_dssp HHHHHHHHHHHHHHT-S
T ss_pred hhhhhhHHHhhhccccc
Confidence 2 23456677777643
No 89
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=94.60 E-value=0.16 Score=60.24 Aligned_cols=119 Identities=18% Similarity=0.104 Sum_probs=91.7
Q ss_pred ccccccCCCccHHHHHHHHHhCC-CCeEEecCCchHHHhhhhC---CCCEEEecCCCHHHHhhcCccccCEEEEecCCCc
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERL-IPFVALDVRSDRVAIGRAL---DLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~g-i~VvVID~D~e~ve~l~~~---g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~ 1085 (1173)
..++|+|.|.+|+.+++.|...+ .+|++.|++.+.++++.+. ...+..=|+.+.+.|.++= .+.++||.+.+-.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li-~~~d~VIn~~p~~- 79 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALI-KDFDLVINAAPPF- 79 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHH-hcCCEEEEeCCch-
Confidence 36899999999999999998888 8999999999999988766 4889999999999998874 4559988888765
Q ss_pred chHHHHHHHHhhCCCceEEEEecChh----hHHHHHHCCCCeeecCCcHHH
Q 001051 1086 ANYRTVWALSKYFPNVKTFVRAHDID----HGLNLEKAGATAVVPETLEPS 1132 (1173)
Q Consensus 1086 ~Ni~iv~~ar~l~p~~~IIara~d~e----~~~~L~~aGAd~VI~p~~~aa 1132 (1173)
.+..+..++-+...+ .+-.+++++ ..+..+++|+..|..--+.+|
T Consensus 80 ~~~~i~ka~i~~gv~--yvDts~~~~~~~~~~~~a~~Agit~v~~~G~dPG 128 (389)
T COG1748 80 VDLTILKACIKTGVD--YVDTSYYEEPPWKLDEEAKKAGITAVLGCGFDPG 128 (389)
T ss_pred hhHHHHHHHHHhCCC--EEEcccCCchhhhhhHHHHHcCeEEEcccCcCcc
Confidence 555666555555543 344444433 567778999998886655554
No 90
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.46 E-value=0.19 Score=57.13 Aligned_cols=106 Identities=13% Similarity=-0.015 Sum_probs=71.1
Q ss_pred cccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCC------HHHHhhcCccccCEEEEecCCC
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGS------REVLHKVGAERACAAAITLDTP 1084 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd------~e~Le~agI~~A~~VVi~t~Dd 1084 (1173)
++.|+|.|.+|..++..|.+.|++|+++++ +++.+.+++.|..+...+... ......+ .+.+|.+++++...
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~vilavk~~ 79 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEEL-TGPFDLVILAVKAY 79 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHc-cCCCCEEEEEeccc
Confidence 478999999999999999999999999999 888888887776544332110 0011121 36899999999887
Q ss_pred cchHHHHHHHHhhCCCceEEEEecChhhHHHHHH
Q 001051 1085 GANYRTVWALSKYFPNVKTFVRAHDIDHGLNLEK 1118 (1173)
Q Consensus 1085 ~~Ni~iv~~ar~l~p~~~IIara~d~e~~~~L~~ 1118 (1173)
...-.+........++..++...+.-...+.+++
T Consensus 80 ~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~ 113 (305)
T PRK12921 80 QLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEP 113 (305)
T ss_pred CHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHH
Confidence 5544444333334555555556666555555554
No 91
>PRK05326 potassium/proton antiporter; Reviewed
Probab=94.39 E-value=0.69 Score=57.82 Aligned_cols=113 Identities=15% Similarity=0.123 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHhchhHHHHHHHHHHhhcccchhH---HHHHhHhhHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHH
Q 001051 829 LLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSL---QVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGAL 905 (1173)
Q Consensus 829 Lal~lg~~~lae~lGLS~vLGAFvAGLiLsn~~~~~---~l~e~l~~~~~~LlpiFFv~iGm~Idl~~L~~~~~lilllv 905 (1173)
+++...+..++..+|++.+++-+++|++++...... .-.+..+.+..+.++++....|+++|+..+...+..++.+.
T Consensus 15 l~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~~~~~~~la 94 (562)
T PRK05326 15 LLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRPALGPALSLA 94 (562)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHH
Confidence 444555567778899999999999999998643221 11123445677888888889999999999887665544333
Q ss_pred HHHHHHHH-HHHHHHHHhcCCChhhhhhhhhcccCCc
Q 001051 906 GLLIGGKT-ILVALVGRLFGVSVISAIRTGLLLAPGG 941 (1173)
Q Consensus 906 vllvv~K~-l~v~l~~~l~g~~~real~lGl~LaprG 941 (1173)
.+.++.-. +..+...++++++|.+++.+|..+++-.
T Consensus 95 ~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td 131 (562)
T PRK05326 95 TLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTD 131 (562)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCc
Confidence 33322222 3344555677999999998888765544
No 92
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=94.38 E-value=0.47 Score=58.86 Aligned_cols=117 Identities=22% Similarity=0.248 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHhchhHHHHHHHHHHhhcccchhHHHHHhHhhHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHH
Q 001051 829 LLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLL 908 (1173)
Q Consensus 829 Lal~lg~~~lae~lGLS~vLGAFvAGLiLsn~~~~~~l~e~l~~~~~~LlpiFFv~iGm~Idl~~L~~~~~lilllvvll 908 (1173)
++.+.+...+++.+++++.++-+++|++++..+....+.-.-+.+..+++|+.....|+++|...+..++..++.+.+..
T Consensus 7 ~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~la~~~ 86 (525)
T TIGR00831 7 VMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDREIVLFLFLPPLLFEAAMNTDLRELRENFRPIALIAFLL 86 (525)
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 44455556778888999999999999998854321111100112345778888889999999999988775544443333
Q ss_pred HHHHH-HHHHHHHHhcCCChhhhhhhhhcccCCcchhh
Q 001051 909 IGGKT-ILVALVGRLFGVSVISAIRTGLLLAPGGEFAF 945 (1173)
Q Consensus 909 vv~K~-l~v~l~~~l~g~~~real~lGl~LaprGeval 945 (1173)
++.-. +..+...+..+++|..++.+|..++|-..+..
T Consensus 87 vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav 124 (525)
T TIGR00831 87 VVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAV 124 (525)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHH
Confidence 33333 33334444678999999999998887776543
No 93
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=94.34 E-value=1.6 Score=52.31 Aligned_cols=157 Identities=16% Similarity=0.137 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHHHh--cCCCchHHHHHHHHHhhcccc--ccccc-CchhHHHHHHHHHHHHHHHHhhcCChhHHHhc
Q 001051 606 VLWLLLASVIFVPIFQK--IPGGSPVLGYLAAGILIGPYG--LSIIR-HVHGTKAIAEFGVVFLLFNIGLELSVERLSSM 680 (1173)
Q Consensus 606 l~lLLl~A~ilg~L~~R--l~~lP~IvG~LLaGILLGP~g--Lgli~-~~~~~~~LaeLGL~~LLF~aGLEldl~~Lrr~ 680 (1173)
+.+.+.+++.+...+++ + .+|..++-+++|+++.+.. .+..+ .....+.+.++.+-+++-.+=..+++..+...
T Consensus 224 i~iai~iG~~i~~~l~~~~~-~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~~ 302 (398)
T TIGR00210 224 IAVCLLVGYELNDLVAKTAL-MLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELADL 302 (398)
T ss_pred HHHHHHHHHHHHHHHHHcCC-CCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 33333445555444443 4 6899999999999998742 11111 12367899999999999988899999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHH----HHhhccccCcHHHH-HHHH-HhcCCCCCchhHHHHHHHhhh
Q 001051 681 KKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASI----VIGNGLALSSTAVV-LQVL-QERGESTSRHGRATFSVLLFQ 754 (1173)
Q Consensus 681 ~k~il~La~~~vllt~~~vgll~~~llGls~~~AL----lLGaiLS~TSpaVV-v~vL-~elg~l~s~~grl~Ls~slln 754 (1173)
.-+.+.+.+.+++.+.+...++.+.++|-+...+. ..|..+.+|.++++ ++.+ ++.|..++..=-+=+-.+.+-
T Consensus 303 a~Plliil~~q~i~~~l~~~fv~fr~mg~~ydaaV~~ag~~G~~lGatptaianm~av~~~yg~s~~af~ivPlvgaf~i 382 (398)
T TIGR00210 303 AGPIALILLVQVMFMALYAIFVTFRLMGKDYDAAVLCAGHCGFGLGATPTAIANMQAVTERFGPSHQAFIVVPLVGAFFI 382 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhccchHHHHHHhcccccccccchHHHHHHHHHHHhccCCCCcceehhhhHHHHHH
Confidence 99999999999999887777777777887754444 56777777877753 3333 555554433322223446667
Q ss_pred hHHHHHHHH
Q 001051 755 DLAVVVLLI 763 (1173)
Q Consensus 755 Di~aIvlf~ 763 (1173)
|++-.++..
T Consensus 383 d~~n~~~i~ 391 (398)
T TIGR00210 383 DIINALVIK 391 (398)
T ss_pred HHhhHHHHH
Confidence 766554443
No 94
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=94.34 E-value=0.23 Score=56.95 Aligned_cols=108 Identities=19% Similarity=0.239 Sum_probs=71.5
Q ss_pred ccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchHHHH
Q 001051 1012 IILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTV 1091 (1173)
Q Consensus 1012 vIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni~iv 1091 (1173)
+.++|.|.+|..+++.|.+.|+++++.|+++++.+.+.+.|.... .+..+..+++ +.++.|+++++++.....+.
T Consensus 3 Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~---~s~~~~~~~~--~~advVi~~vp~~~~~~~v~ 77 (299)
T PRK12490 3 LGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITAR---HSLEELVSKL--EAPRTIWVMVPAGEVTESVI 77 (299)
T ss_pred EEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeec---CCHHHHHHhC--CCCCEEEEEecCchHHHHHH
Confidence 678999999999999999999999999999999988877764321 1222333433 24789999999885443333
Q ss_pred HHHHh-hCCCceEEEEecC--h----hhHHHHHHCCCCeee
Q 001051 1092 WALSK-YFPNVKTFVRAHD--I----DHGLNLEKAGATAVV 1125 (1173)
Q Consensus 1092 ~~ar~-l~p~~~IIara~d--~----e~~~~L~~aGAd~VI 1125 (1173)
..+.. +.++ .+++...+ + +..+.+.+.|+..+=
T Consensus 78 ~~i~~~l~~g-~ivid~st~~~~~~~~~~~~~~~~g~~~vd 117 (299)
T PRK12490 78 KDLYPLLSPG-DIVVDGGNSRYKDDLRRAEELAERGIHYVD 117 (299)
T ss_pred HHHhccCCCC-CEEEECCCCCchhHHHHHHHHHHcCCeEEe
Confidence 33333 2343 45554432 2 334455667876543
No 95
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=94.32 E-value=0.66 Score=59.51 Aligned_cols=110 Identities=16% Similarity=0.196 Sum_probs=66.3
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHhhcccchh--H--HH---HHhHhhHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHH
Q 001051 833 LGTSLLTARAGLSMALGAFLAGLLLAETEFS--L--QV---ESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGAL 905 (1173)
Q Consensus 833 lg~~~lae~lGLS~vLGAFvAGLiLsn~~~~--~--~l---~e~l~~~~~~LlpiFFv~iGm~Idl~~L~~~~~lilllv 905 (1173)
++..++.+.+.++..+-.+++|++++..... . .. ......+..+.+++.-+..|+.++...+...|..++.++
T Consensus 27 l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl 106 (810)
T TIGR00844 27 LVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKYMLKHWVSVTMLL 106 (810)
T ss_pred HHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHH
Confidence 3334444455555555555555555432110 0 00 111112556777777788999999999988887665554
Q ss_pred HHHHHHHHHHHHHHHH-h-cCCChhhhhhhhhcccCCcc
Q 001051 906 GLLIGGKTILVALVGR-L-FGVSVISAIRTGLLLAPGGE 942 (1173)
Q Consensus 906 vllvv~K~l~v~l~~~-l-~g~~~real~lGl~LaprGe 942 (1173)
+..+..-++++.++.+ + .|++|..++.+|-.++|-.-
T Consensus 107 ~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDP 145 (810)
T TIGR00844 107 VPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDP 145 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcH
Confidence 4444444444444444 4 49999999999998887654
No 96
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=94.25 E-value=0.24 Score=56.86 Aligned_cols=110 Identities=15% Similarity=0.072 Sum_probs=73.6
Q ss_pred cccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchHHH
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRT 1090 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni~i 1090 (1173)
++-++|.|.+|..+++.|.+.|++|++.|+++++++.+.+.|.... .+.+.+.+ ...++|.|+++++++ ..-.+
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~----~s~~~~~~-~~~~~dvIi~~vp~~-~~~~v 75 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGV----ANLRELSQ-RLSAPRVVWVMVPHG-IVDAV 75 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCccc----CCHHHHHh-hcCCCCEEEEEcCch-HHHHH
Confidence 3678999999999999999999999999999999999987764332 23333322 235789999999987 33333
Q ss_pred HHHHHh-hCCCceEEEEecCh------hhHHHHHHCCCCeeecC
Q 001051 1091 VWALSK-YFPNVKTFVRAHDI------DHGLNLEKAGATAVVPE 1127 (1173)
Q Consensus 1091 v~~ar~-l~p~~~IIara~d~------e~~~~L~~aGAd~VI~p 1127 (1173)
...+.. +.++ .+++-..+. +..+.+++.|+..+=-|
T Consensus 76 ~~~l~~~l~~g-~ivid~st~~~~~t~~~~~~~~~~g~~~vda~ 118 (298)
T TIGR00872 76 LEELAPTLEKG-DIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCG 118 (298)
T ss_pred HHHHHhhCCCC-CEEEECCCCCcccHHHHHHHHHhcCCeEEecC
Confidence 333333 3344 455554332 23335566777655444
No 97
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=94.14 E-value=4.4 Score=50.46 Aligned_cols=90 Identities=18% Similarity=0.195 Sum_probs=50.4
Q ss_pred cchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 001051 264 KEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEA 343 (1173)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~a~~~~~~~m~~ae~av~~e~e~ 343 (1173)
++++++=-.-||-|+..|+-+..-+.++.++|...++||.... |++|-.|.++-+..-+|... -+.|=+.|=+-
T Consensus 512 ~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~-----a~qat~d~a~~Dlqk~nrlk-Qdear~~~~~l 585 (961)
T KOG4673|consen 512 RDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQAL-----AEQATNDEARSDLQKENRLK-QDEARERESML 585 (961)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-----HHHHhhhhhhhhHHHHhhhh-hhHHHHHHHHH
Confidence 3455555566777888888888888888888888888776543 33333333333333333322 22333444444
Q ss_pred hhhcccHHHHHHHHHH
Q 001051 344 TQRVNDAEIALQRAEK 359 (1173)
Q Consensus 344 ~~~~~~~~~~~~~~~~ 359 (1173)
.|.|.|-..+|+|+|.
T Consensus 586 vqqv~dLR~~L~~~Eq 601 (961)
T KOG4673|consen 586 VQQVEDLRQTLSKKEQ 601 (961)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555554
No 98
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=94.12 E-value=0.32 Score=55.89 Aligned_cols=111 Identities=15% Similarity=0.099 Sum_probs=73.5
Q ss_pred cccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchHHH
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRT 1090 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni~i 1090 (1173)
++-++|.|.+|..+++.|.+.|+++++.|+++++++.+.+.|..+. .+-.+..+.+ .+++.|+++++++.....+
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~---~~~~e~~~~~--~~~dvvi~~v~~~~~~~~v 76 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGA---DSLEELVAKL--PAPRVVWLMVPAGEITDAT 76 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeec---CCHHHHHhhc--CCCCEEEEEecCCcHHHHH
Confidence 3678999999999999999999999999999999998887775432 1222333332 2578999999887443333
Q ss_pred HHHHHh-hCCCceEEEEec--Ch----hhHHHHHHCCCCeeecC
Q 001051 1091 VWALSK-YFPNVKTFVRAH--DI----DHGLNLEKAGATAVVPE 1127 (1173)
Q Consensus 1091 v~~ar~-l~p~~~IIara~--d~----e~~~~L~~aGAd~VI~p 1127 (1173)
...+.. +.++ .+++-.. ++ +..+.+++.|+..+--|
T Consensus 77 ~~~l~~~l~~g-~ivid~st~~~~~~~~~~~~~~~~g~~~~dap 119 (301)
T PRK09599 77 IDELAPLLSPG-DIVIDGGNSYYKDDIRRAELLAEKGIHFVDVG 119 (301)
T ss_pred HHHHHhhCCCC-CEEEeCCCCChhHHHHHHHHHHHcCCEEEeCC
Confidence 333333 3344 3444432 22 23466677898876544
No 99
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=94.01 E-value=0.17 Score=51.66 Aligned_cols=108 Identities=12% Similarity=-0.060 Sum_probs=68.6
Q ss_pred cccccccCCCccHHHHHHHHHhCC-CCeEEecCCchHHHhhhhC-CCCEEEecCCCHHHHhhcCccccCEEEEecCCCcc
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERL-IPFVALDVRSDRVAIGRAL-DLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~g-i~VvVID~D~e~ve~l~~~-g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~ 1086 (1173)
..+++++|.|..|..+++.|.+.| ..++++|+++++.+.+.+. +...+..+..+.+. + ++++|.||.+++.+..
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~Dvvi~~~~~~~~ 94 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEE---L-LAEADLIINTTPVGMK 94 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhh---c-cccCCEEEeCcCCCCC
Confidence 356889999999999999999985 7899999999887765432 32111122333322 2 6789999999988764
Q ss_pred ---hHHHHHHHHhhCCCceEEEEecCh---hhHHHHHHCCCC
Q 001051 1087 ---NYRTVWALSKYFPNVKTFVRAHDI---DHGLNLEKAGAT 1122 (1173)
Q Consensus 1087 ---Ni~iv~~ar~l~p~~~IIara~d~---e~~~~L~~aGAd 1122 (1173)
+.... .....+...++-....+ +..+.+++.|+.
T Consensus 95 ~~~~~~~~--~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g~~ 134 (155)
T cd01065 95 PGDELPLP--PSLLKPGGVVYDVVYNPLETPLLKEARALGAK 134 (155)
T ss_pred CCCCCCCC--HHHcCCCCEEEEcCcCCCCCHHHHHHHHCCCc
Confidence 22111 11233443343333333 356677888874
No 100
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=93.96 E-value=0.22 Score=55.85 Aligned_cols=125 Identities=14% Similarity=0.105 Sum_probs=80.9
Q ss_pred cccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchH
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni 1088 (1173)
+.+++|+|.|..++.+++.+...|++|+++|.+++........+...+..+. ..+.+.. +..-+++|++|.|.....
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~t~vvi~th~h~~D~ 176 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPEDLPDGVATLVTDE-PEAEVAE--APPGSYFLVLTHDHALDL 176 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccccccCCCCceEEecCC-HHHHHhc--CCCCcEEEEEeCChHHHH
Confidence 5689999999999999999999999999999998854332222333233222 2344443 446788999999877666
Q ss_pred HHHHHHHhhCCCceEEEEecChh---hHHHHHHCCCCeeecCCcHHHHHHHHHHHHhcCCC
Q 001051 1089 RTVWALSKYFPNVKTFVRAHDID---HGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLP 1146 (1173)
Q Consensus 1089 ~iv~~ar~l~p~~~IIara~d~e---~~~~L~~aGAd~VI~p~~~aa~~LA~~vl~~l~~~ 1146 (1173)
.+...+-+..|-.+|=+.-.... ..+.|++.|.+. ....++..++|++
T Consensus 177 ~~L~~aL~~~~~~YIG~lGSr~k~~~~~~~L~~~G~~~----------~~l~ri~~PiGL~ 227 (246)
T TIGR02964 177 ELCHAALRRGDFAYFGLIGSKTKRARFEHRLRARGVDP----------AQIARMTCPIGLP 227 (246)
T ss_pred HHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCCH----------HHHhhEeCCCCCC
Confidence 66666643333336655555433 344556667531 2345666777774
No 101
>PRK04972 putative transporter; Provisional
Probab=93.88 E-value=0.69 Score=57.81 Aligned_cols=106 Identities=15% Similarity=0.140 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcCChhHHHhch
Q 001051 602 SLFDVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMK 681 (1173)
Q Consensus 602 ~Ll~l~lLLl~A~ilg~L~~Rl~~lP~IvG~LLaGILLGP~gLgli~~~~~~~~LaeLGL~~LLF~aGLEldl~~Lrr~~ 681 (1173)
+++.+++.+.+++++|.+--+-.++-...|-+++|+++|..+.. ....+.++|+.+++|.+|++.-..-+...+
T Consensus 13 ~~~~lf~~i~lG~~lG~i~~~~~~LG~~~g~L~vgl~~g~~~~~------~~~~~~~~gl~lF~~~vG~~~Gp~F~~~l~ 86 (558)
T PRK04972 13 YILLLFVVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHFS------INTDALNLGFMLFIFCVGVEAGPNFFSIFF 86 (558)
T ss_pred ChHHHHHHHHHHHhhhceEEeeEecCcchHHHHHHHHHHhCCCC------CChHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 34555555555555554332211444556999999999986543 234457899999999999999877665444
Q ss_pred h---hHHHHHHHHHHHHHHHHHHHHHHHhCCChHHH
Q 001051 682 K---YVFGLGSAQVLVTAVVVGLVAHFVSGLPGPAS 714 (1173)
Q Consensus 682 k---~il~La~~~vllt~~~vgll~~~llGls~~~A 714 (1173)
+ +...++++-++++. ++++++.+++|+++..+
T Consensus 87 ~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 121 (558)
T PRK04972 87 RDGKNYLMLALVMVGSAL-VIALGLGKLFGWDIGLT 121 (558)
T ss_pred HhhHHHHHHHHHHHHHHH-HHHHHHHHHhCCCHHHH
Confidence 4 44444444444433 34555666788887643
No 102
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=93.58 E-value=0.21 Score=58.48 Aligned_cols=88 Identities=17% Similarity=0.152 Sum_probs=66.2
Q ss_pred cccccccCCCccHHHHHHHHHhCCC-CeEEecCCc---------------------hHH----HhhhhC----CCCEEEe
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLI-PFVALDVRS---------------------DRV----AIGRAL----DLPVYFG 1058 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi-~VvVID~D~---------------------e~v----e~l~~~----g~~vi~G 1058 (1173)
..+|+|+|.|.+|..+++.|...|+ .+++||.|. .++ +++++. .+..+..
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~~ 103 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVVT 103 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEec
Confidence 4579999999999999999999998 899999995 112 222222 2345566
Q ss_pred cCCCHHHHhhcCccccCEEEEecCCCcchHHHHHHHHhhC
Q 001051 1059 DAGSREVLHKVGAERACAAAITLDTPGANYRTVWALSKYF 1098 (1173)
Q Consensus 1059 Dasd~e~Le~agI~~A~~VVi~t~Dd~~Ni~iv~~ar~l~ 1098 (1173)
|.+. +.++++ +.++|.||.++++.+.+..+...+++.+
T Consensus 104 ~~~~-~~~~~~-~~~~DlVid~~D~~~~r~~in~~~~~~~ 141 (338)
T PRK12475 104 DVTV-EELEEL-VKEVDLIIDATDNFDTRLLINDLSQKYN 141 (338)
T ss_pred cCCH-HHHHHH-hcCCCEEEEcCCCHHHHHHHHHHHHHcC
Confidence 7653 445544 6789999999999988888888888765
No 103
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=93.58 E-value=2.5 Score=49.27 Aligned_cols=111 Identities=13% Similarity=0.140 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCc--hHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcCChhHHHh
Q 001051 602 SLFDVLWLLLASVIFVPIFQKIPGGS--PVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSS 679 (1173)
Q Consensus 602 ~Ll~l~lLLl~A~ilg~L~~Rl~~lP--~IvG~LLaGILLGP~gLgli~~~~~~~~LaeLGL~~LLF~aGLEldl~~Lrr 679 (1173)
.+..+.+++.++.+.+.+++|+ |+| .++|-++++.++...+. .+...+..+..++.+++-..+|..++...++.
T Consensus 153 ~~~~l~~l~~~~~~g~~l~~~l-~iPa~~llGpml~~a~~~~~~~---~~~~~P~~l~~~aqv~iG~~iG~~f~~~~l~~ 228 (318)
T PF05145_consen 153 SWLWLALLALAALAGGLLARRL-RIPAPWLLGPMLVSAILNLFGG---PSFSLPPWLVNAAQVLIGASIGSRFTRETLRE 228 (318)
T ss_pred CHHHHHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHhC---CCCCCCHHHHHHHHHHHHHHHHccccHHHHHH
Confidence 4456777777888999999998 777 45677777777765422 12345577888888899999999999999887
Q ss_pred chhhHHHH--HHHHHHHHHHHHHHHHHHHhCCChHHHHH
Q 001051 680 MKKYVFGL--GSAQVLVTAVVVGLVAHFVSGLPGPASIV 716 (1173)
Q Consensus 680 ~~k~il~L--a~~~vllt~~~vgll~~~llGls~~~ALl 716 (1173)
..+..... .++..++..++.+++++++.|+++..+++
T Consensus 229 ~~~~~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~L 267 (318)
T PF05145_consen 229 LRRLLPPALLSTLLLLALCALFAWLLSRLTGIDFLTALL 267 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 77644332 22333334455677777888998887665
No 104
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=93.45 E-value=3.1 Score=43.52 Aligned_cols=117 Identities=26% Similarity=0.350 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHhchh--HHHHHHHHHHhhcccc-hhHHHHHhHhhHHHHHHHHHHHHHhcccChhhhhh---hhhhHHH
Q 001051 830 LVILGTSLLTARAGLS--MALGAFLAGLLLAETE-FSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLS---NFPVITG 903 (1173)
Q Consensus 830 al~lg~~~lae~lGLS--~vLGAFvAGLiLsn~~-~~~~l~e~l~~~~~~LlpiFFv~iGm~Idl~~L~~---~~~lill 903 (1173)
.++....++...+|++ .++|+++++.++.-.. ....+.. .+..+-..+.=+.+|.++++..+.. .++..+.
T Consensus 5 ~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~P~---~~~~~~qviiG~~iG~~f~~~~l~~~~~~~~~~l~ 81 (156)
T TIGR03082 5 LVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLPP---WLLALAQVVIGILIGSRFTREVLAELKRLWPAALL 81 (156)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCCCH---HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 4444455566777775 7788888888776332 1111111 2334444455567899998876654 3343445
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhhcccCCcchhhHHHHHHH
Q 001051 904 ALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAV 952 (1173)
Q Consensus 904 lvvllvv~K~l~v~l~~~l~g~~~real~lGl~LaprGevalvla~lAl 952 (1173)
.+++.++.-.+..++..+..++++.++++ ...|.|.-++.+.....
T Consensus 82 ~~~~~l~~~~~~~~~l~~~~~~~~~ta~L---a~~PGGl~~m~~~A~~~ 127 (156)
T TIGR03082 82 STVLLLALSALLAWLLARLTGVDPLTAFL---ATSPGGASEMAALAAEL 127 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHH---HhCCchHHHHHHHHHHh
Confidence 55555666777788888999999888763 35788887777655433
No 105
>PLN02494 adenosylhomocysteinase
Probab=93.41 E-value=0.19 Score=61.03 Aligned_cols=100 Identities=18% Similarity=0.138 Sum_probs=67.6
Q ss_pred cccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchH
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni 1088 (1173)
.+.++|+|+|.+|+.+++.+...|.+|+++|.|+.+...+...|+.++ + ++++ +..+|.++.++++. ++
T Consensus 254 GKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv--~------leEa-l~~ADVVI~tTGt~--~v 322 (477)
T PLN02494 254 GKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL--T------LEDV-VSEADIFVTTTGNK--DI 322 (477)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec--c------HHHH-HhhCCEEEECCCCc--cc
Confidence 457899999999999999999999999999999987666666777654 1 2222 34689888877654 33
Q ss_pred HHHHHHHhhCCCceEEEEec--ChhhHHHHHHC
Q 001051 1089 RTVWALSKYFPNVKTFVRAH--DIDHGLNLEKA 1119 (1173)
Q Consensus 1089 ~iv~~ar~l~p~~~IIara~--d~e~~~~L~~a 1119 (1173)
.....+..+-++..++-..+ +.-...-|.++
T Consensus 323 I~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~ 355 (477)
T PLN02494 323 IMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETY 355 (477)
T ss_pred hHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhc
Confidence 33445555555554444444 33344444443
No 106
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=93.29 E-value=0.32 Score=56.27 Aligned_cols=112 Identities=13% Similarity=0.050 Sum_probs=88.3
Q ss_pred cccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecC----CCHHHHhhcCccccCEEEEecCCCcc
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDA----GSREVLHKVGAERACAAAITLDTPGA 1086 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDa----sd~e~Le~agI~~A~~VVi~t~Dd~~ 1086 (1173)
.+.|+|.|-+|...+-.|.+.|.+|+++-+++. ++++++.|+.+...+. .....-.......+|.+|+++..-..
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~q~ 80 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAYQL 80 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEeccccH
Confidence 478999999999999999999966666666655 8899999988887665 22233333445589999999988877
Q ss_pred hHHHHHHHHhhCCCceEEEEecChhhHHHHHHCCCCe
Q 001051 1087 NYRTVWALSKYFPNVKTFVRAHDIDHGLNLEKAGATA 1123 (1173)
Q Consensus 1087 Ni~iv~~ar~l~p~~~IIara~d~e~~~~L~~aGAd~ 1123 (1173)
+-.+........++..|+...+.-.+.+.+++.+...
T Consensus 81 ~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~ 117 (307)
T COG1893 81 EEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKE 117 (307)
T ss_pred HHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcc
Confidence 7777777777888888888888888888888876666
No 107
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=93.28 E-value=21 Score=41.82 Aligned_cols=119 Identities=16% Similarity=0.201 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccc-ccc------CchhHHHHHHHHH------HHHHHHHhhcCCh
Q 001051 608 WLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLS-IIR------HVHGTKAIAEFGV------VFLLFNIGLELSV 674 (1173)
Q Consensus 608 lLLl~A~ilg~L~~Rl~~lP~IvG~LLaGILLGP~gLg-li~------~~~~~~~LaeLGL------~~LLF~aGLEldl 674 (1173)
+.++++.++-++.-|-..=|-++.-|-.|+++.+..+. ..+ ....+..+.++|+ .++++-+|-=+|+
T Consensus 6 vMi~vg~~liYLai~k~~EPlLLlPigfG~il~N~P~~~~~~~~~~~~~~g~l~~~~~~gi~~~l~P~LIF~GIGAmtDF 85 (360)
T PF03977_consen 6 VMILVGFLLIYLAIKKKYEPLLLLPIGFGMILVNIPLSGLMDQPVGGGEIGGLQPIYYFGISNGLFPPLIFMGIGAMTDF 85 (360)
T ss_pred HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHhcCchhhcccccccCCCChHHHHHHHhhhcchhhHHHHHHHhHHHhh
Confidence 34444555555555441356677778889999864322 221 1233444444443 5566678999999
Q ss_pred hHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHHH
Q 001051 675 ERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVV 729 (1173)
Q Consensus 675 ~~Lrr~~k~il~La~~~vllt~~~vgll~~~llGls~~~ALlLGaiLS~TSpaVV 729 (1173)
.-+..+.+..+.-+..++-+ + .++....++|++...|.-+|.+-.+=.|..+
T Consensus 86 gpllanP~~~llGaaAQ~Gi-f--~t~~~A~~lGf~~~eAAsIgIIGgADGPtsI 137 (360)
T PF03977_consen 86 GPLLANPKTLLLGAAAQFGI-F--ATFLGAILLGFTPKEAASIGIIGGADGPTSI 137 (360)
T ss_pred HHHHhCHHHHHHHHHHHHhH-H--HHHHHHHHhCCCHHHhhHhhhcccCCCcHHH
Confidence 99999998865544444432 1 2334444569999999988887665555443
No 108
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=93.24 E-value=0.17 Score=54.27 Aligned_cols=119 Identities=19% Similarity=0.176 Sum_probs=65.9
Q ss_pred cccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcC--------------ccccCE
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVG--------------AERACA 1076 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~ag--------------I~~A~~ 1076 (1173)
++.|+|.|.+|..+|-.|.+.|++|+.+|.|+++++.+.+-..++ .++.-.+.+++.. +.++|+
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~--~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv 79 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPI--YEPGLDELLKENVSAGRLRATTDIEEAIKDADV 79 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS---CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SE
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccc--cccchhhhhccccccccchhhhhhhhhhhccce
Confidence 467899999999999999999999999999999999887654444 2455555554332 567999
Q ss_pred EEEecCCCcc-----hH----H-HHHHHHhhCCCceEEEEecCh------hhHHHHHHCC-----CCeeecCCcHH
Q 001051 1077 AAITLDTPGA-----NY----R-TVWALSKYFPNVKTFVRAHDI------DHGLNLEKAG-----ATAVVPETLEP 1131 (1173)
Q Consensus 1077 VVi~t~Dd~~-----Ni----~-iv~~ar~l~p~~~IIara~d~------e~~~~L~~aG-----Ad~VI~p~~~a 1131 (1173)
++++.+.|.. ++ . +-..++.+.++.-++.++.-+ ....+|++.+ .+.+.+|++..
T Consensus 80 ~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~ 155 (185)
T PF03721_consen 80 VFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLR 155 (185)
T ss_dssp EEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------
T ss_pred EEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccC
Confidence 9999876521 11 1 222334445553344444321 2334555544 36777887765
No 109
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=93.22 E-value=2.6 Score=44.77 Aligned_cols=109 Identities=19% Similarity=0.248 Sum_probs=67.1
Q ss_pred CCchHHHHHHHHHhhccccc-c-cccCchhHHHHHHHHHHHHHHHHhhcCChhHHH---hchhhHHHHHHHHHHHHHHHH
Q 001051 625 GGSPVLGYLAAGILIGPYGL-S-IIRHVHGTKAIAEFGVVFLLFNIGLELSVERLS---SMKKYVFGLGSAQVLVTAVVV 699 (1173)
Q Consensus 625 ~lP~IvG~LLaGILLGP~gL-g-li~~~~~~~~LaeLGL~~LLF~aGLEldl~~Lr---r~~k~il~La~~~vllt~~~v 699 (1173)
++-...|-+++|+++|...- + ...+......+.++|+.++++.+|++--..-+. +.+.+...++++-.+++.++.
T Consensus 22 ~LG~a~G~L~vgL~~G~~~~~~~~~~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i~~~~~~~~ 101 (169)
T PF06826_consen 22 SLGAAGGVLFVGLILGALGRTGPIFLPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVIITLVPLLIA 101 (169)
T ss_pred eccccHHHHHHHHHHHHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33444589999999996521 1 112445668999999999999999988766444 444455555666555555555
Q ss_pred HHHHHHHhCCChHHHHHHhhccccCcHHHHHHHHH
Q 001051 700 GLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQ 734 (1173)
Q Consensus 700 gll~~~llGls~~~ALlLGaiLS~TSpaVVv~vL~ 734 (1173)
.++.++++++++....-+ ..=+.|+|+..-....
T Consensus 102 ~~~~~~~~~l~~~~~~G~-~aGa~T~tp~L~~A~~ 135 (169)
T PF06826_consen 102 LVIGRYLFKLNPGIAAGI-LAGALTSTPALAAAQE 135 (169)
T ss_pred HHHHHHHcCCCHHHHHHH-HHccccCcHHHHHHHH
Confidence 555566888886532211 1123455554444443
No 110
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=93.21 E-value=0.39 Score=55.34 Aligned_cols=113 Identities=12% Similarity=0.098 Sum_probs=76.3
Q ss_pred cccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhC-CCCEEEecCCCHHHH-----hhcCccccCEEEEecCCC
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL-DLPVYFGDAGSREVL-----HKVGAERACAAAITLDTP 1084 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~-g~~vi~GDasd~e~L-----e~agI~~A~~VVi~t~Dd 1084 (1173)
++.|+|.|-+|..++-.|.+.|++|+++++..++++.+++. |+.+. .+... ..+ ........|.|++++-..
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~-~~g~~-~~~~~~~~~~~~~~~~D~viv~vK~~ 81 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLV-EQGQA-SLYAIPAETADAAEPIHRLLLACKAY 81 (305)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEe-eCCcc-eeeccCCCCcccccccCEEEEECCHH
Confidence 58999999999999999999999999999988888888754 55332 22111 111 011234689999999766
Q ss_pred cchHHHHHHHHhhCCCceEEEEecChhhHHHHHHC-CCCeee
Q 001051 1085 GANYRTVWALSKYFPNVKTFVRAHDIDHGLNLEKA-GATAVV 1125 (1173)
Q Consensus 1085 ~~Ni~iv~~ar~l~p~~~IIara~d~e~~~~L~~a-GAd~VI 1125 (1173)
...-.+........++..|+...+--.+.+.+.+. +.+.|+
T Consensus 82 ~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~~~~v~ 123 (305)
T PRK05708 82 DAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVPHARCI 123 (305)
T ss_pred hHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCCCCcEE
Confidence 43333333444456787788888877776666543 555444
No 111
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=93.11 E-value=0.61 Score=53.19 Aligned_cols=105 Identities=18% Similarity=0.105 Sum_probs=68.9
Q ss_pred ccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchHHHH--
Q 001051 1014 LCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTV-- 1091 (1173)
Q Consensus 1014 IiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni~iv-- 1091 (1173)
++|.|.+|..+++.|.+.|++|++.|+++++++.+.+.|.... .++. + -++++|.|+++++++..--.+.
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~----~s~~---~-~~~~advVil~vp~~~~~~~v~~g 72 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAA----ASPA---E-AAEGADRVITMLPAGQHVISVYSG 72 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeec----CCHH---H-HHhcCCEEEEeCCChHHHHHHHcC
Confidence 5799999999999999999999999999999999887775321 1221 1 1456899999999864322222
Q ss_pred -HHHH-hhCCCceEEEEecC--hhh----HHHHHHCCCCeeecC
Q 001051 1092 -WALS-KYFPNVKTFVRAHD--IDH----GLNLEKAGATAVVPE 1127 (1173)
Q Consensus 1092 -~~ar-~l~p~~~IIara~d--~e~----~~~L~~aGAd~VI~p 1127 (1173)
..+. ...++ ++++-..+ ++. .+.+++.|++.|-.|
T Consensus 73 ~~~l~~~~~~g-~~vid~st~~p~~~~~~~~~~~~~g~~~vdaP 115 (288)
T TIGR01692 73 DEGILPKVAKG-SLLIDCSTIDPDSARKLAELAAAHGAVFMDAP 115 (288)
T ss_pred cchHhhcCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCcEEECC
Confidence 1222 23343 34443333 333 345566788866654
No 112
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=93.10 E-value=4 Score=53.33 Aligned_cols=64 Identities=22% Similarity=0.279 Sum_probs=38.0
Q ss_pred hhHHHHHhhhHHHHHHHHHhhHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 001051 267 DGLLLAAENDIKECQANLANCETELRRL-------QSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIM 330 (1173)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~q~~~~~~~~~~~~~~~~~~~a~~~~~~~m 330 (1173)
+.|+.-|-+||+..|..|++-++|.+.- ..+..||.+.|..|.-++.+--.+|..||+.|-.+-
T Consensus 1583 ~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~ 1653 (1758)
T KOG0994|consen 1583 QDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAK 1653 (1758)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3466666666776666666666655544 445566666666666666555555555555554443
No 113
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=92.94 E-value=7.6 Score=41.56 Aligned_cols=98 Identities=18% Similarity=0.259 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhhcCChhHHHhchhhHHH--HHH-HHHHHHHHHHHHHHH-HHhCCChHHHHHHhhccccCcHH-HHHHHH
Q 001051 659 FGVVFLLFNIGLELSVERLSSMKKYVFG--LGS-AQVLVTAVVVGLVAH-FVSGLPGPASIVIGNGLALSSTA-VVLQVL 733 (1173)
Q Consensus 659 LGL~~LLF~aGLEldl~~Lrr~~k~il~--La~-~~vllt~~~vgll~~-~llGls~~~ALlLGaiLS~TSpa-VVv~vL 733 (1173)
+.+.++||..|++++++++++..|+... .++ .++++..+ +++... .+++.+.. +.+|.++...+|. ....+.
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Pl-la~~l~~~~~~~~~~--~~~Gl~l~~~~P~~~~s~~~ 78 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPL-LAFGLAWLLLPLSPA--LALGLLLVAACPGGPASNVF 78 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHH-HHHHHH-HHTT--HH--HHHHHHHHHHS-B-THHHHH
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCHH--HHHHHHHHhcCCcHHHHHHH
Confidence 4678899999999999999977655332 222 23333222 333333 44454443 4444444444442 333334
Q ss_pred HhcCCCCCchhHHHHHHHhhhhHHHHHHH
Q 001051 734 QERGESTSRHGRATFSVLLFQDLAVVVLL 762 (1173)
Q Consensus 734 ~elg~l~s~~grl~Ls~sllnDi~aIvlf 762 (1173)
......+. .+..+...++.+.++++.
T Consensus 79 t~l~~Gd~---~ls~~lt~istll~~~~~ 104 (187)
T PF01758_consen 79 TYLAGGDV---ALSVSLTLISTLLAPFLM 104 (187)
T ss_dssp HHHTT--H---HHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCc---ccccceeeHHHHHHHHHH
Confidence 33322121 233444556666666555
No 114
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=92.84 E-value=0.24 Score=56.98 Aligned_cols=108 Identities=20% Similarity=0.147 Sum_probs=74.7
Q ss_pred cccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchH
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni 1088 (1173)
..+++|+|+|..|+.++..|...|.+|+++|++++..++.++.|...+. .+.+.+ .+.++|.||.+++...
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~-----~~~l~~-~l~~aDiVI~t~p~~~--- 222 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFH-----LSELAE-EVGKIDIIFNTIPALV--- 222 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeec-----HHHHHH-HhCCCCEEEECCChhh---
Confidence 4579999999999999999999999999999999888777777765442 122322 2457999999886532
Q ss_pred HHHHHHHhhCCCceEEEEecChhhH--HHHHHCCCCeee
Q 001051 1089 RTVWALSKYFPNVKTFVRAHDIDHG--LNLEKAGATAVV 1125 (1173)
Q Consensus 1089 ~iv~~ar~l~p~~~IIara~d~e~~--~~L~~aGAd~VI 1125 (1173)
.....++...|+..+|=.+.++-.. ...++.|+..+.
T Consensus 223 i~~~~l~~~~~g~vIIDla~~pggtd~~~a~~~Gv~~~~ 261 (296)
T PRK08306 223 LTKEVLSKMPPEALIIDLASKPGGTDFEYAEKRGIKALL 261 (296)
T ss_pred hhHHHHHcCCCCcEEEEEccCCCCcCeeehhhCCeEEEE
Confidence 1222334455665555555554222 345678888874
No 115
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=92.83 E-value=0.2 Score=59.31 Aligned_cols=112 Identities=18% Similarity=0.072 Sum_probs=79.0
Q ss_pred ccccCCCccHHHHHHHHHhCCC--CeEEecCCchHHHhhhh----CCCCEEEecCCCHHHHhhcCccccCEEEEecCCCc
Q 001051 1012 IILCGFGRVGQIIAQLLSERLI--PFVALDVRSDRVAIGRA----LDLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1173)
Q Consensus 1012 vIIiG~G~~G~~Ia~~L~~~gi--~VvVID~D~e~ve~l~~----~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~ 1085 (1173)
|+|+|+|.+|+.+++.|.+++. ++++.|+|.++.+++.+ ..+..+..|..|++.|.++ ++++|.||-+.+..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~-~~~~dvVin~~gp~- 78 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAEL-LRGCDVVINCAGPF- 78 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHH-HTTSSEEEE-SSGG-
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHH-HhcCCEEEECCccc-
Confidence 5789999999999999998764 89999999999887754 4678889999999999887 78889999888766
Q ss_pred chHHHHHHHHhhCCCceEEEEec----ChhhHHHHHHCCCCeeecC
Q 001051 1086 ANYRTVWALSKYFPNVKTFVRAH----DIDHGLNLEKAGATAVVPE 1127 (1173)
Q Consensus 1086 ~Ni~iv~~ar~l~p~~~IIara~----d~e~~~~L~~aGAd~VI~p 1127 (1173)
.+..++..+.+...+ .+=.+. -....+..++.|...++.-
T Consensus 79 ~~~~v~~~~i~~g~~--yvD~~~~~~~~~~l~~~a~~~g~~~l~~~ 122 (386)
T PF03435_consen 79 FGEPVARACIEAGVH--YVDTSYVTEEMLALDEEAKEAGVTALPGC 122 (386)
T ss_dssp GHHHHHHHHHHHT-E--EEESS-HHHHHHHCHHHHHHTTSEEE-S-
T ss_pred hhHHHHHHHHHhCCC--eeccchhHHHHHHHHHHHHhhCCEEEeCc
Confidence 777777777777653 222211 1234455566788777643
No 116
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=92.82 E-value=0.29 Score=59.50 Aligned_cols=101 Identities=19% Similarity=0.105 Sum_probs=68.0
Q ss_pred cccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchH
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni 1088 (1173)
.+.++|+|+|++|+.+++.|...|.+|+++|.|+.+.......|+.++ .++++ ++.+|.|+.+++.. ++
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~--------~leel-l~~ADIVI~atGt~--~i 322 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVV--------TLEDV-VETADIFVTATGNK--DI 322 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceec--------cHHHH-HhcCCEEEECCCcc--cc
Confidence 357899999999999999999999999999999887655555565543 12332 45799999887643 33
Q ss_pred HHHHHHHhhCCCceEEEEecCh--hhHHHHHHCC
Q 001051 1089 RTVWALSKYFPNVKTFVRAHDI--DHGLNLEKAG 1120 (1173)
Q Consensus 1089 ~iv~~ar~l~p~~~IIara~d~--e~~~~L~~aG 1120 (1173)
.-...+..+-|+..++-..+.. ....-|+..+
T Consensus 323 I~~e~~~~MKpGAiLINvGr~d~Ei~i~aL~~~~ 356 (476)
T PTZ00075 323 ITLEHMRRMKNNAIVGNIGHFDNEIQVAELEAYP 356 (476)
T ss_pred cCHHHHhccCCCcEEEEcCCCchHHhHHHHHhcC
Confidence 3345555566665554444432 2334455544
No 117
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=92.82 E-value=0.26 Score=56.63 Aligned_cols=96 Identities=11% Similarity=0.001 Sum_probs=61.2
Q ss_pred cccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEE-ec------CCCHHHHhhcCccccCEEEEecCC
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYF-GD------AGSREVLHKVGAERACAAAITLDT 1083 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~-GD------asd~e~Le~agI~~A~~VVi~t~D 1083 (1173)
++.|+|.|.+|..++..|.+.|++|.++|++++.++.+++.+....+ ++ ..-....++ -++++|.+++++++
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vi~~v~~ 81 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAE-ALADADLILVAVPS 81 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHH-HHhCCCEEEEeCCH
Confidence 47899999999999999999999999999999998888766432211 00 100011111 13578999999988
Q ss_pred CcchHHHHHHHHhhCCCceEEEEe
Q 001051 1084 PGANYRTVWALSKYFPNVKTFVRA 1107 (1173)
Q Consensus 1084 d~~Ni~iv~~ar~l~p~~~IIara 1107 (1173)
....-.+........++..++...
T Consensus 82 ~~~~~v~~~l~~~~~~~~~vi~~~ 105 (325)
T PRK00094 82 QALREVLKQLKPLLPPDAPIVWAT 105 (325)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEEe
Confidence 643222222222334554445444
No 118
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=92.71 E-value=0.12 Score=50.04 Aligned_cols=79 Identities=14% Similarity=0.034 Sum_probs=58.4
Q ss_pred cccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchH
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni 1088 (1173)
.++++|+|+|+.+..-++.|.+.|.+++++.++.+..+ ..... ..+. ++ ..+.+++.|+++++|++.|-
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~----~~i~~-~~~~-----~~-~~l~~~~lV~~at~d~~~n~ 75 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE----GLIQL-IRRE-----FE-EDLDGADLVFAATDDPELNE 75 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH----TSCEE-EESS------G-GGCTTESEEEE-SS-HHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh----hHHHH-Hhhh-----HH-HHHhhheEEEecCCCHHHHH
Confidence 35789999999999999999999999999999872222 12222 2222 12 34778999999999999999
Q ss_pred HHHHHHHhhC
Q 001051 1089 RTVWALSKYF 1098 (1173)
Q Consensus 1089 ~iv~~ar~l~ 1098 (1173)
.+...+|+.+
T Consensus 76 ~i~~~a~~~~ 85 (103)
T PF13241_consen 76 AIYADARARG 85 (103)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHhhCC
Confidence 9999998764
No 119
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=92.69 E-value=0.25 Score=59.17 Aligned_cols=66 Identities=15% Similarity=0.109 Sum_probs=52.1
Q ss_pred cccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCC
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDT 1083 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~D 1083 (1173)
.+.++|+|+|.+|..+++.++..|.+|+++|.|+.+...+...|+.++. . .+. +.++|.+|.++++
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~--l--eea-----l~~aDVVItaTG~ 260 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMT--M--EEA-----AKIGDIFITATGN 260 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeCC--H--HHH-----HhcCCEEEECCCC
Confidence 4578999999999999999999999999999999887666666765431 1 222 3568888888765
No 120
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=92.67 E-value=3.7 Score=51.57 Aligned_cols=130 Identities=16% Similarity=0.204 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHhhccccc-cccc---CchhHHHHHHHHHHHHHHHHhhcCChhH
Q 001051 605 DVLWLLLASVIFVPIFQKIPGGS----PVLGYLAAGILIGPYGL-SIIR---HVHGTKAIAEFGVVFLLFNIGLELSVER 676 (1173)
Q Consensus 605 ~l~lLLl~A~ilg~L~~Rl~~lP----~IvG~LLaGILLGP~gL-gli~---~~~~~~~LaeLGL~~LLF~aGLEldl~~ 676 (1173)
.+.+.++++++++.+--.+..+| ...|-+++|+++|..+- +... +.....++.++|+.++++.+|++--..-
T Consensus 390 ~l~l~i~lg~llg~i~~~~g~vp~~lg~~~g~l~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vG~~aG~~f 469 (562)
T TIGR03802 390 FLGLGIVLGLLIGAIVVKIGSIPLTLGTGGGALISGLVFGWLRSKHPTFGNIPSSASWLLKDLGLALFIAVVGLSAGPQA 469 (562)
T ss_pred hHHHHHHHHHHHheeeeecCCcceeehhhHHHHHHHHHHHHhcccCCcceecCHHHHHHHHHHhHHHHHHHHHHhhhHHH
Confidence 34444444555553222222233 34588999999997531 1111 1223457999999999999999887764
Q ss_pred HH---hchhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhh-ccccCcHHHHHHHHHhc
Q 001051 677 LS---SMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGN-GLALSSTAVVLQVLQER 736 (1173)
Q Consensus 677 Lr---r~~k~il~La~~~vllt~~~vgll~~~llGls~~~ALlLGa-iLS~TSpaVVv~vL~el 736 (1173)
+. +.+...+.++++-++++.++..++.++++++++.. .+|+ +=+.|+|+.........
T Consensus 470 ~~~l~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~G~~aG~~t~t~~l~~a~~~~ 531 (562)
T TIGR03802 470 VTAIKEMGLTLFLLGIVVTILPLIITMLIGKYVLKYDPAL--LLGALAGARTATPALGAVLERA 531 (562)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH--HHHHhhccCCCcHHHHHHHHhc
Confidence 44 44445555555555555555556666788888763 3343 34567777666555433
No 121
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=92.62 E-value=0.57 Score=51.88 Aligned_cols=75 Identities=16% Similarity=0.146 Sum_probs=56.0
Q ss_pred cccccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhh--CCCCEEEecCCC-HHHHhhcCccccCEEEEecCC
Q 001051 1009 QDHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA--LDLPVYFGDAGS-REVLHKVGAERACAAAITLDT 1083 (1173)
Q Consensus 1009 k~hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~--~g~~vi~GDasd-~e~Le~agI~~A~~VVi~t~D 1083 (1173)
...++|+| .|.+|+.+++.|.+.|++|+++.+++++...... .+..++.||..+ .+.|.+.-..++|.|+..++.
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~g~ 95 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICATGF 95 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEECCCC
Confidence 34678888 5999999999999999999999888877654432 357889999998 455544321468888877653
No 122
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=92.62 E-value=0.39 Score=55.78 Aligned_cols=104 Identities=13% Similarity=0.013 Sum_probs=66.2
Q ss_pred cccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCC----------CHHHHhhcCccccCEEEEe
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAG----------SREVLHKVGAERACAAAIT 1080 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDas----------d~e~Le~agI~~A~~VVi~ 1080 (1173)
++.|+|.|.+|..++..|.+.|++|+++|+++. .+.+++.|..+...+.. -....+ .+.++|.|+++
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~D~vil~ 80 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPA--ALATADLVLVT 80 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccChh--hccCCCEEEEE
Confidence 588999999999999999999999999998753 46666666544321110 001112 24689999999
Q ss_pred cCCCcchHHHHHHHHhh-CCCceEEEEecChhhHHHHHH
Q 001051 1081 LDTPGANYRTVWALSKY-FPNVKTFVRAHDIDHGLNLEK 1118 (1173)
Q Consensus 1081 t~Dd~~Ni~iv~~ar~l-~p~~~IIara~d~e~~~~L~~ 1118 (1173)
+..+.. ..++..+... .++..++...+.....+.+++
T Consensus 81 vk~~~~-~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~ 118 (341)
T PRK08229 81 VKSAAT-ADAAAALAGHARPGAVVVSFQNGVRNADVLRA 118 (341)
T ss_pred ecCcch-HHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHH
Confidence 987753 3334444433 455444445555555555544
No 123
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=92.55 E-value=15 Score=49.40 Aligned_cols=13 Identities=54% Similarity=0.498 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 001051 152 ELRELLMNAMKEL 164 (1173)
Q Consensus 152 ~~~~~l~~~~~~~ 164 (1173)
+++.-++...+++
T Consensus 709 ~l~~~~~~~~~~~ 721 (1179)
T TIGR02168 709 ELEEELEQLRKEL 721 (1179)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 124
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=92.49 E-value=1.1 Score=59.40 Aligned_cols=122 Identities=15% Similarity=0.099 Sum_probs=89.1
Q ss_pred ccccccccCCCccHHHHHHHHHhC-CCC-------------eEEecCCchHHHhhhhC--CCCEEEecCCCHHHHhhcCc
Q 001051 1008 LQDHIILCGFGRVGQIIAQLLSER-LIP-------------FVALDVRSDRVAIGRAL--DLPVYFGDAGSREVLHKVGA 1071 (1173)
Q Consensus 1008 lk~hvIIiG~G~~G~~Ia~~L~~~-gi~-------------VvVID~D~e~ve~l~~~--g~~vi~GDasd~e~Le~agI 1071 (1173)
..++++|+|.|.+|+.+++.|.+. +++ |+|.|.+++..+.+.+. +...+..|.+|.+.|.++ +
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~-v 646 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKY-V 646 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHh-h
Confidence 356899999999999999999764 333 99999999888877542 677899999999988875 4
Q ss_pred cccCEEEEecCCCcchHHHHHHHHhhCCCceEEEEecChhhHHH----HHHCCCCeeecCCcHHHH
Q 001051 1072 ERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDIDHGLN----LEKAGATAVVPETLEPSL 1133 (1173)
Q Consensus 1072 ~~A~~VVi~t~Dd~~Ni~iv~~ar~l~p~~~IIara~d~e~~~~----L~~aGAd~VI~p~~~aa~ 1133 (1173)
.++|+||++++.. .+..++..+-+...+ ++....+.+.... .+++|+.-++---+.+|.
T Consensus 647 ~~~DaVIsalP~~-~H~~VAkaAieaGkH--vv~eky~~~e~~~L~e~Ak~AGV~~m~e~GlDPGi 709 (1042)
T PLN02819 647 SQVDVVISLLPAS-CHAVVAKACIELKKH--LVTASYVSEEMSALDSKAKEAGITILCEMGLDPGI 709 (1042)
T ss_pred cCCCEEEECCCch-hhHHHHHHHHHcCCC--EEECcCCHHHHHHHHHHHHHcCCEEEECCccCHHH
Confidence 4699999999986 567777777777654 5555566555543 356676655533334433
No 125
>PRK04863 mukB cell division protein MukB; Provisional
Probab=92.48 E-value=3.8 Score=56.62 Aligned_cols=31 Identities=29% Similarity=0.154 Sum_probs=15.7
Q ss_pred HHHHHHHHHhhhcccHHHHHHHHHHhhcCCC
Q 001051 335 QAVAFEIEATQRVNDAEIALQRAEKSLSNSS 365 (1173)
Q Consensus 335 ~av~~e~e~~~~~~~~~~~~~~~~~~~~~~~ 365 (1173)
+--+-.-|.++.+++.|.-+..+++.++...
T Consensus 446 nF~aklee~e~qL~elE~kL~~lea~leql~ 476 (1486)
T PRK04863 446 EFQAKEQEATEELLSLEQKLSVAQAAHSQFE 476 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444455555555555555555554443
No 126
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=92.42 E-value=26 Score=40.84 Aligned_cols=115 Identities=14% Similarity=0.118 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHhhccc---ccccccCchhHHHHHHHHH------HHHHHHHhhcCChhHHHhc
Q 001051 610 LLASVIFVPIFQKIPGGSPVLGYLAAGILIGPY---GLSIIRHVHGTKAIAEFGV------VFLLFNIGLELSVERLSSM 680 (1173)
Q Consensus 610 Ll~A~ilg~L~~Rl~~lP~IvG~LLaGILLGP~---gLgli~~~~~~~~LaeLGL------~~LLF~aGLEldl~~Lrr~ 680 (1173)
++++.++-++..+-.-=|-++.-+-.|+++.+. ++|.+.+...+..+.++|+ .++++-+|-=+|+.-+..+
T Consensus 6 i~ig~~LiYLai~k~~EPlLLiPigfG~il~NiP~~~~g~~~~gg~l~~~~~~gi~~~l~P~LIFlGIGAmtDFgpllan 85 (354)
T TIGR01109 6 LLVSLLLLYLAIAKKFEPLLLIPIGFGGILSNIPEAGLGLTAEGGILALFYKVGIGSGIAPLLIFMGIGALTDFGPLLAN 85 (354)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCccccccccCCchHHHHHHHHHhcchHHHHHHHhccHHhhhHHHHhC
Confidence 334444445554431346667778888888853 2233333234444444443 4556668889999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCC------ChHHHHHHhhccccCcHH
Q 001051 681 KKYVFGLGSAQVLVTAVVVGLVAHFVSGL------PGPASIVIGNGLALSSTA 727 (1173)
Q Consensus 681 ~k~il~La~~~vllt~~~vgll~~~llGl------s~~~ALlLGaiLS~TSpa 727 (1173)
.+..+.-+..++-+ + +++.....+|+ +...|.-+|.+-.+-.|.
T Consensus 86 P~~~llGaaAQ~Gi-F--~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGPt 135 (354)
T TIGR01109 86 PRTLLLGAAAQFGI-F--ATVFGALTLNFFGIISFSLPQAAAIGIIGGADGPT 135 (354)
T ss_pred hHHHHHHHHHHhhH-H--HHHHHHHHhCCCcccccChhhceeeeeeccCCCch
Confidence 88655555544432 1 22223334566 557777777665544443
No 127
>PRK05993 short chain dehydrogenase; Provisional
Probab=92.40 E-value=0.18 Score=56.55 Aligned_cols=72 Identities=19% Similarity=0.103 Sum_probs=58.5
Q ss_pred ccccccCC-CccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcC--c-----cccCEEEEec
Q 001051 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVG--A-----ERACAAAITL 1081 (1173)
Q Consensus 1010 ~hvIIiG~-G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~ag--I-----~~A~~VVi~t 1081 (1173)
+.++|.|. |.+|..+++.|.++|++|++++++++..+.+.+.+..++.+|.+|++.++++- + ...|.+|-..
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~li~~A 84 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEAEGLEAFQLDYAEPESIAALVAQVLELSGGRLDALFNNG 84 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCceEEEccCCCHHHHHHHHHHHHHHcCCCccEEEECC
Confidence 46778886 88999999999999999999999999888887778889999999998765431 1 2457776643
No 128
>PLN02688 pyrroline-5-carboxylate reductase
Probab=92.39 E-value=0.6 Score=52.30 Aligned_cols=105 Identities=18% Similarity=0.148 Sum_probs=66.0
Q ss_pred ccccCCCccHHHHHHHHHhCCC----CeEEe-cCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcc
Q 001051 1012 IILCGFGRVGQIIAQLLSERLI----PFVAL-DVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1173)
Q Consensus 1012 vIIiG~G~~G~~Ia~~L~~~gi----~VvVI-D~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~ 1086 (1173)
+-++|.|.+|..+++.|.+.|+ ++++. ++++++.+.+.+.|..+. .+.. ++ ++++|.|+++++ +..
T Consensus 3 I~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~----~~~~---e~-~~~aDvVil~v~-~~~ 73 (266)
T PLN02688 3 VGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTA----ASNT---EV-VKSSDVIILAVK-PQV 73 (266)
T ss_pred EEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEe----CChH---HH-HhcCCEEEEEEC-cHH
Confidence 5689999999999999999887 78888 999999888877776432 1221 11 347899999995 433
Q ss_pred hHHHHHHHHhh-CCCceEEEEecChhhHHHHHHCCCCeee
Q 001051 1087 NYRTVWALSKY-FPNVKTFVRAHDIDHGLNLEKAGATAVV 1125 (1173)
Q Consensus 1087 Ni~iv~~ar~l-~p~~~IIara~d~e~~~~L~~aGAd~VI 1125 (1173)
...+...++.. .++..+|..+.........+..|..+++
T Consensus 74 ~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~~vv 113 (266)
T PLN02688 74 VKDVLTELRPLLSKDKLLVSVAAGITLADLQEWAGGRRVV 113 (266)
T ss_pred HHHHHHHHHhhcCCCCEEEEecCCCcHHHHHHHcCCCCEE
Confidence 33333334332 3443334333444433333445554444
No 129
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=92.37 E-value=0.2 Score=60.38 Aligned_cols=67 Identities=16% Similarity=0.139 Sum_probs=52.3
Q ss_pred cccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCC
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd 1084 (1173)
.+.++|+|+|.+|+.+++.|+..|.+|+++|.|+.+.......|+.++ + ++++ ++.+|.+|.++++.
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~--~------l~ea-l~~aDVVI~aTG~~ 278 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVM--T------MEEA-AELGDIFVTATGNK 278 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEec--C------HHHH-HhCCCEEEECCCCH
Confidence 357999999999999999999999999999999988766666676543 1 1222 34789988888653
No 130
>PRK08017 oxidoreductase; Provisional
Probab=92.36 E-value=0.2 Score=54.98 Aligned_cols=59 Identities=20% Similarity=0.209 Sum_probs=51.8
Q ss_pred ccccccCC-CccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhh
Q 001051 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHK 1068 (1173)
Q Consensus 1010 ~hvIIiG~-G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~ 1068 (1173)
+.++|.|. |.+|..+++.|.++|++|+++++++++.+.+++.+...+.+|.++++.+++
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 62 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMNSLGFTGILLDLDDPESVER 62 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHHhCCCeEEEeecCCHHHHHH
Confidence 45888887 999999999999999999999999988887777788899999999877654
No 131
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=92.33 E-value=0.29 Score=45.96 Aligned_cols=85 Identities=12% Similarity=0.110 Sum_probs=56.5
Q ss_pred ccccCCCccHHHHHHHHHhCC---CCeEEe-cCCchHHHhhhhC-CCCEEEecCCCHHHHhhcCccccCEEEEecCCCcc
Q 001051 1012 IILCGFGRVGQIIAQLLSERL---IPFVAL-DVRSDRVAIGRAL-DLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1173)
Q Consensus 1012 vIIiG~G~~G~~Ia~~L~~~g---i~VvVI-D~D~e~ve~l~~~-g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~ 1086 (1173)
+.++|+|.+|..+++.|.+.| .++.++ ++++++.+++.+. +..+... ++.+.++ ++|.|+++++....
T Consensus 2 I~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~-----~advvilav~p~~~ 74 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATAD--DNEEAAQ-----EADVVILAVKPQQL 74 (96)
T ss_dssp EEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESE--EHHHHHH-----HTSEEEE-S-GGGH
T ss_pred EEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccC--ChHHhhc-----cCCEEEEEECHHHH
Confidence 467899999999999999999 899977 9999999888544 4444432 3444444 68889999877543
Q ss_pred hHHHHHHHHhhCCCceEEE
Q 001051 1087 NYRTVWALSKYFPNVKTFV 1105 (1173)
Q Consensus 1087 Ni~iv~~ar~l~p~~~IIa 1105 (1173)
-- +...+....++ ++++
T Consensus 75 ~~-v~~~i~~~~~~-~~vi 91 (96)
T PF03807_consen 75 PE-VLSEIPHLLKG-KLVI 91 (96)
T ss_dssp HH-HHHHHHHHHTT-SEEE
T ss_pred HH-HHHHHhhccCC-CEEE
Confidence 22 33333444444 3444
No 132
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=92.29 E-value=0.67 Score=52.12 Aligned_cols=116 Identities=16% Similarity=0.041 Sum_probs=75.9
Q ss_pred ccccCC-CccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcC-----ccc-cCEEEEecCCC
Q 001051 1012 IILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVG-----AER-ACAAAITLDTP 1084 (1173)
Q Consensus 1012 vIIiG~-G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~ag-----I~~-A~~VVi~t~Dd 1084 (1173)
++|.|. |.+|..+++.|.+.|++|.++.++++... ..+..++.+|..|++.|..+= +.. ++.++...+..
T Consensus 2 ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~---~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~ 78 (285)
T TIGR03649 2 ILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSA---GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPI 78 (285)
T ss_pred EEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCcccc---CCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCC
Confidence 455564 99999999999999999999999987543 347778899999999998752 244 78877666532
Q ss_pred c----chHHHHHHHHhhCCCceEEEEec-C-----h---hhHHHHHHC-CCCeee-cCCcHH
Q 001051 1085 G----ANYRTVWALSKYFPNVKTFVRAH-D-----I---DHGLNLEKA-GATAVV-PETLEP 1131 (1173)
Q Consensus 1085 ~----~Ni~iv~~ar~l~p~~~IIara~-d-----~---e~~~~L~~a-GAd~VI-~p~~~a 1131 (1173)
. .-..+...+++.+.+ ++|.... . . .....++.. |++.++ +|....
T Consensus 79 ~~~~~~~~~~i~aa~~~gv~-~~V~~Ss~~~~~~~~~~~~~~~~l~~~~gi~~tilRp~~f~ 139 (285)
T TIGR03649 79 PDLAPPMIKFIDFARSKGVR-RFVLLSASIIEKGGPAMGQVHAHLDSLGGVEYTVLRPTWFM 139 (285)
T ss_pred CChhHHHHHHHHHHHHcCCC-EEEEeeccccCCCCchHHHHHHHHHhccCCCEEEEeccHHh
Confidence 1 112344566666654 4443321 1 0 112445665 887754 565433
No 133
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=92.25 E-value=0.67 Score=52.79 Aligned_cols=107 Identities=11% Similarity=0.040 Sum_probs=69.9
Q ss_pred ccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchHHHH
Q 001051 1012 IILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTV 1091 (1173)
Q Consensus 1012 vIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni~iv 1091 (1173)
+-|+|.|.+|..++..|.+.|++|++.|+++++.+.+.+.|.... .+.. + -++++|.|+++++++..-..+.
T Consensus 2 IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~----~~~~---~-~~~~aDivi~~vp~~~~~~~v~ 73 (291)
T TIGR01505 2 VGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTA----ETAR---Q-VTEQADVIFTMVPDSPQVEEVA 73 (291)
T ss_pred EEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCccc----CCHH---H-HHhcCCEEEEecCCHHHHHHHH
Confidence 568899999999999999999999999999999998887765321 2221 1 1347899999998763221121
Q ss_pred ---H-HHHhhCCCceEEEEecC--h----hhHHHHHHCCCCeeecC
Q 001051 1092 ---W-ALSKYFPNVKTFVRAHD--I----DHGLNLEKAGATAVVPE 1127 (1173)
Q Consensus 1092 ---~-~ar~l~p~~~IIara~d--~----e~~~~L~~aGAd~VI~p 1127 (1173)
. .+....++ .+++-..+ + +..+.+++.|+..+-.|
T Consensus 74 ~~~~~~~~~~~~g-~iivd~st~~~~~~~~l~~~l~~~g~~~~~~p 118 (291)
T TIGR01505 74 FGENGIIEGAKPG-KTLVDMSSISPIESKRFAKAVKEKGIDYLDAP 118 (291)
T ss_pred cCcchHhhcCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCCEEecC
Confidence 1 12223343 45554332 3 23445566687766655
No 134
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=92.14 E-value=0.49 Score=57.01 Aligned_cols=73 Identities=21% Similarity=0.272 Sum_probs=54.6
Q ss_pred ccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhh---c-------CccccCEEEE
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHK---V-------GAERACAAAI 1079 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~---a-------gI~~A~~VVi 1079 (1173)
.++.|+|.|.+|..++..|.+.|++|+++|.|+++++.++.-..++. ++.-.+.+.+ . .++++|.+++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~--e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii 81 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIV--EPDLDMVVKTAVEGGYLRATTTPEPADAFLI 81 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcC--CCCHHHHHHHHhhcCceeeecccccCCEEEE
Confidence 35889999999999999999999999999999999998765444432 2222222221 1 1447999999
Q ss_pred ecCCC
Q 001051 1080 TLDTP 1084 (1173)
Q Consensus 1080 ~t~Dd 1084 (1173)
+++++
T Consensus 82 ~vptp 86 (415)
T PRK11064 82 AVPTP 86 (415)
T ss_pred EcCCC
Confidence 99986
No 135
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=92.08 E-value=5.9 Score=45.91 Aligned_cols=114 Identities=17% Similarity=0.165 Sum_probs=70.6
Q ss_pred HHhcCCCchHHHHHHHHHhhccccccccc-CchhHHHHHHHHHHHHHHHHhhcCChhHHHhchhhHHHHHHHHHHHHHHH
Q 001051 620 FQKIPGGSPVLGYLAAGILIGPYGLSIIR-HVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVV 698 (1173)
Q Consensus 620 ~~Rl~~lP~IvG~LLaGILLGP~gLgli~-~~~~~~~LaeLGL~~LLF~aGLEldl~~Lrr~~k~il~La~~~vllt~~~ 698 (1173)
.+|+.+-|.+++ .++|+++...++.+-. -....+.+++...++.||..|+.++.+.+++.++..+...++-.++..+
T Consensus 176 ~~~~~~nP~iia-~i~Gl~~~~~~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~klil~P~- 253 (321)
T TIGR00946 176 WKKLIKFPPLWA-PLLSVILSLVGFKMPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFLVQPA- 253 (321)
T ss_pred HHHHHhCCChHH-HHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHHHHHH-
Confidence 444435676665 5666777754443211 1345689999999999999999999988877767666666665544333
Q ss_pred HHHHHHHHhCCChHHHHHHhhccccCcHHHHHHHHHhc
Q 001051 699 VGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQER 736 (1173)
Q Consensus 699 vgll~~~llGls~~~ALlLGaiLS~TSpaVVv~vL~el 736 (1173)
+++.+..+++.+... .-...+.+...+++...++.+.
T Consensus 254 i~~~~~~~~~l~~~~-~~~~vl~aa~P~a~~~~i~A~~ 290 (321)
T TIGR00946 254 VMAGISKLIGLRGLE-LSVAILQAALPGGAVAAVLATE 290 (321)
T ss_pred HHHHHHHHhCCChHH-HHHHHHHHcCChhhHHHHHHHH
Confidence 234444566776432 2333445556666666666443
No 136
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=91.99 E-value=32 Score=40.80 Aligned_cols=122 Identities=14% Similarity=0.142 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhcccccc-----c-----cc-------------CchhHHHHHHHHH
Q 001051 605 DVLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLS-----I-----IR-------------HVHGTKAIAEFGV 661 (1173)
Q Consensus 605 ~l~lLLl~A~ilg~L~~Rl~~lP~IvG~LLaGILLGP~gLg-----l-----i~-------------~~~~~~~LaeLGL 661 (1173)
.-.+.++++.++-++..+-.-=|-++.-|-.|+++.+..+. . +. +...+..+.++|+
T Consensus 23 ~~~vMi~ig~~LiYLai~k~~EPLLLlPigfG~il~NiP~~~~~~g~~~~~~~~~~~~~~~~~~~~~~gg~L~~~~~~gi 102 (399)
T TIGR03136 23 TRLALIIFGFFLAYLGFKRTLEPLIMVPMGLGMMAVNAGVMFLEAGVIGTLHLDPMVSDPSVLVNLMQINFLQPVYNFTF 102 (399)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCccccccccccccccccccccccchhccccCCcHHHHHHHHHH
Confidence 33444455555555555431346667778888888854321 0 01 0123343444443
Q ss_pred ------HHHHHHHhhcCChhHHHhchhhHHHH-HHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHHH
Q 001051 662 ------VFLLFNIGLELSVERLSSMKKYVFGL-GSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVV 729 (1173)
Q Consensus 662 ------~~LLF~aGLEldl~~Lrr~~k~il~L-a~~~vllt~~~vgll~~~llGls~~~ALlLGaiLS~TSpaVV 729 (1173)
.++++-+|-=+|+.-+..+.+..+.. +..++-+ + +++.....+|++...|.-+|.+-.+=.|..+
T Consensus 103 ~~gl~P~LIFlGIGAMtDFgpllanP~~~ll~gaaAQ~Gi-F--~t~~~A~~lGF~~~eAAsIgIIGgADGPTaI 174 (399)
T TIGR03136 103 SNSLVACILFFGIGAMSDISFILARPWASITVALFAEMGT-F--ATLVIGYYCGLTPGEAAAVGTIGGADGPMVL 174 (399)
T ss_pred hcccHHHHHHHhccHHhcchHHHhChHHHHHHHHHHHhhH-H--HHHHHHHHcCCCHHHhhHHhhcccCCccHHH
Confidence 44556688899999999998877763 3444332 1 2223334569999999988887766555443
No 137
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=91.95 E-value=0.42 Score=55.09 Aligned_cols=129 Identities=18% Similarity=0.155 Sum_probs=78.6
Q ss_pred cccccCCCccHHHHHHHHHhCC--CCeEEecCCchHHHhhhhC--------CCC-EEEecCCCHHHHhhcCccccCEEEE
Q 001051 1011 HIILCGFGRVGQIIAQLLSERL--IPFVALDVRSDRVAIGRAL--------DLP-VYFGDAGSREVLHKVGAERACAAAI 1079 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~g--i~VvVID~D~e~ve~l~~~--------g~~-vi~GDasd~e~Le~agI~~A~~VVi 1079 (1173)
.+.|+|.|.+|..++..|...| .+++++|++++..+..... +.. .+.+ .+.+ .+.++|.||+
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~--~~~~-----~l~~aDIVIi 74 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKA--GDYS-----DCKDADIVVI 74 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEc--CCHH-----HhCCCCEEEE
Confidence 5789999999999999999988 5799999999886544221 222 1222 2222 2478999999
Q ss_pred ecCCCc-----------chHH----HHHHHHhhCCCceEEEEecChh--hHHHHHHC-CC--CeeecC-CcHHHHHHHHH
Q 001051 1080 TLDTPG-----------ANYR----TVWALSKYFPNVKTFVRAHDID--HGLNLEKA-GA--TAVVPE-TLEPSLQLAAA 1138 (1173)
Q Consensus 1080 ~t~Dd~-----------~Ni~----iv~~ar~l~p~~~IIara~d~e--~~~~L~~a-GA--d~VI~p-~~~aa~~LA~~ 1138 (1173)
+++.+. .|.. ++..+++..|+..+++-+ +|. ....+.+. |. .+|+-. +.+=..++...
T Consensus 75 tag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs-NP~d~~~~~~~~~~g~p~~~v~g~gt~LDs~R~~~~ 153 (306)
T cd05291 75 TAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS-NPVDVITYVVQKLSGLPKNRVIGTGTSLDTARLRRA 153 (306)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec-ChHHHHHHHHHHHhCcCHHHEeeccchHHHHHHHHH
Confidence 998752 3433 455778888987555544 443 33333332 33 345533 33334455555
Q ss_pred HHHhcCCCH
Q 001051 1139 VLAQAKLPA 1147 (1173)
Q Consensus 1139 vl~~l~~~~ 1147 (1173)
+-..++++.
T Consensus 154 la~~l~v~~ 162 (306)
T cd05291 154 LAEKLNVDP 162 (306)
T ss_pred HHHHHCCCc
Confidence 544444433
No 138
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=91.84 E-value=1 Score=49.54 Aligned_cols=83 Identities=14% Similarity=-0.001 Sum_probs=64.4
Q ss_pred ccccccCCCccHHHHHHHHHhCCCCeEEecCCc-hHHHhhhhC-CCCEEEecCCCHHHHhhcCccccCEEEEecCCCcch
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRS-DRVAIGRAL-DLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~-e~ve~l~~~-g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~N 1087 (1173)
+.++|+|+|.++..=++.|.+.|-.++|+-.+. +.+..+.+. +...+. +.-+++- +.++..|+++|+|++.|
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~-~~~~~~~-----~~~~~lviaAt~d~~ln 86 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIE-REFDAED-----LDDAFLVIAATDDEELN 86 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhh-cccChhh-----hcCceEEEEeCCCHHHH
Confidence 468999999999999999999999999998886 555555443 333333 3333333 33499999999999999
Q ss_pred HHHHHHHHhhC
Q 001051 1088 YRTVWALSKYF 1098 (1173)
Q Consensus 1088 i~iv~~ar~l~ 1098 (1173)
-.+...+++.+
T Consensus 87 ~~i~~~a~~~~ 97 (210)
T COG1648 87 ERIAKAARERR 97 (210)
T ss_pred HHHHHHHHHhC
Confidence 99999999864
No 139
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=91.84 E-value=0.23 Score=50.31 Aligned_cols=105 Identities=20% Similarity=0.178 Sum_probs=58.3
Q ss_pred ccccccccCCCccHHHHHHHHHhCCCCeEEecCC-chHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcc
Q 001051 1008 LQDHIILCGFGRVGQIIAQLLSERLIPFVALDVR-SDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1173)
Q Consensus 1008 lk~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D-~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~ 1086 (1173)
.+-++-|+|.|++|..+++.|.+.|++++.+-.. ++..+++...- ++.. ...+.+. +.++|.++++++||..
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~-----~~~~-~~~~~~~-~~~aDlv~iavpDdaI 81 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFI-----GAGA-ILDLEEI-LRDADLVFIAVPDDAI 81 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC-------TT------TTGG-GCC-SEEEE-S-CCHH
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCccccccccccc-----cccc-ccccccc-cccCCEEEEEechHHH
Confidence 3457889999999999999999999999888655 44555554431 1111 1112222 4689999999999842
Q ss_pred hHHHHHHHHhh---CCCceEEEEecChhhHHH---HHHCCC
Q 001051 1087 NYRTVWALSKY---FPNVKTFVRAHDIDHGLN---LEKAGA 1121 (1173)
Q Consensus 1087 Ni~iv~~ar~l---~p~~~IIara~d~e~~~~---L~~aGA 1121 (1173)
. .++..+... .|+ ++++++.-.-..+. +++.|+
T Consensus 82 ~-~va~~La~~~~~~~g-~iVvHtSGa~~~~vL~p~~~~Ga 120 (127)
T PF10727_consen 82 A-EVAEQLAQYGAWRPG-QIVVHTSGALGSDVLAPARERGA 120 (127)
T ss_dssp H-HHHHHHHCC--S-TT--EEEES-SS--GGGGHHHHHTT-
T ss_pred H-HHHHHHHHhccCCCC-cEEEECCCCChHHhhhhHHHCCC
Confidence 2 233333333 244 79998886544444 455565
No 140
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=91.79 E-value=1.1 Score=51.21 Aligned_cols=108 Identities=15% Similarity=0.108 Sum_probs=70.2
Q ss_pred cccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchHHH
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRT 1090 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni~i 1090 (1173)
++-|+|.|.+|..+++.|.+.|++|++.|+++++.+.+.+.|..+. .+.+ ++ ++++|.|+++++++...-.+
T Consensus 4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~----~~~~---e~-~~~~d~vi~~vp~~~~~~~v 75 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETA----STAK---AV-AEQCDVIITMLPNSPHVKEV 75 (296)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeec----CCHH---HH-HhcCCEEEEeCCCHHHHHHH
Confidence 5788999999999999999999999999999999888877665321 1222 11 25789999999876432222
Q ss_pred HH----HHHhhCCCceEEEEec--Chh----hHHHHHHCCCCeeecC
Q 001051 1091 VW----ALSKYFPNVKTFVRAH--DID----HGLNLEKAGATAVVPE 1127 (1173)
Q Consensus 1091 v~----~ar~l~p~~~IIara~--d~e----~~~~L~~aGAd~VI~p 1127 (1173)
.. ......++ .+++-.. ++. ..+.+.+.|+..+-.|
T Consensus 76 ~~~~~~~~~~~~~g-~iiid~st~~~~~~~~l~~~~~~~g~~~~d~p 121 (296)
T PRK11559 76 ALGENGIIEGAKPG-TVVIDMSSIAPLASREIAAALKAKGIEMLDAP 121 (296)
T ss_pred HcCcchHhhcCCCC-cEEEECCCCCHHHHHHHHHHHHHcCCcEEEcC
Confidence 21 22333444 4555433 232 2334455677755555
No 141
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=91.70 E-value=0.38 Score=57.82 Aligned_cols=67 Identities=16% Similarity=0.106 Sum_probs=54.7
Q ss_pred cccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCC
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd 1084 (1173)
.+.++|+|+|.+|..+++.++..|.+|+++|.|+.+.+.++..|..++.- ++. +..+|.|+.+++..
T Consensus 202 GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~----~e~-----v~~aDVVI~atG~~ 268 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTM----EEA-----VKEGDIFVTTTGNK 268 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccH----HHH-----HcCCCEEEECCCCH
Confidence 45799999999999999999999999999999999998888888765421 122 24678988888764
No 142
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=91.65 E-value=0.38 Score=54.61 Aligned_cols=68 Identities=12% Similarity=0.003 Sum_probs=52.7
Q ss_pred cccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCc
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~ 1085 (1173)
++.|+|.|.+|..++..|.+.|++|+++|++++..+.+.+.|.-.. ..++.+ .+.++|.||++++.+.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~--~~~~~~-----~~~~aDlVilavp~~~ 69 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDE--ASTDLS-----LLKDCDLVILALPIGL 69 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCccc--ccCCHh-----HhcCCCEEEEcCCHHH
Confidence 3678999999999999999999999999999999988877764211 111211 2468999999998763
No 143
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=91.65 E-value=2.4 Score=44.46 Aligned_cols=106 Identities=21% Similarity=0.275 Sum_probs=66.9
Q ss_pred HHHHHHHHHhhccccc-cccc---CchhHHHHHHHHHHHHHHHHhhcCChhHHHhchh----hHHHHHHHHHHHHHHHHH
Q 001051 629 VLGYLAAGILIGPYGL-SIIR---HVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKK----YVFGLGSAQVLVTAVVVG 700 (1173)
Q Consensus 629 IvG~LLaGILLGP~gL-gli~---~~~~~~~LaeLGL~~LLF~aGLEldl~~Lrr~~k----~il~La~~~vllt~~~vg 700 (1173)
..|-+++|+++|..+- |.+. +......+.++|+.++++.+|++--..-+....+ ..+.++.+-++++.+++.
T Consensus 24 ~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~~ 103 (154)
T TIGR01625 24 AGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLVA 103 (154)
T ss_pred cHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 5688999999987531 1111 2345678999999999999999987765554333 233333444444555566
Q ss_pred HHHHHHhCCChHHHHHHhhc-cccCcHHHHHHHHHhc
Q 001051 701 LVAHFVSGLPGPASIVIGNG-LALSSTAVVLQVLQER 736 (1173)
Q Consensus 701 ll~~~llGls~~~ALlLGai-LS~TSpaVVv~vL~el 736 (1173)
++.++++++++.. ..|.+ =+.|+|+..-......
T Consensus 104 ~~~~~~~~~~~~~--~~G~~aGa~T~tpaL~aa~~~~ 138 (154)
T TIGR01625 104 VALIKLLRINYAL--TAGMLAGATTNTPALDAANDTL 138 (154)
T ss_pred HHHHHHhCCCHHH--HHHHHhccccChHHHHHHHHHh
Confidence 6777788888753 33332 4557777665555433
No 144
>PRK03818 putative transporter; Validated
Probab=91.64 E-value=5 Score=50.32 Aligned_cols=128 Identities=19% Similarity=0.236 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCch------HHHHHHHHHhhccccc-cccc---CchhHHHHHHHHHHHHHHHHhhcCC
Q 001051 604 FDVLWLLLASVIFVPIFQKIPGGSP------VLGYLAAGILIGPYGL-SIIR---HVHGTKAIAEFGVVFLLFNIGLELS 673 (1173)
Q Consensus 604 l~l~lLLl~A~ilg~L~~Rl~~lP~------IvG~LLaGILLGP~gL-gli~---~~~~~~~LaeLGL~~LLF~aGLEld 673 (1173)
..+.+.++++.++|.+--+++++|- .-|-+++|+++|..+- +.+. +......+.++|+.+++..+|++--
T Consensus 372 ~~l~l~I~lg~llG~i~~~i~g~~~~~~LG~~~G~L~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vGl~aG 451 (552)
T PRK03818 372 LPVFIGIGLGVLLGSIPFFIPGFPAALKLGLAGGPLIVALILGRIGSIGKLYWFMPPSANLALRELGIVLFLAVVGLKSG 451 (552)
T ss_pred HHHHHHHHHHHhhceeeEecCCCccceeeecchHHHHHHHHHHhccCCCCceeecCHHHHHHHHHHhHHHHHHHHHhhhh
Confidence 4455566666777766555555543 3579999999997542 1111 2233578999999999999999887
Q ss_pred hhHHHh----chhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHh-hccccCcHHHHHHHH
Q 001051 674 VERLSS----MKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIG-NGLALSSTAVVLQVL 733 (1173)
Q Consensus 674 l~~Lrr----~~k~il~La~~~vllt~~~vgll~~~llGls~~~ALlLG-aiLS~TSpaVVv~vL 733 (1173)
..-+.. .+...+.++.+-.+++.++..++.++++++++. ..+| .+=+.|+|+....+.
T Consensus 452 ~~f~~~~~~~~G~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~--~~~G~~aG~~t~tp~l~~a~ 514 (552)
T PRK03818 452 GDFVDTLVNGEGLSWIGYGFLITAVPLLIVGILARMLAKMNYL--TLCGMLAGSMTDPPALAFAN 514 (552)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH--HHHHHHhccCCCcHHHHHHh
Confidence 665543 344455555555555555555555788899876 3444 334567777665554
No 145
>COG2985 Predicted permease [General function prediction only]
Probab=91.55 E-value=3 Score=50.45 Aligned_cols=124 Identities=21% Similarity=0.326 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhcCC-C-----chHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcCChhH---HHhc
Q 001051 610 LLASVIFVPIFQKIPG-G-----SPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVER---LSSM 680 (1173)
Q Consensus 610 Ll~A~ilg~L~~Rl~~-l-----P~IvG~LLaGILLGP~gLgli~~~~~~~~LaeLGL~~LLF~aGLEldl~~---Lrr~ 680 (1173)
+++...++..+.|+ | + -...|-+++|..++.+++.+..+ .+.+ ++|++++.+.+|++.-+.. +++.
T Consensus 13 Lvvvl~lgl~~gkI-r~fG~gigg~l~g~L~Vgl~l~~~~~~i~~~--~l~f--~lGL~LFVy~iGl~aGP~FFss~~~~ 87 (544)
T COG2985 13 LFVVLALGLGFGKI-RGFGLGIGGVLFGVLFVGLFLGQYGFTINTD--MLHF--ELGLILFVYTIGLEAGPGFFSSFRKS 87 (544)
T ss_pred HHHHHHHHhhhcee-EEeccccccchhhHhHHHHHhcccccccccc--hhhh--hhhhhHhhhhhhheecccHhHHHHHh
Confidence 33344455556665 3 1 12345566666666655544222 2222 9999999999999987764 4555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhCCChH--HHHHHhhccccCcHHHHHHHHHhcCCC
Q 001051 681 KKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGP--ASIVIGNGLALSSTAVVLQVLQERGES 739 (1173)
Q Consensus 681 ~k~il~La~~~vllt~~~vgll~~~llGls~~--~ALlLGaiLS~TSpaVVv~vL~elg~l 739 (1173)
+++...++++- +++...++++.+.+++++.. ...+-|+.-+....+.+..++++.+..
T Consensus 88 Gl~~~~~alli-vi~~~~~a~~l~k~~~~~~~~~~Gm~sGAlTsTP~L~aa~~~L~~lg~~ 147 (544)
T COG2985 88 GLNLNAFALLI-VIAALLLAWVLHKLFGIDLGLIAGMFSGALTSTPGLGAAQDILRELGAP 147 (544)
T ss_pred hhHHHHHHHHH-HHHHHHHHHHHHhhcCCCHHHhhhhhcccccCCchhHHHHHHHHhhccc
Confidence 55555555544 33444566667777787754 344445543333345677788888764
No 146
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.50 E-value=0.36 Score=58.27 Aligned_cols=74 Identities=15% Similarity=0.194 Sum_probs=59.4
Q ss_pred ccccccCCCccHHHHHHHHHhCCCCeEEecCCc-hHH----HhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCC
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRS-DRV----AIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~-e~v----e~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd 1084 (1173)
+.++|+|.|..|..+++.|.++|++|+++|.++ +.+ +++...|..++.+|..+. ...++|.||.+++..
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------~~~~~d~vv~~~g~~ 79 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEE------FLEGVDLVVVSPGVP 79 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchh------HhhcCCEEEECCCCC
Confidence 568899999999999999999999999999985 333 455566888999998872 235789999988876
Q ss_pred cchHH
Q 001051 1085 GANYR 1089 (1173)
Q Consensus 1085 ~~Ni~ 1089 (1173)
..|-.
T Consensus 80 ~~~~~ 84 (450)
T PRK14106 80 LDSPP 84 (450)
T ss_pred CCCHH
Confidence 55553
No 147
>PRK04972 putative transporter; Provisional
Probab=91.36 E-value=3.6 Score=51.64 Aligned_cols=132 Identities=17% Similarity=0.191 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCch----HHHHHHHHHhhcccc-ccccc---CchhHHHHHHHHHHHHHHHHhhcCCh
Q 001051 603 LFDVLWLLLASVIFVPIFQKIPGGSP----VLGYLAAGILIGPYG-LSIIR---HVHGTKAIAEFGVVFLLFNIGLELSV 674 (1173)
Q Consensus 603 Ll~l~lLLl~A~ilg~L~~Rl~~lP~----IvG~LLaGILLGP~g-Lgli~---~~~~~~~LaeLGL~~LLF~aGLEldl 674 (1173)
++.+++-+++++++|.+--+++++|- --|-+++|+++|... .+... +.....++.++|+.+++..+|++--.
T Consensus 383 ~~~~~~Gi~lG~llG~i~i~~~g~~~~LG~agG~L~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vGl~aG~ 462 (558)
T PRK04972 383 LLAFCAFFIIGLMIGMITFQFSNFSFGIGNAAGLLFAGIMLGFLRANHPTFGYIPQGALNMVKEFGLMVFMAGVGLSAGS 462 (558)
T ss_pred HHHHHHHHHHHHHHcceeEeeCCeeeeccccHHHHHHHHHHHhccccCCCceeeCHHHHHHHHHHhHHHHHHHHHHhhhH
Confidence 35556666667777766666544432 348999999999732 11111 22334689999999999999998765
Q ss_pred hH---HHhchhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHh-hccccCcHHHHHHHHHhc
Q 001051 675 ER---LSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIG-NGLALSSTAVVLQVLQER 736 (1173)
Q Consensus 675 ~~---Lrr~~k~il~La~~~vllt~~~vgll~~~llGls~~~ALlLG-aiLS~TSpaVVv~vL~el 736 (1173)
.- +++.+...+.++.+-.+++.++..++.++++++++. .++| .+=+.|+|+....+....
T Consensus 463 ~f~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~~k~~~~--~~~G~~aG~~t~~~~l~~~~~~~ 526 (558)
T PRK04972 463 GINNGLGAVGGQMLIAGLIVSLVPVVICFLFGAYVLRMNRA--LLFGAIMGARTCAPAMEIISDTA 526 (558)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH--HHHHHHhCCCCCcHHHHHHHhhc
Confidence 43 444555666666666666766667777788999887 3444 334567777666555443
No 148
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=91.27 E-value=17 Score=50.45 Aligned_cols=122 Identities=17% Similarity=0.157 Sum_probs=60.3
Q ss_pred ceeecCCCcc----ccccCCCCCccccccchhhhcccccCCCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001051 110 LAFIDGNGRN----VEFSENGDGPEANSLGEEERETKEDAEPPTTDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAA 185 (1173)
Q Consensus 110 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~a~~~~~~~e~~~~~~~~~a 185 (1173)
=+||+.|||+ +.+. .....+.--|..-++.. -..-+++|.+-|..-..+++...-.....++..+++..-.
T Consensus 705 ~~~v~~dG~~r~G~l~G~--~~k~~a~~IG~~aR~~~---R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~ 779 (1353)
T TIGR02680 705 HTWIDVDGRFRLGVLRGA--WAKPAAEYIGAAARERA---RLRRIAELDARLAAVDDELAELARELRALGARQRALADEL 779 (1353)
T ss_pred CeeECCCCceeeeeeecc--cCCcchhHhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999993 3322 22444444444443211 1223677777777777777776666666666655555443
Q ss_pred Hhchh--HHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001051 186 IALKD--EAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLAEARLQVAIESLQD 243 (1173)
Q Consensus 186 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~ 243 (1173)
=++-+ ...-|+..+.. .-.+-..|.+.+..++-.+.-|+.+++.|...+..
T Consensus 780 ~~~Ps~~dL~~A~~~l~~-------A~~~~~~a~~~l~~a~~~l~~a~~~~~~a~~~l~~ 832 (1353)
T TIGR02680 780 AGAPSDRSLRAAHRRAAE-------AERQAESAERELARAARKAAAAAAAWKQARRELER 832 (1353)
T ss_pred HhCCCchHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333 22233333332 22222333344444444444444444444444443
No 149
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=91.26 E-value=0.63 Score=53.34 Aligned_cols=108 Identities=16% Similarity=0.133 Sum_probs=74.2
Q ss_pred cccccCCCccHHHHHHHHHhCCCCeEEecCCchH-HHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchHH
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDR-VAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYR 1089 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~-ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni~ 1089 (1173)
++-++|.|..|..++..|.+.|+++++.|++++. .+.++..|..+. .++ .--+..+|.||++.+|+..-..
T Consensus 2 kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a----~s~----~eaa~~aDvVitmv~~~~~V~~ 73 (286)
T COG2084 2 KIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVA----ASP----AEAAAEADVVITMLPDDAAVRA 73 (286)
T ss_pred eEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCccc----CCH----HHHHHhCCEEEEecCCHHHHHH
Confidence 3567999999999999999999999999999998 777777776443 222 1234578999999998854333
Q ss_pred HHH----HHHhhCCCceEEEEec--Ch----hhHHHHHHCCCCeeecC
Q 001051 1090 TVW----ALSKYFPNVKTFVRAH--DI----DHGLNLEKAGATAVVPE 1127 (1173)
Q Consensus 1090 iv~----~ar~l~p~~~IIara~--d~----e~~~~L~~aGAd~VI~p 1127 (1173)
+.. .+...-|. .+++-.. ++ +....+++.|.+.+--|
T Consensus 74 V~~g~~g~~~~~~~G-~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAP 120 (286)
T COG2084 74 VLFGENGLLEGLKPG-AIVIDMSTISPETARELAAALAAKGLEFLDAP 120 (286)
T ss_pred HHhCccchhhcCCCC-CEEEECCCCCHHHHHHHHHHHHhcCCcEEecC
Confidence 332 23333344 3443333 33 45556677888877655
No 150
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=91.20 E-value=9.8 Score=46.17 Aligned_cols=56 Identities=18% Similarity=0.165 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 001051 176 EKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLAEARLQVAIESLQDVKQ 246 (1173)
Q Consensus 176 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 246 (1173)
+.||+|++.-+ +++..-=|++| +-.+++++.-|..-+.-||.|++.|.++|.+-+.
T Consensus 215 edA~~ia~aLL---~~sE~~VN~Ls------------~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn 270 (434)
T PRK15178 215 KQAEFFAQRIL---SFAEQHVNTVS------------ARMQKERILWLENDVKSAQENLGAARLELLKIQH 270 (434)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888888744 45555555555 4557788888999999999999999999988653
No 151
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=91.20 E-value=14 Score=49.83 Aligned_cols=47 Identities=23% Similarity=0.311 Sum_probs=25.6
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 001051 269 LLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKA 315 (1173)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~~~~ 315 (1173)
.+...++++...+..+.+++.++..++.++.++++++.++++..+..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l 341 (1164)
T TIGR02169 295 KIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEEL 341 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555666555555555555555555444433
No 152
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=91.02 E-value=1.1 Score=55.03 Aligned_cols=112 Identities=13% Similarity=0.058 Sum_probs=72.5
Q ss_pred cccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhC----CCCEEEecCCCH-HHHhhcCccccCEEEEecCCCc
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL----DLPVYFGDAGSR-EVLHKVGAERACAAAITLDTPG 1085 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~----g~~vi~GDasd~-e~Le~agI~~A~~VVi~t~Dd~ 1085 (1173)
++-++|.|.+|..+++.|.+.|++|++.|+++++++.+.+. |..+ .+ ..++ +.... +++++.|+++..+++
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i-~~-~~s~~e~v~~--l~~~d~Iil~v~~~~ 78 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRV-KG-YHTLEELVNS--LKKPRKVILLIKAGE 78 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcc-ee-cCCHHHHHhc--CCCCCEEEEEeCChH
Confidence 46789999999999999999999999999999999888654 4332 12 2233 22222 336888888876665
Q ss_pred chHHHHHHHH-hhCCCceEEEEecC------hhhHHHHHHCCCCeeecC
Q 001051 1086 ANYRTVWALS-KYFPNVKTFVRAHD------IDHGLNLEKAGATAVVPE 1127 (1173)
Q Consensus 1086 ~Ni~iv~~ar-~l~p~~~IIara~d------~e~~~~L~~aGAd~VI~p 1127 (1173)
.--.+...+. .+.++ .||+-..+ ....+.+.+.|+..+=.|
T Consensus 79 ~v~~vi~~l~~~L~~g-~iIID~gn~~~~dt~~r~~~l~~~Gi~fldap 126 (470)
T PTZ00142 79 AVDETIDNLLPLLEKG-DIIIDGGNEWYLNTERRIKRCEEKGILYLGMG 126 (470)
T ss_pred HHHHHHHHHHhhCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCeEEcCC
Confidence 4333333333 34454 45555443 234556666787765444
No 153
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=90.92 E-value=8.2 Score=46.00 Aligned_cols=104 Identities=15% Similarity=0.146 Sum_probs=79.5
Q ss_pred CCchHHHHHHHHHhhcccc--ccccc-CchhHHHHHHHHHHHHHHHHhhcCChhHHHhchhhHHHHHHHHHHHHHHHHHH
Q 001051 625 GGSPVLGYLAAGILIGPYG--LSIIR-HVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGL 701 (1173)
Q Consensus 625 ~lP~IvG~LLaGILLGP~g--Lgli~-~~~~~~~LaeLGL~~LLF~aGLEldl~~Lrr~~k~il~La~~~vllt~~~vgl 701 (1173)
.+|..++-+++|+++.... ++..+ +....+.+.++.+-+++..+=..+++..+.+..-+.+.+-+++++++.+...+
T Consensus 246 ~lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I~~~sL~~fl~~almsl~l~~l~~~a~Plliil~~q~i~~~~f~~f 325 (368)
T PF03616_consen 246 TLPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRISGISLDLFLAMALMSLKLWVLADYALPLLIILAVQTILMVLFAYF 325 (368)
T ss_pred CCchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999998642 12211 44567899999999999998899999999999999888888888887776666
Q ss_pred HHHHHhCCChHHHH----HHhhccccCcHHH
Q 001051 702 VAHFVSGLPGPASI----VIGNGLALSSTAV 728 (1173)
Q Consensus 702 l~~~llGls~~~AL----lLGaiLS~TSpaV 728 (1173)
+.+.++|-++..+. ..|..+.+|.+++
T Consensus 326 v~fr~~gkdydaavm~~G~~G~glGatp~a~ 356 (368)
T PF03616_consen 326 VTFRVMGKDYDAAVMSAGFCGFGLGATPNAM 356 (368)
T ss_pred HhhhhhCCChhHHHHhhhhhccCCCccHHHH
Confidence 66777888875544 4455566666654
No 154
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=90.91 E-value=0.45 Score=50.87 Aligned_cols=76 Identities=16% Similarity=0.038 Sum_probs=60.9
Q ss_pred ccccccCC-CccHHHHHHHHHhCCCCeEEecCCchHHHhhhh-----CCCCEEEecCCCHHHHhhcCccccCEEEEecCC
Q 001051 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-----LDLPVYFGDAGSREVLHKVGAERACAAAITLDT 1083 (1173)
Q Consensus 1010 ~hvIIiG~-G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~-----~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~D 1083 (1173)
.+++|+|. |.+|+.+++.|.+.|.+++++++++++.+.+.+ .+..+...|..+.+.+.++ +.++|.||.+++.
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~diVi~at~~ 107 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAA-IKGADVVFAAGAA 107 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHH-HhcCCEEEECCCC
Confidence 46888885 999999999999999999999999888765532 2567778888887776543 3578999999988
Q ss_pred Ccc
Q 001051 1084 PGA 1086 (1173)
Q Consensus 1084 d~~ 1086 (1173)
...
T Consensus 108 g~~ 110 (194)
T cd01078 108 GVE 110 (194)
T ss_pred Cce
Confidence 765
No 155
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=90.87 E-value=11 Score=51.50 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=12.9
Q ss_pred ccccccccccccccc----ccccCCCc
Q 001051 42 RIVSKTRSTRNLSKS----ISYAGCSK 64 (1173)
Q Consensus 42 ~~~~~~~~~~~~~~~----~~~~~~~~ 64 (1173)
+.|-.++|.|+|+-+ +-|.|+..
T Consensus 45 ~fVLG~~s~k~lRa~~~~DlIf~g~~~ 71 (1163)
T COG1196 45 RFVLGEQSAKNLRASKMSDLIFAGSGN 71 (1163)
T ss_pred HHHhCcchhhhhhccCCcceeeCCCCC
Confidence 345556667766543 35666555
No 156
>PRK06182 short chain dehydrogenase; Validated
Probab=90.86 E-value=0.37 Score=53.78 Aligned_cols=73 Identities=12% Similarity=0.065 Sum_probs=59.4
Q ss_pred ccccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcC------ccccCEEEEecC
Q 001051 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVG------AERACAAAITLD 1082 (1173)
Q Consensus 1010 ~hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~ag------I~~A~~VVi~t~ 1082 (1173)
+.++|.| .|.+|..+++.|.++|++|++++++++..+.+...+..++.+|.++++.++++- ....|.+|...+
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~~ag 83 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVNNAG 83 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 4567777 488999999999999999999999998887776678889999999999886542 135788776654
No 157
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.70 E-value=0.62 Score=53.96 Aligned_cols=100 Identities=15% Similarity=0.113 Sum_probs=65.3
Q ss_pred ccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCE--EEecCCC-----HHHHhhcCccccCEEEEecCCC
Q 001051 1012 IILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPV--YFGDAGS-----REVLHKVGAERACAAAITLDTP 1084 (1173)
Q Consensus 1012 vIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~v--i~GDasd-----~e~Le~agI~~A~~VVi~t~Dd 1084 (1173)
+.|+|.|.+|..++..|.+.|++|.+++++++.++.+++.+.+. ..|.... ...+.++-...+|.+++++++.
T Consensus 3 I~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavks~ 82 (326)
T PRK14620 3 ISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVPTQ 82 (326)
T ss_pred EEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeCHH
Confidence 77999999999999999999999999999999888776643222 1121110 0111121114789999999887
Q ss_pred cchHHHHHHHH--hhCCCceEEEEecChhh
Q 001051 1085 GANYRTVWALS--KYFPNVKTFVRAHDIDH 1112 (1173)
Q Consensus 1085 ~~Ni~iv~~ar--~l~p~~~IIara~d~e~ 1112 (1173)
...- +...++ ...++..++..++.-++
T Consensus 83 ~~~~-~l~~l~~~~l~~~~~vv~~~nGi~~ 111 (326)
T PRK14620 83 QLRT-ICQQLQDCHLKKNTPILICSKGIEK 111 (326)
T ss_pred HHHH-HHHHHHHhcCCCCCEEEEEEcCeeC
Confidence 4332 333333 33456667777776644
No 158
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.68 E-value=0.38 Score=54.79 Aligned_cols=74 Identities=14% Similarity=0.113 Sum_probs=51.8
Q ss_pred cccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCC-----CCEEEecCCCH------------HHHhhcCccc
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALD-----LPVYFGDAGSR------------EVLHKVGAER 1073 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g-----~~vi~GDasd~------------e~Le~agI~~ 1073 (1173)
++.|+|.|.+|..++..|.+.|++|+++|.|++.++++.+.- ..+-.|..+.. ..+. ..+.+
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~~ 81 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLK-AAVAD 81 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHH-HhhcC
Confidence 578999999999999999999999999999999988764310 00001111111 1111 23578
Q ss_pred cCEEEEecCCCc
Q 001051 1074 ACAAAITLDTPG 1085 (1173)
Q Consensus 1074 A~~VVi~t~Dd~ 1085 (1173)
+|.|+.+++++.
T Consensus 82 aD~Vi~avpe~~ 93 (288)
T PRK09260 82 ADLVIEAVPEKL 93 (288)
T ss_pred CCEEEEeccCCH
Confidence 999999998874
No 159
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=90.67 E-value=0.95 Score=51.96 Aligned_cols=106 Identities=11% Similarity=0.046 Sum_probs=70.0
Q ss_pred ccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchHHHH
Q 001051 1012 IILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTV 1091 (1173)
Q Consensus 1012 vIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni~iv 1091 (1173)
+-++|.|.+|..+++.|.+.|+++++.|+++. .+.+.+.|.... .++..+ .++++.|+++++|+..-..+.
T Consensus 3 Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~----~s~~~~----~~~advVi~~v~~~~~v~~v~ 73 (292)
T PRK15059 3 LGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSV----ETARQV----TEASDIIFIMVPDTPQVEEVL 73 (292)
T ss_pred EEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeec----CCHHHH----HhcCCEEEEeCCChHHHHHHH
Confidence 66899999999999999999999999999875 466655564322 222221 357899999999884322222
Q ss_pred H----HHHhhCCCceEEEEecC--hh----hHHHHHHCCCCeeecC
Q 001051 1092 W----ALSKYFPNVKTFVRAHD--ID----HGLNLEKAGATAVVPE 1127 (1173)
Q Consensus 1092 ~----~ar~l~p~~~IIara~d--~e----~~~~L~~aGAd~VI~p 1127 (1173)
. .+....|+ ++++-..+ ++ ..+.+.+.|+..+-.|
T Consensus 74 ~~~~g~~~~~~~g-~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaP 118 (292)
T PRK15059 74 FGENGCTKASLKG-KTIVDMSSISPIETKRFARQVNELGGDYLDAP 118 (292)
T ss_pred cCCcchhccCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 1 12223343 45555543 33 3466677899877766
No 160
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=90.39 E-value=25 Score=44.96 Aligned_cols=55 Identities=20% Similarity=0.174 Sum_probs=45.9
Q ss_pred CCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 001051 261 SDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKA 315 (1173)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~~~~ 315 (1173)
++..+-.+.+..++.++.+|++.+.+++.++.+++.+++++++++.++.+.-++.
T Consensus 421 e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 475 (650)
T TIGR03185 421 EQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQKINA 475 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566667788889999999999999999999999999999999998886665543
No 161
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=90.35 E-value=1.5 Score=50.40 Aligned_cols=108 Identities=13% Similarity=0.067 Sum_probs=70.3
Q ss_pred cccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchHHH
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRT 1090 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni~i 1090 (1173)
++-++|.|.+|..++..|.+.|++|++.|+++++.+.+.+.|.... .++. ++ ++++|.|+++++++..--.+
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~----~s~~---~~-~~~aDvVi~~vp~~~~~~~v 74 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPA----ASPA---QA-AAGAEFVITMLPNGDLVRSV 74 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCccc----CCHH---HH-HhcCCEEEEecCCHHHHHHH
Confidence 4678999999999999999999999999999999998877764321 1221 11 35688999999887422222
Q ss_pred HH----HHHhhCCCceEEEEecC--hhh----HHHHHHCCCCeeecC
Q 001051 1091 VW----ALSKYFPNVKTFVRAHD--IDH----GLNLEKAGATAVVPE 1127 (1173)
Q Consensus 1091 v~----~ar~l~p~~~IIara~d--~e~----~~~L~~aGAd~VI~p 1127 (1173)
.. ..+...++ .+++...+ +.. .+.+.+.|+..+=-|
T Consensus 75 l~~~~~i~~~l~~g-~lvid~sT~~p~~~~~l~~~l~~~g~~~ldap 120 (296)
T PRK15461 75 LFGENGVCEGLSRD-ALVIDMSTIHPLQTDKLIADMQAKGFSMMDVP 120 (296)
T ss_pred HcCcccHhhcCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCcEEEcc
Confidence 11 12222333 34444433 333 355677787765444
No 162
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.26 E-value=17 Score=48.37 Aligned_cols=46 Identities=17% Similarity=0.213 Sum_probs=31.4
Q ss_pred HHHhhcCChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhCCCh
Q 001051 666 FNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPG 711 (1173)
Q Consensus 666 F~aGLEldl~~Lrr~~k~il~La~~~vllt~~~vgll~~~llGls~ 711 (1173)
|.-|..++++--+++|+.+.-|+...=.++.+++-|++|.+-+.|+
T Consensus 1175 FseGV~FSVrPpKKSWK~I~NLSGGEKTLSSLALVFALH~YkPTPl 1220 (1293)
T KOG0996|consen 1175 FSEGVMFSVRPPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPL 1220 (1293)
T ss_pred cccCceEEeeCchhhhhhcccCCcchhHHHHHHHHHHHHccCCCCc
Confidence 5567788888888899888777666555555555566676644444
No 163
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=90.21 E-value=14 Score=41.92 Aligned_cols=103 Identities=24% Similarity=0.242 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchh-------HHHHHHHhhhHhHHHHHHHHhHH------------H
Q 001051 154 RELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKD-------EAANAWNNVNVTLDMVHEIVNEE------------C 214 (1173)
Q Consensus 154 ~~~l~~~~~~~e~a~~~~~~~e~~~~~~~~~a~~~~~-------~~~~~~~~~~~~~~~~~~~~~~e------------~ 214 (1173)
+..++...++++.-.---.-+.+|++++++.+-.+++ +|..--.+|....+.|++++++= .
T Consensus 44 ~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~ 123 (264)
T PF06008_consen 44 KQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSE 123 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHH
Confidence 3333333333333333333444555555555555555 44444445555666666665432 1
Q ss_pred HHHHHHHHHHHHH------------HHHHHHHHHHHHHhhhhccCCCCCCCCcc
Q 001051 215 IAKEAVHKATMAL------------SLAEARLQVAIESLQDVKQEDDYPEGSTE 256 (1173)
Q Consensus 215 ~a~~~~~~~~~~~------------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (1173)
.-.++...|.++| ..|+..+.-|.+-|...+....+|...++
T Consensus 124 ~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~ 177 (264)
T PF06008_consen 124 DLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENE 177 (264)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhH
Confidence 1223344444444 35777777777777777666666665443
No 164
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=90.20 E-value=7.1 Score=46.43 Aligned_cols=120 Identities=18% Similarity=0.184 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHh-cCCCchHHHHHHHHHhhcccc--ccccc-CchhHHHHHHHHHHHHHHHHhhcCChhHHHhchhhHH
Q 001051 610 LLASVIFVPIFQK-IPGGSPVLGYLAAGILIGPYG--LSIIR-HVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVF 685 (1173)
Q Consensus 610 Ll~A~ilg~L~~R-l~~lP~IvG~LLaGILLGP~g--Lgli~-~~~~~~~LaeLGL~~LLF~aGLEldl~~Lrr~~k~il 685 (1173)
+.++.....+.+. -..+|..++.+++|+++.+.. ++..+ +.+..+.++++++.+++=.+=+++.+-.+-+.+-+.+
T Consensus 231 ~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~l~lpl~ 310 (404)
T COG0786 231 LAVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELADLALPLL 310 (404)
T ss_pred HHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccccHH
Confidence 3344444444442 226899999999999998641 12111 3455688899998888877778888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHHH----HhhccccCcHHHH
Q 001051 686 GLGSAQVLVTAVVVGLVAHFVSGLPGPASIV----IGNGLALSSTAVV 729 (1173)
Q Consensus 686 ~La~~~vllt~~~vgll~~~llGls~~~ALl----LGaiLS~TSpaVV 729 (1173)
.+-.+++++..+...++++.++|-++-.+.+ .|..+.+|.++++
T Consensus 311 viL~vQ~i~m~lfa~fvtfr~mG~~YdAaV~~~G~~G~gLGATPtAia 358 (404)
T COG0786 311 VILAVQTIVMALFAIFVTFRLMGKNYDAAVLAAGHCGFGLGATPTAIA 358 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcchhHHHHhcccccCccCCcHHHHH
Confidence 8888888877766666777788888776655 4566666666653
No 165
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.14 E-value=1.1 Score=51.55 Aligned_cols=103 Identities=13% Similarity=0.045 Sum_probs=62.4
Q ss_pred cccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhh-----------hCCCCE------EEecCCCHHHHhhcCccc
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGR-----------ALDLPV------YFGDAGSREVLHKVGAER 1073 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~-----------~~g~~v------i~GDasd~e~Le~agI~~ 1073 (1173)
++.|+|.|.+|..++..|.+.|++|+++|++++..+..+ +.|..- ..+...-...+.++ +++
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a-~~~ 82 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADA-VAD 82 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHh-hCC
Confidence 588999999999999999999999999999998776532 333210 00000000112211 457
Q ss_pred cCEEEEecCCCc-chHHHHHHHHhhCCCceEEEEecChhhHH
Q 001051 1074 ACAAAITLDTPG-ANYRTVWALSKYFPNVKTFVRAHDIDHGL 1114 (1173)
Q Consensus 1074 A~~VVi~t~Dd~-~Ni~iv~~ar~l~p~~~IIara~d~e~~~ 1114 (1173)
++.|+.+++++. .+..+...+++..++-.+++.........
T Consensus 83 ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~ 124 (308)
T PRK06129 83 ADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLAS 124 (308)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHH
Confidence 999999998873 33334444555555434554444333333
No 166
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=90.12 E-value=12 Score=50.97 Aligned_cols=61 Identities=23% Similarity=0.335 Sum_probs=40.6
Q ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 001051 268 GLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVAN 328 (1173)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~a~~~~~~ 328 (1173)
+....+++++..++.++.+|+.+++.++.+.+++++++..++..-.+.+......++....
T Consensus 835 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~ 895 (1163)
T COG1196 835 EEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRE 895 (1163)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666777777777777777777777777777777777766666555554444433
No 167
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=90.06 E-value=0.65 Score=55.72 Aligned_cols=74 Identities=23% Similarity=0.290 Sum_probs=51.8
Q ss_pred cccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEE-------------EecCCCHHHHhhcCccccCEE
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVY-------------FGDAGSREVLHKVGAERACAA 1077 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi-------------~GDasd~e~Le~agI~~A~~V 1077 (1173)
++.|+|.|.+|..++..|.+.|++|+++|.|+++++.+.....++. .|...-.....+ -+++++.+
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~-~~~~advv 80 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYED-AIRDADVI 80 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHH-HHhhCCEE
Confidence 3678999999999999999999999999999999988764322211 010000001111 14578999
Q ss_pred EEecCCCc
Q 001051 1078 AITLDTPG 1085 (1173)
Q Consensus 1078 Vi~t~Dd~ 1085 (1173)
+++++++.
T Consensus 81 ii~vpt~~ 88 (411)
T TIGR03026 81 IICVPTPL 88 (411)
T ss_pred EEEeCCCC
Confidence 99998874
No 168
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=90.05 E-value=0.15 Score=61.35 Aligned_cols=68 Identities=12% Similarity=0.105 Sum_probs=56.7
Q ss_pred cccccccCCCccHHHHHHHHHhCCCCeE------EecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecC
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLIPFV------ALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLD 1082 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi~Vv------VID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~ 1082 (1173)
.+.++|+|+|..|..-+..|+..|++|+ +||.+++..+.+.+.|+.+ ++ +.++ +.+||.|+++++
T Consensus 36 gKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v--~~------~~Ea-~~~ADvVviLlP 106 (487)
T PRK05225 36 GKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV--GT------YEEL-IPQADLVINLTP 106 (487)
T ss_pred CCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc--CC------HHHH-HHhCCEEEEcCC
Confidence 3568899999999999999999999999 8999999988888888854 22 3333 778999999999
Q ss_pred CCc
Q 001051 1083 TPG 1085 (1173)
Q Consensus 1083 Dd~ 1085 (1173)
|..
T Consensus 107 Dt~ 109 (487)
T PRK05225 107 DKQ 109 (487)
T ss_pred hHH
Confidence 985
No 169
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=90.04 E-value=1.3 Score=49.17 Aligned_cols=109 Identities=17% Similarity=0.094 Sum_probs=73.9
Q ss_pred cccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchHHHHH
Q 001051 1013 ILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTVW 1092 (1173)
Q Consensus 1013 IIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni~iv~ 1092 (1173)
=.+|.|+.|..++++|.+.|++|++.|.|++.++.+.+.| ..|-.+-.+.+.+++..++-.+.+.-.|... ..+-.
T Consensus 4 GmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~g---a~~a~sl~el~~~L~~pr~vWlMvPag~it~-~vi~~ 79 (300)
T COG1023 4 GMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEG---ATGAASLDELVAKLSAPRIVWLMVPAGDITD-AVIDD 79 (300)
T ss_pred eeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcC---CccccCHHHHHHhcCCCcEEEEEccCCCchH-HHHHH
Confidence 3589999999999999999999999999999999999887 3333444677788887766666665555533 33333
Q ss_pred HHHhhCCCceEEEEecC---hh---hHHHHHHCCCCeeec
Q 001051 1093 ALSKYFPNVKTFVRAHD---ID---HGLNLEKAGATAVVP 1126 (1173)
Q Consensus 1093 ~ar~l~p~~~IIara~d---~e---~~~~L~~aGAd~VI~ 1126 (1173)
.+-.+.+. .+|.---+ .+ ..+.|++.|+..+-.
T Consensus 80 la~~L~~G-DivIDGGNS~y~Ds~rr~~~l~~kgi~flD~ 118 (300)
T COG1023 80 LAPLLSAG-DIVIDGGNSNYKDSLRRAKLLAEKGIHFLDV 118 (300)
T ss_pred HHhhcCCC-CEEEECCccchHHHHHHHHHHHhcCCeEEec
Confidence 33334443 45554333 22 333467777776543
No 170
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=89.96 E-value=0.98 Score=53.07 Aligned_cols=88 Identities=16% Similarity=0.188 Sum_probs=65.3
Q ss_pred cccccccCCCccHHHHHHHHHhCCC-CeEEecCCc---------------------hHH----HhhhhCC----CCEEEe
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLI-PFVALDVRS---------------------DRV----AIGRALD----LPVYFG 1058 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi-~VvVID~D~---------------------e~v----e~l~~~g----~~vi~G 1058 (1173)
+.+|+|+|.|.+|..++..|...|+ .+++||.|. .++ +++++.+ +..+..
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~~ 103 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIVQ 103 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEec
Confidence 4579999999999999999999998 899999984 111 2223222 334556
Q ss_pred cCCCHHHHhhcCccccCEEEEecCCCcchHHHHHHHHhhC
Q 001051 1059 DAGSREVLHKVGAERACAAAITLDTPGANYRTVWALSKYF 1098 (1173)
Q Consensus 1059 Dasd~e~Le~agI~~A~~VVi~t~Dd~~Ni~iv~~ar~l~ 1098 (1173)
+.+..+ +.+. +.++|.||.++++.+.+..+...+++.+
T Consensus 104 ~~~~~~-~~~~-~~~~DlVid~~Dn~~~r~~ln~~~~~~~ 141 (339)
T PRK07688 104 DVTAEE-LEEL-VTGVDLIIDATDNFETRFIVNDAAQKYG 141 (339)
T ss_pred cCCHHH-HHHH-HcCCCEEEEcCCCHHHHHHHHHHHHHhC
Confidence 665444 3333 6789999999999988888888888765
No 171
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=89.90 E-value=0.39 Score=54.52 Aligned_cols=69 Identities=22% Similarity=0.187 Sum_probs=55.2
Q ss_pred ccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEec
Q 001051 1012 IILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITL 1081 (1173)
Q Consensus 1012 vIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t 1081 (1173)
++|.| .|.+|..+++.|.+.|++|++++++++......+.+..++.||.++++.+.++ ++.++.|+-+.
T Consensus 3 vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~-~~~~d~vi~~a 72 (328)
T TIGR03466 3 VLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKA-VAGCRALFHVA 72 (328)
T ss_pred EEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHH-HhCCCEEEEec
Confidence 56666 59999999999999999999999988765555555788999999999888764 34567766544
No 172
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=89.88 E-value=0.18 Score=52.97 Aligned_cols=66 Identities=15% Similarity=0.161 Sum_probs=49.4
Q ss_pred ccccccCCCccHHHHHHHHHhCCCCeEEecCCch-HHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCC
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSD-RVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e-~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd 1084 (1173)
+.+.|+|||..|..-+..|+..|.+|++-.+... ..+++++.|+.+. ...++ ++++|.|+++++|.
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~--------~~~eA-v~~aDvV~~L~PD~ 71 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVM--------SVAEA-VKKADVVMLLLPDE 71 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECC--------EHHHH-HHC-SEEEE-S-HH
T ss_pred CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeec--------cHHHH-HhhCCEEEEeCChH
Confidence 4688999999999999999999999998888765 8899999998765 33333 56799999999996
No 173
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=89.79 E-value=0.86 Score=52.75 Aligned_cols=72 Identities=14% Similarity=0.154 Sum_probs=54.1
Q ss_pred cccccccCCCccHHHHHHHHHhCC-CCeEEecCCchHHHhh-hhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcc
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERL-IPFVALDVRSDRVAIG-RALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~g-i~VvVID~D~e~ve~l-~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~ 1086 (1173)
...++|+|.|.+|..+++.|...| .+++++++++++.+.+ ++.|..++. .+.+.++ +.++|.||.+|+.+..
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~-----~~~~~~~-l~~aDvVi~at~~~~~ 251 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVP-----LDELLEL-LNEADVVISATGAPHY 251 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEe-----HHHHHHH-HhcCCEEEECCCCCch
Confidence 356899999999999999998866 6799999999887655 444553332 2234333 5679999999998876
No 174
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=89.77 E-value=58 Score=44.08 Aligned_cols=18 Identities=22% Similarity=0.462 Sum_probs=9.8
Q ss_pred HHHHHHHHh---CCCCeEEec
Q 001051 1022 QIIAQLLSE---RLIPFVALD 1039 (1173)
Q Consensus 1022 ~~Ia~~L~~---~gi~VvVID 1039 (1173)
..++..|.- .+.|++++|
T Consensus 1083 ~~la~~~~~~~~~~~~~~~lD 1103 (1164)
T TIGR02169 1083 TALSFIFAIQRYKPSPFYAFD 1103 (1164)
T ss_pred HHHHHHHHHHhcCCCCcEEec
Confidence 344444432 355777776
No 175
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=89.75 E-value=0.41 Score=55.76 Aligned_cols=67 Identities=16% Similarity=0.176 Sum_probs=54.1
Q ss_pred cccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCC
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd 1084 (1173)
-+.++|||||..|+-++..|+..|.+|+|.|.||-+.-++.=.|+.|+. ++++ +..+|.+|.+|++-
T Consensus 209 GK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~--------m~~A-a~~gDifiT~TGnk 275 (420)
T COG0499 209 GKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMT--------MEEA-AKTGDIFVTATGNK 275 (420)
T ss_pred CceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEEE--------hHHh-hhcCCEEEEccCCc
Confidence 3568999999999999999999999999999999988777777998885 3232 23567777777663
No 176
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=89.69 E-value=0.16 Score=51.44 Aligned_cols=74 Identities=9% Similarity=0.020 Sum_probs=55.5
Q ss_pred cccccccCCCccHHHHHHHHHhCCCC-eEEecCCchHHHhhhhC--CCCEEEecCCCHHHHhhcCccccCEEEEecCCCc
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLIP-FVALDVRSDRVAIGRAL--DLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi~-VvVID~D~e~ve~l~~~--g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~ 1085 (1173)
.++++|+|.|..|+.++..|.++|.+ ++++.++.++.+.+.+. +..+-..+..+.. ..+.++|.||.+|+-+.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~----~~~~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLE----EALQEADIVINATPSGM 87 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHC----HHHHTESEEEE-SSTTS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHH----HHHhhCCeEEEecCCCC
Confidence 46899999999999999999999988 99999999998877543 2333333333332 12557999999998875
Q ss_pred c
Q 001051 1086 A 1086 (1173)
Q Consensus 1086 ~ 1086 (1173)
.
T Consensus 88 ~ 88 (135)
T PF01488_consen 88 P 88 (135)
T ss_dssp T
T ss_pred c
Confidence 4
No 177
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=89.65 E-value=2.1 Score=49.43 Aligned_cols=112 Identities=15% Similarity=0.091 Sum_probs=70.8
Q ss_pred cccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEE--ecCCC--HHHHhh-cCccccCEEEEecCCCc
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYF--GDAGS--REVLHK-VGAERACAAAITLDTPG 1085 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~--GDasd--~e~Le~-agI~~A~~VVi~t~Dd~ 1085 (1173)
++.|+|.|.+|..++..|.+.|++|+++.+++. +..+..|..+.. |+... ...... .....+|.|++++....
T Consensus 7 ~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~~ 84 (313)
T PRK06249 7 RIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKTTA 84 (313)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecCCC
Confidence 588999999999999999999999999999863 445555654321 22100 000000 02357899999997764
Q ss_pred chHHHHHHHHh-hCCCceEEEEecChhhHHHHHH-CCCCeee
Q 001051 1086 ANYRTVWALSK-YFPNVKTFVRAHDIDHGLNLEK-AGATAVV 1125 (1173)
Q Consensus 1086 ~Ni~iv~~ar~-l~p~~~IIara~d~e~~~~L~~-aGAd~VI 1125 (1173)
. ..+...++. ..++..++...+.-.+.+.+.+ .+-.+|+
T Consensus 85 ~-~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~~~~v~ 125 (313)
T PRK06249 85 N-ALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILPAEHLL 125 (313)
T ss_pred h-HhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCCCCcEE
Confidence 3 233333333 4567667777777677666654 3444443
No 178
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=89.57 E-value=16 Score=40.73 Aligned_cols=168 Identities=20% Similarity=0.224 Sum_probs=88.1
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001051 150 TDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSL 229 (1173)
Q Consensus 150 ~~~~~~~l~~~~~~~e~a~~~~~~~e~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~ 229 (1173)
|+....=|..+.+.++...--...+|.+.+...+..-.|.++...|....+.+-....++..+=.+...-...|--.+..
T Consensus 59 L~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~ 138 (237)
T PF00261_consen 59 LEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEA 138 (237)
T ss_dssp CCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55556666666666666666667777777777777777777766666666555444444444433333333444444444
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHH
Q 001051 230 AEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLN 309 (1173)
Q Consensus 230 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~ 309 (1173)
+|.+...-.+-+..+......++.+.+ +-.+-...-.+.|+..+..|.+-|.+......+...||+++++|.
T Consensus 139 ~E~ki~eLE~el~~~~~~lk~lE~~~~--------~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le 210 (237)
T PF00261_consen 139 AESKIKELEEELKSVGNNLKSLEASEE--------KASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLE 210 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hchhHHHHHHHHHHHHHHHHHhhhhhh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444433333222222221111 001112334445566666666666666666666666666666666
Q ss_pred HHHHHHHHHHhhhHHH
Q 001051 310 EVAEKAQMNALKAEED 325 (1173)
Q Consensus 310 ~~~~~~~~~~~~a~~~ 325 (1173)
+-..+.+..-.+...+
T Consensus 211 ~eL~~~k~~~~~~~~e 226 (237)
T PF00261_consen 211 DELEKEKEKYKKVQEE 226 (237)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6555555444444333
No 179
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.57 E-value=0.83 Score=55.78 Aligned_cols=73 Identities=21% Similarity=0.122 Sum_probs=56.9
Q ss_pred cccccccCCCccHHHHHHHHHhCCCCeEEecCCch-----HHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCC
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSD-----RVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDT 1083 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e-----~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~D 1083 (1173)
.++++|+|.|..|..+++.|.++|++|+++|.++. ..+.+++.|..++.|+... ....+|.||++++-
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~-------~~~~~D~Vv~s~Gi 88 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPT-------LPEDTDLVVTSPGW 88 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc-------ccCCCCEEEECCCc
Confidence 34789999999999999999999999999996642 2345677899998887554 13468999988877
Q ss_pred CcchH
Q 001051 1084 PGANY 1088 (1173)
Q Consensus 1084 d~~Ni 1088 (1173)
+..|-
T Consensus 89 ~~~~~ 93 (480)
T PRK01438 89 RPDAP 93 (480)
T ss_pred CCCCH
Confidence 64443
No 180
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=89.30 E-value=1.9 Score=52.85 Aligned_cols=121 Identities=13% Similarity=0.049 Sum_probs=75.4
Q ss_pred ccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhC---CCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchH
Q 001051 1012 IILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL---DLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1173)
Q Consensus 1012 vIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~---g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni 1088 (1173)
+-++|.|.+|..+++.|.+.|++|++.|+++++++.+.+. |-.+. + ..+.+.+-+ .+++++.|+++++++..--
T Consensus 2 IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~-~-~~s~~e~v~-~l~~~dvIil~v~~~~~v~ 78 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIV-G-AYSIEEFVQ-SLERPRKIMLMVKAGAPVD 78 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCce-e-cCCHHHHHh-hcCCCCEEEEECCCcHHHH
Confidence 5679999999999999999999999999999999988765 21111 1 223332222 2356898888888864333
Q ss_pred HHHHHHHh-hCCCceEEEEecC------hhhHHHHHHCCCCeeecCCcHHHHHHHH
Q 001051 1089 RTVWALSK-YFPNVKTFVRAHD------IDHGLNLEKAGATAVVPETLEPSLQLAA 1137 (1173)
Q Consensus 1089 ~iv~~ar~-l~p~~~IIara~d------~e~~~~L~~aGAd~VI~p~~~aa~~LA~ 1137 (1173)
.+...+.. +.++ .+|+-..+ ....+.+++.|+..|=.|- ..+..-|+
T Consensus 79 ~Vi~~l~~~L~~g-~iIID~gns~~~~t~~~~~~l~~~gi~fvdapV-sGG~~gA~ 132 (467)
T TIGR00873 79 AVINQLLPLLEKG-DIIIDGGNSHYPDTERRYKELKAKGILFVGSGV-SGGEEGAR 132 (467)
T ss_pred HHHHHHHhhCCCC-CEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCC-CCCHHHHh
Confidence 33333333 3454 46665443 2244556667876554443 33343333
No 181
>PLN00106 malate dehydrogenase
Probab=89.23 E-value=2.2 Score=49.80 Aligned_cols=139 Identities=16% Similarity=0.115 Sum_probs=86.4
Q ss_pred cccccccCC-CccHHHHHHHHHhCCC--CeEEecCCchHHH--hhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCC
Q 001051 1009 QDHIILCGF-GRVGQIIAQLLSERLI--PFVALDVRSDRVA--IGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDT 1083 (1173)
Q Consensus 1009 k~hvIIiG~-G~~G~~Ia~~L~~~gi--~VvVID~D~e~ve--~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~D 1083 (1173)
..++.|+|. |.+|..++..|...+. +++++|.++...+ .+.+....+...+.++...+. ..+.++|.||++.+.
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~-~~l~~aDiVVitAG~ 96 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLG-DALKGADLVIIPAGV 96 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHH-HHcCCCCEEEEeCCC
Confidence 358999999 9999999999986665 7999999872111 222222232333322221122 246689999999887
Q ss_pred Cc-----------chHH----HHHHHHhhCCCceEEEEecChh-----hHHHHHHC-C--CCeeecCCcHHHHHHHHHHH
Q 001051 1084 PG-----------ANYR----TVWALSKYFPNVKTFVRAHDID-----HGLNLEKA-G--ATAVVPETLEPSLQLAAAVL 1140 (1173)
Q Consensus 1084 d~-----------~Ni~----iv~~ar~l~p~~~IIara~d~e-----~~~~L~~a-G--Ad~VI~p~~~aa~~LA~~vl 1140 (1173)
+. .|+. ++..+++.+|+..+++.++-.+ ....+.+. | .++|+--...-+.++.+.+-
T Consensus 97 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~~LDs~Rl~~~lA 176 (323)
T PLN00106 97 PRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVA 176 (323)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEecchHHHHHHHHH
Confidence 52 4443 4457888899865555544443 23334443 3 37787666666777777777
Q ss_pred HhcCCCHH
Q 001051 1141 AQAKLPAS 1148 (1173)
Q Consensus 1141 ~~l~~~~~ 1148 (1173)
..++++..
T Consensus 177 ~~lgv~~~ 184 (323)
T PLN00106 177 EKKGLDPA 184 (323)
T ss_pred HHhCCChh
Confidence 77766543
No 182
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=88.94 E-value=0.27 Score=50.25 Aligned_cols=81 Identities=15% Similarity=0.169 Sum_probs=51.7
Q ss_pred ccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchHHHH
Q 001051 1012 IILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTV 1091 (1173)
Q Consensus 1012 vIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni~iv 1091 (1173)
.+|+|.|.+++.+++.....|++|+++|.+++..... -.+.. ....+..+...+..-++| +++.+......+.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~~~~~----~~~~~--~~~~~~~~~~~~~~~t~V-v~th~h~~D~~~L 73 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPERFPEA----DEVIC--IPPDDILEDLEIDPNTAV-VMTHDHELDAEAL 73 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC-TTS----SEEEC--SHHHHHHHHC-S-TT-EE-E--S-CCCHHHHH
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccccCCC----CccEe--cChHHHHhccCCCCCeEE-EEcCCchhHHHHH
Confidence 3689999999999999999999999999998855321 11222 223555577788777776 6787777777777
Q ss_pred HHHHhhCC
Q 001051 1092 WALSKYFP 1099 (1173)
Q Consensus 1092 ~~ar~l~p 1099 (1173)
..+.+..+
T Consensus 74 ~~~l~~~~ 81 (136)
T PF13478_consen 74 EAALASPA 81 (136)
T ss_dssp HHHTTSS-
T ss_pred HHHHcCCC
Confidence 76665543
No 183
>PLN02427 UDP-apiose/xylose synthase
Probab=88.93 E-value=0.74 Score=54.37 Aligned_cols=70 Identities=17% Similarity=0.082 Sum_probs=54.1
Q ss_pred cccccC-CCccHHHHHHHHHhC-CCCeEEecCCchHHHhhhh-------CCCCEEEecCCCHHHHhhcCccccCEEEEec
Q 001051 1011 HIILCG-FGRVGQIIAQLLSER-LIPFVALDVRSDRVAIGRA-------LDLPVYFGDAGSREVLHKVGAERACAAAITL 1081 (1173)
Q Consensus 1011 hvIIiG-~G~~G~~Ia~~L~~~-gi~VvVID~D~e~ve~l~~-------~g~~vi~GDasd~e~Le~agI~~A~~VVi~t 1081 (1173)
+++|.| .|-+|..+++.|.++ |++|+++|++++....+.. .++.++.||..|.+.+.++ +.++++||=+.
T Consensus 16 ~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~-~~~~d~ViHlA 94 (386)
T PLN02427 16 TICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGL-IKMADLTINLA 94 (386)
T ss_pred EEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHH-hhcCCEEEEcc
Confidence 477777 599999999999988 5999999988776655432 2467899999999988775 34577776433
No 184
>PRK09291 short chain dehydrogenase; Provisional
Probab=88.79 E-value=0.8 Score=50.20 Aligned_cols=73 Identities=18% Similarity=0.013 Sum_probs=56.7
Q ss_pred ccccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhh------CCCCEEEecCCCHHHHhhcCccccCEEEEecC
Q 001051 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA------LDLPVYFGDAGSREVLHKVGAERACAAAITLD 1082 (1173)
Q Consensus 1010 ~hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~------~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~ 1082 (1173)
+.++|.| .|.+|..+++.|.+.|++|++++++++..+.+.+ .++.++.+|.++++.++++--...+.+|-...
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~ag 82 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNNAG 82 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEECCC
Confidence 3567776 4789999999999999999999998776554432 24678889999999998874447888777543
No 185
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=88.59 E-value=1 Score=51.78 Aligned_cols=70 Identities=20% Similarity=0.239 Sum_probs=52.8
Q ss_pred ccccccCCCccHHHHHHHHHhCCC--CeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCc
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLI--PFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi--~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~ 1085 (1173)
.++.|+|.|.+|..++..|.+.|+ +|+++|++++..+.+++.|.....- .+. .+ -++++|.||++++.+.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~--~~~---~~-~~~~aDvViiavp~~~ 78 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVT--TSA---AE-AVKGADLVILCVPVGA 78 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceec--CCH---HH-HhcCCCEEEECCCHHH
Confidence 468999999999999999999885 7999999999888887776532111 111 11 1357999999998863
No 186
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=88.52 E-value=1 Score=51.45 Aligned_cols=78 Identities=15% Similarity=0.121 Sum_probs=61.1
Q ss_pred cccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchH
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni 1088 (1173)
.+.+||||||++|+-.++.|+..|..|+|-+.||-..-++.=+|+++. +|+++ +.+.+.+|.+|+. .|+
T Consensus 214 GKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~--------tm~ea-~~e~difVTtTGc--~di 282 (434)
T KOG1370|consen 214 GKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVT--------TLEEA-IREVDIFVTTTGC--KDI 282 (434)
T ss_pred ccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEee--------eHHHh-hhcCCEEEEccCC--cch
Confidence 456889999999999999999999999999999988766666688877 55554 4568888888877 355
Q ss_pred HHHHHHHhh
Q 001051 1089 RTVWALSKY 1097 (1173)
Q Consensus 1089 ~iv~~ar~l 1097 (1173)
......++.
T Consensus 283 i~~~H~~~m 291 (434)
T KOG1370|consen 283 ITGEHFDQM 291 (434)
T ss_pred hhHHHHHhC
Confidence 555555543
No 187
>PRK06953 short chain dehydrogenase; Provisional
Probab=88.49 E-value=1.2 Score=47.94 Aligned_cols=71 Identities=14% Similarity=0.087 Sum_probs=57.7
Q ss_pred ccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhc--Cc--cccCEEEEecC
Q 001051 1012 IILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKV--GA--ERACAAAITLD 1082 (1173)
Q Consensus 1012 vIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~a--gI--~~A~~VVi~t~ 1082 (1173)
++|.| .|.+|..+++.|.+.|.+|++++++++..+.+...+..++.+|.++++.++++ .+ ...+.++...+
T Consensus 4 vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~~ag 79 (222)
T PRK06953 4 VLIVGASRGIGREFVRQYRADGWRVIATARDAAALAALQALGAEALALDVADPASVAGLAWKLDGEALDAAVYVAG 79 (222)
T ss_pred EEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHHHhccceEEEecCCCHHHHHHHHHHhcCCCCCEEEECCC
Confidence 55555 78899999999999999999999999888888777788899999999988774 12 34677776543
No 188
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=88.48 E-value=2.8 Score=50.21 Aligned_cols=70 Identities=26% Similarity=0.244 Sum_probs=48.6
Q ss_pred ccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHh------------hcCccccCEEEE
Q 001051 1012 IILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLH------------KVGAERACAAAI 1079 (1173)
Q Consensus 1012 vIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le------------~agI~~A~~VVi 1079 (1173)
+.|+|.|.+|..++..+. .|++|+++|.|+++++.+++.-.+. +....+ +.+. ..-+.+++.+++
T Consensus 3 I~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~-~e~~l~-~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 3 ITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPI-VDKEIQ-QFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred EEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCC-CCcCHH-HHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 678999999999997776 4999999999999999887532221 111100 0000 001368999999
Q ss_pred ecCCC
Q 001051 1080 TLDTP 1084 (1173)
Q Consensus 1080 ~t~Dd 1084 (1173)
+++++
T Consensus 80 ~Vpt~ 84 (388)
T PRK15057 80 ATPTD 84 (388)
T ss_pred eCCCC
Confidence 99876
No 189
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=88.47 E-value=0.2 Score=52.07 Aligned_cols=71 Identities=14% Similarity=0.136 Sum_probs=49.3
Q ss_pred ccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEE------ec----CCCHHHHhhcCccccCEEEEec
Q 001051 1012 IILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYF------GD----AGSREVLHKVGAERACAAAITL 1081 (1173)
Q Consensus 1012 vIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~------GD----asd~e~Le~agI~~A~~VVi~t 1081 (1173)
+.|+|.|.+|..++..|..+|++|.+..+|++.++.+++.+.+..+ .+ .+|. ++ -++++|.+++++
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl---~~-a~~~ad~Iiiav 77 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDL---EE-ALEDADIIIIAV 77 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSH---HH-HHTT-SEEEE-S
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCH---HH-HhCcccEEEecc
Confidence 6799999999999999999999999999999998888654321110 00 1222 11 235789999999
Q ss_pred CCCcc
Q 001051 1082 DTPGA 1086 (1173)
Q Consensus 1082 ~Dd~~ 1086 (1173)
+....
T Consensus 78 Ps~~~ 82 (157)
T PF01210_consen 78 PSQAH 82 (157)
T ss_dssp -GGGH
T ss_pred cHHHH
Confidence 88754
No 190
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=88.39 E-value=2.2 Score=52.66 Aligned_cols=114 Identities=13% Similarity=0.098 Sum_probs=73.1
Q ss_pred cccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhC----CCCEEEecCCCHHHHhhcCccccCEEEEecCCCcc
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL----DLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~----g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~ 1086 (1173)
++-++|.|..|..+++.|.+.|++|+|.|+++++++.+.+. |...+.+ ..+++-+-+ .+++++.|++++.+++.
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~-a~s~~e~v~-~l~~~dvIi~~v~~~~a 85 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYG-FKDPEDFVL-SIQKPRSVIILVKAGAP 85 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCccccc-CCCHHHHHh-cCCCCCEEEEECCCcHH
Confidence 57889999999999999999999999999999999887653 3221111 122222211 34579999999988864
Q ss_pred hHHHHH-HHHhhCCCceEEEEecCh------hhHHHHHHCCCCeeecC
Q 001051 1087 NYRTVW-ALSKYFPNVKTFVRAHDI------DHGLNLEKAGATAVVPE 1127 (1173)
Q Consensus 1087 Ni~iv~-~ar~l~p~~~IIara~d~------e~~~~L~~aGAd~VI~p 1127 (1173)
--.+.. .+..+.++ .|++-..+. ...+.+++.|+..+=-|
T Consensus 86 V~~Vi~gl~~~l~~G-~iiID~sT~~~~~t~~~~~~l~~~Gi~fldap 132 (493)
T PLN02350 86 VDQTIKALSEYMEPG-DCIIDGGNEWYENTERRIKEAAEKGLLYLGMG 132 (493)
T ss_pred HHHHHHHHHhhcCCC-CEEEECCCCCHHHHHHHHHHHHHcCCeEEeCC
Confidence 333322 23334454 566655442 23455566677654433
No 191
>PRK08507 prephenate dehydrogenase; Validated
Probab=88.36 E-value=0.75 Score=52.04 Aligned_cols=87 Identities=15% Similarity=0.124 Sum_probs=58.2
Q ss_pred cccccCCCccHHHHHHHHHhCCC--CeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchH
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLI--PFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi--~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni 1088 (1173)
++.|+|.|.+|..++..|.+.|+ +++++|++++..+.+.+.|..... .+ +.++ .++|.||++++.+...-
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~---~~---~~~~--~~aD~Vilavp~~~~~~ 73 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEI---VS---FEEL--KKCDVIFLAIPVDAIIE 73 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCccc---CC---HHHH--hcCCEEEEeCcHHHHHH
Confidence 36789999999999999999886 688889999998888777753111 12 2222 24899999998874322
Q ss_pred HHHHHHHhhCCCceEEEEe
Q 001051 1089 RTVWALSKYFPNVKTFVRA 1107 (1173)
Q Consensus 1089 ~iv~~ar~l~p~~~IIara 1107 (1173)
++..+....++ .+|+-+
T Consensus 74 -~~~~l~~l~~~-~iv~d~ 90 (275)
T PRK08507 74 -ILPKLLDIKEN-TTIIDL 90 (275)
T ss_pred -HHHHHhccCCC-CEEEEC
Confidence 22333334444 344433
No 192
>KOG3826 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=88.36 E-value=0.37 Score=53.00 Aligned_cols=135 Identities=13% Similarity=0.063 Sum_probs=96.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh-----cCCCchHHHHHHHHHhhccccc--ccccCchhHHHHHHHHHHHHHHHHhhc
Q 001051 599 EEASLFDVLWLLLASVIFVPIFQK-----IPGGSPVLGYLAAGILIGPYGL--SIIRHVHGTKAIAEFGVVFLLFNIGLE 671 (1173)
Q Consensus 599 ~~~~Ll~l~lLLl~A~ilg~L~~R-----l~~lP~IvG~LLaGILLGP~gL--gli~~~~~~~~LaeLGL~~LLF~aGLE 671 (1173)
.+..++.+.++...+...+.+.+- .+++|+.+|++++|.++=+... +.+........+..+.+.++.-..|++
T Consensus 95 ~G~~l~~~iV~~~lA~~g~~lle~A~~P~~i~l~~aigel~a~fLiiNI~~~~~~~~~~iv~s~l~t~a~~I~~ik~gLg 174 (252)
T KOG3826|consen 95 PGGNLFGLIVIWGLATDGGFLLELARVPVTIGLPTAIGELLAGFLIINISFVNGAVCAPIVVSPLRTVALTIIKIKAGLG 174 (252)
T ss_pred cccceEeeehhhhHhhchHhhHhhccccccccccchHHHHHHHHHheecchhhhceeeeeeehhhhhccchHHHHHhhhc
Confidence 334445556666667777777662 2357779999999977764321 111222345677888899999999999
Q ss_pred CChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHHHHHHH
Q 001051 672 LSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVL 733 (1173)
Q Consensus 672 ldl~~Lrr~~k~il~La~~~vllt~~~vgll~~~llGls~~~ALlLGaiLS~TSpaVVv~vL 733 (1173)
++.+.+++.......+.+....+.+-.-+...++++..+|.++++.|.+....+.....+-.
T Consensus 175 t~~r~~~nv~~vc~~~~v~~~~~~a~a~~~~S~~~l~~~ii~~~l~g~v~~~i~~~~~r~~~ 236 (252)
T KOG3826|consen 175 TLPRAPENVLAVCCVLMVLPSIIEASAPAVTSHFLLAGPIIWAFLLGIVIGSILWRFPRPDY 236 (252)
T ss_pred ccccchhhhhHHHhhhhhhhhhhccccHHHHHHHHhccchHHHhccccceeeeecCCccccc
Confidence 99999888887777766666665554455667888899999999999999988887665544
No 193
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=88.33 E-value=1.5 Score=52.27 Aligned_cols=71 Identities=21% Similarity=0.260 Sum_probs=54.0
Q ss_pred cccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHH------hh--hhCCCCEEEecCCCHHHHhhcCcc---ccCEEE
Q 001051 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVA------IG--RALDLPVYFGDAGSREVLHKVGAE---RACAAA 1078 (1173)
Q Consensus 1011 hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve------~l--~~~g~~vi~GDasd~e~Le~agI~---~A~~VV 1078 (1173)
.++|.| .|.+|..+++.|.++|++|+++++++...+ .. ...+..++.||.+|++.+.++--. .+|.|+
T Consensus 62 kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~~~D~Vi 141 (390)
T PLN02657 62 TVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGDPVDVVV 141 (390)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCCCCcEEE
Confidence 466666 599999999999999999999999875432 11 123678999999999999876322 578888
Q ss_pred Eec
Q 001051 1079 ITL 1081 (1173)
Q Consensus 1079 i~t 1081 (1173)
.+.
T Consensus 142 ~~a 144 (390)
T PLN02657 142 SCL 144 (390)
T ss_pred ECC
Confidence 654
No 194
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=88.32 E-value=5 Score=47.23 Aligned_cols=106 Identities=11% Similarity=0.121 Sum_probs=68.9
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHhhcccccccccCc------hhHHHHHHHHHHHHHHHHhhc-CChhHHHhch-hhHH
Q 001051 614 VIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRHV------HGTKAIAEFGVVFLLFNIGLE-LSVERLSSMK-KYVF 685 (1173)
Q Consensus 614 ~ilg~L~~Rl~~lP~IvG~LLaGILLGP~gLgli~~~------~~~~~LaeLGL~~LLF~aGLE-ldl~~Lrr~~-k~il 685 (1173)
++++.++..+|++|+.+.+++.|+++-- +|++++. ..-+++..-....+++-.|+. +|++++.+.. .+.+
T Consensus 192 y~~g~l~~~~~~Ih~~v~mII~~vi~k~--~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~v 269 (347)
T TIGR00783 192 FMAGGLLKSFPGIPAYAFMILIAAALKA--FGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFV 269 (347)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHh
Confidence 3445566677789999999999999985 5666542 223466666666777778986 8999999887 4444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChH-HHHHHhhccc
Q 001051 686 GLGSAQVLVTAVVVGLVAHFVSGLPGP-ASIVIGNGLA 722 (1173)
Q Consensus 686 ~La~~~vllt~~~vgll~~~llGls~~-~ALlLGaiLS 722 (1173)
.+.+. .++...+.+++...++|+-+. .|+.-|.+.+
T Consensus 270 viiv~-~Vlg~ii~s~lvGKllG~YPiE~aItagLC~~ 306 (347)
T TIGR00783 270 VICLS-VVVAMILGGAFLGKLMGMYPVESAITAGLCNS 306 (347)
T ss_pred hhHHH-HHHHHHHHHHHHHHHhCCChHHHHHHHhhhcc
Confidence 44333 344444566666667787554 4444454444
No 195
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=88.14 E-value=0.95 Score=47.89 Aligned_cols=51 Identities=35% Similarity=0.446 Sum_probs=43.3
Q ss_pred hhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 001051 274 ENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEE 324 (1173)
Q Consensus 274 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~a~~ 324 (1173)
+.|+-+.++.+..-...|+.+|.+++++-|+-|+.||+++.+|+.+.|-+|
T Consensus 142 eA~~t~lk~~~~~~~~~le~Lqkn~~~~~k~~d~~ne~~~~v~~e~skkk~ 192 (192)
T COG5374 142 EADSTDLKARLRKAQILLEGLQKNQEELFKLLDKYNELREQVQKESSKKKE 192 (192)
T ss_pred hcchHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCC
Confidence 345566677777777889999999999999999999999999999887653
No 196
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=88.11 E-value=1.6 Score=50.58 Aligned_cols=93 Identities=15% Similarity=0.053 Sum_probs=60.2
Q ss_pred cccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEE--ec-----CCCHHHHhhcCccccCEEEEecCC
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYF--GD-----AGSREVLHKVGAERACAAAITLDT 1083 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~--GD-----asd~e~Le~agI~~A~~VVi~t~D 1083 (1173)
++.|+|.|.+|..++..|.+.|++|++++++++..+.+...+.+..+ |. ..-.+.+.++ ++.+|.|++++++
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~-~~~aD~Vi~~v~~ 84 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEA-LAGADFAVVAVPS 84 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHH-HcCCCEEEEECch
Confidence 58899999999999999999999999999999988777654221111 10 0001112221 3578999999988
Q ss_pred CcchHHHHHHHHhhCCCceEEEEec
Q 001051 1084 PGANYRTVWALSKYFPNVKTFVRAH 1108 (1173)
Q Consensus 1084 d~~Ni~iv~~ar~l~p~~~IIara~ 1108 (1173)
... -..++.+.|...++..++
T Consensus 85 ~~~----~~v~~~l~~~~~vi~~~~ 105 (328)
T PRK14618 85 KAL----RETLAGLPRALGYVSCAK 105 (328)
T ss_pred HHH----HHHHHhcCcCCEEEEEee
Confidence 742 222244445544444444
No 197
>PRK10637 cysG siroheme synthase; Provisional
Probab=88.10 E-value=1 Score=54.90 Aligned_cols=84 Identities=17% Similarity=0.050 Sum_probs=64.1
Q ss_pred cccccccCCCccHHHHHHHHHhCCCCeEEecCCc-hHHHhhhhC-CCCEEEecCCCHHHHhhcCccccCEEEEecCCCcc
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRS-DRVAIGRAL-DLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~-e~ve~l~~~-g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~ 1086 (1173)
.++++|+|+|.++..=++.|.+.|..|+||-++- +.+..+... .+..+..+.... .+++++.|+++|+|.+.
T Consensus 12 ~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~------dl~~~~lv~~at~d~~~ 85 (457)
T PRK10637 12 DRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDES------LLDTCWLAIAATDDDAV 85 (457)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChH------HhCCCEEEEECCCCHHH
Confidence 3679999999999999999999999999996652 234444333 345555555332 34678999999999999
Q ss_pred hHHHHHHHHhhC
Q 001051 1087 NYRTVWALSKYF 1098 (1173)
Q Consensus 1087 Ni~iv~~ar~l~ 1098 (1173)
|-.+...+++.+
T Consensus 86 n~~i~~~a~~~~ 97 (457)
T PRK10637 86 NQRVSEAAEARR 97 (457)
T ss_pred hHHHHHHHHHcC
Confidence 999999998753
No 198
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=88.02 E-value=2.5 Score=52.89 Aligned_cols=73 Identities=15% Similarity=0.068 Sum_probs=57.1
Q ss_pred ccccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhh---------------CCCCEEEecCCCHHHHhhcCccc
Q 001051 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA---------------LDLPVYFGDAGSREVLHKVGAER 1073 (1173)
Q Consensus 1010 ~hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~---------------~g~~vi~GDasd~e~Le~agI~~ 1073 (1173)
+.++|.| .|.+|+.+++.|.+.|++|++++++.++.+.+.+ ..+.++.||.++.+.++++ +.+
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a-Lgg 159 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA-LGN 159 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH-hcC
Confidence 4566666 5899999999999999999999999887754321 1356889999999988763 457
Q ss_pred cCEEEEecCC
Q 001051 1074 ACAAAITLDT 1083 (1173)
Q Consensus 1074 A~~VVi~t~D 1083 (1173)
+|+||.+.+.
T Consensus 160 iDiVVn~AG~ 169 (576)
T PLN03209 160 ASVVICCIGA 169 (576)
T ss_pred CCEEEEcccc
Confidence 8888887654
No 199
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=87.98 E-value=24 Score=39.33 Aligned_cols=89 Identities=19% Similarity=0.117 Sum_probs=66.4
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhhcccCCcchhhHHHHHHHhhccchhhhHHHHHHHHH
Q 001051 891 PKLLLSNFPVITGALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVG 970 (1173)
Q Consensus 891 l~~L~~~~~lilllvvllvv~K~l~v~l~~~l~g~~~real~lGl~LaprGevalvla~lAl~~giis~el~silvlvVv 970 (1173)
+..+..+|..++.-+++..+.-++..++.++++|.+.. +-..+.||+...-+.+....+.|.+++-....++++-+
T Consensus 83 ~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~----~~~Sl~PkSvTTpiAm~vs~~iGGip~ltav~Vi~tGi 158 (230)
T COG1346 83 RHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPE----LILSLLPKSVTTPIAMEVSESIGGIPALTAVFVILTGI 158 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH----HHHHhcccccccHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 45566677766666666667777888888999988742 23357899999988888888888887766666666777
Q ss_pred HHHHHHHHHHhhh
Q 001051 971 ISMALTPWLAAGG 983 (1173)
Q Consensus 971 lS~iItPiL~~~~ 983 (1173)
+..+++|.+.+..
T Consensus 159 ~Gavlg~~llk~~ 171 (230)
T COG1346 159 LGAVLGPLLLKLL 171 (230)
T ss_pred HHHHHHHHHHHHh
Confidence 7888888877654
No 200
>PRK05693 short chain dehydrogenase; Provisional
Probab=87.92 E-value=0.77 Score=51.25 Aligned_cols=72 Identities=11% Similarity=0.074 Sum_probs=58.0
Q ss_pred cccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhc------CccccCEEEEecC
Q 001051 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKV------GAERACAAAITLD 1082 (1173)
Q Consensus 1011 hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~a------gI~~A~~VVi~t~ 1082 (1173)
.++|.| .|.+|..+++.|.++|+.|++++++++..+.+.+.+...+.+|.++++.++++ .....|.+|-..+
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~ag 81 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAAGFTAVQLDVNDGAALARLAEELEAEHGGLDVLINNAG 81 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 466666 57899999999999999999999999888877777888899999998877653 1235677777664
No 201
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=87.91 E-value=76 Score=44.34 Aligned_cols=38 Identities=16% Similarity=0.278 Sum_probs=22.2
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHH
Q 001051 269 LLLAAENDIKECQANLANCETELRRLQSKKEELQKEVD 306 (1173)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~ 306 (1173)
.+...++++.+++..+..-+.++.+...++.++.+++.
T Consensus 348 ~a~~~~~~~~~a~~~~e~~~~~~~~~~~r~~~~~~~l~ 385 (1353)
T TIGR02680 348 AAADARQAIREAESRLEEERRRLDEEAGRLDDAERELR 385 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666666666666666666655543
No 202
>PRK06545 prephenate dehydrogenase; Validated
Probab=87.68 E-value=0.9 Score=53.62 Aligned_cols=80 Identities=16% Similarity=0.213 Sum_probs=55.8
Q ss_pred cccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchHHH
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRT 1090 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni~i 1090 (1173)
++.|+|.|.+|..++..|.+.|+++.+++.|++..+.....+..++.-..++ +.+ -+.++|.||++++.+. ...+
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~---~~~-~~~~aDlVilavP~~~-~~~v 76 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAAD---LQR-AAAEADLIVLAVPVDA-TAAL 76 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccC---HHH-HhcCCCEEEEeCCHHH-HHHH
Confidence 4788999999999999999999999999999887665554444333211112 222 2468999999998863 3344
Q ss_pred HHHHH
Q 001051 1091 VWALS 1095 (1173)
Q Consensus 1091 v~~ar 1095 (1173)
...++
T Consensus 77 l~~l~ 81 (359)
T PRK06545 77 LAELA 81 (359)
T ss_pred HHHHh
Confidence 44444
No 203
>PRK07326 short chain dehydrogenase; Provisional
Probab=87.63 E-value=0.82 Score=49.47 Aligned_cols=72 Identities=10% Similarity=-0.012 Sum_probs=54.4
Q ss_pred ccccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhh-----CCCCEEEecCCCHHHHhhcC------ccccCEE
Q 001051 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-----LDLPVYFGDAGSREVLHKVG------AERACAA 1077 (1173)
Q Consensus 1010 ~hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~-----~g~~vi~GDasd~e~Le~ag------I~~A~~V 1077 (1173)
+.++|.| .|.+|..+++.|.+.|++|++++++++..+.+.+ .+..++.+|.++++.++++= ....+.+
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~v 86 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGLDVL 86 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 5577776 5899999999999999999999999876654422 34677889999998775431 1367787
Q ss_pred EEec
Q 001051 1078 AITL 1081 (1173)
Q Consensus 1078 Vi~t 1081 (1173)
|-..
T Consensus 87 i~~a 90 (237)
T PRK07326 87 IANA 90 (237)
T ss_pred EECC
Confidence 7654
No 204
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=87.55 E-value=6.8 Score=45.47 Aligned_cols=86 Identities=19% Similarity=0.196 Sum_probs=59.3
Q ss_pred HHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcCChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhC
Q 001051 629 VLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSG 708 (1173)
Q Consensus 629 IvG~LLaGILLGP~gLgli~~~~~~~~LaeLGL~~LLF~aGLEldl~~Lrr~~k~il~La~~~vllt~~~vgll~~~llG 708 (1173)
.+--++.|+++|+.-.++ .+..+.-..+++.+..|..|..+|+..+.+.+...+.++++.++++.+ .++++..++|
T Consensus 169 lilpILiGmilGNld~~~---~~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~-~~~~i~rllg 244 (312)
T PRK12460 169 ALLPLVLGMILGNLDPDM---RKFLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGF-FNIFADRLVG 244 (312)
T ss_pred HHHHHHHHHHHhccchhh---HHHHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHH-HHHHHHHHhC
Confidence 344566777777732111 112222223478888999999999999999999999888887777765 4444445568
Q ss_pred CChHHHHHHh
Q 001051 709 LPGPASIVIG 718 (1173)
Q Consensus 709 ls~~~ALlLG 718 (1173)
.+...++++|
T Consensus 245 ~~~~~g~li~ 254 (312)
T PRK12460 245 GTGIAGAAAS 254 (312)
T ss_pred CChhHHHHHH
Confidence 8888888887
No 205
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=87.47 E-value=2.1 Score=48.06 Aligned_cols=66 Identities=15% Similarity=0.107 Sum_probs=50.3
Q ss_pred cccccCCCccHHHHHHHHHhCC---CCeEEecCCchHHHhhhhC-CCCEEEecCCCHHHHhhcCccccCEEEEecCCC
Q 001051 1011 HIILCGFGRVGQIIAQLLSERL---IPFVALDVRSDRVAIGRAL-DLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~g---i~VvVID~D~e~ve~l~~~-g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd 1084 (1173)
.+.|+|.|.+|..+++.|.+.| .++.++|++++..+.+.+. |..+. ....+. +.++|.|+++++.+
T Consensus 4 ~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~---~~~~~~-----~~~advVil~v~~~ 73 (267)
T PRK11880 4 KIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAA---TDNQEA-----AQEADVVVLAVKPQ 73 (267)
T ss_pred EEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeec---CChHHH-----HhcCCEEEEEcCHH
Confidence 4789999999999999999888 7899999999988877664 54321 111222 35789999999765
No 206
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=87.27 E-value=1.5 Score=51.19 Aligned_cols=68 Identities=18% Similarity=0.215 Sum_probs=50.9
Q ss_pred ccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcc
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~ 1086 (1173)
+.+.|+|+|.+|..+++.|...|.+|++.++.....+.+...|..+. + +.++ +.++|.|++.++|+..
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~-----s---l~Ea-ak~ADVV~llLPd~~t 84 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVM-----S---VSEA-VRTAQVVQMLLPDEQQ 84 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEEC-----C---HHHH-HhcCCEEEEeCCChHH
Confidence 45789999999999999999999999999866555555566666432 2 2221 3468999999998644
No 207
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=87.13 E-value=42 Score=41.94 Aligned_cols=56 Identities=29% Similarity=0.348 Sum_probs=26.9
Q ss_pred HHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 001051 282 ANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEATQ 345 (1173)
Q Consensus 282 ~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~a~~~~~~~m~~ae~av~~e~e~~~ 345 (1173)
..|...-.|.+......+..|.|+.++.+-++.++....-+|... +|+-.|+||++
T Consensus 372 ~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL--------~aa~ke~eaaK 427 (522)
T PF05701_consen 372 KALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERL--------EAALKEAEAAK 427 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence 334444444444444444444455555544444444444444443 34566666654
No 208
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=86.71 E-value=2.4 Score=50.12 Aligned_cols=72 Identities=17% Similarity=0.020 Sum_probs=52.4
Q ss_pred cccccccCC-CccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEec
Q 001051 1009 QDHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITL 1081 (1173)
Q Consensus 1009 k~hvIIiG~-G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t 1081 (1173)
+..++|.|. |-+|..+++.|.++|++|+++++.+.........+..++.||..+.+.+..+- .++|.||-+.
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~-~~~D~Vih~A 93 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVT-KGVDHVFNLA 93 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHH-hCCCEEEEcc
Confidence 456788886 99999999999999999999997643211111123567889999998887652 3577776664
No 209
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=86.70 E-value=2 Score=50.07 Aligned_cols=66 Identities=14% Similarity=0.067 Sum_probs=48.4
Q ss_pred ccccccCCCccHHHHHHHHHhCCCCeEEe-cCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCC
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLIPFVAL-DVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi~VvVI-D~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd 1084 (1173)
+++.++|+|..|..+++.|...|+++++. +++++..+.+.+.|+.+. +..+. ++++|.|+++++++
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~----s~~ea-----~~~ADiVvLaVpp~ 70 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG----TVEEA-----IPQADLIMNLLPDE 70 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC----CHHHH-----HhcCCEEEEeCCcH
Confidence 35788999999999999999999887764 444556666666676421 11222 35789999999976
No 210
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=86.68 E-value=16 Score=42.17 Aligned_cols=154 Identities=18% Similarity=0.285 Sum_probs=80.0
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001051 150 TDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSL 229 (1173)
Q Consensus 150 ~~~~~~~l~~~~~~~e~a~~~~~~~e~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~ 229 (1173)
...+..-+.+.+++++.+++.++-+|.+.+..-+--=+++..-..--.++.+ .|+.-+..|..+ .....++-.|
T Consensus 98 ~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~---~~~~~~~~e~~~---~~~~dL~~~L 171 (312)
T PF00038_consen 98 RKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELRE---QIQSSVTVEVDQ---FRSSDLSAAL 171 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST---T-------------------HHHHH
T ss_pred HHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhh---ccccccceeecc---cccccchhhh
Confidence 3445556677788888888888888888887776555554433321111111 111111111111 1222333334
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHH
Q 001051 230 AEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLN 309 (1173)
Q Consensus 230 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~ 309 (1173)
.+.|-|-...+-....+....++.-. .+-..-......++..+++|+++++..+.....+|..++.++..|.+.+..+.
T Consensus 172 ~eiR~~ye~~~~~~~~e~e~~y~~k~-~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 172 REIRAQYEEIAQKNREELEEWYQSKL-EELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhhhhhhhhhccccc-ccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHH
Confidence 44333322111111000000000000 00000112245688899999999999999999999999999999999998775
Q ss_pred H
Q 001051 310 E 310 (1173)
Q Consensus 310 ~ 310 (1173)
.
T Consensus 251 ~ 251 (312)
T PF00038_consen 251 Q 251 (312)
T ss_dssp H
T ss_pred H
Confidence 3
No 211
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.67 E-value=2.5 Score=48.61 Aligned_cols=75 Identities=17% Similarity=0.196 Sum_probs=51.0
Q ss_pred ccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhC-----CCCE-------EEecCCCHHHHhhcCccccCEE
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL-----DLPV-------YFGDAGSREVLHKVGAERACAA 1077 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~-----g~~v-------i~GDasd~e~Le~agI~~A~~V 1077 (1173)
+++.|+|.|.+|..++..|.+.|++|+++|.+++.++.+++. +... ..+...-...+.+ .++++|.|
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~aDlV 83 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAA-AVSGADLV 83 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHH-HhccCCEE
Confidence 358899999999999999999999999999999888766541 2100 0000000011211 14578999
Q ss_pred EEecCCCc
Q 001051 1078 AITLDTPG 1085 (1173)
Q Consensus 1078 Vi~t~Dd~ 1085 (1173)
+.+++++.
T Consensus 84 i~av~~~~ 91 (311)
T PRK06130 84 IEAVPEKL 91 (311)
T ss_pred EEeccCcH
Confidence 99998774
No 212
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=86.60 E-value=4.6 Score=45.99 Aligned_cols=66 Identities=15% Similarity=0.240 Sum_probs=49.6
Q ss_pred cccccCCCccHHHHHHHHHhCCC----CeEEecCCchHHHhhhh-CCCCEEEecCCCHHHHhhcCccccCEEEEecCCC
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLI----PFVALDVRSDRVAIGRA-LDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi----~VvVID~D~e~ve~l~~-~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd 1084 (1173)
.+.++|.|.+|..+++.|.+.|+ ++++.|+++++.+.+.+ .|..+ .. ...+. +.++|.|++++.+.
T Consensus 4 ~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~-~~--~~~e~-----~~~aDiIiLavkP~ 74 (272)
T PRK12491 4 QIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITI-TT--NNNEV-----ANSADILILSIKPD 74 (272)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEE-eC--CcHHH-----HhhCCEEEEEeChH
Confidence 57899999999999999998874 59999999999888764 56432 11 22222 34789999999853
No 213
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=86.52 E-value=1.9 Score=47.83 Aligned_cols=112 Identities=17% Similarity=0.104 Sum_probs=71.2
Q ss_pred cccccccCCCccHHHHHHHHHhCCCCeE-EecC----------CchHHHhhhhC-CCCEEE--ecCCCHHHHhhcCcccc
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLIPFV-ALDV----------RSDRVAIGRAL-DLPVYF--GDAGSREVLHKVGAERA 1074 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi~Vv-VID~----------D~e~ve~l~~~-g~~vi~--GDasd~e~Le~agI~~A 1074 (1173)
..+++|.|+|.+|+.+++.|.+.|..++ +.|. |.+.+.+.++. |.-.-+ +...+++.+.. .++
T Consensus 31 ~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~---~~~ 107 (227)
T cd01076 31 GARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLE---LDC 107 (227)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCcccee---ecc
Confidence 4578899999999999999999999999 8888 77776655433 211111 11112222222 267
Q ss_pred CEEEEecCCCcchHHHHHHHHhhCCCceEEEEecC----hhhHHHHHHCCCCeeecCCcH
Q 001051 1075 CAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHD----IDHGLNLEKAGATAVVPETLE 1130 (1173)
Q Consensus 1075 ~~VVi~t~Dd~~Ni~iv~~ar~l~p~~~IIara~d----~e~~~~L~~aGAd~VI~p~~~ 1130 (1173)
|.++=+...+..|-..+..++ +++|+-.-+ ++..+.|++-|+- +.|...
T Consensus 108 Dvlip~a~~~~i~~~~~~~l~-----a~~I~egAN~~~t~~a~~~L~~rGi~--~~PD~~ 160 (227)
T cd01076 108 DILIPAALENQITADNADRIK-----AKIIVEAANGPTTPEADEILHERGVL--VVPDIL 160 (227)
T ss_pred cEEEecCccCccCHHHHhhce-----eeEEEeCCCCCCCHHHHHHHHHCCCE--EEChHH
Confidence 887777765555444444333 577775544 5678888888865 345443
No 214
>COG2431 Predicted membrane protein [Function unknown]
Probab=86.50 E-value=3.1 Score=47.14 Aligned_cols=90 Identities=23% Similarity=0.443 Sum_probs=61.0
Q ss_pred hHHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcCC---hh--HHHhchhhHHHHHHHHHHHHHHHHHHH
Q 001051 628 PVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELS---VE--RLSSMKKYVFGLGSAQVLVTAVVVGLV 702 (1173)
Q Consensus 628 ~IvG~LLaGILLGP~gLgli~~~~~~~~LaeLGL~~LLF~aGLEld---l~--~Lrr~~k~il~La~~~vllt~~~vgll 702 (1173)
.+.++.+.|+++|...-.. ....+...+..+.+++|.+|.++. .. +.. .-|+.+.+++... ++.++.|.+
T Consensus 108 k~~~~vl~g~~~G~l~~~~---~~~~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~-Lnk~gl~l~~i~i-lssliGG~i 182 (297)
T COG2431 108 KLLGVVLLGLALGLLTGSF---LNFPENASEYLLYLLLFLIGIQLGNSGISLRQVL-LNKRGLILAFITL-LSSLIGGLI 182 (297)
T ss_pred HHHHHHHHHHHHHHHhccc---ccCchhHHHHHHHHHHHHHHHHhccccchhhhHH-hccchHHHHHHHH-HHHHHHHHH
Confidence 4667888888888643222 233678889999999999999886 22 221 1244555555543 444567778
Q ss_pred HHHHhCCChHHHHHHhhccc
Q 001051 703 AHFVSGLPGPASIVIGNGLA 722 (1173)
Q Consensus 703 ~~~llGls~~~ALlLGaiLS 722 (1173)
..+++++|+.+++.+++.+.
T Consensus 183 aa~~l~lpl~~~lAmasG~G 202 (297)
T COG2431 183 AAFLLDLPLTTGLAMASGFG 202 (297)
T ss_pred HHHHHhccHHHHHHHHhccc
Confidence 88888999988888776544
No 215
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.43 E-value=2.1 Score=48.76 Aligned_cols=40 Identities=15% Similarity=0.244 Sum_probs=35.7
Q ss_pred ccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhh
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGR 1049 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~ 1049 (1173)
.++.|+|.|.+|..++..|...|++|+++|.+++.++.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 43 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAK 43 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHH
Confidence 3588999999999999999999999999999998776654
No 216
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=86.41 E-value=4.2 Score=44.08 Aligned_cols=126 Identities=21% Similarity=0.130 Sum_probs=69.7
Q ss_pred HHHHHHHHhhcccchhHHHHHhHhhHH--HHHHHHHHHHHhcccChhhh---hhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 001051 848 LGAFLAGLLLAETEFSLQVESDIAPYR--GLLLGLFFMTVGMSIDPKLL---LSNFPVITGALGLLIGGKTILVALVGRL 922 (1173)
Q Consensus 848 LGAFvAGLiLsn~~~~~~l~e~l~~~~--~~LlpiFFv~iGm~Idl~~L---~~~~~lilllvvllvv~K~l~v~l~~~l 922 (1173)
++++++|++++.....+ . ...+... .+..-+|++-+.+.-|...+ ...-+..+.+-+..+++-.++.++..++
T Consensus 2 l~~li~Gi~lG~~~~~~-~-~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~l 79 (191)
T PF03956_consen 2 LIALILGILLGYFLRPP-F-SLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLL 79 (191)
T ss_pred eeeHHHHHHHHHHhccc-c-cccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777766532211 1 1112332 33444454444443343332 2111224455556678888999999999
Q ss_pred cCCChhhhhhhhhcccCCcchhhHHHHHHHhhccchhhhHHHHHHH----HHHHHHHHHHHHh
Q 001051 923 FGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLL----VGISMALTPWLAA 981 (1173)
Q Consensus 923 ~g~~~real~lGl~LaprGevalvla~lAl~~giis~el~silvlv----VvlS~iItPiL~~ 981 (1173)
+++++++++.++.++.+.+..+..+... .+++.-++.+++ =+++.++.|++.|
T Consensus 80 l~~~~~~~lav~sG~GwYSlsg~~i~~~------~~~~~G~iafl~n~~RE~~a~~~~P~~~r 136 (191)
T PF03956_consen 80 LGLSLKESLAVASGFGWYSLSGVLITQL------YGPELGTIAFLSNLFREILAIILIPLLAR 136 (191)
T ss_pred hcCCHHHHHHHHccCcHHHhHHHHHHhh------hCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998877766655554431 122222333222 2445666788776
No 217
>PRK08264 short chain dehydrogenase; Validated
Probab=86.30 E-value=1.5 Score=47.64 Aligned_cols=73 Identities=11% Similarity=0.033 Sum_probs=55.2
Q ss_pred ccccccC-CCccHHHHHHHHHhCCC-CeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcC--ccccCEEEEecCC
Q 001051 1010 DHIILCG-FGRVGQIIAQLLSERLI-PFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVG--AERACAAAITLDT 1083 (1173)
Q Consensus 1010 ~hvIIiG-~G~~G~~Ia~~L~~~gi-~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~ag--I~~A~~VVi~t~D 1083 (1173)
+.++|.| .|.+|..+++.|.++|+ .|++++++++..+. ...+..++.+|.++++.++++- ....|.+|-...-
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag~ 83 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD-LGPRVVPLQLDVTDPASVAAAAEAASDVTILVNNAGI 83 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh-cCCceEEEEecCCCHHHHHHHHHhcCCCCEEEECCCc
Confidence 4567776 59999999999999998 99999999877654 2345778899999988876542 2346777665543
No 218
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=86.19 E-value=4.4 Score=49.84 Aligned_cols=72 Identities=25% Similarity=0.396 Sum_probs=54.7
Q ss_pred cccccCCCccHHHHHHHHHhC--CCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhh-------------cCccccC
Q 001051 1011 HIILCGFGRVGQIIAQLLSER--LIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHK-------------VGAERAC 1075 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~--gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~-------------agI~~A~ 1075 (1173)
.+.|+|.|.+|..++-.|.+. |++|+.+|.|+++++.+++.+.++. ++.-.+.+.+ ..+.+++
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~--e~gl~ell~~~~~~~l~~t~~~~~~i~~ad 80 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIY--EPGLDEVVKQCRGKNLFFSTDVEKHVAEAD 80 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccC--CCCHHHHHHHhhcCCEEEEcCHHHHHhcCC
Confidence 378899999999999999988 4789999999999999987765542 4444444322 1256799
Q ss_pred EEEEecCCC
Q 001051 1076 AAAITLDTP 1084 (1173)
Q Consensus 1076 ~VVi~t~Dd 1084 (1173)
.++++.+.+
T Consensus 81 vi~I~V~TP 89 (473)
T PLN02353 81 IVFVSVNTP 89 (473)
T ss_pred EEEEEeCCC
Confidence 999987644
No 219
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=86.02 E-value=2.5 Score=46.00 Aligned_cols=95 Identities=18% Similarity=0.247 Sum_probs=58.9
Q ss_pred cccccccCCCccHHHHHHHHHhCCC-CeEEecCC---chHHHh-------------------hhhC----CCCEEEecCC
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLI-PFVALDVR---SDRVAI-------------------GRAL----DLPVYFGDAG 1061 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi-~VvVID~D---~e~ve~-------------------l~~~----g~~vi~GDas 1061 (1173)
..+++|+|.|-.|..++..|...|+ +++++|.| +.++.+ +++. .+..+..+.+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~~i~ 100 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDEKIT 100 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeeeeCC
Confidence 4679999999999999999999999 59999999 433322 1110 1223334443
Q ss_pred CHHHHhhcCccccCEEEEecCCCcchHHHHHHHHhhCCCceEEE
Q 001051 1062 SREVLHKVGAERACAAAITLDTPGANYRTVWALSKYFPNVKTFV 1105 (1173)
Q Consensus 1062 d~e~Le~agI~~A~~VVi~t~Dd~~Ni~iv~~ar~l~p~~~IIa 1105 (1173)
+ +.+.++ +.++|.||-++++.+.-..+...+...++...+++
T Consensus 101 ~-~~~~~~-~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~ 142 (200)
T TIGR02354 101 E-ENIDKF-FKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIA 142 (200)
T ss_pred H-hHHHHH-hcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 3 223221 35789998887776544444444444444334444
No 220
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=85.91 E-value=1 Score=53.31 Aligned_cols=107 Identities=21% Similarity=0.190 Sum_probs=72.0
Q ss_pred cccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchHHH
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRT 1090 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni~i 1090 (1173)
.+.|+|.|..|+.++....+.|++|+++|.+++... ....-..+.+|..|.+.+.++- +.++.+ +.+.+..+...
T Consensus 4 ~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa--~~~ad~~~~~~~~D~~~l~~~a-~~~dvi--t~e~e~i~~~~ 78 (372)
T PRK06019 4 TIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPA--AQVADEVIVADYDDVAALRELA-EQCDVI--TYEFENVPAEA 78 (372)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCch--hHhCceEEecCCCCHHHHHHHH-hcCCEE--EeCcCCCCHHH
Confidence 578999999999999999999999999999876522 1122356779999999998763 467764 33333333333
Q ss_pred HHHHHh---hCCCceEEEEecChh-hHHHHHHCCCC
Q 001051 1091 VWALSK---YFPNVKTFVRAHDID-HGLNLEKAGAT 1122 (1173)
Q Consensus 1091 v~~ar~---l~p~~~IIara~d~e-~~~~L~~aGAd 1122 (1173)
...+.+ ..|+...+..+.|.. ....|+++|+.
T Consensus 79 l~~l~~~~~~~p~~~~~~~~~dK~~~k~~l~~~Gip 114 (372)
T PRK06019 79 LDALAARVPVPPGPDALAIAQDRLTEKQFLDKLGIP 114 (372)
T ss_pred HHHHhcCCeeCcCHHHHHHhcCHHHHHHHHHHCCCC
Confidence 332322 345555566666654 45566778876
No 221
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=85.88 E-value=5.8 Score=37.32 Aligned_cols=97 Identities=13% Similarity=0.176 Sum_probs=66.0
Q ss_pred eEEecCCchHHHhh----hhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcch-HHHHHHHHhhCCCceEEEEecC
Q 001051 1035 FVALDVRSDRVAIG----RALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN-YRTVWALSKYFPNVKTFVRAHD 1109 (1173)
Q Consensus 1035 VvVID~D~e~ve~l----~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~N-i~iv~~ar~l~p~~~IIara~d 1109 (1173)
|+++|.|+...+.+ +..|+..+..=.+..+.+..+.-...+.+++-...+..+ ..++..+|..+|++++|+.+.+
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~ 80 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDE 80 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESS
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEEeeeccccccccccccccccccccEEEecCC
Confidence 46777777665433 345552333333344556666666789988887665544 5678889999999999988855
Q ss_pred --hhhHHHHHHCCCCeeecCCcHH
Q 001051 1110 --IDHGLNLEKAGATAVVPETLEP 1131 (1173)
Q Consensus 1110 --~e~~~~L~~aGAd~VI~p~~~a 1131 (1173)
........++|++..+.-....
T Consensus 81 ~~~~~~~~~~~~g~~~~l~kp~~~ 104 (112)
T PF00072_consen 81 DDSDEVQEALRAGADDYLSKPFSP 104 (112)
T ss_dssp TSHHHHHHHHHTTESEEEESSSSH
T ss_pred CCHHHHHHHHHCCCCEEEECCCCH
Confidence 4577778899999888665433
No 222
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=85.83 E-value=33 Score=37.70 Aligned_cols=60 Identities=25% Similarity=0.245 Sum_probs=46.1
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHH
Q 001051 150 TDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVH 221 (1173)
Q Consensus 150 ~~~~~~~l~~~~~~~e~a~~~~~~~e~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~ 221 (1173)
+.++.+.|.++++.+..+..+..++|.+..+.-+.+--+++.|..|-..= +|-.|++|.+
T Consensus 32 ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g------------~edLAr~al~ 91 (221)
T PF04012_consen 32 IRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAG------------REDLAREALQ 91 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------------CHHHHHHHHH
Confidence 66788888999999999999999999998888888887777776664332 4556666655
No 223
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=85.82 E-value=1.7 Score=50.66 Aligned_cols=74 Identities=16% Similarity=0.080 Sum_probs=57.9
Q ss_pred cccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCE-EEecCCCHHHHhh-----cCccccCEEEEecCCC
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPV-YFGDAGSREVLHK-----VGAERACAAAITLDTP 1084 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~v-i~GDasd~e~Le~-----agI~~A~~VVi~t~Dd 1084 (1173)
.+.|+|.|.||..++..|.+.|++|.+.-+|++.++++.....+. |.++..-+..++. .-++++|.++++++..
T Consensus 3 kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs~ 82 (329)
T COG0240 3 KIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPSQ 82 (329)
T ss_pred eEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECChH
Confidence 567899999999999999999999999999999999887654333 5566666654321 1234599999999875
No 224
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=85.79 E-value=2.8 Score=47.77 Aligned_cols=114 Identities=18% Similarity=0.040 Sum_probs=70.1
Q ss_pred ccccccCCCccHHHHHHHHHhC--CCCeE-EecCCchHHHhhhhC-CCCEEEecCCCHHHHhhcCccccCEEEEecCCCc
Q 001051 1010 DHIILCGFGRVGQIIAQLLSER--LIPFV-ALDVRSDRVAIGRAL-DLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~--gi~Vv-VID~D~e~ve~l~~~-g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~ 1085 (1173)
-++-|+|+|.+|+.+++.|.+. +.+++ +.|+++++.+.+.+. |....+ .+.+.| +.+.|+|+++++++.
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~---~~~eel----l~~~D~Vvi~tp~~~ 79 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPV---VPLDQL----ATHADIVVEAAPASV 79 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCccc---CCHHHH----hcCCCEEEECCCcHH
Confidence 4688999999999999999863 66765 779999887665432 322222 233333 246899999999875
Q ss_pred chHHHHHHHHhhCCCceEEEEecC-----hhhHHHHHHCCCCeeecCCcHHHH
Q 001051 1086 ANYRTVWALSKYFPNVKTFVRAHD-----IDHGLNLEKAGATAVVPETLEPSL 1133 (1173)
Q Consensus 1086 ~Ni~iv~~ar~l~p~~~IIara~d-----~e~~~~L~~aGAd~VI~p~~~aa~ 1133 (1173)
. ...+..+-+.+. .+++.... .+..+..++.|....+.+-...+.
T Consensus 80 h-~e~~~~aL~aGk--~Vi~~s~gal~~~~~L~~~A~~~g~~l~v~sGa~~g~ 129 (271)
T PRK13302 80 L-RAIVEPVLAAGK--KAIVLSVGALLRNEDLIDLARQNGGQIIVPTGALLGL 129 (271)
T ss_pred H-HHHHHHHHHcCC--cEEEecchhHHhHHHHHHHHHHcCCEEEEcchHHHhH
Confidence 4 333333333443 45544322 233344466787766665544444
No 225
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=85.74 E-value=1.2 Score=51.81 Aligned_cols=73 Identities=12% Similarity=0.068 Sum_probs=54.6
Q ss_pred cccccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhh-----CCCCEEEecCCCHHHHhhcCccccCEEEEecC
Q 001051 1009 QDHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-----LDLPVYFGDAGSREVLHKVGAERACAAAITLD 1082 (1173)
Q Consensus 1009 k~hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~-----~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~ 1082 (1173)
...++|.| .|-+|..+++.|.++|++|++++++++....... .++.++.+|.++++.++++ +++.|.||-+..
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~Vih~A~ 88 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEA-VKGCDGVFHVAA 88 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHH-HcCCCEEEECCc
Confidence 34688888 5889999999999999999999888765443321 2466889999999888775 335677665553
No 226
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=85.72 E-value=7.5 Score=44.71 Aligned_cols=112 Identities=27% Similarity=0.314 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHHhhcccchhHHHHHhHhh-HHHHHHHHHHHHHhcccChhhhhhh--h--hhHH
Q 001051 828 TLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAP-YRGLLLGLFFMTVGMSIDPKLLLSN--F--PVIT 902 (1173)
Q Consensus 828 vLal~lg~~~lae~lGLS~vLGAFvAGLiLsn~~~~~~l~e~l~~-~~~~LlpiFFv~iGm~Idl~~L~~~--~--~lil 902 (1173)
-+.++|....++..+++||.+|-.+||++.+....+..-.+.+.+ +.++=..+....+|++.....+... | +..+
T Consensus 14 gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelGViLLmFgvGLhfslkdLLavk~iAipgAl 93 (408)
T COG4651 14 GLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELGVILLMFGVGLHFSLKDLLAVKAIAIPGAL 93 (408)
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhhHHHHHHhcchheeHHHHhhHHHHhcchHH
Confidence 356667777889999999999999999999853322222233332 3344444555678888888777652 1 2122
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhhcccCCcch
Q 001051 903 GALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEF 943 (1173)
Q Consensus 903 llvvllvv~K~l~v~l~~~l~g~~~real~lGl~LaprGev 943 (1173)
.-+.+ -..-.+...+..|+++-..+..|+.++.-+++
T Consensus 94 ~qia~----at~lg~gL~~~lgws~~~glvfGlaLS~aSTV 130 (408)
T COG4651 94 AQIAL----ATLLGMGLSSLLGWSFGTGIVFGLALSVASTV 130 (408)
T ss_pred HHHHH----HHHHHhHHHHHcCCCcccceeeeehhhhHHHH
Confidence 21111 12233445566788888888888876655543
No 227
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.71 E-value=1.8 Score=53.22 Aligned_cols=74 Identities=8% Similarity=0.004 Sum_probs=57.3
Q ss_pred ccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchHH
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYR 1089 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni~ 1089 (1173)
++++|+|.|..|...++.|...|.+|++.|.+++..+.+++.|..++.|+-. ++.+ .++|.||...+-+..|-.
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~-~~~l-----~~~D~VV~SpGi~~~~p~ 86 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDA-VQQI-----ADYALVVTSPGFRPTAPV 86 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcch-HhHh-----hcCCEEEECCCCCCCCHH
Confidence 4689999999999999999999999999998877777677778877665442 2223 457888888877765543
No 228
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=85.57 E-value=1.2 Score=50.74 Aligned_cols=39 Identities=26% Similarity=0.272 Sum_probs=35.4
Q ss_pred ccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhh
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIG 1048 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l 1048 (1173)
+++.|+|.|.+|..++..|...|++|+++|.+++.++.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~ 42 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNA 42 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHH
Confidence 458899999999999999999999999999999988654
No 229
>PRK07024 short chain dehydrogenase; Provisional
Probab=85.48 E-value=1 Score=49.74 Aligned_cols=72 Identities=15% Similarity=0.162 Sum_probs=54.1
Q ss_pred ccccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhC-----CCCEEEecCCCHHHHhhcC------ccccCEE
Q 001051 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL-----DLPVYFGDAGSREVLHKVG------AERACAA 1077 (1173)
Q Consensus 1010 ~hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~-----g~~vi~GDasd~e~Le~ag------I~~A~~V 1077 (1173)
++++|.| .+.+|..+++.|.++|..|++++++++..+...+. ....+.+|.++++.++++- ....|.+
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id~l 82 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPDVV 82 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCCEE
Confidence 4567776 67899999999999999999999998877655332 4667889999988775531 1235777
Q ss_pred EEec
Q 001051 1078 AITL 1081 (1173)
Q Consensus 1078 Vi~t 1081 (1173)
|-..
T Consensus 83 v~~a 86 (257)
T PRK07024 83 IANA 86 (257)
T ss_pred EECC
Confidence 7654
No 230
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=85.32 E-value=1.5 Score=50.24 Aligned_cols=119 Identities=12% Similarity=-0.014 Sum_probs=69.1
Q ss_pred cccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCH--HHHhhcCccccCEEEEecCCCcc
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSR--EVLHKVGAERACAAAITLDTPGA 1086 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~--e~Le~agI~~A~~VVi~t~Dd~~ 1086 (1173)
...++|+|.|.+|..+++.|++.|+.+.+++.|...-...+..... ..++ .......+..+|.||++++-...
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lg-----v~d~~~~~~~~~~~~~aD~VivavPi~~~ 77 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELG-----VIDELTVAGLAEAAAEADLVIVAVPIEAT 77 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcC-----cccccccchhhhhcccCCEEEEeccHHHH
Confidence 4578999999999999999999999998888776654333322221 2222 12223445679999999988643
Q ss_pred hHHHHHHHHhhCCCceEEEEecC--hhhHHHHHHCCCC--eeecCCcHHHH
Q 001051 1087 NYRTVWALSKYFPNVKTFVRAHD--IDHGLNLEKAGAT--AVVPETLEPSL 1133 (1173)
Q Consensus 1087 Ni~iv~~ar~l~p~~~IIara~d--~e~~~~L~~aGAd--~VI~p~~~aa~ 1133 (1173)
.-.+...+..+-++ .++.-+.+ ..-.+.+++.+.+ ++|.-+-.+|.
T Consensus 78 ~~~l~~l~~~l~~g-~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~ 127 (279)
T COG0287 78 EEVLKELAPHLKKG-AIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGP 127 (279)
T ss_pred HHHHHHhcccCCCC-CEEEecccccHHHHHHHHHhccCCCeeEecCCCCCC
Confidence 33333333333333 24443333 2333444444444 45544334443
No 231
>PRK09903 putative transporter YfdV; Provisional
Probab=85.32 E-value=80 Score=36.62 Aligned_cols=133 Identities=11% Similarity=-0.030 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHhhcc--cchhHHHHHhHhhHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 001051 845 SMALGAFLAGLLLAE--TEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRL 922 (1173)
Q Consensus 845 S~vLGAFvAGLiLsn--~~~~~~l~e~l~~~~~~LlpiFFv~iGm~Idl~~L~~~~~lilllvvllvv~K~l~v~l~~~l 922 (1173)
+|.+-+.++|+++.- -+....+.+.++.+.+...|+-.+.+|+.+....+...+. .....++.++.-++.++.....
T Consensus 173 nP~iia~~~gl~~~l~~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~~~-~~~~~~~Kli~~P~i~~~~~~~ 251 (314)
T PRK09903 173 EPVVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFSAE-IAYNTFLKLILMPLALLLVGMA 251 (314)
T ss_pred chHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555554432 3445567777777888889999999999885543322222 2233344555556666666666
Q ss_pred cCCChhhhhhhhhc--ccCCcchhhHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHhh
Q 001051 923 FGVSVISAIRTGLL--LAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGISMALTPWLAAG 982 (1173)
Q Consensus 923 ~g~~~real~lGl~--LaprGevalvla~lAl~~giis~el~silvlvVvlS~iItPiL~~~ 982 (1173)
++++..... .... -.|-+.... ..+.+.+.-.+.....+.+..+++.+.-|+....
T Consensus 252 ~~l~~~~~~-v~vl~aa~P~a~~~~---i~A~~y~~~~~~aa~~v~~sTlls~iTlpl~~~l 309 (314)
T PRK09903 252 CHLNSEHLQ-MMVLAGALPPAFSGI---IIASRFNVYTRTGTASLAVSVLGFVVTAPLWIYV 309 (314)
T ss_pred cCCCcHHHH-HHHHHHcccHHHHHH---HHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 676543222 2221 234443333 3344555433333444555566776667776543
No 232
>PRK07060 short chain dehydrogenase; Provisional
Probab=85.26 E-value=1.3 Score=48.21 Aligned_cols=73 Identities=14% Similarity=0.054 Sum_probs=56.5
Q ss_pred ccccccCC-CccHHHHHHHHHhCCCCeEEecCCchHHHhhhh-CCCCEEEecCCCHHHHhhcC--ccccCEEEEecC
Q 001051 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-LDLPVYFGDAGSREVLHKVG--AERACAAAITLD 1082 (1173)
Q Consensus 1010 ~hvIIiG~-G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~-~g~~vi~GDasd~e~Le~ag--I~~A~~VVi~t~ 1082 (1173)
+.++|.|. |.+|..+++.|.++|++|++++++++..+.+.+ .+..++.+|.++++.++++- ....|.+|-...
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi~~ag 86 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLVNCAG 86 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEEECCC
Confidence 46778886 789999999999999999999999887766543 36778899999988765541 234677776553
No 233
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=85.24 E-value=2.2 Score=46.30 Aligned_cols=88 Identities=19% Similarity=0.130 Sum_probs=59.9
Q ss_pred cccccccCCCccHHHHHHHHHhCCC-CeEEecCCc-------------------hHHH----hhhhC--CCC--EEEecC
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLI-PFVALDVRS-------------------DRVA----IGRAL--DLP--VYFGDA 1060 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi-~VvVID~D~-------------------e~ve----~l~~~--g~~--vi~GDa 1060 (1173)
+.+++|+|.|.+|..+++.|...|. +++++|.|. .+++ ++++. +.. .+..+.
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i 100 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKERV 100 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhcC
Confidence 4579999999999999999999997 899999993 1221 22222 122 222333
Q ss_pred CCHHHHhhcCccccCEEEEecCCCcchHHHHHHHHhhC
Q 001051 1061 GSREVLHKVGAERACAAAITLDTPGANYRTVWALSKYF 1098 (1173)
Q Consensus 1061 sd~e~Le~agI~~A~~VVi~t~Dd~~Ni~iv~~ar~l~ 1098 (1173)
.+ +.+.+ -+.++|.||.++++...-..+...+++.+
T Consensus 101 ~~-~~~~~-~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ 136 (202)
T TIGR02356 101 TA-ENLEL-LINNVDLVLDCTDNFATRYLINDACVALG 136 (202)
T ss_pred CH-HHHHH-HHhCCCEEEECCCCHHHHHHHHHHHHHcC
Confidence 32 33332 25689999999888776667777777765
No 234
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.19 E-value=3.9 Score=46.42 Aligned_cols=36 Identities=28% Similarity=0.307 Sum_probs=33.9
Q ss_pred cccccCCCccHHHHHHHHHhCCCCeEEecCCchHHH
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVA 1046 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve 1046 (1173)
++.|+|.|.+|..++..|...|++|+++|.|++.++
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~ 40 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVD 40 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHH
Confidence 588999999999999999999999999999999885
No 235
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=85.03 E-value=11 Score=42.19 Aligned_cols=156 Identities=17% Similarity=0.147 Sum_probs=93.7
Q ss_pred cHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001051 150 TDELRELLMNAMKELEVAQLN-STMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALS 228 (1173)
Q Consensus 150 ~~~~~~~l~~~~~~~e~a~~~-~~~~e~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~ 228 (1173)
|-.--+-+.+-.++|+.||-. +...-+-.+++.+.+=-|-.-...|+-=.+ ....-.+.-.+=-.|....++|.-+..
T Consensus 16 LN~atd~IN~lE~~L~~ar~~fr~~l~e~~~kL~~~~kkLg~~I~karPYye-a~~~a~~aq~e~q~Aa~~yerA~~~h~ 94 (239)
T PF05276_consen 16 LNQATDEINRLENELDEARATFRRLLSESTKKLNELAKKLGSCIEKARPYYE-ARRKAKEAQQEAQKAALQYERANSMHA 94 (239)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344566677788888876 445555556666555555444333322222 000111111111235555566666666
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHH
Q 001051 229 LAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRL 308 (1173)
Q Consensus 229 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~ 308 (1173)
.|+..+.+|.+++....+ -+-...-.|.|--|-..+.+.+..-..+|.+-++...+-.++.++|-.|
T Consensus 95 aAKe~v~laEq~l~~~~~-------------~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~~~~~~ae~~v~~L 161 (239)
T PF05276_consen 95 AAKEMVALAEQSLMSDSN-------------WTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQRRARIYNEAEQRVQQL 161 (239)
T ss_pred HHHHHHHHHHHHHhcCCc-------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666655110 0112235678899999999999999999999998888888888888888
Q ss_pred HHHHHHHHHHH
Q 001051 309 NEVAEKAQMNA 319 (1173)
Q Consensus 309 ~~~~~~~~~~~ 319 (1173)
...-.++=.++
T Consensus 162 ek~lkr~I~KS 172 (239)
T PF05276_consen 162 EKKLKRAIKKS 172 (239)
T ss_pred HHHHHHHHHhh
Confidence 87666554443
No 236
>PLN02650 dihydroflavonol-4-reductase
Probab=85.00 E-value=0.97 Score=52.55 Aligned_cols=72 Identities=14% Similarity=0.118 Sum_probs=53.0
Q ss_pred cccccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhh--------CCCCEEEecCCCHHHHhhcCccccCEEEE
Q 001051 1009 QDHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA--------LDLPVYFGDAGSREVLHKVGAERACAAAI 1079 (1173)
Q Consensus 1009 k~hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~--------~g~~vi~GDasd~e~Le~agI~~A~~VVi 1079 (1173)
+++++|.| .|-+|..+++.|.++|++|++++++++....... ..+.++.||.++++.++++ +.+++.|+-
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~-~~~~d~ViH 83 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDA-IRGCTGVFH 83 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHH-HhCCCEEEE
Confidence 34677777 5899999999999999999998888655433211 1356789999999888765 345677665
Q ss_pred ec
Q 001051 1080 TL 1081 (1173)
Q Consensus 1080 ~t 1081 (1173)
+.
T Consensus 84 ~A 85 (351)
T PLN02650 84 VA 85 (351)
T ss_pred eC
Confidence 43
No 237
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=84.90 E-value=12 Score=44.03 Aligned_cols=107 Identities=14% Similarity=0.103 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCchH--HHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcCChhHHHhchhh
Q 001051 606 VLWLLLASVIFVPIFQKIPGGSPV--LGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKY 683 (1173)
Q Consensus 606 l~lLLl~A~ilg~L~~Rl~~lP~I--vG~LLaGILLGP~gLgli~~~~~~~~LaeLGL~~LLF~aGLEldl~~Lrr~~k~ 683 (1173)
+.++..++.+.+.+.+++ |+|.. .+-++.|.++.-.+ ..+...+..+..++-.++--.+|.++|...++...|.
T Consensus 190 ~~~l~~~~~~~g~l~~~l-r~Pa~~ll~~l~l~a~v~~~~---~~~~~lP~wl~~va~~~iG~~IG~~f~~~~l~~~~r~ 265 (352)
T COG3180 190 LLLLILAALLGGLLGKLL-RFPAPTLLGPLLLGAIVHFGG---GITIQLPAWLLAVAQALIGALIGSRFDRSILREAKRL 265 (352)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhhccc---ceeeeCCHHHHHHHHHHHHHHHcccccHHHHHHhHhh
Confidence 555556677777777777 77743 34444444443222 1234556777788889999999999999988877664
Q ss_pred HH--HHHHHHHHHHHHHHHHHHHHHhCCChHHHHH
Q 001051 684 VF--GLGSAQVLVTAVVVGLVAHFVSGLPGPASIV 716 (1173)
Q Consensus 684 il--~La~~~vllt~~~vgll~~~llGls~~~ALl 716 (1173)
.. .+.++...+..+..+++.+++.|.++.++++
T Consensus 266 ~~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~ta~L 300 (352)
T COG3180 266 LPAILVSIIALMAIAAGMAGLLSWLTGIDLNTAYL 300 (352)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 33 3334444444455677778888999987765
No 238
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=84.84 E-value=1.1e+02 Score=42.17 Aligned_cols=93 Identities=18% Similarity=0.277 Sum_probs=51.8
Q ss_pred HhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHhhhcccHH
Q 001051 273 AENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVA-FEIEATQRVNDAE 351 (1173)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~a~~~~~~~m~~ae~av~-~e~e~~~~~~~~~ 351 (1173)
.++.+..++..+..|+++.+.++......+++++.+++...+++..-.+++.++.+...-.++.-. .+-+..+|-...+
T Consensus 605 L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 684 (1201)
T PF12128_consen 605 LRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIE 684 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666666666666666666666666666666666666665544333221 1222233444555
Q ss_pred HHHHHHHHhhcCCC
Q 001051 352 IALQRAEKSLSNSS 365 (1173)
Q Consensus 352 ~~~~~~~~~~~~~~ 365 (1173)
.++++++..+..++
T Consensus 685 ~~l~~l~~~l~~~~ 698 (1201)
T PF12128_consen 685 EQLNELEEELKQLK 698 (1201)
T ss_pred HHHHHHHHHHHHHH
Confidence 56666666555554
No 239
>PRK05884 short chain dehydrogenase; Provisional
Probab=84.83 E-value=1.3 Score=48.27 Aligned_cols=69 Identities=14% Similarity=0.189 Sum_probs=53.0
Q ss_pred ccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhh-hCCCCEEEecCCCHHHHhhcCc---cccCEEEEe
Q 001051 1012 IILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGR-ALDLPVYFGDAGSREVLHKVGA---ERACAAAIT 1080 (1173)
Q Consensus 1012 vIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~-~~g~~vi~GDasd~e~Le~agI---~~A~~VVi~ 1080 (1173)
++|.| .+.+|+.+++.|.++|++|++++++++..+... +.+..++.+|.++++.++++-- ++.|.+|-.
T Consensus 3 vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~id~lv~~ 76 (223)
T PRK05884 3 VLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKELDVDAIVCDNTDPASLEEARGLFPHHLDTIVNV 76 (223)
T ss_pred EEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCcEEecCCCCHHHHHHHHHHHhhcCcEEEEC
Confidence 55665 588999999999999999999999988876553 3367888999999998765421 145666643
No 240
>PRK10698 phage shock protein PspA; Provisional
Probab=84.72 E-value=66 Score=35.80 Aligned_cols=36 Identities=8% Similarity=0.145 Sum_probs=18.3
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 001051 150 TDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAA 185 (1173)
Q Consensus 150 ~~~~~~~l~~~~~~~e~a~~~~~~~e~~~~~~~~~a 185 (1173)
+.++++-|.+++..+..+-.....+|.+..+.-..+
T Consensus 33 i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~ 68 (222)
T PRK10698 33 IQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQ 68 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555444443333
No 241
>PRK06482 short chain dehydrogenase; Provisional
Probab=84.57 E-value=1.3 Score=49.52 Aligned_cols=72 Identities=18% Similarity=0.050 Sum_probs=56.1
Q ss_pred ccccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhh---CCCCEEEecCCCHHHHhhc------CccccCEEEE
Q 001051 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA---LDLPVYFGDAGSREVLHKV------GAERACAAAI 1079 (1173)
Q Consensus 1010 ~hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~---~g~~vi~GDasd~e~Le~a------gI~~A~~VVi 1079 (1173)
+.++|.| .|.+|..+++.|.+.|++|++++++++..+.+.+ .+..++.+|.++.+.++++ .....+.+|-
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~ 82 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAALGRIDVVVS 82 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4577777 5789999999999999999999999888776643 2567789999999887653 1235677776
Q ss_pred ec
Q 001051 1080 TL 1081 (1173)
Q Consensus 1080 ~t 1081 (1173)
..
T Consensus 83 ~a 84 (276)
T PRK06482 83 NA 84 (276)
T ss_pred CC
Confidence 54
No 242
>PRK06914 short chain dehydrogenase; Provisional
Probab=84.54 E-value=1.3 Score=49.34 Aligned_cols=73 Identities=12% Similarity=0.058 Sum_probs=53.9
Q ss_pred ccccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhh--------CCCCEEEecCCCHHHHhhc-----CccccC
Q 001051 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA--------LDLPVYFGDAGSREVLHKV-----GAERAC 1075 (1173)
Q Consensus 1010 ~hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~--------~g~~vi~GDasd~e~Le~a-----gI~~A~ 1075 (1173)
+.++|+| .|.+|..+++.|.++|+.|++++++++..+...+ ....++.+|.+|++.++++ .....+
T Consensus 4 k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id 83 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGRID 83 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCCee
Confidence 4567777 5889999999999999999999998876544321 2456788999999987651 112457
Q ss_pred EEEEecC
Q 001051 1076 AAAITLD 1082 (1173)
Q Consensus 1076 ~VVi~t~ 1082 (1173)
.+|-..+
T Consensus 84 ~vv~~ag 90 (280)
T PRK06914 84 LLVNNAG 90 (280)
T ss_pred EEEECCc
Confidence 7776654
No 243
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=84.52 E-value=93 Score=36.72 Aligned_cols=131 Identities=17% Similarity=0.075 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHhhcccch------hHHHHHhHhhHHHHHHHHHHHHHhcccChhhhhh--hhhhHHHHHHHHHHHHHHHH
Q 001051 845 SMALGAFLAGLLLAETEF------SLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLS--NFPVITGALGLLIGGKTILV 916 (1173)
Q Consensus 845 S~vLGAFvAGLiLsn~~~------~~~l~e~l~~~~~~LlpiFFv~iGm~Idl~~L~~--~~~lilllvvllvv~K~l~v 916 (1173)
+|.+=+.++|++++-.+. ..-+.+.+..+.....|+-.+.+|+.+....... .+......+++.+++-++.+
T Consensus 244 nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~ 323 (385)
T PF03547_consen 244 NPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLIG 323 (385)
T ss_pred CcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHH
Confidence 566677777777765431 2455566666778889999999999886543221 22333344666777777778
Q ss_pred HHHHHhcCCChhhhhhhhh-cccCCcchhhHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHH
Q 001051 917 ALVGRLFGVSVISAIRTGL-LLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGISMALTPW 978 (1173)
Q Consensus 917 ~l~~~l~g~~~real~lGl-~LaprGevalvla~lAl~~giis~el~silvlvVvlS~iItPi 978 (1173)
+...++++++......+-+ .-.|-+.. ...++..++.-.+..-..+++..+++.+..|+
T Consensus 324 ~~~~~~~~l~~~~~~~~~~~~~~P~a~~---~~~~a~~~~~~~~~~s~~~~~~~~~~~~~~~~ 383 (385)
T PF03547_consen 324 IGIVFLLGLDGDMARVLILQAAMPTAIN---SFVIASLYGLDEEEASSIVFWSTLLSIPTLPL 383 (385)
T ss_pred HHHHHHHCCCHHHHHHHHHhccCCchHH---HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877765443222211 22344333 23333444443444445555555555555554
No 244
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=84.44 E-value=3.9 Score=41.21 Aligned_cols=114 Identities=13% Similarity=0.063 Sum_probs=70.0
Q ss_pred cccccccCCCccHHHHHHHHHhCCC-CeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcch
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLI-PFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi-~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~N 1087 (1173)
+.+++|+|.|.+|..+++.|...|+ +++++|.|.-....+... .-....+. .....
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~-----------------~~~~~~~v------G~~Ka 58 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQ-----------------FLYTEEDV------GKNKA 58 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTC-----------------TTS-GGGT------TSBHH
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccc-----------------cccccccc------hhHHH
Confidence 3578999999999999999999998 699999885443322111 01111111 11234
Q ss_pred HHHHHHHHhhCCCceEEEEecCh--hhHHHHHHCCCCeeecCC-cHHHHHHHHHHHHhcCCC
Q 001051 1088 YRTVWALSKYFPNVKTFVRAHDI--DHGLNLEKAGATAVVPET-LEPSLQLAAAVLAQAKLP 1146 (1173)
Q Consensus 1088 i~iv~~ar~l~p~~~IIara~d~--e~~~~L~~aGAd~VI~p~-~~aa~~LA~~vl~~l~~~ 1146 (1173)
..+...+++.+|.+++.+...+. +....+- .+.|.||.-. ........+......++|
T Consensus 59 ~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~-~~~d~vi~~~d~~~~~~~l~~~~~~~~~p 119 (135)
T PF00899_consen 59 EAAKERLQEINPDVEVEAIPEKIDEENIEELL-KDYDIVIDCVDSLAARLLLNEICREYGIP 119 (135)
T ss_dssp HHHHHHHHHHSTTSEEEEEESHCSHHHHHHHH-HTSSEEEEESSSHHHHHHHHHHHHHTT-E
T ss_pred HHHHHHHHHhcCceeeeeeecccccccccccc-cCCCEEEEecCCHHHHHHHHHHHHHcCCC
Confidence 55777889999998888766655 3333333 3788888533 344555555555554443
No 245
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=84.42 E-value=2 Score=43.62 Aligned_cols=86 Identities=13% Similarity=0.076 Sum_probs=55.1
Q ss_pred cccccCCCccHHHHHHHHHhCCC-CeEEecCCchHHH-----------------------hhhhCC----CCEEEecCCC
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLI-PFVALDVRSDRVA-----------------------IGRALD----LPVYFGDAGS 1062 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi-~VvVID~D~e~ve-----------------------~l~~~g----~~vi~GDasd 1062 (1173)
+++|+|.|.+|..+++.|...|+ +++++|.|.-... ++++.+ ...+..+..+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 47899999999999999999998 6999998832111 111111 1233344443
Q ss_pred HHHHhhcCccccCEEEEecCCCcchHHHHHHHHhhC
Q 001051 1063 REVLHKVGAERACAAAITLDTPGANYRTVWALSKYF 1098 (1173)
Q Consensus 1063 ~e~Le~agI~~A~~VVi~t~Dd~~Ni~iv~~ar~l~ 1098 (1173)
.... .-+.+++.||.++++...-..+...+++.+
T Consensus 81 ~~~~--~~~~~~diVi~~~d~~~~~~~l~~~~~~~~ 114 (143)
T cd01483 81 DNLD--DFLDGVDLVIDAIDNIAVRRALNRACKELG 114 (143)
T ss_pred hhHH--HHhcCCCEEEECCCCHHHHHHHHHHHHHcC
Confidence 3321 223577888877777655566666677654
No 246
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.33 E-value=2.5 Score=51.74 Aligned_cols=75 Identities=13% Similarity=0.035 Sum_probs=54.5
Q ss_pred cccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHh-hhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcch
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAI-GRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~-l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~N 1087 (1173)
.+++.|+|.|..|..+++.|.+.|..|++.|+++..... +.+.|..++.|+-. ++ ++.+++.||....-+..|
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~-~~-----~~~~~d~vV~Spgi~~~~ 88 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEA-SD-----QLDSFSLVVTSPGWRPDS 88 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCc-hh-----HhcCCCEEEeCCCCCCCC
Confidence 356899999999999999999999999999987665443 34558877776322 22 224678888776666555
Q ss_pred HH
Q 001051 1088 YR 1089 (1173)
Q Consensus 1088 i~ 1089 (1173)
-.
T Consensus 89 p~ 90 (473)
T PRK00141 89 PL 90 (473)
T ss_pred HH
Confidence 33
No 247
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=83.87 E-value=5.3 Score=48.66 Aligned_cols=110 Identities=15% Similarity=0.055 Sum_probs=72.5
Q ss_pred cccccccCCCccHHHHHHHHHhCCCCeEEecCCchH----HHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCC
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDR----VAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~----ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd 1084 (1173)
..++.|+|+|.-|..+++.|.++|.+|++.|.++.. ...+...+..+..|.-.+ .....+|.||..-+-+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~------~~~~~~d~vV~SPGi~ 80 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDD------EDLAEFDLVVKSPGIP 80 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccch------hccccCCEEEECCCCC
Confidence 567999999999999999999999999999988766 223335677777765544 3355677877766665
Q ss_pred cchHHHHHHHHhh--------------CCCceEEEEecC-------hhhHHHHHHCCCCeee
Q 001051 1085 GANYRTVWALSKY--------------FPNVKTFVRAHD-------IDHGLNLEKAGATAVV 1125 (1173)
Q Consensus 1085 ~~Ni~iv~~ar~l--------------~p~~~IIara~d-------~e~~~~L~~aGAd~VI 1125 (1173)
-.+- ++..+++. .+..++|+.+-+ .--.+.|++.|.+..+
T Consensus 81 ~~~p-~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~l 141 (448)
T COG0771 81 PTHP-LVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALL 141 (448)
T ss_pred CCCH-HHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCcee
Confidence 4444 22333222 123456665543 3345667777766543
No 248
>PRK12828 short chain dehydrogenase; Provisional
Probab=83.83 E-value=1.9 Score=46.44 Aligned_cols=72 Identities=17% Similarity=0.065 Sum_probs=53.2
Q ss_pred cccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHH----hhhhCCCCEEEecCCCHHHHhhcC------ccccCEEEE
Q 001051 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVA----IGRALDLPVYFGDAGSREVLHKVG------AERACAAAI 1079 (1173)
Q Consensus 1011 hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve----~l~~~g~~vi~GDasd~e~Le~ag------I~~A~~VVi 1079 (1173)
.++|.| .|.+|..+++.|.++|++|+++++|++... .+...+..++.+|..+.+.++++- ....+.|+-
T Consensus 9 ~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~ 88 (239)
T PRK12828 9 VVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQFGRLDALVN 88 (239)
T ss_pred EEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHHhCCcCEEEE
Confidence 456665 589999999999999999999999876533 334456788899999988776531 125677766
Q ss_pred ecC
Q 001051 1080 TLD 1082 (1173)
Q Consensus 1080 ~t~ 1082 (1173)
...
T Consensus 89 ~ag 91 (239)
T PRK12828 89 IAG 91 (239)
T ss_pred CCc
Confidence 543
No 249
>COG5420 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=83.81 E-value=3.1 Score=36.85 Aligned_cols=52 Identities=37% Similarity=0.441 Sum_probs=39.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHh-hhH---HHHHHHHHHHHHHHH--HHHHHhhh
Q 001051 295 QSKKEELQKEVDRLNEVAEKAQMNAL-KAE---EDVANIMLLAEQAVA--FEIEATQR 346 (1173)
Q Consensus 295 ~~~~~~~q~~~~~~~~~~~~~~~~~~-~a~---~~~~~~m~~ae~av~--~e~e~~~~ 346 (1173)
-+..+|+||+|.|||-.|..|.|+-- .|| -+-..||-.||.+.+ .||.+++|
T Consensus 5 ms~l~eiqkKvrkLqsrAg~akm~LhDLAEgLP~~wtei~~VA~kt~~~yaeLD~~k~ 62 (71)
T COG5420 5 MSSLEEIQKKVRKLQSRAGQAKMELHDLAEGLPVKWTEIMAVAEKTFEAYAELDAAKR 62 (71)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHHHhccCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999854 344 356889999998754 46666544
No 250
>PLN02686 cinnamoyl-CoA reductase
Probab=83.80 E-value=1.5 Score=51.83 Aligned_cols=69 Identities=12% Similarity=0.014 Sum_probs=50.2
Q ss_pred cccccccCC-CccHHHHHHHHHhCCCCeEEecCCchHHHhhhh-----------CCCCEEEecCCCHHHHhhcCccccCE
Q 001051 1009 QDHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-----------LDLPVYFGDAGSREVLHKVGAERACA 1076 (1173)
Q Consensus 1009 k~hvIIiG~-G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~-----------~g~~vi~GDasd~e~Le~agI~~A~~ 1076 (1173)
.+.++|.|. |-+|..+++.|.++|++|+++.++.+..+.+.. .+..++.||.+|++.+.++ +.+++.
T Consensus 53 ~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~-i~~~d~ 131 (367)
T PLN02686 53 ARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEA-FDGCAG 131 (367)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHH-HHhccE
Confidence 456777775 899999999999999999887777655443322 1466788999999988764 334555
Q ss_pred EE
Q 001051 1077 AA 1078 (1173)
Q Consensus 1077 VV 1078 (1173)
|+
T Consensus 132 V~ 133 (367)
T PLN02686 132 VF 133 (367)
T ss_pred EE
Confidence 44
No 251
>PRK07074 short chain dehydrogenase; Provisional
Probab=83.73 E-value=2 Score=47.24 Aligned_cols=72 Identities=17% Similarity=0.090 Sum_probs=54.6
Q ss_pred cccccCC-CccHHHHHHHHHhCCCCeEEecCCchHHHhhhh----CCCCEEEecCCCHHHHhhcCc------cccCEEEE
Q 001051 1011 HIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA----LDLPVYFGDAGSREVLHKVGA------ERACAAAI 1079 (1173)
Q Consensus 1011 hvIIiG~-G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~----~g~~vi~GDasd~e~Le~agI------~~A~~VVi 1079 (1173)
.++|.|. +.+|..+++.|.++|.+|++++++++..+.+.+ ....++.+|..+++.+.++-- ...|.+|-
T Consensus 4 ~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi~ 83 (257)
T PRK07074 4 TALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALGDARFVPVACDLTDAASLAAALANAAAERGPVDVLVA 83 (257)
T ss_pred EEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4566664 889999999999999999999999887654432 346678999999998864321 24678777
Q ss_pred ecC
Q 001051 1080 TLD 1082 (1173)
Q Consensus 1080 ~t~ 1082 (1173)
...
T Consensus 84 ~ag 86 (257)
T PRK07074 84 NAG 86 (257)
T ss_pred CCC
Confidence 764
No 252
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=83.69 E-value=5.3 Score=46.26 Aligned_cols=131 Identities=20% Similarity=0.207 Sum_probs=75.6
Q ss_pred cccccCCCccHHHHHHHHHhCCC-CeEEecCCchHHH-hhh---hCC----CC-EEEecCCCHHHHhhcCccccCEEEEe
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLI-PFVALDVRSDRVA-IGR---ALD----LP-VYFGDAGSREVLHKVGAERACAAAIT 1080 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi-~VvVID~D~e~ve-~l~---~~g----~~-vi~GDasd~e~Le~agI~~A~~VVi~ 1080 (1173)
.+.|+|.|.+|..++..|..+|+ +|+++|.+++..+ ... +.+ .. -+... .| ++. +.++|.||++
T Consensus 3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t-~d---~~~--~~~aDiVIit 76 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGT-NN---YAD--TANSDIVVIT 76 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEec-CC---HHH--hCCCCEEEEc
Confidence 57899999999999999999876 8999999876433 111 111 11 12110 11 222 5789999999
Q ss_pred cCCCc-----------chHHHHH----HHHhhCCCceEEEEecChh-hH-HHHHHCCC--CeeecCC-cHHHHHHHHHHH
Q 001051 1081 LDTPG-----------ANYRTVW----ALSKYFPNVKTFVRAHDID-HG-LNLEKAGA--TAVVPET-LEPSLQLAAAVL 1140 (1173)
Q Consensus 1081 t~Dd~-----------~Ni~iv~----~ar~l~p~~~IIara~d~e-~~-~~L~~aGA--d~VI~p~-~~aa~~LA~~vl 1140 (1173)
.+.+. .|..+.. .+++..|+..+++-++=.+ .. ...+..|. .+||--. ..-+.++-+.+.
T Consensus 77 ag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~lds~R~~~~la 156 (305)
T TIGR01763 77 AGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLDSARFRTFIA 156 (305)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchHHHHHHHHHH
Confidence 98431 4655444 4666778865554444222 22 22234343 4566442 344445555555
Q ss_pred HhcCCCH
Q 001051 1141 AQAKLPA 1147 (1173)
Q Consensus 1141 ~~l~~~~ 1147 (1173)
..++++.
T Consensus 157 ~~l~v~~ 163 (305)
T TIGR01763 157 MELGVSV 163 (305)
T ss_pred HHhCcCH
Confidence 5555444
No 253
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=83.56 E-value=3.5 Score=44.47 Aligned_cols=71 Identities=14% Similarity=0.056 Sum_probs=61.0
Q ss_pred cccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCC
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd 1084 (1173)
-.||+-.|..|..|.++..++|++|+.|-+|+.+.... .+..++.+|..|++.+ .-.+..-|+||.+.+-.
T Consensus 3 IaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~--~~~~i~q~Difd~~~~-a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 3 IAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR--QGVTILQKDIFDLTSL-ASDLAGHDAVISAFGAG 73 (211)
T ss_pred EEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc--ccceeecccccChhhh-HhhhcCCceEEEeccCC
Confidence 35677899999999999999999999999999987644 6888999999999998 45678899999887554
No 254
>PRK08265 short chain dehydrogenase; Provisional
Probab=83.56 E-value=1.5 Score=48.81 Aligned_cols=72 Identities=15% Similarity=0.058 Sum_probs=53.6
Q ss_pred ccccccCC-CccHHHHHHHHHhCCCCeEEecCCchHHHhhhhC---CCCEEEecCCCHHHHhhcC------ccccCEEEE
Q 001051 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL---DLPVYFGDAGSREVLHKVG------AERACAAAI 1079 (1173)
Q Consensus 1010 ~hvIIiG~-G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~---g~~vi~GDasd~e~Le~ag------I~~A~~VVi 1079 (1173)
+.++|.|. +.+|+.+++.|.++|.+|++++++++..+.+.+. ...++.+|.++++.++++- ....|.+|-
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~lv~ 86 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRVDILVN 86 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 45677764 8899999999999999999999998766555322 3567889999998775531 125677765
Q ss_pred ec
Q 001051 1080 TL 1081 (1173)
Q Consensus 1080 ~t 1081 (1173)
..
T Consensus 87 ~a 88 (261)
T PRK08265 87 LA 88 (261)
T ss_pred CC
Confidence 54
No 255
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=83.56 E-value=1.1 Score=50.89 Aligned_cols=71 Identities=13% Similarity=0.055 Sum_probs=52.7
Q ss_pred ccccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHH---hhh-----hCCCCEEEecCCCHHHHhhcCccccCEEEEe
Q 001051 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVA---IGR-----ALDLPVYFGDAGSREVLHKVGAERACAAAIT 1080 (1173)
Q Consensus 1010 ~hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve---~l~-----~~g~~vi~GDasd~e~Le~agI~~A~~VVi~ 1080 (1173)
+.++|.| .|-+|..+++.|.++|++|++++++++... .+. .....++.||..+++.+.++ ++++|+||-+
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~d~Vih~ 83 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSV-VDGCEGVFHT 83 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHH-HcCCCEEEEe
Confidence 3578888 599999999999999999999888765322 211 12456889999999888765 3457777665
Q ss_pred c
Q 001051 1081 L 1081 (1173)
Q Consensus 1081 t 1081 (1173)
.
T Consensus 84 A 84 (322)
T PLN02662 84 A 84 (322)
T ss_pred C
Confidence 4
No 256
>PRK06101 short chain dehydrogenase; Provisional
Probab=83.49 E-value=1.8 Score=47.46 Aligned_cols=59 Identities=8% Similarity=0.039 Sum_probs=48.6
Q ss_pred cccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhC--CCCEEEecCCCHHHHhhc
Q 001051 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL--DLPVYFGDAGSREVLHKV 1069 (1173)
Q Consensus 1011 hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~--g~~vi~GDasd~e~Le~a 1069 (1173)
.++|.| .|.+|..+++.|.++|++|+++++++++.+.+.+. ...++.+|.++++.++++
T Consensus 3 ~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 64 (240)
T PRK06101 3 AVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQSANIFTLAFDVTDHPGTKAA 64 (240)
T ss_pred EEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCCCeEEEeeCCCHHHHHHH
Confidence 355665 68899999999999999999999998887766543 467889999999987664
No 257
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=83.48 E-value=7.9 Score=37.58 Aligned_cols=97 Identities=16% Similarity=0.165 Sum_probs=63.8
Q ss_pred cccccCCCccHHHHHHHHHhC--CCCe-EEecCCchHHHhh-hhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcc
Q 001051 1011 HIILCGFGRVGQIIAQLLSER--LIPF-VALDVRSDRVAIG-RALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~--gi~V-vVID~D~e~ve~l-~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~ 1086 (1173)
++.++|.|.+|+.....+... +.++ .+.|+++++.+.. +..|.+ .+.| -.+.+.. .+.|+|++++++...
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~-~~~~--~~~ll~~---~~~D~V~I~tp~~~h 75 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIP-VYTD--LEELLAD---EDVDAVIIATPPSSH 75 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSE-EESS--HHHHHHH---TTESEEEEESSGGGH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhccc-chhH--HHHHHHh---hcCCEEEEecCCcch
Confidence 467899999999999888776 3344 4789999998876 456777 5544 2233332 278999999998753
Q ss_pred hHHHHHHHHhhCCCceEEEE---ecChhhHHHH
Q 001051 1087 NYRTVWALSKYFPNVKTFVR---AHDIDHGLNL 1116 (1173)
Q Consensus 1087 Ni~iv~~ar~l~p~~~IIar---a~d~e~~~~L 1116 (1173)
..++..+-+.+ ..+++. +.+.+..+.+
T Consensus 76 -~~~~~~~l~~g--~~v~~EKP~~~~~~~~~~l 105 (120)
T PF01408_consen 76 -AEIAKKALEAG--KHVLVEKPLALTLEEAEEL 105 (120)
T ss_dssp -HHHHHHHHHTT--SEEEEESSSSSSHHHHHHH
T ss_pred -HHHHHHHHHcC--CEEEEEcCCcCCHHHHHHH
Confidence 44444444443 356664 4455555554
No 258
>PRK09072 short chain dehydrogenase; Provisional
Probab=83.47 E-value=1.4 Score=48.78 Aligned_cols=73 Identities=15% Similarity=0.107 Sum_probs=55.5
Q ss_pred ccccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhC-----CCCEEEecCCCHHHHhhcC-----ccccCEEE
Q 001051 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL-----DLPVYFGDAGSREVLHKVG-----AERACAAA 1078 (1173)
Q Consensus 1010 ~hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~-----g~~vi~GDasd~e~Le~ag-----I~~A~~VV 1078 (1173)
+.++|.| .|.+|..+++.|.++|+.|++++++++..+.+... ...++.+|.+|++.++.+- ....|.+|
T Consensus 6 ~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id~lv 85 (263)
T PRK09072 6 KRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGINVLI 85 (263)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 3577777 58899999999999999999999998877655432 4667889999998765431 24567877
Q ss_pred EecC
Q 001051 1079 ITLD 1082 (1173)
Q Consensus 1079 i~t~ 1082 (1173)
...+
T Consensus 86 ~~ag 89 (263)
T PRK09072 86 NNAG 89 (263)
T ss_pred ECCC
Confidence 7654
No 259
>PHA02562 46 endonuclease subunit; Provisional
Probab=83.46 E-value=1.2e+02 Score=37.94 Aligned_cols=29 Identities=10% Similarity=0.142 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 001051 217 KEAVHKATMALSLAEARLQVAIESLQDVK 245 (1173)
Q Consensus 217 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 245 (1173)
.++++++......++..+..........+
T Consensus 254 ~~~L~~l~~~~~~~~~~l~~~~~~~~~~~ 282 (562)
T PHA02562 254 SAALNKLNTAAAKIKSKIEQFQKVIKMYE 282 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35567777777777777776666666554
No 260
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.46 E-value=2.9 Score=50.98 Aligned_cols=86 Identities=12% Similarity=0.037 Sum_probs=61.1
Q ss_pred ccccccCCCccHHHHHHHHHhCCCCeEEecCCch-----HHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCC
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSD-----RVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e-----~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd 1084 (1173)
+++.|+|+|..|..+++.|.+.|+.|++.|.++. ..+++++.|..+..|+.. ++.+ .++|.||.+.+-+
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~-~~~~-----~~~dlVV~Spgi~ 88 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENY-LDKL-----DGFDVIFKTPSMR 88 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCC-hHHh-----ccCCEEEECCCCC
Confidence 4689999999999999999999999999997752 234577779888887654 2222 4578887776555
Q ss_pred cchHHHHHHHHhhCCCceEE
Q 001051 1085 GANYRTVWALSKYFPNVKTF 1104 (1173)
Q Consensus 1085 ~~Ni~iv~~ar~l~p~~~II 1104 (1173)
..| -....+++.+ ++|+
T Consensus 89 ~~~-p~~~~a~~~~--i~i~ 105 (458)
T PRK01710 89 IDS-PELVKAKEEG--AYIT 105 (458)
T ss_pred CCc-hHHHHHHHcC--CcEE
Confidence 444 3445555543 3444
No 261
>PLN00016 RNA-binding protein; Provisional
Probab=83.42 E-value=2.8 Score=49.52 Aligned_cols=89 Identities=7% Similarity=-0.080 Sum_probs=60.0
Q ss_pred cccccc----C-CCccHHHHHHHHHhCCCCeEEecCCchHHH-----------hhhhCCCCEEEecCCCHHHHhhcCccc
Q 001051 1010 DHIILC----G-FGRVGQIIAQLLSERLIPFVALDVRSDRVA-----------IGRALDLPVYFGDAGSREVLHKVGAER 1073 (1173)
Q Consensus 1010 ~hvIIi----G-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve-----------~l~~~g~~vi~GDasd~e~Le~agI~~ 1073 (1173)
..++|+ | .|.+|..+++.|.+.|++|+++++++.... .+...|..++.||..+.+.+. ...+
T Consensus 53 ~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~~--~~~~ 130 (378)
T PLN00016 53 KKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVKSKV--AGAG 130 (378)
T ss_pred ceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHHhhh--ccCC
Confidence 457788 5 699999999999999999999999875432 223457899999998833222 2346
Q ss_pred cCEEEEecCCCcc-hHHHHHHHHhhCCC
Q 001051 1074 ACAAAITLDTPGA-NYRTVWALSKYFPN 1100 (1173)
Q Consensus 1074 A~~VVi~t~Dd~~-Ni~iv~~ar~l~p~ 1100 (1173)
+|.|+-..+.+.. ...+...+++.+.+
T Consensus 131 ~d~Vi~~~~~~~~~~~~ll~aa~~~gvk 158 (378)
T PLN00016 131 FDVVYDNNGKDLDEVEPVADWAKSPGLK 158 (378)
T ss_pred ccEEEeCCCCCHHHHHHHHHHHHHcCCC
Confidence 7887766544321 12344455655543
No 262
>PRK06949 short chain dehydrogenase; Provisional
Probab=83.31 E-value=1.6 Score=47.87 Aligned_cols=73 Identities=18% Similarity=0.064 Sum_probs=55.1
Q ss_pred ccccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhh------CCCCEEEecCCCHHHHhhcCc------cccCE
Q 001051 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA------LDLPVYFGDAGSREVLHKVGA------ERACA 1076 (1173)
Q Consensus 1010 ~hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~------~g~~vi~GDasd~e~Le~agI------~~A~~ 1076 (1173)
++++|.| .|.+|..+++.|.++|++|+++++++++.+.+.. ....++.+|.++++.++++-- ...|.
T Consensus 10 k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~ 89 (258)
T PRK06949 10 KVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAGTIDI 89 (258)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcCCCCE
Confidence 5667776 4889999999999999999999999887755432 245688999999987766421 24677
Q ss_pred EEEecC
Q 001051 1077 AAITLD 1082 (1173)
Q Consensus 1077 VVi~t~ 1082 (1173)
+|-...
T Consensus 90 li~~ag 95 (258)
T PRK06949 90 LVNNSG 95 (258)
T ss_pred EEECCC
Confidence 776554
No 263
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.30 E-value=5.6 Score=45.41 Aligned_cols=39 Identities=26% Similarity=0.349 Sum_probs=35.5
Q ss_pred ccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhh
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIG 1048 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l 1048 (1173)
+++.|+|.|.+|..++..|...|++|+++|.+++.++.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 43 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAG 43 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 458899999999999999999999999999999887764
No 264
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=83.26 E-value=2.7 Score=49.29 Aligned_cols=100 Identities=15% Similarity=0.158 Sum_probs=63.7
Q ss_pred ccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEE-Ee-cCC------CHHHHhhcCccccCEEEEec
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVY-FG-DAG------SREVLHKVGAERACAAAITL 1081 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi-~G-Das------d~e~Le~agI~~A~~VVi~t 1081 (1173)
-++.|+|.|.+|..++..|.+.| +++++.++++.++.+++.+.+.- .+ +.. -...+.+ .++++|.|++++
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~-a~~~aDlVilav 85 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAE-AANCADVVVMGV 85 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHH-HHhcCCEEEEEe
Confidence 45899999999999999999988 78888899999988876543211 11 110 0011222 146789999999
Q ss_pred CCCcchHHHHHHHHh-hCCCceEEEEecChhh
Q 001051 1082 DTPGANYRTVWALSK-YFPNVKTFVRAHDIDH 1112 (1173)
Q Consensus 1082 ~Dd~~Ni~iv~~ar~-l~p~~~IIara~d~e~ 1112 (1173)
+..... .++..++. +.++..++..++.-++
T Consensus 86 ps~~~~-~vl~~i~~~l~~~~~vIsl~kGi~~ 116 (341)
T PRK12439 86 PSHGFR-GVLTELAKELRPWVPVVSLVKGLEQ 116 (341)
T ss_pred CHHHHH-HHHHHHHhhcCCCCEEEEEEeCCcC
Confidence 865322 22333333 3455556666665554
No 265
>PRK06483 dihydromonapterin reductase; Provisional
Probab=83.24 E-value=1.9 Score=46.83 Aligned_cols=72 Identities=14% Similarity=0.056 Sum_probs=53.4
Q ss_pred ccccccCC-CccHHHHHHHHHhCCCCeEEecCCchH-HHhhhhCCCCEEEecCCCHHHHhhc------CccccCEEEEec
Q 001051 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDR-VAIGRALDLPVYFGDAGSREVLHKV------GAERACAAAITL 1081 (1173)
Q Consensus 1010 ~hvIIiG~-G~~G~~Ia~~L~~~gi~VvVID~D~e~-ve~l~~~g~~vi~GDasd~e~Le~a------gI~~A~~VVi~t 1081 (1173)
+.++|.|. +.+|..+++.|.++|++|++++++++. .+.++..+..++.+|.++++.++++ .....|.+|-..
T Consensus 3 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~a 82 (236)
T PRK06483 3 APILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAIDGLRQAGAQCIQADFSTNAGIMAFIDELKQHTDGLRAIIHNA 82 (236)
T ss_pred ceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHHHHHHHcCCEEEEcCCCCHHHHHHHHHHHHhhCCCccEEEECC
Confidence 45677775 679999999999999999999998754 4455556778889999998876543 112456666554
No 266
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.23 E-value=3 Score=50.60 Aligned_cols=78 Identities=17% Similarity=0.142 Sum_probs=58.3
Q ss_pred cccccCCCccHHHHHHHHHhCCCCeEEecCCch-HH----HhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCc
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSD-RV----AIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e-~v----e~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~ 1085 (1173)
++.|+|.|..|...++.|.+.|+.|++.|.++. .. +.+++.|..+..|...+.+.++. .+.+.+.||...+-+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~-~~~~~d~vv~s~gi~~ 80 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQP-WLDQPDLVVVSPGIPW 80 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhH-HhhcCCEEEECCCCCC
Confidence 478999999999999999999999999998753 22 34667798888887666543222 2456888888777766
Q ss_pred chHH
Q 001051 1086 ANYR 1089 (1173)
Q Consensus 1086 ~Ni~ 1089 (1173)
.|-.
T Consensus 81 ~~~~ 84 (459)
T PRK02705 81 DHPT 84 (459)
T ss_pred CCHH
Confidence 5543
No 267
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=83.16 E-value=4.1 Score=48.52 Aligned_cols=78 Identities=13% Similarity=0.116 Sum_probs=51.6
Q ss_pred cccccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcch
Q 001051 1009 QDHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1173)
Q Consensus 1009 k~hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~N 1087 (1173)
..++.|+| .|.+|..+++.|.+.|++|+++|+++. .+.+ + -+.++|.||.+++.+...
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-----------------~~~~---~-~~~~aDlVilavP~~~~~ 156 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-----------------DRAE---D-ILADAGMVIVSVPIHLTE 156 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-----------------hhHH---H-HHhcCCEEEEeCcHHHHH
Confidence 45788998 999999999999999999999998631 0111 1 135688888888887532
Q ss_pred HHHHHHHHhhCCCceEEEEecC
Q 001051 1088 YRTVWALSKYFPNVKTFVRAHD 1109 (1173)
Q Consensus 1088 i~iv~~ar~l~p~~~IIara~d 1109 (1173)
-.+. .+..+.|+ .+++-+.+
T Consensus 157 ~~~~-~l~~l~~~-~iv~Dv~S 176 (374)
T PRK11199 157 EVIA-RLPPLPED-CILVDLTS 176 (374)
T ss_pred HHHH-HHhCCCCC-cEEEECCC
Confidence 2222 22223344 35555444
No 268
>COG0679 Predicted permeases [General function prediction only]
Probab=83.12 E-value=88 Score=36.39 Aligned_cols=109 Identities=23% Similarity=0.292 Sum_probs=66.1
Q ss_pred CCchHHHHHHHHHhhcccccccccC-chhHHHHHHHHHHHHHHHHhhcCChhHHHhchhhHHHHHHH-HHHHHHHHHHHH
Q 001051 625 GGSPVLGYLAAGILIGPYGLSIIRH-VHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSA-QVLVTAVVVGLV 702 (1173)
Q Consensus 625 ~lP~IvG~LLaGILLGP~gLgli~~-~~~~~~LaeLGL~~LLF~aGLEldl~~Lrr~~k~il~La~~-~vllt~~~vgll 702 (1173)
+-|++++ .+.|+++...++.+-+. ....+.+++...+..|+..|..++....++...+....+.. -.++..+ +.+.
T Consensus 167 ~nP~i~a-~i~g~~~~~~~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~~~~kll~~Pl-~~~~ 244 (311)
T COG0679 167 TNPLIIA-LILGLLLNLLGISLPAPLDTAVDLLASAASPLALIALGLSLAFLKLKGSKPPIILIALSLKLLLAPL-VALL 244 (311)
T ss_pred hCcHHHH-HHHHHHHHHcCCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhccccchhHHHHHHHHHHHHHH-HHHH
Confidence 5566666 56677777544443221 24568899999999999999999997777776666655555 3333222 3444
Q ss_pred HHHHhCCChHHHHHHhhccccCcHHHHHHHHHhc
Q 001051 703 AHFVSGLPGPASIVIGNGLALSSTAVVLQVLQER 736 (1173)
Q Consensus 703 ~~~llGls~~~ALlLGaiLS~TSpaVVv~vL~el 736 (1173)
..+++|++.... ....+.+...+++..-++.++
T Consensus 245 ~~~~~~l~~~~~-~v~vl~~a~P~A~~~~v~a~~ 277 (311)
T COG0679 245 VAKLLGLSGLAL-QVLVLLSAMPTAVNAYVLARQ 277 (311)
T ss_pred HHHHcCCChHHH-HHHHHHhhCcHHhHHHHHHHH
Confidence 556678776544 333333445555555555433
No 269
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=83.01 E-value=16 Score=44.44 Aligned_cols=91 Identities=21% Similarity=0.247 Sum_probs=54.4
Q ss_pred cccccccCCCccHHHHHHHHHhC---CCCeE-EecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCC
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSER---LIPFV-ALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~---gi~Vv-VID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd 1084 (1173)
.+.++|+|.|+.+..+++.|.+. |+.++ ++|.|++.. ..-.|.+++ |+..+ ..+-+.-.+.+.|+++.++.
T Consensus 125 ~~rvLIvGag~~a~~l~~~L~~~~~~g~~vvG~idd~~~~~--~~i~g~pVl-g~~~~--l~~~i~~~~id~ViIa~p~~ 199 (445)
T TIGR03025 125 LRRVLIVGTGEAARELAAALSRNPDLGYRVVGFVDDRPSDR--VEVAGLPVL-GKLDD--LVELVRAHRVDEVIIALPLS 199 (445)
T ss_pred CCcEEEEECCHHHHHHHHHHhhCccCCeEEEEEEeCCcccc--cccCCCccc-CCHHH--HHHHHHhCCCCEEEEecCcc
Confidence 35699999999999999999753 45444 467665442 223455554 44332 22222334678888888765
Q ss_pred cch--HHHHHHHHhhCCCceEE
Q 001051 1085 GAN--YRTVWALSKYFPNVKTF 1104 (1173)
Q Consensus 1085 ~~N--i~iv~~ar~l~p~~~II 1104 (1173)
... ..+...+++.+.+++++
T Consensus 200 ~~~~~~~ll~~~~~~gv~V~~v 221 (445)
T TIGR03025 200 EEARILELLLQLRDLGVDVRLV 221 (445)
T ss_pred cHHHHHHHHHHHHhcCCEEEEe
Confidence 433 24555666665444443
No 270
>PTZ00325 malate dehydrogenase; Provisional
Probab=82.98 E-value=9.1 Score=44.79 Aligned_cols=136 Identities=14% Similarity=0.076 Sum_probs=77.4
Q ss_pred cccccccCC-CccHHHHHHHHHhCC--CCeEEecCCchHHH--hhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCC
Q 001051 1009 QDHIILCGF-GRVGQIIAQLLSERL--IPFVALDVRSDRVA--IGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDT 1083 (1173)
Q Consensus 1009 k~hvIIiG~-G~~G~~Ia~~L~~~g--i~VvVID~D~e~ve--~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~D 1083 (1173)
..++.|+|. |.+|..++..|...+ .+++++|.+....+ .+.+....+...+.+++..+. ..+.++|.||++.+.
T Consensus 8 ~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~-~~l~gaDvVVitaG~ 86 (321)
T PTZ00325 8 MFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWE-KALRGADLVLICAGV 86 (321)
T ss_pred CCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchH-HHhCCCCEEEECCCC
Confidence 347899998 999999999998555 57999998532221 222222234445555543322 246689999999877
Q ss_pred Cc-----------chHH----HHHHHHhhCCCceEEEEecChhhH-H-HH-----HHC--CCCeeecCCcHHHHHHHHHH
Q 001051 1084 PG-----------ANYR----TVWALSKYFPNVKTFVRAHDIDHG-L-NL-----EKA--GATAVVPETLEPSLQLAAAV 1139 (1173)
Q Consensus 1084 d~-----------~Ni~----iv~~ar~l~p~~~IIara~d~e~~-~-~L-----~~a--GAd~VI~p~~~aa~~LA~~v 1139 (1173)
+. .|+. ++..+++.+|+. ++..+.++-.. - .. +.. -.++||-...+=+.++-+.+
T Consensus 87 ~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~-iviv~SNPvdv~~~~~~~~~~~~sg~p~~~viG~g~LDs~R~r~~l 165 (321)
T PTZ00325 87 PRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKA-IVGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKFV 165 (321)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCe-EEEEecCcHHHHHHHHHhhhhhccCCChhheeechhHHHHHHHHHH
Confidence 52 3332 344778888884 55445444322 2 22 112 24555544334444444444
Q ss_pred HHhcCCC
Q 001051 1140 LAQAKLP 1146 (1173)
Q Consensus 1140 l~~l~~~ 1146 (1173)
-..++++
T Consensus 166 a~~l~v~ 172 (321)
T PTZ00325 166 AEALGMN 172 (321)
T ss_pred HHHhCcC
Confidence 4444333
No 271
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=82.97 E-value=1.7 Score=53.17 Aligned_cols=77 Identities=19% Similarity=0.225 Sum_probs=56.1
Q ss_pred ccccccccCCCccHHHHHHHHHhCCCCeEEecCCch---------------------HHHhhhhCCCCEEEecCCCHH-H
Q 001051 1008 LQDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSD---------------------RVAIGRALDLPVYFGDAGSRE-V 1065 (1173)
Q Consensus 1008 lk~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e---------------------~ve~l~~~g~~vi~GDasd~e-~ 1065 (1173)
..++++|+|.|..|...+..|..+|++|+++|.++. ..+.+++.|..+..+-....+ .
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~ 219 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDIS 219 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCccC
Confidence 356799999999999999999999999999998752 345667788877655322211 2
Q ss_pred HhhcCccccCEEEEecCCCc
Q 001051 1066 LHKVGAERACAAAITLDTPG 1085 (1173)
Q Consensus 1066 Le~agI~~A~~VVi~t~Dd~ 1085 (1173)
++.. ..++|.|+++++...
T Consensus 220 ~~~~-~~~~D~vilAtGa~~ 238 (467)
T TIGR01318 220 LDDL-LEDYDAVFLGVGTYR 238 (467)
T ss_pred HHHH-HhcCCEEEEEeCCCC
Confidence 2221 136899999997753
No 272
>PRK06940 short chain dehydrogenase; Provisional
Probab=82.92 E-value=1.4 Score=49.61 Aligned_cols=73 Identities=18% Similarity=0.231 Sum_probs=53.9
Q ss_pred cccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhh----hhCC--CCEEEecCCCHHHHhhcC-----ccccCEE
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIG----RALD--LPVYFGDAGSREVLHKVG-----AERACAA 1077 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l----~~~g--~~vi~GDasd~e~Le~ag-----I~~A~~V 1077 (1173)
++.++|.|.+.+|..+++.|. .|.+|++++++++..+.. +..+ ..++.+|.++++.++++- ....|.+
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~l 80 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVTGL 80 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCCEE
Confidence 467889999999999999996 799999999997765433 3333 456789999998776541 1346777
Q ss_pred EEecC
Q 001051 1078 AITLD 1082 (1173)
Q Consensus 1078 Vi~t~ 1082 (1173)
|-..+
T Consensus 81 i~nAG 85 (275)
T PRK06940 81 VHTAG 85 (275)
T ss_pred EECCC
Confidence 76543
No 273
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=82.85 E-value=1.9 Score=50.04 Aligned_cols=67 Identities=15% Similarity=0.276 Sum_probs=51.6
Q ss_pred cccccCC-CccHHHHHHHHHhC-CCCeEEecCCchHHHhh-hhCCCCEEEecCC-CHHHHhhcCccccCEEE
Q 001051 1011 HIILCGF-GRVGQIIAQLLSER-LIPFVALDVRSDRVAIG-RALDLPVYFGDAG-SREVLHKVGAERACAAA 1078 (1173)
Q Consensus 1011 hvIIiG~-G~~G~~Ia~~L~~~-gi~VvVID~D~e~ve~l-~~~g~~vi~GDas-d~e~Le~agI~~A~~VV 1078 (1173)
+++|.|. |-+|..+++.|.+. |++|+.+|++.+....+ ...+++++.||.. +.+.+.++ ++++|.||
T Consensus 3 ~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-~~~~d~Vi 73 (347)
T PRK11908 3 KVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYH-VKKCDVIL 73 (347)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHH-HcCCCEEE
Confidence 4788886 99999999999875 69999999877655444 3346889999998 66666554 34688877
No 274
>PRK07680 late competence protein ComER; Validated
Probab=82.84 E-value=5 Score=45.36 Aligned_cols=97 Identities=15% Similarity=0.092 Sum_probs=62.0
Q ss_pred ccccCCCccHHHHHHHHHhCCC----CeEEecCCchHHHhhhhC--CCCEEEecCCCHHHHhhcCccccCEEEEecCCCc
Q 001051 1012 IILCGFGRVGQIIAQLLSERLI----PFVALDVRSDRVAIGRAL--DLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1173)
Q Consensus 1012 vIIiG~G~~G~~Ia~~L~~~gi----~VvVID~D~e~ve~l~~~--g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~ 1085 (1173)
+.|+|.|.+|..+++.|.+.|. ++.+.++++++.+.+.+. |..+. ....+. +.++|.|++++.+..
T Consensus 3 I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~---~~~~~~-----~~~aDiVilav~p~~ 74 (273)
T PRK07680 3 IGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVA---KTIEEV-----ISQSDLIFICVKPLD 74 (273)
T ss_pred EEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEE---CCHHHH-----HHhCCEEEEecCHHH
Confidence 6789999999999999998883 789999999888777553 33221 122222 246899999996543
Q ss_pred chHHHHHHHHhh-CCCceEEEEecChhhHHHHHH
Q 001051 1086 ANYRTVWALSKY-FPNVKTFVRAHDIDHGLNLEK 1118 (1173)
Q Consensus 1086 ~Ni~iv~~ar~l-~p~~~IIara~d~e~~~~L~~ 1118 (1173)
...+...++.. .++ .+|+........+.|+.
T Consensus 75 -~~~vl~~l~~~l~~~-~~iis~~ag~~~~~L~~ 106 (273)
T PRK07680 75 -IYPLLQKLAPHLTDE-HCLVSITSPISVEQLET 106 (273)
T ss_pred -HHHHHHHHHhhcCCC-CEEEEECCCCCHHHHHH
Confidence 22333334333 234 45555555445555554
No 275
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=82.81 E-value=87 Score=35.07 Aligned_cols=99 Identities=11% Similarity=0.059 Sum_probs=57.9
Q ss_pred HHHHHHHHHhhcCChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHHHHHHHHHhcCCC
Q 001051 660 GVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTAVVLQVLQERGES 739 (1173)
Q Consensus 660 GL~~LLF~aGLEldl~~Lrr~~k~il~La~~~vllt~~~vgll~~~llGls~~~ALlLGaiLS~TSpaVVv~vL~elg~l 739 (1173)
|-+...|-.-+--+++.+|++|++++....++.++..+ .++.+..++|++... ....+=-...+++.+.+=++.|-.
T Consensus 69 gPAtVAlAvPLYkq~~~ik~~w~~I~~g~~vGs~~ai~-s~~llak~~g~~~~~--~~Sl~PkSvTTpiAm~vs~~iGGi 145 (230)
T COG1346 69 GPATVALAVPLYKQRHLIKRHWKPILAGVLVGSVVAII-SGVLLAKLFGLSPEL--ILSLLPKSVTTPIAMEVSESIGGI 145 (230)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCCHHH--HHHhcccccccHHHHHHHHhcCCc
Confidence 34556666777778999999999988777777666544 444444566776542 222233334556777777777765
Q ss_pred CCchhHHHHHHHhhhhHHHHHH
Q 001051 740 TSRHGRATFSVLLFQDLAVVVL 761 (1173)
Q Consensus 740 ~s~~grl~Ls~sllnDi~aIvl 761 (1173)
+.-..-.++-.+++.-+.+-.+
T Consensus 146 p~ltav~Vi~tGi~Gavlg~~l 167 (230)
T COG1346 146 PALTAVFVILTGILGAVLGPLL 167 (230)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 5433333333333333333333
No 276
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=82.69 E-value=7.3 Score=44.24 Aligned_cols=67 Identities=12% Similarity=0.083 Sum_probs=48.1
Q ss_pred cccccCCCccHHHHHHHHHhCC----CCeEEecCCc-hHHHhhhhC-CCCEEEecCCCHHHHhhcCccccCEEEEecCCC
Q 001051 1011 HIILCGFGRVGQIIAQLLSERL----IPFVALDVRS-DRVAIGRAL-DLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~g----i~VvVID~D~-e~ve~l~~~-g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd 1084 (1173)
++.++|.|.+|..+++.|.+.| .++++.++++ ++.+.+... |..+. .| ..+. ++++|.||+++.++
T Consensus 5 kI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~-~~--~~e~-----~~~aDvVilav~p~ 76 (279)
T PRK07679 5 NISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGT-HN--KKEL-----LTDANILFLAMKPK 76 (279)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEe-CC--HHHH-----HhcCCEEEEEeCHH
Confidence 4788999999999999999887 7889999876 466666443 54322 11 1122 35789999999876
Q ss_pred c
Q 001051 1085 G 1085 (1173)
Q Consensus 1085 ~ 1085 (1173)
.
T Consensus 77 ~ 77 (279)
T PRK07679 77 D 77 (279)
T ss_pred H
Confidence 4
No 277
>PRK06924 short chain dehydrogenase; Provisional
Probab=82.63 E-value=1.9 Score=47.21 Aligned_cols=59 Identities=17% Similarity=0.140 Sum_probs=46.0
Q ss_pred cccccC-CCccHHHHHHHHHhCCCCeEEecCCc-hHHHhhhh---CCCCEEEecCCCHHHHhhc
Q 001051 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRS-DRVAIGRA---LDLPVYFGDAGSREVLHKV 1069 (1173)
Q Consensus 1011 hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~-e~ve~l~~---~g~~vi~GDasd~e~Le~a 1069 (1173)
+++|.| .|.+|+.+++.|.++|++|+++++++ +..+.+.+ .+..++.+|.++++.++++
T Consensus 3 ~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 66 (251)
T PRK06924 3 YVIITGTSQGLGEAIANQLLEKGTHVISISRTENKELTKLAEQYNSNLTFHSLDLQDVHELETN 66 (251)
T ss_pred EEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchHHHHHHHhccCCceEEEEecCCCHHHHHHH
Confidence 566776 58899999999999999999999887 44444432 2456789999999887653
No 278
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=82.45 E-value=78 Score=43.68 Aligned_cols=27 Identities=19% Similarity=0.190 Sum_probs=16.7
Q ss_pred CcHHHHHHHHHHHHHHHHHhhhhhHHH
Q 001051 149 TTDELRELLMNAMKELEVAQLNSTMFE 175 (1173)
Q Consensus 149 ~~~~~~~~l~~~~~~~e~a~~~~~~~e 175 (1173)
..+.++.-|.....+|+.+.-=..-||
T Consensus 314 ~~~~~~~~l~~~~~~L~~i~~~~~~ye 340 (1201)
T PF12128_consen 314 ELSALNADLARIKSELDEIEQQKKDYE 340 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666666555554
No 279
>PF13514 AAA_27: AAA domain
Probab=82.38 E-value=92 Score=42.62 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 001051 158 MNAMKELEVAQLNSTMFEEKAQRISEA 184 (1173)
Q Consensus 158 ~~~~~~~e~a~~~~~~~e~~~~~~~~~ 184 (1173)
++..++++..+-.-..|+++++.+.+.
T Consensus 746 ~~~~~ri~~~~~~~~~f~~~~~~L~~~ 772 (1111)
T PF13514_consen 746 RELRRRIEQMEADLAAFEEQVAALAER 772 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466777777888899998888764
No 280
>PRK06180 short chain dehydrogenase; Provisional
Probab=82.37 E-value=1.8 Score=48.52 Aligned_cols=73 Identities=14% Similarity=-0.039 Sum_probs=54.7
Q ss_pred ccccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhC---CCCEEEecCCCHHHHhhcC------ccccCEEEE
Q 001051 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL---DLPVYFGDAGSREVLHKVG------AERACAAAI 1079 (1173)
Q Consensus 1010 ~hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~---g~~vi~GDasd~e~Le~ag------I~~A~~VVi 1079 (1173)
+.++|.| .|.+|..+++.|.++|++|++++++++..+.+.+. ....+.+|.++++.+.++- ....+.+|-
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~d~vv~ 84 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAEATFGPIDVLVN 84 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 3466776 57899999999999999999999999887766543 3567789999998876531 124566665
Q ss_pred ecC
Q 001051 1080 TLD 1082 (1173)
Q Consensus 1080 ~t~ 1082 (1173)
..+
T Consensus 85 ~ag 87 (277)
T PRK06180 85 NAG 87 (277)
T ss_pred CCC
Confidence 543
No 281
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=82.28 E-value=80 Score=39.57 Aligned_cols=52 Identities=23% Similarity=0.385 Sum_probs=42.0
Q ss_pred chhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 001051 265 EEDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQ 316 (1173)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~~~~~ 316 (1173)
.-...+.++..|..+.+.+|.+..+|+..++...+.|+.|+.+...--.+.+
T Consensus 278 ~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lk 329 (522)
T PF05701_consen 278 ELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLK 329 (522)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445689999999999999999999999999999999988877655444433
No 282
>PLN02583 cinnamoyl-CoA reductase
Probab=82.20 E-value=2.8 Score=47.73 Aligned_cols=70 Identities=13% Similarity=0.022 Sum_probs=50.8
Q ss_pred cccccccC-CCccHHHHHHHHHhCCCCeEEecCCchH--H----Hhhh--hCCCCEEEecCCCHHHHhhcCccccCEEEE
Q 001051 1009 QDHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDR--V----AIGR--ALDLPVYFGDAGSREVLHKVGAERACAAAI 1079 (1173)
Q Consensus 1009 k~hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~--v----e~l~--~~g~~vi~GDasd~e~Le~agI~~A~~VVi 1079 (1173)
.+.++|.| .|.+|..+++.|.++|++|+++.+++.. . ..+. ..+..++.+|.+|++.+.++ +.+++.|+-
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~-l~~~d~v~~ 84 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDA-LKGCSGLFC 84 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHH-HcCCCEEEE
Confidence 45678887 5889999999999999999998875322 1 2221 12467889999999988765 345777664
No 283
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=82.12 E-value=2 Score=49.27 Aligned_cols=72 Identities=15% Similarity=0.044 Sum_probs=52.6
Q ss_pred ccccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhh---hh-----CCCCEEEecCCCHHHHhhcCccccCEEEEe
Q 001051 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIG---RA-----LDLPVYFGDAGSREVLHKVGAERACAAAIT 1080 (1173)
Q Consensus 1010 ~hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l---~~-----~g~~vi~GDasd~e~Le~agI~~A~~VVi~ 1080 (1173)
+.++|.| .|-+|..+++.|.++|++|+++.+|++..+.. .. ....++.||.++++.++++ +++.|.||-+
T Consensus 6 k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~-~~~~d~vih~ 84 (325)
T PLN02989 6 KVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELA-IDGCETVFHT 84 (325)
T ss_pred CEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHH-HcCCCEEEEe
Confidence 4677777 58899999999999999998887776543221 11 2356788999999988765 3457777665
Q ss_pred cC
Q 001051 1081 LD 1082 (1173)
Q Consensus 1081 t~ 1082 (1173)
..
T Consensus 85 A~ 86 (325)
T PLN02989 85 AS 86 (325)
T ss_pred CC
Confidence 53
No 284
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=82.00 E-value=6.1 Score=43.42 Aligned_cols=87 Identities=11% Similarity=0.082 Sum_probs=57.3
Q ss_pred cccccccCCCccHHHHHHHHHhCCCC-eEEecCCc---h---------------HHH----hhhhC----CCCEEEecCC
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLIP-FVALDVRS---D---------------RVA----IGRAL----DLPVYFGDAG 1061 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi~-VvVID~D~---e---------------~ve----~l~~~----g~~vi~GDas 1061 (1173)
..+++|+|.|-+|..+++.|...|+. ++++|.|. . +++ ++++. .+..+....+
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~i~ 107 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEKID 107 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeeecC
Confidence 45799999999999999999999986 99999992 1 111 22221 2223334444
Q ss_pred CHHHHhhcCccccCEEEEecCCCcchHHHHHHHHhh
Q 001051 1062 SREVLHKVGAERACAAAITLDTPGANYRTVWALSKY 1097 (1173)
Q Consensus 1062 d~e~Le~agI~~A~~VVi~t~Dd~~Ni~iv~~ar~l 1097 (1173)
+. .+.+ .++++|.||.++++.+.-..+...+++.
T Consensus 108 ~~-~~~~-~~~~~DvVI~a~D~~~~r~~l~~~~~~~ 141 (212)
T PRK08644 108 ED-NIEE-LFKDCDIVVEAFDNAETKAMLVETVLEH 141 (212)
T ss_pred HH-HHHH-HHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 32 2222 2467899998887776555555666666
No 285
>PLN02256 arogenate dehydrogenase
Probab=81.90 E-value=3.6 Score=47.72 Aligned_cols=67 Identities=16% Similarity=0.185 Sum_probs=48.9
Q ss_pred ccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCC
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd 1084 (1173)
..+.|+|+|.+|..++..|.+.|++++++|+++.. +...+.|... ..+.+.+. ..++|.|+++++.+
T Consensus 37 ~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~gv~~----~~~~~e~~---~~~aDvVilavp~~ 103 (304)
T PLN02256 37 LKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAAELGVSF----FRDPDDFC---EEHPDVVLLCTSIL 103 (304)
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHHHcCCee----eCCHHHHh---hCCCCEEEEecCHH
Confidence 36889999999999999999999999999998743 4445556532 22322221 13589999999875
No 286
>PRK07774 short chain dehydrogenase; Provisional
Probab=81.85 E-value=1.7 Score=47.44 Aligned_cols=73 Identities=15% Similarity=0.071 Sum_probs=53.8
Q ss_pred ccccccCC-CccHHHHHHHHHhCCCCeEEecCCchHHHhhh----hC--CCCEEEecCCCHHHHhhcC------ccccCE
Q 001051 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGR----AL--DLPVYFGDAGSREVLHKVG------AERACA 1076 (1173)
Q Consensus 1010 ~hvIIiG~-G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~----~~--g~~vi~GDasd~e~Le~ag------I~~A~~ 1076 (1173)
+.++|.|. |.+|..+++.|.++|++|++++++++..+... +. ....+..|.++++.++++- ....|.
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ 86 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFGGIDY 86 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCCCE
Confidence 45788876 89999999999999999999999976554332 22 3456789999998765421 125788
Q ss_pred EEEecC
Q 001051 1077 AAITLD 1082 (1173)
Q Consensus 1077 VVi~t~ 1082 (1173)
||-..+
T Consensus 87 vi~~ag 92 (250)
T PRK07774 87 LVNNAA 92 (250)
T ss_pred EEECCC
Confidence 886554
No 287
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=81.83 E-value=1.9 Score=47.40 Aligned_cols=70 Identities=13% Similarity=0.128 Sum_probs=53.4
Q ss_pred ccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhh---CCCCEEEecCCCHHHHhhc------CccccCEEEEec
Q 001051 1012 IILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA---LDLPVYFGDAGSREVLHKV------GAERACAAAITL 1081 (1173)
Q Consensus 1012 vIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~---~g~~vi~GDasd~e~Le~a------gI~~A~~VVi~t 1081 (1173)
++|.| .|.+|..+++.|.++|++|++++++++..+.+.+ .+...+.+|.++++.++++ .....+.+|...
T Consensus 3 vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~a 82 (248)
T PRK10538 3 VLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLVNNA 82 (248)
T ss_pred EEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 45666 5889999999999999999999999887765533 2456788999999887653 113578877554
No 288
>PLN02735 carbamoyl-phosphate synthase
Probab=81.79 E-value=5.6 Score=53.81 Aligned_cols=113 Identities=20% Similarity=0.260 Sum_probs=71.0
Q ss_pred cccccccCCCcc-----------HHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhh-cCccccCE
Q 001051 1009 QDHIILCGFGRV-----------GQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHK-VGAERACA 1076 (1173)
Q Consensus 1009 k~hvIIiG~G~~-----------G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~-agI~~A~~ 1076 (1173)
-+.++|+|.|.. |..+++.|++.|++|+++|.+++.+-...+..-.++ -++.+++.+.+ +.-++.|+
T Consensus 23 ~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~Vi~vd~np~t~~~~~~~aD~~y-i~p~~~e~v~~ii~~e~~D~ 101 (1102)
T PLN02735 23 LKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLINSNPATIMTDPETADRTY-IAPMTPELVEQVIAKERPDA 101 (1102)
T ss_pred CCEEEEECCCccccccceeecchHHHHHHHHHHcCCEEEEEeCCcccccCChhhCcEEE-eCCCCHHHHHHHHHHhCCCE
Confidence 457899999985 778999999999999999999865422212222233 46677777766 45568899
Q ss_pred EEEecCCC-cchHHHHHH----HHhhC-----CCceEEEEecChh-hHHHHHHCCCC
Q 001051 1077 AAITLDTP-GANYRTVWA----LSKYF-----PNVKTFVRAHDID-HGLNLEKAGAT 1122 (1173)
Q Consensus 1077 VVi~t~Dd-~~Ni~iv~~----ar~l~-----p~~~IIara~d~e-~~~~L~~aGAd 1122 (1173)
|+.+++.+ ..|....+. +.+++ ++...+..+.|.. ..+.+++.|+.
T Consensus 102 Iip~~gg~~gl~la~~l~~~g~Le~~GI~~~G~~~~ai~~~~DK~~~k~~l~~~GIp 158 (1102)
T PLN02735 102 LLPTMGGQTALNLAVALAESGILEKYGVELIGAKLDAIKKAEDRELFKQAMEKIGLK 158 (1102)
T ss_pred EEECCCchhhHHHHHHHhhhCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHCCCC
Confidence 88887544 344433222 22222 2333344455554 34456778876
No 289
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=81.79 E-value=5.1 Score=44.02 Aligned_cols=116 Identities=18% Similarity=0.113 Sum_probs=73.0
Q ss_pred cccccCCCccHHHHHHHHHhCCCCeEEecCCch-HHHhhh-hCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchH
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSD-RVAIGR-ALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e-~ve~l~-~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni 1088 (1173)
.+.|+|.|++|..+++.|.+.|++|++--++.+ ..+.+. ..+..+.-+.. ... .+.+|.|+.+++-+ ...
T Consensus 3 ~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~-----~dA--~~~aDVVvLAVP~~-a~~ 74 (211)
T COG2085 3 IIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSN-----EDA--AALADVVVLAVPFE-AIP 74 (211)
T ss_pred EEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCCh-----HHH--HhcCCEEEEeccHH-HHH
Confidence 467899999999999999999999999966644 444332 23333222211 111 34689999999886 455
Q ss_pred HHHHHHHhhCCCceEEEEecChhhHHHHHHCCCCeeecCCcHHHHHHHH
Q 001051 1089 RTVWALSKYFPNVKTFVRAHDIDHGLNLEKAGATAVVPETLEPSLQLAA 1137 (1173)
Q Consensus 1089 ~iv~~ar~l~p~~~IIara~d~e~~~~L~~aGAd~VI~p~~~aa~~LA~ 1137 (1173)
-+...++....+ +|++-+.++... ...-+-.++++.+.-++..++.
T Consensus 75 ~v~~~l~~~~~~-KIvID~tnp~~~--~~~~~~~~~~~~~~saae~va~ 120 (211)
T COG2085 75 DVLAELRDALGG-KIVIDATNPIEV--NGEPGDLYLVPSEGSAAEIVAK 120 (211)
T ss_pred hHHHHHHHHhCC-eEEEecCCCccc--cCCccccccCCCCCcHHHHHHH
Confidence 566666766655 788888887432 1122233334455555555544
No 290
>PRK12939 short chain dehydrogenase; Provisional
Probab=81.77 E-value=1.7 Score=47.27 Aligned_cols=73 Identities=11% Similarity=-0.011 Sum_probs=54.6
Q ss_pred ccccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhh----hhC--CCCEEEecCCCHHHHhhcC------ccccCE
Q 001051 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIG----RAL--DLPVYFGDAGSREVLHKVG------AERACA 1076 (1173)
Q Consensus 1010 ~hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l----~~~--g~~vi~GDasd~e~Le~ag------I~~A~~ 1076 (1173)
++++|.| .|.+|..+++.|.++|+++++++++++..+.. +.. ...++.+|.++++.++++- ....|.
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ 87 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGGLDG 87 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 4567776 58999999999999999999999988765433 222 3567889999998876542 136788
Q ss_pred EEEecC
Q 001051 1077 AAITLD 1082 (1173)
Q Consensus 1077 VVi~t~ 1082 (1173)
+|-..+
T Consensus 88 vi~~ag 93 (250)
T PRK12939 88 LVNNAG 93 (250)
T ss_pred EEECCC
Confidence 776654
No 291
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=81.72 E-value=4.6 Score=50.00 Aligned_cols=100 Identities=15% Similarity=0.068 Sum_probs=71.8
Q ss_pred cccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCH-------------HHHh---h---c
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSR-------------EVLH---K---V 1069 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~-------------e~Le---~---a 1069 (1173)
..+++|+|.|.+|...+..+...|..|+++|.++++.+.+++.|...+.-|..+. +..+ + -
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~ 244 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAE 244 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHh
Confidence 5689999999999999999999999999999999999999999988554333221 1111 1 1
Q ss_pred CccccCEEEEecCCCc---chHHHHHHHHhhCCCceEEEEec
Q 001051 1070 GAERACAAAITLDTPG---ANYRTVWALSKYFPNVKTFVRAH 1108 (1173)
Q Consensus 1070 gI~~A~~VVi~t~Dd~---~Ni~iv~~ar~l~p~~~IIara~ 1108 (1173)
.+.++|.+|-+...+. .-+.+-.+++...|.-.|+-...
T Consensus 245 ~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 245 QAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred ccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 2357999999998754 22223556666667655555444
No 292
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=81.65 E-value=54 Score=36.81 Aligned_cols=89 Identities=15% Similarity=0.057 Sum_probs=61.8
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhhcccCCcchhhHHHHHHHhhccchhhhHHHHHHHHH
Q 001051 891 PKLLLSNFPVITGALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVG 970 (1173)
Q Consensus 891 l~~L~~~~~lilllvvllvv~K~l~v~l~~~l~g~~~real~lGl~LaprGevalvla~lAl~~giis~el~silvlvVv 970 (1173)
...+..+|..++..+++..+.-++..+..++++|.+. .+...+.||+...-+.+.++-+.|.+..-...+++++-+
T Consensus 86 ~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~----~~~~Sl~pKSVTtPIAm~is~~iGG~psLtA~~ViitGi 161 (232)
T PRK04288 86 RDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDN----AVMASMLPQAATTAIALPVSAGIGGIKEITSFAVIFNAV 161 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH----HHHHHHhhHhhhHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 4445556655555555555666677788888888875 233457899998888888888888766555555666667
Q ss_pred HHHHHHHHHHhhh
Q 001051 971 ISMALTPWLAAGG 983 (1173)
Q Consensus 971 lS~iItPiL~~~~ 983 (1173)
+..+++|.+.++.
T Consensus 162 ~Gai~g~~llk~~ 174 (232)
T PRK04288 162 IIYALGAKFLKLF 174 (232)
T ss_pred HHHHHHHHHHHHc
Confidence 7788888887764
No 293
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=81.64 E-value=5 Score=47.86 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=38.9
Q ss_pred cccccCCCccHH-HHHHHHHhCCCCeEEecCCchHHHhhhhCCCC
Q 001051 1011 HIILCGFGRVGQ-IIAQLLSERLIPFVALDVRSDRVAIGRALDLP 1054 (1173)
Q Consensus 1011 hvIIiG~G~~G~-~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~ 1054 (1173)
.++++|.|.+|+ .+...|.+.|+.|++||.+++.++.+++.|..
T Consensus 2 ki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qglY 46 (381)
T PRK02318 2 KAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRKSY 46 (381)
T ss_pred ceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCCCe
Confidence 378899999998 66888999999999999999999999888764
No 294
>PRK08177 short chain dehydrogenase; Provisional
Probab=81.61 E-value=2.1 Score=46.30 Aligned_cols=71 Identities=14% Similarity=0.021 Sum_probs=53.5
Q ss_pred cccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhh-CCCCEEEecCCCHHHHhhcC----ccccCEEEEec
Q 001051 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-LDLPVYFGDAGSREVLHKVG----AERACAAAITL 1081 (1173)
Q Consensus 1011 hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~-~g~~vi~GDasd~e~Le~ag----I~~A~~VVi~t 1081 (1173)
.++|.| .|.+|..+++.|.+.|+.|++++++++..+.+.+ .+..++.+|.+|++.++++- -.+.+.++...
T Consensus 3 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~~a 79 (225)
T PRK08177 3 TALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQALPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLFVNA 79 (225)
T ss_pred EEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHhccccceEEcCCCCHHHHHHHHHHhhcCCCCEEEEcC
Confidence 456666 7889999999999999999999999877655533 35677889999987665431 13577777654
No 295
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=81.61 E-value=2 Score=46.79 Aligned_cols=72 Identities=13% Similarity=-0.005 Sum_probs=54.9
Q ss_pred cccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhh-----CCCCEEEecCCCHHHHhhcC------ccccCEEE
Q 001051 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-----LDLPVYFGDAGSREVLHKVG------AERACAAA 1078 (1173)
Q Consensus 1011 hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~-----~g~~vi~GDasd~e~Le~ag------I~~A~~VV 1078 (1173)
.++|.| .|.+|..+++.|.++|++|++++++++..+.+.+ ....++.+|.++++.+.++- ....|.||
T Consensus 7 ~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi 86 (251)
T PRK07231 7 VAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGSVDILV 86 (251)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCCEEE
Confidence 566776 5789999999999999999999999877654422 23568899999999887541 13567777
Q ss_pred EecC
Q 001051 1079 ITLD 1082 (1173)
Q Consensus 1079 i~t~ 1082 (1173)
-...
T Consensus 87 ~~ag 90 (251)
T PRK07231 87 NNAG 90 (251)
T ss_pred ECCC
Confidence 7664
No 296
>PRK08655 prephenate dehydrogenase; Provisional
Probab=81.55 E-value=3.4 Score=50.23 Aligned_cols=99 Identities=13% Similarity=0.114 Sum_probs=61.0
Q ss_pred cccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHh-hhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchH
Q 001051 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAI-GRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1173)
Q Consensus 1011 hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~-l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni 1088 (1173)
.+.|+| .|.+|..+++.|.+.|++|+++|++++.... ..+.|.. +. .+.. + .+.++|.|+++++.+...-
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~-~~---~~~~---e-~~~~aDvVIlavp~~~~~~ 73 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVE-YA---NDNI---D-AAKDADIVIISVPINVTED 73 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCe-ec---cCHH---H-HhccCCEEEEecCHHHHHH
Confidence 367887 7999999999999999999999999887643 3444542 11 1211 1 1457899999998864432
Q ss_pred HHHHHHHhhCCCceEEEEecC--hhhHHHHHH
Q 001051 1089 RTVWALSKYFPNVKTFVRAHD--IDHGLNLEK 1118 (1173)
Q Consensus 1089 ~iv~~ar~l~p~~~IIara~d--~e~~~~L~~ 1118 (1173)
.+...+....++. +++-+.+ ....+.+++
T Consensus 74 vl~~l~~~l~~~~-iViDvsSvK~~~~~~l~~ 104 (437)
T PRK08655 74 VIKEVAPHVKEGS-LLMDVTSVKERPVEAMEE 104 (437)
T ss_pred HHHHHHhhCCCCC-EEEEcccccHHHHHHHHH
Confidence 2222233334443 4444433 334344433
No 297
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=81.53 E-value=3.7 Score=47.52 Aligned_cols=132 Identities=17% Similarity=0.148 Sum_probs=78.6
Q ss_pred cccccCCCccHHHHHHHHHhCC--CCeEEecCCchHHHh----hhhCC----CCEEEecCCCHHHHhhcCccccCEEEEe
Q 001051 1011 HIILCGFGRVGQIIAQLLSERL--IPFVALDVRSDRVAI----GRALD----LPVYFGDAGSREVLHKVGAERACAAAIT 1080 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~g--i~VvVID~D~e~ve~----l~~~g----~~vi~GDasd~e~Le~agI~~A~~VVi~ 1080 (1173)
.+.|+|.|.+|..++..|...| .+++++|.++++.+. +.+.. ...+++ .+. + .+.+||.++++
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~--~d~---~--~l~~aDiViit 74 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYA--GDY---A--DCKGADVVVIT 74 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEee--CCH---H--HhCCCCEEEEc
Confidence 3789999999999999999999 589999999877652 22111 011121 122 2 26789999999
Q ss_pred cCCCc-----------chHH----HHHHHHhhCCCceEEEEecChh-hHHHHHHC-C--CCeeecC-CcHHHHHHHHHHH
Q 001051 1081 LDTPG-----------ANYR----TVWALSKYFPNVKTFVRAHDID-HGLNLEKA-G--ATAVVPE-TLEPSLQLAAAVL 1140 (1173)
Q Consensus 1081 t~Dd~-----------~Ni~----iv~~ar~l~p~~~IIara~d~e-~~~~L~~a-G--Ad~VI~p-~~~aa~~LA~~vl 1140 (1173)
.+.+. .|.. ++..+++..|+..+++..+-.+ ....+.+. | -.+|+-- +.+=+.++-..+-
T Consensus 75 a~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d~~~~~~~~~sg~p~~~viG~gt~LDs~R~~~~la 154 (308)
T cd05292 75 AGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDVLTYVAYKLSGLPPNRVIGSGTVLDTARFRYLLG 154 (308)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHeecccchhhHHHHHHHHH
Confidence 87642 2433 4456677788866666654222 33333332 3 2345533 3333455555555
Q ss_pred HhcCCCHHH
Q 001051 1141 AQAKLPASE 1149 (1173)
Q Consensus 1141 ~~l~~~~~e 1149 (1173)
..++++..+
T Consensus 155 ~~~~v~~~~ 163 (308)
T cd05292 155 EHLGVDPRS 163 (308)
T ss_pred HHhCCCccc
Confidence 566555433
No 298
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=81.50 E-value=7.1 Score=44.65 Aligned_cols=38 Identities=24% Similarity=0.276 Sum_probs=34.5
Q ss_pred ccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHh
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAI 1047 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~ 1047 (1173)
+++.|+|.|.+|..++..|...|++|+++|.+++..++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~ 42 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSR 42 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHH
Confidence 35889999999999999999999999999999988764
No 299
>PRK06194 hypothetical protein; Provisional
Probab=81.32 E-value=1.7 Score=48.76 Aligned_cols=73 Identities=14% Similarity=0.095 Sum_probs=52.9
Q ss_pred ccccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhh----hhCC--CCEEEecCCCHHHHhhcCc------cccCE
Q 001051 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIG----RALD--LPVYFGDAGSREVLHKVGA------ERACA 1076 (1173)
Q Consensus 1010 ~hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l----~~~g--~~vi~GDasd~e~Le~agI------~~A~~ 1076 (1173)
+.++|.| .|.+|..+++.|.++|+.|+++|++++..+.. ...+ ..++.+|.+|++.++++-- ...|.
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~id~ 86 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGAVHL 86 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 4567776 47899999999999999999999987665433 2223 4458999999988876421 23577
Q ss_pred EEEecC
Q 001051 1077 AAITLD 1082 (1173)
Q Consensus 1077 VVi~t~ 1082 (1173)
++-...
T Consensus 87 vi~~Ag 92 (287)
T PRK06194 87 LFNNAG 92 (287)
T ss_pred EEECCC
Confidence 766553
No 300
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=81.29 E-value=0.55 Score=55.21 Aligned_cols=111 Identities=19% Similarity=0.231 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHhhcccchh--HHHHHhHhhHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHH
Q 001051 832 ILGTSLLTARAGLSMALGAFLAGLLLAETEFS--LQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLI 909 (1173)
Q Consensus 832 ~lg~~~lae~lGLS~vLGAFvAGLiLsn~~~~--~~l~e~l~~~~~~LlpiFFv~iGm~Idl~~L~~~~~lilllvvllv 909 (1173)
++....+.+.++++..++-+++|++++..... +.-....+.+.++.++++....|.++|+..+...+...+......+
T Consensus 8 ~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~~~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~~~~~~~ 87 (380)
T PF00999_consen 8 AFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLEPDNPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRALALGLVGF 87 (380)
T ss_dssp ----------------------------------------S-SSHHHHS--SSHHHHTTGGGG-----------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccee
Confidence 33333468889999999999999999987543 1113445566788888888899999999998876655443333333
Q ss_pred HHHHHH-HHHHHH---hcCCChhhhhhhhhcccCCcc
Q 001051 910 GGKTIL-VALVGR---LFGVSVISAIRTGLLLAPGGE 942 (1173)
Q Consensus 910 v~K~l~-v~l~~~---l~g~~~real~lGl~LaprGe 942 (1173)
+.-.+. .+.... ..|+++.+++.+|..+++-..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts~ 124 (380)
T PF00999_consen 88 LLPFILVGFLLSFFLFILGLSWAEALLLGAILSATSP 124 (380)
T ss_dssp --------------------------TTHHHHTT--H
T ss_pred eehhhHHHHHHHHhhccchhhhHHHhhhHHhhhcccc
Confidence 333333 333332 468899999998888765543
No 301
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=81.27 E-value=4.6 Score=44.26 Aligned_cols=67 Identities=18% Similarity=0.090 Sum_probs=47.3
Q ss_pred ccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhC--------CCC--EEEecCCCHHHHhhcCccccCEEEEe
Q 001051 1012 IILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL--------DLP--VYFGDAGSREVLHKVGAERACAAAIT 1080 (1173)
Q Consensus 1012 vIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~--------g~~--vi~GDasd~e~Le~agI~~A~~VVi~ 1080 (1173)
+.|+| .|.+|..++..|.+.|++|++.++++++.+.+.+. |.. +... .+.+. ++++|.||++
T Consensus 3 I~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~--~~~ea-----~~~aDvVila 75 (219)
T TIGR01915 3 IAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGA--DNAEA-----AKRADVVILA 75 (219)
T ss_pred EEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEe--ChHHH-----HhcCCEEEEE
Confidence 67887 89999999999999999999999999887765432 211 1111 11222 3467888888
Q ss_pred cCCCc
Q 001051 1081 LDTPG 1085 (1173)
Q Consensus 1081 t~Dd~ 1085 (1173)
++...
T Consensus 76 vp~~~ 80 (219)
T TIGR01915 76 VPWDH 80 (219)
T ss_pred CCHHH
Confidence 87763
No 302
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.22 E-value=3 Score=47.82 Aligned_cols=38 Identities=13% Similarity=0.284 Sum_probs=35.4
Q ss_pred ccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHh
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAI 1047 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~ 1047 (1173)
+++.|+|.|..|..++..+...|++|++.|.+++..++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~ 43 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATA 43 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence 36889999999999999999999999999999998876
No 303
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=81.14 E-value=61 Score=36.26 Aligned_cols=60 Identities=25% Similarity=0.257 Sum_probs=45.1
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHH
Q 001051 150 TDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVH 221 (1173)
Q Consensus 150 ~~~~~~~l~~~~~~~e~a~~~~~~~e~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~ 221 (1173)
+.+.++-|++|+..+..+..+-.-||.+..+..+.+=-++..|..|-..=| |-.|++|+.
T Consensus 33 ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~------------E~LAr~al~ 92 (225)
T COG1842 33 IRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGN------------EDLAREALE 92 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------------HHHHHHHHH
Confidence 567778888888888888888888888888888777777766666655444 556666655
No 304
>PRK08339 short chain dehydrogenase; Provisional
Probab=81.09 E-value=2 Score=47.98 Aligned_cols=73 Identities=14% Similarity=0.123 Sum_probs=52.9
Q ss_pred ccccccCC-CccHHHHHHHHHhCCCCeEEecCCchHHHhhhh-------CCCCEEEecCCCHHHHhhcC-----ccccCE
Q 001051 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-------LDLPVYFGDAGSREVLHKVG-----AERACA 1076 (1173)
Q Consensus 1010 ~hvIIiG~-G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~-------~g~~vi~GDasd~e~Le~ag-----I~~A~~ 1076 (1173)
+.++|.|. +.+|..+++.|.++|++|++++++++..+...+ ....++.+|.+|++.++++- ....|.
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~iD~ 88 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGEPDI 88 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCCCcE
Confidence 35677775 679999999999999999999999877654432 13557889999998776541 124666
Q ss_pred EEEecC
Q 001051 1077 AAITLD 1082 (1173)
Q Consensus 1077 VVi~t~ 1082 (1173)
+|...+
T Consensus 89 lv~nag 94 (263)
T PRK08339 89 FFFSTG 94 (263)
T ss_pred EEECCC
Confidence 665543
No 305
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=81.04 E-value=2 Score=47.25 Aligned_cols=72 Identities=13% Similarity=0.092 Sum_probs=53.8
Q ss_pred ccccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhC---CCCEEEecCCCHHHHhhcCc------cccCEEEE
Q 001051 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL---DLPVYFGDAGSREVLHKVGA------ERACAAAI 1079 (1173)
Q Consensus 1010 ~hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~---g~~vi~GDasd~e~Le~agI------~~A~~VVi 1079 (1173)
+.++|.| .+.+|..+++.|.++|++|++++++.+..+...+. ....+.+|.++++.++++-- ...+.+|-
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~ 86 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVERFGGIDILFN 86 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 3567776 58899999999999999999999998877655332 35577899999988765411 24677765
Q ss_pred ec
Q 001051 1080 TL 1081 (1173)
Q Consensus 1080 ~t 1081 (1173)
..
T Consensus 87 ~a 88 (257)
T PRK07067 87 NA 88 (257)
T ss_pred CC
Confidence 44
No 306
>PRK11281 hypothetical protein; Provisional
Probab=81.03 E-value=26 Score=47.45 Aligned_cols=134 Identities=22% Similarity=0.301 Sum_probs=63.0
Q ss_pred HHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhh
Q 001051 196 WNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAEN 275 (1173)
Q Consensus 196 ~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (1173)
..+.+.|++.++++-..+..+++--+ .+.-|.++++-|.+.++..+...+++.. +........+=|..+..-+.
T Consensus 62 ~~~l~~tL~~L~qi~~~~~~~~~L~k----~l~~Ap~~l~~a~~~Le~Lk~~~~~~~~--~~~~~~Sl~qLEq~L~q~~~ 135 (1113)
T PRK11281 62 QQDLEQTLALLDKIDRQKEETEQLKQ----QLAQAPAKLRQAQAELEALKDDNDEETR--ETLSTLSLRQLESRLAQTLD 135 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHHHHHHH
Confidence 44566666666666555555443333 2333444455555555554443333321 11111122223333344445
Q ss_pred hHHHHHHHHHhhHHHHHHHhhhHHHHHHHH----HHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHH
Q 001051 276 DIKECQANLANCETELRRLQSKKEELQKEV----DRLNEVAEKAQMNALKAEE----DVANIMLLAEQAV 337 (1173)
Q Consensus 276 ~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~----~~~~~~~~~~~~~~~~a~~----~~~~~m~~ae~av 337 (1173)
+..+.|++|+.-+.+|..+|++-+..|+.. .|++|+-. |+++.+++. +....++-||++.
T Consensus 136 ~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~--~L~~~~~~~~~l~~~~~~~l~ae~~~ 203 (1113)
T PRK11281 136 QLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRN--LLKGGKVGGKALRPSQRVLLQAEQAL 203 (1113)
T ss_pred HHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH--HHhCCCCCCCcCCHHHHHHHHHHHHH
Confidence 555666666666666666666666655552 23444332 344433333 3444455555543
No 307
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=81.03 E-value=2.4 Score=49.20 Aligned_cols=71 Identities=20% Similarity=0.229 Sum_probs=50.4
Q ss_pred cccccC-CCccHHHHHHHHHhCCCCeEEecCCch-----HHHhhh-------hCCCCEEEecCCCHHHHhhcCcc-ccCE
Q 001051 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSD-----RVAIGR-------ALDLPVYFGDAGSREVLHKVGAE-RACA 1076 (1173)
Q Consensus 1011 hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e-----~ve~l~-------~~g~~vi~GDasd~e~Le~agI~-~A~~ 1076 (1173)
.++|.| .|-+|..+++.|.+.|++|+++|++++ ..+.+. ..++.++.||.+|.+.+.++--. +.|.
T Consensus 2 ~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ 81 (343)
T TIGR01472 2 IALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIKPTE 81 (343)
T ss_pred eEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCCCCE
Confidence 466777 489999999999999999999998753 222221 13577889999999888664222 3566
Q ss_pred EEEec
Q 001051 1077 AAITL 1081 (1173)
Q Consensus 1077 VVi~t 1081 (1173)
|+=+.
T Consensus 82 ViH~A 86 (343)
T TIGR01472 82 IYNLA 86 (343)
T ss_pred EEECC
Confidence 55443
No 308
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=81.02 E-value=10 Score=49.36 Aligned_cols=86 Identities=14% Similarity=0.115 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHhhcCChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhccccCcHH--HHHHH
Q 001051 655 AIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTA--VVLQV 732 (1173)
Q Consensus 655 ~LaeLGL~~LLF~aGLEldl~~Lrr~~k~il~La~~~vllt~~~vgll~~~llGls~~~ALlLGaiLS~TSpa--VVv~v 732 (1173)
+..++.+++.....|+++|+..+.+ +...........+.- ++.+....++++.++..++.+|.+++.=... ++...
T Consensus 310 ~~~~~llPl~~~~~G~k~di~~i~~-~~~~~~~i~~~~~~K-~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~ 387 (769)
T KOG1650|consen 310 LVSGLLLPLYFAISGLKTDISRINK-WGALIRTILIFGAVK-LLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNT 387 (769)
T ss_pred HHHHHHHHHHHHhhccceeHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHH
Confidence 4456777888888999999999988 332222222222222 3344444457899999999999988865553 44445
Q ss_pred HHhcCCCCCc
Q 001051 733 LQERGESTSR 742 (1173)
Q Consensus 733 L~elg~l~s~ 742 (1173)
-.+.+..+.+
T Consensus 388 ~~~~~~~~~~ 397 (769)
T KOG1650|consen 388 GLDRKILSDE 397 (769)
T ss_pred HhhcCCcccc
Confidence 5555554443
No 309
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=80.97 E-value=5.1 Score=45.72 Aligned_cols=90 Identities=16% Similarity=0.099 Sum_probs=60.4
Q ss_pred cccccccCCCccHHHHHHHHHhCC-CCeEEecCCchHH-----------------------HhhhhCC--CCEE-EecCC
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERL-IPFVALDVRSDRV-----------------------AIGRALD--LPVY-FGDAG 1061 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~g-i~VvVID~D~e~v-----------------------e~l~~~g--~~vi-~GDas 1061 (1173)
..+++|+|.|-+|..+++.|...| -++++||.|.-.. +++++.+ ..+. +-+..
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~~i 109 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDFI 109 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEeccc
Confidence 458999999999999999999999 5899999883221 1222221 2221 12222
Q ss_pred CHHHHhhcCccccCEEEEecCCCcchHHHHHHHHhhC
Q 001051 1062 SREVLHKVGAERACAAAITLDTPGANYRTVWALSKYF 1098 (1173)
Q Consensus 1062 d~e~Le~agI~~A~~VVi~t~Dd~~Ni~iv~~ar~l~ 1098 (1173)
+++...+.-..++|+||.++++......+...+++.+
T Consensus 110 ~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ 146 (268)
T PRK15116 110 TPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNK 146 (268)
T ss_pred ChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcC
Confidence 3444444434479999999988777777777777754
No 310
>PLN02712 arogenate dehydrogenase
Probab=80.95 E-value=4.5 Score=51.83 Aligned_cols=91 Identities=16% Similarity=0.214 Sum_probs=58.8
Q ss_pred cccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchH
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni 1088 (1173)
...+.|+|.|.+|..+++.|.+.|++|+++|++.+. +.+.+.|... . .+.+.+.. ..+|.|+++++.. ...
T Consensus 369 ~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~-~---~~~~el~~---~~aDvVILavP~~-~~~ 439 (667)
T PLN02712 369 KLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSY-F---SDADDLCE---EHPEVILLCTSIL-STE 439 (667)
T ss_pred CCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeE-e---CCHHHHHh---cCCCEEEECCChH-HHH
Confidence 346889999999999999999999999999998654 4455566532 1 22222211 2589999999865 333
Q ss_pred HHHHHHHh--hCCCceEEEEecC
Q 001051 1089 RTVWALSK--YFPNVKTFVRAHD 1109 (1173)
Q Consensus 1089 ~iv~~ar~--l~p~~~IIara~d 1109 (1173)
.++..+.. +.++ .+++-+-+
T Consensus 440 ~vi~~l~~~~lk~g-~ivvDv~S 461 (667)
T PLN02712 440 KVLKSLPFQRLKRS-TLFVDVLS 461 (667)
T ss_pred HHHHHHHHhcCCCC-cEEEECCC
Confidence 33333332 2344 45555533
No 311
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=80.89 E-value=96 Score=34.30 Aligned_cols=49 Identities=12% Similarity=0.207 Sum_probs=35.4
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhchhHHHHHHHh
Q 001051 150 TDELRELLMNAMKELEVAQLNSTMFEEKAQRISEAAIALKDEAANAWNN 198 (1173)
Q Consensus 150 ~~~~~~~l~~~~~~~e~a~~~~~~~e~~~~~~~~~a~~~~~~~~~~~~~ 198 (1173)
+.++++-|.+++..+..+......+|.+...+...+=-+.+.|..|-..
T Consensus 33 irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~ 81 (219)
T TIGR02977 33 IQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSK 81 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 5677778888888887777788888877777776666666666655543
No 312
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=80.88 E-value=6 Score=47.22 Aligned_cols=72 Identities=26% Similarity=0.350 Sum_probs=56.4
Q ss_pred cccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHh--------------hcCccccCE
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLH--------------KVGAERACA 1076 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le--------------~agI~~A~~ 1076 (1173)
.+.|+|.|.+|...+--|.+.|++|+.+|.|+++++.+++...+++. +.=++.|+ +..+.+++.
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~E--pgLe~ll~~~~~~gRl~fTtd~~~a~~~adv 79 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYE--PGLEELLKENLASGRLRFTTDYEEAVKDADV 79 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcC--ccHHHHHHhccccCcEEEEcCHHHHHhcCCE
Confidence 36789999999999999999999999999999999999876665552 22233333 224568899
Q ss_pred EEEecCCC
Q 001051 1077 AAITLDTP 1084 (1173)
Q Consensus 1077 VVi~t~Dd 1084 (1173)
++++++.|
T Consensus 80 ~fIavgTP 87 (414)
T COG1004 80 VFIAVGTP 87 (414)
T ss_pred EEEEcCCC
Confidence 99988766
No 313
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=80.88 E-value=8.9 Score=43.28 Aligned_cols=123 Identities=13% Similarity=0.090 Sum_probs=76.0
Q ss_pred cccccCC-CccHHHHHHHHHhC-CCCeE-EecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcch
Q 001051 1011 HIILCGF-GRVGQIIAQLLSER-LIPFV-ALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1173)
Q Consensus 1011 hvIIiG~-G~~G~~Ia~~L~~~-gi~Vv-VID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~N 1087 (1173)
.+.|+|+ |++|+.+++.+.+. +.+++ ++|.++++.......+.. ...+.+.+. .++|.|+..++-+ ..
T Consensus 3 kV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~----~~~dl~~ll----~~~DvVid~t~p~-~~ 73 (257)
T PRK00048 3 KVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVA----ITDDLEAVL----ADADVLIDFTTPE-AT 73 (257)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCcc----ccCCHHHhc----cCCCEEEECCCHH-HH
Confidence 4789998 99999999999764 55544 588887765443111221 122332222 2588887666433 33
Q ss_pred HHHHHHHHhhCCCceEEEEecChhhHHHHHH--CCCCeeecCCcHHHHHHHHHHHHh
Q 001051 1088 YRTVWALSKYFPNVKTFVRAHDIDHGLNLEK--AGATAVVPETLEPSLQLAAAVLAQ 1142 (1173)
Q Consensus 1088 i~iv~~ar~l~p~~~IIara~d~e~~~~L~~--aGAd~VI~p~~~aa~~LA~~vl~~ 1142 (1173)
...+..+.+...++-+-....+.+..+.+.+ .++..++.|.+-.+..+...++..
T Consensus 74 ~~~~~~al~~G~~vvigttG~s~~~~~~l~~aa~~~~v~~s~n~s~g~~~~~~l~~~ 130 (257)
T PRK00048 74 LENLEFALEHGKPLVIGTTGFTEEQLAELEEAAKKIPVVIAPNFSIGVNLLMKLAEK 130 (257)
T ss_pred HHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhcCCCEEEECcchHHHHHHHHHHHH
Confidence 5566666666544222212235666666654 578889999998888877777663
No 314
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=80.88 E-value=7.8 Score=44.11 Aligned_cols=103 Identities=14% Similarity=0.076 Sum_probs=58.6
Q ss_pred cccccCCCccHHHHHHHHHhCC----CCeEEecCCc-hHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCc
Q 001051 1011 HIILCGFGRVGQIIAQLLSERL----IPFVALDVRS-DRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~g----i~VvVID~D~-e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~ 1085 (1173)
++.++|.|.+|..+++.|.+.| ++++++++++ ++.+.+......+.. ..+.. ++ +.++|.|+++++...
T Consensus 3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~--~~~~~---e~-~~~aDvVilavpp~~ 76 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVEL--ADNEA---EI-FTKCDHSFICVPPLA 76 (277)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEE--eCCHH---HH-HhhCCEEEEecCHHH
Confidence 4678999999999999999887 6899999865 444544332111111 11211 11 347899999998543
Q ss_pred chHHHHHHHHhh-CCCceEEEEecChhhHHHHHHCC
Q 001051 1086 ANYRTVWALSKY-FPNVKTFVRAHDIDHGLNLEKAG 1120 (1173)
Q Consensus 1086 ~Ni~iv~~ar~l-~p~~~IIara~d~e~~~~L~~aG 1120 (1173)
-..+...++.. .++..++..+......++-+..+
T Consensus 77 -~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~ 111 (277)
T PRK06928 77 -VLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITP 111 (277)
T ss_pred -HHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcC
Confidence 22333334332 34444555444444433333334
No 315
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=80.84 E-value=2.2 Score=54.27 Aligned_cols=76 Identities=17% Similarity=0.188 Sum_probs=56.9
Q ss_pred ccccccccCCCccHHHHHHHHHhCCCCeEEecCCch---------------------HHHhhhhCCCCEEEecCCCHH-H
Q 001051 1008 LQDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSD---------------------RVAIGRALDLPVYFGDAGSRE-V 1065 (1173)
Q Consensus 1008 lk~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e---------------------~ve~l~~~g~~vi~GDasd~e-~ 1065 (1173)
..++++|+|.|..|...+..|.+.|++|+++|.++. ..+.+++.|+.+..+.....+ .
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~ 388 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDIT 388 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcCC
Confidence 357899999999999999999999999999998863 456667788887766532211 2
Q ss_pred HhhcCccccCEEEEecCCC
Q 001051 1066 LHKVGAERACAAAITLDTP 1084 (1173)
Q Consensus 1066 Le~agI~~A~~VVi~t~Dd 1084 (1173)
++.+ ..+.|+|+++++..
T Consensus 389 ~~~l-~~~~DaV~latGa~ 406 (639)
T PRK12809 389 FSDL-TSEYDAVFIGVGTY 406 (639)
T ss_pred HHHH-HhcCCEEEEeCCCC
Confidence 3222 24689999998763
No 316
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=80.82 E-value=5.8 Score=38.99 Aligned_cols=70 Identities=14% Similarity=0.037 Sum_probs=46.9
Q ss_pred HHHHhhcCccccCEEEEecCCCc---chHHHHHHHHhhCC-CceEEEEecChh-hHHHHHHCCCCeeecCCcHHH
Q 001051 1063 REVLHKVGAERACAAAITLDTPG---ANYRTVWALSKYFP-NVKTFVRAHDID-HGLNLEKAGATAVVPETLEPS 1132 (1173)
Q Consensus 1063 ~e~Le~agI~~A~~VVi~t~Dd~---~Ni~iv~~ar~l~p-~~~IIara~d~e-~~~~L~~aGAd~VI~p~~~aa 1132 (1173)
++..+.+.-.+++.|.++..+.. .-..++..+|+.+| +++|++=-.-.. ..+.++..|+|.++.+..++.
T Consensus 40 ~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~~~~~~~G~D~~~~~~~~~~ 114 (119)
T cd02067 40 EEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTRDFKFLKEIGVDAYFGPATEAV 114 (119)
T ss_pred HHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECCCCChhHHHHHHcCCeEEECCHHHHH
Confidence 34556666668888887765432 22456678888888 777766444332 346899999999998866443
No 317
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.76 E-value=13 Score=42.90 Aligned_cols=80 Identities=21% Similarity=0.289 Sum_probs=57.6
Q ss_pred ccccccCCC-ccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchH
Q 001051 1010 DHIILCGFG-RVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1173)
Q Consensus 1010 ~hvIIiG~G-~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni 1088 (1173)
+.++|.|.| -.|+.++.++.++|..++++|.|.+..++-.+ ..++.| ++.+-++-..|++.-.
T Consensus 39 ~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~--------------~~~~~g--~~~~y~cdis~~eei~ 102 (300)
T KOG1201|consen 39 EIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVK--------------EIRKIG--EAKAYTCDISDREEIY 102 (300)
T ss_pred CEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHH--------------HHHhcC--ceeEEEecCCCHHHHH
Confidence 345566655 59999999999999999999999876543321 222333 6777777777777777
Q ss_pred HHHHHHHhhCCCceEEE
Q 001051 1089 RTVWALSKYFPNVKTFV 1105 (1173)
Q Consensus 1089 ~iv~~ar~l~p~~~IIa 1105 (1173)
.++..+++...++.|++
T Consensus 103 ~~a~~Vk~e~G~V~ILV 119 (300)
T KOG1201|consen 103 RLAKKVKKEVGDVDILV 119 (300)
T ss_pred HHHHHHHHhcCCceEEE
Confidence 77888888777766665
No 318
>PRK06057 short chain dehydrogenase; Provisional
Probab=80.74 E-value=2.7 Score=46.33 Aligned_cols=73 Identities=11% Similarity=0.020 Sum_probs=54.9
Q ss_pred ccccccCC-CccHHHHHHHHHhCCCCeEEecCCchHHHhhh-hCCCCEEEecCCCHHHHhhcCc------cccCEEEEec
Q 001051 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGR-ALDLPVYFGDAGSREVLHKVGA------ERACAAAITL 1081 (1173)
Q Consensus 1010 ~hvIIiG~-G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~-~~g~~vi~GDasd~e~Le~agI------~~A~~VVi~t 1081 (1173)
+.++|.|. |.+|..+++.|.++|+.|++++++++..+... +.+..++..|.++++.++++-- .+.|.+|-..
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~~a 87 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVGGLFVPTDVTDEDAVNALFDTAAETYGSVDIAFNNA 87 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcCCcEEEeeCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 45777776 88999999999999999999999987765543 3344688899999987754321 2467776655
Q ss_pred C
Q 001051 1082 D 1082 (1173)
Q Consensus 1082 ~ 1082 (1173)
+
T Consensus 88 g 88 (255)
T PRK06057 88 G 88 (255)
T ss_pred C
Confidence 3
No 319
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=80.71 E-value=2 Score=46.98 Aligned_cols=73 Identities=14% Similarity=0.023 Sum_probs=54.9
Q ss_pred ccccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhh----hC--CCCEEEecCCCHHHHhhcC------ccccCE
Q 001051 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGR----AL--DLPVYFGDAGSREVLHKVG------AERACA 1076 (1173)
Q Consensus 1010 ~hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~----~~--g~~vi~GDasd~e~Le~ag------I~~A~~ 1076 (1173)
++++|.| .|.+|..+++.|.++|++|++++++++..+.+. .. ....+.+|.++++.+.++- ....+.
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~ 84 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFGGVDI 84 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 4677777 689999999999999999999999987665432 22 3557899999999876541 135677
Q ss_pred EEEecC
Q 001051 1077 AAITLD 1082 (1173)
Q Consensus 1077 VVi~t~ 1082 (1173)
+|....
T Consensus 85 vi~~a~ 90 (258)
T PRK12429 85 LVNNAG 90 (258)
T ss_pred EEECCC
Confidence 776553
No 320
>PRK07825 short chain dehydrogenase; Provisional
Probab=80.62 E-value=2.3 Score=47.42 Aligned_cols=72 Identities=10% Similarity=-0.114 Sum_probs=53.8
Q ss_pred ccccccCC-CccHHHHHHHHHhCCCCeEEecCCchHHHhhh-hC-CCCEEEecCCCHHHHhhcC------ccccCEEEEe
Q 001051 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGR-AL-DLPVYFGDAGSREVLHKVG------AERACAAAIT 1080 (1173)
Q Consensus 1010 ~hvIIiG~-G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~-~~-g~~vi~GDasd~e~Le~ag------I~~A~~VVi~ 1080 (1173)
+.++|.|. |.+|..+++.|.++|++|++++++++..+... +. ...++.+|.++++.++++- ....|.+|..
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~~ 85 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEADLGPIDVLVNN 85 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 35677774 78999999999999999999999988876553 22 3678899999998764321 1346777655
Q ss_pred c
Q 001051 1081 L 1081 (1173)
Q Consensus 1081 t 1081 (1173)
.
T Consensus 86 a 86 (273)
T PRK07825 86 A 86 (273)
T ss_pred C
Confidence 4
No 321
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=80.54 E-value=2.5 Score=45.89 Aligned_cols=71 Identities=18% Similarity=0.152 Sum_probs=52.7
Q ss_pred cccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHH----hhhhCC--CCEEEecCCCHHHHhhcC--c----cccCEE
Q 001051 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVA----IGRALD--LPVYFGDAGSREVLHKVG--A----ERACAA 1077 (1173)
Q Consensus 1011 hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve----~l~~~g--~~vi~GDasd~e~Le~ag--I----~~A~~V 1077 (1173)
.++|.| .|.+|..+++.|.++|+.|++++++++... .++..+ ..++.+|.++++.++++- + ...+.+
T Consensus 8 ~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~v 87 (251)
T PRK12826 8 VALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFGRLDIL 87 (251)
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 466666 789999999999999999999999965443 233333 567889999998876642 1 256777
Q ss_pred EEec
Q 001051 1078 AITL 1081 (1173)
Q Consensus 1078 Vi~t 1081 (1173)
|-..
T Consensus 88 i~~a 91 (251)
T PRK12826 88 VANA 91 (251)
T ss_pred EECC
Confidence 6665
No 322
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=80.38 E-value=1.2 Score=52.49 Aligned_cols=63 Identities=22% Similarity=0.243 Sum_probs=44.1
Q ss_pred ccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCcc
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAE 1072 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~ 1072 (1173)
-.|+|+|.|..|..+|-.|.++|++|+++|+++.........+...+.-.+...+.|+++|+.
T Consensus 7 ~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~ 69 (392)
T PRK08773 7 RDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVW 69 (392)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCch
Confidence 468999999999999999999999999999986421111111233444455556667776653
No 323
>PRK07454 short chain dehydrogenase; Provisional
Probab=80.30 E-value=2.9 Score=45.51 Aligned_cols=73 Identities=11% Similarity=0.031 Sum_probs=53.7
Q ss_pred ccccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhh------CCCCEEEecCCCHHHHhhcC------ccccCE
Q 001051 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA------LDLPVYFGDAGSREVLHKVG------AERACA 1076 (1173)
Q Consensus 1010 ~hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~------~g~~vi~GDasd~e~Le~ag------I~~A~~ 1076 (1173)
+.++|.| .|.+|..+++.|.++|.+|++++++++..+.+.+ ....++.+|.++++.+.++= ..+.|.
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 86 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGCPDV 86 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 3466666 5889999999999999999999999876654422 23557889999998765541 135678
Q ss_pred EEEecC
Q 001051 1077 AAITLD 1082 (1173)
Q Consensus 1077 VVi~t~ 1082 (1173)
+|-..+
T Consensus 87 lv~~ag 92 (241)
T PRK07454 87 LINNAG 92 (241)
T ss_pred EEECCC
Confidence 776554
No 324
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=80.25 E-value=32 Score=41.86 Aligned_cols=73 Identities=19% Similarity=0.282 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc--CCChhhhhhhhhcccCCcchhhHH
Q 001051 875 GLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRLF--GVSVISAIRTGLLLAPGGEFAFVA 947 (1173)
Q Consensus 875 ~~LlpiFFv~iGm~Idl~~L~~~~~lilllvvllvv~K~l~v~l~~~l~--g~~~real~lGl~LaprGevalvl 947 (1173)
.+++|+.-..-|+++|...+..++..++.+....++.-.+++....++. ++++..++.+|-.++|-.-+....
T Consensus 64 ~l~l~ilLf~~g~~l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~~ 138 (429)
T COG0025 64 VLFLAILLFAGGLELDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVSP 138 (429)
T ss_pred HHHHHHHHHHhHhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhHH
Confidence 6777777778899999999988876665555555555555444444444 888889999998888877765543
No 325
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=80.21 E-value=2 Score=47.28 Aligned_cols=73 Identities=8% Similarity=0.023 Sum_probs=53.8
Q ss_pred ccccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhh----hhCC--CCEEEecCCCHHHHhhcC------ccccCE
Q 001051 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIG----RALD--LPVYFGDAGSREVLHKVG------AERACA 1076 (1173)
Q Consensus 1010 ~hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l----~~~g--~~vi~GDasd~e~Le~ag------I~~A~~ 1076 (1173)
+.++|.| .|.+|..+++.|.++|++|++++++++..+.. ++.| ...+.+|.++++.++++- ....|.
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~ 90 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIGPIDI 90 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcCCCCE
Confidence 4577777 48899999999999999999999998765433 2323 456789999998776552 124677
Q ss_pred EEEecC
Q 001051 1077 AAITLD 1082 (1173)
Q Consensus 1077 VVi~t~ 1082 (1173)
+|-...
T Consensus 91 li~~ag 96 (255)
T PRK07523 91 LVNNAG 96 (255)
T ss_pred EEECCC
Confidence 776664
No 326
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=79.99 E-value=2.6 Score=53.83 Aligned_cols=75 Identities=17% Similarity=0.214 Sum_probs=55.4
Q ss_pred cccccccCCCccHHHHHHHHHhCCCCeEEecCCchH---------------------HHhhhhCCCCEEEecCCCHH-HH
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDR---------------------VAIGRALDLPVYFGDAGSRE-VL 1066 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~---------------------ve~l~~~g~~vi~GDasd~e-~L 1066 (1173)
.++++|+|.|..|...+..|.+.|++|+++|.++.. ++.+.+.|..+..+.....+ .+
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv~~ 272 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDITL 272 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCccCH
Confidence 468999999999999999999999999999987531 45566778888777643211 12
Q ss_pred hhcCccccCEEEEecCCC
Q 001051 1067 HKVGAERACAAAITLDTP 1084 (1173)
Q Consensus 1067 e~agI~~A~~VVi~t~Dd 1084 (1173)
+... ..+|.|+++++..
T Consensus 273 ~~~~-~~~DaVilAtGa~ 289 (652)
T PRK12814 273 EELQ-KEFDAVLLAVGAQ 289 (652)
T ss_pred HHHH-hhcCEEEEEcCCC
Confidence 2222 2489999988764
No 327
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=79.97 E-value=2.6 Score=48.76 Aligned_cols=70 Identities=17% Similarity=0.179 Sum_probs=51.9
Q ss_pred cccccC-CCccHHHHHHHHHhCC--CCeEEecCCchHHHhhh----hCCCCEEEecCCCHHHHhhcCccccCEEEEec
Q 001051 1011 HIILCG-FGRVGQIIAQLLSERL--IPFVALDVRSDRVAIGR----ALDLPVYFGDAGSREVLHKVGAERACAAAITL 1081 (1173)
Q Consensus 1011 hvIIiG-~G~~G~~Ia~~L~~~g--i~VvVID~D~e~ve~l~----~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t 1081 (1173)
.++|.| .|-+|..+++.|.++| ..|+++++++.....+. ..+..++.||.+|++.+.++ +++.|.||-+.
T Consensus 6 ~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~-~~~iD~Vih~A 82 (324)
T TIGR03589 6 SILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRA-LRGVDYVVHAA 82 (324)
T ss_pred EEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHH-HhcCCEEEECc
Confidence 466666 5899999999999886 68999998866543322 12467889999999998775 34578877644
No 328
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=79.87 E-value=2.4 Score=44.94 Aligned_cols=55 Identities=18% Similarity=0.377 Sum_probs=43.7
Q ss_pred cccccccCCCcc-HHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCc
Q 001051 1009 QDHIILCGFGRV-GQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1173)
Q Consensus 1009 k~hvIIiG~G~~-G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~ 1085 (1173)
.++++|+|.|.+ |..+++.|.++|..+++++++.+. +.+ .+.+||.||.+++.+.
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~---------------------l~~-~l~~aDiVIsat~~~~ 99 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKN---------------------LKE-HTKQADIVIVAVGKPG 99 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchh---------------------HHH-HHhhCCEEEEcCCCCc
Confidence 467999999995 888999999999999999976321 111 4668899999998874
No 329
>PRK05866 short chain dehydrogenase; Provisional
Probab=79.87 E-value=2.9 Score=47.60 Aligned_cols=73 Identities=15% Similarity=0.112 Sum_probs=54.2
Q ss_pred ccccccCC-CccHHHHHHHHHhCCCCeEEecCCchHHHhhhh----CC--CCEEEecCCCHHHHhhc------CccccCE
Q 001051 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA----LD--LPVYFGDAGSREVLHKV------GAERACA 1076 (1173)
Q Consensus 1010 ~hvIIiG~-G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~----~g--~~vi~GDasd~e~Le~a------gI~~A~~ 1076 (1173)
+.++|.|. |.+|..+++.|.++|++|++++++++..+.+.+ .+ ..++.+|.+|++.+.++ .....|.
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~id~ 120 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIGGVDI 120 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 45677774 889999999999999999999999877654432 22 45778999999876543 1236788
Q ss_pred EEEecC
Q 001051 1077 AAITLD 1082 (1173)
Q Consensus 1077 VVi~t~ 1082 (1173)
+|-..+
T Consensus 121 li~~AG 126 (293)
T PRK05866 121 LINNAG 126 (293)
T ss_pred EEECCC
Confidence 776643
No 330
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=79.81 E-value=2.3 Score=45.17 Aligned_cols=91 Identities=16% Similarity=0.154 Sum_probs=57.7
Q ss_pred cccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCc--c
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPG--A 1086 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~--~ 1086 (1173)
...+.|+|+|++|+.+++.|...|.+|++.|+...........++. ..+.+.+ +.++|.|++..+-.. .
T Consensus 36 g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~-----~~~l~el----l~~aDiv~~~~plt~~T~ 106 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVE-----YVSLDEL----LAQADIVSLHLPLTPETR 106 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEE-----ESSHHHH----HHH-SEEEE-SSSSTTTT
T ss_pred CCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccce-----eeehhhh----cchhhhhhhhhccccccc
Confidence 4568899999999999999999999999999998876533333331 1122222 235888888887543 3
Q ss_pred hHHHHHHHHhhCCCceEEEEec
Q 001051 1087 NYRTVWALSKYFPNVKTFVRAH 1108 (1173)
Q Consensus 1087 Ni~iv~~ar~l~p~~~IIara~ 1108 (1173)
++.-...+..+-++..+|-.++
T Consensus 107 ~li~~~~l~~mk~ga~lvN~aR 128 (178)
T PF02826_consen 107 GLINAEFLAKMKPGAVLVNVAR 128 (178)
T ss_dssp TSBSHHHHHTSTTTEEEEESSS
T ss_pred eeeeeeeeeccccceEEEeccc
Confidence 3334445555656654444333
No 331
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.77 E-value=2.2 Score=46.17 Aligned_cols=73 Identities=19% Similarity=0.155 Sum_probs=53.4
Q ss_pred ccccccCC-CccHHHHHHHHHhCCCCeEEe-cCCchHHHhhhh----C--CCCEEEecCCCHHHHhhcC------ccccC
Q 001051 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVAL-DVRSDRVAIGRA----L--DLPVYFGDAGSREVLHKVG------AERAC 1075 (1173)
Q Consensus 1010 ~hvIIiG~-G~~G~~Ia~~L~~~gi~VvVI-D~D~e~ve~l~~----~--g~~vi~GDasd~e~Le~ag------I~~A~ 1075 (1173)
+.++|.|. |.+|..+++.|.+.|++++++ +++++..+.+.+ . ...++.+|.++++.+.++= ....+
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 85 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKFGKID 85 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence 45677764 899999999999999999999 998876644322 2 2567889999999876541 12577
Q ss_pred EEEEecC
Q 001051 1076 AAAITLD 1082 (1173)
Q Consensus 1076 ~VVi~t~ 1082 (1173)
.+|....
T Consensus 86 ~vi~~ag 92 (247)
T PRK05565 86 ILVNNAG 92 (247)
T ss_pred EEEECCC
Confidence 7776553
No 332
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=79.76 E-value=15 Score=40.48 Aligned_cols=67 Identities=16% Similarity=0.032 Sum_probs=56.7
Q ss_pred ccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecC
Q 001051 1014 LCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLD 1082 (1173)
Q Consensus 1014 IiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~ 1082 (1173)
.=|.|.+|..+++.|.+.|++|+++-++++....+. .+..+..+|..++.+|..+-- +.+.++.+.+
T Consensus 6 ~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~-~~v~~~~~d~~~~~~l~~a~~-G~~~~~~i~~ 72 (275)
T COG0702 6 TGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA-GGVEVVLGDLRDPKSLVAGAK-GVDGVLLISG 72 (275)
T ss_pred EecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc-CCcEEEEeccCCHhHHHHHhc-cccEEEEEec
Confidence 345799999999999999999999999999999888 899999999999999998643 4555444444
No 333
>PLN02712 arogenate dehydrogenase
Probab=79.74 E-value=3.3 Score=53.03 Aligned_cols=94 Identities=17% Similarity=0.184 Sum_probs=60.0
Q ss_pred ccccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcch
Q 001051 1008 LQDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1173)
Q Consensus 1008 lk~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~N 1087 (1173)
.+..+.|+|.|.+|..+++.|.+.|++|+++|++... +.+++.|... ..+.+ ++-..++|.|+++++... .
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~----~~d~~---e~~~~~aDvViLavP~~~-~ 121 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSF----FLDPH---DLCERHPDVILLCTSIIS-T 121 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEE----eCCHH---HHhhcCCCEEEEcCCHHH-H
Confidence 3456999999999999999999999999999998544 4455566432 22222 221235899999998653 2
Q ss_pred HHHHHHHH--hhCCCceEEEEecChh
Q 001051 1088 YRTVWALS--KYFPNVKTFVRAHDID 1111 (1173)
Q Consensus 1088 i~iv~~ar--~l~p~~~IIara~d~e 1111 (1173)
..+...+. .+.++ .+++-+-+..
T Consensus 122 ~~vl~~l~~~~l~~g-~iVvDv~SvK 146 (667)
T PLN02712 122 ENVLKSLPLQRLKRN-TLFVDVLSVK 146 (667)
T ss_pred HHHHHhhhhhcCCCC-eEEEECCCCc
Confidence 22332222 12334 3666555443
No 334
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=79.67 E-value=1.1e+02 Score=43.90 Aligned_cols=162 Identities=20% Similarity=0.269 Sum_probs=94.9
Q ss_pred CcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-------H---HHHHHhch-hHHHHHHHhhhHhHHHHHHHHhHHHHHH
Q 001051 149 TTDELRELLMNAMKELEVAQLNSTMFEEKAQR-------I---SEAAIALK-DEAANAWNNVNVTLDMVHEIVNEECIAK 217 (1173)
Q Consensus 149 ~~~~~~~~l~~~~~~~e~a~~~~~~~e~~~~~-------~---~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~a~ 217 (1173)
.++.-++=||.|..|+|.+ -.+=|.|..+ + .|.-+.-+ ++....|.+.+.+++++|.....|.-+|
T Consensus 1523 ~le~e~~elQ~aLeElE~~---le~eE~~~lr~~~~~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k 1599 (1930)
T KOG0161|consen 1523 RLEQEKEELQAALEELEAA---LEAEEDKKLRLQLELQQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSK 1599 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHH---hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3455555566666666653 2222222222 1 12334444 4568999999999999999999888887
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHHHh
Q 001051 218 EAVHKA--TMALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRRLQ 295 (1173)
Q Consensus 218 ~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 295 (1173)
..+-.. .|...+-|...++ +...... .|.-+-.++....+-..|.+..+|++...+--++++..+
T Consensus 1600 ~e~~r~KKkle~di~elE~~l--d~ank~~-----------~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~ae 1666 (1930)
T KOG0161|consen 1600 SEALRSKKKLEGDINELEIQL--DHANKAN-----------EDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAE 1666 (1930)
T ss_pred HHHHhhhhhhhcchHHHHHHH--HHHHHhh-----------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655433 2222233322222 1111110 112223334445566677778888887777777777777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 001051 296 SKKEELQKEVDRLNEVAEKAQMNALKAEEDV 326 (1173)
Q Consensus 296 ~~~~~~q~~~~~~~~~~~~~~~~~~~a~~~~ 326 (1173)
.|...||.|...|.+..+.+.-+-..||.+.
T Consensus 1667 rr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~ 1697 (1930)
T KOG0161|consen 1667 RRLAALQAELEELREKLEALERARRQAELEL 1697 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 7777777777777777766666655555543
No 335
>PRK05867 short chain dehydrogenase; Provisional
Probab=79.65 E-value=2.1 Score=47.03 Aligned_cols=72 Identities=10% Similarity=-0.001 Sum_probs=53.5
Q ss_pred ccccccCC-CccHHHHHHHHHhCCCCeEEecCCchHHHhhhh----C--CCCEEEecCCCHHHHhhcC------ccccCE
Q 001051 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA----L--DLPVYFGDAGSREVLHKVG------AERACA 1076 (1173)
Q Consensus 1010 ~hvIIiG~-G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~----~--g~~vi~GDasd~e~Le~ag------I~~A~~ 1076 (1173)
+.++|.|. +.+|..+++.|.++|.+|++++++++..+...+ . ....+.+|.++++.++++- ....|.
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~ 89 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGGIDI 89 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence 45777775 779999999999999999999999877655432 2 3456789999998876541 135677
Q ss_pred EEEec
Q 001051 1077 AAITL 1081 (1173)
Q Consensus 1077 VVi~t 1081 (1173)
+|-..
T Consensus 90 lv~~a 94 (253)
T PRK05867 90 AVCNA 94 (253)
T ss_pred EEECC
Confidence 76544
No 336
>PRK08219 short chain dehydrogenase; Provisional
Probab=79.46 E-value=3.5 Score=44.07 Aligned_cols=71 Identities=14% Similarity=0.066 Sum_probs=54.9
Q ss_pred cccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhh--CCCCEEEecCCCHHHHhhcC--ccccCEEEEecC
Q 001051 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA--LDLPVYFGDAGSREVLHKVG--AERACAAAITLD 1082 (1173)
Q Consensus 1011 hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~--~g~~vi~GDasd~e~Le~ag--I~~A~~VVi~t~ 1082 (1173)
.++|.| .|.+|..+++.|.++ +.|++++++++..+.+.+ .+..++.+|.++++.++++- ..+.+.+|-+..
T Consensus 5 ~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag 80 (227)
T PRK08219 5 TALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELAAELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVHNAG 80 (227)
T ss_pred EEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHHHhccceEEecCCCCHHHHHHHHHhcCCCCEEEECCC
Confidence 466666 588999999999988 999999999877655532 26788999999998887642 225788877654
No 337
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=79.43 E-value=2.7 Score=49.08 Aligned_cols=71 Identities=15% Similarity=0.046 Sum_probs=51.3
Q ss_pred ccccccCC-CccHHHHHHHHHhCCCCeEEecCCchH----HHhhhh-------CCCCEEEecCCCHHHHhhcCccccCEE
Q 001051 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDR----VAIGRA-------LDLPVYFGDAGSREVLHKVGAERACAA 1077 (1173)
Q Consensus 1010 ~hvIIiG~-G~~G~~Ia~~L~~~gi~VvVID~D~e~----ve~l~~-------~g~~vi~GDasd~e~Le~agI~~A~~V 1077 (1173)
..++|.|. |-+|..+++.|.++|++|+++|+.... ...... ..+..+.||..+.+.|..+- ++++.|
T Consensus 16 ~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~-~~~d~V 94 (348)
T PRK15181 16 KRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKAC-KNVDYV 94 (348)
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHh-hCCCEE
Confidence 35777775 999999999999999999999986432 111110 13567889999998887653 457776
Q ss_pred EEec
Q 001051 1078 AITL 1081 (1173)
Q Consensus 1078 Vi~t 1081 (1173)
|=+.
T Consensus 95 iHlA 98 (348)
T PRK15181 95 LHQA 98 (348)
T ss_pred EECc
Confidence 6554
No 338
>PRK07831 short chain dehydrogenase; Provisional
Probab=79.33 E-value=2.6 Score=46.64 Aligned_cols=73 Identities=16% Similarity=0.130 Sum_probs=53.0
Q ss_pred ccccccCC-C-ccHHHHHHHHHhCCCCeEEecCCchHHHhhh----h-C---CCCEEEecCCCHHHHhhcC------ccc
Q 001051 1010 DHIILCGF-G-RVGQIIAQLLSERLIPFVALDVRSDRVAIGR----A-L---DLPVYFGDAGSREVLHKVG------AER 1073 (1173)
Q Consensus 1010 ~hvIIiG~-G-~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~----~-~---g~~vi~GDasd~e~Le~ag------I~~ 1073 (1173)
+.++|.|. | .+|..+++.|.++|+.|+++|++++..+... + . .+..+.+|.++++.++++- ...
T Consensus 18 k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 97 (262)
T PRK07831 18 KVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVERLGR 97 (262)
T ss_pred CEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 56888886 5 5999999999999999999999887665432 2 1 2457789999987665431 125
Q ss_pred cCEEEEecC
Q 001051 1074 ACAAAITLD 1082 (1173)
Q Consensus 1074 A~~VVi~t~ 1082 (1173)
.|.+|-..+
T Consensus 98 id~li~~ag 106 (262)
T PRK07831 98 LDVLVNNAG 106 (262)
T ss_pred CCEEEECCC
Confidence 677766654
No 339
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=79.32 E-value=79 Score=35.42 Aligned_cols=88 Identities=14% Similarity=0.018 Sum_probs=54.7
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhhcccCCcchhhHHHHHHHhhccchhhhHHHHHHHHHH
Q 001051 892 KLLLSNFPVITGALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGI 971 (1173)
Q Consensus 892 ~~L~~~~~lilllvvllvv~K~l~v~l~~~l~g~~~real~lGl~LaprGevalvla~lAl~~giis~el~silvlvVvl 971 (1173)
..+..+|..++..+.+..+.-++..+..++.+|.+. .. ...+.||+...-+.+..+-+.|....-...+++++-++
T Consensus 81 ~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~--~i--~~Sl~pkSvTtpiAm~vs~~iGG~~sLta~~vvitGi~ 156 (226)
T TIGR00659 81 PQIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGP--EI--IASLLPKSVTTPIAMHVSEMIGGIPAVTAVFVILTGLL 156 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH--HH--HHHhhhHHhhHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 344445544444444444555567777888888873 22 23578999888887777777776544444444455566
Q ss_pred HHHHHHHHHhhh
Q 001051 972 SMALTPWLAAGG 983 (1173)
Q Consensus 972 S~iItPiL~~~~ 983 (1173)
..+++|.+.++.
T Consensus 157 Ga~~g~~ll~~~ 168 (226)
T TIGR00659 157 GTVFGPMVLRYF 168 (226)
T ss_pred HHHHHHHHHHHc
Confidence 667777776654
No 340
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=79.28 E-value=36 Score=42.64 Aligned_cols=76 Identities=18% Similarity=0.302 Sum_probs=55.8
Q ss_pred cccccccccCCCccHHHHHHHHHhC--CCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCC
Q 001051 1007 DLQDHIILCGFGRVGQIIAQLLSER--LIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1173)
Q Consensus 1007 ~lk~hvIIiG~G~~G~~Ia~~L~~~--gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd 1084 (1173)
+.+..++|+|.|.-|..+++.++.. ..+|-++|.|++... .+=.|++|+-... =++..++.+++ .++++.+.-
T Consensus 114 ~~~~r~lIiGAG~ag~~l~r~~~~~~~~~pV~fiDdd~~~~g-~~i~Gv~V~g~~~-i~~~v~~~~~~---~iiiAips~ 188 (588)
T COG1086 114 DNRIRLLIIGAGSAGDLLLRALRRDPEYTPVAFLDDDPDLTG-MKIRGVPVLGRIE-IERVVEELGIQ---LILIAIPSA 188 (588)
T ss_pred cCCCceEEEcCchHHHHHHHHHHhCCCcceEEEECCChhhcC-CEEeceeeechhH-HHHHHHHcCCc---eEEEecCCC
Confidence 3456799999999999999999864 458899999986542 1224777776666 77777777755 677777775
Q ss_pred cch
Q 001051 1085 GAN 1087 (1173)
Q Consensus 1085 ~~N 1087 (1173)
+.+
T Consensus 189 ~~~ 191 (588)
T COG1086 189 SQE 191 (588)
T ss_pred CHH
Confidence 444
No 341
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=79.28 E-value=8.1 Score=41.06 Aligned_cols=111 Identities=25% Similarity=0.252 Sum_probs=65.3
Q ss_pred cccccCCCccHHHHHHHHHhCCCC-eEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchHH
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIP-FVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYR 1089 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~-VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni~ 1089 (1173)
+++|+|.|-+|..+++.|...|+. ++++|.|.-....+.+. .+. .+..| .. ..-.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq---~~~--------~~~vg------------~~-Ka~~ 56 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQ---QYF--------LSQIG------------EP-KVEA 56 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcc---ccc--------HhhCC------------Ch-HHHH
Confidence 478999999999999999999995 99999986332222111 110 00111 11 2334
Q ss_pred HHHHHHhhCCCceEEEEecChhhHHHHHH--CCCCeeecCC-cHHHH-HHHHHHHHhcCCC
Q 001051 1090 TVWALSKYFPNVKTFVRAHDIDHGLNLEK--AGATAVVPET-LEPSL-QLAAAVLAQAKLP 1146 (1173)
Q Consensus 1090 iv~~ar~l~p~~~IIara~d~e~~~~L~~--aGAd~VI~p~-~~aa~-~LA~~vl~~l~~~ 1146 (1173)
+...+++++|++++.+.....+. +.+.+ .+.|.||.-. ....+ .+.+......++|
T Consensus 57 ~~~~l~~lnp~v~i~~~~~~~~~-~~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip 116 (174)
T cd01487 57 LKENLREINPFVKIEAINIKIDE-NNLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKP 116 (174)
T ss_pred HHHHHHHHCCCCEEEEEEeecCh-hhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCC
Confidence 56778889999888776554433 12221 2788888552 22222 2444444443444
No 342
>PRK10263 DNA translocase FtsK; Provisional
Probab=79.28 E-value=24 Score=48.07 Aligned_cols=150 Identities=15% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhchh-------------------HHHHHHHHHHhhcccchhHHHHHhHhhHHHHHHHHHHHHH
Q 001051 825 SANTLLVILGTSLLTARAGLS-------------------MALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTV 885 (1173)
Q Consensus 825 ~l~vLal~lg~~~lae~lGLS-------------------~vLGAFvAGLiLsn~~~~~~l~e~l~~~~~~LlpiFFv~i 885 (1173)
+..+++++++++++..++..+ |.+|++++++++. +-.+..+++|++|++.
T Consensus 25 ~~gIlLlllAlfL~lALiSYsPsDPSwS~sa~~~~V~Nl~GiVGA~LAD~L~~-----------LFGl~AYLLP~LL~~~ 93 (1355)
T PRK10263 25 ALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFF-----------IFGVMAYTIPVIIVGG 93 (1355)
T ss_pred HHHHHHHHHHHHHHHHHHhCCccCCcccccCcccccccccchHHHHHHHHHHH-----------HHhHHHHHHHHHHHHH
Q ss_pred hcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhhcccCCcchhhHHHHHHHhh-ccchhhhHHH
Q 001051 886 GMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQ-GIMSSQLSSL 964 (1173)
Q Consensus 886 Gm~Idl~~L~~~~~lilllvvllvv~K~l~v~l~~~l~g~~~real~lGl~LaprGevalvla~lAl~~-giis~el~si 964 (1173)
+..+ +..-.....+....+...+++-++.++..+.+..+.....+ .+...|.++..+....... |.++..++.+
T Consensus 94 a~~l-~R~r~~~~~l~~~~l~lRliGlLLLLLas~gLaa~~~~d~~----~~~gGGIIG~lLs~lL~~LfG~vGa~LILL 168 (1355)
T PRK10263 94 CWFA-WRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIW----YFASGGVIGSLLSTTLQPLLHSSGGTIALL 168 (1355)
T ss_pred HHHH-HhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhcccccc----cccccchHHHHHHHHHHHHHhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHhhh
Q 001051 965 LFLLVGISMALTPWLAAGGQLIASRF 990 (1173)
Q Consensus 965 lvlvVvlS~iItPiL~~~~~~La~rl 990 (1173)
+++++.++.++.--+.....++...+
T Consensus 169 lllLIGLiLlTglSwlsIleriG~~v 194 (1355)
T PRK10263 169 CVWAAGLTLFTGWSWVTIAEKLGGWI 194 (1355)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
No 343
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=79.24 E-value=7.2 Score=43.86 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=49.4
Q ss_pred ccccCC-CccHHHHHHHHHhCC--CCeEEecCCc-----hHHHhhh-hCCCCEEEecCCCHHHHhhcCcc--ccCEEEEe
Q 001051 1012 IILCGF-GRVGQIIAQLLSERL--IPFVALDVRS-----DRVAIGR-ALDLPVYFGDAGSREVLHKVGAE--RACAAAIT 1080 (1173)
Q Consensus 1012 vIIiG~-G~~G~~Ia~~L~~~g--i~VvVID~D~-----e~ve~l~-~~g~~vi~GDasd~e~Le~agI~--~A~~VVi~ 1080 (1173)
++|.|. |.+|..+++.|.+.| ++|+++|+.. +..+.+. ..+..++.||.++++.+.++ ++ ++|.||-+
T Consensus 2 ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~~~~~d~vi~~ 80 (317)
T TIGR01181 2 ILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRL-FTEHQPDAVVHF 80 (317)
T ss_pred EEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHH-HhhcCCCEEEEc
Confidence 566664 899999999998877 6888888642 2222221 12567889999999988776 33 37888766
Q ss_pred cC
Q 001051 1081 LD 1082 (1173)
Q Consensus 1081 t~ 1082 (1173)
..
T Consensus 81 a~ 82 (317)
T TIGR01181 81 AA 82 (317)
T ss_pred cc
Confidence 64
No 344
>PLN02858 fructose-bisphosphate aldolase
Probab=79.21 E-value=7.1 Score=53.97 Aligned_cols=109 Identities=16% Similarity=0.080 Sum_probs=73.2
Q ss_pred ccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchHH
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYR 1089 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni~ 1089 (1173)
..+-++|.|.+|..+++.|.+.|+++++.|+++++++.+.+.|... ..++..+ ++++|.|+++++|+..--.
T Consensus 325 ~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~----~~s~~e~----~~~aDvVi~~V~~~~~v~~ 396 (1378)
T PLN02858 325 KRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLA----GNSPAEV----AKDVDVLVIMVANEVQAEN 396 (1378)
T ss_pred CeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCee----cCCHHHH----HhcCCEEEEecCChHHHHH
Confidence 5688899999999999999999999999999999999888776533 2233322 3478999999998754322
Q ss_pred HHH----HHHhhCCCceEEEEecC--hhhH----HHHHH--CCCCeeecC
Q 001051 1090 TVW----ALSKYFPNVKTFVRAHD--IDHG----LNLEK--AGATAVVPE 1127 (1173)
Q Consensus 1090 iv~----~ar~l~p~~~IIara~d--~e~~----~~L~~--aGAd~VI~p 1127 (1173)
+.. .+....++ .+++-..+ ++.. ..+.+ .|+..+--|
T Consensus 397 Vl~g~~g~~~~l~~g-~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAP 445 (1378)
T PLN02858 397 VLFGDLGAVSALPAG-ASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAP 445 (1378)
T ss_pred HHhchhhHHhcCCCC-CEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEcc
Confidence 221 22223343 45544433 4443 44455 677665555
No 345
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=79.19 E-value=6.4 Score=48.80 Aligned_cols=101 Identities=13% Similarity=0.042 Sum_probs=70.6
Q ss_pred cccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCC-------------HHHH------hhc
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGS-------------REVL------HKV 1069 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd-------------~e~L------e~a 1069 (1173)
..+++|+|.|..|...+..+...|..|+++|.++++.+.++..|..++.=|..+ .+.. ..-
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e 243 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAA 243 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999988888776555321 1111 111
Q ss_pred CccccCEEEEec---CCCcchHHHHHHHHhhCCCceEEEEecC
Q 001051 1070 GAERACAAAITL---DTPGANYRTVWALSKYFPNVKTFVRAHD 1109 (1173)
Q Consensus 1070 gI~~A~~VVi~t---~Dd~~Ni~iv~~ar~l~p~~~IIara~d 1109 (1173)
.+.++|.+|.+. +.+..-+..-.+++..-|...|+=.+-|
T Consensus 244 ~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d 286 (511)
T TIGR00561 244 QAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAE 286 (511)
T ss_pred HhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeC
Confidence 256799998888 3333234455566666666545433333
No 346
>PRK10711 hypothetical protein; Provisional
Probab=79.11 E-value=52 Score=36.90 Aligned_cols=88 Identities=8% Similarity=-0.035 Sum_probs=58.2
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhhcccCCcchhhHHHHHHHhhccchhhhHHHHHHHHHH
Q 001051 892 KLLLSNFPVITGALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGI 971 (1173)
Q Consensus 892 ~~L~~~~~lilllvvllvv~K~l~v~l~~~l~g~~~real~lGl~LaprGevalvla~lAl~~giis~el~silvlvVvl 971 (1173)
..+..+|..+++.+.+..+.-++..++.++.+|.+.. +...|.||+...-+.+.++-+.|.+..-....++++-++
T Consensus 82 ~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~----~~~Sl~pkSVTtPIAm~is~~iGG~~sLta~~ViitGi~ 157 (231)
T PRK10711 82 HQIRARWKSIISICFIGSVVAMVTGTAVALWMGATPE----IAASILPKSVTTPIAMAVGGSIGGIPAISAVCVIFVGIL 157 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHhhhhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 3444455544444445555566777788888888742 234578999888888888888776655445555556667
Q ss_pred HHHHHHHHHhhh
Q 001051 972 SMALTPWLAAGG 983 (1173)
Q Consensus 972 S~iItPiL~~~~ 983 (1173)
..+++|.+.++.
T Consensus 158 Ga~~g~~llk~~ 169 (231)
T PRK10711 158 GAVFGHTLLNAM 169 (231)
T ss_pred HHHHHHHHHHHc
Confidence 777888887754
No 347
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=79.11 E-value=1.7 Score=45.77 Aligned_cols=96 Identities=19% Similarity=0.067 Sum_probs=63.9
Q ss_pred cccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEec------------------CCC-HHHHhhc
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGD------------------AGS-REVLHKV 1069 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GD------------------asd-~e~Le~a 1069 (1173)
..+++|+|.|++|...++.+...|.+++++|.++++.+..+..+...+.-+ +.. +..+. -
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~-~ 98 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFA-E 98 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHH-H
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHH-H
Confidence 468999999999999999999999999999999999988887776655554 222 23333 3
Q ss_pred CccccCEEEEecC--C-CcchHHHHHHHHhhCCCceEEEE
Q 001051 1070 GAERACAAAITLD--T-PGANYRTVWALSKYFPNVKTFVR 1106 (1173)
Q Consensus 1070 gI~~A~~VVi~t~--D-d~~Ni~iv~~ar~l~p~~~IIar 1106 (1173)
-+..++.+|.+.- + ....+..-..++.+.|. .+|+-
T Consensus 99 ~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~g-svIvD 137 (168)
T PF01262_consen 99 FIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPG-SVIVD 137 (168)
T ss_dssp HHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTT-EEEEE
T ss_pred HHhhCcEEeeecccCCCCCCEEEEhHHhhccCCC-ceEEE
Confidence 4667888876442 2 22234445566666654 45543
No 348
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=79.11 E-value=1.2e+02 Score=34.22 Aligned_cols=53 Identities=11% Similarity=0.039 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhhcCChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhCCChH
Q 001051 659 FGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGP 712 (1173)
Q Consensus 659 LGL~~LLF~aGLEldl~~Lrr~~k~il~La~~~vllt~~~vgll~~~llGls~~ 712 (1173)
+|-+...|-.-+--+++.+|+++++++.-.+++.++..+ .++....++|.+..
T Consensus 71 LgPAtVALAvPLY~q~~~lk~~~~~Il~~~~vG~~~~i~-s~~~la~~lgl~~~ 123 (232)
T PRK04288 71 LEPATIAFAIPLYKKRDVLKKYWWQILGGIVVGSVCSVL-IIYLVAKLIQLDNA 123 (232)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCcCHH
Confidence 344445555666668889999999888777777766544 34444456676653
No 349
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=79.07 E-value=3.7 Score=55.36 Aligned_cols=113 Identities=17% Similarity=0.224 Sum_probs=73.9
Q ss_pred cccccccCCCcc-----------HHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhc-CccccCE
Q 001051 1009 QDHIILCGFGRV-----------GQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKV-GAERACA 1076 (1173)
Q Consensus 1009 k~hvIIiG~G~~-----------G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~a-gI~~A~~ 1076 (1173)
-+.++|+|.|.. |..+++.|++.|++|+++|.++..+....... ..++-++.+.+.+.+. .-++.|+
T Consensus 7 ~~kvlviG~G~~~igq~~E~d~sg~q~~~aL~e~G~~vi~v~~np~~~~~d~~~a-d~~y~ep~~~e~l~~ii~~e~~D~ 85 (1068)
T PRK12815 7 IQKILVIGSGPIVIGQAAEFDYSGTQACLALKEEGYQVVLVNPNPATIMTDPAPA-DTVYFEPLTVEFVKRIIAREKPDA 85 (1068)
T ss_pred CCEEEEECCCcchhcchhhhhhHHHHHHHHHHHcCCEEEEEeCCcchhhcCcccC-CeeEECCCCHHHHHHHHHHhCcCE
Confidence 356889999986 77899999999999999999997654322222 2345577777777663 5568899
Q ss_pred EEEecCCC-cchHHHHH----HHHhh-----CCCceEEEEecChh-hHHHHHHCCCC
Q 001051 1077 AAITLDTP-GANYRTVW----ALSKY-----FPNVKTFVRAHDID-HGLNLEKAGAT 1122 (1173)
Q Consensus 1077 VVi~t~Dd-~~Ni~iv~----~ar~l-----~p~~~IIara~d~e-~~~~L~~aGAd 1122 (1173)
++.+++.+ ..|....+ .+.++ +++...+..+.|.. ..+.|++.|+.
T Consensus 86 Iip~~gg~~~l~~a~~l~~~g~Le~~gv~l~g~~~~~i~~~~DK~~~k~~l~~~GIp 142 (1068)
T PRK12815 86 LLATLGGQTALNLAVKLHEDGILEQYGVELLGTNIEAIQKGEDRERFRALMKELGEP 142 (1068)
T ss_pred EEECCCCchHHHHHHHHHhcCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHcCcC
Confidence 88776543 33333211 12222 24444555666664 44677888876
No 350
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=78.97 E-value=9.6 Score=42.94 Aligned_cols=98 Identities=13% Similarity=0.035 Sum_probs=62.1
Q ss_pred cHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCC---H-HHHh-hcCccccCEEEEecCCCcchHHHHHHH
Q 001051 1020 VGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGS---R-EVLH-KVGAERACAAAITLDTPGANYRTVWAL 1094 (1173)
Q Consensus 1020 ~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd---~-e~Le-~agI~~A~~VVi~t~Dd~~Ni~iv~~a 1094 (1173)
+|..++-.|.+.|++|++++++ ++.+.+++.|+.+...+... + .+.. -.....+|.+++++......-.+....
T Consensus 2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vKs~~~~~~l~~l~ 80 (293)
T TIGR00745 2 VGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEELPPADLVIITVKAYQTEEAAALLL 80 (293)
T ss_pred chHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhhcCCCCEEEEeccchhHHHHHHHhH
Confidence 5778899999999999999997 77888888887554321110 0 1111 012457899999998764333333333
Q ss_pred HhhCCCceEEEEecChhhHHHHHH
Q 001051 1095 SKYFPNVKTFVRAHDIDHGLNLEK 1118 (1173)
Q Consensus 1095 r~l~p~~~IIara~d~e~~~~L~~ 1118 (1173)
....++..|+...+.-.+.+.+.+
T Consensus 81 ~~l~~~~~iv~~qNG~g~~~~l~~ 104 (293)
T TIGR00745 81 PLIGKNTKVLFLQNGLGHEERLRE 104 (293)
T ss_pred hhcCCCCEEEEccCCCCCHHHHHH
Confidence 344566667776666666666654
No 351
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.91 E-value=2.5 Score=45.99 Aligned_cols=73 Identities=14% Similarity=0.215 Sum_probs=53.1
Q ss_pred ccccccCC-CccHHHHHHHHHhCCCCeEEecCCchHHHhh----hhCC--CCEEEecCCCHHHHhhc------CccccCE
Q 001051 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIG----RALD--LPVYFGDAGSREVLHKV------GAERACA 1076 (1173)
Q Consensus 1010 ~hvIIiG~-G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l----~~~g--~~vi~GDasd~e~Le~a------gI~~A~~ 1076 (1173)
+.++|.|. |.+|..+++.|.++|..|++++++++..+.. +..+ ...+..|.++++.++++ .....|.
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 85 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQLNG 85 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 46778886 9999999999999999999999998765433 2223 35678999998776432 1134677
Q ss_pred EEEecC
Q 001051 1077 AAITLD 1082 (1173)
Q Consensus 1077 VVi~t~ 1082 (1173)
+|-..+
T Consensus 86 vi~~ag 91 (253)
T PRK08217 86 LINNAG 91 (253)
T ss_pred EEECCC
Confidence 776553
No 352
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=78.88 E-value=2.6 Score=50.90 Aligned_cols=73 Identities=14% Similarity=0.199 Sum_probs=54.1
Q ss_pred ccccccCCCccHHHHHHHHHhCCC-CeEEecCCchHHHhhh-hCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcch
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLI-PFVALDVRSDRVAIGR-ALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi-~VvVID~D~e~ve~l~-~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~N 1087 (1173)
..++|+|.|.+|..+++.|...|. +++++++++++.+.+. ..|..++ +.+.+.+ .+.++|.||.+|+.+..-
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~-----~~~~~~~-~l~~aDvVI~aT~s~~~~ 256 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAI-----PLDELPE-ALAEADIVISSTGAPHPI 256 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEe-----eHHHHHH-HhccCCEEEECCCCCCcE
Confidence 578999999999999999999997 7999999999877553 3343222 2233332 245799999999887654
Q ss_pred H
Q 001051 1088 Y 1088 (1173)
Q Consensus 1088 i 1088 (1173)
+
T Consensus 257 i 257 (423)
T PRK00045 257 I 257 (423)
T ss_pred E
Confidence 3
No 353
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=78.88 E-value=2.9 Score=49.42 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=33.0
Q ss_pred cccccccccCCCccHHHHHHHHHhCCCCeEEecCCch
Q 001051 1007 DLQDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSD 1043 (1173)
Q Consensus 1007 ~lk~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e 1043 (1173)
+....+||+|.|-.|..++..|.+.|.+|.|||+|-.
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~ 79 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLS 79 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccc
Confidence 3445699999999999999999999999999999943
No 354
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=78.88 E-value=13 Score=42.17 Aligned_cols=115 Identities=12% Similarity=0.044 Sum_probs=69.6
Q ss_pred cccccCCCccHHHHHHHHHhCC--CC-eEEecCCchHHHhhhhC-CCCEEEecCCCHHHHhhcCccccCEEEEecCCCcc
Q 001051 1011 HIILCGFGRVGQIIAQLLSERL--IP-FVALDVRSDRVAIGRAL-DLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~g--i~-VvVID~D~e~ve~l~~~-g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~ 1086 (1173)
++.|+|+|.+|..+++.|.+.+ .+ +.++|+++++.+.+.+. +..++ .+.+.+- .++|.|+.+++.+..
T Consensus 3 rIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~----~~~~ell----~~~DvVvi~a~~~~~ 74 (265)
T PRK13304 3 KIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKAC----LSIDELV----EDVDLVVECASVNAV 74 (265)
T ss_pred EEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeE----CCHHHHh----cCCCEEEEcCChHHH
Confidence 4789999999999999998753 44 55789999888776442 33222 2222221 579999999876533
Q ss_pred hHHHHHHHHhhCCCceEEEEec----ChhhHHHH----HHCCCCeeecCCcHHHHHHH
Q 001051 1087 NYRTVWALSKYFPNVKTFVRAH----DIDHGLNL----EKAGATAVVPETLEPSLQLA 1136 (1173)
Q Consensus 1087 Ni~iv~~ar~l~p~~~IIara~----d~e~~~~L----~~aGAd~VI~p~~~aa~~LA 1136 (1173)
...+..+.+.+.+ +++... |.+..+.| ++.|....+++....+....
T Consensus 75 -~~~~~~al~~Gk~--Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~sga~~g~d~i 129 (265)
T PRK13304 75 -EEVVPKSLENGKD--VIIMSVGALADKELFLKLYKLAKENNCKIYLPSGAIVGLDGI 129 (265)
T ss_pred -HHHHHHHHHcCCC--EEEEchHHhcCHHHHHHHHHHHHHcCCEEEEeCchHHhHHHH
Confidence 3444444445444 444333 44444444 45577666655445444443
No 355
>PRK07814 short chain dehydrogenase; Provisional
Probab=78.87 E-value=2.5 Score=46.89 Aligned_cols=72 Identities=13% Similarity=0.044 Sum_probs=52.4
Q ss_pred ccccccCC-CccHHHHHHHHHhCCCCeEEecCCchHHHhhhh----C--CCCEEEecCCCHHHHhhcC------ccccCE
Q 001051 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA----L--DLPVYFGDAGSREVLHKVG------AERACA 1076 (1173)
Q Consensus 1010 ~hvIIiG~-G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~----~--g~~vi~GDasd~e~Le~ag------I~~A~~ 1076 (1173)
+.++|.|. |.+|..+++.|.++|++|++++++++..+.+.+ . ++.++.+|.++++.++++- ..+.+.
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 90 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFGRLDI 90 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 34666665 469999999999999999999999876654422 2 3556789999999886531 135677
Q ss_pred EEEec
Q 001051 1077 AAITL 1081 (1173)
Q Consensus 1077 VVi~t 1081 (1173)
+|-..
T Consensus 91 vi~~A 95 (263)
T PRK07814 91 VVNNV 95 (263)
T ss_pred EEECC
Confidence 76543
No 356
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=78.79 E-value=2.5 Score=46.45 Aligned_cols=73 Identities=11% Similarity=-0.001 Sum_probs=53.0
Q ss_pred ccccccCC-CccHHHHHHHHHhCCCCeEEecCCchHHHhh----hhCC--CCEEEecCCCHHHHhhcC------ccccCE
Q 001051 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIG----RALD--LPVYFGDAGSREVLHKVG------AERACA 1076 (1173)
Q Consensus 1010 ~hvIIiG~-G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l----~~~g--~~vi~GDasd~e~Le~ag------I~~A~~ 1076 (1173)
+.++|.|. |.+|..+++.|.++|++|++++++++..++. +..+ ...+.+|.++++.++++- ....+.
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~ 87 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGSVDI 87 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 45777775 8899999999999999999999998655433 3334 345789999999886541 123677
Q ss_pred EEEecC
Q 001051 1077 AAITLD 1082 (1173)
Q Consensus 1077 VVi~t~ 1082 (1173)
+|-...
T Consensus 88 vi~~ag 93 (262)
T PRK13394 88 LVSNAG 93 (262)
T ss_pred EEECCc
Confidence 666543
No 357
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=78.70 E-value=4.8 Score=46.19 Aligned_cols=112 Identities=12% Similarity=0.012 Sum_probs=68.6
Q ss_pred ccccccCCCccHHHHHHHHHhCCCC-eEEecCCc---hHHHhhh----hCC--CCEEEecCCCHHHHhhcCccccCEEEE
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLIP-FVALDVRS---DRVAIGR----ALD--LPVYFGDAGSREVLHKVGAERACAAAI 1079 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi~-VvVID~D~---e~ve~l~----~~g--~~vi~GDasd~e~Le~agI~~A~~VVi 1079 (1173)
++++|+|.|-.|+.++..|.+.|.. ++++++++ ++.+.+. +.+ ..+...|..+.+.+.. .+..+|.+|-
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~-~~~~~DilIN 205 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKA-EIASSDILVN 205 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHh-hhccCCEEEE
Confidence 5789999999999999999999997 99999986 5554432 222 2344567777666544 3456799998
Q ss_pred ecCCCc---chHHHHHHHHhhCCCceEEEEecChhhHHHH---HHCCCC
Q 001051 1080 TLDTPG---ANYRTVWALSKYFPNVKTFVRAHDIDHGLNL---EKAGAT 1122 (1173)
Q Consensus 1080 ~t~Dd~---~Ni~iv~~ar~l~p~~~IIara~d~e~~~~L---~~aGAd 1122 (1173)
+|+-.. .+.........+.++..++=.++++.....| ++.|..
T Consensus 206 aTp~Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~P~~T~ll~~A~~~G~~ 254 (289)
T PRK12548 206 ATLVGMKPNDGETNIKDTSVFRKDLVVADTVYNPKKTKLLEDAEAAGCK 254 (289)
T ss_pred eCCCCCCCCCCCCCCCcHHhcCCCCEEEEecCCCCCCHHHHHHHHCCCe
Confidence 885221 1100000011233443445456666545454 455764
No 358
>PRK08223 hypothetical protein; Validated
Probab=78.60 E-value=6.7 Score=45.17 Aligned_cols=113 Identities=17% Similarity=0.104 Sum_probs=72.0
Q ss_pred cccccccCCCccHHHHHHHHHhCCC-CeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCc--
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLI-PFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPG-- 1085 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi-~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~-- 1085 (1173)
+.+|+|+|.|-+|..++..|...|+ .++++|.|.-....+..+ ++ ...+|..
T Consensus 27 ~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ---~l----------------------~~~~diG~~ 81 (287)
T PRK08223 27 NSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQ---AG----------------------AMMSTLGRP 81 (287)
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccc---cC----------------------cChhHCCCc
Confidence 4579999999999999999999997 789998875443333111 11 1111111
Q ss_pred chHHHHHHHHhhCCCceEEEEecC--hhhHHHHHHCCCCeeecCCcH---HHHHHHHHHHHhcCCCH
Q 001051 1086 ANYRTVWALSKYFPNVKTFVRAHD--IDHGLNLEKAGATAVVPETLE---PSLQLAAAVLAQAKLPA 1147 (1173)
Q Consensus 1086 ~Ni~iv~~ar~l~p~~~IIara~d--~e~~~~L~~aGAd~VI~p~~~---aa~~LA~~vl~~l~~~~ 1147 (1173)
..-.+...++++||+++|.+.... +++...+- .+.|.||.-... ....+.+..-...++|.
T Consensus 82 Kve~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll-~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~ 147 (287)
T PRK08223 82 KAEVLAEMVRDINPELEIRAFPEGIGKENADAFL-DGVDVYVDGLDFFEFDARRLVFAACQQRGIPA 147 (287)
T ss_pred HHHHHHHHHHHHCCCCEEEEEecccCccCHHHHH-hCCCEEEECCCCCcHHHHHHHHHHHHHcCCCE
Confidence 223456788999999888776543 33333332 378988855432 45666666666666553
No 359
>PRK06196 oxidoreductase; Provisional
Probab=78.59 E-value=2.8 Score=48.08 Aligned_cols=72 Identities=15% Similarity=0.065 Sum_probs=54.7
Q ss_pred ccccccCC-CccHHHHHHHHHhCCCCeEEecCCchHHHhhhh--CCCCEEEecCCCHHHHhhcC------ccccCEEEEe
Q 001051 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA--LDLPVYFGDAGSREVLHKVG------AERACAAAIT 1080 (1173)
Q Consensus 1010 ~hvIIiG~-G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~--~g~~vi~GDasd~e~Le~ag------I~~A~~VVi~ 1080 (1173)
+.++|.|. |.+|..+++.|.++|++|++++++++..+...+ .++.++.+|.+|.+.++++- ..+.|.+|-.
T Consensus 27 k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~li~n 106 (315)
T PRK06196 27 KTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLDSGRRIDILINN 106 (315)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHhcCCCCCEEEEC
Confidence 45677775 779999999999999999999999887655432 24778899999998775531 2356777765
Q ss_pred c
Q 001051 1081 L 1081 (1173)
Q Consensus 1081 t 1081 (1173)
.
T Consensus 107 A 107 (315)
T PRK06196 107 A 107 (315)
T ss_pred C
Confidence 4
No 360
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=78.54 E-value=1.4e+02 Score=34.85 Aligned_cols=123 Identities=20% Similarity=0.259 Sum_probs=73.5
Q ss_pred HHHHHHhhcccchhHHHHHhHhhHHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCChhh
Q 001051 850 AFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRLFGVSVIS 929 (1173)
Q Consensus 850 AFvAGLiLsn~~~~~~l~e~l~~~~~~LlpiFFv~iGm~Idl~~L~~~~~lilllvvllvv~K~l~v~l~~~l~g~~~re 929 (1173)
.-+.|+++.-+|+.+- . -...+..+++-.||+.+|..-|+..+.. .|..++..+...+...+..+..+++++.+..+
T Consensus 253 vsi~gLi~aLtPf~~l-p-gs~elgtv~lY~~v~vias~Ad~~~i~t-aP~~i~~gf~il~~h~~v~f~~~KlF~~dL~~ 329 (384)
T COG5505 253 VSITGLIIALTPFERL-P-GSQELGTVLLYLFVVVIASPADLRLIVT-APLIILFGFIILISHLAVSFAAGKLFRVDLEE 329 (384)
T ss_pred HHHHHHHHHhCccccC-C-chhhhhHHHHHHHHHHhccchhHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3455666655553210 0 0112345777788999999999988765 45444444555566777788888999888766
Q ss_pred hhhhhhcccCCcchhhHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHh
Q 001051 930 AIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGISMALTPWLAA 981 (1173)
Q Consensus 930 al~lGl~LaprGevalvla~lAl~~giis~el~silvlvVvlS~iItPiL~~ 981 (1173)
-....+. +..|-.+.-+...+.+ .++....+++.++.-+++-++-.
T Consensus 330 i~~AslA-niGG~~sAp~~A~A~n-----r~lv~~gvlmg~lG~~iGn~fG~ 375 (384)
T COG5505 330 ILLASLA-NIGGPTSAPAMAIAKN-----RELVAPGVLMGTLGYLIGNYFGT 375 (384)
T ss_pred HHHHHHh-ccCCccchhHHHhhcC-----chhcchHHHHHHHHHHHHhHHHH
Confidence 5554443 5566665555555544 34444555555555555555443
No 361
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=78.49 E-value=1.4e+02 Score=37.84 Aligned_cols=158 Identities=20% Similarity=0.219 Sum_probs=90.2
Q ss_pred hHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcc
Q 001051 190 DEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATM----ALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKE 265 (1173)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (1173)
|++...-..++.-+|.+.+++..|..|+.-|.+... .+.-++...+....-++-.++.+.-.+.
T Consensus 278 ~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~------------ 345 (569)
T PRK04778 278 DEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNES------------ 345 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCch------------
Confidence 456666677888899999999999999988876544 3445555555555555555443332222
Q ss_pred hhhHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 001051 266 EDGLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEATQ 345 (1173)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~a~~~~~~~m~~ae~av~~e~e~~~ 345 (1173)
|-+.....++++++++..+..++..+..-+..-.++|++.+.+.+.-+..+..-.+-.+.+. ..-..|.+|-+
T Consensus 346 e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~-------~Lrk~E~eAr~ 418 (569)
T PRK04778 346 ELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQ-------GLRKDELEARE 418 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 23345555556666666555555555554444555555555554444333333222222222 33345666766
Q ss_pred hcccHHHHHHHHHHhhcCCCC
Q 001051 346 RVNDAEIALQRAEKSLSNSSV 366 (1173)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~ 366 (1173)
.+......|.....-+..++.
T Consensus 419 kL~~~~~~L~~ikr~l~k~~l 439 (569)
T PRK04778 419 KLERYRNKLHEIKRYLEKSNL 439 (569)
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 666666666665555555543
No 362
>PRK08643 acetoin reductase; Validated
Probab=78.46 E-value=2.6 Score=46.34 Aligned_cols=71 Identities=13% Similarity=0.049 Sum_probs=51.7
Q ss_pred cccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhh----h--CCCCEEEecCCCHHHHhhcC------ccccCEE
Q 001051 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGR----A--LDLPVYFGDAGSREVLHKVG------AERACAA 1077 (1173)
Q Consensus 1011 hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~----~--~g~~vi~GDasd~e~Le~ag------I~~A~~V 1077 (1173)
.++|.| .+.+|..+++.|.++|+.|++++++++..+.+. + ....++.+|.++++.++++= ..+.|.+
T Consensus 4 ~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~v 83 (256)
T PRK08643 4 VALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDLNVV 83 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 455655 667999999999999999999999987665442 2 23456789999998765431 2356777
Q ss_pred EEec
Q 001051 1078 AITL 1081 (1173)
Q Consensus 1078 Vi~t 1081 (1173)
|-..
T Consensus 84 i~~a 87 (256)
T PRK08643 84 VNNA 87 (256)
T ss_pred EECC
Confidence 7655
No 363
>PTZ00117 malate dehydrogenase; Provisional
Probab=78.43 E-value=24 Score=41.12 Aligned_cols=132 Identities=14% Similarity=0.154 Sum_probs=76.3
Q ss_pred ccccccCCCccHHHHHHHHHhCC-CCeEEecCCchHHHh--h--hh----CCCC-EEEecCCCHHHHhhcCccccCEEEE
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERL-IPFVALDVRSDRVAI--G--RA----LDLP-VYFGDAGSREVLHKVGAERACAAAI 1079 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~g-i~VvVID~D~e~ve~--l--~~----~g~~-vi~GDasd~e~Le~agI~~A~~VVi 1079 (1173)
.++.|+|.|.+|..++..+...| .+++++|.|++..+. + .. .+.. .+.+ ..+ ++ .+.+||.||+
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~-~~d---~~--~l~~ADiVVi 79 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILG-TNN---YE--DIKDSDVVVI 79 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEe-CCC---HH--HhCCCCEEEE
Confidence 47899999999999999998888 589999999876431 1 11 1111 1121 122 22 3467899999
Q ss_pred ecCCCc-----------ch----HHHHHHHHhhCCCceEEEEecChh--hHHHHHHC-C--CCeeecCC-cHHHHHHHHH
Q 001051 1080 TLDTPG-----------AN----YRTVWALSKYFPNVKTFVRAHDID--HGLNLEKA-G--ATAVVPET-LEPSLQLAAA 1138 (1173)
Q Consensus 1080 ~t~Dd~-----------~N----i~iv~~ar~l~p~~~IIara~d~e--~~~~L~~a-G--Ad~VI~p~-~~aa~~LA~~ 1138 (1173)
+.+-+. .| ..++..+.+..|+..++. +.++. ....+.+. | ..+|+--. ..-..++.+.
T Consensus 80 tag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~viv-vsNP~di~t~~~~~~s~~p~~rviG~gt~lds~R~~~~ 158 (319)
T PTZ00117 80 TAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVIC-VTNPLDCMVKVFQEKSGIPSNKICGMAGVLDSSRFRCN 158 (319)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEE-ecChHHHHHHHHHHhhCCCcccEEEecchHHHHHHHHH
Confidence 884432 12 235557777788754443 34443 33344443 3 35666333 3333445555
Q ss_pred HHHhcCCCHH
Q 001051 1139 VLAQAKLPAS 1148 (1173)
Q Consensus 1139 vl~~l~~~~~ 1148 (1173)
+...++++..
T Consensus 159 la~~l~v~~~ 168 (319)
T PTZ00117 159 LAEKLGVSPG 168 (319)
T ss_pred HHHHhCCCcc
Confidence 5555555443
No 364
>PRK06138 short chain dehydrogenase; Provisional
Probab=78.38 E-value=2.5 Score=46.12 Aligned_cols=73 Identities=19% Similarity=0.121 Sum_probs=53.9
Q ss_pred ccccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhh-----CCCCEEEecCCCHHHHhhc------CccccCEE
Q 001051 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-----LDLPVYFGDAGSREVLHKV------GAERACAA 1077 (1173)
Q Consensus 1010 ~hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~-----~g~~vi~GDasd~e~Le~a------gI~~A~~V 1077 (1173)
+.++|.| .|.+|..+++.|.++|++|++++++.+..+...+ ....++.+|.+|++.++++ .....|.+
T Consensus 6 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~v 85 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGRLDVL 85 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 3566665 5789999999999999999999999876654332 1356788999999887654 11356777
Q ss_pred EEecC
Q 001051 1078 AITLD 1082 (1173)
Q Consensus 1078 Vi~t~ 1082 (1173)
|-...
T Consensus 86 i~~ag 90 (252)
T PRK06138 86 VNNAG 90 (252)
T ss_pred EECCC
Confidence 76554
No 365
>PRK09186 flagellin modification protein A; Provisional
Probab=78.32 E-value=3.1 Score=45.51 Aligned_cols=72 Identities=17% Similarity=0.140 Sum_probs=51.9
Q ss_pred ccccccCC-CccHHHHHHHHHhCCCCeEEecCCchHHHhhh----h----CCCCEEEecCCCHHHHhhcCc------ccc
Q 001051 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGR----A----LDLPVYFGDAGSREVLHKVGA------ERA 1074 (1173)
Q Consensus 1010 ~hvIIiG~-G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~----~----~g~~vi~GDasd~e~Le~agI------~~A 1074 (1173)
+.++|.|. +.+|+.+++.|.++|++|++++++++..+... . ....++.+|.+|++.+.++-- ...
T Consensus 5 k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~i 84 (256)
T PRK09186 5 KTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKYGKI 84 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHcCCc
Confidence 45677774 78999999999999999999999887764331 1 123456899999988765411 235
Q ss_pred CEEEEec
Q 001051 1075 CAAAITL 1081 (1173)
Q Consensus 1075 ~~VVi~t 1081 (1173)
|.+|-..
T Consensus 85 d~vi~~A 91 (256)
T PRK09186 85 DGAVNCA 91 (256)
T ss_pred cEEEECC
Confidence 7777554
No 366
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=78.25 E-value=1.8 Score=46.28 Aligned_cols=104 Identities=15% Similarity=0.069 Sum_probs=56.1
Q ss_pred cccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhC-----CCCEEEecCCCH------------HHHhhcCccc
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL-----DLPVYFGDAGSR------------EVLHKVGAER 1073 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~-----g~~vi~GDasd~------------e~Le~agI~~ 1073 (1173)
++.|+|.|..|..++..+...|++|+++|.|++..+..++. ...+-.|..+.. ..++.+- +
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~--~ 78 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV--D 78 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC--T
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh--h
Confidence 36789999999999999999999999999999987554321 000011111111 1133333 7
Q ss_pred cCEEEEecCCCcchH-HHHHHHHhhCCCceEEEEecChhhHHHH
Q 001051 1074 ACAAAITLDTPGANY-RTVWALSKYFPNVKTFVRAHDIDHGLNL 1116 (1173)
Q Consensus 1074 A~~VVi~t~Dd~~Ni-~iv~~ar~l~p~~~IIara~d~e~~~~L 1116 (1173)
+|.||=+++.+..-- .+-..+.+..|.--|++...+.-....+
T Consensus 79 adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~l 122 (180)
T PF02737_consen 79 ADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISEL 122 (180)
T ss_dssp ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHH
T ss_pred hheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHH
Confidence 899988887763222 2333344444332455555444333433
No 367
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=78.22 E-value=16 Score=40.89 Aligned_cols=112 Identities=19% Similarity=0.166 Sum_probs=67.8
Q ss_pred cccccccCCCccHHHHHHHHHhCCC-CeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCc--
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLI-PFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPG-- 1085 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi-~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~-- 1085 (1173)
..+++|+|.|-+|..++..|...|. +++++|.|.-....+. .++++ ...|-.
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~---RQ~l~----------------------~~~diG~~ 78 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQ---RQVLH----------------------SDANIGQP 78 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcc---cceee----------------------eHhhCCCc
Confidence 3579999999999999999999996 7888888754433221 11111 111111
Q ss_pred chHHHHHHHHhhCCCceEEEEecChhhHHHHHH--CCCCeeecCC-cHHHHHHHHHHHHhcCCC
Q 001051 1086 ANYRTVWALSKYFPNVKTFVRAHDIDHGLNLEK--AGATAVVPET-LEPSLQLAAAVLAQAKLP 1146 (1173)
Q Consensus 1086 ~Ni~iv~~ar~l~p~~~IIara~d~e~~~~L~~--aGAd~VI~p~-~~aa~~LA~~vl~~l~~~ 1146 (1173)
....+...++++||++++.+.....+.. .+.+ .+.|.||.-. ....+.+.+......++|
T Consensus 79 Ka~~a~~~l~~inp~v~i~~~~~~i~~~-~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip 141 (240)
T TIGR02355 79 KVESAKDALTQINPHIAINPINAKLDDA-ELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVP 141 (240)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeccCCHH-HHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCC
Confidence 2334567888899998877665443221 1211 3678888432 233444455555555554
No 368
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=78.21 E-value=3 Score=46.21 Aligned_cols=72 Identities=13% Similarity=0.088 Sum_probs=53.7
Q ss_pred ccccccCC-CccHHHHHHHHHhCCCCeEEecCCchHHHhhhhC---CCCEEEecCCCHHHHhhc------CccccCEEEE
Q 001051 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL---DLPVYFGDAGSREVLHKV------GAERACAAAI 1079 (1173)
Q Consensus 1010 ~hvIIiG~-G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~---g~~vi~GDasd~e~Le~a------gI~~A~~VVi 1079 (1173)
+.++|.|. +.+|..+++.|.++|++|++++++++..+.+.+. ...++.+|.++++.++++ .....|.+|-
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li~ 86 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAFGKLDCFVG 86 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 45677775 6799999999999999999999998887766432 356788999999877653 1124666664
Q ss_pred ec
Q 001051 1080 TL 1081 (1173)
Q Consensus 1080 ~t 1081 (1173)
..
T Consensus 87 ~a 88 (263)
T PRK06200 87 NA 88 (263)
T ss_pred CC
Confidence 43
No 369
>PRK05086 malate dehydrogenase; Provisional
Probab=78.21 E-value=15 Score=42.80 Aligned_cols=131 Identities=15% Similarity=0.042 Sum_probs=76.1
Q ss_pred cccccCC-CccHHHHHHHHHh---CCCCeEEecCCchHH---HhhhhCC-CCEEEe-cCCCHHHHhhcCccccCEEEEec
Q 001051 1011 HIILCGF-GRVGQIIAQLLSE---RLIPFVALDVRSDRV---AIGRALD-LPVYFG-DAGSREVLHKVGAERACAAAITL 1081 (1173)
Q Consensus 1011 hvIIiG~-G~~G~~Ia~~L~~---~gi~VvVID~D~e~v---e~l~~~g-~~vi~G-Dasd~e~Le~agI~~A~~VVi~t 1081 (1173)
++.|+|. |.+|..++..|.. .+..++++|+++..- -.+.+.+ ...+.| +..+. .+ .+.++|.||++.
T Consensus 2 KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~--~~--~l~~~DiVIita 77 (312)
T PRK05086 2 KVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDP--TP--ALEGADVVLISA 77 (312)
T ss_pred EEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCH--HH--HcCCCCEEEEcC
Confidence 4678998 9999999988844 345789999875431 1222212 234555 22221 12 235799999998
Q ss_pred CCCc-----------chH----HHHHHHHhhCCCceEEEEecChhhH--HH----H-HH--CCCCeeecCCcHHHHHHHH
Q 001051 1082 DTPG-----------ANY----RTVWALSKYFPNVKTFVRAHDIDHG--LN----L-EK--AGATAVVPETLEPSLQLAA 1137 (1173)
Q Consensus 1082 ~Dd~-----------~Ni----~iv~~ar~l~p~~~IIara~d~e~~--~~----L-~~--aGAd~VI~p~~~aa~~LA~ 1137 (1173)
+.+. .|. .++..+++.+|+ .+++.+.+|.+. .. + +. ....+|+--...-..++-+
T Consensus 78 G~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~-~ivivvsNP~D~~t~~~~~~~~~~sg~p~~rvig~~~Lds~R~~~ 156 (312)
T PRK05086 78 GVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPK-ACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSET 156 (312)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEccCchHHHHHHHHHHHHHhcCCCHHHEEeeecHHHHHHHH
Confidence 7642 232 345577777887 566677776521 11 1 22 2334566555455456666
Q ss_pred HHHHhcCCC
Q 001051 1138 AVLAQAKLP 1146 (1173)
Q Consensus 1138 ~vl~~l~~~ 1146 (1173)
.+-..++++
T Consensus 157 ~ia~~l~~~ 165 (312)
T PRK05086 157 FVAELKGKQ 165 (312)
T ss_pred HHHHHhCCC
Confidence 665555554
No 370
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=78.05 E-value=1.8 Score=50.91 Aligned_cols=65 Identities=23% Similarity=0.284 Sum_probs=45.6
Q ss_pred ccccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCcc
Q 001051 1008 LQDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAE 1072 (1173)
Q Consensus 1008 lk~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~ 1072 (1173)
++-+++|+|.|..|..+|-.|.+.|++|+++|+++.........+...+.=.+...+.|+++|+.
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~ 68 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVW 68 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCch
Confidence 34579999999999999999999999999999987643211111122333344555677777764
No 371
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=78.03 E-value=1.8 Score=42.69 Aligned_cols=38 Identities=24% Similarity=0.332 Sum_probs=33.6
Q ss_pred ccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHh
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAI 1047 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~ 1047 (1173)
+.++|+|.|.++..+.+.+++.|+++++|..+++....
T Consensus 3 kkvLIanrGeia~r~~ra~r~~Gi~tv~v~s~~d~~s~ 40 (110)
T PF00289_consen 3 KKVLIANRGEIAVRIIRALRELGIETVAVNSNPDTVST 40 (110)
T ss_dssp SEEEESS-HHHHHHHHHHHHHTTSEEEEEEEGGGTTGH
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCcceeccCchhcccc
Confidence 56899999999999999999999999999999987543
No 372
>PLN00198 anthocyanidin reductase; Provisional
Probab=78.00 E-value=2.6 Score=48.70 Aligned_cols=71 Identities=13% Similarity=0.096 Sum_probs=51.0
Q ss_pred ccccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHh------hhhC-CCCEEEecCCCHHHHhhcCccccCEEEEec
Q 001051 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAI------GRAL-DLPVYFGDAGSREVLHKVGAERACAAAITL 1081 (1173)
Q Consensus 1010 ~hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~------l~~~-g~~vi~GDasd~e~Le~agI~~A~~VVi~t 1081 (1173)
+.++|.| .|-+|..+++.|.+.|++|+++.+|++.... +... .+.++.||.++++.+.++ +.++|.|+-+.
T Consensus 10 ~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~vih~A 88 (338)
T PLN00198 10 KTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAP-IAGCDLVFHVA 88 (338)
T ss_pred CeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHH-HhcCCEEEEeC
Confidence 3467776 7889999999999999999877776543321 1111 367889999999887764 23578777544
No 373
>PRK07890 short chain dehydrogenase; Provisional
Probab=77.94 E-value=3 Score=45.75 Aligned_cols=73 Identities=12% Similarity=-0.004 Sum_probs=53.6
Q ss_pred ccccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhh------CCCCEEEecCCCHHHHhhc------CccccCE
Q 001051 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA------LDLPVYFGDAGSREVLHKV------GAERACA 1076 (1173)
Q Consensus 1010 ~hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~------~g~~vi~GDasd~e~Le~a------gI~~A~~ 1076 (1173)
+.++|.| .+.+|+.+++.|.++|+.|++++++++..+.+.+ .....+..|.++++.++++ ...+.|.
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~d~ 85 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFGRVDA 85 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcCCccE
Confidence 3466666 5789999999999999999999999876654422 1356789999999877542 1235677
Q ss_pred EEEecC
Q 001051 1077 AAITLD 1082 (1173)
Q Consensus 1077 VVi~t~ 1082 (1173)
+|-...
T Consensus 86 vi~~ag 91 (258)
T PRK07890 86 LVNNAF 91 (258)
T ss_pred EEECCc
Confidence 776553
No 374
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=77.83 E-value=6.9 Score=46.04 Aligned_cols=72 Identities=15% Similarity=0.219 Sum_probs=60.3
Q ss_pred cccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecC
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLD 1082 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~ 1082 (1173)
-..+.|.|.|-.|....+.....|.+|+++|+++++.+.+++.|...+.-.. +++..+.+.-. +|.++.+.+
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~-~~~~~~~~~~~-~d~ii~tv~ 238 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSS-DSDALEAVKEI-ADAIIDTVG 238 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcC-CchhhHHhHhh-CcEEEECCC
Confidence 4578899999999999999999999999999999999999999877665444 77666665533 999999988
No 375
>PRK06223 malate dehydrogenase; Reviewed
Probab=77.83 E-value=6.5 Score=45.21 Aligned_cols=132 Identities=17% Similarity=0.205 Sum_probs=75.5
Q ss_pred cccccCCCccHHHHHHHHHhCCC-CeEEecCCchHHHhhh----hC----CCC-EEEecCCCHHHHhhcCccccCEEEEe
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLI-PFVALDVRSDRVAIGR----AL----DLP-VYFGDAGSREVLHKVGAERACAAAIT 1080 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi-~VvVID~D~e~ve~l~----~~----g~~-vi~GDasd~e~Le~agI~~A~~VVi~ 1080 (1173)
++.|+|.|.+|..++..+...|. +++++|.+++..+... +. +.. .+.+. ++ ++ .+.+||.||++
T Consensus 4 KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~-~d---~~--~~~~aDiVii~ 77 (307)
T PRK06223 4 KISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGT-ND---YE--DIAGSDVVVIT 77 (307)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeC-CC---HH--HHCCCCEEEEC
Confidence 68899999999999999998775 9999999987653211 11 111 11111 11 22 25789999988
Q ss_pred cCCCc-----------chHH----HHHHHHhhCCCceEEEEecChh--hHHHHHH-CCC--CeeecC-CcHHHHHHHHHH
Q 001051 1081 LDTPG-----------ANYR----TVWALSKYFPNVKTFVRAHDID--HGLNLEK-AGA--TAVVPE-TLEPSLQLAAAV 1139 (1173)
Q Consensus 1081 t~Dd~-----------~Ni~----iv~~ar~l~p~~~IIara~d~e--~~~~L~~-aGA--d~VI~p-~~~aa~~LA~~v 1139 (1173)
.+.+. .|+. ++..+++..|+..++.- .++. ....+.+ .|. .+|+-- +..-..++-+.+
T Consensus 78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~-tNP~d~~~~~~~~~s~~~~~~viG~gt~lds~r~~~~l 156 (307)
T PRK06223 78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVV-TNPVDAMTYVALKESGFPKNRVIGMAGVLDSARFRTFI 156 (307)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe-cCcHHHHHHHHHHHhCCCcccEEEeCCCcHHHHHHHHH
Confidence 64332 3433 34455666677544444 4432 3333333 343 456643 333345555555
Q ss_pred HHhcCCCHHH
Q 001051 1140 LAQAKLPASE 1149 (1173)
Q Consensus 1140 l~~l~~~~~e 1149 (1173)
-..++++.++
T Consensus 157 a~~l~v~~~~ 166 (307)
T PRK06223 157 AEELNVSVKD 166 (307)
T ss_pred HHHhCcChhh
Confidence 5555555443
No 376
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=77.64 E-value=3.3 Score=50.61 Aligned_cols=76 Identities=11% Similarity=0.079 Sum_probs=54.7
Q ss_pred ccccccccCCCccHHHHHHHHHhCCCCeEEecCCch---------------------HHHhhhhCCCCEEEecCCCHH-H
Q 001051 1008 LQDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSD---------------------RVAIGRALDLPVYFGDAGSRE-V 1065 (1173)
Q Consensus 1008 lk~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e---------------------~ve~l~~~g~~vi~GDasd~e-~ 1065 (1173)
...+++|+|.|..|...+..|.+.|++|+++|+.+. ..+.+.+.|..++.+.....+ .
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~~~ 221 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGKDIT 221 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECCcCC
Confidence 346899999999999999999999999999997642 234556678887776554221 1
Q ss_pred HhhcCccccCEEEEecCCC
Q 001051 1066 LHKVGAERACAAAITLDTP 1084 (1173)
Q Consensus 1066 Le~agI~~A~~VVi~t~Dd 1084 (1173)
.... ..+++.++++++..
T Consensus 222 ~~~~-~~~~d~vvlAtGa~ 239 (471)
T PRK12810 222 AEEL-LAEYDAVFLGTGAY 239 (471)
T ss_pred HHHH-HhhCCEEEEecCCC
Confidence 1111 13689999998764
No 377
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=77.64 E-value=2.9 Score=46.79 Aligned_cols=93 Identities=18% Similarity=0.164 Sum_probs=64.4
Q ss_pred cccccccCCCccHHHHHHHHHhCCC-CeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcch
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLI-PFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi-~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~N 1087 (1173)
+.||+|+|.|-+|...++.|.+.|+ ..++||.|.-.+..... +..+ ++++-..+
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NR----------------------Qi~A---~~~~iGk~ 84 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNR----------------------QIHA---LLGDIGKP 84 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccch----------------------hhHh---hhhhcccH
Confidence 4689999999999999999999998 79999988654432211 1111 22222222
Q ss_pred --HHHHHHHHhhCCCceEEEEe--cChhhHHHHHHCCCCeeec
Q 001051 1088 --YRTVWALSKYFPNVKTFVRA--HDIDHGLNLEKAGATAVVP 1126 (1173)
Q Consensus 1088 --i~iv~~ar~l~p~~~IIara--~d~e~~~~L~~aGAd~VI~ 1126 (1173)
-.+...+++.+|++++-++. .++++.+.|-.-+.|+||.
T Consensus 85 Kv~vm~eri~~InP~c~V~~~~~f~t~en~~~~~~~~~DyvID 127 (263)
T COG1179 85 KVEVMKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVID 127 (263)
T ss_pred HHHHHHHHHHhhCCCceEeehHhhhCHhHHHHHhcCCCCEEEE
Confidence 23455778889987776654 3677888777779999983
No 378
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=77.52 E-value=13 Score=40.39 Aligned_cols=113 Identities=19% Similarity=0.151 Sum_probs=67.1
Q ss_pred cccccccCCCccHHHHHHHHHhCCC-CeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcch
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLI-PFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi-~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~N 1087 (1173)
..+++|+|.|.+|..+++.|...|+ .++++|.|.-....+. ..+++.. +..|-. ..
T Consensus 21 ~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~---rqfl~~~-------~diG~~-------------Ka 77 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLG---AQFLIPA-------EDLGQN-------------RA 77 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCC---CCccccH-------HHcCch-------------HH
Confidence 4689999999999999999999998 5999998854333322 1122110 111111 22
Q ss_pred HHHHHHHHhhCCCceEEEEecChh--hHHHHHHCCCCeeecCC-cHHHHHHHHHHHHhcCCC
Q 001051 1088 YRTVWALSKYFPNVKTFVRAHDID--HGLNLEKAGATAVVPET-LEPSLQLAAAVLAQAKLP 1146 (1173)
Q Consensus 1088 i~iv~~ar~l~p~~~IIara~d~e--~~~~L~~aGAd~VI~p~-~~aa~~LA~~vl~~l~~~ 1146 (1173)
..+...+++++|++++-....... ..+.+ .+.|.||... ........+......++|
T Consensus 78 ~a~~~~L~~lNp~v~i~~~~~~~~~~~~~~~--~~~dvVi~~~~~~~~~~~ln~~c~~~~ip 137 (197)
T cd01492 78 EASLERLRALNPRVKVSVDTDDISEKPEEFF--SQFDVVVATELSRAELVKINELCRKLGVK 137 (197)
T ss_pred HHHHHHHHHHCCCCEEEEEecCccccHHHHH--hCCCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 446778899999987766544332 22223 3678877432 233334444444444443
No 379
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=77.51 E-value=1.7e+02 Score=35.12 Aligned_cols=67 Identities=15% Similarity=0.183 Sum_probs=40.1
Q ss_pred HHHHHHHhhcCChhHHHhchhhHHHHHHHHHHHHHHHHHHHHH-H--HhCCChHHHHHHhhccccCcHHH
Q 001051 662 VFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAH-F--VSGLPGPASIVIGNGLALSSTAV 728 (1173)
Q Consensus 662 ~~LLF~aGLEldl~~Lrr~~k~il~La~~~vllt~~~vgll~~-~--llGls~~~ALlLGaiLS~TSpaV 728 (1173)
.++++-+|-=+|+.-+..+.+..+.-+..++-+-....+.... + ..|++...|.-+|.+-.+=.|..
T Consensus 138 ~LIF~GIGAMtDFgpLlanP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTs 207 (433)
T PRK15477 138 LVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTA 207 (433)
T ss_pred HHHHHhccHHhcchHHhhCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchH
Confidence 3445557888999999999887665555554332211111111 1 13788888888887766544443
No 380
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=77.50 E-value=55 Score=38.51 Aligned_cols=74 Identities=23% Similarity=0.193 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhhcccCCcchhhHHHH
Q 001051 874 RGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFG 949 (1173)
Q Consensus 874 ~~~LlpiFFv~iGm~Idl~~L~~~~~lilllvvllvv~K~l~v~l~~~l~g~~~real~lGl~LaprGevalvla~ 949 (1173)
++++=|+.|+-+|..+|+.-+..+.... ++-....++-+ .+++.....|++..|+.-+|..-..-|-.++.+.+
T Consensus 68 ~~l~P~LIF~GIGAmtDFgpllanP~~~-llGaaAQ~Gif-~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~ 141 (360)
T PF03977_consen 68 NGLFPPLIFMGIGAMTDFGPLLANPKTL-LLGAAAQFGIF-ATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSS 141 (360)
T ss_pred cchhhHHHHHHHhHHHhhHHHHhCHHHH-HHHHHHHHhHH-HHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHH
Confidence 5688888999999999999988766542 33333444444 44555566799999999999987777776665544
No 381
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=77.46 E-value=2.7 Score=46.36 Aligned_cols=73 Identities=14% Similarity=0.097 Sum_probs=53.7
Q ss_pred ccccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhh----hCC--CCEEEecCCCHHHHhhcC------ccccCE
Q 001051 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGR----ALD--LPVYFGDAGSREVLHKVG------AERACA 1076 (1173)
Q Consensus 1010 ~hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~----~~g--~~vi~GDasd~e~Le~ag------I~~A~~ 1076 (1173)
+.++|.| .|.+|..+++.|.++|++|++++++++..+... ..+ ...+.+|.+|++.++++- ....|.
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~~id~ 92 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFGHVDI 92 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence 4567776 588999999999999999999999987665443 222 446889999998885421 125677
Q ss_pred EEEecC
Q 001051 1077 AAITLD 1082 (1173)
Q Consensus 1077 VVi~t~ 1082 (1173)
+|-..+
T Consensus 93 vi~~ag 98 (259)
T PRK08213 93 LVNNAG 98 (259)
T ss_pred EEECCC
Confidence 777654
No 382
>PRK13243 glyoxylate reductase; Reviewed
Probab=77.30 E-value=3.2 Score=48.61 Aligned_cols=86 Identities=16% Similarity=0.173 Sum_probs=55.2
Q ss_pred cccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchH
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni 1088 (1173)
.+++.|+|+|.+|+.+++.|...|.+|++.|+++.... ....+.. ..+ ++++ +.++|.|++.++....+.
T Consensus 150 gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~~~~-----~~~---l~el-l~~aDiV~l~lP~t~~T~ 219 (333)
T PRK13243 150 GKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-EKELGAE-----YRP---LEEL-LRESDFVSLHVPLTKETY 219 (333)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-HHHcCCE-----ecC---HHHH-HhhCCEEEEeCCCChHHh
Confidence 45788999999999999999999999999998765422 2222321 112 3332 457899999998765333
Q ss_pred HH--HHHHHhhCCCceEE
Q 001051 1089 RT--VWALSKYFPNVKTF 1104 (1173)
Q Consensus 1089 ~i--v~~ar~l~p~~~II 1104 (1173)
.+ ...+..+-++..+|
T Consensus 220 ~~i~~~~~~~mk~ga~lI 237 (333)
T PRK13243 220 HMINEERLKLMKPTAILV 237 (333)
T ss_pred hccCHHHHhcCCCCeEEE
Confidence 22 23344444443333
No 383
>PRK06181 short chain dehydrogenase; Provisional
Probab=77.29 E-value=2.8 Score=46.31 Aligned_cols=71 Identities=15% Similarity=0.081 Sum_probs=52.2
Q ss_pred cccccCC-CccHHHHHHHHHhCCCCeEEecCCchHHHhh----hhC--CCCEEEecCCCHHHHhhc------CccccCEE
Q 001051 1011 HIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIG----RAL--DLPVYFGDAGSREVLHKV------GAERACAA 1077 (1173)
Q Consensus 1011 hvIIiG~-G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l----~~~--g~~vi~GDasd~e~Le~a------gI~~A~~V 1077 (1173)
.++|.|. |.+|..+++.|.++|++|++++++++..+.. ... ...++.+|.++++.++++ .....+.+
T Consensus 3 ~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~v 82 (263)
T PRK06181 3 VVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGIDIL 82 (263)
T ss_pred EEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 4667775 8899999999999999999999997765433 222 355778999999887654 11256777
Q ss_pred EEec
Q 001051 1078 AITL 1081 (1173)
Q Consensus 1078 Vi~t 1081 (1173)
|-..
T Consensus 83 i~~a 86 (263)
T PRK06181 83 VNNA 86 (263)
T ss_pred EECC
Confidence 7654
No 384
>PLN02858 fructose-bisphosphate aldolase
Probab=77.14 E-value=9.2 Score=52.93 Aligned_cols=117 Identities=11% Similarity=-0.001 Sum_probs=76.1
Q ss_pred ccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchHH
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYR 1089 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni~ 1089 (1173)
+++-++|.|.+|..+++.|.+.|+++++.|+++++++.+.+.|.... .++.-+- ++++.|+++.+|++.-..
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~----~s~~e~a----~~advVi~~l~~~~~v~~ 76 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRC----DSPAEAA----KDAAALVVVLSHPDQVDD 76 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeec----CCHHHHH----hcCCEEEEEcCChHHHHH
Confidence 45778999999999999999999999999999999999988875432 2332221 368999999998864433
Q ss_pred HHH----HHHhhCCCceEEEEec--Chhh----HHHHHHCC--CCeeecCCcHHHHHHH
Q 001051 1090 TVW----ALSKYFPNVKTFVRAH--DIDH----GLNLEKAG--ATAVVPETLEPSLQLA 1136 (1173)
Q Consensus 1090 iv~----~ar~l~p~~~IIara~--d~e~----~~~L~~aG--Ad~VI~p~~~aa~~LA 1136 (1173)
+.. .+..+.++ .+++-.. +++. .+.+.+.| +..+=-| ...+..-|
T Consensus 77 V~~g~~g~~~~l~~g-~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaP-VsGg~~~A 133 (1378)
T PLN02858 77 VFFGDEGAAKGLQKG-AVILIRSTILPLQLQKLEKKLTERKEQIFLVDAY-VSKGMSDL 133 (1378)
T ss_pred HHhchhhHHhcCCCc-CEEEECCCCCHHHHHHHHHHHHhcCCceEEEEcc-CcCCHHHH
Confidence 321 22223343 3544333 4444 34456678 5544444 33444433
No 385
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=77.12 E-value=1.3e+02 Score=36.58 Aligned_cols=149 Identities=18% Similarity=0.166 Sum_probs=77.8
Q ss_pred HhchhHHHHHHHHHHhhcccchhHHHHHhHhhH------HHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHHH
Q 001051 841 RAGLSMALGAFLAGLLLAETEFSLQVESDIAPY------RGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTI 914 (1173)
Q Consensus 841 ~lGLS~vLGAFvAGLiLsn~~~~~~l~e~l~~~------~~~LlpiFFv~iGm~Idl~~L~~~~~lilllvvllvv~K~l 914 (1173)
++|...++.-|+...++-..-..+...+.+..+ .+|++...-+-.=+.+|-..+.....-.+..++..+++-.+
T Consensus 57 yiGGg~il~~f~ps~Lv~~~~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GSILgm~RklLika~~r~~p~il~g~~~a~~ 136 (414)
T PF03390_consen 57 YIGGGAILCIFVPSALVYFGLIPESVVEAVTNFMKGSNFLYFFIAALIVGSILGMNRKLLIKAFARFIPPILGGVIGAFL 136 (414)
T ss_pred cCChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCChHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555554433333333333333 23444433333334667777766543334444444555666
Q ss_pred HHHHHHHhcCCChhhhhhh-hh-cccCCcchhhHHHHHHHh--hccchhhhHHHHHHHHHHHHHHHHHHHhhhhhHHhh
Q 001051 915 LVALVGRLFGVSVISAIRT-GL-LLAPGGEFAFVAFGEAVN--QGIMSSQLSSLLFLLVGISMALTPWLAAGGQLIASR 989 (1173)
Q Consensus 915 ~v~l~~~l~g~~~real~l-Gl-~LaprGevalvla~lAl~--~giis~el~silvlvVvlS~iItPiL~~~~~~La~r 989 (1173)
.+.+.+.++|.+++++++. .+ .|+-.-.-+.+.++..+. .|.-.++.++.++-.+++.-+++=+.+..++++.+|
T Consensus 137 ~g~lvG~l~G~~~~~~i~~i~lPIMgGG~GaGavPLS~~Ya~~~g~~~~~~~s~~ipa~~lgNi~AIi~aglL~~lg~~ 215 (414)
T PF03390_consen 137 LGGLVGMLFGYSFKDAIFYIVLPIMGGGMGAGAVPLSQIYAEALGQDAEEYFSQLIPALTLGNIFAIIFAGLLNKLGKK 215 (414)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhhhcCCCccccHhHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7777888899999988742 22 122222233444444333 244456777777766666655555554444444444
No 386
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=77.09 E-value=21 Score=37.09 Aligned_cols=61 Identities=25% Similarity=0.328 Sum_probs=54.7
Q ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 001051 269 LLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANI 329 (1173)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~a~~~~~~~ 329 (1173)
-...+...+++........|.|+..||.|..-|+.+|+++++....++.+....+...++.
T Consensus 15 r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~ 75 (143)
T PF12718_consen 15 RAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNA 75 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhH
Confidence 3566788999999999999999999999999999999999999999999988888877663
No 387
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=77.05 E-value=6.6 Score=45.88 Aligned_cols=131 Identities=17% Similarity=0.175 Sum_probs=75.9
Q ss_pred ccccccCCCccHHHHHHHHHhCCC-CeEEecCCchHHH--hh---hh---CCCC-EEEecCCCHHHHhhcCccccCEEEE
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLI-PFVALDVRSDRVA--IG---RA---LDLP-VYFGDAGSREVLHKVGAERACAAAI 1079 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi-~VvVID~D~e~ve--~l---~~---~g~~-vi~GDasd~e~Le~agI~~A~~VVi 1079 (1173)
..+.|+|.|.+|..++..+...|. +++++|.|++..+ .+ .. .+.+ -+.+. +| ++ .+.+||.||.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~-~d---~~--~l~~aDiVI~ 80 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGT-NN---YE--DIAGSDVVIV 80 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEEC-CC---HH--HhCCCCEEEE
Confidence 478999999999999999988885 8999999998542 11 11 1222 23321 12 22 3568999998
Q ss_pred ecCCC----------------cchHH----HHHHHHhhCCCceEEEEecChh--hHHHHHH-CCC--CeeecCC-cHHHH
Q 001051 1080 TLDTP----------------GANYR----TVWALSKYFPNVKTFVRAHDID--HGLNLEK-AGA--TAVVPET-LEPSL 1133 (1173)
Q Consensus 1080 ~t~Dd----------------~~Ni~----iv~~ar~l~p~~~IIara~d~e--~~~~L~~-aGA--d~VI~p~-~~aa~ 1133 (1173)
+.+.+ ..|.. ++..+.+..|+..++. +.++. ....+.+ .|. ++||--. ..-+.
T Consensus 81 tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv-~sNP~di~t~~~~~~sg~p~~rviGlgt~lds~ 159 (321)
T PTZ00082 81 TAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIV-ITNPLDVMVKLLQEHSGLPKNKVCGMAGVLDSS 159 (321)
T ss_pred CCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEE-ecCcHHHHHHHHHHhcCCChhhEEEecCcccHH
Confidence 76432 22433 4456677788754444 44543 2334433 343 4666433 33334
Q ss_pred HHHHHHHHhcCCCH
Q 001051 1134 QLAAAVLAQAKLPA 1147 (1173)
Q Consensus 1134 ~LA~~vl~~l~~~~ 1147 (1173)
++-+.+...++++.
T Consensus 160 R~~~~la~~l~v~~ 173 (321)
T PTZ00082 160 RLRTYIAEKLGVNP 173 (321)
T ss_pred HHHHHHHHHhCCCc
Confidence 45555555454443
No 388
>PLN02253 xanthoxin dehydrogenase
Probab=77.02 E-value=3.4 Score=46.18 Aligned_cols=72 Identities=10% Similarity=0.077 Sum_probs=52.5
Q ss_pred ccccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhh-----CCCCEEEecCCCHHHHhhcCc------cccCEE
Q 001051 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-----LDLPVYFGDAGSREVLHKVGA------ERACAA 1077 (1173)
Q Consensus 1010 ~hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~-----~g~~vi~GDasd~e~Le~agI------~~A~~V 1077 (1173)
+.++|.| .+.+|..+++.|.++|+.|++++++++..+...+ ....++.+|.+|++.++++-- .+.|.+
T Consensus 19 k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~id~l 98 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFGTLDIM 98 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhCCCCEE
Confidence 3466666 5679999999999999999999998766544322 245688999999988765421 256777
Q ss_pred EEec
Q 001051 1078 AITL 1081 (1173)
Q Consensus 1078 Vi~t 1081 (1173)
|-..
T Consensus 99 i~~A 102 (280)
T PLN02253 99 VNNA 102 (280)
T ss_pred EECC
Confidence 6544
No 389
>PRK08309 short chain dehydrogenase; Provisional
Probab=77.00 E-value=3.3 Score=44.18 Aligned_cols=87 Identities=9% Similarity=-0.036 Sum_probs=60.4
Q ss_pred cccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhh-----CCCCEEEecCCCHHHHhhcC------ccccCEEEE
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-----LDLPVYFGDAGSREVLHKVG------AERACAAAI 1079 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~-----~g~~vi~GDasd~e~Le~ag------I~~A~~VVi 1079 (1173)
+++|.|...++..+++.|.+.|++|++++++++..+.+.. .....+.+|.+|++.+.++= ....+.++.
T Consensus 2 ~vlVtGGtG~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~id~lv~ 81 (177)
T PRK08309 2 HALVIGGTGMLKRVSLWLCEKGFHVSVIARREVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTIEKNGPFDLAVA 81 (177)
T ss_pred EEEEECcCHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 4678887778888999999999999999999887765533 23455678999988776431 124566676
Q ss_pred ecCCCcchHHHHHHHHhhC
Q 001051 1080 TLDTPGANYRTVWALSKYF 1098 (1173)
Q Consensus 1080 ~t~Dd~~Ni~iv~~ar~l~ 1098 (1173)
....+. .-.++..+++.+
T Consensus 82 ~vh~~~-~~~~~~~~~~~g 99 (177)
T PRK08309 82 WIHSSA-KDALSVVCRELD 99 (177)
T ss_pred eccccc-hhhHHHHHHHHc
Confidence 666553 334445555555
No 390
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=76.96 E-value=2.8 Score=49.40 Aligned_cols=107 Identities=17% Similarity=0.171 Sum_probs=67.9
Q ss_pred ccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCc-cccCEEEEecCCCcchHHH
Q 001051 1012 IILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGA-ERACAAAITLDTPGANYRT 1090 (1173)
Q Consensus 1012 vIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI-~~A~~VVi~t~Dd~~Ni~i 1090 (1173)
+.|+|.|..|..+++.+.+.|++|+++|.+++..... ..-..+.+|..|++.+.+.-- .+.|.|+...++- +...
T Consensus 2 ililG~g~~~~~l~~aa~~~G~~v~~~d~~~~~~~~~--~ad~~~~~~~~d~~~l~~~~~~~~id~v~~~~e~v--~~~~ 77 (380)
T TIGR01142 2 VLLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQ--VAHRSYVINMLDGDALRAVIEREKPDYIVPEIEAI--ATDA 77 (380)
T ss_pred EEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhh--hCceEEEcCCCCHHHHHHHHHHhCCCEEEeccCcc--CHHH
Confidence 6789999999999999999999999999997653221 223456788889888765422 3688876655543 2222
Q ss_pred HHHHHhhC----CCceEEEEecChhhHHH-H-HHCCCC
Q 001051 1091 VWALSKYF----PNVKTFVRAHDIDHGLN-L-EKAGAT 1122 (1173)
Q Consensus 1091 v~~ar~l~----p~~~IIara~d~e~~~~-L-~~aGAd 1122 (1173)
...+.+.+ |+...+..+.|...... + ++.|+.
T Consensus 78 ~~~l~~~g~~~~~~~~~~~~~~dK~~~~~~~~~~~gip 115 (380)
T TIGR01142 78 LFELEKEGYFVVPNARATKLTMNREGIRRLAAEELGLP 115 (380)
T ss_pred HHHHHhcCCeeCCCHHHHHHhhCHHHHHHHHHHHCCCC
Confidence 23333332 23333334445544443 2 677875
No 391
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=76.83 E-value=3.3 Score=55.05 Aligned_cols=75 Identities=19% Similarity=0.119 Sum_probs=56.2
Q ss_pred cccccccCCCccHHHHHHHHHhCCCCeEEecCCc---------------------hHHHhhhhCCCCEEEecCCCHH-HH
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRS---------------------DRVAIGRALDLPVYFGDAGSRE-VL 1066 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~---------------------e~ve~l~~~g~~vi~GDasd~e-~L 1066 (1173)
.+.|+|+|.|+.|...|..|.+.|++|+|+|.++ ..++.+++.|..+..+.....+ ++
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~dit~ 385 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGKTATL 385 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEeccEEeH
Confidence 5789999999999999999999999999999864 1234566778876665433222 34
Q ss_pred hhcCccccCEEEEecCC
Q 001051 1067 HKVGAERACAAAITLDT 1083 (1173)
Q Consensus 1067 e~agI~~A~~VVi~t~D 1083 (1173)
+++.-.++|+|+++++-
T Consensus 386 ~~l~~~~yDAV~LAtGA 402 (944)
T PRK12779 386 EDLKAAGFWKIFVGTGA 402 (944)
T ss_pred HHhccccCCEEEEeCCC
Confidence 44433468999999976
No 392
>PRK08251 short chain dehydrogenase; Provisional
Probab=76.73 E-value=3.4 Score=45.05 Aligned_cols=71 Identities=15% Similarity=0.178 Sum_probs=52.7
Q ss_pred cccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhh--------CCCCEEEecCCCHHHHhhc------CccccC
Q 001051 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA--------LDLPVYFGDAGSREVLHKV------GAERAC 1075 (1173)
Q Consensus 1011 hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~--------~g~~vi~GDasd~e~Le~a------gI~~A~ 1075 (1173)
.++|.| .+.+|..+++.|.++|.+|+++++++++.+.... ....++.+|.++++.++++ .....|
T Consensus 4 ~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 83 (248)
T PRK08251 4 KILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGGLD 83 (248)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 466666 7789999999999999999999999887654421 1356778999999876542 123567
Q ss_pred EEEEec
Q 001051 1076 AAAITL 1081 (1173)
Q Consensus 1076 ~VVi~t 1081 (1173)
.+|...
T Consensus 84 ~vi~~a 89 (248)
T PRK08251 84 RVIVNA 89 (248)
T ss_pred EEEECC
Confidence 777665
No 393
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=76.72 E-value=3.2 Score=45.23 Aligned_cols=73 Identities=12% Similarity=0.109 Sum_probs=54.7
Q ss_pred ccccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhh------CCCCEEEecCCCHHHHhhcC------ccccCE
Q 001051 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA------LDLPVYFGDAGSREVLHKVG------AERACA 1076 (1173)
Q Consensus 1010 ~hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~------~g~~vi~GDasd~e~Le~ag------I~~A~~ 1076 (1173)
+.++|.| .|.+|..+++.|.+.|..|++++++++..+.+.+ ....++.+|.++++.++++- ....|.
T Consensus 4 ~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~d~ 83 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGPVDV 83 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 3466666 6889999999999999999999999877654422 23667899999998877641 124677
Q ss_pred EEEecC
Q 001051 1077 AAITLD 1082 (1173)
Q Consensus 1077 VVi~t~ 1082 (1173)
+|....
T Consensus 84 vi~~ag 89 (250)
T TIGR03206 84 LVNNAG 89 (250)
T ss_pred EEECCC
Confidence 777664
No 394
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=76.68 E-value=11 Score=41.66 Aligned_cols=114 Identities=16% Similarity=0.131 Sum_probs=66.9
Q ss_pred cccccccCCCccHHHHHHHHHhCCC-CeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcch
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLI-PFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi-~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~N 1087 (1173)
+.+++|+|.|.+|..+++.|...|+ .++++|.|.-....+. .+.++.+ ... +. ...
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~---Rq~l~~~-------~di------------G~-~Ka 77 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQ---RQILHTE-------ADV------------GQ-PKA 77 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccc---cccccCh-------hhC------------CC-hHH
Confidence 4689999999999999999999998 7999998854332221 1111100 001 11 133
Q ss_pred HHHHHHHHhhCCCceEEEEecChh--hHHHHHHCCCCeeecCC-cHHHHHHHHHHHHhcCCC
Q 001051 1088 YRTVWALSKYFPNVKTFVRAHDID--HGLNLEKAGATAVVPET-LEPSLQLAAAVLAQAKLP 1146 (1173)
Q Consensus 1088 i~iv~~ar~l~p~~~IIara~d~e--~~~~L~~aGAd~VI~p~-~~aa~~LA~~vl~~l~~~ 1146 (1173)
-.+...+++++|++++-....+.. +...+ -.+.|.||.-. ...+..+.+......++|
T Consensus 78 ~~~~~~l~~~np~~~i~~~~~~i~~~~~~~~-~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip 138 (228)
T cd00757 78 EAAAERLRAINPDVEIEAYNERLDAENAEEL-IAGYDLVLDCTDNFATRYLINDACVKLGKP 138 (228)
T ss_pred HHHHHHHHHhCCCCEEEEecceeCHHHHHHH-HhCCCEEEEcCCCHHHHHHHHHHHHHcCCC
Confidence 456778889999887766654432 22111 13588888432 223344444444444443
No 395
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=76.66 E-value=3.8 Score=44.67 Aligned_cols=71 Identities=11% Similarity=0.045 Sum_probs=51.2
Q ss_pred cccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhh------CCCCEEEecCCCHHHHhhc------CccccCEE
Q 001051 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA------LDLPVYFGDAGSREVLHKV------GAERACAA 1077 (1173)
Q Consensus 1011 hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~------~g~~vi~GDasd~e~Le~a------gI~~A~~V 1077 (1173)
.++|.| .|.+|..+++.|.++|++|++++++++..+.+.+ ..+..+.+|.++++.+..+ .....+.+
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~v 82 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGLDIL 82 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 456666 6899999999999999999999999876654432 2356788999999854322 12346666
Q ss_pred EEec
Q 001051 1078 AITL 1081 (1173)
Q Consensus 1078 Vi~t 1081 (1173)
|...
T Consensus 83 i~~a 86 (255)
T TIGR01963 83 VNNA 86 (255)
T ss_pred EECC
Confidence 6544
No 396
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=76.65 E-value=6 Score=48.89 Aligned_cols=74 Identities=14% Similarity=-0.033 Sum_probs=50.0
Q ss_pred cccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhC------CCCE-------EEecCCCHHHHhhcCccccCEE
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL------DLPV-------YFGDAGSREVLHKVGAERACAA 1077 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~------g~~v-------i~GDasd~e~Le~agI~~A~~V 1077 (1173)
++-++|.|.+|..++..|...|++|++.|.+++..+.+.+. ...- ..|...-.+.+.+ -+++||.|
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~e-a~~~aD~V 84 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAE-AVAGADWI 84 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHH-HhcCCCEE
Confidence 47789999999999999999999999999999987654210 0000 0011111112322 24679999
Q ss_pred EEecCCCc
Q 001051 1078 AITLDTPG 1085 (1173)
Q Consensus 1078 Vi~t~Dd~ 1085 (1173)
+.+++++.
T Consensus 85 ieavpe~~ 92 (495)
T PRK07531 85 QESVPERL 92 (495)
T ss_pred EEcCcCCH
Confidence 99998874
No 397
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=76.61 E-value=7.2 Score=43.69 Aligned_cols=66 Identities=12% Similarity=0.114 Sum_probs=45.6
Q ss_pred cccccCCCccHHHHHHHHHhCCCC---eEEecCCchHHHhhhhC--CCCEEEecCCCHHHHhhcCccccCEEEEecCCC
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIP---FVALDVRSDRVAIGRAL--DLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~---VvVID~D~e~ve~l~~~--g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd 1084 (1173)
++-++|.|.+|..+++.|.+.|++ +.+.++++++.+.+.+. +..+ ..| ..+. ++++|.|+++++++
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~-~~~--~~~~-----~~~aDvVilav~p~ 72 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRI-AKD--NQAV-----VDRSDVVFLAVRPQ 72 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceE-eCC--HHHH-----HHhCCEEEEEeCHH
Confidence 367899999999999999988754 47888998888777654 2222 211 1122 23578888888753
No 398
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=76.58 E-value=7.2 Score=47.34 Aligned_cols=70 Identities=23% Similarity=0.286 Sum_probs=51.0
Q ss_pred cccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHH----------hhcCccccCEEEEe
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVL----------HKVGAERACAAAIT 1080 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~L----------e~agI~~A~~VVi~ 1080 (1173)
.+.++|.|.+|..++..|.+ +++|+++|.|+++++.+. .|...+. ++.-++.. .+ .+.+++.++++
T Consensus 8 kI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~-e~~~~~l~~~g~l~~t~~~~-~~~~advvii~ 83 (425)
T PRK15182 8 KIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNL-ETTEEELREARYLKFTSEIE-KIKECNFYIIT 83 (425)
T ss_pred eEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCC-CCCHHHHHhhCCeeEEeCHH-HHcCCCEEEEE
Confidence 47789999999999999887 699999999999999998 4443211 11000000 11 26789999999
Q ss_pred cCCC
Q 001051 1081 LDTP 1084 (1173)
Q Consensus 1081 t~Dd 1084 (1173)
.+++
T Consensus 84 Vptp 87 (425)
T PRK15182 84 VPTP 87 (425)
T ss_pred cCCC
Confidence 9887
No 399
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.55 E-value=6.7 Score=47.37 Aligned_cols=73 Identities=16% Similarity=0.117 Sum_probs=52.4
Q ss_pred ccccccCCCccHHHHHHHHHhCCCCeEEecCCch----HHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCc
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSD----RVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e----~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~ 1085 (1173)
++++|+|.|..|..+++.|.+.|..|++.|.++. ..+.+++.|..+..|+-.. +.+.. .++.||...+-+.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~-~~~~~----~~d~vV~s~gi~~ 80 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPL-ELLDE----DFDLMVKNPGIPY 80 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCH-HHhcC----cCCEEEECCCCCC
Confidence 4689999999999999999999999999997652 3355677788877764322 22211 3777777665554
Q ss_pred ch
Q 001051 1086 AN 1087 (1173)
Q Consensus 1086 ~N 1087 (1173)
.|
T Consensus 81 ~~ 82 (447)
T PRK02472 81 TN 82 (447)
T ss_pred CC
Confidence 44
No 400
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=76.54 E-value=1.8e+02 Score=34.92 Aligned_cols=67 Identities=15% Similarity=0.183 Sum_probs=40.0
Q ss_pred HHHHHHHhhcCChhHHHhchhhHHHHHHHHHHHHHHHHHHHHH-H--HhCCChHHHHHHhhccccCcHHH
Q 001051 662 VFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAH-F--VSGLPGPASIVIGNGLALSSTAV 728 (1173)
Q Consensus 662 ~~LLF~aGLEldl~~Lrr~~k~il~La~~~vllt~~~vgll~~-~--llGls~~~ALlLGaiLS~TSpaV 728 (1173)
.++++-+|-=+|+.-+..+.+..+.-+..++-+-....+.... + ..|++...|.-+|.+-.+=.|..
T Consensus 138 ~LIF~GIGAMtDFgpLlanP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTs 207 (433)
T PRK15476 138 LVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTA 207 (433)
T ss_pred HHHHHhccHHhcchHHhhCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchH
Confidence 3445557888999999999887665555554332211111111 1 13788888888887766544443
No 401
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=76.49 E-value=5.7 Score=47.91 Aligned_cols=74 Identities=18% Similarity=0.224 Sum_probs=57.5
Q ss_pred cccccccCCCccHHHHHHHHHhCC-CCeEEecCCchHHHhhh-hCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcc
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERL-IPFVALDVRSDRVAIGR-ALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~g-i~VvVID~D~e~ve~l~-~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~ 1086 (1173)
..+++++|+|.+|.-+++.|.+.| ..++|..+..++.+.+. +.| |++...+-+.. .+.++|.||.+|+.+..
T Consensus 178 ~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~-----~~~~~l~el~~-~l~~~DvVissTsa~~~ 251 (414)
T COG0373 178 DKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLG-----AEAVALEELLE-ALAEADVVISSTSAPHP 251 (414)
T ss_pred cCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhC-----CeeecHHHHHH-hhhhCCEEEEecCCCcc
Confidence 467999999999999999999999 57889999999988774 445 44444444433 35689999999988754
Q ss_pred hH
Q 001051 1087 NY 1088 (1173)
Q Consensus 1087 Ni 1088 (1173)
.+
T Consensus 252 ii 253 (414)
T COG0373 252 II 253 (414)
T ss_pred cc
Confidence 43
No 402
>PRK08013 oxidoreductase; Provisional
Probab=76.45 E-value=1.9 Score=51.21 Aligned_cols=63 Identities=22% Similarity=0.225 Sum_probs=44.1
Q ss_pred ccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhh-hhCCCCEEEecCCCHHHHhhcCcc
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIG-RALDLPVYFGDAGSREVLHKVGAE 1072 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l-~~~g~~vi~GDasd~e~Le~agI~ 1072 (1173)
..++|+|.|..|..+|-.|.+.|++|+++|+++...... ...+.....-++...+.|+++|+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~ 67 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVW 67 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCc
Confidence 368999999999999999999999999999987632111 011122333345556777777763
No 403
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=76.44 E-value=6.2 Score=48.11 Aligned_cols=74 Identities=18% Similarity=0.231 Sum_probs=55.2
Q ss_pred ccccccCCCccHHH-HHHHHHhCCCCeEEecCCch-HHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcch
Q 001051 1010 DHIILCGFGRVGQI-IAQLLSERLIPFVALDVRSD-RVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~-Ia~~L~~~gi~VvVID~D~e-~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~N 1087 (1173)
+++.|+|.|..|.. +++.|.++|++|++.|.++. ..+.+++.|..++.|. +++.+ +++|.||+..+-+..|
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~--~~~~~-----~~~d~vv~spgi~~~~ 80 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGH--DAENI-----KDADVVVYSSAIPDDN 80 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCC--CHHHC-----CCCCEEEECCCCCCCC
Confidence 46899999999999 79999999999999998753 3455677788777654 34433 3578888777666555
Q ss_pred HHH
Q 001051 1088 YRT 1090 (1173)
Q Consensus 1088 i~i 1090 (1173)
-.+
T Consensus 81 ~~~ 83 (461)
T PRK00421 81 PEL 83 (461)
T ss_pred HHH
Confidence 433
No 404
>PRK08267 short chain dehydrogenase; Provisional
Probab=76.36 E-value=3.9 Score=45.07 Aligned_cols=72 Identities=17% Similarity=0.055 Sum_probs=54.9
Q ss_pred cccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhh----CCCCEEEecCCCHHHHhhc--C-----ccccCEEE
Q 001051 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA----LDLPVYFGDAGSREVLHKV--G-----AERACAAA 1078 (1173)
Q Consensus 1011 hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~----~g~~vi~GDasd~e~Le~a--g-----I~~A~~VV 1078 (1173)
.++|.| .|.+|..+++.|.++|..|++++++++..+.+.. ....++.+|.++++.++++ + ..+.|.+|
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~vi 82 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDVLF 82 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCEEE
Confidence 466666 5789999999999999999999999988766543 2467889999998877654 1 22457777
Q ss_pred EecC
Q 001051 1079 ITLD 1082 (1173)
Q Consensus 1079 i~t~ 1082 (1173)
-..+
T Consensus 83 ~~ag 86 (260)
T PRK08267 83 NNAG 86 (260)
T ss_pred ECCC
Confidence 6553
No 405
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=76.31 E-value=14 Score=43.01 Aligned_cols=131 Identities=18% Similarity=0.152 Sum_probs=77.8
Q ss_pred ccccccCCCccHHHHHHHHHhCCC--CeEEecCCchHHH----hhhhC----CCCEEEecCCCHHHHhhcCccccCEEEE
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLI--PFVALDVRSDRVA----IGRAL----DLPVYFGDAGSREVLHKVGAERACAAAI 1079 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi--~VvVID~D~e~ve----~l~~~----g~~vi~GDasd~e~Le~agI~~A~~VVi 1079 (1173)
.++.|+|.|.+|..++..|...|+ +++++|.+++..+ .+++. ....+.+ .+ .+ ...+||.||+
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~--~~---~~--~~~~adivIi 79 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYA--GD---YS--DCKDADLVVI 79 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEe--CC---HH--HhCCCCEEEE
Confidence 478999999999999999998888 7999999887653 22221 1112222 12 22 2568999999
Q ss_pred ecCCCc-----------chHHH----HHHHHhhCCCceEEEEecChh--hHHHHHH-CCC--CeeecC-CcHHHHHHHHH
Q 001051 1080 TLDTPG-----------ANYRT----VWALSKYFPNVKTFVRAHDID--HGLNLEK-AGA--TAVVPE-TLEPSLQLAAA 1138 (1173)
Q Consensus 1080 ~t~Dd~-----------~Ni~i----v~~ar~l~p~~~IIara~d~e--~~~~L~~-aGA--d~VI~p-~~~aa~~LA~~ 1138 (1173)
+.+.+. .|..+ +..+++.+|+..+++-. +|. ....+.+ .|. .+||-- +..=..++-+.
T Consensus 80 tag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs-NP~d~~~~~~~k~sg~p~~~viG~gt~LDs~R~~~~ 158 (315)
T PRK00066 80 TAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS-NPVDILTYATWKLSGFPKERVIGSGTSLDSARFRYM 158 (315)
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc-CcHHHHHHHHHHHhCCCHHHEeecCchHHHHHHHHH
Confidence 887642 35444 45677778886655544 443 2223322 332 234422 22334455555
Q ss_pred HHHhcCCCHH
Q 001051 1139 VLAQAKLPAS 1148 (1173)
Q Consensus 1139 vl~~l~~~~~ 1148 (1173)
+...++++..
T Consensus 159 la~~l~v~~~ 168 (315)
T PRK00066 159 LSEKLDVDPR 168 (315)
T ss_pred HHHHhCCCcc
Confidence 5555555543
No 406
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=76.28 E-value=2.7 Score=53.61 Aligned_cols=74 Identities=18% Similarity=0.223 Sum_probs=52.4
Q ss_pred cccccccCCCccHHHHHHHHHhCCCCeEEecCCch---------------------HHHhhhhCCCCEEEecCCCHH-HH
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSD---------------------RVAIGRALDLPVYFGDAGSRE-VL 1066 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e---------------------~ve~l~~~g~~vi~GDasd~e-~L 1066 (1173)
.++++|+|.|..|...|..|.+.|++|+++|+++. ..+.+++.|..+..+.....+ .+
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i~~ 406 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDISL 406 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcCCH
Confidence 46899999999999999999999999999998753 244556667766654321111 11
Q ss_pred hhcCccccCEEEEecCC
Q 001051 1067 HKVGAERACAAAITLDT 1083 (1173)
Q Consensus 1067 e~agI~~A~~VVi~t~D 1083 (1173)
+... .++|.|+++++.
T Consensus 407 ~~~~-~~~DavilAtGa 422 (654)
T PRK12769 407 ESLL-EDYDAVFVGVGT 422 (654)
T ss_pred HHHH-hcCCEEEEeCCC
Confidence 2211 368999998875
No 407
>PRK06500 short chain dehydrogenase; Provisional
Probab=76.23 E-value=3.7 Score=44.67 Aligned_cols=72 Identities=18% Similarity=0.134 Sum_probs=51.9
Q ss_pred ccccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhh-CC--CCEEEecCCCHHHHhhc------CccccCEEEE
Q 001051 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-LD--LPVYFGDAGSREVLHKV------GAERACAAAI 1079 (1173)
Q Consensus 1010 ~hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~-~g--~~vi~GDasd~e~Le~a------gI~~A~~VVi 1079 (1173)
+.++|.| .|.+|+.+++.|.++|+.|++++++++..+...+ .+ ...+.+|.++++.++.+ ...+.|.+|-
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~ 86 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAEAFGRLDAVFI 86 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 4577776 4889999999999999999999999876655432 23 44678999998765432 1135677765
Q ss_pred ec
Q 001051 1080 TL 1081 (1173)
Q Consensus 1080 ~t 1081 (1173)
..
T Consensus 87 ~a 88 (249)
T PRK06500 87 NA 88 (249)
T ss_pred CC
Confidence 44
No 408
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=76.20 E-value=4.4 Score=43.69 Aligned_cols=72 Identities=17% Similarity=0.095 Sum_probs=52.6
Q ss_pred ccccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhh----hhCC--CCEEEecCCCHHHHhhcC--c----cccCE
Q 001051 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIG----RALD--LPVYFGDAGSREVLHKVG--A----ERACA 1076 (1173)
Q Consensus 1010 ~hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l----~~~g--~~vi~GDasd~e~Le~ag--I----~~A~~ 1076 (1173)
+.++|.| .|.+|..+++.|.++|+.|++++++++..+.. +..+ ..++.+|.++++.+.++- + ...+.
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 85 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFGALDI 85 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence 3567776 58899999999999999999999998775433 2233 446669999998775541 1 24577
Q ss_pred EEEec
Q 001051 1077 AAITL 1081 (1173)
Q Consensus 1077 VVi~t 1081 (1173)
+|-..
T Consensus 86 vi~~a 90 (246)
T PRK05653 86 LVNNA 90 (246)
T ss_pred EEECC
Confidence 77765
No 409
>PLN02214 cinnamoyl-CoA reductase
Probab=76.19 E-value=4.3 Score=47.32 Aligned_cols=72 Identities=17% Similarity=0.093 Sum_probs=53.6
Q ss_pred ccccccCC-CccHHHHHHHHHhCCCCeEEecCCchHHH-----hhhh--CCCCEEEecCCCHHHHhhcCccccCEEEEec
Q 001051 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVA-----IGRA--LDLPVYFGDAGSREVLHKVGAERACAAAITL 1081 (1173)
Q Consensus 1010 ~hvIIiG~-G~~G~~Ia~~L~~~gi~VvVID~D~e~ve-----~l~~--~g~~vi~GDasd~e~Le~agI~~A~~VVi~t 1081 (1173)
++++|.|. |-+|..+++.|.++|++|++++++.+... .+.. ..+.++.||.++++.+.++ +..+|+||-+.
T Consensus 11 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~~~~d~Vih~A 89 (342)
T PLN02214 11 KTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAA-IDGCDGVFHTA 89 (342)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHH-HhcCCEEEEec
Confidence 45788886 89999999999999999999988765421 1111 1355788999999988765 34577877665
Q ss_pred C
Q 001051 1082 D 1082 (1173)
Q Consensus 1082 ~ 1082 (1173)
.
T Consensus 90 ~ 90 (342)
T PLN02214 90 S 90 (342)
T ss_pred C
Confidence 3
No 410
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=76.18 E-value=4.6 Score=43.76 Aligned_cols=73 Identities=15% Similarity=0.183 Sum_probs=54.6
Q ss_pred ccccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhh---CCCCEEEecCCCHHHHhhc------CccccCEEEE
Q 001051 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA---LDLPVYFGDAGSREVLHKV------GAERACAAAI 1079 (1173)
Q Consensus 1010 ~hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~---~g~~vi~GDasd~e~Le~a------gI~~A~~VVi 1079 (1173)
+.++|.| .|.+|..+++.|.++|+.|++.+++++..+.... ....++.+|.++.+.++++ .....|.+|-
T Consensus 7 ~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~ 86 (245)
T PRK12936 7 RKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAELGERVKIFPANLSDRDEVKALGQKAEADLEGVDILVN 86 (245)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 4567766 6889999999999999999999988877665432 2356778999999988764 1235677776
Q ss_pred ecC
Q 001051 1080 TLD 1082 (1173)
Q Consensus 1080 ~t~ 1082 (1173)
...
T Consensus 87 ~ag 89 (245)
T PRK12936 87 NAG 89 (245)
T ss_pred CCC
Confidence 554
No 411
>PLN02735 carbamoyl-phosphate synthase
Probab=76.14 E-value=2.4 Score=57.25 Aligned_cols=78 Identities=15% Similarity=0.254 Sum_probs=60.0
Q ss_pred cccccccCCCc--cHH---------HHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEE
Q 001051 1009 QDHIILCGFGR--VGQ---------IIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAA 1077 (1173)
Q Consensus 1009 k~hvIIiG~G~--~G~---------~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~V 1077 (1173)
++.++|+|.|. +|+ .+++.|++.|+++++|+.||+.+-.-.+..-..++-+.+-+++++-+.-++.++|
T Consensus 574 ~kkvlilG~G~~~igq~iefd~~~v~~~~alr~~G~~tI~v~~npetvstd~~~aD~~y~~pl~~e~vl~i~~~e~~d~V 653 (1102)
T PLN02735 574 KKKVLILGGGPNRIGQGIEFDYCCCHASFALQDAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPDGI 653 (1102)
T ss_pred CceEEEeCccccccCcccccceeHHHHHHHHHHcCCeEEEEeCCCccccCCcccCCeEEEEeCCHHHHHHHHHHhCCCEE
Confidence 57889999887 564 3679999999999999999998654333444566666777777777888899998
Q ss_pred EEecCCCcc
Q 001051 1078 AITLDTPGA 1086 (1173)
Q Consensus 1078 Vi~t~Dd~~ 1086 (1173)
+...+.+..
T Consensus 654 i~~~Ggq~~ 662 (1102)
T PLN02735 654 IVQFGGQTP 662 (1102)
T ss_pred EECCCchHH
Confidence 887776643
No 412
>PRK05717 oxidoreductase; Validated
Probab=76.08 E-value=4.4 Score=44.59 Aligned_cols=72 Identities=18% Similarity=0.042 Sum_probs=51.5
Q ss_pred ccccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhh-hC--CCCEEEecCCCHHHHhhc------CccccCEEEE
Q 001051 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGR-AL--DLPVYFGDAGSREVLHKV------GAERACAAAI 1079 (1173)
Q Consensus 1010 ~hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~-~~--g~~vi~GDasd~e~Le~a------gI~~A~~VVi 1079 (1173)
+.++|.| .|.+|..+++.|.++|.+|++++++++..+... .. ...++.+|.++++.++++ ...+.|.+|-
T Consensus 11 k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~ 90 (255)
T PRK05717 11 RVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQFGRLDALVC 90 (255)
T ss_pred CEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 4566776 588999999999999999999998876655432 22 355778999998776442 1124677765
Q ss_pred ec
Q 001051 1080 TL 1081 (1173)
Q Consensus 1080 ~t 1081 (1173)
..
T Consensus 91 ~a 92 (255)
T PRK05717 91 NA 92 (255)
T ss_pred CC
Confidence 44
No 413
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=75.96 E-value=16 Score=43.01 Aligned_cols=94 Identities=29% Similarity=0.362 Sum_probs=51.2
Q ss_pred HHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 001051 270 LLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEATQRVND 349 (1173)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~a~~~~~~~m~~ae~av~~e~e~~~~~~~ 349 (1173)
|..+..++.+-|..|...+.+|.+-+...+++-+++..=++.+++.+..+.+-|+.+ + .-++++=..-=||-+.++.
T Consensus 10 L~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~-~--~~~~ei~~~~~~a~~~L~~ 86 (344)
T PF12777_consen 10 LKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEA-E--KQAKEIEEIKEEAEEELAE 86 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-H--HHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHH
Confidence 444555555555666666555555555555555555444444444443332222222 1 1122222222356677888
Q ss_pred HHHHHHHHHHhhcCCCC
Q 001051 350 AEIALQRAEKSLSNSSV 366 (1173)
Q Consensus 350 ~~~~~~~~~~~~~~~~~ 366 (1173)
|+=+|..|++.+++++.
T Consensus 87 a~P~L~~A~~al~~l~k 103 (344)
T PF12777_consen 87 AEPALEEAQEALKSLDK 103 (344)
T ss_dssp HHHHHHHHHHHHHCS-H
T ss_pred HHHHHHHHHHHHHhCCH
Confidence 99999999999999984
No 414
>PHA02557 22 prohead core protein; Provisional
Probab=75.95 E-value=1.5e+02 Score=33.86 Aligned_cols=59 Identities=19% Similarity=0.248 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001051 277 IKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQ 335 (1173)
Q Consensus 277 ~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~a~~~~~~~m~~ae~ 335 (1173)
|-+.+..|.+++.++.++-++.-+|++.++.+..-.--+..-..-+|-..--++.|+|.
T Consensus 143 V~em~~~L~E~e~~~~~l~~en~~l~e~i~~~~r~~i~~e~t~gLtdsQkeKv~~L~Eg 201 (271)
T PHA02557 143 VAEMEEELDEMEEELNELFEENVALEEYINEVKREVILSEVTKDLTESQKEKVASLAEG 201 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHhc
Confidence 45567888888888888888888888887777666666666666677776777777774
No 415
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=75.86 E-value=13 Score=42.95 Aligned_cols=32 Identities=28% Similarity=0.241 Sum_probs=30.0
Q ss_pred cccccCCCccHHHHHHHHHhCCCCeEEecCCc
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRS 1042 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~ 1042 (1173)
++.|+|.|.+|..++..|...|++|+++++++
T Consensus 6 ~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 6 TIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 58899999999999999999999999999885
No 416
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=75.85 E-value=1.8e+02 Score=34.78 Aligned_cols=67 Identities=15% Similarity=0.183 Sum_probs=39.8
Q ss_pred HHHHHHHhhcCChhHHHhchhhHHHHHHHHHHHHHHHHHHHHH-H--HhCCChHHHHHHhhccccCcHHH
Q 001051 662 VFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAH-F--VSGLPGPASIVIGNGLALSSTAV 728 (1173)
Q Consensus 662 ~~LLF~aGLEldl~~Lrr~~k~il~La~~~vllt~~~vgll~~-~--llGls~~~ALlLGaiLS~TSpaV 728 (1173)
.++++-+|-=+|+.-+..+.+..+.-+..++-+-....+.... + ..|++...|.-+|.+-.+=.|..
T Consensus 138 ~LIF~GIGAMtDFgpLlanP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTs 207 (433)
T PRK15475 138 LVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTA 207 (433)
T ss_pred HHHHHhccHHhcchHHhhCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchH
Confidence 3444557788899999999887665555554332211111111 1 13788888888887766544443
No 417
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.80 E-value=3.5 Score=44.63 Aligned_cols=73 Identities=12% Similarity=0.134 Sum_probs=53.8
Q ss_pred ccccccCC-CccHHHHHHHHHhCCCCeEEecCCchHHHhh----hhC-CCCEEEecCCCHHHHhhcC------ccccCEE
Q 001051 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIG----RAL-DLPVYFGDAGSREVLHKVG------AERACAA 1077 (1173)
Q Consensus 1010 ~hvIIiG~-G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l----~~~-g~~vi~GDasd~e~Le~ag------I~~A~~V 1077 (1173)
+.++|.|. |.+|..+++.|.+.|++|++++++++..+.+ ... +...+.+|.++++.++++- ....+.+
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~i 85 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAIDGL 85 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 45667665 7799999999999999999999998876544 222 4577889999998776531 2235777
Q ss_pred EEecC
Q 001051 1078 AITLD 1082 (1173)
Q Consensus 1078 Vi~t~ 1082 (1173)
+....
T Consensus 86 i~~ag 90 (238)
T PRK05786 86 VVTVG 90 (238)
T ss_pred EEcCC
Confidence 76664
No 418
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=75.60 E-value=1.2e+02 Score=38.14 Aligned_cols=146 Identities=21% Similarity=0.273 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHhhhhhHHHHH-----HHH-------------HHHHHHhchhHHHHHHHhhhHhHHHHHHHHh
Q 001051 150 TDELRELLMNAMKELEVAQLNSTMFEEK-----AQR-------------ISEAAIALKDEAANAWNNVNVTLDMVHEIVN 211 (1173)
Q Consensus 150 ~~~~~~~l~~~~~~~e~a~~~~~~~e~~-----~~~-------------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (1173)
.+.|||-|+.+..+++..+-..+++-+. ++| .++..+.|.|... +|..-.+-.+-......
T Consensus 285 ~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l-~lke~~~q~~qEk~~l~ 363 (546)
T PF07888_consen 285 NEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASL-ELKEGRSQWAQEKQALQ 363 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHH
Q 001051 212 EECIAK-EAVHKATMALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETE 290 (1173)
Q Consensus 212 ~e~~a~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (1173)
.+.++. +-+++-..-+.+++-.+|-...--+.. +.++.+|- +.-+--+.|.+--|.+.+.-
T Consensus 364 ~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL---------------~~ql~ke~---D~n~vqlsE~~rel~Elks~ 425 (546)
T PF07888_consen 364 HSAEADKDEIEKLSRELQMLEEHLQEERMERQKL---------------EKQLGKEK---DCNRVQLSENRRELQELKSS 425 (546)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHhh---hhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHH
Q 001051 291 LRRLQSKKEELQKEVDRLNEVAEK 314 (1173)
Q Consensus 291 l~~~~~~~~~~q~~~~~~~~~~~~ 314 (1173)
||-+|..|++||.|-.-|-+-.++
T Consensus 426 lrv~qkEKEql~~EkQeL~~yi~~ 449 (546)
T PF07888_consen 426 LRVAQKEKEQLQEEKQELLEYIER 449 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 419
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=75.59 E-value=4.2 Score=44.37 Aligned_cols=72 Identities=17% Similarity=0.044 Sum_probs=51.7
Q ss_pred ccccccCC-CccHHHHHHHHHhCCCCeEEecCCch--HHHhhhhCC--CCEEEecCCCHHHHhhc------CccccCEEE
Q 001051 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSD--RVAIGRALD--LPVYFGDAGSREVLHKV------GAERACAAA 1078 (1173)
Q Consensus 1010 ~hvIIiG~-G~~G~~Ia~~L~~~gi~VvVID~D~e--~ve~l~~~g--~~vi~GDasd~e~Le~a------gI~~A~~VV 1078 (1173)
+.++|.|. +.+|..+++.|.++|+.|+++++++. ..+..++.+ ..++.+|.++++.++++ .....|.+|
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~li 85 (248)
T TIGR01832 6 KVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFGHIDILV 85 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 45677775 78999999999999999999998752 223333333 56788999999887632 123577777
Q ss_pred Eec
Q 001051 1079 ITL 1081 (1173)
Q Consensus 1079 i~t 1081 (1173)
-..
T Consensus 86 ~~a 88 (248)
T TIGR01832 86 NNA 88 (248)
T ss_pred ECC
Confidence 654
No 420
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=75.56 E-value=74 Score=40.13 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHhhh
Q 001051 227 LSLAEARLQVAIESLQD 243 (1173)
Q Consensus 227 ~~~a~~~~~~~~~~~~~ 243 (1173)
++-+...++-+...+..
T Consensus 275 l~~~~~~l~d~~~~l~~ 291 (563)
T TIGR00634 275 VGNALTEVEEATRELQN 291 (563)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444433
No 421
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=75.47 E-value=6.2 Score=46.35 Aligned_cols=68 Identities=19% Similarity=0.124 Sum_probs=49.3
Q ss_pred ccccccCCCccHHHHHHHHHhCCCCeEEecCCch-HHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcc
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSD-RVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e-~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~ 1086 (1173)
+.+.|+|+|..|..+++.|...|++|++.+++.. ..+.+++.|+.+. +..+. ++++|.|++++++...
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~----s~~ea-----a~~ADVVvLaVPd~~~ 86 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL----TVAEA-----AKWADVIMILLPDEVQ 86 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC----CHHHH-----HhcCCEEEEcCCHHHH
Confidence 3478999999999999999999999998777644 4445555666431 11222 3468999999998644
No 422
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=75.42 E-value=4 Score=49.35 Aligned_cols=72 Identities=17% Similarity=0.119 Sum_probs=53.2
Q ss_pred ccccccCCCccHHHHHHHHHhCC-CCeEEecCCchHHHhh-hhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcch
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERL-IPFVALDVRSDRVAIG-RALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~g-i~VvVID~D~e~ve~l-~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~N 1087 (1173)
.+++|+|.|.+|..+++.|...| .+++++++++++.+.+ +..|...+. .+.+.+ .+.++|.||.+|+.+..-
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~-----~~~l~~-~l~~aDvVi~aT~s~~~i 254 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVK-----FEDLEE-YLAEADIVISSTGAPHPI 254 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEee-----HHHHHH-HHhhCCEEEECCCCCCce
Confidence 57899999999999999999999 6899999999887655 333443332 123332 235799999999877543
No 423
>PRK05875 short chain dehydrogenase; Provisional
Probab=75.40 E-value=3.4 Score=45.99 Aligned_cols=73 Identities=11% Similarity=0.065 Sum_probs=53.6
Q ss_pred ccccccCC-CccHHHHHHHHHhCCCCeEEecCCchHHHhhhh--------CCCCEEEecCCCHHHHhhcC------cccc
Q 001051 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA--------LDLPVYFGDAGSREVLHKVG------AERA 1074 (1173)
Q Consensus 1010 ~hvIIiG~-G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~--------~g~~vi~GDasd~e~Le~ag------I~~A 1074 (1173)
+.++|.|. |.+|..+++.|.++|++|++++++++..+...+ ....++.+|.++++.++++- ....
T Consensus 8 k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~ 87 (276)
T PRK05875 8 RTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWHGRL 87 (276)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 56788885 899999999999999999999998776543321 13457789999998776541 1256
Q ss_pred CEEEEecC
Q 001051 1075 CAAAITLD 1082 (1173)
Q Consensus 1075 ~~VVi~t~ 1082 (1173)
|.+|-...
T Consensus 88 d~li~~ag 95 (276)
T PRK05875 88 HGVVHCAG 95 (276)
T ss_pred CEEEECCC
Confidence 77776553
No 424
>PRK12472 hypothetical protein; Provisional
Probab=75.37 E-value=54 Score=40.22 Aligned_cols=100 Identities=22% Similarity=0.215 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCcccccCCCCcchhhHHHHHhhhHHHHHHHHHhhHHHHHH
Q 001051 214 CIAKEAVHKATMALSLAEARLQVAIESLQDVKQEDDYPEGSTEDDAKSDGKEEDGLLLAAENDIKECQANLANCETELRR 293 (1173)
Q Consensus 214 ~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 293 (1173)
..++-.+.++..+..-|+++|..|-..|++++- |. +-. +
T Consensus 221 ~~~~~~l~~~e~~~~~a~~~l~~adk~l~~a~~---------------d~-----~~~---------------------~ 259 (508)
T PRK12472 221 APLKASLRKLERAKARADAELKRADKALAAAKT---------------DE-----AKA---------------------R 259 (508)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------------ch-----hhh---------------------h
Confidence 344555566666777788888888888777541 00 111 1
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHH
Q 001051 294 LQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQAVAFEIEATQRVNDAEIAL 354 (1173)
Q Consensus 294 ~~~~~~~~q~~~~~~~~~~~~~~~~~~~a~~~~~~~m~~ae~av~~e~e~~~~~~~~~~~~ 354 (1173)
.+.+|.++-.++...+..++.|+.+|...+..++..-..|..|=+.--|++.-.+||+.++
T Consensus 260 a~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~a~~a~l~~ 320 (508)
T PRK12472 260 AEERQQKAAQQAAEAATQLDTAKADAEAKRAAAAATKEAAKAAAAKKAETAKAATDAKLAL 320 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 1134555555666667777788888888888888877788887777778888888887765
No 425
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=75.31 E-value=2.3e+02 Score=35.61 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=15.6
Q ss_pred CCCccchhhHHHHHHHHHHhhchhHHHH
Q 001051 504 DGTESTQASIFQGLMEYARKQLPKLVLG 531 (1173)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 531 (1173)
|| -..|+++ .-+++.+++++-.-+.-
T Consensus 270 dg-rihp~ri-ee~~~~~~~~~~~~i~~ 295 (514)
T TIGR03319 270 DG-RIHPARI-EEMVEKATKEVDNAIRE 295 (514)
T ss_pred cC-CCCHHHH-HHHHHHHHHHHHHHHHH
Confidence 45 3667776 45666776666655543
No 426
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=75.31 E-value=7.2 Score=48.41 Aligned_cols=39 Identities=23% Similarity=0.297 Sum_probs=35.9
Q ss_pred ccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhh
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIG 1048 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l 1048 (1173)
+++-|+|.|..|..|+..|...|++|++.|.+++.+++.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~ 46 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAA 46 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHH
Confidence 468899999999999999999999999999999988773
No 427
>PRK03612 spermidine synthase; Provisional
Probab=75.28 E-value=2.3e+02 Score=35.57 Aligned_cols=108 Identities=18% Similarity=0.135 Sum_probs=66.3
Q ss_pred cccccccCCCccHHHHHHHHHhCC--CCeEEecCCchHHHhhhh--------------CCCCEEEecCCCHHHHhhcCcc
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERL--IPFVALDVRSDRVAIGRA--------------LDLPVYFGDAGSREVLHKVGAE 1072 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~g--i~VvVID~D~e~ve~l~~--------------~g~~vi~GDasd~e~Le~agI~ 1072 (1173)
.++++++|.|.-+ +++.+.+++ .++++||.|++.++.+++ ...++++||+.+ .+++. -+
T Consensus 298 ~~rVL~IG~G~G~--~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~--~l~~~-~~ 372 (521)
T PRK03612 298 PRRVLVLGGGDGL--ALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFN--WLRKL-AE 372 (521)
T ss_pred CCeEEEEcCCccH--HHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHH--HHHhC-CC
Confidence 4568888888543 334444443 589999999999988765 235678898863 34443 25
Q ss_pred ccCEEEEecCCCcc---h-H----HHHHHHHhhCCCceEEEEecC----h----hhHHHHHHCCC
Q 001051 1073 RACAAAITLDTPGA---N-Y----RTVWALSKYFPNVKTFVRAHD----I----DHGLNLEKAGA 1121 (1173)
Q Consensus 1073 ~A~~VVi~t~Dd~~---N-i----~iv~~ar~l~p~~~IIara~d----~----e~~~~L~~aGA 1121 (1173)
+.|.|++-.+|+.. + + ......+.+.|+-.++....+ . +-.+.+++.|-
T Consensus 373 ~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf 437 (521)
T PRK03612 373 KFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGL 437 (521)
T ss_pred CCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCC
Confidence 89999988776531 1 1 223445566777555553322 1 23344566666
No 428
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.27 E-value=5.8 Score=44.09 Aligned_cols=71 Identities=10% Similarity=-0.095 Sum_probs=50.0
Q ss_pred ccccccCCC---ccHHHHHHHHHhCCCCeEEecCCchH---HHhhhhC--CCCEEEecCCCHHHHhhc------CccccC
Q 001051 1010 DHIILCGFG---RVGQIIAQLLSERLIPFVALDVRSDR---VAIGRAL--DLPVYFGDAGSREVLHKV------GAERAC 1075 (1173)
Q Consensus 1010 ~hvIIiG~G---~~G~~Ia~~L~~~gi~VvVID~D~e~---ve~l~~~--g~~vi~GDasd~e~Le~a------gI~~A~ 1075 (1173)
+.++|.|.+ -+|..+++.|.++|.+|++++++++. .+.+.+. ...++..|.++++..+++ .....|
T Consensus 11 k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ld 90 (258)
T PRK07533 11 KRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWGRLD 90 (258)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcCCCC
Confidence 567888875 69999999999999999999988543 3333222 234678999999877543 113456
Q ss_pred EEEEe
Q 001051 1076 AAAIT 1080 (1173)
Q Consensus 1076 ~VVi~ 1080 (1173)
.+|..
T Consensus 91 ~lv~n 95 (258)
T PRK07533 91 FLLHS 95 (258)
T ss_pred EEEEc
Confidence 66644
No 429
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=75.18 E-value=2.4 Score=50.09 Aligned_cols=62 Identities=19% Similarity=0.208 Sum_probs=44.5
Q ss_pred cccccCCCccHHHHHHHHHhCCCCeEEecCCchH-HHhhhhCCCCEEEecCCCHHHHhhcCcc
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDR-VAIGRALDLPVYFGDAGSREVLHKVGAE 1072 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~-ve~l~~~g~~vi~GDasd~e~Le~agI~ 1072 (1173)
.++|+|.|..|..+|-.|.+.|++|+++|..+.. .......|...+.-.+...+.|+++|+.
T Consensus 5 dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~ 67 (384)
T PRK08849 5 DIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAW 67 (384)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCc
Confidence 6899999999999999999999999999987521 1111112344444455566777777754
No 430
>PLN02602 lactate dehydrogenase
Probab=75.15 E-value=19 Score=42.74 Aligned_cols=133 Identities=17% Similarity=0.196 Sum_probs=81.6
Q ss_pred ccccccCCCccHHHHHHHHHhCCC--CeEEecCCchHHH----hhhhC----CCCEEEecCCCHHHHhhcCccccCEEEE
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLI--PFVALDVRSDRVA----IGRAL----DLPVYFGDAGSREVLHKVGAERACAAAI 1079 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi--~VvVID~D~e~ve----~l~~~----g~~vi~GDasd~e~Le~agI~~A~~VVi 1079 (1173)
.++.|+|.|.+|..++-.|...+. +++++|.+++..+ .+.+. +...+.++. + . ..+.+||.||+
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~-d---y--~~~~daDiVVi 111 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILAST-D---Y--AVTAGSDLCIV 111 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCC-C---H--HHhCCCCEEEE
Confidence 489999999999999999987776 6999999887553 22221 112333321 1 1 23678999999
Q ss_pred ecCCC-----------cchH----HHHHHHHhhCCCceEEEEecChhh--HHH-HHHCC--CCeeecC-CcHHHHHHHHH
Q 001051 1080 TLDTP-----------GANY----RTVWALSKYFPNVKTFVRAHDIDH--GLN-LEKAG--ATAVVPE-TLEPSLQLAAA 1138 (1173)
Q Consensus 1080 ~t~Dd-----------~~Ni----~iv~~ar~l~p~~~IIara~d~e~--~~~-L~~aG--Ad~VI~p-~~~aa~~LA~~ 1138 (1173)
+.+.+ ..|. .++..+++..|+..++.-+ ++.+ ... .+..| ..+||-. +.+-..++.+.
T Consensus 112 tAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt-NPvdv~t~~~~k~sg~p~~rviG~gt~LDs~R~r~~ 190 (350)
T PLN02602 112 TAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS-NPVDVLTYVAWKLSGFPANRVIGSGTNLDSSRFRFL 190 (350)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec-CchHHHHHHHHHHhCCCHHHEEeecchHHHHHHHHH
Confidence 86653 2343 3555777788886554444 5432 222 24455 4566644 34445566666
Q ss_pred HHHhcCCCHHH
Q 001051 1139 VLAQAKLPASE 1149 (1173)
Q Consensus 1139 vl~~l~~~~~e 1149 (1173)
+-..++++..+
T Consensus 191 lA~~l~v~~~~ 201 (350)
T PLN02602 191 IADHLDVNAQD 201 (350)
T ss_pred HHHHhCCCccc
Confidence 66666665543
No 431
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=75.10 E-value=4.5 Score=47.45 Aligned_cols=106 Identities=17% Similarity=0.179 Sum_probs=67.6
Q ss_pred ccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchHHHH
Q 001051 1012 IILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTV 1091 (1173)
Q Consensus 1012 vIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni~iv 1091 (1173)
+.|+|.|..++.+++.+.+.|++++++|.+++.... ...-..+.+|..|++.+.++- +.++.+ +.+.+..+....
T Consensus 2 igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~--~~ad~~~~~~~~d~~~i~~~a-~~~dvi--t~e~e~i~~~~l 76 (352)
T TIGR01161 2 VGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAV--QVADHVVLAPFFDPAAIRELA-ESCDVI--TFEFEHVDVEAL 76 (352)
T ss_pred EEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChh--HhCceeEeCCCCCHHHHHHHH-hhCCEE--EeCcCcCCHHHH
Confidence 468999999999999999999999999998754321 112235678999999887753 345543 444433333333
Q ss_pred HHHHhh----CCCceEEEEecChh-hHHHHHHCCCC
Q 001051 1092 WALSKY----FPNVKTFVRAHDID-HGLNLEKAGAT 1122 (1173)
Q Consensus 1092 ~~ar~l----~p~~~IIara~d~e-~~~~L~~aGAd 1122 (1173)
..+.+. .|+...+..+.|.. ..+.|++.|+.
T Consensus 77 ~~l~~~g~~~~p~~~~~~~~~dK~~~k~~l~~~gip 112 (352)
T TIGR01161 77 EKLEARGVKLFPSPDALAIIQDRLTQKQFLQKLGLP 112 (352)
T ss_pred HHHHhCCCeECCCHHHHHHhcCHHHHHHHHHHcCCC
Confidence 334333 24444444555543 44456777766
No 432
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.95 E-value=4.6 Score=44.73 Aligned_cols=71 Identities=10% Similarity=0.020 Sum_probs=50.6
Q ss_pred ccccccCCC---ccHHHHHHHHHhCCCCeEEecCCchHHHhhh---hCCCCEEEecCCCHHHHhhc------CccccCEE
Q 001051 1010 DHIILCGFG---RVGQIIAQLLSERLIPFVALDVRSDRVAIGR---ALDLPVYFGDAGSREVLHKV------GAERACAA 1077 (1173)
Q Consensus 1010 ~hvIIiG~G---~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~---~~g~~vi~GDasd~e~Le~a------gI~~A~~V 1077 (1173)
+.++|.|.+ .+|+.+++.|.++|.+|++.+++....+.+. ......+..|.++++..+++ ...+.|.+
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~l 87 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLVDEEDLLVECDVASDESIERAFATIKERVGKIDGI 87 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhccCceeEEeCCCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 467888875 7999999999999999999988743322222 22456788999998876543 12356776
Q ss_pred EEe
Q 001051 1078 AIT 1080 (1173)
Q Consensus 1078 Vi~ 1080 (1173)
|-.
T Consensus 88 v~n 90 (252)
T PRK06079 88 VHA 90 (252)
T ss_pred EEc
Confidence 653
No 433
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=74.88 E-value=2.1 Score=39.10 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=31.1
Q ss_pred cccccCCCccHHHHHHHHHhCCCCeEEecCCchH
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDR 1044 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ 1044 (1173)
+++|+|.|..|..+|..|.+.|.+|++|++++.-
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~ 34 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL 34 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence 4789999999999999999999999999988654
No 434
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=74.84 E-value=5 Score=48.81 Aligned_cols=74 Identities=12% Similarity=0.111 Sum_probs=53.9
Q ss_pred cccccccCCCccHHHHHHHHHhCCCCeEEecCCchH---------------------HHhhhhCCCCEEEecCCCHH-HH
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDR---------------------VAIGRALDLPVYFGDAGSRE-VL 1066 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~---------------------ve~l~~~g~~vi~GDasd~e-~L 1066 (1173)
...++|+|.|..|...+..|.+.|++|+++|.++.. .+.+++.|+.++.|...... ++
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v~~ 212 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVGKTATL 212 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccCCcCCH
Confidence 467999999999999999999999999999975311 13456678888887544322 12
Q ss_pred hhcCccccCEEEEecCC
Q 001051 1067 HKVGAERACAAAITLDT 1083 (1173)
Q Consensus 1067 e~agI~~A~~VVi~t~D 1083 (1173)
... ...+|.||++++-
T Consensus 213 ~~~-~~~yd~viiAtGa 228 (449)
T TIGR01316 213 EEL-FSQYDAVFIGTGA 228 (449)
T ss_pred HHH-HhhCCEEEEeCCC
Confidence 221 1358999999984
No 435
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=74.74 E-value=6.2 Score=46.18 Aligned_cols=39 Identities=18% Similarity=0.049 Sum_probs=35.0
Q ss_pred ccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhh
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIG 1048 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l 1048 (1173)
+++.|+|.|.+|..++..+...|++|++.|.+++..+++
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~ 46 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAAL 46 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHH
Confidence 468899999999999999999999999999998876543
No 436
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=74.70 E-value=3.5 Score=52.64 Aligned_cols=68 Identities=15% Similarity=0.156 Sum_probs=51.0
Q ss_pred ccccccC-CCccHHHHHHHHHhC-CCCeEEecCCchHHHhh-hhCCCCEEEecCCCHHHH-hhcCccccCEEE
Q 001051 1010 DHIILCG-FGRVGQIIAQLLSER-LIPFVALDVRSDRVAIG-RALDLPVYFGDAGSREVL-HKVGAERACAAA 1078 (1173)
Q Consensus 1010 ~hvIIiG-~G~~G~~Ia~~L~~~-gi~VvVID~D~e~ve~l-~~~g~~vi~GDasd~e~L-e~agI~~A~~VV 1078 (1173)
.+++|.| .|-+|..+++.|.+. |++|+++|+++...... ...+++++.||.++...+ +++ ++++|+||
T Consensus 316 ~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~~~~~~~~~~~~gDl~d~~~~l~~~-l~~~D~Vi 387 (660)
T PRK08125 316 TRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISRFLGHPRFHFVEGDISIHSEWIEYH-IKKCDVVL 387 (660)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhhhcCCCceEEEeccccCcHHHHHHH-hcCCCEEE
Confidence 3588888 599999999999985 79999999987654433 234688899999986553 432 34678877
No 437
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=74.64 E-value=37 Score=37.18 Aligned_cols=107 Identities=10% Similarity=0.129 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcC--CCchHHHHHHHHHhhcccccccc----cCchhHHHHHHHHHH-------HHHHHHhh
Q 001051 604 FDVLWLLLASVIFVPIFQKIP--GGSPVLGYLAAGILIGPYGLSII----RHVHGTKAIAEFGVV-------FLLFNIGL 670 (1173)
Q Consensus 604 l~l~lLLl~A~ilg~L~~Rl~--~lP~IvG~LLaGILLGP~gLgli----~~~~~~~~LaeLGL~-------~LLF~aGL 670 (1173)
..+.++=+.-++..++.+|++ |++.----|+.|+++...+ |.. ....++..++.+|+. |-.-.-..
T Consensus 16 ~aFa~vG~~m~~s~~lS~~lT~Gr~hgSAIAI~lGL~lAy~g-G~~TgG~kGlaDi~lfsGiglmGGaMlRDfAIvaTAf 94 (254)
T TIGR00808 16 TAFAVVGLMMYVSHLLSKYLTKGKLHGSAIAITMGLVLAYVG-GVYTGGEKGLADIAIFGGFGLMGGAMLRDLAIVATAF 94 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHc-ccccCCccccchhhhhcchhhhhhHHHHHHHHHHHhh
Confidence 333333333444445555542 5677777788888887542 111 112223333333321 11234567
Q ss_pred cCChhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHhCCChH
Q 001051 671 ELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHFVSGLPGP 712 (1173)
Q Consensus 671 Eldl~~Lrr~~k~il~La~~~vllt~~~vgll~~~llGls~~ 712 (1173)
+.|++++|+.+..-..--+++++++++ ++....+.+|+.-+
T Consensus 95 ~v~~~e~kkaG~~G~vsL~~G~v~~F~-~Ga~vA~afGY~Da 135 (254)
T TIGR00808 95 EVDVKEVKKAGKVGMVALLLGCVIPFV-IGAMVAWAFGYRDA 135 (254)
T ss_pred cCcHHHHHHcchHHHHHHHHHHHHHHH-HHHHHHHHHcCCCc
Confidence 889999999988766666677777765 55555567787543
No 438
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=74.60 E-value=26 Score=40.89 Aligned_cols=133 Identities=18% Similarity=0.158 Sum_probs=79.4
Q ss_pred cccccccCCCccHHHHHHHHHhCCC--CeEEecCCchHHH----hhhhC----CCCEEEecCCCHHHHhhcCccccCEEE
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLI--PFVALDVRSDRVA----IGRAL----DLPVYFGDAGSREVLHKVGAERACAAA 1078 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi--~VvVID~D~e~ve----~l~~~----g~~vi~GDasd~e~Le~agI~~A~~VV 1078 (1173)
+..+.|+|.|.+|..++..|...|. +++++|.+++..+ .+.+. ...-+.+- .+.+ .+.+||.||
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~-~dy~-----~~~~adivv 76 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEAD-KDYS-----VTANSKVVI 76 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEEC-CCHH-----HhCCCCEEE
Confidence 3478999999999999999987776 6999999887553 22221 11123321 1222 256899999
Q ss_pred EecCCC-----------cchHH----HHHHHHhhCCCceEEEEecChh--hHHHHHH-CCC--CeeecC-CcHHHHHHHH
Q 001051 1079 ITLDTP-----------GANYR----TVWALSKYFPNVKTFVRAHDID--HGLNLEK-AGA--TAVVPE-TLEPSLQLAA 1137 (1173)
Q Consensus 1079 i~t~Dd-----------~~Ni~----iv~~ar~l~p~~~IIara~d~e--~~~~L~~-aGA--d~VI~p-~~~aa~~LA~ 1137 (1173)
++.+.+ ..|.. ++..+++..|+..+++.+ ++. ....+.+ .|. .+|+-. +.+-..++-+
T Consensus 77 itaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs-NP~d~~t~~~~k~sg~p~~~viG~gt~Ld~~R~~~ 155 (312)
T cd05293 77 VTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS-NPVDIMTYVAWKLSGLPKHRVIGSGCNLDSARFRY 155 (312)
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc-ChHHHHHHHHHHHhCCCHHHEEecCchHHHHHHHH
Confidence 977653 23433 445777788886555544 443 3333333 344 366644 4454555666
Q ss_pred HHHHhcCCCHH
Q 001051 1138 AVLAQAKLPAS 1148 (1173)
Q Consensus 1138 ~vl~~l~~~~~ 1148 (1173)
.+-..++++..
T Consensus 156 ~la~~l~v~~~ 166 (312)
T cd05293 156 LIAERLGVAPS 166 (312)
T ss_pred HHHHHhCCChh
Confidence 66665555543
No 439
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=74.45 E-value=5.3 Score=49.49 Aligned_cols=38 Identities=24% Similarity=0.342 Sum_probs=35.0
Q ss_pred cccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhh
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIG 1048 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l 1048 (1173)
++.|+|.|.+|..|+..+...|++|+++|.+++.++++
T Consensus 7 kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~ 44 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARA 44 (503)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHH
Confidence 58899999999999999999999999999999988653
No 440
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=74.44 E-value=2.8 Score=49.77 Aligned_cols=58 Identities=14% Similarity=0.146 Sum_probs=45.5
Q ss_pred ccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCc
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGA 1071 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI 1071 (1173)
..|+|+|.|..|..+|-.|.+.|++|+++|+.+... ...| ..+.-.+...+.|+++|+
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~---~~~~-r~~~l~~~~~~~L~~lG~ 60 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERAPREL---LERG-RGIALSPNALRALERLGL 60 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccCcccc---ccCc-eeeeecHhHHHHHHHcCC
Confidence 468999999999999999999999999999983222 2223 455556667777888887
No 441
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=74.42 E-value=28 Score=40.85 Aligned_cols=50 Identities=20% Similarity=0.184 Sum_probs=30.6
Q ss_pred HHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001051 194 NAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLAEARLQVAIESLQD 243 (1173)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~ 243 (1173)
..+......++..+....+-.+.++.+.++...+.-|+++++.+.+-+..
T Consensus 128 ~~l~~a~~~~~R~~~L~~~g~vS~~~~~~a~~~~~~a~~~l~~a~~~~~~ 177 (346)
T PRK10476 128 ANAKLATRTLERLEPLLAKGYVSAQQVDQARTAQRDAEVSLNQALLQAQA 177 (346)
T ss_pred HHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445556666666666777777777777777676666666554444
No 442
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=74.39 E-value=3.6 Score=45.98 Aligned_cols=73 Identities=15% Similarity=0.093 Sum_probs=53.0
Q ss_pred ccccccCC-CccHHHHHHHHHhCCCCeEEecCCchHHHhh----hhCC--CCEEEecCCCHHHHhhcC------ccccCE
Q 001051 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIG----RALD--LPVYFGDAGSREVLHKVG------AERACA 1076 (1173)
Q Consensus 1010 ~hvIIiG~-G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l----~~~g--~~vi~GDasd~e~Le~ag------I~~A~~ 1076 (1173)
+.++|.|. +.+|..+++.|.++|++|++++++++..+.+ .+.+ ...+.+|.++++.+..+- ....|.
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~id~ 90 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFGPCDI 90 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 45677775 7899999999999999999999997765443 2223 456789999998765431 235777
Q ss_pred EEEecC
Q 001051 1077 AAITLD 1082 (1173)
Q Consensus 1077 VVi~t~ 1082 (1173)
+|-..+
T Consensus 91 li~~ag 96 (278)
T PRK08277 91 LINGAG 96 (278)
T ss_pred EEECCC
Confidence 776543
No 443
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=74.34 E-value=5.5 Score=48.31 Aligned_cols=113 Identities=20% Similarity=0.111 Sum_probs=68.2
Q ss_pred ccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHh-hhhCCCCEEEec------CCCHHH-HhhcCccccCEEEEec
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAI-GRALDLPVYFGD------AGSREV-LHKVGAERACAAAITL 1081 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~-l~~~g~~vi~GD------asd~e~-Le~agI~~A~~VVi~t 1081 (1173)
++++|+|.|..+..+++.+++.|+++++++.+++.... .+-.+..++.|+ ..|.+. ++-+.-.+.|+|+...
T Consensus 3 k~iLi~g~g~~a~~i~~aa~~~G~~vv~~~~~~d~~a~~~~~ad~~~~~~~~~~~~~y~d~~~l~~~a~~~~id~I~p~~ 82 (451)
T PRK08591 3 DKILIANRGEIALRIIRACKELGIKTVAVHSTADRDALHVQLADEAVCIGPAPSKKSYLNIPAIISAAEITGADAIHPGY 82 (451)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEcChhhccCCCHhHCCEEEEeCCCCcccccCCHHHHHHHHHHhCCCEEEECC
Confidence 57899999999999999999999999999776553211 111122222343 234333 3344555788877766
Q ss_pred CCCcchHHHHHHHHhhC-----CCceEEEEecChh-hHHHHHHCCCC
Q 001051 1082 DTPGANYRTVWALSKYF-----PNVKTFVRAHDID-HGLNLEKAGAT 1122 (1173)
Q Consensus 1082 ~Dd~~Ni~iv~~ar~l~-----p~~~IIara~d~e-~~~~L~~aGAd 1122 (1173)
+....+......+.+++ |+...+..+.|.. ..+.+++.|+.
T Consensus 83 ~~~~e~~~~~~~~e~~gi~~~g~~~~~~~~~~DK~~~r~~l~~~gIp 129 (451)
T PRK08591 83 GFLSENADFAEICEDSGFTFIGPSAETIRLMGDKVTAKATMKKAGVP 129 (451)
T ss_pred CccccCHHHHHHHHHCCCceECcCHHHHHHhcCHHHHHHHHHHcCCC
Confidence 44344444444445443 3334444555553 44556788876
No 444
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=74.28 E-value=86 Score=34.86 Aligned_cols=88 Identities=22% Similarity=0.101 Sum_probs=55.8
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhhcccCCcchhhHHHHHHHhhccchhhhHHHHHHHHHH
Q 001051 892 KLLLSNFPVITGALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLLVGI 971 (1173)
Q Consensus 892 ~~L~~~~~lilllvvllvv~K~l~v~l~~~l~g~~~real~lGl~LaprGevalvla~lAl~~giis~el~silvlvVvl 971 (1173)
+.+..+|..++..+.+..+.-++..+..++++|.+.. +...+.||+...-+...+....|....-...+++++-++
T Consensus 71 ~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~----~~~Sl~pkSVTtpiAi~is~~iGG~~sLta~~VvitGi~ 146 (215)
T PF04172_consen 71 RLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPE----IILSLAPKSVTTPIAIEISEQIGGIPSLTAVFVVITGIL 146 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHHHHHhhHHHHHHHHHHhCChHHHHHHHHHHHhhH
Confidence 4445555555555555555666777778888888642 233467898887777777777776554444455555566
Q ss_pred HHHHHHHHHhhh
Q 001051 972 SMALTPWLAAGG 983 (1173)
Q Consensus 972 S~iItPiL~~~~ 983 (1173)
..+++|.+.++.
T Consensus 147 Ga~~g~~llk~~ 158 (215)
T PF04172_consen 147 GAVLGPPLLKLL 158 (215)
T ss_pred HHHhHHHHHhHc
Confidence 677777777653
No 445
>PRK07576 short chain dehydrogenase; Provisional
Probab=73.97 E-value=4 Score=45.43 Aligned_cols=71 Identities=8% Similarity=-0.020 Sum_probs=51.5
Q ss_pred ccccccCC-CccHHHHHHHHHhCCCCeEEecCCchHHHhh----hhC--CCCEEEecCCCHHHHhhcC------ccccCE
Q 001051 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIG----RAL--DLPVYFGDAGSREVLHKVG------AERACA 1076 (1173)
Q Consensus 1010 ~hvIIiG~-G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l----~~~--g~~vi~GDasd~e~Le~ag------I~~A~~ 1076 (1173)
++++|.|. |.+|..+++.|.+.|+.|++++++++..+.. ... ...++.+|.++++.++++- ....|.
T Consensus 10 k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~iD~ 89 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGPIDV 89 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 46777765 7899999999999999999999987765433 222 2356789999988776531 124677
Q ss_pred EEEe
Q 001051 1077 AAIT 1080 (1173)
Q Consensus 1077 VVi~ 1080 (1173)
+|..
T Consensus 90 vi~~ 93 (264)
T PRK07576 90 LVSG 93 (264)
T ss_pred EEEC
Confidence 7644
No 446
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=73.91 E-value=4.1 Score=46.48 Aligned_cols=66 Identities=23% Similarity=0.103 Sum_probs=50.8
Q ss_pred ccCCCccHHHHHHHHHhCC--CCeEEecCCchHHH--hhhhCCCC-EEEecCCCHHHHhhcCccccCEEEEe
Q 001051 1014 LCGFGRVGQIIAQLLSERL--IPFVALDVRSDRVA--IGRALDLP-VYFGDAGSREVLHKVGAERACAAAIT 1080 (1173)
Q Consensus 1014 IiG~G~~G~~Ia~~L~~~g--i~VvVID~D~e~ve--~l~~~g~~-vi~GDasd~e~Le~agI~~A~~VVi~ 1080 (1173)
.=|.|-+|..++++|.++| +.|.++|..+.... .....+.. ++.||.+|++.++++ +++++.|+=+
T Consensus 3 TGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a-~~g~d~V~H~ 73 (280)
T PF01073_consen 3 TGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEA-LEGVDVVFHT 73 (280)
T ss_pred EcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHH-hcCCceEEEe
Confidence 3478999999999999999 78999998765432 33444444 889999999999885 4567877765
No 447
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=73.91 E-value=8.5 Score=42.95 Aligned_cols=89 Identities=15% Similarity=0.074 Sum_probs=58.7
Q ss_pred cccccccCCCccHHHHHHHHHhCCC-CeEEecCCchHHH-----------------------hhhhCC--C--CEEEecC
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLI-PFVALDVRSDRVA-----------------------IGRALD--L--PVYFGDA 1060 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi-~VvVID~D~e~ve-----------------------~l~~~g--~--~vi~GDa 1060 (1173)
+.+++|+|.|-+|..+++.|...|+ +++++|.|.-... ++++.+ . ..+....
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~~i 90 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEEFL 90 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 4589999999999999999999998 8999998852211 111111 1 1223332
Q ss_pred CCHHHHhhcCccccCEEEEecCCCcchHHHHHHHHhhC
Q 001051 1061 GSREVLHKVGAERACAAAITLDTPGANYRTVWALSKYF 1098 (1173)
Q Consensus 1061 sd~e~Le~agI~~A~~VVi~t~Dd~~Ni~iv~~ar~l~ 1098 (1173)
+ ++.+...-..+.|+||.++++...-..+...+++.+
T Consensus 91 ~-~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ 127 (231)
T cd00755 91 T-PDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRK 127 (231)
T ss_pred C-HhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhC
Confidence 2 333333333468999999988776666666777653
No 448
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=73.83 E-value=7.5 Score=47.07 Aligned_cols=75 Identities=17% Similarity=0.135 Sum_probs=55.7
Q ss_pred ccccccCCCccHHHHHHHHHhCCCCeEEecCCchH--HHhhhh--CCCCEEEecCCCHHHHhhcCccccCEEEEecCCCc
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDR--VAIGRA--LDLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~--ve~l~~--~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~ 1085 (1173)
++++|+|.|..|..+++.|.++|+.|++.|.++.. .+++++ .|..++.|...+ ..+ .++|.||....-+.
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~-~~~-----~~~d~vv~spgi~~ 79 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKD-ALD-----NGFDILALSPGISE 79 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCH-HHH-----hCCCEEEECCCCCC
Confidence 47899999999999999999999999999987542 345554 377777776432 222 46789988887776
Q ss_pred chHHH
Q 001051 1086 ANYRT 1090 (1173)
Q Consensus 1086 ~Ni~i 1090 (1173)
.|-.+
T Consensus 80 ~~p~~ 84 (445)
T PRK04308 80 RQPDI 84 (445)
T ss_pred CCHHH
Confidence 66443
No 449
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=73.80 E-value=4.8 Score=46.83 Aligned_cols=73 Identities=18% Similarity=0.131 Sum_probs=51.9
Q ss_pred ccccccCC-CccHHHHHHHHHhCCCCeEEecCCchHHHh----hh-hCCCCEEEecCCCHHHHhhcCcc-ccCEEEEecC
Q 001051 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAI----GR-ALDLPVYFGDAGSREVLHKVGAE-RACAAAITLD 1082 (1173)
Q Consensus 1010 ~hvIIiG~-G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~----l~-~~g~~vi~GDasd~e~Le~agI~-~A~~VVi~t~ 1082 (1173)
++++|.|. |-+|..+++.|.+.|++|+++++++..... +. ......+.+|.++++.+.++--+ +.|.||-+..
T Consensus 5 k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vih~A~ 84 (349)
T TIGR02622 5 KKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVFHLAA 84 (349)
T ss_pred CEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEEECCc
Confidence 35777775 889999999999999999999988654322 11 12355789999999988764221 3577665543
No 450
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=73.72 E-value=12 Score=43.37 Aligned_cols=102 Identities=16% Similarity=0.043 Sum_probs=73.4
Q ss_pred cccccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEec---CC
Q 001051 1007 DLQDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITL---DT 1083 (1173)
Q Consensus 1007 ~lk~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t---~D 1083 (1173)
-.+.+++|+|+|-+|..-++...-.|-+|+++|.|.++.+.+.+....=+.--.+++..++++ +.++|.+|-+. +.
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~-v~~aDlvIgaVLIpga 244 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEA-VKKADLVIGAVLIPGA 244 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHH-hhhccEEEEEEEecCC
Confidence 346789999999999999999999999999999999999888665222234445777777764 56788887655 23
Q ss_pred CcchHHHHHHHHhhCCCceEEEEecC
Q 001051 1084 PGANYRTVWALSKYFPNVKTFVRAHD 1109 (1173)
Q Consensus 1084 d~~Ni~iv~~ar~l~p~~~IIara~d 1109 (1173)
....+..-.+++.+-|...||=.+-|
T Consensus 245 kaPkLvt~e~vk~MkpGsVivDVAiD 270 (371)
T COG0686 245 KAPKLVTREMVKQMKPGSVIVDVAID 270 (371)
T ss_pred CCceehhHHHHHhcCCCcEEEEEEEc
Confidence 33445555567888776555444433
No 451
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=73.68 E-value=16 Score=43.23 Aligned_cols=115 Identities=17% Similarity=0.148 Sum_probs=71.6
Q ss_pred cccccccCCCccHHHHHHHHHhCCC-CeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcch
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLI-PFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi-~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~N 1087 (1173)
+.+++|+|.|-.|..+++.|...|+ +++++|.|.-....+ +.++++.. ...| . ...
T Consensus 28 ~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL---~Rq~l~~~-------~diG------------~-~Ka 84 (355)
T PRK05597 28 DAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNL---HRQVIHST-------AGVG------------Q-PKA 84 (355)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEccccc---ccCcccCh-------hHCC------------C-hHH
Confidence 4589999999999999999999997 799999885333222 22222100 1111 1 123
Q ss_pred HHHHHHHHhhCCCceEEEEecChhhHHHHH-HCCCCeeecCC-cHHHHHHHHHHHHhcCCC
Q 001051 1088 YRTVWALSKYFPNVKTFVRAHDIDHGLNLE-KAGATAVVPET-LEPSLQLAAAVLAQAKLP 1146 (1173)
Q Consensus 1088 i~iv~~ar~l~p~~~IIara~d~e~~~~L~-~aGAd~VI~p~-~~aa~~LA~~vl~~l~~~ 1146 (1173)
..+...+++++|++++-+............ -.+.|.||.-. ....+.+.+.+....++|
T Consensus 85 ~~a~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip 145 (355)
T PRK05597 85 ESAREAMLALNPDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAAARLGIP 145 (355)
T ss_pred HHHHHHHHHHCCCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 346778899999988776544433221111 13789888653 344555666666666655
No 452
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=73.63 E-value=5.6 Score=48.71 Aligned_cols=115 Identities=18% Similarity=0.076 Sum_probs=69.8
Q ss_pred cccccccCCCccHHHHHHHHHhCCCCeEEecCCchHH-HhhhhCCCCEEEe------cCCCHHH-HhhcCccccCEEEEe
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRV-AIGRALDLPVYFG------DAGSREV-LHKVGAERACAAAIT 1080 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~v-e~l~~~g~~vi~G------Dasd~e~-Le~agI~~A~~VVi~ 1080 (1173)
-++++|+|.|..+..+++.+++.|++++++..+++.- -..+-.+..+..| |..|.+. ++-+.-.++|+|+..
T Consensus 5 ~~~vLi~~~geia~~ii~aa~~lG~~~v~~~s~~d~~~~~~~~aD~~~~i~p~~~~~~y~d~~~i~~~a~~~~~daI~pg 84 (467)
T PRK12833 5 IRKVLVANRGEIAVRIIRAARELGMRTVAACSDADRDSLAARMADEAVHIGPSHAAKSYLNPAAILAAARQCGADAIHPG 84 (467)
T ss_pred CcEEEEECCcHHHHHHHHHHHHcCCeEEEEECCCCCCChhHHhCCEEEecCCCCccccccCHHHHHHHHHHhCCCEEEEC
Confidence 4678999999999999999999999999995543321 1111112223234 5556444 445555567887765
Q ss_pred cCCCcchHHHHHHHHhh-----CCCceEEEEecChh-hHHHHHHCCCCe
Q 001051 1081 LDTPGANYRTVWALSKY-----FPNVKTFVRAHDID-HGLNLEKAGATA 1123 (1173)
Q Consensus 1081 t~Dd~~Ni~iv~~ar~l-----~p~~~IIara~d~e-~~~~L~~aGAd~ 1123 (1173)
.+-...|...+..+.+. +|+...+..+.|.. ..+.++++|+..
T Consensus 85 ~g~lsE~~~~~~~~e~~gi~~igps~~ai~~~~DK~~~r~~l~~~GIp~ 133 (467)
T PRK12833 85 YGFLSENAAFAEAVEAAGLIFVGPDAQTIRTMGDKARARRTARRAGVPT 133 (467)
T ss_pred CCccccCHHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHcCCCC
Confidence 44334454444444443 34555566666654 445567888773
No 453
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=73.55 E-value=4.4 Score=46.73 Aligned_cols=64 Identities=27% Similarity=0.213 Sum_probs=49.3
Q ss_pred cCCCccHHHHHHHHHhCCCCeEEecCCchHHH-hhhhCCCCEEEecCCCHHHHhhcCcc-ccCEEE
Q 001051 1015 CGFGRVGQIIAQLLSERLIPFVALDVRSDRVA-IGRALDLPVYFGDAGSREVLHKVGAE-RACAAA 1078 (1173)
Q Consensus 1015 iG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve-~l~~~g~~vi~GDasd~e~Le~agI~-~A~~VV 1078 (1173)
=|.|.+|...+.+|.+.|++|+|+|+-...-. .+...-.+++.||..|.+.|.+.--+ +.++|+
T Consensus 7 GGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~~~~f~~gDi~D~~~L~~vf~~~~idaVi 72 (329)
T COG1087 7 GGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKLQFKFYEGDLLDRALLTAVFEENKIDAVV 72 (329)
T ss_pred cCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhccCceEEeccccHHHHHHHHHhcCCCEEE
Confidence 46899999999999999999999998765433 33222268999999999999877443 555554
No 454
>PLN00203 glutamyl-tRNA reductase
Probab=73.52 E-value=3.7 Score=51.05 Aligned_cols=74 Identities=16% Similarity=0.281 Sum_probs=54.2
Q ss_pred cccccccCCCccHHHHHHHHHhCCC-CeEEecCCchHHHhhhhC--CCCEEEecCCCHHHHhhcCccccCEEEEecCCCc
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLI-PFVALDVRSDRVAIGRAL--DLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi-~VvVID~D~e~ve~l~~~--g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~ 1085 (1173)
...++|+|.|.+|..+++.|...|. +++++++++++.+.+.+. +..+..-+..+ +.+ .+.++|.||.+|+.+.
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~d---l~~-al~~aDVVIsAT~s~~ 341 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDE---MLA-CAAEADVVFTSTSSET 341 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhh---HHH-HHhcCCEEEEccCCCC
Confidence 3569999999999999999999996 699999999998877653 33332222222 222 2468999999997764
Q ss_pred c
Q 001051 1086 A 1086 (1173)
Q Consensus 1086 ~ 1086 (1173)
.
T Consensus 342 p 342 (519)
T PLN00203 342 P 342 (519)
T ss_pred C
Confidence 3
No 455
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=73.49 E-value=18 Score=44.58 Aligned_cols=129 Identities=15% Similarity=0.086 Sum_probs=78.8
Q ss_pred ccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhC-CCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchH
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL-DLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~-g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni 1088 (1173)
+.++|+|.|..|+.++..|.+.|.++++.++++++.+.+.+. +...+ +.+.+.. +.++|.||.+++.... +
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~-----~~~~~~~--l~~~DiVInatP~g~~-~ 404 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAF-----PLESLPE--LHRIDIIINCLPPSVT-I 404 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccee-----chhHhcc--cCCCCEEEEcCCCCCc-c
Confidence 468899999999999999999999999999998888766432 21111 1122222 4579999999987642 1
Q ss_pred HHHHHHHhhCCCceEEEEecChh---hHHHHHHCCCCeeecCCcHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHh
Q 001051 1089 RTVWALSKYFPNVKTFVRAHDID---HGLNLEKAGATAVVPETLEPSLQLAAAVLAQ----AKLPASEIAATINEFRTR 1160 (1173)
Q Consensus 1089 ~iv~~ar~l~p~~~IIara~d~e---~~~~L~~aGAd~VI~p~~~aa~~LA~~vl~~----l~~~~~ei~~~i~~~r~~ 1160 (1173)
. .. ..+ .++=.++++. ..+..++.|+. ++.- -..+..+.... .|... .+.+++.|||+
T Consensus 405 ~--~~---l~~--~v~D~~Y~P~~T~ll~~A~~~G~~-~~~G----~~Ml~~Qa~~~f~lw~g~~~--~~~~~~~~~~~ 469 (477)
T PRK09310 405 P--KA---FPP--CVVDINTLPKHSPYTQYARSQGSS-IIYG----YEMFAEQALLQFRLWFPTLL--FKHLEKTFRRR 469 (477)
T ss_pred h--hH---Hhh--hEEeccCCCCCCHHHHHHHHCcCE-EECc----HHHHHHHHHHHHHHHcCCcc--cHHHHHHHHHH
Confidence 1 11 111 2333444443 45566777874 4433 23333333332 34433 44778888876
No 456
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=73.46 E-value=3.7 Score=47.00 Aligned_cols=71 Identities=17% Similarity=0.019 Sum_probs=51.2
Q ss_pred ccccccC-CCccHHHHHHHHHhCCCCeEEecCCchHH---Hhhh-----hCCCCEEEecCCCHHHHhhcCccccCEEEEe
Q 001051 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRV---AIGR-----ALDLPVYFGDAGSREVLHKVGAERACAAAIT 1080 (1173)
Q Consensus 1010 ~hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~v---e~l~-----~~g~~vi~GDasd~e~Le~agI~~A~~VVi~ 1080 (1173)
+.++|.| .|-+|..+++.|.++|++|+++.++.... +.+. ...+.++.||.++++.+.++- ++++.|+-+
T Consensus 6 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~-~~~d~vih~ 84 (322)
T PLN02986 6 KLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAI-EGCDAVFHT 84 (322)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHH-hCCCEEEEe
Confidence 3567777 68999999999999999998776665432 2221 124678899999999887653 346777655
Q ss_pred c
Q 001051 1081 L 1081 (1173)
Q Consensus 1081 t 1081 (1173)
.
T Consensus 85 A 85 (322)
T PLN02986 85 A 85 (322)
T ss_pred C
Confidence 4
No 457
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=73.24 E-value=7.8 Score=47.78 Aligned_cols=72 Identities=18% Similarity=0.185 Sum_probs=50.4
Q ss_pred ccccccCCCccHHHHHHHHHhCCCCeEEecCCch--HHHhhhhC--CCCEEEecCCCHHHHhhcCccccCEEEEecCCCc
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSD--RVAIGRAL--DLPVYFGDAGSREVLHKVGAERACAAAITLDTPG 1085 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e--~ve~l~~~--g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~ 1085 (1173)
+++.++|.|..|..+++.|.++|++|.+.|.++. ..+.++.. |..+..|+-. ++.+ .++|.||+...-+.
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~-~~~~-----~~~d~vv~sp~I~~ 81 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFD-PALL-----DGVDLVALSPGLSP 81 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCc-hhHh-----cCCCEEEECCCCCC
Confidence 4689999999999999999999999999997653 33446555 4455555332 4444 34788877755444
Q ss_pred ch
Q 001051 1086 AN 1087 (1173)
Q Consensus 1086 ~N 1087 (1173)
.|
T Consensus 82 ~~ 83 (498)
T PRK02006 82 LE 83 (498)
T ss_pred cc
Confidence 33
No 458
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=73.21 E-value=6 Score=43.57 Aligned_cols=72 Identities=15% Similarity=0.110 Sum_probs=53.7
Q ss_pred ccccccC-CCccHHHHHHHHHhCCCCeEEecCCc-hHHHhhhhCCCCEEEecCCCHHHHhhcC------ccccCEEEEec
Q 001051 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRS-DRVAIGRALDLPVYFGDAGSREVLHKVG------AERACAAAITL 1081 (1173)
Q Consensus 1010 ~hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~-e~ve~l~~~g~~vi~GDasd~e~Le~ag------I~~A~~VVi~t 1081 (1173)
+.++|.| .+.+|..+++.|.+.|++|+++.++. +..+.++..+..++..|.++++.++++- ..+.|.+|-..
T Consensus 8 k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li~~a 87 (255)
T PRK06463 8 KVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKELREKGVFTIKCDVGNRDQVKKSKEVVEKEFGRVDVLVNNA 87 (255)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence 4566666 58899999999999999998886654 4455565557788999999999876641 13567777554
No 459
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=73.08 E-value=8.9 Score=46.50 Aligned_cols=76 Identities=21% Similarity=0.294 Sum_probs=54.9
Q ss_pred cccccccCCCccHHHHHHHHHhCCCCeEEecCCch--HHHhhhh--CCCCEEEecCCCHHHHhhcCccccCEEEEecCCC
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSD--RVAIGRA--LDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e--~ve~l~~--~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd 1084 (1173)
.+.++|+|.|..|..+++.|.++|++|++.|.++. ..+.+++ .|..+..|.-. ++.+ .+++.||....-+
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~-~~~~-----~~~d~vV~sp~i~ 79 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFD-CELL-----VQASEIIISPGLA 79 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCC-hHHh-----cCCCEEEECCCCC
Confidence 46789999999999999999999999999997643 3344655 37777776322 3333 3578887777666
Q ss_pred cchHHH
Q 001051 1085 GANYRT 1090 (1173)
Q Consensus 1085 ~~Ni~i 1090 (1173)
..|-.+
T Consensus 80 ~~~p~~ 85 (448)
T PRK03803 80 LDTPAL 85 (448)
T ss_pred CCCHHH
Confidence 555433
No 460
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=72.92 E-value=4.2 Score=44.16 Aligned_cols=73 Identities=11% Similarity=0.060 Sum_probs=53.4
Q ss_pred ccccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhh----hhC--CCCEEEecCCCHHHHhhcC------ccccCE
Q 001051 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIG----RAL--DLPVYFGDAGSREVLHKVG------AERACA 1076 (1173)
Q Consensus 1010 ~hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l----~~~--g~~vi~GDasd~e~Le~ag------I~~A~~ 1076 (1173)
+.++|.| .|.+|..+++.|.++|+.|++++++++..+.. ... ...++.+|.++++.++++- ....|.
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 87 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGSIDI 87 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCCccE
Confidence 4567776 56899999999999999999999997765433 222 3456789999999876541 235788
Q ss_pred EEEecC
Q 001051 1077 AAITLD 1082 (1173)
Q Consensus 1077 VVi~t~ 1082 (1173)
+|...+
T Consensus 88 vi~~ag 93 (239)
T PRK07666 88 LINNAG 93 (239)
T ss_pred EEEcCc
Confidence 776653
No 461
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=72.92 E-value=4.2 Score=44.74 Aligned_cols=72 Identities=17% Similarity=0.093 Sum_probs=51.7
Q ss_pred cccccCC-CccHHHHHHHHHhCCCCeEEecCCchHHHhhh----h----CCCCEEEecCCCHHHHhhcCc------cccC
Q 001051 1011 HIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIGR----A----LDLPVYFGDAGSREVLHKVGA------ERAC 1075 (1173)
Q Consensus 1011 hvIIiG~-G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~----~----~g~~vi~GDasd~e~Le~agI------~~A~ 1075 (1173)
.++|.|. +.+|..+++.|.++|+++++++++++..+... . .....+.+|.++++.++++-- ...|
T Consensus 4 ~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~id 83 (259)
T PRK12384 4 VAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGRVD 83 (259)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 4566664 67999999999999999999999876554332 1 135678899999887765411 2467
Q ss_pred EEEEecC
Q 001051 1076 AAAITLD 1082 (1173)
Q Consensus 1076 ~VVi~t~ 1082 (1173)
.+|-..+
T Consensus 84 ~vv~~ag 90 (259)
T PRK12384 84 LLVYNAG 90 (259)
T ss_pred EEEECCC
Confidence 7776553
No 462
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=72.88 E-value=46 Score=40.55 Aligned_cols=91 Identities=18% Similarity=0.191 Sum_probs=53.6
Q ss_pred cccccccCCCccHHHHHHHHHhC---CCCe-EEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCC
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSER---LIPF-VALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~---gi~V-vVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd 1084 (1173)
.++++|+|.|+.|..+++.|.+. |+.+ -.+|.|+...... .|.+++ |+..+. .+-+.-.+++.|+++.+..
T Consensus 128 ~~rvLIiGag~~~~~l~~~L~~~~~~g~~vvG~idd~~~~~~~~--~gvpVl-g~~~dl--~~~i~~~~vd~ViIA~p~~ 202 (451)
T TIGR03023 128 LRRVLIVGAGELGRRLAERLARNPELGYRVVGFFDDRPDARTGV--RGVPVL-GKLDDL--EELIREGEVDEVYIALPLA 202 (451)
T ss_pred CCcEEEEeCCHHHHHHHHHHHhCccCCcEEEEEEeCCCcccccc--CCCCcc-CCHHHH--HHHHHhcCCCEEEEeeCcc
Confidence 46799999999999999999753 4444 4467665443211 455543 443332 2222334688888888765
Q ss_pred cch--HHHHHHHHhhCCCceEE
Q 001051 1085 GAN--YRTVWALSKYFPNVKTF 1104 (1173)
Q Consensus 1085 ~~N--i~iv~~ar~l~p~~~II 1104 (1173)
... ..+...+++.+.+++++
T Consensus 203 ~~~~~~~ll~~~~~~gv~V~vv 224 (451)
T TIGR03023 203 AEDRILELLDALEDLTVDVRLV 224 (451)
T ss_pred cHHHHHHHHHHHHhcCCEEEEe
Confidence 432 23444555554444433
No 463
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=72.88 E-value=4.1 Score=45.82 Aligned_cols=68 Identities=16% Similarity=0.113 Sum_probs=51.8
Q ss_pred ccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEe
Q 001051 1012 IILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAIT 1080 (1173)
Q Consensus 1012 vIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~ 1080 (1173)
++|.| .|-+|..+++.|.+.|++|+++|+......... .+...+.+|.++.+...++--...+.|+-+
T Consensus 3 ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~d~vih~ 71 (314)
T COG0451 3 ILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL-SGVEFVVLDLTDRDLVDELAKGVPDAVIHL 71 (314)
T ss_pred EEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccc-cccceeeecccchHHHHHHHhcCCCEEEEc
Confidence 77888 599999999999999999999999877665554 677889999999866665432211554443
No 464
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=72.86 E-value=7.4 Score=50.30 Aligned_cols=69 Identities=20% Similarity=0.296 Sum_probs=51.6
Q ss_pred ccccccCCCccHHHHHHHHHhCC--CCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCC
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERL--IPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTP 1084 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~g--i~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd 1084 (1173)
+++.|+|.|.+|..+++.|.+.| .+|+++|+++++.+.+.+.|... -...+ +.+ .++++|.|+++++..
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~--~~~~~---~~~-~~~~aDvVilavp~~ 74 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVID--RGEED---LAE-AVSGADVIVLAVPVL 74 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCC--cccCC---HHH-HhcCCCEEEECCCHH
Confidence 45888999999999999999988 47999999999988877766421 01111 111 145789999999875
No 465
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=72.84 E-value=9.2 Score=37.29 Aligned_cols=90 Identities=23% Similarity=0.209 Sum_probs=60.9
Q ss_pred HHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEec-CCC--cchHHHHHHHHhhC
Q 001051 1022 QIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITL-DTP--GANYRTVWALSKYF 1098 (1173)
Q Consensus 1022 ~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t-~Dd--~~Ni~iv~~ar~l~ 1098 (1173)
..++..|++.|++|.++|.+... .+..+.+.-.+.+.|.+++ ... ..-..++..+|+.+
T Consensus 18 ~~la~~l~~~G~~v~~~d~~~~~------------------~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~ 79 (121)
T PF02310_consen 18 LYLAAYLRKAGHEVDILDANVPP------------------EELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERN 79 (121)
T ss_dssp HHHHHHHHHTTBEEEEEESSB-H------------------HHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCeEEEECCCCCH------------------HHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcC
Confidence 35677888889999999887543 3344445455778877766 333 22345677788899
Q ss_pred CCceEEEEecC--hhhHHHHHH-CCCCeeecCCc
Q 001051 1099 PNVKTFVRAHD--IDHGLNLEK-AGATAVVPETL 1129 (1173)
Q Consensus 1099 p~~~IIara~d--~e~~~~L~~-aGAd~VI~p~~ 1129 (1173)
|++++++=-.. ......++. .|+|.|+.-+-
T Consensus 80 p~~~iv~GG~~~t~~~~~~l~~~~~~D~vv~Geg 113 (121)
T PF02310_consen 80 PNIPIVVGGPHATADPEEILREYPGIDYVVRGEG 113 (121)
T ss_dssp TTSEEEEEESSSGHHHHHHHHHHHTSEEEEEETT
T ss_pred CCCEEEEECCchhcChHHHhccCcCcceecCCCh
Confidence 99888886654 345555666 89999886543
No 466
>PRK09414 glutamate dehydrogenase; Provisional
Probab=72.81 E-value=12 Score=45.69 Aligned_cols=114 Identities=11% Similarity=0.045 Sum_probs=73.5
Q ss_pred cccccccCCCccHHHHHHHHHhCCCCeEEe-c----------CCchHHHhhhhCC---CCEEE---e-cCCCHHHHhhcC
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLIPFVAL-D----------VRSDRVAIGRALD---LPVYF---G-DAGSREVLHKVG 1070 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi~VvVI-D----------~D~e~ve~l~~~g---~~vi~---G-Dasd~e~Le~ag 1070 (1173)
..+++|.|+|.+|+.+++.|.+.|..|+.| | -|.+.+...++.. +.-+. | ...+.+.+..
T Consensus 232 g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~i~~-- 309 (445)
T PRK09414 232 GKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGSPWS-- 309 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCccccc--
Confidence 357899999999999999999999999998 8 5766554443321 11110 0 1112222222
Q ss_pred ccccCEEEEecCCCcchHHHHHHHHhhCCCceEEEEecC----hhhHHHHHHCCCCeeecCCc
Q 001051 1071 AERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHD----IDHGLNLEKAGATAVVPETL 1129 (1173)
Q Consensus 1071 I~~A~~VVi~t~Dd~~Ni~iv~~ar~l~p~~~IIara~d----~e~~~~L~~aGAd~VI~p~~ 1129 (1173)
.++|.+|=+.-.+..|-.-+..++. +++++|+-.-| ++..++|++-|+-. .|..
T Consensus 310 -~d~DVliPaAl~n~It~~~a~~i~~--~~akiIvEgAN~p~t~~A~~~L~~rGI~~--vPD~ 367 (445)
T PRK09414 310 -VPCDIALPCATQNELDEEDAKTLIA--NGVKAVAEGANMPSTPEAIEVFLEAGVLF--APGK 367 (445)
T ss_pred -cCCcEEEecCCcCcCCHHHHHHHHH--cCCeEEEcCCCCCCCHHHHHHHHHCCcEE--ECch
Confidence 2588877777666666666655553 25788886654 67888898888653 3543
No 467
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=72.80 E-value=6.7 Score=40.22 Aligned_cols=93 Identities=26% Similarity=0.391 Sum_probs=59.7
Q ss_pred cccccCC-CccHHHHHHHHHhCCC--CeEEecCCchHHHhh----hh----CCCCEEEecCCCHHHHhhcCccccCEEEE
Q 001051 1011 HIILCGF-GRVGQIIAQLLSERLI--PFVALDVRSDRVAIG----RA----LDLPVYFGDAGSREVLHKVGAERACAAAI 1079 (1173)
Q Consensus 1011 hvIIiG~-G~~G~~Ia~~L~~~gi--~VvVID~D~e~ve~l----~~----~g~~vi~GDasd~e~Le~agI~~A~~VVi 1079 (1173)
++.|+|. |.+|..++..|...+. +++++|.+++..+-. .+ .+.++..+. .+.+ .+.++|.||+
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~-~~~~-----~~~~aDivvi 75 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS-GDYE-----ALKDADIVVI 75 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE-SSGG-----GGTTESEEEE
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccc-cccc-----ccccccEEEE
Confidence 5789999 9999999999987765 699999998765422 11 122333333 2322 3557899999
Q ss_pred ecCCC-----------cchHH----HHHHHHhhCCCceEEEEecCh
Q 001051 1080 TLDTP-----------GANYR----TVWALSKYFPNVKTFVRAHDI 1110 (1173)
Q Consensus 1080 ~t~Dd-----------~~Ni~----iv~~ar~l~p~~~IIara~d~ 1110 (1173)
+.+.+ +.|.. ++..+++..|+.. ++.+.+|
T Consensus 76 tag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~-vivvtNP 120 (141)
T PF00056_consen 76 TAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAI-VIVVTNP 120 (141)
T ss_dssp TTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSE-EEE-SSS
T ss_pred eccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccE-EEEeCCc
Confidence 88775 24443 3446667788764 4444544
No 468
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=72.61 E-value=11 Score=43.77 Aligned_cols=90 Identities=18% Similarity=0.127 Sum_probs=60.7
Q ss_pred ccccccCCCccHHHHHHHHHhCCCCeEEecC---CchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcc
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDV---RSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~---D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~ 1086 (1173)
..++|.|.|.+|...++.++..|..++++++ ++++.+.+++.|...+ |..+.+..+......+|.++-+++.+.
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v--~~~~~~~~~~~~~~~~d~vid~~g~~~- 250 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV--NSSKTPVAEVKLVGEFDLIIEATGVPP- 250 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe--cCCccchhhhhhcCCCCEEEECcCCHH-
Confidence 4688999999999999999999999999997 6788888888887754 333322111111246899988888653
Q ss_pred hHHHHHHHHhhCCCceEE
Q 001051 1087 NYRTVWALSKYFPNVKTF 1104 (1173)
Q Consensus 1087 Ni~iv~~ar~l~p~~~II 1104 (1173)
.+...++.+.++-+++
T Consensus 251 --~~~~~~~~l~~~G~~v 266 (355)
T cd08230 251 --LAFEALPALAPNGVVI 266 (355)
T ss_pred --HHHHHHHHccCCcEEE
Confidence 2233344444443443
No 469
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=72.58 E-value=7.5 Score=45.58 Aligned_cols=83 Identities=14% Similarity=0.146 Sum_probs=54.0
Q ss_pred cccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchH--
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY-- 1088 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni-- 1088 (1173)
.+.|+|+|.+|+.+++.|...|.+|++.|++++..... .. . ..+ ++++ ++++|.|++.++....+.
T Consensus 148 ~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----~~-~---~~~---l~el-l~~aDiVil~lP~t~~t~~l 215 (330)
T PRK12480 148 TVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----LT-Y---KDS---VKEA-IKDADIISLHVPANKESYHL 215 (330)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----hh-c---cCC---HHHH-HhcCCEEEEeCCCcHHHHHH
Confidence 58899999999999999999999999999987543211 00 0 111 2222 457899999998775433
Q ss_pred HHHHHHHhhCCCceEEE
Q 001051 1089 RTVWALSKYFPNVKTFV 1105 (1173)
Q Consensus 1089 ~iv~~ar~l~p~~~IIa 1105 (1173)
.-......+.++..+|-
T Consensus 216 i~~~~l~~mk~gavlIN 232 (330)
T PRK12480 216 FDKAMFDHVKKGAILVN 232 (330)
T ss_pred HhHHHHhcCCCCcEEEE
Confidence 22233333445544443
No 470
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=72.58 E-value=7.7 Score=47.09 Aligned_cols=73 Identities=26% Similarity=0.379 Sum_probs=54.3
Q ss_pred cccccCCCccHHH-HHHHHHhCCCCeEEecCCch-HHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchH
Q 001051 1011 HIILCGFGRVGQI-IAQLLSERLIPFVALDVRSD-RVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANY 1088 (1173)
Q Consensus 1011 hvIIiG~G~~G~~-Ia~~L~~~gi~VvVID~D~e-~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni 1088 (1173)
|+.++|.|..|.. +++.|.++|++|++.|.++. ..+.+++.|+.++.| .+++.+ .+++.||....-+..|-
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g--~~~~~~-----~~~d~vV~spgi~~~~p 73 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIG--HSAENL-----DDADVVVVSAAIKDDNP 73 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCC--CCHHHC-----CCCCEEEECCCCCCCCH
Confidence 3568999999998 99999999999999997653 445677778888777 445444 35788887766665554
Q ss_pred HH
Q 001051 1089 RT 1090 (1173)
Q Consensus 1089 ~i 1090 (1173)
.+
T Consensus 74 ~~ 75 (448)
T TIGR01082 74 EI 75 (448)
T ss_pred HH
Confidence 33
No 471
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=72.57 E-value=6.9 Score=44.09 Aligned_cols=130 Identities=15% Similarity=0.070 Sum_probs=75.5
Q ss_pred ccccCC-CccHHHHHHHHHhCC----CCeEEecCCchHHHhhhh----CCCC----EEEecCCCHHHHhhcCccccCEEE
Q 001051 1012 IILCGF-GRVGQIIAQLLSERL----IPFVALDVRSDRVAIGRA----LDLP----VYFGDAGSREVLHKVGAERACAAA 1078 (1173)
Q Consensus 1012 vIIiG~-G~~G~~Ia~~L~~~g----i~VvVID~D~e~ve~l~~----~g~~----vi~GDasd~e~Le~agI~~A~~VV 1078 (1173)
+.|+|. |.+|..++..|...| .+++++|.++++.+.... .-.. -+.. .+| + ...+.+||.||
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~-~~d---~-~~~~~~aDiVv 75 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSI-TDD---P-YEAFKDADVVI 75 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEE-CCc---h-HHHhCCCCEEE
Confidence 467898 999999999998888 789999999876543321 1110 1111 122 1 22356799999
Q ss_pred EecCCC-----------cchH----HHHHHHHhhCCCceEEEEecChh--hHHHHHHC---CCCeeecCCcHHHHHHHHH
Q 001051 1079 ITLDTP-----------GANY----RTVWALSKYFPNVKTFVRAHDID--HGLNLEKA---GATAVVPETLEPSLQLAAA 1138 (1173)
Q Consensus 1079 i~t~Dd-----------~~Ni----~iv~~ar~l~p~~~IIara~d~e--~~~~L~~a---GAd~VI~p~~~aa~~LA~~ 1138 (1173)
++.+.+ ..|+ .++..+++..|+..++.- .+|. ....+.+. .-.+|+--...-..++-+.
T Consensus 76 ~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~-tNP~d~~t~~~~~~sg~~~~kviG~~~ld~~r~~~~ 154 (263)
T cd00650 76 ITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVV-SNPVDIITYLVWRYSGLPKEKVIGLGTLDPIRFRRI 154 (263)
T ss_pred ECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe-cCcHHHHHHHHHHHhCCCchhEEEeecchHHHHHHH
Confidence 976442 1332 345577778888765555 4543 22233332 3355654432334444445
Q ss_pred HHHhcCCCH
Q 001051 1139 VLAQAKLPA 1147 (1173)
Q Consensus 1139 vl~~l~~~~ 1147 (1173)
+-..++++.
T Consensus 155 la~~l~v~~ 163 (263)
T cd00650 155 LAEKLGVDP 163 (263)
T ss_pred HHHHhCCCc
Confidence 555566654
No 472
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=72.56 E-value=11 Score=40.93 Aligned_cols=98 Identities=14% Similarity=0.033 Sum_probs=59.2
Q ss_pred cccccccCCCccHHHHHHHHHhCCCC-eEEecCCchHHH-------------------------hhhhCC--C--CEEEe
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLIP-FVALDVRSDRVA-------------------------IGRALD--L--PVYFG 1058 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi~-VvVID~D~e~ve-------------------------~l~~~g--~--~vi~G 1058 (1173)
+.+++|+|.|-+|..+++.|...|.. ++++|.|.-... ++++.+ . ..+..
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~~~ 98 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIVEE 98 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEEec
Confidence 46899999999999999999999985 999998832111 122221 1 22333
Q ss_pred cCCCHHHHhhcCccccCEEEEecCCCcchHHHHHHHHhhCCCceEEEEe
Q 001051 1059 DAGSREVLHKVGAERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRA 1107 (1173)
Q Consensus 1059 Dasd~e~Le~agI~~A~~VVi~t~Dd~~Ni~iv~~ar~l~p~~~IIara 1107 (1173)
+..+.......-+.++|.||.++++......+-..+++.+- +.+.+.+
T Consensus 99 ~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~i-p~i~~~~ 146 (198)
T cd01485 99 DSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHHI-PFISCAT 146 (198)
T ss_pred ccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCC-CEEEEEe
Confidence 33311111111245788888777665555666667777653 2344443
No 473
>PRK01581 speE spermidine synthase; Validated
Probab=72.56 E-value=18 Score=43.08 Aligned_cols=111 Identities=14% Similarity=0.152 Sum_probs=69.5
Q ss_pred ccccccCCCccHHHHHHHHHhC-CCCeEEecCCchHHHhhhh--------------CCCCEEEecCCCHHHHhhcCcccc
Q 001051 1010 DHIILCGFGRVGQIIAQLLSER-LIPFVALDVRSDRVAIGRA--------------LDLPVYFGDAGSREVLHKVGAERA 1074 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~-gi~VvVID~D~e~ve~l~~--------------~g~~vi~GDasd~e~Le~agI~~A 1074 (1173)
++++++|+|.-+ .+...|+.. ...+++||.|++.++.++. ..+.+++||+.+ .+... -+..
T Consensus 152 krVLIIGgGdG~-tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~--fL~~~-~~~Y 227 (374)
T PRK01581 152 KRVLILGGGDGL-ALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKE--FLSSP-SSLY 227 (374)
T ss_pred CEEEEECCCHHH-HHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHH--HHHhc-CCCc
Confidence 478999988544 444444432 2589999999999887763 245678888874 34443 2478
Q ss_pred CEEEEecCCCcch----H----HHHHHHHhhCCCceEEEEecChhh--------HHHHHHCCCCee
Q 001051 1075 CAAAITLDTPGAN----Y----RTVWALSKYFPNVKTFVRAHDIDH--------GLNLEKAGATAV 1124 (1173)
Q Consensus 1075 ~~VVi~t~Dd~~N----i----~iv~~ar~l~p~~~IIara~d~e~--------~~~L~~aGAd~V 1124 (1173)
|.|++-..|+... + ......+.+.|+-.+++.+.++.. ...|+++|....
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~ 293 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVK 293 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceE
Confidence 9999988776321 1 233455667787655665554432 233466666544
No 474
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=72.52 E-value=23 Score=42.61 Aligned_cols=115 Identities=11% Similarity=0.075 Sum_probs=71.0
Q ss_pred cccccccCCCccHHHHHHHHHhCCC-CeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcch
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLI-PFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGAN 1087 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi-~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~N 1087 (1173)
..+|+|+|.|-+|..++..|...|+ .++++|.|.-....+ +.++++. .-++ +.. .-
T Consensus 42 ~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL---~Rq~l~~---------~~di----------G~~-Ka 98 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNL---QRQVIHG---------QSDV----------GRS-KA 98 (392)
T ss_pred cCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCccc---ccccccC---------hhcC----------CCh-HH
Confidence 4579999999999999999999997 799999885433322 1112211 0011 111 22
Q ss_pred HHHHHHHHhhCCCceEEEEecChhhHHHHH-HCCCCeeecC-CcHHHHHHHHHHHHhcCCC
Q 001051 1088 YRTVWALSKYFPNVKTFVRAHDIDHGLNLE-KAGATAVVPE-TLEPSLQLAAAVLAQAKLP 1146 (1173)
Q Consensus 1088 i~iv~~ar~l~p~~~IIara~d~e~~~~L~-~aGAd~VI~p-~~~aa~~LA~~vl~~l~~~ 1146 (1173)
..+...+++++|+++|.+.....+...... -.+.|.||.- .....+.+.+.+....++|
T Consensus 99 ~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p 159 (392)
T PRK07878 99 QSARDSIVEINPLVNVRLHEFRLDPSNAVELFSQYDLILDGTDNFATRYLVNDAAVLAGKP 159 (392)
T ss_pred HHHHHHHHHhCCCcEEEEEeccCChhHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence 346668889999988876655433222111 1368888844 3445555666666655555
No 475
>PRK09135 pteridine reductase; Provisional
Probab=72.46 E-value=5.7 Score=43.07 Aligned_cols=73 Identities=19% Similarity=0.084 Sum_probs=52.2
Q ss_pred ccccccC-CCccHHHHHHHHHhCCCCeEEecCCc-hHHHhh----hh---CCCCEEEecCCCHHHHhhcCc------ccc
Q 001051 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRS-DRVAIG----RA---LDLPVYFGDAGSREVLHKVGA------ERA 1074 (1173)
Q Consensus 1010 ~hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~-e~ve~l----~~---~g~~vi~GDasd~e~Le~agI------~~A 1074 (1173)
+.++|.| .|.+|+.+++.|.++|++|++++++. +..+.+ ++ .....+.+|.++++.+.++-- ...
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~ 86 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAFGRL 86 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 4577777 58899999999999999999999863 333222 22 245678999999998775422 246
Q ss_pred CEEEEecC
Q 001051 1075 CAAAITLD 1082 (1173)
Q Consensus 1075 ~~VVi~t~ 1082 (1173)
|.|+-...
T Consensus 87 d~vi~~ag 94 (249)
T PRK09135 87 DALVNNAS 94 (249)
T ss_pred CEEEECCC
Confidence 77776654
No 476
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=72.43 E-value=51 Score=41.62 Aligned_cols=74 Identities=12% Similarity=0.096 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH---------hcCCChhhhhhhhhcccCCcch
Q 001051 873 YRGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGR---------LFGVSVISAIRTGLLLAPGGEF 943 (1173)
Q Consensus 873 ~~~~LlpiFFv~iGm~Idl~~L~~~~~lilllvvllvv~K~l~v~l~~~---------l~g~~~real~lGl~LaprGev 943 (1173)
+..+++|..-.-.|..++...+..++..++.+.++.++.-.+.+....+ ..++++.+++.+|..+++-.-+
T Consensus 68 f~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPV 147 (559)
T TIGR00840 68 FFLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPV 147 (559)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchH
Confidence 4556788877889999999999887766554444433333332222221 1256899999999888877766
Q ss_pred hhH
Q 001051 944 AFV 946 (1173)
Q Consensus 944 alv 946 (1173)
+.+
T Consensus 148 AVl 150 (559)
T TIGR00840 148 AVL 150 (559)
T ss_pred HHH
Confidence 544
No 477
>PRK06179 short chain dehydrogenase; Provisional
Probab=72.34 E-value=4.4 Score=44.98 Aligned_cols=70 Identities=13% Similarity=0.050 Sum_probs=53.9
Q ss_pred cccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcC------ccccCEEEEecC
Q 001051 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVG------AERACAAAITLD 1082 (1173)
Q Consensus 1011 hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~ag------I~~A~~VVi~t~ 1082 (1173)
.++|.| .|.+|..+++.|.++|++|++++++++..+. ..+..++.+|.+|++.++++- ....|.+|...+
T Consensus 6 ~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d~li~~ag 82 (270)
T PRK06179 6 VALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAP--IPGVELLELDVTDDASVQAAVDEVIARAGRIDVLVNNAG 82 (270)
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccc--cCCCeeEEeecCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence 466666 5789999999999999999999999776543 246788999999999887642 124677776654
No 478
>PRK07574 formate dehydrogenase; Provisional
Probab=72.25 E-value=27 Score=42.04 Aligned_cols=87 Identities=13% Similarity=0.067 Sum_probs=56.4
Q ss_pred ccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchHH
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYR 1089 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni~ 1089 (1173)
..+.|+|+|.+|+.+++.|...|.+|++.|+.+...+..+..|.. . .. .++++ +.++|.|++.++....+..
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~--~--~~---~l~el-l~~aDvV~l~lPlt~~T~~ 264 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLT--Y--HV---SFDSL-VSVCDVVTIHCPLHPETEH 264 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCce--e--cC---CHHHH-hhcCCEEEEcCCCCHHHHH
Confidence 458899999999999999999999999999876333322333321 1 11 23332 3678999999987654433
Q ss_pred H--HHHHHhhCCCceEE
Q 001051 1090 T--VWALSKYFPNVKTF 1104 (1173)
Q Consensus 1090 i--v~~ar~l~p~~~II 1104 (1173)
+ ...+..+-++..+|
T Consensus 265 li~~~~l~~mk~ga~lI 281 (385)
T PRK07574 265 LFDADVLSRMKRGSYLV 281 (385)
T ss_pred HhCHHHHhcCCCCcEEE
Confidence 3 23344445554444
No 479
>PRK06184 hypothetical protein; Provisional
Probab=72.19 E-value=1.8 Score=53.10 Aligned_cols=57 Identities=19% Similarity=0.294 Sum_probs=40.8
Q ss_pred ccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCc
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGA 1071 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI 1071 (1173)
-.|+|+|.|..|..+|-.|.++|++|+++|+.++.....+ ...-.+...++|+++|+
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~r-----a~~l~~~~~e~l~~lGl 60 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSR-----GKGIQPRTQEVFDDLGV 60 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCcc-----ceeecHHHHHHHHHcCc
Confidence 3689999999999999999999999999999865422111 11112444556666665
No 480
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=72.16 E-value=58 Score=35.68 Aligned_cols=104 Identities=15% Similarity=0.153 Sum_probs=66.4
Q ss_pred cHHHHHHHHHhCCCCeEEecCCchHHHhhhhC-CCCEE---Ee---------cCCCHHHHhhcCccccCEEEEecCC---
Q 001051 1020 VGQIIAQLLSERLIPFVALDVRSDRVAIGRAL-DLPVY---FG---------DAGSREVLHKVGAERACAAAITLDT--- 1083 (1173)
Q Consensus 1020 ~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~-g~~vi---~G---------Dasd~e~Le~agI~~A~~VVi~t~D--- 1083 (1173)
....+++...+.|...+.++. .+.++..++. +.+++ +- ++. .+..+++--..++.+++....
T Consensus 24 ~~~~~a~a~~~~G~~~~~~~~-~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~-~~~v~~a~~aGad~I~~d~~~~~~ 101 (221)
T PRK01130 24 IMAAMALAAVQGGAVGIRANG-VEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPT-LKEVDALAAAGADIIALDATLRPR 101 (221)
T ss_pred HHHHHHHHHHHCCCeEEEcCC-HHHHHHHHHhCCCCEEEEEecCCCCCCceECCC-HHHHHHHHHcCCCEEEEeCCCCCC
Confidence 346677777777877666653 5566655442 44443 21 122 222233322346766655443
Q ss_pred C--cchHHHHHHHHhhCCCceEEEEecChhhHHHHHHCCCCeeec
Q 001051 1084 P--GANYRTVWALSKYFPNVKTFVRAHDIDHGLNLEKAGATAVVP 1126 (1173)
Q Consensus 1084 d--~~Ni~iv~~ar~l~p~~~IIara~d~e~~~~L~~aGAd~VI~ 1126 (1173)
+ +....+...+|+. ++..+++.+++.+....+.+.|+|.+..
T Consensus 102 p~~~~~~~~i~~~~~~-~~i~vi~~v~t~ee~~~a~~~G~d~i~~ 145 (221)
T PRK01130 102 PDGETLAELVKRIKEY-PGQLLMADCSTLEEGLAAQKLGFDFIGT 145 (221)
T ss_pred CCCCCHHHHHHHHHhC-CCCeEEEeCCCHHHHHHHHHcCCCEEEc
Confidence 2 4556777788886 7888999999999999999999998864
No 481
>PRK07877 hypothetical protein; Provisional
Probab=72.13 E-value=15 Score=47.45 Aligned_cols=111 Identities=18% Similarity=0.178 Sum_probs=71.4
Q ss_pred cccccccCCCccHHHHHHHHHhCCC--CeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcc
Q 001051 1009 QDHIILCGFGRVGQIIAQLLSERLI--PFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1173)
Q Consensus 1009 k~hvIIiG~G~~G~~Ia~~L~~~gi--~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~ 1086 (1173)
+.+|+|+|.| +|..++..|...|+ .++++|.|.-... |+.+ ++....|-..
T Consensus 107 ~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~s-----------------------NLnR---q~~~~~diG~ 159 (722)
T PRK07877 107 RLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELS-----------------------NLNR---VPAGVFDLGV 159 (722)
T ss_pred cCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEccc-----------------------cccc---ccCChhhccc
Confidence 5689999999 99999999999995 8999998733222 2222 0122233333
Q ss_pred h--HHHHHHHHhhCCCceEEEEecCh--hhHHHHHHCCCCeeecCC-cHHHHHHHHHHHHhcCCCH
Q 001051 1087 N--YRTVWALSKYFPNVKTFVRAHDI--DHGLNLEKAGATAVVPET-LEPSLQLAAAVLAQAKLPA 1147 (1173)
Q Consensus 1087 N--i~iv~~ar~l~p~~~IIara~d~--e~~~~L~~aGAd~VI~p~-~~aa~~LA~~vl~~l~~~~ 1147 (1173)
+ ..+...++++||+++|.+....- ++.+.+- .++|.|+.-. ......+.+..-...++|.
T Consensus 160 ~Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~~~~l-~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~ 224 (722)
T PRK07877 160 NKAVVAARRIAELDPYLPVEVFTDGLTEDNVDAFL-DGLDVVVEECDSLDVKVLLREAARARRIPV 224 (722)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHh-cCCCEEEECCCCHHHHHHHHHHHHHcCCCE
Confidence 3 34566888899998888877654 3444332 3789998443 3445555665555556553
No 482
>PRK07102 short chain dehydrogenase; Provisional
Probab=72.12 E-value=4.4 Score=44.21 Aligned_cols=71 Identities=8% Similarity=-0.030 Sum_probs=51.9
Q ss_pred cccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhh-------CCCCEEEecCCCHHHHhhcCc---cccCEEEE
Q 001051 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRA-------LDLPVYFGDAGSREVLHKVGA---ERACAAAI 1079 (1173)
Q Consensus 1011 hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~-------~g~~vi~GDasd~e~Le~agI---~~A~~VVi 1079 (1173)
.++|.| .|.+|..+++.|.++|+.|++++++++..+...+ ....++.+|.++++.++++-- .+.+.++.
T Consensus 3 ~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~vv~ 82 (243)
T PRK07102 3 KILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIVLI 82 (243)
T ss_pred EEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEEEE
Confidence 456666 6889999999999999999999999876654321 135678899999987765411 23577775
Q ss_pred ec
Q 001051 1080 TL 1081 (1173)
Q Consensus 1080 ~t 1081 (1173)
..
T Consensus 83 ~a 84 (243)
T PRK07102 83 AV 84 (243)
T ss_pred CC
Confidence 43
No 483
>PRK06139 short chain dehydrogenase; Provisional
Probab=72.12 E-value=5.2 Score=46.68 Aligned_cols=73 Identities=16% Similarity=0.184 Sum_probs=54.7
Q ss_pred ccccccCC-CccHHHHHHHHHhCCCCeEEecCCchHHHhh----hhCC--CCEEEecCCCHHHHhhcC------ccccCE
Q 001051 1010 DHIILCGF-GRVGQIIAQLLSERLIPFVALDVRSDRVAIG----RALD--LPVYFGDAGSREVLHKVG------AERACA 1076 (1173)
Q Consensus 1010 ~hvIIiG~-G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l----~~~g--~~vi~GDasd~e~Le~ag------I~~A~~ 1076 (1173)
+.++|.|. +-+|..+++.|.++|.+|++++++++..+.. ++.| ..++..|.+|++.++++- ....|.
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~ 87 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGRIDV 87 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence 46777776 7899999999999999999999998876543 3334 346789999998877641 135677
Q ss_pred EEEecC
Q 001051 1077 AAITLD 1082 (1173)
Q Consensus 1077 VVi~t~ 1082 (1173)
+|-..+
T Consensus 88 lVnnAG 93 (330)
T PRK06139 88 WVNNVG 93 (330)
T ss_pred EEECCC
Confidence 766553
No 484
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=72.10 E-value=1.8e+02 Score=32.94 Aligned_cols=68 Identities=25% Similarity=0.300 Sum_probs=49.1
Q ss_pred hHHHHHhhhHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 001051 268 GLLLAAENDIKECQANLANCETELRRLQSKKEELQKEVDRLNEVAEKAQMNALKAEEDVANIMLLAEQ 335 (1173)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~a~~~~~~~m~~ae~ 335 (1173)
..+.+=+-|+-..+....+.+.||.++..+.++|+++..-|++.-.+-+-+..-+++.+-+-+.-++|
T Consensus 89 ~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e 156 (239)
T COG1579 89 RELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE 156 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566777777888888999999999999999999988888777766665555555444443333
No 485
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=72.10 E-value=4.5 Score=44.20 Aligned_cols=72 Identities=11% Similarity=0.080 Sum_probs=52.5
Q ss_pred cccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhh----hhCC--CCEEEecCCCHHHHhhc------CccccCEE
Q 001051 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIG----RALD--LPVYFGDAGSREVLHKV------GAERACAA 1077 (1173)
Q Consensus 1011 hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l----~~~g--~~vi~GDasd~e~Le~a------gI~~A~~V 1077 (1173)
.++|.| .|.+|..+++.|.+.|.++++++++++..+.+ +..+ ...+.+|.++++.+.++ .....+.+
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~v 81 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFDVM 81 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 356666 58999999999999999999999987665433 3333 45778999999987654 12246777
Q ss_pred EEecC
Q 001051 1078 AITLD 1082 (1173)
Q Consensus 1078 Vi~t~ 1082 (1173)
|-..+
T Consensus 82 i~~ag 86 (254)
T TIGR02415 82 VNNAG 86 (254)
T ss_pred EECCC
Confidence 66553
No 486
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=72.07 E-value=3.5 Score=48.95 Aligned_cols=62 Identities=19% Similarity=0.261 Sum_probs=44.0
Q ss_pred cccccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCc
Q 001051 1007 DLQDHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGA 1071 (1173)
Q Consensus 1007 ~lk~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI 1071 (1173)
...-.++|+|.|..|..+|..|.+.|++|+|+|+.+..... . .-..+.-.+...++|+++|+
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~--~-~g~~~~l~~~~~~~L~~lGl 77 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAA--A-KGQAYALSLLSARIFEGIGV 77 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccC--C-CCcEEEechHHHHHHHHCCh
Confidence 34567999999999999999999999999999998753110 0 11223334445566666665
No 487
>PRK07109 short chain dehydrogenase; Provisional
Probab=71.99 E-value=4.5 Score=47.17 Aligned_cols=72 Identities=15% Similarity=0.133 Sum_probs=52.8
Q ss_pred ccccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhh----hhCC--CCEEEecCCCHHHHhhcC------ccccCE
Q 001051 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIG----RALD--LPVYFGDAGSREVLHKVG------AERACA 1076 (1173)
Q Consensus 1010 ~hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l----~~~g--~~vi~GDasd~e~Le~ag------I~~A~~ 1076 (1173)
+.++|.| .+.+|..+++.|.++|.+|++++++++..+.. +..| ..++.+|.+|++.++++- ....|.
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~iD~ 88 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGPIDT 88 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCCCCCE
Confidence 3566666 47899999999999999999999998776544 2334 346789999999887651 125677
Q ss_pred EEEec
Q 001051 1077 AAITL 1081 (1173)
Q Consensus 1077 VVi~t 1081 (1173)
+|-..
T Consensus 89 lInnA 93 (334)
T PRK07109 89 WVNNA 93 (334)
T ss_pred EEECC
Confidence 66544
No 488
>PRK12829 short chain dehydrogenase; Provisional
Probab=71.88 E-value=5.3 Score=43.84 Aligned_cols=73 Identities=15% Similarity=0.118 Sum_probs=54.9
Q ss_pred ccccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhC----CCCEEEecCCCHHHHhhcC------ccccCEEE
Q 001051 1010 DHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL----DLPVYFGDAGSREVLHKVG------AERACAAA 1078 (1173)
Q Consensus 1010 ~hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~----g~~vi~GDasd~e~Le~ag------I~~A~~VV 1078 (1173)
++++|.| .|.+|..+++.|.++|+.|++++++++..+.+.+. .+.++.+|.++++.+.++- ....|+||
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi 91 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVERFGGLDVLV 91 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhCCCCEEE
Confidence 4566665 58899999999999999999999998776654332 2367889999999876531 23678887
Q ss_pred EecC
Q 001051 1079 ITLD 1082 (1173)
Q Consensus 1079 i~t~ 1082 (1173)
-...
T Consensus 92 ~~ag 95 (264)
T PRK12829 92 NNAG 95 (264)
T ss_pred ECCC
Confidence 6554
No 489
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=71.85 E-value=15 Score=42.79 Aligned_cols=85 Identities=15% Similarity=0.106 Sum_probs=55.9
Q ss_pred ccccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcchHH
Q 001051 1010 DHIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYR 1089 (1173)
Q Consensus 1010 ~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~Ni~ 1089 (1173)
+.+.|+|+|.+|+.+++.|...|.+|.++|+.++... +..... ....|+++ +.++|.|++..+....+..
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~-----~~~~~~----~~~~l~e~-l~~aDvvv~~lPlt~~T~~ 206 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWP-----GVQSFA----GREELSAF-LSQTRVLINLLPNTPETVG 206 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCC-----Cceeec----ccccHHHH-HhcCCEEEECCCCCHHHHH
Confidence 4678999999999999999999999999998654321 222221 12223322 3578999999988766544
Q ss_pred HH--HHHHhhCCCceEE
Q 001051 1090 TV--WALSKYFPNVKTF 1104 (1173)
Q Consensus 1090 iv--~~ar~l~p~~~II 1104 (1173)
+. ..+..+.|+..+|
T Consensus 207 li~~~~l~~mk~ga~lI 223 (312)
T PRK15469 207 IINQQLLEQLPDGAYLL 223 (312)
T ss_pred HhHHHHHhcCCCCcEEE
Confidence 43 3445555554443
No 490
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=71.85 E-value=85 Score=36.42 Aligned_cols=64 Identities=28% Similarity=0.404 Sum_probs=43.3
Q ss_pred HhhhhhHHHHH-HHHHHHHHHhchhHHHHHHHhhhHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 001051 167 AQLNSTMFEEK-AQRISEAAIALKDEAANAWNNVNVTLDMVHEIVNEECIAKEAVHKATMALSLAEARLQVAIESLQDVK 245 (1173)
Q Consensus 167 a~~~~~~~e~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 245 (1173)
.++|=|.|+.| ||+|++. +-|+-..--|.+| |--+++.+.-|.-.+.-||+|.+-|.-.|-+-|
T Consensus 142 ~~v~V~aF~p~eaq~Iaqa---ilkqse~lIN~Ls------------~rAr~dt~r~Ae~eV~~~eerv~kAs~~L~~yr 206 (372)
T COG3524 142 STVNVTAFDPKEAQKIAQA---ILKQSEKLINQLS------------ERARRDTVRFAEEEVQKAEERVKKASNDLTDYR 206 (372)
T ss_pred eEEEEeecChhhHHHHHHH---HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 56788889864 8998874 3455554445444 344555666666677778889988888877655
No 491
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=71.84 E-value=1.5e+02 Score=34.29 Aligned_cols=99 Identities=12% Similarity=0.100 Sum_probs=59.8
Q ss_pred CchHHHHHHHHHhhccc-cccccc-----CchhHHHHHHHHH------HHHHHHHhhcCChhHHHhchhhHHHHHHHHHH
Q 001051 626 GSPVLGYLAAGILIGPY-GLSIIR-----HVHGTKAIAEFGV------VFLLFNIGLELSVERLSSMKKYVFGLGSAQVL 693 (1173)
Q Consensus 626 lP~IvG~LLaGILLGP~-gLgli~-----~~~~~~~LaeLGL------~~LLF~aGLEldl~~Lrr~~k~il~La~~~vl 693 (1173)
=|..+.-|-.|.++.+. +-|+.. +......+...|+ .++++-.|--+|+.-+..+.+..+.-+..++-
T Consensus 40 EPlLL~PIgfG~iLvNiP~ag~~~~~~~~~~G~~~~~~~~gi~~~i~PllIFmGvGAmTDFgpllanPktllLGaAAQ~G 119 (375)
T COG1883 40 EPLLLLPIGFGGILVNIPGAGLADTALEGNPGVLALFYKVGIGSGIFPLLIFMGVGAMTDFGPLLANPKTLLLGAAAQFG 119 (375)
T ss_pred CceEeeecccceeeecCCcchhhcccccCCCcHHHHHHHHHhccCcccHHHHhccchhcccchhhcCcHHHHhhhHHHhc
Confidence 35444555566666542 112221 2333455555554 34455578889999999999988877777665
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHhhccccCcHH
Q 001051 694 VTAVVVGLVAHFVSGLPGPASIVIGNGLALSSTA 727 (1173)
Q Consensus 694 lt~~~vgll~~~llGls~~~ALlLGaiLS~TSpa 727 (1173)
+- .+++....+|+.+..|.-+|.+-..-.|.
T Consensus 120 IF---~t~~~A~~lgf~~~eAasIgIIGGADGPT 150 (375)
T COG1883 120 IF---ATVFGALALGFTPKEAASIGIIGGADGPT 150 (375)
T ss_pred hH---HHHHHHHHhCCCHhhhhheeeeccCCCCc
Confidence 42 22333445788888888888876654443
No 492
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=71.77 E-value=18 Score=44.91 Aligned_cols=117 Identities=14% Similarity=0.064 Sum_probs=83.1
Q ss_pred ccCCCccHHHHHHHHHhCCCCeEEecC---Cch----HHHhhhhC--CCCEEEecCCCHHHHhhcCccccCEEEEecCC-
Q 001051 1014 LCGFGRVGQIIAQLLSERLIPFVALDV---RSD----RVAIGRAL--DLPVYFGDAGSREVLHKVGAERACAAAITLDT- 1083 (1173)
Q Consensus 1014 IiG~G~~G~~Ia~~L~~~gi~VvVID~---D~e----~ve~l~~~--g~~vi~GDasd~e~Le~agI~~A~~VVi~t~D- 1083 (1173)
.+|.+.-....++.|.+.|.++++||. +.. .++++++. +.+++.|+..+.+.-+.+--..+|.+.+.++-
T Consensus 235 avg~~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~G 314 (495)
T PTZ00314 235 AISTRPEDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSG 314 (495)
T ss_pred EECCCHHHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCC
Confidence 467766668899999999999999997 333 46667665 67899999999888665555567787654211
Q ss_pred -------------Ccch--HHHHHHHHhhCCCceEEE--EecChhhHHHHHHCCCCeeecCCcHHH
Q 001051 1084 -------------PGAN--YRTVWALSKYFPNVKTFV--RAHDIDHGLNLEKAGATAVVPETLEPS 1132 (1173)
Q Consensus 1084 -------------d~~N--i~iv~~ar~l~p~~~IIa--ra~d~e~~~~L~~aGAd~VI~p~~~aa 1132 (1173)
+... ..+...+++. ++++|+ -..+..+..+.-.+||+.|..-...++
T Consensus 315 s~~~t~~~~~~g~p~~~ai~~~~~~~~~~--~v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~ 378 (495)
T PTZ00314 315 SICITQEVCAVGRPQASAVYHVARYARER--GVPCIADGGIKNSGDICKALALGADCVMLGSLLAG 378 (495)
T ss_pred cccccchhccCCCChHHHHHHHHHHHhhc--CCeEEecCCCCCHHHHHHHHHcCCCEEEECchhcc
Confidence 2111 1223333433 468999 889999999999999999997766554
No 493
>PRK12320 hypothetical protein; Provisional
Probab=71.70 E-value=9.1 Score=49.26 Aligned_cols=68 Identities=13% Similarity=0.095 Sum_probs=52.4
Q ss_pred cccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCC
Q 001051 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDT 1083 (1173)
Q Consensus 1011 hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~D 1083 (1173)
+++|.| .|-+|..+++.|.+.|++|+++|+++... ...++.++.||..++. +.++ +.++|.|+-+...
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~---~~~~ve~v~~Dl~d~~-l~~a-l~~~D~VIHLAa~ 70 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDA---LDPRVDYVCASLRNPV-LQEL-AGEADAVIHLAPV 70 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhc---ccCCceEEEccCCCHH-HHHH-hcCCCEEEEcCcc
Confidence 367777 69999999999999999999999876532 2346789999999986 4443 3467888777653
No 494
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=71.68 E-value=5.2 Score=45.55 Aligned_cols=62 Identities=18% Similarity=0.270 Sum_probs=50.8
Q ss_pred cccccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhC-------CCCEEEecCCCHHHHhhcC
Q 001051 1009 QDHIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRAL-------DLPVYFGDAGSREVLHKVG 1070 (1173)
Q Consensus 1009 k~hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~-------g~~vi~GDasd~e~Le~ag 1070 (1173)
.+.++|.| .+-+|+.+++.|.++|+++++|-++.++.+.+.++ ...++--|.++++.++++.
T Consensus 6 ~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~ 75 (265)
T COG0300 6 GKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLE 75 (265)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHH
Confidence 45778888 56799999999999999999999999988766432 1357889999999887754
No 495
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=71.62 E-value=1.2e+02 Score=36.18 Aligned_cols=75 Identities=16% Similarity=0.165 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhhcccCCcchhhHHHH
Q 001051 874 RGLLLGLFFMTVGMSIDPKLLLSNFPVITGALGLLIGGKTILVALVGRLFGVSVISAIRTGLLLAPGGEFAFVAFG 949 (1173)
Q Consensus 874 ~~~LlpiFFv~iGm~Idl~~L~~~~~lilllvvllvv~K~l~v~l~~~l~g~~~real~lGl~LaprGevalvla~ 949 (1173)
++++=|+.|+-+|..+|+.-+..+....++.-.+..++-++ +++.+..+|++.+|+..+|..-..-|-.++.+.+
T Consensus 104 ~gl~P~LIFlGIGAMtDFgpllanP~~~ll~gaaAQ~GiF~-t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~s~ 178 (399)
T TIGR03136 104 NSLVACILFFGIGAMSDISFILARPWASITVALFAEMGTFA-TLVIGYYCGLTPGEAAAVGTIGGADGPMVLFASL 178 (399)
T ss_pred cccHHHHHHHhccHHhcchHHHhChHHHHHHHHHHHhhHHH-HHHHHHHcCCCHHHhhHHhhcccCCccHHHHHHH
Confidence 46778889999999999999887665443323445555554 3445556799999999999987777776665544
No 496
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=71.58 E-value=3.7 Score=51.35 Aligned_cols=77 Identities=13% Similarity=0.087 Sum_probs=54.6
Q ss_pred ccccccccCCCccHHHHHHHHHhCCCCeEEecCCc---------------------hHHHhhhhCCCCEEEecCCCHH-H
Q 001051 1008 LQDHIILCGFGRVGQIIAQLLSERLIPFVALDVRS---------------------DRVAIGRALDLPVYFGDAGSRE-V 1065 (1173)
Q Consensus 1008 lk~hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~---------------------e~ve~l~~~g~~vi~GDasd~e-~ 1065 (1173)
..+.++|+|.|..|...+..|...|++|+++|..+ .+.+.+++.|..+..+.....+ .
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~ 215 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDIT 215 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCC
Confidence 35679999999999999999999999999999642 3455667788877665332111 1
Q ss_pred HhhcCccccCEEEEecCCCc
Q 001051 1066 LHKVGAERACAAAITLDTPG 1085 (1173)
Q Consensus 1066 Le~agI~~A~~VVi~t~Dd~ 1085 (1173)
..... .++|.|+.+++...
T Consensus 216 ~~~~~-~~~D~Vi~AtG~~~ 234 (564)
T PRK12771 216 LEQLE-GEFDAVFVAIGAQL 234 (564)
T ss_pred HHHHH-hhCCEEEEeeCCCC
Confidence 11111 25799999998653
No 497
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=71.47 E-value=38 Score=39.72 Aligned_cols=135 Identities=21% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcccccccccCchhHHHHHHHHHHHHHHHHhhcCChhHHHhchhhHHHHHHHHHHHHHH--HHHHHHHHH
Q 001051 629 VLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAV--VVGLVAHFV 706 (1173)
Q Consensus 629 IvG~LLaGILLGP~gLgli~~~~~~~~LaeLGL~~LLF~aGLEldl~~Lrr~~k~il~La~~~vllt~~--~vgll~~~l 706 (1173)
.+|-++.|.+.||.+..-+.+ ....+-.-.+.++|.+.|+.- .++++..++..+.+...+++.|.+ .+|+.+.++
T Consensus 183 LlGgliIG~~~g~~g~~~i~p--f~~~lF~G~L~lFLLeMGl~A-~~rL~~l~~~g~~li~Fgi~~Pli~a~ig~~lg~~ 259 (327)
T PF05982_consen 183 LLGGLIIGFLAGPEGVESIKP--FFVDLFKGVLCLFLLEMGLVA-ARRLRDLRKVGWFLIAFGILMPLINALIGIGLGWL 259 (327)
T ss_pred HHHHHHHhheeCccchhhccc--hhhccHHHHHHHHHHHhhHHH-HHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hCCChHHHHHHhhccccCcHHHHHHHHHhcCCCCCchhHHHHHHHh---hhhHHHHHHHHHHH
Q 001051 707 SGLPGPASIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLL---FQDLAVVVLLILIP 766 (1173)
Q Consensus 707 lGls~~~ALlLGaiLS~TSpaVVv~vL~elg~l~s~~grl~Ls~sl---lnDi~aIvlf~ll~ 766 (1173)
.|++...+++++...+..|=-.+=+.+|---.-..+---+..+.++ +|=+++|.++.-+.
T Consensus 260 ~gls~Gg~~llavLaASASYIAvPAAmR~AiPeAnpslyl~~SLgiTFPfNi~iGIPLY~~la 322 (327)
T PF05982_consen 260 LGLSPGGAVLLAVLAASASYIAVPAAMRAAIPEANPSLYLTASLGITFPFNILIGIPLYYALA 322 (327)
T ss_pred hCCCCccHHHHHHHHhhHhhhhhhHHHHhhCcccCchHHHHHHHhcccchhHhhccHHHHHHH
No 498
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=71.43 E-value=28 Score=38.46 Aligned_cols=125 Identities=17% Similarity=0.235 Sum_probs=74.6
Q ss_pred ccccc-ccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCccccCEEEEecCCCcc
Q 001051 1009 QDHII-LCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGA 1086 (1173)
Q Consensus 1009 k~hvI-IiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A~~VVi~t~Dd~~ 1086 (1173)
.++.| |.| ..-+|..+++.+.+.|..|+|--+++++.+..... .-.....++-..|-+.
T Consensus 4 tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~-------------------~p~~~t~v~Dv~d~~~ 64 (245)
T COG3967 4 TGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAE-------------------NPEIHTEVCDVADRDS 64 (245)
T ss_pred cCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhc-------------------Ccchheeeecccchhh
Confidence 45544 444 44589999999999999999999999988766443 1122233333333322
Q ss_pred hHHHHHHHHhhCCCceEEEEecChhhHHHHHHCCCCeeecCCcHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 001051 1087 NYRTVWALSKYFPNVKTFVRAHDIDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPASEIAATINEFRTRH 1161 (1173)
Q Consensus 1087 Ni~iv~~ar~l~p~~~IIara~d~e~~~~L~~aGAd~VI~p~~~aa~~LA~~vl~~l~~~~~ei~~~i~~~r~~~ 1161 (1173)
--.++..+++.+|++.++.-.-.-.....|. |++.-.- .....++-..+ =|.+-++.++.+++++.
T Consensus 65 ~~~lvewLkk~~P~lNvliNNAGIqr~~dlt--~~e~~~~---~~~~eI~~Nl~----API~Lt~~~lphl~~q~ 130 (245)
T COG3967 65 RRELVEWLKKEYPNLNVLINNAGIQRNEDLT--GAEDLLD---DAEQEIATNLL----APIRLTALLLPHLLRQP 130 (245)
T ss_pred HHHHHHHHHhhCCchheeeecccccchhhcc--CCcchhh---HHHHHHHHhhh----hHHHHHHHHHHHHHhCC
Confidence 2346778899999988877554444433343 5553321 12233333333 34444667777777653
No 499
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=71.37 E-value=5.8 Score=43.56 Aligned_cols=72 Identities=14% Similarity=0.058 Sum_probs=51.9
Q ss_pred cccccC-CCccHHHHHHHHHhCCCCeEEecCCchHHHhh----hhC--CCCEEEecCCCHHHHhhc------CccccCEE
Q 001051 1011 HIILCG-FGRVGQIIAQLLSERLIPFVALDVRSDRVAIG----RAL--DLPVYFGDAGSREVLHKV------GAERACAA 1077 (1173)
Q Consensus 1011 hvIIiG-~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l----~~~--g~~vi~GDasd~e~Le~a------gI~~A~~V 1077 (1173)
.++|.| .+.+|..+++.|.++|++|++++++++..+.+ +.. ...++.+|.++++.+.++ .....+.+
T Consensus 13 ~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~v 92 (256)
T PRK06124 13 VALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEHGRLDIL 92 (256)
T ss_pred EEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 445544 68899999999999999999999998765433 222 367889999999887643 11245677
Q ss_pred EEecC
Q 001051 1078 AITLD 1082 (1173)
Q Consensus 1078 Vi~t~ 1082 (1173)
|-..+
T Consensus 93 i~~ag 97 (256)
T PRK06124 93 VNNVG 97 (256)
T ss_pred EECCC
Confidence 65544
No 500
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=71.36 E-value=2.5 Score=50.29 Aligned_cols=64 Identities=22% Similarity=0.269 Sum_probs=0.0
Q ss_pred cccccCCCccHHHHHHHHHhCCCCeEEecCCchHHHhhhhCCCCEEEecCCCHHHHhhcCcccc
Q 001051 1011 HIILCGFGRVGQIIAQLLSERLIPFVALDVRSDRVAIGRALDLPVYFGDAGSREVLHKVGAERA 1074 (1173)
Q Consensus 1011 hvIIiG~G~~G~~Ia~~L~~~gi~VvVID~D~e~ve~l~~~g~~vi~GDasd~e~Le~agI~~A 1074 (1173)
+|+|+|.|..|..+|-.|.+.|++|+++|+.+.....-...+...+.-.+...++|+++|+.+.
T Consensus 6 dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~ 69 (405)
T PRK08850 6 DVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQG 69 (405)
T ss_pred CEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhh
Done!