Query 001052
Match_columns 1172
No_of_seqs 455 out of 3323
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 14:29:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001052.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001052hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02969 mam_aldehyde_ox alde 100.0 4E-233 8E-238 2245.3 115.5 1115 20-1170 2-1134(1330)
2 PLN02906 xanthine dehydrogenas 100.0 5E-232 1E-236 2236.9 116.0 1115 38-1170 1-1129(1319)
3 KOG0430 Xanthine dehydrogenase 100.0 7E-230 2E-234 2041.0 93.8 1074 19-1168 1-1087(1257)
4 PLN00192 aldehyde oxidase 100.0 2E-224 4E-229 2164.6 116.7 1083 18-1170 3-1159(1344)
5 PRK09800 putative hypoxanthine 100.0 7E-150 2E-154 1418.3 76.7 707 19-1160 1-790 (956)
6 TIGR03313 Se_sel_red_Mo probab 100.0 2E-147 4E-152 1398.1 74.4 689 23-1146 1-752 (951)
7 TIGR03311 Se_dep_Molyb_1 selen 100.0 4E-146 8E-151 1379.8 74.4 670 21-1141 1-680 (848)
8 COG4631 XdhB Xanthine dehydrog 100.0 1E-116 2E-121 982.4 43.1 551 605-1159 17-588 (781)
9 TIGR02965 xanthine_xdhB xanthi 100.0 2E-114 3E-119 1087.4 60.4 561 607-1170 1-583 (758)
10 COG4630 XdhA Xanthine dehydrog 100.0 1E-113 2E-118 929.0 33.4 475 18-566 6-482 (493)
11 TIGR03196 pucD xanthine dehydr 100.0 6E-111 1E-115 1053.4 59.2 534 606-1146 2-559 (768)
12 TIGR02963 xanthine_xdhA xanthi 100.0 2E-111 4E-116 1001.2 48.4 463 21-561 1-466 (467)
13 TIGR03194 4hydrxCoA_A 4-hydrox 100.0 2E-110 4E-115 1048.2 58.9 537 611-1159 1-571 (746)
14 PRK09970 xanthine dehydrogenas 100.0 2E-110 5E-115 1051.4 58.9 546 606-1160 2-589 (759)
15 TIGR02416 CO_dehy_Mo_lg carbon 100.0 8E-108 2E-112 1028.3 57.4 542 615-1160 1-603 (770)
16 COG1529 CoxL Aerobic-type carb 100.0 3.7E-81 8E-86 780.9 52.1 528 605-1147 4-536 (731)
17 PF02738 Ald_Xan_dh_C2: Molybd 100.0 7.8E-81 1.7E-85 763.6 41.5 400 747-1150 15-415 (547)
18 PRK09971 xanthine dehydrogenas 100.0 2.1E-57 4.7E-62 511.9 26.9 280 272-566 6-287 (291)
19 PRK09908 xanthine dehydrogenas 100.0 9.6E-55 2.1E-59 435.1 17.5 149 19-179 7-156 (159)
20 TIGR03195 4hydrxCoA_B 4-hydrox 100.0 1.1E-53 2.4E-58 481.6 27.7 277 270-563 4-320 (321)
21 TIGR03193 4hydroxCoAred 4-hydr 100.0 1.3E-54 2.8E-59 429.9 16.3 146 21-179 2-148 (148)
22 COG2080 CoxS Aerobic-type carb 100.0 2.8E-53 6E-58 418.6 16.1 151 18-180 1-152 (156)
23 TIGR03199 pucC xanthine dehydr 100.0 1.9E-52 4.2E-57 466.0 24.8 261 276-556 1-263 (264)
24 TIGR03198 pucE xanthine dehydr 100.0 9.1E-53 2E-57 420.8 16.0 147 20-180 3-150 (151)
25 COG1319 CoxM Aerobic-type carb 100.0 3.1E-51 6.7E-56 450.4 22.5 279 270-565 3-282 (284)
26 PRK11433 aldehyde oxidoreducta 100.0 6.9E-51 1.5E-55 426.1 17.9 152 16-180 47-214 (217)
27 PRK09799 putative oxidoreducta 100.0 4.6E-48 9.9E-53 427.8 24.5 250 272-565 4-254 (258)
28 TIGR03312 Se_sel_red_FAD proba 100.0 1.5E-47 3.2E-52 423.1 24.2 251 271-565 2-253 (257)
29 PF00941 FAD_binding_5: FAD bi 100.0 2E-40 4.2E-45 345.9 12.1 170 270-449 2-171 (171)
30 PF01799 Fer2_2: [2Fe-2S] bind 100.0 2.2E-31 4.8E-36 235.8 7.6 75 101-177 1-75 (75)
31 PF01315 Ald_Xan_dh_C: Aldehyd 100.0 3.6E-29 7.8E-34 242.0 9.3 107 621-728 1-111 (111)
32 PF03450 CO_deh_flav_C: CO deh 99.7 8.5E-18 1.8E-22 161.2 12.5 102 457-562 2-103 (103)
33 COG1529 CoxL Aerobic-type carb 99.6 2E-17 4.3E-22 208.3 -0.7 472 601-1140 179-716 (731)
34 PRK12386 fumarate reductase ir 99.0 5.2E-10 1.1E-14 123.1 7.7 69 28-107 20-93 (251)
35 PRK05950 sdhB succinate dehydr 98.5 1.3E-07 2.7E-12 104.2 5.8 68 28-107 18-91 (232)
36 PRK12576 succinate dehydrogena 98.3 1.3E-06 2.7E-11 98.6 8.5 69 28-107 25-100 (279)
37 TIGR00384 dhsB succinate dehyd 98.3 6.1E-07 1.3E-11 98.1 5.0 68 28-107 15-87 (220)
38 PF13510 Fer2_4: 2Fe-2S iron-s 98.2 2.8E-06 6.1E-11 78.0 6.9 69 19-102 2-80 (82)
39 cd00207 fer2 2Fe-2S iron-sulfu 98.0 1.1E-05 2.4E-10 74.0 5.9 69 21-91 1-77 (84)
40 PRK12814 putative NADPH-depend 98.0 1.9E-05 4.2E-10 99.9 10.1 93 19-131 2-101 (652)
41 PRK08493 NADH dehydrogenase su 97.9 1.6E-05 3.4E-10 101.3 7.5 96 21-133 2-102 (819)
42 PF13085 Fer2_3: 2Fe-2S iron-s 97.9 3.2E-05 6.9E-10 74.6 7.2 67 29-106 20-93 (110)
43 PF00111 Fer2: 2Fe-2S iron-sul 97.6 5.2E-05 1.1E-09 68.7 4.6 47 23-70 1-48 (78)
44 PRK07569 bidirectional hydroge 97.6 0.00014 3E-09 80.5 8.4 97 19-134 2-107 (234)
45 PRK12577 succinate dehydrogena 97.6 0.00068 1.5E-08 78.6 13.1 69 28-107 19-101 (329)
46 PRK12385 fumarate reductase ir 97.5 7.7E-05 1.7E-09 82.7 4.8 66 28-106 25-95 (244)
47 PRK14652 UDP-N-acetylenolpyruv 97.2 0.0021 4.6E-08 73.6 11.8 155 262-448 29-192 (302)
48 PRK13552 frdB fumarate reducta 97.1 0.00066 1.4E-08 75.1 5.8 68 28-107 24-96 (239)
49 PRK06259 succinate dehydrogena 97.1 0.0026 5.7E-08 78.1 11.6 62 29-103 22-88 (486)
50 PRK12436 UDP-N-acetylenolpyruv 97.1 0.0047 1E-07 70.9 12.4 149 270-449 37-195 (305)
51 PRK07570 succinate dehydrogena 97.0 0.00066 1.4E-08 75.4 4.6 69 28-106 20-103 (250)
52 PRK14653 UDP-N-acetylenolpyruv 96.9 0.007 1.5E-07 69.1 12.2 156 262-447 27-189 (297)
53 COG0479 FrdB Succinate dehydro 96.8 0.0017 3.7E-08 70.8 5.3 67 29-107 21-92 (234)
54 PRK08640 sdhB succinate dehydr 96.8 0.0013 2.8E-08 73.2 4.5 67 28-107 23-101 (249)
55 PRK12575 succinate dehydrogena 96.7 0.0025 5.4E-08 70.3 5.8 66 28-106 23-93 (235)
56 PRK07860 NADH dehydrogenase su 96.6 0.0032 6.9E-08 81.7 7.6 99 19-133 3-109 (797)
57 PRK13905 murB UDP-N-acetylenol 96.6 0.011 2.4E-07 67.8 11.2 158 262-450 24-191 (298)
58 PRK10713 2Fe-2S ferredoxin Yfa 96.6 0.0042 9.2E-08 57.4 5.8 48 20-70 3-50 (84)
59 PF01565 FAD_binding_4: FAD bi 96.6 0.0082 1.8E-07 60.5 8.4 103 272-394 3-109 (139)
60 TIGR00179 murB UDP-N-acetyleno 96.5 0.013 2.9E-07 66.6 10.9 161 262-448 6-172 (284)
61 PLN00129 succinate dehydrogena 96.5 0.003 6.4E-08 70.9 5.4 67 29-107 63-135 (276)
62 PRK14650 UDP-N-acetylenolpyruv 96.5 0.028 6E-07 64.2 13.1 158 261-449 25-192 (302)
63 CHL00134 petF ferredoxin; Vali 96.5 0.0049 1.1E-07 58.8 5.8 43 26-70 13-55 (99)
64 PTZ00305 NADH:ubiquinone oxido 96.5 0.0094 2E-07 66.6 8.7 97 18-132 66-171 (297)
65 TIGR02008 fdx_plant ferredoxin 96.4 0.0063 1.4E-07 57.8 5.7 43 26-70 11-53 (97)
66 PRK13906 murB UDP-N-acetylenol 96.3 0.028 6E-07 64.7 11.9 152 269-448 36-194 (307)
67 PRK09129 NADH dehydrogenase su 95.9 0.011 2.4E-07 76.7 6.4 104 21-140 2-111 (776)
68 COG0277 GlcD FAD/FMN-containin 95.8 0.015 3.1E-07 70.8 6.9 104 271-394 33-140 (459)
69 TIGR01973 NuoG NADH-quinone ox 95.7 0.012 2.6E-07 74.2 5.9 97 23-134 1-103 (603)
70 PRK09130 NADH dehydrogenase su 95.7 0.023 5E-07 72.5 8.0 94 21-133 2-105 (687)
71 PLN03136 Ferredoxin; Provision 95.5 0.022 4.8E-07 58.1 5.6 48 20-69 56-103 (148)
72 PTZ00038 ferredoxin; Provision 95.4 0.031 6.8E-07 59.2 6.6 48 20-70 97-145 (191)
73 PRK11872 antC anthranilate dio 95.4 0.02 4.4E-07 66.9 5.6 47 21-69 3-52 (340)
74 TIGR00387 glcD glycolate oxida 95.2 0.11 2.4E-06 62.5 11.4 100 274-392 2-105 (413)
75 PRK11183 D-lactate dehydrogena 95.2 0.046 1E-06 66.3 8.0 107 270-393 39-152 (564)
76 PRK00046 murB UDP-N-acetylenol 95.2 0.16 3.4E-06 59.0 11.9 154 262-449 14-186 (334)
77 TIGR01676 GLDHase galactonolac 95.2 0.062 1.4E-06 65.9 9.1 102 270-393 62-167 (541)
78 TIGR01678 FAD_lactone_ox sugar 95.1 0.063 1.4E-06 64.9 8.8 102 271-394 16-121 (438)
79 PLN02465 L-galactono-1,4-lacto 95.1 0.11 2.5E-06 64.1 11.0 103 270-394 97-203 (573)
80 PRK08166 NADH dehydrogenase su 94.9 0.039 8.4E-07 72.5 6.7 102 21-133 2-109 (847)
81 PRK13903 murB UDP-N-acetylenol 94.8 0.13 2.9E-06 60.3 10.2 155 261-448 25-193 (363)
82 PTZ00490 Ferredoxin superfamil 94.7 0.059 1.3E-06 54.7 6.1 84 20-104 35-138 (143)
83 PRK14649 UDP-N-acetylenolpyruv 94.5 0.21 4.5E-06 57.3 10.5 157 261-448 13-189 (295)
84 PLN02593 adrenodoxin-like ferr 94.4 0.053 1.2E-06 53.4 4.8 48 20-69 2-51 (117)
85 TIGR02160 PA_CoA_Oxy5 phenylac 94.3 0.068 1.5E-06 62.8 6.3 51 19-70 263-313 (352)
86 PRK11230 glycolate oxidase sub 94.2 0.13 2.9E-06 63.3 8.6 103 271-392 57-163 (499)
87 PRK14651 UDP-N-acetylenolpyruv 94.0 0.44 9.5E-06 53.8 11.5 154 262-450 14-169 (273)
88 PRK14648 UDP-N-acetylenolpyruv 94.0 0.46 9.9E-06 55.4 11.9 85 261-349 22-112 (354)
89 COG0812 MurB UDP-N-acetylmuram 93.9 0.75 1.6E-05 52.1 13.1 159 262-450 14-182 (291)
90 PRK10684 HCP oxidoreductase, N 93.8 0.069 1.5E-06 62.3 5.1 49 20-70 248-296 (332)
91 COG0633 Fdx Ferredoxin [Energy 93.6 0.098 2.1E-06 50.2 4.8 47 24-71 8-54 (102)
92 TIGR01677 pln_FAD_oxido plant- 93.5 0.43 9.2E-06 59.4 11.4 81 271-351 33-118 (557)
93 PRK07609 CDP-6-deoxy-delta-3,4 93.4 0.078 1.7E-06 62.0 4.6 47 20-70 4-50 (339)
94 TIGR01679 bact_FAD_ox FAD-link 93.2 0.17 3.7E-06 61.0 7.2 77 271-351 13-90 (419)
95 TIGR02007 fdx_isc ferredoxin, 93.2 0.12 2.6E-06 50.3 4.6 42 25-70 13-55 (110)
96 PRK05464 Na(+)-translocating N 92.9 0.11 2.5E-06 62.3 5.0 53 16-70 31-85 (409)
97 PLN02805 D-lactate dehydrogena 92.4 0.31 6.8E-06 60.6 8.0 101 271-392 135-239 (555)
98 PRK05713 hypothetical protein; 92.3 0.18 3.9E-06 58.3 5.5 45 22-70 3-47 (312)
99 TIGR01941 nqrF NADH:ubiquinone 91.8 0.18 3.9E-06 60.5 4.9 50 19-70 30-81 (405)
100 COG1034 NuoG NADH dehydrogenas 91.5 0.26 5.6E-06 62.1 5.9 98 21-133 2-104 (693)
101 PRK09970 xanthine dehydrogenas 91.5 3 6.6E-05 54.2 15.8 192 781-974 457-737 (759)
102 COG3383 Uncharacterized anaero 91.3 0.37 7.9E-06 59.7 6.6 98 19-133 4-106 (978)
103 TIGR03194 4hydrxCoA_A 4-hydrox 91.1 4.2 9E-05 52.8 16.4 59 783-842 443-512 (746)
104 PRK09800 putative hypoxanthine 90.9 4.8 0.0001 53.5 16.8 191 782-974 662-937 (956)
105 PRK11282 glcE glycolate oxidas 90.5 0.65 1.4E-05 54.5 7.6 95 279-393 7-102 (352)
106 TIGR03313 Se_sel_red_Mo probab 90.0 4.8 0.0001 53.5 15.8 191 782-974 658-933 (951)
107 TIGR03311 Se_dep_Molyb_1 selen 89.0 5 0.00011 52.8 14.7 183 784-975 594-835 (848)
108 PLN02441 cytokinin dehydrogena 88.5 3.5 7.5E-05 51.0 12.0 77 270-349 65-153 (525)
109 KOG2282 NADH-ubiquinone oxidor 87.8 0.87 1.9E-05 54.0 5.9 100 18-133 30-135 (708)
110 TIGR03196 pucD xanthine dehydr 86.2 30 0.00065 45.2 19.3 185 786-974 467-755 (768)
111 PRK13904 murB UDP-N-acetylenol 84.6 2.8 6.1E-05 47.0 7.7 144 262-449 12-157 (257)
112 TIGR02416 CO_dehy_Mo_lg carbon 75.0 5.8 0.00013 51.7 7.1 70 785-857 476-556 (770)
113 TIGR01372 soxA sarcosine oxida 71.8 8.4 0.00018 51.8 7.7 81 16-106 8-98 (985)
114 TIGR02965 xanthine_xdhB xanthi 68.8 10 0.00022 49.5 7.2 59 783-842 446-515 (758)
115 PF02594 DUF167: Uncharacteris 65.6 22 0.00048 32.4 6.7 52 1057-1108 18-69 (77)
116 PRK08053 sulfur carrier protei 65.5 13 0.00028 32.6 5.0 38 21-71 1-38 (66)
117 PF02738 Ald_Xan_dh_C2: Molybd 65.1 20 0.00044 44.9 8.7 48 1052-1104 48-95 (547)
118 PRK07440 hypothetical protein; 62.8 12 0.00025 33.5 4.3 29 20-51 4-32 (70)
119 TIGR02969 mam_aldehyde_ox alde 60.4 15 0.00033 50.7 6.8 60 782-842 1015-1085(1330)
120 TIGR02911 sulfite_red_B sulfit 60.2 5.1 0.00011 45.1 2.0 28 41-68 205-240 (261)
121 PLN02906 xanthine dehydrogenas 58.6 21 0.00045 49.5 7.6 60 782-842 1010-1080(1319)
122 PRK06083 sulfur carrier protei 58.5 18 0.00039 33.5 4.9 33 16-51 14-46 (84)
123 COG2104 ThiS Sulfur transfer p 57.7 16 0.00034 32.6 4.1 32 19-53 1-32 (68)
124 PRK05863 sulfur carrier protei 57.6 13 0.00029 32.5 3.7 28 21-51 1-28 (65)
125 PRK00054 dihydroorotate dehydr 55.3 4.7 0.0001 45.0 0.6 31 41-71 196-231 (250)
126 cd06221 sulfite_reductase_like 53.4 7.5 0.00016 43.5 1.9 28 41-68 205-240 (253)
127 PRK05659 sulfur carrier protei 52.3 17 0.00038 31.6 3.6 29 22-53 2-30 (66)
128 PF10418 DHODB_Fe-S_bind: Iron 52.2 8.2 0.00018 30.6 1.3 19 53-71 2-20 (40)
129 cd06192 DHOD_e_trans_like FAD/ 51.6 8.6 0.00019 42.6 2.0 18 53-70 212-229 (243)
130 PRK08364 sulfur carrier protei 50.8 35 0.00076 30.3 5.3 41 20-71 4-46 (70)
131 PF10437 Lip_prot_lig_C: Bacte 48.8 88 0.0019 28.8 7.9 50 474-529 19-68 (86)
132 TIGR01683 thiS thiamine biosyn 47.6 32 0.00069 29.9 4.5 36 23-71 1-36 (64)
133 PF08869 XisI: XisI protein; 47.6 20 0.00043 35.0 3.4 38 1056-1103 56-97 (111)
134 PRK07696 sulfur carrier protei 43.9 30 0.00066 30.5 3.8 28 22-51 2-29 (67)
135 PRK06944 sulfur carrier protei 41.0 31 0.00067 29.8 3.4 27 22-51 2-28 (65)
136 PRK08221 anaerobic sulfite red 39.6 11 0.00023 42.6 0.3 28 41-68 207-242 (263)
137 PLN00192 aldehyde oxidase 39.5 66 0.0014 44.8 7.8 59 1052-1121 761-819 (1344)
138 COG2871 NqrF Na+-transporting 39.3 32 0.00069 38.7 3.8 50 19-70 35-86 (410)
139 cd00565 ThiS ThiaminS ubiquiti 38.4 65 0.0014 28.0 5.0 36 23-71 2-37 (65)
140 KOG3049 Succinate dehydrogenas 37.1 13 0.00028 39.7 0.5 46 38-93 76-126 (288)
141 cd06219 DHOD_e_trans_like1 FAD 36.8 18 0.00038 40.4 1.5 31 41-71 195-230 (248)
142 PRK08345 cytochrome-c3 hydroge 36.5 21 0.00045 40.9 2.0 31 41-71 227-265 (289)
143 PRK00647 hypothetical protein; 35.3 87 0.0019 29.9 5.5 46 1063-1108 25-70 (96)
144 PTZ00397 macrophage migration 31.9 45 0.00097 32.6 3.3 30 1079-1108 76-105 (116)
145 PRK05802 hypothetical protein; 31.8 28 0.0006 40.5 2.1 20 52-71 287-306 (320)
146 cd06220 DHOD_e_trans_like2 FAD 30.7 23 0.00049 39.0 1.1 30 41-70 182-216 (233)
147 KOG4730 D-arabinono-1, 4-lacto 30.3 70 0.0015 38.5 4.9 77 271-351 51-131 (518)
148 PRK05090 hypothetical protein; 29.9 1.2E+02 0.0026 28.9 5.6 46 1063-1108 30-75 (95)
149 PRK06488 sulfur carrier protei 29.8 59 0.0013 28.3 3.3 27 21-51 1-27 (65)
150 COG3894 Uncharacterized metal- 29.1 59 0.0013 39.5 4.1 48 20-72 3-51 (614)
151 PRK01530 hypothetical protein; 28.3 1.2E+02 0.0027 29.4 5.4 45 1064-1108 38-82 (105)
152 PTZ00450 macrophage migration 26.6 51 0.0011 32.3 2.6 48 1056-1108 58-105 (113)
153 PRK06222 ferredoxin-NADP(+) re 24.0 54 0.0012 37.3 2.6 30 41-70 196-230 (281)
154 PF03990 DUF348: Domain of unk 23.6 1.3E+02 0.0028 24.1 3.9 29 21-51 2-30 (43)
155 KOG3309 Ferredoxin [Energy pro 22.1 1.9E+02 0.004 29.9 5.5 49 19-71 44-96 (159)
156 PRK12775 putative trifunctiona 21.8 61 0.0013 43.8 2.8 31 41-71 196-231 (1006)
157 PF06971 Put_DNA-bind_N: Putat 21.3 76 0.0016 26.5 2.2 17 966-982 32-48 (50)
158 PF02594 DUF167: Uncharacteris 20.2 2.4E+02 0.0053 25.7 5.5 43 786-829 17-64 (77)
No 1
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=100.00 E-value=3.5e-233 Score=2245.34 Aligned_cols=1115 Identities=41% Similarity=0.705 Sum_probs=1008.3
Q ss_pred EEEEEECCEEEEecCCCCCCcHHHHHhhC-CCCCcccCccCCCCCceEEEEeccccCCCcccceeecccccchhccCCce
Q 001052 20 EAILYVNGLRKVLPDGLAHLTLLEYLRDI-GLTGTKLGCGEGGCGACTVMVSRYDKKSKKCVHCAVNACLAPLYSLEGMH 98 (1172)
Q Consensus 20 ~i~~~~Ng~~~~~~~~~p~~~L~~~LR~~-~l~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~ 98 (1172)
.|+|+|||+++++.+++|+++||+|||++ ||||||.||++|+||||||+||++|+.+|++.+++|||||+|+++++|++
T Consensus 2 ~~~~~~Ng~~~~~~~~~~~~~ll~~LR~~~~l~gtk~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~ 81 (1330)
T TIGR02969 2 ELLFYVNGRKVVEKNVDPETMLLPYLRKKLRLTGTKYGCGGGGCGACTVMISRYNPSTKSIRHHPVNACLTPICSLYGAA 81 (1330)
T ss_pred cEEEEECCEEEEeccCCCCCcHHHHHHhhcCCCCCCCCcCCCCCCCcEEEECCccccccccCCcEEehhHHHHHHhCCCE
Confidence 58899999998665699999999999996 99999999999999999999999999999999999999999999999999
Q ss_pred EEEeecccCCCCCcCHHHHHHHHhCCCCCCCCchHHHHHHHHHHHhCCCCCCHHHHHHHhhcCccccCCChhHHHHHHHH
Q 001052 99 VITVEGVGNRKHGLHPIQESLVRSHGSQCGFCTPGFIMSMYSLLRSSQTPPTEEQIEESLAGNLCRCTGYRPIVDAFRVF 178 (1172)
Q Consensus 99 i~T~Egl~~~~~~~~~iq~a~~~~~~~qCG~CtpG~vm~~~~ll~~~~~~~~~~~i~~~l~gnlCRCtgy~~i~~a~~~~ 178 (1172)
|+|||||++..+.|||||+||+++|++|||||||||||++++||++++.| +++||+++|+|||||||||++|++|++++
T Consensus 82 v~TvEgl~~~~~~l~pvq~a~~~~~~~QCGfCtpG~vm~~~~ll~~~~~p-~~~~i~~~l~gnlCRCtgY~~i~~a~~~~ 160 (1330)
T TIGR02969 82 VTTVEGIGSTRTRLHPVQERIAKCHGTQCGFCTPGMVMSMYALLRNHPEP-TLDQLTDALGGNLCRCTGYRPIIDACKTF 160 (1330)
T ss_pred EEecCCcCCCCCCCCHHHHHHHHcCCCcCCCCchHHHHHHHHHHHcCCCC-CHHHHHHHhcCCcccCCCCHHHHHHHHHH
Confidence 99999998435689999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HhccccccccCCcccccCCccccCCCCCCCCCCCCCC--C-CCcccccccccCCccccccccccCCCCCCCC-CcCCChh
Q 001052 179 AKTNDALYTNMSSMSLKEGEFVCPSTGKPCSCGMKNV--S-NADTCEKSVACGKTYEPVSYSEIDGSTYTEK-ELIFPPE 254 (1172)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~c~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~~p~~ 254 (1172)
+.+.. ||..+.+ ..||.+++ + .++. ..+....-.++.+++.+|++. ++|||++
T Consensus 161 ~~~~~----------------~~~~~~~-~~~c~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~fp~~ 217 (1330)
T TIGR02969 161 CKTSG----------------CCQSKEN-GVCCLDQGINGLPEFE------EGDETSPELFSEEEFLPLDPTQELIFPPE 217 (1330)
T ss_pred hhccC----------------Cchhccc-cCcccccccccccccc------ccccccccccchhcccCCCccccccCChh
Confidence 86521 2222111 12332110 0 0000 000000114556778889988 9999999
Q ss_pred hhcc-C--CCC-ccccCCCCceEEecCCHHHHHHHHhhCCCcEEEeccCcceeeeeeccccCceEEecCCcccccceeec
Q 001052 255 LLLR-K--SNP-LNLSGFGGLKWYRPLKLQHLLELKSKYPDSKLLVGNTEVGIEMRLKRMQYQVLISVTHVPELNVLNVK 330 (1172)
Q Consensus 255 l~~~-~--~~~-~~~~~~~~~~~~~P~sl~eal~ll~~~~~a~lvaGgTdl~v~~k~~~~~~~~lIdl~~v~EL~~I~~~ 330 (1172)
|+.. + +.+ +.+.+ ++.+|++|+||+||+++|+++|++++|||||||+++++++...++.+|||++|+||+.|+.+
T Consensus 218 l~~~~~~~~~~~~~~~~-~~~~~~~P~tl~ea~~ll~~~~~a~lvAGGTdl~~~~k~~~~~~~~lIdi~~I~EL~~i~~~ 296 (1330)
T TIGR02969 218 LMRMAEKQPQRTRVFYS-ERMMWISPVTLKELLEAKFKYPQAPVVMGNTSVGPEVKFKGVFHPVIISPDRIEELSVVNHT 296 (1330)
T ss_pred HhhcccccccceeeecC-CCceEECCCCHHHHHHHHHhCCCCEEEecCcchHHHhhhccCCCCeEEECCCChhhhcEEEc
Confidence 9854 1 223 55555 56799999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEcccccHHHHHHHHHHhhhcCCCCccchHHHHHHHHHHhccccccccccccccccccCCCCChhHHHHhcCCEEE
Q 001052 331 DDGLEIGAAVRLTELLKMFRKVVTERPAHETSSCKAFIEQIKWFAGTQIKNVASVGGNICTASPISDLNPLWMASGAKFH 410 (1172)
Q Consensus 331 ~~~l~IGA~vTl~~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp~sD~~~~Llal~A~v~ 410 (1172)
+++|+|||+|||++|++.|.+.+.+++....+.++.|++++++|||+||||+||||||||++||+||++|+|+||||+|+
T Consensus 297 ~~~l~IGA~vT~~el~~~l~~~i~~~p~~~~~~~p~L~~a~~~ias~qIRN~gTlGGNi~~asP~sD~~p~LlAl~A~v~ 376 (1330)
T TIGR02969 297 GDGLTLGAGLSLAQVKDILADVVQKLPEETTQTYRALLKHLGTLAGSQIRNMASLGGHIISRHLDSDLNPLLAVGNCTLN 376 (1330)
T ss_pred CCEEEEeccccHHHHHHHHHHhhhcCchhhhHHHHHHHHHHHHhCChhhcccccchhhcccCCCchhHHHHHHHcCcEEE
Confidence 99999999999999999988888766665567899999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCeEEEehHhhh-cccccccCCCCeEEEEEEccCCCCccceeeeeecccCccccceeeeEEEEEEe-cCCcceEE
Q 001052 411 IVDCKGNIRTTMAEEFF-LGYRKVDLTSGEILLSIFLPWTRPFEFVKEFKQAHRRDDDIALVNAGMRVYLE-EKDEEWVV 488 (1172)
Q Consensus 411 l~s~~g~~R~vpl~dF~-~g~~~t~L~~~Eil~~I~iP~~~~~~~~~~~K~~~R~~~dia~v~~A~~~~~~-~~~~~~~i 488 (1172)
|.+.+| +|+||++||| .+|++|+|+++|||++|+||.+..+.++++||+++|+++|||+||+|+.++++ +++ +|
T Consensus 377 l~s~~g-~R~vpl~dff~~~~~~t~L~~~Eil~~I~iP~~~~~~~~~~~K~~~R~~~dia~V~~A~~v~l~~~~~---~i 452 (1330)
T TIGR02969 377 LLSKEG-KRQIPLSEQFLSKCPDADLKPQEILVSVNIPYSRKWEFVSAFRQAQRQQNALAIVNSGMRVFFGEGDG---II 452 (1330)
T ss_pred EecCCc-eEEEehHHhhhcccccccCCCCceEEEEEecCCCCccceeEEEEcCCccccHHHhhheEEEEEEcCCC---EE
Confidence 999999 9999999988 68999999999999999999876666788999999999999999999999996 456 89
Q ss_pred EEEEEEEccCCCccccHHHHHHHhcCCCCCHHHHHHHHHhhccccccCCCCCCCChhHHHHHHHHHHHHHHHHHhhhccC
Q 001052 489 SDALLVYGGVAPLSLSAKKTKTFIVGKSWSQELLQNALKILQTDIILKEDAPGGMVDFRKSLTLSFFFKFFLWVSHQMEG 568 (1172)
Q Consensus 489 ~~~ria~Ggv~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~e~~~~~~~~~~saeYR~~la~~L~~r~l~~~~~~~~~ 568 (1172)
+++||+||||+|+|+|+.++|++|.||+|+++++++|++++.+++.|+.+++++|++||++|+.+||+|||.++..++..
T Consensus 453 ~~aria~Ggvap~p~ra~~~E~~L~Gk~~~~~~~~~A~~~l~~~~~p~~~d~r~sa~YRr~la~~ll~kf~~~~~~~~~~ 532 (1330)
T TIGR02969 453 RELSISYGGVGPTTICAKNSCQKLIGRPWNEEMLDTACRLILDEVSLAGSAPGGKVEFKRTLIISFLFKFYLEVSQILKR 532 (1330)
T ss_pred eEEEEEEEcCcCceecHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999999999999999988777789999999999999999999999987742
Q ss_pred CC-CcccCCCcccccccccccCCCccccccccccC----CCCccCCcccccCccccccceeeccccCCCCCCcEEEEEEe
Q 001052 569 KN-SIKESVPSTHLSAMQSFHRPSIIGNQDYEITK----HGTSVGSPEVHLSSRLQVTGEAEYTDDTPMPPNCLHAALVL 643 (1172)
Q Consensus 569 ~~-~~~~~~~~~~~s~~~~~~r~~~~~~q~~~~~~----~~~~vG~~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vr 643 (1172)
.+ ...+.+++.+.|+.+.++||+++|.|.|+... ..++|||+++|+|+..||||+++|++|++.+|||||+++||
T Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGk~v~r~d~~~kvtG~a~Y~~Di~~~pgmL~a~~vr 612 (1330)
T TIGR02969 533 MDPGHYPSLADKYESALEDLHSKHHWSTLKHQNVDSMQLPQDPIGHPIMHLSGVKHATGEAIYCDDMPAVDQELFLTFVT 612 (1330)
T ss_pred ccccccccCChhhccccccccCCCCccccceecccccccccCcCCCCCcChhhHhhccccccccCCCCCCCCCEEEEEEe
Confidence 11 12335677888999999999999999998422 22789999999999999999999999998337999999999
Q ss_pred cCCCCeEeeccChhhhccCCCEEEEEecCCCCCCCCCCCCCCCccccccCeEEecCCeEEEEEECCHHHHHHhcccCeeE
Q 001052 644 SRRPHARILSIDDSGARSSPGFVGIFFAEDVQGDNRIGPVVADEELFASEVVTCVGQVIGVVVAETHEEAKLASRKVQVE 723 (1172)
Q Consensus 644 Sp~a~a~I~sID~s~A~~~pGVv~Vvt~~Dipg~n~~~~~~~d~~~la~~~V~y~GqpVa~VvAet~~~A~~Aa~~V~V~ 723 (1172)
||++||||++||+++|++||||++|+|++|+|+.|.++ ++++|++++|+|+|||||+|||+|+++|++|+++|+|+
T Consensus 613 Sp~ahArI~sID~s~A~~~pGV~~V~t~~Dvp~~~~~~----~~~~la~~~Vr~~Gqpva~VvAet~~~A~~Aa~~V~Ve 688 (1330)
T TIGR02969 613 SSRAHAKIVSIDLSEALSLPGVVDIITAEHLQDANTFG----TEKLLATDKVHCVGQLVCAVIADSEVQAKQAAKHVKIV 688 (1330)
T ss_pred cCCCceEEEeeeHHHHhcCCCeEEEEeHHHCCCCCCCC----CeeecCCCeEEEcCCeEEEEEECCHHHHHHHhcCCEEE
Confidence 99999999999999999999999999999999765543 78999999999999999999999999999999999999
Q ss_pred EecC-CccCCHHHHhhcCCCCCCCccccccCCcccccccCCCcEEEEEEEEECcccccCCCCCeEEEEEecCCCeEEEEe
Q 001052 724 YEEL-PAILSIQEAIDAKSFHPNTERCFRKGDVDICFQSGQCDKIIEGEVRVGGQEHFYLEPHSSVVWTMDHGNEVHMIS 802 (1172)
Q Consensus 724 ye~l-p~v~~~~~A~~~~a~~~~~~~~~~~Gd~e~af~~~~a~~vve~~y~~~~~~H~~mEp~~a~A~~~~~~g~l~V~~ 802 (1172)
||+| |+++|+++|+++++++. ....+.+||++++| ++|+++||++|++++|+|+||||++|+|+|++++|+|+||+
T Consensus 689 Ye~l~~~v~d~~~Al~~~a~~~-~~~~~~~Gdv~~af--~~a~~vve~~y~~~~~~H~~mEp~~~~A~~~~~~g~l~V~~ 765 (1330)
T TIGR02969 689 YRDLEPLILTIEEAIQHKSFFE-PERKLEYGNVDEAF--KVVDQILEGEIHMGGQEHFYMETQSMLVVPKGEDQEMDVYV 765 (1330)
T ss_pred EecCCCCcCCHHHHhcCCCEec-ccccccCCchhhhh--ccCCEEEEEEEEECCEeecccCCCEEEEEEeCCCCeEEEEE
Confidence 9999 56799999999887554 33456899999999 99999999999999999999999999999984457899999
Q ss_pred CCCChHHHHHHHHHHhCCCCccEEEEeCccCCCCCCCCCcchHHHHHHHHHHHhCCCCEEEEeChhhhhhhcCCCCceEE
Q 001052 803 STQAPQKHQKYVSHVLGLPMSKVVCKTKRIGGGFGGKETRSAFIAAAAAVPSFLLNRPVNLTLDRDIDMMISGQRHSFLG 882 (1172)
Q Consensus 803 stQ~p~~~r~~vA~~Lglp~~kV~V~~~~vGGgFG~K~~~~~~~~~~aAlaA~k~gRPVkl~~tR~E~~~~~~~R~~~~~ 882 (1172)
|||+|+.+|..+|++||||++||||+++++|||||+|.+....+++.||++|+++||||||+|+|+|+|+.+++||++.+
T Consensus 766 stQ~p~~~r~~vA~~Lglp~~kVrV~~~~vGGgFG~K~~~~~~~~~~aA~aA~~~gRPVk~~~sR~e~~~~~~~R~~~~~ 845 (1330)
T TIGR02969 766 STQFPKYIQDIVAATLKLPVNKVMCHVRRVGGAFGGKVGKTSIMAAITAFAANKHGRAVRCTLERGEDMLITGGRHPYLG 845 (1330)
T ss_pred CCcCHHHHHHHHHHHhCCCHHHeEEEeCCcccCcccccccccHHHHHHHHHHHHhCCCEEEEecHHHHhhhcCCcCceEE
Confidence 99999999999999999999999999999999999999864455789999999999999999999999999999999999
Q ss_pred EEEEeeCCCCcEEEEEEeEEecCCCCCCchHHHHHHHhhccCCCCCCCeEEEEEEEEecCCCCCCccCCCChhhhHHHHH
Q 001052 883 KYKVGFTNEGKVLALDLEIYNNAGNSLDLSLAVLERAMFHSDNVYEIPNVRIMGNVCFTNFPSNTAFRGFGGPQGMLITE 962 (1172)
Q Consensus 883 ~~k~g~d~dG~i~a~~~~~~~d~Ga~~~~s~~v~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~RG~G~~q~~fa~E 962 (1172)
+||+|+|+||+|+|++++++.|+|+|.+.+..++.++..++.++|+|||++++++.|+||+||++||||||.+|++|++|
T Consensus 846 ~~k~g~~~dG~i~a~~~~~~~d~Ga~~~~~~~v~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~~a~RG~G~~q~~fa~E 925 (1330)
T TIGR02969 846 KYKAGFMNDGRIVALDVEHYSNGGSSLDESLWVIEMGLLKMDNAYKFPNLRCRGWACRTNLPSNTAFRGFGFPQAGLITE 925 (1330)
T ss_pred EEEEEECCCCCEEEEEEEEEEecccccCcchHHHHHHHHhcCCCccCCcEEEEEEEEECCCCCCCccCCCchHHHHHHHH
Confidence 99999999999999999999999999988877778888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHhcCCCCCcccccccccCCCHHHHHHHHHhhcChHhhHHHHhhcccCCCcceeeeEEeeee
Q 001052 963 NWIQRVAVEVRKSPEEIREINFQGEGSILHYGQQLQHCTLFPLWNELKLSCDFLNARKEVDNFNLNNRWKKRGIAMVPTK 1042 (1172)
Q Consensus 963 s~mDelA~~lg~DP~e~R~~Nl~~~g~~~~~g~~~~~~~l~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~grGia~~~~~ 1042 (1172)
++||++|++|||||+|||++|++++|+.+++++++++..+++||+++++.++|++|+++++.||+.++|++||+|+++..
T Consensus 926 ~~mD~lA~~lg~DP~e~R~~N~~~~gd~~p~~~~~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~rGiG~a~~~ 1005 (1330)
T TIGR02969 926 ACITEVAAKCGLSPEKVRTINMYKEIDQTPYKQEINAKNLFQCWRECMAKSSYSERKVAVEKFNAENYWKKRGLAVIPLK 1005 (1330)
T ss_pred HHHHHHHHHHCcCHHHHHHHhCCCCcccCCCCcccCCCcHHHHHHHHHHhcCHHHHHHHHHHHhccCCCeEEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999888878888889999999999999
Q ss_pred cccccccccccccceEEEEeeCCeEEEEeCCccCCCChHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCCccCcccchhH
Q 001052 1043 FGISFTLKLMNQAGALVHVYTDGTVLVTHGGVEMGQGLHTKVAQVAASAFNIPLSSVFVSETSTDKVPNASPTAASASSD 1122 (1172)
Q Consensus 1043 ~g~~~~~~~~~~~~a~V~v~~DGsV~V~~g~~e~GQG~~T~~~QIaAe~Lgip~e~V~v~~~dT~~~p~~~~t~~Sr~t~ 1122 (1172)
++.+++....+++.|.|+|++||+|+|.+|++|||||++|+++||||++||||+|+|+|..+||+.+|++++|+|||+|+
T Consensus 1006 ~~~~~~~~~~~~~~a~v~i~~DGsV~V~~G~~e~GQG~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~gt~gSr~t~ 1085 (1330)
T TIGR02969 1006 FPVGLGSVAMGQAAALVHIYLDGSVLVTHGGIEMGQGVHTKMIQVVSRELKMPMSNVHLRGTSTETVPNTNASGGSVVAD 1085 (1330)
T ss_pred eccccccCCCCCccEEEEEcCCceEEEEECCcCcCCChHHHHHHHHHHHhCCCHHHEEEEcCCCCCCCCCCCCchHHHHH
Confidence 98776543456788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhc-cccceeEEee
Q 001052 1123 IYGAAVLDACEQIKARMEPIASKHNFNSFAEKIIMFCN-ILSSQVHVMF 1170 (1172)
Q Consensus 1123 ~~g~Av~~A~~~Lr~rL~~~aa~~~~~~w~~~i~~~~~-~~~~~~~~~~ 1170 (1172)
+.|.||++||++||+||+++++++++.+|.+++..+++ .+++..++.|
T Consensus 1086 ~~G~Av~~A~~~l~~rl~~~aa~~~~~~~~~~~~~~~~~~~~l~~~~~~ 1134 (1330)
T TIGR02969 1086 LNGLAVKDACQTLLKRLEPIISKNPQGTWKDWAQTAFDQSISLSAVGYF 1134 (1330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHhhccCCCceEEEEEe
Confidence 99999999999999999999998888999999975653 3555555543
No 2
>PLN02906 xanthine dehydrogenase
Probab=100.00 E-value=5.5e-232 Score=2236.90 Aligned_cols=1115 Identities=79% Similarity=1.263 Sum_probs=1009.5
Q ss_pred CCcHHHHHhhCCCCCcccCccCCCCCceEEEEeccccCCCcccceeecccccchhccCCceEEEeecccCCCCCcCHHHH
Q 001052 38 HLTLLEYLRDIGLTGTKLGCGEGGCGACTVMVSRYDKKSKKCVHCAVNACLAPLYSLEGMHVITVEGVGNRKHGLHPIQE 117 (1172)
Q Consensus 38 ~~~L~~~LR~~~l~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~T~Egl~~~~~~~~~iq~ 117 (1172)
+++||+|||+.||||||.||++|+||||||+||++|+.+|+++|++|||||+|+++++|++|+|||||++..+.|||||+
T Consensus 1 ~~~ll~~LR~~~l~g~k~gC~~g~CGaCtv~~~~~~~~~~~~~~~~v~sC~~~~~~~~g~~i~Tvegl~~~~~~~~~vq~ 80 (1319)
T PLN02906 1 HQTLLEYLRDLGLTGTKLGCGEGGCGACTVMVSHYDRKTGKCVHYAVNACLAPLYSVEGMHVITVEGIGNRRDGLHPVQE 80 (1319)
T ss_pred CCcHHHHHHhCCCCCCCCCcCCCCCCCeEEEECCccccCCccCCeEehhhHHHHHHhCCCEEEecCCCCCCCCCCCHHHH
Confidence 47999999999999999999999999999999999988899999999999999999999999999999844578999999
Q ss_pred HHHHhCCCCCCCCchHHHHHHHHHHHhCC-CCCCHHHHHHHhhcCccccCCChhHHHHHHHHHhcccc----ccccCCcc
Q 001052 118 SLVRSHGSQCGFCTPGFIMSMYSLLRSSQ-TPPTEEQIEESLAGNLCRCTGYRPIVDAFRVFAKTNDA----LYTNMSSM 192 (1172)
Q Consensus 118 a~~~~~~~qCG~CtpG~vm~~~~ll~~~~-~~~~~~~i~~~l~gnlCRCtgy~~i~~a~~~~~~~~~~----~~~~~~~~ 192 (1172)
+|+++|++|||||||||||++++||++++ .| +++||+++|+|||||||||++|++|+++++.+.+. .|. +
T Consensus 81 a~~~~~~~QCG~CtpG~vm~~~~ll~~~~~~~-~~~~i~~~l~gnlCRCtgy~~i~~a~~~~~~~~~~~~~~~~~---~- 155 (1319)
T PLN02906 81 ALASMHGSQCGFCTPGFIMSMYALLRSSKTPP-TEEQIEECLAGNLCRCTGYRPILDAFRVFAKTDDALYTGVSS---L- 155 (1319)
T ss_pred HHHHcCCCcCCCCchHHHHHHHHHHHhCCCCC-CHHHHHHHhcCCcccCCCCHHHHHHHHHHHhcccccCCcccc---h-
Confidence 99999999999999999999999999984 67 99999999999999999999999999999976321 011 0
Q ss_pred cccCCccccCCCCCCCCCCCCCCCCCcccccccccCCcccccccc----ccCCCCCCCC-CcCCChhhhccCCCCccccC
Q 001052 193 SLKEGEFVCPSTGKPCSCGMKNVSNADTCEKSVACGKTYEPVSYS----EIDGSTYTEK-ELIFPPELLLRKSNPLNLSG 267 (1172)
Q Consensus 193 ~~~~~~~~c~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-e~~~p~~l~~~~~~~~~~~~ 267 (1172)
+++++.+||..++..+.|....++... ....+ +|+ .++|.+|+++ |++||++|+.....++.+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~--~~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~ 225 (1319)
T PLN02906 156 SLQDGEPICPSTGKPCSCGSKTTSAAG--------TCKSD--RFQPISYSEIDGSWYTEKELIFPPELLLRKLTPLKLLG 225 (1319)
T ss_pred hhhhccccccccCcccccccccccccc--------ccccc--ccccccccccccccCccccccCCHHHhhCCCcceeecC
Confidence 122222455332211111100000000 00001 222 2678999999 99999999755455566643
Q ss_pred CCCceEEecCCHHHHHHHHhhCCCcEEEeccCcceeeeeeccccCceEEecCCcccccceeecCCcEEEcccccHHHHHH
Q 001052 268 FGGLKWYRPLKLQHLLELKSKYPDSKLLVGNTEVGIEMRLKRMQYQVLISVTHVPELNVLNVKDDGLEIGAAVRLTELLK 347 (1172)
Q Consensus 268 ~~~~~~~~P~sl~eal~ll~~~~~a~lvaGgTdl~v~~k~~~~~~~~lIdl~~v~EL~~I~~~~~~l~IGA~vTl~~l~~ 347 (1172)
.++++||+|+||+||+++|+++|++++|||||||+++++++...++++|||++|+||++|+.++++|+|||+|||++|++
T Consensus 226 ~~~~~~~~P~tl~ea~~ll~~~~~a~ivAGGTdl~~~~~~~~~~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~el~~ 305 (1319)
T PLN02906 226 NGGLTWYRPTSLQHLLELKAEYPDAKLVVGNTEVGIEMRFKNAQYPVLISPTHVPELNAIKVKDDGLEIGAAVRLSELQN 305 (1319)
T ss_pred CCCceEECcCCHHHHHHHHHhCCCCEEEEcCchhHHHhhhccCCCCeEEECCCChhhhcEEecCCEEEEecCCcHHHHHH
Confidence 24789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCccchHHHHHHHHHHhccccccccccccccccccCCCCChhHHHHhcCCEEEEEeCCCCeEEEehHhhh
Q 001052 348 MFRKVVTERPAHETSSCKAFIEQIKWFAGTQIKNVASVGGNICTASPISDLNPLWMASGAKFHIVDCKGNIRTTMAEEFF 427 (1172)
Q Consensus 348 ~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp~sD~~~~Llal~A~v~l~s~~g~~R~vpl~dF~ 427 (1172)
+|.+.+.+.++...+.++.|++++++|||+||||+||||||||+++|+||++|+|+||||+|+|.+.+|++|+||++|||
T Consensus 306 ~l~~~i~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~asP~sD~~p~LlAl~A~v~l~s~~g~~R~vpl~dFf 385 (1319)
T PLN02906 306 LFRKVVKERPAHETSACKAFIEQLKWFAGTQIRNVASIGGNICTASPISDLNPLWMAAGATFVIISCDGDIRSVPASDFF 385 (1319)
T ss_pred HHHHHhhhcchhhhHHHHHHHHHHHHhCCHhhcCceechhhhccCCCchhHHHHHHHcCcEEEEEcCCCCeEEEEHHHhc
Confidence 98888876666666789999999999999999999999999999999999999999999999999998658999999999
Q ss_pred cccccccCCCCeEEEEEEccCCCCccceeeeeecccCccccceeeeEEEEEEecCCcceEEEEEEEEEccCCCccccHHH
Q 001052 428 LGYRKVDLTSGEILLSIFLPWTRPFEFVKEFKQAHRRDDDIALVNAGMRVYLEEKDEEWVVSDALLVYGGVAPLSLSAKK 507 (1172)
Q Consensus 428 ~g~~~t~L~~~Eil~~I~iP~~~~~~~~~~~K~~~R~~~dia~v~~A~~~~~~~~~~~~~i~~~ria~Ggv~~~p~ra~~ 507 (1172)
.||++|.|+++|||++|+||.+.+..++.+||+++|+++|||+||+|+.++++++++.++|+++||+||||+++|+|+.+
T Consensus 386 ~g~~kt~L~~~Eil~~I~iP~~~~~~~~~~~K~~~R~~~dia~V~~A~~v~l~~~~~~~~i~~aria~Ggva~~p~ra~~ 465 (1319)
T PLN02906 386 LGYRKVDLKPDEILLSVFLPWTRPFEYVKEFKQAHRRDDDIAIVNAGMRVKLEEKDGEWIVSDASIAYGGVAPLSVSARK 465 (1319)
T ss_pred CccccccCCCCceEEEEEccCCCCCccEEEEEEcCccccchhheeeEEEEEEecCCCCceEeEEEEEEeccCCceecHHH
Confidence 99999999999999999999876678889999999999999999999999997411113799999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHhhccccccCCCCCCCChhHHHHHHHHHHHHHHHHHhhhccCCCCcccCCCcccccccccc
Q 001052 508 TKTFIVGKSWSQELLQNALKILQTDIILKEDAPGGMVDFRKSLTLSFFFKFFLWVSHQMEGKNSIKESVPSTHLSAMQSF 587 (1172)
Q Consensus 508 ~E~~L~Gk~l~~~~l~~a~~~l~~e~~~~~~~~~~saeYR~~la~~L~~r~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 587 (1172)
+|++|.|+.|+++++++|++.+.+++.|.++.+++|++||++|+.+||+|||+++..++....+..+.+++.+.|+.+.+
T Consensus 466 ~E~~L~G~~~~~~~i~~A~~~l~~~~~p~~d~~~~sa~YR~~la~~ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (1319)
T PLN02906 466 TEEFLIGKPWNKETLQDALKVLQKDILIKEDAPGGMVEFRKSLALSFFFKFFLWVSHQLEADGSTIETFPESHLSAAQPF 545 (1319)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHhccCCCcCCCCCCHHHHHHHHHHHHHHHHHHHhhhccccccccccCChhhccccccc
Confidence 99999999999999999999999999988887789999999999999999999999887421112235788899999999
Q ss_pred cCCCccccccccccCCCCccCCcccccCccccccceeeccccCCCCCCcEEEEEEecCCCCeEeeccChhhhccCCCEEE
Q 001052 588 HRPSIIGNQDYEITKHGTSVGSPEVHLSSRLQVTGEAEYTDDTPMPPNCLHAALVLSRRPHARILSIDDSGARSSPGFVG 667 (1172)
Q Consensus 588 ~r~~~~~~q~~~~~~~~~~vG~~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~sID~s~A~~~pGVv~ 667 (1172)
+||+|+|.|.|+.++++++|||+++|+|+..|+||+++|++|++++|||||+++||||++||+|++||+|+|++||||++
T Consensus 546 ~~~~~~~~q~~~~~~~~~~vGk~~~r~d~~~kvtG~a~Y~~Di~~~~g~L~a~~vrSp~aharI~sID~s~A~~~pGV~~ 625 (1319)
T PLN02906 546 PRPSSVGMQDYETVKQGTAVGQPEVHLSAELQVTGEAEYADDIPMPPNTLHAALVLSTKPHARILSIDDSEAKSSPGFAG 625 (1319)
T ss_pred cCCCCccceecccccccccCCCCccCcchhhhcceeEEeccCCcCCCCCEEEEEEecCcCceEEeecchHHHhCCCCeEE
Confidence 99999999999977889999999999999999999999999999767999999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCCCCCCccccccCeEEecCCeEEEEEECCHHHHHHhcccCeeEEecCCccCCHHHHhhcCCCCCCCc
Q 001052 668 IFFAEDVQGDNRIGPVVADEELFASEVVTCVGQVIGVVVAETHEEAKLASRKVQVEYEELPAILSIQEAIDAKSFHPNTE 747 (1172)
Q Consensus 668 Vvt~~Dipg~n~~~~~~~d~~~la~~~V~y~GqpVa~VvAet~~~A~~Aa~~V~V~ye~lp~v~~~~~A~~~~a~~~~~~ 747 (1172)
|+|++|+|+.|.+|....|+|+|++++|+|+|||||+|||+|+++|++|+++|+|+||+||+++|+++|++++++|+...
T Consensus 626 v~t~~Dip~~~~~g~~~~~~~~la~~~V~y~GqpVa~VvA~t~~~A~~Aa~~V~Veye~lp~v~~~~~Al~~~a~~~~~~ 705 (1319)
T PLN02906 626 IFLAKDVPGDNMIGPVVHDEELFATDVVTCVGQVIGVVVADTQENAKAAARKVKVEYEELPAILSIEEAIEAGSFHPNTE 705 (1319)
T ss_pred EEchhhCCCCCCCCCCCCCeeEecCcEEEEcCCeEEEEEECCHHHHHHHhCCCEEEEecCCccCCHHHHhcCCCcccCCC
Confidence 99999999877778777899999999999999999999999999999999999999999999999999999888774233
Q ss_pred cccccCCcccccccCC--CcEEEEEEEEECcccccCCCCCeEEEEEecCC-CeEEEEeCCCChHHHHHHHHHHhCCCCcc
Q 001052 748 RCFRKGDVDICFQSGQ--CDKIIEGEVRVGGQEHFYLEPHSSVVWTMDHG-NEVHMISSTQAPQKHQKYVSHVLGLPMSK 824 (1172)
Q Consensus 748 ~~~~~Gd~e~af~~~~--a~~vve~~y~~~~~~H~~mEp~~a~A~~~~~~-g~l~V~~stQ~p~~~r~~vA~~Lglp~~k 824 (1172)
..+.+||++++| ++ |+++||++|++++|+|+||||++|+|+|+ ++ |+|+||+|||+|+.+|..||++||||++|
T Consensus 706 ~~~~~Gdv~~af--~~a~a~~vve~~~~~~~~~H~~mEp~~~~A~~~-~~~g~l~v~~sTQ~p~~~r~~vA~~Lgip~~k 782 (1319)
T PLN02906 706 RRLEKGDVELCF--ASGQCDRIIEGEVQMGGQEHFYLEPNSSLVWTS-DSGNEVHMISSTQAPQKHQKYVAHVLGLPMSK 782 (1319)
T ss_pred ceeecCCHHHHh--hccCCceEEEEEEEECCccccccCCCeEEEEEe-CCCCEEEEEECCcCHHHHHHHHHHHhCCChHH
Confidence 456899999999 87 79999999999999999999999999998 45 68999999999999999999999999999
Q ss_pred EEEEeCccCCCCCCCCCcchHHHHHHHHHHHhCCCCEEEEeChhhhhhhcCCCCceEEEEEEeeCCCCcEEEEEEeEEec
Q 001052 825 VVCKTKRIGGGFGGKETRSAFIAAAAAVPSFLLNRPVNLTLDRDIDMMISGQRHSFLGKYKVGFTNEGKVLALDLEIYNN 904 (1172)
Q Consensus 825 V~V~~~~vGGgFG~K~~~~~~~~~~aAlaA~k~gRPVkl~~tR~E~~~~~~~R~~~~~~~k~g~d~dG~i~a~~~~~~~d 904 (1172)
|||+++++|||||+|.+....++++||++|+++||||||+|+|+|+|+.+++||++.++||+|+|+||+|+|++++++.|
T Consensus 783 VrV~~~~vGGgFGgK~~~~~~~~~~aAlaA~~~gRPVkl~~sReE~~~~~~~R~~~~~~~k~g~~~dG~I~a~~~~~~~d 862 (1319)
T PLN02906 783 VVCKTKRIGGGFGGKETRSAFIAAAAAVPAYLLNRPVKLTLDRDVDMMITGQRHAFLGKYKVGFTNEGKILALDLEIYNN 862 (1319)
T ss_pred eEEEeCCcccCccccccccchHHHHHHHHHHHhCCCEEEEecHHHHhhhcCCccceEEEEEEEECCCCCEEEEEEEEEec
Confidence 99999999999999998655567889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHhhccCCCCCCCeEEEEEEEEecCCCCCCccCCCChhhhHHHHHHHHHHHHHHcCCCHHHHHHHhc
Q 001052 905 AGNSLDLSLAVLERAMFHSDNVYEIPNVRIMGNVCFTNFPSNTAFRGFGGPQGMLITENWIQRVAVEVRKSPEEIREINF 984 (1172)
Q Consensus 905 ~Ga~~~~s~~v~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~RG~G~~q~~fa~Es~mDelA~~lg~DP~e~R~~Nl 984 (1172)
+|+|.+.+..++.+++.++.++|+|||++++++.|+||++|+|||||||.||++|++|++||++|++|||||+|||++|+
T Consensus 863 ~Ga~~~~~~~v~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~RG~G~pq~~fa~E~~mD~lA~~lG~DP~e~R~~Nl 942 (1319)
T PLN02906 863 GGNSLDLSGAVLERAMFHSDNVYEIPNVRIVGNVCFTNFPSNTAFRGFGGPQGMLITENWIQRIAVELNKSPEEIREMNF 942 (1319)
T ss_pred CcccCCcchHHHHHHHHhcCCCccCcceEEEEEEEECCCCCCCcccCCCHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhC
Confidence 99999888888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccccCCCHHHHHHHHHhhcChHhhHHHHhhcccCCCcceeeeEEeeeecccccccccccccceEEEEeeC
Q 001052 985 QGEGSILHYGQQLQHCTLFPLWNELKLSCDFLNARKEVDNFNLNNRWKKRGIAMVPTKFGISFTLKLMNQAGALVHVYTD 1064 (1172)
Q Consensus 985 ~~~g~~~~~g~~~~~~~l~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~grGia~~~~~~g~~~~~~~~~~~~a~V~v~~D 1064 (1172)
+++|+.+++|+.++++.+++||+++++.++|++|++++++||+.++|+|||+++++..||.++...+.+++.+.|+|++|
T Consensus 943 ~~~g~~~~~g~~~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~krGiG~a~~~~g~~~~~~~~~~~~a~V~i~~D 1022 (1319)
T PLN02906 943 QGEGSVTHYGQVLQHCTLPQLWDELKVSCDFLKRREEVDEFNAKNRWKKRGVAMVPTKFGISFTTKFMNQAGALVHVYTD 1022 (1319)
T ss_pred CCCCCCCcCCccccCCCHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCceEEEEEEecccccccccccCCccceEEEEcCC
Confidence 99999999999999999999999999999999998888889988999999999999999887754445678899999999
Q ss_pred CeEEEEeCCccCCCChHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCCccCcccchhHHhHHHHHHHHHHHHHHHHHHHH
Q 001052 1065 GTVLVTHGGVEMGQGLHTKVAQVAASAFNIPLSSVFVSETSTDKVPNASPTAASASSDIYGAAVLDACEQIKARMEPIAS 1144 (1172)
Q Consensus 1065 GsV~V~~g~~e~GQG~~T~~~QIaAe~Lgip~e~V~v~~~dT~~~p~~~~t~~Sr~t~~~g~Av~~A~~~Lr~rL~~~aa 1144 (1172)
|+|+|.+|++|||||++|+++||||++||||+|+|+|..+||+.+|++++|+|||+|++.|.||++||++||+||+++++
T Consensus 1023 GsV~V~~G~~e~GQG~~T~~aQiaAe~LGip~d~V~v~~~DT~~~p~~~gT~aSr~t~~~G~Av~~Aa~~l~~rl~~~a~ 1102 (1319)
T PLN02906 1023 GTVLVTHGGVEMGQGLHTKVAQVAASAFNIPLSSVFISETSTDKVPNASPTAASASSDMYGAAVLDACEQIKARMEPVAS 1102 (1319)
T ss_pred ceEEEEECCccCCCChHHHHHHHHHHHHCCCHHHEEEEccCCCCCCCCCCCccchhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHhc-cccceeEEee
Q 001052 1145 KHNFNSFAEKIIMFCN-ILSSQVHVMF 1170 (1172)
Q Consensus 1145 ~~~~~~w~~~i~~~~~-~~~~~~~~~~ 1170 (1172)
++++.+|.+++..++. ..++..++.|
T Consensus 1103 ~~~~~~~~~l~~~~~~~~~~l~a~~~~ 1129 (1319)
T PLN02906 1103 KLNFSSFAELVTACYFQRIDLSAHGFY 1129 (1319)
T ss_pred HcCCCCHHHHHHHhhccCCCeEEEEEe
Confidence 9889999999998863 3455665554
No 3
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=100.00 E-value=7.5e-230 Score=2040.96 Aligned_cols=1074 Identities=55% Similarity=0.893 Sum_probs=994.1
Q ss_pred eEEEEEECCEEEEecCCCCCCcHHHHHhhC-CCCCcccCccCCCCCceEEEEeccccCCCcccceeecccccchhccCCc
Q 001052 19 KEAILYVNGLRKVLPDGLAHLTLLEYLRDI-GLTGTKLGCGEGGCGACTVMVSRYDKKSKKCVHCAVNACLAPLYSLEGM 97 (1172)
Q Consensus 19 ~~i~~~~Ng~~~~~~~~~p~~~L~~~LR~~-~l~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~ 97 (1172)
|.+.|+|||++++++++||++||++|||+. +|||||+||+||+||||||+|++||+.. ++++.+|||||+|+++++|+
T Consensus 1 ~~l~F~VNG~~~~~~~vdP~~TL~~fLR~k~~ltgtKlgC~EGGCGaCtv~ls~~dp~~-~~~~~avNsCLt~l~s~~g~ 79 (1257)
T KOG0430|consen 1 MELVFAINGKRVEVELLPPDLTLNTFLREKLGLTGTKLGCGEGGCGACTVVLSKYDPEL-KVRHWAVNSCLTLLNSVHGL 79 (1257)
T ss_pred CceEEEECCEEeeEecCCcchhHHHHHHHhcCCcceeeccCCCCccceEEEEeccCCCc-eeEEeehhhhhhhcccccce
Confidence 468999999999999999999999999996 9999999999999999999999999999 99999999999999999999
Q ss_pred eEEEeecccCCCCCcCHHHHHHHHhCCCCCCCCchHHHHHHHHHHHhCC-CCCCHHHHHHHhhcCccccCCChhHHHHHH
Q 001052 98 HVITVEGVGNRKHGLHPIQESLVRSHGSQCGFCTPGFIMSMYSLLRSSQ-TPPTEEQIEESLAGNLCRCTGYRPIVDAFR 176 (1172)
Q Consensus 98 ~i~T~Egl~~~~~~~~~iq~a~~~~~~~qCG~CtpG~vm~~~~ll~~~~-~~~~~~~i~~~l~gnlCRCtgy~~i~~a~~ 176 (1172)
+|||+||||++..++||||++|++.||+|||||||||||+||+||++.+ .| |.+||+++|+||||||||||||+||++
T Consensus 80 ~VtT~EGlGn~~~g~HPiq~RlA~~hgsQCGFCtPG~vmsmYalL~n~~~~~-T~~eie~a~~GNLCRCTGYRPIldA~k 158 (1257)
T KOG0430|consen 80 EVTTSEGLGNRRDGYHPIQERLAKMHGSQCGFCTPGFVMSMYALLRNSKNSP-TMEEIENAFGGNLCRCTGYRPILDAMK 158 (1257)
T ss_pred EEEeeecccccccCcCcHHHHHhhccCCcccCCCccHHHHHHHHHHhCCCCC-CHHHHHHhhccceeeecCCchHHHHHh
Confidence 9999999998889999999999999999999999999999999999998 66 999999999999999999999999999
Q ss_pred HHHhccccccccCCcccccCCccccCCCCCCCCCCCCCCCCCcccccccccCCccccccccccCCCCCCCC-CcCCChhh
Q 001052 177 VFAKTNDALYTNMSSMSLKEGEFVCPSTGKPCSCGMKNVSNADTCEKSVACGKTYEPVSYSEIDGSTYTEK-ELIFPPEL 255 (1172)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~~p~~l 255 (1172)
+||.+.+ ||... .+..|.+ + ++ .++..+ +||||+ |++|||+|
T Consensus 159 SFa~d~~----------------~~~~g-~~~~~~~-----~------------~~--~~~~~~-~~~dp~~~~i~~pe~ 201 (1257)
T KOG0430|consen 159 SFAVDSD----------------ICGPG-CDGFSIA-----E------------EK--DIEDLS-PPYDPKKELIFPPEL 201 (1257)
T ss_pred hhccCCC----------------ccccC-ccccccc-----c------------cc--cccccc-CCCCCccCcccChHH
Confidence 9996542 44321 1112210 0 11 445566 899999 99999999
Q ss_pred hccCCCCccccCCCCceEEecCCHHHHHHHHhhCCCcEEEeccCcceeeeeeccccCceEEecCCcccccceeecCCcEE
Q 001052 256 LLRKSNPLNLSGFGGLKWYRPLKLQHLLELKSKYPDSKLLVGNTEVGIEMRLKRMQYQVLISVTHVPELNVLNVKDDGLE 335 (1172)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~P~sl~eal~ll~~~~~a~lvaGgTdl~v~~k~~~~~~~~lIdl~~v~EL~~I~~~~~~l~ 335 (1172)
+..... ..+++ ++.+|+.|.||+|++++++++|++++|+|||..+++++.+. ++++||+++||||+.+..++++|+
T Consensus 202 ~~~~~~-~~~~~-~~~~W~~P~sl~eL~~~~~~~~~~~Lv~GNT~~gv~~r~~~--~~~~Id~~~v~el~~~~~~~~gi~ 277 (1257)
T KOG0430|consen 202 LKRKKT-TLLGN-DGIRWYWPVSLEELFELKANKPDAKLVAGNTAHGVYRRSPD--YQKFIDVSGVPELKALNVDDNGLE 277 (1257)
T ss_pred hccccc-cccCC-CCcEEeCcccHHHHHHHHhcCcceEEEeccccceEEeccCC--CcceechhcCchhhhcccCCCceE
Confidence 977333 55555 78999999999999999999999999999999999999888 899999999999998888999999
Q ss_pred EcccccHHHHHHHHHHhhhcCCCCccchHHHHHHHHHHhccccccccccccccccccCC----CCChhHHHHhcCCEEEE
Q 001052 336 IGAAVRLTELLKMFRKVVTERPAHETSSCKAFIEQIKWFAGTQIKNVASVGGNICTASP----ISDLNPLWMASGAKFHI 411 (1172)
Q Consensus 336 IGA~vTl~~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp----~sD~~~~Llal~A~v~l 411 (1172)
|||++||+++++.+++... .+. .++|+.+.+|+.+||++||||.|||||||+.++| .||++++|+|+||+|.+
T Consensus 278 lGa~~sls~~~~~l~~~~~-~~~--~~~~~~~~~hl~~~A~~~IRN~atigGnI~~~~~~~~f~SDl~~~l~a~~a~v~~ 354 (1257)
T KOG0430|consen 278 LGAALSLSETMELLRKLVK-RPG--FEYFKALWEHLKWFANVQIRNVGTIGGNICTKAQSPEFPSDLFILLEALDAKVTI 354 (1257)
T ss_pred EcccccHHHHHHHHHHHHh-CcH--HHHHHHHHHHHHHhcccceeccccccceeEeccCCCCCchhHHHHHHhhccEEEE
Confidence 9999999999999988776 442 2799999999999999999999999999999998 89999999999999999
Q ss_pred EeCCCCeEEEehHhhhcccccccCCCCeEEEEEEccCCCCccceeeeeecccCccccceeeeEEEEEEecCCcceEEEEE
Q 001052 412 VDCKGNIRTTMAEEFFLGYRKVDLTSGEILLSIFLPWTRPFEFVKEFKQAHRRDDDIALVNAGMRVYLEEKDEEWVVSDA 491 (1172)
Q Consensus 412 ~s~~g~~R~vpl~dF~~g~~~t~L~~~Eil~~I~iP~~~~~~~~~~~K~~~R~~~dia~v~~A~~~~~~~~~~~~~i~~~ 491 (1172)
.+..++..++ ||.+|+++.|.+.|||.+|+||...+ +|.+||++.|+++|||+||++|+..+. +|+++
T Consensus 355 ~~~~~~~~~~----~l~~y~~~~l~~~~illsv~ip~~~~--~f~~~k~a~R~e~a~a~vNa~fl~e~~------~V~~~ 422 (1257)
T KOG0430|consen 355 LNNSGDLEKV----FLEEYLGSSLGAKEILLSVVLPASRK--YFESYKQAPRRENAIAYVNAAFLAEVG------KVSSA 422 (1257)
T ss_pred eecCCcccee----eHhhhhccccCcceEEEEEEccCcHH--HHHHHHhcccccchhhhhhHHhhhccc------eeeee
Confidence 9988754444 55555678899999999999999976 899999999999999999998887664 79999
Q ss_pred EEEEccCCCccccHHHHHHHhcCCCCCHHHHHHHHHhhccccccCCCCCCCChhHHHHHHHHHHHHHHHHHhhhccCCCC
Q 001052 492 LLVYGGVAPLSLSAKKTKTFIVGKSWSQELLQNALKILQTDIILKEDAPGGMVDFRKSLTLSFFFKFFLWVSHQMEGKNS 571 (1172)
Q Consensus 492 ria~Ggv~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~e~~~~~~~~~~saeYR~~la~~L~~r~l~~~~~~~~~~~~ 571 (1172)
||+|||++|..+++.++|+.|.||.|+++.+++|+..|.+++.|+. |+++.+||+.||.+||||||+.+.+.++.
T Consensus 423 ~i~fGg~~p~~i~a~~~~~~~~gk~~~~~ll~~a~~lL~~~l~~~~--p~~~~~yR~~La~sfffKF~l~~~~~~~~--- 497 (1257)
T KOG0430|consen 423 RICFGGIAPDFIHAKKTEELLLGKPWEEELLEDAFGLLQSDLVPDE--PGGMPEYRKKLALGFFFKFLLKVAHKVKN--- 497 (1257)
T ss_pred eEeecCcCcchhhhhhHHHHhhcccccHHHHHHHHHhhhhhccCCC--CCCcHHHHHHHHHHHHHHHHHHHhhhccc---
Confidence 9999999999999999999999999999999999999999998776 78999999999999999999999998852
Q ss_pred cccCCCcccccccccccCCCccccccccccCCCCccCCcccccCccccccceeeccccCCCCCCcEEEEEEecCCCCeEe
Q 001052 572 IKESVPSTHLSAMQSFHRPSIIGNQDYEITKHGTSVGSPEVHLSSRLQVTGEAEYTDDTPMPPNCLHAALVLSRRPHARI 651 (1172)
Q Consensus 572 ~~~~~~~~~~s~~~~~~r~~~~~~q~~~~~~~~~~vG~~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I 651 (1172)
.....++.....+|++++.|.|.+..+.++||+|++++.+..|+||||.|+||++.+++.||++||.|+++||+|
T Consensus 498 -----~~~~~~g~~~~~~~~ls~~Q~~~~~q~~~pVG~pi~~~~a~~qaSGEAvY~dDip~~~n~lh~aFV~St~p~A~I 572 (1257)
T KOG0430|consen 498 -----GNKFITGGSLLARPLLSGGQQFETTQEHYPVGRPVEKLEALIQASGEATYVDDIPTPPNTLHAAFVLSTKPHAKI 572 (1257)
T ss_pred -----cCCccCCCccccccccccceeecCCCCCCcCcchhhhhhhhhhcccceEEecCCCCCCCeeEEEEEEcccCCcEE
Confidence 123344455667899988888887777999999999999999999999999999999999999999999999999
Q ss_pred eccChhhhccCCCEEEEEecCCCCCCCC--CCC--CCCCccccccCeEEecCCeEEEEEECCHHHHHHhcccCeeEEecC
Q 001052 652 LSIDDSGARSSPGFVGIFFAEDVQGDNR--IGP--VVADEELFASEVVTCVGQVIGVVVAETHEEAKLASRKVQVEYEEL 727 (1172)
Q Consensus 652 ~sID~s~A~~~pGVv~Vvt~~Dipg~n~--~~~--~~~d~~~la~~~V~y~GqpVa~VvAet~~~A~~Aa~~V~V~ye~l 727 (1172)
++||+|+|+++|||+++++++|+|+.|. ++. ...|+++||+++|+|+|||||+|||+|.++|++||++|+|+|+++
T Consensus 573 ~sID~seAl~~~GVv~~~~akDiPg~n~~~i~~~~~~~de~lFA~~~v~~~GQ~ig~ivAdt~~~A~rAA~lVkv~Y~~l 652 (1257)
T KOG0430|consen 573 LSIDASEALKLPGVVAFFSAKDIPGNNMKNIGNMFFPEDEELFATDVVTCVGQPIGVIVADTHELAKRAAKLVKVEYEEL 652 (1257)
T ss_pred eeecchhhcCCCceEEEEecccCCCCCccccccccCCCccceeecceeEEcCcEEEEEEeCCHHHHHHhhhceEEEeccC
Confidence 9999999999999999999999999883 332 367999999999999999999999999999999999999999999
Q ss_pred -CccCCHHHHhhcCCCCCCCccccccCCcccccccCCCcEEEEEEEEECcccccCCCCCeEEEEEecCCCeEEEEeCCCC
Q 001052 728 -PAILSIQEAIDAKSFHPNTERCFRKGDVDICFQSGQCDKIIEGEVRVGGQEHFYLEPHSSVVWTMDHGNEVHMISSTQA 806 (1172)
Q Consensus 728 -p~v~~~~~A~~~~a~~~~~~~~~~~Gd~e~af~~~~a~~vve~~y~~~~~~H~~mEp~~a~A~~~~~~g~l~V~~stQ~ 806 (1172)
|+++++++|++..++++ .+..++.+++.+.|+..+++.++|++++++.|+|||||||+++|+|+ || .|+||+||||
T Consensus 653 ~p~I~t~e~Ai~~~s~~~-~~~~~~~~~~~~~~~~~~~d~i~~Ge~~mG~QeHFYmEtQttl~vP~-e~-el~v~~STQ~ 729 (1257)
T KOG0430|consen 653 PPPILPSEDAVKDKSLSE-TEPRLRKGDVGKSFQLEECDKILEGELDMGGQEHFYMEPQTTLVVPF-EG-ELQVYSSTQW 729 (1257)
T ss_pred CCceecHHHHHhhhcccC-CCccccccCccccccccccceeEEEEEEecceeEEEeccceeEEeec-CC-eEEEEEcCcC
Confidence 67999999999988765 56667788877666435679999999999999999999999999998 34 8999999999
Q ss_pred hHHHHHHHHHHhCCCCccEEEEeCccCCCCCCCCCcchHHHHHHHHHHHhCCCCEEEEeChhhhhhhcCCCCceEEEEEE
Q 001052 807 PQKHQKYVSHVLGLPMSKVVCKTKRIGGGFGGKETRSAFIAAAAAVPSFLLNRPVNLTLDRDIDMMISGQRHSFLGKYKV 886 (1172)
Q Consensus 807 p~~~r~~vA~~Lglp~~kV~V~~~~vGGgFG~K~~~~~~~~~~aAlaA~k~gRPVkl~~tR~E~~~~~~~R~~~~~~~k~ 886 (1172)
|..+|..||++||||+|||+|+++|+|||||||.++..+++++|||+|+|+|||||++++|++||.++|+|||+..+|++
T Consensus 730 ~~~tQ~~VA~~Lgipa~~V~v~trRvGGGFGGK~trs~~VA~a~ALaA~Kl~RPvr~~l~r~~dM~itG~Rhp~~~~Ykv 809 (1257)
T KOG0430|consen 730 PDFTQSVVAHVLGLPANKVQVKTRRLGGGFGGKETRSNPVAAAAALAAYKLNRPVRFVLSRESDMIITGKRHPFHGKYKV 809 (1257)
T ss_pred cHHHHHHHHHHhCCCccceEEEEEeeccccccccccccHHHHHHHHHHHHhCCCEEEEecchhhhhhcCCccceEEeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCcEEEEEEeEEecCCCCCCchHHHHHHHhhccCCCCCCCeEEEEEEEEecCCCCCCccCCCChhhhHHHHHHHHH
Q 001052 887 GFTNEGKVLALDLEIYNNAGNSLDLSLAVLERAMFHSDNVYEIPNVRIMGNVCFTNFPSNTAFRGFGGPQGMLITENWIQ 966 (1172)
Q Consensus 887 g~d~dG~i~a~~~~~~~d~Ga~~~~s~~v~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~RG~G~~q~~fa~Es~mD 966 (1172)
|+++||||+|+++++|.|+|++.|.|+.++ +++.+++++|++||+|+++++|+||.|+++||||||.||++++.|++|.
T Consensus 810 gf~~~GkI~aL~~~~~~naG~s~d~S~~~~-~~~~~~~n~Y~~~~~r~~G~~ckTN~pSnTa~Rg~G~pQG~~i~E~iie 888 (1257)
T KOG0430|consen 810 GFKSDGKILALDLEFYENAGWSKDESPSVL-RAMFHSDNVYEIGDVRFDGYVCKTNLPSNTAFRGPGSPQGILITENIIE 888 (1257)
T ss_pred EEccCCeEEEEehhhhhccCCCcCcchHHH-hhhhhhhheecccceeeeeeEEecCCCCcchhcCCCChhhHHHHHHHHH
Confidence 999999999999999999999999999888 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHhcCCCCCcccccccccCCCHHHHHHHHHhhcChHhhHHHHhhcccCCCcceeeeEEeeeecccc
Q 001052 967 RVAVEVRKSPEEIREINFQGEGSILHYGQQLQHCTLFPLWNELKLSCDFLNARKEVDNFNLNNRWKKRGIAMVPTKFGIS 1046 (1172)
Q Consensus 967 elA~~lg~DP~e~R~~Nl~~~g~~~~~g~~~~~~~l~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~grGia~~~~~~g~~ 1046 (1172)
++|.++|+||.|+|++|+++.|+.+++++.++.+.+++||+++.+.++|++|+.++++||+.|+||||||++.|++||++
T Consensus 889 ~VA~~~g~d~eeVR~~N~y~eg~~~~~~~~~~~~~l~~~w~~~~~sS~y~~Rk~ev~~FN~~N~WrKRGi~~vp~~f~i~ 968 (1257)
T KOG0430|consen 889 RIAFELGKDPEEVRKINFYVEGSLTYYHGELQHCTLPQLWPECLVSSKFEKRKSEIEEFNKENRWKKRGLAMVPMKFGIS 968 (1257)
T ss_pred HHHHHhCCCHHHHhhhhhhhcccccccCCCcccCcHHHHHHHHHHhchHHHHHHHHHHhhhcChhhhcCceEeeeeccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccccccceEEEEeeCCeEEEEeCCccCCCChHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCCccCcccchhHHhHH
Q 001052 1047 FTLKLMNQAGALVHVYTDGTVLVTHGGVEMGQGLHTKVAQVAASAFNIPLSSVFVSETSTDKVPNASPTAASASSDIYGA 1126 (1172)
Q Consensus 1047 ~~~~~~~~~~a~V~v~~DGsV~V~~g~~e~GQG~~T~~~QIaAe~Lgip~e~V~v~~~dT~~~p~~~~t~~Sr~t~~~g~ 1126 (1172)
+.. ++.|.|+|+.||||.|.||++|||||++|+++|++|+.||||.+.|++.++||+.+||+++|+||.++++.|.
T Consensus 969 ~~~----~~~a~V~Iy~DGSV~v~hgGiEmGQGL~TK~~Qvaa~~l~ip~~~v~v~~tsT~~v~na~~Ta~S~~Sd~~g~ 1044 (1257)
T KOG0430|consen 969 FTG----QAPALVHIYTDGTVVVTHGGIEMGQGLNTKVAQVAAYALGIPLSSVFVSETSTDKVPNASPTAASVSSDMYGA 1044 (1257)
T ss_pred ccC----CCceEEEEEcCCeEEEEECcEEcccchhHHHHHHHHHHhCCcccceEEeecccccccCCCccccccccccccH
Confidence 854 3679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHh-ccccceeEE
Q 001052 1127 AVLDACEQIKARMEPIASKHNFNSFAEKIIMFC-NILSSQVHV 1168 (1172)
Q Consensus 1127 Av~~A~~~Lr~rL~~~aa~~~~~~w~~~i~~~~-~~~~~~~~~ 1168 (1172)
||+.||++|.+||.|+..+++..+|++||++|| .-++++.+-
T Consensus 1045 AV~~~C~~l~~RL~Pv~~k~~~~tw~~~i~~AY~q~V~LsAs~ 1087 (1257)
T KOG0430|consen 1045 AVLDACETINARLEPVKSKHNFNTWEELIQAAYGQSINLSASD 1087 (1257)
T ss_pred HHHHHHHHHHHhhhhhhhhcCCccHHHHHHHHhhCccceeeec
Confidence 999999999999999999999999999999997 556666553
No 4
>PLN00192 aldehyde oxidase
Probab=100.00 E-value=2.1e-224 Score=2164.63 Aligned_cols=1083 Identities=32% Similarity=0.526 Sum_probs=964.6
Q ss_pred ceEEEEEECCEEEEecCCCCCCcHHHHHhhC-CCCCcccCccCCCCCceEEEEeccccCCCcccceeecccccchhccCC
Q 001052 18 TKEAILYVNGLRKVLPDGLAHLTLLEYLRDI-GLTGTKLGCGEGGCGACTVMVSRYDKKSKKCVHCAVNACLAPLYSLEG 96 (1172)
Q Consensus 18 ~~~i~~~~Ng~~~~~~~~~p~~~L~~~LR~~-~l~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g 96 (1172)
++.|+|+|||+++++++++|++|||+|||+. ||||||.||++|+||||||+|+++|+.+|++.+++|||||+|+++++|
T Consensus 3 ~~~i~~~vNg~~~~~~~~~p~~~Ll~~LR~~~~ltgtK~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g 82 (1344)
T PLN00192 3 NMSLVFAVNGERFELSSVDPSTTLLEFLRTQTPFKSVKLGCGEGGCGACVVLLSKYDPVLDQVEDFTVSSCLTLLCSVNG 82 (1344)
T ss_pred cceEEEEECCEEEEeccCCCCCcHHHHHHHhhCCCCcCCCCCCCcCCCcEEEEeeccccccCcCCcEEehHHHHHHHhCC
Confidence 4579999999999997799999999999996 999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeecccCCCCCcCHHHHHHHHhCCCCCCCCchHHHHHHHHHHHhC-----CCC------CCHHHHHHHhhcCcccc
Q 001052 97 MHVITVEGVGNRKHGLHPIQESLVRSHGSQCGFCTPGFIMSMYSLLRSS-----QTP------PTEEQIEESLAGNLCRC 165 (1172)
Q Consensus 97 ~~i~T~Egl~~~~~~~~~iq~a~~~~~~~qCG~CtpG~vm~~~~ll~~~-----~~~------~~~~~i~~~l~gnlCRC 165 (1172)
++|+|||||++..+.|||||++|+++|++|||||||||||++|+||+++ |+| +|++||+++|+||||||
T Consensus 83 ~~i~TvEgl~~~~~~lhpvq~a~~~~~~~QCGfCtpG~vms~~~ll~~~~~~~~~~p~~~~~~~~~~~i~~~l~gnlCRC 162 (1344)
T PLN00192 83 CSITTSEGLGNSKDGFHPIHKRFAGFHASQCGFCTPGMCISLFSALVNADKTDRPEPPSGFSKLTVVEAEKAVSGNLCRC 162 (1344)
T ss_pred CEEEeecCcCCCCCCCCHHHHHHHHcCCCccCCCChHHHHHHHHHHHhcccccCCCcccccCCCCHHHHHHHhcCCceeC
Confidence 9999999998545789999999999999999999999999999999662 232 38999999999999999
Q ss_pred CCChhHHHHHHHHHhccccccccCCcccccCC-ccccCCCCCCCCCCCCCCCCCcccccccccCCccccccccccCCCCC
Q 001052 166 TGYRPIVDAFRVFAKTNDALYTNMSSMSLKEG-EFVCPSTGKPCSCGMKNVSNADTCEKSVACGKTYEPVSYSEIDGSTY 244 (1172)
Q Consensus 166 tgy~~i~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~c~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (1172)
|||+||++|+++++.+.+ ++++ .+||++++ .| + . ...++|++|
T Consensus 163 tgY~~i~~a~~~~~~~~~----------~~~~~~~~~~~~~---~~-------~-~---------------~~~~~~~~~ 206 (1344)
T PLN00192 163 TGYRPIVDACKSFAADVD----------IEDLGLNSFWKKG---ES-------E-E---------------AKLSKLPPY 206 (1344)
T ss_pred CCCHHHHHHHHHHHhhcc----------chhcccccccccC---Cc-------c-h---------------hhhhhcccC
Confidence 999999999999986531 1111 13565422 01 0 0 011468899
Q ss_pred CCC-Cc-CCChhhhcc--CCCCccccCCCCceEEecCCHHHHHHHHhhCC----CcEEEeccCcceeeeeeccccCceEE
Q 001052 245 TEK-EL-IFPPELLLR--KSNPLNLSGFGGLKWYRPLKLQHLLELKSKYP----DSKLLVGNTEVGIEMRLKRMQYQVLI 316 (1172)
Q Consensus 245 ~~~-e~-~~p~~l~~~--~~~~~~~~~~~~~~~~~P~sl~eal~ll~~~~----~a~lvaGgTdl~v~~k~~~~~~~~lI 316 (1172)
+++ ++ +| |+|+.. ....+.+. ++++||+|+||+||+++|+++| ++++||||||++++ +. ...++++|
T Consensus 207 ~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~P~sl~ea~~ll~~~~~~~~~a~lvAGgTdl~~~-k~-~~~p~~lI 281 (1344)
T PLN00192 207 NHSDHICTF-PEFLKKEIKSSLLLDS--SRYRWYTPVSVEELQSLLESNNFDGVSVKLVVGNTGTGYY-KD-EELYDKYI 281 (1344)
T ss_pred CCccccccC-hhhhhcccCccceecC--CCceEECcCCHHHHHHHHHhCCCCCCCeEEEEeCCcceee-ec-cCCCCeEE
Confidence 988 77 77 777743 22333443 5789999999999999999996 89999999999884 44 66789999
Q ss_pred ecCCcccccceeecCCcEEEcccccHHHHHHHHHHhhhcCCCCccchHHHHHHHHHHhccccccccccccccccccCC--
Q 001052 317 SVTHVPELNVLNVKDDGLEIGAAVRLTELLKMFRKVVTERPAHETSSCKAFIEQIKWFAGTQIKNVASVGGNICTASP-- 394 (1172)
Q Consensus 317 dl~~v~EL~~I~~~~~~l~IGA~vTl~~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp-- 394 (1172)
||++|+||+.|+.++++|+|||+|||++++++++.. ..+. ..|+.|++++++|||+||||+||||||||||+|
T Consensus 282 di~~I~EL~~I~~~~~~l~IGA~vTl~el~~~l~~~--~~~~---~~~p~L~~~~~~vAs~qIRN~aTlGGNI~~Asp~~ 356 (1344)
T PLN00192 282 DIRHIPELSMIRRDEKGIEIGAVVTISKAIEALREE--SKSE---YVFKKIADHMEKIASRFVRNTGSIGGNLVMAQRKQ 356 (1344)
T ss_pred EcCCChhhhcEEecCCEEEEeecCcHHHHHHHHHhh--cccc---chHHHHHHHHHHhcChhhccceechhhhcccCCCC
Confidence 999999999999999999999999999999886543 1111 168999999999999999999999999999974
Q ss_pred -CCChhHHHHhcCCEEEEEeCCCCeEEEehHhhhcccccccCCCCeEEEEEEccCCC------CccceeeeeecccC-cc
Q 001052 395 -ISDLNPLWMASGAKFHIVDCKGNIRTTMAEEFFLGYRKVDLTSGEILLSIFLPWTR------PFEFVKEFKQAHRR-DD 466 (1172)
Q Consensus 395 -~sD~~~~Llal~A~v~l~s~~g~~R~vpl~dF~~g~~~t~L~~~Eil~~I~iP~~~------~~~~~~~~K~~~R~-~~ 466 (1172)
+||++|+|+||||+|+|.+.+| +|+||++|||.+ +.|++||||++|+||.+. ...+|.+||+++|+ ++
T Consensus 357 p~sD~~p~LlAl~A~v~l~s~~g-~R~vpl~dFf~~---~~l~~~Eil~~I~iP~~~~~~~~~~~~~f~~yk~~~Rr~~~ 432 (1344)
T PLN00192 357 FPSDIATILLAAGSTVNIQNASK-REKLTLEEFLER---PPLDSKSLLLSVEIPSWTSSSGSDTKLLFETYRAAPRPLGN 432 (1344)
T ss_pred CchhHHHHHHHhCcEEEEEeCCc-eEEEeHHHHhcc---CccCCcceEEEEEccCCccccccCcccceeeeeeccccccc
Confidence 6999999999999999999999 999999999984 569999999999999653 34677889999997 88
Q ss_pred ccceeeeEEEEEEe-----cCCcceEEEEEEEEEccCCC-ccccHHHHHHHhcCCCCCHHHHHHHHHhhccccccCCCCC
Q 001052 467 DIALVNAGMRVYLE-----EKDEEWVVSDALLVYGGVAP-LSLSAKKTKTFIVGKSWSQELLQNALKILQTDIILKEDAP 540 (1172)
Q Consensus 467 dia~v~~A~~~~~~-----~~~~~~~i~~~ria~Ggv~~-~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~e~~~~~~~~ 540 (1172)
|||+||+||.++++ +++ +|+++||+||||++ +|+|+.++|++|.||.|+++++++|++.+.+++.|.++
T Consensus 433 diA~V~aA~~v~~~~~~~~~~~---~i~~aria~Ggvap~~P~ra~~~E~~L~Gk~~~~~~l~~A~~~l~~~~~p~~~-- 507 (1344)
T PLN00192 433 ALPYLNAAFLAEVSQDASSGGI---VVNDCRLAFGAYGTKHAIRARKVEEFLTGKVLSDSVLYEAVRLLKGIVVPEDG-- 507 (1344)
T ss_pred chhhheeeEEEEEEecccCCCC---eEeEEEEEEecCCCCceecHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCCCC--
Confidence 99999999999996 344 79999999999999 69999999999999999999999999999999987664
Q ss_pred CCChhHHHHHHHHHHHHHHHHHhhhccCCCCcccCCCcc-----------cccccccccCCCccccccccccCCCCccCC
Q 001052 541 GGMVDFRKSLTLSFFFKFFLWVSHQMEGKNSIKESVPST-----------HLSAMQSFHRPSIIGNQDYEITKHGTSVGS 609 (1172)
Q Consensus 541 ~~saeYR~~la~~L~~r~l~~~~~~~~~~~~~~~~~~~~-----------~~s~~~~~~r~~~~~~q~~~~~~~~~~vG~ 609 (1172)
++|++||++|+.+|++|||.++++.+.. .+++. ..|+...++||+++|.|.|++++++++|||
T Consensus 508 ~~s~eYRr~la~~l~~r~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~vG~ 581 (1344)
T PLN00192 508 TSHPEYRSSLAVGFLFDFLSPLIESNAK------SSNGWLDGGSNTKQNPDQHDDVKKPTLLLSSKQQVEENNEYHPVGE 581 (1344)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhccc------cccccccccccccccccccccccccCCCCCcceeeecccccCcCCC
Confidence 4799999999999999999999987621 12222 368888999999999999998899999999
Q ss_pred cccccCccccccceeeccccCCCCCCcEEEEEEecCCCCeEeeccChhhhccCCCEEEEEecCCCC-CCCCCCC--CCCC
Q 001052 610 PEVHLSSRLQVTGEAEYTDDTPMPPNCLHAALVLSRRPHARILSIDDSGARSSPGFVGIFFAEDVQ-GDNRIGP--VVAD 686 (1172)
Q Consensus 610 ~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~sID~s~A~~~pGVv~Vvt~~Dip-g~n~~~~--~~~d 686 (1172)
|++|+|+..|+||+++|++|++++|||||++|||||++||||++||+++|+++|||++|+|++|+| +.+.++. ...|
T Consensus 582 ~~~r~d~~~kvtG~a~Y~~Di~~~pgmL~a~~vrSp~ahArI~sID~s~A~~~pGV~aV~t~~Dip~~~~~~g~~~~~~~ 661 (1344)
T PLN00192 582 PIKKVGAALQASGEAVYVDDIPSPKNCLYGAFIYSTKPLARVKGIKFKSNLVPQGVLAVITFKDIPKGGQNIGSKTIFGP 661 (1344)
T ss_pred CCcChhhHhhcccceecccccCCCCCCEEEEEEecCCCceEEEEEEhHHhhcCCCcEEEEchHHcCcccccCCCCCCCCC
Confidence 999999999999999999999955799999999999999999999999999999999999999998 3333443 2458
Q ss_pred ccccccCeEEecCCeEEEEEECCHHHHHHhcccCeeEEec--C-CccCCHHHHhhcCCCCCC--CccccccCCccccccc
Q 001052 687 EELFASEVVTCVGQVIGVVVAETHEEAKLASRKVQVEYEE--L-PAILSIQEAIDAKSFHPN--TERCFRKGDVDICFQS 761 (1172)
Q Consensus 687 ~~~la~~~V~y~GqpVa~VvAet~~~A~~Aa~~V~V~ye~--l-p~v~~~~~A~~~~a~~~~--~~~~~~~Gd~e~af~~ 761 (1172)
+|+|++++|+|+|||||+|||+|+++|++|+++|+|+||+ + |+++|+++|+++++++.. .......||++++|
T Consensus 662 ~~~la~~~Vr~~Gq~Va~VvA~t~~~A~~Aa~~V~VeYe~~~l~p~v~~i~~Al~~~s~~~~~~~~~~~~~GD~~~af-- 739 (1344)
T PLN00192 662 EPLFADEVTRCAGQRIALVVADTQKHADMAANLAVVEYDTENLEPPILTVEDAVKRSSLFEVPPFLYPKPVGDISKGM-- 739 (1344)
T ss_pred ceeccCCEEEEcCCeEEEEEECCHHHHHHHhccCEEEEecCCCCCcccCHHHHhcCCCCcccChhhcccccCCHHHHh--
Confidence 9999999999999999999999999999999999999997 4 999999999998875421 12334679999999
Q ss_pred CCCcEEE-EEEEEECcccccCCCCCeEEEEEecCCCeEEEEeCCCChHHHHHHHHHHhCCCCccEEEEeCccCCCCCCCC
Q 001052 762 GQCDKII-EGEVRVGGQEHFYLEPHSSVVWTMDHGNEVHMISSTQAPQKHQKYVSHVLGLPMSKVVCKTKRIGGGFGGKE 840 (1172)
Q Consensus 762 ~~a~~vv-e~~y~~~~~~H~~mEp~~a~A~~~~~~g~l~V~~stQ~p~~~r~~vA~~Lglp~~kV~V~~~~vGGgFG~K~ 840 (1172)
++|+++| |++|++++|+|+||||++|+|+|+ ++|+|+||+|||+|+.+|..||++||||++||+|+++++|||||+|.
T Consensus 740 ~~a~~vv~e~~~~~~~q~H~~mEp~~~vA~~~-~dg~l~V~~sTQ~p~~~r~~vA~~Lgip~~~VrV~~~~vGGgFGgK~ 818 (1344)
T PLN00192 740 AEADHKILSAEIKLGSQYYFYMETQTALALPD-EDNCIVVYSSTQCPEYVHSVIARCLGIPEHNVRVITRRVGGGFGGKA 818 (1344)
T ss_pred ccCCeEEEEEEEEECCEeeeeccCceEEEEEc-CCCCEEEEECCCCHHHHHHHHHHHhCCChHHEEEEecccccCCCccc
Confidence 9999977 999999999999999999999998 57789999999999999999999999999999999999999999998
Q ss_pred CcchHHHHHHHHHHHhCCCCEEEEeChhhhhhhcCCCCceEEEEEEeeCCCCcEEEEEEeEEecCCCCCCchHHHHHHHh
Q 001052 841 TRSAFIAAAAAVPSFLLNRPVNLTLDRDIDMMISGQRHSFLGKYKVGFTNEGKVLALDLEIYNNAGNSLDLSLAVLERAM 920 (1172)
Q Consensus 841 ~~~~~~~~~aAlaA~k~gRPVkl~~tR~E~~~~~~~R~~~~~~~k~g~d~dG~i~a~~~~~~~d~Ga~~~~s~~v~~~~~ 920 (1172)
.....+++.||++|+++||||||+|+|+|+|+.+++|||+.++||+|+|+||+|+|++++++.|+|+|.+.+.. +...+
T Consensus 819 ~~~~~~~~~aAlaA~~~gRPVr~~~sR~Edm~~~~~R~~~~~~~k~g~~~dG~I~a~~~~~~~d~Ga~~~~~~~-~~~~~ 897 (1344)
T PLN00192 819 VKSMPVATACALAAFKLQRPVRMYLNRKTDMIMAGGRHPMKITYSVGFKSDGKITALHLDILINAGISPDISPI-MPRNI 897 (1344)
T ss_pred cccchHHHHHHHHHHHhCCCEEEEecHHHHhhhcCCcCceEEEEEEEECCCCCEEEEEEEEEEecccCCCcchH-HHHHH
Confidence 76677889999999999999999999999999999999999999999999999999999999999999876643 34445
Q ss_pred hccCCCCCCCeEEEEEEEEecCCCCCCccCCCChhhhHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCcc-ccccc---
Q 001052 921 FHSDNVYEIPNVRIMGNVCFTNFPSNTAFRGFGGPQGMLITENWIQRVAVEVRKSPEEIREINFQGEGSIL-HYGQQ--- 996 (1172)
Q Consensus 921 ~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~RG~G~~q~~fa~Es~mDelA~~lg~DP~e~R~~Nl~~~g~~~-~~g~~--- 996 (1172)
.+..++|+|||++++++.|+||++|+|||||||.||++|++|++||++|++|||||+|||++|++++++.. +++++
T Consensus 898 ~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~RG~G~pq~~fa~E~~mD~lA~~lg~DP~e~R~~Nl~~~~~~~~~~~~~~g~ 977 (1344)
T PLN00192 898 IGALKKYDWGALSFDIKVCKTNLSSRSAMRAPGEVQGSYIAEAIIEHVASTLSMDVDSVRKINLHTYESLKLFYGDSAGE 977 (1344)
T ss_pred hhcCCCcCCCceEEEEEEEECCCCCCCcccCCCHHHHHHHHHHHHHHHHHHhCcCHHHHHHhcCCCccccccCCCCcccc
Confidence 56779999999999999999999999999999999999999999999999999999999999999765432 45544
Q ss_pred ccCCCHHHHHHHHHhhcChHhhHHHHhhcccCCCcceeeeEEeeeecccccccccccccceEEEEeeCCeEEEEeCCccC
Q 001052 997 LQHCTLFPLWNELKLSCDFLNARKEVDNFNLNNRWKKRGIAMVPTKFGISFTLKLMNQAGALVHVYTDGTVLVTHGGVEM 1076 (1172)
Q Consensus 997 ~~~~~l~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~grGia~~~~~~g~~~~~~~~~~~~a~V~v~~DGsV~V~~g~~e~ 1076 (1172)
++++.+++||+++++.++|++|++++++||+.|+|+|||+++++..++.++ +++.|.|+|++||+|+|.+|++||
T Consensus 978 ~~~~~~~~~l~~~~~~~~~~~r~~~~~~~n~~~~~~krGig~~~~~~~~~~-----~~~~a~v~i~~DGsv~v~~G~~e~ 1052 (1344)
T PLN00192 978 PSEYTLPSIWDKLASSSEFKQRTEMVKEFNRSNKWKKRGISRVPIVHEVML-----RPTPGKVSILSDGSIAVEVGGIEI 1052 (1344)
T ss_pred cCCCcHHHHHHHHHHhcChHHHHHHHHHHhhcCCceEEEEEEEEEEEeccc-----cCCceEEEEeCCceEEEEECCCCC
Confidence 378899999999999999999998888999999999999999999888643 346799999999999999999999
Q ss_pred CCChHHHHHHHHHHHhCC--------CCCcEEEEeCCCCCCCCCccCcccchhHHhHHHHHHHHHHHHHHHHHHHHhC--
Q 001052 1077 GQGLHTKVAQVAASAFNI--------PLSSVFVSETSTDKVPNASPTAASASSDIYGAAVLDACEQIKARMEPIASKH-- 1146 (1172)
Q Consensus 1077 GQG~~T~~~QIaAe~Lgi--------p~e~V~v~~~dT~~~p~~~~t~~Sr~t~~~g~Av~~A~~~Lr~rL~~~aa~~-- 1146 (1172)
|||++|+++||+|++||+ |+|+|+|..+||+.+|++++|+|||+|++.|.||++||++|++||+++++++
T Consensus 1053 GQG~~T~~aQiaA~~LGi~~~~~~~ip~e~I~v~~~dT~~~p~~~~t~gSr~t~~~G~Av~~Ac~~l~~rl~~~a~~~~~ 1132 (1344)
T PLN00192 1053 GQGLWTKVKQMAAFGLGMIKCDGGEDLLDKIRVIQSDTLSMIQGGFTAGSTTSESSCEAVRLCCVILVERLKPIKERLQE 1132 (1344)
T ss_pred CCCHHHHHHHHHHHHhCCccccccCCChhhEEEEecCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999995 9999999999999999999999999999999999999999999999999987
Q ss_pred --CCCCHHHHHHHHh-ccccceeEEee
Q 001052 1147 --NFNSFAEKIIMFC-NILSSQVHVMF 1170 (1172)
Q Consensus 1147 --~~~~w~~~i~~~~-~~~~~~~~~~~ 1170 (1172)
++.+|.+++..++ ...++..++.|
T Consensus 1133 ~~~~~~~~~~~~~a~~~~~~L~a~~~~ 1159 (1344)
T PLN00192 1133 QMGSVTWDMLISQAYMQSVNLSASSYY 1159 (1344)
T ss_pred cCCCcCHHHHHHHhcCCCCCeEEEEEE
Confidence 6789999999885 34566777655
No 5
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=100.00 E-value=7.3e-150 Score=1418.35 Aligned_cols=707 Identities=23% Similarity=0.315 Sum_probs=623.1
Q ss_pred eEEEEEECCEEEEecCCCCCCcHHHHHhhCCCCCcccC-ccCCCCCceEEEEeccccCCCcccceeecccccchhccCCc
Q 001052 19 KEAILYVNGLRKVLPDGLAHLTLLEYLRDIGLTGTKLG-CGEGGCGACTVMVSRYDKKSKKCVHCAVNACLAPLYSLEGM 97 (1172)
Q Consensus 19 ~~i~~~~Ng~~~~~~~~~p~~~L~~~LR~~~l~g~k~g-C~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~ 97 (1172)
|.|+|+|||++++++ ++|+++||++||++||||+|.| |++|.||||||+||+ ++|+||++|+.+++|+
T Consensus 1 ~~i~~~vNg~~~~~~-~~~~~~l~~~LR~~~~~~~k~g~c~~g~CGaCtv~~dg----------~~v~sC~~~~~~~~g~ 69 (956)
T PRK09800 1 MIIHFTLNGAPQELT-VNPGENVQKLLFNMGMHSVRNSDDGFGFAGSDAIIFNG----------NIVNASLLIAAQLEKA 69 (956)
T ss_pred CeEEEEECCEEEEEe-cCCCCCHHHHHHHCCCCccccCCCCcccCCCCEEEECC----------eEEeHHHHHHHHcCCC
Confidence 468999999999997 9999999999999999999998 899999999999997 8999999999999999
Q ss_pred eEEEeecccCCCCCcCHHHHHHHHhCCCCCCCCchHHHHHHHHHHHhCCCCCCHHHHHHHhhcCccccCCChhHHHHHHH
Q 001052 98 HVITVEGVGNRKHGLHPIQESLVRSHGSQCGFCTPGFIMSMYSLLRSSQTPPTEEQIEESLAGNLCRCTGYRPIVDAFRV 177 (1172)
Q Consensus 98 ~i~T~Egl~~~~~~~~~iq~a~~~~~~~qCG~CtpG~vm~~~~ll~~~~~~~~~~~i~~~l~gnlCRCtgy~~i~~a~~~ 177 (1172)
+|+|||||+ ..+.|||+|+||+++|++|||||||||||++++||++++.| +++||+++|+|||||||||++|++|++.
T Consensus 70 ~i~Tvegl~-~~~~~~~~q~af~~~~~~QCG~CtpG~~m~~~~ll~~~~~p-~~~~i~~~l~gnlCRCtgy~~i~~av~~ 147 (956)
T PRK09800 70 DIRTAESLG-KWNELSLVQQAMVDVGVVQSGYNDPAAALIITDLLDRIAAP-TREEIDDALSGLFSRDAGWQQYYQVIEL 147 (956)
T ss_pred EEEecCCcC-CCCCCCHHHHHHHHcCCCcCCCChHHHHHHHHHHHhcCCCC-CHHHHHHHHhhchhccCCcHHHHHHHHH
Confidence 999999998 66789999999999999999999999999999999999999 9999999999999999999999999987
Q ss_pred HHhccccccccCCcccccCCccccCCCCCCCCCCCCCCCCCcccccccccCCccccccccccCCCCCCCCCcCCChhhhc
Q 001052 178 FAKTNDALYTNMSSMSLKEGEFVCPSTGKPCSCGMKNVSNADTCEKSVACGKTYEPVSYSEIDGSTYTEKELIFPPELLL 257 (1172)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~p~~l~~ 257 (1172)
++.... + . .
T Consensus 148 ~~~~~~---------------------~---------------~----------~------------------------- 156 (956)
T PRK09800 148 AVARKN---------------------N---------------P----------Q------------------------- 156 (956)
T ss_pred HHHhhc---------------------c---------------c----------c-------------------------
Confidence 652100 0 0 0
Q ss_pred cCCCCccccCCCCceEEecCCHHHHHHHHhhCCCcEEEeccCcceeeeeeccccCceEEecCCcccccceeecCCcEEEc
Q 001052 258 RKSNPLNLSGFGGLKWYRPLKLQHLLELKSKYPDSKLLVGNTEVGIEMRLKRMQYQVLISVTHVPELNVLNVKDDGLEIG 337 (1172)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~P~sl~eal~ll~~~~~a~lvaGgTdl~v~~k~~~~~~~~lIdl~~v~EL~~I~~~~~~l~IG 337 (1172)
T Consensus 157 -------------------------------------------------------------------------------- 156 (956)
T PRK09800 157 -------------------------------------------------------------------------------- 156 (956)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccHHHHHHHHHHhhhcCCCCccchHHHHHHHHHHhccccccccccccccccccCCCCChhHHHHhcCCEEEEEeCCCC
Q 001052 338 AAVRLTELLKMFRKVVTERPAHETSSCKAFIEQIKWFAGTQIKNVASVGGNICTASPISDLNPLWMASGAKFHIVDCKGN 417 (1172)
Q Consensus 338 A~vTl~~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp~sD~~~~Llal~A~v~l~s~~g~ 417 (1172)
. +
T Consensus 157 -------------~---~-------------------------------------------------------------- 158 (956)
T PRK09800 157 -------------A---T-------------------------------------------------------------- 158 (956)
T ss_pred -------------c---c--------------------------------------------------------------
Confidence 0 0
Q ss_pred eEEEehHhhhcccccccCCCCeEEEEEEccCCCCccceeeeeecccCccccceeeeEEEEEEecCCcceEEEEEEEEEcc
Q 001052 418 IRTTMAEEFFLGYRKVDLTSGEILLSIFLPWTRPFEFVKEFKQAHRRDDDIALVNAGMRVYLEEKDEEWVVSDALLVYGG 497 (1172)
Q Consensus 418 ~R~vpl~dF~~g~~~t~L~~~Eil~~I~iP~~~~~~~~~~~K~~~R~~~dia~v~~A~~~~~~~~~~~~~i~~~ria~Gg 497 (1172)
. . ...+
T Consensus 159 ----------------~------------------~-------------------------~~~~--------------- 164 (956)
T PRK09800 159 ----------------I------------------D-------------------------IAPT--------------- 164 (956)
T ss_pred ----------------c------------------c-------------------------cccc---------------
Confidence 0 0 0000
Q ss_pred CCCccccHHHHHHHhcCCCCCHHHHHHHHHhhccccccCCCCCCCChhHHHHHHHHHHHHHHHHHhhhccCCCCcccCCC
Q 001052 498 VAPLSLSAKKTKTFIVGKSWSQELLQNALKILQTDIILKEDAPGGMVDFRKSLTLSFFFKFFLWVSHQMEGKNSIKESVP 577 (1172)
Q Consensus 498 v~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~e~~~~~~~~~~saeYR~~la~~L~~r~l~~~~~~~~~~~~~~~~~~ 577 (1172)
T Consensus 165 -------------------------------------------------------------------------------- 164 (956)
T PRK09800 165 -------------------------------------------------------------------------------- 164 (956)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccCCCccccccccccCCCCccCCcccccCccccccceeeccccCCCCCCcEEEEEEecCCCCeEeeccChh
Q 001052 578 STHLSAMQSFHRPSIIGNQDYEITKHGTSVGSPEVHLSSRLQVTGEAEYTDDTPMPPNCLHAALVLSRRPHARILSIDDS 657 (1172)
Q Consensus 578 ~~~~s~~~~~~r~~~~~~q~~~~~~~~~~vG~~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~sID~s 657 (1172)
.+++++.||++++|+|+..||||+++|++|+.+ |||||++++|||++||||++||+|
T Consensus 165 ----------------------~~~~~~~VGk~~~R~d~~~kvtG~a~Y~~D~~~-pgmL~a~vvrSp~ahArI~sID~s 221 (956)
T PRK09800 165 ----------------------FRDDLEVIGKHYPKTDAAKMVQAKPCYVEDRVT-ADACVIKMLRSPHAHALITHLDVS 221 (956)
T ss_pred ----------------------cccccccCCCCCCCcChHhhCcccccccccCCC-CCCEEEEEeecCCCcEEEeeeEHH
Confidence 001234699999999999999999999999987 799999999999999999999999
Q ss_pred hhccCCCEEEEEecCCCCC------CCCCCCCCCCccccccCeEEecCCeEEEEEECCHHHHHHhcccCeeEEecCCccC
Q 001052 658 GARSSPGFVGIFFAEDVQG------DNRIGPVVADEELFASEVVTCVGQVIGVVVAETHEEAKLASRKVQVEYEELPAIL 731 (1172)
Q Consensus 658 ~A~~~pGVv~Vvt~~Dipg------~n~~~~~~~d~~~la~~~V~y~GqpVa~VvAet~~~A~~Aa~~V~V~ye~lp~v~ 731 (1172)
+|++||||++|+|++|+|. .+.++....+.++|++++|||+|||||+|||+|+++|++|+++|+|+||+||+++
T Consensus 222 ~A~a~pGV~~Vvt~~Dvp~~~~~~~~~~~~~~~~~~~~l~~~~Vry~G~~vaaVvAet~~~A~~A~~~V~Veye~Lp~v~ 301 (956)
T PRK09800 222 KAEALPGVVHVITHLNCPDIYYTPGGQSAPEPSPLDRRMFGKKMRHVGDRVAAVVAESEEIALEALKLIDVEYEVLKPVM 301 (956)
T ss_pred HHHhCCCeEEEEcHHHCCcccccccCcCCCCCCCCCccccCCeEEEcCCeEEEEEECCHHHHHHHhcCCceEEEeCCccC
Confidence 9999999999999999983 2222222223444669999999999999999999999999999999999999999
Q ss_pred CHHHHhhcCCC--CCC-----------------------------------------CccccccCCcccccccCCCcEEE
Q 001052 732 SIQEAIDAKSF--HPN-----------------------------------------TERCFRKGDVDICFQSGQCDKII 768 (1172)
Q Consensus 732 ~~~~A~~~~a~--~~~-----------------------------------------~~~~~~~Gd~e~af~~~~a~~vv 768 (1172)
|+++|++++++ |+. ......+||++++| ++|+++|
T Consensus 302 d~~~Al~~~a~~vh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Nv~~~~~~~~Gd~~~af--~~a~~vv 379 (956)
T PRK09800 302 SIDEAMAEDAPVVHDEPVVYVAGAPDTLEDDNSHAAQRGEHMIINFPIGSRPRKNIAASIHGHIGDMDKGF--ADADVII 379 (956)
T ss_pred CHHHHhcCCCceecccccccccccccccccccccccccccccccccccccCCCCceeeeccccCCCHHHHH--hhCCEEE
Confidence 99999988873 320 01224679999999 9999999
Q ss_pred EEEEEECcccccCCCCCeEEEEEecCCCeEEEEeCCCChHHHHHHHHHHhCCCCccEEEEeCccCCCCCCCCCcchHHHH
Q 001052 769 EGEVRVGGQEHFYLEPHSSVVWTMDHGNEVHMISSTQAPQKHQKYVSHVLGLPMSKVVCKTKRIGGGFGGKETRSAFIAA 848 (1172)
Q Consensus 769 e~~y~~~~~~H~~mEp~~a~A~~~~~~g~l~V~~stQ~p~~~r~~vA~~Lglp~~kV~V~~~~vGGgFG~K~~~~~~~~~ 848 (1172)
|++|++++|+|+||||++|+|+|+ +|+|+||+|||+|+.+|..||++||||++||||+.+++|||||+|.+.. .+.
T Consensus 380 e~~y~~~~~~H~~mEp~~aiA~~d--~~~l~v~~stQ~p~~~r~~vA~~LGlp~~kVrV~~~~vGGgFG~K~~~~--~e~ 455 (956)
T PRK09800 380 ERTYNSTQAQQCPTETHICFTRMD--GDRLVIHASTQVPWHLRRQVARLVGMKQHKVHVIKERVGGGFGSKQDIL--LEE 455 (956)
T ss_pred EEEEEeCCcccccCCCceEEEEEe--CCeeEEEECCCcHHHHHHHHHHHHCCCHHHeEEEcCCCCccCcCccccc--HHH
Confidence 999999999999999999999998 4589999999999999999999999999999999999999999998633 456
Q ss_pred HHHHHHHhCCCCEEEEeChhhhhhhcCCCCceEEEEEEeeCCCCcEEEEEEeEEecCCCCCCchHHHHHHHhhccCCCCC
Q 001052 849 AAAVPSFLLNRPVNLTLDRDIDMMISGQRHSFLGKYKVGFTNEGKVLALDLEIYNNAGNSLDLSLAVLERAMFHSDNVYE 928 (1172)
Q Consensus 849 ~aAlaA~k~gRPVkl~~tR~E~~~~~~~R~~~~~~~k~g~d~dG~i~a~~~~~~~d~Ga~~~~s~~v~~~~~~~~~~~Y~ 928 (1172)
.||++|+++||||||+|||+|+|.++++||++.+++|+|+|+||+|+|++++++.|+|+|.+++..+...+..+..++|+
T Consensus 456 ~aA~aA~~~grPVkl~~tReE~~~~~~~R~~~~~~~k~g~d~dG~I~a~~~~~~~d~Gay~~~~~~v~~~~~~~~~~~Y~ 535 (956)
T PRK09800 456 VCAWATCVTGRPVLFRYTREEEFIANTSRHVAKVTVKLGAKKDGRLTAVKMDFRANTGPYGNHSLTVPCNGPALSLPLYP 535 (956)
T ss_pred HHHHHHHHhCCCEEEEeeHHHHhhCcCCCCceEEEEEEEECCCCCEEEEEEEEEEcCCcCCCcchHHHHHHHhhcCcCcc
Confidence 68999999999999999999999999999999999999999999999999999999999988777777666666778999
Q ss_pred CCeEEEEEEEEecCCCCCCccCCCChhhhHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCcccc-----------ccc-
Q 001052 929 IPNVRIMGNVCFTNFPSNTAFRGFGGPQGMLITENWIQRVAVEVRKSPEEIREINFQGEGSILHY-----------GQQ- 996 (1172)
Q Consensus 929 ipn~~~~~~~v~TN~~~~ga~RG~G~~q~~fa~Es~mDelA~~lg~DP~e~R~~Nl~~~g~~~~~-----------g~~- 996 (1172)
|||++++++.++||++|+|+|||||.||+.|++|++||++|++|||||+|||+||++++|+.+++ +.+
T Consensus 536 ipn~~~~~~~v~TN~~p~ga~RG~G~pq~~fa~Es~mDelA~~lg~DPve~R~rN~~~~gd~~~~~~~~~~g~~~~~~~~ 615 (956)
T PRK09800 536 CDNVDFQVTTYYSNICPNGAYQGYGAPKGNFAITMALAELAEQLQIDQLEIIERNRVHEGQELKILGAIGEGKAPTSVPS 615 (956)
T ss_pred cceEEEEEEEEECCCCCCCCcCCCCcchHHHHHHHHHHHHHHHhCcCHHHHHHHhCCCCCcccccccccccccccccCcc
Confidence 99999999999999999999999999999999999999999999999999999999998876543 223
Q ss_pred ccCCCHHHHHHHHHhhcChHhhHHHHhhcccCCCcc-eeeeEEeeeecccccccccccccceEEEEeeCCeEEEEeCCcc
Q 001052 997 LQHCTLFPLWNELKLSCDFLNARKEVDNFNLNNRWK-KRGIAMVPTKFGISFTLKLMNQAGALVHVYTDGTVLVTHGGVE 1075 (1172)
Q Consensus 997 ~~~~~l~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~-grGia~~~~~~g~~~~~~~~~~~~a~V~v~~DGsV~V~~g~~e 1075 (1172)
++++.+.+||+++++.++|+++++ ..++|+ |+|+++....+|.+. .+.+.+.|+|++||+|+|.+|++|
T Consensus 616 ~~s~~~~~~L~~~~e~~~w~~~~~------~~g~~~~G~Gia~~~~~~g~~~----~~~~~a~v~l~~dGsv~v~~g~~e 685 (956)
T PRK09800 616 AASCALEEILRQGREMIQWSSPKP------QNGDWHIGRGVAIIMQKSGIPD----IDQANCMIKLESDGTFIVHSGGAD 685 (956)
T ss_pred ccCCCHHHHHHHHHHhcCcchhhh------hcCCCeeEEEEEEEEEcccCCC----CCCceEEEEECCCceEEEEECCCC
Confidence 567889999999999999987532 124444 677766654444321 235678999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCCccCcccchhHHhHHHHHHHHHHHHHHHHHHHHhCCC-------
Q 001052 1076 MGQGLHTKVAQVAASAFNIPLSSVFVSETSTDKVPNASPTAASASSDIYGAAVLDACEQIKARMEPIASKHNF------- 1148 (1172)
Q Consensus 1076 ~GQG~~T~~~QIaAe~Lgip~e~V~v~~~dT~~~p~~~~t~~Sr~t~~~g~Av~~A~~~Lr~rL~~~aa~~~~------- 1148 (1172)
||||+.|+++||+|++||+|+|+|+|..+||+.+|++++|+|||+|++.|.||++||++||+||+.+++++.+
T Consensus 686 ~GqG~~T~~~QiaAe~LGip~d~V~v~~~DT~~~p~~~gt~aSr~t~~~G~Av~~Aa~~l~~kl~~~aa~~l~~~~~~~~ 765 (956)
T PRK09800 686 IGTGLDTVVTKLAAEVLHCPPQDVHVISGDTDHALFDKGAYASSGTCFSGNAARLAAENLREKILFHGAQMLGEPVADVQ 765 (956)
T ss_pred CCccHHHHHHHHHHHHHCCCceeEEEEeCCCCCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999877522
Q ss_pred -------------CCHHHHHHHHhc
Q 001052 1149 -------------NSFAEKIIMFCN 1160 (1172)
Q Consensus 1149 -------------~~w~~~i~~~~~ 1160 (1172)
.+|.++...++.
T Consensus 766 ~~~~g~~~~~~~~~~~~~~~~~~~~ 790 (956)
T PRK09800 766 LATPGVVRGKKGEVSFGDIAHKGET 790 (956)
T ss_pred EecCCEEeCCCCcccHHHHHHHHhc
Confidence 468888876643
No 6
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=100.00 E-value=2e-147 Score=1398.09 Aligned_cols=689 Identities=25% Similarity=0.358 Sum_probs=608.7
Q ss_pred EEECCEEEEecCCCCCCcHHHHHhhCCCCCccc-CccCCCCCceEEEEeccccCCCcccceeecccccchhccCCceEEE
Q 001052 23 LYVNGLRKVLPDGLAHLTLLEYLRDIGLTGTKL-GCGEGGCGACTVMVSRYDKKSKKCVHCAVNACLAPLYSLEGMHVIT 101 (1172)
Q Consensus 23 ~~~Ng~~~~~~~~~p~~~L~~~LR~~~l~g~k~-gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~T 101 (1172)
|+|||++++++ ++|+++|+++||++||||+|. ||++|.|||||||||+ ++|+||++|+.+++|++|+|
T Consensus 1 ~~~Ng~~~~~~-~~~~~~l~~~LR~~~l~~~k~~~c~~g~CGaCtv~~dg----------~~v~sC~~~~~~~~g~~i~T 69 (951)
T TIGR03313 1 FTLNGAPQTLE-CKLGENVQTLLFNMGMHSVRNSDDGFGFAGSDAILFNG----------VLKNASLLIAAQLEGAEVRT 69 (951)
T ss_pred CEECCEEEEEe-cCCCCCHHHHHHHCCCCCCcCCCCCcccCCCCEEEECC----------eEeeHHHHHHHHcCCCEEEe
Confidence 78999999997 999999999999999999999 7999999999999997 89999999999999999999
Q ss_pred eecccCCCCCcCHHHHHHHHhCCCCCCCCchHHHHHHHHHHHhCCCCCCHHHHHHHhhcCccccCCChhHHHHHHHHHhc
Q 001052 102 VEGVGNRKHGLHPIQESLVRSHGSQCGFCTPGFIMSMYSLLRSSQTPPTEEQIEESLAGNLCRCTGYRPIVDAFRVFAKT 181 (1172)
Q Consensus 102 ~Egl~~~~~~~~~iq~a~~~~~~~qCG~CtpG~vm~~~~ll~~~~~~~~~~~i~~~l~gnlCRCtgy~~i~~a~~~~~~~ 181 (1172)
||||+ ..+.|||+|++|++++++|||||||||||++++||+++|.| +++||+++|+|||||||||++|++|++.++..
T Consensus 70 iegl~-~~~~~~~~q~af~~~~a~QCG~CtpG~~~~~~~ll~~~~~p-~~~~i~~~l~gnlcrctgy~~i~~av~~~~~~ 147 (951)
T TIGR03313 70 AESLG-QWNQLSLVQQAMVDVGVVQSGYNDPAAALILTDLLDRNTQP-NRAEIDDALSGLFSRDAGYQQFYQVIELAVKR 147 (951)
T ss_pred cCcCC-CCCCCCHHHHHHHHcCCCcCCCChHHHHHHHHHHHhcCCCC-CHHHHHHHHhcceeccCCcHHHHHHHHHHHHh
Confidence 99998 66789999999999999999999999999999999999999 99999999999999999999999999876521
Q ss_pred cccccccCCcccccCCccccCCCCCCCCCCCCCCCCCcccccccccCCccccccccccCCCCCCCCCcCCChhhhccCCC
Q 001052 182 NDALYTNMSSMSLKEGEFVCPSTGKPCSCGMKNVSNADTCEKSVACGKTYEPVSYSEIDGSTYTEKELIFPPELLLRKSN 261 (1172)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~p~~l~~~~~~ 261 (1172)
.. + + +
T Consensus 148 ~~---------------------~---------------~----------~----------------------------- 152 (951)
T TIGR03313 148 LK---------------------D---------------P----------E----------------------------- 152 (951)
T ss_pred cc---------------------c---------------c----------c-----------------------------
Confidence 00 0 0 0
Q ss_pred CccccCCCCceEEecCCHHHHHHHHhhCCCcEEEeccCcceeeeeeccccCceEEecCCcccccceeecCCcEEEccccc
Q 001052 262 PLNLSGFGGLKWYRPLKLQHLLELKSKYPDSKLLVGNTEVGIEMRLKRMQYQVLISVTHVPELNVLNVKDDGLEIGAAVR 341 (1172)
Q Consensus 262 ~~~~~~~~~~~~~~P~sl~eal~ll~~~~~a~lvaGgTdl~v~~k~~~~~~~~lIdl~~v~EL~~I~~~~~~l~IGA~vT 341 (1172)
+
T Consensus 153 -----~-------------------------------------------------------------------------- 153 (951)
T TIGR03313 153 -----H-------------------------------------------------------------------------- 153 (951)
T ss_pred -----c--------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHhhhcCCCCccchHHHHHHHHHHhccccccccccccccccccCCCCChhHHHHhcCCEEEEEeCCCCeEEE
Q 001052 342 LTELLKMFRKVVTERPAHETSSCKAFIEQIKWFAGTQIKNVASVGGNICTASPISDLNPLWMASGAKFHIVDCKGNIRTT 421 (1172)
Q Consensus 342 l~~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp~sD~~~~Llal~A~v~l~s~~g~~R~v 421 (1172)
+
T Consensus 154 ---------~---------------------------------------------------------------------- 154 (951)
T TIGR03313 154 ---------K---------------------------------------------------------------------- 154 (951)
T ss_pred ---------c----------------------------------------------------------------------
Confidence 0
Q ss_pred ehHhhhcccccccCCCCeEEEEEEccCCCCccceeeeeecccCccccceeeeEEEEEEecCCcceEEEEEEEEEccCCCc
Q 001052 422 MAEEFFLGYRKVDLTSGEILLSIFLPWTRPFEFVKEFKQAHRRDDDIALVNAGMRVYLEEKDEEWVVSDALLVYGGVAPL 501 (1172)
Q Consensus 422 pl~dF~~g~~~t~L~~~Eil~~I~iP~~~~~~~~~~~K~~~R~~~dia~v~~A~~~~~~~~~~~~~i~~~ria~Ggv~~~ 501 (1172)
..
T Consensus 155 ------------------------------------------------------------~~------------------ 156 (951)
T TIGR03313 155 ------------------------------------------------------------QS------------------ 156 (951)
T ss_pred ------------------------------------------------------------cc------------------
Confidence 00
Q ss_pred cccHHHHHHHhcCCCCCHHHHHHHHHhhccccccCCCCCCCChhHHHHHHHHHHHHHHHHHhhhccCCCCcccCCCcccc
Q 001052 502 SLSAKKTKTFIVGKSWSQELLQNALKILQTDIILKEDAPGGMVDFRKSLTLSFFFKFFLWVSHQMEGKNSIKESVPSTHL 581 (1172)
Q Consensus 502 p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~e~~~~~~~~~~saeYR~~la~~L~~r~l~~~~~~~~~~~~~~~~~~~~~~ 581 (1172)
.. ++
T Consensus 157 -------------------------------~~-~~-------------------------------------------- 160 (951)
T TIGR03313 157 -------------------------------IA-PE-------------------------------------------- 160 (951)
T ss_pred -------------------------------cc-Cc--------------------------------------------
Confidence 00 00
Q ss_pred cccccccCCCccccccccccCCCCccCCcccccCccccccceeeccccCCCCCCcEEEEEEecCCCCeEeeccChhhhcc
Q 001052 582 SAMQSFHRPSIIGNQDYEITKHGTSVGSPEVHLSSRLQVTGEAEYTDDTPMPPNCLHAALVLSRRPHARILSIDDSGARS 661 (1172)
Q Consensus 582 s~~~~~~r~~~~~~q~~~~~~~~~~vG~~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~sID~s~A~~ 661 (1172)
.+++++.||++++|+|+..||||+++|++|+.+ |||||++++|||++||||++||+|+|++
T Consensus 161 ------------------~~~~~~~iGk~~~R~d~~~kvtG~a~Y~~D~~~-pgmL~a~v~rSP~ahArI~sID~s~A~a 221 (951)
T TIGR03313 161 ------------------FRDDLTIIGKNCPKIDAAKMVQAKPCYVEDRVP-ADACVIKMLRSPHPHAWITHLDVSKAEA 221 (951)
T ss_pred ------------------cccccccCCCCCcCcChHhhCccCccccccCCC-CCCEEEEEEecCCCcEEEEeeEHHHHHh
Confidence 001234699999999999999999999999987 7999999999999999999999999999
Q ss_pred CCCEEEEEecCCCCC------CCCCCCCCCCccccccCeEEecCCeEEEEEECCHHHHHHhcccCeeEEecCCccCCHHH
Q 001052 662 SPGFVGIFFAEDVQG------DNRIGPVVADEELFASEVVTCVGQVIGVVVAETHEEAKLASRKVQVEYEELPAILSIQE 735 (1172)
Q Consensus 662 ~pGVv~Vvt~~Dipg------~n~~~~~~~d~~~la~~~V~y~GqpVa~VvAet~~~A~~Aa~~V~V~ye~lp~v~~~~~ 735 (1172)
||||++|+|++|+|. .+.++....++++|++++|||+||||++|||+|+|+|++|+++|+|+||+||+++|+++
T Consensus 222 ~pGV~~Vvt~~D~p~~~~~~~~~~~~~~~~~~~~l~~~~Vry~G~~vaaVvAet~~~A~~A~~~I~Veye~Lp~v~d~~~ 301 (951)
T TIGR03313 222 LPGVVHVITHLNCPDIYYTPGGQSAPEPSPLDRRMFGQKMRHVGDRVAAVVAESEEIALHALKLIEVEYDVLTPVMSIDE 301 (951)
T ss_pred CCCeEEEEeHHHCCccccCCCCccCCCCCCCcccccCCeEEEcCCEEEEEEECCHHHHHHHhcCCeeEEEeCCccCCHHH
Confidence 999999999999983 12222112234557899999999999999999999999999999999999999999999
Q ss_pred HhhcCCC--CCCC-----------------------------------------ccccccCCcccccccCCCcEEEEEEE
Q 001052 736 AIDAKSF--HPNT-----------------------------------------ERCFRKGDVDICFQSGQCDKIIEGEV 772 (1172)
Q Consensus 736 A~~~~a~--~~~~-----------------------------------------~~~~~~Gd~e~af~~~~a~~vve~~y 772 (1172)
|++++++ |+.. ....++||++++| ++|+++||++|
T Consensus 302 Al~~~ap~ih~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Nv~~~~~~~~Gd~~~af--~~A~~vve~~y 379 (951)
T TIGR03313 302 AMAAEAPIVHDEPIVYGAGAPDDLEEQNANADPRGEHMIINFPIGSRPRKNIAASVHGHIGDLNKGF--AEADVIIERTY 379 (951)
T ss_pred HhcCCCCeeccccccccccccccccccccccccccccccccccccccCCCceeeeccccCCCHHHHH--hcCCEEEEEEE
Confidence 9988873 3210 1124679999999 99999999999
Q ss_pred EECcccccCCCCCeEEEEEecCCCeEEEEeCCCChHHHHHHHHHHhCCCCccEEEEeCccCCCCCCCCCcchHHHHHHHH
Q 001052 773 RVGGQEHFYLEPHSSVVWTMDHGNEVHMISSTQAPQKHQKYVSHVLGLPMSKVVCKTKRIGGGFGGKETRSAFIAAAAAV 852 (1172)
Q Consensus 773 ~~~~~~H~~mEp~~a~A~~~~~~g~l~V~~stQ~p~~~r~~vA~~Lglp~~kV~V~~~~vGGgFG~K~~~~~~~~~~aAl 852 (1172)
++++|+|+||||++|+|+|+ +|+++||+|||+|+.+|..||++||||++||||+.+++|||||+|.+.. .+..||+
T Consensus 380 ~~~~~~H~~mEp~~aiA~~d--~~~l~V~~stQ~p~~~r~~vA~~Lglp~~kVrV~~~~vGGgFG~K~~~~--~e~~aA~ 455 (951)
T TIGR03313 380 ESTQAQQCPTETHICFTYMD--GERLVIHASTQVPWHVRRQVARIVGMKQHKVHVIKERVGGGFGSKQDIL--LEEVCAW 455 (951)
T ss_pred EECCEeeecCCCceEEEEEc--CCeEEEEECCcCHHHHHHHHHHHHCCCHHHeEEEcCCCCcCcCCccccc--HHHHHHH
Confidence 99999999999999999997 4589999999999999999999999999999999999999999998643 4456899
Q ss_pred HHHhCCCCEEEEeChhhhhhhcCCCCceEEEEEEeeCCCCcEEEEEEeEEecCCCCCCchHHHHHHHhhccCCCCCCCeE
Q 001052 853 PSFLLNRPVNLTLDRDIDMMISGQRHSFLGKYKVGFTNEGKVLALDLEIYNNAGNSLDLSLAVLERAMFHSDNVYEIPNV 932 (1172)
Q Consensus 853 aA~k~gRPVkl~~tR~E~~~~~~~R~~~~~~~k~g~d~dG~i~a~~~~~~~d~Ga~~~~s~~v~~~~~~~~~~~Y~ipn~ 932 (1172)
+|+++||||||+|||+|+|+++++||++.+++|+|+|+||+|+|++++++.|+|+|.+.+..+.........++|+|||+
T Consensus 456 aA~~~GrPVkl~~tReE~~~~~~~R~~~~~~~k~g~d~dG~I~A~~~~~~~d~Gay~~~~~~v~~~~~~~~~~~Y~ipn~ 535 (951)
T TIGR03313 456 ATWVTGRPVYFRYTREEEFICNTSRHVAKVTVKLGAKKDGKLTAIDMDFRANTGPYGNHSLTVPSNGPALSLPLYPCDNV 535 (951)
T ss_pred HHHHhCCCEEEEeeHHHHhhccCCCCCeEEEEEEEECCCCcEEEEEEEEEEcCccCcccchHHhhhhhhhcCcCccCCeE
Confidence 99999999999999999999999999999999999999999999999999999999876666554444555689999999
Q ss_pred EEEEEEEecCCCCCCccCCCChhhhHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCccc-----------cccc-ccCC
Q 001052 933 RIMGNVCFTNFPSNTAFRGFGGPQGMLITENWIQRVAVEVRKSPEEIREINFQGEGSILH-----------YGQQ-LQHC 1000 (1172)
Q Consensus 933 ~~~~~~v~TN~~~~ga~RG~G~~q~~fa~Es~mDelA~~lg~DP~e~R~~Nl~~~g~~~~-----------~g~~-~~~~ 1000 (1172)
+++++.++||++|.|||||||.+|+.|++|++||++|++|||||+|||+||++++|+.++ ++.+ ++++
T Consensus 536 ~~~~~~v~TN~~p~ga~Rg~G~~q~~fa~Es~mDelA~~lG~DP~e~R~rN~~~~gd~~~~~~~~~~g~~~~~~~~~~s~ 615 (951)
T TIGR03313 536 DFRVTTYYSNICPTGAYQGYGAPKGNFALTMAMAELAEELGIDQLEMIETNRVHEGQELKILGAIGEGKMPTSVPKAASC 615 (951)
T ss_pred EEEEEEEECCCCCCCCcCCCCcccHHHHHHHHHHHHHHHhCcCHHHHHHHhCCCCCcccccccccccccccccccccCCC
Confidence 999999999999999999999999999999999999999999999999999999987663 2233 4577
Q ss_pred CHHHHHHHHHhhcChHhhHHHHhhcccCCCcc-eeeeEEeeeecccccccccccccceEEEEeeCCeEEEEeCCccCCCC
Q 001052 1001 TLFPLWNELKLSCDFLNARKEVDNFNLNNRWK-KRGIAMVPTKFGISFTLKLMNQAGALVHVYTDGTVLVTHGGVEMGQG 1079 (1172)
Q Consensus 1001 ~l~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~-grGia~~~~~~g~~~~~~~~~~~~a~V~v~~DGsV~V~~g~~e~GQG 1079 (1172)
++.+||++++++++|+++++ ..++|+ |+|+++....+|.+. .+.+.+.|+|++||+|.|.+|.+|||||
T Consensus 616 ~~~~~l~~~~~~~~w~~~~~------~~g~~~~G~Gia~~~~~~g~~~----~~~~~a~v~l~~dG~v~v~~g~~e~GqG 685 (951)
T TIGR03313 616 ALEEILRQGRELIEWDSPKQ------AKGDWKIGRGVAIIMQKSGIPD----IDQANCMIKLESDGTFIVHSGGADIGTG 685 (951)
T ss_pred cHHHHHHHHHHhcCccchhh------hccCceeeeEEEEEEecccCCC----CCCccEEEEEcCCceEEEEECCCCCCcc
Confidence 89999999999999987542 124554 677766544444321 2457789999999999999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCCccCcccchhHHhHHHHHHHHHHHHHHHHHHHHhC
Q 001052 1080 LHTKVAQVAASAFNIPLSSVFVSETSTDKVPNASPTAASASSDIYGAAVLDACEQIKARMEPIASKH 1146 (1172)
Q Consensus 1080 ~~T~~~QIaAe~Lgip~e~V~v~~~dT~~~p~~~~t~~Sr~t~~~g~Av~~A~~~Lr~rL~~~aa~~ 1146 (1172)
+.|+++||+|++||+|+|+|+|..+||+.+|++++|+|||+|++.|.|+++||++||+||+.+|+++
T Consensus 686 ~~T~~~QiaAe~LGvp~d~V~v~~~DT~~~p~~~gt~aSr~t~~~G~Av~~Aa~~l~~kl~~~aa~~ 752 (951)
T TIGR03313 686 LDTVVSKLTAEVLHCPMDDVHVISGDTDHALFDKGAYASSGTCFSGNAAKRAAENLREKILFHGAEM 752 (951)
T ss_pred HHHHHHHHHHHHHCCCHHhEEEEeCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999988765
No 7
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=100.00 E-value=3.6e-146 Score=1379.77 Aligned_cols=670 Identities=32% Similarity=0.487 Sum_probs=601.6
Q ss_pred EEEEECCEEEEecCCCCCCcHHHHHhhC-CCCCcccCccCCCCCceEEEEeccccCCCcccceeecccccchhccCCceE
Q 001052 21 AILYVNGLRKVLPDGLAHLTLLEYLRDI-GLTGTKLGCGEGGCGACTVMVSRYDKKSKKCVHCAVNACLAPLYSLEGMHV 99 (1172)
Q Consensus 21 i~~~~Ng~~~~~~~~~p~~~L~~~LR~~-~l~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i 99 (1172)
++|+|||+.++ ++|+++|++|||+. ||||||.||++|.|||||||||+ ++++||++|+.+++|++|
T Consensus 1 ~~~~~ng~~~~---~~~~~~l~~~lr~~~~~~~~k~gc~~g~cgactv~~dg----------~~~~sc~~~~~~~~g~~i 67 (848)
T TIGR03311 1 YEFIVNGREVD---VNEEKKLLEFLREDLRLTGVKNGCGEGACGACTVIVNG----------KAVRACRFTTAKLAGKEI 67 (848)
T ss_pred CEEEECCEEee---CCCCCcHHHHHHHhcCCCcCCCCCCCCCCCCcEEEECC----------eEEehhhhhHHhcCCCEE
Confidence 36999998543 67999999999985 99999999999999999999997 899999999999999999
Q ss_pred EEeecccCCCCCcCHHHHHHHHhCCCCCCCCchHHHHHHHHHHHhCCCCCCHHHHHHHhhcCccccCCChhHHHHHHHHH
Q 001052 100 ITVEGVGNRKHGLHPIQESLVRSHGSQCGFCTPGFIMSMYSLLRSSQTPPTEEQIEESLAGNLCRCTGYRPIVDAFRVFA 179 (1172)
Q Consensus 100 ~T~Egl~~~~~~~~~iq~a~~~~~~~qCG~CtpG~vm~~~~ll~~~~~~~~~~~i~~~l~gnlCRCtgy~~i~~a~~~~~ 179 (1172)
+|||||+ . ..+||+|+||+++|++|||||||||||++++||+++|.| +++||+++|+|||||||||++|++|++.++
T Consensus 68 ~T~egl~-~-~~~~~~q~a~~~~~~~qcG~ctpg~~~~~~~ll~~~~~p-~~~~i~~~l~gnlcrctgy~~i~~a~~~~~ 144 (848)
T TIGR03311 68 TTVEGLT-E-REKDVYAWAFAKAGAVQCGFCIPGMVISAKALLDKNPNP-TEAEIKKALKGNICRCTGYVKIIKAVRLAA 144 (848)
T ss_pred EecCCCC-C-CCCCHHHHHHHHcCCCcCCCCchhHHHHHHHHHhcCCCC-CHHHHHHHHhcCccccCChHHHHHHHHHHH
Confidence 9999998 3 357999999999999999999999999999999999999 999999999999999999999999999765
Q ss_pred hccccccccCCcccccCCccccCCCCCCCCCCCCCCCCCcccccccccCCccccccccccCCCCCCCCCcCCChhhhccC
Q 001052 180 KTNDALYTNMSSMSLKEGEFVCPSTGKPCSCGMKNVSNADTCEKSVACGKTYEPVSYSEIDGSTYTEKELIFPPELLLRK 259 (1172)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~p~~l~~~~ 259 (1172)
.... +
T Consensus 145 ~~~~---------------------~------------------------------------------------------ 149 (848)
T TIGR03311 145 KAFR---------------------E------------------------------------------------------ 149 (848)
T ss_pred Hhhc---------------------c------------------------------------------------------
Confidence 2100 0
Q ss_pred CCCccccCCCCceEEecCCHHHHHHHHhhCCCcEEEeccCcceeeeeeccccCceEEecCCcccccceeecCCcEEEccc
Q 001052 260 SNPLNLSGFGGLKWYRPLKLQHLLELKSKYPDSKLLVGNTEVGIEMRLKRMQYQVLISVTHVPELNVLNVKDDGLEIGAA 339 (1172)
Q Consensus 260 ~~~~~~~~~~~~~~~~P~sl~eal~ll~~~~~a~lvaGgTdl~v~~k~~~~~~~~lIdl~~v~EL~~I~~~~~~l~IGA~ 339 (1172)
.
T Consensus 150 -------~------------------------------------------------------------------------ 150 (848)
T TIGR03311 150 -------E------------------------------------------------------------------------ 150 (848)
T ss_pred -------c------------------------------------------------------------------------
Confidence 0
Q ss_pred ccHHHHHHHHHHhhhcCCCCccchHHHHHHHHHHhccccccccccccccccccCCCCChhHHHHhcCCEEEEEeCCCCeE
Q 001052 340 VRLTELLKMFRKVVTERPAHETSSCKAFIEQIKWFAGTQIKNVASVGGNICTASPISDLNPLWMASGAKFHIVDCKGNIR 419 (1172)
Q Consensus 340 vTl~~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp~sD~~~~Llal~A~v~l~s~~g~~R 419 (1172)
+ +
T Consensus 151 -----------~----------------------------------------------------------------~--- 152 (848)
T TIGR03311 151 -----------I----------------------------------------------------------------E--- 152 (848)
T ss_pred -----------c----------------------------------------------------------------c---
Confidence 0 0
Q ss_pred EEehHhhhcccccccCCCCeEEEEEEccCCCCccceeeeeecccCccccceeeeEEEEEEecCCcceEEEEEEEEEccCC
Q 001052 420 TTMAEEFFLGYRKVDLTSGEILLSIFLPWTRPFEFVKEFKQAHRRDDDIALVNAGMRVYLEEKDEEWVVSDALLVYGGVA 499 (1172)
Q Consensus 420 ~vpl~dF~~g~~~t~L~~~Eil~~I~iP~~~~~~~~~~~K~~~R~~~dia~v~~A~~~~~~~~~~~~~i~~~ria~Ggv~ 499 (1172)
+
T Consensus 153 -----------------------------~-------------------------------------------------- 153 (848)
T TIGR03311 153 -----------------------------P-------------------------------------------------- 153 (848)
T ss_pred -----------------------------c--------------------------------------------------
Confidence 0
Q ss_pred CccccHHHHHHHhcCCCCCHHHHHHHHHhhccccccCCCCCCCChhHHHHHHHHHHHHHHHHHhhhccCCCCcccCCCcc
Q 001052 500 PLSLSAKKTKTFIVGKSWSQELLQNALKILQTDIILKEDAPGGMVDFRKSLTLSFFFKFFLWVSHQMEGKNSIKESVPST 579 (1172)
Q Consensus 500 ~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~e~~~~~~~~~~saeYR~~la~~L~~r~l~~~~~~~~~~~~~~~~~~~~ 579 (1172)
+...
T Consensus 154 ------------------------------------~~~~---------------------------------------- 157 (848)
T TIGR03311 154 ------------------------------------PRGE---------------------------------------- 157 (848)
T ss_pred ------------------------------------cccc----------------------------------------
Confidence 0000
Q ss_pred cccccccccCCCccccccccccCCCCccCCcccccCccccccceeeccccCCCCCCcEEEEEEecCCCCeEeeccChhhh
Q 001052 580 HLSAMQSFHRPSIIGNQDYEITKHGTSVGSPEVHLSSRLQVTGEAEYTDDTPMPPNCLHAALVLSRRPHARILSIDDSGA 659 (1172)
Q Consensus 580 ~~s~~~~~~r~~~~~~q~~~~~~~~~~vG~~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~sID~s~A 659 (1172)
.. ..||++++|+|+.+||||+++|++|+.+ |||||++++|||++||+|++||+|+|
T Consensus 158 ----------------------~~-~~iG~~~~R~d~~~kvtG~~~Y~~Di~~-pgmL~a~~vrSp~ahA~I~~ID~s~A 213 (848)
T TIGR03311 158 ----------------------PK-GKLGENFPRVDAVPKVLGEGVYVDDMQI-EGMLYGSALRSKYPRALVKSIDITVA 213 (848)
T ss_pred ----------------------cc-CCCCCccCCcChhhhCcccccccccCCC-CCCEEEEEEeCCCCCEEEEeeEHHHH
Confidence 00 1389999999999999999999999998 79999999999999999999999999
Q ss_pred ccCCCEEEEEecCCCCCCCCCCCCCCCccc-cc-cCeEEecCCeEEEEEECCHHHHHHhcccCeeEEecCCccCCHHHHh
Q 001052 660 RSSPGFVGIFFAEDVQGDNRIGPVVADEEL-FA-SEVVTCVGQVIGVVVAETHEEAKLASRKVQVEYEELPAILSIQEAI 737 (1172)
Q Consensus 660 ~~~pGVv~Vvt~~Dipg~n~~~~~~~d~~~-la-~~~V~y~GqpVa~VvAet~~~A~~Aa~~V~V~ye~lp~v~~~~~A~ 737 (1172)
++||||++|+|++|+|+.+.++....++|. |+ +++|||+|||||+|+|+|+++|++|+++|+|+||++|+++|+++|+
T Consensus 214 ~a~PGV~aVvt~~Dip~~~~~g~~~~~~~~~~a~~~~Vry~Ge~VA~VvA~t~~~A~~A~~~V~Veye~lp~v~d~~~A~ 293 (848)
T TIGR03311 214 LKHPGVVAVLTAKDIPGNRKIGHIFKDWPALIAVGEITRYVGDAVALVAAKSKEALREALNLIKVDYEELPPLTSPEEAL 293 (848)
T ss_pred HhCCCcEEEEeHHHCCCccCCCCCCCCccccccCCCEEEEcCCeEEEEEECCHHHHHHHhCCCcEEEecCCCcCCHHHHh
Confidence 999999999999999975556655556653 44 5899999999999999999999999999999999999999999999
Q ss_pred hcCC--CCC--C--CccccccCCcccccccCCCcEEEEEEEEECcccccCCCCCeEEEEEecCCCeEEEEeCCCChHHHH
Q 001052 738 DAKS--FHP--N--TERCFRKGDVDICFQSGQCDKIIEGEVRVGGQEHFYLEPHSSVVWTMDHGNEVHMISSTQAPQKHQ 811 (1172)
Q Consensus 738 ~~~a--~~~--~--~~~~~~~Gd~e~af~~~~a~~vve~~y~~~~~~H~~mEp~~a~A~~~~~~g~l~V~~stQ~p~~~r 811 (1172)
++++ +|+ | ....+.+||++++| ++|+++||++|++++|+|+||||++|+|+|+ +|+|+||+|||+|+.+|
T Consensus 294 ~~~a~~i~~~~Nv~~~~~~~~Gdv~~af--~~A~~vve~~y~~~~~~h~~mEp~~~vA~~~--~~~l~v~~stQ~p~~~r 369 (848)
T TIGR03311 294 AEGAPAIHPKGNILSEEHVVRGDAEEAL--ENSAYVVTNHYSTPFTEHAFLEPESALAVPE--GDGVIIYTSTQGVYDEQ 369 (848)
T ss_pred cCCCCeECCCCCCcceeeecCCCHHHHh--hcCCeEEEEEEEECCEeeeecCCceEEEEEe--CCeEEEEECCcCHHHHH
Confidence 8876 342 1 12346789999999 9999999999999999999999999999997 45699999999999999
Q ss_pred HHHHHHhCCCCccEEEEeCccCCCCCCCCCcchHHHHHHHHHHHhCCCCEEEEeChhhhhhhcCCCCceEEEEEEeeCCC
Q 001052 812 KYVSHVLGLPMSKVVCKTKRIGGGFGGKETRSAFIAAAAAVPSFLLNRPVNLTLDRDIDMMISGQRHSFLGKYKVGFTNE 891 (1172)
Q Consensus 812 ~~vA~~Lglp~~kV~V~~~~vGGgFG~K~~~~~~~~~~aAlaA~k~gRPVkl~~tR~E~~~~~~~R~~~~~~~k~g~d~d 891 (1172)
..+|++||||++||||+.+++|||||+|.... .+..||++|+++||||||+|||+|+|+.+++||++.+++|+|+|+|
T Consensus 370 ~~vA~~Lglp~~~VrV~~~~vGGgFG~K~~~~--~~~~aA~~A~~~gRPVkl~~sR~E~~~~~~~R~~~~~~~k~g~d~d 447 (848)
T TIGR03311 370 RELASLLGLPKEKIRVINKFVGGGFGGKEDMS--VQHHAALLAWATKRPVKVTLTRKESILVHPKRHAMEMTFTTGCDEA 447 (848)
T ss_pred HHHHHHhCCChHHEEEEeCCCCCcCCcccccc--HHHHHHHHHHHhCCCEEEEechHHhhhccCCCCceEEEEEEEECCC
Confidence 99999999999999999999999999998753 4568999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEeEEecCCCCCCchHHHHHHHhhccCCCCCCCeEEEEEEEEecCCCCCCccCCCChhhhHHHHHHHHHHHHHH
Q 001052 892 GKVLALDLEIYNNAGNSLDLSLAVLERAMFHSDNVYEIPNVRIMGNVCFTNFPSNTAFRGFGGPQGMLITENWIQRVAVE 971 (1172)
Q Consensus 892 G~i~a~~~~~~~d~Ga~~~~s~~v~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~RG~G~~q~~fa~Es~mDelA~~ 971 (1172)
|+|+|++++++.|+|+|.+++..++.++..++.++|+|||++++++.|+||++|.++|||||.||++|++|++||++|++
T Consensus 448 G~i~a~~~~~~~d~Gay~~~~~~v~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~p~ga~RG~G~pq~~fa~E~~mD~lA~~ 527 (848)
T TIGR03311 448 GNLTAMKADIIADTGAYASLGGPVLQRACTHAAGPYKYPNVDIRGTAVYTNNPPAGAFRGFGVTQSNFAMECNLNLLAEK 527 (848)
T ss_pred CcEEEEEEEEEEccccCCCccHHHHHHHHHhcCCCccCceEEEEEEEEECCCCCCCCccCCChhHHHHHHHHHHHHHHHH
Confidence 99999999999999999988777778778889999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHhcCCCCCccccccccc-CCCHHHHHHHHHhhcChHhhHHHHhhcccCCCcceeeeEEeeeecccccccc
Q 001052 972 VRKSPEEIREINFQGEGSILHYGQQLQ-HCTLFPLWNELKLSCDFLNARKEVDNFNLNNRWKKRGIAMVPTKFGISFTLK 1050 (1172)
Q Consensus 972 lg~DP~e~R~~Nl~~~g~~~~~g~~~~-~~~l~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~grGia~~~~~~g~~~~~~ 1050 (1172)
|||||+|||+||++++|+.+++|+.++ +..+++||+++++. |+++ +++|+++.....|.++.
T Consensus 528 lg~DP~E~R~rN~~~~gd~~~~g~~~~~~~~~~~~l~~~~~~--~~~~-------------~~~G~~~~~~~~g~~~~-- 590 (848)
T TIGR03311 528 VGLSPWEIRFKNAVEPGDTLPNGQVVSEGTAIKETLLAVKEV--YEKS-------------PCAGIACAFKNSGVGVG-- 590 (848)
T ss_pred hCcCHHHHHHHhCCCCCCcCCCCceeCCCchHHHHHHHHHHH--hhhc-------------cCCeEEEEEEEeccccC--
Confidence 999999999999999999999999997 55599999999884 5421 35677776555554431
Q ss_pred cccccceEEEEeeCCeEEEEeCCccCCCChHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCCccCcccchhHHhHHHHHH
Q 001052 1051 LMNQAGALVHVYTDGTVLVTHGGVEMGQGLHTKVAQVAASAFNIPLSSVFVSETSTDKVPNASPTAASASSDIYGAAVLD 1130 (1172)
Q Consensus 1051 ~~~~~~a~V~v~~DGsV~V~~g~~e~GQG~~T~~~QIaAe~Lgip~e~V~v~~~dT~~~p~~~~t~~Sr~t~~~g~Av~~ 1130 (1172)
..+.+.+.+.++ ||+|+|.+|++|||||++|+++||+|++||||+|+|+|..+||+.+|++++|+|||+|.+.|+||++
T Consensus 591 ~~~~~~~~~~~~-DGsv~v~~g~~e~GQG~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~gt~aSR~t~~~G~Av~~ 669 (848)
T TIGR03311 591 IPDTGRCNLAVE-DGKVHIRTSAACIGQGLGTVLTQIVCETTGLPPEVIVCELPDTALTPDSGTTTASRQSLFTGEATRR 669 (848)
T ss_pred CCCcceEEEEEc-CCEEEEEECCCCcCcCHHHHHHHHHHHHHCCCHHHEEEEcCCCCCCCCCCCCchhhHHHHHHHHHHH
Confidence 123456777776 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 001052 1131 ACEQIKARMEP 1141 (1172)
Q Consensus 1131 A~~~Lr~rL~~ 1141 (1172)
||++||+||++
T Consensus 670 Aa~~l~~~l~~ 680 (848)
T TIGR03311 670 AAAKLKEALRG 680 (848)
T ss_pred HHHHHHHHHHh
Confidence 99999999974
No 8
>COG4631 XdhB Xanthine dehydrogenase, molybdopterin-binding subunit B [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.1e-116 Score=982.45 Aligned_cols=551 Identities=45% Similarity=0.677 Sum_probs=534.5
Q ss_pred CccCCcccccCccccccceeeccccCCCCCCcEEEEEEecCCCCeEeeccChhhhccCCCEEEEEecCCCCCCCCCCCCC
Q 001052 605 TSVGSPEVHLSSRLQVTGEAEYTDDTPMPPNCLHAALVLSRRPHARILSIDDSGARSSPGFVGIFFAEDVQGDNRIGPVV 684 (1172)
Q Consensus 605 ~~vG~~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~sID~s~A~~~pGVv~Vvt~~Dipg~n~~~~~~ 684 (1172)
..||.+.++-++...|+|.|.|.||++.|+|.||+++-.|+++||+|+++|.+++++.|||+.|+|++|+||.|.+++..
T Consensus 17 ~~v~~~~~HeSAhkHV~GtA~YiDD~pepag~LH~~~gls~~aHAri~~mDl~~v~a~PGVv~vlta~DvPGenDisp~~ 96 (781)
T COG4631 17 GGVGTSLRHESAHKHVTGTAVYIDDIPEPAGTLHGALGLSERAHARITRMDLSAVRAAPGVVDVLTAADVPGENDISPVK 96 (781)
T ss_pred CcccccccccchhhcccceeEEecCCCCcccchhhhccccccchheeeecchHHhhcCCCeEEEEEecCCCCCCCCCccc
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCeEEecCCeEEEEEECCHHHHHHhcccCeeEEecCCccCCHHHHhhcCCCCCCCccccccCCcccccccCCC
Q 001052 685 ADEELFASEVVTCVGQVIGVVVAETHEEAKLASRKVQVEYEELPAILSIQEAIDAKSFHPNTERCFRKGDVDICFQSGQC 764 (1172)
Q Consensus 685 ~d~~~la~~~V~y~GqpVa~VvAet~~~A~~Aa~~V~V~ye~lp~v~~~~~A~~~~a~~~~~~~~~~~Gd~e~af~~~~a 764 (1172)
+|+|+|++++|.|+||||.+|+|+|+++|++|+.+.+|+||+||+++|+.+|++.+.+.. ....+++||.+.+| +.|
T Consensus 97 hddpl~a~gkVef~GQ~vfaV~A~s~e~ARraA~~a~ieYe~lp~~~di~~a~a~~~~v~-~p~~l~rGD~~a~~--~~A 173 (781)
T COG4631 97 HDDPLLADGKVEFHGQPVFAVIAESREAARRAARLAKIEYEDLPPVTDIDEAIAAGRLVT-PPLTLKRGDAAAAL--AAA 173 (781)
T ss_pred CCCccccCceEEEccceEEEEeehhHHHHHHHHHhhhcccccCCccCCHHHHhhcccccC-Cchhhcccchhhhh--hhC
Confidence 999999999999999999999999999999999999999999999999999998886544 45678999999999 999
Q ss_pred cEEEEEEEEECcccccCCCCCeEEEEEecCCCeEEEEeCCCChHHHHHHHHHHhCCCCccEEEEeCccCCCCCCCCCcch
Q 001052 765 DKIIEGEVRVGGQEHFYLEPHSSVVWTMDHGNEVHMISSTQAPQKHQKYVSHVLGLPMSKVVCKTKRIGGGFGGKETRSA 844 (1172)
Q Consensus 765 ~~vve~~y~~~~~~H~~mEp~~a~A~~~~~~g~l~V~~stQ~p~~~r~~vA~~Lglp~~kV~V~~~~vGGgFG~K~~~~~ 844 (1172)
.+.++++++++.|+|||||.+.++|.|+ |||.++||+|||.|..+|..+|++||+|.|.|.|.+.|||||||||++...
T Consensus 174 p~r~~G~~~iGGQehFYLEgqia~a~p~-Ed~~v~v~~STQhPtE~Q~~vahvLGvpsn~VtV~~rRMGGGFGGKEtQ~~ 252 (781)
T COG4631 174 PHRLQGEMRIGGQEHFYLEGQIALAVPG-EDGDVTVWSSTQHPTEVQHLVAHVLGVPSNAVTVEVRRMGGGFGGKETQAN 252 (781)
T ss_pred chhheeeEEEcCeeeEEEeeeeeEeccC-CCCCEEEEecCCCcHHHHHHHHHHhCCCcceEEEEEEeecCCcCcccccch
Confidence 9999999999999999999999999998 788899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEeChhhhhhhcCCCCceEEEEEEeeCCCCcEEEEEEeEEecCCCCCCchHHHHHHHhhccC
Q 001052 845 FIAAAAAVPSFLLNRPVNLTLDRDIDMMISGQRHSFLGKYKVGFTNEGKVLALDLEIYNNAGNSLDLSLAVLERAMFHSD 924 (1172)
Q Consensus 845 ~~~~~aAlaA~k~gRPVkl~~tR~E~~~~~~~R~~~~~~~k~g~d~dG~i~a~~~~~~~d~Ga~~~~s~~v~~~~~~~~~ 924 (1172)
.+++.||++|+|++||||+..+|.|||+++||||++...|++|||+||+|++++..+..++|++.|+|..++++++.|++
T Consensus 253 ~fAa~aA~aA~k~~r~vk~RpdRdeDm~~TGKRHdF~v~y~vGfDdeGri~~v~~~~aarcGfS~DLSgpV~dRAlfH~D 332 (781)
T COG4631 253 QFAALAALAAKKTGRPVKIRPDRDEDMTATGKRHDFHVDYEVGFDDEGRILGVDATLAARCGFSADLSGPVTDRALFHAD 332 (781)
T ss_pred HHHHHHHHHHHHhCCceeecCCcchhhhhccCcCceEEEeeeccCCCCcEEEeeeehhhccCcccccCccchhhheeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEEEEEecCCCCCCccCCCChhhhHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCC--cccccccccCCCH
Q 001052 925 NVYEIPNVRIMGNVCFTNFPSNTAFRGFGGPQGMLITENWIQRVAVEVRKSPEEIREINFQGEGS--ILHYGQQLQHCTL 1002 (1172)
Q Consensus 925 ~~Y~ipn~~~~~~~v~TN~~~~ga~RG~G~~q~~fa~Es~mDelA~~lg~DP~e~R~~Nl~~~g~--~~~~g~~~~~~~l 1002 (1172)
++|.+|++++.++.++||+.++++|||||.||+++++|.+||++|..||+||+|+|++|++.++. .||++|..++..+
T Consensus 333 NaYf~p~v~~~s~~~kTntvSnTAfRGFGGPQGm~~~Eriid~vA~alGkdpleiRk~NfYg~~~~n~TpYhQ~Vednii 412 (781)
T COG4631 333 NAYFYPHVHILSRPLKTNTVSNTAFRGFGGPQGMLGIERIIDEVAYALGKDPLEIRKLNFYGKDGRNVTPYHQTVEDNII 412 (781)
T ss_pred cceeccceeeecceeeccccccccccccCCcchhhHHHHHHHHHHHHhCCCHHHHHhhhccCCCCCccCccccchHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999998766 6899999999999
Q ss_pred HHHHHHHHhhcChHhhHHHHhhcccCCCcceeeeEEeeeecccccccccccccceEEEEeeCCeEEEEeCCccCCCChHH
Q 001052 1003 FPLWNELKLSCDFLNARKEVDNFNLNNRWKKRGIAMVPTKFGISFTLKLMNQAGALVHVYTDGTVLVTHGGVEMGQGLHT 1082 (1172)
Q Consensus 1003 ~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~grGia~~~~~~g~~~~~~~~~~~~a~V~v~~DGsV~V~~g~~e~GQG~~T 1082 (1172)
.++|+++..+++|..|++++.+||...+..||||++.|.+||+||.....+|++|.|+||.||||.+.||++|||||++|
T Consensus 413 ~ri~~ELeaSsdyaaRr~~i~aFNa~spv~krGlAlTPVKFGISFt~t~~NQAGALVHvY~DGSi~lNHGGTEMGQGL~t 492 (781)
T COG4631 413 ARIVDELEASSDYAARREAIRAFNAASPVIKRGLALTPVKFGISFTATHYNQAGALVHVYTDGSIHLNHGGTEMGQGLYT 492 (781)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhhccChhhhccccccceeeeEEEeeeeeccCceEEEEeccCeEEEcCCCcccccchhH
Confidence 99999999999999999999999999999999999999999999988889999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCcEEEEeCCCCCCCCCccCcccchhHHhHHHHHHHHHHHHHHHHHHHHhCCC--------------
Q 001052 1083 KVAQVAASAFNIPLSSVFVSETSTDKVPNASPTAASASSDIYGAAVLDACEQIKARMEPIASKHNF-------------- 1148 (1172)
Q Consensus 1083 ~~~QIaAe~Lgip~e~V~v~~~dT~~~p~~~~t~~Sr~t~~~g~Av~~A~~~Lr~rL~~~aa~~~~-------------- 1148 (1172)
+++|++|++|+|+.++|+|..++|+++||.++|.+|.++.++|+|+++||+++|+||..+|++.++
T Consensus 493 KvaQVvA~~fqvd~~rVkitaT~T~KVpNTSaTAASSGsDLNGmAa~dAa~qIk~RLv~fAA~~~~V~~~~v~F~~n~vr 572 (781)
T COG4631 493 KVAQVVAEEFQVDIDRVKITATTTDKVPNTSATAASSGSDLNGMAAQDAARQIKERLVAFAAEHWGVPEEDVAFLPNRVR 572 (781)
T ss_pred HHHHHHHHHhCcccceEEEeccccCCCCCCccccccccCCcccHHHHHHHHHHHHHHHHHHHHhcCCCHHHeEecCCeeE
Confidence 999999999999999999999999999999999999999999999999999999999999998743
Q ss_pred -----CCHHHHHHHHh
Q 001052 1149 -----NSFAEKIIMFC 1159 (1172)
Q Consensus 1149 -----~~w~~~i~~~~ 1159 (1172)
.+++++|+.+|
T Consensus 573 ig~~~~~F~~lv~~AY 588 (781)
T COG4631 573 IGGQELAFADLVKQAY 588 (781)
T ss_pred EcceecCHHHHHHHHh
Confidence 45789999987
No 9
>TIGR02965 xanthine_xdhB xanthine dehydrogenase, molybdopterin binding subunit. Members of the protein family are the molybdopterin-containing large subunit (or, in, eukaryotes, the molybdopterin-binding domain) of xanthine dehydrogenase, and enzyme that reduces the purine pool by catabolizing xanthine to urate. This model is based primarily on bacterial sequences; it does not manage to include all eukaryotic xanthine dehydrogenases and thereby discriminate them from the closely related enzyme aldehyde dehydrogenase.
Probab=100.00 E-value=1.6e-114 Score=1087.42 Aligned_cols=561 Identities=44% Similarity=0.682 Sum_probs=515.0
Q ss_pred cCCcccccCccccccceeeccccCCCCCCcEEEEEEecCCCCeEeeccChhhhccCCCEEEEEecCCCCCCCCCCCCCCC
Q 001052 607 VGSPEVHLSSRLQVTGEAEYTDDTPMPPNCLHAALVLSRRPHARILSIDDSGARSSPGFVGIFFAEDVQGDNRIGPVVAD 686 (1172)
Q Consensus 607 vG~~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~sID~s~A~~~pGVv~Vvt~~Dipg~n~~~~~~~d 686 (1172)
|||+++|+|+..|+||+++|++|+..+|||||+++||||++||+|++||+|+|+++|||++|+|++|+|+.|.++....+
T Consensus 1 ~G~~~~R~d~~~kvtG~a~Y~~Di~~~pgmL~a~~vrSp~aha~I~~iD~s~A~~~pGV~~V~t~~D~p~~~~~g~~~~~ 80 (758)
T TIGR02965 1 VGTSLKHESAHKHVAGTAVYIDDIPEPAGTLHAALGLSTRAHARITSMDLSAVRAAPGVVDVLTAADIPGENDISPIIHD 80 (758)
T ss_pred CCCCccCcchHhhCceeeEcccCCCCCCCCEEEEEEecCCCceEEeecchHHHhcCCCcEEEEEHHHCCCCCCCCCCCCC
Confidence 69999999999999999999999963379999999999999999999999999999999999999999987766766679
Q ss_pred ccccccCeEEecCCeEEEEEECCHHHHHHhcccCeeEEecCCccCCHHHHhhcCCCCCCCccccccCCcccccccCCCcE
Q 001052 687 EELFASEVVTCVGQVIGVVVAETHEEAKLASRKVQVEYEELPAILSIQEAIDAKSFHPNTERCFRKGDVDICFQSGQCDK 766 (1172)
Q Consensus 687 ~~~la~~~V~y~GqpVa~VvAet~~~A~~Aa~~V~V~ye~lp~v~~~~~A~~~~a~~~~~~~~~~~Gd~e~af~~~~a~~ 766 (1172)
+|+|++++|||+|||||+|||+|+++|++|+++|+|+||+||+++|+++|++++++..+....+.+||++++| ++|++
T Consensus 81 ~~~la~~~Vry~Ge~va~VvA~~~~~A~~A~~~i~V~ye~lp~v~d~~~Al~~~a~~~~~~~~~~~Gd~~~af--~~a~~ 158 (758)
T TIGR02965 81 DPLLADGKVEFVGQPIFAVIATSRDAARRAARLAKIEYEELPAVLDIEEALAAGSRFVTPPLTLERGDAEAAL--AAAPH 158 (758)
T ss_pred ceeccCCEEEEcCCeEEEEEECCHHHHHHHhhccEEEEEcCCccCCHHHHhcCCCCcccCcccccCCCHHHHH--hhCCE
Confidence 9999999999999999999999999999999999999999999999999999886422123456889999999 99999
Q ss_pred EEEEEEEECcccccCCCCCeEEEEEecCCCeEEEEeCCCChHHHHHHHHHHhCCCCccEEEEeCccCCCCCCCCCcchHH
Q 001052 767 IIEGEVRVGGQEHFYLEPHSSVVWTMDHGNEVHMISSTQAPQKHQKYVSHVLGLPMSKVVCKTKRIGGGFGGKETRSAFI 846 (1172)
Q Consensus 767 vve~~y~~~~~~H~~mEp~~a~A~~~~~~g~l~V~~stQ~p~~~r~~vA~~Lglp~~kV~V~~~~vGGgFG~K~~~~~~~ 846 (1172)
+||++|++++|+|+||||++|+|+|+ ++|+|+||+|||+|+.+|..+|++||||++||||+.+++|||||+|.+...++
T Consensus 159 vve~~y~~~~~~h~~mEp~~~vA~~~-~~g~l~v~~stQ~p~~~r~~lA~~Lglp~~~VrV~~~~vGGgFG~K~~~~~~~ 237 (758)
T TIGR02965 159 RLSGEMRIGGQEHFYLEGQIALAVPG-EDGGMHVWSSTQHPSEVQHLVAHVLGVPSHAVTVEVRRMGGGFGGKETQANLF 237 (758)
T ss_pred EEEEEEEECCEeEEecCCceEEEEEc-CCCCEEEEECCCChHHHHHHHHHHhCCChHHEEEEeCCCccCccccccccchH
Confidence 99999999999999999999999998 46789999999999999999999999999999999999999999998765455
Q ss_pred HHHHHHHHHhCCCCEEEEeChhhhhhhcCCCCceEEEEEEeeCCCCcEEEEEEeEEecCCCCCCchHHHHHHHhhccCCC
Q 001052 847 AAAAAVPSFLLNRPVNLTLDRDIDMMISGQRHSFLGKYKVGFTNEGKVLALDLEIYNNAGNSLDLSLAVLERAMFHSDNV 926 (1172)
Q Consensus 847 ~~~aAlaA~k~gRPVkl~~tR~E~~~~~~~R~~~~~~~k~g~d~dG~i~a~~~~~~~d~Ga~~~~s~~v~~~~~~~~~~~ 926 (1172)
++.||++|+++||||||+|||+|+|+.+++||++.+++|+|+|+||+|+|++++++.|+|+|.+.+..++.++..++.++
T Consensus 238 ~~~aa~~A~~~grPVk~~~sR~E~~~~~~~r~~~~~~~~~g~~~dG~i~a~~~~~~~d~Gay~~~~~~~~~~~~~~~~~~ 317 (758)
T TIGR02965 238 ACLAAVAARKTGRPVKLRPDRDDDMMITGKRHDFLVDYDVGFDDEGRILGVDIDMAARCGFSADLSGPVTDRALFHADNA 317 (758)
T ss_pred HHHHHHHHHHHCCCEEEEechHHhhhhccCccceEEEEEEEECCCCCEEEEEEEEeecCcccCCcchHHHHHHHHhcCCc
Confidence 78999999999999999999999999999999999999999999999999999999999999876666777777788999
Q ss_pred CCCCeEEEEEEEEecCCCCCCccCCCChhhhHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCcc--cccccccCCCHHH
Q 001052 927 YEIPNVRIMGNVCFTNFPSNTAFRGFGGPQGMLITENWIQRVAVEVRKSPEEIREINFQGEGSIL--HYGQQLQHCTLFP 1004 (1172)
Q Consensus 927 Y~ipn~~~~~~~v~TN~~~~ga~RG~G~~q~~fa~Es~mDelA~~lg~DP~e~R~~Nl~~~g~~~--~~g~~~~~~~l~~ 1004 (1172)
|+|||++++++.|+||++|+|+|||||.+|+.|++|++||++|++|||||+|||+||++++|+.+ ++|+.++++.+++
T Consensus 318 Y~ipn~~~~~~~v~TN~~~~ga~Rg~G~~q~~fa~E~~mD~~A~~lg~DP~e~R~~Nl~~~g~~~~~~~g~~~~s~~~~~ 397 (758)
T TIGR02965 318 YFLPDVTITSHPLKTNTQSNTAFRGFGGPQGMVAIERIMDEVARALGKDPLEVRKRNFYGKDERNVTPYHQTVEDNIIHE 397 (758)
T ss_pred ccCCceEEEEEEEEcCCCCCccccCCChHHHHHHHHHHHHHHHHHhCcCHHHHHHHcCCCCCCCCcCCCceeccCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988766 6799999999999
Q ss_pred HHHHHHhhcChHhhHHHHhhcccCCCcceeeeEEeeeecccccccccccccceEEEEeeCCeEEEEeCCccCCCChHHHH
Q 001052 1005 LWNELKLSCDFLNARKEVDNFNLNNRWKKRGIAMVPTKFGISFTLKLMNQAGALVHVYTDGTVLVTHGGVEMGQGLHTKV 1084 (1172)
Q Consensus 1005 ~l~~~~~~~~~~~r~~~~~~~~~~~~~~grGia~~~~~~g~~~~~~~~~~~~a~V~v~~DGsV~V~~g~~e~GQG~~T~~ 1084 (1172)
||+++++.++|++|++..+++|..++|++||+++++..+|.++.....+++.+.|+|++||+|+|.+|.+|||||++|++
T Consensus 398 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~rGiG~a~~~~g~~~~~~~~~~~~a~v~i~~dG~v~v~~g~~e~GQG~~T~l 477 (758)
T TIGR02965 398 IIEELEESSDYAARRAAIRAFNAASPVLKKGIALTPVKFGISFTVTHLNQAGALVHVYTDGSIHLNHGGTEMGQGLNTKV 477 (758)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCceeEEEEeeeeccccccccccCccceEEEEeCCCcEEEEECCCCCCCCHHHHH
Confidence 99999999999998877777777788888999999888887654322346789999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCcEEEEeCCCCCCCCCccCcccchhHHhHHHHHHHHHHHHHHHHHHHHhCC-----------------
Q 001052 1085 AQVAASAFNIPLSSVFVSETSTDKVPNASPTAASASSDIYGAAVLDACEQIKARMEPIASKHN----------------- 1147 (1172)
Q Consensus 1085 ~QIaAe~Lgip~e~V~v~~~dT~~~p~~~~t~~Sr~t~~~g~Av~~A~~~Lr~rL~~~aa~~~----------------- 1147 (1172)
+||+||+||||+|+|+|..+||+.+|++++|+|||+|.+.|.||++||++||++|+++|+++.
T Consensus 478 aQIaAe~LGi~~d~V~v~~~DT~~~p~~~gT~gSr~t~~~g~Av~~Aa~~lr~~l~~~Aa~~l~~~~~~l~~~~g~v~~~ 557 (758)
T TIGR02965 478 AQVVAEEFQVDIDRVKITATDTDKVPNTSATAASSGSDLNGMAAQDAARQIKERLVAFAAEKWQVPAEDVRFAPNHVRVG 557 (758)
T ss_pred HHHHHHHhCCCHHHEEEEecCccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHEEEECCEEEeC
Confidence 999999999999999999999999999999999999999999999999999999999988752
Q ss_pred --CCCHHHHHHHHhc-cccceeEEee
Q 001052 1148 --FNSFAEKIIMFCN-ILSSQVHVMF 1170 (1172)
Q Consensus 1148 --~~~w~~~i~~~~~-~~~~~~~~~~ 1170 (1172)
..+|.+++..++. ...+..++.|
T Consensus 558 ~~~~~~~~l~~~a~~~~~~l~~~~~~ 583 (758)
T TIGR02965 558 EQRVPFAELVQQAYFARVQLSSTGFY 583 (758)
T ss_pred CCccCHHHHHHHHhhcCCCcEEEEEE
Confidence 2679999887752 2334444443
No 10
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=100.00 E-value=9.8e-114 Score=928.97 Aligned_cols=475 Identities=35% Similarity=0.594 Sum_probs=426.1
Q ss_pred ceEEEEEECCEEEEecCCCCCCcHHHHHhh-CCCCCcccCccCCCCCceEEEEeccccCCCcccceeecccccchhccCC
Q 001052 18 TKEAILYVNGLRKVLPDGLAHLTLLEYLRD-IGLTGTKLGCGEGGCGACTVMVSRYDKKSKKCVHCAVNACLAPLYSLEG 96 (1172)
Q Consensus 18 ~~~i~~~~Ng~~~~~~~~~p~~~L~~~LR~-~~l~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g 96 (1172)
++.|+|.+||+.+.+++++|..|||||||. .+|||||+||.||+||||||||..... .+.++|++||+||..+.++||
T Consensus 6 ~~~irf~lN~~~~~l~~v~P~~TlLd~LR~d~~ltGtKEGCAEGDCGACTVlVgrl~~-g~~l~yeSVNACirfl~sL~G 84 (493)
T COG4630 6 RNTIRFLLNGETRVLSDVPPTTTLLDYLRLDRRLTGTKEGCAEGDCGACTVLVGRLVD-GGSLRYESVNACIRFLGSLDG 84 (493)
T ss_pred cceeEEEecCceEEeecCCcchHHHHHHHHhcccccccccccCCCcCceEEEEEeecC-CCceeeeehhHHHHHHhhcCC
Confidence 689999999999999999999999999996 599999999999999999999988652 233999999999999999999
Q ss_pred ceEEEeecccCCCCCcCHHHHHHHHhCCCCCCCCchHHHHHHHHHHHhCCCCCCHHHHHHHhhcCccccCCChhHHHHHH
Q 001052 97 MHVITVEGVGNRKHGLHPIQESLVRSHGSQCGFCTPGFIMSMYSLLRSSQTPPTEEQIEESLAGNLCRCTGYRPIVDAFR 176 (1172)
Q Consensus 97 ~~i~T~Egl~~~~~~~~~iq~a~~~~~~~qCG~CtpG~vm~~~~ll~~~~~~~~~~~i~~~l~gnlCRCtgy~~i~~a~~ 176 (1172)
+||+|||+|+..++.||||||+|+++|||||||||||||||+|+|..+++.| +...|+++|+|||||||||+||++|.+
T Consensus 85 ~hvvTvE~L~~~~g~LHpVQqamvd~hGSQCGfCTPGFVmSLyal~~~~~~P-~~a~i~kALqGNLCRCTGY~pI~~AA~ 163 (493)
T COG4630 85 THVVTVEHLRGQDGTLHPVQQAMVDFHGSQCGFCTPGFVMSLYALWMNSPTP-SRAAIEKALQGNLCRCTGYRPIIRAAE 163 (493)
T ss_pred ceEEEehhhcCCCCCcCHHHHHHHhccCCccCCcCchHHHHHHHHHhcCCCC-chhHHHHHhhCCcccccCchHHHHHHH
Confidence 9999999999555559999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHhccccccccCCcccccCCccccCCCCCCCCCCCCCCCCCcccccccccCCccccccccccCCCCCCCCCcCCChhhh
Q 001052 177 VFAKTNDALYTNMSSMSLKEGEFVCPSTGKPCSCGMKNVSNADTCEKSVACGKTYEPVSYSEIDGSTYTEKELIFPPELL 256 (1172)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~p~~l~ 256 (1172)
.++..... + + |.|..-..-..-+.|.
T Consensus 164 ~~~a~~~~--------a-----------~-----------------------------------fDPl~~~R~~~~~~L~ 189 (493)
T COG4630 164 AIAALGPA--------A-----------G-----------------------------------FDPLAARRTAITARLR 189 (493)
T ss_pred HHhccCCc--------c-----------c-----------------------------------CChhhhhHHHHHHHHh
Confidence 87643210 0 0 0000000000001121
Q ss_pred c-cCCCCccccCCCCceEEecCCHHHHHHHHhhCCCcEEEeccCcceeeeeeccccCceEEecCCcccccceeecCCcEE
Q 001052 257 L-RKSNPLNLSGFGGLKWYRPLKLQHLLELKSKYPDSKLLVGNTEVGIEMRLKRMQYQVLISVTHVPELNVLNVKDDGLE 335 (1172)
Q Consensus 257 ~-~~~~~~~~~~~~~~~~~~P~sl~eal~ll~~~~~a~lvaGgTdl~v~~k~~~~~~~~lIdl~~v~EL~~I~~~~~~l~ 335 (1172)
. .....+.+++ +...++.|.+|+++..++++||+++||||+||+++|..+....-..+|.+++|+||+.|++..++|+
T Consensus 190 A~~~~e~v~~~~-~~~r~~~P~~l~D~a~l~aa~P~AtivAGsTDvgLwVtk~mr~l~~vi~v~~l~eL~~i~~~~~~l~ 268 (493)
T COG4630 190 ALRDTETVEVGS-GDDRFIVPATLADFADLLAAHPGATIVAGSTDVGLWVTKQMRDLNPVIFVGHLAELRRIEVSTGGLE 268 (493)
T ss_pred hccCCcEEEecC-CCceeEeeccHHHHHHHHhhCCCCEEEecCcchhhHHHHHHhhcCCeEEecchhhhheeeecCCcEE
Confidence 1 1123455555 5678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccccHHHHHHHHHHhhhcCCCCccchHHHHHHHHHHhccccccccccccccccccCCCCChhHHHHhcCCEEEEEeCC
Q 001052 336 IGAAVRLTELLKMFRKVVTERPAHETSSCKAFIEQIKWFAGTQIKNVASVGGNICTASPISDLNPLWMASGAKFHIVDCK 415 (1172)
Q Consensus 336 IGA~vTl~~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp~sD~~~~Llal~A~v~l~s~~ 415 (1172)
|||++||+|....|.. .+|.|.+.+.+|||.||||+|||||||+|+||++|.+|+|+||||+|+|.+.+
T Consensus 269 iGAgvt~t~a~~~la~-----------~~P~l~~L~~r~gg~qvRN~gTlGGNIangSPIGDtPPaLIALgA~ltLr~g~ 337 (493)
T COG4630 269 IGAGVTYTQAYRALAG-----------RYPALGELWDRFGGEQVRNMGTLGGNIANGSPIGDTPPALIALGATLTLRSGD 337 (493)
T ss_pred EccCccHHHHHHHHHh-----------hCchHHHHHHHhcchhhhccccccccccCCCcCCCCCchhhhcCcEEEEEecC
Confidence 9999999999987654 45678999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEehHhhhcccccccCCCCeEEEEEEccCCCCccceeeeeecccCccccceeeeEEEEEEecCCcceEEEEEEEEE
Q 001052 416 GNIRTTMAEEFFLGYRKVDLTSGEILLSIFLPWTRPFEFVKEFKQAHRRDDDIALVNAGMRVYLEEKDEEWVVSDALLVY 495 (1172)
Q Consensus 416 g~~R~vpl~dF~~g~~~t~L~~~Eil~~I~iP~~~~~~~~~~~K~~~R~~~dia~v~~A~~~~~~~~~~~~~i~~~ria~ 495 (1172)
+ .|++||+|||.+|+|++++|||+|.+|+||.+.+...|.+||++||++.||+.|.+||.++++++ +|.++||+|
T Consensus 338 ~-~RtlPLe~~Fi~Y~kqdr~pGEfVe~v~vP~~~~~~rfa~yKisKRrdeDISAv~~Af~l~Ldg~----~V~~arIa~ 412 (493)
T COG4630 338 G-RRTLPLEDYFIAYGKQDRQPGEFVEAVRVPLPAPSERFAAYKISKRRDEDISAVCGAFALDLDGG----RVADARIAF 412 (493)
T ss_pred C-cccccHHHHHHHhhhhccCcchhhhheecCCCCcchhhhhhhhhhhccchHHHHHhHheeeecCC----eeeeeeeec
Confidence 9 99999999999999999999999999999999888999999999999999999999999999866 799999999
Q ss_pred ccCCCccccHHHHHHHhcCCCCCHHHHHHHHHhhccccccCCCCCCCChhHHHHHHHHHHHHHHHHHhhhc
Q 001052 496 GGVAPLSLSAKKTKTFIVGKSWSQELLQNALKILQTDIILKEDAPGGMVDFRKSLTLSFFFKFFLWVSHQM 566 (1172)
Q Consensus 496 Ggv~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~e~~~~~~~~~~saeYR~~la~~L~~r~l~~~~~~~ 566 (1172)
|||+.+|+|+.++|++|.||+|++++++.|+..+..++.|-.|. |+|+|||..+++||++|||++.....
T Consensus 413 GGmAaTPkRA~~~EaAL~Gk~wteatve~A~aAl~~D~tPltD~-RAsaeYR~l~a~nlL~RfflEt~~~~ 482 (493)
T COG4630 413 GGMAATPKRASEVEAALLGKPWTEATVEAAAAALAGDFTPLTDM-RASAEYRALTAKNLLRRFFLETQGEA 482 (493)
T ss_pred CccccCccchHHHHHHHcCCCccHHHHHHHHHHHhcCCCcccch-hhhHHHHHHHHHHHHHHHhhhccCCc
Confidence 99999999999999999999999999999999999999876664 89999999999999999999887644
No 11
>TIGR03196 pucD xanthine dehydrogenase D subunit. This gene has been characterized in B. subtilis as the molybdopterin binding-subunit of xanthine dehydrogenase (pucD), acting in conjunction with pucC, the FAD-binding subunit and pucE, the FeS-binding subunit. The more common XDH complex (GenProp0640) includes the xdhB gene which is related to pucD. It appears that most of the relatives of pucD outside of this narrow clade are involved in other processes as they are found in unrelated genomic contexts, contain the more common XDH complex and/or do not appear to process purines to allantoin.
Probab=100.00 E-value=6.2e-111 Score=1053.43 Aligned_cols=534 Identities=27% Similarity=0.404 Sum_probs=482.9
Q ss_pred ccCCccc-ccCccccccceeeccccCCCCCCcEEEEEEecCCCCeEeeccChhhhccCCCEEEEEecCCCCCCCCCCCCC
Q 001052 606 SVGSPEV-HLSSRLQVTGEAEYTDDTPMPPNCLHAALVLSRRPHARILSIDDSGARSSPGFVGIFFAEDVQGDNRIGPVV 684 (1172)
Q Consensus 606 ~vG~~~~-r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~sID~s~A~~~pGVv~Vvt~~Dipg~n~~~~~~ 684 (1172)
.|||+++ |+|+..||||+++|++|+.+ |||||++++|||++||+|++||+++|+++|||++|+|++|+|+.+.+|...
T Consensus 2 ~iG~~~~~R~d~~~kvtG~a~Y~~Di~~-pgmL~a~~vrSp~aha~I~siD~s~A~a~pGV~~V~t~~D~p~~~~~g~~~ 80 (768)
T TIGR03196 2 GIGKPSRVRPDGPDKVTGEFKYMGDLRF-PGMLHAKTLRSAHAHAEIRRVCTDAAEKLEGVQAMVTAADVPGLARFGIII 80 (768)
T ss_pred cCCCcCCcCcchHhhCcccccccccCCC-CCcEEEEEEecCCCcEEEeeccHHHHHhCCCcEEEEehHHCCCCCCCCccC
Confidence 4899999 99999999999999999998 799999999999999999999999999999999999999999766666666
Q ss_pred CCccccccCeEEecCCeEEEEEECCHHHHHHhcccCeeEEecCCccCCHHHHhhcCC--CCC--C--CccccccCCcccc
Q 001052 685 ADEELFASEVVTCVGQVIGVVVAETHEEAKLASRKVQVEYEELPAILSIQEAIDAKS--FHP--N--TERCFRKGDVDIC 758 (1172)
Q Consensus 685 ~d~~~la~~~V~y~GqpVa~VvAet~~~A~~Aa~~V~V~ye~lp~v~~~~~A~~~~a--~~~--~--~~~~~~~Gd~e~a 758 (1172)
.|+|+|++++|||+|||||+|||+|+++|++|+++|+|+||+||+++|+++|+++++ +|+ | ......+||++++
T Consensus 81 ~~~~~la~~~Vr~~G~~VA~VvA~t~~~A~~A~~~v~Veye~lp~v~d~~~a~~~~a~~i~~~~ni~~~~~~~~Gd~~~a 160 (768)
T TIGR03196 81 ADQPVFAADEIRYAGDAIAAVAAEDEEIAEAALAAIEVDYEELAPMDDPDKALQPDAEPLHEAGNILHEAEFRHGDPDEG 160 (768)
T ss_pred CCcccccCCEEEEcCCeEEEEEECCHHHHHHHhccCceEEEeCCCcCCHHHHhcCCCCeECCCCcCcceeeeccCCHhHH
Confidence 799999999999999999999999999999999999999999999999999998764 332 1 1234688999999
Q ss_pred cccCCCcEEEEEEEEECcccccCCCCCeEEEEEecCCCeEEEEeCCCChHHHHHHHHHHhCCCCccEEEEeCccCCCCCC
Q 001052 759 FQSGQCDKIIEGEVRVGGQEHFYLEPHSSVVWTMDHGNEVHMISSTQAPQKHQKYVSHVLGLPMSKVVCKTKRIGGGFGG 838 (1172)
Q Consensus 759 f~~~~a~~vve~~y~~~~~~H~~mEp~~a~A~~~~~~g~l~V~~stQ~p~~~r~~vA~~Lglp~~kV~V~~~~vGGgFG~ 838 (1172)
| ++|+++||++|++++|+|+||||++|+|+|+ ++|+|+||+|||+|+.+|..||++||||++||||+++++|||||+
T Consensus 161 f--~~a~~vve~~y~~~~~~h~~mEp~~~~A~~~-~~g~l~v~~stQ~p~~~r~~lA~~Lglp~~~VrV~~~~vGGgFG~ 237 (768)
T TIGR03196 161 F--AAGDTVFEDQYELGMQDHAFLAPEAALAMPA-ADGGFDLRAATQHGHKDREQIAACFDIPEEKIRITLAGMGGAFGG 237 (768)
T ss_pred h--ccCCEEEEEEEEeCCeeeeecCCceEEEEEc-CCCCEEEEECCCchHHHHHHHHHHhCCCHHHEEEEeCCCCCccCC
Confidence 9 9999999999999999999999999999997 467899999999999999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHhCCCCEEEEeChhhhhhhcCCCCceEEEEEEeeCCCCcEEEEEEeEEecCCCCCCchHHHHHH
Q 001052 839 KETRSAFIAAAAAVPSFLLNRPVNLTLDRDIDMMISGQRHSFLGKYKVGFTNEGKVLALDLEIYNNAGNSLDLSLAVLER 918 (1172)
Q Consensus 839 K~~~~~~~~~~aAlaA~k~gRPVkl~~tR~E~~~~~~~R~~~~~~~k~g~d~dG~i~a~~~~~~~d~Ga~~~~s~~v~~~ 918 (1172)
|.... ..+.||++|+++||||||+|||+|+|+.+++||++.+++|+|+|+||+|+|++++++.|+|+|.+++..+...
T Consensus 238 K~~~~--~~~~aa~~A~~~gRPVk~~~sReE~~~~~~~r~~~~~~~k~g~~~dG~i~a~~~~~~~d~Gay~~~~~~v~~~ 315 (768)
T TIGR03196 238 KDDLN--IQIHAALLALASGLPVKIAQDRKESFLGGIHRHPAKITFKHGADADGNLLAHDAKIVADGGAYASLGPAVLAF 315 (768)
T ss_pred ccccc--HHHHHHHHHHHhCCCEEEEechHHhhhcCCCCCCeEEEEEEEECCCCcEEEEEEEEEecccccCCccHHHHHH
Confidence 98753 4577899999999999999999999999999999999999999999999999999999999998888777777
Q ss_pred HhhccCCCCCCCeEEEEEEEEecCCCCCCccCCCChhhhHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCccccccccc
Q 001052 919 AMFHSDNVYEIPNVRIMGNVCFTNFPSNTAFRGFGGPQGMLITENWIQRVAVEVRKSPEEIREINFQGEGSILHYGQQLQ 998 (1172)
Q Consensus 919 ~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~RG~G~~q~~fa~Es~mDelA~~lg~DP~e~R~~Nl~~~g~~~~~g~~~~ 998 (1172)
+...+.++|++||++++++.++||++|+|+|||||.+|+.|++|++||++|++|||||+|||++|++++|+.+++|+++.
T Consensus 316 ~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~Rg~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~Nl~~~g~~~~~g~~~~ 395 (768)
T TIGR03196 316 AVEHAAGPYRIPNAHLEGISVFTNNGPAGAFRGFGGNQITFAHEAHLDRLADALGIDPLDLRRKNARKPGDLGPLEHRIA 395 (768)
T ss_pred HHHhcCCCcccceEEEEEEEEEcCCCCCCccCCCChhHHHHHHHHHHHHHHHHhCcCHHHHHHHhCCCCCCcCCCCcccC
Confidence 77778999999999999999999999999999999999999999999999999999999999999999999888998886
Q ss_pred -CCCHHHHHHHHHhhcChH-----hhHHHHhhcc-------cCCCcceeeeEEeeeecccccccccccc--cceEEEEee
Q 001052 999 -HCTLFPLWNELKLSCDFL-----NARKEVDNFN-------LNNRWKKRGIAMVPTKFGISFTLKLMNQ--AGALVHVYT 1063 (1172)
Q Consensus 999 -~~~l~~~l~~~~~~~~~~-----~r~~~~~~~~-------~~~~~~grGia~~~~~~g~~~~~~~~~~--~~a~V~v~~ 1063 (1172)
+..+++||++++++++|+ ++......|+ .+++ ++||++++...++.++.....+. +.+.|+|++
T Consensus 396 ~~~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~rGiG~a~~~~~~~~~~~~~~~~~~~a~v~l~~ 474 (768)
T TIGR03196 396 APDGAAEVIEAIASRPLPKAPILKKANRAVTALPGGRPAAAECGR-LQRGTGAAIAMHGGGFGEGMDDAAVAGARLELAE 474 (768)
T ss_pred CcCCHHHHHHHHHhhccccchhhhhhhhhhhhhhhhhhhhhhcCC-eeEEEEEEEEEecccCCCCccccCCccEEEEEeC
Confidence 788999999999999997 3322221221 1232 35677766666554443211122 378999999
Q ss_pred CCe--EEEEeCCccCCCChHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCCccCcccchhHHhHHHHHHHHHHHHHHHHH
Q 001052 1064 DGT--VLVTHGGVEMGQGLHTKVAQVAASAFNIPLSSVFVSETSTDKVPNASPTAASASSDIYGAAVLDACEQIKARMEP 1141 (1172)
Q Consensus 1064 DGs--V~V~~g~~e~GQG~~T~~~QIaAe~Lgip~e~V~v~~~dT~~~p~~~~t~~Sr~t~~~g~Av~~A~~~Lr~rL~~ 1141 (1172)
||+ |+|.+|++|||||++|+++||+||+||||+|+|+|..+||+.+|++++|+|||+|++.|.||++||++||+||++
T Consensus 475 dGsv~v~v~~g~~d~GQG~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~gt~~Sr~t~~~G~Av~~Aa~~l~~kl~~ 554 (768)
T TIGR03196 475 DGTVKIRAHFACAECGQGFLAAAEQIAMEELGCAAEDISIAIADTAKGPKAGSSSASRGTSMSGGAIQGACAAFAAQLKA 554 (768)
T ss_pred CCCeEEEEEECCCCcCCCHHHHHHHHHHHHhCCCHHHEEEecCCCCCCCCCCCCchhhhhHhHHHHHHHHHHHHHHHHHH
Confidence 996 889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhC
Q 001052 1142 IASKH 1146 (1172)
Q Consensus 1142 ~aa~~ 1146 (1172)
+++++
T Consensus 555 ~aa~~ 559 (768)
T TIGR03196 555 RAAET 559 (768)
T ss_pred HHHHH
Confidence 97764
No 12
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=100.00 E-value=1.7e-111 Score=1001.19 Aligned_cols=463 Identities=37% Similarity=0.634 Sum_probs=420.8
Q ss_pred EEEEECCEEEEecCCCCCCcHHHHHhhC-CCCCcccCccCCCCCceEEEEeccccCCCcccceeecccccchhccCCceE
Q 001052 21 AILYVNGLRKVLPDGLAHLTLLEYLRDI-GLTGTKLGCGEGGCGACTVMVSRYDKKSKKCVHCAVNACLAPLYSLEGMHV 99 (1172)
Q Consensus 21 i~~~~Ng~~~~~~~~~p~~~L~~~LR~~-~l~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i 99 (1172)
|+|+|||+++++++++|+++|++|||++ ||||||.||++|+||||||+|.++|..+ +++|++||||++|+++++|++|
T Consensus 1 i~~~~Ng~~~~~~~~~~~~~ll~~lR~~~~l~g~k~gC~~G~CGaCtv~~~~~~~~~-~~~~~~v~sCl~~~~~~~g~~i 79 (467)
T TIGR02963 1 IRFFLNGETVTLSDVDPTRTLLDYLREDAGLTGTKEGCAEGDCGACTVVVGELVDGG-KLRYRSVNACIQFLPSLDGKAV 79 (467)
T ss_pred CEEEECCEEEEeecCCCCCCHHHHHHHhcCCCCCCcccCCCCCCceEEEEEecCCCC-cccceEEehhhhhHHhcCCCEE
Confidence 5799999999995699999999999996 9999999999999999999997776445 8999999999999999999999
Q ss_pred EEeecccCCCCCcCHHHHHHHHhCCCCCCCCchHHHHHHHHHHHhCCCCCCHHHHHHHhhcCccccCCChhHHHHHHHHH
Q 001052 100 ITVEGVGNRKHGLHPIQESLVRSHGSQCGFCTPGFIMSMYSLLRSSQTPPTEEQIEESLAGNLCRCTGYRPIVDAFRVFA 179 (1172)
Q Consensus 100 ~T~Egl~~~~~~~~~iq~a~~~~~~~qCG~CtpG~vm~~~~ll~~~~~~~~~~~i~~~l~gnlCRCtgy~~i~~a~~~~~ 179 (1172)
+|||||++..+.+||||++|+++|++|||||||||||++++||+++|.| +++||+++|+|||||||||++|++|++.++
T Consensus 80 ~TvEgl~~~~~~l~~~q~a~~~~~~~QCG~CtpG~vm~~~~ll~~~~~~-~~~~i~~~l~gnlCRCtgy~~i~~a~~~~~ 158 (467)
T TIGR02963 80 VTVEDLRQPDGRLHPVQQAMVECHGSQCGFCTPGFVMSLYALYKNSPAP-SRADIEDALQGNLCRCTGYRPILDAAEAAF 158 (467)
T ss_pred EecCCCCCCCCCCCHHHHHHHHcCCCcCCCCchHHHHHHHHHHhcCCCC-CHHHHHHHhcCCcccCCCCHHHHHHHHHHH
Confidence 9999998435689999999999999999999999999999999999999 999999999999999999999999995443
Q ss_pred hccccccccCCcccccCCccccCCCCCCCCCCCCCCCCCcccccccccCCccccccccccCCCCCCCC-CcCCChhhhcc
Q 001052 180 KTNDALYTNMSSMSLKEGEFVCPSTGKPCSCGMKNVSNADTCEKSVACGKTYEPVSYSEIDGSTYTEK-ELIFPPELLLR 258 (1172)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~~p~~l~~~ 258 (1172)
+. .| +++|++. +++| |+|...
T Consensus 159 -~~--------------------------~~------------------------------~~~~~~~~~~~~-~~l~~~ 180 (467)
T TIGR02963 159 -DY--------------------------PC------------------------------SDPLDADRAPII-ERLRAL 180 (467)
T ss_pred -hC--------------------------CC------------------------------CCcCCcchhhhh-hHHHhc
Confidence 11 01 1234444 5667 445432
Q ss_pred -CCCCccccCCCCceEEecCCHHHHHHHHhhCCCcEEEeccCcceeeeeeccccCceEEecCCcccccceeecCCcEEEc
Q 001052 259 -KSNPLNLSGFGGLKWYRPLKLQHLLELKSKYPDSKLLVGNTEVGIEMRLKRMQYQVLISVTHVPELNVLNVKDDGLEIG 337 (1172)
Q Consensus 259 -~~~~~~~~~~~~~~~~~P~sl~eal~ll~~~~~a~lvaGgTdl~v~~k~~~~~~~~lIdl~~v~EL~~I~~~~~~l~IG 337 (1172)
...++.+.+ ++.+||+|+||+||+++|+++|+++++|||||++++++++...++++|||++|+||++|+.++++|+||
T Consensus 181 ~~~~~~~~~~-~~~~~~~P~sl~Ea~~ll~~~~~a~lvAGGTdl~~~~~~~~~~~~~lIdl~~I~EL~~I~~~~~~l~IG 259 (467)
T TIGR02963 181 RAGETVELNF-GGERFIAPTTLDDLAALKAAHPDARIVAGSTDVGLWVTKQMRDLPDVIYVGQVAELKRIEETDDGIEIG 259 (467)
T ss_pred CCCcceeecC-CCceEECCCCHHHHHHHHhhCCCCEEEecCcchHHHHhcCCCCCCeEEECCCChhhccEEEcCCEEEEe
Confidence 334555655 578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHhhhcCCCCccchHHHHHHHHHHhccccccccccccccccccCCCCChhHHHHhcCCEEEEEeCCCC
Q 001052 338 AAVRLTELLKMFRKVVTERPAHETSSCKAFIEQIKWFAGTQIKNVASVGGNICTASPISDLNPLWMASGAKFHIVDCKGN 417 (1172)
Q Consensus 338 A~vTl~~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp~sD~~~~Llal~A~v~l~s~~g~ 417 (1172)
|++||+|+.+.++. .+|.|++++++|||+||||+|||||||++++|+||++|+|+||||+|+|.+.+|
T Consensus 260 A~vT~~el~~~l~~-----------~~p~L~~a~~~ias~qIRN~aTiGGNI~~asP~sD~~p~LlALdA~v~l~~~~G- 327 (467)
T TIGR02963 260 AAVTLTDAYAALAK-----------RYPELGELLRRFASLQIRNAGTLGGNIANGSPIGDSPPALIALGARLTLRKGEG- 327 (467)
T ss_pred cCCcHHHHHHHHHH-----------HhHHHHHHHHHhCCHHHcCceecccccccCCCchHHHHHHHHcCCEEEEEcCCC-
Confidence 99999999865543 466799999999999999999999999999999999999999999999999999
Q ss_pred eEEEehHhhhcccccccCCCCeEEEEEEccCCCCccceeeeeecccCccccceeeeEEEEEEecCCcceEEEEEEEEEcc
Q 001052 418 IRTTMAEEFFLGYRKVDLTSGEILLSIFLPWTRPFEFVKEFKQAHRRDDDIALVNAGMRVYLEEKDEEWVVSDALLVYGG 497 (1172)
Q Consensus 418 ~R~vpl~dF~~g~~~t~L~~~Eil~~I~iP~~~~~~~~~~~K~~~R~~~dia~v~~A~~~~~~~~~~~~~i~~~ria~Gg 497 (1172)
+|+||++|||.||+++.|+++|||++|+||.+..+.++.+||+++|+++|||+||+|+.+++++ + +|+++||+|||
T Consensus 328 ~R~vpl~dF~~g~~kt~L~~~EiI~~I~iP~~~~~~~~~~~K~~~R~~~dia~V~~A~~v~~~~-~---~i~~~ria~Gg 403 (467)
T TIGR02963 328 RRTLPLEDFFIDYGKTDRQPGEFVEALHVPRPTPGERFRAYKISKRFDDDISAVCAAFNLELDG-G---VVAEIRIAFGG 403 (467)
T ss_pred cEEEeHHHhhcccccccCCCCceEEEEEecCCCCCCceEEEEecccccccceeeEEEEEEEEcC-C---eEeEEEEEEec
Confidence 9999999999999999999999999999998766678889999999999999999999999974 4 89999999999
Q ss_pred CCCccccHHHHHHHhcCCCCCHHHHHHHHHhhccccccCCCCCCCChhHHHHHHHHHHHHHHHH
Q 001052 498 VAPLSLSAKKTKTFIVGKSWSQELLQNALKILQTDIILKEDAPGGMVDFRKSLTLSFFFKFFLW 561 (1172)
Q Consensus 498 v~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~e~~~~~~~~~~saeYR~~la~~L~~r~l~~ 561 (1172)
|+++|+|+.++|++|.|+.|+++++++|++.+.+++.|.++ .++|++||++|+.+|++|||.+
T Consensus 404 va~~p~r~~~~E~~L~G~~~~~~~l~~a~~~l~~~~~p~~d-~r~sa~YR~~la~~l~~r~~~~ 466 (467)
T TIGR02963 404 MAATPKRAAATEAALLGKPWNEATVEAAMAALAGDFTPLSD-MRASAEYRLLTAKNLLRRFFLE 466 (467)
T ss_pred CCCCceehHHHHHHhcCCCCCHHHHHHHHHHHHhhCCCCCC-CCCCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999975555 4799999999999999999976
No 13
>TIGR03194 4hydrxCoA_A 4-hydroxybenzoyl-CoA reductase, alpha subunit. This model represents the largest chain, alpha, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=100.00 E-value=1.6e-110 Score=1048.20 Aligned_cols=537 Identities=24% Similarity=0.309 Sum_probs=486.4
Q ss_pred ccccCccccccceeeccccCCCCCCcEEEEEEecCCCCeEeeccChhhhccCCCEEEEEecCCCCCCCCCCCCCCCcccc
Q 001052 611 EVHLSSRLQVTGEAEYTDDTPMPPNCLHAALVLSRRPHARILSIDDSGARSSPGFVGIFFAEDVQGDNRIGPVVADEELF 690 (1172)
Q Consensus 611 ~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~sID~s~A~~~pGVv~Vvt~~Dipg~n~~~~~~~d~~~l 690 (1172)
++|+|+..||||+++|++|+.+ |||||+++||||++||+|++||+++|+++|||++|+|++|+|..........|+|+|
T Consensus 1 ~~R~d~~~kvtG~a~Y~~D~~~-pgmL~a~vvrSp~ahA~I~siD~s~A~a~pGV~~V~t~~D~p~~~g~~~~~~d~~~l 79 (746)
T TIGR03194 1 VPLVDGVEKVTGKAKYTADLAA-PGALVGRILRSPHAHARILAIDTSEAEALPGVIAVVTGADCPVPYGVLPIAENEYPL 79 (746)
T ss_pred CcCcchHhhCccccccccCCCC-CCCEEEEEEecCCccEEEeeccHHHHHhCCCcEEEEeHHHCCcccCCCCCCCCCccC
Confidence 4799999999999999999998 799999999999999999999999999999999999999998522111223589999
Q ss_pred ccCeEEecCCeEEEEEECCHHHHHHhcccCeeEEecCCccCCHHHHhhcCCC--CCCC------ccccccCCcccccccC
Q 001052 691 ASEVVTCVGQVIGVVVAETHEEAKLASRKVQVEYEELPAILSIQEAIDAKSF--HPNT------ERCFRKGDVDICFQSG 762 (1172)
Q Consensus 691 a~~~V~y~GqpVa~VvAet~~~A~~Aa~~V~V~ye~lp~v~~~~~A~~~~a~--~~~~------~~~~~~Gd~e~af~~~ 762 (1172)
++++|||+|||||+|+|+|+++|++|+++|+|+||+||+++|+++|+++++. |++. ...+.+||++++| +
T Consensus 80 a~~~Vr~~G~~VA~VvA~t~~~A~~A~~~v~Veye~lp~v~d~~~Al~~~a~~ih~~~~~Nv~~~~~~~~Gd~~~a~--~ 157 (746)
T TIGR03194 80 ARDKVRYRGDPVAAVAAVDEVTAEKALALIKVEYEELPAYMDPKAAMKAGAILLHDNKPGNIEREVHNEFGDVAAAF--A 157 (746)
T ss_pred CCCeEEEcCCeEEEEEECCHHHHHHHhcCCcEEEecCCCcCCHHHHhcCCCCccCCCCCCcEEEEEeeccCCHhHHh--c
Confidence 9999999999999999999999999999999999999999999999988764 4311 1346789999999 9
Q ss_pred CCcEEEEEEEEECcccccCCCCCeEEEEEecCCCeEEEEeCCCChHHHHHHHHHHhCCCCccEEEEeCccCCCCCCCCCc
Q 001052 763 QCDKIIEGEVRVGGQEHFYLEPHSSVVWTMDHGNEVHMISSTQAPQKHQKYVSHVLGLPMSKVVCKTKRIGGGFGGKETR 842 (1172)
Q Consensus 763 ~a~~vve~~y~~~~~~H~~mEp~~a~A~~~~~~g~l~V~~stQ~p~~~r~~vA~~Lglp~~kV~V~~~~vGGgFG~K~~~ 842 (1172)
+|+++||++|++++|+|+||||++|+|+|++++|+|+||+|||+|+.+|..+|++||||++||||+.+++|||||+|...
T Consensus 158 ~a~~vve~~~~~~~~~h~~mEp~~~~A~~~~~~~~l~v~~stQ~p~~~r~~va~~Lglp~~kVrV~~~~vGGgFG~K~~~ 237 (746)
T TIGR03194 158 EADLIREKTFTCAEVNHAHMEPNATLAEYDPVRGMLTLNSVTQVPYYVHLKLARCLQMDSARIRVIKPFLGGGFGARVEP 237 (746)
T ss_pred cCCEEEEEEEEECCEeEEccCCCeEEEEEeCCCCeEEEEECCCchHHHHHHHHHHhCCCHHHeEEEcCCCcCcccccccc
Confidence 99999999999999999999999999999854578999999999999999999999999999999999999999999875
Q ss_pred chHHHHHHHHHHHhCCCCEEEEeChhhhhhhcCCCCceEEEEEEeeCCCCcEEEEEEeEEecCCCCCCchHHHHHHHhhc
Q 001052 843 SAFIAAAAAVPSFLLNRPVNLTLDRDIDMMISGQRHSFLGKYKVGFTNEGKVLALDLEIYNNAGNSLDLSLAVLERAMFH 922 (1172)
Q Consensus 843 ~~~~~~~aAlaA~k~gRPVkl~~tR~E~~~~~~~R~~~~~~~k~g~d~dG~i~a~~~~~~~d~Ga~~~~s~~v~~~~~~~ 922 (1172)
..+++.||++|+++||||||+|||+|+|..+.+||++.+++|+|+|+||+|+|++++++.|+|+|.+.+..++......
T Consensus 238 -~~~~~~aal~a~~~grPVk~~~~ReE~~~~~~~R~~~~~~~~~g~~~dG~i~a~~~~~~~d~Gay~~~~~~~~~~~~~~ 316 (746)
T TIGR03194 238 -LNFEIIAGLLARKAKGTVRLLQTREETFITHRGRPQTYVKMKIGLKKDGKITACAAEVVQRGGAYAGYGIVTILYAGAL 316 (746)
T ss_pred -chHHHHHHHHHHHhCCCEEEecchhhhhhcCCCCCceEEEEEEEECCCCeEEEEEEEEeecccccCCcchHHHHHHHHh
Confidence 3467899999999999999999999999999999999999999999999999999999999999998887777777778
Q ss_pred cCCCCCCCeEEEEEEEEecCCCCCCccCCCChhhhHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCcccccccccCCCH
Q 001052 923 SDNVYEIPNVRIMGNVCFTNFPSNTAFRGFGGPQGMLITENWIQRVAVEVRKSPEEIREINFQGEGSILHYGQQLQHCTL 1002 (1172)
Q Consensus 923 ~~~~Y~ipn~~~~~~~v~TN~~~~ga~RG~G~~q~~fa~Es~mDelA~~lg~DP~e~R~~Nl~~~g~~~~~g~~~~~~~l 1002 (1172)
+.++|+|||++++++.|+||++|+|+|||||.+|+.|++|++||++|++|||||+|||+||++++++.+++|+.++++++
T Consensus 317 ~~g~Y~ipn~~~~~~~v~TN~~~~ga~Rg~G~~q~~fa~E~~mD~lA~~lg~DPve~R~~N~~~~~~~~~~g~~~~s~~~ 396 (746)
T TIGR03194 317 LHGLYDIPAVKYDGYRVYTNTPPCGAMRGHGTVDTRAAFESLLDEMAAELGIDPFAIRRRNLLQAPTVTMNDLRVMSYGL 396 (746)
T ss_pred cCCCcccceEEEEEEEEEcCCCCCCCCCCCChhHHHHHHHHHHHHHHHHhCcCHHHHHHHhCcCCCCCCCCCceecCCCH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcChHhhHHHHhhcccCCCcceeeeEEeeeeccccccc----ccccccceEEEEeeCCeEEEEeCCccCCC
Q 001052 1003 FPLWNELKLSCDFLNARKEVDNFNLNNRWKKRGIAMVPTKFGISFTL----KLMNQAGALVHVYTDGTVLVTHGGVEMGQ 1078 (1172)
Q Consensus 1003 ~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~grGia~~~~~~g~~~~~----~~~~~~~a~V~v~~DGsV~V~~g~~e~GQ 1078 (1172)
++||++++++++|++|++.. +++||++++...++.+.+. ...+.+++.|++++||+|+|.+|++||||
T Consensus 397 ~~~l~~~~e~~~w~~~~~~~--------~~~rGiG~a~~~~~~~~~~~~~~~~~~~~~a~v~l~~dG~v~v~~g~~e~Gq 468 (746)
T TIGR03194 397 PECLEKVEQASGWEERKGRL--------PKGRGLGIACSHFVSGSAKPIHFTGEPHATVALKLDFDGGITLLTGAADIGQ 468 (746)
T ss_pred HHHHHHHHHhcCchhhhhhc--------cccEEEEEEEEEEeccCCcccccCCCCCceEEEEEcCCccEEEEEcCCCCCC
Confidence 99999999999998765421 1245555554444322210 11346789999999999999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCCccCcccchhHHhHHHHHHHHHHHHHHHHHHHHhCC-----------
Q 001052 1079 GLHTKVAQVAASAFNIPLSSVFVSETSTDKVPNASPTAASASSDIYGAAVLDACEQIKARMEPIASKHN----------- 1147 (1172)
Q Consensus 1079 G~~T~~~QIaAe~Lgip~e~V~v~~~dT~~~p~~~~t~~Sr~t~~~g~Av~~A~~~Lr~rL~~~aa~~~----------- 1147 (1172)
|++|+++||+|++||+|+|+|+|..+||+.+|++++|+|||+|++.|.||++||++||+||+++|+++.
T Consensus 469 G~~T~~~qiaAe~LGip~d~V~v~~~DT~~~p~~~gt~~Sr~t~~~G~Av~~Aa~~l~~~l~~~aa~~l~~~~~~l~~~~ 548 (746)
T TIGR03194 469 GSSTIASQVAAEVLGVRLSRIRVISADSALTPKDNGSYSSRVTFMVGNAAIDAAEELKGVLVAAAAKKLDAREEDIECAG 548 (746)
T ss_pred CHHHHHHHHHHHHhCCCHHhEEEEccCCCCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHEEEEC
Confidence 999999999999999999999999999999999999999999999999999999999999999988752
Q ss_pred -----------CCCHHHHHHHHh
Q 001052 1148 -----------FNSFAEKIIMFC 1159 (1172)
Q Consensus 1148 -----------~~~w~~~i~~~~ 1159 (1172)
..+|.++...++
T Consensus 549 g~v~~~~~~~~~~~~~~~~~~~~ 571 (746)
T TIGR03194 549 EMFFVSGSADPGLSFQEVVKAAL 571 (746)
T ss_pred CEEEECCCCCCceeHHHHHHHhc
Confidence 257999986543
No 14
>PRK09970 xanthine dehydrogenase subunit XdhA; Provisional
Probab=100.00 E-value=2.2e-110 Score=1051.39 Aligned_cols=546 Identities=27% Similarity=0.363 Sum_probs=495.5
Q ss_pred ccCCcccccCccccccceeeccccCCCCCCcEEEEEEecCCCCeEeeccChhhhccCCCEEEEEecCCCCCCCC--CCC-
Q 001052 606 SVGSPEVHLSSRLQVTGEAEYTDDTPMPPNCLHAALVLSRRPHARILSIDDSGARSSPGFVGIFFAEDVQGDNR--IGP- 682 (1172)
Q Consensus 606 ~vG~~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~sID~s~A~~~pGVv~Vvt~~Dipg~n~--~~~- 682 (1172)
+|||+++|+|+..||||+++|++|+.+ |||||++++|||++||||++||+++|++||||++|+|++|+|+.|. .+.
T Consensus 2 ~vG~~~~r~d~~~kvtG~~~Y~~D~~~-~gmL~a~~~rSp~aharI~siD~~~A~~~pGV~~Vvt~~D~p~~~~~~~~~~ 80 (759)
T PRK09970 2 AIGKSIMRVDAIAKVTGRAKYTDDYVM-AGMLYAKYVRSPIAHGKVKSIDTEEARSLPGVEAVFTWEDVPDIPFPTAGHP 80 (759)
T ss_pred CCCCCCcCcchHHhCcCCccccccCCC-CCCEEEEEEcCCCceEEEeeeeHHHHHhCCCcEEEEeHHHcCCccccccccc
Confidence 489999999999999999999999998 7999999999999999999999999999999999999999986542 111
Q ss_pred -------CCCCccccccCeEEecCCeEEEEEECCHHHHHHhcccCeeEEecCCccCCHHHHhhcCC--CCC---C--Ccc
Q 001052 683 -------VVADEELFASEVVTCVGQVIGVVVAETHEEAKLASRKVQVEYEELPAILSIQEAIDAKS--FHP---N--TER 748 (1172)
Q Consensus 683 -------~~~d~~~la~~~V~y~GqpVa~VvAet~~~A~~Aa~~V~V~ye~lp~v~~~~~A~~~~a--~~~---~--~~~ 748 (1172)
...|+|+|++++|||+|||||+|+|+|+++|++|+++|+|+||+||+++++++|+++++ +|+ | ...
T Consensus 81 ~~~~~~~~~~~~~~la~~~Vr~~G~~VAaVvA~~~~~A~~A~~~i~Veye~lp~v~~~~~Al~~~a~~ih~~~~ni~~~~ 160 (759)
T PRK09970 81 WSLDPNHRDIADRALLTRHVRHHGDAVAAVVARDELTAEKALKLIKVEYEELPVITDPEAALAEGAPPIHNGRGNLLKQS 160 (759)
T ss_pred cCCCCCCCCCCCccCcCCEEEEcCCeEEEEEeCCHHHHHHHhCCCcEeEEeCCccCCHHHHhCCCCCccCCCCCceeeee
Confidence 11378999999999999999999999999999999999999999999999999998876 342 1 123
Q ss_pred ccccCCcccccccCCCcEEEEEEEEECcccccCCCCCeEEEEEecCCCeEEEEeCCCChHHHHHHHHHHhCCCCccEEEE
Q 001052 749 CFRKGDVDICFQSGQCDKIIEGEVRVGGQEHFYLEPHSSVVWTMDHGNEVHMISSTQAPQKHQKYVSHVLGLPMSKVVCK 828 (1172)
Q Consensus 749 ~~~~Gd~e~af~~~~a~~vve~~y~~~~~~H~~mEp~~a~A~~~~~~g~l~V~~stQ~p~~~r~~vA~~Lglp~~kV~V~ 828 (1172)
.+.+||++++| ++|+++||++|++++|+|+||||++|+|+|+ ++|+|+||+|||+|+.+|..+|++||||++||||+
T Consensus 161 ~~~~Gd~~~a~--~~a~~vve~~y~~~~~~h~~mEp~~~iA~~~-~~g~l~v~~stQ~p~~~~~~ia~~Lglp~~~VrV~ 237 (759)
T PRK09970 161 TMSTGNVQQTI--KAADYQVQGHYETPIVQHCHMENVTSYAYME-DDGRITIVSSTQIPHIVRRVVGQALGIPWGKVRVI 237 (759)
T ss_pred eeccCChhHhh--ccCCEEEEEEEEECCEeEeccCCceEEEEEC-CCCCEEEEECCCcHHHHHHHHHHHhCCCHHHEEEE
Confidence 46789999999 9999999999999999999999999999997 46789999999999999999999999999999999
Q ss_pred eCccCCCCCCCCCcchHHHHHHHHHHHhC-CCCEEEEeChhhhhhhcCCCCceEEEEEEeeCCCCcEEEEEEeEEecCCC
Q 001052 829 TKRIGGGFGGKETRSAFIAAAAAVPSFLL-NRPVNLTLDRDIDMMISGQRHSFLGKYKVGFTNEGKVLALDLEIYNNAGN 907 (1172)
Q Consensus 829 ~~~vGGgFG~K~~~~~~~~~~aAlaA~k~-gRPVkl~~tR~E~~~~~~~R~~~~~~~k~g~d~dG~i~a~~~~~~~d~Ga 907 (1172)
.+++|||||+|.+... ...||++|+++ ||||||+|||+|+|+.+++||++.+++|+|+|+||+|+|++++++.|+|+
T Consensus 238 ~~~vGGgFG~K~~~~~--~~~aa~la~~~~grPVk~~~~R~E~~~~~~~r~~~~~~~~~g~~~dG~i~a~~~~~~~d~Ga 315 (759)
T PRK09970 238 KPYVGGGFGNKQDVLE--EPLAAFLTSKVGGRPVKVSLSREECFLATRTRHAFTIDIKMGVNRDGTLKGYSLDVLSNTGA 315 (759)
T ss_pred eCCCCCCcCcccccCH--HHHHHHHHHHhcCCCeEEeechhHhhhcCCCCCceEEEEEEEECCCCcEEEEEEEEeecccc
Confidence 9999999999987533 45678888888 99999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHhhccCCCCCCCeEEEEEEEEecCCCCCCccCCCChhhhHHHHHHHHHHHHHHcCCCHHHHHHHhcCCC
Q 001052 908 SLDLSLAVLERAMFHSDNVYEIPNVRIMGNVCFTNFPSNTAFRGFGGPQGMLITENWIQRVAVEVRKSPEEIREINFQGE 987 (1172)
Q Consensus 908 ~~~~s~~v~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~RG~G~~q~~fa~Es~mDelA~~lg~DP~e~R~~Nl~~~ 987 (1172)
|.+.+..++..+...+.++|+|||++++++.|+||++|+|+|||||.+|++|++|++||++|++|||||+|||+||++++
T Consensus 316 y~~~~~~~~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~Rg~G~~q~~fa~E~~mD~~A~~lg~DP~e~R~~N~~~~ 395 (759)
T PRK09970 316 YASHGHSIASAGGNKVAYLYPRCAYKYSSKTVYTNLPSAGAMRGYGAPQVVFAVESMLDDAATALGIDPVEFRLRNAARE 395 (759)
T ss_pred CCCcchHHHHHHHhhcCCCccCceEEEEEEEEECCCCCCCCCCCCChhHHHHHHHHHHHHHHHHhCcCHHHHHHHhCCCC
Confidence 99888777777777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccc-cccccCCCHHHHHHHHHhhcChHhhHHHHhhcccCCCcceeeeEEeeeecccccccccccccceEEEEeeCCe
Q 001052 988 GSILHY-GQQLQHCTLFPLWNELKLSCDFLNARKEVDNFNLNNRWKKRGIAMVPTKFGISFTLKLMNQAGALVHVYTDGT 1066 (1172)
Q Consensus 988 g~~~~~-g~~~~~~~l~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~grGia~~~~~~g~~~~~~~~~~~~a~V~v~~DGs 1066 (1172)
|+.+++ |+.++++++++||++++++++|+++++..+. .+.|++||+|++...++.++.....+++++.|+|++||+
T Consensus 396 g~~~~~~g~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~rGiG~a~~~~~~~~~~~~~~~~~a~v~i~~dGs 472 (759)
T PRK09970 396 GDANPLSGKRIYSAGLPECLEKGRKIFEWDKRRAECKN---QQGNLRRGVGVACFSYTSGTWPVGLEIAGARLLMNQDGT 472 (759)
T ss_pred CCcCCCCCeeecCCCHHHHHHHHHHhcCchhhhHhHhh---hcCCceEEEEEEEEEEeecCCCCCCCcceEEEEEccCce
Confidence 998885 8889999999999999999999987654332 123466788887766665543223457889999999999
Q ss_pred EEEEeCCccCCCChHHHHHHHHHHHhCCCCCcEEEEeC-CCCCCCCCccCcccchhHHhHHHHHHHHHHHHHHHHHHHHh
Q 001052 1067 VLVTHGGVEMGQGLHTKVAQVAASAFNIPLSSVFVSET-STDKVPNASPTAASASSDIYGAAVLDACEQIKARMEPIASK 1145 (1172)
Q Consensus 1067 V~V~~g~~e~GQG~~T~~~QIaAe~Lgip~e~V~v~~~-dT~~~p~~~~t~~Sr~t~~~g~Av~~A~~~Lr~rL~~~aa~ 1145 (1172)
|+|.+|.+|||||+.|+++||+||+||+|+++|+|..+ ||+.+|++++|+|||++.+.|.|+++||++||++|+++|++
T Consensus 473 v~v~~g~~e~GQG~~T~~aQiaAe~LGi~~~~V~v~~~~dT~~~p~~~gt~aSr~t~~~g~Av~~Aa~~lr~~l~~~aa~ 552 (759)
T PRK09970 473 VQVQSGATEIGQGSDTVFSQMVAETVGIPVSDVRVISTQDTDVTPFDPGAYASRQSYVAGPAIRKAALELKEKILAHAAV 552 (759)
T ss_pred EEEEECCCCcCCCHHHHHHHHHHHHhCCCHHhEEEEccCCCCCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988 99999999999999999999999999999999999999887
Q ss_pred CC----------------------CCCHHHHHHHHhc
Q 001052 1146 HN----------------------FNSFAEKIIMFCN 1160 (1172)
Q Consensus 1146 ~~----------------------~~~w~~~i~~~~~ 1160 (1172)
+. ..+|.+++..++.
T Consensus 553 ~l~~~~~~l~~~~G~v~~~~~~~~~~~~~~la~~a~~ 589 (759)
T PRK09970 553 MLHQSAMNLDIIDGHIVVKRPGEPLMSLEELAMDAYY 589 (759)
T ss_pred HhCCChHHEEEECCEEEECCCCCccccHHHHHHHhhc
Confidence 52 2668889887753
No 15
>TIGR02416 CO_dehy_Mo_lg carbon-monoxide dehydrogenase, large subunit. This model represents the large subunits of group of carbon-monoxide dehydrogenases that include molybdenum as part of the enzymatic cofactor. There are various forms of carbon-monoxide dehydrogenase; Salicibacter pomeroyi DSS-3, for example, has two forms. Note that, at least in some species, the active site Cys is modified with a selenium attached to (rather than replacing) the sulfur atom. This is termed selanylcysteine, and created post-translationally, in contrast to selenocysteine incorporation during translation as for many other selenoproteins.
Probab=100.00 E-value=8.2e-108 Score=1028.30 Aligned_cols=542 Identities=24% Similarity=0.292 Sum_probs=470.0
Q ss_pred CccccccceeeccccCCCCCCcEEEEEEecCCCCeEeeccChhhhccCCCEEEEEecCCCCCCCC--CCCCC-CCccccc
Q 001052 615 SSRLQVTGEAEYTDDTPMPPNCLHAALVLSRRPHARILSIDDSGARSSPGFVGIFFAEDVQGDNR--IGPVV-ADEELFA 691 (1172)
Q Consensus 615 d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~sID~s~A~~~pGVv~Vvt~~Dipg~n~--~~~~~-~d~~~la 691 (1172)
|+.++|||+++|++|+.+ |||||+++||||++||+|++||+|+|++||||++|+|++|+|+.+. .+... .++|+|+
T Consensus 1 e~~r~vtG~a~Y~~Di~~-pgmL~a~~vrSp~aha~I~~ID~s~A~~~pGV~~V~t~~D~p~~~~~~~~~~~~~~~~~la 79 (770)
T TIGR02416 1 EDIRFIQGKGNYVDDVKL-PGMLHGDIVRSPHAHARIKSIDTSAAKALPGVFAVLTAADLKPLNLHWMPTLAGDVQAVLA 79 (770)
T ss_pred CCcccccccccccccCCC-CCCEEEEEEcCCCccEEEecccHHHHhhCCCcEEEEEHHHcCCccCCcCCCCCCCCcccCc
Confidence 567899999999999998 7999999999999999999999999999999999999999986542 12111 2389999
Q ss_pred cCeEEecCCeEEEEEECCHHHHHHhcccCeeEEecCCccCCHHHHhhcCCC--CCCC----------------cccc---
Q 001052 692 SEVVTCVGQVIGVVVAETHEEAKLASRKVQVEYEELPAILSIQEAIDAKSF--HPNT----------------ERCF--- 750 (1172)
Q Consensus 692 ~~~V~y~GqpVa~VvAet~~~A~~Aa~~V~V~ye~lp~v~~~~~A~~~~a~--~~~~----------------~~~~--- 750 (1172)
+++|||+|||||+|||+|+++|++|+++|+|+||+||+++|+++|+++++. |+.. ...+
T Consensus 80 ~~~Vry~Ge~Va~VvA~t~~~A~~A~~~v~V~ye~lp~v~d~~~A~~~~a~~ih~~~~~~~~~~~~~~n~~~~~~~~~~g 159 (770)
T TIGR02416 80 DEKVLFQNQEVAFVVAKDRYVAADAIELVEVDYEPLPVVIDPFKALEPDAPVLREDLKGKTTGAHGARKHHNHIFRWEIG 159 (770)
T ss_pred CCEEEEcCCcEEEEEECCHHHHHHHhccceeeeecCCccCCHHHHhcCCCceecCCCCCccccccccccccceeeEEecC
Confidence 999999999999999999999999999999999999999999999987763 3210 0112
Q ss_pred ccCCcccccccCCCcEEEEEEEEECcccccCCCCCeEEEEEecCCCeEEEEeCCCChHHHHHHHHHHhCCCCccEEEEeC
Q 001052 751 RKGDVDICFQSGQCDKIIEGEVRVGGQEHFYLEPHSSVVWTMDHGNEVHMISSTQAPQKHQKYVSHVLGLPMSKVVCKTK 830 (1172)
Q Consensus 751 ~~Gd~e~af~~~~a~~vve~~y~~~~~~H~~mEp~~a~A~~~~~~g~l~V~~stQ~p~~~r~~vA~~Lglp~~kV~V~~~ 830 (1172)
+.||++++| ++|+++||++|++++|+|+||||++|+|+|++++|+|+||+|||+|+.+|..||++||||++||||+++
T Consensus 160 d~gd~~~af--~~a~~vve~~~~~~~~~h~~mEp~~~iA~~~~~~g~l~v~~stQ~p~~~r~~vA~~Lglp~~~VrV~~~ 237 (770)
T TIGR02416 160 DKAATDAVF--AKAEVVVKQMMTYPRVHPSPLETCGCVASMDPIKGELTLWGTFQAPHVIRTVVSLISGLPEHKIRVISP 237 (770)
T ss_pred CccchhHHh--ccCCEEEEEEEEeCceeeEcCCCCeEEEEEeCCCCeEEEEECCCcHHHHHHHHHHHhCCCHHHEEEEcC
Confidence 345679999 999999999999999999999999999999843578999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCcchHHHHHHHHHHHhCCCCEEEEeChhhhhhhcCCCCceEEEEEEeeCCCCcEEEEEEeEEecCCCCCC
Q 001052 831 RIGGGFGGKETRSAFIAAAAAVPSFLLNRPVNLTLDRDIDMMISGQRHSFLGKYKVGFTNEGKVLALDLEIYNNAGNSLD 910 (1172)
Q Consensus 831 ~vGGgFG~K~~~~~~~~~~aAlaA~k~gRPVkl~~tR~E~~~~~~~R~~~~~~~k~g~d~dG~i~a~~~~~~~d~Ga~~~ 910 (1172)
++|||||+|......+ +.||++|+++||||||+|||+|+|+.+++||++.+++|+|+|+||+|+|++++++.|+|+|.+
T Consensus 238 ~vGGgFG~K~~~~~~~-~~aa~~A~~~gRPVk~~~sR~E~~~~~~~r~~~~~~~k~g~d~dG~i~a~~~~~~~d~Gay~~ 316 (770)
T TIGR02416 238 DIGGGFGNKVGIYPGY-VCAIVASIVLGVPVKWVEDRMENLSTTSFARDYHMTGELAATKDGKILAMRCNVLADHGAFDA 316 (770)
T ss_pred CCCCCcccccccccHH-HHHHHHHHHhCCCEEEecchHHhhhcCCCCCceEEEEEEEECCCCcEEEEEEEEEeeccccCC
Confidence 9999999998753333 458899999999999999999999999999999999999999999999999999999999987
Q ss_pred chHHHHHHHhh--ccCCCCCCCeEEEEEEEEecCCCCCC-ccC-CCChhhhHHHHHHHHHHHHHHcCCCHHHHHHHhcCC
Q 001052 911 LSLAVLERAMF--HSDNVYEIPNVRIMGNVCFTNFPSNT-AFR-GFGGPQGMLITENWIQRVAVEVRKSPEEIREINFQG 986 (1172)
Q Consensus 911 ~s~~v~~~~~~--~~~~~Y~ipn~~~~~~~v~TN~~~~g-a~R-G~G~~q~~fa~Es~mDelA~~lg~DP~e~R~~Nl~~ 986 (1172)
.+..+...... .+.++|+|||++++++.|+||++|.+ +|| |||.||+.|++|++||++|++|||||+|||++|+++
T Consensus 317 ~~~~~~~~~~~~~~~~g~Y~ipn~~~~~~~v~TN~~p~gta~Rgg~G~pq~~fa~E~~mD~~A~~lg~DP~e~R~~N~~~ 396 (770)
T TIGR02416 317 CADPSKWPAGFFNICTGSYDIPVAHCAVDGVYTNKAPGGVAYRCSFRVTEAVYAIERAVDTLAQRLEMDSADLRIKNFIQ 396 (770)
T ss_pred CccchhhhhhhhhhcCCccccceEEEEEEEEECCCCCCCCccccCCccHHHHHHHHHHHHHHHHHhCcCHHHHHHHhCCC
Confidence 65544443222 46899999999999999999999997 999 899999999999999999999999999999999998
Q ss_pred CCC---cccccccccCCCHHHHHHHHHhhcChHhhHHHHhhcccCCC---cceeeeEEeeeecccccccc-----ccccc
Q 001052 987 EGS---ILHYGQQLQHCTLFPLWNELKLSCDFLNARKEVDNFNLNNR---WKKRGIAMVPTKFGISFTLK-----LMNQA 1055 (1172)
Q Consensus 987 ~g~---~~~~g~~~~~~~l~~~l~~~~~~~~~~~r~~~~~~~~~~~~---~~grGia~~~~~~g~~~~~~-----~~~~~ 1055 (1172)
+++ .+++|+.+++..+++||+++++.++|++++++.+.+++.++ .+|+|+++.....+.+.... ....+
T Consensus 397 ~~~~p~~~~~g~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~G~G~a~~~~~~~~~~~~~~~~~~~~~~~ 476 (770)
T TIGR02416 397 PEQFPYTAPLGWEYDSGDYPLAMKKAMDTVDYHQLRAEQAAKRKRGETRELMGIGISFFTEIVGAGPSKNCDILGVGMFD 476 (770)
T ss_pred CccCccccCCCceecCCCHHHHHHHHHHhcCchhhHHHHHHHHhcCCCCceEEEEEEEEEEeccCCCcccccccccCccc
Confidence 865 34558999999999999999999999987655443444343 23455544322222221000 00135
Q ss_pred ceEEEEeeCCeEEEEeCCccCCCChHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCCccCcccchhHHhHHHHHHHHHHH
Q 001052 1056 GALVHVYTDGTVLVTHGGVEMGQGLHTKVAQVAASAFNIPLSSVFVSETSTDKVPNASPTAASASSDIYGAAVLDACEQI 1135 (1172)
Q Consensus 1056 ~a~V~v~~DGsV~V~~g~~e~GQG~~T~~~QIaAe~Lgip~e~V~v~~~dT~~~p~~~~t~~Sr~t~~~g~Av~~A~~~L 1135 (1172)
.+.|+|++||+|+|.+|++|||||++|+++||+|++||||+|+|+|..+||+.+|++++|+|||+|.+.|.|+++||++|
T Consensus 477 ~a~v~l~~dG~v~v~~g~~e~GQG~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~gt~~Sr~t~~~G~Av~~Aa~~l 556 (770)
T TIGR02416 477 SCEIRIHPTGSAIARMGTKSQGQGHETTYAQIIATELGIPAEDIMVEEGDTDTAPYGLGTYGSRSTPVAGAATALAARKI 556 (770)
T ss_pred eEEEEECCCceEEEEECCCCCCCCchHHHHHHHHHHHCCCHHHEEEEecCCCCCCCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC----------------------CCCHHHHHHHHhc
Q 001052 1136 KARMEPIASKHN----------------------FNSFAEKIIMFCN 1160 (1172)
Q Consensus 1136 r~rL~~~aa~~~----------------------~~~w~~~i~~~~~ 1160 (1172)
|+||+++|+++. ..+|.+++..++.
T Consensus 557 ~~~l~~~aa~~l~~~~~~l~~~~g~v~~~~~~~~~~~~~~l~~~~~~ 603 (770)
T TIGR02416 557 KAKAQMIAAHMLEVHEGDLEWDVDRFRVKGDPSKFKTMADIAWAAYN 603 (770)
T ss_pred HHHHHHHHHHHhCCCHHHEEEECCEEEECCCCCCcccHHHHHHHHhc
Confidence 999999987641 1479999888754
No 16
>COG1529 CoxL Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]
Probab=100.00 E-value=3.7e-81 Score=780.94 Aligned_cols=528 Identities=29% Similarity=0.381 Sum_probs=470.7
Q ss_pred CccCCcccccCccccccceeeccccCCCCCCcEEEEEEecCCCCeEeeccChhhhccCCCEEEEEecCCCCC-CCCCCCC
Q 001052 605 TSVGSPEVHLSSRLQVTGEAEYTDDTPMPPNCLHAALVLSRRPHARILSIDDSGARSSPGFVGIFFAEDVQG-DNRIGPV 683 (1172)
Q Consensus 605 ~~vG~~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~sID~s~A~~~pGVv~Vvt~~Dipg-~n~~~~~ 683 (1172)
..+|+++.|.|+..||||+++|++|+.. +||+|++|||||++|++|++||.++|+++|||++|+|++|+|. .+.....
T Consensus 4 ~~~gr~~~R~~~~~~vtG~~~y~~d~~~-~~~~~~~~vrs~~a~a~i~~id~~ea~~~~gv~av~ta~~l~~~~~~~~~~ 82 (731)
T COG1529 4 EIIGRSVLRADGLGKVTGKGRYADDIVA-PGMLYAAFVRSPYAHARIVSIDVSEAQGLPGVLAVITAEELPAWSPVRVEL 82 (731)
T ss_pred ccCCCCcccccchhheeeeeheehhhcC-CCCceEEEEeccCCceEEEEechHHHhhCCCeEEEechhhCcccccccccc
Confidence 5799999999999999999999999998 6999999999999999999999999999999999999999985 2221111
Q ss_pred CCCccccccCeEEecCCeEEEEEECCHHHHHHhcccCeeEEecCCccCCHHHHhhcCCC--CC--CCccccccCCccccc
Q 001052 684 VADEELFASEVVTCVGQVIGVVVAETHEEAKLASRKVQVEYEELPAILSIQEAIDAKSF--HP--NTERCFRKGDVDICF 759 (1172)
Q Consensus 684 ~~d~~~la~~~V~y~GqpVa~VvAet~~~A~~Aa~~V~V~ye~lp~v~~~~~A~~~~a~--~~--~~~~~~~~Gd~e~af 759 (1172)
.+..++|+.++|+|.||+|++|+|+|+++|++|+++|+|+|+++|+++++++|+.+++. |+ |.......||.| +|
T Consensus 83 ~p~~~~l~~~~v~~~G~~vA~vva~d~~~A~~aa~~v~V~ye~l~~~v~~~~a~~~~~~~ih~~~n~~~~~~~g~~~-a~ 161 (731)
T COG1529 83 APADEVLARGKVRYTGEPVAAVVAEDEYQARAAAELVLVEYEALPPVVDPEEALAEDAPVIHDELNIARDATFGDDD-AF 161 (731)
T ss_pred CCcchhhccCceEEeCCeEEEEEeCCHHHHHHHHhhceeeeccCCCcCCHHHHhcCCCcccccccccccccccccch-hh
Confidence 22222789999999999999999999999999999999999999999999999998763 33 124455677888 99
Q ss_pred ccCCCcEEEEEEEEECcccccCCCCCeEEEEEecCCCeEEEEeCCCChHHHHHHHHHHhCCCCccEEEEeCccCCCCCCC
Q 001052 760 QSGQCDKIIEGEVRVGGQEHFYLEPHSSVVWTMDHGNEVHMISSTQAPQKHQKYVSHVLGLPMSKVVCKTKRIGGGFGGK 839 (1172)
Q Consensus 760 ~~~~a~~vve~~y~~~~~~H~~mEp~~a~A~~~~~~g~l~V~~stQ~p~~~r~~vA~~Lglp~~kV~V~~~~vGGgFG~K 839 (1172)
++|+++++.+|.++++.|.+|||++++++|+ ++++|++|++||+|+.++..++++|++|+++|+|+.+++|||||+|
T Consensus 162 --a~A~~~v~~~~~~~~~~~~~~E~~g~~a~~~-d~~~lt~~~~tQ~~~~~~~~l~~~l~~p~~~vrvi~~dvGggfG~K 238 (731)
T COG1529 162 --AAAAVVVEAPYKTPRKDPNPMEPHGVVAVPD-DGDKLTVWASTQIPHRLRGMLAAVLGIPPSKVRVISPDVGGGFGSK 238 (731)
T ss_pred --hcCcEEeeeeeeccCcCccCcccccceeeEc-CCCeEEEEEccCCchHHHHHHHHHhCCCHHHeEEecCCCCcccCCc
Confidence 9999999999999999999999999999998 4559999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHhCCCCEEEEeChhhhhhhcCCCCceEEEEEEeeCCCCcEEEEEEeEEecCCCCCCchHHHHHHH
Q 001052 840 ETRSAFIAAAAAVPSFLLNRPVNLTLDRDIDMMISGQRHSFLGKYKVGFTNEGKVLALDLEIYNNAGNSLDLSLAVLERA 919 (1172)
Q Consensus 840 ~~~~~~~~~~aAlaA~k~gRPVkl~~tR~E~~~~~~~R~~~~~~~k~g~d~dG~i~a~~~~~~~d~Ga~~~~s~~v~~~~ 919 (1172)
... ......++++|+++||||||+++|+|.|..+++||+...++++++++||+|++++++++.|.|+|. +..+....
T Consensus 239 ~~~-~~~~~~~~~aa~~~grpVk~~~tR~e~~~~~~~~~~~~~~~~~~a~~dg~l~~~~~~~~~~~Gay~--~~~~~~~~ 315 (731)
T COG1529 239 GVV-YVEEILAALAAVVAGRPVKWIETREELFVATGHRRATLIDVKLGADKDGRLLAIKGTVAADTGAYN--GPTVPAAA 315 (731)
T ss_pred ccc-eeHHHHHHHHHHhcCCCeEEecchHHhhhccCCCCCceEEeeeecCcCCcEEeeeeeEEecCCCcc--ccchhHHH
Confidence 864 345566778999999999999999999999999999999999999999999999999999999996 44455666
Q ss_pred hhccCCCCCCCeEEEEEEEEecCCCCCCccCCCChhhhHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCCcccccccccC
Q 001052 920 MFHSDNVYEIPNVRIMGNVCFTNFPSNTAFRGFGGPQGMLITENWIQRVAVEVRKSPEEIREINFQGEGSILHYGQQLQH 999 (1172)
Q Consensus 920 ~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~RG~G~~q~~fa~Es~mDelA~~lg~DP~e~R~~Nl~~~g~~~~~g~~~~~ 999 (1172)
..++.++|.|+|+++..+.++||.+|+++|||+|.++++|++|++||+||++|||||+|+|++|++..|... ++..+++
T Consensus 316 ~~~~~g~Y~i~~~~~~~~~v~tn~~p~~~~Rg~g~~~~~~a~E~~~d~lA~~Lgidp~eiR~~n~~~~g~~~-~~~~~~~ 394 (731)
T COG1529 316 AGLARGPYKIEAVYIEPYLVHTNMPPNGAYRGAGRPEGTFALERAVDELAEELGIDPVEIRLRNLIRGGPFG-LGRRYDS 394 (731)
T ss_pred HHhcCCceecccceeeeEEEEcCCCCCcccccCCCchhHHHHHHHHHHHHHHhCCCHHHHhhhhccccCCCC-CcccccC
Confidence 777899999999999999999999999999999999999999999999999999999999999999987766 7788899
Q ss_pred CCHHHHHHHHHhhcChHhhHHHHhhcccCCCcceeeeEEeeeecccccccccccccceEEEEeeCCeEEEEeCCccCCCC
Q 001052 1000 CTLFPLWNELKLSCDFLNARKEVDNFNLNNRWKKRGIAMVPTKFGISFTLKLMNQAGALVHVYTDGTVLVTHGGVEMGQG 1079 (1172)
Q Consensus 1000 ~~l~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~grGia~~~~~~g~~~~~~~~~~~~a~V~v~~DGsV~V~~g~~e~GQG 1079 (1172)
.++.+++++++++++|.++.....+.+..+.++|+|+++.....+.+.+ ..+.|+++.||++.|.+|.+++|||
T Consensus 395 ~~~~~~~~~~ak~~~~~~~~~k~~~~re~~~~~G~g~a~~~~~~~~~~~------~~a~v~~~~~g~v~v~~g~~~~G~G 468 (731)
T COG1529 395 GDYLEELDEAAKRFGWSERPVKPIWTREGDLRRGVGRAMYTEPSGAGPG------EGARVRLEADGTVTVRTGATDIGQG 468 (731)
T ss_pred ccHHHHHHHHHHhcCcccccCChhhhhcCCeeeeeEEEEEEEeccCCCC------CcEEEEEcCCCcEEEEECCccCCCc
Confidence 9999999999999999876544444444444445555554333322211 4689999999999999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCCccCcccchhHHhHHHHHHHHHHHHHHHHHHHHhCC
Q 001052 1080 LHTKVAQVAASAFNIPLSSVFVSETSTDKVPNASPTAASASSDIYGAAVLDACEQIKARMEPIASKHN 1147 (1172)
Q Consensus 1080 ~~T~~~QIaAe~Lgip~e~V~v~~~dT~~~p~~~~t~~Sr~t~~~g~Av~~A~~~Lr~rL~~~aa~~~ 1147 (1172)
++|.++|++|+.||||.++|++..+||+..+.+++|+|||++.+.+.|+..||++|++++...++.+.
T Consensus 469 ~~t~~~q~~ae~lgip~~~V~v~~gDt~~~~~~~~s~GS~~~~~~~~A~~~a~~~l~~k~~~~aa~~l 536 (731)
T COG1529 469 TDTVLAQIAAEELGIPPDDVEVVHGDTDVPVGGWGSVGSRGTAVAGSAVIDAAAKLAEKDPVAAARML 536 (731)
T ss_pred HHHHHHHHHHHHhCCCHHHEEEEecCCCCCCCCCCCcCcccccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999988887664
No 17
>PF02738 Ald_Xan_dh_C2: Molybdopterin-binding domain of aldehyde dehydrogenase; InterPro: IPR008274 Aldehyde oxidase (1.2.3.1 from EC) catalyses the conversion of an aldehyde in the presence of oxygen and water to an acid and hydrogen peroxide. The enzyme is a homodimer, and requires FAD, molybdenum and two 2FE-2S clusters as cofactors. Xanthine dehydrogenase (1.1.1.204 from EC) catalyses the hydrogenation of xanthine to urate, and also requires FAD, molybdenum and two 2FE-2S clusters as cofactors. This activity is often found in a bifunctional enzyme with xanthine oxidase (1.1.3.22 from EC) activity too. The enzyme can be converted from the dehydrogenase form to the oxidase form irreversibly by proteolysis or reversibly through oxidation of sulphydryl groups.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3NVZ_C 3NVY_C 1FO4_B 3NRZ_L 3AM9_A 3B9J_C 3AX7_B 3NVW_L 3BDJ_A 3ETR_N ....
Probab=100.00 E-value=7.8e-81 Score=763.58 Aligned_cols=400 Identities=34% Similarity=0.479 Sum_probs=342.1
Q ss_pred ccccccCCcccccccCCCcEEEEEEEEECcccccCCCCCeEEEEEecCCCeEEEEeCCCChHHHHHHHHHHhCCCCccEE
Q 001052 747 ERCFRKGDVDICFQSGQCDKIIEGEVRVGGQEHFYLEPHSSVVWTMDHGNEVHMISSTQAPQKHQKYVSHVLGLPMSKVV 826 (1172)
Q Consensus 747 ~~~~~~Gd~e~af~~~~a~~vve~~y~~~~~~H~~mEp~~a~A~~~~~~g~l~V~~stQ~p~~~r~~vA~~Lglp~~kV~ 826 (1172)
...+++||+|++| ++|+++||++|++|+++|++|||++|+|+|+ ++|+|+||++||+|+.+|..||++||||++|||
T Consensus 15 ~~~~~~GDve~af--~~a~~vve~~y~~~~~~h~~mEp~~~~A~~~-~~g~l~v~~~tQ~p~~~r~~va~~lglp~~~V~ 91 (547)
T PF02738_consen 15 ERHIERGDVEAAF--AEADHVVEAEYRTPRQAHAPMEPHGAVAWWD-EDGRLTVWSSTQWPFHVRRAVAEALGLPPEKVR 91 (547)
T ss_dssp EEEEEESSHHHHH--HHTSEEEEEEEEE-BB----SS-SEEEEEEE-TTTEEEEEES-SSHHHHHHHHHHHHTS-GGGEE
T ss_pred ccccccCCHHHHH--hhCCEEEEEEEEECCccccCCCCCeEEEEEc-cCCCEEEEECCcCHhHHHHHHhhhhcCChhHEE
Confidence 4567999999999 9999999999999999999999999999998 688999999999999999999999999999999
Q ss_pred EEeCccCCCCCCCCCcchHHHHHHHHHHHhCCCCEEEEeChhhhhhhcCCCCceEEEEEEeeCCCCcEEEEEEeEEecCC
Q 001052 827 CKTKRIGGGFGGKETRSAFIAAAAAVPSFLLNRPVNLTLDRDIDMMISGQRHSFLGKYKVGFTNEGKVLALDLEIYNNAG 906 (1172)
Q Consensus 827 V~~~~vGGgFG~K~~~~~~~~~~aAlaA~k~gRPVkl~~tR~E~~~~~~~R~~~~~~~k~g~d~dG~i~a~~~~~~~d~G 906 (1172)
|+.+++|||||.|. ....+++.||++|+++||||||+|||+|+|+.+++||++.+++|+|+|+||+|+|++++++.|+|
T Consensus 92 V~~~~~GGgFG~~~-~~~~~~~~aa~~a~~~grPVk~~~tR~e~~~~~~~r~~~~~~~~~g~~~dG~i~a~~~~~~~d~G 170 (547)
T PF02738_consen 92 VISPYVGGGFGKKK-QDSPIAVLAALAAKKTGRPVKLVWTREEDFRAGPKRPPTRIRVRAGADKDGKITALDHDIYADGG 170 (547)
T ss_dssp EEESB-S--TTTTS-STHHHHHHHHHHHHHHSSEEEEE--HHHHHHHS-BB-EEEEEEEEEE-TTS-EEEEEEEEEEEEE
T ss_pred EeeeecCCCCCCcc-ccchHHHHHHHHHhccCceEEEEechHHhcCCCCCccHHHhhhhheECCCCCEEEeeeeeeccCC
Confidence 99999999999333 34677899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHhhccCCCCCCCeEEEEEEEEecCCCCCCccCCCChhhhHHHHHHHHHHHHHHcCCCHHHHHHHhcCC
Q 001052 907 NSLDLSLAVLERAMFHSDNVYEIPNVRIMGNVCFTNFPSNTAFRGFGGPQGMLITENWIQRVAVEVRKSPEEIREINFQG 986 (1172)
Q Consensus 907 a~~~~s~~v~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~RG~G~~q~~fa~Es~mDelA~~lg~DP~e~R~~Nl~~ 986 (1172)
+|.+++..+....+....++|+|||++++++.++||++|.++|||||.+|+.|++|++||++|++|||||+|||++|+.+
T Consensus 171 a~~~~~~~~~~~~~~~~~~~Y~ipn~~~~~~~v~Tn~~~~g~~Rg~G~~q~~fa~E~~~DelA~~lg~DP~e~R~~N~~~ 250 (547)
T PF02738_consen 171 AYASFSPAVAPRAGAGADGPYRIPNVRIDARAVYTNTPPAGAFRGFGAPQAAFALESFMDELAEKLGMDPLEFRLKNLID 250 (547)
T ss_dssp SS-TTHHHHHHHHHHTTTTTB--SEEEEEEEEEE-SSSSBE-STTTTHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHB-G
T ss_pred ccccccccchhhhhcccCCCcccccEEEEEEeccCCCCCCCcCCCCCHHHHHHHHHHHHHHHHHHhCcChHHHHHhcccc
Confidence 99999888888888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccccCCCHHH-HHHHHHhhcChHhhHHHHhhcccCCCcceeeeEEeeeecccccccccccccceEEEEeeCC
Q 001052 987 EGSILHYGQQLQHCTLFP-LWNELKLSCDFLNARKEVDNFNLNNRWKKRGIAMVPTKFGISFTLKLMNQAGALVHVYTDG 1065 (1172)
Q Consensus 987 ~g~~~~~g~~~~~~~l~~-~l~~~~~~~~~~~r~~~~~~~~~~~~~~grGia~~~~~~g~~~~~~~~~~~~a~V~v~~DG 1065 (1172)
+++.+++|..++++++.+ ||+++++.++|.++.++.+.++..+.|++||+++++..++.++.....+.+.+.|+|++||
T Consensus 251 ~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gig~~~~~~~~~~~~~~~~~~~a~v~l~~DG 330 (547)
T PF02738_consen 251 PGDRTPTGQPYDSGDYPEDCLEKAAEHSGWRRRQKEVREFGSGNGWRGRGIGLGCAMYGSGTGGGSGDQSSARVRLNPDG 330 (547)
T ss_dssp TTEB-TTS-BETS--HHHHHHHHHHHHHCHHHHHHHHHHCCHEESSEEEEEEEEEEEEEESTTSGGGSEEEEEEEE-TTS
T ss_pred cccccccCcccccCcHHHHHHHHHHhhhchhhhhhHHhhccccccccccccCCCccccccccccccccCCcEEEEEEeCC
Confidence 999999999999999998 9999999999999998888888888899999999988877766544445678999999999
Q ss_pred eEEEEeCCccCCCChHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCCccCcccchhHHhHHHHHHHHHHHHHHHHHHHHh
Q 001052 1066 TVLVTHGGVEMGQGLHTKVAQVAASAFNIPLSSVFVSETSTDKVPNASPTAASASSDIYGAAVLDACEQIKARMEPIASK 1145 (1172)
Q Consensus 1066 sV~V~~g~~e~GQG~~T~~~QIaAe~Lgip~e~V~v~~~dT~~~p~~~~t~~Sr~t~~~g~Av~~A~~~Lr~rL~~~aa~ 1145 (1172)
+|+|.+|.+|||||++|+++||+||+||||+++|+|..+||+.+|++++|+|||++++.|.|+++||++||++|+++|++
T Consensus 331 ~v~v~~~~~e~GqG~~T~~~qiaAe~Lgi~~~~V~v~~~dT~~~p~~~~t~gSr~t~~~g~Av~~Aa~~lr~~l~~~Aa~ 410 (547)
T PF02738_consen 331 SVTVYTGGVEMGQGSRTALAQIAAEELGIPPEDVRVVSGDTDTTPYDGGTGGSRSTYMSGNAVRKAAEDLREKLLEIAAE 410 (547)
T ss_dssp -EEEEES--BSSSSHHHHHHHHHHHHHTS-GGGEEEEECBTTTS-SB--S-TTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEecccCCcchhhhHHHHHHHHhCCChhhEEEEeCCCcCCCCCCCCccchhhHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 001052 1146 HNFNS 1150 (1172)
Q Consensus 1146 ~~~~~ 1150 (1172)
+++.+
T Consensus 411 ~~~~~ 415 (547)
T PF02738_consen 411 ILGVD 415 (547)
T ss_dssp HTTSS
T ss_pred hcccc
Confidence 87543
No 18
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=100.00 E-value=2.1e-57 Score=511.87 Aligned_cols=280 Identities=25% Similarity=0.377 Sum_probs=262.3
Q ss_pred eEEecCCHHHHHHHHhhCCCcEEEeccCcceeeeeeccccCceEEecCCcccccceeec-CCcEEEcccccHHHHHHHHH
Q 001052 272 KWYRPLKLQHLLELKSKYPDSKLLVGNTEVGIEMRLKRMQYQVLISVTHVPELNVLNVK-DDGLEIGAAVRLTELLKMFR 350 (1172)
Q Consensus 272 ~~~~P~sl~eal~ll~~~~~a~lvaGgTdl~v~~k~~~~~~~~lIdl~~v~EL~~I~~~-~~~l~IGA~vTl~~l~~~l~ 350 (1172)
+|++|+|++||+++|+++++++++||||||+++++++...|+++|||++|+||+.|+.. +++|+|||+||+++++++
T Consensus 6 ~~~~P~sl~Ea~~ll~~~~~a~ivaGGTdl~~~~~~~~~~p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~~l~~~-- 83 (291)
T PRK09971 6 EYHEAATLEEAIELLADNPQAKLIAGGTDVLIQLHHHNDRYRHLVSIHNIAELRGITLAEDGSIRIGAATTFTQIIED-- 83 (291)
T ss_pred ceeCCCCHHHHHHHHHhCCCCEEEeccchHHHHHhCCCCCCCeEEEcCCChhhhCeEecCCCEEEEEeCCcHHHHhcC--
Confidence 89999999999999999999999999999999999999999999999999999999965 567999999999999985
Q ss_pred HhhhcCCCCccchHHHHHHHHHHhccccccccccccccccccCCCCChhHHHHhcCCEEEEEeCCCCeEEEehHhhhccc
Q 001052 351 KVVTERPAHETSSCKAFIEQIKWFAGTQIKNVASVGGNICTASPISDLNPLWMASGAKFHIVDCKGNIRTTMAEEFFLGY 430 (1172)
Q Consensus 351 ~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp~sD~~~~Llal~A~v~l~s~~g~~R~vpl~dF~~g~ 430 (1172)
+.+.. .+|.|.+++++||++||||+||||||||+++|.||++|+|+||||+|+|.+.+| +|++|++|||.|+
T Consensus 84 ~~i~~-------~~p~L~~a~~~ia~~qIRN~aTiGGNi~~a~p~sD~~~~Llal~A~v~i~~~~g-~R~vp~~df~~g~ 155 (291)
T PRK09971 84 PIIQK-------HLPALAEAAVSIGGPQIRNVATIGGNICNGATSADSAPPLFALDAKLEIHSPNG-VRFVPINGFYTGP 155 (291)
T ss_pred hHHHH-------HhHHHHHHHHHhCCHHHhcceecccccccCCcchhHHHHHHHcCCEEEEEcCCC-cEEEEHHHhcCCc
Confidence 44543 688999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ccccCCCCeEEEEEEccCCC-CccceeeeeecccCccccceeeeEEEEEEecCCcceEEEEEEEEEccCCCccccHHHHH
Q 001052 431 RKVDLTSGEILLSIFLPWTR-PFEFVKEFKQAHRRDDDIALVNAGMRVYLEEKDEEWVVSDALLVYGGVAPLSLSAKKTK 509 (1172)
Q Consensus 431 ~~t~L~~~Eil~~I~iP~~~-~~~~~~~~K~~~R~~~dia~v~~A~~~~~~~~~~~~~i~~~ria~Ggv~~~p~ra~~~E 509 (1172)
+++.|+++|||++|+||.+. .+..+.|||+.+|+++|||+||+|+.++++ ++ +|+++||+|||++|+|+|+.++|
T Consensus 156 ~~t~l~~~Eil~~I~iP~~~~~~~~~~~~K~~~R~~~~~a~v~~a~~~~~~-~g---~i~~~ria~G~v~~~p~r~~~~E 231 (291)
T PRK09971 156 GKVSLEHDEILVAFIIPPEPYEHAGGAYIKYAMRDAMDIATIGCAVLCRLD-NG---NFEDLRLAFGVAAPTPIRCQHAE 231 (291)
T ss_pred cccccCCCceEEEEEeCCCCCCCCceEEEEEcccchhhHhHheeEEEEEEc-CC---EEEEEEEEEEcccCceeeHHHHH
Confidence 99999999999999999753 345677899999999999999999999986 45 89999999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHhhccccccCCCCCCCChhHHHHHHHHHHHHHHHHHhhhc
Q 001052 510 TFIVGKSWSQELLQNALKILQTDIILKEDAPGGMVDFRKSLTLSFFFKFFLWVSHQM 566 (1172)
Q Consensus 510 ~~L~Gk~l~~~~l~~a~~~l~~e~~~~~~~~~~saeYR~~la~~L~~r~l~~~~~~~ 566 (1172)
++|.|+.|++++++++.+.+.+++.|.++ .++|++||++|+.+|++|++.++....
T Consensus 232 ~~L~G~~~~~~~~~~a~~~~~~~~~p~~d-~~~s~~YR~~l~~~l~~r~l~~~~~~~ 287 (291)
T PRK09971 232 QTAKGAPLNLETLEAIGELVLQDVAPRSS-WRASKEFRLHLIQELTKRVIKEAVAAA 287 (291)
T ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCCCCC-CCcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999987776 699999999999999999999887543
No 19
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=100.00 E-value=9.6e-55 Score=435.06 Aligned_cols=149 Identities=39% Similarity=0.658 Sum_probs=141.3
Q ss_pred eEEEEEECCEEEEecCCCCCCcHHHHHhhCCCCCcccCccCCCCCceEEEEeccccCCCcccceeecccccchhccCCce
Q 001052 19 KEAILYVNGLRKVLPDGLAHLTLLEYLRDIGLTGTKLGCGEGGCGACTVMVSRYDKKSKKCVHCAVNACLAPLYSLEGMH 98 (1172)
Q Consensus 19 ~~i~~~~Ng~~~~~~~~~p~~~L~~~LR~~~l~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~ 98 (1172)
+.|+|+|||++++++ ++|+++|+||||+.||||||.||++|.|||||||||+ ++|+||++|+.+++|++
T Consensus 7 ~~i~~~vNG~~~~~~-~~~~~~Ll~~LR~~gltgtK~GC~~G~CGACtVlvdg----------~~v~SCl~~a~~~~G~~ 75 (159)
T PRK09908 7 ITIECTINGMPFQLH-AAPGTPLSELLREQGLLSVKQGCCVGECGACTVLVDG----------TAIDSCLYLAAWAEGKE 75 (159)
T ss_pred eeEEEEECCEEEEEe-cCCCCcHHHHHHHcCCCCCCCCcCCCCCCCcEEEECC----------cEeehhHhhHHHhCCCE
Confidence 569999999999996 9999999999999999999999999999999999997 79999999999999999
Q ss_pred EEEeecccCCCCCcCHHHHHHHHhCCCCCCCCchHHHHHHHHHHHhCCC-CCCHHHHHHHhhcCccccCCChhHHHHHHH
Q 001052 99 VITVEGVGNRKHGLHPIQESLVRSHGSQCGFCTPGFIMSMYSLLRSSQT-PPTEEQIEESLAGNLCRCTGYRPIVDAFRV 177 (1172)
Q Consensus 99 i~T~Egl~~~~~~~~~iq~a~~~~~~~qCG~CtpG~vm~~~~ll~~~~~-~~~~~~i~~~l~gnlCRCtgy~~i~~a~~~ 177 (1172)
|+|||||+ ..+.+||||+||+++|++|||||||||||++++||++++. |++++||+++|+|||||||||++|++|++.
T Consensus 76 V~TiEGl~-~~~~l~pvQ~Af~~~~a~QCGyCtPG~ims~~aLl~~~~~~~~s~~eI~~al~GNlCRCTGY~~I~~Av~~ 154 (159)
T PRK09908 76 IRTLEGEA-KGGKLSHVQQAYAKSGAVQCGFCTPGLIMATTAMLAKPREKPLTITEIRRGLAGNLCRCTGYQMIVNTVLD 154 (159)
T ss_pred EEeecCCC-CCCCCCHHHHHHHHcCCCcCCCCCccHHHHHHHHHHcCCCCCCCHHHHHHHHcCCccCCCCCHHHHHHHHH
Confidence 99999998 5678999999999999999999999999999999999863 349999999999999999999999999987
Q ss_pred HH
Q 001052 178 FA 179 (1172)
Q Consensus 178 ~~ 179 (1172)
+-
T Consensus 155 ~~ 156 (159)
T PRK09908 155 CE 156 (159)
T ss_pred Hh
Confidence 64
No 20
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=100.00 E-value=1.1e-53 Score=481.59 Aligned_cols=277 Identities=21% Similarity=0.274 Sum_probs=254.5
Q ss_pred CceEEecCCHHHHHHHHhhCCCcEEEeccCcceeeeeeccccCceEEecCCcccccceeecCCcEEEcccccHHHHHHHH
Q 001052 270 GLKWYRPLKLQHLLELKSKYPDSKLLVGNTEVGIEMRLKRMQYQVLISVTHVPELNVLNVKDDGLEIGAAVRLTELLKMF 349 (1172)
Q Consensus 270 ~~~~~~P~sl~eal~ll~~~~~a~lvaGgTdl~v~~k~~~~~~~~lIdl~~v~EL~~I~~~~~~l~IGA~vTl~~l~~~l 349 (1172)
.|+|++|+||+||+++|++++++++++|||||+++++.+...|+++|||++|+||++|+.++++|+|||+||+++|+++
T Consensus 4 ~f~~~~P~sl~eA~~ll~~~~~a~ivaGGTdl~~~~~~~~~~p~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~~l~~~- 82 (321)
T TIGR03195 4 DFRTLRPASLADAVAALAAHPAARPLAGGTDLLPNLRRGLGQPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAALAED- 82 (321)
T ss_pred CceEECCCCHHHHHHHHhhCCCCEEEEccchHHHHHhcccCCCCeEEECCCChhhccEEecCCEEEEeccCcHHHHhhC-
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHhhhcCCCCccchHHHHHHHHHHhcccccccccccccccc--------------------------------------c
Q 001052 350 RKVVTERPAHETSSCKAFIEQIKWFAGTQIKNVASVGGNIC--------------------------------------T 391 (1172)
Q Consensus 350 ~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~--------------------------------------~ 391 (1172)
+.+++ .+|.|+++++.||++||||+|||||||| +
T Consensus 83 -~~i~~-------~~p~L~~a~~~ias~qIRN~aTiGGNi~~~~~c~~~~~~~~~~~~~~~c~~~~~~~c~~~~~~~~c~ 154 (321)
T TIGR03195 83 -ALVRT-------RWPALAQAARAVAGPTHRAAATLGGNLCLDTRCIYYNQSEWWRSGNGYCLKYRGDKCHVAPKSDRCY 154 (321)
T ss_pred -hhhHh-------HhHHHHHHHHHhCCHHHhCceecHHhhhccCCCcccccccccccccccccccCCccccccCCCcccc
Confidence 55543 6899999999999999999999999999 5
Q ss_pred cCCCCChhHHHHhcCCEEEEEeCCCCeEEEehHhhhccc--ccccCCCCeEEEEEEccCCCCccceeeeeecccCccccc
Q 001052 392 ASPISDLNPLWMASGAKFHIVDCKGNIRTTMAEEFFLGY--RKVDLTSGEILLSIFLPWTRPFEFVKEFKQAHRRDDDIA 469 (1172)
Q Consensus 392 asp~sD~~~~Llal~A~v~l~s~~g~~R~vpl~dF~~g~--~~t~L~~~Eil~~I~iP~~~~~~~~~~~K~~~R~~~dia 469 (1172)
++|.||++|+|+||||+|+|.+.+| +|+||++|||.|+ +++.|+++|||++|+||.+. +..+.|+|+.+|...||+
T Consensus 155 a~p~sD~~~~LlAldA~v~i~~~~g-~R~vpl~dF~~~~g~~~t~L~~~Eiit~I~iP~~~-~~~~~y~k~~~r~a~~~~ 232 (321)
T TIGR03195 155 AAFSGDVAPALLVLDAEAEIVGPAG-VRRVPLAELYVEDGAAHLTLEPGEVLAAVRVPPTG-GWTSAYSKVRVRGAIDFP 232 (321)
T ss_pred CCCchHHHHHHHHcCCEEEEEeCCc-cEEEEHHHHhcccCCccccCCCCCeEEEEEecCCC-CCccEEEEEecCccccce
Confidence 7789999999999999999999999 9999999999954 47999999999999999753 345566788888899999
Q ss_pred eeeeEEEEEEecCCcceEEEEEEEEEccCCCccccHHHHHHHhcCCCCCHHHHHHHHHhhccccccCCCCCCCChhHHHH
Q 001052 470 LVNAGMRVYLEEKDEEWVVSDALLVYGGVAPLSLSAKKTKTFIVGKSWSQELLQNALKILQTDIILKEDAPGGMVDFRKS 549 (1172)
Q Consensus 470 ~v~~A~~~~~~~~~~~~~i~~~ria~Ggv~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~e~~~~~~~~~~saeYR~~ 549 (1172)
++++|+.++.++ + +|+++||+|||++++|+|++++ ++|.|+.|+++++++|.+++.+++.|.++. ++|++||++
T Consensus 233 ~~~vav~l~~~~-~---~i~~~ria~Ggva~~p~r~~~~-e~l~G~~~~~~~~~~a~~~~~~~~~p~~d~-~~s~~YRr~ 306 (321)
T TIGR03195 233 LAGVAVALQRDG-D---RIAGLRVALTGTNSRPLMVPGT-DALAGRPLDDAAAEEIARLVRKTSQPMRTT-LMGVKYRRR 306 (321)
T ss_pred eEEEEEEEEeCC-C---eEEEEEEEEECccCceeehHHH-HHhcCCCCCHHHHHHHHHHHHhhCCCccCC-CCCHHHHHH
Confidence 999999998864 4 8999999999999999999999 558999999999999999999999877664 799999999
Q ss_pred HHHHHHHHHHHHHh
Q 001052 550 LTLSFFFKFFLWVS 563 (1172)
Q Consensus 550 la~~L~~r~l~~~~ 563 (1172)
|+.+|++|++.++.
T Consensus 307 l~~~l~~r~~~~~~ 320 (321)
T TIGR03195 307 VLLAIARRLVDQLW 320 (321)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998764
No 21
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=100.00 E-value=1.3e-54 Score=429.92 Aligned_cols=146 Identities=44% Similarity=0.772 Sum_probs=140.4
Q ss_pred EEEEECCEEEEecCCCCCCcHHHHHhhC-CCCCcccCccCCCCCceEEEEeccccCCCcccceeecccccchhccCCceE
Q 001052 21 AILYVNGLRKVLPDGLAHLTLLEYLRDI-GLTGTKLGCGEGGCGACTVMVSRYDKKSKKCVHCAVNACLAPLYSLEGMHV 99 (1172)
Q Consensus 21 i~~~~Ng~~~~~~~~~p~~~L~~~LR~~-~l~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i 99 (1172)
|+|+|||++++++ ++|+++|++|||+. ||||+|.||++|.||||||+||+ ++|+||++|+.+++|++|
T Consensus 2 i~~~vNG~~~~~~-~~~~~~Ll~~LR~~lgltg~K~gC~~G~CGACtVlvdg----------~~v~SCl~~~~~~~G~~V 70 (148)
T TIGR03193 2 LRLTVNGRWREDA-VADNMLLVDYLRDTVGLTGTKQGCDGGECGACTVLVDG----------RPRLACSTLAHRVAGRKV 70 (148)
T ss_pred EEEEECCEEEEee-cCCCCcHHHHHHHhcCCCCCCCCCCCCCCCCCEEEECC----------eEeeccHhhHhhcCCCcE
Confidence 6899999999986 99999999999996 99999999999999999999997 799999999999999999
Q ss_pred EEeecccCCCCCcCHHHHHHHHhCCCCCCCCchHHHHHHHHHHHhCCCCCCHHHHHHHhhcCccccCCChhHHHHHHHHH
Q 001052 100 ITVEGVGNRKHGLHPIQESLVRSHGSQCGFCTPGFIMSMYSLLRSSQTPPTEEQIEESLAGNLCRCTGYRPIVDAFRVFA 179 (1172)
Q Consensus 100 ~T~Egl~~~~~~~~~iq~a~~~~~~~qCG~CtpG~vm~~~~ll~~~~~~~~~~~i~~~l~gnlCRCtgy~~i~~a~~~~~ 179 (1172)
+|||||+ ..+.+||+|+||+++|++|||||||||||++++||+++|+| +++||+++|+|||||||||++|++|++.++
T Consensus 71 ~TiEgl~-~~~~l~pvq~af~~~~a~QCGfCtPG~vms~~~ll~~~p~p-s~~ei~~al~GnLCRCTGY~~I~~Av~~aa 148 (148)
T TIGR03193 71 ETVEGLA-TNGRLSRLQQAFHERLGTQCGFCTPGMIMAAEALLRRNPSP-SRDEIRAALAGNLCRCTGYVKIIESVEAAA 148 (148)
T ss_pred EEeCCCC-CCCCCCHHHHHHHHcCCCcCCCCCccHHHHHHHHHHcCCCC-CHHHHHHHHcCCccCCCCCHHHHHHHHHhC
Confidence 9999998 56789999999999999999999999999999999999999 999999999999999999999999998763
No 22
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=100.00 E-value=2.8e-53 Score=418.62 Aligned_cols=151 Identities=48% Similarity=0.823 Sum_probs=144.8
Q ss_pred ceEEEEEECCEEEEecCCCCCCcHHHHHhhC-CCCCcccCccCCCCCceEEEEeccccCCCcccceeecccccchhccCC
Q 001052 18 TKEAILYVNGLRKVLPDGLAHLTLLEYLRDI-GLTGTKLGCGEGGCGACTVMVSRYDKKSKKCVHCAVNACLAPLYSLEG 96 (1172)
Q Consensus 18 ~~~i~~~~Ng~~~~~~~~~p~~~L~~~LR~~-~l~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g 96 (1172)
++.|+|+|||++++++ ++|+++|+|+|||. +|||||.||+.|.||||||++|+ ++|+||++|+++++|
T Consensus 1 ~~~i~ltvNG~~~~~~-~~p~~~Ll~~LRd~l~ltgtk~GC~~g~CGACtVlvDG----------~~v~SCl~~a~~~~G 69 (156)
T COG2080 1 KMPITLTVNGEPVELD-VDPRTPLLDVLRDELGLTGTKKGCGHGQCGACTVLVDG----------EAVNSCLTLAVQAEG 69 (156)
T ss_pred CCcEEEEECCeEEEEE-eCCCChHHHHHHHhcCCCCcCCCCCCccCCceEEEECC----------eEehHHHHHHHHhCC
Confidence 3679999999999997 99999999999986 99999999999999999999997 899999999999999
Q ss_pred ceEEEeecccCCCCCcCHHHHHHHHhCCCCCCCCchHHHHHHHHHHHhCCCCCCHHHHHHHhhcCccccCCChhHHHHHH
Q 001052 97 MHVITVEGVGNRKHGLHPIQESLVRSHGSQCGFCTPGFIMSMYSLLRSSQTPPTEEQIEESLAGNLCRCTGYRPIVDAFR 176 (1172)
Q Consensus 97 ~~i~T~Egl~~~~~~~~~iq~a~~~~~~~qCG~CtpG~vm~~~~ll~~~~~~~~~~~i~~~l~gnlCRCtgy~~i~~a~~ 176 (1172)
++|+|||||+.++..|||+|+||+++++.|||||||||||++++||+++|.| |++||+++|+||+||||||..|++|++
T Consensus 70 ~~ItTiEGl~~~~~~l~~vQ~Af~e~~~~QCGyCtpG~Imsa~~lL~~~~~p-s~~eI~~~lsGnlCRCt~Y~~I~~Ai~ 148 (156)
T COG2080 70 AEITTIEGLAKKDGGLHPVQQAFLEHDAFQCGYCTPGQIMSATALLDRNPAP-TDEEIREALSGNLCRCTGYQNIVAAIL 148 (156)
T ss_pred CeEEEeecccCCCCCcCHHHHHHHHcCCCcCCCCcHHHHHHHHHHHHhCCCC-CHHHHHHHHhcCccccCCHHHHHHHHH
Confidence 9999999999555678999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHh
Q 001052 177 VFAK 180 (1172)
Q Consensus 177 ~~~~ 180 (1172)
.++.
T Consensus 149 ~aa~ 152 (156)
T COG2080 149 DAAE 152 (156)
T ss_pred HHHH
Confidence 8874
No 23
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=100.00 E-value=1.9e-52 Score=465.98 Aligned_cols=261 Identities=22% Similarity=0.338 Sum_probs=242.5
Q ss_pred cCCHHHHHHHHhhCCCcEEEeccCcceeeeeec-cccCceEEecCCcccccceeecCCcEEEcccccHHHHHHHHHHhhh
Q 001052 276 PLKLQHLLELKSKYPDSKLLVGNTEVGIEMRLK-RMQYQVLISVTHVPELNVLNVKDDGLEIGAAVRLTELLKMFRKVVT 354 (1172)
Q Consensus 276 P~sl~eal~ll~~~~~a~lvaGgTdl~v~~k~~-~~~~~~lIdl~~v~EL~~I~~~~~~l~IGA~vTl~~l~~~l~~~~~ 354 (1172)
|+||+||+++|+++|+++++|||||+++.++.+ ...|+.+|||++|+||++|+.++++|+|||+|||++|+++ +.+.
T Consensus 1 P~sl~ea~~ll~~~~~a~ivaGgT~l~~~~~~~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~~--~~i~ 78 (264)
T TIGR03199 1 PAALDEAWSLLEKAPDSTFVSGSTLLQLQWEKGTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRKN--PLIK 78 (264)
T ss_pred CCCHHHHHHHHHhCCCCEEEEccChHHHHHhcCcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhhC--hHhH
Confidence 899999999999999999999999999998777 5668999999999999999999999999999999999975 4443
Q ss_pred cCCCCccchHHHHHHHHHHhccccccccccccccccccCCCCChhHHHHhcCCEEEEEeCCCCeEEEehHhhhccccccc
Q 001052 355 ERPAHETSSCKAFIEQIKWFAGTQIKNVASVGGNICTASPISDLNPLWMASGAKFHIVDCKGNIRTTMAEEFFLGYRKVD 434 (1172)
Q Consensus 355 ~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp~sD~~~~Llal~A~v~l~s~~g~~R~vpl~dF~~g~~~t~ 434 (1172)
+.+|.|+++++.||++||||+||+|||||++ .||++|+|+||||+|+|.+ +| +|+||++|||++ ++
T Consensus 79 -------~~~p~L~~a~~~ia~~qIRN~aTlGGNl~~~--~sD~~p~Llal~A~v~i~~-~g-~r~vp~~~f~~~---~~ 144 (264)
T TIGR03199 79 -------RALPCFVDAASAIAAPGVRNRATIGGNIASG--IGDFIPALLVLGAELIVYQ-KE-LIRLPLGAWLSE---ED 144 (264)
T ss_pred -------hHhHHHHHHHHHhcCHHHhcceecHHhccCc--ccchHHHHHHcCCEEEEEe-CC-EEEEEHHHhhhc---cC
Confidence 3689999999999999999999999999998 7999999999999999999 88 999999999984 68
Q ss_pred CCCCeEEEEEEc-cCCCCccceeeeeecccCccccceeeeEEEEEEecCCcceEEEEEEEEEccCCCccccHHHHHHHhc
Q 001052 435 LTSGEILLSIFL-PWTRPFEFVKEFKQAHRRDDDIALVNAGMRVYLEEKDEEWVVSDALLVYGGVAPLSLSAKKTKTFIV 513 (1172)
Q Consensus 435 L~~~Eil~~I~i-P~~~~~~~~~~~K~~~R~~~dia~v~~A~~~~~~~~~~~~~i~~~ria~Ggv~~~p~ra~~~E~~L~ 513 (1172)
|.++|||++|+| |.+..+..++|||+.+|.++++++||+|+.+++++++ +|+++||+|||++++|+|+.++|++|.
T Consensus 145 l~~~Eii~~I~i~p~~~~~~~~~~~k~~~R~~~~~a~v~~a~~~~~~~~~---~i~~~ria~Ggv~~~p~r~~~~E~~L~ 221 (264)
T TIGR03199 145 FKPTAIVTRVIIGPRAETGEFVFYHKVGRRETFTGSLVVVAGRFLLDGSQ---TIKEIRLAVGGADITPRRLLDSEAKLM 221 (264)
T ss_pred CCCCcEEEEEEEECCCCCCCcEEEEEEeccchhHHHHheeeEEEEEcCCC---eEEEEEEEeecCCCceeeHHHHHHHhc
Confidence 999999999999 7665567788999999999999999999999998666 899999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhhccccccCCCCCCCChhHHHHHHHHHHH
Q 001052 514 GKSWSQELLQNALKILQTDIILKEDAPGGMVDFRKSLTLSFFF 556 (1172)
Q Consensus 514 Gk~l~~~~l~~a~~~l~~e~~~~~~~~~~saeYR~~la~~L~~ 556 (1172)
|+.|++++++++.+.+.+++.|.++ +++|++||++|+++|+.
T Consensus 222 G~~~~~~~~~~a~~~~~~~~~p~~d-~~~s~~YR~~l~~~~~~ 263 (264)
T TIGR03199 222 APPWDPHLLAELYKTIIQELPFSSD-PFATAAYRKKVAANVIV 263 (264)
T ss_pred CCCCCHHHHHHHHHHHHhhCCCCCC-CCCCHHHHHHHHHHHhc
Confidence 9999999999999999999987664 69999999999999974
No 24
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=100.00 E-value=9.1e-53 Score=420.76 Aligned_cols=147 Identities=38% Similarity=0.779 Sum_probs=141.1
Q ss_pred EEEEEECCEEEEecCCCCCCcHHHHHhhC-CCCCcccCccCCCCCceEEEEeccccCCCcccceeecccccchhccCCce
Q 001052 20 EAILYVNGLRKVLPDGLAHLTLLEYLRDI-GLTGTKLGCGEGGCGACTVMVSRYDKKSKKCVHCAVNACLAPLYSLEGMH 98 (1172)
Q Consensus 20 ~i~~~~Ng~~~~~~~~~p~~~L~~~LR~~-~l~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~ 98 (1172)
.|+|+|||++++++ ++|+++|++|||+. +|||||.||++|.||||||+||+ ++|+||++|+.+++|++
T Consensus 3 ~i~f~vNG~~~~~~-~~~~~~Ll~~LR~~~~ltgtK~gC~~G~CGACtVlvdG----------~~v~SCl~~~~~~~G~~ 71 (151)
T TIGR03198 3 QFRFTVNGQAWEVA-AVPTTRLSDLLRKELQLTGTKVSCGIGRCGACSVLIDG----------KLANACLTMAYQADGHE 71 (151)
T ss_pred cEEEEECCEEEEee-cCCCcHHHHHHHhccCCCCCCCCCCCCcCCccEEEECC----------cEEechHHHHHHhcCCE
Confidence 48899999999996 89999999999996 99999999999999999999997 68999999999999999
Q ss_pred EEEeecccCCCCCcCHHHHHHHHhCCCCCCCCchHHHHHHHHHHHhCCCCCCHHHHHHHhhcCccccCCChhHHHHHHHH
Q 001052 99 VITVEGVGNRKHGLHPIQESLVRSHGSQCGFCTPGFIMSMYSLLRSSQTPPTEEQIEESLAGNLCRCTGYRPIVDAFRVF 178 (1172)
Q Consensus 99 i~T~Egl~~~~~~~~~iq~a~~~~~~~qCG~CtpG~vm~~~~ll~~~~~~~~~~~i~~~l~gnlCRCtgy~~i~~a~~~~ 178 (1172)
|+|||||+ .+.+||+|+||+++|++|||||||||||++++||+++|.| +++||+++|+|||||||||++|++|++++
T Consensus 72 v~TiEgl~--~~~l~pvQ~af~~~~a~QCGfCtpG~im~~~~ll~~~p~p-~~~ei~~al~gnlCRCtgY~~I~~Av~~~ 148 (151)
T TIGR03198 72 ITTIEGIA--ENELDPCQTAFLEEGGFQCGYCTPGMVVALKALFRETPQP-SDEDMEEGLSGNLCRCTGYGGIIRSACRI 148 (151)
T ss_pred EEecCCcC--CCCCCHHHHHHHHcCCCcCCCCCccHHHHHHHHHHcCCCC-CHHHHHHHHcCCCcCCCCCHHHHHHHHHH
Confidence 99999997 3579999999999999999999999999999999999999 99999999999999999999999999988
Q ss_pred Hh
Q 001052 179 AK 180 (1172)
Q Consensus 179 ~~ 180 (1172)
+.
T Consensus 149 ~~ 150 (151)
T TIGR03198 149 RR 150 (151)
T ss_pred hc
Confidence 73
No 25
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=100.00 E-value=3.1e-51 Score=450.36 Aligned_cols=279 Identities=28% Similarity=0.400 Sum_probs=256.3
Q ss_pred CceEEecCCHHHHHHHHhhCCCcEEEeccCcceeeeeeccccCceEEecCCcccccceeecCCc-EEEcccccHHHHHHH
Q 001052 270 GLKWYRPLKLQHLLELKSKYPDSKLLVGNTEVGIEMRLKRMQYQVLISVTHVPELNVLNVKDDG-LEIGAAVRLTELLKM 348 (1172)
Q Consensus 270 ~~~~~~P~sl~eal~ll~~~~~a~lvaGgTdl~v~~k~~~~~~~~lIdl~~v~EL~~I~~~~~~-l~IGA~vTl~~l~~~ 348 (1172)
.|+|++|+|++||+.++++++++++++|||+|...||.+...|.++|||++|+++..+...+++ |+|||+||+++|.++
T Consensus 3 ~f~y~rp~Sv~eA~~ll~~~~~a~~laGGt~L~~~~k~~~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~ei~~~ 82 (284)
T COG1319 3 NFEYYRPASVEEALNLLARAPDAKYLAGGTDLLPLMKLGIERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLTEIARH 82 (284)
T ss_pred ceEEECCCCHHHHHHHHHhCCCcEEeeCcchHHHHhhcccCCcceEEEecCChhhhceEeecCCEEEEeecccHHHHHhC
Confidence 4799999999999999999999999999999999999999999999999999988888877666 999999999999987
Q ss_pred HHHhhhcCCCCccchHHHHHHHHHHhccccccccccccccccccCCCCChhHHHHhcCCEEEEEeCCCCeEEEehHhhhc
Q 001052 349 FRKVVTERPAHETSSCKAFIEQIKWFAGTQIKNVASVGGNICTASPISDLNPLWMASGAKFHIVDCKGNIRTTMAEEFFL 428 (1172)
Q Consensus 349 l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp~sD~~~~Llal~A~v~l~s~~g~~R~vpl~dF~~ 428 (1172)
+.++. .+|+|++++..+|++||||+||||||||+++|.+|++|+|+||||+|++.+..| +|++|++|||.
T Consensus 83 --~~~~~-------~~p~L~ea~~~ia~~qvRN~aTiGGn~c~a~p~aD~~~aLlaLdA~v~~~~~~g-~r~i~~~~f~~ 152 (284)
T COG1319 83 --PAVRR-------IPPALSEAASAIASPQVRNRATIGGNLCNADPAADLAPALLALDAEVEIRSPGG-ERTIPIEDFFR 152 (284)
T ss_pred --hhhhh-------hchHHHHHHHHhcChhhcceeeecchhccCCCchhhHHHHHHcCCEEEEecCCc-cEEEEHHHhhc
Confidence 55554 678999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred ccccccCCCCeEEEEEEccCCCCccceeeeeecccCccccceeeeEEEEEEecCCcceEEEEEEEEEccCCCccccHHHH
Q 001052 429 GYRKVDLTSGEILLSIFLPWTRPFEFVKEFKQAHRRDDDIALVNAGMRVYLEEKDEEWVVSDALLVYGGVAPLSLSAKKT 508 (1172)
Q Consensus 429 g~~~t~L~~~Eil~~I~iP~~~~~~~~~~~K~~~R~~~dia~v~~A~~~~~~~~~~~~~i~~~ria~Ggv~~~p~ra~~~ 508 (1172)
|+++|.|++|||||+|.||.+..+..+++.|+.+|...+++.|++|..++.+ +|+++||++||++++|+|+.++
T Consensus 153 ~p~~t~l~~gelit~v~lP~~~~~~~~~~kk~r~r~~~~~~~vsvA~~~~~~------~v~~~RvAlgg~a~~p~R~~~~ 226 (284)
T COG1319 153 GPGETALEPGELITAVILPPPPAARGAYYKKVRRRASFAIALVSVAAKLRGD------RVSEARVALGGVAPKPWRLEDA 226 (284)
T ss_pred CccccccCCCcEEEEEEcCCCccCCccEEEEeecchhhhHHHHHHHhhhccc------ceeeeeeeecccCCcceehHHH
Confidence 9999999999999999999983333343445566778899999999988765 5899999999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHhhccccccCCCCCCCChhHHHHHHHHHHHHHHHHHhhh
Q 001052 509 KTFIVGKSWSQELLQNALKILQTDIILKEDAPGGMVDFRKSLTLSFFFKFFLWVSHQ 565 (1172)
Q Consensus 509 E~~L~Gk~l~~~~l~~a~~~l~~e~~~~~~~~~~saeYR~~la~~L~~r~l~~~~~~ 565 (1172)
|+.|.|+++++++++++.+.+.+++.|.+ ++++|++||++|+++++.|.+.++..+
T Consensus 227 E~~L~~~~l~~~~~~~~~~~~~~~~~p~~-d~r~s~~yr~~l~~~~~~ral~~a~~~ 282 (284)
T COG1319 227 EAALLGKPLSLETLEAAAEAAMQEAAPIS-DVRGSAEYRRKLAKVLLARALAEAQGR 282 (284)
T ss_pred HHHhhCCCCChHHHHHHHHHhhcccCCcc-cccchHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999998776 469999999999999999999988764
No 26
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=100.00 E-value=6.9e-51 Score=426.10 Aligned_cols=152 Identities=41% Similarity=0.721 Sum_probs=144.2
Q ss_pred CcceEEEEEECCEEEEecCCCCCCcHHHHHhhC-CCCCcccCccCCCCCceEEEEeccccCCCcccceeecccccchhcc
Q 001052 16 GWTKEAILYVNGLRKVLPDGLAHLTLLEYLRDI-GLTGTKLGCGEGGCGACTVMVSRYDKKSKKCVHCAVNACLAPLYSL 94 (1172)
Q Consensus 16 ~~~~~i~~~~Ng~~~~~~~~~p~~~L~~~LR~~-~l~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~ 94 (1172)
+....|+|+|||++++++ ++|+++|+++||+. +|||+|.||++|.||||||+||+ ++++||++|+.++
T Consensus 47 ~~~~~i~~~VNG~~~~~~-v~~~~tLLd~LR~~l~ltGtK~GC~~G~CGACTVlVdG----------~~v~SCl~la~~~ 115 (217)
T PRK11433 47 PEISPVTLKVNGKTEQLE-VDTRTTLLDALREHLHLTGTKKGCDHGQCGACTVLVNG----------RRLNACLTLAVMH 115 (217)
T ss_pred CcCceEEEEECCEEEEEe-cCCCCcHHHHHHHhcCCCCCCCCCCCCCcCceEEEECC----------EEeeeeeeehhhc
Confidence 446789999999999996 99999999999996 99999999999999999999997 7899999999999
Q ss_pred CCceEEEeecccCCCCCcCHHHHHHHHhCCCCCCCCchHHHHHHHHHHHh---------------CCCCCCHHHHHHHhh
Q 001052 95 EGMHVITVEGVGNRKHGLHPIQESLVRSHGSQCGFCTPGFIMSMYSLLRS---------------SQTPPTEEQIEESLA 159 (1172)
Q Consensus 95 ~g~~i~T~Egl~~~~~~~~~iq~a~~~~~~~qCG~CtpG~vm~~~~ll~~---------------~~~~~~~~~i~~~l~ 159 (1172)
+|++|+|||||+ ..+.|||+|+||+++|++|||||||||||++++||++ +|.| +++||+++|+
T Consensus 116 ~G~~ItTiEGL~-~~~~lhpvQ~Af~~~~a~QCGyCTPG~imsa~alL~~~~~~~~~~~~~~~~~~p~p-t~~eIreals 193 (217)
T PRK11433 116 QGAEITTIEGLG-SPDNLHPMQAAFVKHDGFQCGYCTPGQICSSVAVLKEIKDGIPSHVTVDLTAAPEL-TADEIRERMS 193 (217)
T ss_pred CCCEEEEeCCcC-CCCCCCHHHHHHHHcCCCcCCCCCccHHHHHHHHHHhccccCccccccccccCCCC-CHHHHHHHHc
Confidence 999999999998 5678999999999999999999999999999999998 6678 9999999999
Q ss_pred cCccccCCChhHHHHHHHHHh
Q 001052 160 GNLCRCTGYRPIVDAFRVFAK 180 (1172)
Q Consensus 160 gnlCRCtgy~~i~~a~~~~~~ 180 (1172)
|||||||||++|++|++.++.
T Consensus 194 GNlCRCtgY~~Iv~Av~~~a~ 214 (217)
T PRK11433 194 GNICRCGAYSNILEAIEDVAG 214 (217)
T ss_pred CCccCCCCcHHHHHHHHHHHh
Confidence 999999999999999999874
No 27
>PRK09799 putative oxidoreductase; Provisional
Probab=100.00 E-value=4.6e-48 Score=427.78 Aligned_cols=250 Identities=20% Similarity=0.342 Sum_probs=222.2
Q ss_pred eEEecCCHHHHHHHHhhCC-CcEEEeccCcceeeeeeccccCceEEecCCcccccceeecCCcEEEcccccHHHHHHHHH
Q 001052 272 KWYRPLKLQHLLELKSKYP-DSKLLVGNTEVGIEMRLKRMQYQVLISVTHVPELNVLNVKDDGLEIGAAVRLTELLKMFR 350 (1172)
Q Consensus 272 ~~~~P~sl~eal~ll~~~~-~a~lvaGgTdl~v~~k~~~~~~~~lIdl~~v~EL~~I~~~~~~l~IGA~vTl~~l~~~l~ 350 (1172)
+|++|+||+||+++|++++ +++++||||||++.+ +...++.+|||++| ||++|+.++++|+|||+|||+++.++.
T Consensus 4 ~y~~P~sl~Ea~~ll~~~~~~a~ilAGGT~L~~~~--~~~~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~~~~- 79 (258)
T PRK09799 4 QFFRPDSVEQALELKRRYQDEAVWFAGGSKLNATP--TRTDKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLRDAR- 79 (258)
T ss_pred cEeCCCCHHHHHHHHHhCCCCCEEEecCCChHhhh--CCCCCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHHhCc-
Confidence 7999999999999999995 699999999998864 45567899999999 999999999999999999999998862
Q ss_pred HhhhcCCCCccchHHHHHHHHHHhccccccccccccccccccCCCCChhHHHHhcCCEEEEEeCCCCeEEEehHhhhccc
Q 001052 351 KVVTERPAHETSSCKAFIEQIKWFAGTQIKNVASVGGNICTASPISDLNPLWMASGAKFHIVDCKGNIRTTMAEEFFLGY 430 (1172)
Q Consensus 351 ~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp~sD~~~~Llal~A~v~l~s~~g~~R~vpl~dF~~g~ 430 (1172)
.++ +.|+++++.||++||||+||||||||+++|.||++|+|+||||+|+|.+. |++|++|||.|+
T Consensus 80 -~~~----------~~L~~a~~~vas~qIRN~aTiGGNl~~a~p~sD~~p~LlAldA~v~l~~~----r~vpl~~f~~g~ 144 (258)
T PRK09799 80 -FIP----------AALREALGFVYSRHLRNQSTIGGEIAARQEESVLLPVLLALDAELVFGNG----ETLSIEDYLACP 144 (258)
T ss_pred -ccH----------HHHHHHHHHhCCHHHhccchhHHHhhcCCccHHHHHHHHHcCCEEEEecC----cEEeHHHhcCCC
Confidence 111 37999999999999999999999999999999999999999999999873 799999999984
Q ss_pred ccccCCCCeEEEEEEccCCCCccceeeeeecccCccccceeeeEEEEEEecCCcceEEEEEEEEEccCCCccccHHHHHH
Q 001052 431 RKVDLTSGEILLSIFLPWTRPFEFVKEFKQAHRRDDDIALVNAGMRVYLEEKDEEWVVSDALLVYGGVAPLSLSAKKTKT 510 (1172)
Q Consensus 431 ~~t~L~~~Eil~~I~iP~~~~~~~~~~~K~~~R~~~dia~v~~A~~~~~~~~~~~~~i~~~ria~Ggv~~~p~ra~~~E~ 510 (1172)
++|||++|+||.+. ..+.|||+. |+.+|+|+||+|+.+++++ .+||+|||++++|+|++++|+
T Consensus 145 ------~~Eil~~I~iP~~~--~~~~~~K~~-r~~~~~a~v~~A~~~~~~~--------~~ria~Ggv~~~p~r~~~~E~ 207 (258)
T PRK09799 145 ------CDRLLTEIIIPDPY--RTCATRKIS-RSQAGLTVVTAAVALTDHD--------GMRIALDGVASKPLRLHDVEK 207 (258)
T ss_pred ------CCcEEEEEEcCCCC--CcceEEEec-ccccChhhheeEEEEEEcC--------CeEEEEECCCCcccchHHHhc
Confidence 79999999999764 356778886 8889999999999998752 489999999999999999998
Q ss_pred HhcCCCCCHHHHHHHHHhhccccccCCCCCCCChhHHHHHHHHHHHHHHHHHhhh
Q 001052 511 FIVGKSWSQELLQNALKILQTDIILKEDAPGGMVDFRKSLTLSFFFKFFLWVSHQ 565 (1172)
Q Consensus 511 ~L~Gk~l~~~~l~~a~~~l~~e~~~~~~~~~~saeYR~~la~~L~~r~l~~~~~~ 565 (1172)
+.|+++++.++ +.+++.|.++. ++|++||++++++|+.|+|.++.+.
T Consensus 208 ----~~~~~~~~~~a---~~~~~~p~~d~-~~s~~YR~~~~~~l~~r~l~~~~~~ 254 (258)
T PRK09799 208 ----QNLEGNALEQA---VANAIFPQEDL-RGSVAYKRYIAGVLVADLYADCQQA 254 (258)
T ss_pred ----CCCCHHHHHHH---HHhcCCCCccC-CcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999998876 44777766654 9999999999999999999987763
No 28
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=100.00 E-value=1.5e-47 Score=423.11 Aligned_cols=251 Identities=20% Similarity=0.316 Sum_probs=220.7
Q ss_pred ceEEecCCHHHHHHHHhhCC-CcEEEeccCcceeeeeeccccCceEEecCCcccccceeecCCcEEEcccccHHHHHHHH
Q 001052 271 LKWYRPLKLQHLLELKSKYP-DSKLLVGNTEVGIEMRLKRMQYQVLISVTHVPELNVLNVKDDGLEIGAAVRLTELLKMF 349 (1172)
Q Consensus 271 ~~~~~P~sl~eal~ll~~~~-~a~lvaGgTdl~v~~k~~~~~~~~lIdl~~v~EL~~I~~~~~~l~IGA~vTl~~l~~~l 349 (1172)
.+||+|+|++||+++|++++ +++++||||||++.++ ...++.+|||++| ||++|+.++++|+|||+||+++|+++
T Consensus 2 ~~y~~P~sl~Ea~~ll~~~~~~a~~lAGGTdL~~~~~--~~~~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~~~- 77 (257)
T TIGR03312 2 EQFFRPESTIQALELKKRHTGVAVWFAGGSKLNATPT--RTDKKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLIDN- 77 (257)
T ss_pred CceECCCCHHHHHHHHHhCCCCCEEEecCcchhhhhc--ccCCCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHHhC-
Confidence 37999999999999999995 7999999999987654 4457899999999 99999999999999999999999876
Q ss_pred HHhhhcCCCCccchHHHHHHHHHHhccccccccccccccccccCCCCChhHHHHhcCCEEEEEeCCCCeEEEehHhhhcc
Q 001052 350 RKVVTERPAHETSSCKAFIEQIKWFAGTQIKNVASVGGNICTASPISDLNPLWMASGAKFHIVDCKGNIRTTMAEEFFLG 429 (1172)
Q Consensus 350 ~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp~sD~~~~Llal~A~v~l~s~~g~~R~vpl~dF~~g 429 (1172)
+.++ +.|.++++.||++||||+||||||||+++|.||++|+|+||||+|+|.+. |+||++|||.|
T Consensus 78 -~~~~----------~~L~~aa~~va~~qIRN~gTlGGNl~~a~p~~D~~~~LlaldA~v~l~~~----r~vp~~dF~~g 142 (257)
T TIGR03312 78 -ELTP----------AALKEALGFVYSRHIRNQATIGGEIAAFQSESLLLPVLLALKATVVLANA----SQMDIEDYLAS 142 (257)
T ss_pred -cchH----------HHHHHHHHHhCCHHHhccccHHHHhhcCCCchHHHHHHHHcCCEEEEecC----cEEeHHHhcCC
Confidence 2222 27999999999999999999999999999999999999999999999875 78999999998
Q ss_pred cccccCCCCeEEEEEEccCCCCccceeeeeecccCccccceeeeEEEEEEecCCcceEEEEEEEEEccCCCccccHHHHH
Q 001052 430 YRKVDLTSGEILLSIFLPWTRPFEFVKEFKQAHRRDDDIALVNAGMRVYLEEKDEEWVVSDALLVYGGVAPLSLSAKKTK 509 (1172)
Q Consensus 430 ~~~t~L~~~Eil~~I~iP~~~~~~~~~~~K~~~R~~~dia~v~~A~~~~~~~~~~~~~i~~~ria~Ggv~~~p~ra~~~E 509 (1172)
+ ++|||++|+||.+. ..+.|+|+ +|+..|||+|++|+.++++ + ++||+|||++++|+|+.++|
T Consensus 143 ~------~~Ell~~V~iP~~~--~~~~~~k~-~R~~~~~a~v~~A~~~~~~-~-------~~ria~ggv~~~p~r~~~~E 205 (257)
T TIGR03312 143 E------QRELIVEVIIPNPN--LMCATRNI-SRSAAGLAVVTAAVAVDQK-G-------NMRIALDGVSPVPVRLRDVE 205 (257)
T ss_pred C------CCcEEEEEEcCCCC--CCceEEEe-cCcccchhhheeEEEEEec-C-------CEEEEEEccCCceeehHHHh
Confidence 4 69999999999763 35677788 7999999999999998775 2 37999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHhhccccccCCCCCCCChhHHHHHHHHHHHHHHHHHhhh
Q 001052 510 TFIVGKSWSQELLQNALKILQTDIILKEDAPGGMVDFRKSLTLSFFFKFFLWVSHQ 565 (1172)
Q Consensus 510 ~~L~Gk~l~~~~l~~a~~~l~~e~~~~~~~~~~saeYR~~la~~L~~r~l~~~~~~ 565 (1172)
+. .++++.+.++ +.+++.|.+| .++|++||++|+++|++|++.++.+-
T Consensus 206 ~~----~~~~~~~~~~---~~~~~~p~~D-~r~sa~YRr~~~~~l~~r~l~~~~~~ 253 (257)
T TIGR03312 206 AQ----DLKGEALEQA---VADAIHPVAD-LCGSVAYKRYIAGVVVADLLAECQQL 253 (257)
T ss_pred hC----cCCHHHHHHH---HHhcCCCCCC-CcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 95 5777887654 5577776555 58999999999999999999988763
No 29
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=100.00 E-value=2e-40 Score=345.86 Aligned_cols=170 Identities=40% Similarity=0.669 Sum_probs=151.5
Q ss_pred CceEEecCCHHHHHHHHhhCCCcEEEeccCcceeeeeeccccCceEEecCCcccccceeecCCcEEEcccccHHHHHHHH
Q 001052 270 GLKWYRPLKLQHLLELKSKYPDSKLLVGNTEVGIEMRLKRMQYQVLISVTHVPELNVLNVKDDGLEIGAAVRLTELLKMF 349 (1172)
Q Consensus 270 ~~~~~~P~sl~eal~ll~~~~~a~lvaGgTdl~v~~k~~~~~~~~lIdl~~v~EL~~I~~~~~~l~IGA~vTl~~l~~~l 349 (1172)
.++|++|+|++||+++++.+++++++||||+++++++.+...++.+|||++|+||++|+.++++|+|||+||+++++++
T Consensus 2 ~~~~~~P~sl~ea~~ll~~~~~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~~l~~~- 80 (171)
T PF00941_consen 2 PFEYFRPKSLEEALELLAKGPDARIVAGGTDLGVQMREGILSPDVLIDLSRIPELNGISEDDGGLRIGAAVTLSELEES- 80 (171)
T ss_dssp S-EEEE-SSHHHHHHHHHHGTTEEEESS-TTHHHHHHTTS---SEEEEGTTSGGGG-EEEETSEEEEETTSBHHHHHHH-
T ss_pred CeEEEccCCHHHHHHHHhcCCCCEEEeCCCccchhcccCccccceEEEeEEecccccEEEeccEEEECCCccHHHHhhc-
Confidence 5899999999999999999999999999999999999998899999999999999999999999999999999999998
Q ss_pred HHhhhcCCCCccchHHHHHHHHHHhccccccccccccccccccCCCCChhHHHHhcCCEEEEEeCCCCeEEEehHhhhcc
Q 001052 350 RKVVTERPAHETSSCKAFIEQIKWFAGTQIKNVASVGGNICTASPISDLNPLWMASGAKFHIVDCKGNIRTTMAEEFFLG 429 (1172)
Q Consensus 350 ~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp~sD~~~~Llal~A~v~l~s~~g~~R~vpl~dF~~g 429 (1172)
+.+.+ .++.|++++++||++||||+||||||||+++|.||++|+|+||||+|++.+.+| +|++|++|||.|
T Consensus 81 -~~~~~-------~~p~L~~~~~~ias~~IRn~aTiGGNl~~~~~~sD~~~~Llal~A~v~i~~~~g-~r~~~~~~f~~g 151 (171)
T PF00941_consen 81 -PLIQQ-------YFPALAQAARRIASPQIRNRATIGGNLCNASPASDLAPALLALDARVEIASPDG-TRTVPLEDFFTG 151 (171)
T ss_dssp -HHHHH-------HHHHHHHHHCTSS-HHHHTT-BHHHHHHHTBTT-SHHHHHHHTT-EEEEEETTE-EEEEEGGGGEEC
T ss_pred -chhhh-------hHHHHHHHHHHhCCHhHeeeeeeccccccCcccccHHHHHHHhCcEEEEEcCCe-eEEEEHHHhcCc
Confidence 44443 788999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred cccccCCCCeEEEEEEccCC
Q 001052 430 YRKVDLTSGEILLSIFLPWT 449 (1172)
Q Consensus 430 ~~~t~L~~~Eil~~I~iP~~ 449 (1172)
+++++|++||||++|+||++
T Consensus 152 ~~~~~l~~~eli~~I~iP~~ 171 (171)
T PF00941_consen 152 PRKTDLEPGELITSIRIPKP 171 (171)
T ss_dssp TTEESS-TTEEEEEEEEES-
T ss_pred cccccCCCCcEEEEEECCCC
Confidence 99999999999999999985
No 30
>PF01799 Fer2_2: [2Fe-2S] binding domain; InterPro: IPR002888 The [2Fe-2S] binding domain is found in a range of enzymes including dehydrogenases, oxidases and oxidoreductases. The aldehyde oxido-reductase (Mop) from the sulphate reducing anaerobic Gram-negative bacterium Desulfovibrio gigas is a homodimer of 907 amino acid residues subunits and is a member of the xanthine oxidase family. The protein contains a molybdopterin cofactor (Mo-co) and two different [2Fe-2S] centres. It is folded into four domains of which the first two bind the iron sulphur centres and the last two are involved in Mo-co binding. Mo-co is a molybdenum molybdopterin cytosine dinucleotide. Molybdopterin forms a tricyclic system with the pterin bicycle annealed to a pyran ring. The molybdopterin dinucleotide is deeply buried in the protein. The cis-dithiolene group of the pyran ring binds the molybdenum, which is coordinated by three more (oxygen) ligands [].; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 2E3T_A 1WYG_A 3AN1_B 2E1Q_C 2CKJ_A 3B9J_I 3NVY_J 1FO4_B 3NRZ_J 3AM9_A ....
Probab=99.97 E-value=2.2e-31 Score=235.76 Aligned_cols=75 Identities=61% Similarity=1.136 Sum_probs=64.5
Q ss_pred EeecccCCCCCcCHHHHHHHHhCCCCCCCCchHHHHHHHHHHHhCCCCCCHHHHHHHhhcCccccCCChhHHHHHHH
Q 001052 101 TVEGVGNRKHGLHPIQESLVRSHGSQCGFCTPGFIMSMYSLLRSSQTPPTEEQIEESLAGNLCRCTGYRPIVDAFRV 177 (1172)
Q Consensus 101 T~Egl~~~~~~~~~iq~a~~~~~~~qCG~CtpG~vm~~~~ll~~~~~~~~~~~i~~~l~gnlCRCtgy~~i~~a~~~ 177 (1172)
|||||+ +++.|||||++|+++|++|||||||||||++++||++++.| +++||+++|+|||||||||++|++|++.
T Consensus 1 TvEGl~-~~~~~~~iq~af~~~~a~QCGfCtpG~im~~~~ll~~~~~p-~~~ei~~al~gnlCRCTgY~~I~~Av~~ 75 (75)
T PF01799_consen 1 TVEGLA-SDGELHPIQQAFVEHGAVQCGFCTPGMIMAAYALLRRNPDP-TEEEIREALSGNLCRCTGYRPIVEAVRQ 75 (75)
T ss_dssp -GGGSS-BTTB--HHHHHHHHTT--SSSSSHHHHHHHHHHHHHHSSS--CHHHHHHHTTTS--SSSTSHHHHHHHH-
T ss_pred CcCcCC-CCCCcCHHHHHHHHhCCCcCCcchHHHHHHHHHHhhcccch-hhHHHHHHHHcCccCCCCcHHHHHHHhC
Confidence 899998 78899999999999999999999999999999999999999 9999999999999999999999999973
No 31
>PF01315 Ald_Xan_dh_C: Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain; InterPro: IPR000674 Aldehyde oxidase (1.2.3.1 from EC) catalyses the conversion of an aldehyde in the presence of oxygen and water to an acid and hydrogen peroxide. The enzyme is a homodimer, and requires FAD, molybdenum and two 2FE-2S clusters as cofactors. Xanthine dehydrogenase (1.1.1.204 from EC) catalyses the hydrogenation of xanthine to urate, and also requires FAD, molybdenum and two 2FE-2S clusters as cofactors. This activity is often found in a bifunctional enzyme with xanthine oxidase (1.1.3.22 from EC) activity too. The enzyme can be converted from the dehydrogenase form to the oxidase form irreversibly by proteolysis or reversibly through oxidation of sulphydryl groups.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1N63_E 1N60_B 1ZXI_E 1N5W_E 1N62_B 1N61_E 3AN1_B 2E3T_A 1WYG_A 2W3R_D ....
Probab=99.96 E-value=3.6e-29 Score=242.03 Aligned_cols=107 Identities=50% Similarity=0.674 Sum_probs=92.5
Q ss_pred cceeeccccCCCCCCcEEEEEEecCCCCeEeeccChhhhccCCCEEEEEecCCCCCCCCCCC--CCCC--ccccccCeEE
Q 001052 621 TGEAEYTDDTPMPPNCLHAALVLSRRPHARILSIDDSGARSSPGFVGIFFAEDVQGDNRIGP--VVAD--EELFASEVVT 696 (1172)
Q Consensus 621 tG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~sID~s~A~~~pGVv~Vvt~~Dipg~n~~~~--~~~d--~~~la~~~V~ 696 (1172)
||+++|++|+++ |||||+++||||++||+|++||+++|+++|||++|+|++|+|+.+..+. ...+ +|+|++++|+
T Consensus 1 TG~a~Y~~Di~~-~~~l~~~~vrS~~a~a~I~sid~~~A~~~pGV~~v~t~~Dip~~~~~~~~~~~~~~~~~~la~~~V~ 79 (111)
T PF01315_consen 1 TGEARYVDDIPP-PGMLYAAFVRSPIAHARIKSIDTSEALAMPGVVAVITAEDIPGINPNGGLPIPHDEPQPVLADDKVR 79 (111)
T ss_dssp TT-S-BGGGSCS-TTTEEEEEEE-SSSSEEEEEEEGHHHHHSTTEEEEEEGGGHSSGSEESCSCSTTSSEEESS-SSEES
T ss_pred CcCeEcccccCC-CCCeEEEEEecCcCcEEEEEEecHHHccCCCEEEEEEecccCccccCccccccCCCceEeccCCeEe
Confidence 899999999998 7999999999999999999999999999999999999999998876653 3444 4799999999
Q ss_pred ecCCeEEEEEECCHHHHHHhcccCeeEEecCC
Q 001052 697 CVGQVIGVVVAETHEEAKLASRKVQVEYEELP 728 (1172)
Q Consensus 697 y~GqpVa~VvAet~~~A~~Aa~~V~V~ye~lp 728 (1172)
|+|||||+|||+|+++|++|+++|+|+||+||
T Consensus 80 y~GqpVa~VvAet~~~A~~Aa~~V~V~Ye~lp 111 (111)
T PF01315_consen 80 YVGQPVALVVAETREAARDAAELVKVEYEELP 111 (111)
T ss_dssp STT-EEEEEEESSHHHHHHHHHT-EEEEEE--
T ss_pred ECCCeEEEEEECCHHHHHHHhcCcEEEeEeCC
Confidence 99999999999999999999999999999986
No 32
>PF03450 CO_deh_flav_C: CO dehydrogenase flavoprotein C-terminal domain; InterPro: IPR005107 Proteins containing this domain form structural complexes with other known families, such as IPR008274 from INTERPRO and IPR001041 from INTERPRO]. The carbon monoxide (CO) dehydrogenase of Oligotropha carboxidovorans is a heterotrimeric complex composed of a apoflavoprotein, a molybdoprotein, and an iron-sulphur protein. It can be dissociated with sodium dodecylsulphate []. CO dehydrogenase catalyzes the oxidation of CO according to the following equation []: CO + H2O = CO2 + 2e + 2H+ Subunit S represents the iron-sulphur protein of CO dehydrogenase and is clearly divided into a C- and an N-terminal domain, each binding a [2Fe-2S] cluster [].; PDB: 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B 3UNI_A 3AMZ_A ....
Probab=99.75 E-value=8.5e-18 Score=161.15 Aligned_cols=102 Identities=26% Similarity=0.432 Sum_probs=96.0
Q ss_pred eeeecccCccccceeeeEEEEEEecCCcceEEEEEEEEEccCCCccccHHHHHHHhcCCCCCHHHHHHHHHhhccccccC
Q 001052 457 EFKQAHRRDDDIALVNAGMRVYLEEKDEEWVVSDALLVYGGVAPLSLSAKKTKTFIVGKSWSQELLQNALKILQTDIILK 536 (1172)
Q Consensus 457 ~~K~~~R~~~dia~v~~A~~~~~~~~~~~~~i~~~ria~Ggv~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l~~e~~~~ 536 (1172)
+||+.+|+++|||++|+|+.+.+++++ +|+++||++||++++|+|++++|++|.|++|++++++++.+.+.+++.|.
T Consensus 2 ayk~~~R~~~d~a~v~~a~~~~~~~~~---~i~~~ria~g~v~~~p~r~~~~E~~L~g~~~~~~~~~~~~~~~~~~~~~~ 78 (103)
T PF03450_consen 2 AYKIGRRKANDIAIVNVAVLVSVDDDG---RIEDARIAVGGVAPTPVRAEEVEAALIGKPLSEETLEEAAEAVSEEIDPI 78 (103)
T ss_dssp EEEESSSSSSSSSSEEEEEEEEEETTS---EEEEEEEEEESSSSSTEE-HHHHHHTTTSBSSHHHHHHHHHHHHHHTHHC
T ss_pred CeeccCccccHHHHHhhhheEEEecCc---eEEEEEEEEeccccceeehHHHHHHHhhcchhhhhHHHHHHHHHhcCCCC
Confidence 459999999999999999999999887 89999999999999999999999999999999999999999999999877
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHH
Q 001052 537 EDAPGGMVDFRKSLTLSFFFKFFLWV 562 (1172)
Q Consensus 537 ~~~~~~saeYR~~la~~L~~r~l~~~ 562 (1172)
++ .++|++||++|+.+|++|+|.++
T Consensus 79 ~d-~r~s~~YR~~l~~~l~~ral~~~ 103 (103)
T PF03450_consen 79 SD-MRASAEYRRHLARVLVRRALEEV 103 (103)
T ss_dssp TT-TTBTHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CCCCHHHHHHHHHHHHHHHHHhC
Confidence 77 68999999999999999999874
No 33
>COG1529 CoxL Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]
Probab=99.64 E-value=2e-17 Score=208.29 Aligned_cols=472 Identities=16% Similarity=0.103 Sum_probs=291.5
Q ss_pred cCCCCccC-CcccccCccccccceeeccccCCCCCCcEEEEEEecCCCCeEeeccChhhhccCCCEEEEEecCCCCCCCC
Q 001052 601 TKHGTSVG-SPEVHLSSRLQVTGEAEYTDDTPMPPNCLHAALVLSRRPHARILSIDDSGARSSPGFVGIFFAEDVQGDNR 679 (1172)
Q Consensus 601 ~~~~~~vG-~~~~r~d~~~kvtG~a~Y~~Di~~~~gmL~a~~vrSp~a~a~I~sID~s~A~~~pGVv~Vvt~~Dipg~n~ 679 (1172)
+....++| ...++ |+. ++|+.+.|..|..+ ++||+..+.+++..-..|.. |...+...++++.+...
T Consensus 179 ~~~~E~~g~~a~~~-d~~-~lt~~~~tQ~~~~~-~~~l~~~l~~p~~~vrvi~~-dvGggfG~K~~~~~~~~-------- 246 (731)
T COG1529 179 PNPMEPHGVVAVPD-DGD-KLTVWASTQIPHRL-RGMLAAVLGIPPSKVRVISP-DVGGGFGSKGVVYVEEI-------- 246 (731)
T ss_pred ccCcccccceeeEc-CCC-eEEEEEccCCchHH-HHHHHHHhCCCHHHeEEecC-CCCcccCCcccceeHHH--------
Confidence 35667888 67788 777 99999999999999 79999999955544444444 88888887776544322
Q ss_pred CCCCCCCccccccCeEEecCCeEEEEEECCHHHHHHhcccCeeEEecCC-ccCCHHHHhhc-CCCCCC-CccccccCC--
Q 001052 680 IGPVVADEELFASEVVTCVGQVIGVVVAETHEEAKLASRKVQVEYEELP-AILSIQEAIDA-KSFHPN-TERCFRKGD-- 754 (1172)
Q Consensus 680 ~~~~~~d~~~la~~~V~y~GqpVa~VvAet~~~A~~Aa~~V~V~ye~lp-~v~~~~~A~~~-~a~~~~-~~~~~~~Gd-- 754 (1172)
.+-.-..-.|-||.+ ....+...+.....+ ...+..-+... +.+..- .......|+
T Consensus 247 ----------~~~~aa~~~grpVk~---------~~tR~e~~~~~~~~~~~~~~~~~~a~~dg~l~~~~~~~~~~~Gay~ 307 (731)
T COG1529 247 ----------LAALAAVVAGRPVKW---------IETREELFVATGHRRATLIDVKLGADKDGRLLAIKGTVAADTGAYN 307 (731)
T ss_pred ----------HHHHHHHhcCCCeEE---------ecchHHhhhccCCCCCceEEeeeecCcCCcEEeeeeeEEecCCCcc
Confidence 110111112334432 222222222211111 11111111111 111000 011122333
Q ss_pred ---cccccc-cCCCcEEEEEEEEECcccccCCCCCeEEEEEecCCCeEEEEeCCCChHHHHHHHHHHhCCCCccEEEEeC
Q 001052 755 ---VDICFQ-SGQCDKIIEGEVRVGGQEHFYLEPHSSVVWTMDHGNEVHMISSTQAPQKHQKYVSHVLGLPMSKVVCKTK 830 (1172)
Q Consensus 755 ---~e~af~-~~~a~~vve~~y~~~~~~H~~mEp~~a~A~~~~~~g~l~V~~stQ~p~~~r~~vA~~Lglp~~kV~V~~~ 830 (1172)
+.+++. .....+.++..|..++..|..||| ++..+.. ++. .+||.+...++.+|+.|||++.+||++..
T Consensus 308 ~~~~~~~~~~~~~g~Y~i~~~~~~~~~v~tn~~p-~~~~Rg~--g~~----~~~~a~E~~~d~lA~~Lgidp~eiR~~n~ 380 (731)
T COG1529 308 GPTVPAAAAGLARGPYKIEAVYIEPYLVHTNMPP-NGAYRGA--GRP----EGTFALERAVDELAEELGIDPVEIRLRNL 380 (731)
T ss_pred ccchhHHHHHhcCCceecccceeeeEEEEcCCCC-CcccccC--CCc----hhHHHHHHHHHHHHHHhCCCHHHHhhhhc
Confidence 222220 134457999999999999999999 6666653 222 88999999999999999999999999999
Q ss_pred ccCCCCC-CCCCcchHHHHHHHHHHHhCC---CCEEEEeChhhhhhhcCCCCceEEEE--------EEeeCCCCcEEEEE
Q 001052 831 RIGGGFG-GKETRSAFIAAAAAVPSFLLN---RPVNLTLDRDIDMMISGQRHSFLGKY--------KVGFTNEGKVLALD 898 (1172)
Q Consensus 831 ~vGGgFG-~K~~~~~~~~~~aAlaA~k~g---RPVkl~~tR~E~~~~~~~R~~~~~~~--------k~g~d~dG~i~a~~ 898 (1172)
..+|+|| ++-.....+...+..++++++ ||+|..|+|+++++....+.-..... ++-++.||++....
T Consensus 381 ~~~g~~~~~~~~~~~~~~~~~~~~ak~~~~~~~~~k~~~~re~~~~~G~g~a~~~~~~~~~~~~~a~v~~~~~g~v~v~~ 460 (731)
T COG1529 381 IRGGPFGLGRRYDSGDYLEELDEAAKRFGWSERPVKPIWTREGDLRRGVGRAMYTEPSGAGPGEGARVRLEADGTVTVRT 460 (731)
T ss_pred cccCCCCCcccccCccHHHHHHHHHHhcCcccccCChhhhhcCCeeeeeEEEEEEEeccCCCCCcEEEEEcCCCcEEEEE
Confidence 9999999 554444566667778888887 99999999999988765555444333 33444566665544
Q ss_pred EeEEecCCCCCCchHHHHHHHhhccCCCCCCCeEEEEEEEEecCCCCCCccCCCChhhhHHHHHHHHHHHHHHcCCCHHH
Q 001052 899 LEIYNNAGNSLDLSLAVLERAMFHSDNVYEIPNVRIMGNVCFTNFPSNTAFRGFGGPQGMLITENWIQRVAVEVRKSPEE 978 (1172)
Q Consensus 899 ~~~~~d~Ga~~~~s~~v~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~RG~G~~q~~fa~Es~mDelA~~lg~DP~e 978 (1172)
-.. +.|-- ...++.+ .....|.||+-+++.....|..++ .+||.+|+..+.|+.|.+++++++..+.||..
T Consensus 461 g~~--~~G~G---~~t~~~q---~~ae~lgip~~~V~v~~gDt~~~~-~~~~s~GS~~~~~~~~A~~~a~~~l~~k~~~~ 531 (731)
T COG1529 461 GAT--DIGQG---TDTVLAQ---IAAEELGIPPDDVEVVHGDTDVPV-GGWGSVGSRGTAVAGSAVIDAAAKLAEKDPVA 531 (731)
T ss_pred CCc--cCCCc---HHHHHHH---HHHHHhCCCHHHEEEEecCCCCCC-CCCCCcCcccccchHHHHHHHHHHHHHHHHHH
Confidence 332 22211 1112222 235679999999999889998876 78999999999999999999999999999999
Q ss_pred HHHHhcCCCCCcccccccccCCCHHHHHHHHHhhcChHhh-----HHHHhhcccCCCcceeeeEEeeeeccccccccccc
Q 001052 979 IREINFQGEGSILHYGQQLQHCTLFPLWNELKLSCDFLNA-----RKEVDNFNLNNRWKKRGIAMVPTKFGISFTLKLMN 1053 (1172)
Q Consensus 979 ~R~~Nl~~~g~~~~~g~~~~~~~l~~~l~~~~~~~~~~~r-----~~~~~~~~~~~~~~grGia~~~~~~g~~~~~~~~~ 1053 (1172)
+|+..-....+ -.|+.......|..+ ..+.. ++-+.+|+++.. .|+..... ...
T Consensus 532 aa~~l~~~~~~--------------~~~~~g~~~~~~~~~~~~~~~~~~a-----~~~~~~~~~~~~-~~~~~~~~-~~~ 590 (731)
T COG1529 532 AARMLGADAED--------------VVLEDGAFKVGGGDRRSAVSLKEVA-----GKGLAPGLAVAA-SFGSDNTY-PYG 590 (731)
T ss_pred HHhhhCCChhH--------------eeeccCeeeeccCCccceeeHHHhh-----hccccCcccccc-cccccccc-cce
Confidence 99886222111 134445555555432 11111 111346666652 22221000 011
Q ss_pred ccceEEEEe-eCCeEEEE--eCCccCCCC-------------hHHHHHHHHHHHh----------------------CCC
Q 001052 1054 QAGALVHVY-TDGTVLVT--HGGVEMGQG-------------LHTKVAQVAASAF----------------------NIP 1095 (1172)
Q Consensus 1054 ~~~a~V~v~-~DGsV~V~--~g~~e~GQG-------------~~T~~~QIaAe~L----------------------gip 1095 (1172)
...++|+|+ .+|+|.|. ....|.|.= +--.+.|..-|+. ++|
T Consensus 591 A~~~EV~Vd~~tG~vrV~r~~~~~D~G~vvNP~~~~~Qv~GGi~~Gig~aL~E~~i~d~~g~~~~~n~~dY~ip~~~d~P 670 (731)
T COG1529 591 AHIAEVEVDPETGEVRVLRVVAVDDCGRVVNPKLAEGQVEGGILMGIGMALYEEAIYDEDGQLLNSNLADYGIPRAADAP 670 (731)
T ss_pred eEEEEEEEECCCCcEEEEEEEEEEecCCccCHHHHHHHHHhHHHHHHHHHhhccceECCCCCcCCCCcccccCCCcccCC
Confidence 235899999 58999886 345555532 2222233333311 456
Q ss_pred CCcEEEEeCCCCCCCCCccCcccchhHHhHHHHHHHHHHH-HHHHH
Q 001052 1096 LSSVFVSETSTDKVPNASPTAASASSDIYGAAVLDACEQI-KARME 1140 (1172)
Q Consensus 1096 ~e~V~v~~~dT~~~p~~~~t~~Sr~t~~~g~Av~~A~~~L-r~rL~ 1140 (1172)
.-.|++++......|.+....|=-++.-...||.+|...+ .+|+.
T Consensus 671 ~iev~~v~~p~~~~p~g~kGvGE~g~~~~~pAvaNAV~~AtGkri~ 716 (731)
T COG1529 671 EVEVEFVESPSPFGPLGAKGVGEGGIIGIAPAIANAVFDATGKRIR 716 (731)
T ss_pred ceEEEEecCCCCCCCCCCCCcCcCccCchhHHHHHHHHHHhCCccc
Confidence 6566666644333466666666777777889999998876 45554
No 34
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=99.01 E-value=5.2e-10 Score=123.13 Aligned_cols=69 Identities=13% Similarity=0.326 Sum_probs=63.2
Q ss_pred EEEEecCCCCCCcHHHHHhhCCC-----CCcccCccCCCCCceEEEEeccccCCCcccceeecccccchhccCCceEEEe
Q 001052 28 LRKVLPDGLAHLTLLEYLRDIGL-----TGTKLGCGEGGCGACTVMVSRYDKKSKKCVHCAVNACLAPLYSLEGMHVITV 102 (1172)
Q Consensus 28 ~~~~~~~~~p~~~L~~~LR~~~l-----~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~T~ 102 (1172)
+.++++ +++++|||++||+.+. .++|.||++|.||+|+|+||| ++++||.+++..++|.+++||
T Consensus 20 q~y~v~-~~~~~tvLd~L~~i~~~~d~~l~~r~~C~~g~CGsCa~~InG----------~p~laC~t~~~~~~~~~~iti 88 (251)
T PRK12386 20 QDYTVE-VNEGEVVLDVIHRLQATQAPDLAVRWNCKAGKCGSCSAEING----------RPRLMCMTRMSTFDEDETVTV 88 (251)
T ss_pred EEEEEe-CCCCCCHHHHHHHhccccCCCCcccCCCCCCcCCCCEEEECc----------cEeccHHhHHHHhCCCCeEEE
Confidence 567775 8899999999999776 599999999999999999997 899999999999999999999
Q ss_pred ecccC
Q 001052 103 EGVGN 107 (1172)
Q Consensus 103 Egl~~ 107 (1172)
|+|.+
T Consensus 89 epl~~ 93 (251)
T PRK12386 89 TPMRT 93 (251)
T ss_pred ccCCC
Confidence 99974
No 35
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=98.49 E-value=1.3e-07 Score=104.24 Aligned_cols=68 Identities=19% Similarity=0.238 Sum_probs=58.9
Q ss_pred EEEEecCCC-CCCcHHHHHhhC-----CCCCcccCccCCCCCceEEEEeccccCCCcccceeecccccchhccCCceEEE
Q 001052 28 LRKVLPDGL-AHLTLLEYLRDI-----GLTGTKLGCGEGGCGACTVMVSRYDKKSKKCVHCAVNACLAPLYSLEGMHVIT 101 (1172)
Q Consensus 28 ~~~~~~~~~-p~~~L~~~LR~~-----~l~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~T 101 (1172)
+.++++ ++ +++|||++||+. +..+.+.||++|.||+|+|.||| +++.||.+++..+ |.+++|
T Consensus 18 ~~~~v~-~~~~~~tvl~~L~~~~~~~~~~l~~~~~c~~g~Cg~C~v~vnG----------~~~laC~t~~~~~-~~~~~t 85 (232)
T PRK05950 18 QTYEVD-VDECGPMVLDALIKIKNEIDPTLTFRRSCREGVCGSDAMNING----------KNGLACITPISDL-KKGKIV 85 (232)
T ss_pred EEEEeC-CCCCCCHHHHHHHHhCCccCCcceeeCCCCCCCCCCCEEEECC----------cCccchhChHhHc-CCCeEE
Confidence 345564 77 999999999974 47888999999999999999997 6788999999999 668999
Q ss_pred eecccC
Q 001052 102 VEGVGN 107 (1172)
Q Consensus 102 ~Egl~~ 107 (1172)
||+|.+
T Consensus 86 iepl~~ 91 (232)
T PRK05950 86 IRPLPG 91 (232)
T ss_pred EEECCC
Confidence 999974
No 36
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=98.32 E-value=1.3e-06 Score=98.59 Aligned_cols=69 Identities=20% Similarity=0.256 Sum_probs=58.0
Q ss_pred EEEEecCCCCCCcHHHHHhhC--CC---CCcccCccCCCCCceEEEEeccccCCCcccceeecccccchhcc--CCceEE
Q 001052 28 LRKVLPDGLAHLTLLEYLRDI--GL---TGTKLGCGEGGCGACTVMVSRYDKKSKKCVHCAVNACLAPLYSL--EGMHVI 100 (1172)
Q Consensus 28 ~~~~~~~~~p~~~L~~~LR~~--~l---~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~--~g~~i~ 100 (1172)
+.++++ +++++|||++|+.. .+ -+.+.+|.+|.||+|+|.||| +++.||.+++..+ ++.+++
T Consensus 25 ~~~~v~-~~~~~tvLd~L~~i~~~~d~tl~~~~~C~~G~CgsC~v~ING----------~~~laC~t~v~~~~~~~~~~~ 93 (279)
T PRK12576 25 QEYKVK-VDRFTQVTEALRRIKEEQDPTLSYRASCHMAVCGSCGMKING----------EPRLACKTLVLDVAKKYNSVI 93 (279)
T ss_pred EEEEEe-cCCCCHHHHHHHHhCCccCCCceecCCCCCCCCCCCEEEECC----------cEeccccCcHHHhhcCCCCcE
Confidence 456665 88999999999973 22 256999999999999999997 6789999999998 467789
Q ss_pred EeecccC
Q 001052 101 TVEGVGN 107 (1172)
Q Consensus 101 T~Egl~~ 107 (1172)
|||+|.+
T Consensus 94 tiePl~~ 100 (279)
T PRK12576 94 TIEPMDY 100 (279)
T ss_pred EEEECCC
Confidence 9999974
No 37
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=98.29 E-value=6.1e-07 Score=98.10 Aligned_cols=68 Identities=28% Similarity=0.444 Sum_probs=59.2
Q ss_pred EEEEecCCCCCCcHHHHHhhC-----CCCCcccCccCCCCCceEEEEeccccCCCcccceeecccccchhccCCceEEEe
Q 001052 28 LRKVLPDGLAHLTLLEYLRDI-----GLTGTKLGCGEGGCGACTVMVSRYDKKSKKCVHCAVNACLAPLYSLEGMHVITV 102 (1172)
Q Consensus 28 ~~~~~~~~~p~~~L~~~LR~~-----~l~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~T~ 102 (1172)
+.++++ +++++|||+.|++. ...+.+.+|+.|.||+|+|.||| +++.||.+++..+ |.+++||
T Consensus 15 ~~~~v~-~~~~~tvl~~l~~i~~~~~~~l~~~~~C~~g~Cg~C~v~vnG----------~~~laC~t~v~~~-g~~~~~i 82 (220)
T TIGR00384 15 QSYEVP-ADEGMTVLDALNYIKDEQDPSLAFRRSCRNGICGSCAMNVNG----------KPVLACKTKVEDL-GQPVMKI 82 (220)
T ss_pred EEEEEe-CCCCCcHHHHHHHHHHhcCCCceeecccCCCCCCCCeeEECC----------EEhhhhhChHHHc-CCCcEEE
Confidence 456665 78999999999962 56778999999999999999996 6788999999988 8999999
Q ss_pred ecccC
Q 001052 103 EGVGN 107 (1172)
Q Consensus 103 Egl~~ 107 (1172)
|+|.+
T Consensus 83 epl~~ 87 (220)
T TIGR00384 83 EPLPN 87 (220)
T ss_pred eeCCC
Confidence 99973
No 38
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.22 E-value=2.8e-06 Score=77.98 Aligned_cols=69 Identities=32% Similarity=0.438 Sum_probs=48.4
Q ss_pred eEEEEEECCEEEEecCCCCCCcHHHHHhhCCCC-----Cc----ccCccCCCCCceEEEEeccccCCCccccee-ecccc
Q 001052 19 KEAILYVNGLRKVLPDGLAHLTLLEYLRDIGLT-----GT----KLGCGEGGCGACTVMVSRYDKKSKKCVHCA-VNACL 88 (1172)
Q Consensus 19 ~~i~~~~Ng~~~~~~~~~p~~~L~~~LR~~~l~-----g~----k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~-v~sCl 88 (1172)
..|+|+|||+++++. ++.||++.|+..|+. .. ..-|..|.|+.|.|.+++ ++ +.||.
T Consensus 2 ~~v~i~idG~~v~~~---~G~til~al~~~gi~ip~~c~~~~~r~~~~~~g~C~~C~Vev~g----------~~~v~AC~ 68 (82)
T PF13510_consen 2 KMVTITIDGKPVEVP---PGETILEALLAAGIDIPRLCYHGRPRGGLCPIGSCRLCLVEVDG----------EPNVRACS 68 (82)
T ss_dssp EEEEEEETTEEEEEE---ET-BHHHHHHHTT--B-EETTTS-EEBSSSSSTT-SS-EEEESS----------EEEEETTT
T ss_pred CEEEEEECCEEEEEc---CCCHHHHHHHHCCCeEEEeeeccCcccccCCccccceEEEEECC----------CcceEccc
Confidence 479999999998764 899999999975433 22 333778999999999986 33 89999
Q ss_pred cchhccCCceEEEe
Q 001052 89 APLYSLEGMHVITV 102 (1172)
Q Consensus 89 ~~~~~~~g~~i~T~ 102 (1172)
+|+. +|..|.|-
T Consensus 69 t~v~--~GM~V~T~ 80 (82)
T PF13510_consen 69 TPVE--DGMVVETQ 80 (82)
T ss_dssp -B----TTEEEE--
T ss_pred CCCc--CCcEEEEe
Confidence 9975 89999874
No 39
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=97.98 E-value=1.1e-05 Score=73.99 Aligned_cols=69 Identities=25% Similarity=0.384 Sum_probs=52.0
Q ss_pred EEEEECCEEEEecCCCCCCcHHHHHhhCCCCCcccCccCCCCCceEEEEeccccCC--------Ccccceeecccccch
Q 001052 21 AILYVNGLRKVLPDGLAHLTLLEYLRDIGLTGTKLGCGEGGCGACTVMVSRYDKKS--------KKCVHCAVNACLAPL 91 (1172)
Q Consensus 21 i~~~~Ng~~~~~~~~~p~~~L~~~LR~~~l~g~k~gC~~G~CGaCtV~~~~~~~~~--------~~~~~~~v~sCl~~~ 91 (1172)
+.|+.||...+++ ++++++|+++|++.|+. ...+|+.|.||+|.|.|..-+... .......+.+|.+.+
T Consensus 1 v~~~~~~~~~~~~-~~~g~~ll~al~~~g~~-~~~~C~~g~Cg~C~v~v~~G~~~~~~~~~~~~~~~~~~~~LaC~~~~ 77 (84)
T cd00207 1 VTINVPGSGVEVE-VPEGETLLDAAREAGID-IPYSCRAGACGTCKVEVVEGEVDQSDPSLLDEEEAEGGYVLACQTRV 77 (84)
T ss_pred CEEecCCCCEEEE-ECCCCcHHHHHHHcCCC-cccCCCCcCCcCCEEEEeeCccccCcccCCCHHHHhCCeEEEEeCee
Confidence 4688887777775 88999999999998887 889999999999999997411110 011234678888876
No 40
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.98 E-value=1.9e-05 Score=99.86 Aligned_cols=93 Identities=27% Similarity=0.415 Sum_probs=68.6
Q ss_pred eEEEEEECCEEEEecCCCCCCcHHHHHhhCCCCCcccCc------cCCCCCceEEEEeccccCCCcccceeecccccchh
Q 001052 19 KEAILYVNGLRKVLPDGLAHLTLLEYLRDIGLTGTKLGC------GEGGCGACTVMVSRYDKKSKKCVHCAVNACLAPLY 92 (1172)
Q Consensus 19 ~~i~~~~Ng~~~~~~~~~p~~~L~~~LR~~~l~g~k~gC------~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~ 92 (1172)
+.++|+|||+++++ .+++||++.|+..|+.-.+ .| ..|.|+.|.|.+++.. +.+.||.+++.
T Consensus 2 ~~v~~~idg~~~~~---~~g~ti~~a~~~~g~~ip~-~c~~~~~~~~g~C~~C~V~v~g~~--------~~~~aC~t~~~ 69 (652)
T PRK12814 2 NTISLTINGRSVTA---APGTSILEAAASAGITIPT-LCFHQELEATGSCWMCIVEIKGKN--------RFVPACSTAVS 69 (652)
T ss_pred CeEEEEECCEEEEe---CCcCcHHHHHHHcCCcccc-ccCCCCCCCccccceeEEEECCCc--------ceecCcCCCCC
Confidence 46899999998875 5899999999987765333 44 4799999999998621 35899999984
Q ss_pred ccCCceEEEeecccCCCCCcCHHHHHHHHhCCCC-CCCCc
Q 001052 93 SLEGMHVITVEGVGNRKHGLHPIQESLVRSHGSQ-CGFCT 131 (1172)
Q Consensus 93 ~~~g~~i~T~Egl~~~~~~~~~iq~a~~~~~~~q-CG~Ct 131 (1172)
+|..|.| . ...+..+|+...+.-.++ |++|.
T Consensus 70 --~Gm~v~t----~--~~~~~~~r~~~le~l~~~~c~~C~ 101 (652)
T PRK12814 70 --EGMVIET----E--NAELHAMRRQSLERLIEQHCGDCL 101 (652)
T ss_pred --CCCEEEe----C--cHHHHHHHHHHHHHHHhhcccccC
Confidence 8999999 2 345666664444433333 78875
No 41
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=97.91 E-value=1.6e-05 Score=101.28 Aligned_cols=96 Identities=22% Similarity=0.330 Sum_probs=77.1
Q ss_pred EEEEECCEEEEecCCCCCCcHHHHHhhCCCCCcc----cCcc-CCCCCceEEEEeccccCCCcccceeecccccchhccC
Q 001052 21 AILYVNGLRKVLPDGLAHLTLLEYLRDIGLTGTK----LGCG-EGGCGACTVMVSRYDKKSKKCVHCAVNACLAPLYSLE 95 (1172)
Q Consensus 21 i~~~~Ng~~~~~~~~~p~~~L~~~LR~~~l~g~k----~gC~-~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~ 95 (1172)
|+|+|||+++++ .+++|+|+.+|..|+.-.. .+|. .|.|+.|.|.|++ +++.||.+|+. +
T Consensus 2 v~i~IdG~~v~~---~~G~til~aa~~~gi~iP~lC~~~~~~~~G~Cr~C~VeV~G----------~~~~AC~t~v~--d 66 (819)
T PRK08493 2 ITITINGKECEA---QEGEYILNVARRNGIFIPAICYLSGCSPTLACRLCMVEADG----------KRVYSCNTKAK--E 66 (819)
T ss_pred eEEEECCEEEEe---CCCCHHHHHHHHcCCccccccccCCCCCCccccceEEEECC----------EEeccccCCCC--C
Confidence 789999999875 5899999999998766543 3676 5999999999986 45899999994 9
Q ss_pred CceEEEeecccCCCCCcCHHHHHHHHhCCCCCCCCchH
Q 001052 96 GMHVITVEGVGNRKHGLHPIQESLVRSHGSQCGFCTPG 133 (1172)
Q Consensus 96 g~~i~T~Egl~~~~~~~~~iq~a~~~~~~~qCG~CtpG 133 (1172)
|..|.|-..- -....+.+++.+...|-.+|+.|..+
T Consensus 67 GM~V~T~s~~--v~~~Rk~vle~ll~~HpldC~~Cd~~ 102 (819)
T PRK08493 67 GMNILTNTPN--LMDERNAIMQTYDVNHPLECGVCDKS 102 (819)
T ss_pred CCEEEecCHH--HHHHHHHHHHHHHhccCCCCCcCCCC
Confidence 9999985221 01235678999999999999999864
No 42
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=97.88 E-value=3.2e-05 Score=74.60 Aligned_cols=67 Identities=24% Similarity=0.367 Sum_probs=53.0
Q ss_pred EEEecCCCCCCcHHHHHhh----C-CCCCcccCccCCCCCceEEEEeccccCCCcccceeecccccchhccCCc--eEEE
Q 001052 29 RKVLPDGLAHLTLLEYLRD----I-GLTGTKLGCGEGGCGACTVMVSRYDKKSKKCVHCAVNACLAPLYSLEGM--HVIT 101 (1172)
Q Consensus 29 ~~~~~~~~p~~~L~~~LR~----~-~l~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~--~i~T 101 (1172)
.++++ +++++|+|+.|.. + +=-..+.+|.+|.||+|.|.||| ++..+|.+++..+... ..+|
T Consensus 20 ~y~v~-~~~~~tVLd~L~~Ik~~~D~sLafr~sCr~giCGsCam~ING----------~~~LAC~t~v~~~~~~~~~~i~ 88 (110)
T PF13085_consen 20 EYEVP-VEPGMTVLDALNYIKEEQDPSLAFRYSCRSGICGSCAMRING----------RPRLACKTQVDDLIEKFGNVIT 88 (110)
T ss_dssp EEEEE-GGSTSBHHHHHHHHHHHT-TT--B--SSSSSSSSTTEEEETT----------EEEEGGGSBGGGCTTSETBEEE
T ss_pred EEEec-CCCCCcHHHHHHHHHhccCCCeEEEecCCCCCCCCCEEEECC----------ceecceeeEchhccCCCcceEE
Confidence 45665 6799999998874 2 44456799999999999999997 8899999999999866 3788
Q ss_pred eeccc
Q 001052 102 VEGVG 106 (1172)
Q Consensus 102 ~Egl~ 106 (1172)
||=|.
T Consensus 89 IePL~ 93 (110)
T PF13085_consen 89 IEPLP 93 (110)
T ss_dssp EEEST
T ss_pred EEECC
Confidence 99886
No 43
>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions. Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....
Probab=97.65 E-value=5.2e-05 Score=68.73 Aligned_cols=47 Identities=36% Similarity=0.615 Sum_probs=42.1
Q ss_pred EEECCEEEEecCCCCCCc-HHHHHhhCCCCCcccCccCCCCCceEEEEe
Q 001052 23 LYVNGLRKVLPDGLAHLT-LLEYLRDIGLTGTKLGCGEGGCGACTVMVS 70 (1172)
Q Consensus 23 ~~~Ng~~~~~~~~~p~~~-L~~~LR~~~l~g~k~gC~~G~CGaCtV~~~ 70 (1172)
+++||+.++++ +.++.+ ||+.|++.+-.++..+|+.|.||.|.|.|.
T Consensus 1 i~i~g~~~~~~-~~~~~~~ll~~~~~~~gi~i~~~C~~g~Cg~C~v~v~ 48 (78)
T PF00111_consen 1 ITINGKGVTVE-VPPGETLLLDALERAGGIGIPYSCGGGGCGTCRVRVL 48 (78)
T ss_dssp EETTTEEEEEE-EETTSBBHHHHHHHTTTTTSTTSSSSSSSSTTEEEEE
T ss_pred CEECCeEEEEE-eCCCccHHHHHHHHcCCCCcccCCCCCccCCcEEEEe
Confidence 47899999997 888998 999999985688999999999999999875
No 44
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=97.63 E-value=0.00014 Score=80.47 Aligned_cols=97 Identities=26% Similarity=0.317 Sum_probs=72.2
Q ss_pred eEEEEEECCEEEEecCCCCCCcHHHHHhhCCCCC-----cccCccCCCCCceEEEEeccccCCCcccceeecccccchhc
Q 001052 19 KEAILYVNGLRKVLPDGLAHLTLLEYLRDIGLTG-----TKLGCGEGGCGACTVMVSRYDKKSKKCVHCAVNACLAPLYS 93 (1172)
Q Consensus 19 ~~i~~~~Ng~~~~~~~~~p~~~L~~~LR~~~l~g-----~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~ 93 (1172)
+.|+|+|||+.++ +.+++|||+.++..|+.- .+.-|..|.||.|.|.|++. ...+.||.+++.
T Consensus 2 ~~v~i~idg~~~~---~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~g~--------~~~~~aC~t~v~- 69 (234)
T PRK07569 2 SVKTLTIDDQLVS---AREGETLLEAAREAGIPIPTLCHLDGLSDVGACRLCLVEIEGS--------NKLLPACVTPVA- 69 (234)
T ss_pred ceEEEEECCEEEE---eCCCCHHHHHHHHcCCCCCcCcCCCCCCCCCccCCcEEEECCC--------CccccCcCCCCC-
Confidence 4689999999975 458999999999865442 22234499999999999851 134679999987
Q ss_pred cCCceEEEeecccCCCCCc----CHHHHHHHHhCCCCCCCCchHH
Q 001052 94 LEGMHVITVEGVGNRKHGL----HPIQESLVRSHGSQCGFCTPGF 134 (1172)
Q Consensus 94 ~~g~~i~T~Egl~~~~~~~----~~iq~a~~~~~~~qCG~CtpG~ 134 (1172)
+|..|.|- .+++ .-+.+.+...|-.-|.-|..+-
T Consensus 70 -~Gm~v~t~------~~~~~~~rk~~l~~ll~~h~~~C~~C~~~g 107 (234)
T PRK07569 70 -EGMVVQTN------TPRLQEYRRMIVELLFAEGNHVCAVCVANG 107 (234)
T ss_pred -CCCEEEEC------CHHHHHHHHHHHHHHHHhccccCcccCCCC
Confidence 89999983 1222 2356677788999999998653
No 45
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=97.56 E-value=0.00068 Score=78.64 Aligned_cols=69 Identities=26% Similarity=0.402 Sum_probs=53.4
Q ss_pred EEEEecCCCCCCcHHHHHhhC--CCCC---cccCccCCCCCceEEEEeccccCCCcccceeecccccchhc-cC------
Q 001052 28 LRKVLPDGLAHLTLLEYLRDI--GLTG---TKLGCGEGGCGACTVMVSRYDKKSKKCVHCAVNACLAPLYS-LE------ 95 (1172)
Q Consensus 28 ~~~~~~~~~p~~~L~~~LR~~--~l~g---~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~-~~------ 95 (1172)
+.++++ +++++|+|+.|+.. .+.+ -..+|..|.||+|.|.||| +++.||.+++.. ++
T Consensus 19 ~~~~v~-~~~~~tvL~~l~~i~~~~d~tL~~~~~c~~~~Cg~C~v~inG----------~~~laC~t~v~~~~~~~~~~~ 87 (329)
T PRK12577 19 QTYTLE-VEPGNTILDCLNRIKWEQDGSLAFRKNCRNTICGSCAMRING----------RSALACKENVGSELARLSDSN 87 (329)
T ss_pred EEEEEE-CCCCChHHHHHHHhCCcCCCCcEEcCCCCCCCCCCCEEEECC----------eeecCcccchhhhhccccccc
Confidence 446665 88999999999974 4433 4568999999999999997 678899999875 32
Q ss_pred --CceEEEeecccC
Q 001052 96 --GMHVITVEGVGN 107 (1172)
Q Consensus 96 --g~~i~T~Egl~~ 107 (1172)
+...+|||=|++
T Consensus 88 ~~~~~~i~iePl~~ 101 (329)
T PRK12577 88 SGAIPEITIAPLGN 101 (329)
T ss_pred cCCCCeEEEEECCC
Confidence 235678998865
No 46
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=97.53 E-value=7.7e-05 Score=82.71 Aligned_cols=66 Identities=24% Similarity=0.370 Sum_probs=52.8
Q ss_pred EEEEecCCCCCCcHHHHHhh----CCCC-CcccCccCCCCCceEEEEeccccCCCcccceeecccccchhccCCceEEEe
Q 001052 28 LRKVLPDGLAHLTLLEYLRD----IGLT-GTKLGCGEGGCGACTVMVSRYDKKSKKCVHCAVNACLAPLYSLEGMHVITV 102 (1172)
Q Consensus 28 ~~~~~~~~~p~~~L~~~LR~----~~l~-g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~T~ 102 (1172)
+.++++ +++++|||+.|+. +..+ +.+.+|..|.||+|+|.||| +++.+|.+++..+.+. .||
T Consensus 25 ~~~~v~-~~~~~tvl~~L~~ik~~~d~~l~fr~~C~~giCGsC~v~InG----------~~~laC~t~~~~~~~~--~~i 91 (244)
T PRK12385 25 QTYEVP-YDETTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVNN----------VPKLACKTFLRDYTGG--MKV 91 (244)
T ss_pred EEEEee-CCCCCcHHHHHHHHHHhcCCCceeccCCCCCcCCCCcceECc----------cChhhHhhHHHHcCCC--eEE
Confidence 456665 7899999999954 2334 67889999999999999997 6789999999987432 678
Q ss_pred eccc
Q 001052 103 EGVG 106 (1172)
Q Consensus 103 Egl~ 106 (1172)
|=|.
T Consensus 92 ePl~ 95 (244)
T PRK12385 92 EALA 95 (244)
T ss_pred eeCC
Confidence 8775
No 47
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=97.23 E-value=0.0021 Score=73.62 Aligned_cols=155 Identities=15% Similarity=0.211 Sum_probs=99.3
Q ss_pred CccccCCCCceEEecCCHHHHHHHHhhC----CCcEEEeccCcceeeeeeccccCceEEecCCcccccceeecCCcEEEc
Q 001052 262 PLNLSGFGGLKWYRPLKLQHLLELKSKY----PDSKLLVGNTEVGIEMRLKRMQYQVLISVTHVPELNVLNVKDDGLEIG 337 (1172)
Q Consensus 262 ~~~~~~~~~~~~~~P~sl~eal~ll~~~----~~a~lvaGgTdl~v~~k~~~~~~~~lIdl~~v~EL~~I~~~~~~l~IG 337 (1172)
++.+++ ....|+.|+|.+|+.++++.. -...+++|||.+.+. ... .+..+|++++. +..|..+++.+++|
T Consensus 29 t~~igg-~a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgGSNllv~--d~g-~~gvVI~l~~~--~~~i~~~~~~v~v~ 102 (302)
T PRK14652 29 AVRVGG-PADLLVRPADPDALSALLRAVRELGVPLSILGGGANTLVA--DAG-VRGVVLRLPQD--FPGESTDGGRLVLG 102 (302)
T ss_pred EeecCC-cceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCcceeec--CCC-EeeEEEEecCC--cceEEecCCEEEEE
Confidence 455665 556788999999998877532 247789999999752 111 23578998753 56677777899999
Q ss_pred ccccHHHHHHHHHHhhhcCCCCccchHHHHHHHHHHhccccccccccccccccccC--C---CCChhHHHHhcCCEEEEE
Q 001052 338 AAVRLTELLKMFRKVVTERPAHETSSCKAFIEQIKWFAGTQIKNVASVGGNICTAS--P---ISDLNPLWMASGAKFHIV 412 (1172)
Q Consensus 338 A~vTl~~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~as--p---~sD~~~~Llal~A~v~l~ 412 (1172)
|++++.+|.+.+.+. .+. -+...++.. |||||++++-. . .+|.+. .|++.
T Consensus 103 AG~~~~~L~~~~~~~--GL~------------GlE~l~gIP----GTvGGav~mNaGa~ggei~d~v~-------~v~vv 157 (302)
T PRK14652 103 AGAPISRLPARAHAH--GLV------------GMEFLAGIP----GTLGGAVAMNAGTKLGEMKDVVT-------AVELA 157 (302)
T ss_pred CCCcHHHHHHHHHHc--CCc------------ccccccCCC----cchhHHHHHcCCCCceEhhheEE-------EEEEE
Confidence 999999999875431 110 011222221 69999996542 2 234332 45566
Q ss_pred eCCCCeEEEehHhhhcccccccCCCCeEEEEEEccC
Q 001052 413 DCKGNIRTTMAEEFFLGYRKVDLTSGEILLSIFLPW 448 (1172)
Q Consensus 413 s~~g~~R~vpl~dF~~g~~~t~L~~~Eil~~I~iP~ 448 (1172)
..+| .++++-+|..-+|+...++.+-||+++.+..
T Consensus 158 ~~~G-~~~~~~~e~~f~YR~s~~~~~~II~~a~~~L 192 (302)
T PRK14652 158 TADG-AGFVPAAALGYAYRTCRLPPGAVITRVEVRL 192 (302)
T ss_pred CCCC-cEEeehhhcCcccceeccCCCeEEEEEEEEE
Confidence 6666 6777777766677766555444666555444
No 48
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=97.10 E-value=0.00066 Score=75.08 Aligned_cols=68 Identities=22% Similarity=0.294 Sum_probs=54.7
Q ss_pred EEEEecCCCCCCcHHHHHhhC--CC---CCcccCccCCCCCceEEEEeccccCCCcccceeecccccchhccCCceEEEe
Q 001052 28 LRKVLPDGLAHLTLLEYLRDI--GL---TGTKLGCGEGGCGACTVMVSRYDKKSKKCVHCAVNACLAPLYSLEGMHVITV 102 (1172)
Q Consensus 28 ~~~~~~~~~p~~~L~~~LR~~--~l---~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~T~ 102 (1172)
+.++++ +++++|+|+.|+.. .+ -+.+.+|.+|.||+|.|.||| ++..+|.+.+..+.+. .+||
T Consensus 24 ~~y~v~-~~~~~tvLdaL~~Ik~~~D~sL~fr~sCr~giCGsCam~ING----------~~~LAC~t~v~~~~~~-~i~i 91 (239)
T PRK13552 24 VTYQLE-ETPGMTLFIALNRIREEQDPSLQFDFVCRAGICGSCAMVING----------RPTLACRTLTSDYPDG-VITL 91 (239)
T ss_pred EEEEec-CCCCCCHHHHHHHHHhcCCCCeeEeccCCCCCCCCceeEECC----------eEhhhhhccHhhcCCC-cEEE
Confidence 457775 78999999999851 32 345889999999999999997 7899999999887532 5789
Q ss_pred ecccC
Q 001052 103 EGVGN 107 (1172)
Q Consensus 103 Egl~~ 107 (1172)
|=|.+
T Consensus 92 ePl~~ 96 (239)
T PRK13552 92 MPLPV 96 (239)
T ss_pred EECCC
Confidence 98863
No 49
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=97.09 E-value=0.0026 Score=78.06 Aligned_cols=62 Identities=26% Similarity=0.492 Sum_probs=48.4
Q ss_pred EEEecCCCCCCcHHHHHhhC-CCCCc----ccCccCCCCCceEEEEeccccCCCcccceeecccccchhccCCceEEEee
Q 001052 29 RKVLPDGLAHLTLLEYLRDI-GLTGT----KLGCGEGGCGACTVMVSRYDKKSKKCVHCAVNACLAPLYSLEGMHVITVE 103 (1172)
Q Consensus 29 ~~~~~~~~p~~~L~~~LR~~-~l~g~----k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~T~E 103 (1172)
.++++ +++++|||+.|++. +.+.. +.+|..|.||+|+|.++| +++.+|.+++. +|..|.+..
T Consensus 22 ~~~v~-~~~~~tvl~al~~~~~~~~~~l~~~~~C~~g~Cg~C~v~v~G----------~~~laC~~~~~--~~~~i~~~~ 88 (486)
T PRK06259 22 SYEVP-VKEGMTVLDALEYINKTYDANIAFRSSCRAGQCGSCAVTING----------EPVLACKTEVE--DGMIIEPLD 88 (486)
T ss_pred EEEEe-CCCCChHHHHHHHhchhcCCCceecCCCCCCCCCCCEEEECC----------eEecccccCCC--CCCEEEecC
Confidence 45664 78999999999974 32232 789999999999999986 56789999885 577666664
No 50
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=97.05 E-value=0.0047 Score=70.94 Aligned_cols=149 Identities=17% Similarity=0.230 Sum_probs=96.8
Q ss_pred CceEEecCCHHHHHHHHhh---C-CCcEEEeccCcceeeeeeccccCceEEecCCcccccceeecCCcEEEcccccHHHH
Q 001052 270 GLKWYRPLKLQHLLELKSK---Y-PDSKLLVGNTEVGIEMRLKRMQYQVLISVTHVPELNVLNVKDDGLEIGAAVRLTEL 345 (1172)
Q Consensus 270 ~~~~~~P~sl~eal~ll~~---~-~~a~lvaGgTdl~v~~k~~~~~~~~lIdl~~v~EL~~I~~~~~~l~IGA~vTl~~l 345 (1172)
..-++.|.|.+|+.++++- + -...+++|||.+.+. .+. ....+|++++ |+.|+.+++.+++||++++.+|
T Consensus 37 a~~vv~p~~~edv~~~l~~a~~~~ip~~v~GgGSNll~~--d~g-~~GvvI~l~~---l~~i~~~~~~v~v~aG~~~~~L 110 (305)
T PRK12436 37 ADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNGSNVIIK--DGG-IRGITVSLIH---ITGVTVTGTTIVAQCGAAIIDV 110 (305)
T ss_pred EEEEEecCCHHHHHHHHHHHHHcCCCEEEEcCCeEEEEe--CCC-eeEEEEEeCC---cCcEEEeCCEEEEEeCCcHHHH
Confidence 3468899999999887742 2 236789999999752 121 2357899875 5567777889999999999999
Q ss_pred HHHHHHhhhcCCCCccchHHHHHHHHHHhccccccccccccccccc-cCCCC----ChhHHHHhcCCEEEEEeCCCCeEE
Q 001052 346 LKMFRKVVTERPAHETSSCKAFIEQIKWFAGTQIKNVASVGGNICT-ASPIS----DLNPLWMASGAKFHIVDCKGNIRT 420 (1172)
Q Consensus 346 ~~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~-asp~s----D~~~~Llal~A~v~l~s~~g~~R~ 420 (1172)
.+.+.+. .+. . +...+ ---|||||++.+ +.-.+ |.. ..+++...+|..++
T Consensus 111 ~~~~~~~--gl~--------G----le~~~----giPGtVGGav~~NAGayG~~~~dvl-------~~v~vv~~~G~v~~ 165 (305)
T PRK12436 111 SRIALDH--NLT--------G----LEFAC----GIPGSVGGALYMNAGAYGGEISFVL-------TEAVVMTGDGELRT 165 (305)
T ss_pred HHHHHHc--CCc--------c----chhhc----CCccchhHHHHhcCccchhehheee-------eEEEEEeCCCCEEE
Confidence 9875432 110 0 01111 124799999974 33222 221 12344456676888
Q ss_pred EehHhhhcccccccCCCC-eEEEEEEccCC
Q 001052 421 TMAEEFFLGYRKVDLTSG-EILLSIFLPWT 449 (1172)
Q Consensus 421 vpl~dF~~g~~~t~L~~~-Eil~~I~iP~~ 449 (1172)
++-+|..-+||.+.++.+ .||+++.+...
T Consensus 166 ~~~~e~~f~YR~s~~~~~~~iil~a~~~l~ 195 (305)
T PRK12436 166 LTKEAFEFGYRKSVFANNHYIILEARFELE 195 (305)
T ss_pred EEHHHhcCcCCCCcCCCCCEEEEEEEEEEc
Confidence 999998888998887653 36666555443
No 51
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=97.00 E-value=0.00066 Score=75.39 Aligned_cols=69 Identities=23% Similarity=0.382 Sum_probs=54.3
Q ss_pred EEEEecCCCCCCcHHHHHhhC--CC-------CCcccCccCCCCCceEEEEeccccCCCccccee------ecccccchh
Q 001052 28 LRKVLPDGLAHLTLLEYLRDI--GL-------TGTKLGCGEGGCGACTVMVSRYDKKSKKCVHCA------VNACLAPLY 92 (1172)
Q Consensus 28 ~~~~~~~~~p~~~L~~~LR~~--~l-------~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~------v~sCl~~~~ 92 (1172)
+.++++.+++++|+|+.|... .+ -+.+.+|.+|.||+|.|.||| ++ ..+|.+.+.
T Consensus 20 q~y~v~~~~~~~tvLd~L~~Ik~~~~~~~~~~l~fr~sCr~~iCGsCam~ING----------~p~~~~~~~LAC~t~~~ 89 (250)
T PRK07570 20 ETYEVDDISPDMSFLEMLDVLNEQLIEKGEEPVAFDHDCREGICGMCGLVING----------RPHGPDRGTTTCQLHMR 89 (250)
T ss_pred EEEEecCCCCCCcHHHHHHHHHHHhhccCCCCeeEeccccCCcCCcceeEECC----------ccCCCCcccchhhhhhh
Confidence 446664367899999999741 22 467889999999999999997 67 789999988
Q ss_pred ccCCceEEEeeccc
Q 001052 93 SLEGMHVITVEGVG 106 (1172)
Q Consensus 93 ~~~g~~i~T~Egl~ 106 (1172)
.+.+...+|||=|.
T Consensus 90 ~~~~~~~i~iePl~ 103 (250)
T PRK07570 90 SFKDGDTITIEPWR 103 (250)
T ss_pred hcCCCCeEEEEECC
Confidence 77654568899884
No 52
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=96.92 E-value=0.007 Score=69.06 Aligned_cols=156 Identities=18% Similarity=0.152 Sum_probs=98.1
Q ss_pred CccccCCCCceEEecCCHHHHHHHHhhC---CCcEEEeccCcceeeeeeccccCceEEecCCcccccceeecCCcEEEcc
Q 001052 262 PLNLSGFGGLKWYRPLKLQHLLELKSKY---PDSKLLVGNTEVGIEMRLKRMQYQVLISVTHVPELNVLNVKDDGLEIGA 338 (1172)
Q Consensus 262 ~~~~~~~~~~~~~~P~sl~eal~ll~~~---~~a~lvaGgTdl~v~~k~~~~~~~~lIdl~~v~EL~~I~~~~~~l~IGA 338 (1172)
++.+++ .-.-|+.|+|.+|+.++++.. -...+++|||.+.+.-. . .+..+|.+++ |+.|+.+++.++.||
T Consensus 27 t~~iGG-~A~~~v~p~s~eel~~~~~~~~~~~p~~vlG~GSNlLv~d~--g-~~gvVI~l~~---~~~i~i~~~~v~v~A 99 (297)
T PRK14653 27 SFKIGG-PVPLFAIPNSTNGFIETINLLKEGIEVKILGNGTNVLPKDE--P-MDFVVVSTER---LDDIFVDNDKIICES 99 (297)
T ss_pred EeeeCc-EEEEEEecCCHHHHHHHHHHHhcCCCEEEEcCCeeEEEecC--C-ccEEEEEeCC---cCceEEeCCEEEEeC
Confidence 455666 455789999999998877532 23779999999988422 1 2367788755 567777778899999
Q ss_pred cccHHHHHHHHHHhhhcCCCCccchHHHHHHHHHHhccccccccccccccccc-cCC-CCChhHHHHhcCCEEEEEeCCC
Q 001052 339 AVRLTELLKMFRKVVTERPAHETSSCKAFIEQIKWFAGTQIKNVASVGGNICT-ASP-ISDLNPLWMASGAKFHIVDCKG 416 (1172)
Q Consensus 339 ~vTl~~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~-asp-~sD~~~~Llal~A~v~l~s~~g 416 (1172)
++++.+|...+.+ ..+. -+..+++. =|||||++++ |.- -.++.=.+. +|++.+ +|
T Consensus 100 G~~l~~L~~~~~~--~GL~------------GlE~l~gI----PGTVGGAv~mNAGayG~ei~d~l~----~V~~~d-~g 156 (297)
T PRK14653 100 GLSLKKLCLVAAK--NGLS------------GFENAYGI----PGSVGGAVYMNAGAYGWETAENIV----EVVAYD-GK 156 (297)
T ss_pred CCcHHHHHHHHHH--CCCc------------chhhhcCC----chhHHHHHHHhCccCchhhheeEE----EEEEEC-CC
Confidence 9999999987532 1111 12223333 4789999964 322 122222222 666666 34
Q ss_pred CeEEEehHhhhcccccccCCCC--eEEEEEEcc
Q 001052 417 NIRTTMAEEFFLGYRKVDLTSG--EILLSIFLP 447 (1172)
Q Consensus 417 ~~R~vpl~dF~~g~~~t~L~~~--Eil~~I~iP 447 (1172)
+.++++-+|.--+||...++.+ -||+++.+.
T Consensus 157 ~v~~~~~~e~~f~YR~S~~~~~~~~iI~~a~f~ 189 (297)
T PRK14653 157 KIIRLGKNEIKFSYRNSIFKEEKDLIILRVTFK 189 (297)
T ss_pred EEEEEchhhccccCccccCCCCCcEEEEEEEEE
Confidence 3677777776667776665442 255554443
No 53
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=96.76 E-value=0.0017 Score=70.75 Aligned_cols=67 Identities=28% Similarity=0.376 Sum_probs=55.7
Q ss_pred EEEecCCCCCCcHHHHHhh----C-CCCCcccCccCCCCCceEEEEeccccCCCcccceeecccccchhccCCceEEEee
Q 001052 29 RKVLPDGLAHLTLLEYLRD----I-GLTGTKLGCGEGGCGACTVMVSRYDKKSKKCVHCAVNACLAPLYSLEGMHVITVE 103 (1172)
Q Consensus 29 ~~~~~~~~p~~~L~~~LR~----~-~l~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~T~E 103 (1172)
.++++ .++++++|+.|.. + .=-..+..|.+|.||+|.+.||| ++..+|.+.+..+... ++|||
T Consensus 21 ~yev~-~~~~~~vLdaL~~Ik~e~d~~Lsfr~sCR~gICGSCam~ING----------~prLAC~t~~~~~~~~-~i~ie 88 (234)
T COG0479 21 TYEVP-YDEGMTVLDALLYIKEEQDPTLSFRRSCREGICGSCAMNING----------KPRLACKTLMKDLEEG-VITIE 88 (234)
T ss_pred EEEec-CCCCCcHHHHHHHHHHhcCCccchhhhccCCcCCcceeEECC----------ccccchhchhhhccCC-ceEEE
Confidence 46665 7799999998874 2 44456889999999999999997 7889999999998766 88999
Q ss_pred cccC
Q 001052 104 GVGN 107 (1172)
Q Consensus 104 gl~~ 107 (1172)
=|.+
T Consensus 89 PL~~ 92 (234)
T COG0479 89 PLPN 92 (234)
T ss_pred ECCC
Confidence 8873
No 54
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=96.75 E-value=0.0013 Score=73.21 Aligned_cols=67 Identities=24% Similarity=0.408 Sum_probs=53.2
Q ss_pred EEEEecCCCCCCcHHHHHhhC--C---CC-------CcccCccCCCCCceEEEEeccccCCCcccceeecccccchhccC
Q 001052 28 LRKVLPDGLAHLTLLEYLRDI--G---LT-------GTKLGCGEGGCGACTVMVSRYDKKSKKCVHCAVNACLAPLYSLE 95 (1172)
Q Consensus 28 ~~~~~~~~~p~~~L~~~LR~~--~---l~-------g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~ 95 (1172)
+.++++ +++++|+|+.|... . +. ..+.+|.+|.||+|.|.||| ++..+|.+.+-.+.
T Consensus 23 q~y~v~-~~~~~tvLdaL~~I~~~~~~~~g~~~~~l~fr~sCr~giCGsCam~ING----------~p~LAC~t~v~~~~ 91 (249)
T PRK08640 23 EEFEIP-YRPNMNVISALMEIRRNPVNAKGEKTTPVVWDMNCLEEVCGACSMVING----------KPRQACTALIDQLE 91 (249)
T ss_pred EEEEec-CCCCCcHHHHHHHHHhcccccccccCCCeeEecccCCCCCCcCeeEECC----------ccchhhhChHHHcC
Confidence 457775 78999999999852 2 22 34679999999999999997 78999999998773
Q ss_pred CceEEEeecccC
Q 001052 96 GMHVITVEGVGN 107 (1172)
Q Consensus 96 g~~i~T~Egl~~ 107 (1172)
..+|||=|.+
T Consensus 92 --~~i~iePl~~ 101 (249)
T PRK08640 92 --QPIRLEPMST 101 (249)
T ss_pred --CcEEEEECCC
Confidence 3478998863
No 55
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=96.66 E-value=0.0025 Score=70.27 Aligned_cols=66 Identities=23% Similarity=0.286 Sum_probs=51.3
Q ss_pred EEEEecCCCC-CCcHHHHHhh---C-CCCCcccCccCCCCCceEEEEeccccCCCcccceeecccccchhccCCceEEEe
Q 001052 28 LRKVLPDGLA-HLTLLEYLRD---I-GLTGTKLGCGEGGCGACTVMVSRYDKKSKKCVHCAVNACLAPLYSLEGMHVITV 102 (1172)
Q Consensus 28 ~~~~~~~~~p-~~~L~~~LR~---~-~l~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~T~ 102 (1172)
+.++++ +++ ++|+|+.|.. + +=-+.+.+|.+|.||+|.|.||| ++..+|.+.+..+.+ -+||
T Consensus 23 ~~y~v~-~~~~~~tvld~L~~ik~~d~~l~fr~sCr~giCGsCa~~iNG----------~~~LaC~t~~~~~~~--~i~i 89 (235)
T PRK12575 23 QRYEIA-PRAEDRMLLDVLGRVKAQDETLSYRRSCREGICGSDAMNING----------RNGLACLTNMQALPR--EIVL 89 (235)
T ss_pred EEEEec-CCCCCCcHHHHHHHHHhcCCCeeeeccCCCCCCCCCeeEECC----------eEcchhhCcHhHcCC--CEEE
Confidence 345664 554 6899999885 2 33345789999999999999997 789999999998743 3689
Q ss_pred eccc
Q 001052 103 EGVG 106 (1172)
Q Consensus 103 Egl~ 106 (1172)
|=|.
T Consensus 90 ePl~ 93 (235)
T PRK12575 90 RPLP 93 (235)
T ss_pred eECC
Confidence 9886
No 56
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=96.65 E-value=0.0032 Score=81.70 Aligned_cols=99 Identities=20% Similarity=0.302 Sum_probs=76.5
Q ss_pred eEEEEEECCEEEEecCCCCCCcHHHHHhhC-----CCCCcccCccCCCCCceEEEEeccccCCCcccceeecccccchhc
Q 001052 19 KEAILYVNGLRKVLPDGLAHLTLLEYLRDI-----GLTGTKLGCGEGGCGACTVMVSRYDKKSKKCVHCAVNACLAPLYS 93 (1172)
Q Consensus 19 ~~i~~~~Ng~~~~~~~~~p~~~L~~~LR~~-----~l~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~ 93 (1172)
..++|+|||+.+++ .+++||++.++.. .|...+.-+..|.|.-|.|.|++.. +.+.||.+|+.
T Consensus 3 ~~v~~~idg~~~~~---~~g~til~aa~~~gi~ip~~C~~~~l~~~g~Cr~C~Vev~g~~--------~~~~aC~t~v~- 70 (797)
T PRK07860 3 DLVTLTIDGVEVSV---PKGTLVIRAAELLGIQIPRFCDHPLLDPVGACRQCLVEVEGQR--------KPQASCTTTVT- 70 (797)
T ss_pred ceEEEEECCEEEEe---CCCChHHHHHHHcCCCCCeecCCCCCCCCcccCccEEEECCCc--------ccccccCCCCC-
Confidence 36899999999875 5899999999874 4556666677999999999998621 46899999987
Q ss_pred cCCceEEEe---ecccCCCCCcCHHHHHHHHhCCCCCCCCchH
Q 001052 94 LEGMHVITV---EGVGNRKHGLHPIQESLVRSHGSQCGFCTPG 133 (1172)
Q Consensus 94 ~~g~~i~T~---Egl~~~~~~~~~iq~a~~~~~~~qCG~CtpG 133 (1172)
+|..|.|- |-+. ..-+-+.+-+...|--.|..|.-+
T Consensus 71 -~gm~V~t~~~s~~v~---~~r~~~le~ll~~hp~dC~~C~~~ 109 (797)
T PRK07860 71 -DGMVVKTQLTSPVAD---KAQHGVMELLLINHPLDCPVCDKG 109 (797)
T ss_pred -CCcEEEeCCCCHHHH---HHHHHHHHHHHhcCCCCCCCCCCC
Confidence 79999983 2221 122446777888899999999876
No 57
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=96.64 E-value=0.011 Score=67.81 Aligned_cols=158 Identities=22% Similarity=0.326 Sum_probs=105.3
Q ss_pred CccccCCCCceEEecCCHHHHHHHHhhC---C-CcEEEeccCcceeeeeeccccCceEEecCCcccccceeecCCcEEEc
Q 001052 262 PLNLSGFGGLKWYRPLKLQHLLELKSKY---P-DSKLLVGNTEVGIEMRLKRMQYQVLISVTHVPELNVLNVKDDGLEIG 337 (1172)
Q Consensus 262 ~~~~~~~~~~~~~~P~sl~eal~ll~~~---~-~a~lvaGgTdl~v~~k~~~~~~~~lIdl~~v~EL~~I~~~~~~l~IG 337 (1172)
++.+++ ....++.|+|.+|+.++++.. . ...+++|||.+.+. .. .....+||+++ +|+.|+.+++.+++|
T Consensus 24 t~~igg-~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~GgGsnll~~--d~-g~~gvvI~l~~--~l~~i~~~~~~v~v~ 97 (298)
T PRK13905 24 SFRVGG-PADYLVEPADIEDLQEFLKLLKENNIPVTVLGNGSNLLVR--DG-GIRGVVIRLGK--GLNEIEVEGNRITAG 97 (298)
T ss_pred eeecCc-eEeEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCceEEec--CC-CcceEEEEecC--CcceEEecCCEEEEE
Confidence 455555 445679999999998877532 2 47889999998642 11 12367899873 467777778899999
Q ss_pred ccccHHHHHHHHHHhhhcCCCCccchHHHHHHHHHHhccccccccccccccccc-cCC----CCChhHHHHhcCCEEEEE
Q 001052 338 AAVRLTELLKMFRKVVTERPAHETSSCKAFIEQIKWFAGTQIKNVASVGGNICT-ASP----ISDLNPLWMASGAKFHIV 412 (1172)
Q Consensus 338 A~vTl~~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~-asp----~sD~~~~Llal~A~v~l~ 412 (1172)
|++++.+|.+.+.+. .+. -+...++. -+||||.++. +.- .+|.+. .|++.
T Consensus 98 aG~~~~~L~~~l~~~--Gl~------------gle~~~gi----pGTVGGai~~NaG~~G~~~~d~v~-------~v~vv 152 (298)
T PRK13905 98 AGAPLIKLARFAAEA--GLS------------GLEFAAGI----PGTVGGAVFMNAGAYGGETADVLE-------SVEVL 152 (298)
T ss_pred CCCcHHHHHHHHHHc--CCC------------cchhccCC----CcchhHHHHHcCCcCceEhheeEE-------EEEEE
Confidence 999999999886432 110 01112222 2789998863 322 223321 35556
Q ss_pred eCCCCeEEEehHhhhcccccccCCC-CeEEEEEEccCCC
Q 001052 413 DCKGNIRTTMAEEFFLGYRKVDLTS-GEILLSIFLPWTR 450 (1172)
Q Consensus 413 s~~g~~R~vpl~dF~~g~~~t~L~~-~Eil~~I~iP~~~ 450 (1172)
..+|..++++-+|.+-+|+...+.. ..||+++.+...+
T Consensus 153 ~~~G~~~~~~~~e~~~~yR~s~~~~~~gII~~~~l~l~~ 191 (298)
T PRK13905 153 DRDGEIKTLSNEELGFGYRHSALQEEGLIVLSATFQLEP 191 (298)
T ss_pred eCCCCEEEEEHHHcCCcCccccCCCCCEEEEEEEEEEcC
Confidence 6677678888889888899887763 4688888776653
No 58
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=96.57 E-value=0.0042 Score=57.35 Aligned_cols=48 Identities=25% Similarity=0.483 Sum_probs=39.2
Q ss_pred EEEEEECCEEEEecCCCCCCcHHHHHhhCCCCCcccCccCCCCCceEEEEe
Q 001052 20 EAILYVNGLRKVLPDGLAHLTLLEYLRDIGLTGTKLGCGEGGCGACTVMVS 70 (1172)
Q Consensus 20 ~i~~~~Ng~~~~~~~~~p~~~L~~~LR~~~l~g~k~gC~~G~CGaCtV~~~ 70 (1172)
.|.|.-+|+.+.+. +.+.+||+.|++.|+ ....+|..|.||+|.+-+-
T Consensus 3 ~v~~~~~~~~~~~~--~~~~tlL~a~~~~gi-~~p~~Cr~G~Cg~C~~~~~ 50 (84)
T PRK10713 3 RVTLRITGTQLLCQ--DEHPSLLAALESHNV-AVEYQCREGYCGSCRTRLV 50 (84)
T ss_pred EEEEEeCCcEEEec--CCCCcHHHHHHHcCC-CCCCCCCCeECCCCEeEEE
Confidence 56777788776653 346999999999987 6889999999999999763
No 59
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=96.55 E-value=0.0082 Score=60.55 Aligned_cols=103 Identities=13% Similarity=0.153 Sum_probs=71.4
Q ss_pred eEEecCCHHHHHHHHhhC----CCcEEEeccCcceeeeeeccccCceEEecCCcccccceeecCCcEEEcccccHHHHHH
Q 001052 272 KWYRPLKLQHLLELKSKY----PDSKLLVGNTEVGIEMRLKRMQYQVLISVTHVPELNVLNVKDDGLEIGAAVRLTELLK 347 (1172)
Q Consensus 272 ~~~~P~sl~eal~ll~~~----~~a~lvaGgTdl~v~~k~~~~~~~~lIdl~~v~EL~~I~~~~~~l~IGA~vTl~~l~~ 347 (1172)
-+++|+|.+|+.++++.. -..++.+||+...-. .......+||++++...-.+..++..++++|++++.||.+
T Consensus 3 ~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~---~~~~~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~~ 79 (139)
T PF01565_consen 3 AVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTGQ---SSDEGGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLYE 79 (139)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSST---TSSTTEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcccc---cccCCcEEEeeccccccccccccceeEEEeccccchhccc
Confidence 478999999998877643 246778888888632 1135568999998766555555678999999999999999
Q ss_pred HHHHhhhcCCCCccchHHHHHHHHHHhccccccccccccccccccCC
Q 001052 348 MFRKVVTERPAHETSSCKAFIEQIKWFAGTQIKNVASVGGNICTASP 394 (1172)
Q Consensus 348 ~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp 394 (1172)
.|.+.-..++ -.+.--.-+|+||.|++...
T Consensus 80 ~l~~~g~~~~-----------------~~~~~~~~~tvGG~i~~~~~ 109 (139)
T PF01565_consen 80 ALAPRGLMLP-----------------VEPGSGIPGTVGGAIAGNGH 109 (139)
T ss_dssp HHHHHTEEES-----------------SGGGSTTTSBHHHHHHTT-E
T ss_pred cccccccccc-----------------ccccccccceEchhhcCCCc
Confidence 8743211111 01333456799999987643
No 60
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=96.54 E-value=0.013 Score=66.64 Aligned_cols=161 Identities=14% Similarity=0.162 Sum_probs=99.0
Q ss_pred CccccCCCCceEEecCCHHHHHHHHhh---C-CCcEEEeccCcceeeeeeccccCceEEecCCcccccceeecCCcEEEc
Q 001052 262 PLNLSGFGGLKWYRPLKLQHLLELKSK---Y-PDSKLLVGNTEVGIEMRLKRMQYQVLISVTHVPELNVLNVKDDGLEIG 337 (1172)
Q Consensus 262 ~~~~~~~~~~~~~~P~sl~eal~ll~~---~-~~a~lvaGgTdl~v~~k~~~~~~~~lIdl~~v~EL~~I~~~~~~l~IG 337 (1172)
++.+++ ...-|+.|+|.+|+.++++- + -...+++|||.+.+.- ......+|++.+.... +...+..+++|
T Consensus 6 t~~igg-~a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgGSNll~~d---~~~~gvvi~l~~~~~~--~~~~~~~v~v~ 79 (284)
T TIGR00179 6 TYKIGG-NARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGSNLLILD---DGRGGVIINLGKGIDI--EDDEGEYVHVG 79 (284)
T ss_pred eeecCc-eeeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecceEEEEcc---CCcCeEEEECCCCceE--EEecCCEEEEE
Confidence 344555 45679999999999887753 2 2478999999998632 1223578998764322 22335679999
Q ss_pred ccccHHHHHHHHHHhhhcCCCCccchHHHHHHHHHHhccccccccccccccccccCCCCChhHHHHhcCCEEEEEeCCCC
Q 001052 338 AAVRLTELLKMFRKVVTERPAHETSSCKAFIEQIKWFAGTQIKNVASVGGNICTASPISDLNPLWMASGAKFHIVDCKGN 417 (1172)
Q Consensus 338 A~vTl~~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp~sD~~~~Llal~A~v~l~s~~g~ 417 (1172)
|++++.+|.+.+.+. .+. -+...++. -|||||++++-.-.-..-.-=... .|++...+|.
T Consensus 80 aG~~~~~l~~~~~~~--Gl~------------GlE~l~gi----PGtvGGai~mNAGayG~~i~d~l~--~v~vv~~~G~ 139 (284)
T TIGR00179 80 GGENWHKLVKYALKN--GLS------------GLEFLAGI----PGTVGGAVIMNAGAYGVEISEVLV--YATILLATGK 139 (284)
T ss_pred cCCcHHHHHHHHHHC--CCc------------ccccCCCC----CchHHHHHHHhcccchhehhheEE--EEEEEeCCCC
Confidence 999999999875321 110 01112221 158999997533221110000111 3455566675
Q ss_pred eEEEehHhhhcccccccCCCCe--EEEEEEccC
Q 001052 418 IRTTMAEEFFLGYRKVDLTSGE--ILLSIFLPW 448 (1172)
Q Consensus 418 ~R~vpl~dF~~g~~~t~L~~~E--il~~I~iP~ 448 (1172)
.++++-+|.--+||.+.++.+. ++++..+..
T Consensus 140 ~~~~~~~~~~f~YR~S~f~~~~~~iil~a~~~l 172 (284)
T TIGR00179 140 TEWLTNEQLGFGYRTSIFQHKYVGLVLKAEFQL 172 (284)
T ss_pred EEEEEHHHccccCCccccCCCCcEEEEEEEEEe
Confidence 7889999988889988887643 666655543
No 61
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=96.53 E-value=0.003 Score=70.94 Aligned_cols=67 Identities=19% Similarity=0.230 Sum_probs=51.3
Q ss_pred EEEecCCCC-CCcHHHHHhh----C-CCCCcccCccCCCCCceEEEEeccccCCCcccceeecccccchhccCCceEEEe
Q 001052 29 RKVLPDGLA-HLTLLEYLRD----I-GLTGTKLGCGEGGCGACTVMVSRYDKKSKKCVHCAVNACLAPLYSLEGMHVITV 102 (1172)
Q Consensus 29 ~~~~~~~~p-~~~L~~~LR~----~-~l~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~T~ 102 (1172)
.++++ +.+ ++|+||.|+. + .=-..+.+|.+|.||+|.|.||| ++..+|.+.+..+.+. .+||
T Consensus 63 ~y~v~-~~~~~~tVLd~L~~Ik~~~D~sLsfr~sCr~giCGsCam~ING----------~p~LAC~t~v~~~~~~-~i~i 130 (276)
T PLN00129 63 SYKVD-LNDCGPMVLDVLIKIKNEQDPSLTFRRSCREGICGSCAMNIDG----------KNTLACLTKIDRDESG-PTTI 130 (276)
T ss_pred EEEeC-CCCCCchHHHHHHHHHHcCCCCeEEeccCCCCCCCCCeeEECC----------cccccccccHhhcCCC-cEEE
Confidence 34554 555 7999999985 1 22346789999999999999997 7899999999877433 4679
Q ss_pred ecccC
Q 001052 103 EGVGN 107 (1172)
Q Consensus 103 Egl~~ 107 (1172)
|=|.+
T Consensus 131 ePl~~ 135 (276)
T PLN00129 131 TPLPH 135 (276)
T ss_pred EECCC
Confidence 98863
No 62
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=96.51 E-value=0.028 Score=64.19 Aligned_cols=158 Identities=17% Similarity=0.245 Sum_probs=103.1
Q ss_pred CCccccCCCCceEEecCCHHHHHHHHhhC----CCcEEEeccCcceeeeeeccccCceEEecCCcccccceeecCCcEEE
Q 001052 261 NPLNLSGFGGLKWYRPLKLQHLLELKSKY----PDSKLLVGNTEVGIEMRLKRMQYQVLISVTHVPELNVLNVKDDGLEI 336 (1172)
Q Consensus 261 ~~~~~~~~~~~~~~~P~sl~eal~ll~~~----~~a~lvaGgTdl~v~~k~~~~~~~~lIdl~~v~EL~~I~~~~~~l~I 336 (1172)
.++.+++ .-..|+.|.|++|+.++++.. -...+++||+.+++.- +......+|-+.+ ++.|+..++.|++
T Consensus 25 tt~~iGG-~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSNlLv~D--~g~~~g~vi~~~~---~~~i~~~~~~v~a 98 (302)
T PRK14650 25 TTYKIGG-ISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNILIND--EEEIDFPIIYTGH---LNKIEIHDNQIVA 98 (302)
T ss_pred ceeeeCc-EEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEEC--CCccceEEEEECC---cCcEEEeCCEEEE
Confidence 4566766 456788899999998887642 2478899999998832 1112245666543 6777777788999
Q ss_pred cccccHHHHHHHHHHhhhcCCCCccchHHHHHHHHHHhcccccccccccccccc-ccC----CCCChhHHHHhcCCEEEE
Q 001052 337 GAAVRLTELLKMFRKVVTERPAHETSSCKAFIEQIKWFAGTQIKNVASVGGNIC-TAS----PISDLNPLWMASGAKFHI 411 (1172)
Q Consensus 337 GA~vTl~~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~-~as----p~sD~~~~Llal~A~v~l 411 (1172)
||++.+.+|.....+ ..+ .. +...++.+ |||||.++ ||. -++|.+. +|++
T Consensus 99 ~AG~~~~~l~~~~~~--~gl--------~G----lE~l~gIP----GTVGGAv~mNAGayG~ei~d~l~-------sV~~ 153 (302)
T PRK14650 99 ECGTNFEDLCKFALQ--NEL--------SG----LEFIYGLP----GTLGGAIWMNARCFGNEISEILD-------KITF 153 (302)
T ss_pred EeCCcHHHHHHHHHH--cCC--------ch----hhhhcCCC----cchhHHHHhhCCccccchheeEE-------EEEE
Confidence 999999999987432 111 11 12222222 67777774 332 2344432 4556
Q ss_pred EeCCCCeEEEehHhhhcccccccCCC-CeEEEEEEccCC
Q 001052 412 VDCKGNIRTTMAEEFFLGYRKVDLTS-GEILLSIFLPWT 449 (1172)
Q Consensus 412 ~s~~g~~R~vpl~dF~~g~~~t~L~~-~Eil~~I~iP~~ 449 (1172)
...+|..++++-+|.--+||...++. +.||+++.+...
T Consensus 154 ~d~~g~~~~~~~~e~~f~YR~S~f~~~~~iIl~a~f~L~ 192 (302)
T PRK14650 154 IDEKGKTICKKFKKEEFKYKISPFQNKNTFILKATLNLK 192 (302)
T ss_pred EECCCCEEEEEHHHcCcccccccCCCCCEEEEEEEEEEc
Confidence 66666688899999888999888876 347777766554
No 63
>CHL00134 petF ferredoxin; Validated
Probab=96.49 E-value=0.0049 Score=58.80 Aligned_cols=43 Identities=19% Similarity=0.495 Sum_probs=37.8
Q ss_pred CCEEEEecCCCCCCcHHHHHhhCCCCCcccCccCCCCCceEEEEe
Q 001052 26 NGLRKVLPDGLAHLTLLEYLRDIGLTGTKLGCGEGGCGACTVMVS 70 (1172)
Q Consensus 26 Ng~~~~~~~~~p~~~L~~~LR~~~l~g~k~gC~~G~CGaCtV~~~ 70 (1172)
+|..+.++ ++++++||+.|++.|+ ....+|+.|.||.|.|-+-
T Consensus 13 ~~~~~~~~-~~~~~tLL~a~~~~Gi-~i~~~C~~G~Cg~C~v~v~ 55 (99)
T CHL00134 13 EGIDVTID-CPDDVYILDAAEEQGI-DLPYSCRAGACSTCAGKVT 55 (99)
T ss_pred CCCeEEEE-ECCCCcHHHHHHHcCC-CCCcCCCCccCCCCEEEEE
Confidence 77777775 8899999999999997 6889999999999999873
No 64
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=96.47 E-value=0.0094 Score=66.59 Aligned_cols=97 Identities=26% Similarity=0.359 Sum_probs=70.6
Q ss_pred ceEEEEEECCEEEEecCCCCCCcHHHHHhhCCCCCccc----Cc-cCCCCCceEEEEeccccCCCcccceeecccccchh
Q 001052 18 TKEAILYVNGLRKVLPDGLAHLTLLEYLRDIGLTGTKL----GC-GEGGCGACTVMVSRYDKKSKKCVHCAVNACLAPLY 92 (1172)
Q Consensus 18 ~~~i~~~~Ng~~~~~~~~~p~~~L~~~LR~~~l~g~k~----gC-~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~ 92 (1172)
.....++|||+++++. ++++|||+..|+.|+.=..+ +. ..|.|+-|.|.|++.. +.+.||.+|+.
T Consensus 66 ~~~~~I~IDGk~VeV~--~~G~TILeAAr~~GI~IPtLCy~~~L~p~G~CRlClVEVeG~~--------~lv~AC~tpV~ 135 (297)
T PTZ00305 66 KPRAIMFVNKRPVEII--PQEENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQVDGTQ--------NLVVSCATVAL 135 (297)
T ss_pred CCceEEEECCEEEEec--CCCChHHHHHHHcCCCcCccccCCCCCCCCccceeEEEECCCc--------CcccccCCcCC
Confidence 4567789999999862 58999999999865443332 23 3789999999997621 57899999987
Q ss_pred ccCCceEEEeecccCCCCCc----CHHHHHHHHhCCCCCCCCch
Q 001052 93 SLEGMHVITVEGVGNRKHGL----HPIQESLVRSHGSQCGFCTP 132 (1172)
Q Consensus 93 ~~~g~~i~T~Egl~~~~~~~----~~iq~a~~~~~~~qCG~Ctp 132 (1172)
+|..|.|- .+.+ .-+.+-+...|-.-|.-|.-
T Consensus 136 --eGM~V~T~------Se~v~~~Rk~vLElLLs~Hp~DC~~C~k 171 (297)
T PTZ00305 136 --PGMSIITD------SRLVRDAREGNVELILINHPNDCPICEQ 171 (297)
T ss_pred --CCCEEEeC------CHHHHHHHHHHHHHHHhcCCCcCCcccC
Confidence 79999982 2222 33555666777777877775
No 65
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=96.35 E-value=0.0063 Score=57.82 Aligned_cols=43 Identities=19% Similarity=0.451 Sum_probs=36.6
Q ss_pred CCEEEEecCCCCCCcHHHHHhhCCCCCcccCccCCCCCceEEEEe
Q 001052 26 NGLRKVLPDGLAHLTLLEYLRDIGLTGTKLGCGEGGCGACTVMVS 70 (1172)
Q Consensus 26 Ng~~~~~~~~~p~~~L~~~LR~~~l~g~k~gC~~G~CGaCtV~~~ 70 (1172)
+|+...++ ++++.+||+.|++.|+. ...+|+.|.||.|.|-|-
T Consensus 11 ~~~~~~~~-~~~g~tLLda~~~~Gi~-i~~~C~~G~Cg~C~v~v~ 53 (97)
T TIGR02008 11 DGGEETIE-CPDDQYILDAAEEAGID-LPYSCRAGACSTCAGKVE 53 (97)
T ss_pred CCCEEEEE-ECCCCcHHHHHHHcCCC-CCcCCCCccCCCCceEEE
Confidence 77556665 78999999999998874 788999999999999773
No 66
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=96.33 E-value=0.028 Score=64.69 Aligned_cols=152 Identities=16% Similarity=0.218 Sum_probs=97.7
Q ss_pred CCceEEecCCHHHHHHHHhh---C-CCcEEEeccCcceeeeeeccccCceEEecCCcccccceeecCCcEEEcccccHHH
Q 001052 269 GGLKWYRPLKLQHLLELKSK---Y-PDSKLLVGNTEVGIEMRLKRMQYQVLISVTHVPELNVLNVKDDGLEIGAAVRLTE 344 (1172)
Q Consensus 269 ~~~~~~~P~sl~eal~ll~~---~-~~a~lvaGgTdl~v~~k~~~~~~~~lIdl~~v~EL~~I~~~~~~l~IGA~vTl~~ 344 (1172)
...-|+.|.|.+|+.++++- + -...+++|||.+.+. .+. ....+|++++ |+.|+.+++.+++||++++.+
T Consensus 36 ~A~~~v~p~~~edv~~~v~~a~~~~ip~~vlGgGSNll~~--d~g-~~GvvI~l~~---l~~i~~~~~~v~v~aG~~~~~ 109 (307)
T PRK13906 36 NADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIR--EGG-IRGIVISLLS---LDHIEVSDDAIIAGSGAAIID 109 (307)
T ss_pred eeEEEEEcCCHHHHHHHHHHHHHcCCCEEEEcCceeEeec--CCC-cceEEEEecC---ccceEEeCCEEEEECCCcHHH
Confidence 34568999999998887653 2 247789999998753 111 1367899866 677777778999999999999
Q ss_pred HHHHHHHhhhcCCCCccchHHHHHHHHHHhccccccccccccccccc-cCCCC-ChhHHHHhcCCEEEEEeCCCCeEEEe
Q 001052 345 LLKMFRKVVTERPAHETSSCKAFIEQIKWFAGTQIKNVASVGGNICT-ASPIS-DLNPLWMASGAKFHIVDCKGNIRTTM 422 (1172)
Q Consensus 345 l~~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~-asp~s-D~~~~Llal~A~v~l~s~~g~~R~vp 422 (1172)
|.+.+.+. .+. .+ ...++ =-|||||++.+ +.-.+ ++.=.++ .|++...+|..++++
T Consensus 110 l~~~~~~~--Gl~--------Gl----E~~~g----IPGtVGGav~mNaGayGg~i~D~l~----~v~vv~~~G~~~~~~ 167 (307)
T PRK13906 110 VSRVARDY--ALT--------GL----EFACG----IPGSIGGAVYMNAGAYGGEVKDCID----YALCVNEQGSLIKLT 167 (307)
T ss_pred HHHHHHHc--CCc--------cc----hhhcC----CCccHhHHHHhhCCcchhhhhhhee----EEEEEeCCCCEEEEE
Confidence 99874321 110 01 11111 13689999864 33221 2221111 345555667688899
Q ss_pred hHhhhcccccccCCCC-eEEEEEEccC
Q 001052 423 AEEFFLGYRKVDLTSG-EILLSIFLPW 448 (1172)
Q Consensus 423 l~dF~~g~~~t~L~~~-Eil~~I~iP~ 448 (1172)
-+|..-+||.+.++.+ .||+++.+-.
T Consensus 168 ~~e~~f~YR~S~~~~~~~ii~~~~~~l 194 (307)
T PRK13906 168 TKELELDYRNSIIQKEHLVVLEAAFTL 194 (307)
T ss_pred HHHccCcCCcccCCCCCEEEEEEEEEE
Confidence 9997779998887753 3666655544
No 67
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=95.85 E-value=0.011 Score=76.72 Aligned_cols=104 Identities=20% Similarity=0.344 Sum_probs=75.1
Q ss_pred EEEEECCEEEEecCCCCCCcHHHHHhhCCCCCcccCcc------CCCCCceEEEEeccccCCCcccceeecccccchhcc
Q 001052 21 AILYVNGLRKVLPDGLAHLTLLEYLRDIGLTGTKLGCG------EGGCGACTVMVSRYDKKSKKCVHCAVNACLAPLYSL 94 (1172)
Q Consensus 21 i~~~~Ng~~~~~~~~~p~~~L~~~LR~~~l~g~k~gC~------~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~ 94 (1172)
|+|+|||+++++ .+++||++.++..|..-.. =|- .|.|.-|.|.+++.. +.+.||.+|+.
T Consensus 2 ~~~~idg~~~~~---~~g~~il~a~~~~g~~ip~-~c~~~~~~~~~~C~~C~v~v~~~~--------~~~~aC~~~~~-- 67 (776)
T PRK09129 2 VEIEIDGKKVEV---PEGSMVIEAADKAGIYIPR-FCYHKKLSIAANCRMCLVEVEKAP--------KPLPACATPVT-- 67 (776)
T ss_pred eEEEECCEEEEe---CCCCHHHHHHHHcCCCCCc-ccCCCCCCCCCCcceeEEEECCCC--------CcCcccCCCCC--
Confidence 789999999876 5899999999986544321 243 589999999998621 35899999987
Q ss_pred CCceEEEeecccCCCCCcCHHHHHHHHhCCCCCCCCchHHHHHHHH
Q 001052 95 EGMHVITVEGVGNRKHGLHPIQESLVRSHGSQCGFCTPGFIMSMYS 140 (1172)
Q Consensus 95 ~g~~i~T~Egl~~~~~~~~~iq~a~~~~~~~qCG~CtpG~vm~~~~ 140 (1172)
+|..|.|-.--- .+.-.-+-+.+...|--.|..|.-+--.-+-.
T Consensus 68 ~gm~v~t~~~~~--~~~r~~~l~~ll~~h~~~C~~c~~~g~C~Lq~ 111 (776)
T PRK09129 68 DGMKVFTRSEKA--LKAQKSVMEFLLINHPLDCPICDQGGECQLQD 111 (776)
T ss_pred CCCEEEcCCHHH--HHHHHHHHHHHHhcCCCCcccCCCCCCCHHHH
Confidence 799999832110 11224456677888999999999876544433
No 68
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=95.82 E-value=0.015 Score=70.81 Aligned_cols=104 Identities=17% Similarity=0.152 Sum_probs=77.8
Q ss_pred ceEEecCCHHHHHHHHhhC--CC--cEEEeccCcceeeeeeccccCceEEecCCcccccceeecCCcEEEcccccHHHHH
Q 001052 271 LKWYRPLKLQHLLELKSKY--PD--SKLLVGNTEVGIEMRLKRMQYQVLISVTHVPELNVLNVKDDGLEIGAAVRLTELL 346 (1172)
Q Consensus 271 ~~~~~P~sl~eal~ll~~~--~~--a~lvaGgTdl~v~~k~~~~~~~~lIdl~~v~EL~~I~~~~~~l~IGA~vTl~~l~ 346 (1172)
..+..|+|.+|+.++++.- .+ ..+.+|||++.-...-. . .++||++++..+..|..++..+++.+++++.+|.
T Consensus 33 ~~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~~~~~-~--gvvl~l~~mn~i~~id~~~~~~~v~aGv~l~~l~ 109 (459)
T COG0277 33 LAVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVPD-G--GVVLDLSRLNRILEIDPEDGTATVQAGVTLEDLE 109 (459)
T ss_pred CEEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCccccccCC-C--cEEEEchhhcchhccCcCCCEEEEcCCccHHHHH
Confidence 4688999999998877653 12 66789999985532211 1 7899999976666667778999999999999999
Q ss_pred HHHHHhhhcCCCCccchHHHHHHHHHHhccccccccccccccccccCC
Q 001052 347 KMFRKVVTERPAHETSSCKAFIEQIKWFAGTQIKNVASVGGNICTASP 394 (1172)
Q Consensus 347 ~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp 394 (1172)
+.+.+.=..++ ..|+.++.+||||||++.+.
T Consensus 110 ~~l~~~G~~~p-----------------~~p~s~~~~tIGG~ia~~~~ 140 (459)
T COG0277 110 KALAPHGLFLP-----------------VDPSSSGTATIGGNIATNAG 140 (459)
T ss_pred HHHHHcCCccC-----------------CCccccccceEccchhcCCC
Confidence 98764322211 36777799999999998643
No 69
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=95.74 E-value=0.012 Score=74.17 Aligned_cols=97 Identities=24% Similarity=0.432 Sum_probs=71.2
Q ss_pred EEECCEEEEecCCCCCCcHHHHHhhCCCCCcccCcc------CCCCCceEEEEeccccCCCcccceeecccccchhccCC
Q 001052 23 LYVNGLRKVLPDGLAHLTLLEYLRDIGLTGTKLGCG------EGGCGACTVMVSRYDKKSKKCVHCAVNACLAPLYSLEG 96 (1172)
Q Consensus 23 ~~~Ng~~~~~~~~~p~~~L~~~LR~~~l~g~k~gC~------~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g 96 (1172)
|+|||+++++ .+++||++.+++.|+.-. .=|. .|.|.-|.|.+++.. + +.+.||.+|+. +|
T Consensus 1 ~~idg~~~~~---~~g~~il~a~~~~gi~ip-~~C~~~~l~~~g~Cr~C~v~v~g~~----~---~~~~aC~~~~~--~g 67 (603)
T TIGR01973 1 IFIDGKELEV---PKGTTVLQACLSAGIEIP-RFCYHEKLSIAGNCRMCLVEVEKFP----D---KPVASCATPVT--DG 67 (603)
T ss_pred CEECCEEEEe---CCCCHHHHHHHHcCCCcc-ccCCCCCCCCCCccccCEEEECCCC----C---CcccccCCCCC--CC
Confidence 5899999875 589999999998765433 3465 899999999998621 1 26899999987 79
Q ss_pred ceEEEeecccCCCCCcCHHHHHHHHhCCCCCCCCchHH
Q 001052 97 MHVITVEGVGNRKHGLHPIQESLVRSHGSQCGFCTPGF 134 (1172)
Q Consensus 97 ~~i~T~Egl~~~~~~~~~iq~a~~~~~~~qCG~CtpG~ 134 (1172)
..|.|-.-- -...-+-+.+.+...|---|..|.-+-
T Consensus 68 m~v~t~~~~--~~~~r~~~~e~ll~~h~~dC~~C~~~g 103 (603)
T TIGR01973 68 MKISTNSEK--VKKAREGVMEFLLINHPLDCPICDQGG 103 (603)
T ss_pred CEEEeCCHH--HHHHHHHHHHHHHhcCCCCCCcCCCCC
Confidence 999982100 001123456677778999999999763
No 70
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=95.68 E-value=0.023 Score=72.46 Aligned_cols=94 Identities=28% Similarity=0.398 Sum_probs=70.7
Q ss_pred EEEEECCEEEEecCCCCCCcHHHHHhhCCCCCcccCcc------CCCCCceEEEEeccccCCCcccceeecccccchhcc
Q 001052 21 AILYVNGLRKVLPDGLAHLTLLEYLRDIGLTGTKLGCG------EGGCGACTVMVSRYDKKSKKCVHCAVNACLAPLYSL 94 (1172)
Q Consensus 21 i~~~~Ng~~~~~~~~~p~~~L~~~LR~~~l~g~k~gC~------~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~ 94 (1172)
++++|||+++++ ++++|+|+..|..|+.=.. =|- .|.|.-|.|.+.+.. .+.+.||.+|+.
T Consensus 2 ~~~~Idg~~v~v---~~g~til~a~~~~gi~IP~-lCy~~~l~~~g~Cr~ClVev~~~~-------~~~~~sC~~~v~-- 68 (687)
T PRK09130 2 VKLKVDGKEIEV---PDGYTLLQACEAAGAEIPR-FCYHERLSIAGNCRMCLVEVKGGP-------PKPVASCAMPVG-- 68 (687)
T ss_pred eEEEECCEEEEe---CCCCHHHHHHHHcCCCcCc-ccCCCCCCCCCCCCCCEEEECCCC-------CCcccccCCCCC--
Confidence 689999998875 5899999999987766433 353 799999999997510 157999999987
Q ss_pred CCceEEEeecccCCCCCc----CHHHHHHHHhCCCCCCCCchH
Q 001052 95 EGMHVITVEGVGNRKHGL----HPIQESLVRSHGSQCGFCTPG 133 (1172)
Q Consensus 95 ~g~~i~T~Egl~~~~~~~----~~iq~a~~~~~~~qCG~CtpG 133 (1172)
+|..|.|= .+.. .-+.+-+...|-.-|..|.-|
T Consensus 69 ~gm~v~T~------s~~v~~~r~~~le~ll~~Hp~dC~~C~~~ 105 (687)
T PRK09130 69 EGMVIFTN------TPMVKKAREGVMEFLLINHPLDCPICDQG 105 (687)
T ss_pred CCCEEEeC------CHHHHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 79999982 2222 335566777788888888753
No 71
>PLN03136 Ferredoxin; Provisional
Probab=95.50 E-value=0.022 Score=58.15 Aligned_cols=48 Identities=15% Similarity=0.333 Sum_probs=37.6
Q ss_pred EEEEEECCEEEEecCCCCCCcHHHHHhhCCCCCcccCccCCCCCceEEEE
Q 001052 20 EAILYVNGLRKVLPDGLAHLTLLEYLRDIGLTGTKLGCGEGGCGACTVMV 69 (1172)
Q Consensus 20 ~i~~~~Ng~~~~~~~~~p~~~L~~~LR~~~l~g~k~gC~~G~CGaCtV~~ 69 (1172)
+|.|.-++...+++ ++++++|||.+++.|+. ...+|+.|.||.|.+-+
T Consensus 56 ~V~l~~~~~~~~~~-~~~g~tILdAa~~~Gi~-lp~sCr~G~CGtC~~~l 103 (148)
T PLN03136 56 KVKFITPEGEQEVE-CEEDVYVLDAAEEAGID-LPYSCRAGSCSSCAGKV 103 (148)
T ss_pred EEEEecCCCcEEEE-eCCCCcHHHHHHHcCCC-CCcCCCCccCCCCEEEE
Confidence 34443344445665 78999999999999855 78899999999999977
No 72
>PTZ00038 ferredoxin; Provisional
Probab=95.42 E-value=0.031 Score=59.20 Aligned_cols=48 Identities=21% Similarity=0.416 Sum_probs=37.5
Q ss_pred EEEEEE-CCEEEEecCCCCCCcHHHHHhhCCCCCcccCccCCCCCceEEEEe
Q 001052 20 EAILYV-NGLRKVLPDGLAHLTLLEYLRDIGLTGTKLGCGEGGCGACTVMVS 70 (1172)
Q Consensus 20 ~i~~~~-Ng~~~~~~~~~p~~~L~~~LR~~~l~g~k~gC~~G~CGaCtV~~~ 70 (1172)
.|+|.+ +| ..+++ +.++++||+.|++.|+ ....+|+.|.||.|.|-+-
T Consensus 97 ~Vt~~~~~g-~~~~~-v~~geTILdAae~aGI-~lp~sCr~G~CGtCkvrV~ 145 (191)
T PTZ00038 97 NITLQTPDG-EKVIE-CDEDEYILDAAERQGV-ELPYSCRGGSCSTCAAKLL 145 (191)
T ss_pred EEEEEeCCC-cEEEE-eCCCCcHHHHHHHcCC-CCCcCCCCccCCCCEeEEe
Confidence 455543 34 24454 6789999999999987 6889999999999999773
No 73
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=95.36 E-value=0.02 Score=66.95 Aligned_cols=47 Identities=26% Similarity=0.408 Sum_probs=40.8
Q ss_pred EEEEE---CCEEEEecCCCCCCcHHHHHhhCCCCCcccCccCCCCCceEEEE
Q 001052 21 AILYV---NGLRKVLPDGLAHLTLLEYLRDIGLTGTKLGCGEGGCGACTVMV 69 (1172)
Q Consensus 21 i~~~~---Ng~~~~~~~~~p~~~L~~~LR~~~l~g~k~gC~~G~CGaCtV~~ 69 (1172)
.+++| ||+.+.++ +.++.|||+.|++.|+ ....+|++|.||.|.|-+
T Consensus 3 ~~v~~~~~~~~~~~~~-~~~g~tlL~a~~~~g~-~~p~~C~~G~Cg~C~~~~ 52 (340)
T PRK11872 3 HKVALSFADGKTLFFP-VGKDELLLDAALRNGI-NLPLDCREGVCGTCQGRC 52 (340)
T ss_pred eEEEEEecCCcEEEEE-eCCCCcHHHHHHHcCC-CCcCCCCCeECCCCEEEE
Confidence 45666 99988875 8899999999999986 577899999999999977
No 74
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=95.22 E-value=0.11 Score=62.49 Aligned_cols=100 Identities=14% Similarity=0.105 Sum_probs=66.6
Q ss_pred EecCCHHHHHHHHhh---CC-CcEEEeccCcceeeeeeccccCceEEecCCcccccceeecCCcEEEcccccHHHHHHHH
Q 001052 274 YRPLKLQHLLELKSK---YP-DSKLLVGNTEVGIEMRLKRMQYQVLISVTHVPELNVLNVKDDGLEIGAAVRLTELLKMF 349 (1172)
Q Consensus 274 ~~P~sl~eal~ll~~---~~-~a~lvaGgTdl~v~~k~~~~~~~~lIdl~~v~EL~~I~~~~~~l~IGA~vTl~~l~~~l 349 (1172)
++|+|.+|+.++++. +. ...+.+|||++.-.. . ......+||++++...-.|..++..++++|++++.+|.+.+
T Consensus 2 v~P~s~eev~~iv~~a~~~~i~v~~~G~Gt~~~g~~-~-~~~~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~~l 79 (413)
T TIGR00387 2 VFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGA-L-PEEGGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQAV 79 (413)
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCc-c-CCCCeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHHHH
Confidence 468999998887653 32 477889999874110 0 01235788987755444445556889999999999999987
Q ss_pred HHhhhcCCCCccchHHHHHHHHHHhcccccccccccccccccc
Q 001052 350 RKVVTERPAHETSSCKAFIEQIKWFAGTQIKNVASVGGNICTA 392 (1172)
Q Consensus 350 ~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~a 392 (1172)
.+.=-.++ -.++-...+||||+|++.
T Consensus 80 ~~~gl~~~-----------------~~p~s~~~~tiGG~ia~n 105 (413)
T TIGR00387 80 EEHNLFYP-----------------PDPSSQISSTIGGNIAEN 105 (413)
T ss_pred HHcCCeeC-----------------CCCcccccceehhhhhcC
Confidence 54211110 134445679999999864
No 75
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=95.21 E-value=0.046 Score=66.29 Aligned_cols=107 Identities=22% Similarity=0.183 Sum_probs=69.8
Q ss_pred CceEEecCCHHHHHHHHhh---CC-CcEEEeccCccee-eeeec--cccCceEEecCCcccccceeecCCcEEEcccccH
Q 001052 270 GLKWYRPLKLQHLLELKSK---YP-DSKLLVGNTEVGI-EMRLK--RMQYQVLISVTHVPELNVLNVKDDGLEIGAAVRL 342 (1172)
Q Consensus 270 ~~~~~~P~sl~eal~ll~~---~~-~a~lvaGgTdl~v-~~k~~--~~~~~~lIdl~~v~EL~~I~~~~~~l~IGA~vTl 342 (1172)
..-.+.|.|.+|..++++- +. -...-+|||+|.= ..-.+ .....++||+.++..+..|. ++..+...+++|+
T Consensus 39 P~AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAvP~~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePGVtl 117 (564)
T PRK11183 39 ALAVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGSTPNGNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPGTTL 117 (564)
T ss_pred CCEEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcccCCCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCCCcH
Confidence 3467899999999887764 32 2445689998822 11111 12235799999877666666 4567999999999
Q ss_pred HHHHHHHHHhhhcCCCCccchHHHHHHHHHHhccccccccccccccccccC
Q 001052 343 TELLKMFRKVVTERPAHETSSCKAFIEQIKWFAGTQIKNVASVGGNICTAS 393 (1172)
Q Consensus 343 ~~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~as 393 (1172)
.+|.+.+++.=.. ++ ..++|.+|- +||||||++.+
T Consensus 118 ~~LeeaLk~~Gl~-p~-------------sd~GSS~IG--asIGGnIAtNA 152 (564)
T PRK11183 118 YQLEKALKPLGRE-PH-------------SVIGSSCIG--ASVIGGICNNS 152 (564)
T ss_pred HHHHHHHHHhCCC-CC-------------CcccccccC--CCCccceEECC
Confidence 9999987653111 10 012343333 49999999764
No 76
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=95.18 E-value=0.16 Score=59.03 Aligned_cols=154 Identities=16% Similarity=0.161 Sum_probs=100.7
Q ss_pred CccccCCCCceEEecCCHHHHHHHHhhC----CCcEEEeccCcceeeeeeccccCceEEecCCcccccceee---cCC--
Q 001052 262 PLNLSGFGGLKWYRPLKLQHLLELKSKY----PDSKLLVGNTEVGIEMRLKRMQYQVLISVTHVPELNVLNV---KDD-- 332 (1172)
Q Consensus 262 ~~~~~~~~~~~~~~P~sl~eal~ll~~~----~~a~lvaGgTdl~v~~k~~~~~~~~lIdl~~v~EL~~I~~---~~~-- 332 (1172)
++.+++ .-..|+.|+|.+|+.++++.. -...+++||+.+++.- + .+..+|-+ ++ +.++. +++
T Consensus 14 t~riGG-~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSNlLv~D--~--~~g~vI~~-~~---~~~~~~~~~~~~~ 84 (334)
T PRK00046 14 TFGIDA-RARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNVLFTE--D--FDGTVLLN-RI---KGIEVLSEDDDAW 84 (334)
T ss_pred eeccCc-EEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEEEEECC--C--CCEEEEEe-cC---CceEEEecCCCeE
Confidence 456666 455788999999999888643 2478899999998842 2 34566765 34 44444 333
Q ss_pred cEEEcccccHHHHHHHHHHhhhcCCCCccchHHHHHHHHHHhcccccccccccccccc-ccCC----CCChhHHHHhcCC
Q 001052 333 GLEIGAAVRLTELLKMFRKVVTERPAHETSSCKAFIEQIKWFAGTQIKNVASVGGNIC-TASP----ISDLNPLWMASGA 407 (1172)
Q Consensus 333 ~l~IGA~vTl~~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~-~asp----~sD~~~~Llal~A 407 (1172)
.+++||++.+.+|.....+ ..+ .. +.++++.+ |||||-++ |+.- ++|.+ -
T Consensus 85 ~v~a~AG~~~~~l~~~~~~--~gl--------~G----lE~l~gIP----GTVGGAv~mNaGayG~ei~d~l-------~ 139 (334)
T PRK00046 85 YLHVGAGENWHDLVLWTLQ--QGM--------PG----LENLALIP----GTVGAAPIQNIGAYGVELKDVC-------D 139 (334)
T ss_pred EEEEEcCCcHHHHHHHHHH--cCc--------hh----hHHhcCCC----cchhHHHHhcCCcCcccHheeE-------E
Confidence 6999999999999987432 111 11 22233322 67777764 3321 34443 2
Q ss_pred EEEEEeCC-CCeEEEehHhhhcccccccCCC----CeEEEEEEccCC
Q 001052 408 KFHIVDCK-GNIRTTMAEEFFLGYRKVDLTS----GEILLSIFLPWT 449 (1172)
Q Consensus 408 ~v~l~s~~-g~~R~vpl~dF~~g~~~t~L~~----~Eil~~I~iP~~ 449 (1172)
+|++...+ |..+++.-+|..-+||.+.++. +.||+++.+...
T Consensus 140 ~V~v~d~~~g~~~~~~~~e~~f~YR~S~f~~~~~~~~iVl~a~f~L~ 186 (334)
T PRK00046 140 YVEALDLATGEFVRLSAAECRFGYRDSIFKHEYPDRYAITAVGFRLP 186 (334)
T ss_pred EEEEEECCCCcEEEEEHHHcCcccccccCCCCCcCCEEEEEEEEEec
Confidence 46666655 6588899999888999888875 348887777665
No 77
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=95.18 E-value=0.062 Score=65.91 Aligned_cols=102 Identities=8% Similarity=0.111 Sum_probs=72.1
Q ss_pred CceEEecCCHHHHHHHHhhC----CCcEEEeccCcceeeeeeccccCceEEecCCcccccceeecCCcEEEcccccHHHH
Q 001052 270 GLKWYRPLKLQHLLELKSKY----PDSKLLVGNTEVGIEMRLKRMQYQVLISVTHVPELNVLNVKDDGLEIGAAVRLTEL 345 (1172)
Q Consensus 270 ~~~~~~P~sl~eal~ll~~~----~~a~lvaGgTdl~v~~k~~~~~~~~lIdl~~v~EL~~I~~~~~~l~IGA~vTl~~l 345 (1172)
...+++|+|.+|+.++++.. -..++++||++..-.. .....+||++++..+-.|..+...++++|++++.+|
T Consensus 62 p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~GsGhS~sg~a----~t~g~lldL~~ln~Vl~vD~~~~tVtV~AG~~l~~L 137 (541)
T TIGR01676 62 TRTFHQPEAIEELEGIVKQANEKKARIRPVGSGLSPNGIG----LSRAGMVNLALMDKVLEVDEEKKRVRVQAGIRVQQL 137 (541)
T ss_pred cceEECCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCcc----cCCCeEEEhhhCCCCEEEcCCCCEEEEcCCCCHHHH
Confidence 35689999999999987664 2478888988763311 112458999988877677777889999999999999
Q ss_pred HHHHHHhhhcCCCCccchHHHHHHHHHHhccccccccccccccccccC
Q 001052 346 LKMFRKVVTERPAHETSSCKAFIEQIKWFAGTQIKNVASVGGNICTAS 393 (1172)
Q Consensus 346 ~~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~as 393 (1172)
.+.|.+.=- .+.+..--+..||||+|+++.
T Consensus 138 ~~~L~~~Gl------------------al~n~gsi~~~TIGGaiatgt 167 (541)
T TIGR01676 138 VDAIKEYGI------------------TLQNFASIREQQIGGIIQVGA 167 (541)
T ss_pred HHHHHHcCC------------------EeccCCCCCCceEccccccCC
Confidence 987643210 011212224578999999864
No 78
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=95.10 E-value=0.063 Score=64.90 Aligned_cols=102 Identities=16% Similarity=0.205 Sum_probs=68.1
Q ss_pred ceEEecCCHHHHHHHHhhC---C-CcEEEeccCcceeeeeeccccCceEEecCCcccccceeecCCcEEEcccccHHHHH
Q 001052 271 LKWYRPLKLQHLLELKSKY---P-DSKLLVGNTEVGIEMRLKRMQYQVLISVTHVPELNVLNVKDDGLEIGAAVRLTELL 346 (1172)
Q Consensus 271 ~~~~~P~sl~eal~ll~~~---~-~a~lvaGgTdl~v~~k~~~~~~~~lIdl~~v~EL~~I~~~~~~l~IGA~vTl~~l~ 346 (1172)
...++|+|.+|+.++++.. . ..++++||++..-. ......+||++++..+-.|..+.+.++++|++++.+|.
T Consensus 16 ~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~GhS~s~~----~~~~gvvIdl~~l~~i~~id~~~~~vtV~aG~~l~~L~ 91 (438)
T TIGR01678 16 EVYYQPTSVEEVREVLALAREQKKKVKVVGGGHSPSDI----ACTDGFLIHLDKMNKVLQFDKEKKQITVEAGIRLYQLH 91 (438)
T ss_pred CEEEecCCHHHHHHHHHHHHHCCCeEEEECCCCCCCCC----ccCCeEEEEhhhcCCceEEcCCCCEEEEcCCCCHHHHH
Confidence 4689999999999887643 2 46888888554211 11235899998866555555556789999999999999
Q ss_pred HHHHHhhhcCCCCccchHHHHHHHHHHhccccccccccccccccccCC
Q 001052 347 KMFRKVVTERPAHETSSCKAFIEQIKWFAGTQIKNVASVGGNICTASP 394 (1172)
Q Consensus 347 ~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp 394 (1172)
+.|.+.=-. +...++ =+..||||.|.++..
T Consensus 92 ~~L~~~Gl~---------------l~~~g~---~~~~TvGG~iatg~h 121 (438)
T TIGR01678 92 EQLDEHGYS---------------MSNLGS---ISEVSVAGIISTGTH 121 (438)
T ss_pred HHHHHcCCE---------------ecCCCC---CCCceeeehhcCCCC
Confidence 886432100 111121 145899998877654
No 79
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=95.09 E-value=0.11 Score=64.13 Aligned_cols=103 Identities=11% Similarity=0.198 Sum_probs=67.9
Q ss_pred CceEEecCCHHHHHHHHhhC----CCcEEEeccCcceeeeeeccccCceEEecCCcccccceeecCCcEEEcccccHHHH
Q 001052 270 GLKWYRPLKLQHLLELKSKY----PDSKLLVGNTEVGIEMRLKRMQYQVLISVTHVPELNVLNVKDDGLEIGAAVRLTEL 345 (1172)
Q Consensus 270 ~~~~~~P~sl~eal~ll~~~----~~a~lvaGgTdl~v~~k~~~~~~~~lIdl~~v~EL~~I~~~~~~l~IGA~vTl~~l 345 (1172)
...+++|+|.+|+.++++.. -..+++++|++..-.. .....+||++++..+-.|..+.+.++++|++++.+|
T Consensus 97 p~~vv~P~S~eEV~~iV~~A~~~g~~VrvvGsGhS~~~l~----~td~glIdL~~l~~Il~vD~e~~~VtV~AG~~l~~L 172 (573)
T PLN02465 97 TRRYHQPESLEELEDIVKEAHEKGRRIRPVGSGLSPNGLA----FSREGMVNLALMDKVLEVDKEKKRVTVQAGARVQQV 172 (573)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCee----eCCCEEEECcCCCCcEEEeCCCCEEEEccCCCHHHH
Confidence 35689999999999887653 2478888887432111 123457898886554445555678999999999999
Q ss_pred HHHHHHhhhcCCCCccchHHHHHHHHHHhccccccccccccccccccCC
Q 001052 346 LKMFRKVVTERPAHETSSCKAFIEQIKWFAGTQIKNVASVGGNICTASP 394 (1172)
Q Consensus 346 ~~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~asp 394 (1172)
.+.|.+.= | ++...++ | +.+||||.|.++..
T Consensus 173 ~~~L~~~G-------------L--al~n~g~--I-~~~TIGGaIstGtH 203 (573)
T PLN02465 173 VEALRPHG-------------L--TLQNYAS--I-REQQIGGFIQVGAH 203 (573)
T ss_pred HHHHHHcC-------------C--EeccCCC--C-CCeeecchhhCCCC
Confidence 98864321 0 0111222 1 35799999977644
No 80
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=94.88 E-value=0.039 Score=72.47 Aligned_cols=102 Identities=23% Similarity=0.352 Sum_probs=73.6
Q ss_pred EEEEECCEEEEecCCCCCCcHHHHHhhCCCCCcccCcc------CCCCCceEEEEeccccCCCcccceeecccccchhcc
Q 001052 21 AILYVNGLRKVLPDGLAHLTLLEYLRDIGLTGTKLGCG------EGGCGACTVMVSRYDKKSKKCVHCAVNACLAPLYSL 94 (1172)
Q Consensus 21 i~~~~Ng~~~~~~~~~p~~~L~~~LR~~~l~g~k~gC~------~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~ 94 (1172)
++|+|||+.+++ .+++|||+.++..|+. +-..|. .|.|+.|.|.+.+- +.++ ....+.||.+|+.
T Consensus 2 ~~i~idg~~~~~---~~g~til~a~~~~gi~-ip~~C~~~~~~~~G~C~~C~v~v~~g-~~~~--~~~~~~aC~~~v~-- 72 (847)
T PRK08166 2 ATIHVDGKEYEV---NGADNLLEACLSLGID-IPYFCWHPALGSVGACRQCAVKQYQN-PEDT--RGRLVMSCMTPAT-- 72 (847)
T ss_pred eEEEECCEEEEe---CCCCHHHHHHHHcCCC-CCccccCCCCCCCCccCCCeEEEeec-CccC--CCCcccCcCCCCC--
Confidence 679999999765 5899999999987754 336787 69999999998420 1011 1246889999987
Q ss_pred CCceEEEeecccCCCCCcCHHHHHHHHhCCCCCCCCchH
Q 001052 95 EGMHVITVEGVGNRKHGLHPIQESLVRSHGSQCGFCTPG 133 (1172)
Q Consensus 95 ~g~~i~T~Egl~~~~~~~~~iq~a~~~~~~~qCG~CtpG 133 (1172)
+|..|.|-.--- ...-.-+.+-+...|-..|..|.-|
T Consensus 73 ~gm~v~t~~~~~--~~~r~~~~e~ll~~hp~dc~~c~~~ 109 (847)
T PRK08166 73 DGTFISIDDPEA--KAFRASVVEWLMTNHPHDCPVCEEG 109 (847)
T ss_pred CCCEEEeCCHHH--HHHHHHHHHHHHhcCCCCCCccCCC
Confidence 699998842110 1122447778888999999999865
No 81
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=94.81 E-value=0.13 Score=60.28 Aligned_cols=155 Identities=15% Similarity=0.200 Sum_probs=95.0
Q ss_pred CCccccCCCCceEEecCCHHHHHHHHhhC----CCcEEEeccCcceeeeeeccccCceEEecCCcccccceeec--CCcE
Q 001052 261 NPLNLSGFGGLKWYRPLKLQHLLELKSKY----PDSKLLVGNTEVGIEMRLKRMQYQVLISVTHVPELNVLNVK--DDGL 334 (1172)
Q Consensus 261 ~~~~~~~~~~~~~~~P~sl~eal~ll~~~----~~a~lvaGgTdl~v~~k~~~~~~~~lIdl~~v~EL~~I~~~--~~~l 334 (1172)
.++.+++ .-..|+.|+|.+|+.++++.. -...+++||+.+.+. . .-.+..+|+++. +.|+.+ ++.+
T Consensus 25 tt~~iGg-~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSNlLv~--D-~g~~GvVI~l~~----~~i~i~~~~~~v 96 (363)
T PRK13903 25 TTLRVGG-PARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSNLVIA--D-DGFDGTVVRVAT----RGVTVDCGGGLV 96 (363)
T ss_pred cEeecCc-cceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCeeEeEC--C-CCccEEEEEeCC----CcEEEeCCCCEE
Confidence 3566666 455678999999999887532 247899999998752 1 113357888863 555555 6789
Q ss_pred EEcccccHHHHHHHHHHhhhcCCCCccchHHHHHHHHHHhccccccccccccccccc-cCC----CCChhHHHHhcCCEE
Q 001052 335 EIGAAVRLTELLKMFRKVVTERPAHETSSCKAFIEQIKWFAGTQIKNVASVGGNICT-ASP----ISDLNPLWMASGAKF 409 (1172)
Q Consensus 335 ~IGA~vTl~~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~-asp----~sD~~~~Llal~A~v 409 (1172)
++||++++.++...+.+. .+. . +...++. -|||||-+.. +.- ++|.+. .|
T Consensus 97 ~vgAG~~~~~l~~~a~~~--GL~--------G----lE~laGI----PGTVGGAv~mNaGayG~ei~D~l~-------sV 151 (363)
T PRK13903 97 RAEAGAVWDDVVARTVEA--GLG--------G----LECLSGI----PGSAGATPVQNVGAYGQEVSDTIT-------RV 151 (363)
T ss_pred EEEcCCCHHHHHHHHHHc--CCc--------c----ccccCCC----CcchhhHhhcCCChhHHHHhhhEe-------EE
Confidence 999999999999874321 110 0 0011111 2677776643 221 233332 35
Q ss_pred EEEeCC-CCeEEEehHhhhcccccccCCCC--eEEEEEEccC
Q 001052 410 HIVDCK-GNIRTTMAEEFFLGYRKVDLTSG--EILLSIFLPW 448 (1172)
Q Consensus 410 ~l~s~~-g~~R~vpl~dF~~g~~~t~L~~~--Eil~~I~iP~ 448 (1172)
++...+ |..++++-+|.+-+||.+.++.+ .||+++.+..
T Consensus 152 ~vvd~~~G~~~~~~~~el~f~YR~S~f~~~~~~IIl~a~f~L 193 (363)
T PRK13903 152 RLLDRRTGEVRWVPAADLGFGYRTSVLKHSDRAVVLEVEFQL 193 (363)
T ss_pred EEEECCCCEEEEEEHHHcceeccccccCCCCCEEEEEEEEEE
Confidence 555533 54778888888878887766542 3555555433
No 82
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=94.74 E-value=0.059 Score=54.69 Aligned_cols=84 Identities=20% Similarity=0.290 Sum_probs=57.2
Q ss_pred EEEEEE---CCEEEEecCCCCCCcHHHHHhhCCCCCcccCcc-CCCCCceEEEEec-c-ccC-----------C-C-ccc
Q 001052 20 EAILYV---NGLRKVLPDGLAHLTLLEYLRDIGLTGTKLGCG-EGGCGACTVMVSR-Y-DKK-----------S-K-KCV 80 (1172)
Q Consensus 20 ~i~~~~---Ng~~~~~~~~~p~~~L~~~LR~~~l~g~k~gC~-~G~CGaCtV~~~~-~-~~~-----------~-~-~~~ 80 (1172)
++++++ +|++.+++ ++++.+|++.|++.+.-+.-.-|| .|.||-|.|.|.. + +.. + . ...
T Consensus 35 ~v~I~~~~~dG~~~~v~-~~~G~sLLeal~~~~~i~i~~~CGG~g~CgtC~V~V~~g~~~~l~~~~~~E~~~L~~~~~~~ 113 (143)
T PTZ00490 35 KVKVCVKKRDGTHCDVE-VPVGMSLMHALRDVAKLDVEGTCNGCMQCATCHVYLSAASFKKLGGPSEEEEDVLAKALDVK 113 (143)
T ss_pred cEEEEEEcCCCCEEEEE-ECCCccHHHHHHHcCCCCccccCCCCCEeCCCEEEECCCccccCCCCChHHHHHhhccccCC
Confidence 444444 37778886 899999999999964456666788 8899999999954 1 000 0 0 112
Q ss_pred ceeecccccchhc-cCCceEEEeec
Q 001052 81 HCAVNACLAPLYS-LEGMHVITVEG 104 (1172)
Q Consensus 81 ~~~v~sCl~~~~~-~~g~~i~T~Eg 104 (1172)
-..-.||.+.+.. ++|-.|..-|-
T Consensus 114 ~gsRLaCQi~v~~~ldgl~V~vp~~ 138 (143)
T PTZ00490 114 ETSRLACQVDLTPEMDGLEVELPSY 138 (143)
T ss_pred CCcEEeeeEEEecCCCCEEEEeCcc
Confidence 2334899998874 67877775543
No 83
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=94.47 E-value=0.21 Score=57.29 Aligned_cols=157 Identities=12% Similarity=0.131 Sum_probs=97.7
Q ss_pred CCccccCCCCceEEecCCHHHHHHHHhhC----CCcEEEeccCcceeeeeeccccCceEEecCCcccccceeecCC--cE
Q 001052 261 NPLNLSGFGGLKWYRPLKLQHLLELKSKY----PDSKLLVGNTEVGIEMRLKRMQYQVLISVTHVPELNVLNVKDD--GL 334 (1172)
Q Consensus 261 ~~~~~~~~~~~~~~~P~sl~eal~ll~~~----~~a~lvaGgTdl~v~~k~~~~~~~~lIdl~~v~EL~~I~~~~~--~l 334 (1172)
.++.+++ .-..|+.|+|.+|+.++++-. -...+++||+.+.+.- .-....+|++++- .+ .+..+++ .+
T Consensus 13 tt~~iGg-~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vlG~GSNlL~~d---~g~~GvVI~l~~~-~~-~i~~~~~~~~v 86 (295)
T PRK14649 13 TSWRIGG-PARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNLLVRD---EGFDGLVARYRGQ-RW-ELHEHGDTAEV 86 (295)
T ss_pred cEeeeCc-eeeEEEEcCCHHHHHHHHHHHHHCCCCEEEEecceeEEEeC---CCcCeEEEEecCC-Cc-EEEEeCCcEEE
Confidence 3456666 456788899999998877532 2478899999997732 1123578887642 23 4455545 79
Q ss_pred EEcccccHHHHHHHHHHhhhcCCCCccchHHHHHHHHHHhccccccccccccccc-cccCC----CCChhHHHHhcCCEE
Q 001052 335 EIGAAVRLTELLKMFRKVVTERPAHETSSCKAFIEQIKWFAGTQIKNVASVGGNI-CTASP----ISDLNPLWMASGAKF 409 (1172)
Q Consensus 335 ~IGA~vTl~~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI-~~asp----~sD~~~~Llal~A~v 409 (1172)
++||++++.++...+.+. .+. .| ...++. =||+||-+ +|+.- ++|.+. +|
T Consensus 87 ~v~AG~~~~~l~~~~~~~--GL~--------Gl----E~l~GI----PGTvGGa~~mNaGayg~ei~d~l~-------~V 141 (295)
T PRK14649 87 WVEAGAPMAGTARRLAAQ--GWA--------GL----EWAEGL----PGTIGGAIYGNAGCYGGDTATVLI-------RA 141 (295)
T ss_pred EEEcCCcHHHHHHHHHHc--CCc--------cc----cccCCC----CcchhHHHHhhccccceEhheeEE-------EE
Confidence 999999999999874321 111 01 111111 26888844 45533 234332 35
Q ss_pred EEEeCCCCeEEEehHhhhcccccccCCC---------CeEEEEEEccC
Q 001052 410 HIVDCKGNIRTTMAEEFFLGYRKVDLTS---------GEILLSIFLPW 448 (1172)
Q Consensus 410 ~l~s~~g~~R~vpl~dF~~g~~~t~L~~---------~Eil~~I~iP~ 448 (1172)
++...+|..++++-+|.+-||+.+.++. +.+|+++.+..
T Consensus 142 ~~~~~~g~~~~~~~~el~f~YR~S~~~~~~~~~~~~~~~ii~~~~~~l 189 (295)
T PRK14649 142 WLLLNGSECVEWSVHDFAYGYRTSVLKQLRADGITWRPPLVLAARFRL 189 (295)
T ss_pred EEEeCCCCEEEEeHHHcCcccceeecccccccccccCCeEEEEEEEEE
Confidence 5556666688889999888898877664 23666655433
No 84
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=94.43 E-value=0.053 Score=53.36 Aligned_cols=48 Identities=19% Similarity=0.385 Sum_probs=40.8
Q ss_pred EEEE-EECCEEEEecCCCCCCcHHHHHhhCCCCCcccCccC-CCCCceEEEE
Q 001052 20 EAIL-YVNGLRKVLPDGLAHLTLLEYLRDIGLTGTKLGCGE-GGCGACTVMV 69 (1172)
Q Consensus 20 ~i~~-~~Ng~~~~~~~~~p~~~L~~~LR~~~l~g~k~gC~~-G~CGaCtV~~ 69 (1172)
+|+| ...|+..+++ +.++++|++.+++.|+. .-..|+. |.||.|-|.|
T Consensus 2 ~V~fi~~~G~~~~v~-~~~G~tLl~a~~~~gi~-i~~~CgG~g~C~tC~V~V 51 (117)
T PLN02593 2 SVTFVDKDGEERTVK-APVGMSLLEAAHENDIE-LEGACEGSLACSTCHVIV 51 (117)
T ss_pred EEEEEcCCCCEEEEE-ECCCCcHHHHHHHcCCC-CCccCCCcceeCCCEEEE
Confidence 4667 4789888886 78999999999998874 7778995 9999999999
No 85
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=94.28 E-value=0.068 Score=62.81 Aligned_cols=51 Identities=16% Similarity=0.268 Sum_probs=43.3
Q ss_pred eEEEEEECCEEEEecCCCCCCcHHHHHhhCCCCCcccCccCCCCCceEEEEe
Q 001052 19 KEAILYVNGLRKVLPDGLAHLTLLEYLRDIGLTGTKLGCGEGGCGACTVMVS 70 (1172)
Q Consensus 19 ~~i~~~~Ng~~~~~~~~~p~~~L~~~LR~~~l~g~k~gC~~G~CGaCtV~~~ 70 (1172)
-.++|+..|+.++.-.++++++||+.|.+.|+ -+..+|+.|.||+|.|-+-
T Consensus 263 ~~v~~~~~~~~~~~~~~~~~~slL~~~~~~gi-~~~~~C~~G~Cg~C~~~~~ 313 (352)
T TIGR02160 263 SKVTVTLDGRSTETSSLSRDESVLDAALRARP-DLPFACKGGVCGTCRAKVL 313 (352)
T ss_pred eEEEEEECCceEEEEecCCCCcHHHHHHHcCC-CCcCCCCCccCCCCEEEEe
Confidence 46888999998763237899999999999886 6889999999999999773
No 86
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=94.18 E-value=0.13 Score=63.26 Aligned_cols=103 Identities=13% Similarity=0.069 Sum_probs=71.0
Q ss_pred ceEEecCCHHHHHHHHhhC---C-CcEEEeccCcceeeeeeccccCceEEecCCcccccceeecCCcEEEcccccHHHHH
Q 001052 271 LKWYRPLKLQHLLELKSKY---P-DSKLLVGNTEVGIEMRLKRMQYQVLISVTHVPELNVLNVKDDGLEIGAAVRLTELL 346 (1172)
Q Consensus 271 ~~~~~P~sl~eal~ll~~~---~-~a~lvaGgTdl~v~~k~~~~~~~~lIdl~~v~EL~~I~~~~~~l~IGA~vTl~~l~ 346 (1172)
...++|.|.+|+.++++.. . ...+.+|||++.-.. -......+||++++.....|..++..++++|++|+.+|.
T Consensus 57 ~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG~Gt~~~gg~--~~~~~gividl~~ln~I~~id~~~~~v~VeaGv~~~~L~ 134 (499)
T PRK11230 57 LLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSGGA--LPLEKGVLLVMARFNRILDINPVGRRARVQPGVRNLAIS 134 (499)
T ss_pred CEEEeeCCHHHHHHHHHHHHHcCCeEEEECCCcCcCCCc--ccCCCcEEEEcccCCCceEEcCCCCEEEEcCCccHHHHH
Confidence 4578999999998877632 2 245678899872210 011235899999976666666677889999999999999
Q ss_pred HHHHHhhhcCCCCccchHHHHHHHHHHhcccccccccccccccccc
Q 001052 347 KMFRKVVTERPAHETSSCKAFIEQIKWFAGTQIKNVASVGGNICTA 392 (1172)
Q Consensus 347 ~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~a 392 (1172)
+.+.+.=..+ -..+.-...+||||||++.
T Consensus 135 ~~l~~~Gl~~-----------------~~~p~s~~~~tvGG~ia~n 163 (499)
T PRK11230 135 QAAAPHGLYY-----------------APDPSSQIACSIGGNVAEN 163 (499)
T ss_pred HHHHHcCCee-----------------CCCCCccccceEcceeccC
Confidence 9875421111 1234445679999999864
No 87
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=94.00 E-value=0.44 Score=53.81 Aligned_cols=154 Identities=18% Similarity=0.285 Sum_probs=98.1
Q ss_pred CccccCCCCceEEecCCHHHHHHHHhhCCCcEEEeccCcceeeeeeccccCceEEecCCcccccceeecCCcEEEccccc
Q 001052 262 PLNLSGFGGLKWYRPLKLQHLLELKSKYPDSKLLVGNTEVGIEMRLKRMQYQVLISVTHVPELNVLNVKDDGLEIGAAVR 341 (1172)
Q Consensus 262 ~~~~~~~~~~~~~~P~sl~eal~ll~~~~~a~lvaGgTdl~v~~k~~~~~~~~lIdl~~v~EL~~I~~~~~~l~IGA~vT 341 (1172)
++.+++ ..+|+.|.|.+|+.+++. -...+++||+.+++.- .-.+..+|-+++ .+..++.++ +.||++.
T Consensus 14 t~riGG--~A~~~~p~~~~~l~~~~~--~p~~vlG~GSNlL~~D---~g~~g~vI~l~~--~~~~~~~~~---~a~AG~~ 81 (273)
T PRK14651 14 TLGVGG--PAELWTVETHEQLAEATE--APYRVLGGGSNLLVSD---AGVPERVIRLGG--EFAEWDLDG---WVGGGVP 81 (273)
T ss_pred EeecCc--eEEEEecCCHHHHHHHHC--CCeEEEeceeEEEEcC---CCcceEEEEECC--cceeEeECC---EEECCCc
Confidence 455665 445545999999999883 3588999999998832 112356676643 255565543 7999999
Q ss_pred HHHHHHHHHHhhhcCCCCccchHHHHHHHHHHhccccccccccccccccc-cCC-CCChhHHHHhcCCEEEEEeCCCCeE
Q 001052 342 LTELLKMFRKVVTERPAHETSSCKAFIEQIKWFAGTQIKNVASVGGNICT-ASP-ISDLNPLWMASGAKFHIVDCKGNIR 419 (1172)
Q Consensus 342 l~~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~-asp-~sD~~~~Llal~A~v~l~s~~g~~R 419 (1172)
+.+|.....+ ..+. -+...++.+ |||||.+++ |.- -.++.=.+. .|++.. +|..+
T Consensus 82 ~~~l~~~~~~--~gl~------------GlE~l~gIP----GTVGGAv~mNaGayG~ei~d~l~----~V~~~~-~g~~~ 138 (273)
T PRK14651 82 LPGLVRRAAR--LGLS------------GLEGLVGIP----AQVGGAVKMNAGTRFGEMADALH----TVEIVH-DGGFH 138 (273)
T ss_pred HHHHHHHHHH--CCCc------------chhhhcCCC----cchhhHHHhhCCccccChheeEE----EEEEEE-CCCEE
Confidence 9999987432 1111 112222222 788887753 322 223332222 233334 45589
Q ss_pred EEehHhhhcccccccCCCCeEEEEEEccCCC
Q 001052 420 TTMAEEFFLGYRKVDLTSGEILLSIFLPWTR 450 (1172)
Q Consensus 420 ~vpl~dF~~g~~~t~L~~~Eil~~I~iP~~~ 450 (1172)
+++-+|..-+||.+.++.+.||+++.+...+
T Consensus 139 ~~~~~e~~f~YR~S~~~~~~iIl~a~f~l~~ 169 (273)
T PRK14651 139 QYSPDELGFGYRHSGLPPGHVVTRVRLKLRP 169 (273)
T ss_pred EEEHHHccccccccCCCCCEEEEEEEEEECC
Confidence 9999998889999998877788888876653
No 88
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=93.97 E-value=0.46 Score=55.37 Aligned_cols=85 Identities=18% Similarity=0.219 Sum_probs=58.4
Q ss_pred CCccccCCCCceEEecCCHHHHHHHHhhC----CCcEEEeccCcceeeeeeccccCceEEecCCccccccee-ecC-CcE
Q 001052 261 NPLNLSGFGGLKWYRPLKLQHLLELKSKY----PDSKLLVGNTEVGIEMRLKRMQYQVLISVTHVPELNVLN-VKD-DGL 334 (1172)
Q Consensus 261 ~~~~~~~~~~~~~~~P~sl~eal~ll~~~----~~a~lvaGgTdl~v~~k~~~~~~~~lIdl~~v~EL~~I~-~~~-~~l 334 (1172)
.++.+++ .-..|+.|.|.+|+.++++.. -...+++||+.+++.- .-.+..+|.+.++.++.... .++ ..|
T Consensus 22 tT~rIGG-~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSNlL~~D---~g~~G~VI~l~~~~~i~i~~~~~~~~~v 97 (354)
T PRK14648 22 CSFRIGG-AAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSNVLIAD---EGVPGLMLSLRRFRSLHTQTQRDGSVLV 97 (354)
T ss_pred ceeeeCc-EEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEeC---CCccEEEEEeCCcCceEEeeccCCcEEE
Confidence 3456666 556789999999999988633 1367899999998832 22346778775554442111 233 359
Q ss_pred EEcccccHHHHHHHH
Q 001052 335 EIGAAVRLTELLKMF 349 (1172)
Q Consensus 335 ~IGA~vTl~~l~~~l 349 (1172)
++||++.+.+|...+
T Consensus 98 ~agAG~~~~~Lv~~~ 112 (354)
T PRK14648 98 HAGAGLPVAALLAFC 112 (354)
T ss_pred EEEeCCcHHHHHHHH
Confidence 999999999998864
No 89
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.90 E-value=0.75 Score=52.09 Aligned_cols=159 Identities=22% Similarity=0.293 Sum_probs=101.5
Q ss_pred CccccCCCCceEEecCCHHHHHHHHhhCC----CcEEEeccCcceeeeeeccccCceEEecCCcccccceeecCCcEEEc
Q 001052 262 PLNLSGFGGLKWYRPLKLQHLLELKSKYP----DSKLLVGNTEVGIEMRLKRMQYQVLISVTHVPELNVLNVKDDGLEIG 337 (1172)
Q Consensus 262 ~~~~~~~~~~~~~~P~sl~eal~ll~~~~----~a~lvaGgTdl~v~~k~~~~~~~~lIdl~~v~EL~~I~~~~~~l~IG 337 (1172)
.+.+++ .-..|+.|++.+|+.++++..+ ...+++||+.+.+.- +. ...++|.+.... ...+..+++.|++|
T Consensus 14 tfriGg-~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSNlLv~d--~g-~~gvvi~~~~~~-~~~~~~~~~~i~a~ 88 (291)
T COG0812 14 TFRIGG-PAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNLLVRD--GG-IGGVVIKLGKLN-FIEIEGDDGLIEAG 88 (291)
T ss_pred eEecCc-ceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCceEEEec--CC-CceEEEEccccc-ceeeeccCCeEEEc
Confidence 345555 5568999999999988876643 478899999988732 11 223445444331 12233334499999
Q ss_pred ccccHHHHHHHHHHhhhcCCCCccchHHHHHHHHHHhcccccccccccccccc-cc----CCCCChhHHHHhcCCEEEEE
Q 001052 338 AAVRLTELLKMFRKVVTERPAHETSSCKAFIEQIKWFAGTQIKNVASVGGNIC-TA----SPISDLNPLWMASGAKFHIV 412 (1172)
Q Consensus 338 A~vTl~~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~-~a----sp~sD~~~~Llal~A~v~l~ 412 (1172)
|+..+.+|.....+ ..+ ..| |. .++. =||+||-+. |+ .-++|.+. +|++.
T Consensus 89 aG~~~~~l~~~~~~--~gl--------~Gl-E~---l~gI----PGsvGgav~mNaGAyG~Ei~d~~~-------~v~~l 143 (291)
T COG0812 89 AGAPWHDLVRFALE--NGL--------SGL-EF---LAGI----PGSVGGAVIMNAGAYGVEISDVLV-------SVEVL 143 (291)
T ss_pred cCCcHHHHHHHHHH--cCC--------cch-hh---hcCC----CcccchhhhccCcccccchheeEE-------EEEEE
Confidence 99999999987432 111 111 11 1111 156666542 22 22455553 46666
Q ss_pred eCCCCeEEEehHhhhcccccccCCCC-eEEEEEEccCCC
Q 001052 413 DCKGNIRTTMAEEFFLGYRKVDLTSG-EILLSIFLPWTR 450 (1172)
Q Consensus 413 s~~g~~R~vpl~dF~~g~~~t~L~~~-Eil~~I~iP~~~ 450 (1172)
..+|..+++.-+|.--|||...++.. -+++++.+...+
T Consensus 144 d~~G~~~~l~~~el~f~YR~S~f~~~~~vvl~v~f~L~~ 182 (291)
T COG0812 144 DRDGEVRWLSAEELGFGYRTSPFKKEYLVVLSVEFKLTK 182 (291)
T ss_pred cCCCCEEEEEHHHhCcccccCcCCCCCEEEEEEEEEeCC
Confidence 66887899999998889999999877 788888877664
No 90
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=93.85 E-value=0.069 Score=62.30 Aligned_cols=49 Identities=22% Similarity=0.273 Sum_probs=38.1
Q ss_pred EEEEEECCEEEEecCCCCCCcHHHHHhhCCCCCcccCccCCCCCceEEEEe
Q 001052 20 EAILYVNGLRKVLPDGLAHLTLLEYLRDIGLTGTKLGCGEGGCGACTVMVS 70 (1172)
Q Consensus 20 ~i~~~~Ng~~~~~~~~~p~~~L~~~LR~~~l~g~k~gC~~G~CGaCtV~~~ 70 (1172)
.+++++++...++. ++++++||+.|++.|+ -+..+|+.|.||.|.|-+-
T Consensus 248 ~~~v~~~~~~~~~~-~~~~~~lL~~~~~~gi-~~~~~C~~G~Cg~C~~~~~ 296 (332)
T PRK10684 248 GLTFTKLQPAREFY-APVGTTLLEALESNKV-PVVAACRAGVCGCCKTKVV 296 (332)
T ss_pred ceEEEEecCCEEEE-eCCCChHHHHHHHcCC-CccCCCCCcCCCCCEEEEe
Confidence 34444544444454 6789999999999996 6889999999999999874
No 91
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=93.65 E-value=0.098 Score=50.23 Aligned_cols=47 Identities=30% Similarity=0.473 Sum_probs=36.8
Q ss_pred EECCEEEEecCCCCCCcHHHHHhhCCCCCcccCccCCCCCceEEEEec
Q 001052 24 YVNGLRKVLPDGLAHLTLLEYLRDIGLTGTKLGCGEGGCGACTVMVSR 71 (1172)
Q Consensus 24 ~~Ng~~~~~~~~~p~~~L~~~LR~~~l~g~k~gC~~G~CGaCtV~~~~ 71 (1172)
..+|+......++.+.+||+.+.++|+. .-.+|+.|.||+|.|.|..
T Consensus 8 ~~~~~~~~~~~~~~g~tiLe~a~~~gi~-i~~~C~~g~C~TC~v~v~~ 54 (102)
T COG0633 8 TIDGEGDVTEAVNEGETLLEAAERNGIP-IEYACRGGACGTCRVKVLE 54 (102)
T ss_pred eccCCcceEEeccCCcHHHHHHHHCCCc-ceecCCCCccCccEEEEec
Confidence 4455434444466699999999998888 7789999999999998854
No 92
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=93.52 E-value=0.43 Score=59.38 Aligned_cols=81 Identities=12% Similarity=0.098 Sum_probs=53.3
Q ss_pred ceEEecCCHHHHHHHHhhC---C-CcEEEeccCcceeeeeeccccC-ceEEecCCcccccceeecCCcEEEcccccHHHH
Q 001052 271 LKWYRPLKLQHLLELKSKY---P-DSKLLVGNTEVGIEMRLKRMQY-QVLISVTHVPELNVLNVKDDGLEIGAAVRLTEL 345 (1172)
Q Consensus 271 ~~~~~P~sl~eal~ll~~~---~-~a~lvaGgTdl~v~~k~~~~~~-~~lIdl~~v~EL~~I~~~~~~l~IGA~vTl~~l 345 (1172)
...++|+|.+|+.++++.. . ..++++|++.....+-...... ..+||++++..+-.|..+...++++|++++.+|
T Consensus 33 ~~vv~P~s~eeV~~iV~~A~~~g~~v~v~GG~gHs~~~~a~t~~~~ggvvIdL~~Ln~il~iD~~~~tVtV~AG~~l~~L 112 (557)
T TIGR01677 33 ANVAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLACPDGSDGALLISTKRLNHVVAVDATAMTVTVESGMSLREL 112 (557)
T ss_pred CEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCcCcccccCCCCCEEEEEcccCCCCEEEeCCCCEEEECCCCcHHHH
Confidence 4689999999999887653 2 3456655332211110111011 389999987665555666678999999999999
Q ss_pred HHHHHH
Q 001052 346 LKMFRK 351 (1172)
Q Consensus 346 ~~~l~~ 351 (1172)
.+.|.+
T Consensus 113 ~~~L~~ 118 (557)
T TIGR01677 113 IVEAEK 118 (557)
T ss_pred HHHHHH
Confidence 988653
No 93
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=93.44 E-value=0.078 Score=61.99 Aligned_cols=47 Identities=23% Similarity=0.446 Sum_probs=39.0
Q ss_pred EEEEEECCEEEEecCCCCCCcHHHHHhhCCCCCcccCccCCCCCceEEEEe
Q 001052 20 EAILYVNGLRKVLPDGLAHLTLLEYLRDIGLTGTKLGCGEGGCGACTVMVS 70 (1172)
Q Consensus 20 ~i~~~~Ng~~~~~~~~~p~~~L~~~LR~~~l~g~k~gC~~G~CGaCtV~~~ 70 (1172)
.|+|.-+|+.++ +.++++||+.|++.|+. ...+|+.|.||.|.|-+-
T Consensus 4 ~v~~~~~~~~~~---~~~g~tlL~a~~~~gi~-~~~~C~~G~Cg~C~~~~~ 50 (339)
T PRK07609 4 QVTLQPSGRQFT---AEPDETILDAALRQGIH-LPYGCKNGACGSCKGRLL 50 (339)
T ss_pred EEEEecCCeEEE---eCCCCcHHHHHHHcCCC-CCCCCCCeECCCCEEEEE
Confidence 577777776654 56899999999998875 789999999999999763
No 94
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=93.23 E-value=0.17 Score=60.98 Aligned_cols=77 Identities=13% Similarity=0.063 Sum_probs=57.6
Q ss_pred ceEEecCCHHHHHHHHhhCC-CcEEEeccCcceeeeeeccccCceEEecCCcccccceeecCCcEEEcccccHHHHHHHH
Q 001052 271 LKWYRPLKLQHLLELKSKYP-DSKLLVGNTEVGIEMRLKRMQYQVLISVTHVPELNVLNVKDDGLEIGAAVRLTELLKMF 349 (1172)
Q Consensus 271 ~~~~~P~sl~eal~ll~~~~-~a~lvaGgTdl~v~~k~~~~~~~~lIdl~~v~EL~~I~~~~~~l~IGA~vTl~~l~~~l 349 (1172)
...++|+|.+|+.++++... ..++++||++..-.. .....+||++++..+-.+..+.+.++++|++++.+|.+.|
T Consensus 13 ~~v~~P~s~~ev~~~v~~a~~~v~~~G~Ghs~~~~~----~~~g~~idl~~l~~i~~~d~~~~~v~v~aG~~l~~l~~~L 88 (419)
T TIGR01679 13 SAIVRPTDEGELADVIAQAAKPVRAVGSGHSFTDLA----CTDGTMISLTGLQGVVDVDQPTGLATVEAGTRLGALGPQL 88 (419)
T ss_pred CeEECCCCHHHHHHHHHHhCCCEEEEeCCCCCCCcc----cCCCEEEEhhHcCCceeecCCCCEEEEcCCCCHHHHHHHH
Confidence 46899999999999887652 478888887654321 1235899998866554455557899999999999999876
Q ss_pred HH
Q 001052 350 RK 351 (1172)
Q Consensus 350 ~~ 351 (1172)
.+
T Consensus 89 ~~ 90 (419)
T TIGR01679 89 AQ 90 (419)
T ss_pred HH
Confidence 43
No 95
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.
Probab=93.15 E-value=0.12 Score=50.35 Aligned_cols=42 Identities=21% Similarity=0.387 Sum_probs=34.1
Q ss_pred ECCEEEEecCCCCCCcHHHHHhhCCCCCcccCcc-CCCCCceEEEEe
Q 001052 25 VNGLRKVLPDGLAHLTLLEYLRDIGLTGTKLGCG-EGGCGACTVMVS 70 (1172)
Q Consensus 25 ~Ng~~~~~~~~~p~~~L~~~LR~~~l~g~k~gC~-~G~CGaCtV~~~ 70 (1172)
-+|+.++ +.++++||+.|++.|+. +-..|+ .|.||.|-|.|.
T Consensus 13 p~~~~~~---~~~g~tLL~a~~~~gi~-i~~~CgG~G~CgtC~v~V~ 55 (110)
T TIGR02007 13 PEGAVVE---AKPGETILDVALDNGIE-IEHACEKSCACTTCHCIVR 55 (110)
T ss_pred CCCeEEE---ECCCChHHHHHHHcCCC-ccccCCCCceeCCCEEEEe
Confidence 3465554 56899999999998876 778998 699999999884
No 96
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=92.90 E-value=0.11 Score=62.32 Aligned_cols=53 Identities=30% Similarity=0.451 Sum_probs=43.1
Q ss_pred CcceEEEEEECCE-EEEecCCCCCCcHHHHHhhCCCCCcccCccC-CCCCceEEEEe
Q 001052 16 GWTKEAILYVNGL-RKVLPDGLAHLTLLEYLRDIGLTGTKLGCGE-GGCGACTVMVS 70 (1172)
Q Consensus 16 ~~~~~i~~~~Ng~-~~~~~~~~p~~~L~~~LR~~~l~g~k~gC~~-G~CGaCtV~~~ 70 (1172)
+++..+++++||. ..+++ +.++++||+.|+..|+. ....|+. |.||.|.|-+.
T Consensus 31 ~~~~~~~i~~~~~~~~~~~-~~~g~tLL~a~~~~gi~-i~~~C~g~G~CgtC~v~v~ 85 (409)
T PRK05464 31 VPSGDVTIKINGDPEKTIT-VPAGGKLLGALASNGIF-LSSACGGGGSCGQCRVKVK 85 (409)
T ss_pred ccCccEEEEEcCCCcEEEE-ECCCchHHHHHHHcCCC-cccCCCCccEeCCCEEEEe
Confidence 5677888999983 34554 77999999999998875 6678995 99999999874
No 97
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=92.41 E-value=0.31 Score=60.60 Aligned_cols=101 Identities=15% Similarity=0.077 Sum_probs=69.5
Q ss_pred ceEEecCCHHHHHHHHhh---CC-CcEEEeccCcceeeeeeccccCceEEecCCcccccceeecCCcEEEcccccHHHHH
Q 001052 271 LKWYRPLKLQHLLELKSK---YP-DSKLLVGNTEVGIEMRLKRMQYQVLISVTHVPELNVLNVKDDGLEIGAAVRLTELL 346 (1172)
Q Consensus 271 ~~~~~P~sl~eal~ll~~---~~-~a~lvaGgTdl~v~~k~~~~~~~~lIdl~~v~EL~~I~~~~~~l~IGA~vTl~~l~ 346 (1172)
...++|+|.+|+.++++. +. ...+.+|||++.-..- ......+||++++..+..|..++..++++|++++.+|.
T Consensus 135 ~~Vv~P~s~eeV~~ivk~a~~~~ipv~prGgGts~~G~~~--~~~ggivIdl~~mn~I~~id~~~~~vtVeaGv~~~~L~ 212 (555)
T PLN02805 135 DVVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSIEGHTL--APHGGVCIDMSLMKSVKALHVEDMDVVVEPGIGWLELN 212 (555)
T ss_pred CEEEEcCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCcc--CCCCEEEEEccCCCCeEEEeCCCCEEEEeCCcCHHHHH
Confidence 357889999998877653 32 3577899998842100 01225799999877766677778899999999999999
Q ss_pred HHHHHhhhcCCCCccchHHHHHHHHHHhcccccccccccccccccc
Q 001052 347 KMFRKVVTERPAHETSSCKAFIEQIKWFAGTQIKNVASVGGNICTA 392 (1172)
Q Consensus 347 ~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~a 392 (1172)
+.+++.=-.+ +. .+. ..+||||+|++.
T Consensus 213 ~~L~~~Gl~~--------p~---------~p~--~~~TIGG~ia~n 239 (555)
T PLN02805 213 EYLEPYGLFF--------PL---------DPG--PGATIGGMCATR 239 (555)
T ss_pred HHHHHcCCEe--------CC---------CCc--cccChhhHhhCC
Confidence 9875432111 11 111 347999999866
No 98
>PRK05713 hypothetical protein; Provisional
Probab=92.29 E-value=0.18 Score=58.28 Aligned_cols=45 Identities=31% Similarity=0.443 Sum_probs=37.2
Q ss_pred EEEECCEEEEecCCCCCCcHHHHHhhCCCCCcccCccCCCCCceEEEEe
Q 001052 22 ILYVNGLRKVLPDGLAHLTLLEYLRDIGLTGTKLGCGEGGCGACTVMVS 70 (1172)
Q Consensus 22 ~~~~Ng~~~~~~~~~p~~~L~~~LR~~~l~g~k~gC~~G~CGaCtV~~~ 70 (1172)
+|+.||+.+++ .+++|||+.+++.|+. ...+|+.|.||.|.|.+-
T Consensus 3 ~~~~~~~~~~~---~~g~tlL~a~~~~gi~-~~~~C~~G~Cg~C~~~~~ 47 (312)
T PRK05713 3 ELRVGERRWSV---PAGSNLLDALNAAGVA-VPYSCRAGSCHACLVRCL 47 (312)
T ss_pred cEecCCeEEEE---CCCCcHHHHHHHcCCC-CCcCCCCcCCCCCeEEEE
Confidence 47789987654 5899999999988763 457899999999999873
No 99
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=91.82 E-value=0.18 Score=60.52 Aligned_cols=50 Identities=30% Similarity=0.462 Sum_probs=40.3
Q ss_pred eEEEEEECC-EEEEecCCCCCCcHHHHHhhCCCCCcccCccC-CCCCceEEEEe
Q 001052 19 KEAILYVNG-LRKVLPDGLAHLTLLEYLRDIGLTGTKLGCGE-GGCGACTVMVS 70 (1172)
Q Consensus 19 ~~i~~~~Ng-~~~~~~~~~p~~~L~~~LR~~~l~g~k~gC~~-G~CGaCtV~~~ 70 (1172)
..+++++|| ...+++ +.+++|||+.+++.|+. ....|+. |.||.|.|.+.
T Consensus 30 ~~v~v~~~~~~~~~~~-~~~g~tlL~a~~~~gi~-i~~~C~g~G~Cg~C~v~v~ 81 (405)
T TIGR01941 30 GDITIGINDDEEKSIT-VPAGGKLLNTLASNGIF-ISSACGGGGTCGQCRVRVV 81 (405)
T ss_pred ccEEEEEcCCCceEEE-ECCCChHHHHHHHcCCC-CcccCCCccEeCCCEEEEc
Confidence 348889985 445554 67899999999998875 6778996 79999999885
No 100
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=91.52 E-value=0.26 Score=62.13 Aligned_cols=98 Identities=23% Similarity=0.376 Sum_probs=69.8
Q ss_pred EEEEECCEEEEecCCCCCCcHHHHHhhCCCCCcc----cCcc-CCCCCceEEEEeccccCCCcccceeecccccchhccC
Q 001052 21 AILYVNGLRKVLPDGLAHLTLLEYLRDIGLTGTK----LGCG-EGGCGACTVMVSRYDKKSKKCVHCAVNACLAPLYSLE 95 (1172)
Q Consensus 21 i~~~~Ng~~~~~~~~~p~~~L~~~LR~~~l~g~k----~gC~-~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~ 95 (1172)
++++|||+.+++ +.+.|||+..|+.|+.=.. .+|+ -|.|.-|.|-+++-. +++.||.+|+. +
T Consensus 2 ~tI~IDG~ei~v---~~g~tvLqAa~~aGi~IP~fCyh~~ls~~GaCRmClVEveg~~--------k~~~SC~tpv~--d 68 (693)
T COG1034 2 VTITIDGKEIEV---PEGETVLQAAREAGIDIPTFCYHPRLSIAGACRMCLVEVEGAP--------KLVASCATPVT--D 68 (693)
T ss_pred eEEEECCEEEec---CCCcHHHHHHHHcCCCCCcccccCCCCcccceeEEEEEecCCC--------ccccccccccC--C
Confidence 568999998875 4788999999987654432 2455 589999999998622 68999999754 8
Q ss_pred CceEEEeecccCCCCCcCHHHHHHHHhCCCCCCCCchH
Q 001052 96 GMHVITVEGVGNRKHGLHPIQESLVRSHGSQCGFCTPG 133 (1172)
Q Consensus 96 g~~i~T~Egl~~~~~~~~~iq~a~~~~~~~qCG~CtpG 133 (1172)
|+.|-|==-. ....-+-|-+.+.-+|-.=|+-|--|
T Consensus 69 GM~I~T~s~~--vk~~R~~vmE~LLiNHPlDCpiCD~g 104 (693)
T COG1034 69 GMVISTNSEE--VKKAREGVMEFLLINHPLDCPVCDKG 104 (693)
T ss_pred CeEEecCCHH--HHHHHHHHHHHHHhcCCCCCCccCCC
Confidence 8887651000 01123456777778888888888754
No 101
>PRK09970 xanthine dehydrogenase subunit XdhA; Provisional
Probab=91.48 E-value=3 Score=54.20 Aligned_cols=192 Identities=16% Similarity=0.168 Sum_probs=112.3
Q ss_pred CCCCCeEEEEEecCCCeEEEEeCCCCh-----HHHHHHHHHHhCCCCccEEEEe-------CccCCCCCCCCCcchHHHH
Q 001052 781 YLEPHSSVVWTMDHGNEVHMISSTQAP-----QKHQKYVSHVLGLPMSKVVCKT-------KRIGGGFGGKETRSAFIAA 848 (1172)
Q Consensus 781 ~mEp~~a~A~~~~~~g~l~V~~stQ~p-----~~~r~~vA~~Lglp~~kV~V~~-------~~vGGgFG~K~~~~~~~~~ 848 (1172)
.++...+....+ .||.++|++++.-. +.+...+|+.||+|.++|+|+. ++-+|.||++.+.....++
T Consensus 457 ~~~~~~a~v~i~-~dGsv~v~~g~~e~GQG~~T~~aQiaAe~LGi~~~~V~v~~~~dT~~~p~~~gt~aSr~t~~~g~Av 535 (759)
T PRK09970 457 GLEIAGARLLMN-QDGTVQVQSGATEIGQGSDTVFSQMVAETVGIPVSDVRVISTQDTDVTPFDPGAYASRQSYVAGPAI 535 (759)
T ss_pred CCCcceEEEEEc-cCceEEEEECCCCcCCCHHHHHHHHHHHHhCCCHHhEEEEccCCCCCCCCCCCCchhhhHHHHHHHH
Confidence 366778888887 58899999999544 5568889999999999999994 4667888888764332222
Q ss_pred HHH----------HHHHhCCCCE---EE-----EeChh-------hhhhhc--------------C-------CCCceEE
Q 001052 849 AAA----------VPSFLLNRPV---NL-----TLDRD-------IDMMIS--------------G-------QRHSFLG 882 (1172)
Q Consensus 849 ~aA----------laA~k~gRPV---kl-----~~tR~-------E~~~~~--------------~-------~R~~~~~ 882 (1172)
..| ++|..++-++ .+ ..... .++... + ...-..+
T Consensus 536 ~~Aa~~lr~~l~~~aa~~l~~~~~~l~~~~G~v~~~~~~~~~~~~~~la~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 615 (759)
T PRK09970 536 RKAALELKEKILAHAAVMLHQSAMNLDIIDGHIVVKRPGEPLMSLEELAMDAYYHPERGGQITAESSIKTTTNPPAFGCT 615 (759)
T ss_pred HHHHHHHHHHHHHHHHHHhCCChHHEEEECCEEEECCCCCccccHHHHHHHhhccccCCCceeEEEEecCCCCCCceEEE
Confidence 111 1233333222 11 00000 000000 0 0011233
Q ss_pred EEEEeeC-CCCcEEEEEEeEEecCCCCCCchH--------HHHHH--Hhh---ccC-----------CCCCCCeE----E
Q 001052 883 KYKVGFT-NEGKVLALDLEIYNNAGNSLDLSL--------AVLER--AMF---HSD-----------NVYEIPNV----R 933 (1172)
Q Consensus 883 ~~k~g~d-~dG~i~a~~~~~~~d~Ga~~~~s~--------~v~~~--~~~---~~~-----------~~Y~ipn~----~ 933 (1172)
-.++-+| ..|++.=+++....|.|-..+... .+... ++. ..+ .-|.+|.. +
T Consensus 616 ~aeVeVD~~TG~v~v~~~~~~~D~G~~iNP~~v~gQi~Gg~~qGiG~aL~E~~~~d~~~G~~~~~~~~dY~ip~~~d~P~ 695 (759)
T PRK09970 616 FVDVEVDIALCKVTINRILNVHDSGHILNPLLAEGQVHGGMGMGIGWALFEEMIIDEKTGVVRNPNLLDYKLPTMMDLPQ 695 (759)
T ss_pred EEEEEEeCCCCeEEEEEEEEEEEcCcccCHHHHHHHHHhHHHHHHHHHhcceeEEcCCCCeECCCChhhccCCCcccCCC
Confidence 3467787 679999999999999998655211 00000 000 000 12444332 3
Q ss_pred EEEEEEecCCCCCCc--cCCCChhhhHHHHHHHHHHHHHHcCC
Q 001052 934 IMGNVCFTNFPSNTA--FRGFGGPQGMLITENWIQRVAVEVRK 974 (1172)
Q Consensus 934 ~~~~~v~TN~~~~ga--~RG~G~~q~~fa~Es~mDelA~~lg~ 974 (1172)
++...+.++.++ +. -+|.|.+...-+.=.+.+-+++.+|.
T Consensus 696 i~v~~ve~~~~~-~p~GaKgvGE~~~~~~~~AIanAi~~A~G~ 737 (759)
T PRK09970 696 LESAFVEIYEPQ-SAYGHKSLGEPPIISPAPAIRNAVLMATGV 737 (759)
T ss_pred eEEEEEecCCCC-CCCCCcccCCCcccchHHHHHHHHHHhhCC
Confidence 556666676543 44 57788887776777777788888875
No 102
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=91.32 E-value=0.37 Score=59.69 Aligned_cols=98 Identities=20% Similarity=0.294 Sum_probs=73.1
Q ss_pred eEEEEEECCEEEEecCCCCCCcHHHHHhhCCCCC-----cccCccCCCCCceEEEEeccccCCCcccceeecccccchhc
Q 001052 19 KEAILYVNGLRKVLPDGLAHLTLLEYLRDIGLTG-----TKLGCGEGGCGACTVMVSRYDKKSKKCVHCAVNACLAPLYS 93 (1172)
Q Consensus 19 ~~i~~~~Ng~~~~~~~~~p~~~L~~~LR~~~l~g-----~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~ 93 (1172)
..++++|||+.+++ .+++|+|++|.+.|+-= .+.-=.-|.|-.|.|.+|| +.+.||.+++.
T Consensus 4 ~~i~vtidg~~~~v---~~G~tiL~a~~~~gI~iP~iCy~~~l~pi~sCd~ClVEidG----------~l~rsCsT~v~- 69 (978)
T COG3383 4 KMITVTIDGRSIEV---EEGTTILRAANRNGIEIPHICYHESLGPIGSCDTCLVEIDG----------KLVRSCSTPVE- 69 (978)
T ss_pred eeEEEEECCeEEec---CCChHHHHHHHhcCCcccceeccCCCCcccccceEEEEecC----------ceecccccccc-
Confidence 46899999998865 58999999998755443 3333456899999999996 67999999975
Q ss_pred cCCceEEEeecccCCCCCcCHHHHHHHHhCCCCCCCCchH
Q 001052 94 LEGMHVITVEGVGNRKHGLHPIQESLVRSHGSQCGFCTPG 133 (1172)
Q Consensus 94 ~~g~~i~T~Egl~~~~~~~~~iq~a~~~~~~~qCG~CtpG 133 (1172)
+|..|.|-.-.- ++.-..+-+.+...|-.-|--|.-+
T Consensus 70 -dGm~v~t~s~rv--k~~r~~~md~~l~nH~LyC~vCd~n 106 (978)
T COG3383 70 -DGMVVRTNSERV--KEARREAMDRILSNHPLYCTVCDNN 106 (978)
T ss_pred -CCcEEecccHHH--HHHHHHHHHHHHhcCCcCccccCCC
Confidence 899999853321 1112334567888999999888776
No 103
>TIGR03194 4hydrxCoA_A 4-hydroxybenzoyl-CoA reductase, alpha subunit. This model represents the largest chain, alpha, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=91.14 E-value=4.2 Score=52.82 Aligned_cols=59 Identities=10% Similarity=0.177 Sum_probs=46.4
Q ss_pred CCCeEEEEEecCCCeEEEEeCCCCh-----HHHHHHHHHHhCCCCccEEEEeCc------cCCCCCCCCCc
Q 001052 783 EPHSSVVWTMDHGNEVHMISSTQAP-----QKHQKYVSHVLGLPMSKVVCKTKR------IGGGFGGKETR 842 (1172)
Q Consensus 783 Ep~~a~A~~~~~~g~l~V~~stQ~p-----~~~r~~vA~~Lglp~~kV~V~~~~------vGGgFG~K~~~ 842 (1172)
.+..+....+ .||.++|+++++.. +.++..+|+.||+|.++|+|...+ -+|.+|++.+.
T Consensus 443 ~~~~a~v~l~-~dG~v~v~~g~~e~GqG~~T~~~qiaAe~LGip~d~V~v~~~DT~~~p~~~gt~~Sr~t~ 512 (746)
T TIGR03194 443 PHATVALKLD-FDGGITLLTGAADIGQGSSTIASQVAAEVLGVRLSRIRVISADSALTPKDNGSYSSRVTF 512 (746)
T ss_pred CCceEEEEEc-CCccEEEEEcCCCCCCCHHHHHHHHHHHHhCCCHHhEEEEccCCCCCCCCCCChhHhHHH
Confidence 3567777776 57899999988655 567889999999999999999755 46778877653
No 104
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=90.88 E-value=4.8 Score=53.49 Aligned_cols=191 Identities=13% Similarity=0.070 Sum_probs=112.5
Q ss_pred CCCCeEEEEEecCCCeEEEEeCCCCh-----HHHHHHHHHHhCCCCccEEEEeC------ccCCCCCCCCCcchHHHHHH
Q 001052 782 LEPHSSVVWTMDHGNEVHMISSTQAP-----QKHQKYVSHVLGLPMSKVVCKTK------RIGGGFGGKETRSAFIAAAA 850 (1172)
Q Consensus 782 mEp~~a~A~~~~~~g~l~V~~stQ~p-----~~~r~~vA~~Lglp~~kV~V~~~------~vGGgFG~K~~~~~~~~~~a 850 (1172)
+++..+....+ .||.++|+++++.. +.+.+.+|+.||+|.++|+|... .-+|.||++.+...-.++..
T Consensus 662 ~~~~~a~v~l~-~dGsv~v~~g~~e~GqG~~T~~~QiaAe~LGip~d~V~v~~~DT~~~p~~~gt~aSr~t~~~G~Av~~ 740 (956)
T PRK09800 662 IDQANCMIKLE-SDGTFIVHSGGADIGTGLDTVVTKLAAEVLHCPPQDVHVISGDTDHALFDKGAYASSGTCFSGNAARL 740 (956)
T ss_pred CCCceEEEEEC-CCceEEEEECCCCCCccHHHHHHHHHHHHHCCCceeEEEEeCCCCCCCCCCCcchhhhHHHHHHHHHH
Confidence 45566777776 47899999999855 56788999999999999999964 45788888876433222211
Q ss_pred H----------HHHHhCCCCE---EEE------eC-----hhh------------hhhhcC-CCC-----ce-EEEEEEe
Q 001052 851 A----------VPSFLLNRPV---NLT------LD-----RDI------------DMMISG-QRH-----SF-LGKYKVG 887 (1172)
Q Consensus 851 A----------laA~k~gRPV---kl~------~t-----R~E------------~~~~~~-~R~-----~~-~~~~k~g 887 (1172)
| ++|..++.|. .+. -+ -.+ .+...+ +.+ ++ .+-.++-
T Consensus 741 Aa~~l~~kl~~~aa~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~aeVe 820 (956)
T PRK09800 741 AAENLREKILFHGAQMLGEPVADVQLATPGVVRGKKGEVSFGDIAHKGETGTGFGSLVGTGSYITPDFAFPYGANFAEVA 820 (956)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHEEEecCCEEeCCCCcccHHHHHHHHhcCCCCCCeEEEEEecCCCCCcceEEEEEEEE
Confidence 1 2344444332 111 00 000 010001 011 11 3345777
Q ss_pred eCC-CCcEEEEEEeEEecCCCCCCchHH--HHHH----Hhh-----------------ccCCCCCCCeE-----EEEEEE
Q 001052 888 FTN-EGKVLALDLEIYNNAGNSLDLSLA--VLER----AMF-----------------HSDNVYEIPNV-----RIMGNV 938 (1172)
Q Consensus 888 ~d~-dG~i~a~~~~~~~d~Ga~~~~s~~--v~~~----~~~-----------------~~~~~Y~ipn~-----~~~~~~ 938 (1172)
+|. .|++.=+++....|.|-..+.... -+.. .+. ....-|.+|.. .++...
T Consensus 821 VD~~TG~vkvl~~~~~~D~G~vINP~~v~gQieGgi~qGiG~AL~Ee~~~d~~G~~~~~~l~~Y~iPt~~DiP~~i~v~~ 900 (956)
T PRK09800 821 VNTRTGEIRLDKFYALLDCGTPVNPELALGQIYGATLRAIGHSMSEEIIYDAEGHPLTRDLRSYGAPKIGDIPRDFRAVL 900 (956)
T ss_pred EECCCCcEEEEEEEEEEECCccCCHHHHHHHHHHHHHHHHHHHHhCCcEECCCCcCCCCCcccCCCCChhhCCCceEEEE
Confidence 774 599999999999999986542110 0110 000 00123555433 245556
Q ss_pred EecCCCCCCcc--CCCChhhhHHHHHHHHHHHHHHcCC
Q 001052 939 CFTNFPSNTAF--RGFGGPQGMLITENWIQRVAVEVRK 974 (1172)
Q Consensus 939 v~TN~~~~ga~--RG~G~~q~~fa~Es~mDelA~~lg~ 974 (1172)
+.++.++ ++| +|.|.+...-+.=.+.+-+++.+|.
T Consensus 901 ve~~~~~-~p~GaKgvGE~~~~~~a~AIanAI~~A~G~ 937 (956)
T PRK09800 901 VPSDDKV-GPFGAKSISEIGVNGAAPAIATAIHDACGI 937 (956)
T ss_pred EcCCCCC-CCCCCcccCCCcccchHHHHHHHHHHHhCc
Confidence 6666553 554 4788887777777778888888874
No 105
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=90.49 E-value=0.65 Score=54.50 Aligned_cols=95 Identities=12% Similarity=0.066 Sum_probs=60.4
Q ss_pred HHHHHHHHhhCC-CcEEEeccCcceeeeeeccccCceEEecCCcccccceeecCCcEEEcccccHHHHHHHHHHhhhcCC
Q 001052 279 LQHLLELKSKYP-DSKLLVGNTEVGIEMRLKRMQYQVLISVTHVPELNVLNVKDDGLEIGAAVRLTELLKMFRKVVTERP 357 (1172)
Q Consensus 279 l~eal~ll~~~~-~a~lvaGgTdl~v~~k~~~~~~~~lIdl~~v~EL~~I~~~~~~l~IGA~vTl~~l~~~l~~~~~~~~ 357 (1172)
|.++++...++. ..++.+|||....-. .....+||++++...-.+..++..++++|++++.||.+.|.+.=..++
T Consensus 7 v~~~v~~A~~~~~~v~~~GgGt~~~~g~----~~~~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~~G~~lp 82 (352)
T PRK11282 7 LLERVRQAAADGTPLRIRGGGSKDFYGR----ALAGEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAEAGQMLP 82 (352)
T ss_pred HHHHHHHHHHCCCeEEEECCCCCCCCCC----CCCCeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHHcCCeeC
Confidence 444455444553 478889998543211 112458999987666666667788999999999999998754321111
Q ss_pred CCccchHHHHHHHHHHhccccccccccccccccccC
Q 001052 358 AHETSSCKAFIEQIKWFAGTQIKNVASVGGNICTAS 393 (1172)
Q Consensus 358 ~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~~as 393 (1172)
+--+.....+||||+|++..
T Consensus 83 ----------------~~p~~~~~~~TIGG~iatg~ 102 (352)
T PRK11282 83 ----------------FEPPHFGGGATLGGMVAAGL 102 (352)
T ss_pred ----------------CCCCCcCCCcEehhHHhcCC
Confidence 00112333589999999753
No 106
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=90.04 E-value=4.8 Score=53.50 Aligned_cols=191 Identities=13% Similarity=0.091 Sum_probs=111.5
Q ss_pred CCCCeEEEEEecCCCeEEEEeCCCCh-----HHHHHHHHHHhCCCCccEEEEeCc------cCCCCCCCCCcchHHHHHH
Q 001052 782 LEPHSSVVWTMDHGNEVHMISSTQAP-----QKHQKYVSHVLGLPMSKVVCKTKR------IGGGFGGKETRSAFIAAAA 850 (1172)
Q Consensus 782 mEp~~a~A~~~~~~g~l~V~~stQ~p-----~~~r~~vA~~Lglp~~kV~V~~~~------vGGgFG~K~~~~~~~~~~a 850 (1172)
+++..+....+ .||.++|+++++.. +.+...+|+.||+|.++|+|+..+ -+|.||++.+...-.++..
T Consensus 658 ~~~~~a~v~l~-~dG~v~v~~g~~e~GqG~~T~~~QiaAe~LGvp~d~V~v~~~DT~~~p~~~gt~aSr~t~~~G~Av~~ 736 (951)
T TIGR03313 658 IDQANCMIKLE-SDGTFIVHSGGADIGTGLDTVVSKLTAEVLHCPMDDVHVISGDTDHALFDKGAYASSGTCFSGNAAKR 736 (951)
T ss_pred CCCccEEEEEc-CCceEEEEECCCCCCccHHHHHHHHHHHHHCCCHHhEEEEeCCCCCCCCCCCCcHHHHHHHHHHHHHH
Confidence 45567777776 57899999999855 667889999999999999999754 4788888866433222211
Q ss_pred H----------HHHHhCCCCE---EEE-----eCh------hhh------------hhhcC-CCC-----ce-EEEEEEe
Q 001052 851 A----------VPSFLLNRPV---NLT-----LDR------DID------------MMISG-QRH-----SF-LGKYKVG 887 (1172)
Q Consensus 851 A----------laA~k~gRPV---kl~-----~tR------~E~------------~~~~~-~R~-----~~-~~~~k~g 887 (1172)
| ++|..++-|. .+. ... .+- ....+ +++ ++ .+-.++-
T Consensus 737 Aa~~l~~kl~~~aa~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aeVe 816 (951)
T TIGR03313 737 AAENLREKILFHGAEMLGEPVADVDLAAPGLVRGKTGEVSYFDIAHKAETGTGFGQLVGTGSYITSEFAFPYGANFAEVA 816 (951)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHEEEecCCEEeCCCCcccHHHHHHHHhccCCCCCeEEEEEecCCCCCccceeEEEEEE
Confidence 1 2333444332 111 000 000 11111 011 12 2335777
Q ss_pred eCC-CCcEEEEEEeEEecCCCCCCchH--------HHHH--HHhh-------------ccCCCCCCCeE-----EEEEEE
Q 001052 888 FTN-EGKVLALDLEIYNNAGNSLDLSL--------AVLE--RAMF-------------HSDNVYEIPNV-----RIMGNV 938 (1172)
Q Consensus 888 ~d~-dG~i~a~~~~~~~d~Ga~~~~s~--------~v~~--~~~~-------------~~~~~Y~ipn~-----~~~~~~ 938 (1172)
+|. .|++.=+++....|.|-..+... .++. .++. ....-|.+|.. .++...
T Consensus 817 VD~~TG~vkv~r~~~~~D~G~~INP~~v~gQieGg~~qGiG~AL~Ee~~~d~~G~~~~~~l~~Y~iPt~~D~P~~~~v~~ 896 (951)
T TIGR03313 817 VNTRTGEIRLDKFYALLDCGTPVNPELALGQIYGATMRAIGHSMTEEIVYDDNGIPLTRDLKSYGAPKIGDIPRDFRAVL 896 (951)
T ss_pred EECCCCcEEEEEEEEEEECCcccCHHHHHHHHHHHHHHHHHHHHhCCcEECCCCcCCCCChhhCCCCChHhCCCceEEEE
Confidence 885 59999999999999998654211 0000 0000 00123544432 255566
Q ss_pred EecCCCCCCcc--CCCChhhhHHHHHHHHHHHHHHcCC
Q 001052 939 CFTNFPSNTAF--RGFGGPQGMLITENWIQRVAVEVRK 974 (1172)
Q Consensus 939 v~TN~~~~ga~--RG~G~~q~~fa~Es~mDelA~~lg~ 974 (1172)
+.++.+ .++| +|.|.+...-+.=.+.+-+++.+|.
T Consensus 897 ve~~~~-~~p~GaKGiGE~~~~~~apAIanAI~dA~G~ 933 (951)
T TIGR03313 897 VPSDDK-VGPYGAKSISEIGVNGAAPAIATAIHDACGV 933 (951)
T ss_pred EcCCCC-CCCCCCcccCCCcccchHHHHHHHHHHHhCc
Confidence 666654 3454 5788887776666777777777774
No 107
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=88.97 E-value=5 Score=52.80 Aligned_cols=183 Identities=14% Similarity=0.095 Sum_probs=101.5
Q ss_pred CCeEEEEEecCCCeEEEEeCCCCh-----HHHHHHHHHHhCCCCccEEEEeC------ccCCCCCCCCCcchHHHHHHHH
Q 001052 784 PHSSVVWTMDHGNEVHMISSTQAP-----QKHQKYVSHVLGLPMSKVVCKTK------RIGGGFGGKETRSAFIAAAAAV 852 (1172)
Q Consensus 784 p~~a~A~~~~~~g~l~V~~stQ~p-----~~~r~~vA~~Lglp~~kV~V~~~------~vGGgFG~K~~~~~~~~~~aAl 852 (1172)
+..++.... ||.++|+++++.. +.+...+|+.||+|.++|+|... +-+|.+|++.+...-- ++-.
T Consensus 594 ~~~~~~~~~--DGsv~v~~g~~e~GQG~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~gt~aSR~t~~~G~--Av~~ 669 (848)
T TIGR03311 594 TGRCNLAVE--DGKVHIRTSAACIGQGLGTVLTQIVCETTGLPPEVIVCELPDTALTPDSGTTTASRQSLFTGE--ATRR 669 (848)
T ss_pred cceEEEEEc--CCEEEEEECCCCcCcCHHHHHHHHHHHHHCCCHHHEEEEcCCCCCCCCCCCCchhhHHHHHHH--HHHH
Confidence 345566554 7899999998665 45678899999999999999864 4577788886533222 2222
Q ss_pred HHHhCCCCE------EE----EeCh----hhhhhhcC-CCCc-e---EEEEEEeeCCCCcEEEEEEeEEecCCCCCCchH
Q 001052 853 PSFLLNRPV------NL----TLDR----DIDMMISG-QRHS-F---LGKYKVGFTNEGKVLALDLEIYNNAGNSLDLSL 913 (1172)
Q Consensus 853 aA~k~gRPV------kl----~~tR----~E~~~~~~-~R~~-~---~~~~k~g~d~dG~i~a~~~~~~~d~Ga~~~~s~ 913 (1172)
||+++++=+ .+ .... .+.+...+ +..+ + ..-.-+-+|..|+++ ++....|.|-..+...
T Consensus 670 Aa~~l~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eVd~tG~v~--r~~~v~D~G~vINP~~ 747 (848)
T TIGR03311 670 AAAKLKEALRGRTLAELEGEEFYGEYHSITDPLNSDKENPVSHVGYGYATQVVILDDAGKVE--KVVAAYDVGRAINPLN 747 (848)
T ss_pred HHHHHHHHHHhcCHHHcCCCEEeeccccccCcceeeccCCCCccccceEEEEEEECCCCeEE--EEEEEEeCCccCCHHH
Confidence 233322110 00 0000 00011111 0101 0 111223346889887 8888889997654211
Q ss_pred H--HHHH----Hh---------------------hccCCCCCCCeEEEEEEEEecCCCCCCc--cCCCChhhhHHHHHHH
Q 001052 914 A--VLER----AM---------------------FHSDNVYEIPNVRIMGNVCFTNFPSNTA--FRGFGGPQGMLITENW 964 (1172)
Q Consensus 914 ~--v~~~----~~---------------------~~~~~~Y~ipn~~~~~~~v~TN~~~~ga--~RG~G~~q~~fa~Es~ 964 (1172)
. -+.. .+ ...+..-++|.+++ ..+.++.+. ++ .+|.|.+...-+.=.+
T Consensus 748 veGQieGG~~qGlG~AL~Ee~~~d~G~~~~~~~dY~iPt~~D~P~i~v--~~ve~~~~~-~p~GaKGvGE~~~~~~~~AI 824 (848)
T TIGR03311 748 LEGQIEGGIVMGLGYALTEDFPLREGIPTAKFGTLGLFRSTQVPEIET--HLIEKNGTP-LAYGAKGVGELATIPTAPAV 824 (848)
T ss_pred HHHHHHHHHHHHHHHHhcCcEEecCCeecCChhhccCCChhhCCCeEE--EEEeCCCCC-CCCCCccCCCCcccchHHHH
Confidence 0 0000 00 01122335665554 455555332 33 4788888888888888
Q ss_pred HHHHHHHcCCC
Q 001052 965 IQRVAVEVRKS 975 (1172)
Q Consensus 965 mDelA~~lg~D 975 (1172)
.+-+++.+|.-
T Consensus 825 anAV~~A~G~r 835 (848)
T TIGR03311 825 AGAYYRFDGKF 835 (848)
T ss_pred HHHHHHhHCcC
Confidence 89999999964
No 108
>PLN02441 cytokinin dehydrogenase
Probab=88.45 E-value=3.5 Score=50.96 Aligned_cols=77 Identities=8% Similarity=0.024 Sum_probs=54.9
Q ss_pred CceEEecCCHHHHHHHHhhCC----C--cEEEeccCcceeeeeeccccCceEEecCCccc------ccceeecCCcEEEc
Q 001052 270 GLKWYRPLKLQHLLELKSKYP----D--SKLLVGNTEVGIEMRLKRMQYQVLISVTHVPE------LNVLNVKDDGLEIG 337 (1172)
Q Consensus 270 ~~~~~~P~sl~eal~ll~~~~----~--a~lvaGgTdl~v~~k~~~~~~~~lIdl~~v~E------L~~I~~~~~~l~IG 337 (1172)
....++|+|.+|+.++++... + .++.+||++..-. .......+||++++.. ...+..+...+++|
T Consensus 65 P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~---a~~~~GivIdms~Ln~i~~~~~ii~vd~~~~~VtV~ 141 (525)
T PLN02441 65 PAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQ---AQAPGGVVVDMRSLRGGVRGPPVIVVSGDGPYVDVS 141 (525)
T ss_pred CCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCC---ccCCCeEEEECCCCCCcCccCceEEEcCCCCEEEEc
Confidence 346799999999998877541 2 4566788877421 1112368999999776 33444556789999
Q ss_pred ccccHHHHHHHH
Q 001052 338 AAVRLTELLKMF 349 (1172)
Q Consensus 338 A~vTl~~l~~~l 349 (1172)
|++++.++.+.+
T Consensus 142 aG~~~~dv~~~l 153 (525)
T PLN02441 142 GGELWIDVLKAT 153 (525)
T ss_pred CCCCHHHHHHHH
Confidence 999999998764
No 109
>KOG2282 consensus NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit [Energy production and conversion]
Probab=87.79 E-value=0.87 Score=54.00 Aligned_cols=100 Identities=23% Similarity=0.457 Sum_probs=75.5
Q ss_pred ceEEEEEECCEEEEecCCCCCCcHHHHHhhCCCCCcccCcc------CCCCCceEEEEeccccCCCcccceeecccccch
Q 001052 18 TKEAILYVNGLRKVLPDGLAHLTLLEYLRDIGLTGTKLGCG------EGGCGACTVMVSRYDKKSKKCVHCAVNACLAPL 91 (1172)
Q Consensus 18 ~~~i~~~~Ng~~~~~~~~~p~~~L~~~LR~~~l~g~k~gC~------~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~ 91 (1172)
.+.|+++|+|+.+.+ +|++|+|.---..|+.=.+. |- .|.|--|.|.|.+-. ++|.||-||+
T Consensus 30 ~~~ievfvd~~~v~v---~pg~tvlqac~~~gv~iprf-cyh~rlsvagncrmclveveksp--------kpva~campv 97 (708)
T KOG2282|consen 30 PNKIEVFVDDQSVMV---EPGTTVLQACAKVGVDIPRF-CYHERLSVAGNCRMCLVEVEKSP--------KPVAACAMPV 97 (708)
T ss_pred ccceEEEECCeeEee---CCCcHHHHHHHHhCCCcchh-hhhhhhhhccceeEEEEEeccCC--------Ccchhhcccc
Confidence 478999999998864 69999998764445544333 32 489999999997632 6899999997
Q ss_pred hccCCceEEEeecccCCCCCcCHHHHHHHHhCCCCCCCCchH
Q 001052 92 YSLEGMHVITVEGVGNRKHGLHPIQESLVRSHGSQCGFCTPG 133 (1172)
Q Consensus 92 ~~~~g~~i~T~Egl~~~~~~~~~iq~a~~~~~~~qCG~CtpG 133 (1172)
+.|+.|.|=--+. +..-.-+.+-|.-+|-.-|..|.-|
T Consensus 98 --m~g~~iktns~~~--kkaregvmefll~nhpldcpicdqg 135 (708)
T KOG2282|consen 98 --MKGWKIKTNSDKS--KKAREGVMEFLLMNHPLDCPICDQG 135 (708)
T ss_pred --cCCceeecCchHH--HHHHHHHHHHHHhCCCCCCCccCCC
Confidence 4799999865553 1223457888899999999999876
No 110
>TIGR03196 pucD xanthine dehydrogenase D subunit. This gene has been characterized in B. subtilis as the molybdopterin binding-subunit of xanthine dehydrogenase (pucD), acting in conjunction with pucC, the FAD-binding subunit and pucE, the FeS-binding subunit. The more common XDH complex (GenProp0640) includes the xdhB gene which is related to pucD. It appears that most of the relatives of pucD outside of this narrow clade are involved in other processes as they are found in unrelated genomic contexts, contain the more common XDH complex and/or do not appear to process purines to allantoin.
Probab=86.23 E-value=30 Score=45.20 Aligned_cols=185 Identities=13% Similarity=0.086 Sum_probs=107.1
Q ss_pred eEEEEEecCCC--eEEEEeCCCCh-----HHHHHHHHHHhCCCCccEEEEeC------ccCCCCCCCCCcchHHHHHH--
Q 001052 786 SSVVWTMDHGN--EVHMISSTQAP-----QKHQKYVSHVLGLPMSKVVCKTK------RIGGGFGGKETRSAFIAAAA-- 850 (1172)
Q Consensus 786 ~a~A~~~~~~g--~l~V~~stQ~p-----~~~r~~vA~~Lglp~~kV~V~~~------~vGGgFG~K~~~~~~~~~~a-- 850 (1172)
.+.+..+ .|| .++|+++++.. +.+...+|+.||+|.++|+|... +-+|.+|++.+...--++..
T Consensus 467 ~a~v~l~-~dGsv~v~v~~g~~d~GQG~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~gt~~Sr~t~~~G~Av~~Aa 545 (768)
T TIGR03196 467 GARLELA-EDGTVKIRAHFACAECGQGFLAAAEQIAMEELGCAAEDISIAIADTAKGPKAGSSSASRGTSMSGGAIQGAC 545 (768)
T ss_pred cEEEEEe-CCCCeEEEEEECCCCcCCCHHHHHHHHHHHHhCCCHHHEEEecCCCCCCCCCCCCchhhhhHhHHHHHHHHH
Confidence 5667666 467 48899877544 45678899999999999999854 46788888876433222221
Q ss_pred --------HHHHHhCCCC---EEEEeC------------hh-----hhhh---------hcC---------------CCC
Q 001052 851 --------AVPSFLLNRP---VNLTLD------------RD-----IDMM---------ISG---------------QRH 878 (1172)
Q Consensus 851 --------AlaA~k~gRP---Vkl~~t------------R~-----E~~~---------~~~---------------~R~ 878 (1172)
.++|..++.+ +.+... +. -.+. ..+ +.+
T Consensus 546 ~~l~~kl~~~aa~~l~~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (768)
T TIGR03196 546 AAFAAQLKARAAETAGLPAEVVEAPAENLIPGAAEIVGDKNEAALRVPLAEAAADGPIAAETAFHDFPTSALDADVGQGD 625 (768)
T ss_pred HHHHHHHHHHHHHHhCCChhhEEEeCCeeeecccceeeecCCCcceEEHHHHhccccceeeeccccCCCcccccccccCC
Confidence 1234444433 222211 00 0010 001 000
Q ss_pred c------eEEEEEEeeCC-CCcEEEEEEeEEecCCCCCCchHH--HHHH--------Hhh------------------cc
Q 001052 879 S------FLGKYKVGFTN-EGKVLALDLEIYNNAGNSLDLSLA--VLER--------AMF------------------HS 923 (1172)
Q Consensus 879 ~------~~~~~k~g~d~-dG~i~a~~~~~~~d~Ga~~~~s~~--v~~~--------~~~------------------~~ 923 (1172)
+ ..+-.++-+|. .|++.=.++....|+|-..+.... -+.. ++. ..
T Consensus 626 ~~~~~~~ga~~~eveVd~~tG~v~v~~~~~~~D~G~~iNp~~~~gQi~Gg~~~Gig~al~E~~~~~~G~~~~~~~~~Y~~ 705 (768)
T TIGR03196 626 GHFAFAAAAAAAEVDVDLDLGDVKLIDCAHAIAAGPVLNPLALRGQIEGGAAMALGLALMEEAKMTDGRVAAENFDDYLI 705 (768)
T ss_pred CcccccceEEEEEEEEECCCCcEEEEEEEEEEECCCccCHHHHHHHHHHHHHHHHHHHHhCCeEecCCeECCCCcccccC
Confidence 1 12224666774 699999999999999976542110 0000 000 11
Q ss_pred CCCCCCCeEEEEEEEEecCCCCCCc--cCCCChhhhHHHHHHHHHHHHHHcCC
Q 001052 924 DNVYEIPNVRIMGNVCFTNFPSNTA--FRGFGGPQGMLITENWIQRVAVEVRK 974 (1172)
Q Consensus 924 ~~~Y~ipn~~~~~~~v~TN~~~~ga--~RG~G~~q~~fa~Es~mDelA~~lg~ 974 (1172)
....++|+++ ...+.++.+ .++ .+|.|.+...-+.=.+.+-+.+.+|.
T Consensus 706 p~~~d~P~~~--~~~~~~~~~-~~p~G~kG~GE~~~~~~~~AianAi~~A~G~ 755 (768)
T TIGR03196 706 PGIADVPDLD--FIAIEDLMK-DAPYGPKGVGEAGTCAATPAIIAAIHDAVGC 755 (768)
T ss_pred CChhhCCCeE--EEEEeCCCC-CCCCCCccCcCccccchHHHHHHHHHHHhCc
Confidence 2334556544 444455433 344 67888888877777888888888886
No 111
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=84.65 E-value=2.8 Score=46.96 Aligned_cols=144 Identities=14% Similarity=0.192 Sum_probs=86.7
Q ss_pred CccccCCCCceEEecCCHHHHHHHHhhCCCcEEEeccCcceeeeeeccccCceEEecCCcccccceeecCCcEEEccccc
Q 001052 262 PLNLSGFGGLKWYRPLKLQHLLELKSKYPDSKLLVGNTEVGIEMRLKRMQYQVLISVTHVPELNVLNVKDDGLEIGAAVR 341 (1172)
Q Consensus 262 ~~~~~~~~~~~~~~P~sl~eal~ll~~~~~a~lvaGgTdl~v~~k~~~~~~~~lIdl~~v~EL~~I~~~~~~l~IGA~vT 341 (1172)
++.+++ .-.-|+.|.+.+ + .-...++++|+.+++.-. . ...+| + ..+++.++.+++.|+.||++.
T Consensus 12 t~~iGG-~A~~~~~~~~~~-l------~~p~~vlG~GSNlLv~D~--g--~~~vv-~--~~~~~~~~~~~~~v~~~AG~~ 76 (257)
T PRK13904 12 SVKIGP-PLEVLVLEEIDD-F------SQDGQIIGGANNLLISPN--P--KNLAI-L--GKNFDYIKIDGECLEIGGATK 76 (257)
T ss_pred ceeECc-eEEEEEEechhh-h------CCCeEEEeceeEEEEecC--C--ccEEE-E--ccCcCeEEEeCCEEEEEcCCc
Confidence 455665 334566777776 4 224789999999988432 1 34555 2 234677777888999999999
Q ss_pred HHHHHHHHHHhhhcCCCCccchHHHHHHHHHHhcccccccccccccccc-ccCC-CCChhHHHHhcCCEEEEEeCCCCeE
Q 001052 342 LTELLKMFRKVVTERPAHETSSCKAFIEQIKWFAGTQIKNVASVGGNIC-TASP-ISDLNPLWMASGAKFHIVDCKGNIR 419 (1172)
Q Consensus 342 l~~l~~~l~~~~~~~~~~~~~~~~~L~~~l~~ias~qIRN~aTiGGNI~-~asp-~sD~~~~Llal~A~v~l~s~~g~~R 419 (1172)
+.++.....+ ..+. -+...++.+ |||||-+. ||.- -.++.-.+. +|++.+ +
T Consensus 77 l~~l~~~~~~--~gl~------------GlE~l~gIP----GtVGGAv~mNaGa~g~ei~d~l~----~V~~~~--~--- 129 (257)
T PRK13904 77 SGKIFNYAKK--NNLG------------GFEFLGKLP----GTLGGLVKMNAGLKEYEISNNLE----SICTNG--G--- 129 (257)
T ss_pred HHHHHHHHHH--CCCc------------hhhhhcCCC----ccHHHHHHhcCCcCccchheeEE----EEEEEe--e---
Confidence 9999987422 1111 122223322 78888775 3322 122222221 233332 2
Q ss_pred EEehHhhhcccccccCCCCeEEEEEEccCC
Q 001052 420 TTMAEEFFLGYRKVDLTSGEILLSIFLPWT 449 (1172)
Q Consensus 420 ~vpl~dF~~g~~~t~L~~~Eil~~I~iP~~ 449 (1172)
+++-+|.--+||.+.++ .+|+++.+...
T Consensus 130 ~~~~~e~~f~YR~S~~~--~iIl~a~f~l~ 157 (257)
T PRK13904 130 WIEKEDIGFGYRSSGIN--GVILEARFKKT 157 (257)
T ss_pred EEeHHHCcccccCcCCC--cEEEEEEEEEC
Confidence 57788877789888876 37877776554
No 112
>TIGR02416 CO_dehy_Mo_lg carbon-monoxide dehydrogenase, large subunit. This model represents the large subunits of group of carbon-monoxide dehydrogenases that include molybdenum as part of the enzymatic cofactor. There are various forms of carbon-monoxide dehydrogenase; Salicibacter pomeroyi DSS-3, for example, has two forms. Note that, at least in some species, the active site Cys is modified with a selenium attached to (rather than replacing) the sulfur atom. This is termed selanylcysteine, and created post-translationally, in contrast to selenocysteine incorporation during translation as for many other selenoproteins.
Probab=74.97 E-value=5.8 Score=51.73 Aligned_cols=70 Identities=17% Similarity=0.226 Sum_probs=49.9
Q ss_pred CeEEEEEecCCCeEEEEeCCCCh-----HHHHHHHHHHhCCCCccEEEEeCc------cCCCCCCCCCcchHHHHHHHHH
Q 001052 785 HSSVVWTMDHGNEVHMISSTQAP-----QKHQKYVSHVLGLPMSKVVCKTKR------IGGGFGGKETRSAFIAAAAAVP 853 (1172)
Q Consensus 785 ~~a~A~~~~~~g~l~V~~stQ~p-----~~~r~~vA~~Lglp~~kV~V~~~~------vGGgFG~K~~~~~~~~~~aAla 853 (1172)
..+.+..+ .||.++|+++++.. +.+...+|+.||+|.++|+|...+ -+|.||++.+... -.++-.|
T Consensus 476 ~~a~v~l~-~dG~v~v~~g~~e~GQG~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~gt~~Sr~t~~~--G~Av~~A 552 (770)
T TIGR02416 476 DSCEIRIH-PTGSAIARMGTKSQGQGHETTYAQIIATELGIPAEDIMVEEGDTDTAPYGLGTYGSRSTPVA--GAATALA 552 (770)
T ss_pred ceEEEEEC-CCceEEEEECCCCCCCCchHHHHHHHHHHHCCCHHHEEEEecCCCCCCCCCCCchhHHHHHH--HHHHHHH
Confidence 45667776 47899999998755 556888999999999999999654 4678888865322 2233334
Q ss_pred HHhC
Q 001052 854 SFLL 857 (1172)
Q Consensus 854 A~k~ 857 (1172)
|+++
T Consensus 553 a~~l 556 (770)
T TIGR02416 553 ARKI 556 (770)
T ss_pred HHHH
Confidence 5554
No 113
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=71.82 E-value=8.4 Score=51.79 Aligned_cols=81 Identities=17% Similarity=0.081 Sum_probs=58.1
Q ss_pred CcceEEEEEECCEEEEecCCCCCCcHHHHHhhCC--C------CCcccC--ccCCCCCceEEEEeccccCCCcccceeec
Q 001052 16 GWTKEAILYVNGLRKVLPDGLAHLTLLEYLRDIG--L------TGTKLG--CGEGGCGACTVMVSRYDKKSKKCVHCAVN 85 (1172)
Q Consensus 16 ~~~~~i~~~~Ng~~~~~~~~~p~~~L~~~LR~~~--l------~g~k~g--C~~G~CGaCtV~~~~~~~~~~~~~~~~v~ 85 (1172)
.....++|++||++++. .++.||..-|-..| + .+...| |..|.|--|.|.||+-. .+. .-++
T Consensus 8 ~~~~~~~~~~dg~~~~~---~~g~t~a~al~a~g~~~~~~s~~~~~prg~~c~~~~~~~c~v~i~~~~--~~~---~~~~ 79 (985)
T TIGR01372 8 DRSRPLRFTFDGKSYSG---FAGDTLASALLANGVHLVGRSFKYHRPRGILTAGVEEPNALVTVGSGA--QRE---PNTR 79 (985)
T ss_pred CCCCeEEEEECCEEeec---CCCCHHHHHHHhCCCeeecccCCCCCCCcccccCccCCCeEEEECCCc--CCC---CCcc
Confidence 34568999999999864 58899988775422 1 223334 98888999999998510 000 2378
Q ss_pred ccccchhccCCceEEEeeccc
Q 001052 86 ACLAPLYSLEGMHVITVEGVG 106 (1172)
Q Consensus 86 sCl~~~~~~~g~~i~T~Egl~ 106 (1172)
+|++++. +|..|.|.-+..
T Consensus 80 ac~~~~~--~gm~~~~~~~~~ 98 (985)
T TIGR01372 80 ATTQELY--DGLVATSQNRWP 98 (985)
T ss_pred ceeEEcc--cCCEEecccCCC
Confidence 9999986 899999987654
No 114
>TIGR02965 xanthine_xdhB xanthine dehydrogenase, molybdopterin binding subunit. Members of the protein family are the molybdopterin-containing large subunit (or, in, eukaryotes, the molybdopterin-binding domain) of xanthine dehydrogenase, and enzyme that reduces the purine pool by catabolizing xanthine to urate. This model is based primarily on bacterial sequences; it does not manage to include all eukaryotic xanthine dehydrogenases and thereby discriminate them from the closely related enzyme aldehyde dehydrogenase.
Probab=68.83 E-value=10 Score=49.52 Aligned_cols=59 Identities=8% Similarity=0.134 Sum_probs=45.5
Q ss_pred CCCeEEEEEecCCCeEEEEeCCCCh-----HHHHHHHHHHhCCCCccEEEEe------CccCCCCCCCCCc
Q 001052 783 EPHSSVVWTMDHGNEVHMISSTQAP-----QKHQKYVSHVLGLPMSKVVCKT------KRIGGGFGGKETR 842 (1172)
Q Consensus 783 Ep~~a~A~~~~~~g~l~V~~stQ~p-----~~~r~~vA~~Lglp~~kV~V~~------~~vGGgFG~K~~~ 842 (1172)
.+..+....+ .||.++|+++++.. +.+...+|+.||+|.++|+|.. +..+|.+|++.+.
T Consensus 446 ~~~~a~v~i~-~dG~v~v~~g~~e~GQG~~T~laQIaAe~LGi~~d~V~v~~~DT~~~p~~~gT~gSr~t~ 515 (758)
T TIGR02965 446 NQAGALVHVY-TDGSIHLNHGGTEMGQGLNTKVAQVVAEEFQVDIDRVKITATDTDKVPNTSATAASSGSD 515 (758)
T ss_pred CccceEEEEe-CCCcEEEEECCCCCCCCHHHHHHHHHHHHhCCCHHHEEEEecCccCCCCCCCCchHHHHH
Confidence 3455677776 47899999999654 4567889999999999999985 4556778888653
No 115
>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function. Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.
Probab=65.63 E-value=22 Score=32.37 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=38.8
Q ss_pred eEEEEeeCCeEEEEeCCccCCCChHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Q 001052 1057 ALVHVYTDGTVLVTHGGVEMGQGLHTKVAQVAASAFNIPLSSVFVSETSTDK 1108 (1172)
Q Consensus 1057 a~V~v~~DGsV~V~~g~~e~GQG~~T~~~QIaAe~Lgip~e~V~v~~~dT~~ 1108 (1172)
....++.||.+.|........-=.+..+....|+.||+|..+|+|..+.|..
T Consensus 18 ~i~~~~~~~~l~i~v~app~~GkAN~ali~~La~~l~v~ks~i~i~~G~~Sr 69 (77)
T PF02594_consen 18 AIVGVEGDGALKIRVTAPPVDGKANKALIRFLAKALGVPKSDIEIVSGHTSR 69 (77)
T ss_dssp EEEEE-TTT-EEEEBSTTCCCCCHHHHHHHHHHHHCT--TTCEEECC-CCCS
T ss_pred ccccccCceEEEEEEecCCCcChhHHHHHHHHHHHhCCCcccEEEEecCCCC
Confidence 3446766689999988877765689999999999999999999999887653
No 116
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=65.53 E-value=13 Score=32.63 Aligned_cols=38 Identities=16% Similarity=0.174 Sum_probs=28.2
Q ss_pred EEEEECCEEEEecCCCCCCcHHHHHhhCCCCCcccCccCCCCCceEEEEec
Q 001052 21 AILYVNGLRKVLPDGLAHLTLLEYLRDIGLTGTKLGCGEGGCGACTVMVSR 71 (1172)
Q Consensus 21 i~~~~Ng~~~~~~~~~p~~~L~~~LR~~~l~g~k~gC~~G~CGaCtV~~~~ 71 (1172)
+.++|||+++++. ..+||.++|...++.. .+ |.|.+|+
T Consensus 1 m~i~vNg~~~~~~---~~~tl~~ll~~l~~~~--~~--------vaVavN~ 38 (66)
T PRK08053 1 MQILFNDQPMQCA---AGQTVHELLEQLNQLQ--PG--------AALAINQ 38 (66)
T ss_pred CEEEECCeEEEcC---CCCCHHHHHHHcCCCC--Cc--------EEEEECC
Confidence 3579999999874 5789999998776642 11 6788875
No 117
>PF02738 Ald_Xan_dh_C2: Molybdopterin-binding domain of aldehyde dehydrogenase; InterPro: IPR008274 Aldehyde oxidase (1.2.3.1 from EC) catalyses the conversion of an aldehyde in the presence of oxygen and water to an acid and hydrogen peroxide. The enzyme is a homodimer, and requires FAD, molybdenum and two 2FE-2S clusters as cofactors. Xanthine dehydrogenase (1.1.1.204 from EC) catalyses the hydrogenation of xanthine to urate, and also requires FAD, molybdenum and two 2FE-2S clusters as cofactors. This activity is often found in a bifunctional enzyme with xanthine oxidase (1.1.3.22 from EC) activity too. The enzyme can be converted from the dehydrogenase form to the oxidase form irreversibly by proteolysis or reversibly through oxidation of sulphydryl groups.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3NVZ_C 3NVY_C 1FO4_B 3NRZ_L 3AM9_A 3B9J_C 3AX7_B 3NVW_L 3BDJ_A 3ETR_N ....
Probab=65.14 E-value=20 Score=44.90 Aligned_cols=48 Identities=27% Similarity=0.264 Sum_probs=35.1
Q ss_pred ccccceEEEEeeCCeEEEEeCCccCCCChHHHHHHHHHHHhCCCCCcEEEEeC
Q 001052 1052 MNQAGALVHVYTDGTVLVTHGGVEMGQGLHTKVAQVAASAFNIPLSSVFVSET 1104 (1172)
Q Consensus 1052 ~~~~~a~V~v~~DGsV~V~~g~~e~GQG~~T~~~QIaAe~Lgip~e~V~v~~~ 1104 (1172)
+.+..+....+.||.++|.++. |. -..+...+|+.||+|+++|+|...
T Consensus 48 mEp~~~~A~~~~~g~l~v~~~t----Q~-p~~~r~~va~~lglp~~~V~V~~~ 95 (547)
T PF02738_consen 48 MEPHGAVAWWDEDGRLTVWSST----QW-PFHVRRAVAEALGLPPEKVRVISP 95 (547)
T ss_dssp SS-SEEEEEEETTTEEEEEES-----SS-HHHHHHHHHHHHTS-GGGEEEEES
T ss_pred CCCCeEEEEEccCCCEEEEECC----cC-HhHHHHHHhhhhcCChhHEEEeee
Confidence 3445566676669999999875 33 356677889999999999999954
No 118
>PRK07440 hypothetical protein; Provisional
Probab=62.76 E-value=12 Score=33.46 Aligned_cols=29 Identities=24% Similarity=0.408 Sum_probs=23.9
Q ss_pred EEEEEECCEEEEecCCCCCCcHHHHHhhCCCC
Q 001052 20 EAILYVNGLRKVLPDGLAHLTLLEYLRDIGLT 51 (1172)
Q Consensus 20 ~i~~~~Ng~~~~~~~~~p~~~L~~~LR~~~l~ 51 (1172)
.+.++|||+++++. ..+||.++|++.++.
T Consensus 4 ~m~i~vNG~~~~~~---~~~tl~~lL~~l~~~ 32 (70)
T PRK07440 4 PITLQVNGETRTCS---SGTSLPDLLQQLGFN 32 (70)
T ss_pred ceEEEECCEEEEcC---CCCCHHHHHHHcCCC
Confidence 47789999998764 579999999987764
No 119
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=60.41 E-value=15 Score=50.72 Aligned_cols=60 Identities=18% Similarity=0.162 Sum_probs=47.1
Q ss_pred CCCCeEEEEEecCCCeEEEEeCCCCh-----HHHHHHHHHHhCCCCccEEEEeCc------cCCCCCCCCCc
Q 001052 782 LEPHSSVVWTMDHGNEVHMISSTQAP-----QKHQKYVSHVLGLPMSKVVCKTKR------IGGGFGGKETR 842 (1172)
Q Consensus 782 mEp~~a~A~~~~~~g~l~V~~stQ~p-----~~~r~~vA~~Lglp~~kV~V~~~~------vGGgFG~K~~~ 842 (1172)
+....+++..+ .||.++|+++++.. +.+...+|+.||||.++|+|...+ -+|.+|++.+.
T Consensus 1015 ~~~~~a~v~i~-~DGsV~V~~G~~e~GQG~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~gt~gSr~t~ 1085 (1330)
T TIGR02969 1015 MGQAAALVHIY-LDGSVLVTHGGIEMGQGVHTKMIQVVSRELKMPMSNVHLRGTSTETVPNTNASGGSVVAD 1085 (1330)
T ss_pred CCCccEEEEEc-CCceEEEEECCcCcCCChHHHHHHHHHHHhCCCHHHEEEEcCCCCCCCCCCCCchHHHHH
Confidence 44567777776 47899999998655 456788999999999999998654 47888888653
No 120
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=60.17 E-value=5.1 Score=45.09 Aligned_cols=28 Identities=32% Similarity=0.749 Sum_probs=21.6
Q ss_pred HHHHHhhCCCC--------CcccCccCCCCCceEEE
Q 001052 41 LLEYLRDIGLT--------GTKLGCGEGGCGACTVM 68 (1172)
Q Consensus 41 L~~~LR~~~l~--------g~k~gC~~G~CGaCtV~ 68 (1172)
+.+.|++.|+. .++..||.|.||+|.|-
T Consensus 205 ~~~~L~~~Gv~~~~i~~~~~~~m~cg~g~c~~c~~~ 240 (261)
T TIGR02911 205 TVQELLKKGIKEENIWVSYERKMCCGVGKCGHCKID 240 (261)
T ss_pred HHHHHHHcCCCHHHEEEEeccceeccCcCCCCcccC
Confidence 45566666653 57889999999999885
No 121
>PLN02906 xanthine dehydrogenase
Probab=58.60 E-value=21 Score=49.50 Aligned_cols=60 Identities=10% Similarity=0.142 Sum_probs=46.3
Q ss_pred CCCCeEEEEEecCCCeEEEEeCCCCh-----HHHHHHHHHHhCCCCccEEEEe------CccCCCCCCCCCc
Q 001052 782 LEPHSSVVWTMDHGNEVHMISSTQAP-----QKHQKYVSHVLGLPMSKVVCKT------KRIGGGFGGKETR 842 (1172)
Q Consensus 782 mEp~~a~A~~~~~~g~l~V~~stQ~p-----~~~r~~vA~~Lglp~~kV~V~~------~~vGGgFG~K~~~ 842 (1172)
+.+..+.+..+ .||.++|+++++.. +.+...+|+.||+|.++|+|.. +.-+|.+|++.+.
T Consensus 1010 ~~~~~a~V~i~-~DGsV~V~~G~~e~GQG~~T~~aQiaAe~LGip~d~V~v~~~DT~~~p~~~gT~aSr~t~ 1080 (1319)
T PLN02906 1010 MNQAGALVHVY-TDGTVLVTHGGVEMGQGLHTKVAQVAASAFNIPLSSVFISETSTDKVPNASPTAASASSD 1080 (1319)
T ss_pred CCccceEEEEc-CCceEEEEECCccCCCChHHHHHHHHHHHHCCCHHHEEEEccCCCCCCCCCCCccchhhH
Confidence 45566777776 47899999987543 4457889999999999999986 4457888888764
No 122
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=58.52 E-value=18 Score=33.51 Aligned_cols=33 Identities=9% Similarity=0.069 Sum_probs=26.9
Q ss_pred CcceEEEEEECCEEEEecCCCCCCcHHHHHhhCCCC
Q 001052 16 GWTKEAILYVNGLRKVLPDGLAHLTLLEYLRDIGLT 51 (1172)
Q Consensus 16 ~~~~~i~~~~Ng~~~~~~~~~p~~~L~~~LR~~~l~ 51 (1172)
+..+.+.++|||++++++ ...||.++|..+++.
T Consensus 14 ~~~~~m~I~VNG~~~~~~---~~~tl~~LL~~l~~~ 46 (84)
T PRK06083 14 AAMVLITISINDQSIQVD---ISSSLAQIIAQLSLP 46 (84)
T ss_pred CCCceEEEEECCeEEEcC---CCCcHHHHHHHcCCC
Confidence 556788999999998864 578999999887664
No 123
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=57.65 E-value=16 Score=32.56 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=26.1
Q ss_pred eEEEEEECCEEEEecCCCCCCcHHHHHhhCCCCCc
Q 001052 19 KEAILYVNGLRKVLPDGLAHLTLLEYLRDIGLTGT 53 (1172)
Q Consensus 19 ~~i~~~~Ng~~~~~~~~~p~~~L~~~LR~~~l~g~ 53 (1172)
|.+++.+||+++++. ..+|+.++|++.++..-
T Consensus 1 ~~m~i~~ng~~~e~~---~~~tv~dLL~~l~~~~~ 32 (68)
T COG2104 1 MPMTIQLNGKEVEIA---EGTTVADLLAQLGLNPE 32 (68)
T ss_pred CcEEEEECCEEEEcC---CCCcHHHHHHHhCCCCc
Confidence 467889999999874 44999999999888764
No 124
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=57.56 E-value=13 Score=32.49 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=22.9
Q ss_pred EEEEECCEEEEecCCCCCCcHHHHHhhCCCC
Q 001052 21 AILYVNGLRKVLPDGLAHLTLLEYLRDIGLT 51 (1172)
Q Consensus 21 i~~~~Ng~~~~~~~~~p~~~L~~~LR~~~l~ 51 (1172)
+.++|||+++++. +++||.++|...++.
T Consensus 1 m~i~vNG~~~~~~---~~~tl~~ll~~l~~~ 28 (65)
T PRK05863 1 MIVVVNEEQVEVD---EQTTVAALLDSLGFP 28 (65)
T ss_pred CEEEECCEEEEcC---CCCcHHHHHHHcCCC
Confidence 3579999998764 579999999987764
No 125
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=55.26 E-value=4.7 Score=44.98 Aligned_cols=31 Identities=29% Similarity=0.747 Sum_probs=22.0
Q ss_pred HHHHHhhCCCC-----CcccCccCCCCCceEEEEec
Q 001052 41 LLEYLRDIGLT-----GTKLGCGEGGCGACTVMVSR 71 (1172)
Q Consensus 41 L~~~LR~~~l~-----g~k~gC~~G~CGaCtV~~~~ 71 (1172)
+...|++.|+. -...+||.|.||+|.|.+++
T Consensus 196 v~~~l~~~Gv~~~~~~e~~m~cg~G~C~~C~~~~~~ 231 (250)
T PRK00054 196 VVEILKEKKVPAYVSLERRMKCGIGACGACVCDTET 231 (250)
T ss_pred HHHHHHHcCCcEEEEEcccccCcCcccCcCCcccCC
Confidence 55666665532 12458999999999998765
No 126
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=53.38 E-value=7.5 Score=43.48 Aligned_cols=28 Identities=29% Similarity=0.788 Sum_probs=22.3
Q ss_pred HHHHHhhCCCC--------CcccCccCCCCCceEEE
Q 001052 41 LLEYLRDIGLT--------GTKLGCGEGGCGACTVM 68 (1172)
Q Consensus 41 L~~~LR~~~l~--------g~k~gC~~G~CGaCtV~ 68 (1172)
+.++|++.|+. .++..|++|-||+|.|.
T Consensus 205 ~~~~L~~~Gv~~~~i~~~~~~~~~~~~g~c~~c~~~ 240 (253)
T cd06221 205 VAKELLKLGVPEEQIWVSLERRMKCGVGKCGHCQIG 240 (253)
T ss_pred HHHHHHHcCCCHHHEEEehhhccccCCccccCcccC
Confidence 45677665654 67889999999999986
No 127
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=52.30 E-value=17 Score=31.55 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=23.1
Q ss_pred EEEECCEEEEecCCCCCCcHHHHHhhCCCCCc
Q 001052 22 ILYVNGLRKVLPDGLAHLTLLEYLRDIGLTGT 53 (1172)
Q Consensus 22 ~~~~Ng~~~~~~~~~p~~~L~~~LR~~~l~g~ 53 (1172)
.++|||+++++. ..+||.++|...++...
T Consensus 2 ~i~vNG~~~~~~---~~~tl~~lL~~l~~~~~ 30 (66)
T PRK05659 2 NIQLNGEPRELP---DGESVAALLAREGLAGR 30 (66)
T ss_pred EEEECCeEEEcC---CCCCHHHHHHhcCCCCC
Confidence 589999998764 57899999988776543
No 128
>PF10418 DHODB_Fe-S_bind: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; InterPro: IPR019480 Lactococcus lactis is one of the few organisms with two dihydroorotate dehydrogenases (DHODs) A and B []. The B enzyme is typical of DHODs in Gram-positive bacteria that use NAD+ as the second substrate. DHODB is a heterotetramer composed of a central homodimer of PyrDB subunits resembling the DHODA structure and two PyrK subunits along with three different cofactors: FMN, FAD, and a [2Fe-2S] cluster. The [2Fe-2S] iron-sulphur cluster binds to this C-terminal domain of the PyrK subunit, which is at the interface between the flavin and NAD binding domains and contains three beta-strands. The four cysteine residues at the N-terminal part of this domain are the ones that bind, in pairs, to the iron-sulphur cluster. The conformation of the whole molecule means that the iron-sulphur cluster is localized in a well-ordered part of this domain close to the FAD binding site []. The FAD and NAD binding domains are IPR008333 from INTERPRO and IPR001433 from INTERPRO respectively. ; PDB: 1EP2_B 1EP3_B 1EP1_B.
Probab=52.22 E-value=8.2 Score=30.56 Aligned_cols=19 Identities=42% Similarity=1.111 Sum_probs=13.4
Q ss_pred cccCccCCCCCceEEEEec
Q 001052 53 TKLGCGEGGCGACTVMVSR 71 (1172)
Q Consensus 53 ~k~gC~~G~CGaCtV~~~~ 71 (1172)
.+.+|+-|.|++|.|-..+
T Consensus 2 ~~M~CG~G~C~~C~v~~~~ 20 (40)
T PF10418_consen 2 RRMACGVGACGGCVVPVKD 20 (40)
T ss_dssp ---SSSSSSS-TTEEECSS
T ss_pred CcccCCCcEeCCcEeeeec
Confidence 3568999999999998764
No 129
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=51.57 E-value=8.6 Score=42.57 Aligned_cols=18 Identities=44% Similarity=1.016 Sum_probs=15.2
Q ss_pred cccCccCCCCCceEEEEe
Q 001052 53 TKLGCGEGGCGACTVMVS 70 (1172)
Q Consensus 53 ~k~gC~~G~CGaCtV~~~ 70 (1172)
.+.+||.|.||+|+|..+
T Consensus 212 ~~m~Cg~G~C~~C~~~~~ 229 (243)
T cd06192 212 SPMCCGIGICGACTIETK 229 (243)
T ss_pred ccccCccccccceEEEeC
Confidence 456899999999999754
No 130
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=50.83 E-value=35 Score=30.29 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=30.2
Q ss_pred EEEEEECCE--EEEecCCCCCCcHHHHHhhCCCCCcccCccCCCCCceEEEEec
Q 001052 20 EAILYVNGL--RKVLPDGLAHLTLLEYLRDIGLTGTKLGCGEGGCGACTVMVSR 71 (1172)
Q Consensus 20 ~i~~~~Ng~--~~~~~~~~p~~~L~~~LR~~~l~g~k~gC~~G~CGaCtV~~~~ 71 (1172)
.++++|||+ +.+++ +++++|+.++|++.++.. -.+.|.+|+
T Consensus 4 mm~v~vng~~~~~~~~-~~~~~tv~~ll~~l~~~~----------~~v~v~vNg 46 (70)
T PRK08364 4 MIRVKVIGRGIEKEIE-WRKGMKVADILRAVGFNT----------ESAIAKVNG 46 (70)
T ss_pred EEEEEEeccccceEEE-cCCCCcHHHHHHHcCCCC----------ccEEEEECC
Confidence 478899999 44443 567899999999887753 126788875
No 131
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=48.76 E-value=88 Score=28.78 Aligned_cols=50 Identities=12% Similarity=0.284 Sum_probs=38.6
Q ss_pred EEEEEEecCCcceEEEEEEEEEccCCCccccHHHHHHHhcCCCCCHHHHHHHHHhh
Q 001052 474 GMRVYLEEKDEEWVVSDALLVYGGVAPLSLSAKKTKTFIVGKSWSQELLQNALKIL 529 (1172)
Q Consensus 474 A~~~~~~~~~~~~~i~~~ria~Ggv~~~p~ra~~~E~~L~Gk~l~~~~l~~a~~~l 529 (1172)
.+.+.++ +| +|++++|.=--+.... ..++|+.|.|.+++.+.+.++++.+
T Consensus 19 ~v~~~V~-~G---~I~~i~i~gDf~~~~~--i~~le~~L~G~~~~~~~i~~~l~~~ 68 (86)
T PF10437_consen 19 EVHLNVK-NG---IIKDIKIYGDFFGPED--IEELEEALIGCPYDREAIKEALNSV 68 (86)
T ss_dssp EEEEEEE-TT---EEEEEEEEECBS-CCC--HHHHHHHHTTCBSSHHHHHHHHHHC
T ss_pred EEEEEEE-CC---EEEEEEEECCCCCchH--HHHHHHHHHhcCCCHHHHHHHHHHh
Confidence 3444555 44 8999999855555544 7899999999999999999999877
No 132
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=47.65 E-value=32 Score=29.86 Aligned_cols=36 Identities=31% Similarity=0.353 Sum_probs=27.1
Q ss_pred EEECCEEEEecCCCCCCcHHHHHhhCCCCCcccCccCCCCCceEEEEec
Q 001052 23 LYVNGLRKVLPDGLAHLTLLEYLRDIGLTGTKLGCGEGGCGACTVMVSR 71 (1172)
Q Consensus 23 ~~~Ng~~~~~~~~~p~~~L~~~LR~~~l~g~k~gC~~G~CGaCtV~~~~ 71 (1172)
++|||+.+++. ..+||.++|...++.. ..+.|.+|+
T Consensus 1 i~iNg~~~~~~---~~~tv~~ll~~l~~~~----------~~v~v~vN~ 36 (64)
T TIGR01683 1 ITVNGEPVEVE---DGLTLAALLESLGLDP----------RRVAVAVNG 36 (64)
T ss_pred CEECCeEEEcC---CCCcHHHHHHHcCCCC----------CeEEEEECC
Confidence 47999999874 5789999999877652 235777775
No 133
>PF08869 XisI: XisI protein; InterPro: IPR014968 The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required []. ; PDB: 3D7Q_A 2NWV_A 2NVM_A 2NLV_B.
Probab=47.59 E-value=20 Score=34.97 Aligned_cols=38 Identities=26% Similarity=0.539 Sum_probs=28.2
Q ss_pred ceEEEEe-eCCeEEEEeCCccCCCChHHHHHHHHHHH---hCCCCCcEEEEe
Q 001052 1056 GALVHVY-TDGTVLVTHGGVEMGQGLHTKVAQVAASA---FNIPLSSVFVSE 1103 (1172)
Q Consensus 1056 ~a~V~v~-~DGsV~V~~g~~e~GQG~~T~~~QIaAe~---Lgip~e~V~v~~ 1103 (1172)
++.++++ .||+|.|..-++|.| +|++ +|||.++|-+.-
T Consensus 56 g~~iH~dI~dgKIWIq~d~TE~g----------Ia~eLve~GVpk~dIVLgF 97 (111)
T PF08869_consen 56 GCLIHLDIKDGKIWIQRDGTEDG----------IAEELVEAGVPKEDIVLGF 97 (111)
T ss_dssp EEEEEEEEETTEEEEEEESSSSH----------HHHHHHHTT--GGGEEETT
T ss_pred EEEEEEEEECCeEEEEcCchhhH----------HHHHHHHcCCCHHHEEEcc
Confidence 4677776 799999999999976 3444 499999998763
No 134
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=43.88 E-value=30 Score=30.47 Aligned_cols=28 Identities=29% Similarity=0.330 Sum_probs=21.7
Q ss_pred EEEECCEEEEecCCCCCCcHHHHHhhCCCC
Q 001052 22 ILYVNGLRKVLPDGLAHLTLLEYLRDIGLT 51 (1172)
Q Consensus 22 ~~~~Ng~~~~~~~~~p~~~L~~~LR~~~l~ 51 (1172)
.++|||+++++. ++..||.++|...++.
T Consensus 2 ~I~vNG~~~~~~--~~~~tv~~lL~~l~~~ 29 (67)
T PRK07696 2 NLKINGNQIEVP--ESVKTVAELLTHLELD 29 (67)
T ss_pred EEEECCEEEEcC--CCcccHHHHHHHcCCC
Confidence 578999998774 2236899999887775
No 135
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=40.97 E-value=31 Score=29.84 Aligned_cols=27 Identities=19% Similarity=0.089 Sum_probs=21.8
Q ss_pred EEEECCEEEEecCCCCCCcHHHHHhhCCCC
Q 001052 22 ILYVNGLRKVLPDGLAHLTLLEYLRDIGLT 51 (1172)
Q Consensus 22 ~~~~Ng~~~~~~~~~p~~~L~~~LR~~~l~ 51 (1172)
.++|||+.+++ ++.+||.++|...++.
T Consensus 2 ~i~vNg~~~~~---~~~~tl~~ll~~l~~~ 28 (65)
T PRK06944 2 DIQLNQQTLSL---PDGATVADALAAYGAR 28 (65)
T ss_pred EEEECCEEEEC---CCCCcHHHHHHhhCCC
Confidence 58999999876 3678999999877663
No 136
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=39.62 E-value=11 Score=42.61 Aligned_cols=28 Identities=29% Similarity=0.668 Sum_probs=21.2
Q ss_pred HHHHHhhCCCC--------CcccCccCCCCCceEEE
Q 001052 41 LLEYLRDIGLT--------GTKLGCGEGGCGACTVM 68 (1172)
Q Consensus 41 L~~~LR~~~l~--------g~k~gC~~G~CGaCtV~ 68 (1172)
..+.|++.|+. .++-.||+|.||+|+|.
T Consensus 207 ~~~~L~~~Gv~~~~i~~~~~~~m~cg~g~c~~c~~~ 242 (263)
T PRK08221 207 TVLEFLKRGIKEENIWVSYERKMCCGVGKCGHCKID 242 (263)
T ss_pred HHHHHHHcCCCHHHEEEEecceeEccCcccCCcccC
Confidence 45566665664 46779999999999975
No 137
>PLN00192 aldehyde oxidase
Probab=39.51 E-value=66 Score=44.79 Aligned_cols=59 Identities=22% Similarity=0.160 Sum_probs=43.4
Q ss_pred ccccceEEEEeeCCeEEEEeCCccCCCChHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCCccCcccchh
Q 001052 1052 MNQAGALVHVYTDGTVLVTHGGVEMGQGLHTKVAQVAASAFNIPLSSVFVSETSTDKVPNASPTAASASS 1121 (1172)
Q Consensus 1052 ~~~~~a~V~v~~DGsV~V~~g~~e~GQG~~T~~~QIaAe~Lgip~e~V~v~~~dT~~~p~~~~t~~Sr~t 1121 (1172)
+...++....+.||.++|.++. |.. +.+...+|+.||+|.++|+|... .-++.+|++.+
T Consensus 761 mEp~~~vA~~~~dg~l~V~~sT----Q~p-~~~r~~vA~~Lgip~~~VrV~~~------~vGGgFGgK~~ 819 (1344)
T PLN00192 761 METQTALALPDEDNCIVVYSST----QCP-EYVHSVIARCLGIPEHNVRVITR------RVGGGFGGKAV 819 (1344)
T ss_pred ccCceEEEEEcCCCCEEEEECC----CCH-HHHHHHHHHHhCCChHHEEEEec------ccccCCCcccc
Confidence 3445566666678889999875 443 55667889999999999999954 45667777754
No 138
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=39.29 E-value=32 Score=38.67 Aligned_cols=50 Identities=32% Similarity=0.487 Sum_probs=37.6
Q ss_pred eEEEEEECCEE-EEecCCCCCCcHHHHHhhCCCCCcccCccC-CCCCceEEEEe
Q 001052 19 KEAILYVNGLR-KVLPDGLAHLTLLEYLRDIGLTGTKLGCGE-GGCGACTVMVS 70 (1172)
Q Consensus 19 ~~i~~~~Ng~~-~~~~~~~p~~~L~~~LR~~~l~g~k~gC~~-G~CGaCtV~~~ 70 (1172)
..+++.|||-+ ... .++++.+||.-|-..|+. +...||. |.||-|.|-|-
T Consensus 35 gd~ti~IN~d~e~~~-t~~aG~kLL~~L~~~gif-i~SaCGGggsC~QCkv~v~ 86 (410)
T COG2871 35 GDITIKINGDPEKTK-TVPAGGKLLGALASSGIF-ISSACGGGGSCGQCKVRVK 86 (410)
T ss_pred CceEEEeCCChhhce-ecCCchhHHHHHHhCCcc-cccCCCCCccccccEEEEe
Confidence 36788999832 334 378999999999887765 3456775 58999999885
No 139
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=38.36 E-value=65 Score=27.98 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=26.9
Q ss_pred EEECCEEEEecCCCCCCcHHHHHhhCCCCCcccCccCCCCCceEEEEec
Q 001052 23 LYVNGLRKVLPDGLAHLTLLEYLRDIGLTGTKLGCGEGGCGACTVMVSR 71 (1172)
Q Consensus 23 ~~~Ng~~~~~~~~~p~~~L~~~LR~~~l~g~k~gC~~G~CGaCtV~~~~ 71 (1172)
++|||+++++. ..+|+.++|...++.. ..|.|.+|+
T Consensus 2 i~iNg~~~~~~---~~~tv~~ll~~l~~~~----------~~i~V~vNg 37 (65)
T cd00565 2 ITVNGEPREVE---EGATLAELLEELGLDP----------RGVAVALNG 37 (65)
T ss_pred EEECCeEEEcC---CCCCHHHHHHHcCCCC----------CcEEEEECC
Confidence 68999999864 5789999998877542 235677775
No 140
>KOG3049 consensus Succinate dehydrogenase, Fe-S protein subunit [Energy production and conversion]
Probab=37.13 E-value=13 Score=39.70 Aligned_cols=46 Identities=22% Similarity=0.457 Sum_probs=32.5
Q ss_pred CCcHHHHHhh----C-CCCCcccCccCCCCCceEEEEeccccCCCcccceeecccccchhc
Q 001052 38 HLTLLEYLRD----I-GLTGTKLGCGEGGCGACTVMVSRYDKKSKKCVHCAVNACLAPLYS 93 (1172)
Q Consensus 38 ~~~L~~~LR~----~-~l~g~k~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~ 93 (1172)
+.++||-|-. . ---..+..|.||-||+|..-++| .-..+|+..+-+
T Consensus 76 GpMvLDALiKIKnE~DptLTFRRSCREGICGSCAMNI~G----------~NtLACi~kId~ 126 (288)
T KOG3049|consen 76 GPMVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNING----------TNTLACICKIDQ 126 (288)
T ss_pred chHHHHHHHHhhcccCCceehhhhhhccccccceeccCC----------CceeEEEEeecc
Confidence 5678887753 2 21235789999999999999987 235678766544
No 141
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=36.83 E-value=18 Score=40.37 Aligned_cols=31 Identities=35% Similarity=0.592 Sum_probs=22.9
Q ss_pred HHHHHhhCCCCC-----cccCccCCCCCceEEEEec
Q 001052 41 LLEYLRDIGLTG-----TKLGCGEGGCGACTVMVSR 71 (1172)
Q Consensus 41 L~~~LR~~~l~g-----~k~gC~~G~CGaCtV~~~~ 71 (1172)
+.++|++.|+.. .+.+||.|.||+|+|-.++
T Consensus 195 ~~~~l~~~Gv~~~~s~e~~m~Cg~G~C~~C~~~~~~ 230 (248)
T cd06219 195 VSELTRPYGIPTVVSLNPIMVDGTGMCGACRVTVGG 230 (248)
T ss_pred HHHHHHHcCCCEEEEecccccCccceeeeEEEEeCC
Confidence 456676655543 5678999999999998653
No 142
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=36.54 E-value=21 Score=40.87 Aligned_cols=31 Identities=32% Similarity=0.695 Sum_probs=23.0
Q ss_pred HHHHHhhCCCC--------CcccCccCCCCCceEEEEec
Q 001052 41 LLEYLRDIGLT--------GTKLGCGEGGCGACTVMVSR 71 (1172)
Q Consensus 41 L~~~LR~~~l~--------g~k~gC~~G~CGaCtV~~~~ 71 (1172)
+.+.|++.|+. ....+||-|.||+|+|-.++
T Consensus 227 v~~~L~~~Gv~~~~i~~~l~~~m~cg~g~c~~c~~~~~~ 265 (289)
T PRK08345 227 VFKELINRGYRPERIYVTLERRMRCGIGKCGHCIVGTST 265 (289)
T ss_pred HHHHHHHcCCCHHHEEEEehhcccccCcccCCCccCCCC
Confidence 55566666664 35678999999999998653
No 143
>PRK00647 hypothetical protein; Validated
Probab=35.26 E-value=87 Score=29.87 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=39.2
Q ss_pred eCCeEEEEeCCccCCCChHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Q 001052 1063 TDGTVLVTHGGVEMGQGLHTKVAQVAASAFNIPLSSVFVSETSTDK 1108 (1172)
Q Consensus 1063 ~DGsV~V~~g~~e~GQG~~T~~~QIaAe~Lgip~e~V~v~~~dT~~ 1108 (1172)
.+|.+.|..-+....--.+..+.+..|+.||+|..+|+|..+.|..
T Consensus 25 ~~~~Lkvrv~ApPvdGKAN~ali~~LAk~l~vpks~I~Iv~G~tSr 70 (96)
T PRK00647 25 EGGILKVRVTEVPEKGKANDAVIALLAKFLSLPKRDVTLIAGETSR 70 (96)
T ss_pred cCCEEEEEEecCCCCChHHHHHHHHHHHHhCCChhhEEEEecCCCC
Confidence 4678888887777765689999999999999999999999887754
No 144
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=31.87 E-value=45 Score=32.59 Aligned_cols=30 Identities=10% Similarity=0.277 Sum_probs=25.3
Q ss_pred ChHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Q 001052 1079 GLHTKVAQVAASAFNIPLSSVFVSETSTDK 1108 (1172)
Q Consensus 1079 G~~T~~~QIaAe~Lgip~e~V~v~~~dT~~ 1108 (1172)
-+...++..+++.||||+++|.|.-.|...
T Consensus 76 ~l~~~i~~~l~~~lgi~~~rv~I~f~~~~~ 105 (116)
T PTZ00397 76 SIAAAITKILASHLKVKSERVYIEFKDCSA 105 (116)
T ss_pred HHHHHHHHHHHHHhCcCcccEEEEEEECCh
Confidence 466788999999999999999998777644
No 145
>PRK05802 hypothetical protein; Provisional
Probab=31.75 E-value=28 Score=40.54 Aligned_cols=20 Identities=55% Similarity=1.054 Sum_probs=16.8
Q ss_pred CcccCccCCCCCceEEEEec
Q 001052 52 GTKLGCGEGGCGACTVMVSR 71 (1172)
Q Consensus 52 g~k~gC~~G~CGaCtV~~~~ 71 (1172)
..+-+||.|.||+|+|-.++
T Consensus 287 e~~M~CG~G~Cg~C~v~~~g 306 (320)
T PRK05802 287 NAKMCCGEGICGACTVRYGG 306 (320)
T ss_pred CCeeeCcCccCCeeEEEECC
Confidence 34789999999999998753
No 146
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=30.74 E-value=23 Score=39.00 Aligned_cols=30 Identities=33% Similarity=0.732 Sum_probs=21.1
Q ss_pred HHHHHhhCCC-----CCcccCccCCCCCceEEEEe
Q 001052 41 LLEYLRDIGL-----TGTKLGCGEGGCGACTVMVS 70 (1172)
Q Consensus 41 L~~~LR~~~l-----~g~k~gC~~G~CGaCtV~~~ 70 (1172)
+.+.|++.|+ .-....||.|.||+|.|-..
T Consensus 182 ~~~~L~~~g~~~~i~~e~f~~cg~g~C~~C~v~~~ 216 (233)
T cd06220 182 VLEILDERGVRAQFSLERYMKCGIGICGSCCIDPT 216 (233)
T ss_pred HHHHHHhcCCcEEEEecccccCcCCCcCccEeccC
Confidence 5556665444 22335899999999999874
No 147
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=30.33 E-value=70 Score=38.45 Aligned_cols=77 Identities=16% Similarity=0.163 Sum_probs=50.7
Q ss_pred ceEEecCCHHHHHHHHhhC----CCcEEEeccCcceeeeeeccccCceEEecCCcccccceeecCCcEEEcccccHHHHH
Q 001052 271 LKWYRPLKLQHLLELKSKY----PDSKLLVGNTEVGIEMRLKRMQYQVLISVTHVPELNVLNVKDDGLEIGAAVRLTELL 346 (1172)
Q Consensus 271 ~~~~~P~sl~eal~ll~~~----~~a~lvaGgTdl~v~~k~~~~~~~~lIdl~~v~EL~~I~~~~~~l~IGA~vTl~~l~ 346 (1172)
.++-.|+|++|+.++.+.. ...|.|. .++-+ ..-......+|++..+.---.+..+...+++=|++|+.||.
T Consensus 51 anv~yP~teaeL~~lVa~A~~a~~kirvVg--~gHSp--~~l~ctdg~lisl~~lnkVv~~dpe~~tvTV~aGirlrQLi 126 (518)
T KOG4730|consen 51 ANVNYPKTEAELVELVAAATEAGKKIRVVG--SGHSP--SKLVCTDGLLISLDKLNKVVEFDPELKTVTVQAGIRLRQLI 126 (518)
T ss_pred cccCCCCCHHHHHHHHHHHHHcCceEEEec--ccCCC--CcceeccccEEEhhhhccceeeCchhceEEeccCcCHHHHH
Confidence 3456799999999987764 2345554 33322 11111233688888876555555556778899999999999
Q ss_pred HHHHH
Q 001052 347 KMFRK 351 (1172)
Q Consensus 347 ~~l~~ 351 (1172)
+.+++
T Consensus 127 e~~~~ 131 (518)
T KOG4730|consen 127 EELAK 131 (518)
T ss_pred HHHHh
Confidence 98654
No 148
>PRK05090 hypothetical protein; Validated
Probab=29.85 E-value=1.2e+02 Score=28.85 Aligned_cols=46 Identities=11% Similarity=0.163 Sum_probs=38.3
Q ss_pred eCCeEEEEeCCccCCCChHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Q 001052 1063 TDGTVLVTHGGVEMGQGLHTKVAQVAASAFNIPLSSVFVSETSTDK 1108 (1172)
Q Consensus 1063 ~DGsV~V~~g~~e~GQG~~T~~~QIaAe~Lgip~e~V~v~~~dT~~ 1108 (1172)
.+|.+.|...+...--=.+..+....|+.||+|.++|++..+.|..
T Consensus 30 ~~~~lkv~v~ApPveGkAN~ali~~LAk~l~v~ks~I~i~~G~tsr 75 (95)
T PRK05090 30 HGDELKVAITAPPVDGQANAHLLKFLAKQFRVAKSQVVIEKGELGR 75 (95)
T ss_pred cCCEEEEEEecCCCCChHHHHHHHHHHHHhCCChhhEEEEecCCCC
Confidence 4678888877766654588999999999999999999999887754
No 149
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=29.77 E-value=59 Score=28.26 Aligned_cols=27 Identities=26% Similarity=0.261 Sum_probs=21.0
Q ss_pred EEEEECCEEEEecCCCCCCcHHHHHhhCCCC
Q 001052 21 AILYVNGLRKVLPDGLAHLTLLEYLRDIGLT 51 (1172)
Q Consensus 21 i~~~~Ng~~~~~~~~~p~~~L~~~LR~~~l~ 51 (1172)
+.++|||++++++ ..||.++|...++.
T Consensus 1 m~i~~Ng~~~~~~----~~tl~~Ll~~l~~~ 27 (65)
T PRK06488 1 MKLFVNGETLQTE----ATTLALLLAELDYE 27 (65)
T ss_pred CEEEECCeEEEcC----cCcHHHHHHHcCCC
Confidence 3579999999873 36899999887654
No 150
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=29.08 E-value=59 Score=39.46 Aligned_cols=48 Identities=29% Similarity=0.495 Sum_probs=38.1
Q ss_pred EEEEEECCEEEEecCCCCCCcHHHHHhhCCCCCcccCcc-CCCCCceEEEEecc
Q 001052 20 EAILYVNGLRKVLPDGLAHLTLLEYLRDIGLTGTKLGCG-EGGCGACTVMVSRY 72 (1172)
Q Consensus 20 ~i~~~~Ng~~~~~~~~~p~~~L~~~LR~~~l~g~k~gC~-~G~CGaCtV~~~~~ 72 (1172)
.+.|.=-||+.+ +..+|.|+.-|+.| -+++.-|| .|.||-|.|.|.+.
T Consensus 3 ~v~f~psgkr~~----~~g~~il~aar~~g-v~i~s~cggk~~cgkc~v~v~~g 51 (614)
T COG3894 3 LVTFMPSGKRGE----DEGTTILDAARRLG-VYIRSVCGGKGTCGKCQVVVQEG 51 (614)
T ss_pred eeEeecCCCcCC----CCCchHHHHHHhhC-ceEeeecCCCccccceEEEEEeC
Confidence 466777888865 45899999999987 45667787 69999999999763
No 151
>PRK01530 hypothetical protein; Reviewed
Probab=28.28 E-value=1.2e+02 Score=29.37 Aligned_cols=45 Identities=7% Similarity=0.051 Sum_probs=36.7
Q ss_pred CCeEEEEeCCccCCCChHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Q 001052 1064 DGTVLVTHGGVEMGQGLHTKVAQVAASAFNIPLSSVFVSETSTDK 1108 (1172)
Q Consensus 1064 DGsV~V~~g~~e~GQG~~T~~~QIaAe~Lgip~e~V~v~~~dT~~ 1108 (1172)
+|.+.|...+...--=.+..+....|+.||+|..+|++..+.|..
T Consensus 38 ~~~Lki~v~ApPvdGkAN~ali~~LAk~l~v~ks~I~IvsG~tSR 82 (105)
T PRK01530 38 IPYLKLSIKAIPEQGKANEEIINYLAKEWKLSRSNIEIIKGHTHS 82 (105)
T ss_pred CCEEEEEEecCCCCChHHHHHHHHHHHHhCCChhhEEEEecCCCC
Confidence 457777776665544488999999999999999999999887754
No 152
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=26.60 E-value=51 Score=32.34 Aligned_cols=48 Identities=19% Similarity=0.206 Sum_probs=32.4
Q ss_pred ceEEEEeeCCeEEEEeCCccCCCChHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Q 001052 1056 GALVHVYTDGTVLVTHGGVEMGQGLHTKVAQVAASAFNIPLSSVFVSETSTDK 1108 (1172)
Q Consensus 1056 ~a~V~v~~DGsV~V~~g~~e~GQG~~T~~~QIaAe~Lgip~e~V~v~~~dT~~ 1108 (1172)
.|.++|..=|.+. .+-=+.+...++++..++||||.++|.|.-.|...
T Consensus 58 ~A~~~l~siG~~~-----~~~n~~~s~~i~~~l~~~LgIp~dRiYI~f~d~~~ 105 (113)
T PTZ00450 58 AAYVRVEAWGEYA-----PSKPKMMTPRITAAITKECGIPAERIYVFYYSTKH 105 (113)
T ss_pred EEEEEEEEecCcC-----HHHHHHHHHHHHHHHHHHcCCCcccEEEEEEcHHH
Confidence 4677775333331 11112356788999999999999999999887533
No 153
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=23.99 E-value=54 Score=37.29 Aligned_cols=30 Identities=33% Similarity=0.612 Sum_probs=21.9
Q ss_pred HHHHHhhCCC-----CCcccCccCCCCCceEEEEe
Q 001052 41 LLEYLRDIGL-----TGTKLGCGEGGCGACTVMVS 70 (1172)
Q Consensus 41 L~~~LR~~~l-----~g~k~gC~~G~CGaCtV~~~ 70 (1172)
+.+.|++.|+ -..+.+||.|.||.|+|-..
T Consensus 196 v~~~l~~~gv~~~~sle~~M~CG~G~C~~C~v~~~ 230 (281)
T PRK06222 196 VAELTKPYGIKTIVSLNPIMVDGTGMCGACRVTVG 230 (281)
T ss_pred HHHHHHhcCCCEEEECcccccCcccccceeEEEEC
Confidence 4566666554 34677999999999999653
No 154
>PF03990 DUF348: Domain of unknown function (DUF348) ; InterPro: IPR007137 This domain normally occurs as tandem repeats; however it is found as a single copy in the Saccharomyces cerevisiae (Baker's yeast) DNA-binding nuclear protein YCR593 (P25357 from SWISSPROT).
Probab=23.64 E-value=1.3e+02 Score=24.06 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=24.7
Q ss_pred EEEEECCEEEEecCCCCCCcHHHHHhhCCCC
Q 001052 21 AILYVNGLRKVLPDGLAHLTLLEYLRDIGLT 51 (1172)
Q Consensus 21 i~~~~Ng~~~~~~~~~p~~~L~~~LR~~~l~ 51 (1172)
+++.+||+...+. ....|.-++|.++|++
T Consensus 2 Vtv~~dG~~~~v~--T~a~tV~~~L~~~gI~ 30 (43)
T PF03990_consen 2 VTVTVDGKEKTVY--TTASTVGDALKELGIT 30 (43)
T ss_pred EEEEECCEEEEEE--eCCCCHHHHHHhCCCC
Confidence 6789999999886 4678999999988765
No 155
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=22.06 E-value=1.9e+02 Score=29.93 Aligned_cols=49 Identities=24% Similarity=0.416 Sum_probs=37.9
Q ss_pred eEEEEEE-CCEEEEecCCCCCCcHHHHHhhC--CCCCcccCccC-CCCCceEEEEec
Q 001052 19 KEAILYV-NGLRKVLPDGLAHLTLLEYLRDI--GLTGTKLGCGE-GGCGACTVMVSR 71 (1172)
Q Consensus 19 ~~i~~~~-Ng~~~~~~~~~p~~~L~~~LR~~--~l~g~k~gC~~-G~CGaCtV~~~~ 71 (1172)
-+|+|.. ||+++.+. +..+.+||+...++ -|-| .|+. =.|--|-|+|+.
T Consensus 44 i~Itfv~~dG~~~~i~-g~vGdtlLd~ah~n~idleG---ACEgslACSTCHViv~~ 96 (159)
T KOG3309|consen 44 IKITFVDPDGEEIKIK-GKVGDTLLDAAHENNLDLEG---ACEGSLACSTCHVIVDE 96 (159)
T ss_pred EEEEEECCCCCEEEee-eecchHHHHHHHHcCCCccc---cccccccccceEEEEcH
Confidence 3454443 79999997 78899999999975 6666 6764 489999999975
No 156
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=21.83 E-value=61 Score=43.78 Aligned_cols=31 Identities=32% Similarity=0.578 Sum_probs=23.1
Q ss_pred HHHHHhhCCC-----CCcccCccCCCCCceEEEEec
Q 001052 41 LLEYLRDIGL-----TGTKLGCGEGGCGACTVMVSR 71 (1172)
Q Consensus 41 L~~~LR~~~l-----~g~k~gC~~G~CGaCtV~~~~ 71 (1172)
+..+|++.|+ --....||.|.||+|.|-+++
T Consensus 196 v~~~~~~~gi~~~vSle~~M~cG~G~Cg~C~v~~~~ 231 (1006)
T PRK12775 196 CVETTRPFGVKTMVSLNAIMVDGTGMCGSCRVTVGG 231 (1006)
T ss_pred HHHHHHHCCCcEEECChhheeCccceeCCCEeeeCC
Confidence 4456666676 455678999999999998753
No 157
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=21.26 E-value=76 Score=26.51 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=14.1
Q ss_pred HHHHHHcCCCHHHHHHH
Q 001052 966 QRVAVEVRKSPEEIREI 982 (1172)
Q Consensus 966 DelA~~lg~DP~e~R~~ 982 (1172)
.+||+.+|++|..+|+.
T Consensus 32 ~~La~~~gi~~~qVRKD 48 (50)
T PF06971_consen 32 QELAEALGITPAQVRKD 48 (50)
T ss_dssp HHHHHHHTS-HHHHHHH
T ss_pred HHHHHHHCCCHHHhccc
Confidence 48999999999999974
No 158
>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function. Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.
Probab=20.24 E-value=2.4e+02 Score=25.68 Aligned_cols=43 Identities=12% Similarity=0.261 Sum_probs=28.9
Q ss_pred eEEEEEecCCCeEEEEeCCCCh-----HHHHHHHHHHhCCCCccEEEEe
Q 001052 786 SSVVWTMDHGNEVHMISSTQAP-----QKHQKYVSHVLGLPMSKVVCKT 829 (1172)
Q Consensus 786 ~a~A~~~~~~g~l~V~~stQ~p-----~~~r~~vA~~Lglp~~kV~V~~ 829 (1172)
..+.-+. +++.|.|....+-. ..+...+|+.||+|.++|++..
T Consensus 17 ~~i~~~~-~~~~l~i~v~app~~GkAN~ali~~La~~l~v~ks~i~i~~ 64 (77)
T PF02594_consen 17 NAIVGVE-GDGALKIRVTAPPVDGKANKALIRFLAKALGVPKSDIEIVS 64 (77)
T ss_dssp -EEEEE--TTT-EEEEBSTTCCCCCHHHHHHHHHHHHCT--TTCEEECC
T ss_pred ccccccc-CceEEEEEEecCCCcChhHHHHHHHHHHHhCCCcccEEEEe
Confidence 3454444 23578888877644 6788999999999999999975
Done!