Query 001054
Match_columns 1171
No_of_seqs 634 out of 2668
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 08:39:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001054.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001054hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wjy_A Regulator of nonsense t 100.0 1E-131 4E-136 1240.6 55.7 694 138-836 2-800 (800)
2 2xzl_A ATP-dependent helicase 100.0 4E-130 1E-134 1227.8 52.8 692 137-835 6-801 (802)
3 2gk6_A Regulator of nonsense t 100.0 6.2E-90 2.1E-94 845.6 45.4 603 230-836 20-624 (624)
4 4b3f_X DNA-binding protein smu 100.0 1.2E-80 4.1E-85 766.0 44.2 557 249-823 47-637 (646)
5 3e1s_A Exodeoxyribonuclease V, 100.0 6.9E-32 2.4E-36 328.0 11.6 290 389-801 188-544 (574)
6 3lfu_A DNA helicase II; SF1 he 100.0 3.8E-31 1.3E-35 324.2 16.0 311 389-729 8-367 (647)
7 1pjr_A PCRA; DNA repair, DNA r 100.0 1.6E-29 5.4E-34 315.4 12.9 309 389-729 10-371 (724)
8 3upu_A ATP-dependent DNA helic 100.0 4.7E-29 1.6E-33 295.5 12.3 184 387-639 22-212 (459)
9 1w36_D RECD, exodeoxyribonucle 100.0 8.3E-29 2.8E-33 303.2 13.5 348 392-800 151-585 (608)
10 1uaa_A REP helicase, protein ( 100.0 3.6E-28 1.2E-32 300.4 17.3 301 390-722 2-355 (673)
11 3u4q_A ATP-dependent helicase/ 99.9 2.7E-23 9.4E-28 272.5 10.8 67 388-456 8-79 (1232)
12 3vkw_A Replicase large subunit 99.8 2.4E-21 8.4E-26 226.8 12.6 272 405-816 161-435 (446)
13 1w36_B RECB, exodeoxyribonucle 99.8 1.4E-21 4.9E-26 255.4 8.9 169 551-730 377-572 (1180)
14 3dmn_A Putative DNA helicase; 99.5 3.9E-15 1.3E-19 154.4 6.8 146 621-798 2-154 (174)
15 3u4q_B ATP-dependent helicase/ 99.3 6.1E-12 2.1E-16 164.8 11.3 148 552-733 202-367 (1166)
16 2gxq_A Heat resistant RNA depe 98.6 1.2E-07 4.1E-12 98.6 11.7 69 389-457 22-95 (207)
17 2fz4_A DNA repair protein RAD2 98.6 1.2E-07 4E-12 102.7 11.4 74 389-466 92-166 (237)
18 3b6e_A Interferon-induced heli 98.6 5.2E-08 1.8E-12 101.6 7.8 68 389-456 32-105 (216)
19 1rif_A DAR protein, DNA helica 98.6 1.5E-07 5.1E-12 103.8 11.2 69 390-458 113-181 (282)
20 1vec_A ATP-dependent RNA helic 98.6 1.2E-07 4.2E-12 98.7 9.6 70 388-457 23-94 (206)
21 1t6n_A Probable ATP-dependent 98.6 3.5E-07 1.2E-11 96.5 12.8 69 389-457 35-105 (220)
22 1qde_A EIF4A, translation init 98.5 1.9E-07 6.5E-12 98.6 10.2 69 389-457 35-105 (224)
23 1wrb_A DJVLGB; RNA helicase, D 98.5 9E-07 3.1E-11 95.6 14.8 72 386-457 41-123 (253)
24 2pl3_A Probable ATP-dependent 98.5 4E-07 1.4E-11 97.2 11.9 70 388-457 45-120 (236)
25 3iuy_A Probable ATP-dependent 98.5 3.7E-07 1.3E-11 97.0 11.5 69 389-457 41-117 (228)
26 3ber_A Probable ATP-dependent 98.5 5.8E-07 2E-11 97.6 12.9 70 388-457 63-134 (249)
27 1hv8_A Putative ATP-dependent 98.5 6E-07 2.1E-11 100.6 12.1 69 389-457 27-97 (367)
28 2oxc_A Probable ATP-dependent 98.4 5.6E-07 1.9E-11 96.1 10.8 69 389-457 45-115 (230)
29 3bor_A Human initiation factor 98.4 4.2E-07 1.4E-11 97.6 9.7 69 389-457 51-121 (237)
30 1wp9_A ATP-dependent RNA helic 98.4 7.5E-07 2.6E-11 102.7 12.2 67 390-457 9-75 (494)
31 3fe2_A Probable ATP-dependent 98.4 1E-06 3.6E-11 94.7 12.4 69 388-456 49-124 (242)
32 3ly5_A ATP-dependent RNA helic 98.4 1E-06 3.5E-11 96.4 11.9 69 389-457 75-149 (262)
33 2z0m_A 337AA long hypothetical 98.4 1.4E-06 4.7E-11 96.6 13.0 65 389-457 15-79 (337)
34 2oca_A DAR protein, ATP-depend 98.4 7.1E-07 2.4E-11 106.1 10.8 68 390-457 113-180 (510)
35 1s2m_A Putative ATP-dependent 98.4 5.6E-07 1.9E-11 102.9 9.0 70 388-457 41-112 (400)
36 1q0u_A Bstdead; DEAD protein, 98.4 4.5E-07 1.5E-11 95.8 7.3 69 389-457 25-95 (219)
37 1xti_A Probable ATP-dependent 98.3 1.7E-06 5.8E-11 98.3 12.4 69 389-457 29-99 (391)
38 1fuu_A Yeast initiation factor 98.3 1.3E-06 4.5E-11 99.2 10.9 69 389-457 42-112 (394)
39 3oiy_A Reverse gyrase helicase 98.3 1.2E-06 4.2E-11 101.2 10.4 74 390-464 21-97 (414)
40 3dkp_A Probable ATP-dependent 98.3 7.8E-07 2.7E-11 95.5 7.9 69 389-457 50-121 (245)
41 2j0s_A ATP-dependent RNA helic 98.3 3E-06 1E-10 97.3 12.1 69 389-457 58-128 (410)
42 2fwr_A DNA repair protein RAD2 98.3 1.5E-06 5.3E-11 102.2 9.7 73 389-465 92-165 (472)
43 4a2p_A RIG-I, retinoic acid in 98.3 3.2E-06 1.1E-10 100.6 12.3 76 389-464 6-89 (556)
44 3eiq_A Eukaryotic initiation f 98.3 2E-06 6.7E-11 98.5 10.1 69 389-457 61-131 (414)
45 3pey_A ATP-dependent RNA helic 98.2 3.4E-06 1.2E-10 95.5 11.7 69 389-457 26-98 (395)
46 2i4i_A ATP-dependent RNA helic 98.2 4.7E-06 1.6E-10 95.6 12.8 69 389-457 36-124 (417)
47 3tbk_A RIG-I helicase domain; 98.2 3.1E-06 1.1E-10 100.4 11.1 76 390-465 4-87 (555)
48 3h1t_A Type I site-specific re 98.2 2E-06 7E-11 104.4 9.6 70 389-458 177-260 (590)
49 2zpa_A Uncharacterized protein 98.1 2.4E-06 8.1E-11 105.0 7.7 156 390-638 175-334 (671)
50 2ykg_A Probable ATP-dependent 98.1 1.1E-05 3.9E-10 99.4 13.2 77 388-464 11-95 (696)
51 3fht_A ATP-dependent RNA helic 98.1 1.1E-05 3.6E-10 92.2 11.9 70 388-457 45-118 (412)
52 2va8_A SSO2462, SKI2-type heli 98.1 2.4E-06 8.4E-11 106.2 6.9 68 388-455 28-96 (715)
53 4a2q_A RIG-I, retinoic acid in 98.0 7.8E-06 2.7E-10 103.1 10.1 77 389-465 247-331 (797)
54 2db3_A ATP-dependent RNA helic 98.0 1.8E-05 6.2E-10 92.6 12.6 69 389-457 77-152 (434)
55 1gm5_A RECG; helicase, replica 98.0 2.1E-05 7.2E-10 99.0 13.8 67 390-457 368-440 (780)
56 4gl2_A Interferon-induced heli 98.0 3.2E-06 1.1E-10 104.4 6.0 75 390-464 7-90 (699)
57 2eyq_A TRCF, transcription-rep 98.0 6.3E-05 2.2E-09 98.6 18.0 66 390-456 603-674 (1151)
58 3fmo_B ATP-dependent RNA helic 97.9 2.7E-05 9.2E-10 87.1 11.1 69 389-457 113-185 (300)
59 3i5x_A ATP-dependent RNA helic 97.9 2.4E-05 8.1E-10 94.2 11.0 69 388-456 92-168 (563)
60 2p6r_A Afuhel308 helicase; pro 97.9 1.1E-05 3.9E-10 100.1 8.0 75 389-464 24-101 (702)
61 3sqw_A ATP-dependent RNA helic 97.9 2.8E-05 9.7E-10 94.3 10.9 68 389-456 42-117 (579)
62 3fho_A ATP-dependent RNA helic 97.9 4.7E-06 1.6E-10 99.8 4.0 70 388-457 139-212 (508)
63 2zj8_A DNA helicase, putative 97.9 8.6E-06 2.9E-10 101.5 6.3 76 388-464 21-101 (720)
64 4a2w_A RIG-I, retinoic acid in 97.9 1.3E-05 4.4E-10 103.0 7.8 77 389-465 247-331 (936)
65 4ddu_A Reverse gyrase; topoiso 97.9 2.8E-05 9.6E-10 101.4 10.6 67 390-457 78-144 (1104)
66 3fmp_B ATP-dependent RNA helic 97.9 3.2E-05 1.1E-09 91.2 10.2 68 389-456 113-184 (479)
67 3l9o_A ATP-dependent RNA helic 97.8 6E-05 2.1E-09 98.3 13.3 71 389-460 183-253 (1108)
68 4a4z_A Antiviral helicase SKI2 97.8 5.3E-05 1.8E-09 97.9 11.8 74 390-464 39-114 (997)
69 2xgj_A ATP-dependent RNA helic 97.7 8.7E-05 3E-09 96.0 11.7 67 390-457 86-152 (1010)
70 2l8b_A Protein TRAI, DNA helic 97.6 9.4E-05 3.2E-09 77.1 8.2 64 392-455 36-101 (189)
71 3dmq_A RNA polymerase-associat 97.6 5.8E-05 2E-09 97.3 8.3 72 389-461 152-227 (968)
72 1oyw_A RECQ helicase, ATP-depe 97.6 0.00014 4.9E-09 87.4 11.0 72 389-464 24-95 (523)
73 1gku_B Reverse gyrase, TOP-RG; 97.6 0.00011 3.7E-09 95.7 10.0 65 391-457 58-122 (1054)
74 4f92_B U5 small nuclear ribonu 97.6 0.00019 6.4E-09 97.4 12.2 69 388-456 924-994 (1724)
75 1z63_A Helicase of the SNF2/RA 97.6 0.0001 3.5E-09 87.3 8.3 141 389-587 36-189 (500)
76 2v1x_A ATP-dependent DNA helic 97.5 0.00013 4.6E-09 89.1 9.1 73 389-465 43-115 (591)
77 3crv_A XPD/RAD3 related DNA he 97.3 0.00021 7.2E-09 86.4 7.6 73 390-466 3-83 (551)
78 2b8t_A Thymidine kinase; deoxy 97.3 5.8E-05 2E-09 81.4 1.9 38 405-443 12-49 (223)
79 2vl7_A XPD; helicase, unknown 97.3 0.00026 8.7E-09 85.6 7.1 74 390-467 7-84 (540)
80 1z3i_X Similar to RAD54-like; 97.2 0.0012 4.1E-08 81.4 12.2 66 390-456 55-135 (644)
81 1xx6_A Thymidine kinase; NESG, 97.2 0.00023 7.7E-09 74.9 4.9 37 406-443 9-45 (191)
82 2z83_A Helicase/nucleoside tri 97.2 0.00028 9.5E-09 83.5 5.6 52 404-456 20-72 (459)
83 3llm_A ATP-dependent RNA helic 97.1 0.00066 2.3E-08 72.6 8.0 66 391-456 62-131 (235)
84 2j9r_A Thymidine kinase; TK1, 97.1 0.0005 1.7E-08 73.6 6.7 38 406-444 29-66 (214)
85 2wv9_A Flavivirin protease NS2 97.1 0.00039 1.3E-08 86.3 6.2 55 404-459 240-295 (673)
86 3rc3_A ATP-dependent RNA helic 97.1 0.00074 2.5E-08 83.8 8.5 59 401-464 151-209 (677)
87 4f92_B U5 small nuclear ribonu 97.0 0.0008 2.7E-08 91.3 8.4 76 387-462 76-166 (1724)
88 2jlq_A Serine protease subunit 97.0 0.00083 2.9E-08 79.2 7.6 58 398-456 11-70 (451)
89 4a15_A XPD helicase, ATP-depen 97.0 0.00062 2.1E-08 83.7 6.6 75 392-467 5-88 (620)
90 2v6i_A RNA helicase; membrane, 96.9 0.0012 4.2E-08 77.4 8.2 50 405-455 2-52 (431)
91 2whx_A Serine protease/ntpase/ 96.9 0.00043 1.5E-08 85.1 4.3 58 398-456 179-237 (618)
92 3mwy_W Chromo domain-containin 96.9 0.0011 3.7E-08 83.8 7.5 158 389-587 235-407 (800)
93 2w00_A HSDR, R.ECOR124I; ATP-b 96.9 0.00067 2.3E-08 87.8 5.6 67 390-457 271-353 (1038)
94 2xau_A PRE-mRNA-splicing facto 96.8 0.0025 8.4E-08 80.4 10.2 64 393-456 96-162 (773)
95 1yks_A Genome polyprotein [con 96.8 0.0015 5.1E-08 76.9 7.7 55 403-458 6-61 (440)
96 3kl4_A SRP54, signal recogniti 96.8 0.0037 1.3E-07 73.6 10.9 54 407-461 99-155 (433)
97 3dm5_A SRP54, signal recogniti 96.8 0.0047 1.6E-07 72.9 11.2 54 407-461 102-158 (443)
98 3ec2_A DNA replication protein 96.6 0.0028 9.4E-08 64.6 7.0 49 392-440 16-73 (180)
99 1w4r_A Thymidine kinase; type 96.5 0.0015 5.2E-08 68.9 4.5 38 405-443 20-57 (195)
100 1w36_C RECC, exodeoxyribonucle 96.5 0.0016 5.5E-08 85.2 5.4 78 740-817 656-758 (1122)
101 3o8b_A HCV NS3 protease/helica 96.5 0.0018 6E-08 80.0 5.2 49 404-456 231-279 (666)
102 1vma_A Cell division protein F 96.4 0.011 3.8E-07 66.5 10.8 54 407-461 106-162 (306)
103 3e2i_A Thymidine kinase; Zn-bi 96.4 0.0029 9.9E-08 67.8 5.5 39 405-444 28-66 (219)
104 1g5t_A COB(I)alamin adenosyltr 96.3 0.018 6.2E-07 60.8 11.2 57 405-465 28-88 (196)
105 2w58_A DNAI, primosome compone 96.0 0.01 3.6E-07 61.3 7.1 34 406-440 55-88 (202)
106 2orv_A Thymidine kinase; TP4A 95.9 0.0062 2.1E-07 65.9 5.2 38 405-443 19-56 (234)
107 1tf5_A Preprotein translocase 95.8 0.037 1.3E-06 69.6 12.2 72 390-464 83-158 (844)
108 3bos_A Putative DNA replicatio 95.6 0.027 9.4E-07 58.8 8.7 49 391-440 35-86 (242)
109 2fsf_A Preprotein translocase 95.4 0.035 1.2E-06 69.8 10.0 64 390-456 74-137 (853)
110 2dr3_A UPF0273 protein PH0284; 95.3 0.019 6.4E-07 60.7 6.2 53 405-459 23-75 (247)
111 1nkt_A Preprotein translocase 95.2 0.049 1.7E-06 68.8 10.4 72 390-464 111-186 (922)
112 1jbk_A CLPB protein; beta barr 95.2 0.019 6.6E-07 57.2 5.6 39 393-431 28-69 (195)
113 3te6_A Regulatory protein SIR3 95.2 0.014 4.7E-07 66.1 4.9 28 405-432 45-72 (318)
114 2ipc_A Preprotein translocase 95.1 0.064 2.2E-06 67.8 11.0 64 390-456 79-142 (997)
115 2zts_A Putative uncharacterize 94.9 0.024 8E-07 60.0 5.7 53 405-458 30-82 (251)
116 2orw_A Thymidine kinase; TMTK, 94.9 0.021 7.1E-07 59.3 5.1 38 405-443 3-40 (184)
117 1l8q_A Chromosomal replication 94.8 0.056 1.9E-06 60.2 8.5 35 406-441 38-72 (324)
118 2p65_A Hypothetical protein PF 94.7 0.024 8.3E-07 56.6 4.7 38 394-431 29-69 (187)
119 2chg_A Replication factor C sm 94.6 0.032 1.1E-06 57.0 5.6 39 393-431 23-64 (226)
120 2kjq_A DNAA-related protein; s 94.5 0.036 1.2E-06 55.5 5.4 41 390-431 22-62 (149)
121 2w0m_A SSO2452; RECA, SSPF, un 94.4 0.047 1.6E-06 56.8 6.3 51 405-457 23-73 (235)
122 3u4q_B ATP-dependent helicase/ 94.3 0.021 7.3E-07 75.0 4.3 76 740-815 585-693 (1166)
123 3h4m_A Proteasome-activating n 94.1 0.039 1.3E-06 60.0 5.2 23 406-428 52-74 (285)
124 2qgz_A Helicase loader, putati 94.1 0.059 2E-06 60.4 6.6 35 406-441 153-188 (308)
125 1njg_A DNA polymerase III subu 94.1 0.049 1.7E-06 56.2 5.6 38 393-430 29-70 (250)
126 2v1u_A Cell division control p 93.9 0.05 1.7E-06 61.1 5.7 41 392-432 24-71 (387)
127 3b9p_A CG5977-PA, isoform A; A 93.9 0.046 1.6E-06 59.9 5.1 23 406-428 55-77 (297)
128 4b4t_K 26S protease regulatory 93.9 0.031 1.1E-06 65.7 4.0 22 408-429 209-230 (428)
129 1tue_A Replication protein E1; 93.7 0.039 1.3E-06 58.8 4.1 23 407-429 60-82 (212)
130 3n70_A Transport activator; si 93.7 0.051 1.8E-06 53.6 4.7 23 405-427 24-46 (145)
131 1ofh_A ATP-dependent HSL prote 93.6 0.048 1.6E-06 59.6 4.7 25 405-429 50-74 (310)
132 2qby_A CDC6 homolog 1, cell di 93.5 0.069 2.3E-06 59.9 5.9 40 393-432 26-72 (386)
133 2qz4_A Paraplegin; AAA+, SPG7, 93.5 0.068 2.3E-06 57.1 5.6 24 406-429 40-63 (262)
134 1c4o_A DNA nucleotide excision 93.5 0.11 3.6E-06 64.5 8.0 64 390-457 8-76 (664)
135 3eie_A Vacuolar protein sortin 93.4 0.07 2.4E-06 59.7 5.7 22 407-428 53-74 (322)
136 3hws_A ATP-dependent CLP prote 93.4 0.059 2E-06 61.2 5.1 25 405-429 51-75 (363)
137 1fnn_A CDC6P, cell division co 93.4 0.058 2E-06 60.9 5.1 25 407-431 46-70 (389)
138 2r2a_A Uncharacterized protein 93.3 0.038 1.3E-06 58.3 3.0 23 407-429 7-29 (199)
139 2qby_B CDC6 homolog 3, cell di 93.3 0.089 3.1E-06 59.4 6.3 27 406-432 46-72 (384)
140 3bh0_A DNAB-like replicative h 93.2 0.073 2.5E-06 59.7 5.5 50 405-456 68-117 (315)
141 1xwi_A SKD1 protein; VPS4B, AA 93.2 0.25 8.5E-06 55.5 9.9 24 406-429 46-69 (322)
142 2r8r_A Sensor protein; KDPD, P 93.2 0.075 2.6E-06 57.3 5.2 32 408-440 9-40 (228)
143 3t15_A Ribulose bisphosphate c 93.0 0.045 1.5E-06 60.7 3.3 23 407-429 38-60 (293)
144 3syl_A Protein CBBX; photosynt 93.0 0.051 1.7E-06 59.7 3.7 26 407-432 69-94 (309)
145 2r62_A Cell division protease 92.9 0.033 1.1E-06 60.1 1.9 23 407-429 46-68 (268)
146 2z4s_A Chromosomal replication 92.8 0.19 6.5E-06 59.1 8.3 36 406-441 131-167 (440)
147 2j37_W Signal recognition part 92.7 0.13 4.6E-06 61.6 7.0 56 407-463 103-161 (504)
148 4fcw_A Chaperone protein CLPB; 92.7 0.08 2.7E-06 58.1 4.7 25 406-430 48-72 (311)
149 3co5_A Putative two-component 92.6 0.048 1.6E-06 53.7 2.5 22 405-426 27-48 (143)
150 1iqp_A RFCS; clamp loader, ext 92.6 0.086 2.9E-06 57.9 4.8 39 392-430 30-71 (327)
151 1j8m_F SRP54, signal recogniti 92.6 0.16 5.4E-06 56.7 7.0 55 407-462 100-157 (297)
152 3u61_B DNA polymerase accessor 92.5 0.092 3.1E-06 58.3 5.0 39 391-429 30-72 (324)
153 3uk6_A RUVB-like 2; hexameric 92.5 0.1 3.5E-06 58.8 5.4 24 407-430 72-95 (368)
154 4b4t_M 26S protease regulatory 92.4 0.062 2.1E-06 63.2 3.5 22 408-429 218-239 (434)
155 1lv7_A FTSH; alpha/beta domain 92.4 0.1 3.4E-06 56.1 4.9 23 407-429 47-69 (257)
156 1sxj_A Activator 1 95 kDa subu 92.4 0.09 3.1E-06 63.0 5.0 24 406-429 78-101 (516)
157 1sxj_C Activator 1 40 kDa subu 92.3 0.12 4E-06 58.2 5.5 38 393-430 31-71 (340)
158 1in4_A RUVB, holliday junction 92.2 0.1 3.5E-06 58.8 4.9 24 406-429 52-75 (334)
159 3hr8_A Protein RECA; alpha and 92.2 0.079 2.7E-06 60.8 4.0 49 405-454 61-109 (356)
160 1cr0_A DNA primase/helicase; R 92.2 0.14 4.7E-06 56.4 5.8 50 405-455 35-84 (296)
161 3cf0_A Transitional endoplasmi 92.2 0.1 3.6E-06 57.8 4.8 24 406-429 50-73 (301)
162 3cpe_A Terminase, DNA packagin 92.1 0.32 1.1E-05 59.2 9.5 67 390-456 163-230 (592)
163 3kb2_A SPBC2 prophage-derived 92.1 0.082 2.8E-06 52.5 3.5 23 407-429 3-25 (173)
164 4b4t_L 26S protease subunit RP 92.1 0.072 2.5E-06 62.8 3.5 22 408-429 218-239 (437)
165 2px0_A Flagellar biosynthesis 92.1 0.13 4.3E-06 57.5 5.3 37 405-441 105-141 (296)
166 2r44_A Uncharacterized protein 92.0 0.084 2.9E-06 58.9 3.9 34 396-429 36-70 (331)
167 4b4t_J 26S protease regulatory 92.0 0.074 2.5E-06 62.0 3.5 22 408-429 185-206 (405)
168 1nlf_A Regulatory protein REPA 92.0 0.15 5.1E-06 55.7 5.8 50 405-456 30-89 (279)
169 2bjv_A PSP operon transcriptio 92.0 0.099 3.4E-06 56.4 4.3 25 405-429 29-53 (265)
170 2z0h_A DTMP kinase, thymidylat 92.0 0.17 6E-06 51.4 5.9 31 407-438 2-32 (197)
171 3pfi_A Holliday junction ATP-d 91.9 0.1 3.4E-06 58.3 4.4 23 406-428 56-78 (338)
172 1xjc_A MOBB protein homolog; s 91.9 0.16 5.3E-06 52.4 5.3 38 406-444 5-42 (169)
173 2r6a_A DNAB helicase, replicat 91.8 0.15 5E-06 60.2 5.7 50 405-455 203-252 (454)
174 1um8_A ATP-dependent CLP prote 91.7 0.13 4.5E-06 58.6 5.1 25 405-429 72-96 (376)
175 2xxa_A Signal recognition part 91.7 0.2 6.7E-06 59.0 6.6 54 407-461 102-159 (433)
176 1sxj_D Activator 1 41 kDa subu 91.7 0.1 3.4E-06 58.3 4.0 37 394-430 44-83 (353)
177 3d8b_A Fidgetin-like protein 1 91.6 0.13 4.6E-06 58.5 5.0 23 406-428 118-140 (357)
178 1d2n_A N-ethylmaleimide-sensit 91.6 0.094 3.2E-06 56.9 3.6 23 406-428 65-87 (272)
179 2chq_A Replication factor C sm 91.6 0.14 4.8E-06 56.0 5.0 39 392-430 22-63 (319)
180 2d7d_A Uvrabc system protein B 91.6 0.37 1.3E-05 59.6 9.3 64 390-457 12-80 (661)
181 1sxj_E Activator 1 40 kDa subu 91.5 0.1 3.5E-06 58.4 3.9 48 392-439 19-70 (354)
182 1p9r_A General secretion pathw 91.5 0.16 5.4E-06 59.5 5.6 49 391-440 151-201 (418)
183 3vfd_A Spastin; ATPase, microt 91.4 0.15 5.1E-06 58.6 5.2 37 392-428 120-171 (389)
184 4b4t_I 26S protease regulatory 91.4 0.099 3.4E-06 61.4 3.6 22 408-429 219-240 (437)
185 1hqc_A RUVB; extended AAA-ATPa 91.4 0.11 3.9E-06 57.2 4.0 24 406-429 39-62 (324)
186 2o0j_A Terminase, DNA packagin 91.3 0.41 1.4E-05 55.5 8.7 67 390-456 163-230 (385)
187 1n0w_A DNA repair protein RAD5 91.3 0.12 4E-06 54.5 3.8 39 405-443 24-67 (243)
188 1qhx_A CPT, protein (chloramph 91.3 0.1 3.4E-06 52.5 3.1 24 406-429 4-27 (178)
189 2v3c_C SRP54, signal recogniti 91.2 0.12 4.1E-06 60.8 4.1 34 407-441 101-134 (432)
190 3b9q_A Chloroplast SRP recepto 91.1 0.41 1.4E-05 53.5 8.2 55 406-461 101-158 (302)
191 4a1f_A DNAB helicase, replicat 91.1 0.18 6.1E-06 57.5 5.3 50 405-456 46-95 (338)
192 1zu4_A FTSY; GTPase, signal re 91.1 0.18 6.1E-06 57.0 5.2 35 406-441 106-140 (320)
193 2zr9_A Protein RECA, recombina 91.0 0.18 6E-06 57.7 5.2 39 405-444 61-99 (349)
194 1jr3_A DNA polymerase III subu 91.0 0.19 6.7E-06 56.3 5.5 38 393-430 22-63 (373)
195 1u94_A RECA protein, recombina 91.0 0.19 6.4E-06 57.6 5.4 38 405-443 63-100 (356)
196 2ehv_A Hypothetical protein PH 91.0 0.32 1.1E-05 51.2 6.9 36 405-441 30-66 (251)
197 2q6t_A DNAB replication FORK h 91.0 0.2 6.8E-06 58.8 5.7 50 405-455 200-249 (444)
198 1kht_A Adenylate kinase; phosp 90.9 0.13 4.3E-06 52.0 3.5 25 406-430 4-28 (192)
199 1nks_A Adenylate kinase; therm 90.9 0.12 4.1E-06 52.2 3.3 33 407-440 3-35 (194)
200 2cvh_A DNA repair and recombin 90.9 0.18 6.2E-06 52.1 4.7 34 405-442 20-53 (220)
201 1w5s_A Origin recognition comp 90.8 0.14 4.7E-06 58.3 4.1 26 406-431 51-78 (412)
202 2fna_A Conserved hypothetical 90.8 0.19 6.7E-06 55.5 5.2 36 393-429 19-54 (357)
203 4b4t_H 26S protease regulatory 90.7 0.1 3.5E-06 61.8 3.0 22 408-429 246-267 (467)
204 3pvs_A Replication-associated 90.7 0.16 5.5E-06 59.9 4.6 24 406-429 51-74 (447)
205 3lw7_A Adenylate kinase relate 90.7 0.12 4E-06 51.0 3.0 20 406-425 2-21 (179)
206 1g8p_A Magnesium-chelatase 38 90.7 0.13 4.3E-06 57.4 3.6 25 405-429 45-69 (350)
207 2zan_A Vacuolar protein sortin 90.6 0.18 6E-06 59.4 4.8 24 406-429 168-191 (444)
208 2c9o_A RUVB-like 1; hexameric 90.6 0.21 7.3E-06 58.7 5.6 23 407-429 65-87 (456)
209 3trf_A Shikimate kinase, SK; a 90.6 0.15 5.1E-06 51.6 3.7 25 405-429 5-29 (185)
210 1q57_A DNA primase/helicase; d 90.6 0.15 5.3E-06 60.6 4.3 50 405-455 242-291 (503)
211 1ly1_A Polynucleotide kinase; 90.5 0.13 4.6E-06 51.3 3.2 21 407-427 4-24 (181)
212 2qp9_X Vacuolar protein sortin 90.5 0.13 4.6E-06 58.5 3.5 23 407-429 86-108 (355)
213 3io5_A Recombination and repai 90.4 0.13 4.5E-06 58.2 3.3 41 405-445 28-69 (333)
214 2yvu_A Probable adenylyl-sulfa 90.4 0.25 8.5E-06 50.3 5.2 34 406-440 14-47 (186)
215 1sxj_B Activator 1 37 kDa subu 90.4 0.22 7.4E-06 54.6 5.1 38 393-430 27-67 (323)
216 1gvn_B Zeta; postsegregational 90.3 0.22 7.4E-06 55.2 5.0 23 407-429 35-57 (287)
217 2x8a_A Nuclear valosin-contain 90.3 0.12 4.3E-06 56.7 3.0 20 408-427 47-66 (274)
218 2rhm_A Putative kinase; P-loop 90.3 0.15 5E-06 51.8 3.3 24 406-429 6-29 (193)
219 2og2_A Putative signal recogni 90.3 0.52 1.8E-05 54.1 8.2 54 407-461 159-215 (359)
220 1ixz_A ATP-dependent metallopr 90.2 0.13 4.4E-06 55.1 3.0 21 408-428 52-72 (254)
221 2z43_A DNA repair and recombin 90.2 0.15 5E-06 57.3 3.6 53 405-457 107-165 (324)
222 3e70_C DPA, signal recognition 90.2 0.39 1.3E-05 54.4 7.1 56 406-462 130-188 (328)
223 1yrb_A ATP(GTP)binding protein 90.1 0.2 6.9E-06 53.5 4.5 35 405-441 14-48 (262)
224 3iij_A Coilin-interacting nucl 90.0 0.18 6.2E-06 50.9 3.7 25 405-429 11-35 (180)
225 2plr_A DTMP kinase, probable t 90.0 0.17 5.8E-06 52.0 3.5 25 406-430 5-29 (213)
226 1xp8_A RECA protein, recombina 90.0 0.24 8.4E-06 56.9 5.2 39 405-444 74-112 (366)
227 1kag_A SKI, shikimate kinase I 89.9 0.17 5.7E-06 50.6 3.3 23 406-428 5-27 (173)
228 2iyv_A Shikimate kinase, SK; t 89.7 0.2 6.7E-06 50.8 3.7 24 406-429 3-26 (184)
229 2yhs_A FTSY, cell division pro 89.7 0.56 1.9E-05 56.0 8.1 45 407-452 295-342 (503)
230 1tev_A UMP-CMP kinase; ploop, 89.7 0.19 6.4E-06 50.8 3.5 23 407-429 5-27 (196)
231 2vhj_A Ntpase P4, P4; non- hyd 89.5 0.21 7E-06 56.7 4.0 24 405-428 123-146 (331)
232 3a4m_A L-seryl-tRNA(SEC) kinas 89.4 0.31 1.1E-05 52.9 5.2 35 406-441 5-39 (260)
233 3cm0_A Adenylate kinase; ATP-b 89.4 0.2 6.9E-06 50.6 3.5 23 407-429 6-28 (186)
234 3vaa_A Shikimate kinase, SK; s 89.4 0.21 7.1E-06 51.7 3.7 25 405-429 25-49 (199)
235 3t61_A Gluconokinase; PSI-biol 89.3 0.2 7E-06 51.6 3.6 24 406-429 19-42 (202)
236 1via_A Shikimate kinase; struc 89.2 0.22 7.7E-06 50.1 3.7 23 407-429 6-28 (175)
237 2cdn_A Adenylate kinase; phosp 89.2 0.21 7.2E-06 51.5 3.5 23 407-429 22-44 (201)
238 1np6_A Molybdopterin-guanine d 89.2 0.37 1.3E-05 49.6 5.3 36 405-441 6-41 (174)
239 1a5t_A Delta prime, HOLB; zinc 89.2 0.23 7.9E-06 55.9 4.1 25 407-431 26-50 (334)
240 3p32_A Probable GTPase RV1496/ 89.2 0.27 9.1E-06 56.0 4.7 35 407-442 81-115 (355)
241 3b85_A Phosphate starvation-in 89.1 0.36 1.2E-05 51.0 5.3 39 390-428 7-45 (208)
242 3bgw_A DNAB-like replicative h 89.1 0.31 1.1E-05 57.4 5.3 50 405-456 197-246 (444)
243 1iy2_A ATP-dependent metallopr 89.1 0.18 6.1E-06 55.0 3.0 22 408-429 76-97 (278)
244 3pxg_A Negative regulator of g 89.0 0.31 1E-05 57.7 5.2 39 393-431 186-227 (468)
245 1v5w_A DMC1, meiotic recombina 89.0 0.22 7.6E-06 56.5 3.9 54 405-458 122-181 (343)
246 1e6c_A Shikimate kinase; phosp 89.0 0.24 8.3E-06 49.3 3.7 24 406-429 3-26 (173)
247 2c95_A Adenylate kinase 1; tra 89.0 0.22 7.5E-06 50.6 3.5 25 405-429 9-33 (196)
248 1qf9_A UMP/CMP kinase, protein 89.0 0.21 7.3E-06 50.3 3.3 23 407-429 8-30 (194)
249 3fb4_A Adenylate kinase; psych 89.0 0.22 7.6E-06 51.7 3.6 22 408-429 3-24 (216)
250 3ug7_A Arsenical pump-driving 88.9 0.33 1.1E-05 55.3 5.2 38 405-443 26-63 (349)
251 2pbr_A DTMP kinase, thymidylat 88.8 0.49 1.7E-05 47.7 6.0 32 407-439 2-33 (195)
252 3nbx_X ATPase RAVA; AAA+ ATPas 88.8 0.22 7.4E-06 59.7 3.7 29 401-429 37-65 (500)
253 2jaq_A Deoxyguanosine kinase; 88.8 0.23 8E-06 50.6 3.5 23 407-429 2-24 (205)
254 2ze6_A Isopentenyl transferase 88.8 0.22 7.6E-06 53.9 3.5 23 407-429 3-25 (253)
255 1u0j_A DNA replication protein 88.8 0.34 1.2E-05 53.5 4.9 39 390-428 83-127 (267)
256 2ffh_A Protein (FFH); SRP54, s 88.8 0.64 2.2E-05 54.6 7.6 56 407-463 100-158 (425)
257 2bwj_A Adenylate kinase 5; pho 88.7 0.22 7.6E-06 50.7 3.3 25 405-429 12-36 (199)
258 1zuh_A Shikimate kinase; alpha 88.7 0.26 9E-06 49.1 3.7 24 406-429 8-31 (168)
259 1nn5_A Similar to deoxythymidy 88.6 0.59 2E-05 48.1 6.5 28 406-433 10-37 (215)
260 2wwf_A Thymidilate kinase, put 88.6 0.23 7.9E-06 51.2 3.3 27 406-432 11-37 (212)
261 3jvv_A Twitching mobility prot 88.5 0.33 1.1E-05 55.6 4.9 35 405-439 123-157 (356)
262 4eun_A Thermoresistant glucoki 88.5 0.27 9.3E-06 50.8 3.8 25 405-429 29-53 (200)
263 1zp6_A Hypothetical protein AT 88.5 0.2 6.9E-06 50.8 2.8 23 405-427 9-31 (191)
264 3zq6_A Putative arsenical pump 88.3 0.36 1.2E-05 54.2 5.0 36 406-442 15-50 (324)
265 3dl0_A Adenylate kinase; phosp 88.3 0.21 7.2E-06 52.0 2.9 21 408-428 3-23 (216)
266 1ls1_A Signal recognition part 88.2 0.92 3.1E-05 50.4 8.1 56 406-462 99-157 (295)
267 1aky_A Adenylate kinase; ATP:A 88.1 0.27 9.4E-06 51.4 3.5 23 407-429 6-28 (220)
268 1knq_A Gluconate kinase; ALFA/ 88.0 0.29 9.8E-06 49.1 3.5 24 406-429 9-32 (175)
269 2vli_A Antibiotic resistance p 88.0 0.19 6.4E-06 50.6 2.1 23 406-428 6-28 (183)
270 2qen_A Walker-type ATPase; unk 88.0 0.43 1.5E-05 52.7 5.2 36 393-428 18-54 (350)
271 2ewv_A Twitching motility prot 87.9 0.37 1.3E-05 55.4 4.8 37 405-441 136-172 (372)
272 3umf_A Adenylate kinase; rossm 87.9 0.25 8.6E-06 52.7 3.1 25 405-429 29-53 (217)
273 1zak_A Adenylate kinase; ATP:A 87.8 0.28 9.4E-06 51.5 3.4 24 406-429 6-29 (222)
274 2pt5_A Shikimate kinase, SK; a 87.4 0.34 1.1E-05 48.1 3.5 23 407-429 2-24 (168)
275 3sr0_A Adenylate kinase; phosp 87.3 0.32 1.1E-05 51.3 3.6 22 408-429 3-24 (206)
276 3hu3_A Transitional endoplasmi 87.2 0.28 9.6E-06 58.5 3.4 22 407-428 240-261 (489)
277 3tlx_A Adenylate kinase 2; str 87.2 0.32 1.1E-05 52.2 3.5 23 407-429 31-53 (243)
278 3cmu_A Protein RECA, recombina 87.2 0.98 3.4E-05 62.0 8.8 40 405-445 1427-1466(2050)
279 1ukz_A Uridylate kinase; trans 87.2 0.28 9.5E-06 50.5 2.9 22 407-428 17-38 (203)
280 4edh_A DTMP kinase, thymidylat 87.2 0.67 2.3E-05 49.1 5.9 39 405-444 6-45 (213)
281 1y63_A LMAJ004144AAA protein; 87.2 0.34 1.2E-05 49.4 3.5 23 406-428 11-33 (184)
282 2qor_A Guanylate kinase; phosp 87.1 0.29 1E-05 50.7 3.1 25 405-429 12-36 (204)
283 1rj9_A FTSY, signal recognitio 87.1 0.46 1.6E-05 53.2 4.8 36 406-442 103-138 (304)
284 2xb4_A Adenylate kinase; ATP-b 87.1 0.34 1.2E-05 51.2 3.5 23 407-429 2-24 (223)
285 3bfv_A CAPA1, CAPB2, membrane 87.1 0.91 3.1E-05 49.7 7.1 34 406-440 83-117 (271)
286 2bdt_A BH3686; alpha-beta prot 87.1 0.3 1E-05 49.7 3.0 21 407-427 4-24 (189)
287 2i1q_A DNA repair and recombin 87.0 0.26 8.9E-06 55.0 2.8 53 405-457 98-166 (322)
288 1ak2_A Adenylate kinase isoenz 87.0 0.34 1.2E-05 51.4 3.5 24 406-429 17-40 (233)
289 1g41_A Heat shock protein HSLU 86.8 0.5 1.7E-05 55.7 5.1 24 406-429 51-74 (444)
290 1zd8_A GTP:AMP phosphotransfer 86.8 0.27 9.3E-06 51.8 2.6 24 406-429 8-31 (227)
291 1kgd_A CASK, peripheral plasma 86.8 0.32 1.1E-05 49.6 3.0 24 405-428 5-28 (180)
292 1ye8_A Protein THEP1, hypothet 86.8 0.37 1.3E-05 49.5 3.5 23 407-429 2-24 (178)
293 1ojl_A Transcriptional regulat 86.8 0.48 1.6E-05 52.8 4.7 24 405-428 25-48 (304)
294 3uie_A Adenylyl-sulfate kinase 86.7 0.37 1.3E-05 49.7 3.6 40 390-430 11-50 (200)
295 2gno_A DNA polymerase III, gam 86.7 0.54 1.8E-05 52.6 5.1 23 406-428 19-41 (305)
296 3tau_A Guanylate kinase, GMP k 86.6 0.29 9.8E-06 51.2 2.6 24 405-428 8-31 (208)
297 2oze_A ORF delta'; para, walke 86.5 0.93 3.2E-05 49.6 6.8 34 406-440 36-71 (298)
298 2eyu_A Twitching motility prot 86.4 0.55 1.9E-05 51.3 4.9 37 405-441 25-61 (261)
299 3bs4_A Uncharacterized protein 86.4 0.54 1.8E-05 51.6 4.7 54 405-460 21-74 (260)
300 2v54_A DTMP kinase, thymidylat 86.4 0.28 9.4E-06 50.3 2.3 24 406-429 5-28 (204)
301 1e4v_A Adenylate kinase; trans 86.4 0.37 1.3E-05 50.3 3.3 22 408-429 3-24 (214)
302 3be4_A Adenylate kinase; malar 86.3 0.37 1.3E-05 50.5 3.3 23 407-429 7-29 (217)
303 2bbw_A Adenylate kinase 4, AK4 86.2 0.41 1.4E-05 51.1 3.7 25 405-429 27-51 (246)
304 4ag6_A VIRB4 ATPase, type IV s 86.2 0.55 1.9E-05 53.8 5.0 59 404-467 34-92 (392)
305 3pxi_A Negative regulator of g 86.1 0.54 1.8E-05 58.9 5.2 38 393-430 186-226 (758)
306 1ihu_A Arsenical pump-driving 86.1 0.59 2E-05 56.7 5.4 38 405-443 8-45 (589)
307 3tr0_A Guanylate kinase, GMP k 85.9 0.38 1.3E-05 49.3 3.1 24 405-428 7-30 (205)
308 1rz3_A Hypothetical protein rb 85.8 0.67 2.3E-05 48.0 4.9 34 406-440 23-56 (201)
309 1c9k_A COBU, adenosylcobinamid 85.8 0.26 8.8E-06 51.3 1.7 46 407-457 1-46 (180)
310 3kjh_A CO dehydrogenase/acetyl 85.7 0.4 1.4E-05 50.4 3.3 30 410-440 5-34 (254)
311 3iqw_A Tail-anchored protein t 85.6 0.53 1.8E-05 53.4 4.4 38 405-443 16-53 (334)
312 1byi_A Dethiobiotin synthase; 85.6 0.73 2.5E-05 48.0 5.2 34 407-441 4-37 (224)
313 1m7g_A Adenylylsulfate kinase; 85.6 0.57 2E-05 48.8 4.3 39 391-430 12-50 (211)
314 3v9p_A DTMP kinase, thymidylat 85.6 0.82 2.8E-05 49.1 5.6 28 405-432 25-52 (227)
315 1cke_A CK, MSSA, protein (cyti 85.5 0.46 1.6E-05 49.6 3.5 24 406-429 6-29 (227)
316 4gp7_A Metallophosphoesterase; 85.4 0.4 1.4E-05 48.5 3.0 20 405-424 9-28 (171)
317 2j41_A Guanylate kinase; GMP, 85.4 0.35 1.2E-05 49.5 2.6 24 405-428 6-29 (207)
318 2ce7_A Cell division protein F 85.4 0.42 1.4E-05 56.9 3.5 23 407-429 51-73 (476)
319 2wsm_A Hydrogenase expression/ 85.3 0.65 2.2E-05 48.1 4.6 35 405-441 30-64 (221)
320 1gtv_A TMK, thymidylate kinase 85.3 0.26 9E-06 50.8 1.6 24 407-430 2-25 (214)
321 2woo_A ATPase GET3; tail-ancho 85.3 0.65 2.2E-05 52.3 4.8 36 405-441 19-54 (329)
322 3cio_A ETK, tyrosine-protein k 85.2 1.2 3.9E-05 49.6 6.8 35 406-441 105-140 (299)
323 2p5t_B PEZT; postsegregational 85.2 0.31 1E-05 52.6 2.1 23 407-429 34-56 (253)
324 2pez_A Bifunctional 3'-phospho 85.2 0.79 2.7E-05 46.2 5.0 26 406-431 6-31 (179)
325 1hyq_A MIND, cell division inh 85.0 0.79 2.7E-05 49.0 5.2 34 407-441 5-38 (263)
326 2oap_1 GSPE-2, type II secreti 84.9 0.65 2.2E-05 55.7 4.9 39 391-429 245-284 (511)
327 4dzz_A Plasmid partitioning pr 84.9 0.6 2.1E-05 47.7 4.0 34 408-442 5-38 (206)
328 2ph1_A Nucleotide-binding prot 84.9 0.97 3.3E-05 48.7 5.9 35 406-441 20-54 (262)
329 3q9l_A Septum site-determining 84.8 0.7 2.4E-05 49.1 4.6 34 407-441 5-38 (260)
330 3lv8_A DTMP kinase, thymidylat 84.8 1 3.5E-05 48.6 5.9 40 405-444 27-67 (236)
331 1e9r_A Conjugal transfer prote 84.7 0.7 2.4E-05 53.6 4.9 43 405-448 53-95 (437)
332 3m6a_A ATP-dependent protease 84.6 0.49 1.7E-05 57.1 3.7 25 405-429 108-132 (543)
333 3a00_A Guanylate kinase, GMP k 84.5 0.48 1.6E-05 48.4 3.1 24 406-429 2-25 (186)
334 3end_A Light-independent proto 84.5 0.77 2.6E-05 50.6 5.0 33 407-440 43-75 (307)
335 1r6b_X CLPA protein; AAA+, N-t 84.5 0.89 3E-05 56.8 6.1 39 393-431 192-233 (758)
336 3fwy_A Light-independent proto 84.4 0.75 2.6E-05 51.7 4.8 36 405-441 48-83 (314)
337 3c8u_A Fructokinase; YP_612366 84.3 0.52 1.8E-05 49.0 3.3 25 406-430 23-47 (208)
338 1ex7_A Guanylate kinase; subst 84.3 0.6 2E-05 48.6 3.7 22 406-427 2-23 (186)
339 1g3q_A MIND ATPase, cell divis 84.2 0.78 2.7E-05 48.1 4.6 34 407-441 5-38 (237)
340 4eaq_A DTMP kinase, thymidylat 84.2 0.72 2.4E-05 49.2 4.4 33 406-440 27-59 (229)
341 1jjv_A Dephospho-COA kinase; P 84.1 0.5 1.7E-05 48.7 3.0 21 407-427 4-24 (206)
342 4tmk_A Protein (thymidylate ki 84.1 1.3 4.5E-05 46.9 6.3 43 405-447 3-46 (213)
343 2qm8_A GTPase/ATPase; G protei 83.9 0.88 3E-05 51.5 5.2 37 405-442 55-91 (337)
344 2afh_E Nitrogenase iron protei 83.9 0.86 2.9E-05 49.8 4.9 32 408-440 5-36 (289)
345 1cp2_A CP2, nitrogenase iron p 83.8 0.77 2.6E-05 49.3 4.4 31 409-440 5-35 (269)
346 4a74_A DNA repair and recombin 83.8 0.49 1.7E-05 49.1 2.8 26 405-430 25-50 (231)
347 2www_A Methylmalonic aciduria 83.7 0.94 3.2E-05 51.5 5.3 36 406-442 75-110 (349)
348 3io3_A DEHA2D07832P; chaperone 83.5 0.8 2.7E-05 52.2 4.6 38 405-443 18-57 (348)
349 2dhr_A FTSH; AAA+ protein, hex 83.4 0.5 1.7E-05 56.6 3.0 21 408-428 67-87 (499)
350 2woj_A ATPase GET3; tail-ancho 83.4 0.77 2.6E-05 52.4 4.4 38 405-443 18-57 (354)
351 3ake_A Cytidylate kinase; CMP 83.3 0.72 2.5E-05 47.2 3.8 24 406-429 3-26 (208)
352 1tf7_A KAIC; homohexamer, hexa 83.2 1 3.5E-05 53.9 5.6 49 405-455 281-329 (525)
353 2hf9_A Probable hydrogenase ni 83.2 1.9 6.5E-05 44.7 7.1 67 393-464 23-94 (226)
354 3ea0_A ATPase, para family; al 83.0 0.82 2.8E-05 48.1 4.2 35 407-441 7-41 (245)
355 1qvr_A CLPB protein; coiled co 82.9 1.2 4.2E-05 56.5 6.5 38 394-431 177-217 (854)
356 3cf2_A TER ATPase, transitiona 82.9 0.4 1.4E-05 60.5 2.0 21 408-428 241-261 (806)
357 3cwq_A Para family chromosome 82.9 0.93 3.2E-05 47.4 4.5 32 407-440 3-34 (209)
358 3k1j_A LON protease, ATP-depen 82.8 0.76 2.6E-05 56.1 4.4 34 396-429 50-84 (604)
359 1uj2_A Uridine-cytidine kinase 82.4 0.63 2.1E-05 50.0 3.0 23 407-429 24-46 (252)
360 3nwj_A ATSK2; P loop, shikimat 82.4 0.85 2.9E-05 49.6 4.1 25 405-429 48-72 (250)
361 3lda_A DNA repair protein RAD5 82.1 0.68 2.3E-05 53.8 3.4 38 405-442 178-220 (400)
362 1lvg_A Guanylate kinase, GMP k 82.0 0.83 2.9E-05 47.3 3.7 25 405-429 4-28 (198)
363 2p67_A LAO/AO transport system 81.8 1.1 3.8E-05 50.6 4.9 35 406-441 57-91 (341)
364 2if2_A Dephospho-COA kinase; a 81.4 0.73 2.5E-05 47.3 3.0 21 407-427 3-23 (204)
365 2i3b_A HCR-ntpase, human cance 81.2 0.97 3.3E-05 47.0 3.8 25 406-430 2-26 (189)
366 1ltq_A Polynucleotide kinase; 81.2 0.76 2.6E-05 50.3 3.2 21 407-427 4-24 (301)
367 3pxi_A Negative regulator of g 81.2 1.1 3.7E-05 56.2 4.9 24 407-430 523-546 (758)
368 3asz_A Uridine kinase; cytidin 80.7 0.88 3E-05 47.0 3.3 24 406-429 7-30 (211)
369 2qt1_A Nicotinamide riboside k 80.5 0.78 2.7E-05 47.4 2.8 22 406-427 22-43 (207)
370 3igf_A ALL4481 protein; two-do 80.3 0.94 3.2E-05 52.2 3.7 36 406-442 3-38 (374)
371 3f9v_A Minichromosome maintena 80.3 0.6 2.1E-05 57.0 2.2 20 407-426 329-348 (595)
372 3la6_A Tyrosine-protein kinase 80.2 1.9 6.5E-05 47.6 6.0 33 407-440 95-127 (286)
373 3ez2_A Plasmid partition prote 80.2 1.3 4.5E-05 50.8 4.9 51 391-441 84-150 (398)
374 1f2t_A RAD50 ABC-ATPase; DNA d 80.2 0.95 3.3E-05 45.0 3.2 25 405-429 23-47 (149)
375 3kta_A Chromosome segregation 80.2 0.86 2.9E-05 45.9 3.0 25 405-429 26-50 (182)
376 1svm_A Large T antigen; AAA+ f 80.0 1 3.5E-05 52.0 3.9 24 405-428 169-192 (377)
377 1wcv_1 SOJ, segregation protei 79.9 1 3.4E-05 48.4 3.5 34 407-441 9-42 (257)
378 3r20_A Cytidylate kinase; stru 79.8 1 3.5E-05 48.6 3.5 24 406-429 10-33 (233)
379 3fkq_A NTRC-like two-domain pr 79.7 1.3 4.3E-05 50.7 4.5 35 407-442 146-180 (373)
380 3tqc_A Pantothenate kinase; bi 79.6 1.6 5.3E-05 49.4 5.1 34 407-441 94-129 (321)
381 3ice_A Transcription terminati 79.5 2.3 7.9E-05 49.4 6.5 62 393-454 159-226 (422)
382 3k9g_A PF-32 protein; ssgcid, 79.4 0.97 3.3E-05 48.6 3.2 32 407-440 30-61 (267)
383 2grj_A Dephospho-COA kinase; T 79.3 1.1 3.8E-05 46.6 3.6 22 407-428 14-35 (192)
384 3ney_A 55 kDa erythrocyte memb 79.2 1.2 3.9E-05 47.0 3.6 24 405-428 19-42 (197)
385 1tf7_A KAIC; homohexamer, hexa 79.1 2.3 7.9E-05 50.9 6.7 38 405-442 39-77 (525)
386 3pg5_A Uncharacterized protein 79.0 0.91 3.1E-05 51.7 3.0 33 407-440 4-36 (361)
387 2xj4_A MIPZ; replication, cell 78.9 1.3 4.4E-05 48.5 4.1 33 407-440 7-39 (286)
388 3cf2_A TER ATPase, transitiona 78.9 0.69 2.3E-05 58.4 2.1 21 408-428 514-534 (806)
389 1r6b_X CLPA protein; AAA+, N-t 78.9 1.1 3.8E-05 55.9 4.0 23 407-429 490-512 (758)
390 1uf9_A TT1252 protein; P-loop, 78.8 0.99 3.4E-05 45.9 2.9 21 407-427 10-30 (203)
391 1z6t_A APAF-1, apoptotic prote 78.7 1.4 4.9E-05 52.8 4.8 36 393-428 130-170 (591)
392 3crm_A TRNA delta(2)-isopenten 78.3 0.94 3.2E-05 51.2 2.8 24 406-429 6-29 (323)
393 3cmw_A Protein RECA, recombina 78.3 1.5 5E-05 59.6 5.1 48 405-453 34-81 (1706)
394 3lnc_A Guanylate kinase, GMP k 78.2 0.84 2.9E-05 48.1 2.2 22 405-426 27-48 (231)
395 3l0o_A Transcription terminati 77.9 2.6 9E-05 49.0 6.3 38 396-433 163-203 (427)
396 1pzn_A RAD51, DNA repair and r 77.6 1.3 4.4E-05 50.4 3.7 25 405-429 131-155 (349)
397 1vht_A Dephospho-COA kinase; s 77.3 1.2 4.2E-05 46.2 3.2 20 407-426 6-25 (218)
398 2v9p_A Replication protein E1; 77.3 1.5 5.3E-05 49.1 4.1 31 405-439 126-156 (305)
399 1znw_A Guanylate kinase, GMP k 77.3 1.2 4.2E-05 46.1 3.2 26 404-429 19-44 (207)
400 3cmw_A Protein RECA, recombina 77.3 1.3 4.3E-05 60.2 4.0 44 405-449 383-426 (1706)
401 2jeo_A Uridine-cytidine kinase 77.0 1.4 4.8E-05 47.0 3.6 23 407-429 27-49 (245)
402 3ld9_A DTMP kinase, thymidylat 76.8 2.5 8.6E-05 45.2 5.5 41 406-447 22-65 (223)
403 3qks_A DNA double-strand break 76.7 1.3 4.5E-05 46.2 3.2 26 405-430 23-48 (203)
404 1z6g_A Guanylate kinase; struc 76.5 1.4 4.8E-05 46.4 3.4 31 405-439 23-53 (218)
405 4e22_A Cytidylate kinase; P-lo 76.2 1.4 4.7E-05 47.5 3.3 25 405-429 27-51 (252)
406 1qvr_A CLPB protein; coiled co 75.9 1.4 4.9E-05 55.8 3.8 24 407-430 590-613 (854)
407 3hjn_A DTMP kinase, thymidylat 75.5 3.6 0.00012 42.8 6.1 33 408-441 3-35 (197)
408 3zvl_A Bifunctional polynucleo 75.4 0.93 3.2E-05 52.8 1.8 23 405-427 258-280 (416)
409 2qmh_A HPR kinase/phosphorylas 75.3 1.4 4.8E-05 46.7 2.9 24 405-428 34-57 (205)
410 1s96_A Guanylate kinase, GMP k 75.2 1.5 5.1E-05 46.6 3.1 24 405-428 16-39 (219)
411 1q3t_A Cytidylate kinase; nucl 74.9 1.7 5.9E-05 46.0 3.6 24 406-429 17-40 (236)
412 1odf_A YGR205W, hypothetical 3 74.9 1.7 5.7E-05 48.3 3.5 25 407-431 33-57 (290)
413 3d3q_A TRNA delta(2)-isopenten 74.9 1.4 4.9E-05 50.1 3.0 24 406-429 8-31 (340)
414 2f6r_A COA synthase, bifunctio 74.8 1.4 4.6E-05 48.5 2.8 20 407-426 77-96 (281)
415 1nij_A Hypothetical protein YJ 74.2 1.4 4.6E-05 49.4 2.6 34 406-442 5-38 (318)
416 3exa_A TRNA delta(2)-isopenten 73.4 1.3 4.6E-05 49.9 2.3 25 405-429 3-27 (322)
417 1ypw_A Transitional endoplasmi 73.4 1.1 3.9E-05 56.6 1.9 22 406-427 239-260 (806)
418 1ypw_A Transitional endoplasmi 73.3 1.1 3.7E-05 56.7 1.8 24 406-429 512-535 (806)
419 2h92_A Cytidylate kinase; ross 73.2 1.8 6E-05 44.9 3.0 22 407-428 5-26 (219)
420 2obl_A ESCN; ATPase, hydrolase 73.1 2.1 7.2E-05 48.7 3.9 47 396-443 59-108 (347)
421 3aez_A Pantothenate kinase; tr 73.0 1.9 6.6E-05 48.3 3.5 24 406-429 91-114 (312)
422 3gmt_A Adenylate kinase; ssgci 72.9 1.8 6.1E-05 46.7 3.0 22 408-429 11-32 (230)
423 3ez9_A Para; DNA binding, wing 72.5 1.3 4.4E-05 51.0 2.0 49 391-440 87-152 (403)
424 1sq5_A Pantothenate kinase; P- 72.3 1.9 6.7E-05 47.8 3.3 36 406-441 81-117 (308)
425 3a8t_A Adenylate isopentenyltr 72.2 1.3 4.4E-05 50.5 1.8 24 406-429 41-64 (339)
426 2ocp_A DGK, deoxyguanosine kin 72.1 1.6 5.6E-05 46.2 2.5 23 407-429 4-26 (241)
427 2ga8_A Hypothetical 39.9 kDa p 72.0 2.1 7.2E-05 49.1 3.5 22 408-429 27-48 (359)
428 2axn_A 6-phosphofructo-2-kinas 71.7 2 7E-05 51.5 3.5 44 406-455 36-79 (520)
429 3tmk_A Thymidylate kinase; pho 71.7 2.1 7.2E-05 45.5 3.3 26 405-430 5-30 (216)
430 1a7j_A Phosphoribulokinase; tr 71.5 1.5 5E-05 48.6 2.1 25 406-430 6-30 (290)
431 2f1r_A Molybdopterin-guanine d 71.3 1.6 5.6E-05 44.6 2.2 27 406-432 3-29 (171)
432 3foz_A TRNA delta(2)-isopenten 71.3 1.7 6E-05 48.9 2.6 24 406-429 11-34 (316)
433 3cmu_A Protein RECA, recombina 70.9 2.8 9.7E-05 57.7 4.9 41 405-446 383-423 (2050)
434 3eph_A TRNA isopentenyltransfe 70.2 2.1 7.2E-05 49.9 3.0 24 406-429 3-26 (409)
435 1sky_E F1-ATPase, F1-ATP synth 70.1 3.1 0.00011 49.4 4.5 59 398-456 141-204 (473)
436 1ihu_A Arsenical pump-driving 69.6 3.7 0.00013 49.7 5.2 35 405-440 327-361 (589)
437 2gks_A Bifunctional SAT/APS ki 69.5 4.8 0.00016 48.6 6.1 41 407-453 374-414 (546)
438 1htw_A HI0065; nucleotide-bind 69.5 2.5 8.4E-05 42.6 3.0 25 405-429 33-57 (158)
439 2gza_A Type IV secretion syste 69.4 2.5 8.6E-05 48.2 3.4 24 405-428 175-198 (361)
440 3jux_A Protein translocase sub 69.1 2.1 7.3E-05 53.4 2.9 71 393-466 78-152 (822)
441 2ck3_D ATP synthase subunit be 69.0 5.4 0.00018 47.4 6.2 62 396-457 141-207 (482)
442 2yv5_A YJEQ protein; hydrolase 68.9 3.6 0.00012 45.6 4.6 31 396-426 156-186 (302)
443 4hlc_A DTMP kinase, thymidylat 68.7 5 0.00017 42.1 5.3 34 406-441 3-36 (205)
444 1x6v_B Bifunctional 3'-phospho 68.2 4.1 0.00014 50.0 5.2 50 390-440 34-86 (630)
445 4akg_A Glutathione S-transfera 68.1 3.3 0.00011 58.8 4.7 30 399-428 1260-1290(2695)
446 2rcn_A Probable GTPase ENGC; Y 67.4 3.9 0.00014 46.8 4.5 30 397-426 207-236 (358)
447 2dyk_A GTP-binding protein; GT 67.4 2.9 0.0001 40.1 3.0 19 408-426 4-22 (161)
448 2pt7_A CAG-ALFA; ATPase, prote 67.1 2.3 7.8E-05 48.0 2.5 24 405-428 171-194 (330)
449 2f9l_A RAB11B, member RAS onco 66.9 2.9 0.0001 42.5 3.1 20 408-427 8-27 (199)
450 3qf7_A RAD50; ABC-ATPase, ATPa 66.5 2.9 0.0001 47.7 3.2 26 405-430 23-48 (365)
451 2lv9_A Histone-lysine N-methyl 66.2 4.4 0.00015 37.9 3.8 25 143-170 29-54 (98)
452 3qkt_A DNA double-strand break 66.1 3.2 0.00011 46.7 3.4 26 405-430 23-48 (339)
453 1nrj_B SR-beta, signal recogni 65.8 3.3 0.00011 42.5 3.2 22 406-427 13-34 (218)
454 1u0l_A Probable GTPase ENGC; p 65.8 4.3 0.00015 44.9 4.3 31 396-426 160-190 (301)
455 1bif_A 6-phosphofructo-2-kinas 65.7 3.3 0.00011 48.8 3.5 26 407-432 41-66 (469)
456 1oix_A RAS-related protein RAB 65.6 3 0.0001 42.3 2.8 21 407-427 31-51 (191)
457 1p5z_B DCK, deoxycytidine kina 65.4 1.3 4.4E-05 47.8 -0.0 24 406-429 25-48 (263)
458 1z2a_A RAS-related protein RAB 64.8 3.5 0.00012 39.8 3.0 19 408-426 8-26 (168)
459 3tqf_A HPR(Ser) kinase; transf 64.7 3.4 0.00012 42.9 2.9 21 407-427 18-38 (181)
460 1kao_A RAP2A; GTP-binding prot 64.4 3.6 0.00012 39.5 3.0 19 408-426 6-24 (167)
461 2ce2_X GTPase HRAS; signaling 64.0 3.5 0.00012 39.4 2.8 19 408-426 6-24 (166)
462 2wji_A Ferrous iron transport 64.0 3.7 0.00013 40.3 3.0 20 407-426 5-24 (165)
463 1tq4_A IIGP1, interferon-induc 63.7 3.9 0.00013 47.7 3.6 36 392-427 55-91 (413)
464 3fdi_A Uncharacterized protein 63.6 3.7 0.00013 42.8 3.1 25 405-429 6-30 (201)
465 2dpy_A FLII, flagellum-specifi 63.2 4.3 0.00015 47.7 3.9 54 396-450 145-201 (438)
466 2onk_A Molybdate/tungstate ABC 63.0 3.8 0.00013 44.1 3.1 33 406-439 25-57 (240)
467 1dek_A Deoxynucleoside monopho 63.0 7.3 0.00025 42.1 5.3 44 407-456 3-46 (241)
468 1fx0_B ATP synthase beta chain 63.0 5.8 0.0002 47.3 4.9 61 397-457 154-219 (498)
469 2ged_A SR-beta, signal recogni 62.9 3.9 0.00013 40.9 3.0 20 407-426 50-69 (193)
470 1wms_A RAB-9, RAB9, RAS-relate 62.8 4 0.00014 40.0 3.0 19 408-426 10-28 (177)
471 1ek0_A Protein (GTP-binding pr 62.6 4.1 0.00014 39.3 3.0 19 408-426 6-24 (170)
472 2pcj_A ABC transporter, lipopr 62.6 3.7 0.00013 43.6 2.9 34 405-439 30-63 (224)
473 2cbz_A Multidrug resistance-as 62.6 3.6 0.00012 44.1 2.8 34 405-439 31-64 (237)
474 1ky3_A GTP-binding protein YPT 62.6 4 0.00014 39.9 3.0 19 408-426 11-29 (182)
475 1u8z_A RAS-related protein RAL 62.4 4.2 0.00014 39.1 3.0 19 408-426 7-25 (168)
476 1m8p_A Sulfate adenylyltransfe 62.1 6.3 0.00022 47.9 5.2 34 407-440 398-431 (573)
477 1sgw_A Putative ABC transporte 62.1 4.1 0.00014 43.1 3.1 35 405-440 35-69 (214)
478 3tif_A Uncharacterized ABC tra 61.9 4.1 0.00014 43.5 3.1 35 405-440 31-65 (235)
479 1g16_A RAS-related protein SEC 61.9 4 0.00014 39.5 2.8 19 408-426 6-24 (170)
480 3cr8_A Sulfate adenylyltranfer 61.4 4.9 0.00017 48.7 4.0 36 405-440 369-404 (552)
481 2erx_A GTP-binding protein DI- 61.4 4.4 0.00015 39.2 3.0 19 408-426 6-24 (172)
482 2nzj_A GTP-binding protein REM 61.2 4.4 0.00015 39.4 3.0 19 408-426 7-25 (175)
483 2d2e_A SUFC protein; ABC-ATPas 61.1 4.5 0.00016 43.6 3.3 23 405-427 29-51 (250)
484 1z0j_A RAB-22, RAS-related pro 60.9 4.6 0.00016 39.1 3.0 19 408-426 9-27 (170)
485 1r2q_A RAS-related protein RAB 60.8 4.6 0.00016 38.9 3.0 19 408-426 9-27 (170)
486 1lw7_A Transcriptional regulat 60.7 4.1 0.00014 46.2 3.0 23 406-428 171-193 (365)
487 1z08_A RAS-related protein RAB 60.4 4.7 0.00016 39.1 3.0 19 408-426 9-27 (170)
488 3q85_A GTP-binding protein REM 60.3 4.8 0.00016 39.1 3.0 19 408-426 5-23 (169)
489 2lkc_A Translation initiation 60.2 4.8 0.00016 39.4 3.1 21 406-426 9-29 (178)
490 1c1y_A RAS-related protein RAP 60.1 4.8 0.00017 38.8 3.0 19 408-426 6-24 (167)
491 2zej_A Dardarin, leucine-rich 60.1 4 0.00014 40.9 2.5 19 408-426 5-23 (184)
492 2zu0_C Probable ATP-dependent 60.1 4.8 0.00016 43.9 3.3 36 405-440 46-82 (267)
493 2pze_A Cystic fibrosis transme 59.9 4.2 0.00014 43.2 2.8 34 405-439 34-67 (229)
494 2ius_A DNA translocase FTSK; n 59.9 7 0.00024 46.8 5.0 39 405-443 167-208 (512)
495 1b0u_A Histidine permease; ABC 59.8 4.6 0.00016 43.9 3.1 34 405-439 32-65 (262)
496 1g6h_A High-affinity branched- 59.7 4.7 0.00016 43.6 3.1 35 405-440 33-67 (257)
497 2ck3_A ATP synthase subunit al 59.7 15 0.00053 43.8 7.7 63 396-458 150-224 (510)
498 1svi_A GTP-binding protein YSX 59.7 4.4 0.00015 40.5 2.7 21 406-426 24-44 (195)
499 1ji0_A ABC transporter; ATP bi 59.7 4.8 0.00016 43.1 3.1 35 405-440 32-66 (240)
500 2y8e_A RAB-protein 6, GH09086P 59.3 4.7 0.00016 39.3 2.8 19 408-426 17-35 (179)
No 1
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=100.00 E-value=1.1e-131 Score=1240.63 Aligned_cols=694 Identities=73% Similarity=1.248 Sum_probs=622.9
Q ss_pred ccCCcccccccCCCCCCceeecCCCCcCceeeCCCCCCCcchhhhhHhhcccceeeecCCCCCcccchhhccccCccccc
Q 001054 138 ADFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFL 217 (1171)
Q Consensus 138 ~~~~~~~c~yc~~~~~~~~~~c~~~~~~~wfcn~~~~~~~shi~~hl~~~~~~~~~lh~~~~~~~~~l~cy~c~~~n~f~ 217 (1171)
+++|+|||+|||||+|+|||+|++ |+|||||||++|++||||+||||+|||||+||||+|||||+||||+||+||||+
T Consensus 2 ~~~~~~~c~~c~~~~~~~~~~~~~--~~~~fcn~~~~~~~shi~~h~~~~~~~~~~~~~~~~~~~~~~ec~~c~~~n~f~ 79 (800)
T 2wjy_A 2 KDLPIHACSYCGIHDPACVVYCNT--SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFL 79 (800)
T ss_dssp CCCCTTSCTTTCCCCGGGEEEETT--TTEEEESCCTTSSSCHHHHHHHHHTCCCEEECTTSTTCSCBCCCTTTCCCCTTT
T ss_pred CCCCchhccccCCCCCCeEEEcCC--CCCccccCCCCCcccHHHHHHHHccCceEecCCCCCCCCceEEEeccCCCceee
Confidence 578999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeccCCCeEEEEcchHHHH----------------------------------------------------------
Q 001054 218 LGFISAKTESVVVLLCREPCLN---------------------------------------------------------- 239 (1171)
Q Consensus 218 lg~~~~~~~~~~v~lcr~~c~~---------------------------------------------------------- 239 (1171)
|||||+|+|+|||||||+||+.
T Consensus 80 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 159 (800)
T 2wjy_A 80 LGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENP 159 (800)
T ss_dssp CEEEC-----CCEECCTTTTSSTTC----------CEESBCSSSBCTTTSCCCCHHHHHHSCCCCHHHHHHHHHHHTTCT
T ss_pred eeceecccCceEEEEecCcccccchhhccCCCHHhcccccccccccHhhcCCCCHHHHhhhcCCCHHHHHHHHHHhccCc
Confidence 9999999999999999999976
Q ss_pred ---------------------------------------------HhhhccccccEEEEEEeccCCeEEEEEEccCCCCC
Q 001054 240 ---------------------------------------------MMKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDNE 274 (1171)
Q Consensus 240 ---------------------------------------------~~ke~~~~~~i~~r~~~~l~~k~~~~~~~~~~~~~ 274 (1171)
.++|++...+++++|++++++|.+++|.++..+.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~v~~~y~~~~~Y~~~~~~l~~lE~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (800)
T 2wjy_A 160 SATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSD 239 (800)
T ss_dssp TCCTTC--------CCCCCCSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEECCEEEECTTCCEEEEECCCBCCC-
T ss_pred CcchhhhhhccccccccccccccCCHHHHHHHHHHHHHHHHHhhhhhhhhhhccceEEEEEecCCCeeEEEEEeccccCC
Confidence 34566777899999999999999999999887778
Q ss_pred CCCCCCCEEEEEecCCCCCCcceEEEEEEEecc--ccEEEEEeccCCCCCcccCCCceEEEecccchHHHHHHHHHHHHH
Q 001054 275 LRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTA--QEEVALELRASQGVPVDINHGFSVDFVWKSTSFDRMQGAMKTFAV 352 (1171)
Q Consensus 275 ~~l~~GD~v~l~~~g~~~~~~~~~~G~V~ki~~--~~~v~l~l~~~~~~p~~~~~~~~v~~~~~~~s~~Rm~~AL~~~~~ 352 (1171)
.+|.+||+|.|++.+. ....|...|+|+++.+ .++|.|++......|.+....|.++++|++++|+||+.||++++.
T Consensus 240 ~~l~~GD~v~l~~~~~-~~~~~~~~g~V~~v~~~~~~~v~l~~~~~~~~p~~~~~~~~v~~~~~~~~~~r~~~aL~~~~~ 318 (800)
T 2wjy_A 240 MRLMQGDEICLRYKGD-LAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAV 318 (800)
T ss_dssp -CCCTTCEEEEEECSS-SSCCEEEEEEEEECSBTTBSCEEEEESCCTTCCTTCCSCEEEEECCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCC-CCCCceeEEEEEEEcCCCCCEEEEEEccCCCCccccCCCceEEEeecCChHHHHHHHHHHHHH
Confidence 8999999999998776 4567899999999986 468999987666677777778999999999999999999999999
Q ss_pred hhhhhhhhHHhhhcCCchhhhhhhccCCcccCCCCCCCCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHc
Q 001054 353 DETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ 432 (1171)
Q Consensus 353 ~e~~vs~~I~~~llg~~~~~~~~~~~lp~~f~~p~l~~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~ 432 (1171)
++..++.+|++.++++...+..++..+|+.|..+.+..||++|++||..++..++++|+||||||||+|+++++.+|++.
T Consensus 319 ~e~~~~~~l~~~ll~~~~~~~~~~~~l~~~~~~~~~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~ 398 (800)
T 2wjy_A 319 DETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ 398 (800)
T ss_dssp CTTSBCHHHHHHHTTCCCCCCCCCCCCCSCCSCTTSCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred hhcchhHHHHHHhcCCCCCchhhcccCccccccccccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 99889999999898876555555556677676666788999999999999999999999999999999999999999875
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHhcCCeEEEeccccccccCCcchhhhHHHHHhhccchhHHHHHHHHhhhhhhccCCch
Q 001054 433 GQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSS 512 (1171)
Q Consensus 433 ~~~rILV~ApSN~AVD~L~eRL~~~glkVVRlg~~sre~i~~~v~~l~L~~~i~~l~~~~~~~L~kL~~lk~e~~els~~ 512 (1171)
...+||+|||||+|||+|.+||.+.+++++|+++.+++.+..++..+++|..++.... ...++++.+++.+.+.+...
T Consensus 399 ~~~~ilv~a~tn~A~~~l~~~l~~~g~~vvRlg~~~r~~i~~~~~~~tlh~~~~~~~~--~~~l~~l~~~~~~~~~~~~~ 476 (800)
T 2wjy_A 399 GNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDS--MPELQKLQQLKDETGELSSA 476 (800)
T ss_dssp CSSCEEEEESSHHHHHHHHHHHHTTTCCEEECCCGGGGGCCCTTGGGBHHHHHHTCTT--CHHHHHHHHHHTTTSCCCHH
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhCcceEeecccchhhhcchhhhhhHHHHHHcCcc--HHHHHHHHHHHHhhcccChH
Confidence 5669999999999999999999999999999999998888888888999998886654 45667777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccccccCCCCcccCCCCEEEEEcCCCCCcccccccccccCceEEEeCCccCCCcee
Q 001054 513 DEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVI 592 (1171)
Q Consensus 513 dek~y~~l~r~~e~~iL~~a~VI~~T~~~a~~~~L~~~kFD~VIIDEASQasEpe~LIpL~~~~kkLILVGD~~QLpPvv 592 (1171)
+++.|+.+.+..++.+++.++||++||.+++...+...+||+||||||+|++++++|+++...++++|||||++||+|++
T Consensus 477 ~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~~~~l~~~~fd~viIDEAsQ~~e~~~li~l~~~~~~~ilvGD~~QLpPvv 556 (800)
T 2wjy_A 477 DEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVV 556 (800)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSEEEEETGGGGCTTTTTCCCSEEEETTGGGSCHHHHHHHHTTTBSEEEEEECTTSCCCCC
T ss_pred HHHHHHHHHHHHHHhhhccCCEEEEchhhhCChhhhcCCCCEEEEECCCCCCcHHHHHHHHhcCCeEEEecccccCCCee
Confidence 77888888888888999999999999999988888888999999999999999999999988889999999999999999
Q ss_pred ecHHHHhhcchHHHHHHHHHcCCccEEeeeeccCCCCCCcccccccccCcccccccccccccCCCCCCCCCCCCCeEEEE
Q 001054 593 MCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYV 672 (1171)
Q Consensus 593 ~s~~a~~~gl~~SLFERL~~~g~~~i~L~~qYRmhp~I~~f~S~lFY~g~L~~~~~~~~r~l~~~~~~~p~~~~Pvif~~ 672 (1171)
.+..+...++..|+|+||...+..+++|++|||||++|++|+|.+||+|+|.++.....+......++|+....|++|+.
T Consensus 557 ~s~~a~~~gl~~SlFerL~~~g~~~~~L~~qYRm~p~I~~f~n~~fY~g~L~~~~~~~~r~~~~~~~~~~~~~~p~~f~~ 636 (800)
T 2wjy_A 557 MCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYV 636 (800)
T ss_dssp CCHHHHHTTTTSCHHHHHHHTTCCCEECCEECSSCHHHHHHHHHHHSTTCCEESSCSGGGSCTTCCCCCSSTTSCEEEEE
T ss_pred cchhhhhcCcchHHHHHHHhCCCCceEehhhcCCCcHHHHhhHHHhcCCccccCCchhhhccccccccccCCCCCEEEEE
Confidence 99888888999999999998888889999999999999999999999999998877766666666778888889999999
Q ss_pred cCCceeecccCCcccCHHHHHHHHHHHHHHHHcCCCCCcEEEEecchhHHHHHHHHHHhccchhhhcCCCeEEecccCcc
Q 001054 673 QMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQ 752 (1171)
Q Consensus 673 ~~G~ee~~~~g~S~~N~~EA~~V~~iV~~Llk~Gv~~~dIGIITPY~aQv~~I~~~L~~~g~l~~~~~~~V~V~TVdsfQ 752 (1171)
+.|.++....+.|+.|..||+.|.+++..|++.|+++++|||||||++|+..|++.|.+.+.+.......|+|.|||+||
T Consensus 637 ~~g~e~~~~~~~S~~N~~Ea~~V~~~v~~L~~~g~~~~dIgVItPy~~Q~~~I~~~L~~~~~~~~~~~~~v~V~TVd~fQ 716 (800)
T 2wjy_A 637 TQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQ 716 (800)
T ss_dssp CCCCCEECSSBSCEECHHHHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHHHHHHHHHCSSCHHHHHTSEEECGGGGT
T ss_pred cCCceeecCCCCcccCHHHHHHHHHHHHHHHHcCCCcccEEEEeccHHHHHHHHHHHHhcCcccccccCceEEccccccC
Confidence 99988877788999999999999999999999999999999999999999999999987654443344679999999999
Q ss_pred cCccCeEEEeccccCCcCCcCCCCCcCceeeechhhccceEEEecccccccCchHHHHHHHHHhcCceecCCCcchhhhh
Q 001054 753 GREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSM 832 (1171)
Q Consensus 753 G~E~DvVILS~VRSn~~~~iGFL~D~RRLNVALTRAK~~LIIVGn~~~Ls~~~~W~~Ll~~~ke~~~lv~g~l~~l~~s~ 832 (1171)
|+|+|+||||+||++...++||+.|+|||||||||||++|+||||..+|+++++|++|++|++++++++++++.+|++++
T Consensus 717 G~E~dvVIlS~vrs~~~~~~gfl~d~rrLNVAlTRAk~~LiIvG~~~~l~~~~~w~~ll~~~~~~~~~~~~~~~~l~~~~ 796 (800)
T 2wjy_A 717 GREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESL 796 (800)
T ss_dssp TCCEEEEEEECCCCSCCCCCGGGTCHHHHHHHHTSEEEEEEEEECHHHHTSSHHHHHHHHHHHHTTCEEESCGGGCEECC
T ss_pred CCcCCEEEEEecCCCCccccccccCcchhhhhHHhhhccEEEEECHHHhccCHHHHHHHHHHHHCCCEEeCCHHHhhhhc
Confidence 99999999999999988889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccc
Q 001054 833 VQFQ 836 (1171)
Q Consensus 833 ~~~~ 836 (1171)
++++
T Consensus 797 ~~~~ 800 (800)
T 2wjy_A 797 MQFS 800 (800)
T ss_dssp CCC-
T ss_pred ccCC
Confidence 8763
No 2
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-130 Score=1227.77 Aligned_cols=692 Identities=60% Similarity=1.031 Sum_probs=600.5
Q ss_pred CccCCcccccccCCCCCCceeecCCCCcCceeeCCCCCCCcchhhhhHhhcccceeeecCCCCCcccchhhccccCcccc
Q 001054 137 KADFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVF 216 (1171)
Q Consensus 137 ~~~~~~~~c~yc~~~~~~~~~~c~~~~~~~wfcn~~~~~~~shi~~hl~~~~~~~~~lh~~~~~~~~~l~cy~c~~~n~f 216 (1171)
..++|+|||+|||||+|+|||+|++ |+|||||||++|++||||+||||||||||+||||+|||||+||||+||+||||
T Consensus 6 ~~~~~~~~c~yc~~~~~~~~~~c~~--~~~wfcn~~~~~~~shi~~hl~~~~~~~~~l~~~~~~~~~~~~c~~c~~~n~f 83 (802)
T 2xzl_A 6 SPSASDNSCAYCGIDSAKCVIKCNS--CKKWFCNTKNGTSSSHIVNHLVLSHHNVVSLHPDSDLGDTVLECYNCGRKNVF 83 (802)
T ss_dssp ------CCCTTTCCCCTTTEEEETT--TCCEEECCCSSSSSCHHHHHHHHHTCCCEEECTTSSSCSCBCCCSSSCCCCTT
T ss_pred cccCChhhCcccCCCCCceEEEeCC--CCcEecCCCCCCCccHHHHHHHHccCCeeeccCCCCCCCceeEeecCCCCcee
Confidence 4678999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred cccceeccCCCeEEEEcchHHHH---------------------------------------------------------
Q 001054 217 LLGFISAKTESVVVLLCREPCLN--------------------------------------------------------- 239 (1171)
Q Consensus 217 ~lg~~~~~~~~~~v~lcr~~c~~--------------------------------------------------------- 239 (1171)
+|||||+|+|+|||||||+||+.
T Consensus 84 ~lg~~~~~~~~~~~~~cr~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~~e~~w~~~~~~ 163 (802)
T 2xzl_A 84 LLGFVSAKSEAVVVLLCRIPCAQTKNANWDTDQWQPLIEDRQLLSWVAEQPTEEEKLKARLITPSQISKLEAKWRSNKDA 163 (802)
T ss_dssp TEEEEC------CEEEETTTTTTCC---CCGGGCEESBCSSSBCTTTSCCCCTTGGGGSCCCCHHHHHHHHHHHTTCCCC
T ss_pred eeeeeeccCCceEEEEeCCcccchhhcCCcHhhCceeecccccchhhccCCCHHHhhhhcCCCHHHHHHHHHHHhhCcCC
Confidence 99999999999999999999965
Q ss_pred -------------------------------------------HhhhccccccEEEEEEeccCCeEEEEEEccC-CCCCC
Q 001054 240 -------------------------------------------MMKESQSKDNVTIRWDIGLNKKRVAYFVFPK-EDNEL 275 (1171)
Q Consensus 240 -------------------------------------------~~ke~~~~~~i~~r~~~~l~~k~~~~~~~~~-~~~~~ 275 (1171)
.++|++.+.+++++|+++++++.++.|.++. .+.+.
T Consensus 164 ~l~d~~~~~~~~~~~~v~~~y~~~~~Y~~~~~~ll~lE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (802)
T 2xzl_A 164 TINDIDAPEEQEAIPPLLLRYQDAYEYQRSYGPLIKLEADYDKQLKESQALEHISVSWSLALNNRHLASFTLSTFESNEL 243 (802)
T ss_dssp CC------------CCCCSSCSSHHHHHHHHHHHHHHHHHHHHHHHCCC--CCBCEEEEECTTSCEEEEEC---------
T ss_pred chhhhhcccccccccccccccCCHHHHHHHHHHHHHHHHHhhhhhhhHhhccCceEeeeccCCCeEEEEEEecccccCCC
Confidence 3455667778999999999999999998886 56788
Q ss_pred CCCCCCEEEEEecCCCCCCcceEEEEEEEecc--ccEEEEEeccC-CCCCcccCCCceEEEecccchHHHHHHHHHHHHH
Q 001054 276 RLVPGDELRLRYSGDAAHPAWQSVGHVIKLTA--QEEVALELRAS-QGVPVDINHGFSVDFVWKSTSFDRMQGAMKTFAV 352 (1171)
Q Consensus 276 ~l~~GD~v~l~~~g~~~~~~~~~~G~V~ki~~--~~~v~l~l~~~-~~~p~~~~~~~~v~~~~~~~s~~Rm~~AL~~~~~ 352 (1171)
+|.+||.|.|++.+. ....|...|+|+++.+ .++|.|++... ...|.+...+|.++++|++++|+||+.||++++.
T Consensus 244 ~~~~GD~v~l~~~~~-~~~~~~~~g~V~~v~~~~~~~v~v~~~~~~~~~p~~~~~~~~v~~~~~~~~~~r~~~AL~~~~~ 322 (802)
T 2xzl_A 244 KVAIGDEMILWYSGM-QHPDWEGRGYIVRLPNSFQDTFTLELKPSKTPPPTHLTTGFTAEFIWKGTSYDRMQDALKKFAI 322 (802)
T ss_dssp CCCTTCEEEEEECSS-SSSCEEEEEEEEECCC---CCEEEEECCCSSCCCTTCCSSEEEEECCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCC-CCCceeEEEEEEEECCCCCCEEEEEEeCCCCCCccccCCCeEEEEEecCchHHHHHHHHHHHHh
Confidence 999999999998765 4567899999999986 47899998643 3346666778999999999999999999999998
Q ss_pred hhhhhhhhHHhhhcCCchhhhhhhccCCcccCCCCCCCCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHc
Q 001054 353 DETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ 432 (1171)
Q Consensus 353 ~e~~vs~~I~~~llg~~~~~~~~~~~lp~~f~~p~l~~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~ 432 (1171)
++..++.++++.++++......+...+|+.|..+.+..||++|++||..++..++++|+||||||||+|+++++.+|++.
T Consensus 323 ~~~~~~~~l~~~ll~~~~~~~~~~~~lp~~~~~~~~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~ 402 (802)
T 2xzl_A 323 DKKSISGYLYYKILGHQVVDISFDVPLPKEFSIPNFAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKI 402 (802)
T ss_dssp CTTSBCHHHHHHHHTCCCCCCCCCCCCCSCCSCTTSCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHhcCCccccccccccCcccccccccccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 88888888999898876555445555677776677789999999999999999999999999999999999999999875
Q ss_pred CCCcEEEEcCcHHHHHHHHHHHHhcCCeEEEeccccccccCCcchhhhHHHHHhhccchhHHHHHHHHhhhhhhccCCch
Q 001054 433 GQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSS 512 (1171)
Q Consensus 433 ~~~rILV~ApSN~AVD~L~eRL~~~glkVVRlg~~sre~i~~~v~~l~L~~~i~~l~~~~~~~L~kL~~lk~e~~els~~ 512 (1171)
...+||+|||||+|||+|++||.+.+++++|+++.+++.+...+..++++..++.... ..+.++.+++.+.+.+...
T Consensus 403 ~~~~ILv~a~tn~A~d~l~~rL~~~g~~ilR~g~~~r~~i~~~~~~~tl~~~~~~~~~---~~l~~l~~~~~~~~~ls~~ 479 (802)
T 2xzl_A 403 HKDRILVCAPSNVAVDHLAAKLRDLGLKVVRLTAKSREDVESSVSNLALHNLVGRGAK---GELKNLLKLKDEVGELSAS 479 (802)
T ss_dssp HCCCEEEEESSHHHHHHHHHHHHHTTCCEEECCCGGGTTSCCTTGGGBHHHHHHTTCC---THHHHHHHHHHHHSCCCHH
T ss_pred CCCeEEEEcCcHHHHHHHHHHHHhhCccEEeecccchhhhcchhhhhhHHHHHHhhcH---HHHHHHHHHHHhhccCCHH
Confidence 5569999999999999999999999999999999988888888888889888876543 2556666666666677766
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccccccCCCCcccCCCCEEEEEcCCCCCcccccccccccCceEEEeCCccCCCcee
Q 001054 513 DEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVI 592 (1171)
Q Consensus 513 dek~y~~l~r~~e~~iL~~a~VI~~T~~~a~~~~L~~~kFD~VIIDEASQasEpe~LIpL~~~~kkLILVGD~~QLpPvv 592 (1171)
+.+.|+.+.+..+..+++.++||++|+.+++...+.. +||+||||||+|++++++|+++...++++||||||+||+|++
T Consensus 480 ~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~~~~L~~-~fd~viIDEA~q~~e~~~li~l~~~~~~lilvGD~~QL~pvv 558 (802)
T 2xzl_A 480 DTKRFVKLVRKTEAEILNKADVVCCTCVGAGDKRLDT-KFRTVLIDESTQASEPECLIPIVKGAKQVILVGDHQQLGPVI 558 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEEETTGGGCTTCCS-CCSEEEETTGGGSCHHHHHHHHTTTBSEEEEEECTTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHhccCCEEEechhhcChHHHhc-cCCEEEEECccccchHHHHHHHHhCCCEEEEEeCccccCCee
Confidence 6677777777778889999999999999988877776 999999999999999999999987789999999999999999
Q ss_pred ecHHHHhhcchHHHHHHHHHcCCccEEeeeeccCCCCCCcccccccccCcccccccccccccCCCCCCCCCCCCCeEEEE
Q 001054 593 MCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYV 672 (1171)
Q Consensus 593 ~s~~a~~~gl~~SLFERL~~~g~~~i~L~~qYRmhp~I~~f~S~lFY~g~L~~~~~~~~r~l~~~~~~~p~~~~Pvif~~ 672 (1171)
.+..+...++..|+|+|+...+..+++|++|||||++|++|+|++||+|+|.++.....+......++|+....|++|+.
T Consensus 559 ~s~~a~~~gl~~slferl~~~~~~~~~L~~qYRm~p~I~~f~n~~fY~g~L~~~~~~~~r~~~~~~~~~~~~~~p~~f~~ 638 (802)
T 2xzl_A 559 LERKAADAGLKQSLFERLISLGHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKFPWPIRGIPMMFWA 638 (802)
T ss_dssp CCHHHHHTTTTCCHHHHHHHTTCCCEECCEECSSCHHHHHHHHHHHSTTCCEESSCTTTTCCTTCCCCCSSTTCCEEEEE
T ss_pred chhhhhhcCCchhHHHHHHhcCCCceEeeeecCCChHHHHHHHHHhcCCccccCCchhhhccccccCCCCCCCCCEEEEE
Confidence 99888888999999999998888889999999999999999999999999998777666665556678888889999999
Q ss_pred cCCceeecccCCcccCHHHHHHHHHHHHHHHHcCCCCCcEEEEecchhHHHHHHHHHHhccchhhhcCCCeEEecccCcc
Q 001054 673 QMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQ 752 (1171)
Q Consensus 673 ~~G~ee~~~~g~S~~N~~EA~~V~~iV~~Llk~Gv~~~dIGIITPY~aQv~~I~~~L~~~g~l~~~~~~~V~V~TVdsfQ 752 (1171)
..|.++....+.|+.|..||+.|++++.+|++.|+++++|||||||++|+..|++.|...+.+.......|+|.|||+||
T Consensus 639 ~~g~~~~~~~~~s~~N~~EA~~V~~~v~~L~~~g~~~~~IgVItpy~~Q~~~I~~~L~~~~~l~~~~~~~v~V~TVd~fQ 718 (802)
T 2xzl_A 639 NYGREEISANGTSFLNRIEAMNCERIITKLFRDGVKPEQIGVITPYEGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQ 718 (802)
T ss_dssp CCCCCEECTTSSSEECHHHHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHHHHHCSSCHHHHHTSEEEEHHHHT
T ss_pred cCCceeecCCCCCcCCHHHHHHHHHHHHHHHHcCCCcccEEEEcccHHHHHHHHHHHHHccccccccccceEEcchhhcC
Confidence 99988887888999999999999999999999999999999999999999999999987654433334579999999999
Q ss_pred cCccCeEEEeccccCCcCCcCCCCCcCceeeechhhccceEEEecccccccCchHHHHHHHHHhcCceecCCCcchhhhh
Q 001054 753 GREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSM 832 (1171)
Q Consensus 753 G~E~DvVILS~VRSn~~~~iGFL~D~RRLNVALTRAK~~LIIVGn~~~Ls~~~~W~~Ll~~~ke~~~lv~g~l~~l~~s~ 832 (1171)
|+|+|+||||+||++....+||+.++|||||||||||++||||||..+|+++++|++|++|++++++++++++.+|++++
T Consensus 719 G~E~dvVIlS~vrs~~~~~~gfl~d~rrLNVAlTRAk~~LiIvg~~~~l~~~~~w~~ll~~~~~~~~~~~~~~~~l~~~~ 798 (802)
T 2xzl_A 719 GREKDYIILSCVRANEQQAIGFLRDPRRLNVGLTRAKYGLVILGNPRSLARNTLWNHLLIHFREKGCLVEGTLDNLQLCT 798 (802)
T ss_dssp TCCEEEEEEECCCCCTTCCCGGGGCHHHHHHHHSSEEEEEEEEECHHHHTTSHHHHHHHHHHHHHTCEEEEETTEEEECC
T ss_pred CCccCEEEEEeccCCCCCCcccccCccceeeeHhhhhCeEEEEECHHHhccChHHHHHHHHHHHcCCeecCCHHHHhhhc
Confidence 99999999999999988889999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcc
Q 001054 833 VQF 835 (1171)
Q Consensus 833 ~~~ 835 (1171)
+++
T Consensus 799 ~~~ 801 (802)
T 2xzl_A 799 VQL 801 (802)
T ss_dssp CCC
T ss_pred cCC
Confidence 876
No 3
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=100.00 E-value=6.2e-90 Score=845.57 Aligned_cols=603 Identities=71% Similarity=1.195 Sum_probs=519.9
Q ss_pred EEEcchHHHHHhhhccccccEEEEEEeccCCeEEEEEEccCCCCCCCCCCCCEEEEEecCCCCCCcceEEEEEEEecc--
Q 001054 230 VLLCREPCLNMMKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTA-- 307 (1171)
Q Consensus 230 v~lcr~~c~~~~ke~~~~~~i~~r~~~~l~~k~~~~~~~~~~~~~~~l~~GD~v~l~~~g~~~~~~~~~~G~V~ki~~-- 307 (1171)
+.++++.+. .++|++.+.+++++|++++++|.+++|.++..+.+.+|..||.|+|++.++ ....|.+.|+|+++.+
T Consensus 20 l~~E~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gd~v~l~~~~~-~~~~~~~~g~v~~~~~~~ 97 (624)
T 2gk6_A 20 VKLEADYDK-KLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGD-LAPLWKGIGHVIKVPDNY 97 (624)
T ss_dssp HHHHHHHHH-HHHHHTCEEEECEEEEECTTSCEEEEEECC-------CCTTCEEEEEECSS-SSCCCEEEEEEEECSCSS
T ss_pred HHHHHHHHH-HHHhhhhccCceEEeeecCCCceEEEEEecccccCCcCCCCCEEEEEECCC-CCCCcEEEEEEEEecCCC
Confidence 334444332 567888889999999999999999999999877888999999999998776 4567999999999976
Q ss_pred ccEEEEEeccCCCCCcccCCCceEEEecccchHHHHHHHHHHHHHhhhhhhhhHHhhhcCCchhhhhhhccCCcccCCCC
Q 001054 308 QEEVALELRASQGVPVDINHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPG 387 (1171)
Q Consensus 308 ~~~v~l~l~~~~~~p~~~~~~~~v~~~~~~~s~~Rm~~AL~~~~~~e~~vs~~I~~~llg~~~~~~~~~~~lp~~f~~p~ 387 (1171)
.++|.|+++.....|.+....|.++++|++++|+||+.||++++.++..++.++++.++++......++..+|+.|..+.
T Consensus 98 ~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~al~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 177 (624)
T 2gk6_A 98 GDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQG 177 (624)
T ss_dssp CSEEEEEESCCTTCCCSCCSSEEEEECCCCHHHHHHHHHHHHHHHCTTSBCSHHHHHHTTCCCCCCCCCCCCCSCCSCTT
T ss_pred CCEEEEEEccCCCCccccccceEEEEEeCCchHHHHHHHHHHHHhccccchHHHHHHhcCCCCccccccccCcccccccc
Confidence 57899999766666777777899999999999999999999999888888888999999876655555556777777677
Q ss_pred CCCCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhcCCeEEEeccc
Q 001054 388 LPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAK 467 (1171)
Q Consensus 388 l~~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~~glkVVRlg~~ 467 (1171)
+..||++|++||..++.+++++|+||||||||+|+++++.+|++....+||+|||||+|||+|++||.+.+++++|+++.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~~~~~R~~~~ 257 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAK 257 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTTCCEEECCCT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhcCCeEEeeccc
Confidence 78999999999999999999999999999999999999999987556699999999999999999999999999999999
Q ss_pred cccccCCcchhhhHHHHHhhccchhHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHHHHHHhccccccccccccCCCCc
Q 001054 468 SREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRL 547 (1171)
Q Consensus 468 sre~i~~~v~~l~L~~~i~~l~~~~~~~L~kL~~lk~e~~els~~dek~y~~l~r~~e~~iL~~a~VI~~T~~~a~~~~L 547 (1171)
+++.+..++..++++..++.... ..++.++.+++.+.++++..+++.|+.+.+..+..+++.++||++||.+++...+
T Consensus 258 ~r~~~~~~~~~~tl~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vI~~T~~~~~~~~l 335 (624)
T 2gk6_A 258 SREAIDSPVSFLALHNQIRNMDS--MPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRL 335 (624)
T ss_dssp GGGSCCCTTTTTBHHHHHTSCSS--CHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHHTCSEEEEETGGGGCGGG
T ss_pred cchhhccchhhhhHHHHHHhccc--hHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhcCCEEEEcChhhcchhh
Confidence 98888888888889988876544 3566777777766677777777788888888888999999999999999988888
Q ss_pred ccCCCCEEEEEcCCCCCcccccccccccCceEEEeCCccCCCceeecHHHHhhcchHHHHHHHHHcCCccEEeeeeccCC
Q 001054 548 ANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMH 627 (1171)
Q Consensus 548 ~~~kFD~VIIDEASQasEpe~LIpL~~~~kkLILVGD~~QLpPvv~s~~a~~~gl~~SLFERL~~~g~~~i~L~~qYRmh 627 (1171)
...+||+||||||+|++++++|+++...++++||||||+||+|++.+..+...++..|+|+||...+..+++|++|||||
T Consensus 336 ~~~~fd~viIDEAsQ~~e~~~li~l~~~~~~~ilvGD~~QL~p~v~~~~~~~~gl~~Slferl~~~~~~~~~L~~qYR~~ 415 (624)
T 2gk6_A 336 AKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMH 415 (624)
T ss_dssp TTCCCSEEEETTGGGSCHHHHHHHHTTTBSEEEEEECTTSCCCCCSCHHHHHHTTTSCHHHHHHHTTCCCEECCEECSSC
T ss_pred hcCCCCEEEEecccccCcHHHHHHHHhcCCeEEEecChhccCCeeecHHHHHcCCchhHHHHHHhcCCCcEEehhhhCcC
Confidence 88899999999999999999999998888999999999999999999888888999999999998888889999999999
Q ss_pred CCCCcccccccccCcccccccccccccCCCCCCCCCCCCCeEEEEcCCceeecccCCcccCHHHHHHHHHHHHHHHHcCC
Q 001054 628 PSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGV 707 (1171)
Q Consensus 628 p~I~~f~S~lFY~g~L~~~~~~~~r~l~~~~~~~p~~~~Pvif~~~~G~ee~~~~g~S~~N~~EA~~V~~iV~~Llk~Gv 707 (1171)
++|++|+|.+||+|+|.++.....+......++|+....|++|+.+.|.++....+.|+.|..||..|.+++..|++.|+
T Consensus 416 ~~I~~~~n~~fY~~~L~~~~~~~~r~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~~~s~~N~~Ea~~v~~~v~~l~~~g~ 495 (624)
T 2gk6_A 416 PALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGA 495 (624)
T ss_dssp HHHHHHHHHHHSTTCCEESSCTGGGCCTTCCCCCSSTTCCEEEEECCCCEECCTTSSCCEEHHHHHHHHHHHHHHHTTTC
T ss_pred hhHHhhhHHhhcCcccccCCchhhhcccccCCCCCCCCCCEEEEEcCCcceecCCCCCccCHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999877766666666677888888999999999988877788999999999999999999999999
Q ss_pred CCCcEEEEecchhHHHHHHHHHHhccchhhhcCCCeEEecccCcccCccCeEEEeccccCCcCCcCCCCCcCceeeechh
Q 001054 708 VPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTR 787 (1171)
Q Consensus 708 ~~~dIGIITPY~aQv~~I~~~L~~~g~l~~~~~~~V~V~TVdsfQG~E~DvVILS~VRSn~~~~iGFL~D~RRLNVALTR 787 (1171)
.+++|||||||++|+..|++.|...+.+.......|+|.|||+|||+|+|+||+|+||++....+||+.|+|||||||||
T Consensus 496 ~~~dIgVItpy~~Q~~~i~~~l~~~~~~~~~~~~~v~v~TVd~fQG~E~dvVIls~vrs~~~~~~gfl~~~~rlnVAlTR 575 (624)
T 2gk6_A 496 KPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTR 575 (624)
T ss_dssp CGGGEEEECSCHHHHHHHHHHHHHSCSSCHHHHHHSEEECHHHHTTCCEEEEEEEECC------CCTTTCHHHHHHHTTS
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHhhccccccccCceEEechhhcCCcccCEEEEEeecCCCCCCccccCCcceeeeehhh
Confidence 99999999999999999999998765444334457999999999999999999999999987789999999999999999
Q ss_pred hccceEEEecccccccCchHHHHHHHHHhcCceecCCCcchhhhhhccc
Q 001054 788 ARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQ 836 (1171)
Q Consensus 788 AK~~LIIVGn~~~Ls~~~~W~~Ll~~~ke~~~lv~g~l~~l~~s~~~~~ 836 (1171)
||++||||||..+|++++.|++|++||++++|++++++.+|++++++++
T Consensus 576 Ak~~L~ivg~~~~l~~~~~~~~li~~~~~~~~~~~~~~~~l~~~~~~~~ 624 (624)
T 2gk6_A 576 ARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFS 624 (624)
T ss_dssp EEEEEEEEECHHHHTTSHHHHHHHHHHHHTTCCCCSCGGGCCCCCC---
T ss_pred hhCcEEEEECHHHHccChHHHHHHHHHHHCCCEEeCCHHHHhhhcccCC
Confidence 9999999999999999999999999999999999999999999998763
No 4
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=100.00 E-value=1.2e-80 Score=766.04 Aligned_cols=557 Identities=28% Similarity=0.407 Sum_probs=427.8
Q ss_pred cEEEEEE-eccCCeEEEEEEccCCC-----CCCCCCCCCEEEEEecCCCCCCcceEEEEEEEeccccEEEEEeccCCC--
Q 001054 249 NVTIRWD-IGLNKKRVAYFVFPKED-----NELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQG-- 320 (1171)
Q Consensus 249 ~i~~r~~-~~l~~k~~~~~~~~~~~-----~~~~l~~GD~v~l~~~g~~~~~~~~~~G~V~ki~~~~~v~l~l~~~~~-- 320 (1171)
++.+.+. .++.++.+..|...+.. ...+|++||.|.|..... . ..+...|+|+++.. ++|.|.++....
T Consensus 47 ~l~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~~Gd~v~~~~~~~-~-~~~~~~g~v~~~~~-~~i~v~~~~~~~~~ 123 (646)
T 4b3f_X 47 KLQVSSQRTGLYGRLLVTFEPRRYGSAAALPSNSFTSGDIVGLYDAAN-E-GSQLATGILTRVTQ-KSVTVAFDESHDFQ 123 (646)
T ss_dssp EEEEEEEEECSSSCEEEEEEESCC---CCCCCCCCCTTCEEEEEETTT-T-SCCCEEEEEEEEET-TEEEEECC------
T ss_pred ceEEEEEEecCCCeEEEEEEecCCCCCCCCccCCCCCCCEEEEEecCC-C-CCceEEEEEEEEeC-CEEEEEECCccccc
Confidence 5666665 67889998888766532 245899999999965443 2 23446789999974 567777654322
Q ss_pred CCcccCCCceEEEecccchHHHHHHHHHHHHHhhhhhhhhHHhhhcCCchhhhhhhccCCcccCCCCCCCCCHHHHHHHH
Q 001054 321 VPVDINHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVK 400 (1171)
Q Consensus 321 ~p~~~~~~~~v~~~~~~~s~~Rm~~AL~~~~~~e~~vs~~I~~~llg~~~~~~~~~~~lp~~f~~p~l~~LNesQ~~AV~ 400 (1171)
........|.+++.+++++|+||+.||..+..........+++.+++...+..... ..+..| ..+.||++|++||.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~r~~~al~~l~~~~~~~~~~l~~~l~~~~~p~~~~~-~~~~~~---~~~~LN~~Q~~AV~ 199 (646)
T 4b3f_X 124 LSLDRENSYRLLKLANDVTYRRLKKALIALKKYHSGPASSLIEVLFGRSAPSPASE-IHPLTF---FNTCLDTSQKEAVL 199 (646)
T ss_dssp -CCCSSCCEEEEEECCHHHHHHHHHHHHHHHTCCSSTTHHHHHHHTTSSCCCCCCC-CCCCCC---SSTTCCHHHHHHHH
T ss_pred cccCCCCcEEEEEeccchHHHHHHHHHHHhhhcccCchHHHHHHHcCCCCCCCccc-cCcccc---cCCCCCHHHHHHHH
Confidence 22334567999999999999999999999987655556667777877643221111 111122 23579999999999
Q ss_pred Hhhc-CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhcCCeEEEeccccccccCCcchhh
Q 001054 401 SVLQ-RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHL 479 (1171)
Q Consensus 401 ~aL~-~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~~glkVVRlg~~sre~i~~~v~~l 479 (1171)
.++. ++++||+||||||||+|++++|.++++.+. +||||||||+|||+|++||...+.+++|+|+..+. ...+...
T Consensus 200 ~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~-~ILv~a~TN~AvD~i~erL~~~~~~ilRlG~~~r~--~~~~~~~ 276 (646)
T 4b3f_X 200 FALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGL-KVLCCAPSNIAVDNLVERLALCKQRILRLGHPARL--LESIQQH 276 (646)
T ss_dssp HHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTC-CEEEEESSHHHHHHHHHHHHHTTCCEEECSCCSSC--CHHHHTT
T ss_pred HHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCC-eEEEEcCchHHHHHHHHHHHhcCCceEEecchhhh--hhhhhhh
Confidence 9986 679999999999999999999999999765 99999999999999999999999999999987763 2223333
Q ss_pred hHHHHHhhccch-hHHHHHH-HHhhhh---------hhccCCchH---HHHHHHHHHHHHHHHHhccccccccccccCCC
Q 001054 480 TLHYQVRHLDTS-EKSELHK-LQQLKD---------EQGELSSSD---EKKYKALKRATEREISQSADVICCTCVGAGDP 545 (1171)
Q Consensus 480 ~L~~~i~~l~~~-~~~~L~k-L~~lk~---------e~~els~~d---ek~y~~l~r~~e~~iL~~a~VI~~T~~~a~~~ 545 (1171)
++...+...+.. ....+.+ +..+.. +...+.... .+.++........+++..++||++||.+++..
T Consensus 277 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~vv~~t~~~a~~~ 356 (646)
T 4b3f_X 277 SLDAVLARSDSAQIVADIRKDIDQVFVKNKKTQDKREKSNFRNEIKLLRKELKEREEAAMLESLTSANVVLATNTGASAD 356 (646)
T ss_dssp BHHHHHTTTTCSSTHHHHHHHHTTSSTTTTC------CCSSHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEETTTTCSS
T ss_pred hHHHHHhhchHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeeehhhhhhh
Confidence 444433322211 0111111 111000 001111111 12223333344567889999999999998864
Q ss_pred C----cccCCCCEEEEEcCCCCCcccccccccccCceEEEeCCccCCCceeecHHHHhhcchHHHHHHHHHcC--CccEE
Q 001054 546 R----LANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLG--LKPIR 619 (1171)
Q Consensus 546 ~----L~~~kFD~VIIDEASQasEpe~LIpL~~~~kkLILVGD~~QLpPvv~s~~a~~~gl~~SLFERL~~~g--~~~i~ 619 (1171)
. +...+||+||||||+|++|+++|+|+. .++++||||||+||||++.+..+...++..|+|+||.... ...++
T Consensus 357 ~~~~~~~~~~Fd~vIIDEAsQ~~e~~~lipL~-~~~~~ILVGD~~QLpP~v~~~~a~~~gl~~SlferL~~~~~~~~v~~ 435 (646)
T 4b3f_X 357 GPLKLLPESYFDVVVIDECAQALEASCWIPLL-KARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVVRT 435 (646)
T ss_dssp SGGGGSCTTCCSEEEETTGGGSCHHHHTTTGG-GSSEEEEEECTTSCCCCCSCHHHHHTTTTCCHHHHHHHHHGGGTEEE
T ss_pred hHHHhhhhccCCEEEEcCccccchHHHHhhcc-ccceEEEcCCccccCceecchhhhhccccchHHHHHHHhcCCceeee
Confidence 3 455689999999999999999999986 4789999999999999999999999999999999998753 33468
Q ss_pred eeeeccCCCCCCcccccccccCcccccccccccccCCCCC--CCCCCCCCeEEEEcCCce---eecccCCcccCHHHHHH
Q 001054 620 LQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDF--PWPVPNRPMFFYVQMGQE---EISASGTSYLNRTEAAN 694 (1171)
Q Consensus 620 L~~qYRmhp~I~~f~S~lFY~g~L~~~~~~~~r~l~~~~~--~~p~~~~Pvif~~~~G~e---e~~~~g~S~~N~~EA~~ 694 (1171)
|++||||||.|++|+|++||+|+|.++.....+....+.. .++....|++|+++.|.. .....+.|+.|..||..
T Consensus 436 L~~qYRmhp~I~~f~n~~fY~g~L~~~~~~~~~~~~~lp~~~~~~~~~~p~~f~d~~g~~~~~~~~~~~~s~~N~~EA~~ 515 (646)
T 4b3f_X 436 LTVQYRMHQAIMRWASDTMYLGQLTAHSSVARHLLRDLPGVAATEETGVPLLLVDTAGCGLFELEEEDEQSKGNPGEVRL 515 (646)
T ss_dssp CCEESSSCHHHHHHHHHHHSTTCCEECTTTTTCCGGGSTTCCCCTTTTCSEEEEECTTSSCCCCC-----CCCCHHHHHH
T ss_pred cccccCCcHHHHhhhHHhhcCCccccCcchhhhhhccccccccccccCCceEEEecCCCccccccccCCccccCHHHHHH
Confidence 9999999999999999999999999887766655443322 223456799999998753 33456789999999999
Q ss_pred HHHHHHHHHHcCCCCCcEEEEecchhHHHHHHHHHHhccchhhhcCCCeEEecccCcccCccCeEEEeccccCCcCCcCC
Q 001054 695 VEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGF 774 (1171)
Q Consensus 695 V~~iV~~Llk~Gv~~~dIGIITPY~aQv~~I~~~L~~~g~l~~~~~~~V~V~TVdsfQG~E~DvVILS~VRSn~~~~iGF 774 (1171)
|..+++.|++.|+++++|||||||++|+.+|++.|... ..+|+|+|||+|||+|+|+||+|+||+|....+||
T Consensus 516 V~~~v~~L~~~gv~~~dIgVItpYraQ~~~l~~~l~~~-------~~~i~v~TVd~fQG~E~dvII~S~vrsn~~~~iGF 588 (646)
T 4b3f_X 516 VSLHIQALVDAGVPARDIAVVSPYNLQVDLLRQSLVHR-------HPELEIKSVDGFQGREKEAVILSFVRSNRKGEVGF 588 (646)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEESCHHHHHHHHHHHTTT-------CTTCEEEEGGGGTTCCEEEEEEECCCCCTTCCCCS
T ss_pred HHHHHHHHHhcCCCcCcEEEECCCHHHHHHHHHHHHHh-------CCCCEECChhhcccccCCEEEEEeccCCCCCCccc
Confidence 99999999999999999999999999999999988643 35799999999999999999999999999999999
Q ss_pred CCCcCceeeechhhccceEEEecccccccCchHHHHHHHHHhcCceecC
Q 001054 775 LNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEG 823 (1171)
Q Consensus 775 L~D~RRLNVALTRAK~~LIIVGn~~~Ls~~~~W~~Ll~~~ke~~~lv~g 823 (1171)
+.|+|||||||||||++||||||..+|+++++|++|++|++++|++..+
T Consensus 589 l~~~rRlNVAlTRAk~~liivGn~~~l~~~~~~~~li~~~~~~g~~~~~ 637 (646)
T 4b3f_X 589 LAEDRRINVAVTRARRHVAVICDSRTVNNHAFLKTLVEYFTQHGEVRTA 637 (646)
T ss_dssp TTCHHHHHHHHHTEEEEEEEEECHHHHTTSHHHHHHHHHHHHSSEEEEG
T ss_pred cCCcCcEEeEhhhhhCeEEEEEchHHhcCCHHHHHHHHHHHHCCCEeeH
Confidence 9999999999999999999999999999999999999999999998754
No 5
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=99.97 E-value=6.9e-32 Score=327.98 Aligned_cols=290 Identities=21% Similarity=0.220 Sum_probs=192.5
Q ss_pred CCCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhcCCeEEEecccc
Q 001054 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKS 468 (1171)
Q Consensus 389 ~~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~~glkVVRlg~~s 468 (1171)
..||++|++||..++..++++|+||||||||||+..++..+...+ .+|+++|||++|+++|.+++... .
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g-~~Vl~~ApT~~Aa~~L~e~~~~~---a------- 256 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLG-LEVGLCAPTGKAARRLGEVTGRT---A------- 256 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTT-CCEEEEESSHHHHHHHHHHHTSC---E-------
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcC-CeEEEecCcHHHHHHhHhhhccc---H-------
Confidence 479999999999999999999999999999999999998887765 49999999999999999976421 0
Q ss_pred ccccCCcchhhhHHHHHhhccchhHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHHHHHHhccccccccccccCCCCcc
Q 001054 469 REAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLA 548 (1171)
Q Consensus 469 re~i~~~v~~l~L~~~i~~l~~~~~~~L~kL~~lk~e~~els~~dek~y~~l~r~~e~~iL~~a~VI~~T~~~a~~~~L~ 548 (1171)
.++|..+ .... + ........
T Consensus 257 ----------~Tih~ll---------------~~~~---------------------------------~--~~~~~~~~ 276 (574)
T 3e1s_A 257 ----------STVHRLL---------------GYGP---------------------------------Q--GFRHNHLE 276 (574)
T ss_dssp ----------EEHHHHT---------------TEET---------------------------------T--EESCSSSS
T ss_pred ----------HHHHHHH---------------cCCc---------------------------------c--hhhhhhcc
Confidence 1112111 0000 0 00011112
Q ss_pred cCCCCEEEEEcCCCCCccc--ccccccccCceEEEeCCccCCCceeecHHHHhhcchHHHHHHHHHcCCccEEeeeeccC
Q 001054 549 NFRFRQVLIDESTQATEPE--CLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRM 626 (1171)
Q Consensus 549 ~~kFD~VIIDEASQasEpe--~LIpL~~~~kkLILVGD~~QLpPvv~s~~a~~~gl~~SLFERL~~~g~~~i~L~~qYRm 626 (1171)
..++|+||||||+|++... .|+..+....++|||||+.||+|+..+ +.|..+.. ..+.+.|+++||+
T Consensus 277 ~~~~dvlIIDEasml~~~~~~~Ll~~~~~~~~lilvGD~~QL~~v~~g----------~~~~~l~~-~~~~~~L~~~~R~ 345 (574)
T 3e1s_A 277 PAPYDLLIVDEVSMMGDALMLSLLAAVPPGARVLLVGDTDQLPPVDAG----------LPLLALAQ-AAPTIKLTQVYRQ 345 (574)
T ss_dssp CCSCSEEEECCGGGCCHHHHHHHHTTSCTTCEEEEEECTTSCCCSSSC----------CHHHHHHH-HSCEEECCCCCHH
T ss_pred cccCCEEEEcCccCCCHHHHHHHHHhCcCCCEEEEEecccccCCccCC----------cHHHHHHh-cCCEEEcceeEeC
Confidence 3479999999999998743 244444456899999999999999642 34555554 5678999999999
Q ss_pred C--CCCCcccccccccCcccccccccccccCCCCCCCCCCCCCeEEEEcCCceeecccCCcccCHHHHHHHHHHHHHHHH
Q 001054 627 H--PSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLR 704 (1171)
Q Consensus 627 h--p~I~~f~S~lFY~g~L~~~~~~~~r~l~~~~~~~p~~~~Pvif~~~~G~ee~~~~g~S~~N~~EA~~V~~iV~~Llk 704 (1171)
+ ..|..+++.+ ..|.+.... ....|+.....+ ..+..+.+++.
T Consensus 346 ~~~s~I~~~a~~i-~~g~~~~~~------------------~d~~~~~~~~~~------------~~~~~i~~~~~---- 390 (574)
T 3e1s_A 346 AAKNPIIQAAHGL-LHGEAPAWG------------------DKRLNLTEIEPD------------GGARRVALMVR---- 390 (574)
T ss_dssp HHTCHHHHHHHHH-HTTCCCCCC------------------BTTEEEEECCST------------TCHHHHHHHHH----
T ss_pred CCccHHHHHHHHH-hCCCCcccC------------------CCeEEEeCCCHH------------HHHHHHHHHHh----
Confidence 8 6688876554 334332100 112222221111 01233333333
Q ss_pred cCCCC-CcEEEEecchhH---HHHHHHHHHhccc----------------------------------------------
Q 001054 705 SGVVP-SQIGVITPYEGQ---RAYIVNYMSRNGA---------------------------------------------- 734 (1171)
Q Consensus 705 ~Gv~~-~dIGIITPY~aQ---v~~I~~~L~~~g~---------------------------------------------- 734 (1171)
++.+ .+|.||+|.+.. +..|...++....
T Consensus 391 -~~~~~~~~~VL~~~~~g~~gv~~lN~~l~~~lnp~~~~~~~~~~~~~~Gd~V~~~~N~~~~~v~NGdiG~i~~~~~~~l 469 (574)
T 3e1s_A 391 -ELGGPGAVQVLTPMRKGPLGMDHLNYHLQALFNPGEGGVRIAEGEARPGDTVVQTKNDYNNEIFNGTLGMVLKAEGARL 469 (574)
T ss_dssp -HTTSGGGCEEEESCSSSTTSHHHHHHHHHHHHSCCSCCEECSSSEECTTCEEEECSCBTTTTBCTTCEEEEEEECSSCE
T ss_pred -ccCcccCeEEEEeecCCchhHHHHHHHHHHHhCCCCCceeeCCeEEecCCEEEEeecCcccceecCceeEEEcCCCCEE
Confidence 4444 788888887654 4444444433110
Q ss_pred ----------hhhhcCCCeE---EecccCcccCccCeEEEeccccCCcCCcCCCCCcCceeeechhhccceEEEeccccc
Q 001054 735 ----------LRQQLYKEIE---VASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVL 801 (1171)
Q Consensus 735 ----------l~~~~~~~V~---V~TVdsfQG~E~DvVILS~VRSn~~~~iGFL~D~RRLNVALTRAK~~LIIVGn~~~L 801 (1171)
+.......++ +.|||+|||+|||.||+.++... ..+.+++++||||||||+.|+|+|+.+.|
T Consensus 470 ~v~fdg~~v~~~~~~l~~~~~ayA~TIHksQGsEfd~Vil~l~~~~-----~~~l~r~LlYvAiTRAk~~l~lvg~~~~l 544 (574)
T 3e1s_A 470 TVDFDGNVVELTGAELFNLQLGYALTVHRAQGSEWGTVLGVLHEAH-----MPMLSRNLVYTALTRARDRFFSAGSASAW 544 (574)
T ss_dssp EEEETTEEEEECGGGGTTEEECSEEEHHHHTTCCEEEEEEEECGGG-----GGGCCHHHHHHHHHTEEEEEEEEECHHHH
T ss_pred EEEECCeEEEEchHHhhhhhheeeeeHHHhCCccCCeEEEEcCCcc-----ccccccceEEEEeeeeeeEEEEEECHHHH
Confidence 0000001112 36999999999999999987654 23678999999999999999999998765
No 6
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=99.97 E-value=3.8e-31 Score=324.15 Aligned_cols=311 Identities=18% Similarity=0.198 Sum_probs=176.2
Q ss_pred CCCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHc---CCCcEEEEcCcHHHHHHHHHHHHhc------CC
Q 001054 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ---GQGQVLVCAPSNVAVDQLAEKISAT------GL 459 (1171)
Q Consensus 389 ~~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~---~~~rILV~ApSN~AVD~L~eRL~~~------gl 459 (1171)
..||++|++||... .+.++|.||||||||+|++++|.+|++. .+.+||++||||+|+++|.+||.+. .+
T Consensus 8 ~~Ln~~Q~~av~~~--~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~~~~~ 85 (647)
T 3lfu_A 8 DSLNDKQREAVAAP--RSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTSQGGM 85 (647)
T ss_dssp TTCCHHHHHHHTCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCSCCTTC
T ss_pred hcCCHHHHHHHhCC--CCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhccccCCc
Confidence 47999999999843 6788999999999999999999999986 3468999999999999999999764 22
Q ss_pred eEEEeccccccc---------cCCcchhh-------hHHHHHhhccch----hHHHH-HHHHhhhhhh---ccCC---ch
Q 001054 460 KVVRLCAKSREA---------VSSPVEHL-------TLHYQVRHLDTS----EKSEL-HKLQQLKDEQ---GELS---SS 512 (1171)
Q Consensus 460 kVVRlg~~sre~---------i~~~v~~l-------~L~~~i~~l~~~----~~~~L-~kL~~lk~e~---~els---~~ 512 (1171)
.+..+....... .......+ .+...+..+... ....+ ..+..++... ..+. ..
T Consensus 86 ~v~Tfhs~~~~il~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~~~~~~ 165 (647)
T 3lfu_A 86 WVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQSYGNP 165 (647)
T ss_dssp EEEEHHHHHHHHHHHTTGGGTCCTTCEEECHHHHHHHHHHHHHHTTCCTTTSCHHHHHHHHHHHHHTTCCCCCC----CC
T ss_pred EEEcHHHHHHHHHHHHHHHhCCCCCCEEeCHHHHHHHHHHHHHHcCCCccccCHHHHHHHHHHHHHcCCCHHHHHhccch
Confidence 222221110000 00000000 000111110000 00000 0111111110 0000 00
Q ss_pred HHH----HHHHHHHHH-HHHHHhccccccccccccC-CCCcc---cCCCCEEEEEcCCCCCcccc--cccccccCceEEE
Q 001054 513 DEK----KYKALKRAT-EREISQSADVICCTCVGAG-DPRLA---NFRFRQVLIDESTQATEPEC--LIPLVLGAKQVVL 581 (1171)
Q Consensus 513 dek----~y~~l~r~~-e~~iL~~a~VI~~T~~~a~-~~~L~---~~kFD~VIIDEASQasEpe~--LIpL~~~~kkLIL 581 (1171)
..+ .|+.+.... ....++..+++..++.... .+.+. ..+|++|||||+||++..+. +..+....+++++
T Consensus 166 ~~~~~~~i~~~y~~~~~~~~~~df~dl~~~~~~~l~~~~~~~~~~~~~~~~ilVDE~QD~~~~q~~ll~~l~~~~~~l~~ 245 (647)
T 3lfu_A 166 VEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDTGKVMI 245 (647)
T ss_dssp HHHHHHHHHHHHHHHHHHHTEEEHHHHHHHHHHHHHHCHHHHHHHHHHCCEEEESSGGGCCHHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCHHHHHHHHhhCCEEEEECcccCCHHHHHHHHHHhcCCCEEEE
Confidence 011 111111111 1112222333322221110 11111 22699999999999998764 3333335679999
Q ss_pred eCCccCCCceeecHHHHhhcchHHHHHHHHHc--CCccEEeeeeccCCCCCCcccccccccCcccccccccccccCCCCC
Q 001054 582 VGDHCQLGPVIMCKKAARAGLAQSLFERLVLL--GLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDF 659 (1171)
Q Consensus 582 VGD~~QLpPvv~s~~a~~~gl~~SLFERL~~~--g~~~i~L~~qYRmhp~I~~f~S~lFY~g~L~~~~~~~~r~l~~~~~ 659 (1171)
|||++|..+.++ +-....|.++... +...+.|++|||+++.|++++|.+|+.+....... .+
T Consensus 246 vGD~~QsIy~fr-------ga~~~~~~~~~~~~~~~~~~~L~~nyRs~~~I~~~~n~~~~~~~~~~~~~---------~~ 309 (647)
T 3lfu_A 246 VGDDDQSIYGWR-------GAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIENNNGRLGKK---------LW 309 (647)
T ss_dssp EECGGGCCCGGG-------TCCTTHHHHHHHHCTTCEEEEECBCSSSCHHHHHHHHHHHTTCSSCCCCC---------CB
T ss_pred EcCchhhhcccc-------CCCHHHHHHHHHhCCCCeEEEcccCCCCCHHHHHHHHHHHHhcccccCCc---------cc
Confidence 999999654432 2233445454443 34668999999999999999999998654321100 00
Q ss_pred CCCCCCCCeEEEEcCCceeecccCCcccCHHHHHHHHHHHHHHHHcCCCCCcEEEEecchhHHHHHHHHH
Q 001054 660 PWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYM 729 (1171)
Q Consensus 660 ~~p~~~~Pvif~~~~G~ee~~~~g~S~~N~~EA~~V~~iV~~Llk~Gv~~~dIGIITPY~aQv~~I~~~L 729 (1171)
.......++.++... ....|+..|...|.++++.|+.++||+||++++.|...|...|
T Consensus 310 ~~~~~~~~~~~~~~~------------~~~~e~~~ia~~I~~l~~~g~~~~diaVL~r~~~~~~~l~~~l 367 (647)
T 3lfu_A 310 TDGADGEPISLYCAF------------NELDEARFVVNRIKTWQDNGGALAECAILYRSNAQSRVLEEAL 367 (647)
T ss_dssp CSSCCCCCEEEEEEE------------EHHHHHHHHHHHHHHHHHTTCCGGGEEEEESSGGGHHHHHHHH
T ss_pred cCCCCCCceEEEecC------------ChHHHHHHHHHHHHHHHHcCCCccCEEEEEeCchhHHHHHHHH
Confidence 111112233333221 1256899999999999999999999999999988766555444
No 7
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=99.96 E-value=1.6e-29 Score=315.35 Aligned_cols=309 Identities=16% Similarity=0.177 Sum_probs=174.4
Q ss_pred CCCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHc---CCCcEEEEcCcHHHHHHHHHHHHhc------CC
Q 001054 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ---GQGQVLVCAPSNVAVDQLAEKISAT------GL 459 (1171)
Q Consensus 389 ~~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~---~~~rILV~ApSN~AVD~L~eRL~~~------gl 459 (1171)
..||++|++||... .+..+|.|+||||||+|++++|.+|+.. .+.+||++||||+||++|.+||.+. ++
T Consensus 10 ~~Ln~~Q~~av~~~--~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~~~~~ 87 (724)
T 1pjr_A 10 AHLNKEQQEAVRTT--EGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAAEDV 87 (724)
T ss_dssp TTSCHHHHHHHHCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGGGTTS
T ss_pred hhCCHHHHHHHhCC--CCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhcccccCc
Confidence 36999999999864 6788999999999999999999999975 3468999999999999999998763 22
Q ss_pred eEEEeccccccc---------cCCcchhh------h-HHHHHhhccch----hHHH-HHHHHhhhhhh---ccCC----c
Q 001054 460 KVVRLCAKSREA---------VSSPVEHL------T-LHYQVRHLDTS----EKSE-LHKLQQLKDEQ---GELS----S 511 (1171)
Q Consensus 460 kVVRlg~~sre~---------i~~~v~~l------~-L~~~i~~l~~~----~~~~-L~kL~~lk~e~---~els----~ 511 (1171)
.+..+.+..... .......+ . +...+..+... .... +..+..++... ..+. .
T Consensus 88 ~v~Tfhs~~~~ilr~~~~~~g~~~~f~i~d~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~~~~~~~~~~~~~~ 167 (724)
T 1pjr_A 88 WISTFHSMCVRILRRDIDRIGINRNFSILDPTDQLSVMKTILKEKNIDPKKFEPRTILGTISAAKNELLPPEQFAKRAST 167 (724)
T ss_dssp EEEEHHHHHHHHHHHHGGGGTCCTTCEECCHHHHHHHHHHHHHTTSCTTTTCCHHHHHHHHHHHHHTTCCHHHHTTC---
T ss_pred EEeeHHHHHHHHHHHHHHHhCCCCCCEECCHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHHcCCCHHHHHHhccC
Confidence 222221111000 00000000 0 00111110000 0000 01111111100 0000 0
Q ss_pred hHH----HHHHHHHHHH-HHHHHhccccccccccccC-CCCcc---cCCCCEEEEEcCCCCCccccc-cc-ccccCceEE
Q 001054 512 SDE----KKYKALKRAT-EREISQSADVICCTCVGAG-DPRLA---NFRFRQVLIDESTQATEPECL-IP-LVLGAKQVV 580 (1171)
Q Consensus 512 ~de----k~y~~l~r~~-e~~iL~~a~VI~~T~~~a~-~~~L~---~~kFD~VIIDEASQasEpe~L-Ip-L~~~~kkLI 580 (1171)
... ..|....+.. ....++..+++..+..... .+.+. ..+|++|+|||+||++..+.. +. |....++++
T Consensus 168 ~~~~~~~~iy~~Y~~~l~~~~~lDf~Dll~~~~~ll~~~~~v~~~~~~rf~~IlVDEfQDtn~~Q~~ll~~L~~~~~~l~ 247 (724)
T 1pjr_A 168 YYEKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERFQNIC 247 (724)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTEECTTHHHHHHHHHHHHCHHHHHHHHHHCSEEEESSGGGCCHHHHHHHHHHHTTTCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhCHHHHHHHHhhCCEEEEEhHhcCCHHHHHHHHHHHcCCCeEE
Confidence 000 1111111111 1112333333333322111 11111 237999999999999997742 22 222346899
Q ss_pred EeCCccCCCceeecHHHHhhcchHHHHHHHHHc--CCccEEeeeeccCCCCCCcccccccccCcccccccccccccCCCC
Q 001054 581 LVGDHCQLGPVIMCKKAARAGLAQSLFERLVLL--GLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGID 658 (1171)
Q Consensus 581 LVGD~~QLpPvv~s~~a~~~gl~~SLFERL~~~--g~~~i~L~~qYRmhp~I~~f~S~lFY~g~L~~~~~~~~r~l~~~~ 658 (1171)
+|||++|..+-+++. ....|.++... +...+.|++|||+++.|++++|.+|..+......
T Consensus 248 vVGD~~QsIY~fRGA-------~~~~~~~f~~~~~~~~~i~L~~NyRSt~~Il~~an~li~~n~~~~~k----------- 309 (724)
T 1pjr_A 248 AVGDADQSIYRWRGA-------DIQNILSFERDYPNAKVILLEQNYRSTKRILQAANEVIEHNVNRKPK----------- 309 (724)
T ss_dssp EEECGGGCCCGGGTC-------CTHHHHTHHHHSTTCEEEEECBCSSSCHHHHHHHHHHHTTCSSCCCC-----------
T ss_pred EEECchhhcccccCC-------CHHHHHHHHHHCCCCcEEECCCCCCCCHHHHHHHHHHHHhCccccCc-----------
Confidence 999999976554322 22233333221 3567899999999999999999998764322110
Q ss_pred CCCC--CCCCCeEEEEcCCceeecccCCcccCHHHHHHHHHHHHHHHH-cCCCCCcEEEEecchhHHHHHHHHH
Q 001054 659 FPWP--VPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLR-SGVVPSQIGVITPYEGQRAYIVNYM 729 (1171)
Q Consensus 659 ~~~p--~~~~Pvif~~~~G~ee~~~~g~S~~N~~EA~~V~~iV~~Llk-~Gv~~~dIGIITPY~aQv~~I~~~L 729 (1171)
..|+ ....++.++... ....|+..|+..|.+++. .|+.++||+||++.+.|...|++.|
T Consensus 310 ~l~~~~~~g~~i~~~~~~------------~~~~Ea~~va~~I~~l~~~~g~~~~diAIL~R~~~~~~~le~~L 371 (724)
T 1pjr_A 310 RIWTENPEGKPILYYEAM------------NEADEAQFVAGRIREAVERGERRYRDFAVLYRTNAQSRVMEEML 371 (724)
T ss_dssp CCBCSSCCCCCEEEEEEE------------EHHHHHHHHHHHHHHHHTTTSCCGGGEEEEESSGGGHHHHHHHH
T ss_pred ccccccCCCCceEEEecC------------CHHHHHHHHHHHHHHHHHhcCCChhheeeeeecchhHHHHHHHH
Confidence 0111 112233333221 125689999999999987 7899999999999988877665544
No 8
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=99.95 E-value=4.7e-29 Score=295.46 Aligned_cols=184 Identities=18% Similarity=0.212 Sum_probs=124.4
Q ss_pred CCCCCCHHHHHHHHHhhc-----CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhcCCeE
Q 001054 387 GLPELNASQVFAVKSVLQ-----RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKV 461 (1171)
Q Consensus 387 ~l~~LNesQ~~AV~~aL~-----~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~~glkV 461 (1171)
.+..||+.|++||..++. .++++|.|+||||||+++..++.+|...+..+|+++||||+|+++|.+++... .
T Consensus 22 ~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~---~ 98 (459)
T 3upu_A 22 TFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKE---A 98 (459)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSC---E
T ss_pred ccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhccc---h
Confidence 346899999999998764 35999999999999999999999999887668999999999999999987321 1
Q ss_pred EEeccccccccCCcchhhhHHHHHhhccchhHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHHHHHHhccccccccccc
Q 001054 462 VRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVG 541 (1171)
Q Consensus 462 VRlg~~sre~i~~~v~~l~L~~~i~~l~~~~~~~L~kL~~lk~e~~els~~dek~y~~l~r~~e~~iL~~a~VI~~T~~~ 541 (1171)
.++|..+..... ... ... .+..
T Consensus 99 -----------------~T~h~~~~~~~~---------------~~~----------------------~~~-~~~~--- 120 (459)
T 3upu_A 99 -----------------STIHSILKINPV---------------TYE----------------------ENV-LFEQ--- 120 (459)
T ss_dssp -----------------EEHHHHHTEEEE---------------ECS----------------------SCE-EEEE---
T ss_pred -----------------hhHHHHhccCcc---------------ccc----------------------ccc-hhcc---
Confidence 122222211000 000 000 0000
Q ss_pred cCCCCcccCCCCEEEEEcCCCCCccc--ccccccccCceEEEeCCccCCCceeecHHHHhhcchHHHHHHHHHcCCccEE
Q 001054 542 AGDPRLANFRFRQVLIDESTQATEPE--CLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIR 619 (1171)
Q Consensus 542 a~~~~L~~~kFD~VIIDEASQasEpe--~LIpL~~~~kkLILVGD~~QLpPvv~s~~a~~~gl~~SLFERL~~~g~~~i~ 619 (1171)
.......++++||||||+|++... .|+.+.....++++|||+.||+|+..+.... .+ ..++. ......+.
T Consensus 121 --~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~~~~~~~~vGD~~Ql~~v~~g~~~~--~l-~~~~~---~~~~~~~~ 192 (459)
T 3upu_A 121 --KEVPDLAKCRVLICDEVSMYDRKLFKILLSTIPPWCTIIGIGDNKQIRPVDPGENTA--YI-SPFFT---HKDFYQCE 192 (459)
T ss_dssp --CSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSCTTCEEEEEECTTSCCCCCTTSCSC--CC-CGGGT---CTTEEEEE
T ss_pred --cccccccCCCEEEEECchhCCHHHHHHHHHhccCCCEEEEECCHHHcCCccCCcchH--hH-HHHHh---cCCCcEEe
Confidence 001112369999999999998633 2333333567999999999999997643110 01 11111 12456789
Q ss_pred eeeeccCCCCCCcccccccc
Q 001054 620 LQVQYRMHPSLSEFPSNSFY 639 (1171)
Q Consensus 620 L~~qYRmhp~I~~f~S~lFY 639 (1171)
|++|||++..|.++++.+..
T Consensus 193 L~~~~R~~~~I~~~a~~lr~ 212 (459)
T 3upu_A 193 LTEVKRSNAPIIDVATDVRN 212 (459)
T ss_dssp CCCCCCCCCHHHHHHHHHHT
T ss_pred ceeeeeCCcHHHHHHHHHHc
Confidence 99999999999999988753
No 9
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.95 E-value=8.3e-29 Score=303.16 Aligned_cols=348 Identities=20% Similarity=0.235 Sum_probs=179.0
Q ss_pred CHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHc---CCCcEEEEcCcHHHHHHHHHHHHhcCCeEEEecccc
Q 001054 392 NASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ---GQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKS 468 (1171)
Q Consensus 392 NesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~---~~~rILV~ApSN~AVD~L~eRL~~~glkVVRlg~~s 468 (1171)
++.|+.||..++.+++++|+|+||||||||++.++..|.+. ...+|+++|||++||++|.+.+......+ .+....
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l-~l~~~~ 229 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQL-PLTDEQ 229 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHS-SCCSCC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcC-CCCHHH
Confidence 78999999999999999999999999999999999888763 33489999999999999999876421000 000000
Q ss_pred ccccCCcchhhhHHHHHhhccchhHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHHHHHHhccccccccccccCCCCcc
Q 001054 469 REAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLA 548 (1171)
Q Consensus 469 re~i~~~v~~l~L~~~i~~l~~~~~~~L~kL~~lk~e~~els~~dek~y~~l~r~~e~~iL~~a~VI~~T~~~a~~~~L~ 548 (1171)
+..+ +....++| ++...... ...+ ......
T Consensus 230 ~~~~--~~~~~Tih---------------~ll~~~~~--------~~~~-------------------------~~~~~~ 259 (608)
T 1w36_D 230 KKRI--PEDASTLH---------------RLLGAQPG--------SQRL-------------------------RHHAGN 259 (608)
T ss_dssp CCSC--SCCCBTTT---------------SCC--------------------------------------------CTTS
T ss_pred Hhcc--chhhhhhH---------------hhhccCCC--------chHH-------------------------HhccCC
Confidence 0000 00001111 11000000 0000 000111
Q ss_pred cCCCCEEEEEcCCCCCccc--ccccccccCceEEEeCCccCCCceeecHH------HHhhcchHHHHHHHHHcC------
Q 001054 549 NFRFRQVLIDESTQATEPE--CLIPLVLGAKQVVLVGDHCQLGPVIMCKK------AARAGLAQSLFERLVLLG------ 614 (1171)
Q Consensus 549 ~~kFD~VIIDEASQasEpe--~LIpL~~~~kkLILVGD~~QLpPvv~s~~------a~~~gl~~SLFERL~~~g------ 614 (1171)
..++|+||||||+|++... .|+..+....++|||||++||+|+..+.. ....++..++++++....
T Consensus 260 ~l~~d~lIIDEAsml~~~~~~~Ll~~l~~~~~liLvGD~~QL~~V~~G~vl~dl~~~~~~g~~~~~~~~l~~~~~~~~~~ 339 (608)
T 1w36_D 260 PLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPA 339 (608)
T ss_dssp CCSCSEEEECSGGGCBHHHHHHHHHTCCTTCEEEEEECTTSGGGTSTTBCHHHHGGGGTTCCCHHHHHHHHHHSSSCCCC
T ss_pred CCCCCEEEEechhhCCHHHHHHHHHhCCCCCEEEEEcchhhcCCCCCCcHHHHHHHHHhccccHHHHHHHHHhcCccccc
Confidence 2379999999999998753 34444456689999999999999975431 123567888898887642
Q ss_pred -----C-----ccEEeeeeccCCCC--CCcccccccccCcccccccccccccCCCCC-C---------------------
Q 001054 615 -----L-----KPIRLQVQYRMHPS--LSEFPSNSFYEGTLQNGVTINERQSSGIDF-P--------------------- 660 (1171)
Q Consensus 615 -----~-----~~i~L~~qYRmhp~--I~~f~S~lFY~g~L~~~~~~~~r~l~~~~~-~--------------------- 660 (1171)
. ..++|+++||++.. |..+++.+ ..|..............++.+ +
T Consensus 340 ~~~~~~~~~~~~~~~L~~~~R~~~~s~I~~la~~i-~~g~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (608)
T 1w36_D 340 GTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAI-NRGDKTAVKTVFQQDFTDIEKRLLQSGEDYIAMLEEALAGYGRY 418 (608)
T ss_dssp CSTTTTHHHHTTEEECCCCCCSSCCTTHHHHHHHH-TSCHHHHHTTTSGGGCCSSBCCBCCSTTTHHHHHHHHHHHTHHH
T ss_pred ccccccccccccEEecceeeeeCCcchHHHHHHHH-hcCCchhHHHHhcCCCCceEEEecCChHHHHHHHHHHHHHHHHH
Confidence 1 15899999999877 77776544 333321100000000000000 0
Q ss_pred --------CCCCC----CCeEEEEc--CCc---eeecccCCcccCH-------HH-----HHHHHHHHHHHHHcCCCCCc
Q 001054 661 --------WPVPN----RPMFFYVQ--MGQ---EEISASGTSYLNR-------TE-----AANVEKIVTTFLRSGVVPSQ 711 (1171)
Q Consensus 661 --------~p~~~----~Pvif~~~--~G~---ee~~~~g~S~~N~-------~E-----A~~V~~iV~~Llk~Gv~~~d 711 (1171)
+|... ........ .|. +..+.......|+ .+ -+.|+. .+.-...|+.++|
T Consensus 419 l~~~~~~~~~~~~~~~~~~~~vL~~~~~g~~gv~~lN~~i~~~l~~~~~~~~~~~~~~~~Gd~Vm~-~~Nd~~~gl~NGd 497 (608)
T 1w36_D 419 LDLLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMI-ARNDSALGLFNGD 497 (608)
T ss_dssp HHHHHTCCCSSTTHHHHTTEEEEESCSSSSSSHHHHHHHHHGGGTSCC--------------------------------
T ss_pred HHHhhcccCHHHHHHHHhhhhhhCCccCCchhHHHHHHHHHHHhCccCcccccccccccCCCeeeE-eeechhhcccCCC
Confidence 00000 00011100 010 0000000000010 00 001111 1111224788999
Q ss_pred EEEEecchhHHHHHHHHHH-hccc---hhhh---cCCCeEEecccCcccCccCeEEEeccccCCcCCcCCCCCcCceeee
Q 001054 712 IGVITPYEGQRAYIVNYMS-RNGA---LRQQ---LYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVA 784 (1171)
Q Consensus 712 IGIITPY~aQv~~I~~~L~-~~g~---l~~~---~~~~V~V~TVdsfQG~E~DvVILS~VRSn~~~~iGFL~D~RRLNVA 784 (1171)
||+|++.... +.-.+. ..+. +... ..+-..+.|||++||+|||.||+.+..... -+.+++++|||
T Consensus 498 iG~V~~~~~~---l~v~f~~~dg~~~~~~~~~l~~l~~~~a~TihksqG~e~~~v~~~~~~~~~-----~~~~~~~~Yva 569 (608)
T 1w36_D 498 IGIALDRGQG---TRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRT-----PVVTRELVYTA 569 (608)
T ss_dssp ----------------------------CCSCCCSCSSCSEEETTTTTTCCBSEEEEECCSSCC-----SSSCHHHHHHH
T ss_pred eEEEEEcCCe---EEEEEECCCCcEEEechHHCCccceEEEEEEEecccccCCeEEEEeCCCcc-----chhhhhhHHhh
Confidence 9999987522 111111 0110 1111 123466889999999999999998765432 24578999999
Q ss_pred chhhccceEEEecccc
Q 001054 785 LTRARYGIVILGNPKV 800 (1171)
Q Consensus 785 LTRAK~~LIIVGn~~~ 800 (1171)
+||||+.|+|+++...
T Consensus 570 ~tRa~~~l~l~~~~~~ 585 (608)
T 1w36_D 570 VTRARRRLSLYADERI 585 (608)
T ss_dssp HTTBSSCEEEECCTTH
T ss_pred hhhhhceEEEEECHHH
Confidence 9999999999998653
No 10
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=99.95 E-value=3.6e-28 Score=300.44 Aligned_cols=301 Identities=16% Similarity=0.132 Sum_probs=166.6
Q ss_pred CCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHc---CCCcEEEEcCcHHHHHHHHHHHHhc-------CC
Q 001054 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ---GQGQVLVCAPSNVAVDQLAEKISAT-------GL 459 (1171)
Q Consensus 390 ~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~---~~~rILV~ApSN~AVD~L~eRL~~~-------gl 459 (1171)
.||++|++||... .+..+|.|+||||||+|++++|.+|+.. .+.+||++||||+|+++|.+||.+. .+
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~~~~~ 79 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKEARGL 79 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTTTTTS
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCcccccCC
Confidence 5899999999864 7788999999999999999999999875 4569999999999999999999763 12
Q ss_pred eEEEecccccccc---------CCcchhhh---HHHHHhhccc----hhHHHHHH----HHhhhhhhccCCchH------
Q 001054 460 KVVRLCAKSREAV---------SSPVEHLT---LHYQVRHLDT----SEKSELHK----LQQLKDEQGELSSSD------ 513 (1171)
Q Consensus 460 kVVRlg~~sre~i---------~~~v~~l~---L~~~i~~l~~----~~~~~L~k----L~~lk~e~~els~~d------ 513 (1171)
.|..+.+.....+ ......+. ....++.+.. .....+.. +..++.. .+....
T Consensus 80 ~v~Tfhs~~~~il~~~~~~~g~~~~~~i~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~k~~--~~~~~~~~~~~~ 157 (673)
T 1uaa_A 80 MISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKELTEGLIEDDKVLLQQLISTISNWKND--LKTPSQAAASAI 157 (673)
T ss_dssp EEEEHHHHHHHHHHHHHHHTTCCCCCCEECHHHHHHHHHHHTSTTSCSCHHHHHHHHHHHHHHHTT--TCCTTHHHHTCC
T ss_pred EEEeHHHHHHHHHHHHHHHhCCCCCCEEeCHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHc--CCCHHHHHHHhh
Confidence 2222211110000 00000000 0000000000 00000111 1111110 001000
Q ss_pred ---H----HHHHHHHHHH-HHHHHhccccccccccccC-CCCc---ccCCCCEEEEEcCCCCCccccc--ccccccCceE
Q 001054 514 ---E----KKYKALKRAT-EREISQSADVICCTCVGAG-DPRL---ANFRFRQVLIDESTQATEPECL--IPLVLGAKQV 579 (1171)
Q Consensus 514 ---e----k~y~~l~r~~-e~~iL~~a~VI~~T~~~a~-~~~L---~~~kFD~VIIDEASQasEpe~L--IpL~~~~kkL 579 (1171)
. ..|..+.+.. ....++..+++..+..... .+.+ ...+|++|+|||+||++..+.- ..|.....++
T Consensus 158 ~~~~~~~~~i~~~Y~~~l~~~~~lDfdDll~~~~~lL~~~~~~~~~~~~~~~~ilVDEfQDt~~~Q~~ll~~L~~~~~~l 237 (673)
T 1uaa_A 158 GERDRIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQANEEVRKRWQNKIRYLLVDEYQDTNTSQYELVKLLVGSRARF 237 (673)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTCEEHHHHHHHHHHHHHHCHHHHHHHHTTCSEEEESCGGGCBHHHHHHHHHHHTTTCCE
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhChHHHHHHHhhCcEEEEeccccCCHHHHHHHHHHhcCCCeE
Confidence 0 0111111111 1112222233322221111 1111 1247999999999999987742 2233335789
Q ss_pred EEeCCccCCCceeecHHHHhhcchHHHHHHHHHc--CCccEEeeeeccCCCCCCcccccccccCcccccccccccccCCC
Q 001054 580 VLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLL--GLKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGI 657 (1171)
Q Consensus 580 ILVGD~~QLpPvv~s~~a~~~gl~~SLFERL~~~--g~~~i~L~~qYRmhp~I~~f~S~lFY~g~L~~~~~~~~r~l~~~ 657 (1171)
++|||++|....+++ -....|.++... +...+.|++|||+++.|++++|.+|..+..... ..+
T Consensus 238 ~~vGD~~QsIy~frg-------a~~~~~~~~~~~~~~~~~~~L~~nyRs~~~I~~~an~~~~~~~~~~~--------~~l 302 (673)
T 1uaa_A 238 TVVGDDDQSIYSWRG-------ARPQNLVLLSQDFPALKVIKLEQNYRSSGRILKAANILIANNPHVFE--------KRL 302 (673)
T ss_dssp EEECCGGGCCCGGGT-------BCTTHHHHHHHHSTTCEEECCCCBSSSCHHHHHHHHHHHHTSCCSSC--------CCC
T ss_pred EEEeCchhhhhhccC-------CCHHHHHHHHHhCCCCeEEECCCCCCCChHHHHHHHHHHHhchhccc--------ccc
Confidence 999999996554332 223344444432 455689999999999999999999865432110 000
Q ss_pred CCCCCCCCCCeEEEEcCCceeecccCCcccCHHHHHHHHHHHHHHH-HcCCCCCcEEEEecchhHH
Q 001054 658 DFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFL-RSGVVPSQIGVITPYEGQR 722 (1171)
Q Consensus 658 ~~~~p~~~~Pvif~~~~G~ee~~~~g~S~~N~~EA~~V~~iV~~Ll-k~Gv~~~dIGIITPY~aQv 722 (1171)
........++.++... ....|+..|+..|.+++ ..|+.++||+||++.+.|.
T Consensus 303 -~~~~~~g~~i~~~~~~------------~~~~e~~~va~~I~~l~~~~g~~~~diaVL~r~~~~~ 355 (673)
T 1uaa_A 303 -FSELGYGAELKVLSAN------------NEEHEAERVTGELIAHHFVNKTQYKDYAILYRGNHQS 355 (673)
T ss_dssp -CBSSCCCCCBEEEECS------------SHHHHHHHHHHHHHHHHHHHCCCTTTEEEEESSSGGG
T ss_pred -cccCCCCCCceEEecC------------CHHHHHHHHHHHHHHHHhccCCCccCEEEEEechhhH
Confidence 0000111233332221 12468999999999987 6799999999999865433
No 11
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=99.88 E-value=2.7e-23 Score=272.46 Aligned_cols=67 Identities=18% Similarity=0.199 Sum_probs=58.5
Q ss_pred CCCCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHcC-----CCcEEEEcCcHHHHHHHHHHHHh
Q 001054 388 LPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQG-----QGQVLVCAPSNVAVDQLAEKISA 456 (1171)
Q Consensus 388 l~~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~~-----~~rILV~ApSN~AVD~L~eRL~~ 456 (1171)
...||++|++||... .+..+|.|+||||||+|++++|.+++..+ ..+||++||||+|+++|.+||..
T Consensus 8 ~~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 8 DSTWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp --CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 357999999999875 67889999999999999999999888763 35899999999999999999865
No 12
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=99.84 E-value=2.4e-21 Score=226.84 Aligned_cols=272 Identities=16% Similarity=0.178 Sum_probs=167.1
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhcCCeEEEeccccccccCCcchhhhHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQ 484 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~~glkVVRlg~~sre~i~~~v~~l~L~~~ 484 (1171)
..+.+|.|+||||||+++.+++. ..++||+|||+.|+++|.+++.+.+.. ........+++..
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~------~~~~lVlTpT~~aa~~l~~kl~~~~~~-----------~~~~~~V~T~dsf 223 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVN------FEEDLILVPGRQAAEMIRRRANASGII-----------VATKDNVRTVDSF 223 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCC------TTTCEEEESCHHHHHHHHHHHTTTSCC-----------CCCTTTEEEHHHH
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc------cCCeEEEeCCHHHHHHHHHHhhhcCcc-----------ccccceEEEeHHh
Confidence 56889999999999999987763 148899999999999999998643210 0001112222211
Q ss_pred HhhccchhHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHHHHHHhccccccccccccCCCCcccCCCCEEEEEcCCCCC
Q 001054 485 VRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQAT 564 (1171)
Q Consensus 485 i~~l~~~~~~~L~kL~~lk~e~~els~~dek~y~~l~r~~e~~iL~~a~VI~~T~~~a~~~~L~~~kFD~VIIDEASQas 564 (1171)
+ ++.. ......+|+||||||+|+.
T Consensus 224 L-------------------------------------------~~~~-------------~~~~~~~d~liiDE~sm~~ 247 (446)
T 3vkw_A 224 L-------------------------------------------MNYG-------------KGARCQFKRLFIDEGLMLH 247 (446)
T ss_dssp H-------------------------------------------HTTT-------------SSCCCCCSEEEEETGGGSC
T ss_pred h-------------------------------------------cCCC-------------CCCCCcCCEEEEeCcccCC
Confidence 1 1000 0112358999999999998
Q ss_pred cccc--cccccccCceEEEeCCccCCCceeecHHHHhhcchHHHHHHHHHcCCccEEeeeeccCCCCCCcccccccccCc
Q 001054 565 EPEC--LIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRMHPSLSEFPSNSFYEGT 642 (1171)
Q Consensus 565 Epe~--LIpL~~~~kkLILVGD~~QLpPvv~s~~a~~~gl~~SLFERL~~~g~~~i~L~~qYRmhp~I~~f~S~lFY~g~ 642 (1171)
...+ ++.+ ...+++||+||++|||++.+... ..+..+ |.++. ......+..+|||...++.+.+.+ |+++
T Consensus 248 ~~~l~~l~~~-~~~~~vilvGD~~Qlp~v~~~~~---~~~~~~-~~~l~--~~~~~~~~~SyR~p~dv~~lLs~l-Y~~~ 319 (446)
T 3vkw_A 248 TGCVNFLVEM-SLCDIAYVYGDTQQIPYINRVTG---FPYPAH-FAKLE--VDEVETRRTTLRCPADVTHFLNQR-YEGH 319 (446)
T ss_dssp HHHHHHHHHH-TTCSEEEEEECTTSCCCCCCSTT---CCCCHH-HHSCC--CSEEEEECEESSCCHHHHHHHHTT-SSSC
T ss_pred HHHHHHHHHh-CCCCEEEEecCcccccCcccCCC---ccchhh-hhhcc--cCcEEEeeeEeCCCHHHHHHHHhh-cCCc
Confidence 6432 3333 34589999999999999976432 111111 22211 123467899999999999999886 7665
Q ss_pred ccccccccccccCCCCCCCCCCCCCeEEEEcCCceeecccCCcccCHHHHHHHHHHHHHHHHcCCCCCcEEEEecchhHH
Q 001054 643 LQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQR 722 (1171)
Q Consensus 643 L~~~~~~~~r~l~~~~~~~p~~~~Pvif~~~~G~ee~~~~g~S~~N~~EA~~V~~iV~~Llk~Gv~~~dIGIITPY~aQv 722 (1171)
+...... ...+.+....+...... ...++ +--|||+....+
T Consensus 320 V~t~s~~---------------~~sv~~~~I~~~~~~~~-----------------------~~~~~-~g~iLtftq~~k 360 (446)
T 3vkw_A 320 VMCTSSE---------------KKSVSQEMVSGAASINP-----------------------VSKPL-KGKILTFTQSDK 360 (446)
T ss_dssp CEECCCC---------------CCCEEEEECCCGGGCCT-----------------------TTSCC-CSEEEESSHHHH
T ss_pred eEECCCc---------------CceEEEecccccccccc-----------------------ccCCC-CCeEEEcCHHHH
Confidence 5321110 11222222222111000 00111 225677776666
Q ss_pred HHHHHHHHhccchhhhcCCCeE-EecccCcccCccCeEEEeccccCCcCCcCCCCCcCceeeechhhccceEEEeccccc
Q 001054 723 AYIVNYMSRNGALRQQLYKEIE-VASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVL 801 (1171)
Q Consensus 723 ~~I~~~L~~~g~l~~~~~~~V~-V~TVdsfQG~E~DvVILS~VRSn~~~~iGFL~D~RRLNVALTRAK~~LIIVGn~~~L 801 (1171)
..+.+ . .+. +.|||++||.|||.|.+......+ ...|..++.++||||||||+.|.++.-
T Consensus 361 ~~L~~----~---------G~~~~~Tv~e~QG~tf~~Vtlvr~~~~~--~~l~~~~~~~~~VALTRh~~~L~~~tv---- 421 (446)
T 3vkw_A 361 EALLS----R---------GYADVHTVHEVQGETYADVSLVRLTPTP--VSIIARDSPHVLVSLSRHTKSLKYYTV---- 421 (446)
T ss_dssp HHHHT----T---------TCCSCEETGGGTTCCEEEEEEEECCCSC--CTTCSTTCHHHHHHHSSEEEEEEEEES----
T ss_pred HHHHH----h---------CCCCccCHHHcCCcccCeEEEEECCCCC--cccccCCccceEEEeecCCCEEEEEEe----
Confidence 55542 1 234 899999999999999986543322 122335788999999999999999853
Q ss_pred ccCchHHHHHHHHHh
Q 001054 802 SKQPLWNGLLTHYKE 816 (1171)
Q Consensus 802 s~~~~W~~Ll~~~ke 816 (1171)
. +..|-+.|..++.
T Consensus 422 ~-~D~~~~~i~~~~~ 435 (446)
T 3vkw_A 422 V-MDPLVSIIRDLER 435 (446)
T ss_dssp S-CCHHHHHHHHHHH
T ss_pred c-CChHHHHHHHhhh
Confidence 2 4556666666554
No 13
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=99.84 E-value=1.4e-21 Score=255.38 Aligned_cols=169 Identities=15% Similarity=0.160 Sum_probs=96.3
Q ss_pred CCCEEEEEcCCCCCcccccc--cccc--cCceEEEeCCccCCCceeecHHHHhhcchHHHHHHHHHcCCccEEeeeeccC
Q 001054 551 RFRQVLIDESTQATEPECLI--PLVL--GAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRM 626 (1171)
Q Consensus 551 kFD~VIIDEASQasEpe~LI--pL~~--~~kkLILVGD~~QLpPvv~s~~a~~~gl~~SLFERL~~~g~~~i~L~~qYRm 626 (1171)
+|++|+|||+||++..+.-| .|.. ....+++|||++|.++-+++.. ...|.++.......+.|.+|||+
T Consensus 377 r~~~ilVDEfQDtn~~Q~~il~~L~~~~~~~~l~~VGD~kQSIY~FRGAd-------~~~~~~~~~~~~~~~~L~~NyRS 449 (1180)
T 1w36_B 377 RFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQAIYAFRGAD-------IFTYMKARSEVHAHYTLDTNWRS 449 (1180)
T ss_dssp HCSEEEECSGGGCCHHHHHHHHHHHTTCTTCEEEEEECGGGCCCGGGTCC-------HHHHHHHHHHCCCEEECCEETTS
T ss_pred CCCEEEEECCccCCHHHHHHHHHHHcCCCCCeEEEEECCccccccCcCCC-------HHHHHHHHHhcCCceeCCCCcCC
Confidence 59999999999999977422 2222 2468999999999766554322 12222233223456899999999
Q ss_pred CCCCCcccccccccCcccc---cccccc--cccCCCCCCCCCC---CCCeEEEEcCCceeecccCCcccCHHHHHHHHHH
Q 001054 627 HPSLSEFPSNSFYEGTLQN---GVTINE--RQSSGIDFPWPVP---NRPMFFYVQMGQEEISASGTSYLNRTEAANVEKI 698 (1171)
Q Consensus 627 hp~I~~f~S~lFY~g~L~~---~~~~~~--r~l~~~~~~~p~~---~~Pvif~~~~G~ee~~~~g~S~~N~~EA~~V~~i 698 (1171)
++.|++++|.+|-...... ...... ....+....|+.. ..++.++.... +. .........|+..|...
T Consensus 450 ~~~Il~~~N~lf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~---~~~~~~~~~ea~~iA~~ 525 (1180)
T 1w36_B 450 APGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEG-ES---CGVGDYQSTMAQVCAAQ 525 (1180)
T ss_dssp CHHHHHHHHHHHHSSSSTTSSTTSCCCCCEECGGGTTEEEEETTEEECSEEEEECCS-SC---CCTTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccccccCCCCcccccccccccccccccCCCCCCCeeEeecCC-Cc---cCcchHHHHHHHHHHHH
Confidence 9999999999885432100 000000 0000000000000 01232222111 00 00011124588899998
Q ss_pred HHHHHH---------------cCCCCCcEEEEecchhHHHHHHHHHH
Q 001054 699 VTTFLR---------------SGVVPSQIGVITPYEGQRAYIVNYMS 730 (1171)
Q Consensus 699 V~~Llk---------------~Gv~~~dIGIITPY~aQv~~I~~~L~ 730 (1171)
|.++++ .++.++||+||++.+.+...|.+.|.
T Consensus 526 I~~l~~~~~~~~~~~~~~~~~~~~~~~DIAIL~R~~~~~~~i~~~L~ 572 (1180)
T 1w36_B 526 IRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALT 572 (1180)
T ss_dssp HHHHHHHHHTTCEEEEETTEEEECCGGGEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHhcccccceecCCcccCCCCcccEEEEeecchHHHHHHHHHH
Confidence 888876 36788999999987766655555443
No 14
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=99.54 E-value=3.9e-15 Score=154.40 Aligned_cols=146 Identities=13% Similarity=0.097 Sum_probs=102.4
Q ss_pred eeeccCCCCCCcccccccccCcccccccccccccCCCCCCCCCCCCCeEEEEcCCceeecccCCcccCHHHHHHHHHHHH
Q 001054 621 QVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVT 700 (1171)
Q Consensus 621 ~~qYRmhp~I~~f~S~lFY~g~L~~~~~~~~r~l~~~~~~~p~~~~Pvif~~~~G~ee~~~~g~S~~N~~EA~~V~~iV~ 700 (1171)
++|||++++|+++++.++.++... .........|.+.... . ...|+..|.+.|.
T Consensus 2 ~~NYRSt~~Il~~An~li~~~~~~-------------~~~~~~G~~p~~~~~~-~------------~~~e~~~i~~~I~ 55 (174)
T 3dmn_A 2 NASYRSTQQITDFTKEILVNGEAV-------------TAFDRQGDLPNVVVTP-N------------FEAGVDQVVDQLA 55 (174)
T ss_dssp -CCCCCCHHHHHHHHTTSCC---------------------CCCCCCEEEEES-S------------HHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHhcCCCcc-------------cCCCCCCCCCEEEEeC-C------------HHHHHHHHHHHHH
Confidence 579999999999999887643200 0001112233332211 1 1357888888887
Q ss_pred HHHHcCCCCCcEEEEecchhHHHHHHHHHHhccch-------hhhcCCCeEEecccCcccCccCeEEEeccccCCcCCcC
Q 001054 701 TFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGAL-------RQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIG 773 (1171)
Q Consensus 701 ~Llk~Gv~~~dIGIITPY~aQv~~I~~~L~~~g~l-------~~~~~~~V~V~TVdsfQG~E~DvVILS~VRSn~~~~iG 773 (1171)
. ...| .++|+||++.+.|...|.+.|...+.. .......|.|+|+|++||+|||.||+..+..... .
T Consensus 56 ~-~~~g--~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~~~~~~v~v~t~~~~KGlEf~~V~~~~~~~~~~---~ 129 (174)
T 3dmn_A 56 M-NDSE--RDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQRLAPGVIVVPSFLAKGLEFDAVIVWNANQENY---Q 129 (174)
T ss_dssp H-HHHT--TCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-CCCSSEEEEEGGGCTTCCEEEEEEETCBTTTS---C
T ss_pred H-hccC--CCcEEEEecCHHHHHHHHHHHHHcCCcceeecccccccCCCeEEEEccccCCcCCCEEEEecCCcccC---C
Confidence 7 5555 789999999999999999999875321 1122357999999999999999999988754321 1
Q ss_pred CCCCcCceeeechhhccceEEEecc
Q 001054 774 FLNDPRRLNVALTRARYGIVILGNP 798 (1171)
Q Consensus 774 FL~D~RRLNVALTRAK~~LIIVGn~ 798 (1171)
...++|+||||+||||+.|+|++..
T Consensus 130 ~~~~~~llYva~TRA~~~l~~~~~~ 154 (174)
T 3dmn_A 130 REDERQLLYTICSRAMHELTLVAVG 154 (174)
T ss_dssp SGGGHHHHHHHHTTEEEEEEEEEES
T ss_pred ChhhhceeEEEecCcccEEEEEeCC
Confidence 2457899999999999999999753
No 15
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=99.27 E-value=6.1e-12 Score=164.78 Aligned_cols=148 Identities=11% Similarity=0.109 Sum_probs=93.0
Q ss_pred CCEEEEEcCCCCCcccccc--cccccCceEE--EeCC--------ccCCCceeecHHHHhhcchHHHHHHHHH-cCC---
Q 001054 552 FRQVLIDESTQATEPECLI--PLVLGAKQVV--LVGD--------HCQLGPVIMCKKAARAGLAQSLFERLVL-LGL--- 615 (1171)
Q Consensus 552 FD~VIIDEASQasEpe~LI--pL~~~~kkLI--LVGD--------~~QLpPvv~s~~a~~~gl~~SLFERL~~-~g~--- 615 (1171)
-++|+|||+|+++..+..+ .|...+++++ +||| ++|-.....+ -....|.++.. .+.
T Consensus 202 ~~~IlVDEfQD~~~~Q~~ll~~L~~~~~~~~v~lvGD~~~~~~~~~~QsIY~~rg-------a~~~~l~~~~~~~~~~~~ 274 (1166)
T 3u4q_B 202 GAHIYVDGFYQFTPQEFRVLEQLMVHAEHITFSLTADKPSYEREPHELELFRMTG-------KTYYRLHQKAKELNLDIT 274 (1166)
T ss_dssp TCEEEECSCSCCCHHHHHHHHHHHHHCSEEEEEEECSSCCSSSCCCTTCTTHHHH-------HHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEEeCcccccCCCCCCCcchhHH-------HHHHHHHHHHHHcCCCcc
Confidence 3899999999999977422 2222345554 6699 6774332211 11222333332 223
Q ss_pred ccEEeeeeccCCCCCCcccccccccCcccccccccccccCCCCCCCCCCCCCeEEEEcCCceeecccCCcccCHHHHHHH
Q 001054 616 KPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANV 695 (1171)
Q Consensus 616 ~~i~L~~qYRmhp~I~~f~S~lFY~g~L~~~~~~~~r~l~~~~~~~p~~~~Pvif~~~~G~ee~~~~g~S~~N~~EA~~V 695 (1171)
..+.|++|||+++.|+++.++.+.... ...|+....++.++.... ...|++.|
T Consensus 275 ~~~~L~~nyRs~~~il~~i~~~~~~~~---------------~~~~~~~~~~i~i~~~~~------------~~~Ea~~i 327 (1166)
T 3u4q_B 275 YKELSGTERHTKTPELAHLEAQYEARP---------------AIPYAEKQEALTVMQAAN------------RRAELEGI 327 (1166)
T ss_dssp EEEECSCSTTTTCHHHHHHHHSSSCSS---------------CCCCCSCCSSEEEEEESS------------HHHHHHHH
T ss_pred cceecCCCCCCCCHHHHHHHHhHhhcC---------------CCccCCCCCCeEEEEcCC------------hHHHHHHH
Confidence 367899999999999877655442100 001111122333332211 24689999
Q ss_pred HHHHHHHHH-cCCCCCcEEEEecch-hHHHHHHHHHHhcc
Q 001054 696 EKIVTTFLR-SGVVPSQIGVITPYE-GQRAYIVNYMSRNG 733 (1171)
Q Consensus 696 ~~iV~~Llk-~Gv~~~dIGIITPY~-aQv~~I~~~L~~~g 733 (1171)
+..|.++++ .|+.++||+||++.+ .+...|...|.+.+
T Consensus 328 a~~I~~l~~~~g~~~~diAVL~R~~~~~~~~i~~~L~~~g 367 (1166)
T 3u4q_B 328 AREIHALVREKGYRYKDVAILARQPEDYKDMVKEVFADYE 367 (1166)
T ss_dssp HHHHHHHHHTSCCCGGGEEEEESCGGGTHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCChhheEEEeCChHHHHHHHHHHHHHcC
Confidence 999999988 799999999999997 58888888887654
No 16
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=98.63 E-value=1.2e-07 Score=98.64 Aligned_cols=69 Identities=23% Similarity=0.189 Sum_probs=57.0
Q ss_pred CCCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHH-----cCCCcEEEEcCcHHHHHHHHHHHHhc
Q 001054 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAK-----QGQGQVLVCAPSNVAVDQLAEKISAT 457 (1171)
Q Consensus 389 ~~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk-----~~~~rILV~ApSN~AVD~L~eRL~~~ 457 (1171)
..+++.|++|+..++...-.+|.+|.|||||.+....+...+. ....++|+++||...++++.+++.+.
T Consensus 22 ~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 95 (207)
T 2gxq_A 22 TTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAV 95 (207)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHH
Confidence 4789999999999998888999999999999986554444332 23458999999999999999998775
No 17
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.62 E-value=1.2e-07 Score=102.71 Aligned_cols=74 Identities=23% Similarity=0.268 Sum_probs=62.1
Q ss_pred CCCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhcCCe-EEEecc
Q 001054 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLK-VVRLCA 466 (1171)
Q Consensus 389 ~~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~~glk-VVRlg~ 466 (1171)
.+|++.|++|+..++...-.+|.||+|+|||.++..++..+ ..++|+++|+...++++.+++.+.+++ +..+..
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~----~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g 166 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSG 166 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS----CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESS
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 47999999999999887779999999999999987776543 459999999999999999999887666 555543
No 18
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=98.60 E-value=5.2e-08 Score=101.64 Aligned_cols=68 Identities=22% Similarity=0.287 Sum_probs=56.1
Q ss_pred CCCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHc-----CCCcEEEEcCcHHHHHH-HHHHHHh
Q 001054 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ-----GQGQVLVCAPSNVAVDQ-LAEKISA 456 (1171)
Q Consensus 389 ~~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~-----~~~rILV~ApSN~AVD~-L~eRL~~ 456 (1171)
..|++.|++|+..++.....+|.+|+|||||.+....+..++.. ...++|+++|+...+++ +.+.+.+
T Consensus 32 ~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~ 105 (216)
T 3b6e_A 32 LQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQP 105 (216)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHH
T ss_pred CCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHH
Confidence 47999999999999987889999999999999988887766543 24589999999999888 5554443
No 19
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=98.58 E-value=1.5e-07 Score=103.78 Aligned_cols=69 Identities=19% Similarity=0.229 Sum_probs=60.8
Q ss_pred CCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhcC
Q 001054 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATG 458 (1171)
Q Consensus 390 ~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~~g 458 (1171)
+|.+.|.+|+..++...-.+|.+|.|+|||.++..++..++..+..++|+++||+..++++.+++.+.+
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~ 181 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYR 181 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhc
Confidence 689999999999888777899999999999999888877776666699999999999999999987753
No 20
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=98.57 E-value=1.2e-07 Score=98.65 Aligned_cols=70 Identities=16% Similarity=0.071 Sum_probs=55.9
Q ss_pred CCCCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHhc
Q 001054 388 LPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ--GQGQVLVCAPSNVAVDQLAEKISAT 457 (1171)
Q Consensus 388 l~~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~--~~~rILV~ApSN~AVD~L~eRL~~~ 457 (1171)
...+++.|++|+..++...-++|.+|.|||||.+....+...+.. ...++|+++||...+.++.+++.+.
T Consensus 23 ~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 94 (206)
T 1vec_A 23 WEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQV 94 (206)
T ss_dssp CCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHH
Confidence 357899999999999988889999999999997665444333222 3348999999999999999888664
No 21
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=98.56 E-value=3.5e-07 Score=96.45 Aligned_cols=69 Identities=19% Similarity=0.126 Sum_probs=56.8
Q ss_pred CCCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHhc
Q 001054 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ--GQGQVLVCAPSNVAVDQLAEKISAT 457 (1171)
Q Consensus 389 ~~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~--~~~rILV~ApSN~AVD~L~eRL~~~ 457 (1171)
..+++.|++|+..++...-.+|.+|.|||||.+....+...+.. +..++|+++||...++++.+++.+.
T Consensus 35 ~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (220)
T 1t6n_A 35 EHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERF 105 (220)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHH
Confidence 46899999999999987779999999999998776665554433 2348999999999999999887664
No 22
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=98.54 E-value=1.9e-07 Score=98.65 Aligned_cols=69 Identities=26% Similarity=0.238 Sum_probs=55.4
Q ss_pred CCCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHH-HHHHHHHc-CCCcEEEEcCcHHHHHHHHHHHHhc
Q 001054 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAA-IVYHMAKQ-GQGQVLVCAPSNVAVDQLAEKISAT 457 (1171)
Q Consensus 389 ~~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~-iI~~Llk~-~~~rILV~ApSN~AVD~L~eRL~~~ 457 (1171)
..+++.|++|+..++...-.+|.+|.|||||.+... ++..+... ...++|+++||...+.++.+++.+.
T Consensus 35 ~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (224)
T 1qde_A 35 EEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMAL 105 (224)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHH
Confidence 468999999999999887899999999999988443 34333322 3348999999999999999988764
No 23
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=98.51 E-value=9e-07 Score=95.62 Aligned_cols=72 Identities=15% Similarity=0.120 Sum_probs=57.7
Q ss_pred CCCCCCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHc-C----------CCcEEEEcCcHHHHHHHHHHH
Q 001054 386 PGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ-G----------QGQVLVCAPSNVAVDQLAEKI 454 (1171)
Q Consensus 386 p~l~~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~-~----------~~rILV~ApSN~AVD~L~eRL 454 (1171)
.+...+++.|.+|+..++...-.+|.+|.|||||.+....+...+.. . ..++|+++||...+.++.+++
T Consensus 41 ~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 120 (253)
T 1wrb_A 41 ASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSES 120 (253)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHH
Confidence 34567999999999999988888999999999998766555444332 1 248999999999999999887
Q ss_pred Hhc
Q 001054 455 SAT 457 (1171)
Q Consensus 455 ~~~ 457 (1171)
.+.
T Consensus 121 ~~~ 123 (253)
T 1wrb_A 121 QKF 123 (253)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 24
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=98.51 E-value=4e-07 Score=97.23 Aligned_cols=70 Identities=20% Similarity=0.138 Sum_probs=57.3
Q ss_pred CCCCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHH-HHHH-----cCCCcEEEEcCcHHHHHHHHHHHHhc
Q 001054 388 LPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVY-HMAK-----QGQGQVLVCAPSNVAVDQLAEKISAT 457 (1171)
Q Consensus 388 l~~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~-~Llk-----~~~~rILV~ApSN~AVD~L~eRL~~~ 457 (1171)
...+++.|++|+..++...-.+|.+|.|||||.+....+. .+.+ ....++|+++||...+.++.+++.+.
T Consensus 45 ~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 120 (236)
T 2pl3_A 45 YRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKV 120 (236)
T ss_dssp CCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 4578999999999999888899999999999997655443 3433 23458999999999999999988765
No 25
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=98.51 E-value=3.7e-07 Score=96.97 Aligned_cols=69 Identities=20% Similarity=0.156 Sum_probs=55.2
Q ss_pred CCCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHH-HHHHH-------cCCCcEEEEcCcHHHHHHHHHHHHhc
Q 001054 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIV-YHMAK-------QGQGQVLVCAPSNVAVDQLAEKISAT 457 (1171)
Q Consensus 389 ~~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI-~~Llk-------~~~~rILV~ApSN~AVD~L~eRL~~~ 457 (1171)
..+++.|++|+..++...-.+|.+|.|||||.+....+ ..+.. ....++|+++||...+.++.+++.+.
T Consensus 41 ~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 117 (228)
T 3iuy_A 41 LKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKY 117 (228)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHh
Confidence 36899999999999988888999999999998754433 33322 13458999999999999999988774
No 26
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=98.50 E-value=5.8e-07 Score=97.60 Aligned_cols=70 Identities=21% Similarity=0.145 Sum_probs=56.7
Q ss_pred CCCCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHH-HHHHHcC-CCcEEEEcCcHHHHHHHHHHHHhc
Q 001054 388 LPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIV-YHMAKQG-QGQVLVCAPSNVAVDQLAEKISAT 457 (1171)
Q Consensus 388 l~~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI-~~Llk~~-~~rILV~ApSN~AVD~L~eRL~~~ 457 (1171)
...+++.|++|+..++...-.+|.+|.|||||.+....+ ..+.... ..++|+++||...+.++.+++.+.
T Consensus 63 ~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~ 134 (249)
T 3ber_A 63 WTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEAL 134 (249)
T ss_dssp CCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 347899999999999988889999999999998765444 4444443 347999999999999999887653
No 27
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=98.46 E-value=6e-07 Score=100.61 Aligned_cols=69 Identities=17% Similarity=0.208 Sum_probs=58.0
Q ss_pred CCCCHHHHHHHHHhhcC-CcEEEEcCCCChHhHHHHHHHHHHHHc-CCCcEEEEcCcHHHHHHHHHHHHhc
Q 001054 389 PELNASQVFAVKSVLQR-PISLIQGPPGTGKTVTSAAIVYHMAKQ-GQGQVLVCAPSNVAVDQLAEKISAT 457 (1171)
Q Consensus 389 ~~LNesQ~~AV~~aL~~-~lsLIqGPPGTGKTtTla~iI~~Llk~-~~~rILV~ApSN~AVD~L~eRL~~~ 457 (1171)
..|++.|++|+..++.. ...+|.+|.|||||.+....+..++.. +..++|+++|+...++++.+++.+.
T Consensus 27 ~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 97 (367)
T 1hv8_A 27 EKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESL 97 (367)
T ss_dssp CSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHH
Confidence 46899999999999986 588999999999999877666555543 4458999999999999999988764
No 28
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=98.44 E-value=5.6e-07 Score=96.09 Aligned_cols=69 Identities=22% Similarity=0.182 Sum_probs=55.8
Q ss_pred CCCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHH-HHHHHHHc-CCCcEEEEcCcHHHHHHHHHHHHhc
Q 001054 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAA-IVYHMAKQ-GQGQVLVCAPSNVAVDQLAEKISAT 457 (1171)
Q Consensus 389 ~~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~-iI~~Llk~-~~~rILV~ApSN~AVD~L~eRL~~~ 457 (1171)
..+++.|++|+..++...-.+|.+|.|||||.+... ++..+... ...++|+++||...++++.+++.+.
T Consensus 45 ~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 115 (230)
T 2oxc_A 45 ERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAI 115 (230)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 468999999999999877889999999999987543 33433322 3458999999999999999988764
No 29
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=98.44 E-value=4.2e-07 Score=97.59 Aligned_cols=69 Identities=28% Similarity=0.246 Sum_probs=55.9
Q ss_pred CCCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHhc
Q 001054 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ--GQGQVLVCAPSNVAVDQLAEKISAT 457 (1171)
Q Consensus 389 ~~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~--~~~rILV~ApSN~AVD~L~eRL~~~ 457 (1171)
..+++.|++|+..++...-.+|.+|.|||||.+....+...+.. ...++|+++||...+.++.+++.+.
T Consensus 51 ~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 121 (237)
T 3bor_A 51 EKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILAL 121 (237)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHH
Confidence 36899999999999988789999999999998755444433322 3458999999999999999988764
No 30
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=98.43 E-value=7.5e-07 Score=102.74 Aligned_cols=67 Identities=27% Similarity=0.219 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhc
Q 001054 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT 457 (1171)
Q Consensus 390 ~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~~ 457 (1171)
.|.+.|++++..++.. -.+|.+|.|+|||.++..++..++.....++||++|+...+++..+++.+.
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~ 75 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRL 75 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 6889999999999887 789999999999999988887776655669999999999999999998765
No 31
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=98.42 E-value=1e-06 Score=94.69 Aligned_cols=69 Identities=22% Similarity=0.176 Sum_probs=55.3
Q ss_pred CCCCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHH-HHHHHc------CCCcEEEEcCcHHHHHHHHHHHHh
Q 001054 388 LPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIV-YHMAKQ------GQGQVLVCAPSNVAVDQLAEKISA 456 (1171)
Q Consensus 388 l~~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI-~~Llk~------~~~rILV~ApSN~AVD~L~eRL~~ 456 (1171)
...+++.|.+|+..++...-.+|.+|.|||||.+....+ ..+... ...++|+++||...+.++.+.+.+
T Consensus 49 ~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~ 124 (242)
T 3fe2_A 49 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAE 124 (242)
T ss_dssp CCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHH
Confidence 457899999999999988889999999999998854444 444321 244799999999999999887765
No 32
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=98.41 E-value=1e-06 Score=96.43 Aligned_cols=69 Identities=17% Similarity=0.181 Sum_probs=56.3
Q ss_pred CCCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHH-HHHHH-----cCCCcEEEEcCcHHHHHHHHHHHHhc
Q 001054 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIV-YHMAK-----QGQGQVLVCAPSNVAVDQLAEKISAT 457 (1171)
Q Consensus 389 ~~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI-~~Llk-----~~~~rILV~ApSN~AVD~L~eRL~~~ 457 (1171)
..+++.|.+|+..++...-.+|++|.|||||.+....+ ..+.+ ....++|+++||...+.++.+++.+.
T Consensus 75 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~ 149 (262)
T 3ly5_A 75 TNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKEL 149 (262)
T ss_dssp CBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 46899999999999987778999999999998855444 34443 13458999999999999999988764
No 33
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=98.40 E-value=1.4e-06 Score=96.64 Aligned_cols=65 Identities=22% Similarity=0.264 Sum_probs=55.2
Q ss_pred CCCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhc
Q 001054 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT 457 (1171)
Q Consensus 389 ~~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~~ 457 (1171)
..|++.|++|+..++...-.+|.+|.|+|||.+....+.. . ..++|+++|+...++++.+++.+.
T Consensus 15 ~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~---~-~~~~liv~P~~~L~~q~~~~~~~~ 79 (337)
T 2z0m_A 15 KNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILE---L-GMKSLVVTPTRELTRQVASHIRDI 79 (337)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHH---H-TCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHh---h-cCCEEEEeCCHHHHHHHHHHHHHH
Confidence 4689999999999998888999999999999876554433 2 359999999999999999998764
No 34
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=98.38 E-value=7.1e-07 Score=106.13 Aligned_cols=68 Identities=19% Similarity=0.237 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhc
Q 001054 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT 457 (1171)
Q Consensus 390 ~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~~ 457 (1171)
+|++.|.+||..++...-.||.||.|+|||.+...++..++..+..+|||++||...+++..+++.+.
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~ 180 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDY 180 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHh
Confidence 79999999999998877789999999999999988887777666669999999999999999998765
No 35
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=98.36 E-value=5.6e-07 Score=102.89 Aligned_cols=70 Identities=19% Similarity=0.152 Sum_probs=57.2
Q ss_pred CCCCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHhc
Q 001054 388 LPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ--GQGQVLVCAPSNVAVDQLAEKISAT 457 (1171)
Q Consensus 388 l~~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~--~~~rILV~ApSN~AVD~L~eRL~~~ 457 (1171)
...|++.|++|+..++...-++|.+|.|||||.+....+...+.. ...++|+++||...++++.+++.+.
T Consensus 41 ~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 112 (400)
T 1s2m_A 41 FEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTL 112 (400)
T ss_dssp CCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHH
Confidence 346899999999999987779999999999998766555444332 3448999999999999999888764
No 36
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=98.35 E-value=4.5e-07 Score=95.83 Aligned_cols=69 Identities=19% Similarity=0.141 Sum_probs=55.6
Q ss_pred CCCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHhc
Q 001054 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ--GQGQVLVCAPSNVAVDQLAEKISAT 457 (1171)
Q Consensus 389 ~~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~--~~~rILV~ApSN~AVD~L~eRL~~~ 457 (1171)
..+++.|++|+..++...-.+|.+|.|||||.+....+...+.. ...++|+++||...+.++.+++.+.
T Consensus 25 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 95 (219)
T 1q0u_A 25 YKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKI 95 (219)
T ss_dssp CSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHH
Confidence 46899999999999988888999999999998755444433322 2358999999999999998887653
No 37
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=98.35 E-value=1.7e-06 Score=98.30 Aligned_cols=69 Identities=19% Similarity=0.126 Sum_probs=56.6
Q ss_pred CCCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHhc
Q 001054 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ--GQGQVLVCAPSNVAVDQLAEKISAT 457 (1171)
Q Consensus 389 ~~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~--~~~rILV~ApSN~AVD~L~eRL~~~ 457 (1171)
..|.+.|++|+..++...-.+|.+|.|+|||.+....+...+.. +..++|+++||...++++.+++.+.
T Consensus 29 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 99 (391)
T 1xti_A 29 EHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERF 99 (391)
T ss_dssp CSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHH
Confidence 46899999999999988889999999999998766555444332 3448999999999999998887764
No 38
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=98.33 E-value=1.3e-06 Score=99.16 Aligned_cols=69 Identities=26% Similarity=0.220 Sum_probs=55.9
Q ss_pred CCCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHhc
Q 001054 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ--GQGQVLVCAPSNVAVDQLAEKISAT 457 (1171)
Q Consensus 389 ~~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~--~~~rILV~ApSN~AVD~L~eRL~~~ 457 (1171)
..|++.|++|+..++...-.+|.+|.|+|||.+....+...+.. ...++|+++||...++++.+++.+.
T Consensus 42 ~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 112 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMAL 112 (394)
T ss_dssp CSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHH
Confidence 47899999999999988888999999999998755444433322 3458999999999999999887654
No 39
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=98.32 E-value=1.2e-06 Score=101.20 Aligned_cols=74 Identities=20% Similarity=0.275 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhc---CCeEEEe
Q 001054 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT---GLKVVRL 464 (1171)
Q Consensus 390 ~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~~---glkVVRl 464 (1171)
++++.|++|+..++...-++|.+|.|||||.+....+..++. ...++|+++||...+.++.+++.+. ++++..+
T Consensus 21 ~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~-~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~ 97 (414)
T 3oiy_A 21 DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR-KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGF 97 (414)
T ss_dssp CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT-TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEEC
T ss_pred CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc-CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEE
Confidence 478999999999998888999999999999955544444443 3459999999999999999999874 4455444
No 40
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=98.31 E-value=7.8e-07 Score=95.50 Aligned_cols=69 Identities=20% Similarity=0.241 Sum_probs=56.1
Q ss_pred CCCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHc---CCCcEEEEcCcHHHHHHHHHHHHhc
Q 001054 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ---GQGQVLVCAPSNVAVDQLAEKISAT 457 (1171)
Q Consensus 389 ~~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~---~~~rILV~ApSN~AVD~L~eRL~~~ 457 (1171)
..+++.|++|+..++...-.+|.+|.|||||.+....+...+.. ...++|+++||...+.++.+++.+.
T Consensus 50 ~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 121 (245)
T 3dkp_A 50 QMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKI 121 (245)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 46899999999999987778999999999998855444433332 2347999999999999999988764
No 41
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=98.27 E-value=3e-06 Score=97.33 Aligned_cols=69 Identities=26% Similarity=0.268 Sum_probs=57.3
Q ss_pred CCCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHH--cCCCcEEEEcCcHHHHHHHHHHHHhc
Q 001054 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAK--QGQGQVLVCAPSNVAVDQLAEKISAT 457 (1171)
Q Consensus 389 ~~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk--~~~~rILV~ApSN~AVD~L~eRL~~~ 457 (1171)
..+++.|++|+..++...-.+|.+|.|||||.+....+...+. ....++|+++||...+.++.+++.+.
T Consensus 58 ~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 128 (410)
T 2j0s_A 58 EKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLAL 128 (410)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHH
Confidence 3689999999999998778999999999999887665554443 23458999999999999999988764
No 42
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.26 E-value=1.5e-06 Score=102.19 Aligned_cols=73 Identities=23% Similarity=0.269 Sum_probs=62.3
Q ss_pred CCCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhcCCe-EEEec
Q 001054 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLK-VVRLC 465 (1171)
Q Consensus 389 ~~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~~glk-VVRlg 465 (1171)
.+|++.|++||..++...-.+|.+|.|+|||.+....+..+ ..++||++|+...+.+..+++.+.+++ +..+.
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~----~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~ 165 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGIFGEEYVGEFS 165 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH----CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBS
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc----CCCEEEEECCHHHHHHHHHHHHhCCCcceEEEC
Confidence 47999999999999887779999999999999887776654 459999999999999999999887666 55543
No 43
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=98.25 E-value=3.2e-06 Score=100.64 Aligned_cols=76 Identities=21% Similarity=0.250 Sum_probs=61.6
Q ss_pred CCCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHcC----CCcEEEEcCcHHHHHHHHHHHHhc----CCe
Q 001054 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQG----QGQVLVCAPSNVAVDQLAEKISAT----GLK 460 (1171)
Q Consensus 389 ~~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~~----~~rILV~ApSN~AVD~L~eRL~~~----glk 460 (1171)
.+|.+.|.+||..++...-.+|.+|.|+|||.+....+.+++... ..++||++||...+.++.+.+.+. +++
T Consensus 6 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 85 (556)
T 4a2p_A 6 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYS 85 (556)
T ss_dssp --CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCC
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCce
Confidence 368999999999999877899999999999998877776666552 568999999999999998887664 555
Q ss_pred EEEe
Q 001054 461 VVRL 464 (1171)
Q Consensus 461 VVRl 464 (1171)
+..+
T Consensus 86 ~~~~ 89 (556)
T 4a2p_A 86 VQGI 89 (556)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 5554
No 44
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=98.25 E-value=2e-06 Score=98.55 Aligned_cols=69 Identities=26% Similarity=0.239 Sum_probs=56.9
Q ss_pred CCCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHhc
Q 001054 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ--GQGQVLVCAPSNVAVDQLAEKISAT 457 (1171)
Q Consensus 389 ~~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~--~~~rILV~ApSN~AVD~L~eRL~~~ 457 (1171)
..+++.|++|+..++...-.+|.+|.|||||.+....+...+.. ...++|+++||...+.++.+++.+.
T Consensus 61 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 131 (414)
T 3eiq_A 61 EKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMAL 131 (414)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHH
Confidence 46899999999999987779999999999999866555444332 3458999999999999999988764
No 45
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=98.24 E-value=3.4e-06 Score=95.49 Aligned_cols=69 Identities=22% Similarity=0.196 Sum_probs=57.2
Q ss_pred CCCCHHHHHHHHHhhcC--CcEEEEcCCCChHhHHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHhc
Q 001054 389 PELNASQVFAVKSVLQR--PISLIQGPPGTGKTVTSAAIVYHMAKQ--GQGQVLVCAPSNVAVDQLAEKISAT 457 (1171)
Q Consensus 389 ~~LNesQ~~AV~~aL~~--~lsLIqGPPGTGKTtTla~iI~~Llk~--~~~rILV~ApSN~AVD~L~eRL~~~ 457 (1171)
..+++.|++|+..++.. ...+|.+|.|||||.+....+...+.. ...++|+++||...++++.+++.+.
T Consensus 26 ~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 98 (395)
T 3pey_A 26 QKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEM 98 (395)
T ss_dssp CSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHH
Confidence 47899999999999986 788999999999999876655444332 3458999999999999999988764
No 46
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=98.24 E-value=4.7e-06 Score=95.65 Aligned_cols=69 Identities=20% Similarity=0.208 Sum_probs=55.4
Q ss_pred CCCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHH-HHHHHHHHcCC-------------------CcEEEEcCcHHHHH
Q 001054 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSA-AIVYHMAKQGQ-------------------GQVLVCAPSNVAVD 448 (1171)
Q Consensus 389 ~~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla-~iI~~Llk~~~-------------------~rILV~ApSN~AVD 448 (1171)
..+++.|++|+..++...-++|.+|.|||||.+.. .++..+...+. .++|+++||...+.
T Consensus 36 ~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~ 115 (417)
T 2i4i_A 36 TRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAV 115 (417)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHH
T ss_pred CCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHH
Confidence 46899999999999988889999999999998654 34444444321 36999999999999
Q ss_pred HHHHHHHhc
Q 001054 449 QLAEKISAT 457 (1171)
Q Consensus 449 ~L~eRL~~~ 457 (1171)
++.+++.+.
T Consensus 116 q~~~~~~~~ 124 (417)
T 2i4i_A 116 QIYEEARKF 124 (417)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988653
No 47
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=98.22 E-value=3.1e-06 Score=100.44 Aligned_cols=76 Identities=24% Similarity=0.244 Sum_probs=62.8
Q ss_pred CCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHcC----CCcEEEEcCcHHHHHHHHHHHHhc----CCeE
Q 001054 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQG----QGQVLVCAPSNVAVDQLAEKISAT----GLKV 461 (1171)
Q Consensus 390 ~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~~----~~rILV~ApSN~AVD~L~eRL~~~----glkV 461 (1171)
+|.+.|.+|+..++...-++|.+|.|+|||.+....+..++... ..++||++||...+.++.+.+.+. ++++
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 68899999999999888899999999999998877776666552 568999999999999988887664 6666
Q ss_pred EEec
Q 001054 462 VRLC 465 (1171)
Q Consensus 462 VRlg 465 (1171)
..+.
T Consensus 84 ~~~~ 87 (555)
T 3tbk_A 84 ASIS 87 (555)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 5553
No 48
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.21 E-value=2e-06 Score=104.43 Aligned_cols=70 Identities=29% Similarity=0.331 Sum_probs=47.7
Q ss_pred CCCCHHHHHHHHHhhc-----CCcEEEEcCCCChHhHHHHHHHHHHHHcC--------CCcEEEEcCcHHHHHHHH-HHH
Q 001054 389 PELNASQVFAVKSVLQ-----RPISLIQGPPGTGKTVTSAAIVYHMAKQG--------QGQVLVCAPSNVAVDQLA-EKI 454 (1171)
Q Consensus 389 ~~LNesQ~~AV~~aL~-----~~lsLIqGPPGTGKTtTla~iI~~Llk~~--------~~rILV~ApSN~AVD~L~-eRL 454 (1171)
..|.+.|.+||..++. .+-.||.++.|||||.++..++..+++.+ ..+||+++||+..++++. +.+
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 4799999999999875 45579999999999999988888887753 468999999999999887 544
Q ss_pred HhcC
Q 001054 455 SATG 458 (1171)
Q Consensus 455 ~~~g 458 (1171)
...+
T Consensus 257 ~~~~ 260 (590)
T 3h1t_A 257 TPFG 260 (590)
T ss_dssp TTTC
T ss_pred Hhcc
Confidence 4443
No 49
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=98.13 E-value=2.4e-06 Score=105.02 Aligned_cols=156 Identities=19% Similarity=0.262 Sum_probs=105.8
Q ss_pred CCCHHHHHHHHHhhc--CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhcCCeEEEeccc
Q 001054 390 ELNASQVFAVKSVLQ--RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAK 467 (1171)
Q Consensus 390 ~LNesQ~~AV~~aL~--~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~~glkVVRlg~~ 467 (1171)
.++.+|.+||...+. .++.+|+|+.|+|||+++-.++..+. .+++|||||.+|+..|.+-+.+.
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~----~~~~vtAP~~~a~~~l~~~~~~~---------- 240 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA----GRAIVTAPAKASTDVLAQFAGEK---------- 240 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS----SCEEEECSSCCSCHHHHHHHGGG----------
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH----hCcEEECCCHHHHHHHHHHhhCC----------
Confidence 689999999998876 67889999999999988877777663 36899999999999887754321
Q ss_pred cccccCCcchhhhHHHHHhhccchhHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHHHHHHhccccccccccccCCCCc
Q 001054 468 SREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRL 547 (1171)
Q Consensus 468 sre~i~~~v~~l~L~~~i~~l~~~~~~~L~kL~~lk~e~~els~~dek~y~~l~r~~e~~iL~~a~VI~~T~~~a~~~~L 547 (1171)
+.+. .. ++ ++.
T Consensus 241 --------i~~~---------~P----------------------d~-------------~~~----------------- 251 (671)
T 2zpa_A 241 --------FRFI---------AP----------------------DA-------------LLA----------------- 251 (671)
T ss_dssp --------CCBC---------CH----------------------HH-------------HHH-----------------
T ss_pred --------eEEe---------Cc----------------------hh-------------hhh-----------------
Confidence 0000 00 00 000
Q ss_pred ccCCCCEEEEEcCCCCCcccccccccccCceEEEeCCccCCCceeecHHHHhhcchHHHHHHHHHcCCccEEeeeeccC-
Q 001054 548 ANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPIRLQVQYRM- 626 (1171)
Q Consensus 548 ~~~kFD~VIIDEASQasEpe~LIpL~~~~kkLILVGD~~QLpPvv~s~~a~~~gl~~SLFERL~~~g~~~i~L~~qYRm- 626 (1171)
.....|+||||||+++..+- |..+.....+++|+....+..-+-+ +|...+...| .....+.|++-.|=
T Consensus 252 ~~~~~dlliVDEAAaIp~pl-l~~ll~~~~~v~~~tTv~GYEGtGr-------gf~lk~~~~L--~~~~~~~L~~piR~a 321 (671)
T 2zpa_A 252 SDEQADWLVVDEAAAIPAPL-LHQLVSRFPRTLLTTTVQGYEGTGR-------GFLLKFCARF--PHLHRFELQQPIRWA 321 (671)
T ss_dssp SCCCCSEEEEETGGGSCHHH-HHHHHTTSSEEEEEEEBSSTTBBCH-------HHHHHHHHTS--TTCEEEECCSCSSSC
T ss_pred CcccCCEEEEEchhcCCHHH-HHHHHhhCCeEEEEecCCcCCCcCc-------ccccccHhhc--CCCcEEEccCceecC
Confidence 01148999999999999764 3334344578999999888554422 2222233333 24566788888886
Q ss_pred -CCCCCccccccc
Q 001054 627 -HPSLSEFPSNSF 638 (1171)
Q Consensus 627 -hp~I~~f~S~lF 638 (1171)
+-.|-.|.++++
T Consensus 322 ~~DplE~wl~~~l 334 (671)
T 2zpa_A 322 QGCPLEKMVSEAL 334 (671)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHhh
Confidence 557777776665
No 50
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=98.10 E-value=1.1e-05 Score=99.38 Aligned_cols=77 Identities=23% Similarity=0.217 Sum_probs=61.9
Q ss_pred CCCCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHcCC----CcEEEEcCcHHHHHHHHHHHHhc----CC
Q 001054 388 LPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQ----GQVLVCAPSNVAVDQLAEKISAT----GL 459 (1171)
Q Consensus 388 l~~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~~~----~rILV~ApSN~AVD~L~eRL~~~----gl 459 (1171)
...|.+-|.+||..++...-++|.+|.|+|||.+....+...+.... .++||++||...+.+..+.+.+. ++
T Consensus 11 ~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~ 90 (696)
T 2ykg_A 11 PFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERHGY 90 (696)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhccCCc
Confidence 35789999999999998888999999999999988777766555432 58999999999999888887764 55
Q ss_pred eEEEe
Q 001054 460 KVVRL 464 (1171)
Q Consensus 460 kVVRl 464 (1171)
++..+
T Consensus 91 ~v~~~ 95 (696)
T 2ykg_A 91 RVTGI 95 (696)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 55544
No 51
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=98.10 E-value=1.1e-05 Score=92.25 Aligned_cols=70 Identities=20% Similarity=0.142 Sum_probs=55.6
Q ss_pred CCCCCHHHHHHHHHhhcC--CcEEEEcCCCChHhHHHHHHHHHHHH-c-CCCcEEEEcCcHHHHHHHHHHHHhc
Q 001054 388 LPELNASQVFAVKSVLQR--PISLIQGPPGTGKTVTSAAIVYHMAK-Q-GQGQVLVCAPSNVAVDQLAEKISAT 457 (1171)
Q Consensus 388 l~~LNesQ~~AV~~aL~~--~lsLIqGPPGTGKTtTla~iI~~Llk-~-~~~rILV~ApSN~AVD~L~eRL~~~ 457 (1171)
...+++.|++|+..++.. ..++|.+|.|||||.+....+...+. . ...++|+++||...+.++.+++.+.
T Consensus 45 ~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 118 (412)
T 3fht_A 45 FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQM 118 (412)
T ss_dssp CCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHH
Confidence 357899999999999985 78899999999999886544433332 2 2338999999999999998887764
No 52
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=98.09 E-value=2.4e-06 Score=106.19 Aligned_cols=68 Identities=22% Similarity=0.334 Sum_probs=56.3
Q ss_pred CCCCCHHHHHHHHH-hhcCCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHH
Q 001054 388 LPELNASQVFAVKS-VLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKIS 455 (1171)
Q Consensus 388 l~~LNesQ~~AV~~-aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~ 455 (1171)
+..|++.|.+|+.. ++.+..++|.||.|||||+++...+...+.....+|++++|+...+.++.+++.
T Consensus 28 ~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~ 96 (715)
T 2va8_A 28 IKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFK 96 (715)
T ss_dssp CCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHG
T ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHH
Confidence 45799999999998 556788999999999999998665554444334599999999999999999984
No 53
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=98.04 E-value=7.8e-06 Score=103.11 Aligned_cols=77 Identities=21% Similarity=0.248 Sum_probs=63.3
Q ss_pred CCCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHcC----CCcEEEEcCcHHHHHHHHHHHHhc----CCe
Q 001054 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQG----QGQVLVCAPSNVAVDQLAEKISAT----GLK 460 (1171)
Q Consensus 389 ~~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~~----~~rILV~ApSN~AVD~L~eRL~~~----glk 460 (1171)
..|.+.|.+||..++...-.+|.+|.|+|||.+....+..++... ..++||++||...+.++.+.+.+. +++
T Consensus 247 ~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 326 (797)
T 4a2q_A 247 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYS 326 (797)
T ss_dssp -CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCC
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCce
Confidence 478999999999999888899999999999998877777666652 568999999999999988887664 666
Q ss_pred EEEec
Q 001054 461 VVRLC 465 (1171)
Q Consensus 461 VVRlg 465 (1171)
+..+.
T Consensus 327 v~~~~ 331 (797)
T 4a2q_A 327 VQGIS 331 (797)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 65553
No 54
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=98.04 E-value=1.8e-05 Score=92.64 Aligned_cols=69 Identities=14% Similarity=0.147 Sum_probs=56.9
Q ss_pred CCCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHH-HHHHHHHHcC------CCcEEEEcCcHHHHHHHHHHHHhc
Q 001054 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSA-AIVYHMAKQG------QGQVLVCAPSNVAVDQLAEKISAT 457 (1171)
Q Consensus 389 ~~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla-~iI~~Llk~~------~~rILV~ApSN~AVD~L~eRL~~~ 457 (1171)
..+++-|++|+..++...-.++++|.|||||.+.. -++..+.+.+ ..++||++||...+.++.+.+.+.
T Consensus 77 ~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 152 (434)
T 2db3_A 77 KIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKF 152 (434)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHH
Confidence 36889999999999988889999999999998654 3455555542 348999999999999999988764
No 55
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=98.04 E-value=2.1e-05 Score=98.97 Aligned_cols=67 Identities=22% Similarity=0.254 Sum_probs=56.7
Q ss_pred CCCHHHHHHHHHhhcC------CcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhc
Q 001054 390 ELNASQVFAVKSVLQR------PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT 457 (1171)
Q Consensus 390 ~LNesQ~~AV~~aL~~------~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~~ 457 (1171)
+|++.|++|+..++.. ...||+||.|||||.+....+...+..+ .++|+++||...+.++.+++.+.
T Consensus 368 ~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g-~qvlvlaPtr~La~Q~~~~l~~~ 440 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG-FQTAFMVPTSILAIQHYRRTVES 440 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT-SCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC-CeEEEEeCcHHHHHHHHHHHHHH
Confidence 7999999999988752 3679999999999998877776666655 49999999999999999887654
No 56
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=98.02 E-value=3.2e-06 Score=104.42 Aligned_cols=75 Identities=24% Similarity=0.301 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHcC-C----CcEEEEcCcHHHHHHH-HHHHHhcC---Ce
Q 001054 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQG-Q----GQVLVCAPSNVAVDQL-AEKISATG---LK 460 (1171)
Q Consensus 390 ~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~~-~----~rILV~ApSN~AVD~L-~eRL~~~g---lk 460 (1171)
+|.+.|.+||..++...-+||.+|.|+|||.+....+..++... . .++||++|+...+.+. .+++.+.. ++
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~ 86 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYR 86 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTTSC
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcCce
Confidence 68999999999999877899999999999999888777665442 1 5899999999999888 88777643 45
Q ss_pred EEEe
Q 001054 461 VVRL 464 (1171)
Q Consensus 461 VVRl 464 (1171)
+..+
T Consensus 87 v~~~ 90 (699)
T 4gl2_A 87 VIGL 90 (699)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5444
No 57
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=98.01 E-value=6.3e-05 Score=98.57 Aligned_cols=66 Identities=24% Similarity=0.286 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHHhhc----CC--cEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHh
Q 001054 390 ELNASQVFAVKSVLQ----RP--ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISA 456 (1171)
Q Consensus 390 ~LNesQ~~AV~~aL~----~~--lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~ 456 (1171)
++++.|.+||..++. .. -.||+|+.|+|||.+....+..++..+ .++||++||...+.++.+++.+
T Consensus 603 ~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g-~~vlvlvPt~~La~Q~~~~~~~ 674 (1151)
T 2eyq_A 603 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH-KQVAVLVPTTLLAQQHYDNFRD 674 (1151)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTT-CEEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhC-CeEEEEechHHHHHHHHHHHHH
Confidence 579999999999886 23 689999999999998766665555544 4999999999999999888865
No 58
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=97.94 E-value=2.7e-05 Score=87.06 Aligned_cols=69 Identities=22% Similarity=0.170 Sum_probs=53.8
Q ss_pred CCCCHHHHHHHHHhhcC--CcEEEEcCCCChHhHHHH-HHHHHHHHc-CCCcEEEEcCcHHHHHHHHHHHHhc
Q 001054 389 PELNASQVFAVKSVLQR--PISLIQGPPGTGKTVTSA-AIVYHMAKQ-GQGQVLVCAPSNVAVDQLAEKISAT 457 (1171)
Q Consensus 389 ~~LNesQ~~AV~~aL~~--~lsLIqGPPGTGKTtTla-~iI~~Llk~-~~~rILV~ApSN~AVD~L~eRL~~~ 457 (1171)
..+++-|.+|+..++.. .-++|++|.|||||.+.. .++..+... ...++|+++||...|.++.+.+...
T Consensus 113 ~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l 185 (300)
T 3fmo_B 113 NRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQM 185 (300)
T ss_dssp CSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHH
Confidence 46899999999999975 678999999999998744 333333322 2237999999999999998877654
No 59
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=97.92 E-value=2.4e-05 Score=94.18 Aligned_cols=69 Identities=20% Similarity=0.307 Sum_probs=54.9
Q ss_pred CCCCCHHHHHHHHHhh--cCCcEEEEcCCCChHhHHHHHHH-HHHHHcC-----CCcEEEEcCcHHHHHHHHHHHHh
Q 001054 388 LPELNASQVFAVKSVL--QRPISLIQGPPGTGKTVTSAAIV-YHMAKQG-----QGQVLVCAPSNVAVDQLAEKISA 456 (1171)
Q Consensus 388 l~~LNesQ~~AV~~aL--~~~lsLIqGPPGTGKTtTla~iI-~~Llk~~-----~~rILV~ApSN~AVD~L~eRL~~ 456 (1171)
...|++.|.+||..++ ...-+||.+|.|||||.+....+ ..+.+.. ..++||++||...+.++.+++.+
T Consensus 92 ~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~ 168 (563)
T 3i5x_A 92 FPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKK 168 (563)
T ss_dssp CSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHH
Confidence 3478999999999998 45678999999999998755544 4444432 23899999999999999998865
No 60
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=97.91 E-value=1.1e-05 Score=100.10 Aligned_cols=75 Identities=25% Similarity=0.297 Sum_probs=59.7
Q ss_pred CCCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHh---cCCeEEEe
Q 001054 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISA---TGLKVVRL 464 (1171)
Q Consensus 389 ~~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~---~glkVVRl 464 (1171)
..|++.|.+|+..++.+..++|.||.|+|||+++...+...+..+ .+|++++|+...+.++.+++.. .++++..+
T Consensus 24 ~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~ 101 (702)
T 2p6r_A 24 EELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKG-GKSLYVVPLRALAGEKYESFKKWEKIGLRIGIS 101 (702)
T ss_dssp -CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTT-CCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEE
T ss_pred CCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-CcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 478999999999988888999999999999998866555444443 5999999999999999999843 24454443
No 61
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=97.89 E-value=2.8e-05 Score=94.31 Aligned_cols=68 Identities=21% Similarity=0.335 Sum_probs=54.4
Q ss_pred CCCCHHHHHHHHHhh--cCCcEEEEcCCCChHhHHHHHHHH-HHHHcC-----CCcEEEEcCcHHHHHHHHHHHHh
Q 001054 389 PELNASQVFAVKSVL--QRPISLIQGPPGTGKTVTSAAIVY-HMAKQG-----QGQVLVCAPSNVAVDQLAEKISA 456 (1171)
Q Consensus 389 ~~LNesQ~~AV~~aL--~~~lsLIqGPPGTGKTtTla~iI~-~Llk~~-----~~rILV~ApSN~AVD~L~eRL~~ 456 (1171)
..|++.|.+||..++ ...-++|.+|.|||||.+....+. .+.+.. ..++||++||...+.++.+++.+
T Consensus 42 ~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~ 117 (579)
T 3sqw_A 42 PGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKK 117 (579)
T ss_dssp SSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHH
Confidence 468999999999998 456789999999999987555444 344332 23899999999999999988765
No 62
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=97.89 E-value=4.7e-06 Score=99.76 Aligned_cols=70 Identities=21% Similarity=0.200 Sum_probs=57.1
Q ss_pred CCCCCHHHHHHHHHhhcC--CcEEEEcCCCChHhHHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHhc
Q 001054 388 LPELNASQVFAVKSVLQR--PISLIQGPPGTGKTVTSAAIVYHMAKQ--GQGQVLVCAPSNVAVDQLAEKISAT 457 (1171)
Q Consensus 388 l~~LNesQ~~AV~~aL~~--~lsLIqGPPGTGKTtTla~iI~~Llk~--~~~rILV~ApSN~AVD~L~eRL~~~ 457 (1171)
...+++.|++|+..++.. ..+||.+|.|||||.+....+...+.. ...++|+++|++..++++.+++.+.
T Consensus 139 ~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~ 212 (508)
T 3fho_A 139 XXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEM 212 (508)
T ss_dssp CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHh
Confidence 346889999999999986 789999999999999866555444333 2348999999999999999998765
No 63
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=97.88 E-value=8.6e-06 Score=101.50 Aligned_cols=76 Identities=25% Similarity=0.383 Sum_probs=59.6
Q ss_pred CCCCCHHHHHHHHH-hhcCCcEEEEcCCCChHhHHHHHH-HHHHHHcCCCcEEEEcCcHHHHHHHHHHHHh---cCCeEE
Q 001054 388 LPELNASQVFAVKS-VLQRPISLIQGPPGTGKTVTSAAI-VYHMAKQGQGQVLVCAPSNVAVDQLAEKISA---TGLKVV 462 (1171)
Q Consensus 388 l~~LNesQ~~AV~~-aL~~~lsLIqGPPGTGKTtTla~i-I~~Llk~~~~rILV~ApSN~AVD~L~eRL~~---~glkVV 462 (1171)
...|++.|.+|+.. ++.+..++|.||.|||||+++... +..+...+ .+|++++|+..++.++.+++.+ .++++.
T Consensus 21 ~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~-~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~ 99 (720)
T 2zj8_A 21 IESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQG-GKAVYIVPLKALAEEKFQEFQDWEKIGLRVA 99 (720)
T ss_dssp CCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHC-SEEEEECSSGGGHHHHHHHTGGGGGGTCCEE
T ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCC-CEEEEEcCcHHHHHHHHHHHHHHHhcCCEEE
Confidence 34799999999998 667888999999999999987444 44444344 5999999999999999999853 355554
Q ss_pred Ee
Q 001054 463 RL 464 (1171)
Q Consensus 463 Rl 464 (1171)
.+
T Consensus 100 ~~ 101 (720)
T 2zj8_A 100 MA 101 (720)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 64
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=97.87 E-value=1.3e-05 Score=103.04 Aligned_cols=77 Identities=21% Similarity=0.248 Sum_probs=62.4
Q ss_pred CCCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHcC----CCcEEEEcCcHHHHHHHHHHHHhc----CCe
Q 001054 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQG----QGQVLVCAPSNVAVDQLAEKISAT----GLK 460 (1171)
Q Consensus 389 ~~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~~----~~rILV~ApSN~AVD~L~eRL~~~----glk 460 (1171)
..|.+.|.+||..++...-.+|.+|.|+|||.+....+..++... ..++||++||...+.++.+.+.+. +++
T Consensus 247 ~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 326 (936)
T 4a2w_A 247 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYS 326 (936)
T ss_dssp -CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCce
Confidence 468999999999999888899999999999998777776655442 568999999999999988887664 666
Q ss_pred EEEec
Q 001054 461 VVRLC 465 (1171)
Q Consensus 461 VVRlg 465 (1171)
+..+.
T Consensus 327 v~~~~ 331 (936)
T 4a2w_A 327 VQGIS 331 (936)
T ss_dssp EEEEC
T ss_pred EEEEE
Confidence 66553
No 65
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=97.86 E-value=2.8e-05 Score=101.37 Aligned_cols=67 Identities=21% Similarity=0.276 Sum_probs=57.4
Q ss_pred CCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhc
Q 001054 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT 457 (1171)
Q Consensus 390 ~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~~ 457 (1171)
++++.|.+|+..++...-+||++|.|||||.+....+..++.. ..++||++||...+.++.+++.+.
T Consensus 78 ~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~-~~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 78 DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK-GKKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTT-TCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhc-CCeEEEEechHHHHHHHHHHHHHh
Confidence 5889999999999988888999999999999665555555543 459999999999999999999883
No 66
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=97.85 E-value=3.2e-05 Score=91.23 Aligned_cols=68 Identities=21% Similarity=0.139 Sum_probs=53.3
Q ss_pred CCCCHHHHHHHHHhhcC--CcEEEEcCCCChHhHHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHh
Q 001054 389 PELNASQVFAVKSVLQR--PISLIQGPPGTGKTVTSAAIVYHMAKQ--GQGQVLVCAPSNVAVDQLAEKISA 456 (1171)
Q Consensus 389 ~~LNesQ~~AV~~aL~~--~lsLIqGPPGTGKTtTla~iI~~Llk~--~~~rILV~ApSN~AVD~L~eRL~~ 456 (1171)
..+++.|.+|+..++.. ..+||.||.|||||.+....+...+.. ...++|+++||...+.++.+++.+
T Consensus 113 ~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~ 184 (479)
T 3fmp_B 113 NRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQ 184 (479)
T ss_dssp CSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHH
Confidence 46889999999999975 789999999999998754444332222 223899999999999999777655
No 67
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=97.84 E-value=6e-05 Score=98.33 Aligned_cols=71 Identities=18% Similarity=0.143 Sum_probs=61.3
Q ss_pred CCCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhcCCe
Q 001054 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLK 460 (1171)
Q Consensus 389 ~~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~~glk 460 (1171)
..|++.|++||..++...-+||.||.|+|||.+....+...+..+ .++|+++||...+.++.+++.+...+
T Consensus 183 f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g-~rvlvl~PtraLa~Q~~~~l~~~~~~ 253 (1108)
T 3l9o_A 183 FTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNK-QRVIYTSPIKALSNQKYRELLAEFGD 253 (1108)
T ss_dssp SCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHHTSS
T ss_pred CCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcC-CeEEEEcCcHHHHHHHHHHHHHHhCC
Confidence 369999999999998888899999999999998877777666655 49999999999999999999875443
No 68
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=97.81 E-value=5.3e-05 Score=97.89 Aligned_cols=74 Identities=18% Similarity=0.173 Sum_probs=61.8
Q ss_pred CCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhc--CCeEEEe
Q 001054 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT--GLKVVRL 464 (1171)
Q Consensus 390 ~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~~--glkVVRl 464 (1171)
+|++.|.+||..++...-++|.+|.|+|||.+....+..+++.+ .++||++|+...+.++.+++.+. ++++..+
T Consensus 39 ~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g-~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l 114 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNM-TKTIYTSPIKALSNQKFRDFKETFDDVNIGLI 114 (997)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTT-CEEEEEESCGGGHHHHHHHHHTTC--CCEEEE
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 68999999999999888899999999999998777666666554 48999999999999999999875 3444444
No 69
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=97.71 E-value=8.7e-05 Score=96.01 Aligned_cols=67 Identities=19% Similarity=0.216 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhc
Q 001054 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT 457 (1171)
Q Consensus 390 ~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~~ 457 (1171)
+|++.|++||..++...-+||.+|.|+|||.+....+...+..+ .++|+++||...+.+..+++.+.
T Consensus 86 ~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g-~rvL~l~PtkaLa~Q~~~~l~~~ 152 (1010)
T 2xgj_A 86 TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNK-QRVIYTSPIKALSNQKYRELLAE 152 (1010)
T ss_dssp CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccC-CeEEEECChHHHHHHHHHHHHHH
Confidence 59999999999998888899999999999998766666666554 59999999999999999988764
No 70
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=97.63 E-value=9.4e-05 Score=77.09 Aligned_cols=64 Identities=17% Similarity=0.190 Sum_probs=53.5
Q ss_pred CHHHHHHHHHhhc--CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHH
Q 001054 392 NASQVFAVKSVLQ--RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKIS 455 (1171)
Q Consensus 392 NesQ~~AV~~aL~--~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~ 455 (1171)
+..|..|+..++. .++.+|+|..||+||+..++-+..+.+....+|.++||+.++...+.+.+.
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~s~~~l~~~~~ 101 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMNMKQDER 101 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTHHHHHHSCTTT
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchHHHHHHHhhcC
Confidence 4689999998876 679999999999999996666666666666699999999999998877543
No 71
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=97.63 E-value=5.8e-05 Score=97.29 Aligned_cols=72 Identities=24% Similarity=0.309 Sum_probs=57.5
Q ss_pred CCCCHHHHHHHHHhhcC--CcEEEEcCCCChHhHHHHHHHHHHHHcC-CCcEEEEcCcHHHHHHHHHHHHh-cCCeE
Q 001054 389 PELNASQVFAVKSVLQR--PISLIQGPPGTGKTVTSAAIVYHMAKQG-QGQVLVCAPSNVAVDQLAEKISA-TGLKV 461 (1171)
Q Consensus 389 ~~LNesQ~~AV~~aL~~--~lsLIqGPPGTGKTtTla~iI~~Llk~~-~~rILV~ApSN~AVD~L~eRL~~-~glkV 461 (1171)
.+|.+.|++||..++.. .-.||.++.|+|||.++..++..++..+ ..++||++|+ ..+.+..+.+.+ .++++
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v 227 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRF 227 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCC
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCE
Confidence 47899999999998873 4678999999999999999998887764 3589999999 777777776643 44443
No 72
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=97.62 E-value=0.00014 Score=87.40 Aligned_cols=72 Identities=19% Similarity=0.308 Sum_probs=58.4
Q ss_pred CCCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhcCCeEEEe
Q 001054 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRL 464 (1171)
Q Consensus 389 ~~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~~glkVVRl 464 (1171)
..|.+.|.+||..++...-++|.+|.|+|||.+.. +..+.. ..++||++|+...+.+..+++.+.++.+..+
T Consensus 24 ~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~--lp~l~~--~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l 95 (523)
T 1oyw_A 24 QQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQ--IPALLL--NGLTVVVSPLISLMKDQVDQLQANGVAAACL 95 (523)
T ss_dssp SSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHH--HHHHHS--SSEEEEECSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHH--HHHHHh--CCCEEEECChHHHHHHHHHHHHHcCCcEEEE
Confidence 46788999999999988889999999999996433 222222 3589999999999999999999888776555
No 73
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=97.59 E-value=0.00011 Score=95.66 Aligned_cols=65 Identities=28% Similarity=0.283 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhc
Q 001054 391 LNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT 457 (1171)
Q Consensus 391 LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~~ 457 (1171)
+ +-|.+|+..++...-++|.+|.|||||..+.-++..+... ..++|+++||...+.++.+++.+.
T Consensus 58 p-~iQ~~ai~~il~g~dvlv~apTGSGKTl~~lp~l~~~~~~-~~~~lil~PtreLa~Q~~~~l~~l 122 (1054)
T 1gku_B 58 R-AIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALK-GKRCYVIFPTSLLVIQAAETIRKY 122 (1054)
T ss_dssp C-HHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHHHTT-SCCEEEEESCHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHHhhc-CCeEEEEeccHHHHHHHHHHHHHH
Confidence 7 8999999999988889999999999998555555555443 459999999999999999988753
No 74
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=97.57 E-value=0.00019 Score=97.36 Aligned_cols=69 Identities=17% Similarity=0.315 Sum_probs=56.2
Q ss_pred CCCCCHHHHHHHHHhhc-CCcEEEEcCCCChHhHHHHHHH-HHHHHcCCCcEEEEcCcHHHHHHHHHHHHh
Q 001054 388 LPELNASQVFAVKSVLQ-RPISLIQGPPGTGKTVTSAAIV-YHMAKQGQGQVLVCAPSNVAVDQLAEKISA 456 (1171)
Q Consensus 388 l~~LNesQ~~AV~~aL~-~~lsLIqGPPGTGKTtTla~iI-~~Llk~~~~rILV~ApSN~AVD~L~eRL~~ 456 (1171)
+..||+-|.+|+..++. +.-++|.+|.|+|||.+....| ..|.+.+..++++++|+...|.+..+.+.+
T Consensus 924 f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~ 994 (1724)
T 4f92_B 924 FPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYE 994 (1724)
T ss_dssp CSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHH
Confidence 56799999999999986 5678999999999999875544 445555666999999999999988776643
No 75
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=97.55 E-value=0.0001 Score=87.34 Aligned_cols=141 Identities=18% Similarity=0.223 Sum_probs=91.0
Q ss_pred CCCCHHHHHHHHHhhc----CCcEEEEcCCCChHhHHHHHHHHHHHHcC-CCcEEEEcCcHHHHHHHHHHHHhcC--CeE
Q 001054 389 PELNASQVFAVKSVLQ----RPISLIQGPPGTGKTVTSAAIVYHMAKQG-QGQVLVCAPSNVAVDQLAEKISATG--LKV 461 (1171)
Q Consensus 389 ~~LNesQ~~AV~~aL~----~~lsLIqGPPGTGKTtTla~iI~~Llk~~-~~rILV~ApSN~AVD~L~eRL~~~g--lkV 461 (1171)
..|.+.|++||..++. ..-.+|..+.|+|||.++..++..+...+ ..++||++|+. .+.+..+.+.+.. +++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~-l~~qw~~e~~~~~~~~~v 114 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLS-VLKNWEEELSKFAPHLRF 114 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECST-THHHHHHHHHHHCTTSCE
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccHH-HHHHHHHHHHHHCCCceE
Confidence 3689999999986642 34567888999999999988888877653 45899999965 5677777776642 233
Q ss_pred EEeccccccccCCcchhhhHHHHHhhccchhHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHHHHHHhccccccccccc
Q 001054 462 VRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVG 541 (1171)
Q Consensus 462 VRlg~~sre~i~~~v~~l~L~~~i~~l~~~~~~~L~kL~~lk~e~~els~~dek~y~~l~r~~e~~iL~~a~VI~~T~~~ 541 (1171)
..+...... ..+..++|+++|...
T Consensus 115 ~~~~g~~~~--------------------------------------------------------~~~~~~~ivi~t~~~ 138 (500)
T 1z63_A 115 AVFHEDRSK--------------------------------------------------------IKLEDYDIILTTYAV 138 (500)
T ss_dssp EECSSSTTS--------------------------------------------------------CCGGGSSEEEEEHHH
T ss_pred EEEecCchh--------------------------------------------------------ccccCCcEEEeeHHH
Confidence 222110000 012345677776554
Q ss_pred cCCC-CcccCCCCEEEEEcCCCCCcccc-----cccccccCceEEEeCCccC
Q 001054 542 AGDP-RLANFRFRQVLIDESTQATEPEC-----LIPLVLGAKQVVLVGDHCQ 587 (1171)
Q Consensus 542 a~~~-~L~~~kFD~VIIDEASQasEpe~-----LIpL~~~~kkLILVGD~~Q 587 (1171)
.... .+....|++||||||..+..... +..+ ....+++|-|=|-|
T Consensus 139 l~~~~~l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l-~~~~~l~LTaTP~~ 189 (500)
T 1z63_A 139 LLRDTRLKEVEWKYIVIDEAQNIKNPQTKIFKAVKEL-KSKYRIALTGTPIE 189 (500)
T ss_dssp HTTCHHHHTCCEEEEEEETGGGGSCTTSHHHHHHHTS-CEEEEEEECSSCST
T ss_pred HhccchhcCCCcCEEEEeCccccCCHhHHHHHHHHhh-ccCcEEEEecCCCC
Confidence 4332 24556899999999988755331 1111 23457888888766
No 76
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=97.53 E-value=0.00013 Score=89.11 Aligned_cols=73 Identities=15% Similarity=0.223 Sum_probs=59.4
Q ss_pred CCCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhcCCeEEEec
Q 001054 389 PELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLC 465 (1171)
Q Consensus 389 ~~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~~glkVVRlg 465 (1171)
..|.+.|.+||..++...-+||.+|.|+|||.+....+ +. ...++||++|+...+.+..+++.+.++++..+.
T Consensus 43 ~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpa--l~--~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~ 115 (591)
T 2v1x_A 43 EKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPA--LC--SDGFTLVICPLISLMEDQLMVLKQLGISATMLN 115 (591)
T ss_dssp CSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHH--HT--SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECC
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHH--HH--cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEe
Confidence 46788999999999998889999999999997543222 22 245999999999999999999998888766553
No 77
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=97.35 E-value=0.00021 Score=86.45 Aligned_cols=73 Identities=18% Similarity=0.236 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHh---h-cCCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhc----CCeE
Q 001054 390 ELNASQVFAVKSV---L-QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT----GLKV 461 (1171)
Q Consensus 390 ~LNesQ~~AV~~a---L-~~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~~----glkV 461 (1171)
++-+.|.+++..+ + .....+|++|.|||||.....-+ +. . ..+|++++||+..++++.+.+... ++++
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~--l~-~-~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~ 78 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVS--LE-V-KPKVLFVVRTHNEFYPIYRDLTKIREKRNITF 78 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHH--HH-H-CSEEEEEESSGGGHHHHHHHHTTCCCSSCCCE
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHH--Hh-C-CCeEEEEcCCHHHHHHHHHHHHHHhhhcCccE
Confidence 3557898865543 3 35678999999999976543322 22 2 359999999999999998877765 5666
Q ss_pred EEecc
Q 001054 462 VRLCA 466 (1171)
Q Consensus 462 VRlg~ 466 (1171)
+-+..
T Consensus 79 ~~l~g 83 (551)
T 3crv_A 79 SFLVG 83 (551)
T ss_dssp EECCC
T ss_pred EEEcc
Confidence 65544
No 78
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.32 E-value=5.8e-05 Score=81.38 Aligned_cols=38 Identities=26% Similarity=0.277 Sum_probs=32.0
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCc
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPS 443 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApS 443 (1171)
..+.+|.|+||+||||.+..++..+...+. +|+++.|.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~-kVli~~~~ 49 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADV-KYLVFKPK 49 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTC-CEEEEEEC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCC-EEEEEEec
Confidence 457899999999999999999988877665 88888653
No 79
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.27 E-value=0.00026 Score=85.59 Aligned_cols=74 Identities=27% Similarity=0.316 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHh---h-cCCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhcCCeEEEec
Q 001054 390 ELNASQVFAVKSV---L-QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLC 465 (1171)
Q Consensus 390 ~LNesQ~~AV~~a---L-~~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~~glkVVRlg 465 (1171)
++.+.|++++..+ + .....+|++|.|||||.+. ++-.+.. ..+|++++||+..++++.+.+...+++++.+.
T Consensus 7 ~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~--l~~~~~~--~~~~~~~~~t~~l~~q~~~~~~~l~~~~~~l~ 82 (540)
T 2vl7_A 7 QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFV--EVLGMQL--KKKVLIFTRTHSQLDSIYKNAKLLGLKTGFLI 82 (540)
T ss_dssp --CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHH--HHHHHHH--TCEEEEEESCHHHHHHHHHHHGGGTCCEEEC-
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHH--HHHHHhC--CCcEEEEcCCHHHHHHHHHHHHhcCCcEEEec
Confidence 4567898876543 2 3568899999999999643 3333322 35999999999999999999988877777665
Q ss_pred cc
Q 001054 466 AK 467 (1171)
Q Consensus 466 ~~ 467 (1171)
.+
T Consensus 83 gr 84 (540)
T 2vl7_A 83 GK 84 (540)
T ss_dssp --
T ss_pred CC
Confidence 43
No 80
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=97.21 E-value=0.0012 Score=81.40 Aligned_cols=66 Identities=23% Similarity=0.311 Sum_probs=50.9
Q ss_pred CCCHHHHHHHHHhhc---------CCcEEEEcCCCChHhHHHHHHHHHHHHcC------CCcEEEEcCcHHHHHHHHHHH
Q 001054 390 ELNASQVFAVKSVLQ---------RPISLIQGPPGTGKTVTSAAIVYHMAKQG------QGQVLVCAPSNVAVDQLAEKI 454 (1171)
Q Consensus 390 ~LNesQ~~AV~~aL~---------~~lsLIqGPPGTGKTtTla~iI~~Llk~~------~~rILV~ApSN~AVD~L~eRL 454 (1171)
.|-+.|++||+.++. ..-.||.-+.|+|||.+++.++..+++.. ..++||++|+ ..+.+..+.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 578999999998742 23367888999999999999999888763 2469999998 4566666655
Q ss_pred Hh
Q 001054 455 SA 456 (1171)
Q Consensus 455 ~~ 456 (1171)
.+
T Consensus 134 ~~ 135 (644)
T 1z3i_X 134 GK 135 (644)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 81
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.20 E-value=0.00023 Score=74.91 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=32.4
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCc
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPS 443 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApS 443 (1171)
.+.+|.|+.|+||||.+..++..+...+. +|+++.|+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~-kV~v~k~~ 45 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQ-KIQVFKPE 45 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCC-EEEEEEec
Confidence 47899999999999999999988877665 99999876
No 82
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=97.15 E-value=0.00028 Score=83.49 Aligned_cols=52 Identities=27% Similarity=0.433 Sum_probs=43.1
Q ss_pred cCCcEEEEcCCCChHhHH-HHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHh
Q 001054 404 QRPISLIQGPPGTGKTVT-SAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISA 456 (1171)
Q Consensus 404 ~~~lsLIqGPPGTGKTtT-la~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~ 456 (1171)
.+..++|.+|.|||||++ +..++..+.+.+ .++|+++||...+.++.+++..
T Consensus 20 ~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~-~~~lvl~Ptr~La~Q~~~~l~g 72 (459)
T 2z83_A 20 KRQMTVLDLHPGSGKTRKILPQIIKDAIQQR-LRTAVLAPTRVVAAEMAEALRG 72 (459)
T ss_dssp TTCEEEECCCTTSCTTTTHHHHHHHHHHHTT-CCEEEEECSHHHHHHHHHHTTT
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHHhCC-CcEEEECchHHHHHHHHHHhcC
Confidence 367889999999999998 566666665544 5999999999999999999863
No 83
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.15 E-value=0.00066 Score=72.65 Aligned_cols=66 Identities=17% Similarity=0.355 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHH-HcC---CCcEEEEcCcHHHHHHHHHHHHh
Q 001054 391 LNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMA-KQG---QGQVLVCAPSNVAVDQLAEKISA 456 (1171)
Q Consensus 391 LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Ll-k~~---~~rILV~ApSN~AVD~L~eRL~~ 456 (1171)
+.+.|.+++..+.....++|.||.|||||+++...+.... ..+ ..++++++|+...+.++.+++..
T Consensus 62 ~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~ 131 (235)
T 3llm_A 62 VKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAF 131 (235)
T ss_dssp GGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHH
Confidence 5678999999999899999999999999998776665433 322 23899999999999999998865
No 84
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.13 E-value=0.0005 Score=73.58 Aligned_cols=38 Identities=24% Similarity=0.156 Sum_probs=32.1
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSN 444 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN 444 (1171)
.+.+|.|+.|+||||.+..++..+...+. +||++.|..
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~-kVli~k~~~ 66 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFAKQ-HAIVFKPCI 66 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTC-CEEEEECC-
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCC-EEEEEEecc
Confidence 47889999999999999999988877765 899988754
No 85
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=97.09 E-value=0.00039 Score=86.28 Aligned_cols=55 Identities=24% Similarity=0.407 Sum_probs=44.3
Q ss_pred cCCcEEEEcCCCChHhHHH-HHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhcCC
Q 001054 404 QRPISLIQGPPGTGKTVTS-AAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGL 459 (1171)
Q Consensus 404 ~~~lsLIqGPPGTGKTtTl-a~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~~gl 459 (1171)
.....||+||.|||||.+. ..++..+... ..++||++||...|.++.+++...++
T Consensus 240 ~g~dvlv~apTGSGKTl~~ll~il~~l~~~-~~~~lilaPTr~La~Q~~~~l~~~~i 295 (673)
T 2wv9_A 240 KRQLTVLDLHPGAGKTRRILPQIIKDAIQK-RLRTAVLAPTRVVAAEMAEALRGLPV 295 (673)
T ss_dssp TTCEEEECCCTTTTTTTTHHHHHHHHHHHT-TCCEEEEESSHHHHHHHHHHTTTSCC
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHhC-CCcEEEEccHHHHHHHHHHHHhcCCe
Confidence 5778899999999999984 5555555554 45999999999999999999876543
No 86
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=97.07 E-value=0.00074 Score=83.77 Aligned_cols=59 Identities=24% Similarity=0.379 Sum_probs=44.9
Q ss_pred HhhcCCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhcCCeEEEe
Q 001054 401 SVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRL 464 (1171)
Q Consensus 401 ~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~~glkVVRl 464 (1171)
.++.+..++|.||.|||||+.+. ..+... .+.++++||..+|.++.+++.+.++++.-+
T Consensus 151 r~l~rk~vlv~apTGSGKT~~al---~~l~~~--~~gl~l~PtR~LA~Qi~~~l~~~g~~v~ll 209 (677)
T 3rc3_A 151 RAMQRKIIFHSGPTNSGKTYHAI---QKYFSA--KSGVYCGPLKLLAHEIFEKSNAAGVPCDLV 209 (677)
T ss_dssp HTSCCEEEEEECCTTSSHHHHHH---HHHHHS--SSEEEEESSHHHHHHHHHHHHHTTCCEEEE
T ss_pred HhcCCCEEEEEcCCCCCHHHHHH---HHHHhc--CCeEEEeCHHHHHHHHHHHHHhcCCcEEEE
Confidence 34556789999999999999333 333333 256999999999999999999887765544
No 87
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=97.00 E-value=0.0008 Score=91.29 Aligned_cols=76 Identities=22% Similarity=0.347 Sum_probs=57.9
Q ss_pred CCCCCCHHHHHHHHHhhc-CCcEEEEcCCCChHhHHHHHHHH-HHHHc---------CCCcEEEEcCcHHHHHHHHHHHH
Q 001054 387 GLPELNASQVFAVKSVLQ-RPISLIQGPPGTGKTVTSAAIVY-HMAKQ---------GQGQVLVCAPSNVAVDQLAEKIS 455 (1171)
Q Consensus 387 ~l~~LNesQ~~AV~~aL~-~~lsLIqGPPGTGKTtTla~iI~-~Llk~---------~~~rILV~ApSN~AVD~L~eRL~ 455 (1171)
+...||+-|.+++..++. +..+||.+|-|+|||.+....+. .|.+. ...+||+++|+..-|.++.+.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 456899999999999986 56789999999999998755444 44332 23589999999999988876654
Q ss_pred h----cCCeEE
Q 001054 456 A----TGLKVV 462 (1171)
Q Consensus 456 ~----~glkVV 462 (1171)
+ .|+++.
T Consensus 156 ~~~~~~gi~V~ 166 (1724)
T 4f92_B 156 KRLATYGITVA 166 (1724)
T ss_dssp HHHTTTTCCEE
T ss_pred HHHhhCCCEEE
Confidence 3 455543
No 88
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=96.99 E-value=0.00083 Score=79.17 Aligned_cols=58 Identities=21% Similarity=0.391 Sum_probs=45.7
Q ss_pred HHHHhhc-CCcEEEEcCCCChHhHH-HHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHh
Q 001054 398 AVKSVLQ-RPISLIQGPPGTGKTVT-SAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISA 456 (1171)
Q Consensus 398 AV~~aL~-~~lsLIqGPPGTGKTtT-la~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~ 456 (1171)
++..++. +++++|.||.|||||.. +..++..++..+ .++|+++||...++++.+++..
T Consensus 11 ~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~-~~~lvl~Ptr~La~Q~~~~l~g 70 (451)
T 2jlq_A 11 VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRR-LRTLILAPTRVVAAEMEEALRG 70 (451)
T ss_dssp CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTT-CCEEEEESSHHHHHHHHHHTTT
T ss_pred HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcC-CcEEEECCCHHHHHHHHHHhcC
Confidence 3444554 56779999999999995 666666666654 4999999999999999998853
No 89
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=96.98 E-value=0.00062 Score=83.67 Aligned_cols=75 Identities=17% Similarity=0.271 Sum_probs=52.8
Q ss_pred CHHHHHHHHHh---h-cCCcEEEEcCCCChHhHHHH-HHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhc----CCeEE
Q 001054 392 NASQVFAVKSV---L-QRPISLIQGPPGTGKTVTSA-AIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT----GLKVV 462 (1171)
Q Consensus 392 NesQ~~AV~~a---L-~~~lsLIqGPPGTGKTtTla-~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~~----glkVV 462 (1171)
-+.|++.+..+ + .....+|.+|.|||||.... -++.++...+ .+|+++++|+.-+.++.+-+... .++++
T Consensus 5 R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~-~kvli~t~T~~l~~Qi~~el~~l~~~~~~~~~ 83 (620)
T 4a15_A 5 RQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERK-LKVLYLVRTNSQEEQVIKELRSLSSTMKIRAI 83 (620)
T ss_dssp CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHT-CEEEEEESSHHHHHHHHHHHHHHHHHSCCCEE
T ss_pred CHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcC-CeEEEECCCHHHHHHHHHHHHHHhhccCeEEE
Confidence 46787776543 3 46789999999999997643 3444444434 49999999999999887766542 46666
Q ss_pred Eeccc
Q 001054 463 RLCAK 467 (1171)
Q Consensus 463 Rlg~~ 467 (1171)
-+..+
T Consensus 84 ~l~gr 88 (620)
T 4a15_A 84 PMQGR 88 (620)
T ss_dssp ECCCH
T ss_pred EEECC
Confidence 66543
No 90
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=96.93 E-value=0.0012 Score=77.37 Aligned_cols=50 Identities=24% Similarity=0.434 Sum_probs=41.0
Q ss_pred CCcEEEEcCCCChHhHHH-HHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTS-AAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKIS 455 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTl-a~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~ 455 (1171)
....||+||.|||||.+. ..++..+++.+ .++|+++||...++++.+.+.
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~g-~~~lvl~Pt~~La~Q~~~~~~ 52 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKKR-LRTVILAPTRVVASEMYEALR 52 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHTT-CCEEEEESSHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhCC-CCEEEECcHHHHHHHHHHHhC
Confidence 356899999999999986 45555566554 499999999999999998876
No 91
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=96.91 E-value=0.00043 Score=85.06 Aligned_cols=58 Identities=22% Similarity=0.367 Sum_probs=47.1
Q ss_pred HHHHhhcCCcEEEEcCCCChHhHH-HHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHh
Q 001054 398 AVKSVLQRPISLIQGPPGTGKTVT-SAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISA 456 (1171)
Q Consensus 398 AV~~aL~~~lsLIqGPPGTGKTtT-la~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~ 456 (1171)
++..++....++|.+|.|||||.+ +..++..+...+ .++|+++||...|+++.+++..
T Consensus 179 ~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~-~~vLvl~PtreLa~Qi~~~l~~ 237 (618)
T 2whx_A 179 DEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRR-LRTLILAPTRVVAAEMEEALRG 237 (618)
T ss_dssp CGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTT-CCEEEEESSHHHHHHHHHHTTT
T ss_pred CHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCC-CeEEEEcChHHHHHHHHHHhcC
Confidence 355566678899999999999998 466666666644 5999999999999999998864
No 92
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.0011 Score=83.84 Aligned_cols=158 Identities=14% Similarity=0.226 Sum_probs=93.6
Q ss_pred CCCCHHHHHHHHHhh----cCCcEEEEcCCCChHhHHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHhc--CCe
Q 001054 389 PELNASQVFAVKSVL----QRPISLIQGPPGTGKTVTSAAIVYHMAKQ--GQGQVLVCAPSNVAVDQLAEKISAT--GLK 460 (1171)
Q Consensus 389 ~~LNesQ~~AV~~aL----~~~lsLIqGPPGTGKTtTla~iI~~Llk~--~~~rILV~ApSN~AVD~L~eRL~~~--glk 460 (1171)
..|-+.|+++|..++ ...-.||.-+.|+|||.+++.++..+... ...++||++|+. .+.+..+.+.+. +++
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~s-ll~qW~~E~~~~~p~~~ 313 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLS-TMPAWLDTFEKWAPDLN 313 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTT-THHHHHHHHHHHSTTCC
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECch-HHHHHHHHHHHHCCCce
Confidence 368899999998665 35567889999999999998888777543 456899999954 566777766654 344
Q ss_pred EEEeccccccccCCcchhhhHHHHHhhccchhHHHHHHHHhhhhhhccCCchHHHHHHHHHHHHHHHHHhcccccccccc
Q 001054 461 VVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCV 540 (1171)
Q Consensus 461 VVRlg~~sre~i~~~v~~l~L~~~i~~l~~~~~~~L~kL~~lk~e~~els~~dek~y~~l~r~~e~~iL~~a~VI~~T~~ 540 (1171)
++.+....+. ...+..+...... .........++|+++|..
T Consensus 314 v~~~~g~~~~----------------------r~~~~~~~~~~~~-----------------~~~~~~~~~~dvvitTy~ 354 (800)
T 3mwy_W 314 CICYMGNQKS----------------------RDTIREYEFYTNP-----------------RAKGKKTMKFNVLLTTYE 354 (800)
T ss_dssp EEECCCSSHH----------------------HHHHHHHHSCSCC----------------------CCCCCSEEEECTT
T ss_pred EEEEeCCHHH----------------------HHHHHHHHhhccc-----------------cccccccccCCEEEecHH
Confidence 4443221110 0000000000000 000011235677777765
Q ss_pred ccCCC--CcccCCCCEEEEEcCCCCCcccc-----cccccccCceEEEeCCccC
Q 001054 541 GAGDP--RLANFRFRQVLIDESTQATEPEC-----LIPLVLGAKQVVLVGDHCQ 587 (1171)
Q Consensus 541 ~a~~~--~L~~~kFD~VIIDEASQasEpe~-----LIpL~~~~kkLILVGD~~Q 587 (1171)
.+... .+....|++||||||..+..... +..+ ....+++|-|=|-|
T Consensus 355 ~l~~~~~~l~~~~w~~vIvDEaH~lkn~~s~~~~~l~~l-~~~~rl~LTgTPiq 407 (800)
T 3mwy_W 355 YILKDRAELGSIKWQFMAVDEAHRLKNAESSLYESLNSF-KVANRMLITGTPLQ 407 (800)
T ss_dssp HHHHTHHHHHTSEEEEEEETTGGGGCCSSSHHHHHHTTS-EEEEEEEECSCCCS
T ss_pred HHHhhHHHHhcCCcceeehhhhhhhcCchhHHHHHHHHh-hhccEEEeeCCcCC
Confidence 44322 24556899999999988743221 1111 23467889998876
No 93
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=96.86 E-value=0.00067 Score=87.79 Aligned_cols=67 Identities=19% Similarity=0.172 Sum_probs=53.6
Q ss_pred CCCHHHHHHHHHhhc--------------CCcEEEEcCCCChHhHHHHHHHHHHHHc-C-CCcEEEEcCcHHHHHHHHHH
Q 001054 390 ELNASQVFAVKSVLQ--------------RPISLIQGPPGTGKTVTSAAIVYHMAKQ-G-QGQVLVCAPSNVAVDQLAEK 453 (1171)
Q Consensus 390 ~LNesQ~~AV~~aL~--------------~~lsLIqGPPGTGKTtTla~iI~~Llk~-~-~~rILV~ApSN~AVD~L~eR 453 (1171)
.+.+.|..||..++. ..-.+|+.+.|||||.++..++ .++.. + ..+|||++|++..++++.+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~-~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAA-RLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHH-HHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHH-HHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 578999999998875 1357999999999999987666 44432 2 25899999999999999888
Q ss_pred HHhc
Q 001054 454 ISAT 457 (1171)
Q Consensus 454 L~~~ 457 (1171)
+...
T Consensus 350 f~~f 353 (1038)
T 2w00_A 350 YQRF 353 (1038)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 7664
No 94
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.82 E-value=0.0025 Score=80.36 Aligned_cols=64 Identities=23% Similarity=0.273 Sum_probs=48.3
Q ss_pred HHHHHHHHHhhc-CCcEEEEcCCCChHhHHHHHHHHHHHH-cC-CCcEEEEcCcHHHHHHHHHHHHh
Q 001054 393 ASQVFAVKSVLQ-RPISLIQGPPGTGKTVTSAAIVYHMAK-QG-QGQVLVCAPSNVAVDQLAEKISA 456 (1171)
Q Consensus 393 esQ~~AV~~aL~-~~lsLIqGPPGTGKTtTla~iI~~Llk-~~-~~rILV~ApSN~AVD~L~eRL~~ 456 (1171)
..|+++|..++. +..++|.||.|||||+.+..++..... .+ ..+|++++|+..++.++.+++..
T Consensus 96 ~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~ 162 (773)
T 2xau_A 96 HAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAE 162 (773)
T ss_dssp GGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHH
Confidence 468888877776 568999999999999966555432211 11 34699999999999999988854
No 95
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=96.82 E-value=0.0015 Score=76.86 Aligned_cols=55 Identities=24% Similarity=0.335 Sum_probs=43.5
Q ss_pred hcCCcEEEEcCCCChHhHHH-HHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhcC
Q 001054 403 LQRPISLIQGPPGTGKTVTS-AAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATG 458 (1171)
Q Consensus 403 L~~~lsLIqGPPGTGKTtTl-a~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~~g 458 (1171)
+.....||+||.|||||.+. ..++..+.+.+ .++|+++||...|.++.+++...+
T Consensus 6 ~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~-~~~lil~Ptr~La~Q~~~~l~~~~ 61 (440)
T 1yks_A 6 KKGMTTVLDFHPGAGKTRRFLPQILAECARRR-LRTLVLAPTRVVLSEMKEAFHGLD 61 (440)
T ss_dssp STTCEEEECCCTTSSTTTTHHHHHHHHHHHTT-CCEEEEESSHHHHHHHHHHTTTSC
T ss_pred hCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcC-CeEEEEcchHHHHHHHHHHHhcCC
Confidence 34667899999999999985 44555455544 599999999999999999987553
No 96
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.81 E-value=0.0037 Score=73.55 Aligned_cols=54 Identities=33% Similarity=0.475 Sum_probs=36.5
Q ss_pred cEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEE-EcCcH--HHHHHHHHHHHhcCCeE
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLV-CAPSN--VAVDQLAEKISATGLKV 461 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV-~ApSN--~AVD~L~eRL~~~glkV 461 (1171)
+.+|.|++|+|||||+..++..+.+.+. +|++ .+.+. .|.+++...-...++.+
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~~G~-kVllv~~D~~r~~a~eqL~~~~~~~gv~~ 155 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKKRGY-KVGLVAADVYRPAAYDQLLQLGNQIGVQV 155 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHTTC-CEEEEEECCSCHHHHHHHHHHHHTTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCC-eEEEEecCccchhHHHHHHHHHHhcCCce
Confidence 5788999999999999999998887765 6655 44433 44454444333334433
No 97
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.76 E-value=0.0047 Score=72.86 Aligned_cols=54 Identities=33% Similarity=0.428 Sum_probs=37.5
Q ss_pred cEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEE-EcCcH--HHHHHHHHHHHhcCCeE
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLV-CAPSN--VAVDQLAEKISATGLKV 461 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV-~ApSN--~AVD~L~eRL~~~glkV 461 (1171)
+.+|.|++|+|||||+..++.+|.+.+. +|++ .+.+. .|+++|...-...++.+
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~G~-kVllv~~D~~R~aa~eqL~~~~~~~gvpv 158 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKRGY-KVGVVCSDTWRPGAYHQLRQLLDRYHIEV 158 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTC-CEEEEECCCSSTHHHHHHHHHHGGGTCEE
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHCCC-eEEEEeCCCcchhHHHHHHHHHHhcCCcE
Confidence 6789999999999999999998887665 6655 44433 44555554444444444
No 98
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.61 E-value=0.0028 Score=64.63 Aligned_cols=49 Identities=22% Similarity=0.154 Sum_probs=36.1
Q ss_pred CHHHHHHHHHhhc---------CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEE
Q 001054 392 NASQVFAVKSVLQ---------RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (1171)
Q Consensus 392 NesQ~~AV~~aL~---------~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ 440 (1171)
++.|++|+..+.. ....+|.|||||||||++..++..+.......++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~ 73 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF 73 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 6789888887642 357899999999999999988877763333244443
No 99
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.53 E-value=0.0015 Score=68.88 Aligned_cols=38 Identities=24% Similarity=0.198 Sum_probs=32.1
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCc
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPS 443 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApS 443 (1171)
..+.+|.||.|+|||+-+...+......+ .+|+++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~-~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQ-YKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTT-CCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcC-CeEEEEccc
Confidence 45889999999999999999998887766 489988764
No 100
>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.25 PDB: 3k70_C*
Probab=96.50 E-value=0.0016 Score=85.22 Aligned_cols=78 Identities=13% Similarity=0.056 Sum_probs=58.7
Q ss_pred CCCeEEecccCcccCccCeEEEeccccCCc----CCcCC---------------CCCcCceeeechhhccceEEEeccc-
Q 001054 740 YKEIEVASVDSFQGREKDYIILSCVRSNEH----QGIGF---------------LNDPRRLNVALTRARYGIVILGNPK- 799 (1171)
Q Consensus 740 ~~~V~V~TVdsfQG~E~DvVILS~VRSn~~----~~iGF---------------L~D~RRLNVALTRAK~~LIIVGn~~- 799 (1171)
...|.|+|+|.++|.|||+|+|..+....- ...+| ..++|++||||||||+.|+|.....
T Consensus 656 ~~~V~l~Tlh~aKgLef~vVfllGlnEG~fP~~~~~~~~dll~~~l~~~dr~~~eEERrLfYvAltrA~~~L~LSy~~~~ 735 (1122)
T 1w36_C 656 AGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRS 735 (1122)
T ss_dssp SSSCEEECCCTTCCCCEEEEEEECCBTTTSSCCCCCCSSCHHHHSCCTTCCCHHHHHHHHHHHHHHHEEEEEEEEEECBC
T ss_pred CCeEEEeccccccCCCcCEEEEeCCCcccCCCCCCCCcHHHhhcccCCCchhhhHHHHHHHHHHHHhhcCeEEEEEeCCc
Confidence 568999999999999999999988765421 11122 1246679999999999999986542
Q ss_pred -----ccccCchHHHHHHHHHhc
Q 001054 800 -----VLSKQPLWNGLLTHYKEH 817 (1171)
Q Consensus 800 -----~Ls~~~~W~~Ll~~~ke~ 817 (1171)
....+.+..+|.+++...
T Consensus 736 ~~~g~~~~PSrfL~eL~~~l~~~ 758 (1122)
T 1w36_C 736 IQDNSERFPSVLVQELIDYIGQS 758 (1122)
T ss_dssp SSSCCBCCBCHHHHHHHHHHHTT
T ss_pred CCCCCcCCCCHHHHHHHHHHHHh
Confidence 234578888888888653
No 101
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=96.46 E-value=0.0018 Score=80.05 Aligned_cols=49 Identities=31% Similarity=0.403 Sum_probs=38.7
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHh
Q 001054 404 QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISA 456 (1171)
Q Consensus 404 ~~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~ 456 (1171)
.+...+|+||.|||||..+... +++.+ .++|+++||...|.++.+++.+
T Consensus 231 ~~~~vlv~ApTGSGKT~a~~l~---ll~~g-~~vLVl~PTReLA~Qia~~l~~ 279 (666)
T 3o8b_A 231 SFQVAHLHAPTGSGKSTKVPAA---YAAQG-YKVLVLNPSVAATLGFGAYMSK 279 (666)
T ss_dssp SCEEEEEECCTTSCTTTHHHHH---HHHTT-CCEEEEESCHHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCchhHHHHHHHH---HHHCC-CeEEEEcchHHHHHHHHHHHHH
Confidence 3567899999999999755433 33333 4999999999999999998865
No 102
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.40 E-value=0.011 Score=66.46 Aligned_cols=54 Identities=26% Similarity=0.406 Sum_probs=36.4
Q ss_pred cEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEc-C--cHHHHHHHHHHHHhcCCeE
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA-P--SNVAVDQLAEKISATGLKV 461 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~A-p--SN~AVD~L~eRL~~~glkV 461 (1171)
+.+|.|++|+||||++..++..+...+. +|++++ . ...+++++...+...++.+
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l~~~g~-kV~lv~~D~~r~~a~eqL~~~~~~~gl~~ 162 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMFVDEGK-SVVLAAADTFRAAAIEQLKIWGERVGATV 162 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTC-CEEEEEECTTCHHHHHHHHHHHHHHTCEE
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHhcCC-EEEEEccccccHHHHHHHHHHHHHcCCcE
Confidence 5789999999999999999988876654 776654 2 2344455544443344443
No 103
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.37 E-value=0.0029 Score=67.81 Aligned_cols=39 Identities=23% Similarity=0.134 Sum_probs=31.6
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSN 444 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN 444 (1171)
..+.+|.|+-|+||||.+..++..+...+. +++++.|.-
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~g~-kvli~kp~~ 66 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYAKQ-KVVVFKPAI 66 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTC-CEEEEEEC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCC-ceEEEEecc
Confidence 457899999999999988888877766654 899998854
No 104
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.32 E-value=0.018 Score=60.77 Aligned_cols=57 Identities=21% Similarity=0.214 Sum_probs=42.6
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHH----HHHHHHHHHHhcCCeEEEec
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNV----AVDQLAEKISATGLKVVRLC 465 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~----AVD~L~eRL~~~glkVVRlg 465 (1171)
+++.+|.+++|+||||.+..++...+..+. +|+++-+-.. .-.++.++| ++.+.+.+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~-rV~~vQF~Kg~~~~gE~~~l~~L---~v~~~~~g 88 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGK-NVGVVQFIKGTWPNGERNLLEPH---GVEFQVMA 88 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTC-CEEEEESSCCSSCCHHHHHHGGG---TCEEEECC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEEEEeeCCCCCccHHHHHHhC---CcEEEEcc
Confidence 678999999999999999999998888876 9999976542 112334444 36666665
No 105
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.95 E-value=0.01 Score=61.29 Aligned_cols=34 Identities=32% Similarity=0.368 Sum_probs=26.5
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEE
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ 440 (1171)
..++|.||||||||+++..+...+...+. +++++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~-~~~~~ 88 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNV-SSLIV 88 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTC-CEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCC-eEEEE
Confidence 57899999999999998888877765443 55544
No 106
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.88 E-value=0.0062 Score=65.88 Aligned_cols=38 Identities=24% Similarity=0.218 Sum_probs=31.7
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCc
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPS 443 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApS 443 (1171)
..+.++.|+.|+||||.+..++......+. +|+++.|.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~-kvli~kp~ 56 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQY-KCLVIKYA 56 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTC-CEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCC-eEEEEeec
Confidence 457899999999999999999887766554 89988864
No 107
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=95.78 E-value=0.037 Score=69.63 Aligned_cols=72 Identities=22% Similarity=0.146 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHh----cCCeEEEe
Q 001054 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISA----TGLKVVRL 464 (1171)
Q Consensus 390 ~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~----~glkVVRl 464 (1171)
...+-|..++-.++... +.+..-|||||.+.+.-++. .......++|+|||...|.+..+-+.. .++++.-+
T Consensus 83 ~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l-~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i 158 (844)
T 1tf5_A 83 FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYL-NALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLN 158 (844)
T ss_dssp CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHH-HHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEC
T ss_pred CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHH-HHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEE
Confidence 56899999999888766 89999999999866544432 122334899999999998887776543 35554433
No 108
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.59 E-value=0.027 Score=58.77 Aligned_cols=49 Identities=18% Similarity=0.124 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHhhc---CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEE
Q 001054 391 LNASQVFAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (1171)
Q Consensus 391 LNesQ~~AV~~aL~---~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ 440 (1171)
.|....+++...+. ....+|.||||||||+++..++..+...+. +++.+
T Consensus 35 ~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~-~~~~~ 86 (242)
T 3bos_A 35 GNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELER-RSFYI 86 (242)
T ss_dssp CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC-eEEEE
Confidence 45666666666554 457899999999999999888877765432 44443
No 109
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=95.43 E-value=0.035 Score=69.84 Aligned_cols=64 Identities=20% Similarity=0.134 Sum_probs=47.6
Q ss_pred CCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHh
Q 001054 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISA 456 (1171)
Q Consensus 390 ~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~ 456 (1171)
...+-|..++-.++... +.+..-|||||.+.+.-++..+ ....+++|+|||...|.+..+.+..
T Consensus 74 ~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~-l~g~~vlVltPTreLA~Q~~e~~~~ 137 (853)
T 2fsf_A 74 RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNA-LTGKGVHVVTVNDYLAQRDAENNRP 137 (853)
T ss_dssp CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHH-TTSSCCEEEESSHHHHHHHHHHHHH
T ss_pred CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHH-HcCCcEEEEcCCHHHHHHHHHHHHH
Confidence 45789999998877655 8899999999976654443222 2334899999999988877776543
No 110
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.29 E-value=0.019 Score=60.72 Aligned_cols=53 Identities=28% Similarity=0.439 Sum_probs=40.4
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhcCC
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGL 459 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~~gl 459 (1171)
..+++|.|+||+|||+++..++..+++.+. ++++++.... .+++.+++...+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~-~v~~~~~e~~-~~~~~~~~~~~g~ 75 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGE-PGIYVALEEH-PVQVRQNMAQFGW 75 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTC-CEEEEESSSC-HHHHHHHHHTTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCC-eEEEEEccCC-HHHHHHHHHHcCC
Confidence 568999999999999999999888877654 7777775443 4677777765443
No 111
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=95.21 E-value=0.049 Score=68.79 Aligned_cols=72 Identities=19% Similarity=0.179 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHh----cCCeEEEe
Q 001054 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISA----TGLKVVRL 464 (1171)
Q Consensus 390 ~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~----~glkVVRl 464 (1171)
...+-|..++-.++... +.+..-|||||.+.+.-++... .....++|+|||...|.+..+-+.. .++++.-+
T Consensus 111 rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~a-L~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i 186 (922)
T 1nkt_A 111 RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNA-LAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVI 186 (922)
T ss_dssp CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHH-TTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEC
T ss_pred CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHH-HhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEE
Confidence 45789999998877655 8999999999976554443212 2334899999999988877776543 35554433
No 112
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.17 E-value=0.019 Score=57.22 Aligned_cols=39 Identities=23% Similarity=0.404 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhc---CCcEEEEcCCCChHhHHHHHHHHHHHH
Q 001054 393 ASQVFAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHMAK 431 (1171)
Q Consensus 393 esQ~~AV~~aL~---~~lsLIqGPPGTGKTtTla~iI~~Llk 431 (1171)
+.+.+.+...+. ....+|.||||||||+++..++..+..
T Consensus 28 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 28 DEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp HHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 445555555553 356899999999999999888877655
No 113
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.15 E-value=0.014 Score=66.10 Aligned_cols=28 Identities=7% Similarity=0.067 Sum_probs=23.9
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHc
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQ 432 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~ 432 (1171)
.+..+|.||||||||+++..++..|...
T Consensus 45 ~~~lli~GpPGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3467899999999999999999888654
No 114
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=95.12 E-value=0.064 Score=67.75 Aligned_cols=64 Identities=17% Similarity=0.089 Sum_probs=48.5
Q ss_pred CCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHh
Q 001054 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISA 456 (1171)
Q Consensus 390 ~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~ 456 (1171)
...+-|..++-.++... +.+...|||||.+.+.-++..+ ....+++|+|||...|.+..+-+..
T Consensus 79 ~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~a-L~G~qv~VvTPTreLA~Qdae~m~~ 142 (997)
T 2ipc_A 79 RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNA-LTGKGVHVVTVNDYLARRDAEWMGP 142 (997)
T ss_dssp CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHH-TTCSCCEEEESSHHHHHHHHHHHHH
T ss_pred CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHH-HhCCCEEEEeCCHHHHHHHHHHHHH
Confidence 45889999998888766 8899999999986654443222 2334899999999988887776544
No 115
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.93 E-value=0.024 Score=59.98 Aligned_cols=53 Identities=23% Similarity=0.322 Sum_probs=40.3
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhcC
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATG 458 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~~g 458 (1171)
..+++|.|+||+|||+.+..++...+.....++++++.... .+++.+++...+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~-~~~~~~~~~~~~ 82 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER-ARDLRREMASFG 82 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHHTTT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC-HHHHHHHHHHcC
Confidence 56899999999999999999887765554458888876543 456777776543
No 116
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.93 E-value=0.021 Score=59.26 Aligned_cols=38 Identities=26% Similarity=0.331 Sum_probs=32.1
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCc
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPS 443 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApS 443 (1171)
..+.+|.|++|+||||++..++..+...+. +++++.+.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~-~v~~~~~~ 40 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKK-KVAVFKPK 40 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTC-EEEEEEEC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEEEeec
Confidence 457899999999999999999888877654 88888776
No 117
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.78 E-value=0.056 Score=60.21 Aligned_cols=35 Identities=31% Similarity=0.300 Sum_probs=27.7
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEc
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~A 441 (1171)
...+|.||||||||+++..++..+...+ .+++.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~-~~~~~i~ 72 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRG-YRVIYSS 72 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTT-CCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCC-CEEEEEE
Confidence 3689999999999999988888776653 3666654
No 118
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.69 E-value=0.024 Score=56.60 Aligned_cols=38 Identities=18% Similarity=0.437 Sum_probs=27.6
Q ss_pred HHHHHHHHhhc---CCcEEEEcCCCChHhHHHHHHHHHHHH
Q 001054 394 SQVFAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHMAK 431 (1171)
Q Consensus 394 sQ~~AV~~aL~---~~lsLIqGPPGTGKTtTla~iI~~Llk 431 (1171)
.+.+.+...+. ....+|.||||||||+++..++..+..
T Consensus 29 ~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 29 TEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp HHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34444444443 346799999999999999888877654
No 119
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.62 E-value=0.032 Score=57.00 Aligned_cols=39 Identities=36% Similarity=0.588 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhcC---CcEEEEcCCCChHhHHHHHHHHHHHH
Q 001054 393 ASQVFAVKSVLQR---PISLIQGPPGTGKTVTSAAIVYHMAK 431 (1171)
Q Consensus 393 esQ~~AV~~aL~~---~lsLIqGPPGTGKTtTla~iI~~Llk 431 (1171)
+...+.+...+.. +..+|.||||||||+++..++..+..
T Consensus 23 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~ 64 (226)
T 2chg_A 23 DEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG 64 (226)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4556666666542 35899999999999998888776643
No 120
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.50 E-value=0.036 Score=55.46 Aligned_cols=41 Identities=22% Similarity=0.274 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHH
Q 001054 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAK 431 (1171)
Q Consensus 390 ~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk 431 (1171)
..|.+...+++.+ .....+|.||+|||||+++..+...+..
T Consensus 22 g~n~~~~~~l~~~-~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 22 TENAELVYVLRHK-HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCTHHHHHHCCCC-CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CccHHHHHHHHhc-CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5677777776665 5678899999999999998888876654
No 121
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.38 E-value=0.047 Score=56.80 Aligned_cols=51 Identities=20% Similarity=0.323 Sum_probs=37.2
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhc
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT 457 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~~ 457 (1171)
..+++|.||+|+||||++..++..+...+. +|+++.... ..+++.+++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~-~v~~~~~~~-~~~~~~~~~~~~ 73 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGD-PCIYVTTEE-SRDSIIRQAKQF 73 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTC-CEEEEESSS-CHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCC-eEEEEEccc-CHHHHHHHHHHh
Confidence 457899999999999999999877766554 787776543 244555665543
No 122
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=94.34 E-value=0.021 Score=75.00 Aligned_cols=76 Identities=11% Similarity=0.052 Sum_probs=55.7
Q ss_pred CCCeEEecccCcccCccCeEEEeccccCCc----CCcCCC------------------------CCcCceeeechhhccc
Q 001054 740 YKEIEVASVDSFQGREKDYIILSCVRSNEH----QGIGFL------------------------NDPRRLNVALTRARYG 791 (1171)
Q Consensus 740 ~~~V~V~TVdsfQG~E~DvVILS~VRSn~~----~~iGFL------------------------~D~RRLNVALTRAK~~ 791 (1171)
.+.|.|+|+|.++|.||++|||..+....- ..-+|+ .+++++|||||||++.
T Consensus 585 ~d~V~i~t~~~argl~f~~V~l~G~~eg~~P~~~~~~~~l~~~~R~~l~~~g~~l~~~~~~~~~eer~l~y~altrA~~~ 664 (1166)
T 3u4q_B 585 LDQVFVGNMDLSRMYGTSCTFVLGANDGVLPARPDENGVLSDDDREWLKTIGVELSSGGRERLLDEHFLIYMAFSSPSDR 664 (1166)
T ss_dssp SSCEEEEESSSCCCSSCSEEEEECCBTTTTTTCCCCCSSSCHHHHHHHHHHTCCCCCCSSHHHHHHHHHHHHHHTSCSSE
T ss_pred CCEEEEecCcccccCCCCEEEEeCCCcCCCCCCCCCCCCCCHHHHHHHHhCCCcCCCchHHHHHHhHHHHHHHHhcccCe
Confidence 467999999999999999999988765421 112332 2346699999999999
Q ss_pred eEEEecc-----cccccCchHHHHHHHHH
Q 001054 792 IVILGNP-----KVLSKQPLWNGLLTHYK 815 (1171)
Q Consensus 792 LIIVGn~-----~~Ls~~~~W~~Ll~~~k 815 (1171)
|+|.... ..+..+++..+|..++.
T Consensus 665 L~lsy~~~~~~~~~~~pS~~l~el~~~~~ 693 (1166)
T 3u4q_B 665 LYVSYPIADAEGKTLLPSMIVKRLEELFP 693 (1166)
T ss_dssp EEEEEESSCSSSCCCCBCHHHHHHHHHST
T ss_pred EEEEEeccCCCCCccCCCHHHHHHHHHcc
Confidence 9998542 33455778888777653
No 123
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.11 E-value=0.039 Score=59.98 Aligned_cols=23 Identities=43% Similarity=0.677 Sum_probs=18.9
Q ss_pred CcEEEEcCCCChHhHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYH 428 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~ 428 (1171)
...||.||||||||+++..++..
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999988776544
No 124
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.08 E-value=0.059 Score=60.38 Aligned_cols=35 Identities=23% Similarity=0.267 Sum_probs=28.5
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHHH-HcCCCcEEEEc
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHMA-KQGQGQVLVCA 441 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~Ll-k~~~~rILV~A 441 (1171)
...+|+||||||||+++..+...+. ..+. +|+++.
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~-~v~~~~ 188 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGV-STTLLH 188 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCC-CEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCC-cEEEEE
Confidence 5689999999999999999998888 6554 666554
No 125
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.06 E-value=0.049 Score=56.15 Aligned_cols=38 Identities=21% Similarity=0.249 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhc-C---CcEEEEcCCCChHhHHHHHHHHHHH
Q 001054 393 ASQVFAVKSVLQ-R---PISLIQGPPGTGKTVTSAAIVYHMA 430 (1171)
Q Consensus 393 esQ~~AV~~aL~-~---~lsLIqGPPGTGKTtTla~iI~~Ll 430 (1171)
+...+.+...+. . ...+|.||||||||+++..++..+.
T Consensus 29 ~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 29 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp HHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 455555655554 2 3689999999999999888876654
No 126
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.92 E-value=0.05 Score=61.13 Aligned_cols=41 Identities=22% Similarity=0.372 Sum_probs=30.7
Q ss_pred CHHHHHHHHHhhc-------CCcEEEEcCCCChHhHHHHHHHHHHHHc
Q 001054 392 NASQVFAVKSVLQ-------RPISLIQGPPGTGKTVTSAAIVYHMAKQ 432 (1171)
Q Consensus 392 NesQ~~AV~~aL~-------~~lsLIqGPPGTGKTtTla~iI~~Llk~ 432 (1171)
.+.+.+.+...+. ....+|.||||||||+++..++..+...
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~ 71 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEAR 71 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 3566666666551 3568999999999999998888776543
No 127
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=93.86 E-value=0.046 Score=59.91 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=19.2
Q ss_pred CcEEEEcCCCChHhHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYH 428 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~ 428 (1171)
..+||.||||||||+++..+...
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999988777653
No 128
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.86 E-value=0.031 Score=65.67 Aligned_cols=22 Identities=45% Similarity=0.751 Sum_probs=19.2
Q ss_pred EEEEcCCCChHhHHHHHHHHHH
Q 001054 408 SLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 408 sLIqGPPGTGKTtTla~iI~~L 429 (1171)
+|+.||||||||.++.+++..+
T Consensus 209 iLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp EEEESCTTTTHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999988877654
No 129
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.74 E-value=0.039 Score=58.78 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.3
Q ss_pred cEEEEcCCCChHhHHHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
..||.||||||||+++..++..+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999998887765
No 130
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.74 E-value=0.051 Score=53.58 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=18.7
Q ss_pred CCcEEEEcCCCChHhHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVY 427 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~ 427 (1171)
...++|+|+||||||+++..+..
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 55689999999999998766543
No 131
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.63 E-value=0.048 Score=59.61 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=20.7
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
...+||.||||||||+++..+...+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999988777654
No 132
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.54 E-value=0.069 Score=59.88 Aligned_cols=40 Identities=28% Similarity=0.375 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhc-------CCcEEEEcCCCChHhHHHHHHHHHHHHc
Q 001054 393 ASQVFAVKSVLQ-------RPISLIQGPPGTGKTVTSAAIVYHMAKQ 432 (1171)
Q Consensus 393 esQ~~AV~~aL~-------~~lsLIqGPPGTGKTtTla~iI~~Llk~ 432 (1171)
+.+.+.+...+. ...++|.||||||||+++..++..+...
T Consensus 26 ~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 26 EDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp HHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 456666666554 3578999999999999998888776554
No 133
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=93.53 E-value=0.068 Score=57.05 Aligned_cols=24 Identities=38% Similarity=0.639 Sum_probs=19.5
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
...||.||||||||+++..+...+
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 347899999999999888776543
No 134
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=93.52 E-value=0.11 Score=64.49 Aligned_cols=64 Identities=28% Similarity=0.384 Sum_probs=52.9
Q ss_pred CCCHHHHHHHHHhhc---CC--cEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhc
Q 001054 390 ELNASQVFAVKSVLQ---RP--ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT 457 (1171)
Q Consensus 390 ~LNesQ~~AV~~aL~---~~--lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~~ 457 (1171)
.++..|..|+..++. .+ ..++.|.+|||||.|++.++..+ ..++||+|++...|.+|.+.|...
T Consensus 8 ~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~~~~----~~~~lvv~~~~~~A~ql~~el~~~ 76 (664)
T 1c4o_A 8 SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEAL----GRPALVLAPNKILAAQLAAEFREL 76 (664)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH----TCCEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHHHHHHh----CCCEEEEecCHHHHHHHHHHHHHH
Confidence 678899988886543 23 45789999999999999888654 348999999999999999999876
No 135
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.42 E-value=0.07 Score=59.73 Aligned_cols=22 Identities=41% Similarity=0.658 Sum_probs=18.6
Q ss_pred cEEEEcCCCChHhHHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYH 428 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~ 428 (1171)
-+||.||||||||+++..+...
T Consensus 53 ~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 53 GILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp EEEEECSSSSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4799999999999988777654
No 136
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.40 E-value=0.059 Score=61.25 Aligned_cols=25 Identities=28% Similarity=0.565 Sum_probs=20.3
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
...+||.||||||||+++..+...+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3568999999999999877776554
No 137
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.39 E-value=0.058 Score=60.85 Aligned_cols=25 Identities=36% Similarity=0.422 Sum_probs=21.2
Q ss_pred cEEEEcCCCChHhHHHHHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHMAK 431 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~Llk 431 (1171)
.++|.||||||||+++..++..+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhh
Confidence 7899999999999999887766543
No 138
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=93.26 E-value=0.038 Score=58.30 Aligned_cols=23 Identities=39% Similarity=0.704 Sum_probs=19.4
Q ss_pred cEEEEcCCCChHhHHHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
+.||+|+||||||+.++..+..+
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 68999999999999987766544
No 139
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.26 E-value=0.089 Score=59.37 Aligned_cols=27 Identities=33% Similarity=0.366 Sum_probs=22.8
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHHHHc
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHMAKQ 432 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~Llk~ 432 (1171)
..++|.||||||||+++..++..+...
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~~~~~~ 72 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFNEIEEV 72 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 468999999999999998888776554
No 140
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.25 E-value=0.073 Score=59.70 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=40.2
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHh
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISA 456 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~ 456 (1171)
..+++|.|+||+|||+.+..++..++.++ .+||+++.- ...++|.+|+..
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g-~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND-DVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT-CEEEEEESS-SCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC-CeEEEEECC-CCHHHHHHHHHH
Confidence 56899999999999999999998887765 589888865 445677777654
No 141
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.24 E-value=0.25 Score=55.49 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=20.2
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
.-.||.||||||||+++..++..+
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 357999999999999988877654
No 142
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.18 E-value=0.075 Score=57.32 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=27.3
Q ss_pred EEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEE
Q 001054 408 SLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (1171)
Q Consensus 408 sLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ 440 (1171)
.++.|+||+||||++..++..+.+.+. +|+++
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~~~G~-~V~v~ 40 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQLRQGV-RVMAG 40 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCC-CEEEE
Confidence 678999999999999999999988876 66544
No 143
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.02 E-value=0.045 Score=60.70 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=19.7
Q ss_pred cEEEEcCCCChHhHHHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
..||+||||||||+++..++..+
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999988887665
No 144
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.98 E-value=0.051 Score=59.72 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=22.0
Q ss_pred cEEEEcCCCChHhHHHHHHHHHHHHc
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHMAKQ 432 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~Llk~ 432 (1171)
.+||.||||||||+++..+...+...
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~~~ 94 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLHRL 94 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 58999999999999988888776553
No 145
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=92.86 E-value=0.033 Score=60.08 Aligned_cols=23 Identities=43% Similarity=0.660 Sum_probs=19.0
Q ss_pred cEEEEcCCCChHhHHHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
-+||.||||||||+++..+...+
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 36899999999999988776543
No 146
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.77 E-value=0.19 Score=59.05 Aligned_cols=36 Identities=22% Similarity=0.167 Sum_probs=27.5
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHHHHcC-CCcEEEEc
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHMAKQG-QGQVLVCA 441 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~Llk~~-~~rILV~A 441 (1171)
+..+|.||||||||+++..+...+.... ..+++.+.
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 3689999999999999988887776652 34666554
No 147
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.72 E-value=0.13 Score=61.56 Aligned_cols=56 Identities=21% Similarity=0.367 Sum_probs=39.4
Q ss_pred cEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcC---cHHHHHHHHHHHHhcCCeEEE
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP---SNVAVDQLAEKISATGLKVVR 463 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~Ap---SN~AVD~L~eRL~~~glkVVR 463 (1171)
+.+|.|+||+||||++..++.++.+.+. +|++++. ...|++.+.......++.++.
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~-kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~ 161 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGW-KTCLICADTFRAGAFDQLKQNATKARIPFYG 161 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEEECCSSSHHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCC-eEEEEeccccchhHHHHHHHHhhccCceEEc
Confidence 4678899999999999999999887765 6666654 445666665444444555543
No 148
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=92.67 E-value=0.08 Score=58.12 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=20.6
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHMA 430 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~Ll 430 (1171)
..++|.||||||||+++..+...+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHc
Confidence 3689999999999998887776554
No 149
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=92.62 E-value=0.048 Score=53.74 Aligned_cols=22 Identities=9% Similarity=0.126 Sum_probs=17.7
Q ss_pred CCcEEEEcCCCChHhHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIV 426 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI 426 (1171)
...++|+|+||||||+++..+.
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGC
T ss_pred CCcEEEECCCCccHHHHHHHHH
Confidence 4568999999999998765543
No 150
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=92.62 E-value=0.086 Score=57.95 Aligned_cols=39 Identities=31% Similarity=0.502 Sum_probs=29.2
Q ss_pred CHHHHHHHHHhhcC---CcEEEEcCCCChHhHHHHHHHHHHH
Q 001054 392 NASQVFAVKSVLQR---PISLIQGPPGTGKTVTSAAIVYHMA 430 (1171)
Q Consensus 392 NesQ~~AV~~aL~~---~lsLIqGPPGTGKTtTla~iI~~Ll 430 (1171)
.+...+.+...+.. +.++|.||||||||+++..++..+.
T Consensus 30 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 30 QEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp CHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 45666666666542 2589999999999999888877664
No 151
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.60 E-value=0.16 Score=56.73 Aligned_cols=55 Identities=29% Similarity=0.453 Sum_probs=37.7
Q ss_pred cEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCc---HHHHHHHHHHHHhcCCeEE
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPS---NVAVDQLAEKISATGLKVV 462 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApS---N~AVD~L~eRL~~~glkVV 462 (1171)
+.+|.|++|+||||++..++..+...+. +|+++..- ..|.+.+.......++.++
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~g~-~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~ 157 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKKGF-KVGLVGADVYRPAALEQLQQLGQQIGVPVY 157 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHTTC-CEEEEECCCSSSHHHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEEEecCCCCHHHHHHHHHHhccCCeEEE
Confidence 5678899999999999999988877654 77776543 3455555443333455443
No 152
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=92.53 E-value=0.092 Score=58.31 Aligned_cols=39 Identities=33% Similarity=0.389 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHhhcC----CcEEEEcCCCChHhHHHHHHHHHH
Q 001054 391 LNASQVFAVKSVLQR----PISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 391 LNesQ~~AV~~aL~~----~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
.++...+.+..++.. .+.|+.||||||||+++..+...+
T Consensus 30 g~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 30 LPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp CCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 346667777776652 356777889999999988776554
No 153
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.52 E-value=0.1 Score=58.81 Aligned_cols=24 Identities=38% Similarity=0.628 Sum_probs=20.9
Q ss_pred cEEEEcCCCChHhHHHHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHMA 430 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~Ll 430 (1171)
.+||.||||||||+++..+...+.
T Consensus 72 ~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999888877663
No 154
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.42 E-value=0.062 Score=63.24 Aligned_cols=22 Identities=45% Similarity=0.756 Sum_probs=18.7
Q ss_pred EEEEcCCCChHhHHHHHHHHHH
Q 001054 408 SLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 408 sLIqGPPGTGKTtTla~iI~~L 429 (1171)
+|+.||||||||.++.+++..+
T Consensus 218 vLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 218 ALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEECcCCCCHHHHHHHHHHHh
Confidence 6999999999999887777554
No 155
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=92.40 E-value=0.1 Score=56.11 Aligned_cols=23 Identities=48% Similarity=0.668 Sum_probs=19.1
Q ss_pred cEEEEcCCCChHhHHHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
-++|.||||||||+++..+...+
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHc
Confidence 47899999999999888776543
No 156
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.39 E-value=0.09 Score=62.96 Aligned_cols=24 Identities=29% Similarity=0.664 Sum_probs=20.5
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
+..||.||||||||+++..++..+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 578999999999999988777654
No 157
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.33 E-value=0.12 Score=58.18 Aligned_cols=38 Identities=32% Similarity=0.514 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhc-CCc--EEEEcCCCChHhHHHHHHHHHHH
Q 001054 393 ASQVFAVKSVLQ-RPI--SLIQGPPGTGKTVTSAAIVYHMA 430 (1171)
Q Consensus 393 esQ~~AV~~aL~-~~l--sLIqGPPGTGKTtTla~iI~~Ll 430 (1171)
+...+.+...+. ..+ +++.||||||||+++..++..+.
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 444455555554 334 89999999999999988877664
No 158
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=92.23 E-value=0.1 Score=58.83 Aligned_cols=24 Identities=38% Similarity=0.635 Sum_probs=20.1
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
..++|.|||||||||++..+...+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 578999999999999887776554
No 159
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=92.19 E-value=0.079 Score=60.82 Aligned_cols=49 Identities=18% Similarity=0.164 Sum_probs=35.4
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKI 454 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL 454 (1171)
..+++|.||||+||||++..++..+...+. +|+++..-...-...++|+
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg-~VlyId~E~s~~~~ra~rl 109 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGG-VAAFIDAEHALDPVYAKNL 109 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTC-CEEEEESSCCCCHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCC-eEEEEecccccchHHHHHc
Confidence 347899999999999999999988777654 7777765443333344444
No 160
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.17 E-value=0.14 Score=56.37 Aligned_cols=50 Identities=14% Similarity=0.171 Sum_probs=36.1
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKIS 455 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~ 455 (1171)
..+++|.|+||+||||++..++..+......+|+++..... ..++..|+.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~-~~~~~~r~~ 84 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDLI 84 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSC-HHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCC-HHHHHHHHH
Confidence 56899999999999999999888776653347887765432 234555543
No 161
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.17 E-value=0.1 Score=57.79 Aligned_cols=24 Identities=42% Similarity=0.600 Sum_probs=19.6
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
..+||.||||||||+++..+...+
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCcCHHHHHHHHHHHh
Confidence 358999999999999887776543
No 162
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=92.10 E-value=0.32 Score=59.22 Aligned_cols=67 Identities=15% Similarity=0.116 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHc-CCCcEEEEcCcHHHHHHHHHHHHh
Q 001054 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ-GQGQVLVCAPSNVAVDQLAEKISA 456 (1171)
Q Consensus 390 ~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~-~~~rILV~ApSN~AVD~L~eRL~~ 456 (1171)
.|++.|+..+..+-.....+|.+|.|+|||++++.++..++.. +..+|+++++|...|..+.+++..
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~ 230 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 6899999988866446788999999999999988776555444 445899999999999888877654
No 163
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.09 E-value=0.082 Score=52.50 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=19.1
Q ss_pred cEEEEcCCCChHhHHHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
+.+|.|+||+||||++..+...+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999887776554
No 164
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.09 E-value=0.072 Score=62.76 Aligned_cols=22 Identities=45% Similarity=0.819 Sum_probs=18.8
Q ss_pred EEEEcCCCChHhHHHHHHHHHH
Q 001054 408 SLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 408 sLIqGPPGTGKTtTla~iI~~L 429 (1171)
+|+.||||||||.++.+++..+
T Consensus 218 vLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 218 VLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 6899999999999988877654
No 165
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=92.05 E-value=0.13 Score=57.51 Aligned_cols=37 Identities=19% Similarity=0.233 Sum_probs=29.2
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEc
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~A 441 (1171)
..+++|.|++|+||||++..++..+......+|++++
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3478899999999999999999888753334777765
No 166
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=92.02 E-value=0.084 Score=58.91 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=24.2
Q ss_pred HHHHHHhh-cCCcEEEEcCCCChHhHHHHHHHHHH
Q 001054 396 VFAVKSVL-QRPISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 396 ~~AV~~aL-~~~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
++++..++ .....||.||||||||+++..+...+
T Consensus 36 ~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 36 INRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp HHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 34443333 36678999999999999887776543
No 167
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.02 E-value=0.074 Score=62.00 Aligned_cols=22 Identities=45% Similarity=0.847 Sum_probs=18.6
Q ss_pred EEEEcCCCChHhHHHHHHHHHH
Q 001054 408 SLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 408 sLIqGPPGTGKTtTla~iI~~L 429 (1171)
+|+.||||||||.++.+++..+
T Consensus 185 vLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp EEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEeCCCCCCHHHHHHHHHHhh
Confidence 6999999999999887776543
No 168
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.01 E-value=0.15 Score=55.70 Aligned_cols=50 Identities=18% Similarity=0.411 Sum_probs=34.9
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcC----------CCcEEEEcCcHHHHHHHHHHHHh
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQG----------QGQVLVCAPSNVAVDQLAEKISA 456 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~----------~~rILV~ApSN~AVD~L~eRL~~ 456 (1171)
..+++|.||||+||||++..++..+. .+ ..+|++++.-... +.+..|+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~-~g~~~~g~~~~~~~~v~~~~~e~~~-~~~~~r~~~ 89 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIA-GGPDLLEVGELPTGPVIYLPAEDPP-TAIHHRLHA 89 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH-TCCCTTCCCCCCCCCEEEEESSSCH-HHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHh-cCCCcCCCccCCCccEEEEECCCCH-HHHHHHHHH
Confidence 57899999999999999998887554 32 3467776654432 455555543
No 169
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=92.00 E-value=0.099 Score=56.41 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=19.9
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
...++|.|+||||||+++..+...+
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhc
Confidence 5678999999999999876665443
No 170
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=91.97 E-value=0.17 Score=51.40 Aligned_cols=31 Identities=23% Similarity=0.457 Sum_probs=23.7
Q ss_pred cEEEEcCCCChHhHHHHHHHHHHHHcCCCcEE
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVL 438 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~Llk~~~~rIL 438 (1171)
+.+|.|++||||||++..+...|...+. .++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~-~v~ 32 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGK-KVI 32 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC--EE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC-eEE
Confidence 4689999999999999888877755544 444
No 171
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.93 E-value=0.1 Score=58.28 Aligned_cols=23 Identities=39% Similarity=0.616 Sum_probs=19.1
Q ss_pred CcEEEEcCCCChHhHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYH 428 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~ 428 (1171)
..+||.||||||||+++..+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999988777543
No 172
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.86 E-value=0.16 Score=52.37 Aligned_cols=38 Identities=18% Similarity=0.148 Sum_probs=29.8
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSN 444 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN 444 (1171)
++..|.|++|+||||++..++..|...+. +|.++....
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~-~v~~ik~~~ 42 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGW-RVGTVKHHG 42 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTC-CEEEEECCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCC-eeeEEEeCC
Confidence 46789999999999999999888776554 666666443
No 173
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.80 E-value=0.15 Score=60.17 Aligned_cols=50 Identities=20% Similarity=0.291 Sum_probs=39.3
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKIS 455 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~ 455 (1171)
..+++|.|+||+|||+++..++..+......+|++++.-... .++..|+.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~-~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSA-QQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCH-HHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH-HHHHHHHH
Confidence 568999999999999999999988876544589998865433 56777754
No 174
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=91.73 E-value=0.13 Score=58.59 Aligned_cols=25 Identities=32% Similarity=0.672 Sum_probs=20.4
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
....||.||||||||+++..+...+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999887776544
No 175
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=91.69 E-value=0.2 Score=59.00 Aligned_cols=54 Identities=24% Similarity=0.412 Sum_probs=37.2
Q ss_pred cEEEEcCCCChHhHHHHHHHHHHHHc-CCCcEEEEcC---cHHHHHHHHHHHHhcCCeE
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHMAKQ-GQGQVLVCAP---SNVAVDQLAEKISATGLKV 461 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~Llk~-~~~rILV~Ap---SN~AVD~L~eRL~~~glkV 461 (1171)
+.+|.|++|+|||||++.++..|.+. +. +||+++- ...|.+.+...-...++.+
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G~-kVllvd~D~~r~~a~~ql~~~~~~~~l~v 159 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKK-KVLVVSADVYRPAAIKQLETLAEQVGVDF 159 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCC-CEEEEECCCSSTTHHHHHHHHHHHHTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEEecCCCCccHHHHHHhhcccCCeeE
Confidence 56678999999999999999999887 55 7766543 2355555543333344444
No 176
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.66 E-value=0.1 Score=58.26 Aligned_cols=37 Identities=41% Similarity=0.581 Sum_probs=27.1
Q ss_pred HHHHHHHHhhcC---CcEEEEcCCCChHhHHHHHHHHHHH
Q 001054 394 SQVFAVKSVLQR---PISLIQGPPGTGKTVTSAAIVYHMA 430 (1171)
Q Consensus 394 sQ~~AV~~aL~~---~lsLIqGPPGTGKTtTla~iI~~Ll 430 (1171)
...+.+...+.. +.++|.||||||||+++..++..+.
T Consensus 44 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 44 HAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp TTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344555555542 3489999999999999888887664
No 177
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=91.63 E-value=0.13 Score=58.45 Aligned_cols=23 Identities=43% Similarity=0.661 Sum_probs=19.2
Q ss_pred CcEEEEcCCCChHhHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYH 428 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~ 428 (1171)
..+||.||||||||+++..++..
T Consensus 118 ~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999988877644
No 178
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=91.59 E-value=0.094 Score=56.88 Aligned_cols=23 Identities=39% Similarity=0.606 Sum_probs=19.3
Q ss_pred CcEEEEcCCCChHhHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYH 428 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~ 428 (1171)
...||.||||||||+++..+...
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 35799999999999998877664
No 179
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=91.59 E-value=0.14 Score=55.98 Aligned_cols=39 Identities=36% Similarity=0.603 Sum_probs=28.6
Q ss_pred CHHHHHHHHHhhcC---CcEEEEcCCCChHhHHHHHHHHHHH
Q 001054 392 NASQVFAVKSVLQR---PISLIQGPPGTGKTVTSAAIVYHMA 430 (1171)
Q Consensus 392 NesQ~~AV~~aL~~---~lsLIqGPPGTGKTtTla~iI~~Ll 430 (1171)
.+...+.+...+.. +.++|.||||||||+++..++..+.
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp CHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhc
Confidence 34555666655542 2489999999999999888887764
No 180
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=91.55 E-value=0.37 Score=59.55 Aligned_cols=64 Identities=22% Similarity=0.295 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHhhc---CC--cEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhc
Q 001054 390 ELNASQVFAVKSVLQ---RP--ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT 457 (1171)
Q Consensus 390 ~LNesQ~~AV~~aL~---~~--lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~~ 457 (1171)
..+..|..|+..++. .+ ..++.|.+|+|||.+++.++..+ ..++||+|++...|.+|.+-|...
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~~~~----~~~~lvv~~~~~~A~~l~~el~~~ 80 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEV----NKPTLVIAHNKTLAGQLYSEFKEF 80 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH----CCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHHHHh----CCCEEEEECCHHHHHHHHHHHHHH
Confidence 567889888886543 23 46789999999999999887654 348999999999999999999876
No 181
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.54 E-value=0.1 Score=58.44 Aligned_cols=48 Identities=29% Similarity=0.367 Sum_probs=31.8
Q ss_pred CHHHHHHHHHhh-c---CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEE
Q 001054 392 NASQVFAVKSVL-Q---RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLV 439 (1171)
Q Consensus 392 NesQ~~AV~~aL-~---~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV 439 (1171)
++...++++.++ . .+..+|.||+||||||++..++..+.......|.+
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~ 70 (354)
T 1sxj_E 19 NEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKI 70 (354)
T ss_dssp CHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC---
T ss_pred CHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEe
Confidence 456666666666 3 13389999999999999888877665443334443
No 182
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.48 E-value=0.16 Score=59.50 Aligned_cols=49 Identities=22% Similarity=0.398 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHhhc--CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEE
Q 001054 391 LNASQVFAVKSVLQ--RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (1171)
Q Consensus 391 LNesQ~~AV~~aL~--~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ 440 (1171)
+...+..+++.++. ..+++|.||.|+||||++..++..+. ....+|++.
T Consensus 151 ~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l~-~~~g~I~~~ 201 (418)
T 1p9r_A 151 MTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELN-SSERNILTV 201 (418)
T ss_dssp CCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHC-CTTSCEEEE
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhcC-CCCCEEEEe
Confidence 56677778877664 45899999999999999998876542 233466654
No 183
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=91.41 E-value=0.15 Score=58.56 Aligned_cols=37 Identities=27% Similarity=0.420 Sum_probs=26.4
Q ss_pred CHHHHHHHHHhh---------------cCCcEEEEcCCCChHhHHHHHHHHH
Q 001054 392 NASQVFAVKSVL---------------QRPISLIQGPPGTGKTVTSAAIVYH 428 (1171)
Q Consensus 392 NesQ~~AV~~aL---------------~~~lsLIqGPPGTGKTtTla~iI~~ 428 (1171)
.+.+++.|...+ ....+||.||||||||+++..+...
T Consensus 120 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 120 QDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 355666666554 1246899999999999988776543
No 184
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.37 E-value=0.099 Score=61.37 Aligned_cols=22 Identities=36% Similarity=0.679 Sum_probs=18.7
Q ss_pred EEEEcCCCChHhHHHHHHHHHH
Q 001054 408 SLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 408 sLIqGPPGTGKTtTla~iI~~L 429 (1171)
+|+.||||||||.++.+++..+
T Consensus 219 vLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 219 VILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp EEEESSTTTTHHHHHHHHHHHH
T ss_pred CceECCCCchHHHHHHHHHHHh
Confidence 6999999999999887777553
No 185
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=91.36 E-value=0.11 Score=57.22 Aligned_cols=24 Identities=38% Similarity=0.598 Sum_probs=20.2
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
..++|.||||||||+++..+...+
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Confidence 568999999999999988776544
No 186
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=91.35 E-value=0.41 Score=55.49 Aligned_cols=67 Identities=15% Similarity=0.116 Sum_probs=54.5
Q ss_pred CCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHc-CCCcEEEEcCcHHHHHHHHHHHHh
Q 001054 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQ-GQGQVLVCAPSNVAVDQLAEKISA 456 (1171)
Q Consensus 390 ~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~-~~~rILV~ApSN~AVD~L~eRL~~ 456 (1171)
.|++.|+..+..+...+..+|..+-+.|||++++.++..++.. +..+|+++|+|...|.++.+++..
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~ 230 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 6899999998865456788999999999999988877664443 445899999999999888777653
No 187
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=91.27 E-value=0.12 Score=54.48 Aligned_cols=39 Identities=18% Similarity=0.173 Sum_probs=27.7
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcC-----CCcEEEEcCc
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQG-----QGQVLVCAPS 443 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~-----~~rILV~ApS 443 (1171)
..+++|.||||+|||+++..++...+... ..+++.+...
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 46899999999999999998887543311 2356555443
No 188
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=91.25 E-value=0.1 Score=52.47 Aligned_cols=24 Identities=13% Similarity=0.266 Sum_probs=19.8
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
.+.+|.|+|||||||++..+...|
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999887776544
No 189
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.16 E-value=0.12 Score=60.78 Aligned_cols=34 Identities=32% Similarity=0.480 Sum_probs=29.0
Q ss_pred cEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEc
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~A 441 (1171)
+.+|.|+||+||||++..++..+.+.+. +|++++
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~G~-kVllv~ 134 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKRGL-KPALIA 134 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHHHC-CEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCC-eEEEEe
Confidence 6789999999999999999999887765 777665
No 190
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.10 E-value=0.41 Score=53.51 Aligned_cols=55 Identities=29% Similarity=0.427 Sum_probs=36.2
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcC-c--HHHHHHHHHHHHhcCCeE
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP-S--NVAVDQLAEKISATGLKV 461 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~Ap-S--N~AVD~L~eRL~~~glkV 461 (1171)
.++.|.||.|+||||++..+...+...+ ++|++.+- + ..|.+++.......++.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~~-g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~ 158 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNEG-TKVLMAAGDTFRAAASDQLEIWAERTGCEI 158 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTT-CCEEEECCCCSCHHHHHHHHHHHHHHTCEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcC-CeEEEEeecccchhHHHHHHHHHHhcCceE
Confidence 3678999999999999999887766544 58888753 2 334455544322234444
No 191
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.09 E-value=0.18 Score=57.51 Aligned_cols=50 Identities=22% Similarity=0.240 Sum_probs=39.5
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHh
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISA 456 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~ 456 (1171)
..+++|.|+||+|||+++..++..++..+ .+||+++.--. .++|..|+..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g-~~Vl~fSlEms-~~ql~~Rlls 95 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDD-RGVAVFSLEMS-AEQLALRALS 95 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTT-CEEEEEESSSC-HHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC-CeEEEEeCCCC-HHHHHHHHHH
Confidence 56899999999999999999998888754 48999887433 4566677643
No 192
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.06 E-value=0.18 Score=56.96 Aligned_cols=35 Identities=37% Similarity=0.493 Sum_probs=28.8
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEc
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~A 441 (1171)
.+.+|.|++|+|||||+..++..+...+. +|+++.
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l~~~g~-kVllid 140 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYYAELGY-KVLIAA 140 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEEEe
Confidence 35788999999999999999988876654 777764
No 193
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=91.04 E-value=0.18 Score=57.66 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=31.5
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSN 444 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN 444 (1171)
..+++|.|+||+|||+++..++..+.+.+. +++++....
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~-~vlyi~~E~ 99 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGG-IAAFIDAEH 99 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CEEEEESSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCC-eEEEEECCC
Confidence 467999999999999999999988877654 777766543
No 194
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=91.02 E-value=0.19 Score=56.33 Aligned_cols=38 Identities=21% Similarity=0.263 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhc----CCcEEEEcCCCChHhHHHHHHHHHHH
Q 001054 393 ASQVFAVKSVLQ----RPISLIQGPPGTGKTVTSAAIVYHMA 430 (1171)
Q Consensus 393 esQ~~AV~~aL~----~~lsLIqGPPGTGKTtTla~iI~~Ll 430 (1171)
+...+.+..++. ...+||.||||||||+++..++..+.
T Consensus 22 ~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 22 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp HHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 444555555543 23479999999999999988776653
No 195
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=91.02 E-value=0.19 Score=57.65 Aligned_cols=38 Identities=21% Similarity=0.353 Sum_probs=31.6
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCc
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPS 443 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApS 443 (1171)
..+++|.|+||+|||+++..++..+.+.+. ++++++..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~-~vlyid~E 100 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGK-TCAFIDAE 100 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 467999999999999999999988887654 77777653
No 196
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.00 E-value=0.32 Score=51.24 Aligned_cols=36 Identities=31% Similarity=0.465 Sum_probs=27.0
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHH-HcCCCcEEEEc
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMA-KQGQGQVLVCA 441 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Ll-k~~~~rILV~A 441 (1171)
..+++|.||+|+||||++..++...+ ..+. .++++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~-~~~~~~ 66 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGE-PGVFVT 66 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCC-CEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCC-eEEEEE
Confidence 56899999999999999988886554 4444 444443
No 197
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.95 E-value=0.2 Score=58.80 Aligned_cols=50 Identities=20% Similarity=0.207 Sum_probs=39.5
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKIS 455 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~ 455 (1171)
..+++|.|+||+|||+.+..++..++.....+|++++.-.. .+++..|+.
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~-~~~l~~R~~ 249 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP-AAQLTLRMM 249 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC-HHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC-HHHHHHHHH
Confidence 46899999999999999999998888754458998887543 346777764
No 198
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=90.92 E-value=0.13 Score=52.02 Aligned_cols=25 Identities=24% Similarity=0.511 Sum_probs=21.1
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHMA 430 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~Ll 430 (1171)
.+.+|.|+|||||||++..+...+-
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999888877664
No 199
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=90.89 E-value=0.12 Score=52.22 Aligned_cols=33 Identities=27% Similarity=0.459 Sum_probs=24.4
Q ss_pred cEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEE
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ 440 (1171)
+.+|.|+|||||||++..+...|-..+. .+.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~-~~~~~ 35 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGI-NNKII 35 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTC-CEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCc-eEEEE
Confidence 4689999999999998888877643332 45444
No 200
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=90.88 E-value=0.18 Score=52.15 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=26.5
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcC
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP 442 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~Ap 442 (1171)
..+++|.|+||+|||+++..++. ..+ .++++++.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~---~~~-~~v~~i~~ 53 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL---LSG-KKVAYVDT 53 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH---HHC-SEEEEEES
T ss_pred CEEEEEECCCCCCHHHHHHHHHH---HcC-CcEEEEEC
Confidence 46899999999999999988887 333 36666654
No 201
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=90.82 E-value=0.14 Score=58.31 Aligned_cols=26 Identities=23% Similarity=0.242 Sum_probs=21.7
Q ss_pred CcEEE--EcCCCChHhHHHHHHHHHHHH
Q 001054 406 PISLI--QGPPGTGKTVTSAAIVYHMAK 431 (1171)
Q Consensus 406 ~lsLI--qGPPGTGKTtTla~iI~~Llk 431 (1171)
...+| .||||||||+++..++..+..
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 46788 999999999999888876654
No 202
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=90.78 E-value=0.19 Score=55.50 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=29.0
Q ss_pred HHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHH
Q 001054 393 ASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 393 esQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
+.+.+.+.. +..++++|.||+|+|||+++.+++..+
T Consensus 19 ~~el~~L~~-l~~~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 19 EKEIEKLKG-LRAPITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp HHHHHHHHH-TCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hcCCcEEEECCCCCCHHHHHHHHHHhc
Confidence 456666777 666889999999999999998887654
No 203
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.74 E-value=0.1 Score=61.75 Aligned_cols=22 Identities=45% Similarity=0.795 Sum_probs=18.5
Q ss_pred EEEEcCCCChHhHHHHHHHHHH
Q 001054 408 SLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 408 sLIqGPPGTGKTtTla~iI~~L 429 (1171)
+|+.||||||||.++.+++..+
T Consensus 246 ILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 246 ILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp EEECSCTTSSHHHHHHHHHHHH
T ss_pred eEeeCCCCCcHHHHHHHHHhcc
Confidence 6899999999999887776543
No 204
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=90.71 E-value=0.16 Score=59.92 Aligned_cols=24 Identities=38% Similarity=0.571 Sum_probs=19.3
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
+.+||+||||||||+++..+...+
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHh
Confidence 358999999999999877666543
No 205
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=90.71 E-value=0.12 Score=51.01 Aligned_cols=20 Identities=35% Similarity=0.635 Sum_probs=17.1
Q ss_pred CcEEEEcCCCChHhHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAI 425 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~i 425 (1171)
.+.+|.|+|||||||++..+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36789999999999987766
No 206
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=90.69 E-value=0.13 Score=57.43 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=20.3
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
...+||.||||||||+++..+...+
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred CceEEEECCCCccHHHHHHHHHHhC
Confidence 4568999999999999887776544
No 207
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=90.62 E-value=0.18 Score=59.36 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=19.8
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
.-+||.||||||||+++..++..+
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 457999999999999888776554
No 208
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=90.61 E-value=0.21 Score=58.74 Aligned_cols=23 Identities=48% Similarity=0.793 Sum_probs=19.8
Q ss_pred cEEEEcCCCChHhHHHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
-.|+.||||||||+++..+...+
T Consensus 65 ~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 65 AVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHHh
Confidence 58999999999999988777654
No 209
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=90.59 E-value=0.15 Score=51.61 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=20.5
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
....+|.|+|||||||++..+...|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467899999999999888877655
No 210
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=90.56 E-value=0.15 Score=60.63 Aligned_cols=50 Identities=10% Similarity=0.074 Sum_probs=39.7
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKIS 455 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~ 455 (1171)
..+++|.|+||+|||+++..++..++.....+||+++.-.. ..++..|+.
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s-~~~l~~r~~ 291 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDLI 291 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC-HHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC-HHHHHHHHH
Confidence 56899999999999999999998887763458998887554 346777764
No 211
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=90.46 E-value=0.13 Score=51.30 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=17.9
Q ss_pred cEEEEcCCCChHhHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVY 427 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~ 427 (1171)
+.+|.|+|||||||++..+..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 578999999999998877664
No 212
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=90.46 E-value=0.13 Score=58.49 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=19.6
Q ss_pred cEEEEcCCCChHhHHHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
-+||.||||||||+++..++..+
T Consensus 86 ~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 47899999999999988777654
No 213
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=90.42 E-value=0.13 Score=58.22 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=32.2
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcC-CCcEEEEcCcHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQG-QGQVLVCAPSNV 445 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~-~~rILV~ApSN~ 445 (1171)
.++++|.||||||||+++..++..+.+.+ ..+++.+..-+.
T Consensus 28 ~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s 69 (333)
T 3io5_A 28 SGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFG 69 (333)
T ss_dssp SEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccch
Confidence 34789999999999999999998888762 347777765443
No 214
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=90.40 E-value=0.25 Score=50.26 Aligned_cols=34 Identities=29% Similarity=0.481 Sum_probs=26.3
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEE
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ 440 (1171)
.+.+|.|+||+||||++..+...|-..+. ++.++
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~-~~~~~ 47 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGY-RVEVL 47 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCC-eEEEe
Confidence 46789999999999999888877765443 55554
No 215
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.39 E-value=0.22 Score=54.58 Aligned_cols=38 Identities=21% Similarity=0.426 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhcC---CcEEEEcCCCChHhHHHHHHHHHHH
Q 001054 393 ASQVFAVKSVLQR---PISLIQGPPGTGKTVTSAAIVYHMA 430 (1171)
Q Consensus 393 esQ~~AV~~aL~~---~lsLIqGPPGTGKTtTla~iI~~Ll 430 (1171)
+...+.+...+.. +.++|.||||||||+++..++..+.
T Consensus 27 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 27 KETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp THHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 3445555555542 3489999999999999888887764
No 216
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=90.35 E-value=0.22 Score=55.18 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=19.2
Q ss_pred cEEEEcCCCChHhHHHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
+++|.||||+||||++..++..+
T Consensus 35 livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999988776543
No 217
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=90.31 E-value=0.12 Score=56.68 Aligned_cols=20 Identities=45% Similarity=0.853 Sum_probs=17.5
Q ss_pred EEEEcCCCChHhHHHHHHHH
Q 001054 408 SLIQGPPGTGKTVTSAAIVY 427 (1171)
Q Consensus 408 sLIqGPPGTGKTtTla~iI~ 427 (1171)
++|.||||||||+++..++.
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 79999999999998877654
No 218
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=90.30 E-value=0.15 Score=51.79 Aligned_cols=24 Identities=33% Similarity=0.571 Sum_probs=20.1
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
.+.+|.|+||+||||++..+...+
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 357899999999999988877655
No 219
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.25 E-value=0.52 Score=54.09 Aligned_cols=54 Identities=28% Similarity=0.386 Sum_probs=35.9
Q ss_pred cEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcC-c--HHHHHHHHHHHHhcCCeE
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP-S--NVAVDQLAEKISATGLKV 461 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~Ap-S--N~AVD~L~eRL~~~glkV 461 (1171)
++.|.||.|+||||++..+...+... .++|++.+- + ..|.+++.......++.+
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~l~~~-~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~ 215 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHRLKNE-GTKVLMAAGDTFRAAASDQLEIWAERTGCEI 215 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT-TCCEEEECCCCSCHHHHHHHHHHHHHHTCEE
T ss_pred EEEEEcCCCChHHHHHHHHHhhcccc-CCEEEEecccccccchhHHHHHHHHhcCeEE
Confidence 57899999999999999888776554 458888763 2 234555544322334444
No 220
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=90.25 E-value=0.13 Score=55.11 Aligned_cols=21 Identities=43% Similarity=0.702 Sum_probs=18.1
Q ss_pred EEEEcCCCChHhHHHHHHHHH
Q 001054 408 SLIQGPPGTGKTVTSAAIVYH 428 (1171)
Q Consensus 408 sLIqGPPGTGKTtTla~iI~~ 428 (1171)
++|.||||||||+++..+...
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999988777654
No 221
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=90.23 E-value=0.15 Score=57.35 Aligned_cols=53 Identities=15% Similarity=0.221 Sum_probs=36.1
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcC-----CCcEEEEcCcHH-HHHHHHHHHHhc
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQG-----QGQVLVCAPSNV-AVDQLAEKISAT 457 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~-----~~rILV~ApSN~-AVD~L~eRL~~~ 457 (1171)
..+++|.|+||+|||+++..++....... ..++++++.... -.+.+.+++...
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999887654331 347777765542 134555554443
No 222
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=90.20 E-value=0.39 Score=54.36 Aligned_cols=56 Identities=30% Similarity=0.468 Sum_probs=37.6
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEc-Cc--HHHHHHHHHHHHhcCCeEE
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA-PS--NVAVDQLAEKISATGLKVV 462 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~A-pS--N~AVD~L~eRL~~~glkVV 462 (1171)
.++.|.||.|+||||++..++..+...+. +|++.+ .+ ..|.+++...-...++.++
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~~~~g-~V~l~g~D~~r~~a~eql~~~~~~~gv~~v 188 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKNHGF-SVVIAASDTFRAGAIEQLEEHAKRIGVKVI 188 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTC-CEEEEEECCSSTTHHHHHHHHHHHTTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCC-EEEEEeecccccchHHHHHHHHHHcCceEE
Confidence 46889999999999999998877665544 776654 33 3355556554444454443
No 223
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.13 E-value=0.2 Score=53.50 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=29.2
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEc
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~A 441 (1171)
..++++.|.+|+||||++..++..+. .+. +|+++.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~-~v~vvd 48 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNY-KVAYVN 48 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TTS-CEEEEE
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CCC-eEEEEe
Confidence 34678999999999999999998887 554 787775
No 224
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=90.02 E-value=0.18 Score=50.94 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=20.6
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
..+.+|.|+|||||||++..+...+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4568899999999999888776554
No 225
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=90.00 E-value=0.17 Score=52.00 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=20.9
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHMA 430 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~Ll 430 (1171)
.+.+|.|+|||||||++..+...+-
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3678999999999999888877653
No 226
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=89.99 E-value=0.24 Score=56.92 Aligned_cols=39 Identities=31% Similarity=0.366 Sum_probs=32.3
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSN 444 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN 444 (1171)
..+++|.|+||+|||+++..++..+.+.+. +|++++.-.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~-~vlyi~~E~ 112 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGG-TCAFIDAEH 112 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CEEEEESSC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCC-eEEEEECCC
Confidence 457999999999999999999988887654 777777654
No 227
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=89.87 E-value=0.17 Score=50.58 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=18.9
Q ss_pred CcEEEEcCCCChHhHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYH 428 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~ 428 (1171)
.+.+|.|++||||||++..+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999987766544
No 228
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=89.70 E-value=0.2 Score=50.76 Aligned_cols=24 Identities=25% Similarity=0.589 Sum_probs=19.8
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
.+.+|.|+|||||||++..+...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 457899999999999887776554
No 229
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=89.68 E-value=0.56 Score=56.03 Aligned_cols=45 Identities=29% Similarity=0.416 Sum_probs=32.3
Q ss_pred cEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEE-cCcH--HHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC-APSN--VAVDQLAE 452 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~-ApSN--~AVD~L~e 452 (1171)
+++|.|+.|+||||++..+...+... .++|++. +.+. .|++++..
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l~g~D~~r~aa~eQL~~ 342 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFEQQ-GKSVMLAAGDTFRAAAVEQLQV 342 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEECCCTTCHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHHHHhhhc-CCeEEEecCcccchhhHHHHHH
Confidence 67899999999999999888766544 4588887 3332 34555543
No 230
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=89.68 E-value=0.19 Score=50.83 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=19.1
Q ss_pred cEEEEcCCCChHhHHHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
+.+|.|+|||||||++..+...+
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999887776554
No 231
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=89.49 E-value=0.21 Score=56.71 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=20.8
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYH 428 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~ 428 (1171)
..+.+|.||||||||+++..++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 456799999999999999888765
No 232
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=89.43 E-value=0.31 Score=52.87 Aligned_cols=35 Identities=26% Similarity=0.455 Sum_probs=26.0
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEc
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~A 441 (1171)
.+.+|.|+||+||||++..+...|...+. .++++.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~-~~i~~~ 39 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNI-DVIVLG 39 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTC-CEEEEC
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCC-EEEEEC
Confidence 36789999999999998888877655443 454433
No 233
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=89.42 E-value=0.2 Score=50.62 Aligned_cols=23 Identities=26% Similarity=0.639 Sum_probs=19.2
Q ss_pred cEEEEcCCCChHhHHHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
+.+|.|+|||||||++..+...+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 56899999999999888776554
No 234
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=89.39 E-value=0.21 Score=51.65 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.0
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
..+.+|.|+||+||||++..+...+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3578899999999999988887665
No 235
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=89.32 E-value=0.2 Score=51.60 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=20.0
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
.+.+|.|++|+||||++..+...+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999887776554
No 236
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=89.20 E-value=0.22 Score=50.07 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=19.1
Q ss_pred cEEEEcCCCChHhHHHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
..+|.|+|||||||++..+...+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 47899999999999887776554
No 237
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=89.19 E-value=0.21 Score=51.46 Aligned_cols=23 Identities=30% Similarity=0.637 Sum_probs=19.4
Q ss_pred cEEEEcCCCChHhHHHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
+.+|.|+|||||||++..+...+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999887776654
No 238
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.17 E-value=0.37 Score=49.61 Aligned_cols=36 Identities=19% Similarity=0.236 Sum_probs=27.2
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEc
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~A 441 (1171)
-++.+|.|+.|+||||++..++..+...+. +|-++.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~-~v~~i~ 41 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGI-RPGLIK 41 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCC-ceeEEe
Confidence 357889999999999999999887765543 444443
No 239
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=89.15 E-value=0.23 Score=55.89 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=21.9
Q ss_pred cEEEEcCCCChHhHHHHHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHMAK 431 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~Llk 431 (1171)
..|+.||||||||+++..++..+..
T Consensus 26 a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 26 ALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred eEEEECCCCchHHHHHHHHHHHHhC
Confidence 4899999999999999988887754
No 240
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=89.15 E-value=0.27 Score=56.00 Aligned_cols=35 Identities=34% Similarity=0.493 Sum_probs=29.1
Q ss_pred cEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcC
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP 442 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~Ap 442 (1171)
.++|.|+||+||||++..++..+...+. +|+++..
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~~l~~~g~-kV~vi~~ 115 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGMHLIERGH-RVAVLAV 115 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTC-CEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCC-ceEEEec
Confidence 5789999999999999999988876654 7777654
No 241
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.12 E-value=0.36 Score=50.99 Aligned_cols=39 Identities=26% Similarity=0.280 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHH
Q 001054 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYH 428 (1171)
Q Consensus 390 ~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~ 428 (1171)
..+..|+.+++.+-...++.|.||.|+||||++..+.-.
T Consensus 7 pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 7 PKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred cCCHhHHHHHHhccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 346678888888766789999999999999998776654
No 242
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=89.08 E-value=0.31 Score=57.40 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=39.4
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHh
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISA 456 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~ 456 (1171)
..+++|.|+||+|||+.+..++..++..+ .+||+++.-. ..+++..|+..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g-~~vl~fSlEm-s~~ql~~R~~~ 246 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDND-DVVNLHSLEM-GKKENIKRLIV 246 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTT-CEEEEECSSS-CTTHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcC-CEEEEEECCC-CHHHHHHHHHH
Confidence 56899999999999999999999988874 4899988753 33456666543
No 243
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=89.07 E-value=0.18 Score=55.00 Aligned_cols=22 Identities=41% Similarity=0.659 Sum_probs=18.5
Q ss_pred EEEEcCCCChHhHHHHHHHHHH
Q 001054 408 SLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 408 sLIqGPPGTGKTtTla~iI~~L 429 (1171)
++|.||||||||+++..+...+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 7899999999999887776543
No 244
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=89.04 E-value=0.31 Score=57.70 Aligned_cols=39 Identities=23% Similarity=0.451 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhc---CCcEEEEcCCCChHhHHHHHHHHHHHH
Q 001054 393 ASQVFAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHMAK 431 (1171)
Q Consensus 393 esQ~~AV~~aL~---~~lsLIqGPPGTGKTtTla~iI~~Llk 431 (1171)
+...+.+..++. .+..||.||||||||+++..+...+..
T Consensus 186 ~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 186 SKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp HHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 344445555553 456799999999999998887776653
No 245
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=89.03 E-value=0.22 Score=56.47 Aligned_cols=54 Identities=20% Similarity=0.191 Sum_probs=36.4
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHc-----CCCcEEEEcCcHH-HHHHHHHHHHhcC
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQ-----GQGQVLVCAPSNV-AVDQLAEKISATG 458 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~-----~~~rILV~ApSN~-AVD~L~eRL~~~g 458 (1171)
..+++|.|+||+|||+++..++...... ...++++++..+. ..+.+.+++...+
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g 181 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFN 181 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcC
Confidence 4578999999999999999888764331 1347777766553 2455665554443
No 246
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=88.99 E-value=0.24 Score=49.30 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=19.7
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
.+.+|.|+|||||||++..+...|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999887776654
No 247
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=88.98 E-value=0.22 Score=50.58 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=20.6
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
..+.+|.|+|||||||++..+...+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999888777654
No 248
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=88.98 E-value=0.21 Score=50.32 Aligned_cols=23 Identities=35% Similarity=0.650 Sum_probs=19.1
Q ss_pred cEEEEcCCCChHhHHHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
+.+|.|+|||||||++..+...+
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999887776554
No 249
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=88.97 E-value=0.22 Score=51.73 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=18.4
Q ss_pred EEEEcCCCChHhHHHHHHHHHH
Q 001054 408 SLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 408 sLIqGPPGTGKTtTla~iI~~L 429 (1171)
.+|.|||||||||++..+...+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999888776554
No 250
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=88.90 E-value=0.33 Score=55.25 Aligned_cols=38 Identities=29% Similarity=0.408 Sum_probs=32.0
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCc
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPS 443 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApS 443 (1171)
..+.++.|.+|+||||+++.++..|.+.+. |||++.--
T Consensus 26 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~-rVLlvD~D 63 (349)
T 3ug7_A 26 TKYIMFGGKGGVGKTTMSAATGVYLAEKGL-KVVIVSTD 63 (349)
T ss_dssp CEEEEEECSSSTTHHHHHHHHHHHHHHSSC-CEEEEECC
T ss_pred CEEEEEeCCCCccHHHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 446788999999999999999999998865 88887643
No 251
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=88.84 E-value=0.49 Score=47.73 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=23.6
Q ss_pred cEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEE
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLV 439 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV 439 (1171)
+.+|.|+|||||||++..+...+-..+- .++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~-~~i~ 33 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGY-FVSL 33 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTC-CEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEE
Confidence 4689999999999998888776654443 4443
No 252
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=88.82 E-value=0.22 Score=59.72 Aligned_cols=29 Identities=21% Similarity=0.523 Sum_probs=22.5
Q ss_pred HhhcCCcEEEEcCCCChHhHHHHHHHHHH
Q 001054 401 SVLQRPISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 401 ~aL~~~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
.+......||.||||||||+++..+...+
T Consensus 37 al~~~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 37 AALSGESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp HHHHTCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred HHhcCCeeEeecCchHHHHHHHHHHHHHH
Confidence 33447788999999999999877766543
No 253
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=88.82 E-value=0.23 Score=50.61 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=19.4
Q ss_pred cEEEEcCCCChHhHHHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
+.+|.|++||||||++..+...|
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 46899999999999888777655
No 254
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=88.80 E-value=0.22 Score=53.90 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=19.3
Q ss_pred cEEEEcCCCChHhHHHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
+.+|.|||||||||++..++..+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 57899999999999888776554
No 255
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=88.76 E-value=0.34 Score=53.46 Aligned_cols=39 Identities=21% Similarity=0.191 Sum_probs=28.3
Q ss_pred CCCHHHHH-HHHHhhcC-----CcEEEEcCCCChHhHHHHHHHHH
Q 001054 390 ELNASQVF-AVKSVLQR-----PISLIQGPPGTGKTVTSAAIVYH 428 (1171)
Q Consensus 390 ~LNesQ~~-AV~~aL~~-----~lsLIqGPPGTGKTtTla~iI~~ 428 (1171)
..|..+.. ++...+.. .-.+|.||||||||.++..++..
T Consensus 83 g~~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 83 GYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp TCCHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 56777744 35555542 24899999999999998877754
No 256
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=88.75 E-value=0.64 Score=54.57 Aligned_cols=56 Identities=27% Similarity=0.369 Sum_probs=37.0
Q ss_pred cEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcC---cHHHHHHHHHHHHhcCCeEEE
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP---SNVAVDQLAEKISATGLKVVR 463 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~Ap---SN~AVD~L~eRL~~~glkVVR 463 (1171)
+.+|.|+.|+||||++..++..+...+. +|+++.. ...|.+.+...-...++.++.
T Consensus 100 vi~i~G~~GsGKTT~~~~LA~~l~~~g~-~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~ 158 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLALYYKGKGR-RPLLVAADTQRPAAREQLRLLGEKVGVPVLE 158 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTC-CEEEEECCSSCHHHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCC-eEEEeeccccCchhHHHHHHhcccCCccEEe
Confidence 5677899999999999999988876554 7776642 244444454332334555544
No 257
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=88.74 E-value=0.22 Score=50.68 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=20.7
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
..+.+|.|+|||||||++..+...+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999887776654
No 258
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=88.65 E-value=0.26 Score=49.14 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=19.5
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
.+.+|.|+|||||||+...+...|
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999887776554
No 259
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=88.62 E-value=0.59 Score=48.13 Aligned_cols=28 Identities=21% Similarity=0.427 Sum_probs=22.9
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHHHHcC
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHMAKQG 433 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~Llk~~ 433 (1171)
.+.+|.|+|||||||++..+...|-..+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~ 37 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALCAAG 37 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 4678999999999999988887765443
No 260
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=88.60 E-value=0.23 Score=51.20 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=22.1
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHHHHc
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHMAKQ 432 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~Llk~ 432 (1171)
.+.+|.|+|||||||++..+...+-..
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 467899999999999988887766443
No 261
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=88.53 E-value=0.33 Score=55.59 Aligned_cols=35 Identities=31% Similarity=0.549 Sum_probs=27.2
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEE
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLV 439 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV 439 (1171)
.++++|.||.|+||||++..++..+-.....+|+.
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t 157 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILT 157 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEE
Confidence 56899999999999999998887765543335543
No 262
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=88.52 E-value=0.27 Score=50.80 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=21.0
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
..+.+|.||+|+||||++..+...+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4578999999999999988777655
No 263
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=88.50 E-value=0.2 Score=50.84 Aligned_cols=23 Identities=35% Similarity=0.637 Sum_probs=18.9
Q ss_pred CCcEEEEcCCCChHhHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVY 427 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~ 427 (1171)
..+++|.||+|+||||++..+..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 34788999999999998776654
No 264
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=88.33 E-value=0.36 Score=54.20 Aligned_cols=36 Identities=39% Similarity=0.558 Sum_probs=31.1
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcC
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP 442 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~Ap 442 (1171)
.+.++.|.+|+||||+++.++..+.+.+. |||++..
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~-rVLlvD~ 50 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARSGK-KTLVIST 50 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTC-CEEEEEC
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHCCC-cEEEEeC
Confidence 46788999999999999999999998865 8888764
No 265
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=88.33 E-value=0.21 Score=51.99 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=17.5
Q ss_pred EEEEcCCCChHhHHHHHHHHH
Q 001054 408 SLIQGPPGTGKTVTSAAIVYH 428 (1171)
Q Consensus 408 sLIqGPPGTGKTtTla~iI~~ 428 (1171)
.+|.|||||||||++..+...
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578999999999988776654
No 266
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=88.24 E-value=0.92 Score=50.39 Aligned_cols=56 Identities=27% Similarity=0.346 Sum_probs=36.3
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcC---cHHHHHHHHHHHHhcCCeEE
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP---SNVAVDQLAEKISATGLKVV 462 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~Ap---SN~AVD~L~eRL~~~glkVV 462 (1171)
.+..|.|++|+||||++..++..+...+ .+|+++.. ...+..++.......++.++
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~~~-~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~ 157 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKG-RRPLLVAADTQRPAAREQLRLLGEKVGVPVL 157 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHTT-CCEEEEECCSSCHHHHHHHHHHHHHHTCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEecCCcccHhHHHHHHHhcccCCeEEE
Confidence 3566779999999999999998877654 47777653 23344444332333445444
No 267
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=88.05 E-value=0.27 Score=51.41 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=19.4
Q ss_pred cEEEEcCCCChHhHHHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
+.+|.|+|||||||++..+...+
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999888777654
No 268
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=88.03 E-value=0.29 Score=49.10 Aligned_cols=24 Identities=21% Similarity=0.508 Sum_probs=19.5
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
.+.+|.|++|+||||++..+...+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh
Confidence 467899999999999887766543
No 269
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=88.00 E-value=0.19 Score=50.62 Aligned_cols=23 Identities=43% Similarity=0.627 Sum_probs=14.9
Q ss_pred CcEEEEcCCCChHhHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYH 428 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~ 428 (1171)
.+.+|.|+|||||||++..+...
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46789999999999987776544
No 270
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=87.96 E-value=0.43 Score=52.65 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhc-CCcEEEEcCCCChHhHHHHHHHHH
Q 001054 393 ASQVFAVKSVLQ-RPISLIQGPPGTGKTVTSAAIVYH 428 (1171)
Q Consensus 393 esQ~~AV~~aL~-~~lsLIqGPPGTGKTtTla~iI~~ 428 (1171)
+.+.+.+..++. .++++|.||+|+|||+++.+++..
T Consensus 18 ~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 18 EEESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp HHHHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEECCCcCCHHHHHHHHHHH
Confidence 345555665554 478999999999999998887654
No 271
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=87.92 E-value=0.37 Score=55.40 Aligned_cols=37 Identities=22% Similarity=0.434 Sum_probs=28.9
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEc
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~A 441 (1171)
..+++|.||.|+||||++..++..+-.....+|++.-
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e 172 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 172 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEec
Confidence 5688999999999999999988766554345776643
No 272
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=87.87 E-value=0.25 Score=52.73 Aligned_cols=25 Identities=24% Similarity=0.526 Sum_probs=20.2
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
.++.+|.||||+||||.+..++..+
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3567889999999999887776554
No 273
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=87.79 E-value=0.28 Score=51.48 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=19.9
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
.+.+|.|+||+||||++..+...+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999888777654
No 274
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=87.36 E-value=0.34 Score=48.10 Aligned_cols=23 Identities=13% Similarity=0.158 Sum_probs=18.7
Q ss_pred cEEEEcCCCChHhHHHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
..+|.|+|||||||++..+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999887776554
No 275
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=87.34 E-value=0.32 Score=51.32 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=18.1
Q ss_pred EEEEcCCCChHhHHHHHHHHHH
Q 001054 408 SLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 408 sLIqGPPGTGKTtTla~iI~~L 429 (1171)
.+|.||||+||||.+..++..+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999887776554
No 276
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=87.22 E-value=0.28 Score=58.53 Aligned_cols=22 Identities=45% Similarity=0.732 Sum_probs=18.2
Q ss_pred cEEEEcCCCChHhHHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYH 428 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~ 428 (1171)
-+||.||||||||+++..+...
T Consensus 240 ~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 240 GILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEECcCCCCHHHHHHHHHHH
Confidence 4799999999999988776543
No 277
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=87.21 E-value=0.32 Score=52.20 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=19.2
Q ss_pred cEEEEcCCCChHhHHHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
..+|.||||+||||++..+...+
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999887777554
No 278
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=87.18 E-value=0.98 Score=62.02 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=32.8
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNV 445 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~ 445 (1171)
...++|.||||||||+++.+++....+++. +++++++.+.
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~G~-~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQREGK-TCAFIDAEHA 1466 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTC-CEEEECTTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCC-cEEEEEcccc
Confidence 457899999999999999999887776654 8888877653
No 279
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=87.16 E-value=0.28 Score=50.48 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=18.4
Q ss_pred cEEEEcCCCChHhHHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYH 428 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~ 428 (1171)
+.+|.|+|||||||++..+...
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999987777654
No 280
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=87.16 E-value=0.67 Score=49.12 Aligned_cols=39 Identities=21% Similarity=0.458 Sum_probs=28.3
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEE-cCcH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC-APSN 444 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~-ApSN 444 (1171)
..+.+|.|++|+||||.+..+..+|-..+. +|.++ -|..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~-~v~~~~~p~~ 45 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGI-EVQLTREPGG 45 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTC-CEEEEESSCS
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCC-CcccccCCCC
Confidence 446789999999999999888887765554 45443 4443
No 281
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=87.15 E-value=0.34 Score=49.41 Aligned_cols=23 Identities=43% Similarity=0.546 Sum_probs=19.0
Q ss_pred CcEEEEcCCCChHhHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYH 428 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~ 428 (1171)
...+|.|+|||||||++..+...
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46789999999999988766654
No 282
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=87.15 E-value=0.29 Score=50.71 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=20.4
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
..+.+|.||+|+||||++..++..+
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4578999999999999887776544
No 283
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=87.11 E-value=0.46 Score=53.19 Aligned_cols=36 Identities=31% Similarity=0.414 Sum_probs=28.2
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcC
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP 442 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~Ap 442 (1171)
.++.|.||.|+||||++..+...+... .++|++.+-
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~g~ 138 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFCAG 138 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEECC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEEee
Confidence 478899999999999999888766543 457877753
No 284
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=87.07 E-value=0.34 Score=51.19 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=19.3
Q ss_pred cEEEEcCCCChHhHHHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
+.+|.|+|||||||++..+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999888777655
No 285
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=87.05 E-value=0.91 Score=49.71 Aligned_cols=34 Identities=26% Similarity=0.485 Sum_probs=27.4
Q ss_pred CcEEEEc-CCCChHhHHHHHHHHHHHHcCCCcEEEE
Q 001054 406 PISLIQG-PPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (1171)
Q Consensus 406 ~lsLIqG-PPGTGKTtTla~iI~~Llk~~~~rILV~ 440 (1171)
.+.+|.+ -+|.||||+++.++..|.+.+. |||++
T Consensus 83 kvI~vts~kgG~GKTt~a~nLA~~lA~~G~-rVLLI 117 (271)
T 3bfv_A 83 QSIVITSEAPGAGKSTIAANLAVAYAQAGY-KTLIV 117 (271)
T ss_dssp CEEEEECSSTTSSHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCC-eEEEE
Confidence 3556665 5999999999999999988765 88776
No 286
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=87.05 E-value=0.3 Score=49.68 Aligned_cols=21 Identities=33% Similarity=0.673 Sum_probs=18.2
Q ss_pred cEEEEcCCCChHhHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVY 427 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~ 427 (1171)
+++|.||+|+||||++..+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999887754
No 287
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=87.03 E-value=0.26 Score=54.98 Aligned_cols=53 Identities=13% Similarity=0.226 Sum_probs=35.8
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHH------------cC---CCcEEEEcCcHHH-HHHHHHHHHhc
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAK------------QG---QGQVLVCAPSNVA-VDQLAEKISAT 457 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk------------~~---~~rILV~ApSN~A-VD~L~eRL~~~ 457 (1171)
..+++|.|+||+|||+++..++..... .+ ..++++++.-+.. .++|.+++...
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~ 166 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHA 166 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 457999999999999999988875321 12 1478877765531 45555555443
No 288
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=87.00 E-value=0.34 Score=51.37 Aligned_cols=24 Identities=25% Similarity=0.587 Sum_probs=20.2
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
.+.+|.|+|||||||++..+...+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999888877665
No 289
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=86.83 E-value=0.5 Score=55.72 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=19.6
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
.-.|+.||||||||+++..++..+
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHc
Confidence 458999999999999887776544
No 290
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=86.80 E-value=0.27 Score=51.79 Aligned_cols=24 Identities=38% Similarity=0.624 Sum_probs=19.3
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
.+.+|.|+|||||||++..+...+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999877766543
No 291
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=86.79 E-value=0.32 Score=49.56 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=20.2
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYH 428 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~ 428 (1171)
..+++|.||+|+||||++..+...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 567899999999999988777654
No 292
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=86.78 E-value=0.37 Score=49.53 Aligned_cols=23 Identities=39% Similarity=0.588 Sum_probs=19.2
Q ss_pred cEEEEcCCCChHhHHHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
.+.|.||+|+||||++..++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36799999999999988777655
No 293
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=86.77 E-value=0.48 Score=52.76 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=19.2
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYH 428 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~ 428 (1171)
...+||.|+||||||+++..+...
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEEEECCCCchHHHHHHHHHHh
Confidence 456899999999999987666543
No 294
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=86.70 E-value=0.37 Score=49.74 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHH
Q 001054 390 ELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMA 430 (1171)
Q Consensus 390 ~LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Ll 430 (1171)
.++..++.+... -...+..|.||+|+||||++..+...|-
T Consensus 11 ~~~~~~~~~~~~-~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 11 SVEKVDRQRLLD-QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCCHHHHHHHHT-SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccCHHHHHHhcC-CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 355565544432 1245778999999999999888777665
No 295
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=86.68 E-value=0.54 Score=52.58 Aligned_cols=23 Identities=17% Similarity=-0.064 Sum_probs=19.6
Q ss_pred CcEEEEcCCCChHhHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYH 428 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~ 428 (1171)
+.+|+.||||||||+++..++..
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999988877754
No 296
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=86.55 E-value=0.29 Score=51.16 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=19.8
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYH 428 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~ 428 (1171)
..+++|.||+|+||||++..++..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 457889999999999988776643
No 297
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=86.51 E-value=0.93 Score=49.57 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=26.9
Q ss_pred CcEEEE--cCCCChHhHHHHHHHHHHHHcCCCcEEEE
Q 001054 406 PISLIQ--GPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (1171)
Q Consensus 406 ~lsLIq--GPPGTGKTtTla~iI~~Llk~~~~rILV~ 440 (1171)
-+++.. +-.|+||||+++.++..|.+.+. +||++
T Consensus 36 ~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~-rVlli 71 (298)
T 2oze_A 36 AIVILNNYFKGGVGKSKLSTMFAYLTDKLNL-KVLMI 71 (298)
T ss_dssp CEEEEECCSSSSSSHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHhCCC-eEEEE
Confidence 344444 59999999999999998887765 88874
No 298
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=86.42 E-value=0.55 Score=51.29 Aligned_cols=37 Identities=22% Similarity=0.434 Sum_probs=27.9
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEc
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~A 441 (1171)
..+++|.||.|+||||++..++..+-.....+|++.-
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g 61 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE 61 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcC
Confidence 5689999999999999998887765443234776653
No 299
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=86.38 E-value=0.54 Score=51.63 Aligned_cols=54 Identities=13% Similarity=0.044 Sum_probs=41.5
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhcCCe
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLK 460 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~~glk 460 (1171)
...+||.|+||||||++....++.-++++. +++++++.- ..++|.+++...|++
T Consensus 21 gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge-~~~~~~~~e-~~~~l~~~~~~~G~d 74 (260)
T 3bs4_A 21 SLILIHEEDASSRGKDILFYILSRKLKSDN-LVGMFSISY-PLQLIIRILSRFGVD 74 (260)
T ss_dssp CEEEEEECSGGGCHHHHHHHHHHHHHHTTC-EEEEEECSS-CHHHHHHHHHHTTCC
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHHCCC-cEEEEEEeC-CHHHHHHHHHHcCCC
Confidence 446899999999999888888888887765 888888854 445677777666654
No 300
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=86.36 E-value=0.28 Score=50.28 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=20.0
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
.+.+|.|++||||||++..+...+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999988777655
No 301
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=86.36 E-value=0.37 Score=50.26 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=18.6
Q ss_pred EEEEcCCCChHhHHHHHHHHHH
Q 001054 408 SLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 408 sLIqGPPGTGKTtTla~iI~~L 429 (1171)
.+|.|+|||||||++..+...+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5799999999999888777655
No 302
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=86.29 E-value=0.37 Score=50.51 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=19.4
Q ss_pred cEEEEcCCCChHhHHHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
+.+|.|+|||||||++..+...+
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46889999999999888777665
No 303
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=86.24 E-value=0.41 Score=51.10 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=20.8
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
..+.+|.||+|+||||++..+...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999888777554
No 304
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=86.21 E-value=0.55 Score=53.84 Aligned_cols=59 Identities=19% Similarity=0.277 Sum_probs=43.1
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhcCCeEEEeccc
Q 001054 404 QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAK 467 (1171)
Q Consensus 404 ~~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~~glkVVRlg~~ 467 (1171)
.++.++|.|++|+|||+++..++..+...+ .+|+++=+.+.... +++ ..+-.++++...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~-~~~~~~D~~~~~~~-~~~---~~gg~~~~~~~~ 92 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQG-SRVIIIDPEREYKE-MCR---KLGGVWINCTGG 92 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTT-CCEEEEESSCCSHH-HHH---HTTCEEEETTSG
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCC-CEEEEEeCCcCHHH-HHH---HcCCEEEEECCC
Confidence 367789999999999999999998877655 48999888764332 223 245577777643
No 305
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=86.14 E-value=0.54 Score=58.86 Aligned_cols=38 Identities=24% Similarity=0.455 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhc---CCcEEEEcCCCChHhHHHHHHHHHHH
Q 001054 393 ASQVFAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHMA 430 (1171)
Q Consensus 393 esQ~~AV~~aL~---~~lsLIqGPPGTGKTtTla~iI~~Ll 430 (1171)
+...+.+..++. ....||.||||||||+++..+...+.
T Consensus 186 ~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~ 226 (758)
T 3pxi_A 186 SKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (758)
T ss_dssp HHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHh
Confidence 455555555553 34689999999999998877776663
No 306
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=86.13 E-value=0.59 Score=56.71 Aligned_cols=38 Identities=34% Similarity=0.551 Sum_probs=32.3
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCc
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPS 443 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApS 443 (1171)
..+.++.|.+|+||||+++.++..+.+.+. |||++..-
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~-rVLlvd~D 45 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGK-RVLLVSTD 45 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEECC
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHCCC-cEEEEECC
Confidence 457899999999999999999999998865 78876543
No 307
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=85.93 E-value=0.38 Score=49.26 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=19.8
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYH 428 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~ 428 (1171)
..++.|.||+|+||||++..+...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 457889999999999988776643
No 308
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=85.83 E-value=0.67 Score=48.00 Aligned_cols=34 Identities=26% Similarity=0.283 Sum_probs=24.3
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEE
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ 440 (1171)
.+..|.|++|+||||++..+...+-..+ ..|.+.
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~-~~v~~~ 56 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQG-ISVCVF 56 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTT-CCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcC-CeEEEe
Confidence 3678999999999999887776554333 255544
No 309
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=85.78 E-value=0.26 Score=51.30 Aligned_cols=46 Identities=28% Similarity=0.414 Sum_probs=28.1
Q ss_pred cEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHhc
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISAT 457 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~~ 457 (1171)
+.+|.|++|||||+.+..++.. + .+++.++.....-+++.+|+..+
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~----~-~~~~yiaT~~~~d~e~~~rI~~h 46 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD----A-PQVLYIATSQILDDEMAARIQHH 46 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS----C-SSEEEEECCCC------CHHHHH
T ss_pred CEEEECCCCCcHHHHHHHHHhc----C-CCeEEEecCCCCCHHHHHHHHHH
Confidence 3689999999999987766533 3 36666665444456777777543
No 310
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=85.72 E-value=0.4 Score=50.38 Aligned_cols=30 Identities=27% Similarity=0.458 Sum_probs=26.3
Q ss_pred EEcCCCChHhHHHHHHHHHHHHcCCCcEEEE
Q 001054 410 IQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (1171)
Q Consensus 410 IqGPPGTGKTtTla~iI~~Llk~~~~rILV~ 440 (1171)
|.|..|+||||+++.++..|.+.+. |||++
T Consensus 5 vs~kGGvGKTt~a~~LA~~la~~g~-~Vlli 34 (254)
T 3kjh_A 5 VAGKGGVGKTTVAAGLIKIMASDYD-KIYAV 34 (254)
T ss_dssp EECSSSHHHHHHHHHHHHHHTTTCS-CEEEE
T ss_pred EecCCCCCHHHHHHHHHHHHHHCCC-eEEEE
Confidence 4899999999999999999987764 88887
No 311
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=85.64 E-value=0.53 Score=53.40 Aligned_cols=38 Identities=29% Similarity=0.417 Sum_probs=31.5
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCc
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPS 443 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApS 443 (1171)
..+.++.|..|+||||+++.++..|.+.+. +||++.--
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~-~vllid~D 53 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRR-SVLLLSTD 53 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTSSS-CEEEEECC
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhCCC-cEEEEECC
Confidence 457889999999999999999998887765 77777643
No 312
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=85.62 E-value=0.73 Score=47.96 Aligned_cols=34 Identities=21% Similarity=0.169 Sum_probs=28.1
Q ss_pred cEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEc
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~A 441 (1171)
+++..+-+|+||||+.+.++..|.+.+. |||++=
T Consensus 4 I~v~s~kgGvGKTt~a~nLa~~la~~G~-rVll~d 37 (224)
T 1byi_A 4 YFVTGTDTEVGKTVASCALLQAAKAAGY-RTAGYK 37 (224)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHHHHTTC-CEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC-CEEEEc
Confidence 4556667999999999999999988765 898863
No 313
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=85.61 E-value=0.57 Score=48.75 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHH
Q 001054 391 LNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMA 430 (1171)
Q Consensus 391 LNesQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Ll 430 (1171)
....++.... .-...+.+|.|++|+||||++..+...|-
T Consensus 12 ~~~~~r~~~~-~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 12 LTRSERTELR-NQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CCHHHHHHHH-TSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCHHHhhccc-CCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3455555533 22244678999999999999888777664
No 314
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=85.58 E-value=0.82 Score=49.08 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=20.9
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHc
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQ 432 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~ 432 (1171)
..+.+|.|++|+||||.+..+...|-..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4567899999999999999988887665
No 315
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=85.55 E-value=0.46 Score=49.58 Aligned_cols=24 Identities=33% Similarity=0.635 Sum_probs=19.2
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
....|.||+||||||++..+...+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999887766543
No 316
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=85.44 E-value=0.4 Score=48.48 Aligned_cols=20 Identities=20% Similarity=0.461 Sum_probs=17.5
Q ss_pred CCcEEEEcCCCChHhHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAA 424 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~ 424 (1171)
..++.|.||+|+||||++..
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 35789999999999999884
No 317
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=85.44 E-value=0.35 Score=49.52 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=19.4
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYH 428 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~ 428 (1171)
..+++|.||+|+||||++..+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457889999999999987766543
No 318
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=85.38 E-value=0.42 Score=56.86 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=19.0
Q ss_pred cEEEEcCCCChHhHHHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
-+||.||||||||+++..+...+
T Consensus 51 gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 37899999999999888776543
No 319
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=85.32 E-value=0.65 Score=48.09 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=26.0
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEc
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~A 441 (1171)
....+|.|.+|+||||++..++..+... .++.++.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~--~~~~~i~ 64 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNE--VKIGAML 64 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTT--SCEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccC--CeEEEEe
Confidence 3467899999999999999888776432 3555543
No 320
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=85.30 E-value=0.26 Score=50.82 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=20.2
Q ss_pred cEEEEcCCCChHhHHHHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHMA 430 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~Ll 430 (1171)
+.+|.|++||||||.+..++..|-
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 568999999999999888777664
No 321
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=85.27 E-value=0.65 Score=52.33 Aligned_cols=36 Identities=31% Similarity=0.431 Sum_probs=30.9
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEc
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~A 441 (1171)
..+.++.|.+|.||||+.+.++..|.+.+. |||++.
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~-rVllvD 54 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRS-SVLLIS 54 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTSSS-CEEEEE
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-eEEEEE
Confidence 567888999999999999999999988765 888774
No 322
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=85.21 E-value=1.2 Score=49.62 Aligned_cols=35 Identities=34% Similarity=0.531 Sum_probs=27.8
Q ss_pred CcEEEEc-CCCChHhHHHHHHHHHHHHcCCCcEEEEc
Q 001054 406 PISLIQG-PPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (1171)
Q Consensus 406 ~lsLIqG-PPGTGKTtTla~iI~~Llk~~~~rILV~A 441 (1171)
.+.+|.+ -+|.||||+++.++..|.+.+. |||++-
T Consensus 105 kvI~vts~kgG~GKTtva~nLA~~lA~~G~-rVLLID 140 (299)
T 3cio_A 105 NILMITGATPDSGKTFVSSTLAAVIAQSDQ-KVLFID 140 (299)
T ss_dssp CEEEEEESSSSSCHHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHhCCC-cEEEEE
Confidence 4556666 4899999999999999988765 787763
No 323
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=85.21 E-value=0.31 Score=52.61 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=18.9
Q ss_pred cEEEEcCCCChHhHHHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
+.+|.|+||+||||++..+...+
T Consensus 34 ~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEEESCGGGTTHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 57899999999999887776543
No 324
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=85.18 E-value=0.79 Score=46.15 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=20.9
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHMAK 431 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~Llk 431 (1171)
.+.+|.|++|+||||++..+...|..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 35789999999999988877766544
No 325
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=84.98 E-value=0.79 Score=49.04 Aligned_cols=34 Identities=32% Similarity=0.509 Sum_probs=28.9
Q ss_pred cEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEc
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~A 441 (1171)
++++.+..|+||||+++.++..|.+.+. +||++-
T Consensus 5 I~v~s~kgGvGKTt~a~~LA~~la~~g~-~VlliD 38 (263)
T 1hyq_A 5 ITVASGKGGTGKTTITANLGVALAQLGH-DVTIVD 38 (263)
T ss_dssp EEEEESSSCSCHHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHhCCC-cEEEEE
Confidence 5677889999999999999999988765 888874
No 326
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=84.94 E-value=0.65 Score=55.72 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHhhc-CCcEEEEcCCCChHhHHHHHHHHHH
Q 001054 391 LNASQVFAVKSVLQ-RPISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 391 LNesQ~~AV~~aL~-~~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
++..+.+-+...+. ...++|.||.|+||||++..++..+
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 56666666666555 4468999999999999998776543
No 327
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=84.92 E-value=0.6 Score=47.70 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=27.5
Q ss_pred EEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcC
Q 001054 408 SLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP 442 (1171)
Q Consensus 408 sLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~Ap 442 (1171)
++..+-.|+||||+++.++..|.+.+. +||++-.
T Consensus 5 ~v~s~kgG~GKTt~a~~la~~la~~g~-~vlliD~ 38 (206)
T 4dzz_A 5 SFLNPKGGSGKTTAVINIATALSRSGY-NIAVVDT 38 (206)
T ss_dssp EECCSSTTSSHHHHHHHHHHHHHHTTC-CEEEEEC
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHCCC-eEEEEEC
Confidence 455678999999999999999988665 7877753
No 328
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=84.86 E-value=0.97 Score=48.70 Aligned_cols=35 Identities=31% Similarity=0.562 Sum_probs=29.1
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEc
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~A 441 (1171)
-++++.+-.|+||||+++.++..|.+.+. +||++=
T Consensus 20 vI~v~s~kGGvGKTT~a~nLA~~la~~G~-~VlliD 54 (262)
T 2ph1_A 20 RIAVMSGKGGVGKSTVTALLAVHYARQGK-KVGILD 54 (262)
T ss_dssp EEEEECSSSCTTHHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHHCCC-eEEEEe
Confidence 45667789999999999999999988765 888863
No 329
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=84.77 E-value=0.7 Score=49.12 Aligned_cols=34 Identities=38% Similarity=0.575 Sum_probs=28.2
Q ss_pred cEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEc
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~A 441 (1171)
+++..+-.|+||||+++.++..|.+.+. +||++=
T Consensus 5 i~v~s~kgGvGKTt~a~~LA~~la~~g~-~VlliD 38 (260)
T 3q9l_A 5 IVVTSGKGGVGKTTSSAAIATGLAQKGK-KTVVID 38 (260)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhCCC-cEEEEE
Confidence 4566788999999999999999998765 888763
No 330
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=84.75 E-value=1 Score=48.63 Aligned_cols=40 Identities=20% Similarity=0.349 Sum_probs=29.4
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCC-cEEEEcCcH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQG-QVLVCAPSN 444 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~-rILV~ApSN 444 (1171)
..+.+|.|++|+||||.+..+...|-..+.. -++.--|+.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~ 67 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGG 67 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCC
Confidence 4578899999999999999998888776653 233334543
No 331
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=84.66 E-value=0.7 Score=53.64 Aligned_cols=43 Identities=23% Similarity=0.438 Sum_probs=36.1
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVD 448 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD 448 (1171)
...++|.|++|||||+++..++.++++.+. +|+|+=+.+....
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~-~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGD-RMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTC-EEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCC-cEEEEeCCCchhH
Confidence 466899999999999999888988888764 8999888876654
No 332
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=84.61 E-value=0.49 Score=57.11 Aligned_cols=25 Identities=40% Similarity=0.725 Sum_probs=20.5
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
...++|.||||||||+++..+...+
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999887776554
No 333
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=84.53 E-value=0.48 Score=48.41 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=19.6
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
.++.|.||.|+||||++..++..+
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 467899999999999887776543
No 334
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=84.51 E-value=0.77 Score=50.59 Aligned_cols=33 Identities=27% Similarity=0.404 Sum_probs=27.7
Q ss_pred cEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEE
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ 440 (1171)
+..|.|-.|+||||+++.++..|.+.+. +||++
T Consensus 43 vI~v~~KGGvGKTT~a~nLA~~La~~G~-~Vlli 75 (307)
T 3end_A 43 VFAVYGKGGIGKSTTSSNLSAAFSILGK-RVLQI 75 (307)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHCCC-eEEEE
Confidence 4445599999999999999999998765 88776
No 335
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=84.50 E-value=0.89 Score=56.77 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=28.5
Q ss_pred HHHHHHHHHhhc---CCcEEEEcCCCChHhHHHHHHHHHHHH
Q 001054 393 ASQVFAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHMAK 431 (1171)
Q Consensus 393 esQ~~AV~~aL~---~~lsLIqGPPGTGKTtTla~iI~~Llk 431 (1171)
+.+.+.+..++. ....||.||||||||+++..+...+..
T Consensus 192 ~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 192 EKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp HHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 344555555554 356799999999999998888877654
No 336
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=84.37 E-value=0.75 Score=51.68 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=31.7
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEc
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~A 441 (1171)
.++..|.|--|.|||||.+.+...|.+.++ |||++=
T Consensus 48 aKVIAIaGKGGVGKTTtavNLA~aLA~~Gk-kVllID 83 (314)
T 3fwy_A 48 AKVFAVYGKGGIGKSTTSSNLSAAFSILGK-RVLQIG 83 (314)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred ceEEEEECCCccCHHHHHHHHHHHHHHCCC-eEEEEe
Confidence 467788999999999999999999999886 888874
No 337
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=84.35 E-value=0.52 Score=49.02 Aligned_cols=25 Identities=24% Similarity=0.561 Sum_probs=20.3
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHMA 430 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~Ll 430 (1171)
.++.|.||+|+||||++..+...+-
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4678999999999999877766554
No 338
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=84.31 E-value=0.6 Score=48.65 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=17.9
Q ss_pred CcEEEEcCCCChHhHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVY 427 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~ 427 (1171)
++.+|.||.|+||||++..++.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999998766554
No 339
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=84.21 E-value=0.78 Score=48.11 Aligned_cols=34 Identities=35% Similarity=0.625 Sum_probs=28.0
Q ss_pred cEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEc
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~A 441 (1171)
+++..+..|+||||+++.++..|.+.+. +||++=
T Consensus 5 i~v~s~kgGvGKTt~a~~LA~~la~~g~-~VlliD 38 (237)
T 1g3q_A 5 ISIVSGKGGTGKTTVTANLSVALGDRGR-KVLAVD 38 (237)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHhcCC-eEEEEe
Confidence 4556778999999999999999988765 888764
No 340
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=84.20 E-value=0.72 Score=49.22 Aligned_cols=33 Identities=24% Similarity=0.451 Sum_probs=24.8
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEE
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ 440 (1171)
.+.+|.|+||+||||.+..+...|-. ...|+.+
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~--~~~~~~~ 59 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVK--DYDVIMT 59 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTT--TSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhc--CCCceee
Confidence 46789999999999998888776643 3356544
No 341
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=84.08 E-value=0.5 Score=48.70 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=17.2
Q ss_pred cEEEEcCCCChHhHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVY 427 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~ 427 (1171)
+..|.||+||||||++..+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999998776653
No 342
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=84.07 E-value=1.3 Score=46.93 Aligned_cols=43 Identities=21% Similarity=0.400 Sum_probs=30.5
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEE-cCcHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC-APSNVAV 447 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~-ApSN~AV 447 (1171)
..+.+|.|++|+||||.+..+..+|-..+...|.++ -|+....
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~ 46 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQL 46 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHH
Confidence 346788999999999999999888877664344433 4444333
No 343
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=83.93 E-value=0.88 Score=51.53 Aligned_cols=37 Identities=32% Similarity=0.326 Sum_probs=28.5
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcC
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP 442 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~Ap 442 (1171)
..++.|.|+||+||||++..++..+...+ .+|.+.+.
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~~~~~-g~v~i~~~ 91 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLLTAAG-HKVAVLAV 91 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTT-CCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhhCC-CEEEEEEE
Confidence 34688999999999999988887665443 47877763
No 344
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=83.89 E-value=0.86 Score=49.75 Aligned_cols=32 Identities=31% Similarity=0.562 Sum_probs=26.9
Q ss_pred EEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEE
Q 001054 408 SLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (1171)
Q Consensus 408 sLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ 440 (1171)
..|.|..|+||||+++.++..|.+.+. +||++
T Consensus 5 Iavs~KGGvGKTT~a~nLA~~La~~G~-rVlli 36 (289)
T 2afh_E 5 CAIYGKGGIGKSTTTQNLVAALAEMGK-KVMIV 36 (289)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred EEEeCCCcCcHHHHHHHHHHHHHHCCC-eEEEE
Confidence 344789999999999999999988765 88875
No 345
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=83.78 E-value=0.77 Score=49.31 Aligned_cols=31 Identities=26% Similarity=0.472 Sum_probs=26.2
Q ss_pred EEEcCCCChHhHHHHHHHHHHHHcCCCcEEEE
Q 001054 409 LIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (1171)
Q Consensus 409 LIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ 440 (1171)
.|.|..|+||||+++.++..|.+.+. +||++
T Consensus 5 ~vs~KGGvGKTT~a~nLA~~la~~G~-~Vlli 35 (269)
T 1cp2_A 5 AIYGKGGIGKSTTTQNLTSGLHAMGK-TIMVV 35 (269)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHTTTC-CEEEE
T ss_pred EEecCCCCcHHHHHHHHHHHHHHCCC-cEEEE
Confidence 44789999999999999999887655 88875
No 346
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=83.76 E-value=0.49 Score=49.10 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=21.7
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMA 430 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Ll 430 (1171)
..++.|.||+|+||||++..++..+.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45789999999999999988876543
No 347
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=83.68 E-value=0.94 Score=51.49 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=29.0
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcC
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP 442 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~Ap 442 (1171)
..+.|.|+||+||||++-.++..+...+ .+|.|++.
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~~~~-~~v~V~~~ 110 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLTERG-HKLSVLAV 110 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEEEC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhhhcC-CeEEEEee
Confidence 4578999999999999999988776654 47777764
No 348
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=83.47 E-value=0.8 Score=52.24 Aligned_cols=38 Identities=26% Similarity=0.409 Sum_probs=31.2
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHH--HcCCCcEEEEcCc
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMA--KQGQGQVLVCAPS 443 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Ll--k~~~~rILV~ApS 443 (1171)
..+.++.|..|+||||+++.++..+. ..+ .+||++.--
T Consensus 18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g-~~vllid~D 57 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQPN-EQFLLISTD 57 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHCTT-SCEEEEECC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCC-CeEEEEECC
Confidence 46889999999999999999999888 445 488777653
No 349
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=83.39 E-value=0.5 Score=56.57 Aligned_cols=21 Identities=43% Similarity=0.702 Sum_probs=18.1
Q ss_pred EEEEcCCCChHhHHHHHHHHH
Q 001054 408 SLIQGPPGTGKTVTSAAIVYH 428 (1171)
Q Consensus 408 sLIqGPPGTGKTtTla~iI~~ 428 (1171)
++|.||||||||+++..+...
T Consensus 67 vLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 799999999999988776654
No 350
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=83.38 E-value=0.77 Score=52.37 Aligned_cols=38 Identities=29% Similarity=0.464 Sum_probs=31.2
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHH--HcCCCcEEEEcCc
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMA--KQGQGQVLVCAPS 443 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Ll--k~~~~rILV~ApS 443 (1171)
..+.++.|-+|.||||+.+.++..|. +.++ |||++-.-
T Consensus 18 ~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~-rVLLvD~D 57 (354)
T 2woj_A 18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPNK-QFLLISTD 57 (354)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-CEEEEECC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCC-eEEEEECC
Confidence 45788899999999999999999998 5554 88887543
No 351
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=83.31 E-value=0.72 Score=47.18 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=19.5
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
++..|.|++||||||++..+...|
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 367899999999999887776544
No 352
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=83.17 E-value=1 Score=53.93 Aligned_cols=49 Identities=24% Similarity=0.293 Sum_probs=34.3
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKIS 455 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~ 455 (1171)
..+++|.|++|+||||++..++..+...+ .+++.+.+-+.. ..+..++.
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~~~G-~~vi~~~~ee~~-~~l~~~~~ 329 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENACANK-ERAILFAYEESR-AQLLRNAY 329 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHTTT-CCEEEEESSSCH-HHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhCC-CCEEEEEEeCCH-HHHHHHHH
Confidence 56899999999999999988887665543 367666664432 34555543
No 353
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=83.16 E-value=1.9 Score=44.66 Aligned_cols=67 Identities=19% Similarity=0.230 Sum_probs=38.0
Q ss_pred HHHHHHHHHhhc---CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEE--cCcHHHHHHHHHHHHhcCCeEEEe
Q 001054 393 ASQVFAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC--APSNVAVDQLAEKISATGLKVVRL 464 (1171)
Q Consensus 393 esQ~~AV~~aL~---~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~--ApSN~AVD~L~eRL~~~glkVVRl 464 (1171)
+.+.+.++..+. ....+|.|.+|+|||+++..++..+... .++.++ .+. ..+|. .++...+.+++.+
T Consensus 23 ~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~--~~~~~i~~d~~-~~~d~--~~~~~~~~~~~~~ 94 (226)
T 2hf9_A 23 KRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKDK--YKIACIAGDVI-AKFDA--ERMEKHGAKVVPL 94 (226)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTTT--CCEEEEEEETT-THHHH--HHHHTTTCEEEEE
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhccC--CeEEEEECCCC-CCccH--HHHHhcCCcEEEe
Confidence 344444444332 2346788999999999999988776443 244333 333 23342 2344445555544
No 354
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=82.97 E-value=0.82 Score=48.13 Aligned_cols=35 Identities=14% Similarity=0.353 Sum_probs=28.3
Q ss_pred cEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEc
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~A 441 (1171)
+.+..+-.|+||||+++.++..|.+....+||++=
T Consensus 7 I~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 41 (245)
T 3ea0_A 7 FGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVD 41 (245)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEE
T ss_pred EEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEE
Confidence 45677889999999999999999887234888874
No 355
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=82.92 E-value=1.2 Score=56.46 Aligned_cols=38 Identities=24% Similarity=0.435 Sum_probs=27.0
Q ss_pred HHHHHHHHhhc---CCcEEEEcCCCChHhHHHHHHHHHHHH
Q 001054 394 SQVFAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHMAK 431 (1171)
Q Consensus 394 sQ~~AV~~aL~---~~lsLIqGPPGTGKTtTla~iI~~Llk 431 (1171)
...+.+..++. .+..+|.||||||||+++..++..+..
T Consensus 177 ~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 177 EEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp HHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 33344444443 345799999999999998888877765
No 356
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=82.90 E-value=0.4 Score=60.54 Aligned_cols=21 Identities=48% Similarity=0.838 Sum_probs=17.7
Q ss_pred EEEEcCCCChHhHHHHHHHHH
Q 001054 408 SLIQGPPGTGKTVTSAAIVYH 428 (1171)
Q Consensus 408 sLIqGPPGTGKTtTla~iI~~ 428 (1171)
.|+.||||||||+++..++..
T Consensus 241 ILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 241 ILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp EEEECCTTSCHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 699999999999987766643
No 357
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=82.85 E-value=0.93 Score=47.36 Aligned_cols=32 Identities=31% Similarity=0.390 Sum_probs=27.0
Q ss_pred cEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEE
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ 440 (1171)
++++.+-.|+||||+++.++..|.+.+ +||++
T Consensus 3 I~v~s~KGGvGKTT~a~~LA~~la~~g--~Vlli 34 (209)
T 3cwq_A 3 ITVASFKGGVGKTTTAVHLSAYLALQG--ETLLI 34 (209)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHTTS--CEEEE
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHhcC--CEEEE
Confidence 456788999999999999999888765 88775
No 358
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=82.81 E-value=0.76 Score=56.06 Aligned_cols=34 Identities=29% Similarity=0.474 Sum_probs=24.7
Q ss_pred HHHHHHhhc-CCcEEEEcCCCChHhHHHHHHHHHH
Q 001054 396 VFAVKSVLQ-RPISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 396 ~~AV~~aL~-~~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
.+.|..++. ...++|.|||||||||++..+...+
T Consensus 50 l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 50 VEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred HhhccccccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 344444443 5688999999999999887776544
No 359
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=82.41 E-value=0.63 Score=49.97 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=18.4
Q ss_pred cEEEEcCCCChHhHHHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
+..|.|++||||||++..+...|
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 56799999999999877665543
No 360
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=82.37 E-value=0.85 Score=49.61 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=21.1
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
....+|.|++|+||||++..+...|
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 6678999999999999887776654
No 361
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=82.12 E-value=0.68 Score=53.84 Aligned_cols=38 Identities=21% Similarity=0.270 Sum_probs=26.6
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHc-----CCCcEEEEcC
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQ-----GQGQVLVCAP 442 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~-----~~~rILV~Ap 442 (1171)
..+++|.||||+||||++..++...+.. ...+++++..
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 4689999999999999998776544331 1235665544
No 362
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=82.00 E-value=0.83 Score=47.32 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=20.2
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
..++.|.||.|+||||++..+...+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3578999999999999988776543
No 363
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=81.75 E-value=1.1 Score=50.58 Aligned_cols=35 Identities=29% Similarity=0.365 Sum_probs=27.5
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEc
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~A 441 (1171)
.++.|.|+||+||||++..++..+...+. +|.++.
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~~~~~~-~v~v~~ 91 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLLIREGL-KVAVIA 91 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhcCC-eEEEEe
Confidence 45788999999999999988877766544 666654
No 364
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=81.38 E-value=0.73 Score=47.32 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=17.5
Q ss_pred cEEEEcCCCChHhHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVY 427 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~ 427 (1171)
...|.|++||||||++..+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 467999999999998776654
No 365
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=81.22 E-value=0.97 Score=46.97 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=21.1
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHMA 430 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~Ll 430 (1171)
..+.|.||.|+||||++..++..+.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3578999999999999988877665
No 366
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=81.18 E-value=0.76 Score=50.29 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=17.9
Q ss_pred cEEEEcCCCChHhHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVY 427 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~ 427 (1171)
+.+|.|+|||||||++..+..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999998777664
No 367
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=81.17 E-value=1.1 Score=56.15 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=20.3
Q ss_pred cEEEEcCCCChHhHHHHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHMA 430 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~Ll 430 (1171)
.+|+.||||||||+++..+...+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~ 546 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIF 546 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 489999999999999887776653
No 368
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=80.74 E-value=0.88 Score=46.97 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=19.1
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
.++.|.||.|+||||++..+...+
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999887666543
No 369
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=80.49 E-value=0.78 Score=47.38 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=17.8
Q ss_pred CcEEEEcCCCChHhHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVY 427 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~ 427 (1171)
.+..|.|++|+||||++..+..
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999998766553
No 370
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=80.29 E-value=0.94 Score=52.24 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=30.2
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcC
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP 442 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~Ap 442 (1171)
.+.++.|..|+||||+++.++..+.+.+. +||++..
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~g~-~vllvd~ 38 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQGK-RVLLAGL 38 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHTTC-CEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCC-CeEEEeC
Confidence 35788999999999999999999988876 7776654
No 371
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=80.25 E-value=0.6 Score=57.01 Aligned_cols=20 Identities=40% Similarity=0.438 Sum_probs=16.9
Q ss_pred cEEEEcCCCChHhHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIV 426 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI 426 (1171)
..||.||||||||+++..+.
T Consensus 329 ~vLL~GppGtGKT~LAr~la 348 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFIS 348 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSS
T ss_pred ceEEECCCchHHHHHHHHHH
Confidence 68999999999999766554
No 372
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=80.22 E-value=1.9 Score=47.64 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=26.5
Q ss_pred cEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEE
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ 440 (1171)
+.+..+-+|.||||+++.++..|.+.+. +||++
T Consensus 95 I~vts~kgG~GKTtva~nLA~~lA~~G~-rVLLI 127 (286)
T 3la6_A 95 LMMTGVSPSIGMTFVCANLAAVISQTNK-RVLLI 127 (286)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHHHTTTC-CEEEE
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhCCC-CEEEE
Confidence 3445567999999999999998887765 88877
No 373
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=80.22 E-value=1.3 Score=50.78 Aligned_cols=51 Identities=16% Similarity=0.166 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHhhc-----------CCcEEEEcCCCChHhHHHHHHHHHHHH-----cCCCcEEEEc
Q 001054 391 LNASQVFAVKSVLQ-----------RPISLIQGPPGTGKTVTSAAIVYHMAK-----QGQGQVLVCA 441 (1171)
Q Consensus 391 LNesQ~~AV~~aL~-----------~~lsLIqGPPGTGKTtTla~iI~~Llk-----~~~~rILV~A 441 (1171)
++.+|...+...+. .-++++.|-.|+||||+.+.++..|.. ....+||++=
T Consensus 84 ~~~~~i~~~~~~~~~~~~~~~~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD 150 (398)
T 3ez2_A 84 MSIQNIIDIYEHRGVPKYRDRYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVID 150 (398)
T ss_dssp BCHHHHHHHHHHTTCCCGGGTCCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEE
T ss_pred CCHHHHHHHHHHhcccccCcCCCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEe
Confidence 46778777776542 124666799999999999999999885 2234887763
No 374
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=80.18 E-value=0.95 Score=45.01 Aligned_cols=25 Identities=36% Similarity=0.514 Sum_probs=21.5
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
.++.+|.||.|+|||+++-++...|
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999988877655
No 375
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=80.16 E-value=0.86 Score=45.89 Aligned_cols=25 Identities=28% Similarity=0.557 Sum_probs=20.7
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
.++.+|.|+-|+|||+++-+|...|
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999987766543
No 376
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=79.96 E-value=1 Score=51.96 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=20.4
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYH 428 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~ 428 (1171)
..+.+|.|||||||||++..+...
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 458899999999999998877754
No 377
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=79.86 E-value=1 Score=48.41 Aligned_cols=34 Identities=32% Similarity=0.496 Sum_probs=27.5
Q ss_pred cEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEc
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~A 441 (1171)
+++..+-.|+||||+++.++..|.+.+. +||++=
T Consensus 9 I~v~s~kGGvGKTt~a~~LA~~la~~g~-~VlliD 42 (257)
T 1wcv_1 9 IALANQKGGVGKTTTAINLAAYLARLGK-RVLLVD 42 (257)
T ss_dssp EEECCSSCCHHHHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHHCCC-CEEEEE
Confidence 3445678899999999999999988765 888863
No 378
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=79.77 E-value=1 Score=48.56 Aligned_cols=24 Identities=29% Similarity=0.580 Sum_probs=19.5
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
-+..|.||+|+||||++..+...|
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999887776554
No 379
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=79.71 E-value=1.3 Score=50.73 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=29.1
Q ss_pred cEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcC
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP 442 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~Ap 442 (1171)
+.++.|-.|+||||+++.++..|.+.+. +||++-.
T Consensus 146 Iav~s~KGGvGKTT~a~nLA~~La~~g~-rVlliD~ 180 (373)
T 3fkq_A 146 VIFTSPCGGVGTSTVAAACAIAHANMGK-KVFYLNI 180 (373)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHHHTC-CEEEEEC
T ss_pred EEEECCCCCChHHHHHHHHHHHHHhCCC-CEEEEEC
Confidence 4566679999999999999999988765 8888753
No 380
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=79.60 E-value=1.6 Score=49.37 Aligned_cols=34 Identities=26% Similarity=0.284 Sum_probs=23.0
Q ss_pred cEEEEcCCCChHhHHHHHHHHHHHHc--CCCcEEEEc
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHMAKQ--GQGQVLVCA 441 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~Llk~--~~~rILV~A 441 (1171)
++.|.||+|+||||++..+.. ++.. ...+|.++.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~-ll~~~~~~~~v~~i~ 129 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKA-LLSRWPDHPNVEVIT 129 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHH-HHTTSTTCCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-HhcccCCCCeEEEEe
Confidence 678999999999999866554 4432 123455544
No 381
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=79.55 E-value=2.3 Score=49.44 Aligned_cols=62 Identities=19% Similarity=0.202 Sum_probs=41.3
Q ss_pred HHHHHHHHHhhc---CCcEEEEcCCCChHhHHHHHHHHHHHHcCCC-c--EEEEcCcHHHHHHHHHHH
Q 001054 393 ASQVFAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHMAKQGQG-Q--VLVCAPSNVAVDQLAEKI 454 (1171)
Q Consensus 393 esQ~~AV~~aL~---~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~-r--ILV~ApSN~AVD~L~eRL 454 (1171)
+-=.+||...+. ..-.+|.||+|+|||+++..++..+.+.... . ++.|.-...-+.++.+.+
T Consensus 159 ~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~~ 226 (422)
T 3ice_A 159 DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV 226 (422)
T ss_dssp HHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTC
T ss_pred cccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHHh
Confidence 445677776654 4567999999999999999888777654332 2 344455555565555433
No 382
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=79.37 E-value=0.97 Score=48.60 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=26.7
Q ss_pred cEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEE
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ 440 (1171)
+.+..+-.|+||||+++.++..|. .+ .+||++
T Consensus 30 I~v~s~kGGvGKTT~a~~LA~~la-~g-~~Vlli 61 (267)
T 3k9g_A 30 ITIASIKGGVGKSTSAIILATLLS-KN-NKVLLI 61 (267)
T ss_dssp EEECCSSSSSCHHHHHHHHHHHHT-TT-SCEEEE
T ss_pred EEEEeCCCCchHHHHHHHHHHHHH-CC-CCEEEE
Confidence 455678999999999999999988 65 488876
No 383
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=79.34 E-value=1.1 Score=46.61 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=18.1
Q ss_pred cEEEEcCCCChHhHHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYH 428 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~ 428 (1171)
+..|.|++||||||++..+...
T Consensus 14 iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999988776654
No 384
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=79.21 E-value=1.2 Score=46.97 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=20.1
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYH 428 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~ 428 (1171)
..+++|.||.|+||||++..++..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 567899999999999988777643
No 385
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=79.14 E-value=2.3 Score=50.86 Aligned_cols=38 Identities=26% Similarity=0.347 Sum_probs=28.0
Q ss_pred CCcEEEEcCCCChHhHHHHHHH-HHHHHcCCCcEEEEcC
Q 001054 405 RPISLIQGPPGTGKTVTSAAIV-YHMAKQGQGQVLVCAP 442 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI-~~Llk~~~~rILV~Ap 442 (1171)
..+++|.||+|+||||++..++ .-+.......|.+...
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~ 77 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE 77 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 4689999999999999998863 4555534446666543
No 386
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=79.01 E-value=0.91 Score=51.73 Aligned_cols=33 Identities=36% Similarity=0.481 Sum_probs=27.8
Q ss_pred cEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEE
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ 440 (1171)
+++..+-.|+||||+++.++..|.+.+. |||++
T Consensus 4 Iav~s~KGGvGKTT~a~nLA~~LA~~G~-rVLlI 36 (361)
T 3pg5_A 4 ISFFNNKGGVGKTTLSTNVAHYFALQGK-RVLYV 36 (361)
T ss_dssp EEBCCSSCCHHHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHhCCC-cEEEE
Confidence 3556789999999999999999988665 88887
No 387
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=78.93 E-value=1.3 Score=48.51 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=27.3
Q ss_pred cEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEE
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ 440 (1171)
+++..+-.|+||||+.+.++..|.+.+. +||++
T Consensus 7 I~v~s~KGGvGKTT~a~nLA~~La~~G~-~Vlli 39 (286)
T 2xj4_A 7 IVVGNEKGGAGKSTIAVHLVTALLYGGA-KVAVI 39 (286)
T ss_dssp EEECCSSSCTTHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHCCC-cEEEE
Confidence 4555688999999999999999988765 77775
No 388
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=78.90 E-value=0.69 Score=58.43 Aligned_cols=21 Identities=48% Similarity=0.781 Sum_probs=17.2
Q ss_pred EEEEcCCCChHhHHHHHHHHH
Q 001054 408 SLIQGPPGTGKTVTSAAIVYH 428 (1171)
Q Consensus 408 sLIqGPPGTGKTtTla~iI~~ 428 (1171)
+|+.||||||||.++.+++..
T Consensus 514 vLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 514 VLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CEEESSTTSSHHHHHHHHHHT
T ss_pred EEEecCCCCCchHHHHHHHHH
Confidence 699999999999877666543
No 389
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=78.87 E-value=1.1 Score=55.89 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=19.5
Q ss_pred cEEEEcCCCChHhHHHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
.+||.||||||||+++..+...+
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 47999999999999888776655
No 390
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=78.77 E-value=0.99 Score=45.92 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=17.2
Q ss_pred cEEEEcCCCChHhHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVY 427 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~ 427 (1171)
+..|.|++||||||++..+..
T Consensus 10 ~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999998766554
No 391
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=78.74 E-value=1.4 Score=52.82 Aligned_cols=36 Identities=31% Similarity=0.329 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhc-----CCcEEEEcCCCChHhHHHHHHHHH
Q 001054 393 ASQVFAVKSVLQ-----RPISLIQGPPGTGKTVTSAAIVYH 428 (1171)
Q Consensus 393 esQ~~AV~~aL~-----~~lsLIqGPPGTGKTtTla~iI~~ 428 (1171)
+...+.+...+. .++++|+|++|.|||+++.+++..
T Consensus 130 ~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 130 KKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp HHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhc
Confidence 455666766664 457899999999999999887643
No 392
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=78.34 E-value=0.94 Score=51.24 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=19.8
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
.+.+|.||+|||||+++..++..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 367899999999999887776543
No 393
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=78.32 E-value=1.5 Score=59.55 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=37.2
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEK 453 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eR 453 (1171)
..+++|.|+||||||+++..++...++.+. +++.++.....-+.+.++
T Consensus 34 G~i~lI~G~pGsGKT~LAlqla~~~~~~G~-~vlYI~te~~~~~l~~~~ 81 (1706)
T 3cmw_A 34 GRIVEIYGPESSGKTTLTLQVIAAAQREGK-TCAFIDAEHALDPIYARK 81 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEECTTSCCCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhCCC-ceEEEEecCccHHHHHHh
Confidence 458999999999999999999888777654 888887766544444443
No 394
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=78.19 E-value=0.84 Score=48.12 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCChHhHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIV 426 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI 426 (1171)
..++.|.||.|+||||++..+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCEEEEECSCC----CHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4578899999999999987766
No 395
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=77.88 E-value=2.6 Score=48.97 Aligned_cols=38 Identities=21% Similarity=0.256 Sum_probs=29.2
Q ss_pred HHHHHHhhc---CCcEEEEcCCCChHhHHHHHHHHHHHHcC
Q 001054 396 VFAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHMAKQG 433 (1171)
Q Consensus 396 ~~AV~~aL~---~~lsLIqGPPGTGKTtTla~iI~~Llk~~ 433 (1171)
.+||...+. ..-.+|.|+||||||+++..|+.++.+..
T Consensus 163 iraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~ 203 (427)
T 3l0o_A 163 TRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENH 203 (427)
T ss_dssp HHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHC
T ss_pred chhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcC
Confidence 467776643 34579999999999999988888776543
No 396
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=77.58 E-value=1.3 Score=50.43 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=21.4
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
..++.|.||||+||||++..++..+
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999988887654
No 397
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=77.30 E-value=1.2 Score=46.24 Aligned_cols=20 Identities=30% Similarity=0.513 Sum_probs=16.8
Q ss_pred cEEEEcCCCChHhHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIV 426 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI 426 (1171)
+..|.|++||||||++..+.
T Consensus 6 ~I~i~G~~GSGKST~~~~L~ 25 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFA 25 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999876654
No 398
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=77.30 E-value=1.5 Score=49.07 Aligned_cols=31 Identities=29% Similarity=0.563 Sum_probs=24.7
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEE
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLV 439 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV 439 (1171)
...+.|.||+|+||||++..++..+ .++|++
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~----~G~I~~ 156 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL----GGSVLS 156 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH----TCEEEC
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc----CceEEE
Confidence 5688999999999999988877655 347754
No 399
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=77.26 E-value=1.2 Score=46.11 Aligned_cols=26 Identities=15% Similarity=0.386 Sum_probs=21.3
Q ss_pred cCCcEEEEcCCCChHhHHHHHHHHHH
Q 001054 404 QRPISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 404 ~~~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
...++.|.||.|+||||++..+...+
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 36789999999999999987776543
No 400
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=77.25 E-value=1.3 Score=60.16 Aligned_cols=44 Identities=18% Similarity=0.265 Sum_probs=35.3
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQ 449 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~ 449 (1171)
..+++|.|+||+|||+++..++....+.+. ++++++.-...-..
T Consensus 383 G~lilI~G~pGsGKTtLaLq~a~~~~~~G~-~vlyis~E~s~~~~ 426 (1706)
T 3cmw_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQREGK-TCAFIDAEHALDPI 426 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEECTTSCCCHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CeEEEEccCchHHH
Confidence 568999999999999999999988887654 88888776544433
No 401
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=76.98 E-value=1.4 Score=47.03 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=18.9
Q ss_pred cEEEEcCCCChHhHHHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
++.|.||.|+||||++..+...+
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57799999999999987766544
No 402
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=76.76 E-value=2.5 Score=45.17 Aligned_cols=41 Identities=22% Similarity=0.333 Sum_probs=29.5
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHHHH-cCCCcEEE-E-cCcHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHMAK-QGQGQVLV-C-APSNVAV 447 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~Llk-~~~~rILV-~-ApSN~AV 447 (1171)
.+.+|.|++|+||||.+..+...|-. .+. +|++ + -|.....
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~~~g~-~v~~~treP~~t~~ 65 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSEIYGV-NNVVLTREPGGTLL 65 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCG-GGEEEEESSCSSHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhccCc-eeeEeeeCCCCChH
Confidence 36778999999999999998888876 554 4444 3 4444333
No 403
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=76.74 E-value=1.3 Score=46.18 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=21.9
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMA 430 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Ll 430 (1171)
.++.+|.||-|+|||+++-+|...|.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 56899999999999999887766554
No 404
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=76.51 E-value=1.4 Score=46.38 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=23.9
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEE
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLV 439 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV 439 (1171)
..++.|.||.|+||||++..++..+ + +.|.+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~---p-G~i~~ 53 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF---P-NYFYF 53 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS---T-TTEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC---C-CcEEE
Confidence 5688999999999999988776643 2 45665
No 405
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=76.24 E-value=1.4 Score=47.52 Aligned_cols=25 Identities=28% Similarity=0.602 Sum_probs=19.9
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
..+..|.||+|+||||++..+...|
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 3567899999999999887776443
No 406
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=75.88 E-value=1.4 Score=55.85 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=19.9
Q ss_pred cEEEEcCCCChHhHHHHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHMA 430 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~Ll 430 (1171)
.+||.||||||||+++..+...+.
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 579999999999998877766554
No 407
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=75.46 E-value=3.6 Score=42.78 Aligned_cols=33 Identities=21% Similarity=0.403 Sum_probs=26.3
Q ss_pred EEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEc
Q 001054 408 SLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (1171)
Q Consensus 408 sLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~A 441 (1171)
.+|-|+-|+||||.+..+..+|.+.+. +|+++.
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~-~v~~tr 35 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGK-KVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC-cEEEEE
Confidence 468899999999999988888877765 555543
No 408
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=75.43 E-value=0.93 Score=52.75 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=19.0
Q ss_pred CCcEEEEcCCCChHhHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVY 427 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~ 427 (1171)
..+.+|.|+||+||||++..++.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999998877654
No 409
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=75.30 E-value=1.4 Score=46.72 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=19.6
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYH 428 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~ 428 (1171)
....+|.||+|+|||+++.+++..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 445799999999999988777643
No 410
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=75.17 E-value=1.5 Score=46.60 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=20.2
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYH 428 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~ 428 (1171)
..+++|.||.|+||||++..+...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 568899999999999988776653
No 411
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=74.95 E-value=1.7 Score=45.99 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=19.3
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
.+..|.|++||||||++..+...|
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999887766544
No 412
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=74.87 E-value=1.7 Score=48.29 Aligned_cols=25 Identities=36% Similarity=0.672 Sum_probs=20.2
Q ss_pred cEEEEcCCCChHhHHHHHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHMAK 431 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~Llk 431 (1171)
+..|.|++|+||||++..+...+-.
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5679999999999998777666543
No 413
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=74.85 E-value=1.4 Score=50.13 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=20.3
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
.+.+|.||+|+|||+++..++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 467899999999999988877654
No 414
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=74.75 E-value=1.4 Score=48.51 Aligned_cols=20 Identities=20% Similarity=0.395 Sum_probs=17.4
Q ss_pred cEEEEcCCCChHhHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIV 426 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI 426 (1171)
+..|.|++||||||++..+.
T Consensus 77 iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999887766
No 415
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=74.20 E-value=1.4 Score=49.40 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=24.5
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcC
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAP 442 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~Ap 442 (1171)
++++|.|+-|+||||++..++... ...+|.|+.+
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~---~~~~~aVi~~ 38 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ---HGYKIAVIEN 38 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC---CCCCEEEECS
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc---CCCcEEEEEe
Confidence 578999999999999987766432 2335555554
No 416
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=73.43 E-value=1.3 Score=49.93 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=20.6
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
.++.+|.||.|+|||+++..++..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4567899999999999988877543
No 417
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=73.36 E-value=1.1 Score=56.56 Aligned_cols=22 Identities=45% Similarity=0.712 Sum_probs=17.9
Q ss_pred CcEEEEcCCCChHhHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVY 427 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~ 427 (1171)
..+||.||||||||+++..+..
T Consensus 239 ~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 239 RGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CEEEECSCTTSSHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 3579999999999988766654
No 418
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=73.32 E-value=1.1 Score=56.70 Aligned_cols=24 Identities=42% Similarity=0.600 Sum_probs=19.4
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
..+|+.||||||||+++..+...+
T Consensus 512 ~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 512 KGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred ceeEEECCCCCCHHHHHHHHHHHh
Confidence 347899999999999877776554
No 419
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=73.15 E-value=1.8 Score=44.94 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=18.0
Q ss_pred cEEEEcCCCChHhHHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYH 428 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~ 428 (1171)
+..|.|++||||||++..+...
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999987666543
No 420
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=73.05 E-value=2.1 Score=48.75 Aligned_cols=47 Identities=17% Similarity=0.082 Sum_probs=30.9
Q ss_pred HHHHHHhhc---CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCc
Q 001054 396 VFAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPS 443 (1171)
Q Consensus 396 ~~AV~~aL~---~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApS 443 (1171)
..||..++. .....|.||.|+||||++..++..+ +-....|.++...
T Consensus 59 ~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~-~~~~g~i~~~G~~ 108 (347)
T 2obl_A 59 VRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGA-SADIIVLALIGER 108 (347)
T ss_dssp CHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHS-CCSEEEEEEESCC
T ss_pred CEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCC-CCCEEEEEEeccc
Confidence 357777654 4688999999999999977666543 2222245555444
No 421
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=72.99 E-value=1.9 Score=48.25 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=19.2
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
.++.|.||.|+||||++..+...+
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhhc
Confidence 367899999999999887665544
No 422
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=72.85 E-value=1.8 Score=46.67 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=18.0
Q ss_pred EEEEcCCCChHhHHHHHHHHHH
Q 001054 408 SLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 408 sLIqGPPGTGKTtTla~iI~~L 429 (1171)
.-|.|+||+||||.+..+...+
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred eeeECCCCCCHHHHHHHHHHHh
Confidence 4589999999999888776654
No 423
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=72.47 E-value=1.3 Score=51.03 Aligned_cols=49 Identities=18% Similarity=0.273 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHhhc-----------CCcEEEEcCCCChHhHHHHHHHHHHH------HcCCCcEEEE
Q 001054 391 LNASQVFAVKSVLQ-----------RPISLIQGPPGTGKTVTSAAIVYHMA------KQGQGQVLVC 440 (1171)
Q Consensus 391 LNesQ~~AV~~aL~-----------~~lsLIqGPPGTGKTtTla~iI~~Ll------k~~~~rILV~ 440 (1171)
++.+|...+..... .-++++.|-.|+||||+.+.++..|. +.+. +||++
T Consensus 87 ~~~~~v~~~~~~~~~~~~r~~~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~-rVlli 152 (403)
T 3ez9_A 87 LTIQNVIDIYAHRKIPKYRDIHKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDL-RILVI 152 (403)
T ss_dssp BCHHHHHHHHHHTTCCCHHHHSCSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCC-CEEEE
T ss_pred cCHHHHHHHHHHhccCCcCCCCCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCC-eEEEE
Confidence 57788888875521 12566779999999999999999887 3444 77776
No 424
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=72.28 E-value=1.9 Score=47.84 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=24.2
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHHHH-cCCCcEEEEc
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHMAK-QGQGQVLVCA 441 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~Llk-~~~~rILV~A 441 (1171)
.++.|.||.|+||||++..+...+-. -....|.++.
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~ 117 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELIT 117 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEe
Confidence 36789999999999998766654421 2234576643
No 425
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=72.24 E-value=1.3 Score=50.48 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=20.1
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
.+.+|.||.|||||+++..++..+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 478999999999999888877543
No 426
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=72.12 E-value=1.6 Score=46.24 Aligned_cols=23 Identities=17% Similarity=0.138 Sum_probs=19.2
Q ss_pred cEEEEcCCCChHhHHHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
+.+|.|++|+||||.+..+..+|
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 56899999999999887777654
No 427
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=72.01 E-value=2.1 Score=49.08 Aligned_cols=22 Identities=23% Similarity=0.591 Sum_probs=18.6
Q ss_pred EEEEcCCCChHhHHHHHHHHHH
Q 001054 408 SLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 408 sLIqGPPGTGKTtTla~iI~~L 429 (1171)
.+|.|+||+||||++..++..|
T Consensus 27 i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 27 VILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7899999999999887776554
No 428
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=71.71 E-value=2 Score=51.49 Aligned_cols=44 Identities=20% Similarity=0.258 Sum_probs=29.6
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKIS 455 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~ 455 (1171)
.+.++.|.||+||||+...+...|-.... ...++. +|++++++.
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~-d~~v~s-----~D~~r~~~~ 79 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGV-PTKVFN-----VGEYRREAV 79 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTC-CEEEEE-----HHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCC-CeEEec-----ccHHHHHhc
Confidence 36789999999999999888877644332 333333 456665553
No 429
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=71.67 E-value=2.1 Score=45.50 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=21.6
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMA 430 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Ll 430 (1171)
..+.+|.|++|+||||.+..+..+|-
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34678999999999999888887663
No 430
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=71.48 E-value=1.5 Score=48.62 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=17.4
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHMA 430 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~Ll 430 (1171)
.+..|.||+|+||||++..+...+-
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578999999999999887776553
No 431
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=71.34 E-value=1.6 Score=44.57 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=21.9
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHHHHc
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHMAKQ 432 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~Llk~ 432 (1171)
..+.|.|+.|+||||++..++..+-..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 457899999999999988887766554
No 432
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=71.29 E-value=1.7 Score=48.90 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=20.1
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
.+.+|.||.|+|||+++..++..+
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCccCHHHHHHHHHHhC
Confidence 467899999999999988887653
No 433
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=70.90 E-value=2.8 Score=57.68 Aligned_cols=41 Identities=20% Similarity=0.328 Sum_probs=33.0
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVA 446 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~A 446 (1171)
..+++|.||||+|||+++..++..+.+.+. +++++..-...
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~~~a~~G~-~vlyis~E~s~ 423 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQREGK-TCAFIDAEHAL 423 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTC-CEEEECTTSCC
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhcCC-eEEEEEcCCCH
Confidence 468999999999999999999988876544 78777665433
No 434
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=70.16 E-value=2.1 Score=49.88 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=20.7
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
.+.+|.||.|+|||+++..++..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 467899999999999988887665
No 435
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=70.11 E-value=3.1 Score=49.35 Aligned_cols=59 Identities=15% Similarity=0.134 Sum_probs=38.1
Q ss_pred HHHHhh---cCCcEEEEcCCCChHhHHHHHHHHHHHHcCC-Cc-EEEEcCcHHHHHHHHHHHHh
Q 001054 398 AVKSVL---QRPISLIQGPPGTGKTVTSAAIVYHMAKQGQ-GQ-VLVCAPSNVAVDQLAEKISA 456 (1171)
Q Consensus 398 AV~~aL---~~~lsLIqGPPGTGKTtTla~iI~~Llk~~~-~r-ILV~ApSN~AVD~L~eRL~~ 456 (1171)
+|.... .....+|.|++|+|||+++..++........ -. ++.+.--..-+.++.+.+.+
T Consensus 141 ~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~iGerttev~el~~~l~~ 204 (473)
T 1sky_E 141 VVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYHEMKD 204 (473)
T ss_dssp HHHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHHH
T ss_pred HHHHHhhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEeeeccCchHHHHHHHHhhh
Confidence 555443 3566899999999999999999887765422 12 23334444555566665544
No 436
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=69.60 E-value=3.7 Score=49.71 Aligned_cols=35 Identities=31% Similarity=0.470 Sum_probs=30.2
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEE
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ 440 (1171)
..+.++.|.+|+||||+++.++..|.+.+. +||++
T Consensus 327 ~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~-~vllv 361 (589)
T 1ihu_A 327 HGLIMLMGKGGVGKTTMAAAIAVRLADMGF-DVHLT 361 (589)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred CeEEEEecCCCCChhhHHHHHHHHHHHCCC-cEEEE
Confidence 346788999999999999999999988875 88876
No 437
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=69.54 E-value=4.8 Score=48.63 Aligned_cols=41 Identities=17% Similarity=0.312 Sum_probs=29.0
Q ss_pred cEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEK 453 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eR 453 (1171)
+.+|.|++|+||||++..+...|-..+. ++.++. .|.+++.
T Consensus 374 ~I~l~G~~GsGKSTia~~La~~L~~~G~-~~~~ld-----~D~ir~~ 414 (546)
T 2gks_A 374 CVWLTGLPCAGKSTIAEILATMLQARGR-KVTLLD-----GDVVRTH 414 (546)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEEC-----HHHHHHH
T ss_pred EEEccCCCCCCHHHHHHHHHHHhhhcCC-eEEEEC-----chHhhhh
Confidence 5678999999999988888777665553 555554 4555443
No 438
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=69.52 E-value=2.5 Score=42.64 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=21.4
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
..++.|.||-|+||||++..++..+
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4578899999999999988887765
No 439
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=69.38 E-value=2.5 Score=48.20 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=20.8
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYH 428 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~ 428 (1171)
..+++|.||.|+||||++..++..
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 568999999999999998887654
No 440
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=69.13 E-value=2.1 Score=53.38 Aligned_cols=71 Identities=17% Similarity=0.173 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhcCCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHh----cCCeEEEecc
Q 001054 393 ASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISA----TGLKVVRLCA 466 (1171)
Q Consensus 393 esQ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~----~glkVVRlg~ 466 (1171)
+-|....-...... +..=.-|+|||.+++.-++ |.......|.|+|+|.-.|.+-.+-+.. .|+++.-+..
T Consensus 78 dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~-lnAL~G~~vhVvT~ndyLA~rdae~m~~l~~~Lglsvg~i~~ 152 (822)
T 3jux_A 78 DVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIY-LNALIGKGVHLVTVNDYLARRDALWMGPVYLFLGLRVGVINS 152 (822)
T ss_dssp HHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHH-HHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEEET
T ss_pred HHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHH-HHHhcCCceEEEeccHHHHHhHHHHHHHHHHHhCCEEEEEcC
Confidence 45555444332222 5677799999997654443 3333445899999999888766665543 5777665544
No 441
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=69.01 E-value=5.4 Score=47.41 Aligned_cols=62 Identities=18% Similarity=0.163 Sum_probs=43.4
Q ss_pred HHHHHHhhc---CCcEEEEcCCCChHhHHHHHHHHHHHHcCCC--cEEEEcCcHHHHHHHHHHHHhc
Q 001054 396 VFAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHMAKQGQG--QVLVCAPSNVAVDQLAEKISAT 457 (1171)
Q Consensus 396 ~~AV~~aL~---~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~--rILV~ApSN~AVD~L~eRL~~~ 457 (1171)
.+||...+. ..-.+|.|++|+|||+++..++....+.... =++.|.-...-+.++.+.+.+.
T Consensus 141 ir~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 141 IKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp CHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred eEEEecccccccCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 367776643 3457899999999999999999876554221 2334556677777787777654
No 442
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=68.91 E-value=3.6 Score=45.61 Aligned_cols=31 Identities=23% Similarity=0.438 Sum_probs=25.8
Q ss_pred HHHHHHhhcCCcEEEEcCCCChHhHHHHHHH
Q 001054 396 VFAVKSVLQRPISLIQGPPGTGKTVTSAAIV 426 (1171)
Q Consensus 396 ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI 426 (1171)
.+.+...+...++.|.||+|+||||++-.++
T Consensus 156 i~~L~~~l~G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLEGFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhccCcEEEEECCCCCCHHHHHHHHH
Confidence 4556666778889999999999999988776
No 443
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=68.69 E-value=5 Score=42.06 Aligned_cols=34 Identities=21% Similarity=0.407 Sum_probs=25.1
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEc
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCA 441 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~A 441 (1171)
.+.+|-|+.|+||||.+..+..+|. .+ .+++++.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~-~~-~~v~~~~ 36 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV-KD-YDVIMTR 36 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT-TT-SCEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH-CC-CCEEEee
Confidence 3667899999999999888877774 33 3555553
No 444
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=68.19 E-value=4.1 Score=50.02 Aligned_cols=50 Identities=18% Similarity=0.188 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHh---hcCCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEE
Q 001054 390 ELNASQVFAVKSV---LQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (1171)
Q Consensus 390 ~LNesQ~~AV~~a---L~~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ 440 (1171)
..+.+++++...- ....+.+|.|.|||||||++..+...|...+. +++.+
T Consensus 34 ~v~~~~r~~~~~~~~~~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~-~~v~l 86 (630)
T 1x6v_B 34 HVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGI-PCYTL 86 (630)
T ss_dssp CCCHHHHHHHSSSSSSCCCEEEEEECSTTSSHHHHHHHHHHHHHHTTC-CEEEE
T ss_pred CCCHHHHHHHhCCCccCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC-eEEEe
Confidence 3566666664321 11235789999999999999888887765443 44333
No 445
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=68.10 E-value=3.3 Score=58.75 Aligned_cols=30 Identities=27% Similarity=0.504 Sum_probs=22.3
Q ss_pred HHHhhc-CCcEEEEcCCCChHhHHHHHHHHH
Q 001054 399 VKSVLQ-RPISLIQGPPGTGKTVTSAAIVYH 428 (1171)
Q Consensus 399 V~~aL~-~~lsLIqGPPGTGKTtTla~iI~~ 428 (1171)
+..++. ...+|+.||||||||+++..++..
T Consensus 1260 l~~~l~~~~~vLL~GPpGtGKT~la~~~l~~ 1290 (2695)
T 4akg_A 1260 FYDLLNSKRGIILCGPPGSGKTMIMNNALRN 1290 (2695)
T ss_dssp HHHHHHHTCEEEEECSTTSSHHHHHHHHHHS
T ss_pred HHHHHHCCCeEEEECCCCCCHHHHHHHHHhc
Confidence 444443 567899999999999988666543
No 446
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=67.40 E-value=3.9 Score=46.80 Aligned_cols=30 Identities=27% Similarity=0.437 Sum_probs=23.2
Q ss_pred HHHHHhhcCCcEEEEcCCCChHhHHHHHHH
Q 001054 397 FAVKSVLQRPISLIQGPPGTGKTVTSAAIV 426 (1171)
Q Consensus 397 ~AV~~aL~~~lsLIqGPPGTGKTtTla~iI 426 (1171)
+.|...+...++.|.||+|+||||++-.++
T Consensus 207 ~~L~~~~~G~~~~lvG~sG~GKSTLln~L~ 236 (358)
T 2rcn_A 207 KPLEEALTGRISIFAGQSGVGKSSLLNALL 236 (358)
T ss_dssp HHHHHHHTTSEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEECCCCccHHHHHHHHh
Confidence 344445567789999999999999886665
No 447
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=67.36 E-value=2.9 Score=40.15 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=16.4
Q ss_pred EEEEcCCCChHhHHHHHHH
Q 001054 408 SLIQGPPGTGKTVTSAAIV 426 (1171)
Q Consensus 408 sLIqGPPGTGKTtTla~iI 426 (1171)
.+|.|++|+|||+++..++
T Consensus 4 i~v~G~~~~GKSsli~~l~ 22 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLL 22 (161)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5899999999999877665
No 448
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=67.12 E-value=2.3 Score=47.98 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=20.6
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYH 428 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~ 428 (1171)
..+++|.||.|+||||++..++..
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 678999999999999988777654
No 449
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=66.94 E-value=2.9 Score=42.46 Aligned_cols=20 Identities=20% Similarity=0.335 Sum_probs=16.7
Q ss_pred EEEEcCCCChHhHHHHHHHH
Q 001054 408 SLIQGPPGTGKTVTSAAIVY 427 (1171)
Q Consensus 408 sLIqGPPGTGKTtTla~iI~ 427 (1171)
++|.|++|+||||++..++.
T Consensus 8 v~lvG~~g~GKSTLl~~l~~ 27 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFTR 27 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHhc
Confidence 57999999999998776653
No 450
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=66.50 E-value=2.9 Score=47.70 Aligned_cols=26 Identities=31% Similarity=0.606 Sum_probs=21.4
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMA 430 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Ll 430 (1171)
.++++|.||-|+||||++-.|...|.
T Consensus 23 ~g~~~i~G~NGaGKTTll~ai~~al~ 48 (365)
T 3qf7_A 23 SGITVVEGPNGAGKSSLFEAISFALF 48 (365)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999877665554
No 451
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=66.19 E-value=4.4 Score=37.86 Aligned_cols=25 Identities=24% Similarity=0.836 Sum_probs=19.8
Q ss_pred ccccccCCC-CCCceeecCCCCcCceeeC
Q 001054 143 HACRYCGVS-NPACVVRCNVPSCRKWFCN 170 (1171)
Q Consensus 143 ~~c~yc~~~-~~~~~~~c~~~~~~~wfcn 170 (1171)
-.| +|+.. +..-+|.|.. |.+||=-
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~--C~~w~H~ 54 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDK--CSVWQHI 54 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTT--TCBEEET
T ss_pred EEe-ECCCccCCCcEEEcCC--CCCcCcC
Confidence 467 78875 4678999999 9999943
No 452
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=66.08 E-value=3.2 Score=46.69 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=22.0
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMA 430 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Ll 430 (1171)
.++.+|.||.|+|||+++-+|...|.
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~~~l~ 48 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 57899999999999999887766554
No 453
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=65.78 E-value=3.3 Score=42.47 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=18.0
Q ss_pred CcEEEEcCCCChHhHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVY 427 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~ 427 (1171)
.-.+|.|++|+|||+++..++.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~ 34 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTT 34 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3478999999999998876653
No 454
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=65.75 E-value=4.3 Score=44.90 Aligned_cols=31 Identities=32% Similarity=0.394 Sum_probs=24.0
Q ss_pred HHHHHHhhcCCcEEEEcCCCChHhHHHHHHH
Q 001054 396 VFAVKSVLQRPISLIQGPPGTGKTVTSAAIV 426 (1171)
Q Consensus 396 ~~AV~~aL~~~lsLIqGPPGTGKTtTla~iI 426 (1171)
.+.+...+...+..|.||+|+||||++..+.
T Consensus 160 v~~lf~~l~geiv~l~G~sG~GKSTll~~l~ 190 (301)
T 1u0l_A 160 IEELKEYLKGKISTMAGLSGVGKSSLLNAIN 190 (301)
T ss_dssp HHHHHHHHSSSEEEEECSTTSSHHHHHHHHS
T ss_pred HHHHHHHhcCCeEEEECCCCCcHHHHHHHhc
Confidence 3445555667889999999999999876665
No 455
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=65.66 E-value=3.3 Score=48.79 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=21.4
Q ss_pred cEEEEcCCCChHhHHHHHHHHHHHHc
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHMAKQ 432 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~Llk~ 432 (1171)
+.++.|.||+||||++..+...+-..
T Consensus 41 ~IvlvGlpGsGKSTia~~La~~l~~~ 66 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRYLNFI 66 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 57899999999999988887766543
No 456
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=65.65 E-value=3 Score=42.32 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=17.2
Q ss_pred cEEEEcCCCChHhHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVY 427 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~ 427 (1171)
.++|.|++|+||||++..++.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~ 51 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTR 51 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 368999999999998776653
No 457
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=65.45 E-value=1.3 Score=47.77 Aligned_cols=24 Identities=17% Similarity=0.098 Sum_probs=19.2
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
.+.+|.|++|+||||.+..+...|
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999887666543
No 458
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=64.77 E-value=3.5 Score=39.77 Aligned_cols=19 Identities=16% Similarity=0.230 Sum_probs=16.4
Q ss_pred EEEEcCCCChHhHHHHHHH
Q 001054 408 SLIQGPPGTGKTVTSAAIV 426 (1171)
Q Consensus 408 sLIqGPPGTGKTtTla~iI 426 (1171)
.+|.|++|+|||+++..++
T Consensus 8 i~v~G~~~~GKssl~~~l~ 26 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYC 26 (168)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 5789999999999887765
No 459
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=64.65 E-value=3.4 Score=42.91 Aligned_cols=21 Identities=33% Similarity=0.371 Sum_probs=18.3
Q ss_pred cEEEEcCCCChHhHHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIVY 427 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~ 427 (1171)
-+||.|++|+||||++.+++.
T Consensus 18 gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999888775
No 460
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=64.37 E-value=3.6 Score=39.47 Aligned_cols=19 Identities=26% Similarity=0.531 Sum_probs=16.1
Q ss_pred EEEEcCCCChHhHHHHHHH
Q 001054 408 SLIQGPPGTGKTVTSAAIV 426 (1171)
Q Consensus 408 sLIqGPPGTGKTtTla~iI 426 (1171)
.+|.|++|+|||+++..++
T Consensus 6 i~v~G~~~~GKSsli~~l~ 24 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5799999999999876655
No 461
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=64.00 E-value=3.5 Score=39.44 Aligned_cols=19 Identities=21% Similarity=0.522 Sum_probs=16.2
Q ss_pred EEEEcCCCChHhHHHHHHH
Q 001054 408 SLIQGPPGTGKTVTSAAIV 426 (1171)
Q Consensus 408 sLIqGPPGTGKTtTla~iI 426 (1171)
.+|.|.+|+|||+++..++
T Consensus 6 i~v~G~~~~GKssl~~~l~ 24 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLI 24 (166)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5799999999999876665
No 462
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=63.96 E-value=3.7 Score=40.34 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=16.9
Q ss_pred cEEEEcCCCChHhHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIV 426 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI 426 (1171)
..+|.|++|+|||+++..++
T Consensus 5 ~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 36899999999999877765
No 463
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=63.69 E-value=3.9 Score=47.72 Aligned_cols=36 Identities=19% Similarity=0.159 Sum_probs=26.5
Q ss_pred CHHHHHHHHHhhc-CCcEEEEcCCCChHhHHHHHHHH
Q 001054 392 NASQVFAVKSVLQ-RPISLIQGPPGTGKTVTSAAIVY 427 (1171)
Q Consensus 392 NesQ~~AV~~aL~-~~lsLIqGPPGTGKTtTla~iI~ 427 (1171)
+...+++++.+.. ..++.|.|++|+||||++..+.-
T Consensus 55 ~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 55 NSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred chhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhC
Confidence 3445666666655 34678999999999999877664
No 464
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=63.56 E-value=3.7 Score=42.76 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=20.7
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHM 429 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~L 429 (1171)
..+..|.|++|||||++...+...|
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 4578899999999999887777654
No 465
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=63.18 E-value=4.3 Score=47.66 Aligned_cols=54 Identities=17% Similarity=0.127 Sum_probs=34.3
Q ss_pred HHHHHHhhc---CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHH
Q 001054 396 VFAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQL 450 (1171)
Q Consensus 396 ~~AV~~aL~---~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L 450 (1171)
..||..++. .....|.||.|+||||++..++.. .+-....|.++.-...-+..+
T Consensus 145 ~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~-~~~~~G~i~~~G~r~~ev~~~ 201 (438)
T 2dpy_A 145 VRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARY-TRADVIVVGLIGERGREVKDF 201 (438)
T ss_dssp CHHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHH-SCCSEEEEEEESCCHHHHHHH
T ss_pred ceEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhcc-cCCCeEEEEEeceecHHHHHH
Confidence 357777654 457899999999999997666554 322233566665543344444
No 466
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=63.04 E-value=3.8 Score=44.08 Aligned_cols=33 Identities=30% Similarity=0.516 Sum_probs=22.6
Q ss_pred CcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEE
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLV 439 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV 439 (1171)
.++.|.||.|+||||++..+.- +++-..+.|.+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G-l~~p~~G~i~~ 57 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG-IVKPDRGEVRL 57 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT-SSCCSEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHhC-CCCCCceEEEE
Confidence 5678999999999998776553 22222335655
No 467
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=63.01 E-value=7.3 Score=42.11 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=32.3
Q ss_pred cEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHh
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISA 456 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ApSN~AVD~L~eRL~~ 456 (1171)
+..|+|++||||||++..+..++ .+-++++.....+.+.+++..
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~~------g~~~~~~~~~~~~~~~~~~g~ 46 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSNY------SAVKYQLAGPIKDALAYAWGV 46 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS------CEEECCTTHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc------CCeEEecChHHHHHHHHHccc
Confidence 45789999999999876654321 244678888888888877653
No 468
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=62.99 E-value=5.8 Score=47.33 Aligned_cols=61 Identities=18% Similarity=0.144 Sum_probs=41.2
Q ss_pred HHHHHhhc---CCcEEEEcCCCChHhHHHHHHHHHHHHcCCC-c-EEEEcCcHHHHHHHHHHHHhc
Q 001054 397 FAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHMAKQGQG-Q-VLVCAPSNVAVDQLAEKISAT 457 (1171)
Q Consensus 397 ~AV~~aL~---~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~-r-ILV~ApSN~AVD~L~eRL~~~ 457 (1171)
+||...+. ..-..|.|++|+|||+++..++....+.... . +..|.-...-+.++.+.+.+.
T Consensus 154 rvID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 154 KVVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp TTHHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred eEeeeecccccCCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 45555543 3457899999999999999999887654221 2 334455566677777777664
No 469
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=62.88 E-value=3.9 Score=40.90 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=17.1
Q ss_pred cEEEEcCCCChHhHHHHHHH
Q 001054 407 ISLIQGPPGTGKTVTSAAIV 426 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI 426 (1171)
-.+|.|++|+|||+++..++
T Consensus 50 ~i~vvG~~g~GKSsll~~l~ 69 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLT 69 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 47899999999999877665
No 470
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=62.81 E-value=4 Score=39.96 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=16.3
Q ss_pred EEEEcCCCChHhHHHHHHH
Q 001054 408 SLIQGPPGTGKTVTSAAIV 426 (1171)
Q Consensus 408 sLIqGPPGTGKTtTla~iI 426 (1171)
.+|.|++|+|||+++..++
T Consensus 10 i~v~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5899999999999877664
No 471
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=62.60 E-value=4.1 Score=39.30 Aligned_cols=19 Identities=21% Similarity=0.337 Sum_probs=16.2
Q ss_pred EEEEcCCCChHhHHHHHHH
Q 001054 408 SLIQGPPGTGKTVTSAAIV 426 (1171)
Q Consensus 408 sLIqGPPGTGKTtTla~iI 426 (1171)
.+|.|++|+|||+++..++
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFV 24 (170)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5789999999999877664
No 472
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=62.60 E-value=3.7 Score=43.56 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=23.2
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEE
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLV 439 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV 439 (1171)
..++.|.||.|+||||++..+.- +++-..+.|.+
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G-l~~p~~G~i~~ 63 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL-LDAPTEGKVFL 63 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT-SSCCSEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhc-CCCCCceEEEE
Confidence 56889999999999998765543 33222345665
No 473
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=62.59 E-value=3.6 Score=44.08 Aligned_cols=34 Identities=21% Similarity=0.376 Sum_probs=23.3
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEE
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLV 439 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV 439 (1171)
..++.|.||.|+||||++..+... ++-..+.|.+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl-~~p~~G~I~~ 64 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE-MDKVEGHVAI 64 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC-SEEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC-CCCCCceEEE
Confidence 568899999999999987766532 2222235555
No 474
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=62.56 E-value=4 Score=39.93 Aligned_cols=19 Identities=37% Similarity=0.475 Sum_probs=16.3
Q ss_pred EEEEcCCCChHhHHHHHHH
Q 001054 408 SLIQGPPGTGKTVTSAAIV 426 (1171)
Q Consensus 408 sLIqGPPGTGKTtTla~iI 426 (1171)
.+|.|++|+|||+++..++
T Consensus 11 i~v~G~~~~GKSsli~~l~ 29 (182)
T 1ky3_A 11 VIILGDSGVGKTSLMHRYV 29 (182)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5899999999999877665
No 475
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=62.42 E-value=4.2 Score=39.07 Aligned_cols=19 Identities=21% Similarity=0.485 Sum_probs=16.2
Q ss_pred EEEEcCCCChHhHHHHHHH
Q 001054 408 SLIQGPPGTGKTVTSAAIV 426 (1171)
Q Consensus 408 sLIqGPPGTGKTtTla~iI 426 (1171)
.+|.|.+|+|||+++..++
T Consensus 7 i~v~G~~~~GKssl~~~l~ 25 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999876665
No 476
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=62.10 E-value=6.3 Score=47.87 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=24.6
Q ss_pred cEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEE
Q 001054 407 ISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (1171)
Q Consensus 407 lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ 440 (1171)
+.+|.|++|+||||++..+...|-..+..++.++
T Consensus 398 ~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~l 431 (573)
T 1m8p_A 398 TIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLL 431 (573)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEE
T ss_pred EEEeecCCCCCHHHHHHHHHHHhcccCCceEEEE
Confidence 5678999999999988877777665442244444
No 477
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=62.08 E-value=4.1 Score=43.08 Aligned_cols=35 Identities=26% Similarity=0.372 Sum_probs=23.9
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEE
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ 440 (1171)
..++.|.||.|+||||++..+.- +++-..+.|.+.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~G-l~~p~~G~I~~~ 69 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTIST-YLKPLKGEIIYN 69 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTT-SSCCSEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHhc-CCCCCCeEEEEC
Confidence 56889999999999998776543 222223456653
No 478
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=61.92 E-value=4.1 Score=43.52 Aligned_cols=35 Identities=29% Similarity=0.453 Sum_probs=23.7
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEE
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ 440 (1171)
..++.|.||-|+||||++..+.- +++-..+.|.+.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G-l~~p~~G~I~~~ 65 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC-LDKPTEGEVYID 65 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT-SSCCSEEEEEET
T ss_pred CCEEEEECCCCCcHHHHHHHHhc-CCCCCceEEEEC
Confidence 56889999999999997665543 332223466654
No 479
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=61.87 E-value=4 Score=39.47 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=16.2
Q ss_pred EEEEcCCCChHhHHHHHHH
Q 001054 408 SLIQGPPGTGKTVTSAAIV 426 (1171)
Q Consensus 408 sLIqGPPGTGKTtTla~iI 426 (1171)
.+|.|++|+|||+++..++
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFV 24 (170)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 5789999999999877665
No 480
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=61.43 E-value=4.9 Score=48.66 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=23.9
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEE
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ 440 (1171)
..+++|.|++|+||||++..+...|-.....+|.++
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~l 404 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLL 404 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEE
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEE
Confidence 346789999999999887776665533222245433
No 481
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=61.43 E-value=4.4 Score=39.17 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=16.2
Q ss_pred EEEEcCCCChHhHHHHHHH
Q 001054 408 SLIQGPPGTGKTVTSAAIV 426 (1171)
Q Consensus 408 sLIqGPPGTGKTtTla~iI 426 (1171)
.+|.|.+|+|||+++..++
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFV 24 (172)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999877665
No 482
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=61.18 E-value=4.4 Score=39.44 Aligned_cols=19 Identities=32% Similarity=0.601 Sum_probs=16.1
Q ss_pred EEEEcCCCChHhHHHHHHH
Q 001054 408 SLIQGPPGTGKTVTSAAIV 426 (1171)
Q Consensus 408 sLIqGPPGTGKTtTla~iI 426 (1171)
.+|.|++|+|||+++..++
T Consensus 7 i~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHh
Confidence 5899999999999876654
No 483
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=61.10 E-value=4.5 Score=43.57 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=19.5
Q ss_pred CCcEEEEcCCCChHhHHHHHHHH
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVY 427 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~ 427 (1171)
..++.|.||.|+||||++..+.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 56889999999999998776664
No 484
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=60.92 E-value=4.6 Score=39.07 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=16.3
Q ss_pred EEEEcCCCChHhHHHHHHH
Q 001054 408 SLIQGPPGTGKTVTSAAIV 426 (1171)
Q Consensus 408 sLIqGPPGTGKTtTla~iI 426 (1171)
.+|.|++|+|||+++..++
T Consensus 9 i~v~G~~~~GKSsli~~l~ 27 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFV 27 (170)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 5789999999999877664
No 485
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=60.77 E-value=4.6 Score=38.92 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=16.2
Q ss_pred EEEEcCCCChHhHHHHHHH
Q 001054 408 SLIQGPPGTGKTVTSAAIV 426 (1171)
Q Consensus 408 sLIqGPPGTGKTtTla~iI 426 (1171)
.+|.|.+|+|||+++..++
T Consensus 9 i~v~G~~~~GKssli~~l~ 27 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5799999999999876664
No 486
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=60.72 E-value=4.1 Score=46.17 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=18.9
Q ss_pred CcEEEEcCCCChHhHHHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIVYH 428 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI~~ 428 (1171)
..+.|.||.|+||||++..+...
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999988776654
No 487
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=60.37 E-value=4.7 Score=39.07 Aligned_cols=19 Identities=21% Similarity=0.195 Sum_probs=16.1
Q ss_pred EEEEcCCCChHhHHHHHHH
Q 001054 408 SLIQGPPGTGKTVTSAAIV 426 (1171)
Q Consensus 408 sLIqGPPGTGKTtTla~iI 426 (1171)
.+|.|.+|+|||+++..++
T Consensus 9 i~v~G~~~~GKssli~~l~ 27 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYC 27 (170)
T ss_dssp EEEECCTTSCHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 5799999999999876654
No 488
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=60.32 E-value=4.8 Score=39.07 Aligned_cols=19 Identities=21% Similarity=0.459 Sum_probs=15.9
Q ss_pred EEEEcCCCChHhHHHHHHH
Q 001054 408 SLIQGPPGTGKTVTSAAIV 426 (1171)
Q Consensus 408 sLIqGPPGTGKTtTla~iI 426 (1171)
.+|.|.+|+|||+++..++
T Consensus 5 i~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5799999999999876654
No 489
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=60.20 E-value=4.8 Score=39.40 Aligned_cols=21 Identities=38% Similarity=0.444 Sum_probs=17.3
Q ss_pred CcEEEEcCCCChHhHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIV 426 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI 426 (1171)
.-.+|.|.+|+|||+++..++
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~ 29 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIR 29 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 346899999999999887664
No 490
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=60.14 E-value=4.8 Score=38.75 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=16.2
Q ss_pred EEEEcCCCChHhHHHHHHH
Q 001054 408 SLIQGPPGTGKTVTSAAIV 426 (1171)
Q Consensus 408 sLIqGPPGTGKTtTla~iI 426 (1171)
.+|.|.+|+|||+++..++
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999876665
No 491
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=60.09 E-value=4 Score=40.87 Aligned_cols=19 Identities=32% Similarity=0.527 Sum_probs=16.4
Q ss_pred EEEEcCCCChHhHHHHHHH
Q 001054 408 SLIQGPPGTGKTVTSAAIV 426 (1171)
Q Consensus 408 sLIqGPPGTGKTtTla~iI 426 (1171)
.+|.|++|+|||+++..++
T Consensus 5 v~ivG~~gvGKStLl~~l~ 23 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLM 23 (184)
T ss_dssp EEEESCTTSSHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 5799999999999877665
No 492
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=60.05 E-value=4.8 Score=43.91 Aligned_cols=36 Identities=28% Similarity=0.346 Sum_probs=24.5
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHH-HHcCCCcEEEE
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHM-AKQGQGQVLVC 440 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~L-lk~~~~rILV~ 440 (1171)
..++.|.||.|+||||++..+.-.+ ..-..+.|.+.
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~ 82 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFK 82 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEEC
Confidence 5688999999999999887665432 11122466664
No 493
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=59.93 E-value=4.2 Score=43.22 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=23.3
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEE
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLV 439 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV 439 (1171)
..++.|.||.|+||||++..+.-. ++-..+.|.+
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl-~~p~~G~i~~ 67 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGE-LEPSEGKIKH 67 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS-SCCSEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC-CcCCccEEEE
Confidence 568899999999999987765532 2222235655
No 494
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=59.91 E-value=7 Score=46.84 Aligned_cols=39 Identities=23% Similarity=0.430 Sum_probs=29.6
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHc-CC--CcEEEEcCc
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQ-GQ--GQVLVCAPS 443 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~-~~--~rILV~ApS 443 (1171)
.+..||.|++|+|||+++..++..|+.. .+ -++.++=+.
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 4778999999999999999999877754 22 245555554
No 495
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=59.79 E-value=4.6 Score=43.89 Aligned_cols=34 Identities=26% Similarity=0.516 Sum_probs=23.5
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEE
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLV 439 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV 439 (1171)
..++.|.||.|+||||++..+.- +++-..+.|.+
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G-l~~p~~G~i~~ 65 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF-LEKPSEGAIIV 65 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT-SSCCSEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhc-CCCCCCcEEEE
Confidence 56789999999999998776553 22222345665
No 496
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=59.75 E-value=4.7 Score=43.64 Aligned_cols=35 Identities=31% Similarity=0.482 Sum_probs=23.9
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEE
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ 440 (1171)
..++.|.||.|+||||++..+.-. ++-..+.|.+.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl-~~p~~G~i~~~ 67 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGF-LKADEGRVYFE 67 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS-SCCSEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC-CCCCCcEEEEC
Confidence 568899999999999987766532 22223456653
No 497
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=59.66 E-value=15 Score=43.82 Aligned_cols=63 Identities=21% Similarity=0.245 Sum_probs=41.4
Q ss_pred HHHHHHhhc---CCcEEEEcCCCChHhHHHHHHHHHHHHc-------CCC--cEEEEcCcHHHHHHHHHHHHhcC
Q 001054 396 VFAVKSVLQ---RPISLIQGPPGTGKTVTSAAIVYHMAKQ-------GQG--QVLVCAPSNVAVDQLAEKISATG 458 (1171)
Q Consensus 396 ~~AV~~aL~---~~lsLIqGPPGTGKTtTla~iI~~Llk~-------~~~--rILV~ApSN~AVD~L~eRL~~~g 458 (1171)
.+||...+. ..-.+|.|++|||||+++...|..-... ... =++.|.-...-+.++.+.+.+.+
T Consensus 150 iraID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g 224 (510)
T 2ck3_A 150 IKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDAD 224 (510)
T ss_dssp CHHHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTT
T ss_pred ceeeccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcC
Confidence 367776653 3456999999999999966544443331 111 13445667788888888887754
No 498
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=59.65 E-value=4.4 Score=40.48 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=17.7
Q ss_pred CcEEEEcCCCChHhHHHHHHH
Q 001054 406 PISLIQGPPGTGKTVTSAAIV 426 (1171)
Q Consensus 406 ~lsLIqGPPGTGKTtTla~iI 426 (1171)
.-.+|.|++|+|||+++..++
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~ 44 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLI 44 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 346899999999999887765
No 499
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=59.65 E-value=4.8 Score=43.13 Aligned_cols=35 Identities=29% Similarity=0.469 Sum_probs=24.0
Q ss_pred CCcEEEEcCCCChHhHHHHHHHHHHHHcCCCcEEEE
Q 001054 405 RPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVC 440 (1171)
Q Consensus 405 ~~lsLIqGPPGTGKTtTla~iI~~Llk~~~~rILV~ 440 (1171)
..++.|.||.|+||||++..+.- +++-..+.|.+.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G-l~~p~~G~i~~~ 66 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG-LVRAQKGKIIFN 66 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT-SSCCSEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHhC-CCCCCCceEEEC
Confidence 56889999999999998766553 222223466653
No 500
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=59.29 E-value=4.7 Score=39.33 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=16.2
Q ss_pred EEEEcCCCChHhHHHHHHH
Q 001054 408 SLIQGPPGTGKTVTSAAIV 426 (1171)
Q Consensus 408 sLIqGPPGTGKTtTla~iI 426 (1171)
.+|.|++|+|||+++..++
T Consensus 17 i~v~G~~~~GKssli~~l~ 35 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITRFM 35 (179)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999877665
Done!