Query 001055
Match_columns 1171
No_of_seqs 550 out of 5065
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 14:34:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001055.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001055hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03130 ABC transporter C fam 100.0 6E-171 1E-175 1698.4 133.7 1169 2-1171 454-1622(1622)
2 KOG0054 Multidrug resistance-a 100.0 1E-171 3E-176 1610.1 111.4 1013 1-1021 354-1373(1381)
3 PLN03232 ABC transporter C fam 100.0 9E-150 2E-154 1496.6 128.2 1028 2-1033 454-1481(1495)
4 TIGR00957 MRP_assoc_pro multi 100.0 2E-140 5E-145 1407.9 127.5 1013 2-1023 471-1520(1522)
5 PTZ00243 ABC transporter; Prov 100.0 1E-137 3E-142 1376.4 124.5 1016 2-1026 400-1549(1560)
6 TIGR01271 CFTR_protein cystic 100.0 9E-136 2E-140 1359.6 124.7 1014 2-1028 235-1457(1490)
7 KOG0055 Multidrug/pheromone ex 100.0 1E-132 3E-137 1226.2 101.4 996 8-1023 191-1225(1228)
8 PTZ00265 multidrug resistance 100.0 6E-120 1E-124 1197.3 120.3 1008 7-1022 216-1464(1466)
9 KOG0058 Peptide exporter, ABC 100.0 1.1E-79 2.3E-84 720.9 62.6 548 463-1023 146-704 (716)
10 COG2274 SunT ABC-type bacterio 100.0 3.3E-75 7.1E-80 713.5 67.1 543 465-1022 155-707 (709)
11 COG1123 ATPase components of v 100.0 3.6E-72 7.8E-77 651.0 47.2 465 162-1021 5-530 (539)
12 PRK11174 cysteine/glutathione 100.0 1E-69 2.2E-74 675.1 72.1 550 467-1022 25-583 (588)
13 PRK10261 glutathione transport 100.0 1.6E-71 3.5E-76 689.7 50.4 485 161-1017 11-560 (623)
14 COG1132 MdlB ABC-type multidru 100.0 3.2E-69 7E-74 666.9 68.7 543 466-1023 16-564 (567)
15 TIGR01257 rim_protein retinal- 100.0 2.2E-69 4.8E-74 710.8 70.9 307 785-1125 1936-2254(2272)
16 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 3.1E-68 6.6E-73 671.9 72.8 539 465-1021 137-683 (686)
17 COG4987 CydC ABC-type transpor 100.0 1.2E-68 2.5E-73 606.4 60.7 503 510-1021 66-571 (573)
18 PRK13549 xylose transporter AT 100.0 9E-71 2E-75 670.7 45.3 449 161-1008 4-492 (506)
19 PRK15134 microcin C ABC transp 100.0 1.3E-70 2.7E-75 673.0 46.0 455 161-1012 4-517 (529)
20 PRK09700 D-allose transporter 100.0 1.9E-70 4.2E-75 668.9 45.1 446 161-1005 4-493 (510)
21 TIGR03269 met_CoM_red_A2 methy 100.0 2E-70 4.3E-75 670.3 45.0 438 163-1010 1-517 (520)
22 TIGR00958 3a01208 Conjugate Tr 100.0 8.2E-68 1.8E-72 667.3 69.8 542 465-1019 162-710 (711)
23 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.2E-67 2.5E-72 669.5 69.8 540 468-1020 158-709 (710)
24 PRK10790 putative multidrug tr 100.0 4.1E-67 8.9E-72 651.8 73.3 542 466-1022 25-574 (592)
25 PRK11160 cysteine/glutathione 100.0 2.5E-67 5.3E-72 648.9 70.6 497 508-1021 66-572 (574)
26 TIGR01193 bacteriocin_ABC ABC- 100.0 1.3E-67 2.8E-72 668.4 69.9 540 466-1021 158-707 (708)
27 PRK10762 D-ribose transporter 100.0 5E-70 1.1E-74 663.3 44.2 441 162-1008 4-482 (501)
28 PRK15439 autoinducer 2 ABC tra 100.0 1.2E-69 2.7E-74 660.3 47.6 450 161-1009 10-491 (510)
29 COG0488 Uup ATPase components 100.0 1.7E-69 3.6E-74 643.6 46.7 487 162-1011 3-526 (530)
30 KOG0055 Multidrug/pheromone ex 100.0 4E-69 8.7E-74 664.6 50.9 513 502-1024 71-589 (1228)
31 PRK15064 ABC transporter ATP-b 100.0 9.3E-69 2E-73 656.6 52.9 201 786-1011 319-526 (530)
32 PRK11176 lipid transporter ATP 100.0 1E-66 2.3E-71 647.7 71.6 501 509-1021 72-577 (582)
33 COG4988 CydD ABC-type transpor 100.0 6.2E-67 1.3E-71 603.8 64.0 508 505-1022 43-554 (559)
34 PRK10636 putative ABC transpor 100.0 4E-68 8.6E-73 659.6 57.7 199 786-1010 312-517 (638)
35 PRK11288 araG L-arabinose tran 100.0 1.6E-69 3.5E-74 658.9 44.4 445 161-1009 3-484 (501)
36 TIGR03375 type_I_sec_LssB type 100.0 1E-66 2.2E-71 658.9 70.6 530 467-1011 150-689 (694)
37 TIGR02633 xylG D-xylose ABC tr 100.0 2.7E-69 5.8E-74 657.7 44.8 447 163-1007 2-489 (500)
38 PRK11819 putative ABC transpor 100.0 3.1E-67 6.8E-72 645.1 54.7 481 161-1011 5-534 (556)
39 PRK10982 galactose/methyl gala 100.0 2.5E-68 5.3E-73 647.4 42.8 435 165-1007 1-477 (491)
40 TIGR01846 type_I_sec_HlyB type 100.0 2.5E-65 5.4E-70 645.6 71.5 539 468-1021 143-690 (694)
41 TIGR02203 MsbA_lipidA lipid A 100.0 4.1E-65 8.9E-70 632.6 71.6 543 466-1020 16-565 (571)
42 KOG0057 Mitochondrial Fe/S clu 100.0 3.8E-66 8.2E-71 586.1 56.5 533 476-1022 42-585 (591)
43 PRK10938 putative molybdenum t 100.0 4.5E-68 9.7E-73 645.4 43.9 442 162-1003 3-485 (490)
44 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 9.1E-67 2E-71 641.0 54.7 480 162-1009 4-530 (552)
45 PRK11147 ABC transporter ATPas 100.0 7.8E-67 1.7E-71 649.9 54.7 203 786-1010 319-528 (635)
46 PRK13657 cyclic beta-1,2-gluca 100.0 8.6E-65 1.9E-69 630.1 71.8 545 466-1022 21-569 (588)
47 KOG0056 Heavy metal exporter H 100.0 2.2E-67 4.8E-72 579.9 38.0 500 515-1023 272-774 (790)
48 TIGR01192 chvA glucan exporter 100.0 1.7E-63 3.7E-68 615.5 72.9 546 465-1022 20-569 (585)
49 PRK10789 putative multidrug tr 100.0 6.2E-64 1.4E-68 618.6 67.7 501 507-1022 41-549 (569)
50 TIGR02204 MsbA_rel ABC transpo 100.0 1.6E-63 3.4E-68 618.8 71.1 547 466-1021 20-573 (576)
51 TIGR02868 CydC thiol reductant 100.0 4.5E-64 9.7E-69 616.8 65.4 504 469-982 18-529 (529)
52 COG4172 ABC-type uncharacteriz 100.0 6.7E-66 1.4E-70 560.8 40.8 458 161-1019 5-525 (534)
53 TIGR02857 CydD thiol reductant 100.0 2.4E-63 5.1E-68 610.4 65.2 513 468-994 7-529 (529)
54 TIGR00956 3a01205 Pleiotropic 100.0 4.5E-63 9.7E-68 655.9 59.0 211 786-1007 759-990 (1394)
55 TIGR01842 type_I_sec_PrtD type 100.0 2E-61 4.4E-66 594.0 68.8 526 467-1010 9-542 (544)
56 PLN03073 ABC transporter F fam 100.0 5.1E-63 1.1E-67 614.5 54.9 200 785-1009 507-713 (718)
57 PTZ00265 multidrug resistance 100.0 5.7E-62 1.2E-66 645.5 68.3 564 448-1023 45-728 (1466)
58 TIGR01194 cyc_pep_trnsptr cycl 100.0 3.2E-59 6.9E-64 574.6 65.7 515 471-1002 25-551 (555)
59 PRK13409 putative ATPase RIL; 100.0 7.1E-62 1.5E-66 594.7 40.6 191 786-1004 340-536 (590)
60 KOG0058 Peptide exporter, ABC 100.0 2.5E-61 5.5E-66 566.1 42.2 383 5-388 305-704 (716)
61 COG1129 MglA ABC-type sugar tr 100.0 1.7E-61 3.7E-66 558.7 40.2 442 161-1005 7-485 (500)
62 COG5265 ATM1 ABC-type transpor 100.0 3.7E-61 8.1E-66 528.3 37.3 486 525-1021 5-496 (497)
63 PLN03140 ABC transporter G fam 100.0 4.6E-60 1E-64 623.9 50.9 211 786-1006 867-1106(1470)
64 COG2274 SunT ABC-type bacterio 100.0 4.8E-60 1.1E-64 579.9 46.3 380 5-386 310-706 (709)
65 PLN03130 ABC transporter C fam 100.0 2.7E-56 5.8E-61 596.9 69.5 470 527-1022 366-839 (1622)
66 COG3845 ABC-type uncharacteriz 100.0 6.4E-59 1.4E-63 524.4 36.9 453 161-1007 3-489 (501)
67 PLN03232 ABC transporter C fam 100.0 2.7E-56 5.8E-61 597.5 69.0 471 527-1022 366-839 (1495)
68 PRK10522 multidrug transporter 100.0 5.4E-56 1.2E-60 546.0 65.9 470 515-1007 61-536 (547)
69 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 2.6E-57 5.7E-62 572.4 49.9 378 5-386 292-683 (686)
70 COG4618 ArpD ABC-type protease 100.0 4.3E-56 9.3E-61 499.0 48.3 484 508-1011 69-561 (580)
71 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 9E-57 1.9E-61 570.1 48.6 376 6-385 311-709 (710)
72 COG4988 CydD ABC-type transpor 100.0 1.1E-56 2.3E-61 518.8 44.4 383 1-388 152-555 (559)
73 PRK11174 cysteine/glutathione 100.0 2.2E-56 4.9E-61 555.5 48.5 374 7-387 182-583 (588)
74 TIGR00958 3a01208 Conjugate Tr 100.0 3.6E-56 7.8E-61 561.6 47.5 376 6-384 319-710 (711)
75 TIGR01193 bacteriocin_ABC ABC- 100.0 5.1E-56 1.1E-60 562.6 48.3 377 6-386 313-707 (708)
76 TIGR03375 type_I_sec_LssB type 100.0 9.8E-56 2.1E-60 558.8 48.2 370 6-377 303-689 (694)
77 PRK11176 lipid transporter ATP 100.0 1.7E-55 3.6E-60 547.3 48.6 380 6-387 183-578 (582)
78 TIGR00957 MRP_assoc_pro multi 100.0 1E-52 2.2E-57 563.8 70.8 530 470-1021 323-860 (1522)
79 TIGR02203 MsbA_lipidA lipid A 100.0 2.4E-54 5.3E-59 536.2 48.3 379 6-386 172-566 (571)
80 COG1132 MdlB ABC-type multidru 100.0 3.5E-54 7.6E-59 532.9 47.7 379 7-388 171-564 (567)
81 PRK11160 cysteine/glutathione 100.0 8.9E-54 1.9E-58 528.4 49.0 376 7-386 180-572 (574)
82 PRK10790 putative multidrug tr 100.0 9.2E-54 2E-58 532.1 49.5 374 9-388 186-575 (592)
83 TIGR01842 type_I_sec_PrtD type 100.0 1E-53 2.3E-58 525.8 47.7 368 7-376 160-542 (544)
84 PRK10789 putative multidrug tr 100.0 1.6E-53 3.5E-58 526.0 49.0 378 8-387 157-549 (569)
85 KOG0057 Mitochondrial Fe/S clu 100.0 8.1E-54 1.8E-58 485.8 41.1 375 9-387 196-585 (591)
86 TIGR01846 type_I_sec_HlyB type 100.0 1.9E-53 4.1E-58 537.6 48.9 378 7-386 297-690 (694)
87 KOG0054 Multidrug resistance-a 100.0 9.3E-52 2E-56 523.4 63.3 522 475-1019 212-739 (1381)
88 PRK13657 cyclic beta-1,2-gluca 100.0 3.8E-53 8.2E-58 525.9 49.8 379 6-387 174-569 (588)
89 TIGR02204 MsbA_rel ABC transpo 100.0 3.8E-53 8.3E-58 525.8 49.0 380 6-386 176-573 (576)
90 TIGR00954 3a01203 Peroxysomal 100.0 4.1E-52 8.8E-57 518.3 57.8 510 465-995 97-652 (659)
91 COG4987 CydC ABC-type transpor 100.0 3.3E-53 7.1E-58 480.8 38.0 374 9-385 180-570 (573)
92 KOG0927 Predicted transporter 100.0 6.3E-54 1.4E-58 484.2 31.8 200 786-1009 389-595 (614)
93 COG4618 ArpD ABC-type protease 100.0 4.2E-53 9.2E-58 474.9 36.5 364 12-377 183-561 (580)
94 TIGR01192 chvA glucan exporter 100.0 5.6E-52 1.2E-56 513.1 49.6 378 7-387 175-569 (585)
95 TIGR01271 CFTR_protein cystic 100.0 2.2E-50 4.9E-55 539.5 68.4 482 509-1020 129-645 (1490)
96 TIGR02868 CydC thiol reductant 100.0 2.8E-52 6.1E-57 512.4 44.0 333 13-348 179-529 (529)
97 TIGR02857 CydD thiol reductant 100.0 2.9E-51 6.3E-56 503.3 45.4 351 8-360 164-529 (529)
98 PTZ00243 ABC transporter; Prov 100.0 1.2E-48 2.7E-53 522.8 67.8 530 469-1021 249-879 (1560)
99 KOG0056 Heavy metal exporter H 100.0 1.5E-51 3.2E-56 454.8 27.8 353 31-388 402-774 (790)
100 KOG0062 ATPase component of AB 100.0 1.6E-50 3.4E-55 454.4 29.2 200 785-1007 361-566 (582)
101 COG1126 GlnQ ABC-type polar am 100.0 2.6E-49 5.7E-54 402.9 22.5 218 787-1013 3-228 (240)
102 cd03289 ABCC_CFTR2 The CFTR su 100.0 2.2E-48 4.8E-53 433.6 29.7 240 785-1026 1-240 (275)
103 TIGR01194 cyc_pep_trnsptr cycl 100.0 3.1E-46 6.8E-51 459.5 42.3 351 8-368 172-551 (555)
104 COG5265 ATM1 ABC-type transpor 100.0 4.5E-47 9.8E-52 417.4 30.4 367 17-386 112-496 (497)
105 COG1125 OpuBA ABC-type proline 100.0 2.5E-47 5.4E-52 395.0 21.1 223 787-1018 2-233 (309)
106 COG1135 AbcC ABC-type metal io 100.0 6.7E-47 1.5E-51 404.2 23.7 219 787-1016 2-237 (339)
107 COG1126 GlnQ ABC-type polar am 100.0 2.7E-46 5.9E-51 380.9 19.0 203 162-378 2-227 (240)
108 PRK10522 multidrug transporter 100.0 5.7E-44 1.2E-48 439.4 42.1 347 6-368 165-530 (547)
109 TIGR00954 3a01203 Peroxysomal 100.0 2E-43 4.3E-48 440.4 45.3 350 6-362 257-653 (659)
110 PRK14257 phosphate ABC transpo 100.0 9.5E-45 2.1E-49 414.8 28.2 227 780-1013 74-316 (329)
111 COG1120 FepC ABC-type cobalami 100.0 4.7E-45 1E-49 392.6 23.1 212 787-1011 3-229 (258)
112 COG1117 PstB ABC-type phosphat 100.0 3.6E-45 7.9E-50 370.3 20.2 219 786-1013 7-240 (253)
113 COG1127 Ttg2A ABC-type transpo 100.0 1.1E-44 2.3E-49 374.9 22.9 215 786-1013 8-238 (263)
114 cd03252 ABCC_Hemolysin The ABC 100.0 6.1E-44 1.3E-48 393.0 28.5 231 787-1018 1-232 (237)
115 KOG0066 eIF2-interacting prote 100.0 1E-43 2.2E-48 387.5 29.7 199 786-1009 586-790 (807)
116 cd03288 ABCC_SUR2 The SUR doma 100.0 9.1E-44 2E-48 395.9 29.5 236 784-1019 17-252 (257)
117 KOG0065 Pleiotropic drug resis 100.0 3.1E-43 6.8E-48 434.0 36.6 199 799-1007 802-1018(1391)
118 cd03244 ABCC_MRP_domain2 Domai 100.0 1.5E-43 3.2E-48 385.9 27.2 219 786-1004 2-220 (221)
119 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 8.1E-44 1.8E-48 380.8 22.0 209 786-1011 4-228 (254)
120 cd03254 ABCC_Glucan_exporter_l 100.0 4.9E-43 1.1E-47 383.9 27.4 225 786-1011 2-227 (229)
121 cd03251 ABCC_MsbA MsbA is an e 100.0 5.3E-43 1.2E-47 384.9 27.5 226 787-1012 1-227 (234)
122 COG3839 MalK ABC-type sugar tr 100.0 1.4E-43 3E-48 395.5 22.8 217 786-1017 3-230 (338)
123 COG1124 DppF ABC-type dipeptid 100.0 2.8E-43 6.1E-48 366.7 22.3 223 786-1018 3-239 (252)
124 TIGR02314 ABC_MetN D-methionin 100.0 3E-43 6.4E-48 402.9 24.0 219 787-1016 2-236 (343)
125 COG3842 PotA ABC-type spermidi 100.0 2.1E-43 4.5E-48 396.1 20.5 217 786-1017 5-233 (352)
126 COG2884 FtsE Predicted ATPase 100.0 2.1E-43 4.5E-48 351.4 17.7 206 787-1004 2-220 (223)
127 COG1122 CbiO ABC-type cobalt t 100.0 4.4E-43 9.6E-48 378.2 21.4 214 786-1011 3-229 (235)
128 COG3638 ABC-type phosphate/pho 100.0 7.1E-43 1.5E-47 360.4 21.3 212 786-1009 3-236 (258)
129 COG1116 TauB ABC-type nitrate/ 100.0 4.6E-43 1E-47 369.3 20.3 197 786-1000 3-212 (248)
130 cd03253 ABCC_ATM1_transporter 100.0 3.5E-42 7.6E-47 378.9 28.2 224 787-1011 1-225 (236)
131 COG4555 NatA ABC-type Na+ tran 100.0 2.2E-43 4.8E-48 353.8 16.2 217 787-1012 2-224 (245)
132 cd03245 ABCC_bacteriocin_expor 100.0 2.8E-42 6.2E-47 375.5 26.4 218 786-1003 2-220 (220)
133 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 3.6E-42 7.8E-47 379.2 26.8 225 787-1011 1-227 (238)
134 COG1137 YhbG ABC-type (unclass 100.0 9.6E-44 2.1E-48 356.0 12.5 223 786-1012 4-230 (243)
135 COG1136 SalX ABC-type antimicr 100.0 3E-42 6.5E-47 363.9 24.0 204 787-1001 2-222 (226)
136 cd03261 ABC_Org_Solvent_Resist 100.0 1.9E-42 4.2E-47 380.5 22.9 216 787-1011 1-227 (235)
137 PRK14257 phosphate ABC transpo 100.0 2.2E-42 4.9E-47 395.2 24.1 265 98-378 23-315 (329)
138 COG1245 Predicted ATPase, RNas 100.0 9.7E-42 2.1E-46 377.1 27.9 183 787-996 343-531 (591)
139 COG3840 ThiQ ABC-type thiamine 100.0 4.1E-42 8.8E-47 338.9 21.9 209 787-1012 2-221 (231)
140 COG1118 CysA ABC-type sulfate/ 100.0 8.1E-43 1.8E-47 371.7 18.4 217 786-1017 2-234 (345)
141 COG1135 AbcC ABC-type metal io 100.0 9.1E-43 2E-47 372.6 18.7 206 162-378 1-233 (339)
142 cd03369 ABCC_NFT1 Domain 2 of 100.0 7.5E-42 1.6E-46 368.4 26.0 207 781-1005 1-207 (207)
143 PRK13537 nodulation ABC transp 100.0 3.2E-42 7E-47 391.5 23.1 216 786-1011 7-228 (306)
144 PRK11650 ugpC glycerol-3-phosp 100.0 6.7E-42 1.4E-46 395.1 25.8 215 787-1015 4-229 (356)
145 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 5.8E-42 1.3E-46 366.5 23.1 204 161-379 3-230 (254)
146 PRK13631 cbiO cobalt transport 100.0 1E-41 2.2E-46 388.7 26.5 219 786-1011 21-266 (320)
147 cd03260 ABC_PstB_phosphate_tra 100.0 4.2E-42 9.2E-47 375.9 22.4 209 787-1008 1-227 (227)
148 PRK14250 phosphate ABC transpo 100.0 2E-41 4.4E-46 373.5 27.0 218 786-1013 3-224 (241)
149 PRK11432 fbpC ferric transport 100.0 7.4E-42 1.6E-46 393.6 24.3 216 786-1016 6-232 (351)
150 COG1131 CcmA ABC-type multidru 100.0 6.9E-42 1.5E-46 385.0 22.3 213 786-1011 4-227 (293)
151 TIGR03265 PhnT2 putative 2-ami 100.0 9.1E-42 2E-46 393.5 23.2 220 786-1016 4-230 (353)
152 PRK11153 metN DL-methionine tr 100.0 2.1E-41 4.5E-46 390.6 25.1 220 787-1013 2-233 (343)
153 COG0410 LivF ABC-type branched 100.0 2E-41 4.4E-46 350.7 22.1 221 786-1012 3-228 (237)
154 PRK14269 phosphate ABC transpo 100.0 3.2E-41 7E-46 373.2 25.2 217 787-1012 3-232 (246)
155 PRK13647 cbiO cobalt transport 100.0 2.2E-41 4.8E-46 379.7 23.8 212 786-1009 4-226 (274)
156 PRK13650 cbiO cobalt transport 100.0 2.4E-41 5.2E-46 380.4 24.0 215 786-1011 4-230 (279)
157 PRK13637 cbiO cobalt transport 100.0 3.6E-41 7.7E-46 380.3 25.1 218 787-1011 3-235 (287)
158 cd03219 ABC_Mj1267_LivG_branch 100.0 2.3E-41 5.1E-46 372.4 23.0 220 787-1010 1-232 (236)
159 cd03296 ABC_CysA_sulfate_impor 100.0 4.1E-41 8.9E-46 370.9 24.9 214 787-1011 3-227 (239)
160 TIGR03258 PhnT 2-aminoethylpho 100.0 1.9E-41 4E-46 391.4 23.0 221 785-1016 4-234 (362)
161 PRK09536 btuD corrinoid ABC tr 100.0 2.4E-41 5.3E-46 393.6 24.1 212 787-1011 4-229 (402)
162 cd03248 ABCC_TAP TAP, the Tran 100.0 4.1E-41 8.8E-46 367.9 24.3 216 784-999 9-226 (226)
163 TIGR00960 3a0501s02 Type II (G 100.0 1.4E-41 2.9E-46 369.0 20.4 202 787-999 2-216 (216)
164 PRK13536 nodulation factor exp 100.0 2.4E-41 5.1E-46 388.2 23.3 216 786-1011 41-262 (340)
165 PRK10851 sulfate/thiosulfate t 100.0 4.1E-41 8.8E-46 388.1 25.3 217 787-1014 3-230 (353)
166 cd03256 ABC_PhnC_transporter A 100.0 3.4E-41 7.3E-46 372.4 23.6 220 787-1009 1-233 (241)
167 COG1116 TauB ABC-type nitrate/ 100.0 1.6E-41 3.4E-46 357.7 19.8 188 162-363 3-207 (248)
168 cd03289 ABCC_CFTR2 The CFTR su 100.0 7E-41 1.5E-45 373.4 26.2 226 162-390 2-239 (275)
169 TIGR01186 proV glycine betaine 100.0 1.7E-41 3.7E-46 390.3 21.8 210 795-1017 2-226 (363)
170 COG1127 Ttg2A ABC-type transpo 100.0 3.2E-41 6.9E-46 349.1 21.4 212 160-385 6-245 (263)
171 COG1125 OpuBA ABC-type proline 100.0 8.9E-42 1.9E-46 353.8 17.2 203 162-378 1-227 (309)
172 cd03224 ABC_TM1139_LivF_branch 100.0 3.6E-41 7.8E-46 367.4 22.7 216 787-1010 1-221 (222)
173 TIGR00972 3a0107s01c2 phosphat 100.0 8.3E-41 1.8E-45 370.3 25.8 217 787-1012 2-234 (247)
174 COG1120 FepC ABC-type cobalami 100.0 2.3E-41 5E-46 364.1 20.7 203 162-378 2-230 (258)
175 cd03263 ABC_subfamily_A The AB 100.0 3.2E-41 6.8E-46 367.3 22.0 214 787-1008 1-219 (220)
176 cd03259 ABC_Carb_Solutes_like 100.0 2.6E-41 5.6E-46 366.0 21.1 206 787-1003 1-213 (213)
177 PRK13635 cbiO cobalt transport 100.0 5.8E-41 1.3E-45 377.0 24.4 215 786-1011 5-230 (279)
178 PRK09452 potA putrescine/sperm 100.0 5.8E-41 1.3E-45 388.5 25.0 216 786-1016 14-240 (375)
179 cd03295 ABC_OpuCA_Osmoprotecti 100.0 5.8E-41 1.3E-45 370.4 23.8 218 787-1012 1-227 (242)
180 PRK14242 phosphate transporter 100.0 8.9E-41 1.9E-45 371.5 25.2 218 786-1012 6-239 (253)
181 PRK13643 cbiO cobalt transport 100.0 7.3E-41 1.6E-45 378.0 24.8 217 787-1010 2-233 (288)
182 PRK14273 phosphate ABC transpo 100.0 1.1E-40 2.5E-45 370.8 26.0 219 786-1013 7-241 (254)
183 TIGR03522 GldA_ABC_ATP gliding 100.0 5.3E-41 1.2E-45 381.5 23.8 215 787-1011 3-222 (301)
184 TIGR02315 ABC_phnC phosphonate 100.0 6.8E-41 1.5E-45 370.3 23.8 220 787-1009 2-234 (243)
185 PRK13646 cbiO cobalt transport 100.0 7.5E-41 1.6E-45 377.7 24.5 218 787-1011 3-236 (286)
186 PRK11000 maltose/maltodextrin 100.0 5.4E-41 1.2E-45 390.2 23.9 217 787-1014 4-227 (369)
187 cd03258 ABC_MetN_methionine_tr 100.0 6.2E-41 1.3E-45 368.2 23.1 217 787-1010 2-230 (233)
188 cd03265 ABC_DrrA DrrA is the A 100.0 5.3E-41 1.2E-45 365.3 21.8 208 787-1008 1-219 (220)
189 PRK10744 pstB phosphate transp 100.0 1.7E-40 3.6E-45 370.5 26.1 219 785-1012 12-246 (260)
190 PRK14247 phosphate ABC transpo 100.0 1.3E-40 2.8E-45 369.6 24.8 218 786-1012 3-236 (250)
191 PRK13634 cbiO cobalt transport 100.0 1E-40 2.2E-45 377.2 24.2 218 787-1011 3-236 (290)
192 PRK13651 cobalt transporter AT 100.0 9.5E-41 2.1E-45 378.6 23.8 218 787-1011 3-255 (305)
193 PRK14259 phosphate ABC transpo 100.0 2.3E-40 5E-45 370.7 26.5 219 785-1012 12-255 (269)
194 cd03218 ABC_YhbG The ABC trans 100.0 8.3E-41 1.8E-45 367.0 22.4 215 787-1010 1-222 (232)
195 TIGR01288 nodI ATP-binding ABC 100.0 9.1E-41 2E-45 380.2 23.4 216 786-1011 4-225 (303)
196 PRK14267 phosphate ABC transpo 100.0 1.3E-40 2.9E-45 370.2 24.1 218 786-1012 4-239 (253)
197 PRK14235 phosphate transporter 100.0 2.2E-40 4.8E-45 370.6 26.0 220 784-1012 17-253 (267)
198 COG0411 LivG ABC-type branched 100.0 2.8E-41 6.1E-46 352.2 16.9 220 787-1012 5-241 (250)
199 cd03226 ABC_cobalt_CbiO_domain 100.0 8E-41 1.7E-45 359.9 21.1 198 788-1000 1-205 (205)
200 COG4615 PvdE ABC-type sideroph 100.0 4.9E-38 1.1E-42 341.8 42.8 460 516-1002 62-529 (546)
201 PRK13636 cbiO cobalt transport 100.0 1.7E-40 3.7E-45 374.2 24.7 217 786-1010 5-231 (283)
202 cd03268 ABC_BcrA_bacitracin_re 100.0 1.2E-40 2.5E-45 359.5 22.2 202 787-1003 1-208 (208)
203 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 8.1E-41 1.8E-45 363.5 21.1 206 787-999 1-218 (218)
204 PRK13652 cbiO cobalt transport 100.0 1.8E-40 3.9E-45 373.2 24.5 213 787-1011 4-228 (277)
205 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.6E-40 3.5E-45 365.4 23.5 215 787-1011 2-222 (236)
206 TIGR03411 urea_trans_UrtD urea 100.0 2.2E-40 4.9E-45 365.9 24.4 220 787-1010 3-231 (242)
207 PRK15079 oligopeptide ABC tran 100.0 2.2E-40 4.7E-45 379.2 25.1 226 786-1018 8-259 (331)
208 PRK11607 potG putrescine trans 100.0 1.5E-40 3.2E-45 385.9 23.8 221 786-1017 19-246 (377)
209 cd03264 ABC_drug_resistance_li 100.0 1.2E-40 2.5E-45 360.3 21.4 202 787-1003 1-211 (211)
210 PRK11629 lolD lipoprotein tran 100.0 2E-40 4.3E-45 364.0 23.4 212 786-1004 5-228 (233)
211 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.1E-40 2.5E-45 373.1 21.8 213 788-1013 26-253 (269)
212 PRK10070 glycine betaine trans 100.0 2E-40 4.3E-45 385.7 24.6 208 803-1017 43-261 (400)
213 cd03266 ABC_NatA_sodium_export 100.0 1.4E-40 3.1E-45 361.6 21.8 209 787-1003 2-218 (218)
214 PRK14274 phosphate ABC transpo 100.0 3.8E-40 8.2E-45 367.6 25.8 219 786-1013 12-246 (259)
215 PRK11264 putative amino-acid A 100.0 5.2E-40 1.1E-44 364.8 26.6 217 787-1012 4-235 (250)
216 PRK11831 putative ABC transpor 100.0 2E-40 4.4E-45 371.3 23.5 217 786-1011 7-234 (269)
217 PRK10895 lipopolysaccharide AB 100.0 2.5E-40 5.3E-45 365.3 23.8 215 787-1010 4-226 (241)
218 PRK10575 iron-hydroxamate tran 100.0 1.9E-40 4.1E-45 370.9 23.2 212 786-1010 11-237 (265)
219 PRK14268 phosphate ABC transpo 100.0 2.7E-40 5.8E-45 368.4 24.3 219 786-1013 12-245 (258)
220 PRK13644 cbiO cobalt transport 100.0 3.4E-40 7.3E-45 370.2 25.1 217 787-1011 2-225 (274)
221 PRK09493 glnQ glutamine ABC tr 100.0 3.7E-40 8E-45 363.6 24.7 216 787-1011 2-226 (240)
222 cd03301 ABC_MalK_N The N-termi 100.0 1.4E-40 3.1E-45 360.3 20.9 206 787-1003 1-213 (213)
223 TIGR03005 ectoine_ehuA ectoine 100.0 3.6E-40 7.7E-45 366.4 24.3 217 787-1012 1-238 (252)
224 PRK13632 cbiO cobalt transport 100.0 4.3E-40 9.3E-45 369.1 25.0 219 786-1011 7-232 (271)
225 PRK13640 cbiO cobalt transport 100.0 3.4E-40 7.3E-45 371.7 24.3 215 786-1011 5-233 (282)
226 cd03247 ABCC_cytochrome_bd The 100.0 2.9E-40 6.3E-45 347.2 22.2 178 787-1003 1-178 (178)
227 PRK14240 phosphate transporter 100.0 5.4E-40 1.2E-44 364.6 25.4 219 785-1012 2-236 (250)
228 PRK10619 histidine/lysine/argi 100.0 5.8E-40 1.2E-44 365.7 25.5 218 785-1011 4-242 (257)
229 PRK13641 cbiO cobalt transport 100.0 3.7E-40 8.1E-45 372.3 24.3 217 787-1010 3-234 (287)
230 PRK11614 livF leucine/isoleuci 100.0 4.3E-40 9.3E-45 362.4 24.1 217 786-1010 5-226 (237)
231 PRK13548 hmuV hemin importer A 100.0 6.1E-40 1.3E-44 365.2 25.5 211 787-1010 3-230 (258)
232 cd03250 ABCC_MRP_domain1 Domai 100.0 4.5E-40 9.7E-45 353.8 23.6 199 787-998 1-204 (204)
233 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.7E-40 3.6E-45 361.4 20.4 208 787-1006 1-219 (220)
234 PRK14245 phosphate ABC transpo 100.0 4.2E-40 9E-45 365.4 23.9 218 786-1012 3-236 (250)
235 cd03225 ABC_cobalt_CbiO_domain 100.0 2E-40 4.4E-45 358.5 20.8 204 788-998 1-211 (211)
236 PRK11231 fecE iron-dicitrate t 100.0 3.5E-40 7.7E-45 366.9 23.3 211 787-1010 3-227 (255)
237 COG1122 CbiO ABC-type cobalt t 100.0 2.4E-40 5.1E-45 357.0 21.1 205 161-378 2-230 (235)
238 PRK14248 phosphate ABC transpo 100.0 6.6E-40 1.4E-44 367.3 25.6 218 786-1012 21-254 (268)
239 TIGR03410 urea_trans_UrtE urea 100.0 2.4E-40 5.1E-45 362.8 21.4 211 787-1008 1-219 (230)
240 PRK14239 phosphate transporter 100.0 5.4E-40 1.2E-44 365.1 24.5 218 786-1012 5-238 (252)
241 COG1117 PstB ABC-type phosphat 100.0 7.2E-41 1.6E-45 339.1 15.7 207 161-378 6-239 (253)
242 PRK11308 dppF dipeptide transp 100.0 6.4E-40 1.4E-44 375.1 25.7 227 786-1019 5-253 (327)
243 COG3839 MalK ABC-type sugar tr 100.0 2.2E-40 4.8E-45 369.8 21.2 203 162-378 3-225 (338)
244 TIGR02211 LolD_lipo_ex lipopro 100.0 3.5E-40 7.5E-45 359.3 22.2 207 787-1000 2-220 (221)
245 PRK13649 cbiO cobalt transport 100.0 4.9E-40 1.1E-44 370.7 24.1 217 787-1010 3-234 (280)
246 TIGR01188 drrA daunorubicin re 100.0 2.7E-40 5.9E-45 376.1 22.1 207 795-1011 2-214 (302)
247 PRK10253 iron-enterobactin tra 100.0 4.5E-40 9.7E-45 367.9 23.5 212 786-1010 7-233 (265)
248 PRK14251 phosphate ABC transpo 100.0 5.5E-40 1.2E-44 364.7 23.8 219 786-1013 4-238 (251)
249 PRK14256 phosphate ABC transpo 100.0 9.2E-40 2E-44 363.1 25.4 220 785-1013 3-239 (252)
250 PRK14243 phosphate transporter 100.0 1.3E-39 2.7E-44 363.9 26.6 218 786-1012 10-250 (264)
251 cd03257 ABC_NikE_OppD_transpor 100.0 3.7E-40 8.1E-45 360.9 21.9 211 787-1003 2-228 (228)
252 PRK13642 cbiO cobalt transport 100.0 6.5E-40 1.4E-44 368.6 24.4 215 786-1011 4-230 (277)
253 PRK13633 cobalt transporter AT 100.0 6.9E-40 1.5E-44 369.0 24.4 215 786-1011 4-234 (280)
254 TIGR02769 nickel_nikE nickel i 100.0 9.9E-40 2.2E-44 365.1 25.5 218 787-1011 3-241 (265)
255 PRK14237 phosphate transporter 100.0 1.1E-39 2.4E-44 365.0 25.8 218 786-1012 20-253 (267)
256 PRK11247 ssuB aliphatic sulfon 100.0 8.7E-40 1.9E-44 362.3 24.7 203 786-1006 12-219 (257)
257 PRK11124 artP arginine transpo 100.0 7.9E-40 1.7E-44 361.5 24.2 215 787-1010 3-230 (242)
258 PRK11022 dppD dipeptide transp 100.0 8.9E-40 1.9E-44 374.1 25.3 225 787-1019 4-252 (326)
259 PRK14249 phosphate ABC transpo 100.0 1.4E-39 3E-44 361.4 26.1 218 786-1012 4-237 (251)
260 PRK14270 phosphate ABC transpo 100.0 1.2E-39 2.5E-44 362.1 25.4 218 786-1012 4-237 (251)
261 PRK14262 phosphate ABC transpo 100.0 8.1E-40 1.8E-44 363.2 24.2 218 786-1012 3-236 (250)
262 TIGR02673 FtsE cell division A 100.0 3.1E-40 6.8E-45 357.9 20.3 200 787-998 2-214 (214)
263 PRK14244 phosphate ABC transpo 100.0 5.2E-40 1.1E-44 364.9 22.4 218 787-1013 6-240 (251)
264 PRK14238 phosphate transporter 100.0 1.2E-39 2.5E-44 365.4 25.4 218 786-1012 24-257 (271)
265 PRK13638 cbiO cobalt transport 100.0 6.8E-40 1.5E-44 367.7 23.4 216 787-1011 2-226 (271)
266 PRK13645 cbiO cobalt transport 100.0 6.6E-40 1.4E-44 371.1 23.4 219 785-1010 5-240 (289)
267 PRK13648 cbiO cobalt transport 100.0 1.1E-39 2.4E-44 365.6 24.8 219 786-1011 7-232 (269)
268 PRK14261 phosphate ABC transpo 100.0 1.3E-39 2.8E-44 362.1 25.0 218 786-1012 6-239 (253)
269 cd03235 ABC_Metallic_Cations A 100.0 4E-40 8.6E-45 356.7 20.3 197 788-1003 1-213 (213)
270 cd03292 ABC_FtsE_transporter F 100.0 5.5E-40 1.2E-44 356.0 21.2 201 787-999 1-214 (214)
271 PRK14253 phosphate ABC transpo 100.0 1.7E-39 3.7E-44 360.4 25.6 217 786-1011 3-234 (249)
272 cd03246 ABCC_Protease_Secretio 100.0 9.6E-40 2.1E-44 341.5 22.1 172 787-999 1-173 (173)
273 cd03291 ABCC_CFTR1 The CFTR su 100.0 4.1E-39 9E-44 360.5 28.6 210 785-1011 38-248 (282)
274 PRK11300 livG leucine/isoleuci 100.0 1.3E-39 2.8E-44 362.7 24.3 221 786-1010 5-243 (255)
275 PRK14236 phosphate transporter 100.0 1.9E-39 4.1E-44 364.1 25.8 218 785-1011 24-257 (272)
276 TIGR03873 F420-0_ABC_ATP propo 100.0 1E-39 2.2E-44 363.5 23.4 220 787-1010 2-226 (256)
277 COG1118 CysA ABC-type sulfate/ 100.0 2.7E-40 5.9E-45 352.5 17.4 203 162-378 2-229 (345)
278 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.2E-39 2.7E-44 352.3 22.9 200 787-1003 1-211 (211)
279 COG4175 ProV ABC-type proline/ 100.0 6.2E-40 1.3E-44 349.3 20.0 222 786-1018 4-262 (386)
280 PRK14260 phosphate ABC transpo 100.0 1.6E-39 3.5E-44 362.3 24.4 219 786-1013 7-246 (259)
281 PRK10908 cell division protein 100.0 1.1E-39 2.4E-44 355.5 22.4 207 787-1001 2-217 (222)
282 COG1136 SalX ABC-type antimicr 100.0 1.1E-39 2.5E-44 344.3 21.6 193 163-366 2-221 (226)
283 PRK10584 putative ABC transpor 100.0 1.5E-39 3.3E-44 356.0 23.4 206 786-1002 6-227 (228)
284 cd03269 ABC_putative_ATPase Th 100.0 6.9E-40 1.5E-44 354.1 20.4 204 787-1003 1-210 (210)
285 PRK10247 putative ABC transpor 100.0 1.1E-39 2.4E-44 355.9 22.1 210 786-1006 7-223 (225)
286 PRK14241 phosphate transporter 100.0 1.8E-39 3.9E-44 361.9 24.3 218 786-1012 4-244 (258)
287 PRK10771 thiQ thiamine transpo 100.0 3.1E-39 6.6E-44 354.4 25.7 208 787-1011 2-220 (232)
288 COG3842 PotA ABC-type spermidi 100.0 3.7E-40 8.1E-45 369.9 18.8 204 161-378 4-228 (352)
289 PRK11701 phnK phosphonate C-P 100.0 4E-39 8.7E-44 359.1 26.9 219 786-1013 6-244 (258)
290 PRK14275 phosphate ABC transpo 100.0 1.7E-39 3.7E-44 366.5 24.1 219 786-1013 39-273 (286)
291 cd03290 ABCC_SUR1_N The SUR do 100.0 2E-39 4.4E-44 352.4 23.8 210 788-998 2-218 (218)
292 TIGR01257 rim_protein retinal- 100.0 4.9E-40 1.1E-44 434.2 22.7 225 785-1017 927-1156(2272)
293 PRK14254 phosphate ABC transpo 100.0 3.8E-39 8.2E-44 363.2 26.7 219 785-1012 38-271 (285)
294 PRK13639 cbiO cobalt transport 100.0 1.8E-39 3.9E-44 364.7 23.9 217 787-1011 2-227 (275)
295 TIGR03415 ABC_choXWV_ATP choli 100.0 1.4E-39 3E-44 375.9 23.5 209 802-1017 38-261 (382)
296 PRK14265 phosphate ABC transpo 100.0 4.1E-39 8.8E-44 361.4 26.4 218 786-1012 20-260 (274)
297 cd03262 ABC_HisP_GlnQ_permease 100.0 9.3E-40 2E-44 353.9 20.4 204 787-999 1-213 (213)
298 cd03252 ABCC_Hemolysin The ABC 100.0 5E-39 1.1E-43 354.0 26.3 220 163-384 1-233 (237)
299 PRK14252 phosphate ABC transpo 100.0 3.4E-39 7.3E-44 361.0 25.3 220 784-1012 14-251 (265)
300 TIGR00968 3a0106s01 sulfate AB 100.0 3E-39 6.5E-44 355.4 24.4 214 787-1011 1-221 (237)
301 PRK14271 phosphate ABC transpo 100.0 6.2E-39 1.3E-43 360.1 27.3 220 786-1012 21-253 (276)
302 PRK09473 oppD oligopeptide tra 100.0 5.1E-39 1.1E-43 368.1 27.1 226 786-1019 12-260 (330)
303 cd03300 ABC_PotA_N PotA is an 100.0 1.5E-39 3.3E-44 356.7 21.8 210 787-1011 1-221 (232)
304 PRK14266 phosphate ABC transpo 100.0 3.4E-39 7.3E-44 358.2 24.7 219 787-1014 4-238 (250)
305 PRK15093 antimicrobial peptide 100.0 2.5E-39 5.5E-44 371.7 24.4 224 787-1018 4-256 (330)
306 PRK14272 phosphate ABC transpo 100.0 4.3E-39 9.3E-44 357.9 25.4 219 786-1013 4-239 (252)
307 PRK15112 antimicrobial peptide 100.0 3.1E-39 6.8E-44 361.3 24.2 217 786-1012 4-241 (267)
308 COG3638 ABC-type phosphate/pho 100.0 8.3E-40 1.8E-44 337.8 17.7 202 161-375 2-236 (258)
309 COG2884 FtsE Predicted ATPase 100.0 6E-40 1.3E-44 326.7 16.0 194 162-368 1-218 (223)
310 PRK14263 phosphate ABC transpo 100.0 4.6E-39 9.9E-44 358.4 25.0 218 786-1012 8-247 (261)
311 PRK13547 hmuV hemin importer A 100.0 4.4E-39 9.5E-44 359.7 24.9 220 787-1010 2-244 (272)
312 PRK09984 phosphonate/organopho 100.0 4.7E-39 1E-43 359.4 24.3 219 786-1008 4-240 (262)
313 TIGR01978 sufC FeS assembly AT 100.0 3.1E-39 6.7E-44 357.1 22.7 215 787-1010 1-234 (243)
314 PRK11144 modC molybdate transp 100.0 3.8E-39 8.2E-44 373.1 24.0 211 787-1013 2-221 (352)
315 PRK14258 phosphate ABC transpo 100.0 5.5E-39 1.2E-43 358.3 24.3 219 786-1013 7-248 (261)
316 PRK00349 uvrA excinuclease ABC 100.0 2.1E-38 4.5E-43 398.9 32.3 102 912-1013 818-930 (943)
317 cd03291 ABCC_CFTR1 The CFTR su 100.0 3.4E-38 7.3E-43 353.2 30.2 234 138-378 16-249 (282)
318 PRK14255 phosphate ABC transpo 100.0 7.2E-39 1.6E-43 356.0 24.1 219 786-1013 5-239 (252)
319 TIGR01277 thiQ thiamine ABC tr 100.0 6.2E-39 1.4E-43 347.2 22.5 201 787-1004 1-212 (213)
320 PRK14264 phosphate ABC transpo 100.0 1.2E-38 2.6E-43 362.7 25.7 218 785-1011 44-290 (305)
321 cd03299 ABC_ModC_like Archeal 100.0 8.7E-39 1.9E-43 351.2 23.6 209 787-1011 1-220 (235)
322 PRK11248 tauB taurine transpor 100.0 6.2E-39 1.3E-43 356.1 22.5 206 787-1006 2-216 (255)
323 PRK14246 phosphate ABC transpo 100.0 1.1E-38 2.5E-43 354.4 24.6 219 786-1013 10-244 (257)
324 TIGR02314 ABC_MetN D-methionin 100.0 4.7E-39 1E-43 368.3 21.7 205 162-377 1-231 (343)
325 cd03228 ABCC_MRP_Like The MRP 100.0 9.1E-39 2E-43 333.5 21.7 171 787-998 1-171 (171)
326 COG3840 ThiQ ABC-type thiamine 100.0 4.6E-39 9.9E-44 317.3 17.7 200 163-378 2-221 (231)
327 COG4559 ABC-type hemin transpo 100.0 6.8E-39 1.5E-43 324.0 19.0 212 787-1011 2-231 (259)
328 TIGR03740 galliderm_ABC gallid 100.0 1.3E-38 2.8E-43 347.4 22.8 204 787-1007 1-210 (223)
329 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 2.8E-38 6E-43 348.3 25.7 215 163-378 1-228 (238)
330 PRK10418 nikD nickel transport 100.0 2.5E-38 5.4E-43 351.7 24.6 215 786-1013 4-233 (254)
331 COG1124 DppF ABC-type dipeptid 100.0 1.8E-38 4E-43 330.8 21.8 206 161-377 2-232 (252)
332 TIGR02323 CP_lyasePhnK phospho 100.0 1.9E-38 4.1E-43 352.9 23.5 219 786-1013 3-241 (253)
333 TIGR02142 modC_ABC molybdenum 100.0 1.5E-38 3.2E-43 368.8 23.5 213 791-1014 4-225 (354)
334 cd03250 ABCC_MRP_domain1 Domai 100.0 2.7E-38 5.8E-43 340.0 23.9 201 163-364 1-204 (204)
335 cd03251 ABCC_MsbA MsbA is an e 100.0 3.3E-38 7.2E-43 346.8 24.9 214 163-378 1-227 (234)
336 PRK10419 nikE nickel transport 100.0 3.9E-38 8.4E-43 352.5 25.7 223 787-1017 4-247 (268)
337 cd03253 ABCC_ATM1_transporter 100.0 4.9E-38 1.1E-42 345.9 25.9 218 163-383 1-231 (236)
338 cd03254 ABCC_Glucan_exporter_l 100.0 3.4E-38 7.4E-43 345.6 24.5 212 162-376 2-226 (229)
339 cd03229 ABC_Class3 This class 100.0 1.9E-38 4.1E-43 333.3 21.3 172 787-998 1-178 (178)
340 PRK13631 cbiO cobalt transport 100.0 3.7E-38 8E-43 359.5 24.8 211 159-379 18-268 (320)
341 PRK11650 ugpC glycerol-3-phosp 100.0 2.5E-38 5.5E-43 365.3 23.4 203 162-377 3-225 (356)
342 TIGR02982 heterocyst_DevA ABC 100.0 1.8E-38 3.8E-43 345.4 20.7 206 787-999 2-219 (220)
343 cd03261 ABC_Org_Solvent_Resist 100.0 2.1E-38 4.5E-43 348.6 21.5 201 163-377 1-227 (235)
344 cd03230 ABC_DR_subfamily_A Thi 100.0 2.2E-38 4.8E-43 331.2 20.6 170 787-999 1-173 (173)
345 cd03244 ABCC_MRP_domain2 Domai 100.0 6E-38 1.3E-42 341.7 24.5 206 163-370 3-220 (221)
346 PRK09544 znuC high-affinity zi 100.0 4.3E-38 9.3E-43 348.1 23.6 200 786-1010 4-209 (251)
347 cd03234 ABCG_White The White s 100.0 2E-38 4.3E-43 346.5 20.7 212 787-1003 4-226 (226)
348 cd03297 ABC_ModC_molybdenum_tr 100.0 3E-38 6.5E-43 342.2 21.8 201 791-1003 5-214 (214)
349 COG0444 DppD ABC-type dipeptid 100.0 3.5E-38 7.7E-43 343.4 21.9 228 787-1022 2-255 (316)
350 cd03288 ABCC_SUR2 The SUR doma 100.0 1.2E-37 2.7E-42 346.6 26.8 223 161-385 18-253 (257)
351 PRK11432 fbpC ferric transport 100.0 3.7E-38 8.1E-43 362.9 23.1 203 161-377 5-227 (351)
352 PRK00635 excinuclease ABC subu 100.0 5.4E-37 1.2E-41 399.4 36.6 211 786-1011 600-907 (1809)
353 cd03217 ABC_FeS_Assembly ABC-t 100.0 7.7E-38 1.7E-42 334.9 22.5 185 787-1009 1-192 (200)
354 PRK15056 manganese/iron transp 100.0 7.9E-38 1.7E-42 351.0 23.5 209 786-1010 6-230 (272)
355 PRK13537 nodulation ABC transp 100.0 5.4E-38 1.2E-42 356.9 22.3 202 161-376 6-227 (306)
356 cd03233 ABC_PDR_domain1 The pl 100.0 5.6E-38 1.2E-42 336.4 21.2 189 787-1003 4-202 (202)
357 PRK13651 cobalt transporter AT 100.0 8.9E-38 1.9E-42 354.3 24.0 206 162-378 2-256 (305)
358 PRK13650 cbiO cobalt transport 100.0 7.1E-38 1.5E-42 352.3 22.9 205 162-377 4-230 (279)
359 TIGR03265 PhnT2 putative 2-ami 100.0 5.9E-38 1.3E-42 361.9 22.0 203 161-377 3-225 (353)
360 cd03214 ABC_Iron-Siderophores_ 100.0 5.1E-38 1.1E-42 330.7 19.6 177 788-1003 1-180 (180)
361 cd03245 ABCC_bacteriocin_expor 100.0 2E-37 4.4E-42 337.3 24.9 206 162-369 2-220 (220)
362 cd03213 ABCG_EPDR ABCG transpo 100.0 7E-38 1.5E-42 333.5 20.2 182 786-1003 3-194 (194)
363 PRK13643 cbiO cobalt transport 100.0 1.2E-37 2.7E-42 351.7 23.3 206 162-377 1-234 (288)
364 PRK13637 cbiO cobalt transport 100.0 1E-37 2.2E-42 352.2 22.5 207 162-377 2-235 (287)
365 COG4152 ABC-type uncharacteriz 100.0 1.6E-38 3.4E-43 327.5 13.9 215 786-1013 2-222 (300)
366 PRK09452 potA putrescine/sperm 100.0 1.3E-37 2.7E-42 360.7 23.2 203 161-377 13-235 (375)
367 PRK15439 autoinducer 2 ABC tra 100.0 2.2E-37 4.8E-42 377.3 26.4 215 786-1010 11-229 (510)
368 TIGR00960 3a0501s02 Type II (G 100.0 5.9E-38 1.3E-42 340.5 18.9 191 163-365 2-216 (216)
369 cd03215 ABC_Carb_Monos_II This 100.0 8.6E-38 1.9E-42 329.6 19.5 172 786-999 4-182 (182)
370 COG4619 ABC-type uncharacteriz 100.0 4.3E-38 9.4E-43 306.1 15.5 194 796-999 11-212 (223)
371 CHL00131 ycf16 sulfate ABC tra 100.0 2.5E-37 5.4E-42 343.7 23.8 217 786-1008 7-239 (252)
372 PRK11153 metN DL-methionine tr 100.0 1.2E-37 2.6E-42 359.3 21.8 205 162-377 1-231 (343)
373 cd03267 ABC_NatA_like Similar 100.0 8.6E-38 1.9E-42 343.4 19.5 195 801-1003 34-236 (236)
374 TIGR03608 L_ocin_972_ABC putat 100.0 8.5E-38 1.8E-42 336.8 19.1 197 789-994 1-206 (206)
375 cd03259 ABC_Carb_Solutes_like 100.0 1.1E-37 2.3E-42 337.7 19.7 193 163-369 1-213 (213)
376 PRK13647 cbiO cobalt transport 100.0 1.7E-37 3.8E-42 348.2 22.0 200 162-374 4-225 (274)
377 cd03296 ABC_CysA_sulfate_impor 100.0 2.5E-37 5.4E-42 340.8 22.8 201 162-376 2-226 (239)
378 PRK10851 sulfate/thiosulfate t 100.0 2.3E-37 4.9E-42 357.0 23.4 202 162-377 2-227 (353)
379 PRK09536 btuD corrinoid ABC tr 100.0 2.4E-37 5.2E-42 360.1 23.6 202 162-377 3-229 (402)
380 PRK13536 nodulation factor exp 100.0 1.8E-37 3.8E-42 356.2 22.2 203 160-376 39-261 (340)
381 cd03232 ABC_PDR_domain2 The pl 100.0 1.3E-37 2.8E-42 331.0 19.4 181 786-1003 3-192 (192)
382 PRK03695 vitamin B12-transport 100.0 3.4E-37 7.4E-42 341.1 23.5 209 788-1010 2-222 (248)
383 cd03219 ABC_Mj1267_LivG_branch 100.0 1.5E-37 3.2E-42 342.2 20.4 200 163-376 1-232 (236)
384 COG4598 HisP ABC-type histidin 100.0 1E-37 2.2E-42 306.3 16.8 220 786-1014 6-245 (256)
385 TIGR00630 uvra excinuclease AB 100.0 1.8E-36 3.8E-41 380.8 32.7 97 912-1008 816-923 (924)
386 TIGR03258 PhnT 2-aminoethylpho 100.0 1.6E-37 3.6E-42 358.6 21.6 202 162-377 5-229 (362)
387 PRK13634 cbiO cobalt transport 100.0 3.4E-37 7.4E-42 348.5 23.5 206 163-378 3-237 (290)
388 PRK11000 maltose/maltodextrin 100.0 2.2E-37 4.8E-42 360.0 22.5 202 162-377 3-224 (369)
389 PRK13646 cbiO cobalt transport 100.0 3.3E-37 7.1E-42 348.1 23.1 207 162-378 2-237 (286)
390 COG4555 NatA ABC-type Na+ tran 100.0 5.9E-38 1.3E-42 314.8 15.0 203 162-377 1-223 (245)
391 PRK13549 xylose transporter AT 100.0 2.5E-37 5.4E-42 377.1 23.9 215 786-1009 5-231 (506)
392 PRK09700 D-allose transporter 100.0 2.2E-37 4.8E-42 378.2 23.4 215 786-1009 5-233 (510)
393 cd03216 ABC_Carb_Monos_I This 100.0 3.7E-37 8E-42 318.4 21.5 159 787-1001 1-162 (163)
394 cd03223 ABCD_peroxisomal_ALDP 100.0 2.8E-37 6.1E-42 320.3 20.6 163 787-997 1-163 (166)
395 PRK10762 D-ribose transporter 100.0 2.9E-37 6.3E-42 376.0 24.1 215 786-1009 4-229 (501)
396 PRK09580 sufC cysteine desulfu 100.0 2.9E-37 6.3E-42 342.4 21.9 218 787-1008 2-233 (248)
397 PRK11247 ssuB aliphatic sulfon 100.0 4.6E-37 9.9E-42 340.6 23.4 198 161-372 11-219 (257)
398 PRK11629 lolD lipoprotein tran 100.0 3.3E-37 7.2E-42 338.5 22.1 199 161-370 4-228 (233)
399 TIGR02770 nickel_nikD nickel i 100.0 3.1E-37 6.6E-42 338.0 21.7 202 803-1013 1-218 (230)
400 cd03226 ABC_cobalt_CbiO_domain 100.0 2.6E-37 5.6E-42 332.6 20.4 189 165-366 2-205 (205)
401 PRK13635 cbiO cobalt transport 100.0 6.5E-37 1.4E-41 344.2 24.4 206 161-378 4-231 (279)
402 cd03260 ABC_PstB_phosphate_tra 100.0 2.7E-37 5.8E-42 338.0 20.7 198 163-373 1-226 (227)
403 cd03231 ABC_CcmA_heme_exporter 100.0 4.2E-37 9.1E-42 329.7 21.7 194 787-994 1-198 (201)
404 COG1131 CcmA ABC-type multidru 100.0 3.4E-37 7.5E-42 346.9 22.0 202 162-376 4-226 (293)
405 TIGR01288 nodI ATP-binding ABC 100.0 3.8E-37 8.2E-42 350.5 22.6 201 162-376 4-224 (303)
406 COG1123 ATPase components of v 100.0 3E-37 6.5E-42 359.6 22.0 228 786-1022 5-256 (539)
407 cd03265 ABC_DrrA DrrA is the A 100.0 3E-37 6.4E-42 335.9 20.4 198 163-374 1-219 (220)
408 TIGR02315 ABC_phnC phosphonate 100.0 3.6E-37 7.9E-42 340.6 21.4 199 163-374 2-233 (243)
409 cd03258 ABC_MetN_methionine_tr 100.0 4E-37 8.6E-42 338.0 21.3 203 163-376 2-230 (233)
410 PRK14250 phosphate ABC transpo 100.0 1.1E-36 2.4E-41 335.9 24.8 203 162-377 3-222 (241)
411 cd03293 ABC_NrtD_SsuB_transpor 100.0 3.3E-37 7.2E-42 335.5 20.4 198 163-371 1-218 (220)
412 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 2.4E-37 5.1E-42 336.3 19.2 192 163-365 1-218 (218)
413 PRK13644 cbiO cobalt transport 100.0 5.6E-37 1.2E-41 344.1 22.8 202 163-377 2-225 (274)
414 PRK11607 potG putrescine trans 100.0 4.9E-37 1.1E-41 356.5 22.9 204 160-377 17-240 (377)
415 TIGR01184 ntrCD nitrate transp 100.0 2.1E-37 4.6E-42 338.9 18.7 194 804-1009 1-203 (230)
416 cd03268 ABC_BcrA_bacitracin_re 100.0 5.9E-37 1.3E-41 330.7 21.7 193 163-369 1-208 (208)
417 PRK13538 cytochrome c biogenes 100.0 4.6E-37 1E-41 330.2 20.8 194 787-994 2-202 (204)
418 cd03256 ABC_PhnC_transporter A 100.0 4.9E-37 1.1E-41 339.2 21.0 199 163-374 1-232 (241)
419 PRK13636 cbiO cobalt transport 100.0 8.4E-37 1.8E-41 344.3 23.2 205 161-378 4-233 (283)
420 cd03290 ABCC_SUR1_N The SUR do 100.0 1.2E-36 2.5E-41 330.8 23.3 199 164-364 2-218 (218)
421 COG4178 ABC-type uncharacteriz 100.0 9.6E-34 2.1E-38 334.2 49.7 466 505-995 89-587 (604)
422 COG0410 LivF ABC-type branched 100.0 6E-37 1.3E-41 317.5 19.7 213 161-380 2-230 (237)
423 cd03218 ABC_YhbG The ABC trans 100.0 7.4E-37 1.6E-41 335.7 21.7 200 163-376 1-222 (232)
424 PRK10938 putative molybdenum t 100.0 7.2E-37 1.6E-41 372.1 23.7 210 787-1010 4-224 (490)
425 TIGR01186 proV glycine betaine 100.0 3.9E-37 8.4E-42 354.3 20.0 190 177-377 5-220 (363)
426 cd03235 ABC_Metallic_Cations A 100.0 5.3E-37 1.1E-41 332.3 19.9 189 165-368 2-212 (213)
427 PRK13641 cbiO cobalt transport 100.0 1.2E-36 2.6E-41 343.8 23.4 205 162-377 2-235 (287)
428 cd03301 ABC_MalK_N The N-termi 100.0 6.3E-37 1.4E-41 331.7 20.1 193 163-369 1-213 (213)
429 cd03248 ABCC_TAP TAP, the Tran 100.0 1.3E-36 2.8E-41 332.4 22.7 204 161-365 10-226 (226)
430 cd03266 ABC_NatA_sodium_export 100.0 8.5E-37 1.8E-41 332.0 20.9 196 163-369 2-218 (218)
431 cd03224 ABC_TM1139_LivF_branch 100.0 9.7E-37 2.1E-41 332.5 21.4 200 163-375 1-220 (222)
432 cd03369 ABCC_NFT1 Domain 2 of 100.0 2.2E-36 4.8E-41 325.9 23.8 190 161-370 5-206 (207)
433 COG1137 YhbG ABC-type (unclass 100.0 3.3E-38 7.1E-43 316.3 8.6 205 162-380 4-232 (243)
434 TIGR02211 LolD_lipo_ex lipopro 100.0 9.4E-37 2E-41 332.3 20.9 193 163-366 2-220 (221)
435 COG4181 Predicted ABC-type tra 100.0 5.1E-37 1.1E-41 299.6 16.7 206 786-1002 6-227 (228)
436 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 1.1E-36 2.5E-41 334.9 21.7 201 163-377 2-222 (236)
437 PRK10982 galactose/methyl gala 100.0 7.3E-37 1.6E-41 371.9 22.1 212 789-1009 1-222 (491)
438 PRK14273 phosphate ABC transpo 100.0 1.7E-36 3.6E-41 337.3 23.2 206 161-377 6-239 (254)
439 PRK14242 phosphate transporter 100.0 1.3E-36 2.8E-41 338.1 22.2 207 160-377 4-238 (253)
440 PRK13540 cytochrome c biogenes 100.0 1.1E-36 2.5E-41 326.1 20.9 195 787-993 2-198 (200)
441 PRK10584 putative ABC transpor 100.0 1.5E-36 3.3E-41 332.3 22.2 196 161-367 5-226 (228)
442 PRK13633 cobalt transporter AT 100.0 2.2E-36 4.7E-41 340.6 24.0 206 162-378 4-235 (280)
443 PRK13543 cytochrome c biogenes 100.0 1.8E-36 3.8E-41 328.1 22.3 195 786-996 11-212 (214)
444 PRK11831 putative ABC transpor 100.0 1.1E-36 2.4E-41 341.1 21.4 203 161-377 6-234 (269)
445 PRK11264 putative amino-acid A 100.0 9.3E-37 2E-41 338.7 20.3 202 162-377 3-234 (250)
446 PRK13640 cbiO cobalt transport 100.0 2.1E-36 4.6E-41 340.9 23.4 204 162-377 5-233 (282)
447 PRK13642 cbiO cobalt transport 100.0 2.5E-36 5.4E-41 339.6 23.7 205 162-377 4-230 (277)
448 cd03294 ABC_Pro_Gly_Bertaine T 100.0 9.5E-37 2.1E-41 341.5 20.3 200 164-377 26-251 (269)
449 PRK13632 cbiO cobalt transport 100.0 2.4E-36 5.2E-41 338.8 23.4 205 161-377 6-232 (271)
450 TIGR00972 3a0107s01c2 phosphat 100.0 1.9E-36 4E-41 335.5 22.2 204 162-376 1-232 (247)
451 PRK09493 glnQ glutamine ABC tr 100.0 1.9E-36 4.2E-41 334.0 22.1 201 163-377 2-226 (240)
452 cd03263 ABC_subfamily_A The AB 100.0 1.6E-36 3.5E-41 330.3 21.0 199 163-374 1-219 (220)
453 cd03269 ABC_putative_ATPase Th 100.0 1.4E-36 3E-41 328.2 20.3 193 163-369 1-210 (210)
454 TIGR02673 FtsE cell division A 100.0 9.6E-37 2.1E-41 330.6 18.9 189 163-364 2-214 (214)
455 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.4E-36 3.1E-41 335.4 20.4 203 163-376 1-225 (242)
456 PRK11288 araG L-arabinose tran 100.0 1.7E-36 3.7E-41 369.3 23.1 211 786-1005 4-224 (501)
457 PRK10619 histidine/lysine/argi 100.0 2.4E-36 5.2E-41 336.6 21.7 202 162-376 5-241 (257)
458 PRK14269 phosphate ABC transpo 100.0 2.3E-36 4.9E-41 334.6 21.3 204 162-376 2-230 (246)
459 PRK13638 cbiO cobalt transport 100.0 2.7E-36 5.8E-41 338.6 22.2 201 163-377 2-226 (271)
460 PRK11614 livF leucine/isoleuci 100.0 4.4E-36 9.4E-41 330.6 23.3 203 161-377 4-227 (237)
461 PRK15079 oligopeptide ABC tran 100.0 2.7E-36 5.9E-41 345.5 22.5 207 161-377 7-252 (331)
462 PRK11124 artP arginine transpo 100.0 2.9E-36 6.4E-41 333.0 21.9 200 162-375 2-229 (242)
463 PRK13649 cbiO cobalt transport 100.0 3E-36 6.4E-41 340.0 22.4 206 162-377 2-235 (280)
464 COG4608 AppF ABC-type oligopep 100.0 1.9E-36 4E-41 323.5 19.4 198 786-1023 4-212 (268)
465 TIGR02633 xylG D-xylose ABC tr 100.0 2.3E-36 4.9E-41 368.6 23.0 213 787-1008 2-228 (500)
466 PRK13652 cbiO cobalt transport 100.0 4.1E-36 8.9E-41 337.8 23.3 203 162-377 3-228 (277)
467 PRK13645 cbiO cobalt transport 100.0 3.4E-36 7.4E-41 340.8 22.6 207 162-378 6-242 (289)
468 PRK11231 fecE iron-dicitrate t 100.0 3.6E-36 7.8E-41 334.8 22.3 201 162-376 2-227 (255)
469 PRK10895 lipopolysaccharide AB 100.0 5E-36 1.1E-40 331.0 23.2 201 162-376 3-226 (241)
470 TIGR03522 GldA_ABC_ATP gliding 100.0 2.4E-36 5.2E-41 343.4 21.2 200 162-376 2-221 (301)
471 TIGR03411 urea_trans_UrtD urea 100.0 4.7E-36 1E-40 331.4 23.0 200 162-376 2-231 (242)
472 PRK13548 hmuV hemin importer A 100.0 6.2E-36 1.4E-40 333.0 24.0 201 162-376 2-230 (258)
473 PRK11300 livG leucine/isoleuci 100.0 4.2E-36 9E-41 334.5 22.6 202 162-377 5-244 (255)
474 PRK00635 excinuclease ABC subu 100.0 1.6E-34 3.5E-39 376.4 40.8 94 917-1010 1381-1483(1809)
475 PRK13648 cbiO cobalt transport 100.0 5.4E-36 1.2E-40 335.7 23.6 205 161-377 6-232 (269)
476 cd03292 ABC_FtsE_transporter F 100.0 1.7E-36 3.7E-41 328.7 18.8 190 163-365 1-214 (214)
477 PRK13539 cytochrome c biogenes 100.0 4E-36 8.6E-41 323.6 21.5 193 787-996 3-200 (207)
478 cd03264 ABC_drug_resistance_li 100.0 2.9E-36 6.2E-41 326.1 20.5 191 163-369 1-211 (211)
479 PRK10744 pstB phosphate transp 100.0 5.2E-36 1.1E-40 334.3 23.2 206 161-377 12-245 (260)
480 PRK13639 cbiO cobalt transport 100.0 3.4E-36 7.3E-41 338.2 21.7 202 163-377 2-227 (275)
481 PRK10261 glutathione transport 100.0 3E-36 6.4E-41 374.6 23.4 224 786-1016 12-264 (623)
482 PRK10070 glycine betaine trans 100.0 3E-36 6.6E-41 350.7 22.0 205 162-377 4-255 (400)
483 PRK15134 microcin C ABC transp 100.0 5.4E-36 1.2E-40 367.3 25.2 220 786-1012 5-248 (529)
484 PRK10575 iron-hydroxamate tran 100.0 4.6E-36 1E-40 335.5 22.4 202 161-376 10-237 (265)
485 TIGR03410 urea_trans_UrtE urea 100.0 3.1E-36 6.7E-41 330.3 20.5 199 163-374 1-219 (230)
486 cd03225 ABC_cobalt_CbiO_domain 100.0 2.3E-36 5E-41 326.9 19.1 189 164-364 1-211 (211)
487 TIGR03005 ectoine_ehuA ectoine 100.0 4.2E-36 9.2E-41 333.7 21.6 201 163-377 1-237 (252)
488 PRK14248 phosphate ABC transpo 100.0 8.3E-36 1.8E-40 334.2 24.1 208 159-377 18-253 (268)
489 TIGR01188 drrA daunorubicin re 100.0 2.1E-36 4.6E-41 344.2 19.6 188 178-376 6-213 (302)
490 TIGR03740 galliderm_ABC gallid 100.0 5.6E-36 1.2E-40 326.6 22.0 197 163-373 1-210 (223)
491 cd03298 ABC_ThiQ_thiamine_tran 100.0 5.1E-36 1.1E-40 324.1 21.2 191 163-369 1-211 (211)
492 PRK10908 cell division protein 100.0 3.9E-36 8.4E-41 327.6 20.4 192 163-367 2-217 (222)
493 PRK14274 phosphate ABC transpo 100.0 5.8E-36 1.3E-40 333.9 22.3 206 161-377 11-244 (259)
494 COG4604 CeuD ABC-type enteroch 100.0 5.6E-37 1.2E-41 306.2 12.5 212 787-1011 2-226 (252)
495 PRK11248 tauB taurine transpor 100.0 6.8E-36 1.5E-40 331.8 22.6 195 163-371 2-215 (255)
496 PRK10771 thiQ thiamine transpo 100.0 1.5E-35 3.2E-40 325.2 25.0 200 163-378 2-221 (232)
497 PRK14268 phosphate ABC transpo 100.0 6E-36 1.3E-40 333.4 22.2 206 161-377 11-243 (258)
498 TIGR01189 ccmA heme ABC export 100.0 3.3E-36 7.1E-41 322.2 19.3 192 787-993 1-197 (198)
499 TIGR03415 ABC_choXWV_ATP choli 100.0 3.9E-36 8.5E-41 347.3 21.2 189 178-377 37-255 (382)
500 COG1129 MglA ABC-type sugar tr 100.0 5.7E-36 1.2E-40 346.9 22.3 215 786-1004 8-228 (500)
No 1
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.5e-171 Score=1698.45 Aligned_cols=1169 Identities=87% Similarity=1.310 Sum_probs=1016.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 2 FPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSI 81 (1171)
Q Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~ 81 (1171)
+|++.++.+++++.+++.++.+|+|.+.++|+++||++||+|+||+.+.+++++.|++|++..++..++..+..++...+
T Consensus 454 ~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~ 533 (1622)
T PLN03130 454 FPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSI 533 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888899999999999999999999999999999999999999999999999999999999999888888877777777
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCC
Q 001055 82 PVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLP 161 (1171)
Q Consensus 82 ~~~~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~ 161 (1171)
+.++.+++||+|.+.+|.+|++.+|++++++..+..|+..+|..+..+.++++|++||++|+..++....++++......
T Consensus 534 ~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~~~~~~~~~ 613 (1622)
T PLN03130 534 PVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPNPPLEPGLP 613 (1622)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCCcccCCCC
Confidence 77777888999999999999999999999999999999999999999999999999999999876542222222112234
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcc
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNA 241 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~ 241 (1171)
.|+++|++|+|+.+.++++|+|+||++++|++++|+||+|||||||+++|+|+++|++|+...+++.|+||+|+||+|++
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~Lfng 693 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNA 693 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCC
Confidence 69999999999854457899999999999999999999999999999999999999984445578899999999999999
Q ss_pred cHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCH
Q 001055 242 TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 321 (1171)
Q Consensus 242 Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~ 321 (1171)
||+|||.||.++++++|+++++.|++.++++.+|+|++|.+|++|.+|||||||||+||||||++|+|||||||||+||+
T Consensus 694 TIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~ 773 (1622)
T PLN03130 694 TVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDA 773 (1622)
T ss_pred CHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHHHhchhhhhhhccccC
Q 001055 322 HVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDG 401 (1171)
Q Consensus 322 ~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1171)
++.+++++.+++...+++|+|+|||+++.++.+|+|++|++|+++++|+++++.+..+.|..+..+.+..++..++..+.
T Consensus 774 ~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~ 853 (1622)
T PLN03130 774 HVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNGPLFQKLMENAGKMEEYVEENGEE 853 (1622)
T ss_pred HHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhcchhHHHHHHhcccccccccccccc
Confidence 99999998887655678999999999999999999999999999999999999988777887776543221111100000
Q ss_pred ccccCCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhccccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 001055 402 ETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRV 481 (1171)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~y~~~~~~~~~~~~~~~~~~l~~~~~~ 481 (1171)
. .......+.........+.........+..+......+.++.|.+++.+|++|+++.++.+.++++++++++.+.+..
T Consensus 854 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~ 932 (1622)
T PLN03130 854 E-DDQTSSKPVANGNANNLKKDSSSKKKSKEGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRV 932 (1622)
T ss_pred c-ccccccccccccccccccccccccccccccchhhhhHHHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 0 000000000000000000000000000111122334566678889999999999998877777777777778888888
Q ss_pred hHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHH
Q 001055 482 SSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRI 561 (1171)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~i 561 (1171)
..++|+++|.+..........++..+|++++++..++.+++.++....+.+++.++|++++++++++|+.||+++++|++
T Consensus 933 ~~~~wl~~w~~~~~~~~~~~~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~I 1012 (1622)
T PLN03130 933 SSSTWLSEWTDQGTPKTHGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRI 1012 (1622)
T ss_pred HHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHH
Confidence 99999999988654333345667778888888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Q 001055 562 INRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVY 641 (1171)
Q Consensus 562 i~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 641 (1171)
+||+++|++.+|..++..+..++..++.++..+++++++.++.+++++|++++++..+.++.+..++.++.....+++++
T Consensus 1013 lnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~ 1092 (1622)
T PLN03130 1013 INRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVY 1092 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 99999999999999999888999888888888888888888777888888777777777888888999999999999999
Q ss_pred HHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHH
Q 001055 642 AQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFA 721 (1171)
Q Consensus 642 ~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 721 (1171)
+++.|+++|+.+||+|+.++++.+.+.+..+...+..+.....++|+.+.+.+++.+++++++.+.+...+.......+.
T Consensus 1093 ~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~ 1172 (1622)
T PLN03130 1093 AQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFA 1172 (1622)
T ss_pred HHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhhh
Confidence 99999999999999999999999999999999988888888889999998888888777777666665544333334556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCCCC
Q 001055 722 STMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELP 801 (1171)
Q Consensus 722 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~ 801 (1171)
..+|.++++...+..++.++.+.....++.+.+++|+.++.+.|+|.+...+...+++.||..|.|+|+||+|+|+++.+
T Consensus 1173 ~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~ 1252 (1622)
T PLN03130 1173 STMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELP 1252 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCC
Confidence 78899999999999999999999999999999999999999988776543333344556888899999999999976656
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhh
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN 881 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~n 881 (1171)
++|+|+||+|+|||+||||||||||||||+++|+|+++|++|+|.+||+|+++++++++|++|++|||||.+|++|||+|
T Consensus 1253 ~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreN 1332 (1622)
T PLN03130 1253 PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFN 1332 (1622)
T ss_pred ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHH
Q 001055 882 LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 961 (1171)
Q Consensus 882 l~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~ 961 (1171)
|+++.+++|++++++++.++++++++++|.|+||.++++|.+|||||||||||||||+++|+|||||||||+||++|++.
T Consensus 1333 Ld~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~ 1412 (1622)
T PLN03130 1333 LDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDAL 1412 (1622)
T ss_pred hCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHH
Confidence 99988889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHhhchhhHHHHHHHhhcccch
Q 001055 962 IQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLVLGGEAE 1041 (1171)
Q Consensus 962 i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1041 (1171)
|++.|++.+++||+|+||||++++.+||||+||++|+|+|.|+|+||++++++.|+++++.++..+.+++.....+.+.+
T Consensus 1413 Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~~~~~~~l~~~a~~~~~~ 1492 (1622)
T PLN03130 1413 IQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTGAANAQYLRSLVFGGDED 1492 (1622)
T ss_pred HHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcChhhhHHHHHHHhccccc
Confidence 99999999899999999999999999999999999999999999999998778999999988877666665554222222
Q ss_pred hhhhhhhhhhcccchhhccchhhHHhhhhhhhhcccccccchhchhhhhhhHHHhhhhhHHHHHhhcccCchhHHHHhhh
Q 001055 1042 NKLREENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLEVEDQNNILKKTKDAVVTLQGVLEGKHDKEIEESLN 1121 (1171)
Q Consensus 1042 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1121 (1171)
.....+....+.+.++....+|+..++++++.++++++++++.+++++.+++++++|+++.++++|.+|+||+.+.+.+.
T Consensus 1493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1572 (1622)
T PLN03130 1493 RLAREESKALDGQRKWLASSRWAAAAQFALAVSLTSSQNDLQSLEIEDENSILEKTKDAVITLQSVLEGKHDKEIDESLN 1572 (1622)
T ss_pred cccccchhcccchhhHHHhhhcccchhhhhhhhccccccchhccccCCchhhhhhhhhhHhHHHHhhccccccccchhhh
Confidence 22233344567788888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccCchhHHHHHHHHHhhhhhhhHhhhhccccCCCCCCCccccccccCC
Q 001055 1122 QHEVSTDGWWSALYRMIEGLSVMSRLARNRLHQSDYDLEERSIDWDHVEM 1171 (1171)
Q Consensus 1122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1171 (1171)
++++++|+||+++|+|+||+++|+|+++||.||++|++|+.++|||++||
T Consensus 1573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1622 (1622)
T PLN03130 1573 QRQVPRDGWWSSLYRMVEGLAVMSRLARNRMQQSDHNFEGKSIDWDNVEM 1622 (1622)
T ss_pred hccCCcccchHHHHHHHhccccchhHHHHhhccCcccccCCcCChhhhcC
Confidence 99999999999999999999999999999999999999999999999997
No 2
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.4e-171 Score=1610.10 Aligned_cols=1013 Identities=52% Similarity=0.873 Sum_probs=919.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 1 MFPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNS 80 (1171)
Q Consensus 1 ~~p~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~ 80 (1171)
++|+|.++++++++++++.|+.+|+|+++++|+|+|||+||+|+||+.|.+++++.|++|++++||..++.++..+++.+
T Consensus 354 ~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~ 433 (1381)
T KOG0054|consen 354 LIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFF 433 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCC--CCC
Q 001055 81 IPVLVTVVSFGMFT-LLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP--PLT 157 (1171)
Q Consensus 81 ~~~~~~~~~~g~~~-~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~--~~~ 157 (1171)
+|+++.+++|++|. ..++.+++..+|+++++|+.++.|+.++|..+..+.++.+|++|+++||..+|......+ +..
T Consensus 434 ~p~lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~~~~~ 513 (1381)
T KOG0054|consen 434 SPVLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVERSPDE 513 (1381)
T ss_pred HHHHHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccCCCC
Confidence 99999999999998 667889999999999999999999999999999999999999999999998875433332 334
Q ss_pred CCCCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCC
Q 001055 158 SGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSW 237 (1171)
Q Consensus 158 ~~~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~ 237 (1171)
++...|+++|.+|+|++....+.|+||||+|++|+.+||||+.|||||+||.+|+|+++..+|.+. .++.++||||.||
T Consensus 514 ~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~-v~gsiaYv~Q~pW 592 (1381)
T KOG0054|consen 514 AGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVA-VNGSVAYVPQQPW 592 (1381)
T ss_pred CCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEE-EcCeEEEeccccH
Confidence 455679999999999875556799999999999999999999999999999999999999987554 5667999999999
Q ss_pred CCcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCC
Q 001055 238 IFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS 317 (1171)
Q Consensus 238 l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts 317 (1171)
++++||||||+||.++++++|++++++|+|.+|++.+|.||.|.|||+|.+|||||||||+||||+|+|+||++||||+|
T Consensus 593 I~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplS 672 (1381)
T KOG0054|consen 593 IQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLS 672 (1381)
T ss_pred hhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHHHhchhhhhhhc
Q 001055 318 ALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEE 397 (1171)
Q Consensus 318 ~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 397 (1171)
++|+++.++|++.|++...++||+|+|||.++++++||+|++|++|+|.++|+++|+++.+..+.++..+....... +
T Consensus 673 AVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~~~~~~~~~-~- 750 (1381)
T KOG0054|consen 673 AVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKSGGDFAELAHEEESEQEE-E- 750 (1381)
T ss_pred hhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhcchhHHHHhhccchhhcc-c-
Confidence 99999999999999988888999999999999999999999999999999999999998887777763322111100 0
Q ss_pred cccCccccCCCCCCCCC-CCCCCCCCccccccccccccchhhhhhhhccccchHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001055 398 KEDGETVDNKTSKPAAN-GVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLT 476 (1171)
Q Consensus 398 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~y~~~~~~~~~~~~~~~~~~l~ 476 (1171)
...........+.... ................+.........++++.|.++|++|++|+++.++++.+++++++.++.
T Consensus 751 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~ 829 (1381)
T KOG0054|consen 751 -ASEKDLESGESSRESESRSLESLSSEEEKSKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLT 829 (1381)
T ss_pred -cccccccccccccchhhhhhhhhcccccccccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 0000000000000000 00000000000001111112334456677899999999999999977777777788888899
Q ss_pred HHHHHhHHhhhhhhccccccCC---CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Q 001055 477 ETLRVSSSTWLSYWTDQSSLKT---HGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFF 553 (1171)
Q Consensus 477 ~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f 553 (1171)
+.+...+.+|+++|++...... ....+|.++|++++++..++.+++++++...+.++++++|+.++++++++||.||
T Consensus 830 ~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FF 909 (1381)
T KOG0054|consen 830 QVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFF 909 (1381)
T ss_pred HHHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhc
Confidence 9999999999999998865433 4678899999999999999999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 554 HTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLD 633 (1171)
Q Consensus 554 ~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 633 (1171)
+++|+|+|+|||++|++.+|..++..+..++..++.++++++++.+..|+.+++++|+.+++|....+|.+++|+++|++
T Consensus 910 dtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLe 989 (1381)
T KOG0054|consen 910 DTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLE 989 (1381)
T ss_pred CCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001055 634 SITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGS 713 (1171)
Q Consensus 634 ~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 713 (1171)
+.+|||+++|+.|++.|+.|||||+.+++|...+....|.+.+..+.....++|+++++++++++++++.+.++++....
T Consensus 990 sitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~ 1069 (1381)
T KOG0054|consen 990 SITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSG 1069 (1381)
T ss_pred hcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888877654
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCCCccEEEEeeE
Q 001055 714 AENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVV 793 (1171)
Q Consensus 714 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs 793 (1171)
. ...+.+|+.++|++.++.+++++.+.....|+.+.++||+.+|.+.|+|.|...+...+++.||..|.|+|+|++
T Consensus 1070 ~----~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~ 1145 (1381)
T KOG0054|consen 1070 L----ISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLS 1145 (1381)
T ss_pred C----CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeE
Confidence 2 115789999999999999999999999999999999999999999998866555555588999999999999999
Q ss_pred EEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCccc
Q 001055 794 LRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVL 873 (1171)
Q Consensus 794 ~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 873 (1171)
.+|+++.++||+||||+|+|||+|||||++|||||||+++|.|+.+|.+|+|.|||+||++++++++|++++++||||.|
T Consensus 1146 ~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvL 1225 (1381)
T KOG0054|consen 1146 LRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVL 1225 (1381)
T ss_pred EEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCce
Confidence 99999888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcC
Q 001055 874 FSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 953 (1171)
Q Consensus 874 f~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~ 953 (1171)
|+||+|.||||+.+++|+++|+||++|++++++.++|.|+|+.+.|+|.++|-||||.+||||||+++++||+|||+|++
T Consensus 1226 FsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAs 1305 (1381)
T KOG0054|consen 1226 FSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATAS 1305 (1381)
T ss_pred ecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHHHH
Q 001055 954 VDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1021 (1171)
Q Consensus 954 LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~ 1021 (1171)
+|++|...|+++|++.+++||||.|+||++++.+||||+||++|+|+|+|+|.+|++++++.|+++..
T Consensus 1306 VD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~ 1373 (1381)
T KOG0054|consen 1306 VDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLK 1373 (1381)
T ss_pred CChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988875443
No 3
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=9.3e-150 Score=1496.63 Aligned_cols=1028 Identities=76% Similarity=1.184 Sum_probs=880.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 2 FPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSI 81 (1171)
Q Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~ 81 (1171)
+|++.++.+++++.+++.++.+|+|.+.++|+++||++||+|+||+.+.+++++.|++|++..++.....++..++....
T Consensus 454 ~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~ 533 (1495)
T PLN03232 454 IPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSI 533 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888999999999999999999999999999999999999999999999999999999988888877777666666
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCC
Q 001055 82 PVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLP 161 (1171)
Q Consensus 82 ~~~~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~ 161 (1171)
+.++.+++||++.+.+|.+|++.+|++++++..+..|+..+|..+..+.++++|++||++|++.+++...+++.......
T Consensus 534 ~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~~~~~~~~~ 613 (1495)
T PLN03232 534 PVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNPPLQPGAP 613 (1495)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccCCcCCCCC
Confidence 77777788999999999999999999999999999999999999999999999999999999876532211221112234
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcc
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNA 241 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~ 241 (1171)
.|+++|++|+|+.+.++++|+|+||++++|++++|+||+|||||||+++|+|+++|++|+....++.|+||+|+||+|++
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~g 693 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNA 693 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccc
Confidence 69999999999854457899999999999999999999999999999999999999999888889999999999999999
Q ss_pred cHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCH
Q 001055 242 TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 321 (1171)
Q Consensus 242 Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~ 321 (1171)
||+|||.||.++++++++++++.|++.++++.+|+||+|.+|++|.+|||||||||+||||||++|+|||||||||+||+
T Consensus 694 TIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~ 773 (1495)
T PLN03232 694 TVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDA 773 (1495)
T ss_pred cHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHHHhchhhhhhhccccC
Q 001055 322 HVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDG 401 (1171)
Q Consensus 322 ~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1171)
++++++++.+++...+++|+|+|||+++.+..+|+|++|++|+++++|+++++.++.+.|..+.......++..++....
T Consensus 774 ~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~ 853 (1495)
T PLN03232 774 HVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENAGKMDATQEVNTND 853 (1495)
T ss_pred HHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhcchhHHHHHHhcccccccccccccc
Confidence 99999999887765678999999999999999999999999999999999999988888887766543211110000000
Q ss_pred ccccCCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhccccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 001055 402 ETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRV 481 (1171)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~y~~~~~~~~~~~~~~~~~~l~~~~~~ 481 (1171)
+..... .+.. .. +..........+.+..+.....+++++.|.+++.+|++|+++.++.+.++++++++++.+++..
T Consensus 854 ~~~~~~--~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 929 (1495)
T PLN03232 854 ENILKL--GPTV-TI-DVSERNLGSTKQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRV 929 (1495)
T ss_pred cccccc--cccc-cc-cccccccccccccccchhhhhhHHHHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence 000000 0000 00 0000000000001111112334566678889999999999998877777777777777888888
Q ss_pred hHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHH
Q 001055 482 SSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRI 561 (1171)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~i 561 (1171)
...+|++.|.+..........+|..+|++++++..++.+++.++....+.+++.++|++++++++++|+.||+++++|++
T Consensus 930 ~~~~wl~~w~~~~~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~i 1009 (1495)
T PLN03232 930 SSSTWLSIWTDQSTPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRV 1009 (1495)
T ss_pred HHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHH
Confidence 88999999987543222335677888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Q 001055 562 INRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVY 641 (1171)
Q Consensus 562 i~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 641 (1171)
+||+++|++.+|..++..+..++..++.++..++++.++.++.+++++|++++++..+.++.+..++.++....+++++.
T Consensus 1010 lnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~ 1089 (1495)
T PLN03232 1010 INRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIY 1089 (1495)
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 99999999999999988888888887777777777766667777777777777777777788888889999999999999
Q ss_pred HHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHH
Q 001055 642 AQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFA 721 (1171)
Q Consensus 642 ~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 721 (1171)
+++.|+++|+.+||+|+.++++.+.+.+..+...+..........|+.+.+..++.+++++++.+.+...+..+....+.
T Consensus 1090 ~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 1169 (1495)
T PLN03232 1090 AQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLRNGNAENQAGFA 1169 (1495)
T ss_pred HHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccch
Confidence 99999999999999999999999999999998888888777788898888877776666665555554433322223345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCCCC
Q 001055 722 STMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELP 801 (1171)
Q Consensus 722 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~ 801 (1171)
..+|+++.+...+..++..+.+.+..++..+.+++|+.++.+.++|.+...+...+++.||..|.|+|+||+|+|+++.+
T Consensus 1170 ~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~ 1249 (1495)
T PLN03232 1170 STMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLP 1249 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCC
Confidence 66778888888888888899999999999999999999999888775432222234456788889999999999976556
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhh
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN 881 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~n 881 (1171)
++|+|+||+|+|||++|||||||||||||+++|+|+++|++|+|.+||+|+++++++++|++|+||||+|.+|++|||+|
T Consensus 1250 ~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~N 1329 (1495)
T PLN03232 1250 PVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFN 1329 (1495)
T ss_pred cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHH
Q 001055 882 LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 961 (1171)
Q Consensus 882 l~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~ 961 (1171)
|+++.+++|++++++++.++++++++++|.|+||.++++|.+||||||||+||||||+++|+|||||||||+||++|++.
T Consensus 1330 L~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~ 1409 (1495)
T PLN03232 1330 IDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSL 1409 (1495)
T ss_pred cCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHH
Confidence 99988889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHhhchhhHHHHHH
Q 001055 962 IQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRS 1033 (1171)
Q Consensus 962 i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1171)
|++.|++.++++|+|+||||++++.+||+|+||++|+|+|.|+|+||++++++.|+++++.++..+.+.++.
T Consensus 1410 Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~~~~~~~~~~ 1481 (1495)
T PLN03232 1410 IQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGPANAQYLSN 1481 (1495)
T ss_pred HHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhChhhhHHHHH
Confidence 999999998999999999999999999999999999999999999999988789999998877665554443
No 4
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.4e-140 Score=1407.89 Aligned_cols=1013 Identities=41% Similarity=0.703 Sum_probs=850.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 2 FPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSI 81 (1171)
Q Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~ 81 (1171)
+|++.++.+++++.++++++.+|+|.+.++|++++|++||+|+||+.+.+++++.|++|++..++..++..+..++....
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~ 550 (1522)
T TIGR00957 471 VPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCT 550 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58888999999999999999999999999999999999999999999999999999999999888888777766666666
Q ss_pred HHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCC--CCCCC
Q 001055 82 PVLVTVVSFGMFTLLG--GDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLP--NPPLT 157 (1171)
Q Consensus 82 ~~~~~~~~~g~~~~~~--~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~--~~~~~ 157 (1171)
+.++.+++|++|.+.. +.++++.+|++++++..+..|+..+|..+..+.++.+|++||++|++.++..... .....
T Consensus 551 ~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~ 630 (1522)
T TIGR00957 551 PFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIK 630 (1522)
T ss_pred HHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccC
Confidence 7777777888887763 5799999999999999999999999999999999999999999999876532111 01111
Q ss_pred -CCCCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCC
Q 001055 158 -SGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 236 (1171)
Q Consensus 158 -~~~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~ 236 (1171)
.....|+++|++|+|+. .++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+. ..+.||||||+|
T Consensus 631 ~~~~~~i~~~~~~~~~~~-~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~-~~g~i~yv~Q~~ 708 (1522)
T TIGR00957 631 PGEGNSITVHNATFTWAR-DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVH-MKGSVAYVPQQA 708 (1522)
T ss_pred CCCCCcEEEEEeEEEcCC-CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEE-ECCEEEEEcCCc
Confidence 11136999999999974 246799999999999999999999999999999999999999987654 567899999999
Q ss_pred CCCcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcC
Q 001055 237 WIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL 316 (1171)
Q Consensus 237 ~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpt 316 (1171)
|++++||+|||.||.+.+++++.++++.|++.++++.+|+|++|.+|++|.+|||||||||+||||||++|+++||||||
T Consensus 709 ~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~ 788 (1522)
T TIGR00957 709 WIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPL 788 (1522)
T ss_pred cccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999999999999888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhh--ccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHHHhchhhhh
Q 001055 317 SALDAHVGRQVFDRCIRG--ELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEY 394 (1171)
Q Consensus 317 s~LD~~~~~~l~~~l~~~--~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~ 394 (1171)
|+||+++.+++++.+.+. ..+++|+|+|||+++++..||+|++|++|+++++|+++++.+..+.+..+.......+..
T Consensus 789 saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~~~~~~~ 868 (1522)
T TIGR00957 789 SAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTYAPDEQQ 868 (1522)
T ss_pred cccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHHhhcccccc
Confidence 999999999999988742 346899999999999999999999999999999999999988766677665432211100
Q ss_pred h--hcc-c---cCccccC----C--C-----CCCCCCC---CCCCCCC---c---c-c-cccccccccchhhhhhhhccc
Q 001055 395 V--EEK-E---DGETVDN----K--T-----SKPAANG---VDNDLPK---E---A-S-DTRKTKEGKSVLIKQEERETG 446 (1171)
Q Consensus 395 ~--~~~-~---~~~~~~~----~--~-----~~~~~~~---~~~~~~~---~---~-~-~~~~~~~~~~~~~~~~~~~~g 446 (1171)
. ++. . ..+.... . . ....... ....... . . . .....+........++.+..|
T Consensus 869 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g 948 (1522)
T TIGR00957 869 GHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETWKLMEADKAQTG 948 (1522)
T ss_pred ccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccchhhhHHHHHHhcC
Confidence 0 000 0 0000000 0 0 0000000 0000000 0 0 0 000000000112234556678
Q ss_pred cchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhcccccc--CCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 001055 447 VVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSL--KTHGPLFYNTIYSLLSFGQVLVTLANSY 524 (1171)
Q Consensus 447 ~~~~~~l~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 524 (1171)
.+++.+|+.|+++.|.. ..+++++++++...+....++|+++|.+.... ......++..+|++++++..++.++..+
T Consensus 949 ~v~~~~y~~Y~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~~~~~~iy~~l~i~~~~~~~~~~~ 1027 (1522)
T TIGR00957 949 QVELSVYWDYMKAIGLF-ITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNTSLRLSVYGALGILQGFAVFGYSM 1027 (1522)
T ss_pred cccHHHHHHHHHHcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999988754 33444455556667778889999999875421 1122345666888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 525 WLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMS 604 (1171)
Q Consensus 525 ~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (1171)
+....+.+++.++|+.++++++++|+.||+++++|+++||+++|++.+|..++..+..++..++.+++.++++++..++.
T Consensus 1028 ~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~ 1107 (1522)
T TIGR00957 1028 AVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIA 1107 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888888888888888777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 605 LWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGA 684 (1171)
Q Consensus 605 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1171)
.++++|++++++.+..+|.+..++.++.....++++++++.|+++|+.+||+|+.++++.+.+.+..+...+..+.....
T Consensus 1108 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~ 1187 (1522)
T TIGR00957 1108 AVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVA 1187 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777788888889999999999999999999999999999999999999999999999998888887788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 001055 685 NRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIEL 764 (1171)
Q Consensus 685 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~ 764 (1171)
..|+.+.+++++.+++++++.+.+...+..+ .+.+|+++.+...+..++..+.+.+..++..+.+++|+.++.+.
T Consensus 1188 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~ 1262 (1522)
T TIGR00957 1188 NRWLAVRLECVGNCIVLFAALFAVISRHSLS-----AGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSET 1262 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8999998888776655555555544332222 45577788888888888899999999999999999999999988
Q ss_pred CCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCce
Q 001055 765 PSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 844 (1171)
Q Consensus 765 ~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~ 844 (1171)
++|.+...+...+++.||..|.|+|+||+|+|+++.+++|+|+||+|+|||++|||||||||||||+++|+|+++|++|+
T Consensus 1263 ~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~ 1342 (1522)
T TIGR00957 1263 EKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGE 1342 (1522)
T ss_pred CCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCe
Confidence 77654222233344568888999999999999865557999999999999999999999999999999999999999999
Q ss_pred EEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCC
Q 001055 845 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENF 924 (1171)
Q Consensus 845 I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~L 924 (1171)
|.+||+|+++++++++|++|++|||||.+|++|||+||+++++++|++++++++.++++++++++|.||||.++++|.+|
T Consensus 1343 I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~L 1422 (1522)
T TIGR00957 1343 IIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENL 1422 (1522)
T ss_pred EEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcC
Confidence 99999999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecC
Q 001055 925 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDT 1004 (1171)
Q Consensus 925 SgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~ 1004 (1171)
|||||||+||||||+++|+|||||||||+||++|++.|++.|++.++++|+|+||||++++.+||||+||++|+|+|.|+
T Consensus 1423 SgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~ 1502 (1522)
T TIGR00957 1423 SVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGA 1502 (1522)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999999989999999999999999999999999999999999
Q ss_pred hhHHhhcCCChHHHHHHhh
Q 001055 1005 PEELLSNEGSSFSKMVQST 1023 (1171)
Q Consensus 1005 ~~el~~~~~~~~~~~~~~~ 1023 (1171)
|+||+++ ++.|+++++..
T Consensus 1503 ~~eLl~~-~~~f~~l~~~~ 1520 (1522)
T TIGR00957 1503 PSNLLQQ-RGIFYSMAKDA 1520 (1522)
T ss_pred HHHHHhC-CCHHHHHHHHc
Confidence 9999987 57898887753
No 5
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.4e-137 Score=1376.36 Aligned_cols=1016 Identities=35% Similarity=0.592 Sum_probs=834.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 2 FPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSI 81 (1171)
Q Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~ 81 (1171)
+|++.++.+++.+.+++.++.+|+|++.++|++++||+||+|+||+.|.+++.+.|++|++..++..++..+..++...+
T Consensus 400 ~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~~~~~~~ 479 (1560)
T PTZ00243 400 LPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSFVNNAT 479 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-------C---
Q 001055 82 PVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKIL-------L--- 151 (1171)
Q Consensus 82 ~~~~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~-------~--- 151 (1171)
|.++.+++|++|.+.++.+|++.+|+++++++.+..|+.++|..+..+.++.+|++||++||..++... .
T Consensus 480 p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~ 559 (1560)
T PTZ00243 480 PTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDMEEYWR 559 (1560)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccchhhcc
Confidence 888888899999999999999999999999999999999999999999999999999999997654100 0
Q ss_pred ------C---------C-------C-------C---------------------CCCCCCcEEEEeeEEEcCC-------
Q 001055 152 ------P---------N-------P-------P---------------------LTSGLPAISIRNGYFSWDS------- 174 (1171)
Q Consensus 152 ------~---------~-------~-------~---------------------~~~~~~~i~~~~~s~~~~~------- 174 (1171)
+ + | . .....+.+.++|+++.|+.
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (1560)
T PTZ00243 560 EQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHIV 639 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccccccccccccccccccc
Confidence 0 0 0 0 0001124667777776531
Q ss_pred ------------------------------CCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce
Q 001055 175 ------------------------------KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV 224 (1171)
Q Consensus 175 ------------------------------~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~ 224 (1171)
..++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.
T Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~- 718 (1560)
T PTZ00243 640 EGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVW- 718 (1560)
T ss_pred cccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEE-
Confidence 0135689999999999999999999999999999999999999988765
Q ss_pred ecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhc
Q 001055 225 IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 304 (1171)
Q Consensus 225 ~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~ 304 (1171)
.++.||||||+||++++||+|||.|+.+.+.+++.++++.|++.++++.+|+|+.|.+|++|.+|||||||||+|||||+
T Consensus 719 ~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~ 798 (1560)
T PTZ00243 719 AERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVY 798 (1560)
T ss_pred ECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHh
Confidence 46789999999999999999999998777777888999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHH
Q 001055 305 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 384 (1171)
Q Consensus 305 ~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 384 (1171)
.+|++|||||||++||+++.+++++.++....+|+|+|+|||+++++..+|+|++|++|+++++|+++++.+.+ .+..+
T Consensus 799 ~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~~~-~~~~~ 877 (1560)
T PTZ00243 799 ANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRTS-LYATL 877 (1560)
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHhCh-HHHHH
Confidence 99999999999999999999999887665445689999999999999999999999999999999999998654 35544
Q ss_pred HHHhchhhhhhhccccCc--cccCCCCCCCCCCC--CCCCCCccccc-cccccccchhhhhhhhccccchHHHHHHHHHH
Q 001055 385 MENAGKMEEYVEEKEDGE--TVDNKTSKPAANGV--DNDLPKEASDT-RKTKEGKSVLIKQEERETGVVSFKVLSRYKDA 459 (1171)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~l~~y~~~ 459 (1171)
........+..+.....+ ........+..... ........... .........+...+.+..|.++|.+|++|+++
T Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~g~v~~~~y~~Y~~~ 957 (1560)
T PTZ00243 878 AAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDAAAGRLMTREEKASGSVPWSTYVAYLRF 957 (1560)
T ss_pred HHhhcccccccccccccccccccccccccccccccccccccccccccccccccccchhhhHHHHhcCcccHHHHHHHHHH
Confidence 432110000000000000 00000000000000 00000000000 00000011222344556788999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 460 LGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHD 539 (1171)
Q Consensus 460 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 539 (1171)
.|+....+++++++++.+.+.....+|++.|.+.... .....|+.+|.++.++..+..+++.+.......+.+.++|+
T Consensus 958 ~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~--~~~~~~l~~y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 1035 (1560)
T PTZ00243 958 CGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFK--LSAATYLYVYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHR 1035 (1560)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC--CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877766666666777788888889999999865321 22345666777776666666667777777777888899999
Q ss_pred HHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 540 AMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAY 619 (1171)
Q Consensus 540 ~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 619 (1171)
.++++++++|+.||++++.|+++|||++|++.+|..++..+..++..++.+++.++++++..++.+++++|++++++.+.
T Consensus 1036 ~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i~~~~~~~~i~ 1115 (1560)
T PTZ00243 1036 DLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALVPCGYLYYRLM 1115 (1560)
T ss_pred HHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998888888888777777777777777766666666666666666
Q ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 620 LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLM 699 (1171)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 699 (1171)
.+|.+..++.++.....++++++++.|+++|+.+||+|+.++.+.+.+.+..+...+..+.......|..+.+.++..++
T Consensus 1116 ~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~ 1195 (1560)
T PTZ00243 1116 QFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIV 1195 (1560)
T ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888889999999999999999999999999999999999999999999999888887777778889988887776554
Q ss_pred HHHHHHHHHHh----cCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CCCCCccc--
Q 001055 700 IWLTATFAVVQ----NGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIEL-PSEAPLVI-- 772 (1171)
Q Consensus 700 ~~~~~~~~~~~----~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~-~~e~~~~~-- 772 (1171)
..+++.+.+.. .+.. ..+.+++++.++..+..++..+.+.+..++..+.+++|+.++.+. ++|+....
T Consensus 1196 ~~~~~~~~~~~~~~~~~~~-----~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~ 1270 (1560)
T PTZ00243 1196 VTVIALIGVIGTMLRATSQ-----EIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELDE 1270 (1560)
T ss_pred HHHHHHHHHHHHHhccCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccc
Confidence 43332222211 1111 134567777777888888888899999999999999999999863 33211000
Q ss_pred ---------------------CCCCCC---CCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHH
Q 001055 773 ---------------------ESNRPP---PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKS 828 (1171)
Q Consensus 773 ---------------------~~~~~~---~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKS 828 (1171)
+...++ +.|+..|.|+|+||+|+|+++.+++|+||||+|+|||+|||||+||||||
T Consensus 1271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKS 1350 (1560)
T PTZ00243 1271 EVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKS 1350 (1560)
T ss_pred cccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHH
Confidence 001111 12345678999999999987656799999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHH
Q 001055 829 SMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRR 908 (1171)
Q Consensus 829 TLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~ 908 (1171)
||+++|+|+++|++|+|.+||+|+++++.+++|++|+||||+|.||++|||+||+++.+.+|++++++++.+++++++.+
T Consensus 1351 TLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~ 1430 (1560)
T PTZ00243 1351 TLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVAS 1430 (1560)
T ss_pred HHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999888899999999999999999999
Q ss_pred ccCCcchhhhcCCCCCChhHHHHHHHHHHhccC-CCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q 001055 909 NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR-SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID 987 (1171)
Q Consensus 909 lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~-p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~ 987 (1171)
+|.|+||.++++|.+|||||||||||||||+++ |+|||||||||+||+++++.|++.|++.++++|+|+||||++++.+
T Consensus 1431 lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~ 1510 (1560)
T PTZ00243 1431 ESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQ 1510 (1560)
T ss_pred CcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHh
Confidence 999999999999999999999999999999995 8999999999999999999999999998899999999999999999
Q ss_pred cCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHhhchh
Q 001055 988 CDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAA 1026 (1171)
Q Consensus 988 ~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~~~~ 1026 (1171)
||+|+||++|+|+|.|+|+||+++.++.|+++++..+..
T Consensus 1511 ~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~~~ 1549 (1560)
T PTZ00243 1511 YDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALGRS 1549 (1560)
T ss_pred CCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhChh
Confidence 999999999999999999999987778999998876543
No 6
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=8.6e-136 Score=1359.63 Aligned_cols=1014 Identities=30% Similarity=0.526 Sum_probs=835.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 2 FPVQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSI 81 (1171)
Q Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~ 81 (1171)
+|++.++++++.++++++++.+|+|++.++|++++|++||+|+||+.|.+++++.|++|++..++..++..+..++....
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~ 314 (1490)
T TIGR01271 235 ALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFS 314 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58889999999999999999999999999999999999999999999999999999999999999888877766666677
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCC
Q 001055 82 PVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLF-MLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGL 160 (1171)
Q Consensus 82 ~~~~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~-~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~ 160 (1171)
+.++.+++|++|.+.++ ++++.+|++++++..+..|+. .+|..+..+.++.+|++||++||..++....+.. ...
T Consensus 315 ~~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~~---~~~ 390 (1490)
T TIGR01271 315 GFFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEYN---LTT 390 (1490)
T ss_pred HHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccccc---CCC
Confidence 77788888998887755 789999999999999999985 7999999999999999999999987653221111 112
Q ss_pred CcEEEEeeEEEcCCC-------------------------------CCCCceeeeeEEecCCCEEEEEcCCCccHHHHHH
Q 001055 161 PAISIRNGYFSWDSK-------------------------------AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLIS 209 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~-------------------------------~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~ 209 (1171)
..++++|++|.|+.. ..+++|+|+||+|++|++++|+|||||||||||+
T Consensus 391 ~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~ 470 (1490)
T TIGR01271 391 TEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLM 470 (1490)
T ss_pred CceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHH
Confidence 359999999999631 0246899999999999999999999999999999
Q ss_pred HHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCcc
Q 001055 210 AMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 289 (1171)
Q Consensus 210 ~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~L 289 (1171)
+|+|+++|++|.+. +.+.|+||+|+||+|++||+|||.||.+++.+++.++++.|++.++++.+|.|+.|.+|++|.+|
T Consensus 471 ~l~G~~~~~~G~i~-~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~L 549 (1490)
T TIGR01271 471 MIMGELEPSEGKIK-HSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITL 549 (1490)
T ss_pred HHhCCCCCCCceEE-ECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCc
Confidence 99999999988665 56789999999999999999999999877778899999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEec
Q 001055 290 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEG 369 (1171)
Q Consensus 290 SGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g 369 (1171)
||||||||+||||||++|+++||||||++||+++++++++.++....+++|+|+|||+++.+..||+|++|++|++++.|
T Consensus 550 SgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g 629 (1490)
T TIGR01271 550 SGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYG 629 (1490)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEc
Confidence 99999999999999999999999999999999999999987655444689999999999999999999999999999999
Q ss_pred ChhHHhhcchHHHHHHHHhchhhh----------------------h-----hhcc------ccCcc-c-----------
Q 001055 370 TFEDLSNNGELFQKLMENAGKMEE----------------------Y-----VEEK------EDGET-V----------- 404 (1171)
Q Consensus 370 ~~~~l~~~~~~~~~~~~~~~~~~~----------------------~-----~~~~------~~~~~-~----------- 404 (1171)
+++++....+.|...........+ . .++. +.... .
T Consensus 630 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (1490)
T TIGR01271 630 TFSELQAKRPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKRKQSIILNPI 709 (1490)
T ss_pred CHHHHHhcChHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999998765545444321000000 0 0000 00000 0
Q ss_pred ---------------------cCCCCCCCCCC---------CCCCCC-----------------------Ccc--c----
Q 001055 405 ---------------------DNKTSKPAANG---------VDNDLP-----------------------KEA--S---- 425 (1171)
Q Consensus 405 ---------------------~~~~~~~~~~~---------~~~~~~-----------------------~~~--~---- 425 (1171)
......+.... .....+ ... .
T Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (1490)
T TIGR01271 710 ASARKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMTHSNRGENRR 789 (1490)
T ss_pred ccccccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhcccccccccccc
Confidence 00000000000 000000 000 0
Q ss_pred -----ccc--------------------c-ccc-----------c--cchhhhhhhhccccchHHHHHHHHHHhhhHHHH
Q 001055 426 -----DTR--------------------K-TKE-----------G--KSVLIKQEERETGVVSFKVLSRYKDALGGLWVV 466 (1171)
Q Consensus 426 -----~~~--------------------~-~~~-----------~--~~~~~~~~~~~~g~~~~~~l~~y~~~~~~~~~~ 466 (1171)
... . ... . .......+.+..|.+.|++|++|+++.|+++.+
T Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~~~~g~~~~~ 869 (1490)
T TIGR01271 790 EQLQTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYITTNRNLVFV 869 (1490)
T ss_pred cccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHHHhcCcHHHH
Confidence 000 0 000 0 001122344567889999999999988766666
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhhhcccc-------cc-C-----------CCCchHH-HHHHHHHHHHHHHHHHHHHHHH
Q 001055 467 LILLLCYFLTETLRVSSSTWLSYWTDQS-------SL-K-----------THGPLFY-NTIYSLLSFGQVLVTLANSYWL 526 (1171)
Q Consensus 467 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~-------~~-~-----------~~~~~~~-~~i~~~l~~~~~~~~~~~~~~~ 526 (1171)
+++++++++.+++.....+|+..|.... .. . .....+| .++|..+.++..++.+++.+++
T Consensus 870 ~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 949 (1490)
T TIGR01271 870 LIFCLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLALGFFRGLPL 949 (1490)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666667777888888999998886421 00 0 0011222 3445555555667778888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 527 IISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW 606 (1171)
Q Consensus 527 ~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (1171)
...+.+++.++|+.++++++++|+.||+++++|+++|||++|++.+|..++..+..++..++.+++.++++++..++..+
T Consensus 950 ~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l 1029 (1490)
T TIGR01271 950 VHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFI 1029 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988888888888888888877777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 607 AIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANR 686 (1171)
Q Consensus 607 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1171)
+++|++++++.+..+|.+..++.++.....++++++++.|+++|+.+||+|+.++++.+.+.+..+...+..+......+
T Consensus 1030 ~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1109 (1490)
T TIGR01271 1030 AAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLR 1109 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777888888999999999999999999999999999999999999999999998887777777777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 001055 687 WLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPS 766 (1171)
Q Consensus 687 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~ 766 (1171)
|+.+.+.+++.+++..++.+.+... .. ....+|++++++..+...+..+.+.+..++..+.+++|+.++.+.++
T Consensus 1110 wl~~~~~~i~~~~~~~~~~l~~~~~-~~-----~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~ 1183 (1490)
T TIGR01271 1110 WFQMRIDIIFVFFFIAVTFIAIGTN-QD-----GEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQ 1183 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-cC-----CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9988887766554433333322211 11 12346777778888888888888888889999999999999998877
Q ss_pred CCCcccC--------------CCCCCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHH
Q 001055 767 EAPLVIE--------------SNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLN 832 (1171)
Q Consensus 767 e~~~~~~--------------~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~ 832 (1171)
|.+...+ ...+++.||..|.|+|+||+|+|+++.+++|+|+||+|+|||+|||||+||||||||++
T Consensus 1184 e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~ 1263 (1490)
T TIGR01271 1184 EEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLS 1263 (1490)
T ss_pred ccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 6432111 11233468888999999999999876568999999999999999999999999999999
Q ss_pred HHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCC
Q 001055 833 TLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLG 912 (1171)
Q Consensus 833 ~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~g 912 (1171)
+|+|+++ ++|+|.+||+|+++++++++|++|+||||+|.+|++|||+||+++...+|++++++++.+++++++.++|.|
T Consensus 1264 lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~G 1342 (1490)
T TIGR01271 1264 ALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDK 1342 (1490)
T ss_pred HHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccc
Confidence 9999997 799999999999999999999999999999999999999999998888999999999999999999999999
Q ss_pred cchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEE
Q 001055 913 LDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRIL 992 (1171)
Q Consensus 913 l~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~ 992 (1171)
+|+.+++.|.+|||||||||||||||+++|+|||||||||+||++|++.|++.|++.+++||||+||||++++.+||+|+
T Consensus 1343 Ldt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIl 1422 (1490)
T TIGR01271 1343 LDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFL 1422 (1490)
T ss_pred cccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999989999999999999999999999
Q ss_pred EEeCcEEEEecChhHHhhcCCChHHHHHHhhchhhH
Q 001055 993 LLDSGRVLEYDTPEELLSNEGSSFSKMVQSTGAANA 1028 (1171)
Q Consensus 993 vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~~~~~~ 1028 (1171)
||++|+|+|.|+|++|++. ++.|+++++..+..+.
T Consensus 1423 vL~~G~ivE~g~p~~Ll~~-~~~f~~l~~~~~~~~~ 1457 (1490)
T TIGR01271 1423 VIEGSSVKQYDSIQKLLNE-TSLFKQAMSAADRLKL 1457 (1490)
T ss_pred EEECCEEEEeCCHHHHHcC-CcHHHHHHHHhChhcc
Confidence 9999999999999999974 6889999887665443
No 7
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.4e-132 Score=1226.20 Aligned_cols=996 Identities=24% Similarity=0.326 Sum_probs=750.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Q 001055 8 IISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSI--PVLV 85 (1171)
Q Consensus 8 ~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~--~~~~ 85 (1171)
+.+.+.+...+.+....+.-+.+.|+++++|||-+|+.|+....++.+.-+...+...+..+..++...+..++ ....
T Consensus 191 ~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a 270 (1228)
T KOG0055|consen 191 LARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLFKGLGLGFTFFLLFASYA 270 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34456778888888889999999999999999999999999999988877777777666666655543333222 2334
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCC--C-CCCCCCCc
Q 001055 86 TVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPN--P-PLTSGLPA 162 (1171)
Q Consensus 86 ~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~--~-~~~~~~~~ 162 (1171)
..+|||..++..+..+++.+++++..+......|....+.+..+..|++|+.+|.+.++..+.....+ . ........
T Consensus 271 ~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~~~~~~~g~ 350 (1228)
T KOG0055|consen 271 LAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGRVLSSIKGE 350 (1228)
T ss_pred HHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCcccccCCcccccccc
Confidence 56889988899999999999999987777788888999999999999999999999998765433221 1 11222346
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccc------------eecCcEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA------------VIRGTVA 230 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~------------~~~~~i~ 230 (1171)
|+++||+|+||.+++.++|+|+||.|++|+.++|||||||||||++++|.|+|+|++|.+. ++|.+||
T Consensus 351 ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~ig 430 (1228)
T KOG0055|consen 351 IEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIG 430 (1228)
T ss_pred eEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcC
Confidence 9999999999988888999999999999999999999999999999999999999998753 3567899
Q ss_pred EEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCE
Q 001055 231 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 309 (1171)
Q Consensus 231 ~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~v 309 (1171)
.|.|+|.||++||+|||.||++ .+.+++.++++.++..+++..+|+|++|.+|++|.+|||||||||||||||+++|+|
T Consensus 431 lV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~I 510 (1228)
T KOG0055|consen 431 LVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKI 510 (1228)
T ss_pred eeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCE
Confidence 9999999999999999999985 467889999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHHHhc
Q 001055 310 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAG 389 (1171)
Q Consensus 310 llLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 389 (1171)
||||||||+||+++++.+.+.| +...+|+|.|+|+||++.+.++|+|++|++|+|++.|+++||.+.++.|..+++.+.
T Consensus 511 LLLDEaTSaLD~~se~~Vq~AL-d~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~G~Y~~lv~~Q~ 589 (1228)
T KOG0055|consen 511 LLLDEATSALDAESERVVQEAL-DKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALGGIYSSLVRLQE 589 (1228)
T ss_pred EEecCcccccCHHHHHHHHHHH-HHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhccchHHHHHHHHh
Confidence 9999999999999999887754 556689999999999999999999999999999999999999999899999987553
Q ss_pred hhhhhhh-ccccCcc-ccCCCC--CCCCCCCCCC-CCCccccccccccccchhhhhhhhccccchHHHHHHHHHHhhhHH
Q 001055 390 KMEEYVE-EKEDGET-VDNKTS--KPAANGVDND-LPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLW 464 (1171)
Q Consensus 390 ~~~~~~~-~~~~~~~-~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~y~~~~~~~~ 464 (1171)
....... +..+... ....+. +......... ............+....... .+....++..+..+.+ ..++
T Consensus 590 ~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~---~~~~~~s~~~i~k~~~--pe~~ 664 (1228)
T KOG0055|consen 590 LEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNLLSVKPEGEDPEEPVS---EEDEKVSFWRIFKLNK--PEWP 664 (1228)
T ss_pred hhhhhhccccccchhhhhhhccccccccccccCCccccccccccccccccccccc---cccccccHHHHHHhcc--chhH
Confidence 2221110 0000000 000000 0000000000 00000000000000000000 0001222222222222 2344
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhhh----c-cccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 465 VVLILLLCYFLTETLRVSSSTWLSYW----T-DQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHD 539 (1171)
Q Consensus 465 ~~~~~~~~~~l~~~~~~~~~~~l~~~----~-~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 539 (1171)
++++..++.++...........++.. . .+..........|..+|.++++...+..+++.|++.+.+.+...++|.
T Consensus 665 ~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~ 744 (1228)
T KOG0055|consen 665 YLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRS 744 (1228)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444433333222222221 1 111111112334888899999999999999999999999999999999
Q ss_pred HHHHHHHcCCcccccc--CChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 001055 540 AMLHSILRAPMVFFHT--NPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW---AIMPLLLL 614 (1171)
Q Consensus 540 ~~~~~ll~~p~~~f~~--~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ll~~ 614 (1171)
.+|++++++++.|||. |. |.+.+|+.+|...+...+...+..++..+..++..+++.++.+|-..+ ++.|++++
T Consensus 745 ~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~ 823 (1228)
T KOG0055|consen 745 MMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLIL 823 (1228)
T ss_pred HHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999984 56 999999999999999888888888888888877777777666654333 44555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---
Q 001055 615 FYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANR-WLAI--- 690 (1171)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--- 690 (1171)
....+..+.... ................|++.+++||++|..++++.+.+.+.++...+.......... .+++
T Consensus 824 ~~~~~~~~~~~~---~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs 900 (1228)
T KOG0055|consen 824 SGYLQKKFLKGF---SKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQS 900 (1228)
T ss_pred HHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433333322211 111122222344577899999999999999999999999988877766555433221 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCc
Q 001055 691 RLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPL 770 (1171)
Q Consensus 691 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~ 770 (1171)
.+.+..++..|+++. ++..+..+....+.....+.++ ...+.........+..+..|+.++.++++.++..+.
T Consensus 901 ~~~~~~A~~f~~G~~--Li~~g~~~~~~~~~vf~~l~~t-----a~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~ 973 (1228)
T KOG0055|consen 901 LLFFVYALSFWYGAR--LISNGEMTFEDVFRVFMALSFT-----AMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDP 973 (1228)
T ss_pred HHHHHHHHHHHHhHH--HHhcCCcCHHHHHHHHHHHHHH-----HHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 111222222333222 2233333333333222221111 112222333344556677888999999877653222
Q ss_pred ccCCCCCCCCCCCCccEEEEeeEEEeCCC-CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 001055 771 VIESNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 849 (1171)
Q Consensus 771 ~~~~~~~~~~~~~~g~i~~~~vs~~y~~~-~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g 849 (1171)
..+.. ....+.+|.|+++||+|+||.+ ..++|+|+||+|++|+.+||||||||||||++.+|.|+|+|++|.|.|||
T Consensus 974 ~~~~~--~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg 1051 (1228)
T KOG0055|consen 974 DSTSG--GKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDG 1051 (1228)
T ss_pred CCCCC--CccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECC
Confidence 11111 1122457899999999999743 23699999999999999999999999999999999999999999999999
Q ss_pred EecCCCChHHHhhheEEEcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhH
Q 001055 850 FDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 928 (1171)
Q Consensus 850 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGq 928 (1171)
.|+++++++++|++||+|.|+|.||++||||||.++. +.+.+++.+|++.+++++||..||+||||.++++|.+|||||
T Consensus 1052 ~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQ 1131 (1228)
T KOG0055|consen 1052 VDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQ 1131 (1228)
T ss_pred cccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchH
Confidence 9999999999999999999999999999999999873 458999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHH
Q 001055 929 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 1008 (1171)
Q Consensus 929 kqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el 1008 (1171)
|||+|||||++|||+||||||+||+||.++++.++++|++...++|+|+|+||++++++||.|.|+++|+|+|+|+|++|
T Consensus 1132 KQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L 1211 (1228)
T KOG0055|consen 1132 KQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDEL 1211 (1228)
T ss_pred HHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCChHHHHHHhh
Q 001055 1009 LSNEGSSFSKMVQST 1023 (1171)
Q Consensus 1009 ~~~~~~~~~~~~~~~ 1023 (1171)
++ ..+.|.++++.+
T Consensus 1212 ~~-~~G~Y~~Lv~~q 1225 (1228)
T KOG0055|consen 1212 LA-KRGIYFRLVQLQ 1225 (1228)
T ss_pred Hh-CCCchHHHhhhc
Confidence 98 567899888754
No 8
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=6.3e-120 Score=1197.28 Aligned_cols=1008 Identities=19% Similarity=0.277 Sum_probs=717.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 001055 7 FIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIP--VL 84 (1171)
Q Consensus 7 ~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~--~~ 84 (1171)
++.+++++..++.++..++..+.+.|.++||++||.|+.|+.+..++.+..+...+...+.....++...+...+. ..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~ 295 (1466)
T PTZ00265 216 ICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASY 295 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777777788999999999999999999999999999987766666655555555544333333222 22
Q ss_pred HHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCC-C
Q 001055 85 VTVVSFGMFTLLGG--------DLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP-P 155 (1171)
Q Consensus 85 ~~~~~~g~~~~~~~--------~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~-~ 155 (1171)
+.++++|.+++..| .++++.+++++........++..+.+.+..+..+..|++||.++++.+++...... .
T Consensus 296 ~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~~~~ 375 (1466)
T PTZ00265 296 AFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENNDDGK 375 (1466)
T ss_pred HHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCc
Confidence 45567888888765 57888888776665555556666667789999999999999999987553221111 1
Q ss_pred CCCCCCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-----------
Q 001055 156 LTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------- 224 (1171)
Q Consensus 156 ~~~~~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------- 224 (1171)
..+....|+++|++|+|+...++++|+|+||+|++||++||+||||||||||+++|+|+++|++|.+..
T Consensus 376 ~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~ 455 (1466)
T PTZ00265 376 KLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINL 455 (1466)
T ss_pred cCCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCH
Confidence 111123699999999998544457999999999999999999999999999999999999999886543
Q ss_pred --ecCcEEEEecCCCCCcccHHHHHhcCCC--------------------------------------------------
Q 001055 225 --IRGTVAYVPQVSWIFNATVRDNILFGSA-------------------------------------------------- 252 (1171)
Q Consensus 225 --~~~~i~~v~Q~~~l~~~Tv~eni~~g~~-------------------------------------------------- 252 (1171)
+++.||||+|+|.+|++||+|||.+|..
T Consensus 456 ~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 535 (1466)
T PTZ00265 456 KWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELI 535 (1466)
T ss_pred HHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhh
Confidence 2346999999999999999999998731
Q ss_pred --------CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHH
Q 001055 253 --------FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 324 (1171)
Q Consensus 253 --------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~ 324 (1171)
.+++++.++++.+++.+++..+|+|++|.+|++|.+|||||||||+|||||+++|+|||||||||+||+.++
T Consensus 536 ~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se 615 (1466)
T PTZ00265 536 EMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSE 615 (1466)
T ss_pred hcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHH
Confidence 134567788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcc-CCCEEEEEcCCcchhhhcCEEEEEeCC----------------------------------------
Q 001055 325 RQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEG---------------------------------------- 363 (1171)
Q Consensus 325 ~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~~d~i~~l~~G---------------------------------------- 363 (1171)
+.+.+.+.+... +|+|+|+|||+++.+..||+|++|++|
T Consensus 616 ~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1466)
T PTZ00265 616 YLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNN 695 (1466)
T ss_pred HHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCcccccccccccccccccccccccccccccccccccccccc
Confidence 999988766543 589999999999999999999999986
Q ss_pred -------EEEEecChhHHhh-cchHHHHHHHHhchhhhhhh-ccccCcc---ccCCCCCC-CC--CCCC-----CCCC-C
Q 001055 364 -------MVKEEGTFEDLSN-NGELFQKLMENAGKMEEYVE-EKEDGET---VDNKTSKP-AA--NGVD-----NDLP-K 422 (1171)
Q Consensus 364 -------~i~~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~-~~--~~~~-----~~~~-~ 422 (1171)
+|+++|+++++++ ..+.|..++..+........ +..+... ........ .. .... .... .
T Consensus 696 ~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 775 (1466)
T PTZ00265 696 KINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYKDSERGYDPDEMNGNSKHENESAS 775 (1466)
T ss_pred ccccCCceeEeeCCHHHHHhccCCcHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5999999999997 57888888865432211100 0000000 00000000 00 0000 0000 0
Q ss_pred --ccccc--c--ccccc--cchhhhhh--hhccccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhcc
Q 001055 423 --EASDT--R--KTKEG--KSVLIKQE--ERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTD 492 (1171)
Q Consensus 423 --~~~~~--~--~~~~~--~~~~~~~~--~~~~g~~~~~~l~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~ 492 (1171)
..... . ..... +.....+. ........+..+.++.... .+.+++.+++.++...+....+..++.+++
T Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 853 (1466)
T PTZ00265 776 NKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSY--KKDVTIIALSILVAGGLYPVFALLYAKYVS 853 (1466)
T ss_pred cccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0 00000 00000000 0000000111111111111 111333333444444555555555555544
Q ss_pred ccccC---CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccc--CChhHHHHHHHh
Q 001055 493 QSSLK---THGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHT--NPLGRIINRFAK 567 (1171)
Q Consensus 493 ~~~~~---~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~--~~~G~ii~r~s~ 567 (1171)
..... ......+..++++++++..++.+++.++....+.+...++|..+|++++++|+.||++ +++|++++|+++
T Consensus 854 ~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~ 933 (1466)
T PTZ00265 854 TLFDFANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINR 933 (1466)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHH
Confidence 22111 1112345556666677778888999999999999999999999999999999999985 889999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHH-------------
Q 001055 568 DLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYY-QS-TAREVKRL------------- 632 (1171)
Q Consensus 568 Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~-~~-~~~~~~~~------------- 632 (1171)
|+..+...+...+..++..++.++..+++++++.+...++++|+++++...+... +. ..++.++.
T Consensus 934 Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1013 (1466)
T PTZ00265 934 DVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNS 1013 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhh
Confidence 9999998777666666666666666655555555554444443332221111111 10 01111111
Q ss_pred HHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 001055 633 DSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEI---VGGLMIWLTATFAVV 709 (1171)
Q Consensus 633 ~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~ 709 (1171)
..+..+.....+.|+++|+++||+|+.++++.+.+.+..+...+..........+....... ++.+++++++.+.+.
T Consensus 1014 ~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~ 1093 (1466)
T PTZ00265 1014 DDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIR 1093 (1466)
T ss_pred hHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223455778899999999999999999998888877766555444332222222222211 222222222233333
Q ss_pred hcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCC-CCCCCCccEE
Q 001055 710 QNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPP-PGWPSSGSIK 788 (1171)
Q Consensus 710 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~-~~~~~~g~i~ 788 (1171)
. +..+....+... .+.......+..+......++.+..+.+|+.++++.+++.+......... ......+.|+
T Consensus 1094 ~-g~it~g~l~~~~-----~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~ 1167 (1466)
T PTZ00265 1094 R-GTILVDDFMKSL-----FTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIE 1167 (1466)
T ss_pred c-CCCCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEE
Confidence 2 222211111111 11111122334455666677888999999999987654321111111100 0112346799
Q ss_pred EEeeEEEeCCC-CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC---------------------------
Q 001055 789 FEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--------------------------- 840 (1171)
Q Consensus 789 ~~~vs~~y~~~-~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p--------------------------- 840 (1171)
|+||+|+|+++ ..++|+|+||+|+||+++|||||||||||||+++|+|+|+|
T Consensus 1168 f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1247 (1466)
T PTZ00265 1168 IMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEE 1247 (1466)
T ss_pred EEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccc
Confidence 99999999743 24799999999999999999999999999999999999999
Q ss_pred ---------------------------CCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCC-CCCHHH
Q 001055 841 ---------------------------ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDAD 892 (1171)
Q Consensus 841 ---------------------------~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~ 892 (1171)
++|+|++||+|+++++..++|++||||||+|.||++||+|||.++. +.++++
T Consensus 1248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~ee 1327 (1466)
T PTZ00265 1248 QNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATRED 1327 (1466)
T ss_pred cccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHH
Confidence 6999999999999999999999999999999999999999999874 468999
Q ss_pred HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--
Q 001055 893 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-- 970 (1171)
Q Consensus 893 i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-- 970 (1171)
+++|++.+++++||+++|.||||.++++|.+|||||||||||||||+++|+|||||||||+||+++++.|+++|.+..
T Consensus 1328 I~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~ 1407 (1466)
T PTZ00265 1328 VKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDK 1407 (1466)
T ss_pred HHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred CCcEEEEEecChhhhhhcCEEEEEeC----cEEE-EecChhHHhhcCCChHHHHHHh
Q 001055 971 KSCTMLIIAHRLNTIIDCDRILLLDS----GRVL-EYDTPEELLSNEGSSFSKMVQS 1022 (1171)
Q Consensus 971 ~~~tvi~vtH~~~~~~~~d~i~vl~~----G~i~-~~g~~~el~~~~~~~~~~~~~~ 1022 (1171)
+++|+|+||||+++++.||+|+||++ |+++ |.|+|+||+++.++.|+++++.
T Consensus 1408 ~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~ 1464 (1466)
T PTZ00265 1408 ADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKL 1464 (1466)
T ss_pred CCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhh
Confidence 68999999999999999999999999 9955 8999999998556788888754
No 9
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-79 Score=720.85 Aligned_cols=548 Identities=26% Similarity=0.362 Sum_probs=444.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhhhhcccccc-CCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 463 LWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSL-KTHGP--LFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHD 539 (1171)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 539 (1171)
++.+.+.++++++.....+..|.+++..+|.... ..... .-...++.++.++..+...++.+++..++.+...++|.
T Consensus 146 ~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~ 225 (716)
T KOG0058|consen 146 WKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGALANAIRGGLLQYAGERVVARLRT 225 (716)
T ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666677777777666554333 11111 11234556677788899999999999999999999999
Q ss_pred HHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 540 AMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAY 619 (1171)
Q Consensus 540 ~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 619 (1171)
.+|++++++.+.|||.+.+|++++|++.|...+.+.++..++..+...++.++.+..++++++-...+.+..+++...+.
T Consensus 226 ~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~ 305 (716)
T KOG0058|consen 226 DLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLTLVTLIVVPIVALVA 305 (716)
T ss_pred HHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988888887765554444444445555
Q ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Q 001055 620 LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIV---G 696 (1171)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 696 (1171)
.+|.+..+++.+..+++-+...+...|.+++++|+|+|.+|....++|.+..+...+...........+....++. .
T Consensus 306 ~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~ 385 (716)
T KOG0058|consen 306 KIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNLA 385 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHH
Confidence 6666666666666666667777888999999999999999998888888777766655544333322222222222 2
Q ss_pred HHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccC
Q 001055 697 GLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALN---ITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIE 773 (1171)
Q Consensus 697 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~---~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~ 773 (1171)
.+.+++.+...+..+ .++.|.+++|.++ +...+..+...++.+.+...|.+|+.++++.++.-+..
T Consensus 386 ~~siL~~Gg~Lv~~g---------~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~-- 454 (716)
T KOG0058|consen 386 VLSILFYGGHLVLTG---------SLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT-- 454 (716)
T ss_pred HHHHHHhccchhhcC---------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC--
Confidence 222222222222221 2344555555554 44555566667777778889999999999876654322
Q ss_pred CCCCCCCCCCCccEEEEeeEEEeCCC-CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEec
Q 001055 774 SNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI 852 (1171)
Q Consensus 774 ~~~~~~~~~~~g~i~~~~vs~~y~~~-~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i 852 (1171)
....+. ...|.|+|+||+|+|+.+ ..++|+|+||+|+|||+||||||||+||||++++|.++|+|++|+|.+||+||
T Consensus 455 -G~~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i 532 (716)
T KOG0058|consen 455 -GTLAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPI 532 (716)
T ss_pred -Cccccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeeh
Confidence 111122 457899999999999754 24699999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHhhheEEEcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001055 853 AKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 931 (1171)
Q Consensus 853 ~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqr 931 (1171)
+++++..+|++||+|.|||.||++||+|||.++. ..+++++..|++.+++++||..+|+||+|.++|+|.+||||||||
T Consensus 533 ~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQR 612 (716)
T KOG0058|consen 533 SDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQR 612 (716)
T ss_pred hhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHH
Confidence 9999999999999999999999999999998765 458999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhc
Q 001055 932 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 932 l~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
+||||||++||.||||||+||+||.++|..++++|.+..+++|||+|+||++++++||+|+|+++|+|+|.|+|+||+++
T Consensus 613 IAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~ 692 (716)
T KOG0058|consen 613 IAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSK 692 (716)
T ss_pred HHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHhh
Q 001055 1012 EGSSFSKMVQST 1023 (1171)
Q Consensus 1012 ~~~~~~~~~~~~ 1023 (1171)
.++.|+++++.+
T Consensus 693 ~~gly~~Lv~~q 704 (716)
T KOG0058|consen 693 PNGLYAKLVQRQ 704 (716)
T ss_pred cccHHHHHHHHh
Confidence 889999988764
No 10
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=3.3e-75 Score=713.47 Aligned_cols=543 Identities=29% Similarity=0.438 Sum_probs=443.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 465 VVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFY--NTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAML 542 (1171)
Q Consensus 465 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 542 (1171)
.+.-+++..++.+++....|.+....+|...+........ ...+.++.++..++.+++.++....+.+....+-.+++
T Consensus 155 ~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~ 234 (709)
T COG2274 155 LLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFF 234 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3444555666677788888888888888876554433332 33455566778899999999999999999999999999
Q ss_pred HHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 543 HSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYY 622 (1171)
Q Consensus 543 ~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 622 (1171)
+|++++|+.||+++++|++++|+ +|++.|.+++...+...+..+...+..++++++.++...|+.+..++++......+
T Consensus 235 ~hll~Lpl~~f~~r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~ 313 (709)
T COG2274 235 RHLLRLPLSYFEKRSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIF 313 (709)
T ss_pred HHHHcCcHHHccCCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 46777777766666555555555555666666666666555555555555555555
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 001055 623 QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRY----TLVNMGANRWLAIRLEIVGGL 698 (1171)
Q Consensus 623 ~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l 698 (1171)
.+..++..+...+..+...+.+.|++.|+.++|+.+.|.++...+.+......+. .......+.+..+...+...+
T Consensus 314 ~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~ 393 (709)
T COG2274 314 QPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVL 393 (709)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555556677899999999999999999998877777666655544 444444555555555555556
Q ss_pred HHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCC
Q 001055 699 MIWLTATFAVVQNGSAENQEAFASTMGLLLSYAL---NITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESN 775 (1171)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~---~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~ 775 (1171)
++|+++...+-. ..++|.+++|.. ++..++..+...+..++....+.+|+.++++.|+|.+.. .
T Consensus 394 iL~~G~~lVl~~----------~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~---~ 460 (709)
T COG2274 394 ILWFGAILVLEG----------ELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGD---K 460 (709)
T ss_pred HHHHHHHHHhcC----------CcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc---c
Confidence 666665554422 245566666554 455666666777788889999999999999998875321 1
Q ss_pred CCCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCC
Q 001055 776 RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF 855 (1171)
Q Consensus 776 ~~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~ 855 (1171)
.....++..|.|+++||+|+|+++.+++|+|+|++|+|||+|||||+||||||||+|+|+|+|+|++|+|++||.|++++
T Consensus 461 ~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i 540 (709)
T COG2274 461 TLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDI 540 (709)
T ss_pred ccccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhc
Confidence 12334456789999999999998777899999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHhhheEEEcCCcccccccHHhhccCCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001055 856 GLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 934 (1171)
Q Consensus 856 ~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~l 934 (1171)
++..+|++|||||||+.+|++||+||+.+.++ .+++++.+|++.++++++|.++|.||+|.++|+|.+|||||||||+|
T Consensus 541 ~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlal 620 (709)
T COG2274 541 DLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLAL 620 (709)
T ss_pred CHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999998765 47799999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCC
Q 001055 935 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGS 1014 (1171)
Q Consensus 935 Arall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~ 1014 (1171)
||||+++|+|||||||||+||+++++.+.+.|.+...++|+|+||||+++++.||||+||++|+|+++|+|+|+++. ++
T Consensus 621 ARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~-~g 699 (709)
T COG2274 621 ARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ-GG 699 (709)
T ss_pred HHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh-cC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988 67
Q ss_pred hHHHHHHh
Q 001055 1015 SFSKMVQS 1022 (1171)
Q Consensus 1015 ~~~~~~~~ 1022 (1171)
.|.++++.
T Consensus 700 ~y~~l~~~ 707 (709)
T COG2274 700 LYARLYQQ 707 (709)
T ss_pred hHHHHHhc
Confidence 78877653
No 11
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3.6e-72 Score=651.02 Aligned_cols=465 Identities=25% Similarity=0.396 Sum_probs=354.0
Q ss_pred cEEEEeeEEEcCCCCCC-CceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCC----CCccce------------
Q 001055 162 AISIRNGYFSWDSKAER-PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV----SDASAV------------ 224 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~-~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~----~g~~~~------------ 224 (1171)
.++++|++..|...++. ++++||||++.+||++||||+|||||||+.++|.|++++. +|.+..
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 68999999999754322 5999999999999999999999999999999999999886 444311
Q ss_pred ----ecCcEEEEecCCCC-Cc--ccHHHHHhc----CCCCC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCcc
Q 001055 225 ----IRGTVAYVPQVSWI-FN--ATVRDNILF----GSAFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 289 (1171)
Q Consensus 225 ----~~~~i~~v~Q~~~l-~~--~Tv~eni~~----g~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~L 289 (1171)
..+.|+|+||+|.- +| .||.+.|.- ..... .++..+.++..++.+.... +...++|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 22359999999853 43 477766642 22111 1233445666666554433 2234689
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhc-cCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEE
Q 001055 290 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKE 367 (1171)
Q Consensus 290 SGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~-~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~ 367 (1171)
||||||||.||+||+.+|++||+||||++||+.++..|.+.+.... ..|.++|+||||+..+.+ ||||++|++|++++
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999887765 459999999999999876 79999999999999
Q ss_pred ecChhHHhhcch-HHHH-HHHHhchhhhhhhccccCccccCCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhcc
Q 001055 368 EGTFEDLSNNGE-LFQK-LMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERET 445 (1171)
Q Consensus 368 ~g~~~~l~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (1171)
.|+.++++++.. .|.. +... .|..
T Consensus 236 ~G~~~~i~~~p~hpYT~~Ll~a--------------------------------~p~~---------------------- 261 (539)
T COG1123 236 TGPTEEILSNPQHPYTRGLLAA--------------------------------VPRL---------------------- 261 (539)
T ss_pred ecCHHHHHhccCCcccHHHHhh--------------------------------CCCc----------------------
Confidence 999999875421 0000 0000 0000
Q ss_pred ccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 446 GVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYW 525 (1171)
Q Consensus 446 g~~~~~~l~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 525 (1171)
T Consensus 262 -------------------------------------------------------------------------------- 261 (539)
T COG1123 262 -------------------------------------------------------------------------------- 261 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 526 LIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSL 605 (1171)
Q Consensus 526 ~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (1171)
+
T Consensus 262 -----------------------------------------------~-------------------------------- 262 (539)
T COG1123 262 -----------------------------------------------G-------------------------------- 262 (539)
T ss_pred -----------------------------------------------c--------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 606 WAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGAN 685 (1171)
Q Consensus 606 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1171)
..
T Consensus 263 ----------------------------~~-------------------------------------------------- 264 (539)
T COG1123 263 ----------------------------DE-------------------------------------------------- 264 (539)
T ss_pred ----------------------------cc--------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 001055 686 RWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELP 765 (1171)
Q Consensus 686 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~ 765 (1171)
+....+
T Consensus 265 --------------------------------------------------------------------------~~~~~~ 270 (539)
T COG1123 265 --------------------------------------------------------------------------KIIRLP 270 (539)
T ss_pred --------------------------------------------------------------------------cccccc
Confidence 000000
Q ss_pred CCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCC---------CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhc
Q 001055 766 SEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE---------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 766 ~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~---------~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g 836 (1171)
...+ .+....++++|+++.|... ...+++||||++++||++||||+||||||||.++|+|
T Consensus 271 ~~~~-----------~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~g 339 (539)
T COG1123 271 RRGP-----------LRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAG 339 (539)
T ss_pred cccc-----------cccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhC
Confidence 0000 0011248999999999731 2368999999999999999999999999999999999
Q ss_pred CCCCCCceEEECCEe--cCCCChHHHhhheEEEcCCcc--ccc-ccHHhhccC----CCCCC----HHHHHHHHHHhcHH
Q 001055 837 IVELERGRILIDGFD--IAKFGLMDLRKILGIIPQSPV--LFS-GTVRFNLDP----FSEHS----DADLWEALERAHLK 903 (1171)
Q Consensus 837 ~~~p~~G~I~i~g~~--i~~~~~~~~r~~i~~v~Q~~~--lf~-~tv~~nl~~----~~~~~----~~~i~~~l~~~~~~ 903 (1171)
+.+|++|+|.++|.+ .+.-.....|+++-+|+|||. |-. .||.++|.. ..... .+.+.+.++.+++.
T Consensus 340 L~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~ 419 (539)
T COG1123 340 LLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLP 419 (539)
T ss_pred CCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCC
Confidence 999999999999987 232234457788999999996 333 499988741 11111 12233334444333
Q ss_pred HHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecC
Q 001055 904 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHR 981 (1171)
Q Consensus 904 ~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~ 981 (1171)
. ...+..+.+||||||||+||||||..+|++||+|||||+||+-+.+.+.+.|+++.+ |.|.|+||||
T Consensus 420 ~----------~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHD 489 (539)
T COG1123 420 P----------EFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHD 489 (539)
T ss_pred H----------HHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCC
Confidence 1 146667789999999999999999999999999999999999999999999998764 6999999999
Q ss_pred hhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCChHHHHHH
Q 001055 982 LNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1021 (1171)
Q Consensus 982 ~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~ 1021 (1171)
+..++. ||||+||.+|+|+|.|+.+++.+++...|.+...
T Consensus 490 l~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L~ 530 (539)
T COG1123 490 LAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLL 530 (539)
T ss_pred HHHHHhhCceEEEEECCeEEEeCCHHHHhcCCCChHHHHHH
Confidence 999998 9999999999999999999999887777775443
No 12
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1e-69 Score=675.09 Aligned_cols=550 Identities=19% Similarity=0.252 Sum_probs=404.6
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhhhccccccCC-C-C-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 467 LILLLCYFLTETLRVSSSTWLSYWTDQSSLKT-H-G-PLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLH 543 (1171)
Q Consensus 467 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~-~-~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 543 (1171)
++.+++.++...+....|..+...+|...... . . ...+..++.++.+...++.+++.++....+.+...++|..+++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 104 (588)
T PRK11174 25 NLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLPPFILLILLFVLRALLAWLRERVGFKAGQHIRQQIRQQVLD 104 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555566666665555321111 1 1 1122333444555667778888889999999999999999999
Q ss_pred HHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 544 SILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQ 623 (1171)
Q Consensus 544 ~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 623 (1171)
+++++|+.+|+++++|++++|+++|++.++..+...+..++..++.++..++.++++++...++++..+++.+.....+.
T Consensus 105 ~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~ 184 (588)
T PRK11174 105 KLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLILLGTAPLIPLFMALVG 184 (588)
T ss_pred HHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988776666666666666555555555555443333322222222233334
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 001055 624 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIW-- 701 (1171)
Q Consensus 624 ~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-- 701 (1171)
+..++..+......+.+.+.+.|.++|+++||+|+.++++.+.+.+..+...+..........+......++..+..+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (588)
T PRK11174 185 MGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSSAVLEFFASISIALV 264 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455567788999999999999999999998888877666655444333222222222222222211111
Q ss_pred -HHHHHHHHhcCCcchh-hhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCC
Q 001055 702 -LTATFAVVQNGSAENQ-EAFA-STMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPP 778 (1171)
Q Consensus 702 -~~~~~~~~~~~~~~~~-~~~~-~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~ 778 (1171)
+.+.+.+...-..+.. ..+. ......+.+...+..++..+............+.+|+.++++.+++.+.. .....
T Consensus 265 ~~~~~~~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~--~~~~~ 342 (588)
T PRK11174 265 AVYFGFSYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQQ--GEKEL 342 (588)
T ss_pred HHHHHHHHhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC--Ccccc
Confidence 1111111111111110 0000 00111112233445566666666677788889999999998776542211 11000
Q ss_pred CCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChH
Q 001055 779 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM 858 (1171)
Q Consensus 779 ~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~ 858 (1171)
..+..+.|+++||+|.|.++ +++|+|+||+|+|||++|||||||||||||+++|+|++ |++|+|.+||+|+++++++
T Consensus 343 -~~~~~~~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~ 419 (588)
T PRK11174 343 -ASNDPVTIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPE 419 (588)
T ss_pred -CCCCCceEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHH
Confidence 11123469999999877544 47999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 937 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 937 (1171)
++|++|+||||+|.+|++||+|||.++. +.++++++++++.++++++++++|+|++|.++++|.+|||||||||+||||
T Consensus 420 ~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARA 499 (588)
T PRK11174 420 SWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARA 499 (588)
T ss_pred HHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999874 479999999999999999999999999999999999999999999999999
Q ss_pred hccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHH
Q 001055 938 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFS 1017 (1171)
Q Consensus 938 ll~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 1017 (1171)
|+++|+|||||||||+||+++++.+++.|++..+++|+|+||||++++..||+|++|++|+|++.|+|+||+++. +.|.
T Consensus 500 ll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~~-~~y~ 578 (588)
T PRK11174 500 LLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAG-GLFA 578 (588)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhcc-hHHH
Confidence 999999999999999999999999999999988899999999999999999999999999999999999999764 5777
Q ss_pred HHHHh
Q 001055 1018 KMVQS 1022 (1171)
Q Consensus 1018 ~~~~~ 1022 (1171)
+++..
T Consensus 579 ~l~~~ 583 (588)
T PRK11174 579 TLLAH 583 (588)
T ss_pred HHHHH
Confidence 77654
No 13
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-71 Score=689.72 Aligned_cols=485 Identities=21% Similarity=0.316 Sum_probs=352.6
Q ss_pred CcEEEEeeEEEcCCCC-CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------
Q 001055 161 PAISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 224 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~-~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------- 224 (1171)
+.|+++|++++|+... +.++|+||||++++||++||+|+||||||||+++|+|+++|++|.+..
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~ 90 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccc
Confidence 4699999999996322 347999999999999999999999999999999999999998775421
Q ss_pred ----------e-cCcEEEEecCC--CCC-cccHHHHHhcCC----CCCH----HHHHHHHHHcCchHHHhcCCCCCcccc
Q 001055 225 ----------I-RGTVAYVPQVS--WIF-NATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEI 282 (1171)
Q Consensus 225 ----------~-~~~i~~v~Q~~--~l~-~~Tv~eni~~g~----~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i 282 (1171)
. +..||||+|+| .++ ..||.|||.++. ..+. +++.++++..++.+. ....
T Consensus 91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~ 162 (623)
T PRK10261 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTIL 162 (623)
T ss_pred ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHH
Confidence 1 13599999998 465 579999998752 1121 233444555555310 0112
Q ss_pred CCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhh-cCEEEEE
Q 001055 283 GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILV 360 (1171)
Q Consensus 283 ~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~-~d~i~~l 360 (1171)
.....+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.+.+...+ |+|+|+||||++++.. ||||++|
T Consensus 163 ~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl 242 (623)
T PRK10261 163 SRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVM 242 (623)
T ss_pred hCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEe
Confidence 3345689999999999999999999999999999999999999999977766544 8999999999999865 8999999
Q ss_pred eCCEEEEecChhHHhhcch-HHH-HHHHHhchhhhhhhccccCccccCCCCCCCCCCCCCCCCCccccccccccccchhh
Q 001055 361 HEGMVKEEGTFEDLSNNGE-LFQ-KLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLI 438 (1171)
Q Consensus 361 ~~G~i~~~g~~~~l~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (1171)
++|++++.|+++++..... .|. .+.. ..+...
T Consensus 243 ~~G~i~~~g~~~~~~~~~~~~~~~~l~~--------------------------------~~~~~~-------------- 276 (623)
T PRK10261 243 YQGEAVETGSVEQIFHAPQHPYTRALLA--------------------------------AVPQLG-------------- 276 (623)
T ss_pred eCCeecccCCHHHhhcCCCChhhhhhhh--------------------------------ccCccc--------------
Confidence 9999999888877642210 000 0000 000000
Q ss_pred hhhhhccccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHH
Q 001055 439 KQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLV 518 (1171)
Q Consensus 439 ~~~~~~~g~~~~~~l~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~ 518 (1171)
.+
T Consensus 277 --------------------------------------------------~~---------------------------- 278 (623)
T PRK10261 277 --------------------------------------------------AM---------------------------- 278 (623)
T ss_pred --------------------------------------------------cc----------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001055 519 TLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIG 598 (1171)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (1171)
.|. . .
T Consensus 279 ---------------------------------------~~~-------~---~-------------------------- 283 (623)
T PRK10261 279 ---------------------------------------KGL-------D---Y-------------------------- 283 (623)
T ss_pred ---------------------------------------ccc-------c---C--------------------------
Confidence 000 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 001055 599 IVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYT 678 (1171)
Q Consensus 599 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~ 678 (1171)
..+.+.
T Consensus 284 ------------------------------------~~~~~~-------------------------------------- 289 (623)
T PRK10261 284 ------------------------------------PRRFPL-------------------------------------- 289 (623)
T ss_pred ------------------------------------Cccccc--------------------------------------
Confidence 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 679 LVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERV 758 (1171)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~ 758 (1171)
.. ...++.
T Consensus 290 ---------------------------------------------------------------------~~---~~~~~~ 297 (623)
T PRK10261 290 ---------------------------------------------------------------------IS---LEHPAK 297 (623)
T ss_pred ---------------------------------------------------------------------cc---cccccc
Confidence 00 000000
Q ss_pred HhhhcCCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCC---------CCCcceeeeEEEcCCCEEEEECCCCCcHHH
Q 001055 759 GNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE---------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSS 829 (1171)
Q Consensus 759 ~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~---------~~~~l~~vs~~i~~Ge~v~ivG~nGsGKST 829 (1171)
..+.... .. .. +....++++||++.|+.. ..++|+||||+|++||++||+|+|||||||
T Consensus 298 ----~~~~~~~----~~-~~---~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKST 365 (623)
T PRK10261 298 ----QEPPIEQ----DT-VV---DGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKST 365 (623)
T ss_pred ----cCccccc----cc-cc---CCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHH
Confidence 0000000 00 00 011249999999999621 135999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCceEEECCEecCCCChH---HHhhheEEEcCCc--cccc-ccHHhhccCC---CCC-CHHHHHHHHHH
Q 001055 830 MLNTLFRIVELERGRILIDGFDIAKFGLM---DLRKILGIIPQSP--VLFS-GTVRFNLDPF---SEH-SDADLWEALER 899 (1171)
Q Consensus 830 Ll~~l~g~~~p~~G~I~i~g~~i~~~~~~---~~r~~i~~v~Q~~--~lf~-~tv~~nl~~~---~~~-~~~~i~~~l~~ 899 (1171)
|+++|+|+++|++|+|.++|.++...+.. .+|++|+||||++ .++. .||.+|+... ... ...+. .
T Consensus 366 Llk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~-----~ 440 (623)
T PRK10261 366 TGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAA-----A 440 (623)
T ss_pred HHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHH-----H
Confidence 99999999999999999999999876543 3567899999998 4665 4999998531 111 11111 1
Q ss_pred hcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEE
Q 001055 900 AHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTML 976 (1171)
Q Consensus 900 ~~~~~~i~~lp~gl~-~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi 976 (1171)
..+.++++.+ |++ ...+....+|||||||||+|||||+.+|+||||||||++||+.+.+.+++.|+++.+ +.|||
T Consensus 441 ~~~~~~L~~~--gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi 518 (623)
T PRK10261 441 ARVAWLLERV--GLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYL 518 (623)
T ss_pred HHHHHHHHHc--CCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 1233444442 553 345666788999999999999999999999999999999999999999999988753 68999
Q ss_pred EEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCChHH
Q 001055 977 IIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 1017 (1171)
Q Consensus 977 ~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 1017 (1171)
+||||++.+.. ||||++|++|+|++.|+++++...+...|.
T Consensus 519 ~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~p~~~~~ 560 (623)
T PRK10261 519 FISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYT 560 (623)
T ss_pred EEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcCCCCHHH
Confidence 99999999987 999999999999999999999865544444
No 14
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=3.2e-69 Score=666.85 Aligned_cols=543 Identities=31% Similarity=0.435 Sum_probs=407.4
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 466 VLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSI 545 (1171)
Q Consensus 466 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 545 (1171)
+.+..++.++...+....+.++...++...........+...+.++.+...++.+...++..+.+.+...++|.++++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l 95 (567)
T COG1132 16 LLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKL 95 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555566665554443311111222233344444556667777778888888999999999999999
Q ss_pred HcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 001055 546 LRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMP-LLLLFYAAYLYYQS 624 (1171)
Q Consensus 546 l~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~~ 624 (1171)
++.|+.+|+++++|++++|+++|+..++..+......+...++.++..+++++...+...++++. +.++.+....+ .+
T Consensus 96 ~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~-~~ 174 (567)
T COG1132 96 LRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLL-AR 174 (567)
T ss_pred HhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 99999999999999999999999999988776664444434455555555555555433333322 22223333333 22
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 001055 625 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWL----AIRLEIVGGLMI 700 (1171)
Q Consensus 625 ~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~ 700 (1171)
..++..+......+.+.+.+.|.++|++++|+|+.++...+.+....+...+............ .+...+...+++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (567)
T COG1132 175 KSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVL 254 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355555556666788999999999999999999998766666555544444332222222222 222222222222
Q ss_pred HHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCC
Q 001055 701 WLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPG 780 (1171)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~ 780 (1171)
+++ .+.+..+ ..+ .+.+..++.+...+..++..+.......+....+.+|+.++++.+++... .... .
T Consensus 255 ~~~-~~~~~~~-~~~-----~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~~~--~ 322 (567)
T COG1132 255 ALG-GFLVLSG-SLT-----VGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVED---PPDP--L 322 (567)
T ss_pred HHH-HHHHHcC-CCC-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---CCCC--C
Confidence 222 2222221 111 22233444455555666666677777778889999999999987554211 1111 1
Q ss_pred CCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH
Q 001055 781 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL 860 (1171)
Q Consensus 781 ~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~ 860 (1171)
....+.|+++||+|+|+++ +++|+|+||+++|||++||||||||||||++++|+|+|+|++|+|.+||+|+++++..++
T Consensus 323 ~~~~~~I~f~~vsf~y~~~-~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~l 401 (567)
T COG1132 323 KDTIGSIEFENVSFSYPGK-KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSL 401 (567)
T ss_pred CCCCCeEEEEEEEEEcCCC-CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHH
Confidence 2344679999999999853 379999999999999999999999999999999999999999999999999999999999
Q ss_pred hhheEEEcCCcccccccHHhhccCCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001055 861 RKILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 939 (1171)
Q Consensus 861 r~~i~~v~Q~~~lf~~tv~~nl~~~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 939 (1171)
|++|++|||++.+|++||++||.++.+ .++++++++++.++++++++++|+|+||.++++|.+||||||||++||||++
T Consensus 402 r~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall 481 (567)
T COG1132 402 RKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALL 481 (567)
T ss_pred HHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHh
Confidence 999999999999999999999998865 6999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHH
Q 001055 940 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1019 (1171)
Q Consensus 940 ~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~ 1019 (1171)
++|+|||||||||+||+++++.+++.+.+..+++|+|+|+||++++.+||+|+||++|+|+|.|+|+||+++ ++.|.++
T Consensus 482 ~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~-~g~y~~l 560 (567)
T COG1132 482 RNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK-GGLYARL 560 (567)
T ss_pred cCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHHHH
Confidence 999999999999999999999999999988888999999999999999999999999999999999999987 6789988
Q ss_pred HHhh
Q 001055 1020 VQST 1023 (1171)
Q Consensus 1020 ~~~~ 1023 (1171)
+..+
T Consensus 561 ~~~~ 564 (567)
T COG1132 561 YQAQ 564 (567)
T ss_pred HHHh
Confidence 8754
No 15
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.2e-69 Score=710.84 Aligned_cols=307 Identities=18% Similarity=0.280 Sum_probs=225.6
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhhe
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 864 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 864 (1171)
..|+++|++++|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. +....|+.|
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~I 2014 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNM 2014 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhE
Confidence 4599999999997533469999999999999999999999999999999999999999999999999865 455678889
Q ss_pred EEEcCCcccccc-cHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 865 GIIPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 865 ~~v~Q~~~lf~~-tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
|||||++.++.. |++|||.++.. ...+++.+. +.+.++. .|+....+....+|||||||||+|||||+.
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~-----v~~lLe~--lgL~~~~dk~~~~LSGGqKqRLslA~ALi~ 2087 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKV-----ANWSIQS--LGLSLYADRLAGTYSGGNKRKLSTAIALIG 2087 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHH--cCCHHHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 999999988864 99999975321 122222111 2233333 255555666678899999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCChHHH
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1018 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~ 1018 (1171)
+|+||||||||+|||+.+++.+++.|++.. +++|||++||++++++. ||||++|++|++++.|+++++.++.+..|.-
T Consensus 2088 ~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~g~g~~l 2167 (2272)
T TIGR01257 2088 CPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGDGYIV 2167 (2272)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHhCCceEE
Confidence 999999999999999999999999999864 57999999999999988 9999999999999999999998766533320
Q ss_pred HHHhhchhh-----HHHHHHHhhcccchhhhhhhhhhhcccchhhccchhhHHhhhhhhhhcccccccchhchhhhhhhH
Q 001055 1019 MVQSTGAAN-----AQYLRSLVLGGEAENKLREENKQIDGQRRWLASSRWAAAAQYALAVSLTSSHNDLQRLEVEDQNNI 1093 (1171)
Q Consensus 1019 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1093 (1171)
......... ........... .++.. ... . + .....+. +......+....
T Consensus 2168 ~i~~~~~~~~~~~~~~~v~~~i~~~------------fp~a~--~~e-~---~---~~~l~~~-----i~~~~~~~if~~ 2221 (2272)
T TIGR01257 2168 TMKIKSPKDDLLPDLNPVEQFFQGN------------FPGSV--QRE-R---H---YNMLQFQ-----VSSSSLARIFQL 2221 (2272)
T ss_pred EEEEcCcchhhhhHHHHHHHHHhhc------------Cccce--eec-c---c---cceEEEE-----eCcccHHHHHHH
Confidence 000000000 00000000000 00000 000 0 0 0000000 001145667788
Q ss_pred HHhhhhhH-HHHHhhcccCchhHHHHhhhcCcc
Q 001055 1094 LKKTKDAV-VTLQGVLEGKHDKEIEESLNQHEV 1125 (1171)
Q Consensus 1094 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 1125 (1171)
|++.|..+ +..|++++++||+||++..++...
T Consensus 2222 L~~~k~~l~I~dysvsqtSLE~VFl~l~~~q~~ 2254 (2272)
T TIGR01257 2222 LISHKDSLLIEEYSVTQTTLDQVFVNFAKQQTE 2254 (2272)
T ss_pred HHhcCCCCCeEEEEcCCCCHHHHHHHHhccccc
Confidence 99888777 899999999999999999977543
No 16
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=3.1e-68 Score=671.86 Aligned_cols=539 Identities=25% Similarity=0.323 Sum_probs=408.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 465 VVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLF--YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAML 542 (1171)
Q Consensus 465 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 542 (1171)
.+...+++.++...+....|.++...+|........... +...++++.++..++.+++.++....+.+...+++..++
T Consensus 137 ~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 216 (686)
T TIGR03797 137 DLLAILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVW 216 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666677777777766654322211111 233344555667788899999999999999999999999
Q ss_pred HHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 543 HSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYY 622 (1171)
Q Consensus 543 ~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 622 (1171)
++++++|+.||+++++|++++|++ |+..+...+...+...+..+...+..++++++.++...++++.++++.+.+...+
T Consensus 217 ~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~ 295 (686)
T TIGR03797 217 DRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVL 295 (686)
T ss_pred HHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999997 7888877665544444444444444444444445444443333333333333344
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q 001055 623 QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEI---VGGLM 699 (1171)
Q Consensus 623 ~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~ 699 (1171)
.+..++..+......+...+.+.|.++|+.++|+++.++++...+.+..+...+..........+....... +..++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 375 (686)
T TIGR03797 296 GLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAA 375 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444555678899999999999999999999887777766665554444333333333332222 22222
Q ss_pred HHHHHHHHHHhcCCcchhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCC
Q 001055 700 IWLTATFAVVQNGSAENQEAFASTMGLLLSYA---LNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNR 776 (1171)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~---~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~ 776 (1171)
+++++.+.+.. +.. ++|.++++. ..+..++..+.......+....+.+|+.++++.++|.+.. ..
T Consensus 376 il~~g~~lv~~-g~l--------tiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~---~~ 443 (686)
T TIGR03797 376 LFAAAISLLGG-AGL--------SLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEA---KT 443 (686)
T ss_pred HHHHHHHHHHc-CCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccC---cC
Confidence 33333333332 222 233333333 3344555566666677788899999999998876553211 11
Q ss_pred CCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCC
Q 001055 777 PPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG 856 (1171)
Q Consensus 777 ~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~ 856 (1171)
. ..+..+.|+++||+|+|+++.+++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.+||+|+++++
T Consensus 444 ~--~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~ 521 (686)
T TIGR03797 444 D--PGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLD 521 (686)
T ss_pred C--CCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCC
Confidence 1 11234579999999999755567999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhheEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001055 857 LMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 936 (1171)
Q Consensus 857 ~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 936 (1171)
+.++|++||||||+|.+|++||+|||.++.+.++++++++++.++++++++++|.|++|.++++|.+||||||||++|||
T Consensus 522 ~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialAR 601 (686)
T TIGR03797 522 VQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIAR 601 (686)
T ss_pred HHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999987667899999999999999999999999999999999999999999999999
Q ss_pred HhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChH
Q 001055 937 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSF 1016 (1171)
Q Consensus 937 all~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~ 1016 (1171)
||+++|+|||||||||+||+++++.+.+.|++. ++|+|+||||++.+..||+|++|++|+|++.|+|+|++++ .+.|
T Consensus 602 All~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~-~~~y 678 (686)
T TIGR03797 602 ALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR-EGLF 678 (686)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhC-CcHH
Confidence 999999999999999999999999999999985 6899999999999999999999999999999999999985 4677
Q ss_pred HHHHH
Q 001055 1017 SKMVQ 1021 (1171)
Q Consensus 1017 ~~~~~ 1021 (1171)
.+++.
T Consensus 679 ~~l~~ 683 (686)
T TIGR03797 679 AQLAR 683 (686)
T ss_pred HHHHH
Confidence 77664
No 17
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-68 Score=606.43 Aligned_cols=503 Identities=21% Similarity=0.323 Sum_probs=406.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHH
Q 001055 510 LLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQ 589 (1171)
Q Consensus 510 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~ 589 (1171)
+++++..+..|+.-+..+....++-..+|.++|+++...+..-..+...|+++||+..|++.+|+.+-..+...+..+..
T Consensus 66 ~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~ 145 (573)
T COG4987 66 GLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVL 145 (573)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHH
Confidence 45667778888888899999999999999999999999999999999999999999999999998776666666665555
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHH
Q 001055 590 LLSTFVLIGIVSTM-SLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADING 668 (1171)
Q Consensus 590 ~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~ 668 (1171)
+..+.+...++++. .+.+.+.++++.+.+...+++..+...+.....+..+.+++.+++.|...++.||+.+.+.+.+.
T Consensus 146 ~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~ 225 (573)
T COG4987 146 IAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALE 225 (573)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHH
Confidence 55444444444433 33333333333444444555555556666667788899999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 001055 669 KSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVL-RLASL 747 (1171)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~-~~~~~ 747 (1171)
...+...+..........|..+.+.++.++++.....+.....+ .+....-...+++++. +.....+.++. .....
T Consensus 226 ~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~-~G~~~~~~aa~~ll~~--f~~~eaf~~L~~~A~~~ 302 (573)
T COG4987 226 ATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVG-AGALAQPGAALALLVI--FAALEAFEPLAPGAFQH 302 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-CCCcchhHHHHHHHHH--HHHHHHHhhhcchhHHH
Confidence 88888888777777778888888887776665533333222111 1111111222222222 22233333333 34455
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcH
Q 001055 748 AENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGK 827 (1171)
Q Consensus 748 ~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGK 827 (1171)
......+..|+.++.+.+++.... +.. .+ .....++++||+|+|+++.+++|+|+||++++||+|||+|+|||||
T Consensus 303 lgq~~~Sa~Rl~~i~~q~~e~~~~-~~~--~~--~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGK 377 (573)
T COG4987 303 LGQVIASARRLNDILDQKPEVTFP-DEQ--TA--TTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGK 377 (573)
T ss_pred hhHHHHHHHHHhhhccCCcccCCC-ccc--cC--CccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCH
Confidence 667778999999988766654321 011 11 1111699999999999887789999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHH
Q 001055 828 SSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAI 906 (1171)
Q Consensus 828 STLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i 906 (1171)
|||+++|.|.++|++|+|.++|.+++.++.+++|+.|++++|.+.+|++|+|+||...+ +.+|++++++++++++.+++
T Consensus 378 STllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~ 457 (573)
T COG4987 378 STLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLL 457 (573)
T ss_pred HHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998765 46999999999999999999
Q ss_pred HHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q 001055 907 RRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTII 986 (1171)
Q Consensus 907 ~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~ 986 (1171)
+..|+|++|.+++.|..|||||||||+|||+|++|.+++||||||.|||+.|++.+++.|.+..+++|+|+||||+..++
T Consensus 458 ~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le 537 (573)
T COG4987 458 ESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLE 537 (573)
T ss_pred HhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCEEEEEeCcEEEEecChhHHhhcCCChHHHHHH
Q 001055 987 DCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1021 (1171)
Q Consensus 987 ~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~ 1021 (1171)
.||||+||++|+++++|+|.+|+++ .+.|.++++
T Consensus 538 ~~drIivl~~Gkiie~G~~~~Ll~~-~g~~~~l~q 571 (573)
T COG4987 538 RMDRIIVLDNGKIIEEGTHAELLAN-NGRYKRLYQ 571 (573)
T ss_pred hcCEEEEEECCeeeecCCHHhhhcc-ccHHHHHhc
Confidence 9999999999999999999999985 567877664
No 18
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-71 Score=670.66 Aligned_cols=449 Identities=20% Similarity=0.311 Sum_probs=340.9
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCC--CCCccce-------------e
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP--VSDASAV-------------I 225 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~--~~g~~~~-------------~ 225 (1171)
+.|+++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++| ++|.+.. .
T Consensus 4 ~~l~~~nl~~~~~---~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~ 80 (506)
T PRK13549 4 YLLEMKNITKTFG---GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTE 80 (506)
T ss_pred ceEEEeeeEEEeC---CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHH
Confidence 3699999999996 35799999999999999999999999999999999999986 6776432 1
Q ss_pred cCcEEEEecCCCCC-cccHHHHHhcCCC------CCHH----HHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHH
Q 001055 226 RGTVAYVPQVSWIF-NATVRDNILFGSA------FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 294 (1171)
Q Consensus 226 ~~~i~~v~Q~~~l~-~~Tv~eni~~g~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqr 294 (1171)
+..+||++|++.++ ..||+||+.++.. .+.+ ++.++++..++.+ .......+||||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGqk 149 (506)
T PRK13549 81 RAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDI-----------NPATPVGNLGLGQQ 149 (506)
T ss_pred HCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCC-----------CcccchhhCCHHHH
Confidence 24599999999876 5799999987632 1111 2223333333321 12344578999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhH
Q 001055 295 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 373 (1171)
Q Consensus 295 qRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 373 (1171)
|||+|||||+.+|++|||||||++||+.++.++++.+.+...+|+|+|+||||++++.. ||++++|++|+++..|+.++
T Consensus 150 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 229 (506)
T PRK13549 150 QLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAG 229 (506)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeeccccc
Confidence 99999999999999999999999999999999999877765568999999999999875 89999999999987765432
Q ss_pred HhhcchHHHHHHHHhchhhhhhhccccCccccCCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhccccchHHHH
Q 001055 374 LSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVL 453 (1171)
Q Consensus 374 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l 453 (1171)
+.... ..
T Consensus 230 ~~~~~-----~~-------------------------------------------------------------------- 236 (506)
T PRK13549 230 MTEDD-----II-------------------------------------------------------------------- 236 (506)
T ss_pred CCHHH-----HH--------------------------------------------------------------------
Confidence 21000 00
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 454 SRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYA 533 (1171)
Q Consensus 454 ~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 533 (1171)
T Consensus 237 -------------------------------------------------------------------------------- 236 (506)
T PRK13549 237 -------------------------------------------------------------------------------- 236 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 534 AKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLL 613 (1171)
Q Consensus 534 ~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 613 (1171)
.++
T Consensus 237 -----------------------------~~~------------------------------------------------ 239 (506)
T PRK13549 237 -----------------------------TMM------------------------------------------------ 239 (506)
T ss_pred -----------------------------HHh------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 614 LFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLE 693 (1171)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1171)
+
T Consensus 240 --------~----------------------------------------------------------------------- 240 (506)
T PRK13549 240 --------V----------------------------------------------------------------------- 240 (506)
T ss_pred --------h-----------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccC
Q 001055 694 IVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIE 773 (1171)
Q Consensus 694 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~ 773 (1171)
+.. . . . ..+....
T Consensus 241 -----------------~~~-----------------------~------------------~---~--~~~~~~~---- 253 (506)
T PRK13549 241 -----------------GRE-----------------------L------------------T---A--LYPREPH---- 253 (506)
T ss_pred -----------------CcC-----------------------c------------------c---c--ccccccc----
Confidence 000 0 0 0 0000000
Q ss_pred CCCCCCCCCCCccEEEEeeEEEeCC-CCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCceEEECCEe
Q 001055 774 SNRPPPGWPSSGSIKFEDVVLRYRP-ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LERGRILIDGFD 851 (1171)
Q Consensus 774 ~~~~~~~~~~~g~i~~~~vs~~y~~-~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~-p~~G~I~i~g~~ 851 (1171)
. +....++++||+++|+. +..++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 254 ----~---~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~ 326 (506)
T PRK13549 254 ----T---IGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKP 326 (506)
T ss_pred ----C---CCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEE
Confidence 0 01124899999999942 12369999999999999999999999999999999999999 599999999999
Q ss_pred cCCCCh-HHHhhheEEEcCCc---cccc-ccHHhhccCCC--CCCH-HHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCC
Q 001055 852 IAKFGL-MDLRKILGIIPQSP---VLFS-GTVRFNLDPFS--EHSD-ADLWEALERAHLKDAIRRNSLGLD-AQVSEAGE 922 (1171)
Q Consensus 852 i~~~~~-~~~r~~i~~v~Q~~---~lf~-~tv~~nl~~~~--~~~~-~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~ 922 (1171)
+...+. ...++.++|+||++ .+|. .|+.+|+.+.. .... ..+........+.++++.+ +++ ...+....
T Consensus 327 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~ 404 (506)
T PRK13549 327 VKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRL--KVKTASPELAIA 404 (506)
T ss_pred CCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhc--CccCCCcccccc
Confidence 865443 34566799999996 3554 59999996421 1100 0000001112345566664 453 24566678
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEE
Q 001055 923 NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVL 1000 (1171)
Q Consensus 923 ~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~ 1000 (1171)
+|||||||||+|||||+.+|+||||||||++||+.+.+.+++.|+++. +++|||+||||++++.. ||++++|++|+++
T Consensus 405 ~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~ 484 (506)
T PRK13549 405 RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLK 484 (506)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 899999999999999999999999999999999999999999999865 47899999999999987 9999999999999
Q ss_pred EecChhHH
Q 001055 1001 EYDTPEEL 1008 (1171)
Q Consensus 1001 ~~g~~~el 1008 (1171)
..|+++++
T Consensus 485 ~~~~~~~~ 492 (506)
T PRK13549 485 GDLINHNL 492 (506)
T ss_pred EEeccccC
Confidence 99988775
No 19
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.3e-70 Score=672.97 Aligned_cols=455 Identities=23% Similarity=0.381 Sum_probs=344.6
Q ss_pred CcEEEEeeEEEcCCC-CCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCC-----CCCccce----------
Q 001055 161 PAISIRNGYFSWDSK-AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----VSDASAV---------- 224 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~-~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~-----~~g~~~~---------- 224 (1171)
+.++++|++++|+.. .++++|+|+||++++||+++|+||||||||||+++|+|+++| ++|.+..
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 369999999999632 135799999999999999999999999999999999999986 5665321
Q ss_pred -----e-cCcEEEEecCCC--CC-cccHHHHHhcCC----CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCC
Q 001055 225 -----I-RGTVAYVPQVSW--IF-NATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV 287 (1171)
Q Consensus 225 -----~-~~~i~~v~Q~~~--l~-~~Tv~eni~~g~----~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~ 287 (1171)
. +..|||++|++. ++ ..|+.+|+.++. .... +++.++++..++.+... .......
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--------~~~~~~~ 155 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAK--------RLTDYPH 155 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--------HHhhCCc
Confidence 1 136999999985 44 469999986421 1111 23445566666543110 1123346
Q ss_pred ccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhh-cCEEEEEeCCEE
Q 001055 288 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMV 365 (1171)
Q Consensus 288 ~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~-~d~i~~l~~G~i 365 (1171)
+|||||||||+|||||+.+|++|||||||++||+.+++++.+.+.+...+ |+|+|+||||++++.. ||||++|++|++
T Consensus 156 ~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i 235 (529)
T PRK15134 156 QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRC 235 (529)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEE
Confidence 89999999999999999999999999999999999999999987775444 8999999999999875 799999999999
Q ss_pred EEecChhHHhhcchHHHHHHHHhchhhhhhhccccCccccCCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhcc
Q 001055 366 KEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERET 445 (1171)
Q Consensus 366 ~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (1171)
++.|+++++..... . .
T Consensus 236 ~~~g~~~~~~~~~~-------------------------------------------~-----------~---------- 251 (529)
T PRK15134 236 VEQNRAATLFSAPT-------------------------------------------H-----------P---------- 251 (529)
T ss_pred EEeCCHHHHhhCCC-------------------------------------------C-----------H----------
Confidence 98887655421100 0 0
Q ss_pred ccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 446 GVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYW 525 (1171)
Q Consensus 446 g~~~~~~l~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 525 (1171)
+.
T Consensus 252 ----------~~-------------------------------------------------------------------- 253 (529)
T PRK15134 252 ----------YT-------------------------------------------------------------------- 253 (529)
T ss_pred ----------HH--------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 526 LIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSL 605 (1171)
Q Consensus 526 ~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (1171)
..+
T Consensus 254 -------------------------------------~~~---------------------------------------- 256 (529)
T PRK15134 254 -------------------------------------QKL---------------------------------------- 256 (529)
T ss_pred -------------------------------------HHH----------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 606 WAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGAN 685 (1171)
Q Consensus 606 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1171)
+ . ..
T Consensus 257 ----------~------~----------~~-------------------------------------------------- 260 (529)
T PRK15134 257 ----------L------N----------SE-------------------------------------------------- 260 (529)
T ss_pred ----------H------H----------hC--------------------------------------------------
Confidence 0 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 001055 686 RWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELP 765 (1171)
Q Consensus 686 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~ 765 (1171)
. +. . +
T Consensus 261 ---------------------------------------------------~-------------------~~----~-~ 265 (529)
T PRK15134 261 ---------------------------------------------------P-------------------SG----D-P 265 (529)
T ss_pred ---------------------------------------------------c-------------------cc----c-c
Confidence 0 00 0 0
Q ss_pred CCCCcccCCCCCCCCCCCCccEEEEeeEEEeCC---------CCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhc
Q 001055 766 SEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRP---------ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 766 ~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~---------~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g 836 (1171)
..+ . . +....++++|++++|+. +..++|+|+||+|++||++||+||||||||||+++|+|
T Consensus 266 -~~~----~---~---~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~G 334 (529)
T PRK15134 266 -VPL----P---E---PASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLR 334 (529)
T ss_pred -ccc----C---C---CCCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 000 0 0 00113899999999952 12369999999999999999999999999999999999
Q ss_pred CCCCCCceEEECCEecCCCChHH---HhhheEEEcCCc--cccc-ccHHhhccCCC----C-CCHHHHHHHHHHhcHHHH
Q 001055 837 IVELERGRILIDGFDIAKFGLMD---LRKILGIIPQSP--VLFS-GTVRFNLDPFS----E-HSDADLWEALERAHLKDA 905 (1171)
Q Consensus 837 ~~~p~~G~I~i~g~~i~~~~~~~---~r~~i~~v~Q~~--~lf~-~tv~~nl~~~~----~-~~~~~i~~~l~~~~~~~~ 905 (1171)
++ |++|+|.++|.++...+... +|++++|+||++ .++. .|+++|+.+.. . ....+. ...+.++
T Consensus 335 l~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~~ 408 (529)
T PRK15134 335 LI-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQR-----EQQVIAV 408 (529)
T ss_pred cC-CCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHH-----HHHHHHH
Confidence 98 58999999999987665443 467899999998 3665 49999986421 0 111111 1123344
Q ss_pred HHHccCCcc-hhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecCh
Q 001055 906 IRRNSLGLD-AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRL 982 (1171)
Q Consensus 906 i~~lp~gl~-~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~ 982 (1171)
++.+ |+. ...+....+|||||||||+|||||+.+|++|||||||++||+.+.+.+++.|+++.+ ++|||+||||+
T Consensus 409 l~~~--~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~ 486 (529)
T PRK15134 409 MEEV--GLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDL 486 (529)
T ss_pred HHHc--CCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH
Confidence 5543 554 345667789999999999999999999999999999999999999999999998753 78999999999
Q ss_pred hhhhh-cCEEEEEeCcEEEEecChhHHhhcC
Q 001055 983 NTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012 (1171)
Q Consensus 983 ~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~ 1012 (1171)
+++.. ||+|++|++|+|++.|+++++++.+
T Consensus 487 ~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 517 (529)
T PRK15134 487 HVVRALCHQVIVLRQGEVVEQGDCERVFAAP 517 (529)
T ss_pred HHHHHhcCeEEEEECCEEEEEcCHHHHhcCC
Confidence 99887 9999999999999999999997654
No 20
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-70 Score=668.89 Aligned_cols=446 Identities=23% Similarity=0.340 Sum_probs=338.5
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecC
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRG 227 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~ 227 (1171)
+.|+++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+.
T Consensus 4 ~~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 80 (510)
T PRK09700 4 PYISMAGIGKSFG---PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80 (510)
T ss_pred ceEEEeeeEEEcC---CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHC
Confidence 3699999999996 357999999999999999999999999999999999999999886532 123
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCC-----C-----CH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChH
Q 001055 228 TVAYVPQVSWIF-NATVRDNILFGSA-----F-----EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 292 (1171)
Q Consensus 228 ~i~~v~Q~~~l~-~~Tv~eni~~g~~-----~-----~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGG 292 (1171)
.|+|++|++.++ ..||+||+.++.. . +. +++.+.++..++.+. .+....+||||
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgG 149 (510)
T PRK09700 81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVD-----------LDEKVANLSIS 149 (510)
T ss_pred CeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCC-----------cccchhhCCHH
Confidence 599999999876 5799999987531 0 11 122233344333221 23445689999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecCh
Q 001055 293 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTF 371 (1171)
Q Consensus 293 qrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 371 (1171)
|||||+|||||+.+|++|||||||++||+.+++++++.+.+...+|+|+|+||||++++.. ||++++|++|++++.|++
T Consensus 150 ~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~ 229 (510)
T PRK09700 150 HKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMV 229 (510)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecch
Confidence 9999999999999999999999999999999999999877765568999999999999875 799999999999887765
Q ss_pred hHHhhcchHHHHHHHHhchhhhhhhccccCccccCCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhccccchHH
Q 001055 372 EDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFK 451 (1171)
Q Consensus 372 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 451 (1171)
+++.... ...
T Consensus 230 ~~~~~~~-----~~~----------------------------------------------------------------- 239 (510)
T PRK09700 230 SDVSNDD-----IVR----------------------------------------------------------------- 239 (510)
T ss_pred hhCCHHH-----HHH-----------------------------------------------------------------
Confidence 5432100 000
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 452 VLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSL 531 (1171)
Q Consensus 452 ~l~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 531 (1171)
T Consensus 240 -------------------------------------------------------------------------------- 239 (510)
T PRK09700 240 -------------------------------------------------------------------------------- 239 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 532 YAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPL 611 (1171)
Q Consensus 532 ~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 611 (1171)
++
T Consensus 240 --------------------------------~~---------------------------------------------- 241 (510)
T PRK09700 240 --------------------------------LM---------------------------------------------- 241 (510)
T ss_pred --------------------------------Hh----------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 612 LLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIR 691 (1171)
Q Consensus 612 l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1171)
+ .+.
T Consensus 242 ----------~-------------~~~----------------------------------------------------- 245 (510)
T PRK09700 242 ----------V-------------GRE----------------------------------------------------- 245 (510)
T ss_pred ----------c-------------CCC-----------------------------------------------------
Confidence 0 000
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcc
Q 001055 692 LEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLV 771 (1171)
Q Consensus 692 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~ 771 (1171)
. . .+ .......
T Consensus 246 ---------------------------------------------~---------------~--~~---~~~~~~~---- 256 (510)
T PRK09700 246 ---------------------------------------------L---------------Q--NR---FNAMKEN---- 256 (510)
T ss_pred ---------------------------------------------c---------------c--cc---ccccccc----
Confidence 0 0 00 0000000
Q ss_pred cCCCCCCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEe
Q 001055 772 IESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFD 851 (1171)
Q Consensus 772 ~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~ 851 (1171)
.. .. .....++++|+++.|. .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 257 --~~-~~---~~~~~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~ 326 (510)
T PRK09700 257 --VS-NL---AHETVFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKD 326 (510)
T ss_pred --cc-cC---CCCcEEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEE
Confidence 00 00 0112499999999763 38999999999999999999999999999999999999999999999999
Q ss_pred cCCCCh-HHHhhheEEEcCCc---ccccc-cHHhhccCCCCCC----HH--HH-HHHHHHhcHHHHHHHccCCcc-hhhh
Q 001055 852 IAKFGL-MDLRKILGIIPQSP---VLFSG-TVRFNLDPFSEHS----DA--DL-WEALERAHLKDAIRRNSLGLD-AQVS 918 (1171)
Q Consensus 852 i~~~~~-~~~r~~i~~v~Q~~---~lf~~-tv~~nl~~~~~~~----~~--~i-~~~l~~~~~~~~i~~lp~gl~-~~~~ 918 (1171)
+...+. ..+|+.|||+||++ .+|.. |+++|+.+..... .. .. ........+.++++.+ |+. ...+
T Consensus 327 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~ 404 (510)
T PRK09700 327 ISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELL--ALKCHSVN 404 (510)
T ss_pred CCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhc--CCCCCCcc
Confidence 865543 34567899999984 46654 9999986431100 00 00 0000112234555554 554 3456
Q ss_pred cCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeC
Q 001055 919 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDS 996 (1171)
Q Consensus 919 ~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~ 996 (1171)
....+|||||||||+|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|||+||||++.+.. ||++++|++
T Consensus 405 ~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~ 484 (510)
T PRK09700 405 QNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCE 484 (510)
T ss_pred CccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEEC
Confidence 6678899999999999999999999999999999999999999999998864 47899999999999877 999999999
Q ss_pred cEEEEecCh
Q 001055 997 GRVLEYDTP 1005 (1171)
Q Consensus 997 G~i~~~g~~ 1005 (1171)
|++++.++.
T Consensus 485 G~i~~~~~~ 493 (510)
T PRK09700 485 GRLTQILTN 493 (510)
T ss_pred CEEEEEecC
Confidence 999988765
No 21
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2e-70 Score=670.31 Aligned_cols=438 Identities=27% Similarity=0.435 Sum_probs=337.8
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCC--CCCCCcccee---------------
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL--PPVSDASAVI--------------- 225 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~--~~~~g~~~~~--------------- 225 (1171)
|+++|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+|++ +|++|.+...
T Consensus 1 l~~~~l~~~~~---~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFD---GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEEC---CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 47899999995 257999999999999999999999999999999999997 6887754321
Q ss_pred ------------------------------cCcEEEEecC-CCCC-cccHHHHHhcCC---CCCH----HHHHHHHHHcC
Q 001055 226 ------------------------------RGTVAYVPQV-SWIF-NATVRDNILFGS---AFEP----ARYEKAIDVTS 266 (1171)
Q Consensus 226 ------------------------------~~~i~~v~Q~-~~l~-~~Tv~eni~~g~---~~~~----~~~~~~~~~~~ 266 (1171)
+..++|++|+ +.++ ..||+||+.++. ..+. +++.+.++.++
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g 157 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ 157 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 2348999998 5666 579999998742 1221 23445566666
Q ss_pred chHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEc
Q 001055 267 LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVT 345 (1171)
Q Consensus 267 l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vt 345 (1171)
+.+..+. ...+|||||||||+|||||+.+|++|||||||++||+.+++++.+.+.+... .|+|+|+||
T Consensus 158 l~~~~~~-----------~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivt 226 (520)
T TIGR03269 158 LSHRITH-----------IARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226 (520)
T ss_pred Chhhhhc-----------CcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 6544333 3368999999999999999999999999999999999999999997776543 489999999
Q ss_pred CCcchhhh-cCEEEEEeCCEEEEecChhHHhhcchHHHHHHHHhchhhhhhhccccCccccCCCCCCCCCCCCCCCCCcc
Q 001055 346 NQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEA 424 (1171)
Q Consensus 346 H~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (1171)
||++++.. ||+|++|++|+++..|+++++...
T Consensus 227 Hd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~----------------------------------------------- 259 (520)
T TIGR03269 227 HWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV----------------------------------------------- 259 (520)
T ss_pred CCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHH-----------------------------------------------
Confidence 99999875 899999999998876654322100
Q ss_pred ccccccccccchhhhhhhhccccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHH
Q 001055 425 SDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFY 504 (1171)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 504 (1171)
T Consensus 260 -------------------------------------------------------------------------------- 259 (520)
T TIGR03269 260 -------------------------------------------------------------------------------- 259 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHH
Q 001055 505 NTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFM 584 (1171)
Q Consensus 505 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~ 584 (1171)
..
T Consensus 260 ------------------------------------------------------------~~------------------ 261 (520)
T TIGR03269 260 ------------------------------------------------------------FM------------------ 261 (520)
T ss_pred ------------------------------------------------------------HH------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHH
Q 001055 585 GQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMA 664 (1171)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~ 664 (1171)
....
T Consensus 262 ------------------------------------------~~~~---------------------------------- 265 (520)
T TIGR03269 262 ------------------------------------------EGVS---------------------------------- 265 (520)
T ss_pred ------------------------------------------hhch----------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 665 DINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRL 744 (1171)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~ 744 (1171)
T Consensus 266 -------------------------------------------------------------------------------- 265 (520)
T TIGR03269 266 -------------------------------------------------------------------------------- 265 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCC---CCCCcceeeeEEEcCCCEEEEEC
Q 001055 745 ASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRP---ELPPVLHGLSFTIPPSDKVGIVG 821 (1171)
Q Consensus 745 ~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~---~~~~~l~~vs~~i~~Ge~v~ivG 821 (1171)
+.. . +...+ . ....++++||+++|++ +..++|+|+||+|++||++||+|
T Consensus 266 ------------~~~---~-~~~~~----~--------~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G 317 (520)
T TIGR03269 266 ------------EVE---K-ECEVE----V--------GEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVG 317 (520)
T ss_pred ------------hhc---c-ccccC----C--------CCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEEC
Confidence 000 0 00000 0 0124999999999952 22369999999999999999999
Q ss_pred CCCCcHHHHHHHHhcCCCCCCceEEEC-CEe---cCCCCh---HHHhhheEEEcCCcccccc-cHHhhccCCC--CCCHH
Q 001055 822 RTGAGKSSMLNTLFRIVELERGRILID-GFD---IAKFGL---MDLRKILGIIPQSPVLFSG-TVRFNLDPFS--EHSDA 891 (1171)
Q Consensus 822 ~nGsGKSTLl~~l~g~~~p~~G~I~i~-g~~---i~~~~~---~~~r~~i~~v~Q~~~lf~~-tv~~nl~~~~--~~~~~ 891 (1171)
|||||||||+++|+|+++|++|+|.++ |.+ +...++ ..+|++|+|+||++.+|.. |+.+|+.+.. .....
T Consensus 318 ~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~ 397 (520)
T TIGR03269 318 TSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDE 397 (520)
T ss_pred CCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHH
Confidence 999999999999999999999999995 643 333322 2456789999999988864 9999996311 11111
Q ss_pred HHHHHHHHhcHHHHHHHccCCcch-----hhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHH
Q 001055 892 DLWEALERAHLKDAIRRNSLGLDA-----QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTI 966 (1171)
Q Consensus 892 ~i~~~l~~~~~~~~i~~lp~gl~~-----~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l 966 (1171)
+. ...+.++++.+ |+.. ..+....+|||||||||+|||||+.+|+||||||||++||+.+.+.+++.|
T Consensus 398 ~~-----~~~~~~~l~~~--~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l 470 (520)
T TIGR03269 398 LA-----RMKAVITLKMV--GFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSI 470 (520)
T ss_pred HH-----HHHHHHHHHhC--CCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 10 11233444443 3432 356667889999999999999999999999999999999999999999999
Q ss_pred HHHc--CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 967 REEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 967 ~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
+++. .+.|||+||||++++.. ||+|++|++|++++.|+++++.+
T Consensus 471 ~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 471 LKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred HHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 8875 37899999999999987 99999999999999999988754
No 22
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=8.2e-68 Score=667.33 Aligned_cols=542 Identities=24% Similarity=0.359 Sum_probs=413.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 465 VVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLF--YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAML 542 (1171)
Q Consensus 465 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 542 (1171)
.+...+++.++...+....|.+....+|..........+ ...++.++.++..++.+++.++......+...++|..++
T Consensus 162 ~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~ 241 (711)
T TIGR00958 162 WLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSVSAGLRGGSFNYTMARINLRIREDLF 241 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666667777777666653322211111 223344455566677788888889999999999999999
Q ss_pred HHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 543 HSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYY 622 (1171)
Q Consensus 543 ~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 622 (1171)
++++++|+.||++++.|++++|+++|++.++..+...+..++..+..++..+++++.+++...++++..+++.+.+...+
T Consensus 242 ~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~ 321 (711)
T TIGR00958 242 RSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVF 321 (711)
T ss_pred HHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888777777777777776666666666655444433333333344445
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 001055 623 QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGA---NRWLAIRLEIVGGLM 699 (1171)
Q Consensus 623 ~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~ 699 (1171)
.+..++..+......+...+.+.|.++|+++||+|+.++++.+.+.+..+...+........ ..|....+..+..++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (711)
T TIGR00958 322 GKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVL 401 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55455555555556667788999999999999999999988777776666544433222111 122222222222223
Q ss_pred HHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCC
Q 001055 700 IWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPP 779 (1171)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~ 779 (1171)
++..+.+.+.. +..+ ...+..++.+...+..++..+............+.+|+.++++.+++.+.. .. ..
T Consensus 402 il~~g~~lv~~-g~it-----~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~--~~--~~ 471 (711)
T TIGR00958 402 VLYYGGQLVLT-GKVS-----SGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT--GT--LA 471 (711)
T ss_pred HHHHHHHHHHc-CCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC--CC--CC
Confidence 33333333332 2221 122223334444566666667777778888899999999998776543211 11 11
Q ss_pred CCCCCccEEEEeeEEEeCCC-CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChH
Q 001055 780 GWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM 858 (1171)
Q Consensus 780 ~~~~~g~i~~~~vs~~y~~~-~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~ 858 (1171)
.++..+.|+++||+|+|++. .+++|+|+||+|+|||++|||||||||||||+++|+|+++|++|+|.+||+|+++++.+
T Consensus 472 ~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~ 551 (711)
T TIGR00958 472 PLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHH 551 (711)
T ss_pred CCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHH
Confidence 12335679999999999753 24799999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 937 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 937 (1171)
.+|++|+||||+|.+|++||+|||.+.. +.++++++++++.++++++++++|.|+||.+++.|.+|||||||||+||||
T Consensus 552 ~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARA 631 (711)
T TIGR00958 552 YLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARA 631 (711)
T ss_pred HHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHH
Confidence 9999999999999999999999998764 467899999999999999999999999999999999999999999999999
Q ss_pred hccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHH
Q 001055 938 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFS 1017 (1171)
Q Consensus 938 ll~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 1017 (1171)
++++|+|||||||||+||+++++.+++ . ...+++|+|+||||++++..||+|++|++|+|++.|+|+||+++. +.|.
T Consensus 632 Ll~~p~ILILDEpTSaLD~~te~~i~~-~-~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~-~~y~ 708 (711)
T TIGR00958 632 LVRKPRVLILDEATSALDAECEQLLQE-S-RSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQ-GCYK 708 (711)
T ss_pred HhcCCCEEEEEccccccCHHHHHHHHH-h-hccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCC-CchH
Confidence 999999999999999999999999999 3 334689999999999999999999999999999999999999864 4666
Q ss_pred HH
Q 001055 1018 KM 1019 (1171)
Q Consensus 1018 ~~ 1019 (1171)
++
T Consensus 709 ~l 710 (711)
T TIGR00958 709 HL 710 (711)
T ss_pred hc
Confidence 54
No 23
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.2e-67 Score=669.54 Aligned_cols=540 Identities=24% Similarity=0.348 Sum_probs=406.6
Q ss_pred HHHHHHHHHHHHHHhHHhhhhhhccccccCCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 468 ILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPL--FYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSI 545 (1171)
Q Consensus 468 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 545 (1171)
..+++.++...+....|.++...+|.......... .+...+.++.++..++.+++.++....+.+...+++..+++++
T Consensus 158 ~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 237 (710)
T TIGR03796 158 YLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHI 237 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555566667777766665332222111 1223344445567788889999999999999999999999999
Q ss_pred HcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 546 LRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQST 625 (1171)
Q Consensus 546 l~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~ 625 (1171)
+++|+.+|+++++|++++|+++| ..+.+.+...+...+..++.++..+++++++++...++++.++++.+.+...+.+.
T Consensus 238 l~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~ 316 (710)
T TIGR03796 238 LRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRR 316 (710)
T ss_pred HcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988 56776665555555555555555555555555554444444443444444444444
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 001055 626 AREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEI---VGGLMIWL 702 (1171)
Q Consensus 626 ~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~ 702 (1171)
.++..+......+...+.+.|.++|+.+||+++.++.+.+.+.+......+..........+......+ +..+++++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~ 396 (710)
T TIGR03796 317 RVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILV 396 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455556678889999999999999999998887777665554444333322222222222222 22222222
Q ss_pred HHHHHHHhcCCcchhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCC--C-C
Q 001055 703 TATFAVVQNGSAENQEAFASTMGLLLSY---ALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIES--N-R 776 (1171)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~---~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~--~-~ 776 (1171)
++.+.+.. +.. ++|.++++ ...+..++..+......+.....+.+|+.++++.+++.+..... . .
T Consensus 397 ~g~~~v~~-g~l--------t~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~ 467 (710)
T TIGR03796 397 VGGLRVME-GQL--------TIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAG 467 (710)
T ss_pred HHHHHHHc-CCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccc
Confidence 23333332 222 23333333 33444555666666777788899999999999877654321100 0 0
Q ss_pred CCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCC
Q 001055 777 PPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG 856 (1171)
Q Consensus 777 ~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~ 856 (1171)
..+.++..+.|+++||+|+|++..+++|+|+||+|+|||++||+||||||||||+++|+|+++|++|+|.+||+|+++++
T Consensus 468 ~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~ 547 (710)
T TIGR03796 468 SEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIP 547 (710)
T ss_pred cccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCC
Confidence 00102235679999999999865567999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhheEEEcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001055 857 LMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 935 (1171)
Q Consensus 857 ~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 935 (1171)
+.++|++||||||+|.+|++||+|||.++. +.++++++++++.++++++++++|.|++|.++++|.+|||||||||+||
T Consensus 548 ~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLA 627 (710)
T TIGR03796 548 REVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIA 627 (710)
T ss_pred HHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHH
Confidence 999999999999999999999999998765 4689999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCCh
Q 001055 936 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSS 1015 (1171)
Q Consensus 936 rall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~ 1015 (1171)
|||+++|+|||||||||+||+++++.+.+.|++ .++|+|+||||++++..||||++|++|+|++.|+|+||+++ .+.
T Consensus 628 Rall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~-~~~ 704 (710)
T TIGR03796 628 RALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAV-GGA 704 (710)
T ss_pred HHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHc-CCc
Confidence 999999999999999999999999999999987 58999999999999999999999999999999999999976 456
Q ss_pred HHHHH
Q 001055 1016 FSKMV 1020 (1171)
Q Consensus 1016 ~~~~~ 1020 (1171)
|.+++
T Consensus 705 y~~l~ 709 (710)
T TIGR03796 705 YARLI 709 (710)
T ss_pred HHHHh
Confidence 76654
No 24
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=4.1e-67 Score=651.80 Aligned_cols=542 Identities=25% Similarity=0.388 Sum_probs=405.9
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 466 VLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFY----NTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAM 541 (1171)
Q Consensus 466 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 541 (1171)
+.+.+++.++...+....|.++...+|............ ..++.++.++..++.+++.++....+.+...++|..+
T Consensus 25 ~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l 104 (592)
T PRK10790 25 LGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDV 104 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555556666667777776666432211111111 1223333445566778888888999999999999999
Q ss_pred HHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 542 LHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLY 621 (1171)
Q Consensus 542 ~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 621 (1171)
++++++.|+.+|++.+.|++++|+++|++.++..+...+..++..+..++..+++++++.+...++++..+++.+.....
T Consensus 105 ~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~ 184 (592)
T PRK10790 105 MDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVI 184 (592)
T ss_pred HHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999877776666666665555555555555544333322222222222333
Q ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-
Q 001055 622 YQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWL-AIRLEIVGGLM- 699 (1171)
Q Consensus 622 ~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~- 699 (1171)
+.+..+...+......+....++.|.++|+.++|+|+.++++.+.+.+..+...+..........+. .....++..++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (592)
T PRK10790 185 YQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALIL 264 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334455667888999999999999999999888777766555444333222211111 11111111111
Q ss_pred --HHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCC
Q 001055 700 --IWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRP 777 (1171)
Q Consensus 700 --~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~ 777 (1171)
+++...+ + ..+..+ .+.+..++.+...+..++..+.......+....+.+|+.++++.+++.... ..
T Consensus 265 ~~~~~~~~~-~-~~g~is-----~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~---~~- 333 (592)
T PRK10790 265 CGLLMLFGF-S-ASGTIE-----VGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGN---DD- 333 (592)
T ss_pred HHHHHHHHH-H-HCCCcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC---Cc-
Confidence 1111111 1 122111 112222333444556666677777778888999999999998765432111 11
Q ss_pred CCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCCh
Q 001055 778 PPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL 857 (1171)
Q Consensus 778 ~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~ 857 (1171)
.++..+.|+++||+|+|+++ +++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.+||.|++++++
T Consensus 334 --~~~~~~~i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~ 410 (592)
T PRK10790 334 --RPLQSGRIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSH 410 (592)
T ss_pred --cCCCCCeEEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCH
Confidence 11234569999999999754 479999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhheEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001055 858 MDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 937 (1171)
Q Consensus 858 ~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 937 (1171)
+.+|++|+||||+|.+|++|+++||.++.+.++++++++++.++++++++++|.|+||.+++.|.+||||||||++||||
T Consensus 411 ~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARa 490 (592)
T PRK10790 411 SVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARV 490 (592)
T ss_pred HHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999887778999999999999999999999999999999999999999999999999
Q ss_pred hccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHH
Q 001055 938 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFS 1017 (1171)
Q Consensus 938 ll~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 1017 (1171)
|+++|+|||||||||+||+++++.+.+.|++..+++|+|+||||++.+..||+|++|++|++++.|+|+||+++. +.|.
T Consensus 491 Ll~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~-~~y~ 569 (592)
T PRK10790 491 LVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQ-GRYW 569 (592)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCC-CHHH
Confidence 999999999999999999999999999999987889999999999999999999999999999999999999874 6788
Q ss_pred HHHHh
Q 001055 1018 KMVQS 1022 (1171)
Q Consensus 1018 ~~~~~ 1022 (1171)
+++..
T Consensus 570 ~l~~~ 574 (592)
T PRK10790 570 QMYQL 574 (592)
T ss_pred HHHHH
Confidence 77764
No 25
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.5e-67 Score=648.94 Aligned_cols=497 Identities=24% Similarity=0.349 Sum_probs=390.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Q 001055 508 YSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQV 587 (1171)
Q Consensus 508 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~ 587 (1171)
+.++.++..++.++..++....+.+...++|.+++++++++|+.+|++.++|++++|+++|++.++..+...+..++..+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~ 145 (574)
T PRK11160 66 VRGAAIGRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAAL 145 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566777888888889999999999999999999999999999999999999999999999988877777777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHH
Q 001055 588 SQLLSTFVLIGIVSTMSLWAIMPLLL-LFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADI 666 (1171)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~ 666 (1171)
+.++..++.++++.+...++++.+++ ++.....++.+..+...+......+.+.+.+.|.++|++++|+|+.++++.+.
T Consensus 146 ~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~ 225 (574)
T PRK11160 146 VVILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQ 225 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHH
Confidence 66666666666665544443322222 22222233344444444444556677888999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHH----HHHHHHH
Q 001055 667 NGKSMDKNIRYTLVNMGANRWLAIRLEIVGGL----MIWLTATFAVVQNGSAENQEAFASTMGLLLSYA----LNITSLL 738 (1171)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~----~~~~~~~ 738 (1171)
+.+..+...+..........+......++..+ ++++++ +.+ .+.. +.|.++++. .....++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~-~~~--~g~~--------t~g~l~a~~~~~~~~~~~~~ 294 (574)
T PRK11160 226 LEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAA-GGV--GGNA--------QPGALIALFVFAALAAFEAL 294 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh--cccc--------chhHHHHHHHHHHHHHHHHH
Confidence 87776665554444333333333333322222 222222 212 1211 222222222 2223455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEE
Q 001055 739 TAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVG 818 (1171)
Q Consensus 739 ~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ 818 (1171)
.++............+.+|+.++++.+++.+.. ..... .+..+.|+++||+|+|+++.+++|+|+||+|+|||++|
T Consensus 295 ~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~--~~~~~--~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~a 370 (574)
T PRK11160 295 MPVAGAFQHLGQVIASARRINEITEQKPEVTFP--TTSTA--AADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVA 370 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--cccCC--CCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEE
Confidence 566666677778889999999998766542111 01111 12345799999999997643479999999999999999
Q ss_pred EECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCC-CCCHHHHHHHH
Q 001055 819 IVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEAL 897 (1171)
Q Consensus 819 ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l 897 (1171)
|+||||||||||+++|+|+++|++|+|.+||+++++++..++|++|+||||+|.+|++|++|||.+.. +.+++++++++
T Consensus 371 ivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al 450 (574)
T PRK11160 371 LLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVL 450 (574)
T ss_pred EECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998764 46889999999
Q ss_pred HHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEE
Q 001055 898 ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLI 977 (1171)
Q Consensus 898 ~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~ 977 (1171)
+.+++++++++ |.|+||.++++|.+||||||||++||||++++|+|||||||||+||+++++.+++.|.+..+++|+|+
T Consensus 451 ~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tvii 529 (574)
T PRK11160 451 QQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLM 529 (574)
T ss_pred HHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred EecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHHHH
Q 001055 978 IAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1021 (1171)
Q Consensus 978 vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~ 1021 (1171)
||||++++..||+|++|++|++++.|+|+||+++ ++.|.+++.
T Consensus 530 itHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~g~y~~l~~ 572 (574)
T PRK11160 530 ITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQ-QGRYYQLKQ 572 (574)
T ss_pred EecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhc-CcHHHHHHh
Confidence 9999999999999999999999999999999976 457877664
No 26
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.3e-67 Score=668.35 Aligned_cols=540 Identities=22% Similarity=0.340 Sum_probs=406.8
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCC-chH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 466 VLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHG-PLF-YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLH 543 (1171)
Q Consensus 466 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~-~~~-~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 543 (1171)
+..++++.++...+....|.++..+.|........ ... +...+.++.+...++.+++.++....+.+...+++..+++
T Consensus 158 ~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 237 (708)
T TIGR01193 158 IVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIK 237 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455556666677777887777754332211 111 2223334455567788889999999999999999999999
Q ss_pred HHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 544 SILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQ 623 (1171)
Q Consensus 544 ~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 623 (1171)
+++++|+.||+++++|++++|++ |...+.+.+.......+..+...+..+++++++.+...++++.++++++.+...+.
T Consensus 238 ~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~ 316 (708)
T TIGR01193 238 HLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFK 316 (708)
T ss_pred HHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998 88887766554444444444444444444444444443333333333333444455
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 001055 624 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRW---LAIRLEIVGGLMI 700 (1171)
Q Consensus 624 ~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~ 700 (1171)
+..++..+......+...+.+.|+++|+.+||+++.++++.+.+.+......+..........+ ....+..+..+++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 396 (708)
T TIGR01193 317 RTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVI 396 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555666677888999999999999999999888777766555444333322222111 1222222233333
Q ss_pred HHHHHHHHHhcCCcchhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCC
Q 001055 701 WLTATFAVVQNGSAENQEAFASTMGLLLSYA---LNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRP 777 (1171)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~---~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~ 777 (1171)
++++.+.+.. +.. ++|.++++. ..+..++..+.......+....+.+|+.++++.++|.+... ..
T Consensus 397 l~~g~~lv~~-g~l--------s~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~---~~ 464 (708)
T TIGR01193 397 LWTGAYLVMR-GKL--------TLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKK---KR 464 (708)
T ss_pred HHHHHHHHHc-CCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc---cc
Confidence 3333343332 222 233333333 34445555666666777888899999999998776543211 10
Q ss_pred CCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCCh
Q 001055 778 PPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL 857 (1171)
Q Consensus 778 ~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~ 857 (1171)
...++..+.|+++||+|+|+++ +++|+|+||+|+|||++||+||||||||||+++|+|+++|++|+|++||+|++++++
T Consensus 465 ~~~~~~~~~I~~~~vsf~y~~~-~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~ 543 (708)
T TIGR01193 465 TELNNLNGDIVINDVSYSYGYG-SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDR 543 (708)
T ss_pred cCCCCCCCcEEEEEEEEEcCCC-CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCH
Confidence 1112335679999999999743 479999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhheEEEcCCcccccccHHhhccCC--CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001055 858 MDLRKILGIIPQSPVLFSGTVRFNLDPF--SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 935 (1171)
Q Consensus 858 ~~~r~~i~~v~Q~~~lf~~tv~~nl~~~--~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 935 (1171)
+++|++||||||+|.+|++||+|||.++ .+.++++++++++.++++++++++|.|++|.++++|.+||||||||++||
T Consensus 544 ~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialA 623 (708)
T TIGR01193 544 HTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALA 623 (708)
T ss_pred HHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999976 34688999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCCh
Q 001055 936 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSS 1015 (1171)
Q Consensus 936 rall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~ 1015 (1171)
||++++|+|||||||||+||+++++.+++.|++. +++|+|+||||++.+..||+|++|++|++++.|+|+|++++ .+.
T Consensus 624 Rall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~-~~~ 701 (708)
T TIGR01193 624 RALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDR-NGF 701 (708)
T ss_pred HHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhc-CCc
Confidence 9999999999999999999999999999999985 68999999999999999999999999999999999999986 456
Q ss_pred HHHHHH
Q 001055 1016 FSKMVQ 1021 (1171)
Q Consensus 1016 ~~~~~~ 1021 (1171)
|.++++
T Consensus 702 y~~l~~ 707 (708)
T TIGR01193 702 YASLIH 707 (708)
T ss_pred HHHHhh
Confidence 776653
No 27
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=5e-70 Score=663.33 Aligned_cols=441 Identities=21% Similarity=0.335 Sum_probs=337.1
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecCc
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 228 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~ 228 (1171)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+..
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 5899999999963 57999999999999999999999999999999999999999886532 1245
Q ss_pred EEEEecCCCCC-cccHHHHHhcCCCC-------CHH----HHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHH
Q 001055 229 VAYVPQVSWIF-NATVRDNILFGSAF-------EPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 296 (1171)
Q Consensus 229 i~~v~Q~~~l~-~~Tv~eni~~g~~~-------~~~----~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqR 296 (1171)
++|++|++.++ ..||+||+.++... +.. ++.+.++..++.+. ......+||||||||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qr 149 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFS-----------SDKLVGELSIGEQQM 149 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCC-----------ccCchhhCCHHHHHH
Confidence 99999998776 57999999886321 111 22233333333221 233456899999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHh
Q 001055 297 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLS 375 (1171)
Q Consensus 297 v~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 375 (1171)
|+|||||+.+|++|||||||++||+.+++++++.+.+....|+|+|+||||++++.. ||+|++|++|+++..|+.+++.
T Consensus 150 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 150 VEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 999999999999999999999999999999998777665568999999999999875 7999999999998766543211
Q ss_pred hcchHHHHHHHHhchhhhhhhccccCccccCCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhccccchHHHHHH
Q 001055 376 NNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSR 455 (1171)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 455 (1171)
... ..
T Consensus 230 ~~~-----~~---------------------------------------------------------------------- 234 (501)
T PRK10762 230 EDS-----LI---------------------------------------------------------------------- 234 (501)
T ss_pred HHH-----HH----------------------------------------------------------------------
Confidence 000 00
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 456 YKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAK 535 (1171)
Q Consensus 456 y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 535 (1171)
T Consensus 235 -------------------------------------------------------------------------------- 234 (501)
T PRK10762 235 -------------------------------------------------------------------------------- 234 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 536 RLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLF 615 (1171)
Q Consensus 536 ~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 615 (1171)
..+
T Consensus 235 ---------------------------~~~-------------------------------------------------- 237 (501)
T PRK10762 235 ---------------------------EMM-------------------------------------------------- 237 (501)
T ss_pred ---------------------------HHh--------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 616 YAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIV 695 (1171)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1171)
+
T Consensus 238 ~------------------------------------------------------------------------------- 238 (501)
T PRK10762 238 V------------------------------------------------------------------------------- 238 (501)
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCC
Q 001055 696 GGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESN 775 (1171)
Q Consensus 696 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~ 775 (1171)
.. +.. ..++..+
T Consensus 239 ---------------~~--------------------------------------------~~~---~~~~~~~------ 250 (501)
T PRK10762 239 ---------------GR--------------------------------------------KLE---DQYPRLD------ 250 (501)
T ss_pred ---------------CC--------------------------------------------Ccc---ccccccc------
Confidence 00 000 0000000
Q ss_pred CCCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCC
Q 001055 776 RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF 855 (1171)
Q Consensus 776 ~~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~ 855 (1171)
.+ +....++++|+++ ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 251 -~~---~~~~~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~ 319 (501)
T PRK10762 251 -KA---PGEVRLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTR 319 (501)
T ss_pred -cC---CCCcEEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCC
Confidence 00 0112489999984 379999999999999999999999999999999999999999999999998766
Q ss_pred ChH-HHhhheEEEcCCc---cccc-ccHHhhccCCCC--CCH--HHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCC
Q 001055 856 GLM-DLRKILGIIPQSP---VLFS-GTVRFNLDPFSE--HSD--ADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFS 925 (1171)
Q Consensus 856 ~~~-~~r~~i~~v~Q~~---~lf~-~tv~~nl~~~~~--~~~--~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~LS 925 (1171)
++. .+|+++||+||++ .++. .|+++|+.+... ... ...........+.++++.+ |+. ...++...+||
T Consensus 320 ~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LS 397 (501)
T PRK10762 320 SPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLF--NIKTPSMEQAIGLLS 397 (501)
T ss_pred CHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhc--CCCCCCccCchhhCC
Confidence 543 3567899999997 3554 599999964210 000 0000000112244555553 453 34566778899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEec
Q 001055 926 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 926 gGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
|||||||+|||||+.+|++|||||||++||+.+.+.+++.|+++. +++|||++|||++++.. ||+|++|++|+++..|
T Consensus 398 gGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~ 477 (501)
T PRK10762 398 GGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEF 477 (501)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEe
Confidence 999999999999999999999999999999999999999999875 47899999999999887 9999999999999999
Q ss_pred ChhHH
Q 001055 1004 TPEEL 1008 (1171)
Q Consensus 1004 ~~~el 1008 (1171)
+++++
T Consensus 478 ~~~~~ 482 (501)
T PRK10762 478 TREQA 482 (501)
T ss_pred ccccC
Confidence 87765
No 28
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.2e-69 Score=660.25 Aligned_cols=450 Identities=23% Similarity=0.398 Sum_probs=343.8
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee-------------cC
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------RG 227 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~-------------~~ 227 (1171)
+.|+++|++++|++ +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+... +.
T Consensus 10 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 86 (510)
T PRK15439 10 PLLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQL 86 (510)
T ss_pred ceEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 36999999999963 579999999999999999999999999999999999999998865321 13
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCCCC---HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHh
Q 001055 228 TVAYVPQVSWIF-NATVRDNILFGSAFE---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 303 (1171)
Q Consensus 228 ~i~~v~Q~~~l~-~~Tv~eni~~g~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL 303 (1171)
.+||++|++.++ ..||+||+.++.... .++..+.++..++... ......+|||||||||+|||||
T Consensus 87 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~aL 155 (510)
T PRK15439 87 GIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLD-----------LDSSAGSLEVADRQIVEILRGL 155 (510)
T ss_pred CEEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcc-----------ccCChhhCCHHHHHHHHHHHHH
Confidence 599999999876 579999999874322 1334445555554322 2334468999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhcchHHH
Q 001055 304 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNGELFQ 382 (1171)
Q Consensus 304 ~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 382 (1171)
+.+|++|||||||++||+.+++++.+.+.+...+|+|+|+||||++++.. ||+|++|++|++++.|+++++..... ..
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~-~~ 234 (510)
T PRK15439 156 MRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTDDI-IQ 234 (510)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHHHH-HH
Confidence 99999999999999999999999999877765568999999999999865 89999999999998887765432100 00
Q ss_pred HHHHHhchhhhhhhccccCccccCCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhccccchHHHHHHHHHHhhh
Q 001055 383 KLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDALGG 462 (1171)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~y~~~~~~ 462 (1171)
.+. . .. . .
T Consensus 235 ~~~----------~---~~--~-----~---------------------------------------------------- 242 (510)
T PRK15439 235 AIT----------P---AA--R-----E---------------------------------------------------- 242 (510)
T ss_pred HHh----------C---cc--c-----c----------------------------------------------------
Confidence 000 0 00 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 463 LWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAML 542 (1171)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 542 (1171)
T Consensus 243 -------------------------------------------------------------------------------- 242 (510)
T PRK15439 243 -------------------------------------------------------------------------------- 242 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 543 HSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYY 622 (1171)
Q Consensus 543 ~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 622 (1171)
. .+
T Consensus 243 ------------~---------------~~-------------------------------------------------- 245 (510)
T PRK15439 243 ------------K---------------SL-------------------------------------------------- 245 (510)
T ss_pred ------------c---------------cc--------------------------------------------------
Confidence 0 00
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 623 QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWL 702 (1171)
Q Consensus 623 ~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 702 (1171)
.
T Consensus 246 -------------~------------------------------------------------------------------ 246 (510)
T PRK15439 246 -------------S------------------------------------------------------------------ 246 (510)
T ss_pred -------------c------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCC
Q 001055 703 TATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP 782 (1171)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~ 782 (1171)
..++.. ...+...+ . .+ +
T Consensus 247 ---------------------------------------------------~~~~~~--~~~~~~~~----~--~~---~ 264 (510)
T PRK15439 247 ---------------------------------------------------ASQKLW--LELPGNRR----Q--QA---A 264 (510)
T ss_pred ---------------------------------------------------cccccc--cccccccc----c--cC---C
Confidence 000000 00000000 0 00 0
Q ss_pred CCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH-Hh
Q 001055 783 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LR 861 (1171)
Q Consensus 783 ~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~-~r 861 (1171)
.+..++++|+++ .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...++.. .|
T Consensus 265 ~~~~l~~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 337 (510)
T PRK15439 265 GAPVLTVEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLA 337 (510)
T ss_pred CCceEEEeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHh
Confidence 112489999983 2699999999999999999999999999999999999999999999999998766554 45
Q ss_pred hheEEEcCCc---cccc-ccHHhhccCC--C--CC--CHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHH
Q 001055 862 KILGIIPQSP---VLFS-GTVRFNLDPF--S--EH--SDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 862 ~~i~~v~Q~~---~lf~-~tv~~nl~~~--~--~~--~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~LSgGqkq 930 (1171)
+.|+|+||++ .+|. .|+.+|+... . .. .... ....+.++++.+ |+. ...+....+|||||||
T Consensus 338 ~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kq 410 (510)
T PRK15439 338 RGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAR-----ENAVLERYRRAL--NIKFNHAEQAARTLSGGNQQ 410 (510)
T ss_pred CCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHH-----HHHHHHHHHHHc--CCCCCCccCccccCCcHHHH
Confidence 6799999985 3665 4999998421 0 00 1111 112244556554 554 4466777889999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHH
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1008 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 1008 (1171)
||+|||||+.+|+||||||||+|||+.+.+.+++.|+++. +++|||+||||++++.. ||++++|++|+++..|+++++
T Consensus 411 rl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 411 KVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred HHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999999999999999999999999999875 47899999999999987 999999999999999988776
Q ss_pred h
Q 001055 1009 L 1009 (1171)
Q Consensus 1009 ~ 1009 (1171)
.
T Consensus 491 ~ 491 (510)
T PRK15439 491 N 491 (510)
T ss_pred C
Confidence 4
No 29
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.7e-69 Score=643.59 Aligned_cols=487 Identities=25% Similarity=0.349 Sum_probs=342.7
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecC-cEEEEecCCCCC-
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG-TVAYVPQVSWIF- 239 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~-~i~~v~Q~~~l~- 239 (1171)
.|.++|++++|+ ++++|+++||++.+|+++||||+||||||||||+|+|...|++|.+....+ +|||++|++.+.
T Consensus 3 ~i~~~~ls~~~g---~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~ 79 (530)
T COG0488 3 MITLENLSLAYG---DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDP 79 (530)
T ss_pred eEEEeeeEEeeC---CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCC
Confidence 589999999995 478999999999999999999999999999999999999999988776655 799999999997
Q ss_pred cccHHHHHhcCCCCCH---HHHHHHHHH---------cCc-------------hHHHhcCCCCCccccCCCCCccChHHH
Q 001055 240 NATVRDNILFGSAFEP---ARYEKAIDV---------TSL-------------QHDLDLLPGGDVTEIGERGVNISGGQK 294 (1171)
Q Consensus 240 ~~Tv~eni~~g~~~~~---~~~~~~~~~---------~~l-------------~~~~~~~~~~~~~~i~~~g~~LSGGqr 294 (1171)
..||.+.+.-+...-. .+++.+... ..+ .+....+.+...+.......+||||||
T Consensus 80 ~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r 159 (530)
T COG0488 80 EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWR 159 (530)
T ss_pred CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHH
Confidence 5699999987632100 111111100 000 011111122222222455689999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEE-EecChh
Q 001055 295 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVK-EEGTFE 372 (1171)
Q Consensus 295 qRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~-~~g~~~ 372 (1171)
.||+|||||+.+||+|||||||||||.+++.|+.++|... +| |+|+||||++||+. |++|+.++.|++. +.|+++
T Consensus 160 ~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~ 236 (530)
T COG0488 160 RRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYS 236 (530)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCCHHHHHHHhhheEEecCCceeEecCCHH
Confidence 9999999999999999999999999999999999988654 35 99999999999997 6999999999764 577777
Q ss_pred HHhhcchHHHHHHHHhchhhhhhhccccCccccCCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhccccchHHH
Q 001055 373 DLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKV 452 (1171)
Q Consensus 373 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 452 (1171)
.+....+..........
T Consensus 237 ~~~~~r~~~~~~~~~~~--------------------------------------------------------------- 253 (530)
T COG0488 237 SYLEQKAERLRQEAAAY--------------------------------------------------------------- 253 (530)
T ss_pred HHHHHHHHHHHHHHHHH---------------------------------------------------------------
Confidence 66543221110000000
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 453 LSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLY 532 (1171)
Q Consensus 453 l~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~ 532 (1171)
T Consensus 254 -------------------------------------------------------------------------------- 253 (530)
T COG0488 254 -------------------------------------------------------------------------------- 253 (530)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 533 AAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLL 612 (1171)
Q Consensus 533 ~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 612 (1171)
T Consensus 254 -------------------------------------------------------------------------------- 253 (530)
T COG0488 254 -------------------------------------------------------------------------------- 253 (530)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 613 LLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRL 692 (1171)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1171)
.+..++ ..+..++++....-+.-
T Consensus 254 ----------~~~~~~------------~~~~~~~i~r~~~~~~~----------------------------------- 276 (530)
T COG0488 254 ----------EKQQKE------------LAKEQEWIRRGKAAASK----------------------------------- 276 (530)
T ss_pred ----------HHHHHH------------HHHHHHHHHHHHhccch-----------------------------------
Confidence 000000 00000000000000000
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hcCCCCCCc
Q 001055 693 EIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNY--IELPSEAPL 770 (1171)
Q Consensus 693 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~--~~~~~e~~~ 770 (1171)
....+.....++++... ...+.....
T Consensus 277 ----------------------------------------------------~k~a~sr~k~l~k~~~~~~~~~~~~~~~ 304 (530)
T COG0488 277 ----------------------------------------------------AKKAKSRIKRLEKLEARLAEERPVEEGK 304 (530)
T ss_pred ----------------------------------------------------HHHHHHHHHHHHHHHhhhhhcccccccc
Confidence 00000001111122110 001110000
Q ss_pred ccCCCCCCCC-CCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 001055 771 VIESNRPPPG-WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 849 (1171)
Q Consensus 771 ~~~~~~~~~~-~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g 849 (1171)
...-..+++. ...+..++++|++++|++. +++++++||.|.+|+++||+||||+|||||+++|+|...|.+|+|.++-
T Consensus 305 ~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~ 383 (530)
T COG0488 305 PLAFRFPPPGKRLGKLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE 383 (530)
T ss_pred cceeeccCCcccCCCeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC
Confidence 0000001111 1223469999999999765 4799999999999999999999999999999999999999999999872
Q ss_pred EecCCCChHHHhhheEEEcCCc-cccc-ccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCCh
Q 001055 850 FDIAKFGLMDLRKILGIIPQSP-VLFS-GTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSV 926 (1171)
Q Consensus 850 ~~i~~~~~~~~r~~i~~v~Q~~-~lf~-~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSg 926 (1171)
.-++||++|+. .++. .|+.+++.... ...+.+++..|.+.++.. +. +......|||
T Consensus 384 -----------~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~---------~~-~~~~v~~LSG 442 (530)
T COG0488 384 -----------TVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTG---------ED-QEKPVGVLSG 442 (530)
T ss_pred -----------ceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCCh---------HH-HhCchhhcCH
Confidence 13699999998 3443 38888886543 223555666666544432 22 2455678999
Q ss_pred hHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEe-cC
Q 001055 927 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEY-DT 1004 (1171)
Q Consensus 927 Gqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~-g~ 1004 (1171)
|||.||.||+.++.+|++||||||||+||.++...+.++|.+ .++|||+||||.++++. |++|+++++ ++..+ |+
T Consensus 443 GEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~--f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~ 519 (530)
T COG0488 443 GEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLD--FEGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGG 519 (530)
T ss_pred hHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCC
Confidence 999999999999999999999999999999999999999998 68899999999999999 999999999 88877 99
Q ss_pred hhHHhhc
Q 001055 1005 PEELLSN 1011 (1171)
Q Consensus 1005 ~~el~~~ 1011 (1171)
++++.+.
T Consensus 520 y~~y~~~ 526 (530)
T COG0488 520 YEDYLEQ 526 (530)
T ss_pred HHHHHHh
Confidence 9988754
No 30
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4e-69 Score=664.65 Aligned_cols=513 Identities=23% Similarity=0.343 Sum_probs=402.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHH
Q 001055 502 LFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVN 581 (1171)
Q Consensus 502 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~ 581 (1171)
.-+.+.|..++++..+..++...++...+.|...++|++++..+||+++.|||.+..|++..|+++|+..+++.+...+.
T Consensus 71 ~~~~l~~~~lg~~~~~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg 150 (1228)
T KOG0055|consen 71 SKVALYFVYLGVGVFISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVG 150 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHH
Confidence 34555677777888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHH
Q 001055 582 MFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYD 661 (1171)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~ 661 (1171)
.++..+..++..+++.++..|....+++++.++....-..+.+........+....+..-+...|++.+++|+.+|+.++
T Consensus 151 ~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~ 230 (1228)
T KOG0055|consen 151 NFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEK 230 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcH
Confidence 88888888888888877776655544443333222221111111111222222233344567789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHH
Q 001055 662 RMADINGKSMDKNIRYTLVNMGANR----WLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSL 737 (1171)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 737 (1171)
+..+++.+.+....+.......... +..+++....++.+|+++.+.... ..+....+....+. +.....
T Consensus 231 ~e~~ry~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~--~~~~g~v~~v~~~v-----l~g~~s 303 (1228)
T KOG0055|consen 231 KEIERYSKALENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNG--GYNGGDVITVFFSV-----LIGGMS 303 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCceEEEEEeeh-----hhhhhh
Confidence 9999999988888877665433221 122223333445555554444331 11111111111111 111112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCCC-CCcceeeeEEEcCCCE
Q 001055 738 LTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPEL-PPVLHGLSFTIPPSDK 816 (1171)
Q Consensus 738 ~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~-~~~l~~vs~~i~~Ge~ 816 (1171)
++........+.++..+..++.+.++..+.......... ......|.|+|+||+|+|+.+. .++|+|+||+|++|+.
T Consensus 304 Lgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~--~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~ 381 (1228)
T KOG0055|consen 304 LGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGR--VLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQT 381 (1228)
T ss_pred hhccccchHHHhccccchHHHHHHhcCCCCCCcccccCC--cccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCE
Confidence 222333334455667788888887765443211111111 1223468899999999998652 3799999999999999
Q ss_pred EEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCC-CCCHHHHHH
Q 001055 817 VGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWE 895 (1171)
Q Consensus 817 v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~ 895 (1171)
|||||||||||||++++|.|+|+|++|+|++||.|+++++.+++|++||+|.|+|.||++||+||+.+.. +.+++++.+
T Consensus 382 valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~ 461 (1228)
T KOG0055|consen 382 VALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEE 461 (1228)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999876 468999999
Q ss_pred HHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEE
Q 001055 896 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTM 975 (1171)
Q Consensus 896 ~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tv 975 (1171)
+++.+++++|+..+|+|++|.++++|.+||||||||+||||||+++|+|||||||||+||+++++.++++|++..+|+|.
T Consensus 462 a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTT 541 (1228)
T KOG0055|consen 462 AAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTT 541 (1228)
T ss_pred HHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHhhc
Q 001055 976 LIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTG 1024 (1171)
Q Consensus 976 i~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~~ 1024 (1171)
|+||||++++++||+|+||++|+|+|.|+|+||++.. +.|+++++.+.
T Consensus 542 ivVaHRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~-G~Y~~lv~~Q~ 589 (1228)
T KOG0055|consen 542 IVVAHRLSTIRNADKIAVMEEGKIVEQGTHDELIALG-GIYSSLVRLQE 589 (1228)
T ss_pred EEEeeehhhhhccCEEEEEECCEEEEecCHHHHHhcc-chHHHHHHHHh
Confidence 9999999999999999999999999999999999987 89999987653
No 31
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-69 Score=656.61 Aligned_cols=201 Identities=17% Similarity=0.338 Sum_probs=169.7
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|. +++|
T Consensus 319 ~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i~ 385 (530)
T PRK15064 319 ALEVENLTKGFDNG--PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANIG 385 (530)
T ss_pred eEEEEeeEEeeCCc--eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEEE
Confidence 59999999999753 6999999999999999999999999999999999999999999999872 4799
Q ss_pred EEcCCcc--ccc-ccHHhhccCCCC--CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 866 IIPQSPV--LFS-GTVRFNLDPFSE--HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 866 ~v~Q~~~--lf~-~tv~~nl~~~~~--~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
|+||++. ++. .|+++|+..+.. ..++++.+.++..++. ....+....+||||||||++|||||+.
T Consensus 386 ~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LSgGq~qrv~la~al~~ 455 (530)
T PRK15064 386 YYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFS----------QDDIKKSVKVLSGGEKGRMLFGKLMMQ 455 (530)
T ss_pred EEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCC----------hhHhcCcccccCHHHHHHHHHHHHHhc
Confidence 9999974 443 599999864321 1233344444443331 123455667899999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEE-EecChhHHhhc
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVL-EYDTPEELLSN 1011 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~-~~g~~~el~~~ 1011 (1171)
+|+||||||||++||+.+...+++.|++. ++|||+||||++++.. ||+|++|++|+++ ..|+++++++.
T Consensus 456 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 456 KPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 99999999999999999999999999885 5699999999999987 9999999999998 67999888754
No 32
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1e-66 Score=647.66 Aligned_cols=501 Identities=24% Similarity=0.353 Sum_probs=396.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 001055 509 SLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVS 588 (1171)
Q Consensus 509 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~ 588 (1171)
.++.++..++.+++.++....+.+....++..+++++++.|..+|++.+.|++++|+++|+..+...+...+..++..++
T Consensus 72 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~ 151 (582)
T PRK11176 72 IGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGA 151 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777888888888899999999999999999999999999999999999999999998877766666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHH
Q 001055 589 QLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADING 668 (1171)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~ 668 (1171)
.++..+++++++.+...++++.++++.+++.....+..++..+......+.+...+.|.++|+.++|+|+.++.+.+.+.
T Consensus 152 ~~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~ 231 (582)
T PRK11176 152 SIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFD 231 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHH
Confidence 66666666666655544443333333333344444444444444455567788899999999999999999998888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 669 KSMDKNIRYTLVNMGANRWLAIRLEIVGG---LMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLA 745 (1171)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~ 745 (1171)
+..+...+..........+......++.. +++++++.+.+.. +..+ .+.+..++.+...+..++..+....
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~-g~is-----~g~~~~~~~~~~~~~~pl~~l~~~~ 305 (582)
T PRK11176 232 KVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVM-DTLT-----AGTITVVFSSMIALMRPLKSLTNVN 305 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCC-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766655544433333333333333222 2222222233332 2221 1222233444445566666777777
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCC
Q 001055 746 SLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGA 825 (1171)
Q Consensus 746 ~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGs 825 (1171)
...+....+.+|+.++.+.+++.+.. ... ..+..+.|+++||+|+|++..+++|+|+||+|+|||++||+|+|||
T Consensus 306 ~~~~~~~~~~~ri~~~~~~~~~~~~~---~~~--~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGs 380 (582)
T PRK11176 306 AQFQRGMAACQTLFAILDLEQEKDEG---KRV--IERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGS 380 (582)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCCCC---CcC--CCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCC
Confidence 77888889999999988766542211 111 1123456999999999976545799999999999999999999999
Q ss_pred cHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCC--CCCHHHHHHHHHHhcHH
Q 001055 826 GKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS--EHSDADLWEALERAHLK 903 (1171)
Q Consensus 826 GKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~--~~~~~~i~~~l~~~~~~ 903 (1171)
|||||+++|+|+++|++|+|.+||+|+++++.+++|++|+||||++.+|++|+++||.++. ..++++++++++.++++
T Consensus 381 GKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~ 460 (582)
T PRK11176 381 GKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAM 460 (582)
T ss_pred CHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcH
Confidence 9999999999999999999999999999999999999999999999999999999998753 36899999999999999
Q ss_pred HHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChh
Q 001055 904 DAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN 983 (1171)
Q Consensus 904 ~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~ 983 (1171)
++++++|.|+||.+++.|.+||||||||++|||||+++|+|||||||||+||+++++.+.+.|.+..+++|+|+||||++
T Consensus 461 ~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~ 540 (582)
T PRK11176 461 DFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLS 540 (582)
T ss_pred HHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999878899999999999
Q ss_pred hhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHHHH
Q 001055 984 TIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1021 (1171)
Q Consensus 984 ~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~ 1021 (1171)
.+..||+|++|++|+|++.|+|++++++. +.|++++.
T Consensus 541 ~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~-~~y~~l~~ 577 (582)
T PRK11176 541 TIEKADEILVVEDGEIVERGTHAELLAQN-GVYAQLHK 577 (582)
T ss_pred HHHhCCEEEEEECCEEEEeCCHHHHHhCC-ChHHHHHH
Confidence 99999999999999999999999999874 56777765
No 33
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-67 Score=603.76 Aligned_cols=508 Identities=24% Similarity=0.329 Sum_probs=407.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHH
Q 001055 505 NTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFM 584 (1171)
Q Consensus 505 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~ 584 (1171)
...+.++.+...++...+.......+.++...+|+.+++++.+++..+-...++|++.+.++..++.++.++..+++..+
T Consensus 43 ~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~ 122 (559)
T COG4988 43 LILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMF 122 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555567777888888888899999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHH
Q 001055 585 GQVSQLLSTFVLIGIVSTMS---LWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYD 661 (1171)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~ 661 (1171)
...+..+..++.+++..+.. +++.+|++++++.+ .....+...+..-..-..+.++|.+.++|+.|+|.|+..+
T Consensus 123 ~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMil---vg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~ 199 (559)
T COG4988 123 LSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMIL---VGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTE 199 (559)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccH
Confidence 87777766666666665543 34455665554433 2333333334444555678899999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001055 662 RMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAV 741 (1171)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~ 741 (1171)
...+...+......+.++.........++.++++..+.+.+++.+..+.--..+....+.+.. ++..+.-+..++..+
T Consensus 200 ~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~--~LiLAPEff~PlR~l 277 (559)
T COG4988 200 ATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLF--VLILAPEFFQPLRDL 277 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHH--HHHHhHHHHHHHHHH
Confidence 888887777777777777666666667777777766655555444332211001111122111 122223345555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEEC
Q 001055 742 LRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVG 821 (1171)
Q Consensus 742 ~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG 821 (1171)
...+....+...+.+.+..+.+.|.+.+...+. ....+.....++++|++++|+++. ++++|+||++++|+++||||
T Consensus 278 Gs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~--~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talvG 354 (559)
T COG4988 278 GSFFHAAAAGEAAADKLFTLLESPVATPGSGEK--AEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTALVG 354 (559)
T ss_pred HHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccc--cccccCCCceeeecceEEecCCCC-cccCCceeEecCCcEEEEEC
Confidence 666666667778888888888776654322111 111122233466679999998764 79999999999999999999
Q ss_pred CCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCCC-CCHHHHHHHHHHh
Q 001055 822 RTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERA 900 (1171)
Q Consensus 822 ~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~-~~~~~i~~~l~~~ 900 (1171)
+||||||||+++|+|+++|++|+|.+||++..+++...+|+++++|||+|.+|++|+||||.++.+ .+++++.++++.+
T Consensus 355 ~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a 434 (559)
T COG4988 355 ASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQA 434 (559)
T ss_pred CCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999998765 6899999999999
Q ss_pred cHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEec
Q 001055 901 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAH 980 (1171)
Q Consensus 901 ~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH 980 (1171)
++.++++. |.|+|+.++++|..|||||+|||+|||||+++++++|+||||++||.+|++.|.+.|.++.+++|||+|||
T Consensus 435 ~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itH 513 (559)
T COG4988 435 GLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITH 513 (559)
T ss_pred cHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEc
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHh
Q 001055 981 RLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1022 (1171)
Q Consensus 981 ~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~ 1022 (1171)
|++.+.+||+|+||++|++++.|+|++|.++ .+.|++++..
T Consensus 514 rl~~~~~~D~I~vld~G~l~~~g~~~~L~~~-~~~y~~l~~~ 554 (559)
T COG4988 514 RLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQ 554 (559)
T ss_pred ChHHHhcCCEEEEecCCceeccCCHHHHhhc-CcHHHHHHHH
Confidence 9999999999999999999999999999876 4578877765
No 34
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-68 Score=659.56 Aligned_cols=199 Identities=23% Similarity=0.374 Sum_probs=164.7
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.|+++||+++|++. ++|+|+||+|.+||++||+||||||||||+++|+|+++|++|+|.+++. .++|
T Consensus 312 ~l~~~~l~~~y~~~--~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~ig 378 (638)
T PRK10636 312 LLKMEKVSAGYGDR--IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKLG 378 (638)
T ss_pred eEEEEeeEEEeCCe--eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEEE
Confidence 59999999999753 6999999999999999999999999999999999999999999999741 2699
Q ss_pred EEcCCc--cccc-ccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 866 IIPQSP--VLFS-GTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 866 ~v~Q~~--~lf~-~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
|+||++ .++. .|+.+++.... ...+..+. +++..+ ++. .........|||||||||+|||+|+.
T Consensus 379 y~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---------~~L~~~--~l~~~~~~~~~~~LSgGekqRl~La~~l~~ 447 (638)
T PRK10636 379 YFAQHQLEFLRADESPLQHLARLAPQELEQKLR---------DYLGGF--GFQGDKVTEETRRFSGGEKARLVLALIVWQ 447 (638)
T ss_pred EecCcchhhCCccchHHHHHHHhCchhhHHHHH---------HHHHHc--CCChhHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 999985 2333 37777653211 11122233 344443 343 23455667899999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEE-EecChhHHhh
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVL-EYDTPEELLS 1010 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~-~~g~~~el~~ 1010 (1171)
+|+||||||||++||+.+...+.+.|.++ ++|||+||||++++.. ||+|++|++|+++ ..|+++++..
T Consensus 448 ~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 448 RPNLLLLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 99999999999999999999999999986 4699999999999987 9999999999998 6699999853
No 35
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-69 Score=658.85 Aligned_cols=445 Identities=21% Similarity=0.304 Sum_probs=335.7
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecC
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRG 227 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~ 227 (1171)
+.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+.
T Consensus 3 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 79 (501)
T PRK11288 3 PYLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAA 79 (501)
T ss_pred ceEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhC
Confidence 36999999999963 46999999999999999999999999999999999999999886532 134
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCC------CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHH
Q 001055 228 TVAYVPQVSWIF-NATVRDNILFGSA------FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 296 (1171)
Q Consensus 228 ~i~~v~Q~~~l~-~~Tv~eni~~g~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqR 296 (1171)
.|+|++|++.++ ..||+||+.++.. .+. +++.+.++..++.. .......+||||||||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qr 148 (501)
T PRK11288 80 GVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI-----------DPDTPLKYLSIGQRQM 148 (501)
T ss_pred CEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCC-----------CcCCchhhCCHHHHHH
Confidence 699999999887 5699999987531 111 12333344443321 1233456899999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHh
Q 001055 297 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLS 375 (1171)
Q Consensus 297 v~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 375 (1171)
|+|||||+.+|+++||||||++||+.+++++++.+.+...+|+|+|+||||++++.. ||||++|++|+++..++..+..
T Consensus 149 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 228 (501)
T PRK11288 149 VEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQV 228 (501)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCccccC
Confidence 999999999999999999999999999999999887765568999999999999865 8999999999987543210000
Q ss_pred hcchHHHHHHHHhchhhhhhhccccCccccCCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhccccchHHHHHH
Q 001055 376 NNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSR 455 (1171)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 455 (1171)
. .+. +
T Consensus 229 ~---------------------------------------------------------------~~~----------~-- 233 (501)
T PRK11288 229 D---------------------------------------------------------------RDQ----------L-- 233 (501)
T ss_pred C---------------------------------------------------------------HHH----------H--
Confidence 0 000 0
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 456 YKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAK 535 (1171)
Q Consensus 456 y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 535 (1171)
T Consensus 234 -------------------------------------------------------------------------------- 233 (501)
T PRK11288 234 -------------------------------------------------------------------------------- 233 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 536 RLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLF 615 (1171)
Q Consensus 536 ~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 615 (1171)
...+
T Consensus 234 --------------------------~~~~-------------------------------------------------- 237 (501)
T PRK11288 234 --------------------------VQAM-------------------------------------------------- 237 (501)
T ss_pred --------------------------HHHh--------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 616 YAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIV 695 (1171)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1171)
.
T Consensus 238 --------------------~----------------------------------------------------------- 238 (501)
T PRK11288 238 --------------------V----------------------------------------------------------- 238 (501)
T ss_pred --------------------c-----------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCC
Q 001055 696 GGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESN 775 (1171)
Q Consensus 696 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~ 775 (1171)
.... .+ ..... + .
T Consensus 239 ---------------~~~~-----------------------------------------~~---~~~~~---~-----~ 251 (501)
T PRK11288 239 ---------------GREI-----------------------------------------GD---IYGYR---P-----R 251 (501)
T ss_pred ---------------CCCc-----------------------------------------cc---ccccc---c-----c
Confidence 0000 00 00000 0 0
Q ss_pred CCCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCC
Q 001055 776 RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF 855 (1171)
Q Consensus 776 ~~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~ 855 (1171)
. +....++++|++++ .+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 252 --~---~~~~~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~ 320 (501)
T PRK11288 252 --P---LGEVRLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIR 320 (501)
T ss_pred --C---CCCcEEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCC
Confidence 0 00124899999742 489999999999999999999999999999999999999999999999998654
Q ss_pred Ch-HHHhhheEEEcCCcc---ccc-ccHHhhccCCCCCC--HHH--HHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCC
Q 001055 856 GL-MDLRKILGIIPQSPV---LFS-GTVRFNLDPFSEHS--DAD--LWEALERAHLKDAIRRNSLGLD-AQVSEAGENFS 925 (1171)
Q Consensus 856 ~~-~~~r~~i~~v~Q~~~---lf~-~tv~~nl~~~~~~~--~~~--i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~LS 925 (1171)
++ ...|+.++|+||++. +|. .|+.+|+.+..... ... .........+.++++.+ |++ ...+....+||
T Consensus 321 ~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LS 398 (501)
T PRK11288 321 SPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSL--NIKTPSREQLIMNLS 398 (501)
T ss_pred CHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhc--CcccCCccCccccCC
Confidence 43 345678999999973 554 69999986421100 000 00000112234555553 442 34566678899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEec
Q 001055 926 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 926 gGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
|||||||+|||||+.+|+||||||||+|||+.+.+.+++.|+++. .+.|||+||||++++.. ||++++|++|++++.|
T Consensus 399 gGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~ 478 (501)
T PRK11288 399 GGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGEL 478 (501)
T ss_pred HHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEE
Confidence 999999999999999999999999999999999999999998875 47899999999999987 9999999999999999
Q ss_pred ChhHHh
Q 001055 1004 TPEELL 1009 (1171)
Q Consensus 1004 ~~~el~ 1009 (1171)
+++++.
T Consensus 479 ~~~~~~ 484 (501)
T PRK11288 479 AREQAT 484 (501)
T ss_pred ccccCC
Confidence 887654
No 36
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1e-66 Score=658.87 Aligned_cols=530 Identities=25% Similarity=0.366 Sum_probs=402.3
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCc-hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 467 LILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGP-LF-YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHS 544 (1171)
Q Consensus 467 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~-~~-~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 544 (1171)
...+++.++..++....|.++...+|......... .. +...++++.++..++.+++.++....+.+...+++..+++|
T Consensus 150 ~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 229 (694)
T TIGR03375 150 RDVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFER 229 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555666677777777766543222111 11 22233344555677888999999999999999999999999
Q ss_pred HHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 545 ILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQS 624 (1171)
Q Consensus 545 ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 624 (1171)
++++|+.| +++++|++++|+ +|++.+.+.+...+...+..+..++..+++++++++...++.+..+++++++...+.+
T Consensus 230 ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~ 307 (694)
T TIGR03375 230 VLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQR 307 (694)
T ss_pred HhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 788999999999 7999998776655444444444444444444455544433333333333333344444
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 001055 625 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGA----NRWLAIRLEIVGGLMI 700 (1171)
Q Consensus 625 ~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~ 700 (1171)
..++..+......+...+.+.|+++|+++||+|+.++.+.+.+.+..+...+........ ..+..+...+...+++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 387 (694)
T TIGR03375 308 PLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIV 387 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555556677889999999999999999999888777776665544433332222 2222222222222222
Q ss_pred HHHHHHHHHhcCCcchhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCC
Q 001055 701 WLTATFAVVQNGSAENQEAFASTMGLLLSY---ALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRP 777 (1171)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~---~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~ 777 (1171)
+ ++.+.+.. +.. ++|.++++ ...+..++..+......++....+.+|+.++++.+++.+.. . ..
T Consensus 388 ~-~g~~~v~~-g~l--------s~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~--~-~~ 454 (694)
T TIGR03375 388 V-VGVYLISD-GEL--------TMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEG--T-RF 454 (694)
T ss_pred H-HHHHHHHc-CCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC--C-CC
Confidence 2 23333332 222 23333333 33445555666666677788899999999999877653211 1 10
Q ss_pred CCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCCh
Q 001055 778 PPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL 857 (1171)
Q Consensus 778 ~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~ 857 (1171)
....+..+.|+++||+|+|++..+++|+|+||+|+|||++||+|+||||||||+++|+|+|+|++|+|.+||+|++++++
T Consensus 455 ~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~ 534 (694)
T TIGR03375 455 LHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDP 534 (694)
T ss_pred CCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCH
Confidence 11112346799999999997655579999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhheEEEcCCcccccccHHhhccCCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001055 858 MDLRKILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 936 (1171)
Q Consensus 858 ~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 936 (1171)
.++|++|+||||+|.+|++||+|||.++.+ .++++++++++.++++++++++|.|++|.+++.|.+||||||||++|||
T Consensus 535 ~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalAR 614 (694)
T TIGR03375 535 ADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALAR 614 (694)
T ss_pred HHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999998764 6899999999999999999999999999999999999999999999999
Q ss_pred HhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhc
Q 001055 937 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 937 all~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
||+++|+|||||||||+||+++++.+++.|.+..+++|+|+||||++++..||+|++|++|++++.|+|+||++.
T Consensus 615 all~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 615 ALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 999999999999999999999999999999998889999999999999999999999999999999999999864
No 37
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.7e-69 Score=657.71 Aligned_cols=447 Identities=19% Similarity=0.292 Sum_probs=334.3
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCC--CCCccce-------------ecC
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP--VSDASAV-------------IRG 227 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~--~~g~~~~-------------~~~ 227 (1171)
|+++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|.+.. .+.
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 789999999963 5799999999999999999999999999999999999987 6775432 124
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCCC-------CHH----HHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHH
Q 001055 228 TVAYVPQVSWIF-NATVRDNILFGSAF-------EPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 295 (1171)
Q Consensus 228 ~i~~v~Q~~~l~-~~Tv~eni~~g~~~-------~~~----~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrq 295 (1171)
.|||+||++.++ ..||+||+.++... +.+ +..++++..++.+.. ......+|||||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgG~~q 148 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN----------VTRPVGDYGGGQQQ 148 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc----------ccCchhhCCHHHHH
Confidence 599999999876 57999999876321 111 222333333332110 11234689999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHH
Q 001055 296 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 374 (1171)
Q Consensus 296 Rv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 374 (1171)
||+|||||+.+|++|||||||++||+.+++++.+.+.+...+|+|+|+||||++++.. ||+|++|++|+++..|+.+++
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 9999999999999999999999999999999999877665568999999999999875 899999999998865432110
Q ss_pred hhcchHHHHHHHHhchhhhhhhccccCccccCCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhccccchHHHHH
Q 001055 375 SNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLS 454 (1171)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 454 (1171)
... . .
T Consensus 229 ~~~---------------------------------------------------------------~----------~-- 233 (500)
T TIGR02633 229 SED---------------------------------------------------------------D----------I-- 233 (500)
T ss_pred CHH---------------------------------------------------------------H----------H--
Confidence 000 0 0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 455 RYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAA 534 (1171)
Q Consensus 455 ~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 534 (1171)
T Consensus 234 -------------------------------------------------------------------------------- 233 (500)
T TIGR02633 234 -------------------------------------------------------------------------------- 233 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 535 KRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLL 614 (1171)
Q Consensus 535 ~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 614 (1171)
+.++
T Consensus 234 ---------------------------~~~~------------------------------------------------- 237 (500)
T TIGR02633 234 ---------------------------ITMM------------------------------------------------- 237 (500)
T ss_pred ---------------------------HHHH-------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 615 FYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEI 694 (1171)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1171)
.
T Consensus 238 -------~------------------------------------------------------------------------ 238 (500)
T TIGR02633 238 -------V------------------------------------------------------------------------ 238 (500)
T ss_pred -------h------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCC
Q 001055 695 VGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIES 774 (1171)
Q Consensus 695 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~ 774 (1171)
+.. ... ..+... .
T Consensus 239 ----------------~~~--------------------------------------------~~~--~~~~~~-----~ 251 (500)
T TIGR02633 239 ----------------GRE--------------------------------------------ITS--LYPHEP-----H 251 (500)
T ss_pred ----------------Ccc--------------------------------------------ccc--cccccc-----c
Confidence 000 000 000000 0
Q ss_pred CCCCCCCCCCccEEEEeeEEEeCCC-CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCceEEECCEec
Q 001055 775 NRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-ERGRILIDGFDI 852 (1171)
Q Consensus 775 ~~~~~~~~~~g~i~~~~vs~~y~~~-~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-~~G~I~i~g~~i 852 (1171)
+ +....++++|++++|+++ ..++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++
T Consensus 252 --~----~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~ 325 (500)
T TIGR02633 252 --E----IGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPV 325 (500)
T ss_pred --C----CCCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEEC
Confidence 0 001248999999999421 23699999999999999999999999999999999999996 899999999998
Q ss_pred CCCCh-HHHhhheEEEcCCc---cccc-ccHHhhccCCCC--CCH-HHHHHHHHHhcHHHHHHHccCCcch-hhhcCCCC
Q 001055 853 AKFGL-MDLRKILGIIPQSP---VLFS-GTVRFNLDPFSE--HSD-ADLWEALERAHLKDAIRRNSLGLDA-QVSEAGEN 923 (1171)
Q Consensus 853 ~~~~~-~~~r~~i~~v~Q~~---~lf~-~tv~~nl~~~~~--~~~-~~i~~~l~~~~~~~~i~~lp~gl~~-~~~~~~~~ 923 (1171)
...+. ..+|++++|+||++ .+|. .|+++|+.+... ... ..+........+.++++.+ ++.. ..+.....
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~ 403 (500)
T TIGR02633 326 DIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRL--KVKTASPFLPIGR 403 (500)
T ss_pred CCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhc--CccCCCccCcccc
Confidence 65443 45678899999996 3665 499999965210 000 0000011112344555554 4432 34566678
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEE
Q 001055 924 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 1001 (1171)
Q Consensus 924 LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~ 1001 (1171)
||||||||++|||||+.+|++|||||||++||+.+.+.+++.|+++. ++.|||+||||++++.. ||++++|++|+++.
T Consensus 404 LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~ 483 (500)
T TIGR02633 404 LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKG 483 (500)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998865 47899999999999987 99999999999998
Q ss_pred ecChhH
Q 001055 1002 YDTPEE 1007 (1171)
Q Consensus 1002 ~g~~~e 1007 (1171)
.++.++
T Consensus 484 ~~~~~~ 489 (500)
T TIGR02633 484 DFVNHA 489 (500)
T ss_pred EEcccc
Confidence 775543
No 38
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.1e-67 Score=645.09 Aligned_cols=481 Identities=22% Similarity=0.255 Sum_probs=331.6
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee-cCcEEEEecCCCCC
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-RGTVAYVPQVSWIF 239 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~-~~~i~~v~Q~~~l~ 239 (1171)
+.|+++|++++|+. ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+... +..||||+|+|.++
T Consensus 5 ~~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~ 82 (556)
T PRK11819 5 YIYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKVGYLPQEPQLD 82 (556)
T ss_pred EEEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCC
Confidence 46999999999962 3579999999999999999999999999999999999999999887543 34699999999987
Q ss_pred -cccHHHHHhcCCC-C----------------CHH----------HHHHHHHHcC-------chHHHhcCCCCCccccCC
Q 001055 240 -NATVRDNILFGSA-F----------------EPA----------RYEKAIDVTS-------LQHDLDLLPGGDVTEIGE 284 (1171)
Q Consensus 240 -~~Tv~eni~~g~~-~----------------~~~----------~~~~~~~~~~-------l~~~~~~~~~~~~~~i~~ 284 (1171)
..||.||+.++.. . ... .+.+.++.++ ....++.+.- .....
T Consensus 83 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl---~~~~~ 159 (556)
T PRK11819 83 PEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRC---PPWDA 159 (556)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCC---CcccC
Confidence 5699999987521 0 000 0000011000 0111121110 11344
Q ss_pred CCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCC
Q 001055 285 RGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEG 363 (1171)
Q Consensus 285 ~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G 363 (1171)
...+|||||||||+|||||+.+|++||||||||+||+.+.+++.+.+... +.|+|+||||++++.. ||+|++|++|
T Consensus 160 ~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~---~~tviiisHd~~~~~~~~d~i~~l~~g 236 (556)
T PRK11819 160 KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY---PGTVVAVTHDRYFLDNVAGWILELDRG 236 (556)
T ss_pred chhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC---CCeEEEEeCCHHHHHhhcCeEEEEeCC
Confidence 56789999999999999999999999999999999999999999876554 2599999999999986 7999999999
Q ss_pred EEE-EecChhHHhhcchHHHHHHHHhchhhhhhhccccCccccCCCCCCCCCCCCCCCCCccccccccccccchhhhhhh
Q 001055 364 MVK-EEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEE 442 (1171)
Q Consensus 364 ~i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (1171)
+++ +.|+++++............. .
T Consensus 237 ~i~~~~g~~~~~~~~~~~~~~~~~~-----~------------------------------------------------- 262 (556)
T PRK11819 237 RGIPWEGNYSSWLEQKAKRLAQEEK-----Q------------------------------------------------- 262 (556)
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHH-----H-------------------------------------------------
Confidence 986 778877654321100000000 0
Q ss_pred hccccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHH
Q 001055 443 RETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLAN 522 (1171)
Q Consensus 443 ~~~g~~~~~~l~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 522 (1171)
+.
T Consensus 263 -------------~~----------------------------------------------------------------- 264 (556)
T PRK11819 263 -------------EA----------------------------------------------------------------- 264 (556)
T ss_pred -------------HH-----------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 523 SYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVST 602 (1171)
Q Consensus 523 ~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (1171)
T Consensus 265 -------------------------------------------------------------------------------- 264 (556)
T PRK11819 265 -------------------------------------------------------------------------------- 264 (556)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 603 MSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNM 682 (1171)
Q Consensus 603 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1171)
+...+.++ ..+++......+ ..
T Consensus 265 ---------------------~~~~~~~~------------~~~~~~~~~~~~------------~~------------- 286 (556)
T PRK11819 265 ---------------------ARQKALKR------------ELEWVRQSPKAR------------QA------------- 286 (556)
T ss_pred ---------------------HHHHHHHH------------HHHHHHHhhhhh------------HH-------------
Confidence 00000000 000000000000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001055 683 GANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYI 762 (1171)
Q Consensus 683 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~ 762 (1171)
..+......++..+.
T Consensus 287 ----------------------------------------------------------------~~~~~~~~~~~~~~~- 301 (556)
T PRK11819 287 ----------------------------------------------------------------KSKARLARYEELLSE- 301 (556)
T ss_pred ----------------------------------------------------------------HHHHHHHHHHHhhcc-
Confidence 000000000010000
Q ss_pred cCCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC
Q 001055 763 ELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER 842 (1171)
Q Consensus 763 ~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~ 842 (1171)
.+.+.+.......+......+..++++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++
T Consensus 302 -~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~ 378 (556)
T PRK11819 302 -EYQKRNETNEIFIPPGPRLGDKVIEAENLSKSFGDR--LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDS 378 (556)
T ss_pred -cccccCCCceeecCCCCCCCCeEEEEEeEEEEECCe--eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 000000000000000000112359999999999753 69999999999999999999999999999999999999999
Q ss_pred ceEEECCEecCCCChHHHhhheEEEcCCc-cccc-ccHHhhccCCCC---C--CHHHHHHHHHHhcHHHHHHHccCCcch
Q 001055 843 GRILIDGFDIAKFGLMDLRKILGIIPQSP-VLFS-GTVRFNLDPFSE---H--SDADLWEALERAHLKDAIRRNSLGLDA 915 (1171)
Q Consensus 843 G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~-~lf~-~tv~~nl~~~~~---~--~~~~i~~~l~~~~~~~~i~~lp~gl~~ 915 (1171)
|+|.+++ + ..|||+||++ .++. .|+++|+.+... . .+.+.. .+++.+ |+..
T Consensus 379 G~i~~~~-~----------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~---------~~l~~~--~l~~ 436 (556)
T PRK11819 379 GTIKIGE-T----------VKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSR---------AYVGRF--NFKG 436 (556)
T ss_pred eEEEECC-c----------eEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHH---------HHHHhC--CCCh
Confidence 9999954 2 1599999997 5654 499999864321 1 111122 233432 4432
Q ss_pred -hhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEE
Q 001055 916 -QVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILL 993 (1171)
Q Consensus 916 -~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~v 993 (1171)
..+....+|||||||||+|||||+.+|++|||||||+|||+.+...+++.|++. .+|||+||||++++.. ||+|++
T Consensus 437 ~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vtHd~~~~~~~~d~i~~ 514 (556)
T PRK11819 437 GDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF--PGCAVVISHDRWFLDRIATHILA 514 (556)
T ss_pred hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhCCEEEE
Confidence 345667789999999999999999999999999999999999999999999985 3599999999999987 999999
Q ss_pred EeC-cEEEE-ecChhHHhhc
Q 001055 994 LDS-GRVLE-YDTPEELLSN 1011 (1171)
Q Consensus 994 l~~-G~i~~-~g~~~el~~~ 1011 (1171)
|++ |++.+ .|+++++++.
T Consensus 515 l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 515 FEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred EECCCeEEEecCCHHHHHHH
Confidence 985 88875 5888877643
No 39
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-68 Score=647.39 Aligned_cols=435 Identities=21% Similarity=0.338 Sum_probs=330.5
Q ss_pred EEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecCcEEE
Q 001055 165 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGTVAY 231 (1171)
Q Consensus 165 ~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~i~~ 231 (1171)
++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+..++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 4689999963 57999999999999999999999999999999999999999886532 1245999
Q ss_pred EecCCCCC-cccHHHHHhcCCC------CCHH----HHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHH
Q 001055 232 VPQVSWIF-NATVRDNILFGSA------FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300 (1171)
Q Consensus 232 v~Q~~~l~-~~Tv~eni~~g~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LA 300 (1171)
++|++.++ ..||+||+.++.. .+.. +..++++..++.. .......+|||||||||+||
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~qrv~lA 146 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDI-----------DPRAKVATLSVSQMQMIEIA 146 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCC-----------CccCchhhCCHHHHHHHHHH
Confidence 99999775 6799999987631 1111 1222233333221 22344578999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhcch
Q 001055 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNGE 379 (1171)
Q Consensus 301 raL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 379 (1171)
|||+.+|++|||||||++||+.+++++++.+.+....|+|+|+||||++++.. ||++++|++|++++.|+.+++...
T Consensus 147 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~-- 224 (491)
T PRK10982 147 KAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMD-- 224 (491)
T ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCHH--
Confidence 99999999999999999999999999999877765568999999999999865 899999999999887654332100
Q ss_pred HHHHHHHHhchhhhhhhccccCccccCCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhccccchHHHHHHHHHH
Q 001055 380 LFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDA 459 (1171)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~y~~~ 459 (1171)
...
T Consensus 225 ---~~~-------------------------------------------------------------------------- 227 (491)
T PRK10982 225 ---KII-------------------------------------------------------------------------- 227 (491)
T ss_pred ---HHH--------------------------------------------------------------------------
Confidence 000
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 460 LGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHD 539 (1171)
Q Consensus 460 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 539 (1171)
T Consensus 228 -------------------------------------------------------------------------------- 227 (491)
T PRK10982 228 -------------------------------------------------------------------------------- 227 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 540 AMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAY 619 (1171)
Q Consensus 540 ~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 619 (1171)
.++
T Consensus 228 -----------------------~~~------------------------------------------------------ 230 (491)
T PRK10982 228 -----------------------AMM------------------------------------------------------ 230 (491)
T ss_pred -----------------------HHH------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 620 LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLM 699 (1171)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 699 (1171)
+
T Consensus 231 --~----------------------------------------------------------------------------- 231 (491)
T PRK10982 231 --V----------------------------------------------------------------------------- 231 (491)
T ss_pred --h-----------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCC
Q 001055 700 IWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPP 779 (1171)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~ 779 (1171)
+.. . .+ ..+... . .
T Consensus 232 -----------~~~-----------------------~------------------~~-----~~~~~~-----~---~- 245 (491)
T PRK10982 232 -----------GRS-----------------------L------------------TQ-----RFPDKE-----N---K- 245 (491)
T ss_pred -----------CCC-----------------------c------------------cc-----cccccc-----C---C-
Confidence 000 0 00 000000 0 0
Q ss_pred CCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH
Q 001055 780 GWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD 859 (1171)
Q Consensus 780 ~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~ 859 (1171)
+.+..|+++|++++| +++|+|+||+|++||++||+||||||||||+++|+|+.+|++|+|.++|.++...++..
T Consensus 246 --~~~~~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 319 (491)
T PRK10982 246 --PGEVILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANE 319 (491)
T ss_pred --CCCcEEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHH
Confidence 011248999999975 25999999999999999999999999999999999999999999999999997766543
Q ss_pred -HhhheEEEcCCcc---ccc-ccHHhh-----ccCCCC----CCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCC
Q 001055 860 -LRKILGIIPQSPV---LFS-GTVRFN-----LDPFSE----HSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENF 924 (1171)
Q Consensus 860 -~r~~i~~v~Q~~~---lf~-~tv~~n-----l~~~~~----~~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~L 924 (1171)
+++.++|+||++. +|. .|+.+| +..+.. ....+. ...+.++++.+ ++. ...+....+|
T Consensus 320 ~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~L 392 (491)
T PRK10982 320 AINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRM-----KSDTQWVIDSM--RVKTPGHRTQIGSL 392 (491)
T ss_pred HHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHH-----HHHHHHHHHhc--CccCCCcccccccC
Confidence 4667999999963 554 377665 321111 011111 12234455554 332 2346677889
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEe
Q 001055 925 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEY 1002 (1171)
Q Consensus 925 SgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~ 1002 (1171)
||||||||+||||++.+|+||||||||+|||+.+.+.+++.|+++. +++|||+||||++++.. |||+++|++|+++..
T Consensus 393 SgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~ 472 (491)
T PRK10982 393 SGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGI 472 (491)
T ss_pred CcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998865 47999999999999987 999999999999988
Q ss_pred cChhH
Q 001055 1003 DTPEE 1007 (1171)
Q Consensus 1003 g~~~e 1007 (1171)
+++++
T Consensus 473 ~~~~~ 477 (491)
T PRK10982 473 VDTKT 477 (491)
T ss_pred Ecccc
Confidence 76643
No 40
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2.5e-65 Score=645.61 Aligned_cols=539 Identities=23% Similarity=0.338 Sum_probs=406.4
Q ss_pred HHHHHHHHHHHHHHhHHhhhhhhccccccCCC-Cch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 468 ILLLCYFLTETLRVSSSTWLSYWTDQSSLKTH-GPL-FYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSI 545 (1171)
Q Consensus 468 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~-~~~-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 545 (1171)
.++++.++...+....|.++...+|....... ... .+...+.++.++..++.+++.++....+.+...+++..+++++
T Consensus 143 ~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l 222 (694)
T TIGR01846 143 EVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHL 222 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555556666777666665432211 111 2223344455567788899999999999999999999999999
Q ss_pred HcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 546 LRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQST 625 (1171)
Q Consensus 546 l~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~ 625 (1171)
+++|+.||+++++|++++|+ +|++.+.+.+...+...+..+...+..+++++++.+...++++..+++++.+.....+.
T Consensus 223 ~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~ 301 (694)
T TIGR01846 223 LGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPI 301 (694)
T ss_pred HcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 69999887665544444444444443444444555544443333333333333333333
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q 001055 626 AREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIV---GGLMIWL 702 (1171)
Q Consensus 626 ~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~ 702 (1171)
.++..+......+...+.+.|+++|+++||+++.++.+.+.+.+..+...+..........+......++ ..+++++
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~ 381 (694)
T TIGR01846 302 LRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLW 381 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3333333444556778899999999999999999998888777766655544443333333333322222 2222222
Q ss_pred HHHHHHHhcCCcchhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCC
Q 001055 703 TATFAVVQNGSAENQEAFASTMGLLLS---YALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPP 779 (1171)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~g~~l~---~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~ 779 (1171)
++.+.+.. +.. ++|.+++ +...+..++..+.......+....+.+|+.++++.+++.+.. ....
T Consensus 382 ~g~~lv~~-g~i--------t~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~--~~~~-- 448 (694)
T TIGR01846 382 FGAHLVIG-GAL--------SPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA--GLAA-- 448 (694)
T ss_pred HHHHHHHc-CCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC--CCCC--
Confidence 23333332 222 2333333 333455556666666777888899999999999877653211 1001
Q ss_pred CCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH
Q 001055 780 GWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD 859 (1171)
Q Consensus 780 ~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~ 859 (1171)
.....+.|+++||+|+|+++.+++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.+||+|+++++..+
T Consensus 449 ~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~ 528 (694)
T TIGR01846 449 LPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAW 528 (694)
T ss_pred CCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHH
Confidence 11224679999999999765457999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhheEEEcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 860 LRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 860 ~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
+|++|+||||++.+|++|++|||.+.. +.++++++++++.++++++++++|.|++|.+++.|.+||||||||++|||||
T Consensus 529 ~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARal 608 (694)
T TIGR01846 529 LRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARAL 608 (694)
T ss_pred HHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999998764 4688999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHH
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1018 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~ 1018 (1171)
+++|+|||||||||+||+++++.+.+.|++..+++|+|+||||++++..||+|++|++|+|++.|+|+++++.. +.|.+
T Consensus 609 l~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~-~~y~~ 687 (694)
T TIGR01846 609 VGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQ-GLYAR 687 (694)
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcC-ChHHH
Confidence 99999999999999999999999999999987889999999999999999999999999999999999999864 67887
Q ss_pred HHH
Q 001055 1019 MVQ 1021 (1171)
Q Consensus 1019 ~~~ 1021 (1171)
++.
T Consensus 688 l~~ 690 (694)
T TIGR01846 688 LWQ 690 (694)
T ss_pred HHH
Confidence 765
No 41
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=4.1e-65 Score=632.61 Aligned_cols=543 Identities=24% Similarity=0.367 Sum_probs=420.0
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCc-hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 466 VLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGP-LF-YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLH 543 (1171)
Q Consensus 466 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~-~~-~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 543 (1171)
+++.+++.++...+....+.++....+......... .. +..++.++.+...++.+++.++....+.+....+++.+++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~ 95 (571)
T TIGR02203 16 LVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFE 95 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555566666655554322211111 11 2234555666677888889999999999999999999999
Q ss_pred HHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 544 SILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQ 623 (1171)
Q Consensus 544 ~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 623 (1171)
++++.|..+|++.+.|++++|+++|++.++..+...+..++..++.++..++++++..+...++++.++++.+.....+.
T Consensus 96 ~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~ 175 (571)
T TIGR02203 96 KLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVS 175 (571)
T ss_pred HHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988877777777777777777666666666655555555555454555555
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Q 001055 624 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVG---GLMI 700 (1171)
Q Consensus 624 ~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~ 700 (1171)
+..++..+......++..+.+.|.++|+.++|+++.++++.+.+.+..+...+..........+......++. .+++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (571)
T TIGR02203 176 KRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVV 255 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555666666778889999999999999999999988877777666655544433333333333222222 2222
Q ss_pred HHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCC
Q 001055 701 WLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPG 780 (1171)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~ 780 (1171)
++++.+.+.. +..+ .+.+..++.+...+..++..+............+.+|+.++++.+++.+.. ..+.
T Consensus 256 ~~~g~~~~~~-g~lt-----~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~---~~~~-- 324 (571)
T TIGR02203 256 LFIALFQAQA-GSLT-----AGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG---TRAI-- 324 (571)
T ss_pred HHHHHHHHHc-CCCC-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---CCCC--
Confidence 2223333322 2221 122222333444455666666667777888899999999998765543211 1111
Q ss_pred CCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH
Q 001055 781 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL 860 (1171)
Q Consensus 781 ~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~ 860 (1171)
.+..+.|+++||+|+|++..+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||+++++++.+++
T Consensus 325 ~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~ 404 (571)
T TIGR02203 325 ERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASL 404 (571)
T ss_pred CCCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHH
Confidence 12345699999999997644579999999999999999999999999999999999999999999999999999999999
Q ss_pred hhheEEEcCCcccccccHHhhccCCC--CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 861 RKILGIIPQSPVLFSGTVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 861 r~~i~~v~Q~~~lf~~tv~~nl~~~~--~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
|++|+||||+|.+|++|+++||.++. +.++++++++++.+++++++.++|.|+||.+++.|.+||||||||++||||+
T Consensus 405 ~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARal 484 (571)
T TIGR02203 405 RRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARAL 484 (571)
T ss_pred HhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999775 4789999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHH
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1018 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~ 1018 (1171)
+++|+|||||||||+||+++++.+.+.|++..+++|+|+||||.+.+..||+|++|++|++++.|+|++++++. +.|.+
T Consensus 485 l~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~-~~~~~ 563 (571)
T TIGR02203 485 LKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARN-GLYAQ 563 (571)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcC-CHHHH
Confidence 99999999999999999999999999999988899999999999999999999999999999999999998764 45554
Q ss_pred HH
Q 001055 1019 MV 1020 (1171)
Q Consensus 1019 ~~ 1020 (1171)
++
T Consensus 564 ~~ 565 (571)
T TIGR02203 564 LH 565 (571)
T ss_pred HH
Confidence 43
No 42
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-66 Score=586.07 Aligned_cols=533 Identities=24% Similarity=0.321 Sum_probs=385.7
Q ss_pred HHHHHHhHHhhhhhhccccccCC------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 001055 476 TETLRVSSSTWLSYWTDQSSLKT------HGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAP 549 (1171)
Q Consensus 476 ~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p 549 (1171)
...+....|..+...+|...... ..+.-....|.+..++..++..++..++....+++-++...+.|.+++.+.
T Consensus 42 aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld 121 (591)
T KOG0057|consen 42 AKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLD 121 (591)
T ss_pred hhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34555555555554444322111 112234556777888899999999999999999999999999999999999
Q ss_pred ccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 001055 550 MVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTA-RE 628 (1171)
Q Consensus 550 ~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~-~~ 628 (1171)
+.+|.+..+|.+.+.+..-...+...+...+..++..++.+......+.+-......++....+..|.++..+.... .+
T Consensus 122 ~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~ 201 (591)
T KOG0057|consen 122 LSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNR 201 (591)
T ss_pred HHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHH
Confidence 99999999999988887777777666666666666665555444433333322222222223333444443322221 22
Q ss_pred HHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 629 VKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAV 708 (1171)
Q Consensus 629 ~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 708 (1171)
.++....+.........+.+.+..+||+|+.|++..+++...+....+...........+.+....+..+....+..+..
T Consensus 202 fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~ 281 (591)
T KOG0057|consen 202 FRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGS 281 (591)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333334445567788999999999999999999999988888777776665544444444444443222222111111
Q ss_pred HhcCCcchhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCCCc
Q 001055 709 VQNGSAENQEAFASTMGLLLSY---ALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSG 785 (1171)
Q Consensus 709 ~~~~~~~~~~~~~~~~g~~l~~---~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~g 785 (1171)
. +.. .-..+.|-++.+ ...+..++..+...+......+..+..+.... +.+ ....+. +.+....++
T Consensus 282 ~--gi~----~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~--~~~-~~i~~~--~~~i~~~~~ 350 (591)
T KOG0057|consen 282 N--GIA----AGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILL--EVD-EDIQEA--ALPIELFGG 350 (591)
T ss_pred h--hhh----hccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhh--hhh-hhhhhc--cCCcccCCC
Confidence 0 000 001122222222 22222223222222222222222222221111 111 000111 112223456
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.|+|+||+|.|+++ +++|+++||+|++||+|||+|+|||||||++++|+|+++ ++|+|+|||+|+++++++.+|+.||
T Consensus 351 ~I~F~dV~f~y~~k-~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig 428 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPK-RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIG 428 (591)
T ss_pred cEEEEeeEEEeCCC-CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhhee
Confidence 79999999999876 469999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred EEcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001055 866 IIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 944 (1171)
Q Consensus 866 ~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 944 (1171)
|||||..||++||.+||.+++ ..+++++.+++++++++|.+.++|+||+|.++++|..|||||||||+||||++++|+|
T Consensus 429 ~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~I 508 (591)
T KOG0057|consen 429 VVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPI 508 (591)
T ss_pred EeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCe
Confidence 999999999999999998765 4689999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHh
Q 001055 945 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1022 (1171)
Q Consensus 945 LlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~ 1022 (1171)
+++|||||+||.+||+.+.+.+.+...++|+|+|.||++++++||+|+++++|++.++|+|+||++ ..+.|..++..
T Consensus 509 l~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~~ 585 (591)
T KOG0057|consen 509 LLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWTT 585 (591)
T ss_pred EEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhcc
Confidence 999999999999999999999999888999999999999999999999999999999999999998 56667666543
No 43
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=4.5e-68 Score=645.37 Aligned_cols=442 Identities=25% Similarity=0.352 Sum_probs=332.3
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee------------cCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------RGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~------------~~~i 229 (1171)
.|+++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+... +..+
T Consensus 3 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 4899999999963 469999999999999999999999999999999999999998865321 1248
Q ss_pred EEEecCCCC--C-------cccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHH
Q 001055 230 AYVPQVSWI--F-------NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300 (1171)
Q Consensus 230 ~~v~Q~~~l--~-------~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LA 300 (1171)
+|++|++.+ + ..||++|+.++. ...++..+.++..++.+..+. ...+|||||||||+||
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la 147 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEV-KDPARCEQLAQQFGITALLDR-----------RFKYLSTGETRKTLLC 147 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccch-hHHHHHHHHHHHcCCHhhhhC-----------CcccCCHHHHHHHHHH
Confidence 999998643 1 458999987542 123455666777776554433 3358999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhcch
Q 001055 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNGE 379 (1171)
Q Consensus 301 raL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 379 (1171)
|||+.+|++|||||||++||+.+++++.+.+.+...+|+|+|+|||+++++.. ||++++|++|+++..|+++++.....
T Consensus 148 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~ 227 (490)
T PRK10938 148 QALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQAL 227 (490)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcchh
Confidence 99999999999999999999999999999887765568999999999999875 79999999999998877655421100
Q ss_pred HHHHHHHHhchhhhhhhccccCccccCCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhccccchHHHHHHHHHH
Q 001055 380 LFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDA 459 (1171)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~y~~~ 459 (1171)
...+..
T Consensus 228 -~~~~~~------------------------------------------------------------------------- 233 (490)
T PRK10938 228 -VAQLAH------------------------------------------------------------------------- 233 (490)
T ss_pred -hhhhhh-------------------------------------------------------------------------
Confidence 000000
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 460 LGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHD 539 (1171)
Q Consensus 460 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 539 (1171)
T Consensus 234 -------------------------------------------------------------------------------- 233 (490)
T PRK10938 234 -------------------------------------------------------------------------------- 233 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 540 AMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAY 619 (1171)
Q Consensus 540 ~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 619 (1171)
T Consensus 234 -------------------------------------------------------------------------------- 233 (490)
T PRK10938 234 -------------------------------------------------------------------------------- 233 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 620 LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLM 699 (1171)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 699 (1171)
.+ .+.
T Consensus 234 ------~~-------------------~~~-------------------------------------------------- 238 (490)
T PRK10938 234 ------SE-------------------QLE-------------------------------------------------- 238 (490)
T ss_pred ------hh-------------------ccC--------------------------------------------------
Confidence 00 000
Q ss_pred HHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-CCcccCCCCCC
Q 001055 700 IWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSE-APLVIESNRPP 778 (1171)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e-~~~~~~~~~~~ 778 (1171)
. ...+.. .+.. ... ..
T Consensus 239 ------------------------------------------------------------~-~~~~~~~~~~~-~~~-~~ 255 (490)
T PRK10938 239 ------------------------------------------------------------G-VQLPEPDEPSA-RHA-LP 255 (490)
T ss_pred ------------------------------------------------------------c-cccCccccccc-ccc-cC
Confidence 0 000000 0000 000 00
Q ss_pred CCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCceEEECCEecCC-CC
Q 001055 779 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-ERGRILIDGFDIAK-FG 856 (1171)
Q Consensus 779 ~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-~~G~I~i~g~~i~~-~~ 856 (1171)
.....++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+.+| ++|+|.++|.++.. ..
T Consensus 256 ---~~~~~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~ 330 (490)
T PRK10938 256 ---ANEPRIVLNNGVVSYNDR--PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGET 330 (490)
T ss_pred ---CCCceEEEeceEEEECCe--eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCC
Confidence 011249999999999753 699999999999999999999999999999999998876 69999999987632 23
Q ss_pred hHHHhhheEEEcCCccccc---ccHHhhccC--CC------CCCHHHHHHHHHHhcHHHHHHHccCCcch-hhhcCCCCC
Q 001055 857 LMDLRKILGIIPQSPVLFS---GTVRFNLDP--FS------EHSDADLWEALERAHLKDAIRRNSLGLDA-QVSEAGENF 924 (1171)
Q Consensus 857 ~~~~r~~i~~v~Q~~~lf~---~tv~~nl~~--~~------~~~~~~i~~~l~~~~~~~~i~~lp~gl~~-~~~~~~~~L 924 (1171)
....|++|+|+||++.++. .|+++++.. .. ..... . ...+.+.++. .|++. ..+....+|
T Consensus 331 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~l~~--~~l~~~~~~~~~~~L 402 (490)
T PRK10938 331 IWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDR-Q-----QKLAQQWLDI--LGIDKRTADAPFHSL 402 (490)
T ss_pred HHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHH-H-----HHHHHHHHHH--cCCchhhccCchhhC
Confidence 3346778999999986542 367766532 11 01111 0 1112334444 25554 456666789
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-C-cEEEEEecChhhhhh--cCEEEEEeCcEEE
Q 001055 925 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-S-CTMLIIAHRLNTIID--CDRILLLDSGRVL 1000 (1171)
Q Consensus 925 SgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~-~tvi~vtH~~~~~~~--~d~i~vl~~G~i~ 1000 (1171)
||||||||+|||||+.+|+||||||||+|||+.+.+.+.+.|+++.+ + .|||+||||++++.. ||++++|++|+|+
T Consensus 403 SgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~ 482 (490)
T PRK10938 403 SWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIY 482 (490)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceE
Confidence 99999999999999999999999999999999999999999998754 4 479999999999974 8999999999998
Q ss_pred Eec
Q 001055 1001 EYD 1003 (1171)
Q Consensus 1001 ~~g 1003 (1171)
+.-
T Consensus 483 ~~~ 485 (490)
T PRK10938 483 RYV 485 (490)
T ss_pred Eee
Confidence 753
No 44
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=9.1e-67 Score=641.02 Aligned_cols=480 Identities=22% Similarity=0.265 Sum_probs=331.7
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee-cCcEEEEecCCCCC-
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-RGTVAYVPQVSWIF- 239 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~-~~~i~~v~Q~~~l~- 239 (1171)
.|+++|++++|+. ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+... +..|||++|+|+++
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~ 81 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDP 81 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCC
Confidence 6899999999962 3579999999999999999999999999999999999999999876543 34699999999987
Q ss_pred cccHHHHHhcCCCC------------------CH---------HHHHHHHHHcCchH-------HHhcCCCCCccccCCC
Q 001055 240 NATVRDNILFGSAF------------------EP---------ARYEKAIDVTSLQH-------DLDLLPGGDVTEIGER 285 (1171)
Q Consensus 240 ~~Tv~eni~~g~~~------------------~~---------~~~~~~~~~~~l~~-------~~~~~~~~~~~~i~~~ 285 (1171)
+.||+|||.++... .. .++.++++.++... .++.+. ....+..
T Consensus 82 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---l~~~~~~ 158 (552)
T TIGR03719 82 TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALR---CPPWDAD 158 (552)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCC---CCcccCc
Confidence 57999999875210 00 11222333333221 122211 1113455
Q ss_pred CCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCE
Q 001055 286 GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGM 364 (1171)
Q Consensus 286 g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~ 364 (1171)
..+|||||||||+|||||+.+|++|||||||++||+.+..++.+.+.+. +.|+|+||||++++.. ||++++|++|+
T Consensus 159 ~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~~~~~~~~d~v~~l~~g~ 235 (552)
T TIGR03719 159 VTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDRYFLDNVAGWILELDRGR 235 (552)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCHHHHHhhcCeEEEEECCE
Confidence 6799999999999999999999999999999999999999999876543 3699999999999986 79999999999
Q ss_pred EE-EecChhHHhhcchHHHHHHHHhchhhhhhhccccCccccCCCCCCCCCCCCCCCCCccccccccccccchhhhhhhh
Q 001055 365 VK-EEGTFEDLSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEER 443 (1171)
Q Consensus 365 i~-~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (1171)
++ +.|+++++............
T Consensus 236 i~~~~g~~~~~~~~~~~~~~~~~--------------------------------------------------------- 258 (552)
T TIGR03719 236 GIPWEGNYSSWLEQKEKRLEQEE--------------------------------------------------------- 258 (552)
T ss_pred EEEecCCHHHHHHHHHHHHHHHH---------------------------------------------------------
Confidence 75 67888766432100000000
Q ss_pred ccccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 001055 444 ETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANS 523 (1171)
Q Consensus 444 ~~g~~~~~~l~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 523 (1171)
..+.
T Consensus 259 ----------~~~~------------------------------------------------------------------ 262 (552)
T TIGR03719 259 ----------KEES------------------------------------------------------------------ 262 (552)
T ss_pred ----------HHHH------------------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 524 YWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTM 603 (1171)
Q Consensus 524 ~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (1171)
T Consensus 263 -------------------------------------------------------------------------------- 262 (552)
T TIGR03719 263 -------------------------------------------------------------------------------- 262 (552)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 604 SLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMG 683 (1171)
Q Consensus 604 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1171)
+..++.++. .+++..... .... ..
T Consensus 263 --------------------~~~~~~~~~------------~~~~~~~~~----~~~~----~~---------------- 286 (552)
T TIGR03719 263 --------------------ARQKALKRE------------LEWVRSSPK----ARQA----KS---------------- 286 (552)
T ss_pred --------------------HHHHHHHHH------------HHHHHhhhh----hHHH----HH----------------
Confidence 000000000 000000000 0000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 001055 684 ANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIE 763 (1171)
Q Consensus 684 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~ 763 (1171)
.......++..+ .
T Consensus 287 -----------------------------------------------------------------~~~~~~~~~~~~--~ 299 (552)
T TIGR03719 287 -----------------------------------------------------------------KARLARYEELLS--Q 299 (552)
T ss_pred -----------------------------------------------------------------HHHHHHHHhhhh--h
Confidence 000000000000 0
Q ss_pred CCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc
Q 001055 764 LPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 843 (1171)
Q Consensus 764 ~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G 843 (1171)
.+...+.......+......+..++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G 377 (552)
T TIGR03719 300 EFQKRNETAEIYIPPGPRLGDKVIEAENLSKGFGDK--LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSG 377 (552)
T ss_pred cccccCCCceeecCCCCCCCCeEEEEeeEEEEECCe--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCe
Confidence 000000000000000000112359999999999753 699999999999999999999999999999999999999999
Q ss_pred eEEECCEecCCCChHHHhhheEEEcCCcc-ccc-ccHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcch-hh
Q 001055 844 RILIDGFDIAKFGLMDLRKILGIIPQSPV-LFS-GTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDA-QV 917 (1171)
Q Consensus 844 ~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-lf~-~tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~-~~ 917 (1171)
+|.+++ + ..|||+||++. ++. .|+.+|+.+... ....+. ...++++.+ |+.. ..
T Consensus 378 ~i~~~~-~----------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~-------~~~~~l~~~--~l~~~~~ 437 (552)
T TIGR03719 378 TIKIGE-T----------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREV-------PSRAYVGRF--NFKGSDQ 437 (552)
T ss_pred EEEECC-c----------eEEEEEeCCccccCCCCcHHHHHHhhccccccCcchH-------HHHHHHHhC--CCChhHh
Confidence 999954 2 15999999973 554 499999965321 111110 112334443 4433 34
Q ss_pred hcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeC
Q 001055 918 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDS 996 (1171)
Q Consensus 918 ~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~ 996 (1171)
+....+|||||||||+|||||+.+|++|||||||++||+.+...+++.|+++ ++|||+||||++++.. ||+|++|++
T Consensus 438 ~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~~viivsHd~~~~~~~~d~i~~l~~ 515 (552)
T TIGR03719 438 QKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF--AGCAVVISHDRWFLDRIATHILAFEG 515 (552)
T ss_pred cCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHhCCEEEEEEC
Confidence 5666789999999999999999999999999999999999999999999986 3589999999999987 999999996
Q ss_pred -cEEEEe-cChhHHh
Q 001055 997 -GRVLEY-DTPEELL 1009 (1171)
Q Consensus 997 -G~i~~~-g~~~el~ 1009 (1171)
|++... |+++++.
T Consensus 516 ~~~~~~~~g~~~~~~ 530 (552)
T TIGR03719 516 DSHVEWFEGNYSEYE 530 (552)
T ss_pred CCeEEEeCCCHHHHH
Confidence 688744 7776664
No 45
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=7.8e-67 Score=649.86 Aligned_cols=203 Identities=21% Similarity=0.325 Sum_probs=166.6
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.|+++||+++|++. ++|+|+||+|.+|+++||+||||||||||+++|+|+++|++|+|.+ |.++ .||
T Consensus 319 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~ 385 (635)
T PRK11147 319 VFEMENVNYQIDGK--QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVA 385 (635)
T ss_pred eEEEeeeEEEECCe--EEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEE
Confidence 49999999999753 6999999999999999999999999999999999999999999998 4322 599
Q ss_pred EEcCCc-ccccc-cHHhhccCCCC-CCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHHHHHHhccC
Q 001055 866 IIPQSP-VLFSG-TVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 866 ~v~Q~~-~lf~~-tv~~nl~~~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~LSgGqkqrl~lArall~~ 941 (1171)
|++|++ .++.. ||.+|+..... ...... ...+.+++..+ ++. .........|||||||||+|||||+.+
T Consensus 386 y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGekqRl~la~al~~~ 458 (635)
T PRK11147 386 YFDQHRAELDPEKTVMDNLAEGKQEVMVNGR-----PRHVLGYLQDF--LFHPKRAMTPVKALSGGERNRLLLARLFLKP 458 (635)
T ss_pred EEeCcccccCCCCCHHHHHHhhcccccccch-----HHHHHHHHHhc--CCCHHHHhChhhhCCHHHHHHHHHHHHHhcC
Confidence 999986 46544 99999864321 100000 01123344442 332 234556678999999999999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEe-CcEEEEe-cChhHHhh
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLD-SGRVLEY-DTPEELLS 1010 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~-~G~i~~~-g~~~el~~ 1010 (1171)
|++|||||||++||+.+...+.+.|++. ++|||+||||++++.. ||+|++|+ +|++..+ |++++++.
T Consensus 459 p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 459 SNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 9999999999999999999999999884 6799999999999987 99999998 8999887 99999864
No 46
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=8.6e-65 Score=630.09 Aligned_cols=545 Identities=22% Similarity=0.299 Sum_probs=390.7
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 466 VLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSI 545 (1171)
Q Consensus 466 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 545 (1171)
+.+++++.++...+....+.++....|..... .....+..++.++.+...+..++..+.......+...+++..+++++
T Consensus 21 ~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 99 (588)
T PRK13657 21 GILLAVANVLLAAATFAEPILFGRIIDAISGK-GDIFPLLAAWAGFGLFNIIAGVLVARHADRLAHRRRLAVLTEYFERI 99 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555566666677776666543221 11111122222223333333334444444445555556677999999
Q ss_pred HcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 546 LRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQST 625 (1171)
Q Consensus 546 l~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~ 625 (1171)
+++|..+|.+.+.|++++|+++|++.+...+...+..++..++..+..+++++++.+...++++.++++++.+...+.+.
T Consensus 100 ~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~ 179 (588)
T PRK13657 100 IQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRK 179 (588)
T ss_pred HhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998876555555454444444444444444445444333333333333444444555
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 001055 626 AREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEI---VGGLMIWL 702 (1171)
Q Consensus 626 ~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~ 702 (1171)
.++..+......+.+.+.+.|.++|++++|+|+.++.+.+.+.+..+...+..........+......+ +..+++++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (588)
T PRK13657 180 TKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILV 259 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555566788889999999999999999999887777766665554433322222222222222 22222333
Q ss_pred HHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCC
Q 001055 703 TATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWP 782 (1171)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~ 782 (1171)
.+.+.+.. +..+. ..+..++.+...+..++..+............+.+|+.++.+.+++.+.. ..... ..+
T Consensus 260 ~g~~~v~~-g~lt~-----g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~--~~~~~-~~~ 330 (588)
T PRK13657 260 LGAALVQK-GQLRV-----GEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP--PGAID-LGR 330 (588)
T ss_pred HHHHHHHc-CCcCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC--CCCCC-cCC
Confidence 33333332 22221 11112222333344444555555555666777888888877654332111 01000 011
Q ss_pred CCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhh
Q 001055 783 SSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 862 (1171)
Q Consensus 783 ~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 862 (1171)
..+.|+++||+|+|+++ +++|+|+||+++|||++||+|+||||||||+++|+|+++|++|+|.+||.++.+++..++|+
T Consensus 331 ~~~~I~~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 409 (588)
T PRK13657 331 VKGAVEFDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRR 409 (588)
T ss_pred CCCeEEEEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHh
Confidence 23469999999999753 46999999999999999999999999999999999999999999999999999999999999
Q ss_pred heEEEcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001055 863 ILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 863 ~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 941 (1171)
+|+||||+|.+|++|+++||.++. +.++++++++++.+++++++.++|.|+||.++++|.+||||||||++|||||+++
T Consensus 410 ~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~ 489 (588)
T PRK13657 410 NIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKD 489 (588)
T ss_pred heEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999998764 4688999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHHHH
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1021 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~ 1021 (1171)
|+|||||||||+||+++++.+++.|++..+++|+|+||||++.++.||+|++|++|++++.|+|+++++. .+.|.+++.
T Consensus 490 ~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~-~~~y~~l~~ 568 (588)
T PRK13657 490 PPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVAR-GGRFAALLR 568 (588)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHC-CChHHHHHH
Confidence 9999999999999999999999999998778999999999999999999999999999999999999976 467777665
Q ss_pred h
Q 001055 1022 S 1022 (1171)
Q Consensus 1022 ~ 1022 (1171)
.
T Consensus 569 ~ 569 (588)
T PRK13657 569 A 569 (588)
T ss_pred H
Confidence 3
No 47
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-67 Score=579.95 Aligned_cols=500 Identities=23% Similarity=0.386 Sum_probs=378.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 001055 515 QVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTF 594 (1171)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~ 594 (1171)
..++.-+++++.....++..+.+..++|+|+..+++.|+-.+..|+++.-+......+. .+...+.++...+..+..++
T Consensus 272 sG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~ 350 (790)
T KOG0056|consen 272 SGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAM 350 (790)
T ss_pred ccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhh
Confidence 35667788888889999999999999999999999999999999998877766555443 22233333333333333333
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHH
Q 001055 595 VLIGI-VSTMSLWAIMPLLLLFYAAY-LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMD 672 (1171)
Q Consensus 595 ~~~~~-~~~~~~~~~~~ll~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~ 672 (1171)
+..++ ...+..++++..+. .|+.. .....-.-+.+|....+-..-.+.-.+++-+.+|+|-|+++++..+.+.+...
T Consensus 351 vYF~~~Fn~wFgLIVfl~m~-lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil 429 (790)
T KOG0056|consen 351 VYFFIKFNIWFGLIVFLMML-LYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAIL 429 (790)
T ss_pred hhhhhhHhHHHHHHHHHHHH-HHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHH
Confidence 22221 11222222211111 12111 11111111112221112222234557889999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 673 KNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSL 752 (1171)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 752 (1171)
+.++.....+..-..+....+.+.++....+..+.+. ..+.+....+-.-++.+|.+.+..++..+...+..+++.+
T Consensus 430 ~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY---~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nf 506 (790)
T KOG0056|consen 430 KYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAY---RVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNF 506 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeee---eeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhh
Confidence 8887665554333333333333333222222221111 0000100111223455666677777788888888899999
Q ss_pred HHHHHHHhhhcCCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHH
Q 001055 753 NAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLN 832 (1171)
Q Consensus 753 ~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~ 832 (1171)
..+|++.++++.++| ..+....++-....|.|+|+||+|.|+++ +|+|+||||+++||+.+|+|||||+||||+++
T Consensus 507 iDmEnmfdllkee~e---Vvd~P~a~pl~~~~G~i~fsnvtF~Y~p~-k~vl~disF~v~pGktvAlVG~SGaGKSTimR 582 (790)
T KOG0056|consen 507 IDMENMFDLLKEEPE---VVDLPGAPPLKVTQGKIEFSNVTFAYDPG-KPVLSDISFTVQPGKTVALVGPSGAGKSTIMR 582 (790)
T ss_pred hhHHHHHHHhhcCch---hhcCCCCCCccccCCeEEEEEeEEecCCC-CceeecceEEecCCcEEEEECCCCCchhHHHH
Confidence 999999988864443 22222222323356889999999999876 48999999999999999999999999999999
Q ss_pred HHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccC
Q 001055 833 TLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSL 911 (1171)
Q Consensus 833 ~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~ 911 (1171)
+|.|+++.++|.|.|||+||++...+++|++||+||||..||+.||..||.+.. .++++++.+|++.+++++-|..+|+
T Consensus 583 lLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPe 662 (790)
T KOG0056|consen 583 LLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPE 662 (790)
T ss_pred HHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCch
Confidence 999999999999999999999999999999999999999999999999998765 4689999999999999999999999
Q ss_pred CcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEE
Q 001055 912 GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRI 991 (1171)
Q Consensus 912 gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i 991 (1171)
||+|.++|+|-.|||||||||++||+++++|.|++|||+||+||..|++.|+.+|.+...++|.|+|+||++++.+||.|
T Consensus 663 gY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~I 742 (790)
T KOG0056|consen 663 GYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLI 742 (790)
T ss_pred hhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcEEEEecChhHHhhcCCChHHHHHHhh
Q 001055 992 LLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 1023 (1171)
Q Consensus 992 ~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~ 1023 (1171)
+|+++|+|+|.|+|+||+++.++.|.+|++.+
T Consensus 743 Lvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~q 774 (790)
T KOG0056|consen 743 LVISNGRIVERGRHEELLKRDGGAYADMWQAQ 774 (790)
T ss_pred EEEeCCeEeecCcHHHHHhccCCcHHHHHHHH
Confidence 99999999999999999999999999999743
No 48
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1.7e-63 Score=615.53 Aligned_cols=546 Identities=20% Similarity=0.265 Sum_probs=393.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 465 VVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHS 544 (1171)
Q Consensus 465 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 544 (1171)
.+++.+++.++...+....|+.++..+|...... ....+..+++++.+...+..++..++......+...+++.++|++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ 98 (585)
T TIGR01192 20 RVLLIVIANITLAAITIAEPILFGRIIDAISSKS-DVLPTLALWAGFGVFNTIAYVLVAREADRLAHGRRATLLTEAFGR 98 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666666667777766666432211 111111222222233333444444445555556666777899999
Q ss_pred HHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 545 ILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQS 624 (1171)
Q Consensus 545 ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 624 (1171)
++++|+.||+++++|++++|+++|++.+...+...+...+..++.++..++.++.+.+...++++.++++++.+...+.+
T Consensus 99 l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~ 178 (585)
T TIGR01192 99 IISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQ 178 (585)
T ss_pred HHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998766666655555555555444444455544444333333333333444444
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 001055 625 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRL---EIVGGLMIW 701 (1171)
Q Consensus 625 ~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~ 701 (1171)
..++..+......+.+.+.+.|.++|+++||+|+.++...+.+.+..+...+..........+..... ..+..++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 258 (585)
T TIGR01192 179 RTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCIL 258 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555667788999999999999999999888777776665544333322221111111111 111222222
Q ss_pred HHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCC
Q 001055 702 LTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGW 781 (1171)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~ 781 (1171)
+++.+.+.. +..+. +.+..++.+...+..++..+............+.+|+.++.+.+++... ...+....
T Consensus 259 ~~g~~~v~~-g~it~-----g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~---~~~~~~~~ 329 (585)
T TIGR01192 259 VIGTVLVIK-GELSV-----GEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREE---PADAPELP 329 (585)
T ss_pred HHHHHHHHc-CCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC---CccCCCCC
Confidence 233333322 22211 1112222333344445555555666667778889999888765443211 11100111
Q ss_pred CCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHh
Q 001055 782 PSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 861 (1171)
Q Consensus 782 ~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r 861 (1171)
+..+.++++||+|+|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.++++..+|
T Consensus 330 ~~~~~i~~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~ 408 (585)
T TIGR01192 330 NVKGAVEFRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLR 408 (585)
T ss_pred CCCCeEEEEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHH
Confidence 123569999999999754 3689999999999999999999999999999999999999999999999999999999999
Q ss_pred hheEEEcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 862 KILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 862 ~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
+.++||||+|.+|++|+++||.++. +.++++++++++.+++++++.++|.|++|.+++.+.+|||||||||+|||||++
T Consensus 409 ~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~ 488 (585)
T TIGR01192 409 KSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILK 488 (585)
T ss_pred hheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999998764 457889999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHHH
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 1020 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~ 1020 (1171)
+|++||||||||+||+++++.+++.|++..+++|+|+||||++++..||+|++|++|++++.|+|++++++. +.|.+++
T Consensus 489 ~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~y~~l~ 567 (585)
T TIGR01192 489 NAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKD-GRFYKLL 567 (585)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCC-ChHHHHH
Confidence 999999999999999999999999999887889999999999999889999999999999999999999864 5777766
Q ss_pred Hh
Q 001055 1021 QS 1022 (1171)
Q Consensus 1021 ~~ 1022 (1171)
..
T Consensus 568 ~~ 569 (585)
T TIGR01192 568 RR 569 (585)
T ss_pred Hh
Confidence 54
No 49
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=6.2e-64 Score=618.60 Aligned_cols=501 Identities=22% Similarity=0.303 Sum_probs=378.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHH
Q 001055 507 IYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQ 586 (1171)
Q Consensus 507 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~ 586 (1171)
+++++.++..++.++..++....+.+...++|..++++++++|+.+|+++++|++++|+++|++.+...+...+..++..
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~ 120 (569)
T PRK10789 41 TMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDS 120 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34444455666777778888888999999999999999999999999999999999999999999875544444444444
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHH
Q 001055 587 VSQLLSTFVLI-GIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAD 665 (1171)
Q Consensus 587 ~~~~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~ 665 (1171)
++..+..++++ .++.+...++++.++++.+.+...+.+..++..+......+.+.+.+.|.++|++++|+|+.++++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~ 200 (569)
T PRK10789 121 LVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSA 200 (569)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHH
Confidence 33333332222 23333333322222222223333333333333444445567788899999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHH---HHHHHHHH
Q 001055 666 INGKSMDKNIRYTLVNMGANRWLAIRLEI---VGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYA---LNITSLLT 739 (1171)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~---~~~~~~~~ 739 (1171)
.+.+..+...+..........+....... +..+++++++.+.+. .+.. ++|.++++. ..+..++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~-~g~l--------t~g~l~a~~~~~~~~~~pl~ 271 (569)
T PRK10789 201 LFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVV-NGSL--------TLGQLTSFVMYLGLMIWPML 271 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCc--------CHHHHHHHHHHHHHHHHHHH
Confidence 77766655444333322222222221211 112222222223332 2221 233333333 33444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEE
Q 001055 740 AVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGI 819 (1171)
Q Consensus 740 ~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~i 819 (1171)
.+......+.....+.+|+.++++.+++.+. ..... .+..+.|+++||+|+|++..+++|+|+||+|+||++++|
T Consensus 272 ~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~---~~~~~--~~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~i 346 (569)
T PRK10789 272 ALAWMFNIVERGSAAYSRIRAMLAEAPVVKD---GSEPV--PEGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGI 346 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcccC---CCCCC--CCCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEE
Confidence 5555666777888999999999876544211 10001 112356999999999976445799999999999999999
Q ss_pred ECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCC-CCCHHHHHHHHH
Q 001055 820 VGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALE 898 (1171)
Q Consensus 820 vG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~ 898 (1171)
+||||||||||+++|+|+++|++|+|.+||+++.+++...+|++|+||||+|.+|++|+++||.++. +.++++++++++
T Consensus 347 vG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~ 426 (569)
T PRK10789 347 CGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVAR 426 (569)
T ss_pred ECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998764 468899999999
Q ss_pred HhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEE
Q 001055 899 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLII 978 (1171)
Q Consensus 899 ~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~v 978 (1171)
.+++++++.++|.|++|.+++.+.+||||||||++|||||+++|+||||||||++||+++++.+++.|++..+++|+|+|
T Consensus 427 ~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~i 506 (569)
T PRK10789 427 LASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIIS 506 (569)
T ss_pred HcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998788999999
Q ss_pred ecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHh
Q 001055 979 AHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQS 1022 (1171)
Q Consensus 979 tH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~ 1022 (1171)
|||++.+..||+|++|++|++++.|+|++++++. +.|.+++..
T Consensus 507 tH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~y~~l~~~ 549 (569)
T PRK10789 507 AHRLSALTEASEILVMQHGHIAQRGNHDQLAQQS-GWYRDMYRY 549 (569)
T ss_pred ecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcC-ChHHHHHHH
Confidence 9999999999999999999999999999999764 578777654
No 50
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.6e-63 Score=618.83 Aligned_cols=547 Identities=25% Similarity=0.392 Sum_probs=408.3
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhhhccccccCCC-Cch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 466 VLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTH-GPL-FYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLH 543 (1171)
Q Consensus 466 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~-~~~-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 543 (1171)
+.+.+++.++...+....|..+....|....... ... .+..+++++.+...+..+.+.++....+.+....+|..+++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~ 99 (576)
T TIGR02204 20 VLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFA 99 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445556666666666666666654221111 111 12222333444455667778888888999999999999999
Q ss_pred HHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 544 SILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQ 623 (1171)
Q Consensus 544 ~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 623 (1171)
++++.|..+|+..+.|++++|+++|++.++..+...+..++..++.++..+++++.+.+...++++..+++.+.....+.
T Consensus 100 ~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~ 179 (576)
T TIGR02204 100 HLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFG 179 (576)
T ss_pred HHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999877666666656666666555555555555544443333333333344444
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q 001055 624 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIV---GGLMI 700 (1171)
Q Consensus 624 ~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~ 700 (1171)
+..++..+........+.+.+.|.++|+++||+++.++.+.+.+.+..+..............+.......+ ..+++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (576)
T TIGR02204 180 RRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGV 259 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555556667788999999999999999999998877777666654443332222222222222221 11122
Q ss_pred HHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCC
Q 001055 701 WLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPG 780 (1171)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~ 780 (1171)
++++.+.+.. +..+ .+.+..+..+...+..++..+...+........+.+|+.++++.+++.+..... ....
T Consensus 260 ~~~g~~~v~~-g~lt-----~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~--~~~~ 331 (576)
T TIGR02204 260 LWVGAHDVIA-GKMS-----AGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHP--KTLP 331 (576)
T ss_pred HHHHHHHHHc-CCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCC--ccCC
Confidence 2222222322 2221 112222333344555666666777777888899999999998765542211101 1111
Q ss_pred CCCCccEEEEeeEEEeCCCC-CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH
Q 001055 781 WPSSGSIKFEDVVLRYRPEL-PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD 859 (1171)
Q Consensus 781 ~~~~g~i~~~~vs~~y~~~~-~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~ 859 (1171)
++..+.|+++||+|+|+++. +++|+|+||+|+|||+++|+|+||||||||+++|+|+++|++|+|.+||.+++++++.+
T Consensus 332 ~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~ 411 (576)
T TIGR02204 332 VPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAE 411 (576)
T ss_pred cCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHH
Confidence 12335699999999997532 47999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhheEEEcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 860 LRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 860 ~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
+|++|+|+||+|.+|++|++|||.++. +.++++++++++.+++.++++++|.|++|.+++.|.+||||||||++||||+
T Consensus 412 ~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal 491 (576)
T TIGR02204 412 LRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAI 491 (576)
T ss_pred HHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHH
Confidence 999999999999999999999998754 4578999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHH
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1018 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~ 1018 (1171)
+++|++||||||||+||+++++.+++.|++..+++|+|+||||++.+..||+|++|++|++++.|+|+++++. .+.|.+
T Consensus 492 ~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~-~~~~~~ 570 (576)
T TIGR02204 492 LKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAK-GGLYAR 570 (576)
T ss_pred HhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHc-CChHHH
Confidence 9999999999999999999999999999998889999999999999999999999999999999999999875 456666
Q ss_pred HHH
Q 001055 1019 MVQ 1021 (1171)
Q Consensus 1019 ~~~ 1021 (1171)
++.
T Consensus 571 l~~ 573 (576)
T TIGR02204 571 LAR 573 (576)
T ss_pred HHh
Confidence 553
No 51
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=4.5e-64 Score=616.76 Aligned_cols=504 Identities=23% Similarity=0.303 Sum_probs=369.1
Q ss_pred HHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHH-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 469 LLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYN-TI--YSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSI 545 (1171)
Q Consensus 469 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~i--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 545 (1171)
.+++.++...+....+..++..+|....... ...+. .+ +.++.++..++.++..++......+...++|.++++++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l 96 (529)
T TIGR02868 18 AILLGALALGSAVALLGVSAWLISRAAEMPP-VLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAALRSLGRLRVRVYDRL 96 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444555555555555553221111 11111 11 11234456667788888888889999999999999999
Q ss_pred HcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 001055 546 LRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLL-FYAAYLYYQS 624 (1171)
Q Consensus 546 l~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~~~~ 624 (1171)
+++|..+|+++++|++++|+++|++.++..+...+..++..+..++..+++++++.+...++++..+++ .+....+..+
T Consensus 97 l~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~ 176 (529)
T TIGR02868 97 ARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVLAAGLLLAGFVAPLVSLR 176 (529)
T ss_pred hccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987776666666666666555555555555444433322222 2222233333
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Q 001055 625 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGL---MIW 701 (1171)
Q Consensus 625 ~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~ 701 (1171)
..+...+......+.+.+++.|.++|+++||+|+.++.+.+.+.+..+...+..........+......++..+ +++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (529)
T TIGR02868 177 AARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGAL 256 (529)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344445567788999999999999999999998888887766655544433332222222222222211 111
Q ss_pred HHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCC
Q 001055 702 LTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGW 781 (1171)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~ 781 (1171)
+.+.+.+. .+..+ ...+..++.+...+..++..+............+.+|+.++++.+++.+... ........
T Consensus 257 ~~g~~~~~-~g~~t-----~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~ 329 (529)
T TIGR02868 257 WAGGPAVA-DGTLA-----PATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGV-VPAAGALG 329 (529)
T ss_pred HHHHHHHh-CCCCC-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCC-CCCCcccC
Confidence 22222222 22221 1122233333444556666667777778888999999999987665432111 10011112
Q ss_pred CCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHh
Q 001055 782 PSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 861 (1171)
Q Consensus 782 ~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r 861 (1171)
+..+.|+++||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+++|++|+|.+||+|++++ ..++|
T Consensus 330 ~~~~~I~~~~vsf~Y~~~-~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr 407 (529)
T TIGR02868 330 LGKPTLELRDLSFGYPGS-PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELR 407 (529)
T ss_pred CCCceEEEEEEEEecCCC-CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHH
Confidence 234569999999999764 3699999999999999999999999999999999999999999999999999999 99999
Q ss_pred hheEEEcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 862 KILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 862 ~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
++|+||||+|.+|++||+|||.++. +.++++++++++.++++++++++|+|+||.++++|.+||||||||++|||||++
T Consensus 408 ~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~ 487 (529)
T TIGR02868 408 RRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLA 487 (529)
T ss_pred hheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999864 468999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecCh
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRL 982 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~ 982 (1171)
+|+|||||||||+||+++++.|++.|.+..+++|+|+||||+
T Consensus 488 ~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 488 DAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 999999999999999999999999999988899999999985
No 52
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=6.7e-66 Score=560.84 Aligned_cols=458 Identities=27% Similarity=0.437 Sum_probs=349.4
Q ss_pred CcEEEEeeEEEcCC-CCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCC-----CCccc-----------
Q 001055 161 PAISIRNGYFSWDS-KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV-----SDASA----------- 223 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~-~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~-----~g~~~----------- 223 (1171)
+.++++|++..|.. ++...++++|||+|++||.+||||+||||||-..+.++|+++.. +|.+.
T Consensus 5 ~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se 84 (534)
T COG4172 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84 (534)
T ss_pred cceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence 46899999998863 23467999999999999999999999999999999999999641 12211
Q ss_pred ----eec-CcEEEEecCCCC-Cc--ccHH----HHHhcCCCCC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCC
Q 001055 224 ----VIR-GTVAYVPQVSWI-FN--ATVR----DNILFGSAFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV 287 (1171)
Q Consensus 224 ----~~~-~~i~~v~Q~~~l-~~--~Tv~----eni~~g~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~ 287 (1171)
.+| .+|++++|+|-- .| -||. |-|....... .++..+.++.+++.+--.. +....+
T Consensus 85 ~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~r--------l~~yPH 156 (534)
T COG4172 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKR--------LDAYPH 156 (534)
T ss_pred HHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhh--------hhhCCc
Confidence 123 369999999953 22 2554 4444433322 2344455566665443221 233346
Q ss_pred ccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEeCCEE
Q 001055 288 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMV 365 (1171)
Q Consensus 288 ~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i 365 (1171)
+|||||||||-||.||+.+|++||-||||++||.....+|.+.+..+.. .|.++++||||+..+.. +|||++|.+|++
T Consensus 157 eLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~i 236 (534)
T COG4172 157 ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEI 236 (534)
T ss_pred ccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEE
Confidence 9999999999999999999999999999999999999999998776654 49999999999999986 699999999999
Q ss_pred EEecChhHHhhcch-HHHHHHHHhchhhhhhhccccCccccCCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhc
Q 001055 366 KEEGTFEDLSNNGE-LFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERE 444 (1171)
Q Consensus 366 ~~~g~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (1171)
+++|+.+++..++. .|....-+
T Consensus 237 vE~~~t~~lF~~PqHpYTr~Ll~--------------------------------------------------------- 259 (534)
T COG4172 237 VETGTTETLFAAPQHPYTRKLLA--------------------------------------------------------- 259 (534)
T ss_pred eecCcHHHHhhCCCChHHHHHHh---------------------------------------------------------
Confidence 99998777654310 01000000
Q ss_pred cccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 001055 445 TGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSY 524 (1171)
Q Consensus 445 ~g~~~~~~l~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 524 (1171)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 525 WLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMS 604 (1171)
Q Consensus 525 ~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (1171)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 605 LWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGA 684 (1171)
Q Consensus 605 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1171)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 001055 685 NRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIEL 764 (1171)
Q Consensus 685 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~ 764 (1171)
..
T Consensus 260 ------------------------------------------------------------------------------ae 261 (534)
T COG4172 260 ------------------------------------------------------------------------------AE 261 (534)
T ss_pred ------------------------------------------------------------------------------cC
Confidence 00
Q ss_pred CCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCC---------CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHh
Q 001055 765 PSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE---------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF 835 (1171)
Q Consensus 765 ~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~---------~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~ 835 (1171)
|...+ ++........++.+||.+.|+-+ ...+++++||++++||.+||||.||||||||-.+|+
T Consensus 262 P~g~~-------~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~all 334 (534)
T COG4172 262 PSGDP-------PPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALL 334 (534)
T ss_pred CCCCC-------CCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHH
Confidence 00000 00000112247778887777421 124899999999999999999999999999999999
Q ss_pred cCCCCCCceEEECCEecCCCChHH---HhhheEEEcCCcc--ccc-ccHHhhc----cCCC-CCC----HHHHHHHHHHh
Q 001055 836 RIVELERGRILIDGFDIAKFGLMD---LRKILGIIPQSPV--LFS-GTVRFNL----DPFS-EHS----DADLWEALERA 900 (1171)
Q Consensus 836 g~~~p~~G~I~i~g~~i~~~~~~~---~r~~i~~v~Q~~~--lf~-~tv~~nl----~~~~-~~~----~~~i~~~l~~~ 900 (1171)
|+++++ |+|.++|.++...+.++ +|+++-+|+|||+ |-. .||.+-+ .... ..+ ++.+.++++.+
T Consensus 335 rL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EV 413 (534)
T COG4172 335 RLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEV 413 (534)
T ss_pred hhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHc
Confidence 999876 99999999999888776 5889999999996 332 3766543 2222 122 34566777776
Q ss_pred cHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEE
Q 001055 901 HLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLII 978 (1171)
Q Consensus 901 ~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~v 978 (1171)
|++.-. .++.+..+|||||||++||||++-+|++++||||||+||.--...+.+.|+++. .+-+-++|
T Consensus 414 GLDp~~----------r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFI 483 (534)
T COG4172 414 GLDPAT----------RNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFI 483 (534)
T ss_pred CCChhH----------hhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 654322 345567899999999999999999999999999999999999999999999875 36899999
Q ss_pred ecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCChHHHH
Q 001055 979 AHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1019 (1171)
Q Consensus 979 tH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~ 1019 (1171)
|||+..++. ||+|+||.+|+|||+|+.+++.+++...|.+.
T Consensus 484 SHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~~YT~~ 525 (534)
T COG4172 484 SHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTRA 525 (534)
T ss_pred eccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCcHHHHH
Confidence 999999998 99999999999999999999999887777643
No 53
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=2.4e-63 Score=610.38 Aligned_cols=513 Identities=24% Similarity=0.298 Sum_probs=380.9
Q ss_pred HHHHHHHHHHHHHHhHHhhhhhhccccc-cCCC-C-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 468 ILLLCYFLTETLRVSSSTWLSYWTDQSS-LKTH-G-PLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHS 544 (1171)
Q Consensus 468 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~-~~~~-~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 544 (1171)
+.+++.++...+....+..++..+|... .... . ...+..++.++.++..++.+++.++....+.+...++|..++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 86 (529)
T TIGR02857 7 LLGLLGALGALLIIAQAWLLARVIDGLISAGEPLAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRERLLAA 86 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555556666666666665432 1111 1 12233344555666778888999999999999999999999999
Q ss_pred HHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 545 ILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQS 624 (1171)
Q Consensus 545 ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 624 (1171)
+++.|..+|++.++|++++|+++|++.++..+...+..++..++..+..+++++...+...++++..+++...+...+.+
T Consensus 87 l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~~~~~~ 166 (529)
T TIGR02857 87 VAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFMILIGW 166 (529)
T ss_pred HHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998877665556555555555555545544444333332222222222223333
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Q 001055 625 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGL---MIW 701 (1171)
Q Consensus 625 ~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~ 701 (1171)
..+...+......+.+.+.+.|+++|+++||+|+.++++.+.+.+..+...+..........+......++..+ +++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (529)
T TIGR02857 167 AAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVA 246 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444556788899999999999999999998888777666555444333222222322222222221 212
Q ss_pred HHHHHHHHhcCCcchhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCC
Q 001055 702 LTATFAVVQNGSAENQEAFASTMGLLLS---YALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPP 778 (1171)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~---~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~ 778 (1171)
+++.+.+. .+.. ++|.+++ +...+..++..+............+.+|+.++++.+++... .. +.
T Consensus 247 ~~~~~~~~-~g~~--------t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~---~~-~~ 313 (529)
T TIGR02857 247 VYIGFRLL-AGDL--------DLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG---KA-PV 313 (529)
T ss_pred HHHHHHHH-cCCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC---Cc-CC
Confidence 22222222 2222 2233333 33344455555566667778889999999999875432211 11 11
Q ss_pred CCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChH
Q 001055 779 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM 858 (1171)
Q Consensus 779 ~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~ 858 (1171)
+ .+..+.|+++||+|+|+++.+++|+|+||+|+|||++||+||||||||||+++|+|+++|++|+|.+||.|+++++.+
T Consensus 314 ~-~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~ 392 (529)
T TIGR02857 314 T-AAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADAD 392 (529)
T ss_pred C-CCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHH
Confidence 1 112346999999999976545799999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 937 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 937 (1171)
++|++|+||||+|.+|++|++|||.++. ..++++++++++.++++++++++|.|+||.+++.|.+||||||||++||||
T Consensus 393 ~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRa 472 (529)
T TIGR02857 393 SWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARA 472 (529)
T ss_pred HHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHH
Confidence 9999999999999999999999998764 458899999999999999999999999999999999999999999999999
Q ss_pred hccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEE
Q 001055 938 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLL 994 (1171)
Q Consensus 938 ll~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl 994 (1171)
++++|+|||||||||+||+++++.+++.|++..+++|+|+||||++++..||+|++|
T Consensus 473 l~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 473 FLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999999999999999988899999999999999999999985
No 54
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=4.5e-63 Score=655.93 Aligned_cols=211 Identities=26% Similarity=0.393 Sum_probs=175.0
Q ss_pred cEEEEeeEEEeC--CCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCceEEECCEecCCCChHHH
Q 001055 786 SIKFEDVVLRYR--PELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE---LERGRILIDGFDIAKFGLMDL 860 (1171)
Q Consensus 786 ~i~~~~vs~~y~--~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~---p~~G~I~i~g~~i~~~~~~~~ 860 (1171)
.++++||+++|+ ++.+++|+|||+++++||++||+||||||||||+++|+|..+ |++|+|.+||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 479999999995 223479999999999999999999999999999999999997 78899999999984 257
Q ss_pred hhheEEEcCCcccc-cccHHhhccCCC------CCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHH
Q 001055 861 RKILGIIPQSPVLF-SGTVRFNLDPFS------EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 929 (1171)
Q Consensus 861 r~~i~~v~Q~~~lf-~~tv~~nl~~~~------~~~~~----~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqk 929 (1171)
|+.+|||||++.++ ..||+|||.+.. ..+++ .+.++++..++.+ -.++.+++.+..||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~-------~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMES-------YADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh-------hCCCeeCCCCCCCCHHHh
Confidence 88999999998655 569999997421 12222 2344444444332 235566666668999999
Q ss_pred HHHHHHHHhccCCC-EEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhh--hhcCEEEEEeCc-EEEEecC
Q 001055 930 QLLSLSRALLRRSK-ILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTI--IDCDRILLLDSG-RVLEYDT 1004 (1171)
Q Consensus 930 qrl~lArall~~p~-iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~--~~~d~i~vl~~G-~i~~~g~ 1004 (1171)
|||+|||+|+.+|+ ||+|||||+|||+.+...+++.|+++. +++|||+++|+++.. ..||++++|++| ++++.|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 999999999999999999999999974 579999999999974 459999999987 9999998
Q ss_pred hhH
Q 001055 1005 PEE 1007 (1171)
Q Consensus 1005 ~~e 1007 (1171)
+.+
T Consensus 988 ~~~ 990 (1394)
T TIGR00956 988 LGE 990 (1394)
T ss_pred ccc
Confidence 743
No 55
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2e-61 Score=594.05 Aligned_cols=526 Identities=18% Similarity=0.217 Sum_probs=379.8
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhhhccccccCCC-Cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 467 LILLLCYFLTETLRVSSSTWLSYWTDQSSLKTH-GP-LFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHS 544 (1171)
Q Consensus 467 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~-~~-~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 544 (1171)
+..+++.++...+....|.++...+|....... .. ..+..+++++.+...++.+++.++....+.+...++|.+++++
T Consensus 9 ~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ 88 (544)
T TIGR01842 9 IIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIFAA 88 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555556666667777666664321111 11 1223334444555667788888899999999999999999999
Q ss_pred HHcCCccccccCChhHHHHHHHhhhhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 545 ILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAV-FVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQ 623 (1171)
Q Consensus 545 ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 623 (1171)
+++.|+. ..+..++++++|++.+...+.. ....++..++.++.. ++++.+.+...++++..+++++.+..++.
T Consensus 89 ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~li~l~~~~l~~~i~~~~~ 162 (544)
T TIGR01842 89 SFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYL-LVCFLLHPWIGILALGGAVVLVGLALLNN 162 (544)
T ss_pred HhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 9999984 2356788999999999876544 233333333332222 23333333332222221222222222333
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 001055 624 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRL---EIVGGLMI 700 (1171)
Q Consensus 624 ~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~ 700 (1171)
+..++..+......+...+.+.|.++|++++|+|+.++++.+.+.+..+...+................ ..+..+++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (544)
T TIGR01842 163 RATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLV 242 (544)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344445566778899999999999999999998888777666655443332222222211111 11222222
Q ss_pred HHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCC
Q 001055 701 WLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPG 780 (1171)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~ 780 (1171)
+.++.+.+. .+..+. +.+..++.+...+..++..+......+.....+.+|+.++++.+++... . ...
T Consensus 243 ~~~g~~l~~-~g~it~-----g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~-~~~-- 310 (544)
T TIGR01842 243 LGLGAYLAI-DGEITP-----GMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP---A-MPL-- 310 (544)
T ss_pred HHHHHHHHH-cCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC---C-CCC--
Confidence 222333332 222221 1111222333344555566666666778889999999999876554321 1 111
Q ss_pred CCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH
Q 001055 781 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL 860 (1171)
Q Consensus 781 ~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~ 860 (1171)
.+..+.++++||+|+|+++.+++|+|+||+++|||++||+||||||||||+++|+|+++|++|+|.+||.++.+++...+
T Consensus 311 ~~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~ 390 (544)
T TIGR01842 311 PEPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETF 390 (544)
T ss_pred CCCCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHH
Confidence 11235699999999997544579999999999999999999999999999999999999999999999999999999999
Q ss_pred hhheEEEcCCcccccccHHhhccCCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001055 861 RKILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 939 (1171)
Q Consensus 861 r~~i~~v~Q~~~lf~~tv~~nl~~~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 939 (1171)
|+.++||||+|.+|++|+++|+.++.+ .++++++++++.++++++++++|.|++|.+++.+.+||||||||++||||++
T Consensus 391 ~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall 470 (544)
T TIGR01842 391 GKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALY 470 (544)
T ss_pred hhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999986554 6889999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhh
Q 001055 940 RRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 940 ~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
++|++|||||||++||+++++.+.+.|++.. +++|+|+||||++.+..||+|++|++|++++.|+|+++++
T Consensus 471 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 471 GDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999999999999875 5799999999999988899999999999999999999875
No 56
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=5.1e-63 Score=614.48 Aligned_cols=200 Identities=19% Similarity=0.285 Sum_probs=161.8
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhhe
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 864 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 864 (1171)
..++++||+++|++. +++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 507 ~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 507 PIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred ceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 359999999999643 3599999999999999999999999999999999999999999999875 2469
Q ss_pred EEEcCCcccccccHHhhcc-----CCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001055 865 GIIPQSPVLFSGTVRFNLD-----PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 939 (1171)
Q Consensus 865 ~~v~Q~~~lf~~tv~~nl~-----~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 939 (1171)
||+||++. ...++.+|.. .+....++++.+.++..++.+ ........+|||||||||+|||||+
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~----------~~~~~~~~~LSgGqkqRvaLAraL~ 643 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG----------NLALQPMYTLSGGQKSRVAFAKITF 643 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCCh----------HHhcCCccccCHHHHHHHHHHHHHh
Confidence 99999863 2223433321 111223444555555544321 1334556789999999999999999
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEE-EecChhHHh
Q 001055 940 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVL-EYDTPEELL 1009 (1171)
Q Consensus 940 ~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~-~~g~~~el~ 1009 (1171)
.+|++|||||||++||+.+...+.+.|.+. ++|||+||||++++.. ||++++|++|+++ ..|+++++.
T Consensus 644 ~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 644 KKPHILLLDEPSNHLDLDAVEALIQGLVLF--QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 999999999999999999999999999874 4699999999999987 9999999999998 568887764
No 57
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=5.7e-62 Score=645.50 Aligned_cols=564 Identities=19% Similarity=0.269 Sum_probs=417.2
Q ss_pred chHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 448 VSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLI 527 (1171)
Q Consensus 448 ~~~~~l~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 527 (1171)
+++..+++|...... +.+++.+++.++...+....+..++..+|.... ......+...+++++++.+++.+++.++..
T Consensus 45 ~~~~~~~~~~~~~~~-~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 122 (1466)
T PTZ00265 45 IPFFLPFKCLPASHR-KLLGVSFVCATISGGTLPFFVSVFGVIMKNMNL-GENVNDIIFSLVLIGIFQFILSFISSFCMD 122 (1466)
T ss_pred ccHHHHHhcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444454433222 233344444455555555555566655553211 112223344555667778888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 528 ISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWA 607 (1171)
Q Consensus 528 ~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (1171)
..+.+...++|.+++++++++|+.||+.++.|++++|++.|+..+...+...+..++..++.++..++++++..+...++
T Consensus 123 ~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv 202 (1466)
T PTZ00265 123 VVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLC 202 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999988887778888888777777777777777655544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 608 IMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRW 687 (1171)
Q Consensus 608 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1171)
++.++++++.+..++.+..+...+......+...+.+.|+++|+++||+|+.++++.+.+.+......+..........+
T Consensus 203 ~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~ 282 (1466)
T PTZ00265 203 ITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESL 282 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433333444444444444444445567888999999999999999999998888877666555544333222222
Q ss_pred HHHHH----HHHHHHHHHHHHHHHHHhc-------CCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 688 LAIRL----EIVGGLMIWLTATFAVVQN-------GSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVE 756 (1171)
Q Consensus 688 ~~~~~----~~~~~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 756 (1171)
..... .+..++++|+++ +.+..+ +..+....++..++.++++ ..+..+......+..+..+.+
T Consensus 283 ~~~~~~~~~~~~~~l~~~~G~-~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~-----~~l~~i~~~~~~~~~a~~a~~ 356 (1466)
T PTZ00265 283 HIGMINGFILASYAFGFWYGT-RIIISDLSNQQPNNDFHGGSVISILLGVLISM-----FMLTIILPNITEYMKSLEATN 356 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHcCCcccccccccchhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 11111 122223333333 233322 1111112222223322221 112233344556677889999
Q ss_pred HHHhhhcCCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCCC-CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHh
Q 001055 757 RVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPEL-PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF 835 (1171)
Q Consensus 757 R~~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~-~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~ 835 (1171)
|+.++++.+++.+.. +.... .+..+.|+++||+|+|+... .++|+|+||+|++||++||+||||||||||+++|+
T Consensus 357 ri~~ii~~~~~~~~~-~~~~~---~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~ 432 (1466)
T PTZ00265 357 SLYEIINRKPLVENN-DDGKK---LKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIE 432 (1466)
T ss_pred HHHHHHcCCCCCCCC-CCCcc---CCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 999998766543211 11111 11224699999999997532 36999999999999999999999999999999999
Q ss_pred cCCCCCCceEEE-CCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCC----------------------------
Q 001055 836 RIVELERGRILI-DGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS---------------------------- 886 (1171)
Q Consensus 836 g~~~p~~G~I~i-~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---------------------------- 886 (1171)
|+|+|++|+|.+ ||.++.+++..++|++||||||+|.+|++||++||.+..
T Consensus 433 gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (1466)
T PTZ00265 433 RLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRN 512 (1466)
T ss_pred HhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccc
Confidence 999999999999 579999999999999999999999999999999997531
Q ss_pred ------------------------------CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001055 887 ------------------------------EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 936 (1171)
Q Consensus 887 ------------------------------~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 936 (1171)
..++++++++++.+++++++.++|.|++|.+++.+.+|||||||||+|||
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIAR 592 (1466)
T PTZ00265 513 SCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIAR 592 (1466)
T ss_pred cccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHH
Confidence 13567899999999999999999999999999999999999999999999
Q ss_pred HhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhhcCEEEEEeCc-----------------
Q 001055 937 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSG----------------- 997 (1171)
Q Consensus 937 all~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~vl~~G----------------- 997 (1171)
||+++|+|||||||||+||+.+++.+++.|+++. +++|+|+||||+++++.||+|++|++|
T Consensus 593 All~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~ 672 (1466)
T PTZ00265 593 AIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTK 672 (1466)
T ss_pred HHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccc
Confidence 9999999999999999999999999999999986 479999999999999889999999986
Q ss_pred ------------------------------EEEEecChhHHhhcCCChHHHHHHhh
Q 001055 998 ------------------------------RVLEYDTPEELLSNEGSSFSKMVQST 1023 (1171)
Q Consensus 998 ------------------------------~i~~~g~~~el~~~~~~~~~~~~~~~ 1023 (1171)
+|+|+|+|+||+++..+.|+.++..+
T Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q 728 (1466)
T PTZ00265 673 DNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQ 728 (1466)
T ss_pred cccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhh
Confidence 59999999999986678999988654
No 58
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=3.2e-59 Score=574.61 Aligned_cols=515 Identities=16% Similarity=0.126 Sum_probs=359.0
Q ss_pred HHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q 001055 471 LCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPM 550 (1171)
Q Consensus 471 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~ 550 (1171)
++.++........+.+++.+.+....... .....+.++.++..++.++..++....+.+...++|..++++++++|+
T Consensus 25 ~~~~~~~~~~~~~~~~i~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~ 101 (555)
T TIGR01194 25 ALGLAGGLAIIALLASINNAIHEENFLGQ---GSLFSFGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPI 101 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 33444444445555566666543211110 111223344555667788888999999999999999999999999999
Q ss_pred cccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 551 VFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVK 630 (1171)
Q Consensus 551 ~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~ 630 (1171)
.+|+++++|++++|+++|++.++..+.. ...++..++.++..+++++++.+...++++.++++.+..+.+..+..++..
T Consensus 102 ~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~ 180 (555)
T TIGR01194 102 EEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFF 180 (555)
T ss_pred HHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999886643 444444444444444445555554444333333332333333333333333
Q ss_pred HHHHHhcchHHHHHHHHHccHHHHHHhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 631 RLDSITRSPVYAQFGEALNGLSTIRAYKAYD--RMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAV 708 (1171)
Q Consensus 631 ~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 708 (1171)
.......+.+.+.+.|.+.|++++|+|+.++ ...+.+.+..+...+.................++..+.+.+...+..
T Consensus 181 ~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (555)
T TIGR01194 181 HAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFLLIGCALFAAA 260 (555)
T ss_pred HHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455678889999999999999999843 33344444443333322221111111111111111111111111110
Q ss_pred HhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcc---cCCCCC--CCCCCC
Q 001055 709 VQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLV---IESNRP--PPGWPS 783 (1171)
Q Consensus 709 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~---~~~~~~--~~~~~~ 783 (1171)
.. +..+ ...+..++.+...+..++..+.......+....+.+|+.++++.+.+++.. .+.... .+....
T Consensus 261 ~~-~~~t-----~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (555)
T TIGR01194 261 MF-ASID-----AAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKS 334 (555)
T ss_pred Hh-cCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCC
Confidence 11 1111 112222333344455666666777777888899999999987542221110 000000 011112
Q ss_pred CccEEEEeeEEEeCCC---CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH
Q 001055 784 SGSIKFEDVVLRYRPE---LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL 860 (1171)
Q Consensus 784 ~g~i~~~~vs~~y~~~---~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~ 860 (1171)
.+.|+++||+|+|+++ .+++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++..++
T Consensus 335 ~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~ 414 (555)
T TIGR01194 335 VDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDY 414 (555)
T ss_pred CceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHH
Confidence 3569999999999753 2369999999999999999999999999999999999999999999999999999999999
Q ss_pred hhheEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 861 RKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 861 r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
|++++||||++.+|++|+++|+. .+.++++++++++.++++++++.+|.|++|. .+|||||||||+||||+++
T Consensus 415 ~~~i~~v~q~~~lf~~ti~~n~~--~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlalaRall~ 487 (555)
T TIGR01194 415 RDLFSAIFADFHLFDDLIGPDEG--EHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLALICAWLE 487 (555)
T ss_pred HhhCcEEccChhhhhhhhhcccc--cchhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999963 3456788999999999999999999999985 6799999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHH-H-cCCcEEEEEecChhhhhhcCEEEEEeCcEEEEe
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIRE-E-FKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEY 1002 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~-~-~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~ 1002 (1171)
+|+||||||||++||+++++.+++.+.+ . .+++|+|+||||++++..||+|++|++|++++.
T Consensus 488 ~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 488 DRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999887643 3 358999999999999988999999999999875
No 59
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=7.1e-62 Score=594.68 Aligned_cols=191 Identities=21% Similarity=0.294 Sum_probs=160.9
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++ ..++
T Consensus 340 ~l~~~~ls~~~~~---~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~ 403 (590)
T PRK13409 340 LVEYPDLTKKLGD---FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKIS 403 (590)
T ss_pred EEEEcceEEEECC---EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEE
Confidence 4899999999964 25999999999999999999999999999999999999999999985 1599
Q ss_pred EEcCCcccc-cccHHhhccCCCC-CC-HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 866 IIPQSPVLF-SGTVRFNLDPFSE-HS-DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 866 ~v~Q~~~lf-~~tv~~nl~~~~~-~~-~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
|+||++.++ +.||++|+..... .. ...+. +.++. .|++...+....+|||||||||+|||||+.+|
T Consensus 404 y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~---------~~L~~--l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p 472 (590)
T PRK13409 404 YKPQYIKPDYDGTVEDLLRSITDDLGSSYYKS---------EIIKP--LQLERLLDKNVKDLSGGELQRVAIAACLSRDA 472 (590)
T ss_pred EecccccCCCCCcHHHHHHHHhhhcChHHHHH---------HHHHH--CCCHHHHhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 999998755 5699999864311 11 12223 33333 34555556667889999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecC
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 1004 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~ 1004 (1171)
+||||||||++||+.+...+.+.|+++.. ++|+|+||||++++.. ||||++|++ ++...|+
T Consensus 473 ~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 473 DLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 99999999999999999999999998753 7899999999999987 999999965 8877776
No 60
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-61 Score=566.07 Aligned_cols=383 Identities=25% Similarity=0.364 Sum_probs=334.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 001055 5 QTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIP-- 82 (1171)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~-- 82 (1171)
..++++..++.+++.+++..+..+...|.+++|||||+|+.|+....++.+.-+...+..+|.....+++....+...
T Consensus 305 ~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~ 384 (716)
T KOG0058|consen 305 AKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIFFGSTNLLGNL 384 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHhHhHHHHHHhH
Confidence 345666778889999999999999999999999999999999999998887777666666665554444433333222
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCC-CCCC
Q 001055 83 VLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLT-SGLP 161 (1171)
Q Consensus 83 ~~~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~-~~~~ 161 (1171)
..+.++++|.+++..|.||++.+.+++.+-..+..++..+...+..++++..|..|+.|+++.+++........+ .-..
T Consensus 385 ~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~G~~~p~~~~G 464 (716)
T KOG0058|consen 385 AVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLTGTLAPDHLQG 464 (716)
T ss_pred HHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCCCccccccccc
Confidence 335567789999999999999999999999999999999999999999999999999999998775433211111 2234
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccc------------eecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA------------VIRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~------------~~~~~i 229 (1171)
.|+|+||+|+||.+++.++|+|+||+|+|||+||||||||+||||+.++|..+|+|++|.+. .+|.+|
T Consensus 465 ~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~I 544 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKI 544 (716)
T ss_pred eEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHe
Confidence 69999999999998888999999999999999999999999999999999999999998753 256789
Q ss_pred EEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCC
Q 001055 230 AYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 308 (1171)
Q Consensus 230 ~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~ 308 (1171)
|+|.|+|.||++||+|||.+|.+ .+++++.++++.++.++++..+|+|++|.+||+|..|||||||||||||||++||.
T Consensus 545 g~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~ 624 (716)
T KOG0058|consen 545 GLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPR 624 (716)
T ss_pred eeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCC
Confidence 99999999999999999999965 46788999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcc-hHHHHHHHH
Q 001055 309 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNG-ELFQKLMEN 387 (1171)
Q Consensus 309 vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~~~~~~~~ 387 (1171)
||||||+||+||.+++..+-+.+-+ ..+++|||+|+|+++.++.+|+|+++++|++++.|+++|++++. +.|.+++..
T Consensus 625 VLILDEATSALDaeSE~lVq~aL~~-~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~~Lv~~ 703 (716)
T KOG0058|consen 625 VLILDEATSALDAESEYLVQEALDR-LMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQR 703 (716)
T ss_pred EEEEechhhhcchhhHHHHHHHHHH-hhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCcccHHHHHHHH
Confidence 9999999999999999888775533 44679999999999999999999999999999999999999887 789988865
Q ss_pred h
Q 001055 388 A 388 (1171)
Q Consensus 388 ~ 388 (1171)
+
T Consensus 704 q 704 (716)
T KOG0058|consen 704 Q 704 (716)
T ss_pred h
Confidence 4
No 61
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-61 Score=558.69 Aligned_cols=442 Identities=24% Similarity=0.357 Sum_probs=341.6
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecC
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRG 227 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~ 227 (1171)
+.++++|++++|+. -++|++|||++++||++||+|+||||||||+|+|+|.++|++|.+.. ...
T Consensus 7 ~ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~ 83 (500)
T COG1129 7 PLLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAA 83 (500)
T ss_pred ceeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhC
Confidence 46899999999974 47999999999999999999999999999999999999999986543 123
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCCCC-------HHHHHH----HHHHcCchHHHhcCCCCCccccCCCCCccChHHHH
Q 001055 228 TVAYVPQVSWIF-NATVRDNILFGSAFE-------PARYEK----AIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 295 (1171)
Q Consensus 228 ~i~~v~Q~~~l~-~~Tv~eni~~g~~~~-------~~~~~~----~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrq 295 (1171)
.|+.|+|+..|+ +.||.|||.+|+... ..++.+ +++..++. . .......+||+||||
T Consensus 84 GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~----------~-~~~~~v~~LsiaqrQ 152 (500)
T COG1129 84 GIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLD----------I-DPDTLVGDLSIAQRQ 152 (500)
T ss_pred CcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCC----------C-ChhhhhhhCCHHHHH
Confidence 599999999986 789999999986432 222222 22222221 0 134456789999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecCh-hH
Q 001055 296 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTF-ED 373 (1171)
Q Consensus 296 Rv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~-~~ 373 (1171)
-|+|||||..+++|+|||||||+|++...+.+|+.+.+.+.+|.++|+|||+++++.. ||||.+|.||+.+..++. ++
T Consensus 153 ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~ 232 (500)
T COG1129 153 MVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAE 232 (500)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccC
Confidence 9999999999999999999999999999999999888888899999999999999865 799999999998865431 11
Q ss_pred HhhcchHHHHHHHHhchhhhhhhccccCccccCCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhccccchHHHH
Q 001055 374 LSNNGELFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVL 453 (1171)
Q Consensus 374 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l 453 (1171)
+..
T Consensus 233 ~~~----------------------------------------------------------------------------- 235 (500)
T COG1129 233 TSE----------------------------------------------------------------------------- 235 (500)
T ss_pred CCH-----------------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 454 SRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYA 533 (1171)
Q Consensus 454 ~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 533 (1171)
T Consensus 236 -------------------------------------------------------------------------------- 235 (500)
T COG1129 236 -------------------------------------------------------------------------------- 235 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 534 AKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLL 613 (1171)
Q Consensus 534 ~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 613 (1171)
+.+ +..+.
T Consensus 236 ------------------------------------~~l-------v~~Mv----------------------------- 243 (500)
T COG1129 236 ------------------------------------DEL-------VRLMV----------------------------- 243 (500)
T ss_pred ------------------------------------HHH-------HHHhh-----------------------------
Confidence 000 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 614 LFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLE 693 (1171)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1171)
T Consensus 244 -------------------------------------------------------------------------------- 243 (500)
T COG1129 244 -------------------------------------------------------------------------------- 243 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccC
Q 001055 694 IVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIE 773 (1171)
Q Consensus 694 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~ 773 (1171)
+. . +.+. .+. + ..
T Consensus 244 -----------------Gr-----------------------------------------~---~~~~--~~~--~-~~- 256 (500)
T COG1129 244 -----------------GR-----------------------------------------E---LEDL--FPE--P-PE- 256 (500)
T ss_pred -----------------Cc-----------------------------------------c---hhhh--ccc--c-cc-
Confidence 00 0 0000 000 0 00
Q ss_pred CCCCCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecC
Q 001055 774 SNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA 853 (1171)
Q Consensus 774 ~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~ 853 (1171)
. .+....++++|++.. ..++|+||++++||++||.|--|||+|-|+++|+|..++.+|+|.+||+++.
T Consensus 257 ~------~~~~~~l~v~~l~~~------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~ 324 (500)
T COG1129 257 E------GIGEPVLEVRNLSGG------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVR 324 (500)
T ss_pred c------CCCCcEEEEecCCCC------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEcc
Confidence 0 001123778887653 2589999999999999999999999999999999999999999999999998
Q ss_pred CCChH-HHhhheEEEcCCc---ccc-cccHHhhccCCC--CCCHH-HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCC
Q 001055 854 KFGLM-DLRKILGIIPQSP---VLF-SGTVRFNLDPFS--EHSDA-DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFS 925 (1171)
Q Consensus 854 ~~~~~-~~r~~i~~v~Q~~---~lf-~~tv~~nl~~~~--~~~~~-~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LS 925 (1171)
-.++. ..+..|+|||.|. -+| ..+|++|+.... ..... -+....++..+.+++.++...... ......+||
T Consensus 325 ~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s-~~~~v~~LS 403 (500)
T COG1129 325 IRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPS-PEQPIGTLS 403 (500)
T ss_pred CCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCC-ccchhhcCC
Confidence 77766 4677899999986 355 559999996431 11111 244445556667777776433222 235567899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEec
Q 001055 926 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 926 gGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
||++||+.|||+|..+|+||||||||.|+|..++++|++.|+++. +|.+||+||.++.++.. ||||+||.+|+|+..=
T Consensus 404 GGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~ 483 (500)
T COG1129 404 GGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGEL 483 (500)
T ss_pred chhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEe
Confidence 999999999999999999999999999999999999999999987 47999999999999886 9999999999999864
Q ss_pred Ch
Q 001055 1004 TP 1005 (1171)
Q Consensus 1004 ~~ 1005 (1171)
+.
T Consensus 484 ~~ 485 (500)
T COG1129 484 DR 485 (500)
T ss_pred cc
Confidence 33
No 62
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-61 Score=528.31 Aligned_cols=486 Identities=25% Similarity=0.383 Sum_probs=368.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 525 WLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMS 604 (1171)
Q Consensus 525 ~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (1171)
++...+..+...+--..|.|+.++.+.|.-+..+|.+...+..-...|+..+...+...+..++.+....+..+....+.
T Consensus 5 ~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~ 84 (497)
T COG5265 5 LFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWW 84 (497)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccH
Confidence 44555666777777888999999999999887777665555444444444444445555555555544444333332222
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 605 LWAIMPLLLLFYAAYLYY-QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMG 683 (1171)
Q Consensus 605 ~~~~~~ll~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1171)
+..+..+.++.|..+... ....-..++....+.+...+.-.+++-+..++|.|+.|++....+...++.+.+.......
T Consensus 85 f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~ 164 (497)
T COG5265 85 FALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHV 164 (497)
T ss_pred HHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHH
Confidence 222222333333333322 1222234455555566677788899999999999999999999998888888777666555
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001055 684 ANRWLAIRLEIVGGLMIWLT---ATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGN 760 (1171)
Q Consensus 684 ~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~ 760 (1171)
.-.|+.+....+........ ....+.. +..+ .......-.+..++..++..+...+..+.+....++++.+
T Consensus 165 Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~-g~~T-----vgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfd 238 (497)
T COG5265 165 SLLVLNFGQTAIFSTGLRVMMTMSALGVEE-GQLT-----VGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFD 238 (497)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhcHHHHhh-ccCC-----chhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHH
Confidence 55555554443322211111 1111111 1111 1112223334445555555566666667777788888888
Q ss_pred hhcCCCCCCcccCCCCCCCCC-CCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 001055 761 YIELPSEAPLVIESNRPPPGW-PSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 761 ~~~~~~e~~~~~~~~~~~~~~-~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
+.+.+.+.. +....++-| -..|.+.|+||+|.|.+. +++|+++||++++|+++||||++|+||||++++|.|+|+
T Consensus 239 Ll~~~~~v~---d~pda~~L~~~~~g~v~F~~V~F~y~~~-r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD 314 (497)
T COG5265 239 LLDVEAEVS---DAPDAPPLWPVRLGAVAFINVSFAYDPR-RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD 314 (497)
T ss_pred hhccchhhc---cCCCCccccccccceEEEEEEEeecccc-chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC
Confidence 776655432 222233344 335679999999999876 489999999999999999999999999999999999999
Q ss_pred CCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhh
Q 001055 840 LERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVS 918 (1171)
Q Consensus 840 p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~ 918 (1171)
+++|.|.+||+|+.......+|+.||+||||..||+.|+..|+.+.. ..+++++..+++.+.++++++.+|+|+++.++
T Consensus 315 ~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vg 394 (497)
T COG5265 315 VNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVG 394 (497)
T ss_pred CcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccc
Confidence 99999999999999999999999999999999999999999998765 46899999999999999999999999999999
Q ss_pred cCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcE
Q 001055 919 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGR 998 (1171)
Q Consensus 919 ~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~ 998 (1171)
++|-.|||||||||+|||+++++|+||+|||+||+||..|++.|+..|++...++|.++|+||++++.+||.|+||++|+
T Consensus 395 erglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~ 474 (497)
T COG5265 395 ERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGR 474 (497)
T ss_pred hheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecChhHHhhcCCChHHHHHH
Q 001055 999 VLEYDTPEELLSNEGSSFSKMVQ 1021 (1171)
Q Consensus 999 i~~~g~~~el~~~~~~~~~~~~~ 1021 (1171)
|+|.|+|+||+++ ++.|.+|+.
T Consensus 475 i~erg~h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 475 IVERGTHEELLAA-GGLYAEMWR 496 (497)
T ss_pred EEecCcHHHHHHc-CChHHHHhc
Confidence 9999999999987 788988874
No 63
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=4.6e-60 Score=623.92 Aligned_cols=211 Identities=25% Similarity=0.325 Sum_probs=170.4
Q ss_pred cEEEEeeEEEeCC-----------CCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCceEEECCEec
Q 001055 786 SIKFEDVVLRYRP-----------ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--ERGRILIDGFDI 852 (1171)
Q Consensus 786 ~i~~~~vs~~y~~-----------~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p--~~G~I~i~g~~i 852 (1171)
.+.++||++.++. +...+|+|||++++||+++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 5899999998742 123699999999999999999999999999999999999774 689999999876
Q ss_pred CCCChHHHhhheEEEcCCcccccc-cHHhhccCCC------CCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcC-
Q 001055 853 AKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFS------EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEA- 920 (1171)
Q Consensus 853 ~~~~~~~~r~~i~~v~Q~~~lf~~-tv~~nl~~~~------~~~~~----~i~~~l~~~~~~~~i~~lp~gl~~~~~~~- 920 (1171)
. ....|+.+|||+|++.++.. ||+|||.+.. ..+++ .+.+.++..++.+.. ++.++..
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~-------~~~vg~~~ 1016 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLK-------DAIVGLPG 1016 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHh-------CCccCCCC
Confidence 4 24567789999999987764 9999996421 11222 234445554444322 2333322
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhh-h-hhcCEEEEEeC-
Q 001055 921 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT-I-IDCDRILLLDS- 996 (1171)
Q Consensus 921 ~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~-~-~~~d~i~vl~~- 996 (1171)
...|||||||||+|||+|+.+|+||+|||||+|||+.+...+++.|+++. .++|||+++|+++. + +.||++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 25799999999999999999999999999999999999999999999875 47999999999984 4 45999999996
Q ss_pred cEEEEecChh
Q 001055 997 GRVLEYDTPE 1006 (1171)
Q Consensus 997 G~i~~~g~~~ 1006 (1171)
|+++..|++.
T Consensus 1097 G~~v~~G~~~ 1106 (1470)
T PLN03140 1097 GQVIYSGPLG 1106 (1470)
T ss_pred CEEEEECCcc
Confidence 8999999864
No 64
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=4.8e-60 Score=579.86 Aligned_cols=380 Identities=27% Similarity=0.433 Sum_probs=338.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 5 QTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVL 84 (1171)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1171)
..++.+.+++..++.++...++.+.+.|.++||++||..+.|+.+..+|++...+.++...+..........+...+..+
T Consensus 310 ~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 389 (709)
T COG2274 310 TLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQL 389 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 35566788999999999999999999999999999999999999999999999888888666666666655554444433
Q ss_pred --HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCC--CCCCCC
Q 001055 85 --VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP--PLTSGL 160 (1171)
Q Consensus 85 --~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~--~~~~~~ 160 (1171)
+.+++||+++++.|.+|.|.++++.++...+..|+..+.+.+..+.+++++.+|+.++++.+++...+.. ..+.-.
T Consensus 390 ~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~ 469 (709)
T COG2274 390 SSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQ 469 (709)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccC
Confidence 4568899999999999999999999999999999999999999999999999999999998765433221 112223
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccc------------eecCc
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA------------VIRGT 228 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~------------~~~~~ 228 (1171)
..|+++|++|+|+.. ++++|+|+||+|++||++||||+||||||||+|+|+|+++|++|.+. .+|+.
T Consensus 470 g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ 548 (709)
T COG2274 470 GEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQ 548 (709)
T ss_pred ceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhh
Confidence 469999999999854 45799999999999999999999999999999999999999998753 25678
Q ss_pred EEEEecCCCCCcccHHHHHhcCCCC-CHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCC
Q 001055 229 VAYVPQVSWIFNATVRDNILFGSAF-EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 307 (1171)
Q Consensus 229 i~~v~Q~~~l~~~Tv~eni~~g~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~ 307 (1171)
||||+|++.+|++||+|||.++.+. +.+++.++++.++.++++..+|.|++|.+||+|.+||||||||++|||||+++|
T Consensus 549 ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P 628 (709)
T COG2274 549 VGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKP 628 (709)
T ss_pred eeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999875 458899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHH
Q 001055 308 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 386 (1171)
Q Consensus 308 ~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 386 (1171)
+|||||||||+||+++++.+.+.+.+. ..|+|+|+|||+++.+..||||++|++|+|+++|+++++++.++.|..++.
T Consensus 629 ~ILlLDEaTSaLD~~sE~~I~~~L~~~-~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~~g~y~~l~~ 706 (709)
T COG2274 629 KILLLDEATSALDPETEAIILQNLLQI-LQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARLYQ 706 (709)
T ss_pred CEEEEeCcccccCHhHHHHHHHHHHHH-hcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHhcChHHHHHh
Confidence 999999999999999999999987654 467999999999999999999999999999999999999998888887764
No 65
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.7e-56 Score=596.89 Aligned_cols=470 Identities=20% Similarity=0.262 Sum_probs=346.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 527 IISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW 606 (1171)
Q Consensus 527 ~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (1171)
...+.+....++..+|++++++|..++.+.++|+++|++++|++.++.... .+..+....+.++..++++.....+..+
T Consensus 366 ~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~~lg~~~l 444 (1622)
T PLN03130 366 MRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQQLGVASL 444 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777888899999999999999999999999999999999987653 3333333333333333332222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 607 AIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANR 686 (1171)
Q Consensus 607 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1171)
+.++++++++++..++.+..++.++..........+.+.|.++|+++||+|++++.+.+.+.+..+...+..........
T Consensus 445 ~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~ 524 (1622)
T PLN03130 445 IGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSA 524 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222333333333444444444444455566778899999999999999999999988887766655444333322222
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 001055 687 WLAIRLEIVGGL-MIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELP 765 (1171)
Q Consensus 687 ~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~ 765 (1171)
+..+.......+ .++.++.+.+. ++..+.. .+..++++...+..++..+......+.....+.+|+.++++.+
T Consensus 525 ~~~~~~~~~~~~v~~~~fg~~~~~-~g~Lt~g-----~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~ 598 (1622)
T PLN03130 525 FNSFILNSIPVLVTVVSFGVFTLL-GGDLTPA-----RAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAE 598 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 222222222111 11122222222 3333322 1222233333444555566666777788899999999998655
Q ss_pred CCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCC-CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC-c
Q 001055 766 SEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER-G 843 (1171)
Q Consensus 766 ~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~-~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~-G 843 (1171)
+..+. ...+. .+..+.|+++|++|+|+++ .+++|+|+||+|++||+++|+||+|||||||+++|+|+++|++ |
T Consensus 599 e~~~~---~~~~~--~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG 673 (1622)
T PLN03130 599 ERVLL---PNPPL--EPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDA 673 (1622)
T ss_pred ccccc---cCCcc--cCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCc
Confidence 43211 00000 1123469999999999742 2479999999999999999999999999999999999999999 9
Q ss_pred eEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCC
Q 001055 844 RILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 923 (1171)
Q Consensus 844 ~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~ 923 (1171)
+|.+ |.+|+||||+|.+|++||||||.++.+.++++++++++.|++.+.++.+|.|++|.++++|.+
T Consensus 674 ~I~l-------------~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~ 740 (1622)
T PLN03130 674 SVVI-------------RGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVN 740 (1622)
T ss_pred eEEE-------------cCeEEEEcCccccCCCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCC
Confidence 9974 458999999999999999999998877888999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHH-HHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEe
Q 001055 924 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ-KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEY 1002 (1171)
Q Consensus 924 LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~-~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~ 1002 (1171)
|||||||||+||||++++|+|||||||||+||+++.+.+. +.++...+++|+|+|||+++.+..||+|++|++|+|++.
T Consensus 741 LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~ 820 (1622)
T PLN03130 741 ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEE 820 (1622)
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEe
Confidence 9999999999999999999999999999999999998775 567766678999999999999999999999999999999
Q ss_pred cChhHHhhcCCChHHHHHHh
Q 001055 1003 DTPEELLSNEGSSFSKMVQS 1022 (1171)
Q Consensus 1003 g~~~el~~~~~~~~~~~~~~ 1022 (1171)
|+++|++++ .+.|.++...
T Consensus 821 Gt~~eL~~~-~~~~~~l~~~ 839 (1622)
T PLN03130 821 GTYEELSNN-GPLFQKLMEN 839 (1622)
T ss_pred CCHHHHHhc-chhHHHHHHh
Confidence 999999875 3566666544
No 66
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=6.4e-59 Score=524.39 Aligned_cols=453 Identities=24% Similarity=0.382 Sum_probs=342.6
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecC
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRG 227 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~ 227 (1171)
+.++++++++.|+ +-.+++||||+|++||++||+|+||+|||||+++|.|.++|++|.+.+ .+.
T Consensus 3 ~~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~ 79 (501)
T COG3845 3 PALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRL 79 (501)
T ss_pred ceEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHc
Confidence 4689999999998 357999999999999999999999999999999999999999987643 233
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCCC------CHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHH
Q 001055 228 TVAYVPQVSWIF-NATVRDNILFGSAF------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300 (1171)
Q Consensus 228 ~i~~v~Q~~~l~-~~Tv~eni~~g~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LA 300 (1171)
.||+|+|++.|+ +.||.|||.+|.+. +.....+.++.......+...| .+....||-|+||||.|-
T Consensus 80 GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp-------~~~V~dLsVG~qQRVEIl 152 (501)
T COG3845 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDP-------DAKVADLSVGEQQRVEIL 152 (501)
T ss_pred CCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCc-------cceeecCCcchhHHHHHH
Confidence 599999999997 68999999999653 2222222222211111122222 344578999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhcch
Q 001055 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNGE 379 (1171)
Q Consensus 301 raL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 379 (1171)
+|||++|++|||||||+.|-|...+.+|+.+.+....|+|||+|||.+.++.. |||+.+|.+|+++..-++ ...
T Consensus 153 KaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~~--~~~--- 227 (501)
T COG3845 153 KALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVDP--VAE--- 227 (501)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeecC--CCC---
Confidence 99999999999999999999999999999988888899999999999999876 799999999997642110 000
Q ss_pred HHHHHHHHhchhhhhhhccccCccccCCCCCCCCCCCCCCCCCccccccccccccchhhhhhhhccccchHHHHHHHHHH
Q 001055 380 LFQKLMENAGKMEEYVEEKEDGETVDNKTSKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEERETGVVSFKVLSRYKDA 459 (1171)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~y~~~ 459 (1171)
. . .++
T Consensus 228 ---------------------------------------------~-------t-----~~e------------------ 232 (501)
T COG3845 228 ---------------------------------------------T-------T-----EEE------------------ 232 (501)
T ss_pred ---------------------------------------------C-------C-----HHH------------------
Confidence 0 0 000
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 460 LGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHD 539 (1171)
Q Consensus 460 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 539 (1171)
T Consensus 233 -------------------------------------------------------------------------------- 232 (501)
T COG3845 233 -------------------------------------------------------------------------------- 232 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 540 AMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAY 619 (1171)
Q Consensus 540 ~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 619 (1171)
+.++
T Consensus 233 ----------------------la~l------------------------------------------------------ 236 (501)
T COG3845 233 ----------------------LAEL------------------------------------------------------ 236 (501)
T ss_pred ----------------------HHHH------------------------------------------------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 620 LYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLM 699 (1171)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 699 (1171)
T Consensus 237 -------------------------------------------------------------------------------- 236 (501)
T COG3845 237 -------------------------------------------------------------------------------- 236 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCC
Q 001055 700 IWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPP 779 (1171)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~ 779 (1171)
+.+.. +..+.+ ..+
T Consensus 237 ---------MvG~~------------------------------------------------v~~~~~---------~~~ 250 (501)
T COG3845 237 ---------MVGRE------------------------------------------------VVLRVV---------KPP 250 (501)
T ss_pred ---------hcCCc------------------------------------------------cccccc---------cCC
Confidence 00000 000000 001
Q ss_pred CCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEec-CCCChH
Q 001055 780 GWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI-AKFGLM 858 (1171)
Q Consensus 780 ~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i-~~~~~~ 858 (1171)
..|....++++|++..-+.. .+.+++|||+|++||++||.|-.|-|-+.|+.+|+|+.+|.+|+|.++|+|+ ...++.
T Consensus 251 ~~pg~~vL~V~~L~v~~~~~-~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~ 329 (501)
T COG3845 251 STPGEVVLEVEDLSVKDRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPR 329 (501)
T ss_pred CCCCCeEEEEeeeEeecCCC-CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHH
Confidence 11223358999999976543 3689999999999999999999999999999999999999999999999997 677888
Q ss_pred HHhh-heEEEcCCcc----cccccHHhhccCCCC----C-CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhH
Q 001055 859 DLRK-ILGIIPQSPV----LFSGTVRFNLDPFSE----H-SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 928 (1171)
Q Consensus 859 ~~r~-~i~~v~Q~~~----lf~~tv~~nl~~~~~----~-~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGq 928 (1171)
.+|+ .++|||.|.. ..+.|+.||+.+... + +..-+..-.-.....+.++.+...- .-......+||||+
T Consensus 330 ~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~-~~~~~~a~~LSGGN 408 (501)
T COG3845 330 ERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRA-PSPDAPARSLSGGN 408 (501)
T ss_pred HHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccC-CCCCcchhhcCCcc
Confidence 8765 4999999983 446699999853211 1 1111111111122344555532221 11233456899999
Q ss_pred HHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChh
Q 001055 929 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPE 1006 (1171)
Q Consensus 929 kqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~ 1006 (1171)
+||+-+||-|.++|++||..+||.|||..+.+.|++.|.+... |+.|++||-+++++.. ||||.||.+|+|+....++
T Consensus 409 qQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~ 488 (501)
T COG3845 409 QQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPE 488 (501)
T ss_pred eehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecccccc
Confidence 9999999999999999999999999999999999999988764 7899999999999877 9999999999999887766
Q ss_pred H
Q 001055 1007 E 1007 (1171)
Q Consensus 1007 e 1007 (1171)
+
T Consensus 489 ~ 489 (501)
T COG3845 489 E 489 (501)
T ss_pred c
Confidence 5
No 67
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.7e-56 Score=597.53 Aligned_cols=471 Identities=19% Similarity=0.238 Sum_probs=346.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 527 IISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLW 606 (1171)
Q Consensus 527 ~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (1171)
...+.+....++..+|++++++|..++++.++|+++|++++|++.++... ..+..+....+.++..++++.....+..+
T Consensus 366 ~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~~~lg~~~l 444 (1495)
T PLN03232 366 GRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLYQQLGVASL 444 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 56677777788889999999999999999999999999999999998764 23333333333333333222221111112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 607 AIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANR 686 (1171)
Q Consensus 607 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (1171)
+.++++++++++..++.+...+.++..........+.+.|.++|+++||+|++++.+.+.+.+..+...+..........
T Consensus 445 ~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~ 524 (1495)
T PLN03232 445 FGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSA 524 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222233333333444444444455566678899999999999999999999988887766655544433322222
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 001055 687 WLAIRLEIVGGLMI-WLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELP 765 (1171)
Q Consensus 687 ~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~ 765 (1171)
+..+.......++. +..+.+.+. ++..+. ..+..++.+...+..++..+............+.+|+.++++.+
T Consensus 525 ~~~~~~~~~~~~~~~~~fg~~~v~-~~~lt~-----g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~ 598 (1495)
T PLN03232 525 FNSFILNSIPVVVTLVSFGVFVLL-GGDLTP-----ARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSE 598 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 22222222111111 122222232 232222 12222333344445556666667777788899999999998765
Q ss_pred CCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCC-CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCce
Q 001055 766 SEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGR 844 (1171)
Q Consensus 766 ~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~-~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~ 844 (1171)
++... ...+ ..+..+.|+++|++|+|+++ .+++|+|+||+|++||+++|+||+|||||||+++|+|+++|++|.
T Consensus 599 ~~~~~---~~~~--~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~ 673 (1495)
T PLN03232 599 ERILA---QNPP--LQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETS 673 (1495)
T ss_pred ccccc---ccCC--cCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCC
Confidence 43211 0000 01123469999999999752 347999999999999999999999999999999999999999987
Q ss_pred EEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCC
Q 001055 845 ILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENF 924 (1171)
Q Consensus 845 I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~L 924 (1171)
+. .+|.+|+||||+|.+|++||||||.++.+.++++++++++.|++.+.++.+|+|++|.++++|.+|
T Consensus 674 i~------------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~L 741 (1495)
T PLN03232 674 SV------------VIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNI 741 (1495)
T ss_pred EE------------EecCcEEEEcCccccccccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCccc
Confidence 63 257789999999999999999999988778889999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHH-HHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEec
Q 001055 925 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQK-TIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 925 SgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~-~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g 1003 (1171)
||||||||+||||++++|+|||||||||+||+++++.+.+ .+....+++|+|+|||+++.+..||+|++|++|+|++.|
T Consensus 742 SGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~G 821 (1495)
T PLN03232 742 SGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEG 821 (1495)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEec
Confidence 9999999999999999999999999999999999998765 466666789999999999999999999999999999999
Q ss_pred ChhHHhhcCCChHHHHHHh
Q 001055 1004 TPEELLSNEGSSFSKMVQS 1022 (1171)
Q Consensus 1004 ~~~el~~~~~~~~~~~~~~ 1022 (1171)
+|+|++++ .+.|.++...
T Consensus 822 t~~eL~~~-~~~~~~l~~~ 839 (1495)
T PLN03232 822 TFAELSKS-GSLFKKLMEN 839 (1495)
T ss_pred CHHHHHhc-chhHHHHHHh
Confidence 99999975 3567666544
No 68
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=5.4e-56 Score=545.96 Aligned_cols=470 Identities=16% Similarity=0.137 Sum_probs=324.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 001055 515 QVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTF 594 (1171)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~ 594 (1171)
..++.+++.++....+.+...++|..++++++++|+.+|+++++|++++|+++|++.+...+. .+..++..++.++..+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~ 139 (547)
T PRK10522 61 LMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSA 139 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 345667788888889999999999999999999999999999999999999999999876443 2334444444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhH---HHHHHHHHHHH
Q 001055 595 VLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAY---DRMADINGKSM 671 (1171)
Q Consensus 595 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~---~~~~~~~~~~~ 671 (1171)
++++++.+...++++.++++.+.+..++.+..++..+......+.+.+.+.|.++|+++++ ++.+ +++.+.+.+..
T Consensus 140 ~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~ 218 (547)
T PRK10522 140 AYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDA 218 (547)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHH
Confidence 5555555544443333333333333333333333334444556778899999999999995 4332 34444454444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 672 DKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENS 751 (1171)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 751 (1171)
+...+.....................+ +++.+.+.... .... .....+.+..+...+..++..+..........
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~ 292 (547)
T PRK10522 219 QEYRHHIIRADTFHLSAVNWSNIMMLG---AIGLVFYMANS-LGWA--DTNVAATYSLTLLFLRTPLLSAVGALPTLLSA 292 (547)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-hhcC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433322211111111111111111111 11111111100 0000 01111112222223445566666666677788
Q ss_pred HHHHHHHHhhhcCCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHH
Q 001055 752 LNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSML 831 (1171)
Q Consensus 752 ~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl 831 (1171)
..+.+|+.++.+.+.+.+.. ...+ .+..+.++++||+|+|+++ +++|+|+||+|+|||++||+||||||||||+
T Consensus 293 ~~a~~ri~~l~~~~~~~~~~--~~~~---~~~~~~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~ 366 (547)
T PRK10522 293 QVAFNKLNKLALAPYKAEFP--RPQA---FPDWQTLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLA 366 (547)
T ss_pred HHHHHHHHHHhccccccccc--cccc---cCcCceEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHHHH
Confidence 89999999886544332110 1100 1112469999999999743 3699999999999999999999999999999
Q ss_pred HHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccC
Q 001055 832 NTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSL 911 (1171)
Q Consensus 832 ~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~ 911 (1171)
++|+|+++|++|+|.+||+++++.+...+|++|+||||++.+|++|+++| ....+++++.++++.+++...+.. +.
T Consensus 367 ~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~ 442 (547)
T PRK10522 367 MLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-ED 442 (547)
T ss_pred HHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cc
Confidence 99999999999999999999999999999999999999999999999998 223456666666666665554432 22
Q ss_pred CcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhhcC
Q 001055 912 GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCD 989 (1171)
Q Consensus 912 gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d 989 (1171)
|. ..|.+||||||||++||||++++|+|||||||||+||+++++.+.+.|.+.. .++|+|+||||++.+..||
T Consensus 443 ~~-----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d 517 (547)
T PRK10522 443 GR-----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHAD 517 (547)
T ss_pred cC-----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCC
Confidence 21 1367899999999999999999999999999999999999999999987654 4799999999999999999
Q ss_pred EEEEEeCcEEEEe-cChhH
Q 001055 990 RILLLDSGRVLEY-DTPEE 1007 (1171)
Q Consensus 990 ~i~vl~~G~i~~~-g~~~e 1007 (1171)
+|++|++|++++. |++.+
T Consensus 518 ~i~~l~~G~i~e~~~~~~~ 536 (547)
T PRK10522 518 RLLEMRNGQLSELTGEERD 536 (547)
T ss_pred EEEEEECCEEEEecCCchh
Confidence 9999999999987 44433
No 69
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=2.6e-57 Score=572.42 Aligned_cols=378 Identities=23% Similarity=0.297 Sum_probs=327.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 5 QTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVL 84 (1171)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1171)
..++.+++++..++.++..+++.+.+.|.++|+++||.++.|+.+..+|.+..++..+...+..........+...+..+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 371 (686)
T TIGR03797 292 TLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVL 371 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888889999999999999999999999999999999999998877777766655555555444443333322
Q ss_pred --HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCc
Q 001055 85 --VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPA 162 (1171)
Q Consensus 85 --~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~ 162 (1171)
+.++++|++.+..|.+|.|.++++..++..+..|+..++..+..+.++..+++|+.++++.+++..............
T Consensus 372 ~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~ 451 (686)
T TIGR03797 372 TSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAKTDPGKLSGA 451 (686)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCCCCCCCce
Confidence 334567888889999999999999999999999999999999999999999999999998754322111111111235
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 230 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 230 (1171)
|+++|++|+|++. ++++|+|+||+|++||++||+|+||||||||+|+|+|+++|++|.+.. +|+.||
T Consensus 452 I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 530 (686)
T TIGR03797 452 IEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLG 530 (686)
T ss_pred EEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccE
Confidence 9999999999743 468999999999999999999999999999999999999999986532 356799
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEE
Q 001055 231 YVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 310 (1171)
Q Consensus 231 ~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vl 310 (1171)
||||+|++|++||+|||.++.+.+++++.++++.+++.++++.+|.|++|.+|++|.+||||||||++|||||+++|++|
T Consensus 531 ~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iL 610 (686)
T TIGR03797 531 VVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRIL 610 (686)
T ss_pred EEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999999877889999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHH
Q 001055 311 IFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 386 (1171)
Q Consensus 311 lLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 386 (1171)
|||||||+||+++++.+.+.+.+. ++|+|+|||+++.+..+|+|++|++|+++++|++++++++.+.|..++.
T Consensus 611 iLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~~~~y~~l~~ 683 (686)
T TIGR03797 611 LFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAREGLFAQLAR 683 (686)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHH
Confidence 999999999999999999987654 5899999999999999999999999999999999999988888887764
No 70
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=4.3e-56 Score=498.99 Aligned_cols=484 Identities=20% Similarity=0.244 Sum_probs=344.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHH
Q 001055 508 YSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQV 587 (1171)
Q Consensus 508 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~ 587 (1171)
...+.++..++..+++.++...+.+...++...+|...++.|..--........ -.|.+.+..++...-...+...
T Consensus 69 al~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~~~g~~~Q~----LrDL~qvR~Fltg~g~~A~fDa 144 (580)
T COG4618 69 ALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRRGSGDGLQP----LRDLDQVRQFLTGTGLTAFFDA 144 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhcCCCccccc----hhhHHHHHHHHcCCCcchhcCC
Confidence 344556677888999999999999999999999999988766553322212211 1355555544332111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHH
Q 001055 588 SQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADIN 667 (1171)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~ 667 (1171)
--.-..+.+++.+.++..++.+.-.++++...++-....++--+...+.......+...+.++.++|+++++.....+.+
T Consensus 145 PW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW 224 (580)
T COG4618 145 PWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRW 224 (580)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHH
Confidence 11111223333444444443333333322222222222222222333334445567778999999999999877666666
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHH---HHHHH
Q 001055 668 GKSMDKNIRY----TLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNIT---SLLTA 740 (1171)
Q Consensus 668 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~---~~~~~ 740 (1171)
.+....+... ...+..........-..+...+...++++.+ .+ . .+.|.+++-+.... .++..
T Consensus 225 ~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi-~g-e--------~t~G~mIA~SIl~gRaLaPid~ 294 (580)
T COG4618 225 GRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVI-KG-E--------ITPGMMIAGSILSGRALAPIDL 294 (580)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEE-cC-c--------CCcchhhHHHHHhhhhhccHHH
Confidence 5544433332 2222221111111111122222222222222 21 1 12233333333322 34444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEE
Q 001055 741 VLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIV 820 (1171)
Q Consensus 741 ~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~iv 820 (1171)
....|..+.....+..|+.+++...++.... . +....++.+.++++++.=++..+++|+|+||++.+||-+|||
T Consensus 295 aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~----m--~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgII 368 (580)
T COG4618 295 AIANWKQFVAARQSYKRLNELLAELPAAAER----M--PLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGII 368 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccccCC----C--CCCCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEE
Confidence 5566667777888999999998655443211 1 111235789999999977766679999999999999999999
Q ss_pred CCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCC-CCCHHHHHHHHHH
Q 001055 821 GRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALER 899 (1171)
Q Consensus 821 G~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~ 899 (1171)
||||||||||.|+|.|.++|.+|.|++||-|+.+++++++=++|||+||+..||+|||+|||.-|. +.+++.+.++++.
T Consensus 369 GPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~l 448 (580)
T COG4618 369 GPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARL 448 (580)
T ss_pred CCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998665 5677889999999
Q ss_pred hcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEE
Q 001055 900 AHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLII 978 (1171)
Q Consensus 900 ~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~v 978 (1171)
+++||.|.++|+||||.+++.|..||||||||++|||||+.+|.+++||||-|+||.+-|+.+.++|.+.. +|+|+|+|
T Consensus 449 AgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvvi 528 (580)
T COG4618 449 AGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVI 528 (580)
T ss_pred cChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999998876 58999999
Q ss_pred ecChhhhhhcCEEEEEeCcEEEEecChhHHhhc
Q 001055 979 AHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 979 tH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
|||.+.+..+|+|++|++|++..+|+.+|++++
T Consensus 529 aHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 529 AHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred ecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 999999999999999999999999999999864
No 71
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=9e-57 Score=570.13 Aligned_cols=376 Identities=26% Similarity=0.368 Sum_probs=325.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 001055 6 TFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVL- 84 (1171)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~- 84 (1171)
.++.++.++..++.++..+++.+.+.|.++++++||.+++|+.+.++|.+...+..+...+..........+...+..+
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 390 (710)
T TIGR03796 311 QLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLN 390 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777888888889999999999999999999999999999999988888877666555555444433333322
Q ss_pred -HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCC------CCC-
Q 001055 85 -VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPN------PPL- 156 (1171)
Q Consensus 85 -~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~------~~~- 156 (1171)
+.++++|++.+..|.+|.|.++++..++..+..|+..++..+..+.++..+++|+.++++.+++..... ...
T Consensus 391 ~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~ 470 (710)
T TIGR03796 391 SALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEP 470 (710)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccccc
Confidence 345667889999999999999999999999999999999999999999999999999998754322111 011
Q ss_pred -CCCCCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-----------
Q 001055 157 -TSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------- 224 (1171)
Q Consensus 157 -~~~~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------- 224 (1171)
......|+++|++|+|+. .++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+..
T Consensus 471 ~~~~~~~I~~~~vsf~y~~-~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~ 549 (710)
T TIGR03796 471 SPRLSGYVELRNITFGYSP-LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPRE 549 (710)
T ss_pred CCCCCCeEEEEEEEEecCC-CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHH
Confidence 111236999999999984 3468999999999999999999999999999999999999999986532
Q ss_pred -ecCcEEEEecCCCCCcccHHHHHhcCC-CCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHH
Q 001055 225 -IRGTVAYVPQVSWIFNATVRDNILFGS-AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 302 (1171)
Q Consensus 225 -~~~~i~~v~Q~~~l~~~Tv~eni~~g~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAra 302 (1171)
+++.||||||+|++|++||+|||.++. ..+++++.++++.+++.++++.+|+|++|.+|++|.+|||||||||+||||
T Consensus 550 ~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARa 629 (710)
T TIGR03796 550 VLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARA 629 (710)
T ss_pred HHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999999875 467889999999999999999999999999999999999999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHH
Q 001055 303 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQ 382 (1171)
Q Consensus 303 L~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 382 (1171)
|+++|+++|||||||+||+++++.+.+.+.+ .++|+|+|||+++.+..||||++|++|+++++|+++++++..+.|+
T Consensus 630 ll~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~~~~y~ 706 (710)
T TIGR03796 630 LVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGGAYA 706 (710)
T ss_pred HhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHcCCcHH
Confidence 9999999999999999999999999998764 4799999999999999999999999999999999999998877777
Q ss_pred HHH
Q 001055 383 KLM 385 (1171)
Q Consensus 383 ~~~ 385 (1171)
+++
T Consensus 707 ~l~ 709 (710)
T TIGR03796 707 RLI 709 (710)
T ss_pred HHh
Confidence 654
No 72
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-56 Score=518.82 Aligned_cols=383 Identities=25% Similarity=0.417 Sum_probs=326.5
Q ss_pred CcchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 001055 1 MFPVQTFIISR-MQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQ----NVRNDELSWFRKAQFLAACNS 75 (1171)
Q Consensus 1 ~~p~~~~~~~~-~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~----~~r~~e~~~~~~~~~~~~~~~ 75 (1171)
++|+++++..+ .++..++++....+-.+.+-+.++|+.|+|.|+..+...+++. +.|+..++..|.. ++++...
T Consensus 152 lIPlfMilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriA-flSs~vL 230 (559)
T COG4988 152 LIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIA-FLSSAVL 230 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 36787777665 5677888899999999999999999999999999987777664 4677777776554 4455444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCC
Q 001055 76 FILNSIPVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPP 155 (1171)
Q Consensus 76 ~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~ 155 (1171)
-++.+..+.++++.+|..++..|+++....++++.+...+..|++.+...+|.-.++..+.+.+..|++.+........+
T Consensus 231 effa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~ 310 (559)
T COG4988 231 EFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEK 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccc
Confidence 44455555556666665544438999999999999999999999999999999999999999999999877643222211
Q ss_pred -CCCCCCc--EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce--------
Q 001055 156 -LTSGLPA--ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------- 224 (1171)
Q Consensus 156 -~~~~~~~--i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------- 224 (1171)
.....+. ++.+|++|.|+++ +++++|+||++++|++++|||+||||||||+++|+|+.+|++|.+..
T Consensus 311 ~~~~~~~~~ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l 388 (559)
T COG4988 311 AEVANEPPIEISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDL 388 (559)
T ss_pred cccccCCCceeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCcccccc
Confidence 1122223 4555999999853 48999999999999999999999999999999999999999886543
Q ss_pred ----ecCcEEEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHH
Q 001055 225 ----IRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 299 (1171)
Q Consensus 225 ----~~~~i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~L 299 (1171)
++++++||||+|.+|.+|++|||.++++ .+++++.++++.+++.++++. |+|.+|.+|++|.+|||||+|||+|
T Consensus 389 ~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaL 467 (559)
T COG4988 389 SPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLAL 467 (559)
T ss_pred CHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHH
Confidence 4567999999999999999999999976 567899999999999999999 9999999999999999999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcch
Q 001055 300 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGE 379 (1171)
Q Consensus 300 AraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 379 (1171)
||||+++++++||||||+|||+++++.+.+.+.+.. +++|+++||||++.+..+|+|++|++|+++++|+++++..+++
T Consensus 468 ARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~-~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~ 546 (559)
T COG4988 468 ARALLSPASLLLLDEPTAHLDAETEQIILQALQELA-KQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQG 546 (559)
T ss_pred HHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHH-hCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCc
Confidence 999999999999999999999999999998776654 5699999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 001055 380 LFQKLMENA 388 (1171)
Q Consensus 380 ~~~~~~~~~ 388 (1171)
.|++++..+
T Consensus 547 ~y~~l~~~q 555 (559)
T COG4988 547 LYANLLKQQ 555 (559)
T ss_pred HHHHHHHHH
Confidence 999998653
No 73
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.2e-56 Score=555.48 Aligned_cols=374 Identities=24% Similarity=0.362 Sum_probs=301.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 001055 7 FIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSW----FRKAQFLAACNSFILNSIP 82 (1171)
Q Consensus 7 ~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~----~~~~~~~~~~~~~~~~~~~ 82 (1171)
++.+++++..++.++..++..+.+.|.++|+++||.|++|+.+.+++.+..++..+. .+.......+..++.. +.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 260 (588)
T PRK11174 182 LVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAFLSSAVLEFFAS-IS 260 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 345667777888888999999999999999999999999999988886544433333 2222222222222211 11
Q ss_pred HHHHHHHHHHHHHhcCCCCHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCC
Q 001055 83 VLVTVVSFGMFTLLGGDLTPA---------RAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPN 153 (1171)
Q Consensus 83 ~~~~~~~~g~~~~~~~~l~~~---------~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~ 153 (1171)
.++ ++.++.+.+. |.+|.| .+++++.+...+..|+..++..+..+.++..+++||.++++.+++.....
T Consensus 261 ~~~-~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~ 338 (588)
T PRK11174 261 IAL-VAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQQG 338 (588)
T ss_pred HHH-HHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC
Confidence 212 2223333333 555544 34555566777889999999999999999999999999998764321111
Q ss_pred C-CCC-CCCCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------
Q 001055 154 P-PLT-SGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------- 224 (1171)
Q Consensus 154 ~-~~~-~~~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------- 224 (1171)
. ..+ .....|+++|++|.|++ ++++|+|+||++++|+++|||||||||||||+++|+|++ |++|.+..
T Consensus 339 ~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~ 415 (588)
T PRK11174 339 EKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRE 415 (588)
T ss_pred ccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEeccc
Confidence 1 111 12235999999987753 367999999999999999999999999999999999999 88876532
Q ss_pred -----ecCcEEEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHH
Q 001055 225 -----IRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 298 (1171)
Q Consensus 225 -----~~~~i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~ 298 (1171)
+++.|+||||+|++|++||+|||.+|.+ .+++++.++++.|++++++..+|+|++|.+|++|.+||||||||++
T Consensus 416 ~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRia 495 (588)
T PRK11174 416 LDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLA 495 (588)
T ss_pred CCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHH
Confidence 3457999999999999999999999954 7889999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcc
Q 001055 299 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNG 378 (1171)
Q Consensus 299 LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 378 (1171)
|||||+++|+|||||||||+||+++++.+.+.+.+. .+++|+|+|||+++.+..+|+|++|++|+++++|+++++.++.
T Consensus 496 lARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~-~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~~ 574 (588)
T PRK11174 496 LARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAA-SRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAG 574 (588)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH-hCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhcc
Confidence 999999999999999999999999999999876554 4689999999999999999999999999999999999999988
Q ss_pred hHHHHHHHH
Q 001055 379 ELFQKLMEN 387 (1171)
Q Consensus 379 ~~~~~~~~~ 387 (1171)
+.|++++..
T Consensus 575 ~~y~~l~~~ 583 (588)
T PRK11174 575 GLFATLLAH 583 (588)
T ss_pred hHHHHHHHH
Confidence 888888754
No 74
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=3.6e-56 Score=561.63 Aligned_cols=376 Identities=24% Similarity=0.354 Sum_probs=316.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 001055 6 TFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIP--V 83 (1171)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~--~ 83 (1171)
.++.+++++..++.++..++..+.+.|.++|+++||.|++|+.+.+++.+..++..+..++..........+...+. .
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (711)
T TIGR00958 319 KVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLI 398 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777888888889999999999999999999999999888887766655554444433333332222222 1
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCC-CCCCc
Q 001055 84 LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLT-SGLPA 162 (1171)
Q Consensus 84 ~~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~-~~~~~ 162 (1171)
.+.++.+|.+.+..|.+|++.+++++.+...+..|+..++..+..+.++..+++||.++++.+++...+....+ +....
T Consensus 399 ~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~ 478 (711)
T TIGR00958 399 QVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPLNLEGL 478 (711)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCe
Confidence 23445678888899999999999999999999999999999999999999999999999987653221111111 12235
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 230 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 230 (1171)
|+++|++|+|++.+++++|+|+||++++||+++||||||||||||+++|+|+++|++|.+.. ++++|+
T Consensus 479 I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~ 558 (711)
T TIGR00958 479 IEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVA 558 (711)
T ss_pred EEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhce
Confidence 99999999998544578999999999999999999999999999999999999999986532 345799
Q ss_pred EEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCE
Q 001055 231 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 309 (1171)
Q Consensus 231 ~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~v 309 (1171)
||||+|++|++||+|||.+|.+ .+++++.++++.+++.++++.+|+|++|.+|++|.+||||||||++|||||+++|+|
T Consensus 559 ~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~I 638 (711)
T TIGR00958 559 LVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRV 638 (711)
T ss_pred EEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999999854 567889999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHH
Q 001055 310 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 384 (1171)
Q Consensus 310 llLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 384 (1171)
+|||||||+||+++++.+.+ .. ..+++|+|+|||+++.+..+|+|++|++|+|+++|++++++++.+.|+++
T Consensus 639 LILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~y~~l 710 (711)
T TIGR00958 639 LILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHL 710 (711)
T ss_pred EEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCchHhc
Confidence 99999999999999999987 22 23689999999999999999999999999999999999998877666654
No 75
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=5.1e-56 Score=562.64 Aligned_cols=377 Identities=25% Similarity=0.389 Sum_probs=322.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 001055 6 TFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIP--V 83 (1171)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~--~ 83 (1171)
.++.++.++..++.++..+++.+.+.|.++|+++||.|++|+.+..++.+...+..+...+..........+...+. .
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (708)
T TIGR01193 313 ILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLIL 392 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677888888999999999999999999999999999999999988777666554444433333333222222 1
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCC--CCCCCCCC
Q 001055 84 LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPN--PPLTSGLP 161 (1171)
Q Consensus 84 ~~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~--~~~~~~~~ 161 (1171)
.+.++++|++.+..|.+|+|.++++..++..+..|+..+...+..+.+++.+++|+.++++.+++...+. ........
T Consensus 393 ~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~ 472 (708)
T TIGR01193 393 NVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNG 472 (708)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCCCCCC
Confidence 2345678999999999999999999999999999999999999999999999999999998765322111 11112223
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 229 (1171)
.|+++|++|+|+. ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|.+.. +|+.|
T Consensus 473 ~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 550 (708)
T TIGR01193 473 DIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFI 550 (708)
T ss_pred cEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHhe
Confidence 6999999999973 468999999999999999999999999999999999999999986532 35579
Q ss_pred EEEecCCCCCcccHHHHHhcCC--CCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCC
Q 001055 230 AYVPQVSWIFNATVRDNILFGS--AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 307 (1171)
Q Consensus 230 ~~v~Q~~~l~~~Tv~eni~~g~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~ 307 (1171)
|||||+|++|++||+|||.++. ..+++++.++++.+++.+++..+|.|++|.+|++|.+||||||||++|||||+++|
T Consensus 551 ~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p 630 (708)
T TIGR01193 551 NYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDS 630 (708)
T ss_pred EEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999983 45778899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHH
Q 001055 308 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 386 (1171)
Q Consensus 308 ~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 386 (1171)
++||||||||+||+++++.+.+.+.+. +++|+|+|||+++.+..||+|++|++|+++++|+++++++..+.|+.++.
T Consensus 631 ~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~~~~y~~l~~ 707 (708)
T TIGR01193 631 KVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDRNGFYASLIH 707 (708)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhcCCcHHHHhh
Confidence 999999999999999999999988653 57999999999999999999999999999999999999988777877653
No 76
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=9.8e-56 Score=558.85 Aligned_cols=370 Identities=28% Similarity=0.429 Sum_probs=321.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 001055 6 TFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPV-- 83 (1171)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~-- 83 (1171)
.++.++.++..++.++..+++.+.+.|.++|+++||.|++|+.+.+++.+..++..+...+..........+...+..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (694)
T TIGR03375 303 LLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLV 382 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788889999999999999999999999999999999999999998888777766666555554433333322
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCC--CCCCCC
Q 001055 84 LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPP--LTSGLP 161 (1171)
Q Consensus 84 ~~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~--~~~~~~ 161 (1171)
.+.++++|++.+..|.+|+|.+++++.++..+..|+..++..+..+..+.++++|+.++++.+++....... .+....
T Consensus 383 ~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~ 462 (694)
T TIGR03375 383 SVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFLHRPRLQG 462 (694)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCccc
Confidence 234566788999999999999999999999999999999999999999999999999999876532211111 111223
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 229 (1171)
.|+++|++|+|++ .++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+.. ++..|
T Consensus 463 ~I~~~~vsf~Y~~-~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i 541 (694)
T TIGR03375 463 EIEFRNVSFAYPG-QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNI 541 (694)
T ss_pred eEEEEEEEEEeCC-CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhcc
Confidence 6999999999974 3468999999999999999999999999999999999999999986532 35679
Q ss_pred EEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCC
Q 001055 230 AYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 308 (1171)
Q Consensus 230 ~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~ 308 (1171)
+||||+|++|++||+|||.++.+ .+++++.++++.+++.++++.+|+|++|.+|++|.+||||||||++|||||+++|+
T Consensus 542 ~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~ 621 (694)
T TIGR03375 542 GYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPP 621 (694)
T ss_pred EEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999975 67899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001055 309 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 309 vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
++|||||||+||+++++.+.+.+.+. .+++|+|+|||+++.+..||+|++|++|+++++|+++++++.
T Consensus 622 iliLDE~Ts~LD~~te~~i~~~l~~~-~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 622 ILLLDEPTSAMDNRSEERFKDRLKRW-LAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHH-hCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 99999999999999999999977654 357999999999999999999999999999999999998653
No 77
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.7e-55 Score=547.34 Aligned_cols=380 Identities=24% Similarity=0.319 Sum_probs=322.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 001055 6 TFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPV-- 83 (1171)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~-- 83 (1171)
.++.+++++..++.++..++..+.+.|.++|+++||.|++|+.+.+++.+..++..+...+..........+...+..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (582)
T PRK11176 183 RVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLA 262 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777788888888999999999999999999999999999998877766666555544444433333333222
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCcE
Q 001055 84 LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAI 163 (1171)
Q Consensus 84 ~~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i 163 (1171)
.+.++++|.+.+..|.++++.+++++.++..+..|+..+...+..+..++.+++|+.++++.+++........++....|
T Consensus 263 ~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~i 342 (582)
T PRK11176 263 LAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDEGKRVIERAKGDI 342 (582)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCCCCCCCeE
Confidence 23345567788888999999999999999999999999999999999999999999999976543221111111222359
Q ss_pred EEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEEE
Q 001055 164 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAY 231 (1171)
Q Consensus 164 ~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~ 231 (1171)
+++|++|+|++ .++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+.. .++.|+|
T Consensus 343 ~~~~vsf~y~~-~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~ 421 (582)
T PRK11176 343 EFRNVTFTYPG-KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVAL 421 (582)
T ss_pred EEEEEEEecCC-CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceE
Confidence 99999999974 3468999999999999999999999999999999999999999886532 3457999
Q ss_pred EecCCCCCcccHHHHHhcCCC--CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCE
Q 001055 232 VPQVSWIFNATVRDNILFGSA--FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 309 (1171)
Q Consensus 232 v~Q~~~l~~~Tv~eni~~g~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~v 309 (1171)
|||+|.+|++||+|||.+|.+ .++++++++++.+++.++++.+|+|++|.+|++|.+||||||||++|||||+++|+|
T Consensus 422 v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~i 501 (582)
T PRK11176 422 VSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPI 501 (582)
T ss_pred EccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCE
Confidence 999999999999999999853 578899999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHHH
Q 001055 310 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 387 (1171)
Q Consensus 310 llLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 387 (1171)
+|||||||+||+++++.+++.+.+. .+++|+|+|||+++.++.||+|++|++|++++.|+++++.+..+.|++++..
T Consensus 502 lilDEptsaLD~~t~~~i~~~l~~~-~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~~~y~~l~~~ 578 (582)
T PRK11176 502 LILDEATSALDTESERAIQAALDEL-QKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGVYAQLHKM 578 (582)
T ss_pred EEEECccccCCHHHHHHHHHHHHHH-hCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCCChHHHHHHH
Confidence 9999999999999999999887654 3579999999999999999999999999999999999999888888888753
No 78
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1e-52 Score=563.84 Aligned_cols=530 Identities=18% Similarity=0.250 Sum_probs=370.2
Q ss_pred HHHHHHHHHHHHhHHhhhhhhccccccCCCCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 470 LLCYFLTETLRVSSSTWLSYWTDQSSLKTHGP---LFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSIL 546 (1171)
Q Consensus 470 ~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll 546 (1171)
+++.++...+....|..+...++......... ..+...++++.++..++.....+.....+.+....+...+|+|++
T Consensus 323 ~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L 402 (1522)
T TIGR00957 323 FCFKAIHDLMMFIGPQILSLLIRFVNDPMAPDWQGYFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAVYRKAL 402 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555566666655544321111111 112222333333444444444555677888899999999999999
Q ss_pred cCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 547 RAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTA 626 (1171)
Q Consensus 547 ~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~ 626 (1171)
++|..+++..+.|+++|+++.|+..+.... ..+..+....+.++..++++.....+..++.+.++++++++.....+..
T Consensus 403 ~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~~~~~~~ 481 (1522)
T TIGR00957 403 VITNSARKSSTVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMKT 481 (1522)
T ss_pred hCChhhcCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987643 2333444444444433333332222222222222223333333344444
Q ss_pred HHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 001055 627 REVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWL-TAT 705 (1171)
Q Consensus 627 ~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ 705 (1171)
+..++..........+.+.|.++|+++||.|++++.+.+.+.+..+...+..........+..+.......++.++ .+.
T Consensus 482 ~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 561 (1522)
T TIGR00957 482 KTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCTPFLVALITFAV 561 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555666778999999999999999999998888877666554443332222222221111111111111 112
Q ss_pred HHHHh-cCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCCC
Q 001055 706 FAVVQ-NGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSS 784 (1171)
Q Consensus 706 ~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~ 784 (1171)
+.+.. +...+...+| ..+++...+..++..+......+.....+.+|+.++++.+++++...+.....+ ...
T Consensus 562 ~~~~~~~~~l~~~~~f-----~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~--~~~ 634 (1522)
T TIGR00957 562 YVTVDENNILDAEKAF-----VSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKP--GEG 634 (1522)
T ss_pred HHHhcCCCCcCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCC--CCC
Confidence 22222 2222222222 122233334456666777777788899999999999976544321111000000 112
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhhe
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 864 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 864 (1171)
+.++++|++|+|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 635 ~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-------------~i 701 (1522)
T TIGR00957 635 NSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SV 701 (1522)
T ss_pred CcEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------EE
Confidence 36999999999975445799999999999999999999999999999999999999999999987 59
Q ss_pred EEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001055 865 GIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 944 (1171)
Q Consensus 865 ~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 944 (1171)
+||||+|.+|++||+|||.+..+..+++..++++.+++.+.++.+|.|++|.+++.|.+||||||||++||||++++|+|
T Consensus 702 ~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~i 781 (1522)
T TIGR00957 702 AYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADI 781 (1522)
T ss_pred EEEcCCccccCCcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987666667778888999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHH---HcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHHHH
Q 001055 945 LVLDEATAAVDVRTDALIQKTIRE---EFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1021 (1171)
Q Consensus 945 LlLDEpTs~LD~~t~~~i~~~l~~---~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~ 1021 (1171)
+|||||||+||+.+++.+.+.+.+ ..+++|+|+|||+++.+..||+|++|++|+|++.|+++++++.. +.|.++..
T Consensus 782 llLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~-~~~~~l~~ 860 (1522)
T TIGR00957 782 YLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRD-GAFAEFLR 860 (1522)
T ss_pred EEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcc-hhHHHHHH
Confidence 999999999999999999999864 34689999999999999999999999999999999999998753 45666554
No 79
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=2.4e-54 Score=536.21 Aligned_cols=379 Identities=27% Similarity=0.373 Sum_probs=324.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 001055 6 TFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPV-- 83 (1171)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~-- 83 (1171)
.++.++.++..++..+..+++.+.+.|+++|+++||.++.++.+..++.+..++..+...+..........+...+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (571)
T TIGR02203 172 RRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLA 251 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666778888899999999999999999999999999999999999887777666555544444443333333222
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCcE
Q 001055 84 LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAI 163 (1171)
Q Consensus 84 ~~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i 163 (1171)
.+.++++|.+.+..|.+|++.+++++.++..+..|+..+.+.+..+.+++++++|+.++++.+++.........+....|
T Consensus 252 ~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~i 331 (571)
T TIGR02203 252 LAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIERARGDV 331 (571)
T ss_pred HHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCeE
Confidence 23345678888889999999999999999999999999999999999999999999999986554221111111122359
Q ss_pred EEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEEE
Q 001055 164 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAY 231 (1171)
Q Consensus 164 ~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~ 231 (1171)
+++|++|+|++. ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+.. .++.|+|
T Consensus 332 ~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~ 410 (571)
T TIGR02203 332 EFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVAL 410 (571)
T ss_pred EEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceE
Confidence 999999999753 468999999999999999999999999999999999999999987543 3456999
Q ss_pred EecCCCCCcccHHHHHhcCC--CCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCE
Q 001055 232 VPQVSWIFNATVRDNILFGS--AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 309 (1171)
Q Consensus 232 v~Q~~~l~~~Tv~eni~~g~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~v 309 (1171)
|||+|++|++|++|||.++. +.+++++.++++.+++.+++..+|+|.+|.+|++|.+||||||||++||||++++|+|
T Consensus 411 v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~i 490 (571)
T TIGR02203 411 VSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPI 490 (571)
T ss_pred EccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999985 4678899999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHH
Q 001055 310 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 386 (1171)
Q Consensus 310 llLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 386 (1171)
++||||||+||+++++.+.+.+.+. .+++|+|+|||+.+.+..||+|++|++|++++.|+++++.+..+.|++...
T Consensus 491 llLDEpts~LD~~~~~~i~~~L~~~-~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~ 566 (571)
T TIGR02203 491 LILDEATSALDNESERLVQAALERL-MQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLARNGLYAQLHN 566 (571)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHH-hCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHcCCHHHHHHH
Confidence 9999999999999999999887654 467999999999999999999999999999999999999877777777544
No 80
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=3.5e-54 Score=532.88 Aligned_cols=379 Identities=27% Similarity=0.432 Sum_probs=321.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 001055 7 FIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIP--VL 84 (1171)
Q Consensus 7 ~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~--~~ 84 (1171)
++.++.++..++..+..++..+.+.|.++++++||.|+.++...+++.+..+...+...+.....+....+...+. ..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (567)
T COG1132 171 LLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGT 250 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567788888888899999999999999999999999988777766555544443333333333322222211 22
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCcEE
Q 001055 85 VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAIS 164 (1171)
Q Consensus 85 ~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~ 164 (1171)
+.++.+|.+.+..+.++++.+.+++.++..+..|+..+...+..+..+..+++|+.++++.++....+..........|+
T Consensus 251 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~I~ 330 (567)
T COG1132 251 VLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDPLKDTIGSIE 330 (567)
T ss_pred HHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCeEE
Confidence 34456777888889999999999999999999999999999999999999999999999985532211111122223599
Q ss_pred EEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEEEE
Q 001055 165 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYV 232 (1171)
Q Consensus 165 ~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v 232 (1171)
++|++|+|++ ++++|+|+||++++||++|||||||||||||+++|+|+++|++|.+.. +|+.|+||
T Consensus 331 f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V 408 (567)
T COG1132 331 FENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIV 408 (567)
T ss_pred EEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEE
Confidence 9999999974 468999999999999999999999999999999999999999887643 35679999
Q ss_pred ecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEE
Q 001055 233 PQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 311 (1171)
Q Consensus 233 ~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vll 311 (1171)
||+|++|++||+|||.+|.+ .+++++.++++.+++++++..+|+|++|.+|++|.+||||||||++||||++++|++|+
T Consensus 409 ~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILI 488 (567)
T COG1132 409 SQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILI 488 (567)
T ss_pred cccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999987 57889999999999999999999999999999999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHHHh
Q 001055 312 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 388 (1171)
Q Consensus 312 LDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 388 (1171)
||||||+||+++++.+.+.+.+.. +++|+|+|+|+++.+..||+|++|++|++++.|++++++++.+.|++++...
T Consensus 489 LDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~l~~~~ 564 (567)
T COG1132 489 LDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQAQ 564 (567)
T ss_pred EeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHHh
Confidence 999999999999999999876444 6789999999999999999999999999999999999999999999998654
No 81
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=8.9e-54 Score=528.39 Aligned_cols=376 Identities=21% Similarity=0.341 Sum_probs=313.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 001055 7 FIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPV--L 84 (1171)
Q Consensus 7 ~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~--~ 84 (1171)
++.++.++..++.++..++..+.+.|.++|+++||.|+.|+.+.+++.+..++..+...+.....+....+...+.. .
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (574)
T PRK11160 180 LFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQALMILANGLTV 259 (574)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788888888999999999999999999999999999999887776666555544444443333332222 1
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCC-CCCCCCCCCc
Q 001055 85 VTVVSFGMFTLLGGDLTPARAFTSLSLFAVL-RFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLP-NPPLTSGLPA 162 (1171)
Q Consensus 85 ~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~-~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~-~~~~~~~~~~ 162 (1171)
+.++++|.+. ..|.++++.+++++.+.... ..|+..++..+..+.++..+++||.++++.+++...+ .+........
T Consensus 260 ~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~ 338 (574)
T PRK11160 260 VLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTFPTTSTAAADQVS 338 (574)
T ss_pred HHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcccCCCCCCCe
Confidence 2334566666 47889999988877665443 4578888999999999999999999999875432211 1111122346
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 230 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 230 (1171)
|+++|++|+|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. +++.|+
T Consensus 339 i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 417 (574)
T PRK11160 339 LTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAIS 417 (574)
T ss_pred EEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhhee
Confidence 9999999999742 357999999999999999999999999999999999999999986532 345699
Q ss_pred EEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCE
Q 001055 231 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 309 (1171)
Q Consensus 231 ~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~v 309 (1171)
||||+|++|++|++|||.++.+ .+++++.++++.+++.++++. |+|++|.+|++|.+||||||||++|||||+++|++
T Consensus 418 ~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~~i 496 (574)
T PRK11160 418 VVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPL 496 (574)
T ss_pred EEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999999864 577889999999999999999 99999999999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHH
Q 001055 310 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 386 (1171)
Q Consensus 310 llLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 386 (1171)
+||||||++||+++++.+.+.+.+. .+++|+|+|||+++.+..||+|++|++|++++.|++++++++.+.|++++.
T Consensus 497 lilDE~ts~lD~~t~~~i~~~l~~~-~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~g~y~~l~~ 572 (574)
T PRK11160 497 LLLDEPTEGLDAETERQILELLAEH-AQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQGRYYQLKQ 572 (574)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHH-cCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhcCcHHHHHHh
Confidence 9999999999999999999877654 358999999999999999999999999999999999999999888888764
No 82
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=9.2e-54 Score=532.14 Aligned_cols=374 Identities=21% Similarity=0.299 Sum_probs=310.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 001055 9 ISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAAC----NSFILNSIPVL 84 (1171)
Q Consensus 9 ~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~----~~~~~~~~~~~ 84 (1171)
.++.++..++..+..++..+.+.|.++|+++||.|+.|+.+.+++.+..++..+...+....... ...+...+..+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (592)
T PRK10790 186 QRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILC 265 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666777778888999999999999999999999999887666554442222222221 11111111112
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCcEE
Q 001055 85 VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAIS 164 (1171)
Q Consensus 85 ~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~ 164 (1171)
+.++.+| + +..|.++.+.+++++.++..+..|+..++..+..+.++..+++||.++++.+++..... ........|+
T Consensus 266 ~~~~~~~-~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~-~~~~~~~~i~ 342 (592)
T PRK10790 266 GLLMLFG-F-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGND-DRPLQSGRID 342 (592)
T ss_pred HHHHHHH-H-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCC-ccCCCCCeEE
Confidence 2222233 3 46899999999999999999999999999999999999999999999997654321111 1111223599
Q ss_pred EEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEEEE
Q 001055 165 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYV 232 (1171)
Q Consensus 165 ~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v 232 (1171)
++|++|+|+. ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+.. +++.|+||
T Consensus 343 ~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v 420 (592)
T PRK10790 343 IDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMV 420 (592)
T ss_pred EEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEE
Confidence 9999999973 357999999999999999999999999999999999999999886532 34679999
Q ss_pred ecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEE
Q 001055 233 PQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIF 312 (1171)
Q Consensus 233 ~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllL 312 (1171)
||+|.+|++|++|||.++.+.+++++.++++.+++.++++.+|+|++|.+|++|.+||||||||++|||||+++|+|+||
T Consensus 421 ~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illl 500 (592)
T PRK10790 421 QQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILIL 500 (592)
T ss_pred ccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999999987788999999999999999999999999999999999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHHHh
Q 001055 313 DDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 388 (1171)
Q Consensus 313 DEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 388 (1171)
|||||+||+++++.+.+.+.+. .+++|+|+|||+++.+..+|+|++|++|++++.|++++++++.+.|+.+...+
T Consensus 501 DEpts~LD~~t~~~i~~~l~~~-~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~~~y~~l~~~~ 575 (592)
T PRK10790 501 DEATANIDSGTEQAIQQALAAV-REHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQGRYWQMYQLQ 575 (592)
T ss_pred eCCcccCCHHHHHHHHHHHHHH-hCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999877654 35799999999999999999999999999999999999998888888887643
No 83
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1e-53 Score=525.76 Aligned_cols=368 Identities=23% Similarity=0.324 Sum_probs=312.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 001055 7 FIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPV--L 84 (1171)
Q Consensus 7 ~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~--~ 84 (1171)
++.++.++..++.++..+++.+.+.|.++|+++||.|++|+.+.+++.+..++..+..++.....+....+...+.. .
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (544)
T TIGR01842 160 LNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQ 239 (544)
T ss_pred HhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677788888999999999999999999999999999999999887777666555444444433333222221 2
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCcEE
Q 001055 85 VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAIS 164 (1171)
Q Consensus 85 ~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~ 164 (1171)
+.++++|.+.+..|.+|++.+++++.++..+..|+..++..+..+..+..+++||.++++.+++... ....+.....|+
T Consensus 240 ~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~-~~~~~~~~~~i~ 318 (544)
T TIGR01842 240 SLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP-AMPLPEPEGHLS 318 (544)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC-CCCCCCCCCeEE
Confidence 3445688888999999999999999999999999999999999999999999999999976543221 111111223599
Q ss_pred EEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEEEE
Q 001055 165 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYV 232 (1171)
Q Consensus 165 ~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v 232 (1171)
++|++|+|+. .++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..++||
T Consensus 319 ~~~v~~~y~~-~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v 397 (544)
T TIGR01842 319 VENVTIVPPG-GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYL 397 (544)
T ss_pred EEEEEEEcCC-CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEe
Confidence 9999999974 2468999999999999999999999999999999999999999986532 24569999
Q ss_pred ecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEE
Q 001055 233 PQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 311 (1171)
Q Consensus 233 ~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vll 311 (1171)
||+|++|++|++|||.++.+ .+++++.++++.+++.+.++.+|+|++|.+|++|.+||||||||++|||||+++|+++|
T Consensus 398 ~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ili 477 (544)
T TIGR01842 398 PQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVV 477 (544)
T ss_pred cCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999986654 67788889999999999999999999999999999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhh
Q 001055 312 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 312 LDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
|||||++||+++++.+.+.+.+...+++|+|+|||+++.++.||+|++|++|++++.|+++++.+
T Consensus 478 lDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 478 LDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred EeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999877665446899999999999998999999999999999999988753
No 84
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.6e-53 Score=526.03 Aligned_cols=378 Identities=22% Similarity=0.362 Sum_probs=316.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Q 001055 8 IISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIP--VLV 85 (1171)
Q Consensus 8 ~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~--~~~ 85 (1171)
+.+++++..++.++..++..+.+.|.++++++||.|++|+.+.+++.+..++..+...+.....+....+...+. ..+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (569)
T PRK10789 157 YGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANL 236 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777788889999999999999999999999988887665554444433333333222222221 123
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCcEEE
Q 001055 86 TVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISI 165 (1171)
Q Consensus 86 ~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~ 165 (1171)
.++++|.+.+..|.+|++.++++..++..+..|+..++..+..+..++.+++||.++++.+++........+.....|++
T Consensus 237 ~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~I~~ 316 (569)
T PRK10789 237 LAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSEPVPEGRGELDV 316 (569)
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCCCCCcEEE
Confidence 34567888889999999999999999999999999999999999999999999999997654321111111112235999
Q ss_pred EeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEEEEe
Q 001055 166 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVP 233 (1171)
Q Consensus 166 ~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~ 233 (1171)
+|++|+|+. .++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. ++..++|+|
T Consensus 317 ~~v~~~y~~-~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 395 (569)
T PRK10789 317 NIRQFTYPQ-TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVS 395 (569)
T ss_pred EEEEEECCC-CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEc
Confidence 999999974 3467999999999999999999999999999999999999999986532 245699999
Q ss_pred cCCCCCcccHHHHHhcCC-CCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEE
Q 001055 234 QVSWIFNATVRDNILFGS-AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIF 312 (1171)
Q Consensus 234 Q~~~l~~~Tv~eni~~g~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllL 312 (1171)
|+|++|++|++|||.++. ..+++++..+++.+++.+++..+|+|++|.+|++|.+||||||||++|||||+++|+++||
T Consensus 396 q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illl 475 (569)
T PRK10789 396 QTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILIL 475 (569)
T ss_pred cCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999999985 4577888899999999999999999999999999999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHHH
Q 001055 313 DDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 387 (1171)
Q Consensus 313 DEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 387 (1171)
||||++||+++++.+.+.+.+. .+++|+|+|||+++.+..+|+|++|++|+++++|+++++.++.+.|+.++..
T Consensus 476 DEpts~LD~~~~~~i~~~l~~~-~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~ 549 (569)
T PRK10789 476 DDALSAVDGRTEHQILHNLRQW-GEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRY 549 (569)
T ss_pred ECccccCCHHHHHHHHHHHHHH-hCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHH
Confidence 9999999999999999987654 3689999999999999999999999999999999999999888888887754
No 85
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.1e-54 Score=485.80 Aligned_cols=375 Identities=27% Similarity=0.375 Sum_probs=307.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Q 001055 9 ISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSI--PVLVT 86 (1171)
Q Consensus 9 ~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~--~~~~~ 86 (1171)
.+...+++++..++.++..+...+.|.+-++||.|+-|+...+++...-.+.-....+.....++..+....+ ..++.
T Consensus 196 t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~ 275 (591)
T KOG0057|consen 196 TRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTF 275 (591)
T ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHH
Confidence 3445677889999999999999999999999999999999998887644333332222222222222222221 12233
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCcEEEE
Q 001055 87 VVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIR 166 (1171)
Q Consensus 87 ~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~ 166 (1171)
+...|..-+..+.+|.+.+....+++.++..|+.++...+..+.++..-+.-+.......+.......+.......|+++
T Consensus 276 im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~~~~i~~~~~~I~F~ 355 (591)
T KOG0057|consen 276 IMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEAALPIELFGGSIEFD 355 (591)
T ss_pred HHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhccCCcccCCCcEEEE
Confidence 34455555677899999999999999999999999999999988888877665444333222111101222222359999
Q ss_pred eeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEEEEec
Q 001055 167 NGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVPQ 234 (1171)
Q Consensus 167 ~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q 234 (1171)
||+|+|++ ++++|+++||+|++||.|||||+|||||||++++|.++++ ++|.+.. +|+.||||||
T Consensus 356 dV~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQ 432 (591)
T KOG0057|consen 356 DVHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQ 432 (591)
T ss_pred eeEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCC
Confidence 99999974 5679999999999999999999999999999999999999 7776532 5667999999
Q ss_pred CCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEe
Q 001055 235 VSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFD 313 (1171)
Q Consensus 235 ~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLD 313 (1171)
+..||+.||.+||.+|++ ..++++.++++.+++++.+..+|+|+.|.+|++|..|||||||||+||||+++||+|++||
T Consensus 433 d~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~D 512 (591)
T KOG0057|consen 433 DSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLD 512 (591)
T ss_pred cccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEec
Confidence 999999999999999976 4678889999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHHH
Q 001055 314 DPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 387 (1171)
Q Consensus 314 Epts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 387 (1171)
||||+||.++++.+++.+.+ ...++|+|+|.||++.++.+|+|+++++|++.+.|++++++...+.|+.++..
T Consensus 513 EaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~~ 585 (591)
T KOG0057|consen 513 EATSALDSETEREILDMIMD-VMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWTT 585 (591)
T ss_pred CcccccchhhHHHHHHHHHH-hcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhcc
Confidence 99999999999999998776 55789999999999999999999999999999999999999988888887753
No 86
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.9e-53 Score=537.56 Aligned_cols=378 Identities=25% Similarity=0.390 Sum_probs=325.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 001055 7 FIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPV--L 84 (1171)
Q Consensus 7 ~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~--~ 84 (1171)
++.+++++..++.++..+++.+.+.|.++|+++||.||.|+.+.+++.+..++..+...+..........+...+.. .
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 376 (694)
T TIGR01846 297 FVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTF 376 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788888889999999999999999999999999999999987777766655555555444433333322 2
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCC-CCCCCCCCcE
Q 001055 85 VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPN-PPLTSGLPAI 163 (1171)
Q Consensus 85 ~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~-~~~~~~~~~i 163 (1171)
+.++++|++.+..|.+|.|.++++..+...+..|+..+.+.+..+.+++.+++|+.++++.+++..... ...+.....|
T Consensus 377 ~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~i 456 (694)
T TIGR01846 377 AILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAGLAALPELRGAI 456 (694)
T ss_pred HHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCCeE
Confidence 344668889999999999999999999999999999999999999999999999999998765322111 1111122359
Q ss_pred EEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEEE
Q 001055 164 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAY 231 (1171)
Q Consensus 164 ~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~ 231 (1171)
+++|++|+|++. ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+.. ++..|+|
T Consensus 457 ~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~ 535 (694)
T TIGR01846 457 TFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGV 535 (694)
T ss_pred EEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeE
Confidence 999999999743 467999999999999999999999999999999999999999886532 3456999
Q ss_pred EecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEE
Q 001055 232 VPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 310 (1171)
Q Consensus 232 v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vl 310 (1171)
|||++.+|++||+|||.++.+ .+++++.++++.+++.+.++.+|.|++|.+|++|.+||||||||++|||||+++|+++
T Consensus 536 v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~il 615 (694)
T TIGR01846 536 VLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRIL 615 (694)
T ss_pred EccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 999999999999999999754 5678899999999999999999999999999999999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHH
Q 001055 311 IFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 386 (1171)
Q Consensus 311 lLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 386 (1171)
||||||++||+++++.+.+.+.+. .+++|+|+|||+++.+..||+|++|++|+++++|+++++.+..+.|++++.
T Consensus 616 ilDEpts~LD~~~~~~i~~~l~~~-~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~ 690 (694)
T TIGR01846 616 IFDEATSALDYESEALIMRNMREI-CRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARLWQ 690 (694)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHH-hCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHcCChHHHHHH
Confidence 999999999999999999987665 468999999999999999999999999999999999999988888888765
No 87
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=9.3e-52 Score=523.45 Aligned_cols=522 Identities=20% Similarity=0.245 Sum_probs=384.3
Q ss_pred HHHHHHHhHHhhhhhhccccccCC---CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Q 001055 475 LTETLRVSSSTWLSYWTDQSSLKT---HGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMV 551 (1171)
Q Consensus 475 l~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~ 551 (1171)
+........|..+...++...... .....+...+++..+...++.....+.....+.+...-+-..+|+|.+++.-.
T Consensus 212 ~~~~~~~~~P~lL~~li~~~~~~~~~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~IY~K~L~ls~~ 291 (1381)
T KOG0054|consen 212 LRDLAGFVGPLLLKKLILFFSEKRLPLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISAIYRKALRLSNS 291 (1381)
T ss_pred HHHHHccccHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHhhhcCchh
Confidence 333335555666655544322221 11223333344444455555555666677788888888899999999999988
Q ss_pred ccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 552 FFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKR 631 (1171)
Q Consensus 552 ~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 631 (1171)
.-...+.|+++|-++.|++.+++..... ..+....++++.++.++.....+..++.+.++++++++..+..+...+.+.
T Consensus 292 ~~~~~t~G~ivNlms~D~~ri~~~~~~~-h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~~~a~~~~~~q~ 370 (1381)
T KOG0054|consen 292 ARGETTVGEIVNLMSVDAQRLSDAACFL-HLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSFLAKKIAKFQK 370 (1381)
T ss_pred hccCCCcchhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999998765543 444444455555555444444444444444555666666666666666666
Q ss_pred HHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Q 001055 632 LDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAV-VQ 710 (1171)
Q Consensus 632 ~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~ 710 (1171)
.....+......+.|.++|+++||.|.+|..|.+...+..+.-.+.-........+..+.......++.++.....+ ..
T Consensus 371 ~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~~tF~~~v~~~ 450 (1381)
T KOG0054|consen 371 RLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSVVTFVVFVLLL 450 (1381)
T ss_pred HHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 66666777788999999999999999999999988877666554443333333333332222222222222111111 22
Q ss_pred cCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCCCccEEEE
Q 001055 711 NGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFE 790 (1171)
Q Consensus 711 ~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~ 790 (1171)
+...+...+| ..++....+..++..+........+..++++|+.+++..++..+...+. .+..+.+..++++
T Consensus 451 ~~~lt~~~aF-----~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~---~~~~~~~~~i~i~ 522 (1381)
T KOG0054|consen 451 GNLLTASTAF-----TSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVER---SPDEAGENAIEIK 522 (1381)
T ss_pred CccccHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcccccc---CCCCCCCceEEEe
Confidence 3333322222 2333333344445455556666677799999999999766544332211 1112234469999
Q ss_pred eeEEEeCCC-CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcC
Q 001055 791 DVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQ 869 (1171)
Q Consensus 791 ~vs~~y~~~-~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q 869 (1171)
|.+|++++. ..+.|+||||+|++|+.+||||+.|||||+|+.+|+|.++..+|+|.++|. ++||||
T Consensus 523 ~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs-------------iaYv~Q 589 (1381)
T KOG0054|consen 523 NGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS-------------VAYVPQ 589 (1381)
T ss_pred eeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe-------------EEEecc
Confidence 999999763 345999999999999999999999999999999999999999999999983 999999
Q ss_pred CcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEec
Q 001055 870 SPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 949 (1171)
Q Consensus 870 ~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDE 949 (1171)
.|++|++||||||.++.+..++...++++.|++..-++.+|.|-.|.+||+|.+||||||||++||||++++++|+|||.
T Consensus 590 ~pWI~ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDD 669 (1381)
T KOG0054|consen 590 QPWIQNGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDD 669 (1381)
T ss_pred ccHhhCCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcC
Confidence 99999999999999988899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCHHHHHHHH-HHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHH
Q 001055 950 ATAAVDVRTDALIQ-KTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1019 (1171)
Q Consensus 950 pTs~LD~~t~~~i~-~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~ 1019 (1171)
|.|++|.++-+.|. +.|+...+++|+|+|||.++++.+||+|++|++|+|.+.|+++|+++. +..|.++
T Consensus 670 plSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~-~~~~~~l 739 (1381)
T KOG0054|consen 670 PLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKS-GGDFAEL 739 (1381)
T ss_pred cchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhc-chhHHHH
Confidence 99999999877655 567667789999999999999999999999999999999999999965 4456655
No 88
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=3.8e-53 Score=525.90 Aligned_cols=379 Identities=23% Similarity=0.339 Sum_probs=317.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 001055 6 TFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIP--V 83 (1171)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~--~ 83 (1171)
.++.+++++..++.++..++..+.+.|.++|+++||.|+.++.+.+++.+..++..+...+..........+...+. .
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (588)
T PRK13657 174 TLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTIT 253 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677777788888899999999999999999999999998888877666555543333322222222222211 2
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccC-CCC-CCCCCCC
Q 001055 84 LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILL-PNP-PLTSGLP 161 (1171)
Q Consensus 84 ~~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~-~~~-~~~~~~~ 161 (1171)
.+.++++|++.+..|.+|++.+++++.++..+..|+..+...+..+..+..+++|+.+++..+++... +.. .......
T Consensus 254 ~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 333 (588)
T PRK13657 254 MLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKG 333 (588)
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCcCCCCC
Confidence 23456678898999999999999999999999999999999999999999999999999876432111 111 1111123
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 229 (1171)
.|+++|++|+|+. ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+.. ++..|
T Consensus 334 ~I~~~~vsf~y~~--~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 411 (588)
T PRK13657 334 AVEFDDVSFSYDN--SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNI 411 (588)
T ss_pred eEEEEEEEEEeCC--CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 5999999999973 357999999999999999999999999999999999999999886532 34579
Q ss_pred EEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCC
Q 001055 230 AYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 308 (1171)
Q Consensus 230 ~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~ 308 (1171)
+|+||+|.+|++|++|||.++.+ .+++++..+++.+++.++++.+|+|.+|.+|++|.+||||||||++|||||+++|+
T Consensus 412 ~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~ 491 (588)
T PRK13657 412 AVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPP 491 (588)
T ss_pred EEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999854 56788899999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHHH
Q 001055 309 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 387 (1171)
Q Consensus 309 vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 387 (1171)
|+|||||||+||+++++.+++.+.+. .+++|+|+||||++.+..+|+|++|++|++++.|+++++....+.|.++...
T Consensus 492 iliLDEpts~LD~~t~~~i~~~l~~~-~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~ 569 (588)
T PRK13657 492 ILILDEATSALDVETEAKVKAALDEL-MKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAALLRA 569 (588)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHH-hcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCCChHHHHHHH
Confidence 99999999999999999999987654 3579999999999999999999999999999999999998887888887764
No 89
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=3.8e-53 Score=525.81 Aligned_cols=380 Identities=26% Similarity=0.394 Sum_probs=320.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 001055 6 TFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSI--PV 83 (1171)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~--~~ 83 (1171)
.++.+++++..++.++..++..+.+.|.++++++||.|++|+.+.+++.+..++..+..++..........+...+ ..
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (576)
T TIGR02204 176 LLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGA 255 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888889999999999999999999999999999999998877766655444333333322222222 12
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCC-CC-C-CCCCC
Q 001055 84 LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLP-NP-P-LTSGL 160 (1171)
Q Consensus 84 ~~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~-~~-~-~~~~~ 160 (1171)
.+.++++|++.+..|.+|++.++++..++..+..|+..++..+..+.+++.+++||.++++.+++.... .+ . ..+..
T Consensus 256 ~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~ 335 (576)
T TIGR02204 256 IVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLR 335 (576)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCccCCcCCC
Confidence 234456788888899999999999999999999999999999999999999999999999865432111 11 1 11112
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCc
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 228 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 228 (1171)
..|+++|++|+|+...++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+.. +++.
T Consensus 336 ~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~ 415 (576)
T TIGR02204 336 GEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRAR 415 (576)
T ss_pred ceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHh
Confidence 3599999999998543468999999999999999999999999999999999999999886532 2356
Q ss_pred EEEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCC
Q 001055 229 VAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 307 (1171)
Q Consensus 229 i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~ 307 (1171)
|+|+||+|++|++||+|||.++.+ .+++++..+++.+++.+.++.+|+|++|.+|++|.+||||||||++||||++++|
T Consensus 416 i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~ 495 (576)
T TIGR02204 416 MALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDA 495 (576)
T ss_pred ceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999864 4678899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHH
Q 001055 308 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 386 (1171)
Q Consensus 308 ~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 386 (1171)
+++|||||||+||+++++.+++.+.+. .+++|+|+|||+++.++.+|+|+++++|++++.|+++++.+..+.|+.+..
T Consensus 496 ~ililDEpts~lD~~~~~~i~~~l~~~-~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~~~~~~~l~~ 573 (576)
T TIGR02204 496 PILLLDEATSALDAESEQLVQQALETL-MKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGLYARLAR 573 (576)
T ss_pred CeEEEeCcccccCHHHHHHHHHHHHHH-hCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHcCChHHHHHh
Confidence 999999999999999999999877665 358999999999999999999999999999999999999888777777654
No 90
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=4.1e-52 Score=518.27 Aligned_cols=510 Identities=15% Similarity=0.139 Sum_probs=360.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 465 VVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPL-----FYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHD 539 (1171)
Q Consensus 465 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 539 (1171)
.+++.+++.++...+....+.+....+|.......... .+..+++++.+...+..++..++......+...++++
T Consensus 97 ~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~ 176 (659)
T TIGR00954 97 LLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYLLKELKLRFRVRLTRYLYS 176 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666777777777776665332111111 1122223333444555556666666667777777888
Q ss_pred HHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 001055 540 AMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGI-VSTMSLWAIMPLLLLFYAA 618 (1171)
Q Consensus 540 ~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~ 618 (1171)
..+.+....++.||+. ++|++++|+++|++.+...+...+..++..++.++..++.+.. ..+...++++.++++.+.+
T Consensus 177 ~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i 255 (659)
T TIGR00954 177 KYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVV 255 (659)
T ss_pred HHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 8888877888888886 7899999999999999888777777777776666655444443 3443333333333444444
Q ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 001055 619 YLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVG-- 696 (1171)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 696 (1171)
..++.+...+..+......+.+.+...|.++|+++|++|+.++...+.+.+..+...+..........++.....++.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 335 (659)
T TIGR00954 256 LTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKY 335 (659)
T ss_pred HHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 455666666666666777788999999999999999999999887777766655555444443333333333333322
Q ss_pred --HHHHHHHHHH-HHHhc----CCcchhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 001055 697 --GLMIWLTATF-AVVQN----GSAENQEAFASTMGLLLSY---ALNITSLLTAVLRLASLAENSLNAVERVGNYIELPS 766 (1171)
Q Consensus 697 --~l~~~~~~~~-~~~~~----~~~~~~~~~~~~~g~~l~~---~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~ 766 (1171)
..+.++++.. .+... +..+ ....++.++.+ ...+..++..+......++....+.+|+.++++.++
T Consensus 336 ~~~~~~~~~~g~~~~~~~~~~~g~~t----~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~ 411 (659)
T TIGR00954 336 TWSAVGLVAVSIPIFDKTHPAFLEMS----EEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLD 411 (659)
T ss_pred HHHHHHHHHHHHHHHhcccccccccC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222 22211 1111 11122223333 334455566666677778888999999999886533
Q ss_pred CCC-------cccC--CC----C----C---CCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCc
Q 001055 767 EAP-------LVIE--SN----R----P---PPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAG 826 (1171)
Q Consensus 767 e~~-------~~~~--~~----~----~---~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsG 826 (1171)
+.. ...+ .. . . .......+.|+++||+|+|+++ +++|+|+||+|++||++||+||||||
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsG 490 (659)
T TIGR00954 412 DVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCG 490 (659)
T ss_pred HHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCC
Confidence 210 0000 00 0 0 0000123569999999999643 36999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCC--------CCCHHHHHHHHH
Q 001055 827 KSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS--------EHSDADLWEALE 898 (1171)
Q Consensus 827 KSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~--------~~~~~~i~~~l~ 898 (1171)
||||+++|+|+++|++|+|.+++ |++++||||+|.+|++|+++|+.+.. ..+++++.++++
T Consensus 491 KSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~ 559 (659)
T TIGR00954 491 KSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILD 559 (659)
T ss_pred HHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHH
Confidence 99999999999999999998863 56899999999999999999997531 245778899999
Q ss_pred HhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEE
Q 001055 899 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLII 978 (1171)
Q Consensus 899 ~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~v 978 (1171)
.+++.+++++ |.|+++..+ .+.+||||||||++|||||+++|++|||||||++||+++++.+++.+++ .++|+|+|
T Consensus 560 ~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~--~~~tvI~i 635 (659)
T TIGR00954 560 NVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE--FGITLFSV 635 (659)
T ss_pred HcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH--cCCEEEEE
Confidence 9999999988 899999876 5678999999999999999999999999999999999999999999987 48999999
Q ss_pred ecChhhhhhcCEEEEEe
Q 001055 979 AHRLNTIIDCDRILLLD 995 (1171)
Q Consensus 979 tH~~~~~~~~d~i~vl~ 995 (1171)
|||++.+..||++++|+
T Consensus 636 sH~~~~~~~~d~il~l~ 652 (659)
T TIGR00954 636 SHRKSLWKYHEYLLYMD 652 (659)
T ss_pred eCchHHHHhCCEEEEEe
Confidence 99999998899999997
No 91
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-53 Score=480.78 Aligned_cols=374 Identities=25% Similarity=0.393 Sum_probs=300.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 001055 9 ISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLVTV- 87 (1171)
Q Consensus 9 ~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~- 87 (1171)
.+..++..+...+.+..--+.+.+.+.|+...++||.++.+.+.+.+.-+...+..++...+.....++..++..++++
T Consensus 180 ~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~ 259 (573)
T COG4987 180 YRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIG 259 (573)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666667777788899999999999999999999888766666666666666666666665555444322
Q ss_pred --HHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCcEE
Q 001055 88 --VSFGMFTLLGGDLT-PARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAIS 164 (1171)
Q Consensus 88 --~~~g~~~~~~~~l~-~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~ 164 (1171)
++++ -..-.|..+ +..+...+..|..+-.-....|..+....+...|++|+.+++..+++...+++..+.....++
T Consensus 260 ~l~w~a-~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~~~~~~~~~~~l~ 338 (573)
T COG4987 260 LLLWMA-AQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPDEQTATTGQALE 338 (573)
T ss_pred HHHHHH-hcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCCccccCCccceee
Confidence 2222 112235555 333333333233332111223477788999999999999999887665444222222222799
Q ss_pred EEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEEEE
Q 001055 165 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYV 232 (1171)
Q Consensus 165 ~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v 232 (1171)
++|+||+|++ ++.++|+|+||++++||+++|+|++|||||||+++|.|.++|++|.+.. ++..|+++
T Consensus 339 ~~~vsF~y~~-~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl 417 (573)
T COG4987 339 LRNVSFTYPG-QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVL 417 (573)
T ss_pred eccceeecCC-CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhh
Confidence 9999999985 3568999999999999999999999999999999999999999986532 33469999
Q ss_pred ecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEE
Q 001055 233 PQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 311 (1171)
Q Consensus 233 ~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vll 311 (1171)
+|.+.+|++|+|+|+.++++ .+++++.++++.++|.+.+...|+|++|++||+|..||||||||++|||+|++|++++|
T Consensus 418 ~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~l 497 (573)
T COG4987 418 TQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWL 497 (573)
T ss_pred ccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEE
Confidence 99999999999999999976 46789999999999999999999999999999999999999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHH
Q 001055 312 FDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 385 (1171)
Q Consensus 312 LDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 385 (1171)
|||||.|||+.+++++.+.+... .+|||+|+|||++..++.+|||++|++|+++++|++++++.+.+.|.++.
T Consensus 498 LDEPTegLD~~TE~~vL~ll~~~-~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~~g~~~~l~ 570 (573)
T COG4987 498 LDEPTEGLDPITERQVLALLFEH-AEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGRYKRLY 570 (573)
T ss_pred ecCCcccCChhhHHHHHHHHHHH-hcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhccccHHHHHh
Confidence 99999999999999999976654 46999999999999999999999999999999999999999888887765
No 92
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=100.00 E-value=6.3e-54 Score=484.16 Aligned_cols=200 Identities=22% Similarity=0.308 Sum_probs=164.9
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.+.+.||+|+|+++. .++++++|.|.+++++|+|||||+|||||++++.|.+.|+.|.|.-.-. .+++
T Consensus 389 vi~~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~~~ 456 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NKLP 456 (614)
T ss_pred eEEEeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------ccch
Confidence 499999999998764 7999999999999999999999999999999999999999999875521 2344
Q ss_pred EEcCCcc---cccccHHhhccC-CCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 866 IIPQSPV---LFSGTVRFNLDP-FSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 866 ~v~Q~~~---lf~~tv~~nl~~-~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
+..|+-. .++.+.-+++.+ +.+ ...+++...+.++|+..-....| ..+||+|||.||++||++++
T Consensus 457 ~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p----------~~~LS~Gqr~rVlFa~l~~k 526 (614)
T KOG0927|consen 457 RYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVP----------MSQLSDGQRRRVLFARLAVK 526 (614)
T ss_pred hhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccc----------hhhcccccchhHHHHHHHhc
Confidence 5555542 334466666543 332 45677888888888765444333 35799999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEe-cChhHHh
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEY-DTPEELL 1009 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~-g~~~el~ 1009 (1171)
.|.+|||||||+|||.++...+.++|.+ +.++||+||||+..+.. +++|++.++|.+... |.+....
T Consensus 527 qP~lLlLDEPtnhLDi~tid~laeaiNe--~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk 595 (614)
T KOG0927|consen 527 QPHLLLLDEPTNHLDIETIDALAEAINE--FPGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYK 595 (614)
T ss_pred CCcEEEecCCCcCCCchhHHHHHHHHhc--cCCceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHH
Confidence 9999999999999999999999999988 67899999999999998 999999999988765 7665543
No 93
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=4.2e-53 Score=474.90 Aligned_cols=364 Identities=23% Similarity=0.368 Sum_probs=322.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Q 001055 12 MQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLV--TVVS 89 (1171)
Q Consensus 12 ~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 89 (1171)
.++-.++..+..-++..+....+++.++|+++|+.+....+|.+.....+....+.+-..+..+.+...+-+++ .++.
T Consensus 183 t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg 262 (580)
T COG4618 183 TRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLG 262 (580)
T ss_pred hhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556778888889999999999999999999999999999999999999888777766666665555555544 3466
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCcEEEEeeE
Q 001055 90 FGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGY 169 (1171)
Q Consensus 90 ~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~s 169 (1171)
.|.|++..|++|+|.+++...+......|+......|.++..++.|++|++++|...+....+ -+.+.+...+.+++++
T Consensus 263 ~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~-m~LP~P~g~L~Ve~l~ 341 (580)
T COG4618 263 LGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAER-MPLPAPQGALSVERLT 341 (580)
T ss_pred cceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCC-CCCCCCCceeeEeeee
Confidence 788999999999999999999999999999999999999999999999999999865432221 2223334469999999
Q ss_pred EEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEEEEecCCC
Q 001055 170 FSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSW 237 (1171)
Q Consensus 170 ~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~ 237 (1171)
+.-| +.++++++|+||++++||.++||||||||||||.|+|.|.++|.+|.+.. ..++|||+||+..
T Consensus 342 ~~PP-g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVe 420 (580)
T COG4618 342 AAPP-GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVE 420 (580)
T ss_pred ecCC-CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccce
Confidence 9766 45689999999999999999999999999999999999999999987632 3457999999999
Q ss_pred CCcccHHHHHh-cCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcC
Q 001055 238 IFNATVRDNIL-FGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL 316 (1171)
Q Consensus 238 l~~~Tv~eni~-~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpt 316 (1171)
||++||.|||. |+.+.+++++.++.+.++.++.+-.+|+||+|.||++|.+|||||||||+||||||++|.+++||||-
T Consensus 421 LF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPN 500 (580)
T COG4618 421 LFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPN 500 (580)
T ss_pred ecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCC
Confidence 99999999997 77678889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001055 317 SALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 317 s~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
|+||.+.+..+.+.+...+.+|.|+|+|||+++.+..+|+|.+|++|++..-|+.+|++++
T Consensus 501 sNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 501 SNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred CCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 9999999999999988888889999999999999999999999999999999998887653
No 94
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=5.6e-52 Score=513.08 Aligned_cols=378 Identities=21% Similarity=0.312 Sum_probs=313.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 001055 7 FIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIP--VL 84 (1171)
Q Consensus 7 ~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~--~~ 84 (1171)
++.+++++..++..+..++..+.+.|.++|+++||.|+.|+.+.+++.+..++..+...+..........+...+. ..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (585)
T TIGR01192 175 LVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISM 254 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777778888899999999999999999999998888877665544443333322332222222222 12
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCC-CC-CCCCCCCc
Q 001055 85 VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLP-NP-PLTSGLPA 162 (1171)
Q Consensus 85 ~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~-~~-~~~~~~~~ 162 (1171)
+.++++|.+.+..|.++++.+++++.++..+..|+..+++.+..+..++.+++|+.++++.+++...+ .+ ..+.....
T Consensus 255 ~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (585)
T TIGR01192 255 MCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGA 334 (585)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCCCCCCCCe
Confidence 34456788888999999999999999999999999999999999999999999999998764322111 11 11112235
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 230 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 230 (1171)
|+++|++|+|++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+..++
T Consensus 335 i~~~~v~~~y~~--~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 412 (585)
T TIGR01192 335 VEFRHITFEFAN--SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIA 412 (585)
T ss_pred EEEEEEEEECCC--CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheE
Confidence 999999999974 346999999999999999999999999999999999999999986532 345699
Q ss_pred EEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCE
Q 001055 231 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 309 (1171)
Q Consensus 231 ~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~v 309 (1171)
|+||+|++|++|++|||.++.+ .+++++.++++.+++.+.+..+|+|++|.+|++|.+||||||||++|||||+++|++
T Consensus 413 ~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~i 492 (585)
T TIGR01192 413 TVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPI 492 (585)
T ss_pred EEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999999854 467778889999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHHH
Q 001055 310 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 387 (1171)
Q Consensus 310 llLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 387 (1171)
+||||||++||+++++.+.+.+.+. .+++|+|+|||+++.+..||+|++|++|++++.|+++++.++.+.|++++..
T Consensus 493 lilDEpts~LD~~~~~~i~~~l~~~-~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~ 569 (585)
T TIGR01192 493 LVLDEATSALDVETEARVKNAIDAL-RKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYKLLRR 569 (585)
T ss_pred EEEECCccCCCHHHHHHHHHHHHHH-hCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCCChHHHHHHh
Confidence 9999999999999999999877554 4589999999999999999999999999999999999999888888887754
No 95
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.2e-50 Score=539.50 Aligned_cols=482 Identities=18% Similarity=0.249 Sum_probs=347.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q 001055 509 SLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVS 588 (1171)
Q Consensus 509 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~ 588 (1171)
+++.++..++.....|.....+.+....+...+|+|+++++...+++.++|+++|+++.|+..+...+.... .+....+
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~-~~~~~pi 207 (1490)
T TIGR01271 129 CLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAH-FVWIAPL 207 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHH
Confidence 334444555556666677777788888888889999999999999999999999999999999987655432 3333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHH
Q 001055 589 QLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADING 668 (1171)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~ 668 (1171)
.++..++++.....+..++.+.++++++++..+..+.....++..............|.++|+++||.|++|+.+.+.+.
T Consensus 208 ~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~ 287 (1490)
T TIGR01271 208 QVILLMGLIWELLEVNGFCGLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIK 287 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHH
Confidence 34433333333333332222223333344444444444555555555666778899999999999999999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 001055 669 KSMDKNIRYTLVNMGANRWLAIRLEIVGGLM-IWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSL-LTAVLRLAS 746 (1171)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~-~~~~~~~~~ 746 (1171)
+..+...+..........+..........+. +..++.+.+.. + ......|. .++++..+..+ +..+.....
T Consensus 288 ~~R~~El~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~y~~~~-~-~~~~~~ft-----~lal~~lL~~~l~~~lp~~~~ 360 (1490)
T TIGR01271 288 NIRQDELKLTRKIAYLRYFYSSAFFFSGFFVVFLSVVPYALIK-G-IILRRIFT-----TISYCIVLRMTVTRQFPGAIQ 360 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-C-CcHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 7766555443333222222211111111111 11111222221 1 11111111 12222222222 234556666
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCC---------------------------
Q 001055 747 LAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE--------------------------- 799 (1171)
Q Consensus 747 ~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~--------------------------- 799 (1171)
.+.....+++|+.+++..++..+.. .. .....++++|++|.|+..
T Consensus 361 ~~~~a~~s~~RI~~fL~~~e~~~~~--~~------~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (1490)
T TIGR01271 361 TWYDSLGAITKIQDFLCKEEYKTLE--YN------LTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFS 432 (1490)
T ss_pred HHHHHHHHHHHHHHHhcCccccccc--cc------CCCCceEEecceEecCCcccccccccccccccccccccccccccc
Confidence 6777889999999999765432110 00 012247888888887421
Q ss_pred -----CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccc
Q 001055 800 -----LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF 874 (1171)
Q Consensus 800 -----~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf 874 (1171)
.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|+||||+|.+|
T Consensus 433 ~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~ 499 (1490)
T TIGR01271 433 NFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIM 499 (1490)
T ss_pred ccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccC
Confidence 13589999999999999999999999999999999999999999999997 499999999999
Q ss_pred cccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCC
Q 001055 875 SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAV 954 (1171)
Q Consensus 875 ~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~L 954 (1171)
++||+|||.+.....++...++++.+++.+.++.+|.|.+|.++++|.+|||||||||+||||++.+|+|+||||||++|
T Consensus 500 ~~Ti~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saL 579 (1490)
T TIGR01271 500 PGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHL 579 (1490)
T ss_pred CccHHHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 99999999866555556677888889999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHH-HHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHHH
Q 001055 955 DVRTDALIQKT-IREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 1020 (1171)
Q Consensus 955 D~~t~~~i~~~-l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~ 1020 (1171)
|+.+.+.+.+. +....+++|+|+|||+++.+..||+|++|++|++++.|+++++.+.. ..|.+..
T Consensus 580 D~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~~-~~~~~~~ 645 (1490)
T TIGR01271 580 DVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKR-PDFSSLL 645 (1490)
T ss_pred CHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhcC-hHHHHHH
Confidence 99999999974 66666789999999999999889999999999999999999998653 3444443
No 96
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=2.8e-52 Score=512.35 Aligned_cols=333 Identities=24% Similarity=0.348 Sum_probs=281.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q 001055 13 QKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVL--VTVVSF 90 (1171)
Q Consensus 13 ~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 90 (1171)
++..++..+..++..+.+.|.++|+++||.|++|+.+.+++.+..++..+...+.....+....+...+..+ +.++++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (529)
T TIGR02868 179 RAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWA 258 (529)
T ss_pred chHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777888999999999999999999999999999999877776666555555554443333333222 334567
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCC---C-CCCCCCCcEEEE
Q 001055 91 GMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPN---P-PLTSGLPAISIR 166 (1171)
Q Consensus 91 g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~---~-~~~~~~~~i~~~ 166 (1171)
|.+.+..|.++++.+.+++.+...+..|+..+++.+..+..+..+++|+.++++.+++...+. + ...+....|+++
T Consensus 259 g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~ 338 (529)
T TIGR02868 259 GGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELR 338 (529)
T ss_pred HHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEE
Confidence 888888999999999999999999999999999999999999999999999997654321111 1 011122359999
Q ss_pred eeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-----------ecCcEEEEecC
Q 001055 167 NGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVAYVPQV 235 (1171)
Q Consensus 167 ~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~~v~Q~ 235 (1171)
||+|+|++ ++++|+|+||++++||+++||||||||||||+++|+|+++|++|.+.. +++.|+||||+
T Consensus 339 ~vsf~Y~~--~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~ 416 (529)
T TIGR02868 339 DLSFGYPG--SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQD 416 (529)
T ss_pred EEEEecCC--CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccC
Confidence 99999974 346999999999999999999999999999999999999999987643 23579999999
Q ss_pred CCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeC
Q 001055 236 SWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 314 (1171)
Q Consensus 236 ~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDE 314 (1171)
|++|++||+|||.+|.+ .+++++.++++.+++++++..+|+|++|.+|++|.+||||||||++|||||+++|+||||||
T Consensus 417 ~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE 496 (529)
T TIGR02868 417 AHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDE 496 (529)
T ss_pred cccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999999999999864 57889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCc
Q 001055 315 PLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQL 348 (1171)
Q Consensus 315 pts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~ 348 (1171)
|||+||+++++.+.+.+.+. .+++|+|+|||++
T Consensus 497 ~TSaLD~~te~~I~~~l~~~-~~~~TvIiItHrl 529 (529)
T TIGR02868 497 PTEHLDAGTESELLEDLLAA-LSGKTVVVITHHL 529 (529)
T ss_pred CcccCCHHHHHHHHHHHHHh-cCCCEEEEEecCC
Confidence 99999999999999987653 4689999999985
No 97
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=2.9e-51 Score=503.35 Aligned_cols=351 Identities=25% Similarity=0.365 Sum_probs=288.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 001055 8 IISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVL--V 85 (1171)
Q Consensus 8 ~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~--~ 85 (1171)
+.++.++..++.++..++..+.+.|.++|+++||.|++|+.+..++.+..++..+...+..........+...+..+ +
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (529)
T TIGR02857 164 IGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVA 243 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677788888889999999999999999999999999998888765555444333332222222222222211 1
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCcEEE
Q 001055 86 TVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISI 165 (1171)
Q Consensus 86 ~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~ 165 (1171)
.++.++.+.+..|.+|++.+++++.++..+..|+..+...+..+..+..+++|+.++++.+++.....+........|++
T Consensus 244 ~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~~~~~~~~~~i~~ 323 (529)
T TIGR02857 244 LVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKAPVTAAPAPSLEF 323 (529)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCcCCCCCCCCeEEE
Confidence 11234445556889999999999999999999999999999999999999999999997543211111111111236999
Q ss_pred EeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEEEEe
Q 001055 166 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVP 233 (1171)
Q Consensus 166 ~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~ 233 (1171)
+|++|+|++. ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. +++.|+|||
T Consensus 324 ~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~ 402 (529)
T TIGR02857 324 SGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVP 402 (529)
T ss_pred EEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEc
Confidence 9999999743 358999999999999999999999999999999999999999886532 345699999
Q ss_pred cCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEE
Q 001055 234 QVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIF 312 (1171)
Q Consensus 234 Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllL 312 (1171)
|+|++|++||+|||.++.+ .+++++.++++.+++.++++.+|+|++|.+|++|.+||||||||++|||||+++|+++||
T Consensus 403 Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ilil 482 (529)
T TIGR02857 403 QHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLL 482 (529)
T ss_pred CCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999999854 567889999999999999999999999999999999999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEE
Q 001055 313 DDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV 360 (1171)
Q Consensus 313 DEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l 360 (1171)
|||||+||+++++.+.+.+.+. .+++|+|+|||+++.+..||+|++|
T Consensus 483 DE~ts~lD~~~~~~i~~~l~~~-~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 483 DEPTAHLDAETEALVTEALRAL-AQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred eCcccccCHHHHHHHHHHHHHh-cCCCEEEEEecCHHHHHhCCEEEeC
Confidence 9999999999999999877654 3689999999999999999999875
No 98
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.2e-48 Score=522.79 Aligned_cols=530 Identities=17% Similarity=0.214 Sum_probs=364.7
Q ss_pred HHHHHHHHHHHHHhHHhhhhhhccccccCCCCchH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 469 LLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGPLF----YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHS 544 (1171)
Q Consensus 469 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 544 (1171)
.+++.++..++....|..+....+..... ..... +...++++.++..++.....+.....+.+....+...+|+|
T Consensus 249 ~~~~~l~~~~~~l~~P~ll~~~v~~l~~~-~~~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K 327 (1560)
T PTZ00243 249 QIPFKLLSDVCTLTLPVLLKYFVKFLDAD-NATWGRGLGLVLTLFLTQLIQSVCLHRFYYISIRCGLQYRSALNALIFEK 327 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555556665555444321111 11111 22223333444555556666777788888888899999999
Q ss_pred HHcCCccccc--cCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 545 ILRAPMVFFH--TNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYY 622 (1171)
Q Consensus 545 ll~~p~~~f~--~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 622 (1171)
+++++...+. +.+.|+++|.++.|++.+...+... ..+....+.++.+++++.....+..++.+.++++++++..+.
T Consensus 328 ~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~-~~l~~~Pl~li~~~~lL~~~lG~~al~gv~vl~v~~pl~~~~ 406 (1560)
T PTZ00243 328 CFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYC-MYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVTLPLNGAI 406 (1560)
T ss_pred HHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 9999988776 5689999999999999998876443 334444444444444433333333333333334444444455
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 001055 623 QSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIW- 701 (1171)
Q Consensus 623 ~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~- 701 (1171)
.+.....++..........+...|.++|+++||.+++|+.+.+.+.+..+...+..........+..+.......++..
T Consensus 407 ~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~~~~~~~p~l~~~~ 486 (1560)
T PTZ00243 407 MKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSFVNNATPTLMIAV 486 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544455555555666677889999999999999999999998888776655554333333333333322222222221
Q ss_pred HHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCc------cc---
Q 001055 702 LTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPL------VI--- 772 (1171)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~------~~--- 772 (1171)
.++.+.+. ++..+....| ..++++..+..++..+......+.....++.|+.++++.++..+. ..
T Consensus 487 ~f~~y~~~-g~~Lt~~~vf-----t~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~ 560 (1560)
T PTZ00243 487 VFTVYYLL-GHELTPEVVF-----PTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDMEEYWRE 560 (1560)
T ss_pred HHHHHHHh-CCCCCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccchhhccc
Confidence 11222232 3333332222 223333344445555666667777889999999999976541100 00
Q ss_pred -----C--C-----CC-------C---------------------------CCCCCCCccEEEEeeEEEeC---------
Q 001055 773 -----E--S-----NR-------P---------------------------PPGWPSSGSIKFEDVVLRYR--------- 797 (1171)
Q Consensus 773 -----~--~-----~~-------~---------------------------~~~~~~~g~i~~~~vs~~y~--------- 797 (1171)
. . .. + +..+...+.+.++|++++++
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (1560)
T PTZ00243 561 QREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHIVE 640 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccccccccccccccccccccc
Confidence 0 0 00 0 00000113466777766531
Q ss_pred -----------------------------CCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEEC
Q 001055 798 -----------------------------PELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 848 (1171)
Q Consensus 798 -----------------------------~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~ 848 (1171)
.+.+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++
T Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~ 720 (1560)
T PTZ00243 641 GGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE 720 (1560)
T ss_pred ccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC
Confidence 112358999999999999999999999999999999999999999999863
Q ss_pred CEecCCCChHHHhhheEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhH
Q 001055 849 GFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 928 (1171)
Q Consensus 849 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGq 928 (1171)
++|+|+||+|.+|++||+||+.++.+...+.+.++++.+++.+.++.+|.|+++.+++.+.+|||||
T Consensus 721 -------------~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQ 787 (1560)
T PTZ00243 721 -------------RSIAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQ 787 (1560)
T ss_pred -------------CeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHH
Confidence 4699999999999999999998765555566788889899999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHH-HHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhH
Q 001055 929 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT-IREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEE 1007 (1171)
Q Consensus 929 kqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~-l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~e 1007 (1171)
||||+|||||+.+|+||||||||++||+.+.+.+.+. +....+++|+|+|||+++.+..||+|++|++|++++.|++++
T Consensus 788 kqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~ 867 (1560)
T PTZ00243 788 KARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSAD 867 (1560)
T ss_pred HHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999999988877654 444446899999999999998899999999999999999999
Q ss_pred HhhcCCChHHHHHH
Q 001055 1008 LLSNEGSSFSKMVQ 1021 (1171)
Q Consensus 1008 l~~~~~~~~~~~~~ 1021 (1171)
+++. +.|..+..
T Consensus 868 l~~~--~~~~~~~~ 879 (1560)
T PTZ00243 868 FMRT--SLYATLAA 879 (1560)
T ss_pred HHhC--hHHHHHHH
Confidence 9864 34555543
No 99
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-51 Score=454.79 Aligned_cols=353 Identities=24% Similarity=0.404 Sum_probs=292.0
Q ss_pred HHHHhhHHHHHHhCchHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Q 001055 31 NEILAAMDAVKCYAWENSFQSKVQN----VRNDELSWFRKAQFLAACNSFILNSIPVLVTVVSFGMFTLLGGDLTPARAF 106 (1171)
Q Consensus 31 ~e~l~~i~~IK~~~~e~~~~~~~~~----~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~f 106 (1171)
.+.+-+.++||.|+.|+...+++.. +++.|-+..-...++......+... .++....+.+|.+..+.+|+|...
T Consensus 402 vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~Ii~l--gll~gsll~aY~Vt~q~ltVGDfV 479 (790)
T KOG0056|consen 402 VDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNGIIGL--GLLAGSLLCAYRVTEQTLTVGDFV 479 (790)
T ss_pred hhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--HHhhhhheeeeeeeecccccccee
Confidence 3677889999999999876655443 3333333322222222222222111 111222345677778999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-cCCC-CCCCCCCCcEEEEeeEEEcCCCCCCCceeee
Q 001055 107 TSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKI-LLPN-PPLTSGLPAISIRNGYFSWDSKAERPTLLNI 184 (1171)
Q Consensus 107 ~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~-~~~~-~~~~~~~~~i~~~~~s~~~~~~~~~~~l~~i 184 (1171)
.+..++.++.+|++.+...+..++.+.+-++|+.|+++++++. +.|+ ++.......|+++|++|.|+. ++++|+||
T Consensus 480 lf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p--~k~vl~di 557 (790)
T KOG0056|consen 480 LFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDP--GKPVLSDI 557 (790)
T ss_pred hHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCC--CCceeecc
Confidence 9999999999999999999999999999999999999877643 2222 233333346999999999974 68999999
Q ss_pred eEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEEEEecCCCCCcccHHHHHhcCCC
Q 001055 185 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGSA 252 (1171)
Q Consensus 185 sl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~Tv~eni~~g~~ 252 (1171)
||++++|+.+++|||||+||||++++|.++++..+|.+.. +|+.||.||||..||++||..||.++++
T Consensus 558 sF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~ 637 (790)
T KOG0056|consen 558 SFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKP 637 (790)
T ss_pred eEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCC
Confidence 9999999999999999999999999999999998886532 5677999999999999999999999976
Q ss_pred C-CHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHH
Q 001055 253 F-EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRC 331 (1171)
Q Consensus 253 ~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l 331 (1171)
. ..+++.++.++++.++.+-.+|+|+.|.+||+|-.||||+|||||+||+++++|.+++|||+||+||..+++.|-..+
T Consensus 638 ~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL 717 (790)
T KOG0056|consen 638 SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAAL 717 (790)
T ss_pred CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHH
Confidence 3 567888899999999999999999999999999999999999999999999999999999999999999999997755
Q ss_pred HhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhc-chHHHHHHHHh
Q 001055 332 IRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN-GELFQKLMENA 388 (1171)
Q Consensus 332 ~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~ 388 (1171)
.+ ...++|.|+|.|+++.+-++|.|+++++|+|++.|+++|+..+ ++.|..|+..+
T Consensus 718 ~r-lca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~q 774 (790)
T KOG0056|consen 718 AR-LCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQAQ 774 (790)
T ss_pred HH-HhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHHH
Confidence 44 3468999999999999999999999999999999999999877 88999998643
No 100
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-50 Score=454.36 Aligned_cols=200 Identities=19% Similarity=0.305 Sum_probs=167.3
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhhe
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 864 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 864 (1171)
..+++.+|+|.|.++..+.+.++++.+..-+++++||+||+||||+++++.+...|..|.+-+. -|.+|
T Consensus 361 p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~-----------~r~ri 429 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRH-----------PRLRI 429 (582)
T ss_pred CeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeec-----------cccee
Confidence 3599999999998775579999999999999999999999999999999999999999998876 36789
Q ss_pred EEEcCCcccc-cccHHh--hc-cCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 865 GIIPQSPVLF-SGTVRF--NL-DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 865 ~~v~Q~~~lf-~~tv~~--nl-~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
+|..|.-.-+ +..+.. -+ ..++..+++++++.+...|+..-+... ...+||||||-||++|.....
T Consensus 430 ~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~----------si~~LSGGQKsrvafA~~~~~ 499 (582)
T KOG0062|consen 430 KYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQ----------SIASLSGGQKSRVAFAACTWN 499 (582)
T ss_pred cchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhc----------cccccCCcchhHHHHHHHhcC
Confidence 9999986533 223221 11 123344788999988887766544332 235799999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEe-cChhH
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEY-DTPEE 1007 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~-g~~~e 1007 (1171)
+|++|+||||||+||.++...+-++|+. .++.||+||||.+++.. |+.+|+.++|+|... |+..+
T Consensus 500 ~PhlLVLDEPTNhLD~dsl~AL~~Al~~--F~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~~~~ 566 (582)
T KOG0062|consen 500 NPHLLVLDEPTNHLDRDSLGALAKALKN--FNGGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGIDK 566 (582)
T ss_pred CCcEEEecCCCccccHHHHHHHHHHHHh--cCCcEEEEECcHHHHhhcCceeEEEcCCcEEeeeccHHH
Confidence 9999999999999999999999999988 56779999999999998 999999999999875 55433
No 101
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-49 Score=402.92 Aligned_cols=218 Identities=28% Similarity=0.481 Sum_probs=188.7
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCC-CChHHHhhheE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK-FGLMDLRKILG 865 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~-~~~~~~r~~i~ 865 (1171)
|+++||+++|+.. .+|+|||++|.+||+++|+|||||||||||+||.|+-+|++|+|.++|.++.. .+...+|+++|
T Consensus 3 i~i~~l~K~fg~~--~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG 80 (240)
T COG1126 3 IEIKNLSKSFGDK--EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG 80 (240)
T ss_pred EEEEeeeEEeCCe--EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC
Confidence 8999999999864 79999999999999999999999999999999999999999999999987743 36778999999
Q ss_pred EEcCCcccccc-cHHhhccCCC----CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~----~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
+|+|+..||+. ||.+|+.... ..+.++..+ .+.+++++ .|+....+..+.+||||||||+||||||..
T Consensus 81 mVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~-----~A~~lL~~--VGL~~ka~~yP~qLSGGQqQRVAIARALaM 153 (240)
T COG1126 81 MVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEARE-----KALELLEK--VGLADKADAYPAQLSGGQQQRVAIARALAM 153 (240)
T ss_pred eecccccccccchHHHHHHhhhHHHcCCCHHHHHH-----HHHHHHHH--cCchhhhhhCccccCcHHHHHHHHHHHHcC
Confidence 99999999976 9999997432 223322211 12233443 355555566667899999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCC
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 1013 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~ 1013 (1171)
+|+++|+|||||+|||+...++.+.++++.+ |.|+|+|||+|.++.. ||||+.|++|+|+++|+|+++..++.
T Consensus 154 ~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~ 228 (240)
T COG1126 154 DPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPK 228 (240)
T ss_pred CCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCC
Confidence 9999999999999999999999999999875 7899999999999998 99999999999999999999997754
No 102
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.2e-48 Score=433.65 Aligned_cols=240 Identities=35% Similarity=0.687 Sum_probs=223.5
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhhe
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 864 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 864 (1171)
|.|+++||+++|++..+++|+|+||+|++||++||+||||||||||+++|+|+++ ++|+|.++|.++..++...+|+.|
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 3589999999996544579999999999999999999999999999999999998 789999999999999989999999
Q ss_pred EEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001055 865 GIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 944 (1171)
Q Consensus 865 ~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 944 (1171)
+||||++.+|++|+++|++++...++++++++++.+++.+++.++|.++++.+++.+.+||||||||++|||||+++|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987666678889999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHhhc
Q 001055 945 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTG 1024 (1171)
Q Consensus 945 LlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~~ 1024 (1171)
|||||||++||+.+.+.+++.|++...++|||+||||++++..||||++|++|++++.|+|++++++ .+.|.+++...+
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~ 238 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE-KSHFKQAISPSD 238 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-cHHHHHHHhhcc
Confidence 9999999999999999999999988778999999999999988999999999999999999999985 467777777655
Q ss_pred hh
Q 001055 1025 AA 1026 (1171)
Q Consensus 1025 ~~ 1026 (1171)
..
T Consensus 239 ~~ 240 (275)
T cd03289 239 RL 240 (275)
T ss_pred hH
Confidence 43
No 103
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=3.1e-46 Score=459.49 Aligned_cols=351 Identities=15% Similarity=0.177 Sum_probs=268.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 8 IISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWEN--SFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPVLV 85 (1171)
Q Consensus 8 ~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~--~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (1171)
+.++.++..++..+..++..+.+.|.+.|+++||.|+.++ ....++.+..++..+...+..........+...+..++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (555)
T TIGR01194 172 AFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILIFIAAENFGQLLFFLL 251 (555)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566667777788888999999999999999999854 33444443333322222222211211111111111111
Q ss_pred H--HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-cC---CCC-----
Q 001055 86 T--VVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKI-LL---PNP----- 154 (1171)
Q Consensus 86 ~--~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~-~~---~~~----- 154 (1171)
. +++++. ..|.++.+.+++++.+...+..|+..+.+.+..+..+..+++||.++++.+++. .. +..
T Consensus 252 ~~~~~~~~~---~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~ 328 (555)
T TIGR01194 252 IGCALFAAA---MFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLL 328 (555)
T ss_pred HHHHHHHHH---HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccc
Confidence 1 111222 126899999999999999999999999999999999999999999998632111 00 100
Q ss_pred -CCCCCCCcEEEEeeEEEcCCCC--CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------
Q 001055 155 -PLTSGLPAISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------- 224 (1171)
Q Consensus 155 -~~~~~~~~i~~~~~s~~~~~~~--~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------- 224 (1171)
+.......|+++|++|+|+++. .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+..
T Consensus 329 ~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~ 408 (555)
T TIGR01194 329 LAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSA 408 (555)
T ss_pred cccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC
Confidence 0001123599999999997532 246999999999999999999999999999999999999999986532
Q ss_pred -----ecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHH
Q 001055 225 -----IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 299 (1171)
Q Consensus 225 -----~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~L 299 (1171)
.+..++|++|++++|++|+++|+. ...+++++.++++.+++.++++.+|+|++|. .+||||||||++|
T Consensus 409 ~~~~~~~~~i~~v~q~~~lf~~ti~~n~~--~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-----~~LSgGq~qRlal 481 (555)
T TIGR01194 409 DSRDDYRDLFSAIFADFHLFDDLIGPDEG--EHASLDNAQQYLQRLEIADKVKIEDGGFSTT-----TALSTGQQKRLAL 481 (555)
T ss_pred CCHHHHHhhCcEEccChhhhhhhhhcccc--cchhHHHHHHHHHHcCCchhhcccccccCCc-----ccCCHHHHHHHHH
Confidence 345699999999999999999962 3345677888999999999999999999884 6899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHh-hccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEe
Q 001055 300 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEE 368 (1171)
Q Consensus 300 AraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~-~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~ 368 (1171)
||||+++|+++||||||++||+++++.+.+.+.+ ....++|+|+|||+++.+..||+|++|++|++++.
T Consensus 482 aRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 482 ICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999886654 33468999999999999999999999999998864
No 104
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-47 Score=417.40 Aligned_cols=367 Identities=26% Similarity=0.399 Sum_probs=300.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 001055 17 KEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSI--PVLVTVVSFGMFT 94 (1171)
Q Consensus 17 ~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~ 94 (1171)
++..++.........+.|-+-+++|.|+-|+.+..++....+..-+...+...-..+..+....+ ..+....+.+...
T Consensus 112 r~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~ 191 (497)
T COG5265 112 RLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQTAIFSTGLRVMMTMSALG 191 (497)
T ss_pred HhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcHHH
Confidence 33333444445566689999999999999999988876655544444333222111111111111 1112223344555
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-CCC-CCCC-CCCCcEEEEeeEEE
Q 001055 95 LLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKIL-LPN-PPLT-SGLPAISIRNGYFS 171 (1171)
Q Consensus 95 ~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~-~~~-~~~~-~~~~~i~~~~~s~~ 171 (1171)
+..|.+|.+.+...-.++.++..|++.+...+..+.+++..++++.+.+..+.+.. .|+ ++.. .....+.+.|++|.
T Consensus 192 v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L~~~~~g~v~F~~V~F~ 271 (497)
T COG5265 192 VEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFA 271 (497)
T ss_pred HhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCCCCccccccccceEEEEEEEee
Confidence 67899999999999999999999999999999999999999999999887654321 122 2222 22335899999999
Q ss_pred cCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEEEEecCCCCC
Q 001055 172 WDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIF 239 (1171)
Q Consensus 172 ~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~ 239 (1171)
|.. .+++|+++||++++|+.+++||++|+||||++++|.+++++.+|.+.. +|+.||.|||+..||
T Consensus 272 y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLF 349 (497)
T COG5265 272 YDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLF 349 (497)
T ss_pred ccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceeh
Confidence 974 689999999999999999999999999999999999999999987643 345699999999999
Q ss_pred cccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCC
Q 001055 240 NATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSA 318 (1171)
Q Consensus 240 ~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~ 318 (1171)
++|+..||.+|++ ...+++.++.+.++++.++..+|+|++|.|||+|-.||||+|||||+||+++++|+||+|||+||+
T Consensus 350 NDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsa 429 (497)
T COG5265 350 NDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSA 429 (497)
T ss_pred hhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhH
Confidence 9999999999976 456788899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHH
Q 001055 319 LDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 386 (1171)
Q Consensus 319 LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 386 (1171)
||.++++.|...+.+ ..+|+|.++|.|+++.+-.+|.|++|++|+|++.|++++++..++.|++|+.
T Consensus 430 ldt~te~~iq~~l~~-~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~~g~ya~mw~ 496 (497)
T COG5265 430 LDTHTEQAIQAALRE-VSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEMWR 496 (497)
T ss_pred hhhhHHHHHHHHHHH-HhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHcCChHHHHhc
Confidence 999999999877654 4478999999999999999999999999999999999999999999998874
No 105
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-47 Score=395.01 Aligned_cols=223 Identities=30% Similarity=0.530 Sum_probs=193.5
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+|+|||++|++. .+++|+||+|++||.+.++|||||||||++++|.|+++|++|+|+++|.++++++..++|++|||
T Consensus 2 I~~~nvsk~y~~~--~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGY 79 (309)
T COG1125 2 IEFENVSKRYGNK--KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGY 79 (309)
T ss_pred ceeeeeehhcCCc--eeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhh
Confidence 7999999999854 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCcccccc-cHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcc--hhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 867 IPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLD--AQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~--~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
|-|...||+. ||.+|+..... .+.+++.+ .+.+.+.. .|++ ....+.+.+|||||+|||.+||||..
T Consensus 80 viQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~-----r~~ELl~l--vgL~p~~~~~RyP~eLSGGQQQRVGv~RALAa 152 (309)
T COG1125 80 VIQQIGLFPHLTVAENIATVPKLLGWDKERIKK-----RADELLDL--VGLDPSEYADRYPHELSGGQQQRVGVARALAA 152 (309)
T ss_pred hhhhcccCCCccHHHHHHhhhhhcCCCHHHHHH-----HHHHHHHH--hCCCHHHHhhcCchhcCcchhhHHHHHHHHhc
Confidence 9999999966 99999975432 23333321 12233332 2333 24455567899999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCChHH
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 1017 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 1017 (1171)
+|+|||+|||+++|||-++..+++.+.++.+ ++|+|+||||++++.. +|||.+|++|+|+.+++|+++++++...|-
T Consensus 153 dP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~FV 232 (309)
T COG1125 153 DPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFV 232 (309)
T ss_pred CCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHHHH
Confidence 9999999999999999999999999988764 7999999999999877 999999999999999999999998876654
Q ss_pred H
Q 001055 1018 K 1018 (1171)
Q Consensus 1018 ~ 1018 (1171)
+
T Consensus 233 ~ 233 (309)
T COG1125 233 E 233 (309)
T ss_pred H
Confidence 3
No 106
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.7e-47 Score=404.23 Aligned_cols=219 Identities=31% Similarity=0.478 Sum_probs=189.1
Q ss_pred EEEEeeEEEeCCC---CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---H
Q 001055 787 IKFEDVVLRYRPE---LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---L 860 (1171)
Q Consensus 787 i~~~~vs~~y~~~---~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~ 860 (1171)
|++++|++.|... ..++|+||||+|++||++||+|+||||||||++++.++-+|++|+|.+||.|+..++... +
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7999999999752 246999999999999999999999999999999999999999999999999988777554 5
Q ss_pred hhheEEEcCCccccc-ccHHhhccCC---CCCCHHH----HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001055 861 RKILGIIPQSPVLFS-GTVRFNLDPF---SEHSDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 932 (1171)
Q Consensus 861 r~~i~~v~Q~~~lf~-~tv~~nl~~~---~~~~~~~----i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl 932 (1171)
|++||+++|++.|++ .||.+|+.+- ...++++ +.+.|+.+ |+....+..+.+|||||||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelV-----------gL~dk~~~yP~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELV-----------GLSDKADRYPAQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHc-----------CChhhhccCchhcCcchhhHH
Confidence 788999999999986 5999999742 1223333 33444444 444555555679999999999
Q ss_pred HHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 933 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 933 ~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
+|||||+.+|+|||+|||||+|||+|.+.|.+.|++..+ |-||++|||.|+.+++ ||||.||++|+|+|.|+..++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 999999999999999999999999999999999998764 7899999999999999 9999999999999999999999
Q ss_pred hcCCChH
Q 001055 1010 SNEGSSF 1016 (1171)
Q Consensus 1010 ~~~~~~~ 1016 (1171)
.++....
T Consensus 231 ~~Pk~~~ 237 (339)
T COG1135 231 ANPKHAI 237 (339)
T ss_pred cCcchHH
Confidence 8765433
No 107
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-46 Score=380.87 Aligned_cols=203 Identities=32% Similarity=0.497 Sum_probs=180.7
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecCc
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 228 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~ 228 (1171)
.|+++|++++|+. ..+|+|||++|++||+++|+|||||||||||+||.|+.+|++|.+.. +|.+
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 5899999999973 57999999999999999999999999999999999999999886532 3456
Q ss_pred EEEEecCCCCC-cccHHHHHhcCC----CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHH
Q 001055 229 VAYVPQVSWIF-NATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 299 (1171)
Q Consensus 229 i~~v~Q~~~l~-~~Tv~eni~~g~----~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~L 299 (1171)
+|+|+|+..|| ..||.|||.++. .... ++..+.++..+|.+..+..|. +|||||||||||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~-----------qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPA-----------QLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcc-----------ccCcHHHHHHHH
Confidence 99999999998 689999999873 1122 334456788899888888884 899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhcc
Q 001055 300 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNG 378 (1171)
Q Consensus 300 AraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 378 (1171)
||||+.+|+++|+|||||+|||+.+..+.+.+......|.|.|+|||++.|... +|||+.|++|+++++|+++++..++
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 999999999999999999999999999999888888899999999999999987 5999999999999999999987664
No 108
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=5.7e-44 Score=439.42 Aligned_cols=347 Identities=21% Similarity=0.303 Sum_probs=248.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 6 TFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWE---NSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIP 82 (1171)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e---~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~ 82 (1171)
.++.+++++..++.++..++..+.+.|.++|+++++ ++.+ +.+.+++.+..++..+...+..........+.....
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (547)
T PRK10522 165 FVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFHLSAVNWSNIMM 243 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 345566777788888899999999999999999997 3333 344455544333322222222222222111111111
Q ss_pred HHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCC
Q 001055 83 VLVTVVSFGMFTLLGG---DLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSG 159 (1171)
Q Consensus 83 ~~~~~~~~g~~~~~~~---~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~ 159 (1171)
++.++++.+.++ ..+.+.+.++..+...+..|+..+...+..+..+..+++||.+++..+++...+.+...+.
T Consensus 244 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~~~~~~~~~ 319 (547)
T PRK10522 244 ----LGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEFPRPQAFPD 319 (547)
T ss_pred ----HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccCc
Confidence 111222222221 1222222222222333567999999999999999999999999975443211111111111
Q ss_pred CCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecC
Q 001055 160 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRG 227 (1171)
Q Consensus 160 ~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~ 227 (1171)
...|+++|++|+|+. ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. +++
T Consensus 320 ~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~ 397 (547)
T PRK10522 320 WQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRK 397 (547)
T ss_pred CceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhh
Confidence 236999999999973 357999999999999999999999999999999999999999986532 345
Q ss_pred cEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCC
Q 001055 228 TVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 307 (1171)
Q Consensus 228 ~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~ 307 (1171)
.|+|++|++.+|++|+++| +...+++++.++++.+++...... +++. .+|.+||||||||++|||||+++|
T Consensus 398 ~i~~v~q~~~lf~~ti~~n---~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-----~~G~~LSgGq~qRl~lARal~~~~ 468 (547)
T PRK10522 398 LFSAVFTDFHLFDQLLGPE---GKPANPALVEKWLERLKMAHKLEL-EDGR-----ISNLKLSKGQKKRLALLLALAEER 468 (547)
T ss_pred heEEEecChhHHHHhhccc---cCchHHHHHHHHHHHcCCchhhhc-cccC-----CCCCCCCHHHHHHHHHHHHHhcCC
Confidence 7999999999999999999 334556667777777777665542 2221 136799999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHhhc-cCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEe
Q 001055 308 DVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEE 368 (1171)
Q Consensus 308 ~vllLDEpts~LD~~~~~~l~~~l~~~~-~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~ 368 (1171)
+++|||||||+||+++++.+.+.+.+.. ..++|+|+|||+++.+..+|+|++|++|++++.
T Consensus 469 ~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 469 DILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999988776443 247999999999999999999999999999875
No 109
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=2e-43 Score=440.37 Aligned_cols=350 Identities=18% Similarity=0.199 Sum_probs=277.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 001055 6 TFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIP--- 82 (1171)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~--- 82 (1171)
.++.+++.+..++.++..++-.+...|.++|+++||.|+.|+.+..++.+..++..+..++.....+....+...+.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 336 (659)
T TIGR00954 257 TKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKYT 336 (659)
T ss_pred HHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44556677888888999999999999999999999999999999999988777777666665555544443333322
Q ss_pred -HHHHHHHHHHHHHh-c----CCCCHHHHHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccC-
Q 001055 83 -VLVTVVSFGMFTLL-G----GDLTPARAFT-SL---SLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILL- 151 (1171)
Q Consensus 83 -~~~~~~~~g~~~~~-~----~~l~~~~~f~-~l---~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~- 151 (1171)
..+.++..|...+. . |.+|.+..+. ++ .++..+..|+..+.+.+..+.++..+.+||.++++.+++...
T Consensus 337 ~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~ 416 (659)
T TIGR00954 337 WSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSG 416 (659)
T ss_pred HHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22222233332232 2 6788887555 22 335667889999999999999999999999999976432110
Q ss_pred -------CC-C----------------CCCCCCCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHH
Q 001055 152 -------PN-P----------------PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSL 207 (1171)
Q Consensus 152 -------~~-~----------------~~~~~~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTL 207 (1171)
+. . ........|+++|++|+|++ ++++|+|+||++++||+++|+||||||||||
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~--~~~il~~isl~i~~Ge~~~IvG~nGsGKSTL 494 (659)
T TIGR00954 417 NFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--GDVLIESLSFEVPSGNHLLICGPNGCGKSSL 494 (659)
T ss_pred cccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC--CCeeeecceEEECCCCEEEEECCCCCCHHHH
Confidence 00 0 00012235999999999973 3579999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCcccee-cCcEEEEecCCCCCcccHHHHHhcCC--------CCCHHHHHHHHHHcCchHHHhcCCCCC
Q 001055 208 ISAMLGELPPVSDASAVI-RGTVAYVPQVSWIFNATVRDNILFGS--------AFEPARYEKAIDVTSLQHDLDLLPGGD 278 (1171)
Q Consensus 208 l~~l~G~~~~~~g~~~~~-~~~i~~v~Q~~~l~~~Tv~eni~~g~--------~~~~~~~~~~~~~~~l~~~~~~~~~~~ 278 (1171)
+++|+|+++|++|.+... +..++||||+|.++++||+|||.++. ...++++.++++.+++.+.++. +.|+
T Consensus 495 l~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~ 573 (659)
T TIGR00954 495 FRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGW 573 (659)
T ss_pred HHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCc
Confidence 999999999988765432 45699999999999889999999863 1345677888999999988877 7788
Q ss_pred ccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEE
Q 001055 279 VTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 358 (1171)
Q Consensus 279 ~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~ 358 (1171)
+|..+ .+.+||||||||++|||||+++|+++||||||++||+++++++.+.+.+ .|+|+|+|||+++.+..||+++
T Consensus 574 ~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~~~~~~~d~il 649 (659)
T TIGR00954 574 SAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKSLWKYHEYLL 649 (659)
T ss_pred ccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCchHHHHhCCEEE
Confidence 88765 5679999999999999999999999999999999999999999887644 3799999999999999999999
Q ss_pred EEeC
Q 001055 359 LVHE 362 (1171)
Q Consensus 359 ~l~~ 362 (1171)
+|+.
T Consensus 650 ~l~~ 653 (659)
T TIGR00954 650 YMDG 653 (659)
T ss_pred EEeC
Confidence 9973
No 110
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-45 Score=414.79 Aligned_cols=227 Identities=23% Similarity=0.359 Sum_probs=197.7
Q ss_pred CCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCEecCC
Q 001055 780 GWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK 854 (1171)
Q Consensus 780 ~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~-----p~~G~I~i~g~~i~~ 854 (1171)
.|+..+.|+++|++++|++..+++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+++..
T Consensus 74 ~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 74 DFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred CCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 477788899999999997544579999999999999999999999999999999999996 579999999999973
Q ss_pred --CChHHHhhheEEEcCCcccccccHHhhccCCC---CCCHHHH-----HHHHHHhcHHHHHHHccCCcchhhhcCCCCC
Q 001055 855 --FGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS---EHSDADL-----WEALERAHLKDAIRRNSLGLDAQVSEAGENF 924 (1171)
Q Consensus 855 --~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~~~~~i-----~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~L 924 (1171)
.+...+|+.++||||+|.+|++|+++|+.+.. ..++.+. .++++.+++ +.++++.+++.+.+|
T Consensus 154 ~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L-------~~~l~~~~~~~~~~L 226 (329)
T PRK14257 154 KKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL-------WDEVKDDLDKAGNAL 226 (329)
T ss_pred cccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCC-------cchhhhhhhCCcccC
Confidence 34567889999999999999999999998432 2333333 333444443 335567788999999
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEec
Q 001055 925 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 925 SgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
||||||||+|||||+++|+||||||||++||+.+...+++.|+++.+++|+|+|||+++++.. ||||++|++|+|++.|
T Consensus 227 SgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g 306 (329)
T PRK14257 227 SGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG 306 (329)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999998888999999999999988 9999999999999999
Q ss_pred ChhHHhhcCC
Q 001055 1004 TPEELLSNEG 1013 (1171)
Q Consensus 1004 ~~~el~~~~~ 1013 (1171)
+++++...+.
T Consensus 307 ~~~~l~~~~~ 316 (329)
T PRK14257 307 ETKTIFIHPK 316 (329)
T ss_pred CHHHHhcCCC
Confidence 9999987543
No 111
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=4.7e-45 Score=392.61 Aligned_cols=212 Identities=34% Similarity=0.545 Sum_probs=187.7
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++|++|+|++. ++|+|+||+|++||+++|+||||||||||+|+|+|+++|.+|+|.+||+++.+++.+++.++++|
T Consensus 3 L~~~~ls~~y~~~--~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 3 LEVENLSFGYGGK--PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred eEEEEEEEEECCe--eEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 8999999999854 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCcc-cccccHHhhccC--------CCCCC--H-HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001055 867 IPQSPV-LFSGTVRFNLDP--------FSEHS--D-ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 934 (1171)
Q Consensus 867 v~Q~~~-lf~~tv~~nl~~--------~~~~~--~-~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~l 934 (1171)
|||.+. -|..||+|-+.+ +...+ | +.+.++++..++.++.++ ...+||||||||+.|
T Consensus 81 vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-----------~~~~LSGGerQrv~i 149 (258)
T COG1120 81 VPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-----------PVDELSGGERQRVLI 149 (258)
T ss_pred eccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-----------cccccChhHHHHHHH
Confidence 999974 456699885532 22222 2 246777888777666544 346899999999999
Q ss_pred HHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 935 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 935 Arall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
||||+++|+||+|||||++||....-.+++.++++.+ +.|+|+|.||++.+.+ ||++++|++|++++.|+|+|.+..
T Consensus 150 ArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~ 229 (258)
T COG1120 150 ARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTE 229 (258)
T ss_pred HHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCH
Confidence 9999999999999999999999999999999999873 6999999999999877 999999999999999999998853
No 112
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.6e-45 Score=370.31 Aligned_cols=219 Identities=26% Similarity=0.449 Sum_probs=197.2
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC-----ceEEECCEecCC--CChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER-----GRILIDGFDIAK--FGLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~-----G~I~i~g~~i~~--~~~~ 858 (1171)
.++++|+++.|+.. .+|+|||+.|++++++|++|||||||||||+++.++.+..+ |+|.++|++|-+ .+.-
T Consensus 7 ~~~~~~l~~yYg~~--~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 7 AIEVRDLNLYYGDK--HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred eeEecceeEEECch--hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence 48999999999854 69999999999999999999999999999999999998875 999999999976 4688
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCCC-------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFSE-------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 931 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~-------~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqr 931 (1171)
.+|++||+|+|.|.-|..||.||+.+... .-++.++++|+.+.+++.+.. .+++.+..|||||+||
T Consensus 85 ~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQQR 157 (253)
T COG1117 85 ELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQQR 157 (253)
T ss_pred HHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHHHH
Confidence 89999999999999999999999976432 124557888999999887643 2345667899999999
Q ss_pred HHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 932 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 932 l~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
|||||||.-+|+|||||||||+|||.+...|++.|.++.++-||++|||.|.-+.+ +|++..+..|+++|+|+.+++..
T Consensus 158 LcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~ 237 (253)
T COG1117 158 LCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFT 237 (253)
T ss_pred HHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhc
Confidence 99999999999999999999999999999999999999888999999999999888 99999999999999999999987
Q ss_pred cCC
Q 001055 1011 NEG 1013 (1171)
Q Consensus 1011 ~~~ 1013 (1171)
++.
T Consensus 238 ~P~ 240 (253)
T COG1117 238 NPK 240 (253)
T ss_pred Ccc
Confidence 653
No 113
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.1e-44 Score=374.93 Aligned_cols=215 Identities=30% Similarity=0.519 Sum_probs=187.9
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---Hhh
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LRK 862 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~r~ 862 (1171)
.|++++|+++|+++ .+++||||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++.+++..+ +|+
T Consensus 8 ~I~vr~v~~~fG~~--~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 8 LIEVRGVTKSFGDR--VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred eEEEeeeeeecCCE--EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 59999999999765 7999999999999999999999999999999999999999999999999999888654 688
Q ss_pred heEEEcCCcccccc-cHHhhccCC----CCCCHHHHHH----HHHHhcHHHHHHHccCCcchh-hhcCCCCCChhHHHHH
Q 001055 863 ILGIIPQSPVLFSG-TVRFNLDPF----SEHSDADLWE----ALERAHLKDAIRRNSLGLDAQ-VSEAGENFSVGQRQLL 932 (1171)
Q Consensus 863 ~i~~v~Q~~~lf~~-tv~~nl~~~----~~~~~~~i~~----~l~~~~~~~~i~~lp~gl~~~-~~~~~~~LSgGqkqrl 932 (1171)
++|+++|+..||+. ||.||+.+. ....+..+.+ .++.+ |+... ....+..||||+++|+
T Consensus 86 r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~V-----------GL~~~~~~~~PsELSGGM~KRv 154 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELV-----------GLRGAAADLYPSELSGGMRKRV 154 (263)
T ss_pred heeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhc-----------CCChhhhhhCchhhcchHHHHH
Confidence 99999999999976 999999752 2233443332 23344 44443 3445578999999999
Q ss_pred HHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 933 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 933 ~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
+||||+.-+|+||++||||+||||.+...+.+.|+++.+ +.|+++||||++++.. ||||+++.+|+|+..|+++|+.
T Consensus 155 aLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~ 234 (263)
T COG1127 155 ALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELL 234 (263)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999998765 7899999999999988 9999999999999999999999
Q ss_pred hcCC
Q 001055 1010 SNEG 1013 (1171)
Q Consensus 1010 ~~~~ 1013 (1171)
+..+
T Consensus 235 ~sd~ 238 (263)
T COG1127 235 ASDD 238 (263)
T ss_pred hCCC
Confidence 7644
No 114
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=6.1e-44 Score=393.05 Aligned_cols=231 Identities=37% Similarity=0.603 Sum_probs=208.2
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++||+++|+...+++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 47899999996433469999999999999999999999999999999999999999999999999987777778889999
Q ss_pred EcCCcccccccHHhhccCCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 001055 867 IPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 945 (1171)
Q Consensus 867 v~Q~~~lf~~tv~~nl~~~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iL 945 (1171)
+||++.+|+.|+.+|+.+... .....+.+.++..++.++++.+|.++++..+..+.+|||||||||+|||||+.+|++|
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 999999998899999976432 3345566777778889999999999999888899999999999999999999999999
Q ss_pred EEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHH
Q 001055 946 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSK 1018 (1171)
Q Consensus 946 lLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~ 1018 (1171)
||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|++++++... +.|..
T Consensus 161 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~-~~~~~ 232 (237)
T cd03252 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAEN-GLYAY 232 (237)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhcc-ChHHH
Confidence 9999999999999999999999987789999999999999779999999999999999999998653 34443
No 115
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-43 Score=387.53 Aligned_cols=199 Identities=22% Similarity=0.324 Sum_probs=154.5
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.+-+.||+|.|++. .|.+++++|-|.--.+|+||||||.|||||+++|.|-++|+.|+.+-+ .|-+||
T Consensus 586 vLGlH~VtFgy~gq-kpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-----------hrL~iG 653 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQ-KPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-----------HRLRIG 653 (807)
T ss_pred eeecccccccCCCC-CchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-----------ceeeee
Confidence 47899999999765 479999999999999999999999999999999999999999987654 455799
Q ss_pred EEcCCcc--cc-cccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhh-cCCCCCChhHHHHHHHHHHhccC
Q 001055 866 IIPQSPV--LF-SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVS-EAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 866 ~v~Q~~~--lf-~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~-~~~~~LSgGqkqrl~lArall~~ 941 (1171)
+.-|... |- ..|..|.|.-.-...-++.+..|...|+. ++.. -....||||||-||+||-.-++.
T Consensus 654 ~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~-----------sHAHTikikdLSGGQKaRValaeLal~~ 722 (807)
T KOG0066|consen 654 WFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLA-----------SHAHTIKIKDLSGGQKARVALAELALGG 722 (807)
T ss_pred chhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhh-----------hccceEeeeecCCcchHHHHHHHHhcCC
Confidence 9888763 22 23666655311122234455555554443 3221 13457999999999999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcC-EEEEEeCcEEEEe-cChhHHh
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCD-RILLLDSGRVLEY-DTPEELL 1009 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d-~i~vl~~G~i~~~-g~~~el~ 1009 (1171)
|+||||||||++||.++...+-++|.+ ..+.||+||||-..+...| ..||+++..|-+. |..+++.
T Consensus 723 PDvlILDEPTNNLDIESIDALaEAIne--y~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeDYk 790 (807)
T KOG0066|consen 723 PDVLILDEPTNNLDIESIDALAEAINE--YNGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFEDYK 790 (807)
T ss_pred CCEEEecCCCCCcchhhHHHHHHHHHh--ccCcEEEEecccceeeecCceEEEEccCChhhccccHHHHH
Confidence 999999999999999999999999998 4678999999999987733 4666776556554 6655543
No 116
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=9.1e-44 Score=395.89 Aligned_cols=236 Identities=50% Similarity=0.825 Sum_probs=214.8
Q ss_pred CccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhh
Q 001055 784 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 863 (1171)
Q Consensus 784 ~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 863 (1171)
.+.|+++|++++|+....++++|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.
T Consensus 17 ~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~ 96 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSR 96 (257)
T ss_pred CceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhh
Confidence 46799999999997533469999999999999999999999999999999999999999999999999988888888999
Q ss_pred eEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001055 864 LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 943 (1171)
Q Consensus 864 i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~ 943 (1171)
|+|+||++.+|.+|+++|+.+........+.++++..++.++++.+|.|+++.+++.+.+||||||||++|||||+++|+
T Consensus 97 i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 176 (257)
T cd03288 97 LSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSS 176 (257)
T ss_pred EEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999997643334556778888889999999999999999999999999999999999999999999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHH
Q 001055 944 ILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1019 (1171)
Q Consensus 944 iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~ 1019 (1171)
+|||||||++||+.+...+.+.|++..+++|+|++||+++.+..||||++|++|++++.|+++++.+..++.|..+
T Consensus 177 llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 252 (257)
T cd03288 177 ILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASL 252 (257)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHH
Confidence 9999999999999999999999998777899999999999998899999999999999999999987655445443
No 117
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.1e-43 Score=434.05 Aligned_cols=199 Identities=28% Similarity=0.386 Sum_probs=164.1
Q ss_pred CCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCceEEECCEecCCCChHHHhhheEEEcCCccccc-
Q 001055 799 ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFS- 875 (1171)
Q Consensus 799 ~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p--~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~- 875 (1171)
+.+.+|+||+=-++||-.+||+|+||||||||+++|+|-..- .+|+|+++|.+..+ +..++.+|||.|++.-..
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCcc
Confidence 445799999999999999999999999999999999987532 47999999998754 678999999999986544
Q ss_pred ccHHhhccCCC------CCCHHH----HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC-CE
Q 001055 876 GTVRFNLDPFS------EHSDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS-KI 944 (1171)
Q Consensus 876 ~tv~~nl~~~~------~~~~~~----i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p-~i 944 (1171)
-||||-|.+.+ +.++++ ++++++..++.++- |..++..|..||..||+||.||--|+.+| .|
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~-------daiVG~~G~GLs~eQRKrLTIgVELvA~P~~i 951 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYA-------DALVGLPGSGLSTEQRKRLTIGVELVANPSSI 951 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhh-------hhhccCCCCCCCHHHhceeeEEEEEecCCcee
Confidence 49999886421 222222 44455554444332 35577788899999999999999999999 88
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhh--hhhcCEEEEEe-CcEEEEecChhH
Q 001055 945 LVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT--IIDCDRILLLD-SGRVLEYDTPEE 1007 (1171)
Q Consensus 945 LlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~--~~~~d~i~vl~-~G~i~~~g~~~e 1007 (1171)
|+|||||||||..+...|.+.++++. .|+||+++-|.++. .+..|+++.|+ .|+.+..|+..+
T Consensus 952 lFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 952 LFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred EEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 99999999999999999999999977 48999999999876 46699999998 799999987644
No 118
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.5e-43 Score=385.88 Aligned_cols=219 Identities=68% Similarity=1.064 Sum_probs=204.7
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++|++++|++..+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRIS 81 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEE
Confidence 48999999999754346999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 001055 866 IIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 945 (1171)
Q Consensus 866 ~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iL 945 (1171)
|+||++.++..|+++|+.++.....+++.++++..++.+++.++|.|+++..++.+.+||||||||++|||||+.+|++|
T Consensus 82 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ll 161 (221)
T cd03244 82 IIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKIL 161 (221)
T ss_pred EECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999989999999876555667788889999999999999999999998899999999999999999999999999
Q ss_pred EEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecC
Q 001055 946 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDT 1004 (1171)
Q Consensus 946 lLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~ 1004 (1171)
||||||++||+.+++.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 162 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 162 VLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999877799999999999998899999999999998875
No 119
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.1e-44 Score=380.80 Aligned_cols=209 Identities=29% Similarity=0.446 Sum_probs=181.6
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.|+++|++++|+.. ++|+||||+|++|+++||+||||||||||+|+|+|+++|.+|+|.+.|.++++... +.+||
T Consensus 4 ~i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~Ig 78 (254)
T COG1121 4 MIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIG 78 (254)
T ss_pred EEEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEE
Confidence 49999999999865 59999999999999999999999999999999999999999999999988765332 46899
Q ss_pred EEcCCc---ccccccHHhhccCCC-----------CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001055 866 IIPQSP---VLFSGTVRFNLDPFS-----------EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 931 (1171)
Q Consensus 866 ~v~Q~~---~lf~~tv~~nl~~~~-----------~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqr 931 (1171)
||||.. .-|+.||+|-+.... ....+.+.++|+++++.++..+ ...+|||||+||
T Consensus 79 YVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-----------~i~~LSGGQ~QR 147 (254)
T COG1121 79 YVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-----------QIGELSGGQKQR 147 (254)
T ss_pred EcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-----------cccccCcHHHHH
Confidence 999966 346779999765321 1123678888888877765543 456899999999
Q ss_pred HHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 932 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 932 l~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
+.|||||+++|++|+|||||+|+|+.++..+.+.|+++.+ |+|||+||||++.+.. ||+|+.|++ ++...|++++..
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~-~~~~~G~~~~~~ 226 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNR-HLIASGPPEEVL 226 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcC-eeEeccChhhcc
Confidence 9999999999999999999999999999999999999875 8999999999999887 999999955 899999999987
Q ss_pred hc
Q 001055 1010 SN 1011 (1171)
Q Consensus 1010 ~~ 1011 (1171)
+.
T Consensus 227 ~~ 228 (254)
T COG1121 227 TE 228 (254)
T ss_pred CH
Confidence 53
No 120
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.9e-43 Score=383.90 Aligned_cols=225 Identities=43% Similarity=0.700 Sum_probs=206.5
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++|++++|++. +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 2 ~l~~~~l~~~~~~~-~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (229)
T cd03254 2 EIEFENVNFSYDEK-KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIG 80 (229)
T ss_pred eEEEEEEEEecCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEE
Confidence 48999999999642 36999999999999999999999999999999999999999999999999998777777888999
Q ss_pred EEcCCcccccccHHhhccCCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001055 866 IIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 944 (1171)
Q Consensus 866 ~v~Q~~~lf~~tv~~nl~~~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 944 (1171)
|+||++.+|..|+++|+.++.. ....++.++++..++.++++++|.|+++..+....+||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~l 160 (229)
T cd03254 81 VVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKI 160 (229)
T ss_pred EecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999998899999986543 345667778888899999999999999999888999999999999999999999999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhc
Q 001055 945 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 945 LlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+..||++++|++|++++.|+++++.+.
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 161 LILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 9999999999999999999999998678999999999999878999999999999999998888754
No 121
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.3e-43 Score=384.90 Aligned_cols=226 Identities=38% Similarity=0.644 Sum_probs=205.9
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++|++++|++...++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 47899999997543369999999999999999999999999999999999999999999999999887777778889999
Q ss_pred EcCCcccccccHHhhccCCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 001055 867 IPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 945 (1171)
Q Consensus 867 v~Q~~~lf~~tv~~nl~~~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iL 945 (1171)
+||++.+|..|+++|+.++.. ....++.+.++..++.++++.+|.++++..+....+||||||||++|||||+++|++|
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 160 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPIL 160 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999998999999986533 3445666777778899999999999998888889999999999999999999999999
Q ss_pred EEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcC
Q 001055 946 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 1012 (1171)
Q Consensus 946 lLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~ 1012 (1171)
||||||++||+.+.+.+.+.|++..++.|+|++||+++.+..||++++|++|++++.|+++++....
T Consensus 161 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 227 (234)
T cd03251 161 ILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQG 227 (234)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcC
Confidence 9999999999999999999999987789999999999999889999999999999999999987653
No 122
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.4e-43 Score=395.47 Aligned_cols=217 Identities=26% Similarity=0.417 Sum_probs=193.0
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.|+++||++.|++. .+|+|+||+|+.||.++|+|||||||||||++|+|+.+|++|+|.|||.++++++|.+ +.|+
T Consensus 3 ~i~l~~v~K~yg~~--~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~ia 78 (338)
T COG3839 3 ELELKNVRKSFGSF--EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIA 78 (338)
T ss_pred EEEEeeeEEEcCCc--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEE
Confidence 48999999999753 2999999999999999999999999999999999999999999999999999998865 7899
Q ss_pred EEcCCcccccc-cHHhhccCCCCC-------CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFSEH-------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 937 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~~~-------~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 937 (1171)
+|||+..||+. ||++|+.+.-.. .+.++.++++..++.+++++.| .+||||||||||||||
T Consensus 79 mVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaRA 147 (338)
T COG3839 79 MVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALARA 147 (338)
T ss_pred EEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHHH
Confidence 99999999976 999999864221 2455677777777666666655 6799999999999999
Q ss_pred hccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCC
Q 001055 938 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 1014 (1171)
Q Consensus 938 ll~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~ 1014 (1171)
|+++|+++|||||.|+||+..+..+...|+++.+ +.|+|.||||-.++.. +|||+||++|+|.+.|+|.|+..++.+
T Consensus 148 lVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n 227 (338)
T COG3839 148 LVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPAN 227 (338)
T ss_pred HhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccc
Confidence 9999999999999999999999999999988654 6899999999999877 999999999999999999999987765
Q ss_pred hHH
Q 001055 1015 SFS 1017 (1171)
Q Consensus 1015 ~~~ 1017 (1171)
.|-
T Consensus 228 ~fV 230 (338)
T COG3839 228 LFV 230 (338)
T ss_pred hhh
Confidence 554
No 123
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-43 Score=366.73 Aligned_cols=223 Identities=30% Similarity=0.463 Sum_probs=185.2
Q ss_pred cEEEEeeEEEeCCCC--CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCCh-HHHhh
Q 001055 786 SIKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL-MDLRK 862 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~--~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~-~~~r~ 862 (1171)
.++++|+++.|+.+. .++|+||||+|.+||++||+|+||||||||.++|+|+.+|++|+|.++|.++....+ ...++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 389999999997642 149999999999999999999999999999999999999999999999987765433 34677
Q ss_pred heEEEcCCcc--ccc-ccHHhhcc-CCCC----CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001055 863 ILGIIPQSPV--LFS-GTVRFNLD-PFSE----HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 934 (1171)
Q Consensus 863 ~i~~v~Q~~~--lf~-~tv~~nl~-~~~~----~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~l 934 (1171)
.|.+|||||. +-+ .||++-|. +... ....++.++++.+++.+ ....+.+.+|||||+||+||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~----------~~l~R~P~eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPP----------SFLDRRPHELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCH----------HHHhcCchhcChhHHHHHHH
Confidence 8999999995 222 27776653 2211 12345777777776643 22334456799999999999
Q ss_pred HHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 935 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 935 Arall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
||||.-+|++||||||||+||+-..+.|++.|.++.+ +-|.|+||||+..+.. ||||+||++|+++|.++.+++...
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 9999999999999999999999999999999999875 4599999999999998 999999999999999999999877
Q ss_pred CCChHHH
Q 001055 1012 EGSSFSK 1018 (1171)
Q Consensus 1012 ~~~~~~~ 1018 (1171)
....|.+
T Consensus 233 ~~h~ytr 239 (252)
T COG1124 233 PSHPYTR 239 (252)
T ss_pred CccHHHH
Confidence 5545554
No 124
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=3e-43 Score=402.89 Aligned_cols=219 Identities=27% Similarity=0.437 Sum_probs=186.6
Q ss_pred EEEEeeEEEeCCC--CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---Hh
Q 001055 787 IKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LR 861 (1171)
Q Consensus 787 i~~~~vs~~y~~~--~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~r 861 (1171)
|+++||+++|+.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..++..+ .|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999632 236999999999999999999999999999999999999999999999999998877654 47
Q ss_pred hheEEEcCCccccc-ccHHhhccCCC---CCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001055 862 KILGIIPQSPVLFS-GTVRFNLDPFS---EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 933 (1171)
Q Consensus 862 ~~i~~v~Q~~~lf~-~tv~~nl~~~~---~~~~~----~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~ 933 (1171)
++|||+||++.+|. .|+++|+.+.. ..... ++.+.++.+ |+....+..+.+||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~v-----------gL~~~~~~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALV-----------GLGDKHDSYPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CCchhhhCChhhCCHHHHHHHH
Confidence 78999999999985 59999996421 12222 233334443 4444455566789999999999
Q ss_pred HHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 934 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 934 lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
|||||+.+|++||||||||+||+.+...+++.|+++.+ +.|||+|||+++.+.. ||+|++|++|+|++.|+++++..
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999999764 7899999999999977 99999999999999999999987
Q ss_pred cCCChH
Q 001055 1011 NEGSSF 1016 (1171)
Q Consensus 1011 ~~~~~~ 1016 (1171)
.+...+
T Consensus 231 ~p~~~~ 236 (343)
T TIGR02314 231 HPKTPL 236 (343)
T ss_pred CCCcHH
Confidence 654433
No 125
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-43 Score=396.09 Aligned_cols=217 Identities=28% Similarity=0.436 Sum_probs=192.5
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++||+++|++ ..+++|+||+|++||.++|+|||||||||||++|+|+..|++|+|.++|+++..++++ ++.||
T Consensus 5 ~l~i~~v~k~yg~--~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ig 80 (352)
T COG3842 5 ALEIRNVSKSFGD--FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPIG 80 (352)
T ss_pred eEEEEeeeeecCC--eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcccc
Confidence 4999999999984 3799999999999999999999999999999999999999999999999999998874 57899
Q ss_pred EEcCCcccccc-cHHhhccCCCC----CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFSE----HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 936 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~~----~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 936 (1171)
+|+|+..||+. ||++|+.|.-. ..+ +.+.++++.+++.++-.+.| .+|||||+|||+|||
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALAR 149 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALAR 149 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHHH
Confidence 99999999976 99999986432 222 35677777777766655544 689999999999999
Q ss_pred HhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCC
Q 001055 937 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 1013 (1171)
Q Consensus 937 all~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~ 1013 (1171)
||..+|++||||||.|+||..-+..++.-|+++.+ |.|.|+||||-+++.. +|||.||++|+|...|+|+|+...+.
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~ 229 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPA 229 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcc
Confidence 99999999999999999999999999999888653 7899999999999766 99999999999999999999998776
Q ss_pred ChHH
Q 001055 1014 SSFS 1017 (1171)
Q Consensus 1014 ~~~~ 1017 (1171)
..|-
T Consensus 230 ~~fV 233 (352)
T COG3842 230 TRFV 233 (352)
T ss_pred hHHH
Confidence 5554
No 126
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.1e-43 Score=351.37 Aligned_cols=206 Identities=28% Similarity=0.433 Sum_probs=184.9
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---Hhhh
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LRKI 863 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~r~~ 863 (1171)
|+|+||+++|+.+ +++|+||||+|++||.+-|+||||||||||+|+|++..+|+.|+|.++|.|++++...+ +|++
T Consensus 2 I~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 7999999999877 67999999999999999999999999999999999999999999999999998887665 7999
Q ss_pred eEEEcCCccccc-ccHHhhccCCC---C----CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001055 864 LGIIPQSPVLFS-GTVRFNLDPFS---E----HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 935 (1171)
Q Consensus 864 i~~v~Q~~~lf~-~tv~~nl~~~~---~----~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 935 (1171)
||+|+||.-|.. .||.||+.+-- . ....++.++|+.+|+.+-...+| .+||||||||++||
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaIA 149 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAIA 149 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHHH
Confidence 999999998775 49999997421 1 12456778888888888777777 57999999999999
Q ss_pred HHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecC
Q 001055 936 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 1004 (1171)
Q Consensus 936 rall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~ 1004 (1171)
||++.+|++||-||||-+|||++...|++.+.+... |.||++.|||.+.+.. --|++.+++|+++....
T Consensus 150 RAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 150 RAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999999999999764 8999999999999988 68999999999987644
No 127
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.4e-43 Score=378.19 Aligned_cols=214 Identities=29% Similarity=0.503 Sum_probs=190.7
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecC-CCChHHHhhhe
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA-KFGLMDLRKIL 864 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~-~~~~~~~r~~i 864 (1171)
.++++|++|+|++. .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.++|.++. ..+...+|+++
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 38999999999876 57999999999999999999999999999999999999999999999999988 47788899999
Q ss_pred EEEcCCc--ccccccHHhhccCCCC---CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001055 865 GIIPQSP--VLFSGTVRFNLDPFSE---HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 935 (1171)
Q Consensus 865 ~~v~Q~~--~lf~~tv~~nl~~~~~---~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 935 (1171)
|||+|+| .+|..||.+.+.+... ... .++.++++.+++.++.++ ...+|||||||||+||
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r-----------~p~~LSGGqkqRvaIA 150 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDR-----------PPFNLSGGQKQRVAIA 150 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccC-----------CccccCCcceeeHHhh
Confidence 9999999 6889999999886542 233 335566666666655444 4468999999999999
Q ss_pred HHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 936 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 936 rall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
.+|+.+|++|||||||++||+...+.+.+.++++.. ++|+|++|||++.+.. |||+++|++|+++.+|+|.++.++
T Consensus 151 ~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 151 GVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred HHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 999999999999999999999999999999999875 4799999999999988 999999999999999999998865
No 128
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.1e-43 Score=360.44 Aligned_cols=212 Identities=28% Similarity=0.414 Sum_probs=183.7
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCC---hHHHhh
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDLRK 862 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~---~~~~r~ 862 (1171)
.|+++||++.|+++ ..+|+||||+|++||.|+|+||||||||||+++|.|+.+|++|+|.++|.++...+ .+.+|+
T Consensus 3 ~i~~~nl~k~yp~~-~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPGG-HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCCC-ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 48999999999754 47999999999999999999999999999999999999999999999999998887 445678
Q ss_pred heEEEcCCcccccc-cHHhhccCC------------CCCCHHH---HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCCh
Q 001055 863 ILGIIPQSPVLFSG-TVRFNLDPF------------SEHSDAD---LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSV 926 (1171)
Q Consensus 863 ~i~~v~Q~~~lf~~-tv~~nl~~~------------~~~~~~~---i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSg 926 (1171)
+||+++|++.|-+. ||.+|+..+ .-.+.++ ..++|++.+ +......+..+|||
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervg-----------i~~~A~qra~~LSG 150 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVG-----------ILDKAYQRASTLSG 150 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcC-----------cHHHHHHHhccCCc
Confidence 89999999998865 999998421 2233333 344444444 44444556678999
Q ss_pred hHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEec
Q 001055 927 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 927 Gqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
||+|||+|||||+++|+|+|-|||+++|||.+.+.+++.|++.. .|.|+|+.-|+++.+.+ ||||+-|++|+|+.+|
T Consensus 151 GQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg 230 (258)
T COG3638 151 GQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDG 230 (258)
T ss_pred chhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeC
Confidence 99999999999999999999999999999999999999999876 47999999999999988 9999999999999999
Q ss_pred ChhHHh
Q 001055 1004 TPEELL 1009 (1171)
Q Consensus 1004 ~~~el~ 1009 (1171)
++.|+-
T Consensus 231 ~~~el~ 236 (258)
T COG3638 231 PASELT 236 (258)
T ss_pred Chhhhh
Confidence 999864
No 129
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.6e-43 Score=369.25 Aligned_cols=197 Identities=27% Similarity=0.372 Sum_probs=169.2
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.+++++|++.|+. ..+|+|+||+|++||.|+|+||||||||||+++|+|+.+|++|+|.++|.++... ...++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~ 75 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIG 75 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEE
Confidence 3899999999986 3799999999999999999999999999999999999999999999999988443 35799
Q ss_pred EEcCCcccccc-cHHhhccCCCCC---C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFSEH---S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 937 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~~~---~----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 937 (1171)
||+|++.||.- ||++|+.+.-+. . .+.+.+.++.+|+. ...+..+.+||||||||++||||
T Consensus 76 ~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~-----------~~~~~~P~qLSGGMrQRVaiARA 144 (248)
T COG1116 76 YVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLA-----------GFEDKYPHQLSGGMRQRVAIARA 144 (248)
T ss_pred EEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCc-----------chhhcCccccChHHHHHHHHHHH
Confidence 99999999987 999999754321 1 22344445554444 44455557899999999999999
Q ss_pred hccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeC--cEEE
Q 001055 938 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDS--GRVL 1000 (1171)
Q Consensus 938 ll~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~--G~i~ 1000 (1171)
|+.+|+|||||||.++||+.|+..+++.|.++.+ ++||++||||.+++-. +|||+||.+ |+|.
T Consensus 145 L~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 145 LATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred HhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 9999999999999999999999999999988653 5999999999999877 999999998 5554
No 130
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-42 Score=378.88 Aligned_cols=224 Identities=43% Similarity=0.717 Sum_probs=205.2
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++|++++|++. .++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 79 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGV 79 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4689999999643 369999999999999999999999999999999999999999999999999988887788889999
Q ss_pred EcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 001055 867 IPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 945 (1171)
Q Consensus 867 v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iL 945 (1171)
+||++.+|+.|+++|+.+.. ...+.++.+.++..++.+.+..+|.++++.+.....+||||||||++|||||+++|++|
T Consensus 80 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 80 VPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred ECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999997643 23455677778888899999999999999999889999999999999999999999999
Q ss_pred EEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhc
Q 001055 946 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 946 lLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
||||||++||+.+...+.+.|.+..++.|+|++||+++.+..||++++|++|++++.|+++++...
T Consensus 160 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~ 225 (236)
T cd03253 160 LLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK 225 (236)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence 999999999999999999999987668899999999999988999999999999999999888764
No 131
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-43 Score=353.76 Aligned_cols=217 Identities=26% Similarity=0.454 Sum_probs=188.1
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
+++.+++++|++. ..+++||||+++.||++||+|||||||||+|++|.+++.|++|.|.+||.|..+ .|...|++||+
T Consensus 2 l~v~~l~K~y~~~-v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IGV 79 (245)
T COG4555 2 LEVTDLTKSYGSK-VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIGV 79 (245)
T ss_pred eeeeehhhhccCH-HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcce
Confidence 7889999999863 358999999999999999999999999999999999999999999999999977 56789999999
Q ss_pred EcCCcccccc-cHHhhccCCCCC---CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 867 IPQSPVLFSG-TVRFNLDPFSEH---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~~~---~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
++-+..++.. |++|||.+|+.. .+.++. +...+...+ .++....+.+...||-|+||||+|||||+++|
T Consensus 80 l~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~k-----ari~~l~k~--l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P 152 (245)
T COG4555 80 LFGERGLYARLTARENLKYFARLNGLSRKEIK-----ARIAELSKR--LQLLEYLDRRVGEFSTGMKQKVAIARALVHDP 152 (245)
T ss_pred ecCCcChhhhhhHHHHHHHHHHHhhhhhhHHH-----HHHHHHHHH--hChHHHHHHHHhhhchhhHHHHHHHHHHhcCC
Confidence 9988778754 999999876532 223222 223333333 35566666677789999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcC
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~ 1012 (1171)
++++|||||||||..+.+.+++.+++... +++||+.||.|++++. ||||+++++|+++..|+++++.++.
T Consensus 153 ~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r~ 224 (245)
T COG4555 153 SILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDART 224 (245)
T ss_pred CeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHHH
Confidence 99999999999999999999999999875 8999999999999997 9999999999999999999997643
No 132
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=2.8e-42 Score=375.47 Aligned_cols=218 Identities=37% Similarity=0.596 Sum_probs=197.3
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++|++++|+....++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 48999999999653246999999999999999999999999999999999999999999999999988777777788999
Q ss_pred EEcCCcccccccHHhhccCCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001055 866 IIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 944 (1171)
Q Consensus 866 ~v~Q~~~lf~~tv~~nl~~~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 944 (1171)
|+||++.+|..|+.+|+.+... ....++.+.++..++.+.+..+|.|+++.......+||||||||++||||++.+|++
T Consensus 82 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~l 161 (220)
T cd03245 82 YVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPI 161 (220)
T ss_pred EeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999888899999975432 244567778888899999999999999988888889999999999999999999999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEec
Q 001055 945 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 945 LlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g 1003 (1171)
|||||||++||+.+...+++.|+++..++|||++||+++.+..||++++|++|++++.|
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 162 LLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 99999999999999999999999986668999999999988669999999999998754
No 133
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=3.6e-42 Score=379.22 Aligned_cols=225 Identities=41% Similarity=0.660 Sum_probs=203.0
Q ss_pred EEEEeeEEEeCCC-CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 787 IKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 787 i~~~~vs~~y~~~-~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
++++|++++|++. ..++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4689999999642 236999999999999999999999999999999999999999999999999988777777778899
Q ss_pred EEcCCcccccccHHhhccCCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001055 866 IIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 944 (1171)
Q Consensus 866 ~v~Q~~~lf~~tv~~nl~~~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 944 (1171)
|+||++.+|..|+++|+.+... ....++.+.++..++.+++..+|.++++..+....+||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999988899999976432 234556667777788999999999999988888899999999999999999999999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhc
Q 001055 945 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 945 LlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
|||||||++||+.+.+.+++.|+++.+++|+|++||+++++..||++++|++|++++.|+++++...
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc
Confidence 9999999999999999999999987667899999999999988999999999999999999888754
No 134
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=9.6e-44 Score=355.98 Aligned_cols=223 Identities=28% Similarity=0.453 Sum_probs=192.1
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH-hhhe
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKIL 864 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i 864 (1171)
.+.++|+.++|+.. +++++|||+|++||+||++|||||||||.+.++.|+.+|++|+|.+||.||+.++.+.. |..|
T Consensus 4 ~L~a~~l~K~y~kr--~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGi 81 (243)
T COG1137 4 TLVAENLAKSYKKR--KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGI 81 (243)
T ss_pred EEEehhhhHhhCCe--eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCc
Confidence 48899999999764 79999999999999999999999999999999999999999999999999999998764 5569
Q ss_pred EEEcCCcccccc-cHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001055 865 GIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 943 (1171)
Q Consensus 865 ~~v~Q~~~lf~~-tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~ 943 (1171)
||+||++.+|.. ||++||...-+..........++..+.+.++. +.+....+..+.+||||||+|+.|||||..+|+
T Consensus 82 gYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~e--f~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~ 159 (243)
T COG1137 82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEE--FHITHLRDSKAYSLSGGERRRVEIARALAANPK 159 (243)
T ss_pred ccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHH--hchHHHhcCcccccccchHHHHHHHHHHhcCCC
Confidence 999999999976 99999964322222122223333445555555 366677788889999999999999999999999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhh-hhcCEEEEEeCcEEEEecChhHHhhcC
Q 001055 944 ILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTI-IDCDRILLLDSGRVLEYDTPEELLSNE 1012 (1171)
Q Consensus 944 iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~-~~~d~i~vl~~G~i~~~g~~~el~~~~ 1012 (1171)
++|||||++|+||-+...|++.++.+. .|-.|+++-|+..+. .-|||.+++.+|+|..+|+|+|+.+++
T Consensus 160 fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 160 FILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred EEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 999999999999999999999998876 478899999997664 559999999999999999999999765
No 135
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3e-42 Score=363.89 Aligned_cols=204 Identities=30% Similarity=0.427 Sum_probs=171.7
Q ss_pred EEEEeeEEEeCCCC--CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---H-
Q 001055 787 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---L- 860 (1171)
Q Consensus 787 i~~~~vs~~y~~~~--~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~- 860 (1171)
++++||++.|.... .++|+++||+|++||.++|+||||||||||+++|.|+.+|++|.|.++|.|+..++... +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67899999996432 36899999999999999999999999999999999999999999999999999887544 3
Q ss_pred hhheEEEcCCcccccc-cHHhhccC---CCCCCH----HHHHHHHHHhcHHHHHHHccCCcchhhh-cCCCCCChhHHHH
Q 001055 861 RKILGIIPQSPVLFSG-TVRFNLDP---FSEHSD----ADLWEALERAHLKDAIRRNSLGLDAQVS-EAGENFSVGQRQL 931 (1171)
Q Consensus 861 r~~i~~v~Q~~~lf~~-tv~~nl~~---~~~~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~-~~~~~LSgGqkqr 931 (1171)
|++||||+|+..|.+. |++||+.. +..... ....+.++.. |+..... ..+.+||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~l-----------gl~~~~~~~~p~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVL-----------GLEDRLLKKKPSELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhc-----------CChhhhccCCchhcCHHHHHH
Confidence 4569999999998866 99999973 222221 1222233332 4443333 5567899999999
Q ss_pred HHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhhcCEEEEEeCcEEEE
Q 001055 932 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLE 1001 (1171)
Q Consensus 932 l~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~ 1001 (1171)
|||||||+.+|+|++.||||.+||.++.+.+++.+++..+ ++|+|+||||...+..|||++.|.||++..
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 9999999999999999999999999999999999999853 689999999999999999999999999543
No 136
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-42 Score=380.54 Aligned_cols=216 Identities=29% Similarity=0.457 Sum_probs=182.1
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCCh---HHHhhh
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL---MDLRKI 863 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~---~~~r~~ 863 (1171)
++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 78 (235)
T cd03261 1 IELRGLTKSFGGR--TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRR 78 (235)
T ss_pred CeEEEEEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcc
Confidence 4689999999643 69999999999999999999999999999999999999999999999999887664 456788
Q ss_pred eEEEcCCcccccc-cHHhhccCCC----CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 864 LGIIPQSPVLFSG-TVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 864 i~~v~Q~~~lf~~-tv~~nl~~~~----~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
|+|+||++.+|.. |+++|+.+.. .....+..+ .+.+.++.+ |+....+....+|||||||||+|||||
T Consensus 79 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~ia~al 151 (235)
T cd03261 79 MGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIRE-----IVLEKLEAV--GLRGAEDLYPAELSGGMKKRVALARAL 151 (235)
T ss_pred eEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 9999999998876 9999996431 112222111 122333332 444445556678999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
+.+|+||||||||++||+.++..+++.|++..+ ++|||+|||+++++.. ||+|++|++|++++.|+++++...
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 152 ALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 999999999999999999999999999998753 7899999999999877 999999999999999999998753
No 137
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-42 Score=395.24 Aligned_cols=265 Identities=19% Similarity=0.291 Sum_probs=212.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCcEEEEeeEEEcCCCCC
Q 001055 98 GDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAE 177 (1171)
Q Consensus 98 ~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 177 (1171)
+.++++.+|+.+++++.+..++..+|..... ..|+..|+..++......+...+....|+++|++++|+. ..
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nls~~y~~-~~ 94 (329)
T PRK14257 23 NELDAKAIYDEFQKLNKYQRAFAWLKLPKQK-------KAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMN-RT 94 (329)
T ss_pred chhHHHHHHHHhhccccccchhhHHhccccc-------chhhhhcccccccccccccCCCCcCceEEEEeeEEEecC-CC
Confidence 5678999999999999998888877654332 568888877644211000111123347999999999974 24
Q ss_pred CCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCC-----CCCCccc--------------eecCcEEEEecCCCC
Q 001055 178 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-----PVSDASA--------------VIRGTVAYVPQVSWI 238 (1171)
Q Consensus 178 ~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~-----~~~g~~~--------------~~~~~i~~v~Q~~~l 238 (1171)
+++|+|+||+|++||++||+|+||||||||+++|+|+.+ |++|.+. .+++.++||||+|++
T Consensus 95 ~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~ 174 (329)
T PRK14257 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTP 174 (329)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 579999999999999999999999999999999999986 4566532 235679999999999
Q ss_pred CcccHHHHHhcCCC---CC-HH----HHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEE
Q 001055 239 FNATVRDNILFGSA---FE-PA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 310 (1171)
Q Consensus 239 ~~~Tv~eni~~g~~---~~-~~----~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vl 310 (1171)
|++||+|||.|+.. .. .+ .+..+++.+++.++++ +.+++++.+|||||||||+|||||+++|+||
T Consensus 175 ~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~-------~~~~~~~~~LSgGqkqRl~LARAl~~~p~Il 247 (329)
T PRK14257 175 FEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVK-------DDLDKAGNALSGGQQQRLCIARAIALEPEVL 247 (329)
T ss_pred CCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhh-------hhhhCCcccCCHHHHHHHHHHHHHHhCCCEE
Confidence 99999999998642 11 22 2455667777654432 4578889999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhcc
Q 001055 311 IFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNG 378 (1171)
Q Consensus 311 lLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 378 (1171)
||||||++||+.+.+++.+.+.... +++|+|+|||+++++.. ||||++|++|++++.|+++++..++
T Consensus 248 LLDEPts~LD~~~~~~i~~~i~~l~-~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~~ 315 (329)
T PRK14257 248 LMDEPTSALDPIATAKIEELILELK-KKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHP 315 (329)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCC
Confidence 9999999999999999888665443 47999999999999887 8999999999999999999987653
No 138
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=100.00 E-value=9.7e-42 Score=377.08 Aligned_cols=183 Identities=24% Similarity=0.359 Sum_probs=139.4
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++..+++++|++- .|.-=.=+|..||++|++||||-||||++++|+|.++|++|. ..+ -+|+|
T Consensus 343 v~y~~~~k~~g~F---~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vSy 405 (591)
T COG1245 343 VEYPDLKKTYGDF---KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVSY 405 (591)
T ss_pred eecchheeecCce---EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEee
Confidence 4445555555421 222222245678999999999999999999999999999998 111 25889
Q ss_pred EcCCcc-cccccHHhhccCCCC--CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001055 867 IPQSPV-LFSGTVRFNLDPFSE--HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 943 (1171)
Q Consensus 867 v~Q~~~-lf~~tv~~nl~~~~~--~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~ 943 (1171)
=||-.. -|++||++-|.-... ..+.-. ...+. .|..++....+....|||||.|||+||-+|.++++
T Consensus 406 KPQyI~~~~~gtV~~~l~~~~~~~~~~s~~---------~~ei~-~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reAD 475 (591)
T COG1245 406 KPQYISPDYDGTVEDLLRSAIRSAFGSSYF---------KTEIV-KPLNLEDLLERPVDELSGGELQRVAIAAALSREAD 475 (591)
T ss_pred cceeecCCCCCcHHHHHHHhhhhhcccchh---------HHhhc-CccchHHHHhcccccCCchhHHHHHHHHHhccccC
Confidence 999753 478899886632111 111001 11111 26777788888888999999999999999999999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeC
Q 001055 944 ILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDS 996 (1171)
Q Consensus 944 iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~ 996 (1171)
++|||||++.||.+.+-.+-+.|++... ++|.++|-||+..+.. +||++|++.
T Consensus 476 lYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 476 LYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred EEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 9999999999999999999999998664 6899999999999998 999999863
No 139
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=4.1e-42 Score=338.89 Aligned_cols=209 Identities=29% Similarity=0.423 Sum_probs=187.4
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
+.+++|.++|+.. =-.++++|++||+|||+||||||||||+++|+|+..|.+|+|.|+|+|....+| .++-+++
T Consensus 2 l~L~~V~~~y~~~----~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P--~~RPVSm 75 (231)
T COG3840 2 LALDDVRFSYGHL----PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP--AERPVSM 75 (231)
T ss_pred ccccceEEeeCcc----eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCc--ccCChhh
Confidence 5688999999642 246889999999999999999999999999999999999999999999987766 4567999
Q ss_pred EcCCcccccc-cHHhhccCCC----CC---CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 867 IPQSPVLFSG-TVRFNLDPFS----EH---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~----~~---~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
++|+..||.. ||++|+.++- +. ..+.+..++.++|+..+..++| .+||||||||++|||+|
T Consensus 76 lFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----------~~LSGGqRQRvALARcl 144 (231)
T COG3840 76 LFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----------GELSGGQRQRVALARCL 144 (231)
T ss_pred hhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-----------cccCchHHHHHHHHHHH
Confidence 9999999976 9999997542 11 3456888999999999999998 47999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcC
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~ 1012 (1171)
+++-+||+||||+|+|||.-+..+...+.++. ++.|+++|||.++.+.. +||++++++|+|.+.|..+++.+..
T Consensus 145 vR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 145 VREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK 221 (231)
T ss_pred hccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence 99999999999999999999999999998876 36899999999999988 9999999999999999999998654
No 140
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.1e-43 Score=371.73 Aligned_cols=217 Identities=28% Similarity=0.430 Sum_probs=185.2
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCE---ecCCCChHHHhh
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF---DIAKFGLMDLRK 862 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~---~i~~~~~~~~r~ 862 (1171)
.|+++|+++.|+.. ++++|||++|+.||.+|+.|||||||||||++|+|+..|++|+|.++|. |.++. ..-.+
T Consensus 2 ~i~i~~~~~~~~~~--~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~--~~~~R 77 (345)
T COG1118 2 SIRINNVKKRFGAF--GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL--AVRDR 77 (345)
T ss_pred ceeehhhhhhcccc--cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhcc--chhhc
Confidence 37889999999754 6999999999999999999999999999999999999999999999999 66553 33446
Q ss_pred heEEEcCCcccccc-cHHhhccCCCCC-----C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001055 863 ILGIIPQSPVLFSG-TVRFNLDPFSEH-----S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 932 (1171)
Q Consensus 863 ~i~~v~Q~~~lf~~-tv~~nl~~~~~~-----~----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl 932 (1171)
+||+|+|+..+|.. ||++|+.|.-+. + +.++.+.|+.+++..+- +..+.+||||||||+
T Consensus 78 ~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la-----------~ryP~QLSGGQrQRV 146 (345)
T COG1118 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLA-----------DRYPAQLSGGQRQRV 146 (345)
T ss_pred ceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchh-----------hcCchhcChHHHHHH
Confidence 79999999999965 999999875421 1 23344445554444443 444578999999999
Q ss_pred HHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 933 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 933 ~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
||||||.-+|++||||||.++||+.-+..+.+-|+++.. +.|+++||||.+++.. ||||++|++|+|...|+|+|+.
T Consensus 147 ALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 147 ALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred HHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 999999999999999999999999999999999998764 7999999999999877 9999999999999999999998
Q ss_pred hcCCChHH
Q 001055 1010 SNEGSSFS 1017 (1171)
Q Consensus 1010 ~~~~~~~~ 1017 (1171)
..+.+.|-
T Consensus 227 ~~P~s~fV 234 (345)
T COG1118 227 DHPASRFV 234 (345)
T ss_pred cCCCccce
Confidence 87765553
No 141
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.1e-43 Score=372.58 Aligned_cols=206 Identities=27% Similarity=0.441 Sum_probs=178.9
Q ss_pred cEEEEeeEEEcCCCC--CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------
Q 001055 162 AISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 224 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~--~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------- 224 (1171)
+|+++++|+.|.... ..++|+||||+|++||+.||+|.||+|||||++++.++..|++|.+..
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 489999999998531 246999999999999999999999999999999999999999987643
Q ss_pred ecCcEEEEecCCCCC-cccHHHHHhcCCC---C-C---HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHH
Q 001055 225 IRGTVAYVPQVSWIF-NATVRDNILFGSA---F-E---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 296 (1171)
Q Consensus 225 ~~~~i~~v~Q~~~l~-~~Tv~eni~~g~~---~-~---~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqR 296 (1171)
.|..||+++|++.|+ +.||++||.|... . + ..++.+.++..+|.+..+..| .+||||||||
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQR 149 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQR 149 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhH
Confidence 345799999999997 5899999998632 1 1 234556677788887766666 4899999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHH
Q 001055 297 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 374 (1171)
Q Consensus 297 v~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 374 (1171)
|+|||||+.+|+|||.|||||+|||++.+.|.+.|.+..++ |-|+++|||.++.++. |||+.+|++|+++++|+..++
T Consensus 150 VaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 150 VAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 99999999999999999999999999999999987776544 9999999999999986 899999999999999999998
Q ss_pred hhcc
Q 001055 375 SNNG 378 (1171)
Q Consensus 375 ~~~~ 378 (1171)
..++
T Consensus 230 F~~P 233 (339)
T COG1135 230 FANP 233 (339)
T ss_pred hcCc
Confidence 7763
No 142
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=7.5e-42 Score=368.45 Aligned_cols=207 Identities=61% Similarity=0.992 Sum_probs=182.7
Q ss_pred CCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH
Q 001055 781 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL 860 (1171)
Q Consensus 781 ~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~ 860 (1171)
||..+.++++|++++|+....++++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+
T Consensus 1 ~~~~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 80 (207)
T cd03369 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred CCCCCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHH
Confidence 55667799999999997533369999999999999999999999999999999999999999999999999988777778
Q ss_pred hhheEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 861 RKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 861 r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
|+.|+|+||++.+|++|+++|+.++.....+++.++++ ++.....|||||+||++||||++.
T Consensus 81 ~~~i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~ 142 (207)
T cd03369 81 RSSLTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLK 142 (207)
T ss_pred HhhEEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhh
Confidence 88999999999999899999997654333333332222 234567899999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecCh
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTP 1005 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~ 1005 (1171)
+|++|||||||++||+.+...+++.|++..+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 143 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 143 RPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999998678999999999999878999999999999988864
No 143
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=3.2e-42 Score=391.47 Aligned_cols=216 Identities=28% Similarity=0.442 Sum_probs=184.6
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|++||
T Consensus 7 ~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ig 83 (306)
T PRK13537 7 PIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRVG 83 (306)
T ss_pred eEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcEE
Confidence 5999999999975 36999999999999999999999999999999999999999999999999997644 45788999
Q ss_pred EEcCCccccc-ccHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001055 866 IIPQSPVLFS-GTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 866 ~v~Q~~~lf~-~tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 941 (1171)
|+||++.+|. .|+++|+.++.. ....+..+ .+.++++. .++....+....+||||||||++|||||+++
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~--~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~ 156 (306)
T PRK13537 84 VVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARA-----LVPPLLEF--AKLENKADAKVGELSGGMKRRLTLARALVND 156 (306)
T ss_pred EEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHH--cCCchHhcCchhhCCHHHHHHHHHHHHHhCC
Confidence 9999999886 599999975332 12222211 12333443 2454555566678999999999999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
|++|||||||+|||+.+++.+++.|+++.+ ++|||++||+++++.. ||||++|++|++++.|+++++.+.
T Consensus 157 P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 157 PDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999999999999754 7899999999999987 999999999999999999999764
No 144
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-42 Score=395.08 Aligned_cols=215 Identities=21% Similarity=0.374 Sum_probs=184.4
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++|++++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...++. ++.|||
T Consensus 4 l~i~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~ 80 (356)
T PRK11650 4 LKLQAVRKSYDGK-TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIAM 80 (356)
T ss_pred EEEEeEEEEeCCC-CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEE
Confidence 8999999999422 3699999999999999999999999999999999999999999999999999877654 478999
Q ss_pred EcCCcccccc-cHHhhccCCCC---CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 867 IPQSPVLFSG-TVRFNLDPFSE---HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~~---~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
|||++.+|.. ||++|+.+... ... +++.++++..++. ...+....+|||||||||+|||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~-----------~~~~~~~~~LSgGq~QRvalARAL 149 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELE-----------PLLDRKPRELSGGQRQRVAMGRAI 149 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh-----------hHhhCChhhCCHHHHHHHHHHHHH
Confidence 9999999964 99999975321 122 2334444544444 444455578999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCCh
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSS 1015 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~ 1015 (1171)
+.+|++|||||||++||+.++..+.+.|+++.+ +.|+|+||||++++.. ||+|++|++|++++.|+++++..++...
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~~~ 229 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPAST 229 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCccH
Confidence 999999999999999999999999999998754 7899999999999876 9999999999999999999998765433
No 145
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.8e-42 Score=366.54 Aligned_cols=204 Identities=30% Similarity=0.507 Sum_probs=176.9
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceec---------CcEEE
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR---------GTVAY 231 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~---------~~i~~ 231 (1171)
+.|+++|++++|.+ . ++|+||||++++|++++|+||||||||||+|+|+|+++|++|.+.... .+|||
T Consensus 3 ~~i~v~nl~v~y~~--~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgY 79 (254)
T COG1121 3 PMIEVENLTVSYGN--R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGY 79 (254)
T ss_pred cEEEEeeeEEEECC--E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEE
Confidence 46999999999974 2 599999999999999999999999999999999999999999876422 36999
Q ss_pred EecCC---CCCcccHHHHHhcCCCC-----------CHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHH
Q 001055 232 VPQVS---WIFNATVRDNILFGSAF-----------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 297 (1171)
Q Consensus 232 v~Q~~---~l~~~Tv~eni~~g~~~-----------~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv 297 (1171)
|||.. |-|+.||+|-+.+|... +.+.+.++++..++.+..+. ...+|||||+|||
T Consensus 80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-----------~i~~LSGGQ~QRV 148 (254)
T COG1121 80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-----------QIGELSGGQKQRV 148 (254)
T ss_pred cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-----------cccccCcHHHHHH
Confidence 99964 55889999999988432 23677888999998876553 2358999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhh
Q 001055 298 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 298 ~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
.|||||+++|++|+|||||+|+|+.++..+++.+.+.+.+|+||++||||++.+. .+|+|+.| ++++.+.|+++++.+
T Consensus 149 ~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~~ 227 (254)
T COG1121 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVLT 227 (254)
T ss_pred HHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhccC
Confidence 9999999999999999999999999999999988777777999999999999876 58999999 567899999999876
Q ss_pred cch
Q 001055 377 NGE 379 (1171)
Q Consensus 377 ~~~ 379 (1171)
...
T Consensus 228 ~~~ 230 (254)
T COG1121 228 EEN 230 (254)
T ss_pred HHH
Confidence 543
No 146
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-41 Score=388.69 Aligned_cols=219 Identities=21% Similarity=0.383 Sum_probs=186.3
Q ss_pred cEEEEeeEEEeCCCC---CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCC-------
Q 001055 786 SIKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF------- 855 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~---~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~------- 855 (1171)
.|+++||+|+|++.. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 599999999996421 3599999999999999999999999999999999999999999999999998653
Q ss_pred ---------ChHHHhhheEEEcCCc--ccccccHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcC
Q 001055 856 ---------GLMDLRKILGIIPQSP--VLFSGTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLD-AQVSEA 920 (1171)
Q Consensus 856 ---------~~~~~r~~i~~v~Q~~--~lf~~tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~ 920 (1171)
....+|+.|+||||+| .+|..|+++|+.+... .+.++.. + .+.++++.+ |++ ...++.
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~---~--~~~~~l~~~--gL~~~~~~~~ 173 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAK---K--LAKFYLNKM--GLDDSYLERS 173 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHH---H--HHHHHHHHc--CCChhHhcCC
Confidence 3456788999999998 6888899999965321 2222221 1 233555554 564 456778
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcE
Q 001055 921 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGR 998 (1171)
Q Consensus 921 ~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~ 998 (1171)
+.+||||||||++|||||+.+|+||||||||++||+.+++.+.+.|+++. +++|||+||||++++.. ||||++|++|+
T Consensus 174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~ 253 (320)
T PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGK 253 (320)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCE
Confidence 88999999999999999999999999999999999999999999998864 47899999999998865 99999999999
Q ss_pred EEEecChhHHhhc
Q 001055 999 VLEYDTPEELLSN 1011 (1171)
Q Consensus 999 i~~~g~~~el~~~ 1011 (1171)
+++.|+++++...
T Consensus 254 i~~~g~~~~~~~~ 266 (320)
T PRK13631 254 ILKTGTPYEIFTD 266 (320)
T ss_pred EEEeCCHHHHhcC
Confidence 9999999998754
No 147
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=4.2e-42 Score=375.89 Aligned_cols=209 Identities=32% Similarity=0.512 Sum_probs=177.7
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-----CCCCceEEECCEecCCCC--hHH
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV-----ELERGRILIDGFDIAKFG--LMD 859 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~-----~p~~G~I~i~g~~i~~~~--~~~ 859 (1171)
|+++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|++ +|++|+|.++|.++...+ ...
T Consensus 1 i~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 78 (227)
T cd03260 1 IELRDLNVYYGDK--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLE 78 (227)
T ss_pred CEEEEEEEEcCCc--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHH
Confidence 4789999999753 6999999999999999999999999999999999999 999999999999987766 456
Q ss_pred HhhheEEEcCCcccccccHHhhccCCCC---C-C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcC--CCCCChhHH
Q 001055 860 LRKILGIIPQSPVLFSGTVRFNLDPFSE---H-S----DADLWEALERAHLKDAIRRNSLGLDAQVSEA--GENFSVGQR 929 (1171)
Q Consensus 860 ~r~~i~~v~Q~~~lf~~tv~~nl~~~~~---~-~----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~--~~~LSgGqk 929 (1171)
++++++|+||++.+|..|+++|+.+... . . ++++.++++.. |+....... +.+||||||
T Consensus 79 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~~LSgG~~ 147 (227)
T cd03260 79 LRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKA-----------ALWDEVKDRLHALGLSGGQQ 147 (227)
T ss_pred HHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHc-----------CCChHHhccCCcccCCHHHH
Confidence 7888999999999887799999965311 1 1 12233333333 343333333 478999999
Q ss_pred HHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHH
Q 001055 930 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1008 (1171)
Q Consensus 930 qrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 1008 (1171)
||++|||||+.+|++|||||||++||+.+++.+.+.|++..+.+|||++||+++.+.. ||++++|++|++++.|+++++
T Consensus 148 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 148 QRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 9999999999999999999999999999999999999998655899999999999876 999999999999999988763
No 148
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-41 Score=373.53 Aligned_cols=218 Identities=28% Similarity=0.459 Sum_probs=185.7
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...++..+|+.++
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 80 (241)
T PRK14250 3 EIEFKEVSYSSFGK--EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIG 80 (241)
T ss_pred eEEEEeEEEEeCCe--eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEE
Confidence 38999999999643 6999999999999999999999999999999999999999999999999998777777888999
Q ss_pred EEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001055 866 IIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLSLSRALLRRSKI 944 (1171)
Q Consensus 866 ~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~LSgGqkqrl~lArall~~p~i 944 (1171)
|+||++.+|..|+++|+.+........ ...+.++++.+ |++ ...+....+||||||||++|||||+++|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~------~~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~l 152 (241)
T PRK14250 81 MVFQQPHLFEGTVKDNIEYGPMLKGEK------NVDVEYYLSIV--GLNKEYATRDVKNLSGGEAQRVSIARTLANNPEV 152 (241)
T ss_pred EEecCchhchhhHHHHHhcchhhcCcH------HHHHHHHHHHc--CCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999889999987532111100 01123334332 443 244566778999999999999999999999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCC
Q 001055 945 LVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 1013 (1171)
Q Consensus 945 LlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~ 1013 (1171)
|||||||++||+.+.+.+.+.|++..+ ++|||++||+++.+.. ||+|++|++|++++.|+++++...+.
T Consensus 153 lllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 224 (241)
T PRK14250 153 LLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQ 224 (241)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCC
Confidence 999999999999999999999998753 7899999999999877 99999999999999999999876543
No 149
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.4e-42 Score=393.55 Aligned_cols=216 Identities=25% Similarity=0.414 Sum_probs=185.9
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.|+++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++ .+++||
T Consensus 6 ~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 81 (351)
T PRK11432 6 FVVLKNITKRFGSN--TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDIC 81 (351)
T ss_pred EEEEEeEEEEECCe--EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEE
Confidence 49999999999753 69999999999999999999999999999999999999999999999999987664 357899
Q ss_pred EEcCCcccccc-cHHhhccCCCC---CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFSE---HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 937 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~~---~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 937 (1171)
||||++.+|.. ||++|+.+... ... +++.++++..++ ....+.....|||||||||+||||
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl-----------~~~~~r~~~~LSgGq~QRVaLARa 150 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDL-----------AGFEDRYVDQISGGQQQRVALARA 150 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCC-----------chhhcCChhhCCHHHHHHHHHHHH
Confidence 99999999965 99999975321 122 233444444444 344455567899999999999999
Q ss_pred hccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCC
Q 001055 938 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 1014 (1171)
Q Consensus 938 ll~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~ 1014 (1171)
|+.+|++|||||||++||+.++..+.+.|+++.+ +.|+|+||||++++.. ||||++|++|+|++.|+++++..++..
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~~ 230 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPAS 230 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCc
Confidence 9999999999999999999999999999998754 7899999999999876 999999999999999999999876654
Q ss_pred hH
Q 001055 1015 SF 1016 (1171)
Q Consensus 1015 ~~ 1016 (1171)
.|
T Consensus 231 ~~ 232 (351)
T PRK11432 231 RF 232 (351)
T ss_pred hH
Confidence 43
No 150
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=6.9e-42 Score=384.98 Aligned_cols=213 Identities=32% Similarity=0.571 Sum_probs=185.8
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++||+++|+.+ ..+|+||||+|++||++|++||||||||||+++|+|+++|++|+|.++|.++..- ....|++||
T Consensus 4 ~i~~~~l~k~~~~~-~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGGD-KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCCC-CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheE
Confidence 37899999999831 3799999999999999999999999999999999999999999999999998765 678899999
Q ss_pred EEcCCcccccc-cHHhhccCCCCC-------CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFSEH-------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 937 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~~~-------~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 937 (1171)
|+||+|.++.. |++|||.++... .++.+.+.++..++. ...+....+||+||||||+||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~-----------~~~~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLE-----------DKANKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCc-----------hhhCcchhhcCHHHHHHHHHHHH
Confidence 99999998866 999999865321 123455555554443 32244567899999999999999
Q ss_pred hccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-C-cEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 938 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-S-CTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 938 ll~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~-~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
|+++|++|||||||+||||.+...+++.|+++.. + +||+++||.+++++. ||+|++|++|+++..|+++++...
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999999875 4 699999999999998 999999999999999999998754
No 151
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=9.1e-42 Score=393.51 Aligned_cols=220 Identities=24% Similarity=0.397 Sum_probs=188.0
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++||+++|++. .+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...++. ++.||
T Consensus 4 ~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig 79 (353)
T TIGR03265 4 YLSIDNIRKRFGAF--TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYG 79 (353)
T ss_pred EEEEEEEEEEeCCe--EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 38999999999753 699999999999999999999999999999999999999999999999999876653 67899
Q ss_pred EEcCCccccc-ccHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001055 866 IIPQSPVLFS-GTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 866 ~v~Q~~~lf~-~tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 941 (1171)
||||++.+|. .||++|+.+... .+..+.. ..+.++++.+ |++...+..+.+|||||||||+|||||+.+
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~-----~~~~~~l~~l--~L~~~~~~~~~~LSgGq~QRvaLARaL~~~ 152 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVA-----ERVAELLDLV--GLPGSERKYPGQLSGGQQQRVALARALATS 152 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCCchhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999996 499999975321 1112111 2234444443 566666677789999999999999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCChH
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 1016 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~ 1016 (1171)
|++|||||||++||+.++..+++.|+++.+ +.|+|+||||++++.. ||+|++|++|++++.|+++++..++...|
T Consensus 153 P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~~~ 230 (353)
T TIGR03265 153 PGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPF 230 (353)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHH
Confidence 999999999999999999999999998754 7899999999999876 99999999999999999999987655443
No 152
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-41 Score=390.60 Aligned_cols=220 Identities=28% Similarity=0.463 Sum_probs=186.1
Q ss_pred EEEEeeEEEeCC--CCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---Hh
Q 001055 787 IKFEDVVLRYRP--ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LR 861 (1171)
Q Consensus 787 i~~~~vs~~y~~--~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~r 861 (1171)
|+++||+++|+. ...++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999972 1246999999999999999999999999999999999999999999999999998876554 47
Q ss_pred hheEEEcCCccccc-ccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001055 862 KILGIIPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 937 (1171)
Q Consensus 862 ~~i~~v~Q~~~lf~-~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 937 (1171)
++|||+||++.+|. .|+++|+.+.. .....+.. ..+.++++.+ |++...+....+||||||||++||||
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~-----~~~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAra 154 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIK-----ARVTELLELV--GLSDKADRYPAQLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 78999999999886 59999996431 12222211 1223344443 55555666677899999999999999
Q ss_pred hccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCC
Q 001055 938 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 1013 (1171)
Q Consensus 938 ll~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~ 1013 (1171)
|+.+|+||||||||++||+.+...+++.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...+.
T Consensus 155 L~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 233 (343)
T PRK11153 155 LASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPK 233 (343)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 9999999999999999999999999999998753 7899999999999887 99999999999999999999986543
No 153
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-41 Score=350.66 Aligned_cols=221 Identities=27% Similarity=0.432 Sum_probs=191.2
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH-hhhe
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKIL 864 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i 864 (1171)
.++++||+..|+.. ++|++|||++++||+++|+||||||||||+++|+|+.+|.+|+|.++|.||...+++.. |..|
T Consensus 3 mL~v~~l~~~YG~~--~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 3 MLEVENLSAGYGKI--QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred ceeEEeEeecccce--eEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 38999999999864 79999999999999999999999999999999999999999999999999999999875 6679
Q ss_pred EEEcCCcccccc-cHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001055 865 GIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 943 (1171)
Q Consensus 865 ~~v~Q~~~lf~~-tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~ 943 (1171)
+||||...+|.. ||+|||.......+. +.-....+++..+-+| .+....+..+.+|||||||.|+|||||+.+|+
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~---~~~~~~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~Pk 156 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRD---KEAQERDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSRPK 156 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhcccc---cccccccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcCCC
Confidence 999999999965 999999753221110 0001111334445566 46677788889999999999999999999999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcC
Q 001055 944 ILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012 (1171)
Q Consensus 944 iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~ 1012 (1171)
+|+|||||.||-|.-.+.|.+.|+++.+ +.||++|-++...+.. +||.+||++|+|+..|+.+||.+++
T Consensus 157 lLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~ 228 (237)
T COG0410 157 LLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228 (237)
T ss_pred EEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCH
Confidence 9999999999999999999999999884 4699999999999876 9999999999999999999998753
No 154
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-41 Score=373.22 Aligned_cols=217 Identities=24% Similarity=0.421 Sum_probs=185.8
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCceEEECCEecCCCChHHHhhh
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE---LERGRILIDGFDIAKFGLMDLRKI 863 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~---p~~G~I~i~g~~i~~~~~~~~r~~ 863 (1171)
|+++|+++.|++ +++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++...+...+|+.
T Consensus 3 ~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 80 (246)
T PRK14269 3 AKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80 (246)
T ss_pred eeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence 789999999975 369999999999999999999999999999999999984 689999999999988777778889
Q ss_pred eEEEcCCcccccccHHhhccCCCC---C------CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001055 864 LGIIPQSPVLFSGTVRFNLDPFSE---H------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 934 (1171)
Q Consensus 864 i~~v~Q~~~lf~~tv~~nl~~~~~---~------~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~l 934 (1171)
++|+||++.+|..|+++|+.+... . .++++.+.++..++.+++. ...++.+.+||||||||++|
T Consensus 81 i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~qrv~l 153 (246)
T PRK14269 81 VGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK-------DKLKQNALALSGGQQQRLCI 153 (246)
T ss_pred EEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhh-------HHhcCCcccCCHHHHHHHHH
Confidence 999999999998999999965321 0 0112334444444432222 23455677899999999999
Q ss_pred HHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcC
Q 001055 935 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012 (1171)
Q Consensus 935 Arall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~ 1012 (1171)
||||+++|++|||||||++||+.+...+.+.|.+..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++....
T Consensus 154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 232 (246)
T PRK14269 154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENP 232 (246)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhCC
Confidence 99999999999999999999999999999999998778999999999999876 9999999999999999999987543
No 155
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-41 Score=379.67 Aligned_cols=212 Identities=26% Similarity=0.389 Sum_probs=181.6
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++||+++|++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.||
T Consensus 4 ~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 38999999999633 36999999999999999999999999999999999999999999999999998877778888999
Q ss_pred EEcCCc--ccccccHHhhccCCCC---CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001055 866 IIPQSP--VLFSGTVRFNLDPFSE---HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 936 (1171)
Q Consensus 866 ~v~Q~~--~lf~~tv~~nl~~~~~---~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 936 (1171)
|+||+| .++..|+.+|+.+... ... +++.++++..++ ....+....+||||||||++|||
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L-----------~~~~~~~~~~LSgG~~qrv~lar 151 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRM-----------WDFRDKPPYHLSYGQKKRVAIAG 151 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCC-----------HHHhcCChhhCCHHHHHHHHHHH
Confidence 999998 5777899999975321 121 223344444444 33444455689999999999999
Q ss_pred HhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 937 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 937 all~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
||+.+|++|||||||++||+.+...+++.|+++. .++|||++||+++.+.. ||||++|++|++++.|+++++.
T Consensus 152 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 9999999999999999999999999999999875 37899999999999866 9999999999999999987643
No 156
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-41 Score=380.40 Aligned_cols=215 Identities=28% Similarity=0.426 Sum_probs=184.5
Q ss_pred cEEEEeeEEEeCCC-CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhhe
Q 001055 786 SIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 864 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~-~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 864 (1171)
.++++||+++|++. .+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 38999999999642 23599999999999999999999999999999999999999999999999999887777888899
Q ss_pred EEEcCCcc--cccccHHhhccCCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001055 865 GIIPQSPV--LFSGTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 935 (1171)
Q Consensus 865 ~~v~Q~~~--lf~~tv~~nl~~~~---~~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 935 (1171)
+|+||+|. ++..||++|+.+.. ..+. +.+.++++..+ ++...+....+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~g-----------L~~~~~~~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVG-----------MQDFKEREPARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCC-----------CHhHhhCCcccCCHHHHHHHHHH
Confidence 99999983 55679999997532 1222 22344444444 44444555678999999999999
Q ss_pred HHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhc
Q 001055 936 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 936 rall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
|||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|||++||+++.+..||||++|++|++++.|+++++...
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999998753 7899999999999977999999999999999999988754
No 157
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-41 Score=380.33 Aligned_cols=218 Identities=29% Similarity=0.493 Sum_probs=183.2
Q ss_pred EEEEeeEEEeCCCC---CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCC--hHHHh
Q 001055 787 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG--LMDLR 861 (1171)
Q Consensus 787 i~~~~vs~~y~~~~---~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~--~~~~r 861 (1171)
|+++||+++|++.. +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 88999999996421 36999999999999999999999999999999999999999999999999997643 34678
Q ss_pred hheEEEcCCc--ccccccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcc--hhhhcCCCCCChhHHHHHHH
Q 001055 862 KILGIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD--AQVSEAGENFSVGQRQLLSL 934 (1171)
Q Consensus 862 ~~i~~v~Q~~--~lf~~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~--~~~~~~~~~LSgGqkqrl~l 934 (1171)
++||||||+| .+|..|+++|+.+.. ..++.+..+. +.+.++. .|+. +..+.....||||||||++|
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~--~gL~~~~~~~~~~~~LSgGq~qrv~i 155 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENR-----VKRAMNI--VGLDYEDYKDKSPFELSGGQKRRVAI 155 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHH-----HHHHHHH--cCCCchhhccCCcccCCHHHHHHHHH
Confidence 8999999998 567889999997532 1223222211 2233333 2443 44566778999999999999
Q ss_pred HHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 935 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 935 Arall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
||||+.+|++|||||||++||+.+...+++.|+++.+ +.|||+|||+++++.. ||||++|++|++++.|+++++.+.
T Consensus 156 AraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13637 156 AGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE 235 (287)
T ss_pred HHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999998753 7899999999999866 999999999999999999998753
No 158
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=2.3e-41 Score=372.36 Aligned_cols=220 Identities=28% Similarity=0.469 Sum_probs=184.7
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH-hhheE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKILG 865 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i~ 865 (1171)
++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... +..++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (236)
T cd03219 1 LEVRGLTKRFGGL--VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIG 78 (236)
T ss_pred CeeeeeEEEECCE--EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEE
Confidence 4689999999743 69999999999999999999999999999999999999999999999999987776554 56799
Q ss_pred EEcCCcccccc-cHHhhccCCCCCC-HHHH-------HHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFSEHS-DADL-------WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 936 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~~~~-~~~i-------~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 936 (1171)
|+||++.+|.. |+++|+.+..... ...+ ........+.++++.+ |++...+....+||||||||++|||
T Consensus 79 ~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~ 156 (236)
T cd03219 79 RTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEIAR 156 (236)
T ss_pred EEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHHH
Confidence 99999998876 9999986432110 0000 0001112244555553 6666677778899999999999999
Q ss_pred HhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 937 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 937 all~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
||+.+|++|||||||++||+.+++.+++.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 157 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 157 ALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 9999999999999999999999999999999876 57899999999999977 99999999999999999998865
No 159
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.1e-41 Score=370.87 Aligned_cols=214 Identities=26% Similarity=0.418 Sum_probs=180.5
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 3 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 78 (239)
T cd03296 3 IEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGF 78 (239)
T ss_pred EEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEE
Confidence 789999999975 369999999999999999999999999999999999999999999999999876543 3567999
Q ss_pred EcCCccccc-ccHHhhccCCCCC-------CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 867 IPQSPVLFS-GTVRFNLDPFSEH-------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 867 v~Q~~~lf~-~tv~~nl~~~~~~-------~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
+||++.+|. .|+++|+.+.... ...+.. ..+.++++.+ |++...+....+||||||||++|||||
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al 151 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIR-----AKVHELLKLV--QLDWLADRYPAQLSGGQRQRVALARAL 151 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHH-----HHHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHHH
Confidence 999999886 5999999753211 111111 1123344443 455555666678999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|||++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 152 AVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 999999999999999999999999999998753 6899999999999876 999999999999999999998754
No 160
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.9e-41 Score=391.36 Aligned_cols=221 Identities=24% Similarity=0.419 Sum_probs=187.0
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC--ceEEECCEecCCCChHHHhh
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER--GRILIDGFDIAKFGLMDLRK 862 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~--G~I~i~g~~i~~~~~~~~r~ 862 (1171)
+.++++||+++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...++ .++
T Consensus 4 ~~l~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r 79 (362)
T TIGR03258 4 GGIRIDHLRVAYGAN--TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKR 79 (362)
T ss_pred eEEEEEEEEEEECCe--EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHC
Confidence 469999999999753 69999999999999999999999999999999999999999 999999999977655 357
Q ss_pred heEEEcCCcccccc-cHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 863 ILGIIPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 863 ~i~~v~Q~~~lf~~-tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
.||||+|++.+|.. ||++|+.+.. .....++.+ .+.+.++. .|++...+....+|||||||||+|||||
T Consensus 80 ~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~-----~v~~~l~~--~gL~~~~~~~~~~LSgGq~QRvaLARAL 152 (362)
T TIGR03258 80 GLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAE-----RVADALKL--VGLGDAAAHLPAQLSGGMQQRIAIARAI 152 (362)
T ss_pred CEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHh--cCCCchhhCChhhCCHHHHHHHHHHHHH
Confidence 89999999999966 9999997531 122222111 12233333 2555555666778999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC---CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCC
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK---SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 1014 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~---~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~ 1014 (1171)
+.+|++|||||||++||+.++..+++.|+++.+ +.|+|+||||++++.. ||||++|++|++++.|+++++..++..
T Consensus 153 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p~~ 232 (362)
T TIGR03258 153 AIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPAD 232 (362)
T ss_pred hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcCc
Confidence 999999999999999999999999999988754 6899999999999876 999999999999999999999876644
Q ss_pred hH
Q 001055 1015 SF 1016 (1171)
Q Consensus 1015 ~~ 1016 (1171)
.|
T Consensus 233 ~~ 234 (362)
T TIGR03258 233 GF 234 (362)
T ss_pred HH
Confidence 43
No 161
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=2.4e-41 Score=393.58 Aligned_cols=212 Identities=26% Similarity=0.435 Sum_probs=185.6
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++|||
T Consensus 4 L~~~nls~~y~~~--~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 4 IDVSDLSVEFGDT--TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred EEEeeEEEEECCE--EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 8999999999753 79999999999999999999999999999999999999999999999999998888889999999
Q ss_pred EcCCccc-ccccHHhhccCCCC-----C---C---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001055 867 IPQSPVL-FSGTVRFNLDPFSE-----H---S---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 934 (1171)
Q Consensus 867 v~Q~~~l-f~~tv~~nl~~~~~-----~---~---~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~l 934 (1171)
|||++.+ |+.|+++|+.+... . . .+.+.++++..++.+ ..+....+||||||||++|
T Consensus 82 v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~-----------~~~~~~~~LSgGerQRv~I 150 (402)
T PRK09536 82 VPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQ-----------FADRPVTSLSGGERQRVLL 150 (402)
T ss_pred EccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHHHHHHHHH
Confidence 9999987 56799999864311 0 1 223445555544443 3444567899999999999
Q ss_pred HHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 935 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 935 Arall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
||||+++|+||||||||++||+.++..+++.|+++. .++|||++||+++.+.. |||+++|++|++++.|++++++..
T Consensus 151 ArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 151 ARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229 (402)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence 999999999999999999999999999999999876 47899999999999976 999999999999999999998753
No 162
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=4.1e-41 Score=367.89 Aligned_cols=216 Identities=34% Similarity=0.548 Sum_probs=192.8
Q ss_pred CccEEEEeeEEEeCCC-CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhh
Q 001055 784 SGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK 862 (1171)
Q Consensus 784 ~g~i~~~~vs~~y~~~-~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 862 (1171)
.+.++++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 4569999999999743 136999999999999999999999999999999999999999999999999987777677788
Q ss_pred heEEEcCCcccccccHHhhccCCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001055 863 ILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 863 ~i~~v~Q~~~lf~~tv~~nl~~~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 941 (1171)
.++|+||++.+|..|+++|+.+... ....++.+..+..++.++++.+|.|+++..+....+|||||||||+|||||+++
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~ 168 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRN 168 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 8999999999998899999975322 233344555566778899999988999888888999999999999999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEE
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRV 999 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i 999 (1171)
|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++++..||+|++|++|++
T Consensus 169 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 169 PQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999998777899999999999978999999999974
No 163
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.4e-41 Score=369.01 Aligned_cols=202 Identities=29% Similarity=0.425 Sum_probs=170.4
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChH---HHhhh
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM---DLRKI 863 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~---~~r~~ 863 (1171)
++++|++++|++..+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.. .+|+.
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 789999999964323699999999999999999999999999999999999999999999999998766543 36788
Q ss_pred eEEEcCCccccc-ccHHhhccCCC---CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001055 864 LGIIPQSPVLFS-GTVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 935 (1171)
Q Consensus 864 i~~v~Q~~~lf~-~tv~~nl~~~~---~~~----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 935 (1171)
++|+||++.+|. .|+++|+.+.. ... ++++.++++..+ +.........+||||||||++||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgG~~qrv~la 150 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVG-----------LEGKAHALPMQLSGGEQQRVAIA 150 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------ChhhhhCChhhCCHHHHHHHHHH
Confidence 999999999886 49999996421 111 223344444444 33444455568999999999999
Q ss_pred HHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEE
Q 001055 936 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRV 999 (1171)
Q Consensus 936 rall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i 999 (1171)
|||+.+|++|||||||++||+.+.+.+.+.|+++. .++|||+|||+++.+.. ||+|++|++|+|
T Consensus 151 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 151 RAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999875 37899999999999986 999999999975
No 164
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=2.4e-41 Score=388.16 Aligned_cols=216 Identities=27% Similarity=0.457 Sum_probs=184.6
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.|+++||+++|++. .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|+.||
T Consensus 41 ~i~i~nl~k~y~~~--~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig 117 (340)
T PRK13536 41 AIDLAGVSKSYGDK--AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIG 117 (340)
T ss_pred eEEEEEEEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEE
Confidence 49999999999753 6999999999999999999999999999999999999999999999999987643 46788999
Q ss_pred EEcCCccccc-ccHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001055 866 IIPQSPVLFS-GTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 866 ~v~Q~~~lf~-~tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 941 (1171)
|+||++.++. .|+.+|+.++.. ....+..+ .+.++++. .++....+....+||||||||++|||||+++
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~ll~~--~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~ 190 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEA-----VIPSLLEF--ARLESKADARVSDLSGGMKRRLTLARALIND 190 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHH--cCCchhhCCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999998874 599999975321 12222111 12233433 3555556666778999999999999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
|++|||||||+|||+.++..+++.|+++. .++|||++||+++++.. ||+|++|++|+++..|+++++.+.
T Consensus 191 P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 191 PQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999999999999875 47999999999999987 999999999999999999999764
No 165
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=4.1e-41 Score=388.14 Aligned_cols=217 Identities=23% Similarity=0.383 Sum_probs=183.8
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++ .++.|+|
T Consensus 3 L~i~~l~~~~~~~--~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~~ 78 (353)
T PRK10851 3 IEIANIKKSFGRT--QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVGF 78 (353)
T ss_pred EEEEEEEEEeCCe--EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEEE
Confidence 8899999999753 69999999999999999999999999999999999999999999999999977553 4578999
Q ss_pred EcCCcccccc-cHHhhccCCCC-------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 867 IPQSPVLFSG-TVRFNLDPFSE-------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~~-------~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
|||++.+|.. |+++|+.+... ....+.. ..+.+.++.+ +++...+....+||||||||++|||||
T Consensus 79 v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~L~~~~~~~~~~LSgGq~QRvalArAL 151 (353)
T PRK10851 79 VFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIK-----AKVTQLLEMV--QLAHLADRYPAQLSGGQKQRVALARAL 151 (353)
T ss_pred EecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHH-----HHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHHH
Confidence 9999999975 99999975321 1211111 1122333332 444455566678999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCC
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 1014 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~ 1014 (1171)
+.+|++|||||||++||+.++..+.+.|+++.+ ++|+|+||||++++.. ||+|++|++|+|++.|+++++..++..
T Consensus 152 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p~~ 230 (353)
T PRK10851 152 AVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPAT 230 (353)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 999999999999999999999999999998764 6899999999999877 999999999999999999999876543
No 166
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.4e-41 Score=372.36 Aligned_cols=220 Identities=29% Similarity=0.440 Sum_probs=180.9
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCC---hHHHhhh
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDLRKI 863 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~---~~~~r~~ 863 (1171)
++++||+++|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 4689999999752 36999999999999999999999999999999999999999999999999988766 3457788
Q ss_pred eEEEcCCccccc-ccHHhhccCCCCCCHH---HH---HHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001055 864 LGIIPQSPVLFS-GTVRFNLDPFSEHSDA---DL---WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 936 (1171)
Q Consensus 864 i~~v~Q~~~lf~-~tv~~nl~~~~~~~~~---~i---~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 936 (1171)
++|+||++.+|. .|+++|+.+....... .+ ........+.+.++.+ |+....+..+.+||||||||++|||
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~ 157 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERV--GLLDKAYQRADQLSGGQQQRVAIAR 157 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHc--CChhhhCCCcccCCHHHHHHHHHHH
Confidence 999999998886 5999999642110000 00 0000011223344442 4555566677899999999999999
Q ss_pred HhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 937 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 937 all~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
||+.+|+||||||||++||+.+...+.+.|+++. .++|||++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 158 ALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 9999999999999999999999999999999875 37899999999999986 9999999999999999998874
No 167
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-41 Score=357.66 Aligned_cols=188 Identities=29% Similarity=0.415 Sum_probs=166.2
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee-------cCcEEEEec
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------RGTVAYVPQ 234 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~-------~~~i~~v~Q 234 (1171)
.+.++++++.|+. ..+|+|+||+|++||+++|+|||||||||||++|+|+.+|++|.+... ...+|||+|
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ 79 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQ 79 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEec
Confidence 5899999999974 579999999999999999999999999999999999999999875442 235999999
Q ss_pred CCCCC-cccHHHHHhcCCCC-------CHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccC
Q 001055 235 VSWIF-NATVRDNILFGSAF-------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 306 (1171)
Q Consensus 235 ~~~l~-~~Tv~eni~~g~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~ 306 (1171)
++.|+ -.||+|||.|+... ..++..+.++.++|..+-+.+|. +|||||||||||||||+.+
T Consensus 80 ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~-----------qLSGGMrQRVaiARAL~~~ 148 (248)
T COG1116 80 EDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH-----------QLSGGMRQRVAIARALATR 148 (248)
T ss_pred cCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCcc-----------ccChHHHHHHHHHHHHhcC
Confidence 99997 58999999998542 12456778889999988888884 8999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEeCC
Q 001055 307 SDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEG 363 (1171)
Q Consensus 307 ~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G 363 (1171)
|+||+||||+++||+.++..+.+.+.+.+. .++|+|+||||.++.-. +|||++|.++
T Consensus 149 P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 149 PKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred CCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 999999999999999999999998888764 48999999999998654 7999999984
No 168
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=7e-41 Score=373.44 Aligned_cols=226 Identities=22% Similarity=0.367 Sum_probs=200.9
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 229 (1171)
.|+++|++++|+.. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ ++|.+.. +++.|
T Consensus 2 ~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 2 QMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred eEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 38899999999742 4579999999999999999999999999999999999997 6665422 23469
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCE
Q 001055 230 AYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 309 (1171)
Q Consensus 230 ~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~v 309 (1171)
+|+||+|.+|++||++|+........+++.++++.+++...++.+|+++++.++++|.+||||||||++|||||+.+|+|
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999964333566778889999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHHHhc
Q 001055 310 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENAG 389 (1171)
Q Consensus 310 llLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 389 (1171)
+||||||++||+.+.+.+.+.+... ..++|+|+|||+++++..||||++|++|++++.|+++++.++...+..++.+.+
T Consensus 160 lllDEpts~LD~~~~~~l~~~l~~~-~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 238 (275)
T cd03289 160 LLLDEPSAHLDPITYQVIRKTLKQA-FADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQAISPSD 238 (275)
T ss_pred EEEECccccCCHHHHHHHHHHHHHh-cCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHHHhhcc
Confidence 9999999999999999999877654 358999999999999988999999999999999999999988788888876654
Q ss_pred h
Q 001055 390 K 390 (1171)
Q Consensus 390 ~ 390 (1171)
.
T Consensus 239 ~ 239 (275)
T cd03289 239 R 239 (275)
T ss_pred h
Confidence 3
No 169
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=1.7e-41 Score=390.31 Aligned_cols=210 Identities=28% Similarity=0.424 Sum_probs=179.9
Q ss_pred EeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH----hhheEEEcCC
Q 001055 795 RYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL----RKILGIIPQS 870 (1171)
Q Consensus 795 ~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~----r~~i~~v~Q~ 870 (1171)
.|+. +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++..+ |+.|+||||+
T Consensus 2 ~~~~--~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~ 79 (363)
T TIGR01186 2 KTGG--KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ 79 (363)
T ss_pred ccCC--ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECC
Confidence 4543 369999999999999999999999999999999999999999999999999999888777 7789999999
Q ss_pred cccccc-cHHhhccCCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 871 PVLFSG-TVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 871 ~~lf~~-tv~~nl~~~~---~~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
+.+|+. ||++|+.+.. .... +++.++++.+ |++...++.+.+|||||||||+|||||+.+|
T Consensus 80 ~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~v-----------gL~~~~~~~p~~LSGGq~QRV~lARAL~~~p 148 (363)
T TIGR01186 80 FALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLV-----------GLEEYEHRYPDELSGGMQQRVGLARALAAEP 148 (363)
T ss_pred CcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------CCchhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999975 9999996432 1122 2233344443 4455556666789999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCChHH
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 1017 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 1017 (1171)
+||||||||++||+.+++.+++.|.++. .++|+|+||||++++.. ||+|++|++|++++.|+++++++++...|.
T Consensus 149 ~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~ 226 (363)
T TIGR01186 149 DILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYV 226 (363)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHH
Confidence 9999999999999999999999999875 37999999999999766 999999999999999999999876654444
No 170
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.2e-41 Score=349.14 Aligned_cols=212 Identities=29% Similarity=0.475 Sum_probs=180.0
Q ss_pred CCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------
Q 001055 160 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 224 (1171)
Q Consensus 160 ~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------- 224 (1171)
.+.|++++++|+|. ++.+++||||+|++||+++|+||||||||||||+|.|+++|++|.+..
T Consensus 6 ~~~I~vr~v~~~fG---~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ 82 (263)
T COG1127 6 EPLIEVRGVTKSFG---DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYE 82 (263)
T ss_pred cceEEEeeeeeecC---CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHH
Confidence 35799999999996 478999999999999999999999999999999999999999987643
Q ss_pred ecCcEEEEecCCCCC-cccHHHHHhcCC----CCCHHHH----HHHHHHcCchHH-HhcCCCCCccccCCCCCccChHHH
Q 001055 225 IRGTVAYVPQVSWIF-NATVRDNILFGS----AFEPARY----EKAIDVTSLQHD-LDLLPGGDVTEIGERGVNISGGQK 294 (1171)
Q Consensus 225 ~~~~i~~v~Q~~~l~-~~Tv~eni~~g~----~~~~~~~----~~~~~~~~l~~~-~~~~~~~~~~~i~~~g~~LSGGqr 294 (1171)
+++++|+++|...|| +.||+||+.|.. ..++..+ ..-++.++|... .+.+| .+||||++
T Consensus 83 ir~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~ 151 (263)
T COG1127 83 IRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMR 151 (263)
T ss_pred HHhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHH
Confidence 455799999999999 679999999852 2333333 334678888877 77777 48999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChh
Q 001055 295 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFE 372 (1171)
Q Consensus 295 qRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 372 (1171)
+|+|||||++.||+++++||||+||||.+...+-+.+.+.+.. |.|+|+||||++.+.. |||++++.+|+|+.+|+++
T Consensus 152 KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~ 231 (263)
T COG1127 152 KRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPE 231 (263)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHH
Confidence 9999999999999999999999999999998887766555443 8999999999999876 6999999999999999999
Q ss_pred HHhhc-chHHHHHH
Q 001055 373 DLSNN-GELFQKLM 385 (1171)
Q Consensus 373 ~l~~~-~~~~~~~~ 385 (1171)
++.+. .+..++++
T Consensus 232 el~~sd~P~v~qf~ 245 (263)
T COG1127 232 ELLASDDPWVRQFF 245 (263)
T ss_pred HHHhCCCHHHHHHh
Confidence 99765 33444433
No 171
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=8.9e-42 Score=353.82 Aligned_cols=203 Identities=27% Similarity=0.430 Sum_probs=176.5
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 229 (1171)
+|+++|+||.|. ++.+++|+||+|++||+++++|||||||||+||+|.++++|++|.+.. +|.+|
T Consensus 1 MI~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~I 77 (309)
T COG1125 1 MIEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKI 77 (309)
T ss_pred CceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhh
Confidence 489999999997 468999999999999999999999999999999999999999987532 56679
Q ss_pred EEEecCCCCC-cccHHHHHhcCCC---CCH----HHHHHHHHHcCchH--HHhcCCCCCccccCCCCCccChHHHHHHHH
Q 001055 230 AYVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQH--DLDLLPGGDVTEIGERGVNISGGQKQRVSM 299 (1171)
Q Consensus 230 ~~v~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~--~~~~~~~~~~~~i~~~g~~LSGGqrqRv~L 299 (1171)
|||-|..-|| ..||.|||.+-.. +++ ++..+.++..+|.. ..++.| .+|||||+|||.+
T Consensus 78 GYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv 146 (309)
T COG1125 78 GYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGV 146 (309)
T ss_pred hhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHH
Confidence 9999999998 7899999987532 333 34555677777753 456666 4899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 001055 300 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 300 AraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
||||+.+|+|+++||||++|||.++..+-+.+++..+ -++|+|+||||+++.- .+|||++|++|+++..+++++++.+
T Consensus 147 ~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~ 226 (309)
T COG1125 147 ARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226 (309)
T ss_pred HHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC
Confidence 9999999999999999999999999999888777654 4999999999999864 5799999999999999999999887
Q ss_pred c
Q 001055 378 G 378 (1171)
Q Consensus 378 ~ 378 (1171)
+
T Consensus 227 P 227 (309)
T COG1125 227 P 227 (309)
T ss_pred c
Confidence 4
No 172
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=3.6e-41 Score=367.37 Aligned_cols=216 Identities=29% Similarity=0.455 Sum_probs=180.6
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH-hhheE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKILG 865 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i~ 865 (1171)
|+++||+++|++. ++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (222)
T cd03224 1 LEVENLNAGYGKS--QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIG 78 (222)
T ss_pred CEEeeEEeecCCe--eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeE
Confidence 4789999999753 69999999999999999999999999999999999999999999999999987776554 56799
Q ss_pred EEcCCcccccc-cHHhhccCCCCCC-HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFSEHS-DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 943 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~~~~-~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~ 943 (1171)
|+||++.+|.. |+++|+.+..... ..+.. ..+.+.++.++ +++...+....+||||||||++|||||+.+|+
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~-----~~~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 152 (222)
T cd03224 79 YVPEGRRIFPELTVEENLLLGAYARRRAKRK-----ARLERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRPK 152 (222)
T ss_pred EeccccccCCCCcHHHHHHHHhhhcCchhHH-----HHHHHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999998876 9999997532211 11111 11222333321 23444566677899999999999999999999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 944 ILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 944 iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
+|||||||++||+.++..+++.|+++. .++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 153 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 153 LLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 999999999999999999999999875 47899999999999877 99999999999999999888753
No 173
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=8.3e-41 Score=370.32 Aligned_cols=217 Identities=29% Similarity=0.490 Sum_probs=182.9
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-----CceEEECCEecCCC--ChHH
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAKF--GLMD 859 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~-----~G~I~i~g~~i~~~--~~~~ 859 (1171)
++++||+++|++. ++++|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.++... +...
T Consensus 2 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~ 79 (247)
T TIGR00972 2 IEIENLNLFYGEK--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVE 79 (247)
T ss_pred EEEEEEEEEECCe--eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHH
Confidence 7899999999753 6999999999999999999999999999999999999998 99999999998753 3455
Q ss_pred HhhheEEEcCCcccccccHHhhccCCC---C-CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001055 860 LRKILGIIPQSPVLFSGTVRFNLDPFS---E-HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 931 (1171)
Q Consensus 860 ~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~-~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqr 931 (1171)
+++.++|+||++.+|..|+++|+.+.. . ... +.+.++++..++.+.+ ....+....+||||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~qr 152 (247)
T TIGR00972 80 LRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEV-------KDRLHDSALGLSGGQQQR 152 (247)
T ss_pred HHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcch-------hhHhhCCcccCCHHHHHH
Confidence 678899999999988899999996421 1 111 1233333333332111 034556678899999999
Q ss_pred HHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 932 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 932 l~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 153 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (247)
T TIGR00972 153 LCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232 (247)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999987767899999999999876 99999999999999999999875
Q ss_pred cC
Q 001055 1011 NE 1012 (1171)
Q Consensus 1011 ~~ 1012 (1171)
..
T Consensus 233 ~~ 234 (247)
T TIGR00972 233 NP 234 (247)
T ss_pred CC
Confidence 43
No 174
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=2.3e-41 Score=364.06 Aligned_cols=203 Identities=29% Similarity=0.483 Sum_probs=176.5
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 229 (1171)
.++++|++|.|+ ++++++|+||++++|++++|+||||||||||||+|+|.++|.+|.+.. +.+.+
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 478999999997 468999999999999999999999999999999999999999886543 22369
Q ss_pred EEEecCCCC-CcccHHHHHhcCCCC-----------CHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHH
Q 001055 230 AYVPQVSWI-FNATVRDNILFGSAF-----------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 297 (1171)
Q Consensus 230 ~~v~Q~~~l-~~~Tv~eni~~g~~~-----------~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv 297 (1171)
|||||.+.. +..||+|-+.+|+.. |.+.+.++++.+++.+..++. ..+|||||||||
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-----------~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-----------VDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-----------ccccChhHHHHH
Confidence 999999866 588999999998521 223466778888888776543 358999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhc-cCCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHh
Q 001055 298 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLS 375 (1171)
Q Consensus 298 ~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~-~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~ 375 (1171)
.|||||+++|++++||||||+||....-.+++.+.+.. .+|+|+|+|+||+.... .||+++.|++|+++.+|++++++
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999888776 45999999999998865 68999999999999999999887
Q ss_pred hcc
Q 001055 376 NNG 378 (1171)
Q Consensus 376 ~~~ 378 (1171)
+..
T Consensus 228 T~e 230 (258)
T COG1120 228 TEE 230 (258)
T ss_pred CHH
Confidence 653
No 175
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=3.2e-41 Score=367.26 Aligned_cols=214 Identities=26% Similarity=0.435 Sum_probs=178.9
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++||+++|++..+++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...++++++|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEE
Confidence 478999999975223699999999999999999999999999999999999999999999999998754 3566788999
Q ss_pred EcCCcccc-cccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 867 IPQSPVLF-SGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 867 v~Q~~~lf-~~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
+||++.+| ..|+++|+.+.. .....+.. ..+.++++.+ ++....+....+||||||||++|||||+.+|
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 152 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIK-----EEVELLLRVL--GLTDKANKRARTLSGGMKRKLSLAIALIGGP 152 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCHHHHhChhhhCCHHHHHHHHHHHHHhcCC
Confidence 99999988 469999986421 11111111 1123333332 4444445556789999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHH
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1008 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 1008 (1171)
++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 153 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 153 SVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 999999999999999999999999998777999999999999976 999999999999999998875
No 176
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-41 Score=365.98 Aligned_cols=206 Identities=26% Similarity=0.455 Sum_probs=171.8
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGM 76 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEE
Confidence 468999999965 369999999999999999999999999999999999999999999999999876442 4678999
Q ss_pred EcCCccccc-ccHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 867 IPQSPVLFS-GTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 867 v~Q~~~lf~-~tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
+||++.+|. .|+++|+.+... ....+.. ..+.++++. .|++...+....+||||||||++|||||+.+|
T Consensus 77 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~--~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p 149 (213)
T cd03259 77 VFQDYALFPHLTVAENIAFGLKLRGVPKAEIR-----ARVRELLEL--VGLEGLLNRYPHELSGGQQQRVALARALAREP 149 (213)
T ss_pred EcCchhhccCCcHHHHHHhHHHHcCCCHHHHH-----HHHHHHHHH--cCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 999998885 599999964211 1111111 112333433 24555555666789999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEec
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
++|||||||++||+.++..+++.|+++.+ ++|||++||+++++.. ||+|++|++|++++.|
T Consensus 150 ~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 150 SLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998753 7899999999999877 9999999999998765
No 177
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.8e-41 Score=377.04 Aligned_cols=215 Identities=27% Similarity=0.446 Sum_probs=184.6
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++||+++|+...+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.|+
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 38999999999643346999999999999999999999999999999999999999999999999998877777888999
Q ss_pred EEcCCc--ccccccHHhhccCCCC---CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001055 866 IIPQSP--VLFSGTVRFNLDPFSE---HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 936 (1171)
Q Consensus 866 ~v~Q~~--~lf~~tv~~nl~~~~~---~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 936 (1171)
|+||++ .++..|+.+|+.+... ... +.+.++++..++ +.........||||||||++|||
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL-----------~~~~~~~~~~LS~G~~qrv~lar 153 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGM-----------EDFLNREPHRLSGGQKQRVAIAG 153 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCC-----------hhhhhCCcccCCHHHHHHHHHHH
Confidence 999998 4556799999975321 122 223344444444 44444555689999999999999
Q ss_pred HhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhc
Q 001055 937 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 937 all~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
||+.+|+||||||||+|||+.+...+++.|+++.+ ++|||++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 154 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 154 VLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999998764 7899999999999888999999999999999999988753
No 178
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=5.8e-41 Score=388.52 Aligned_cols=216 Identities=24% Similarity=0.405 Sum_probs=185.5
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. ++.||
T Consensus 14 ~L~l~~l~~~~~~~--~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 89 (375)
T PRK09452 14 LVELRGISKSFDGK--EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHVN 89 (375)
T ss_pred eEEEEEEEEEECCe--EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 49999999999753 699999999999999999999999999999999999999999999999999876653 57899
Q ss_pred EEcCCcccccc-cHHhhccCCCC---CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFSE---HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 937 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~~---~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 937 (1171)
||||++.+|.. ||++|+.+... ... +++.++++..++ +...+....+|||||||||+||||
T Consensus 90 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~p~~LSgGq~QRVaLARa 158 (375)
T PRK09452 90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQL-----------EEFAQRKPHQLSGGQQQRVAIARA 158 (375)
T ss_pred EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCC-----------chhhhCChhhCCHHHHHHHHHHHH
Confidence 99999999966 99999975321 122 223444444444 444445557899999999999999
Q ss_pred hccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCC
Q 001055 938 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 1014 (1171)
Q Consensus 938 ll~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~ 1014 (1171)
|+.+|++|||||||++||+.++..+.+.|+++.+ +.|+|+||||.+++.. ||+|++|++|+|++.|+++++..++..
T Consensus 159 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~~ 238 (375)
T PRK09452 159 VVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKN 238 (375)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 9999999999999999999999999999998764 7899999999999876 999999999999999999999876654
Q ss_pred hH
Q 001055 1015 SF 1016 (1171)
Q Consensus 1015 ~~ 1016 (1171)
.|
T Consensus 239 ~~ 240 (375)
T PRK09452 239 LF 240 (375)
T ss_pred HH
Confidence 33
No 179
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.8e-41 Score=370.41 Aligned_cols=218 Identities=27% Similarity=0.462 Sum_probs=185.0
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++||+++|++. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 4689999999752 369999999999999999999999999999999999999999999999999987777777889999
Q ss_pred EcCCccccc-ccHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcch--hhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 867 IPQSPVLFS-GTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDA--QVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 867 v~Q~~~lf~-~tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~--~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
+||++.+|. .|+++|+.+... ....+. ...+.++++.+ |+.. ..++.+.+||||||||++|||||++
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~~ 152 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKI-----RERADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALAA 152 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHhc
Confidence 999999886 599999964311 111111 12234455553 4443 5566778899999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcC
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~ 1012 (1171)
+|++|||||||++||+.+.+.+.+.|+++.+ ++|||++||+++.+.. ||+|++|++|++++.|+++++.+..
T Consensus 153 ~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 227 (242)
T cd03295 153 DPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSP 227 (242)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcCC
Confidence 9999999999999999999999999998753 7899999999998876 9999999999999999999887543
No 180
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.9e-41 Score=371.52 Aligned_cols=218 Identities=24% Similarity=0.393 Sum_probs=183.4
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCEecCC--CChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~-----p~~G~I~i~g~~i~~--~~~~ 858 (1171)
.|+++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++.. .+..
T Consensus 6 ~l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 6 KMEARGLSFFYGDF--QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred EEEEeeeEEEECCe--eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 49999999999643 69999999999999999999999999999999999975 689999999999864 2345
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCC---CC-C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~-~----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
.+|+.++|+||++.+|..|+++|+.+.. .. . .+++.++++.+++.+.+ ....+....+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~q 156 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV-------KDRLHESALGLSGGQQQ 156 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh-------hHHhhCCcccCCHHHHH
Confidence 6788999999999999889999996421 11 1 12334444444443222 22345667789999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
||+|||||+.+|+||||||||++||+.+...+.+.|+++.+++|||++||+++++.. ||+|++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998667899999999999876 9999999999999999999987
Q ss_pred hcC
Q 001055 1010 SNE 1012 (1171)
Q Consensus 1010 ~~~ 1012 (1171)
+..
T Consensus 237 ~~~ 239 (253)
T PRK14242 237 TRP 239 (253)
T ss_pred cCC
Confidence 543
No 181
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-41 Score=377.98 Aligned_cols=217 Identities=23% Similarity=0.396 Sum_probs=181.9
Q ss_pred EEEEeeEEEeCCCC---CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCC----CChHH
Q 001055 787 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK----FGLMD 859 (1171)
Q Consensus 787 i~~~~vs~~y~~~~---~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~----~~~~~ 859 (1171)
|+++||+|+|++.. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .....
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997432 259999999999999999999999999999999999999999999999999863 23456
Q ss_pred HhhheEEEcCCc--ccccccHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHH
Q 001055 860 LRKILGIIPQSP--VLFSGTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLS 933 (1171)
Q Consensus 860 ~r~~i~~v~Q~~--~lf~~tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~LSgGqkqrl~ 933 (1171)
+|+.+|||+|+| .+|..|+.+|+.+... ....++.+ .+.+.++.+ |+. ...+....+||||||||++
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~LSgGqkqrva 154 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEK-----IAAEKLEMV--GLADEFWEKSPFELSGGQMRRVA 154 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CCChhhccCCcccCCHHHHHHHH
Confidence 788999999998 6888899999975321 12222211 122333332 443 2445667889999999999
Q ss_pred HHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 934 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 934 lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
|||||+.+|+||||||||++||+.+.+.+.+.|+++. .++|||++||+++.+.. ||||++|++|++++.|+++++..
T Consensus 155 iA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 155 IAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred HHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 9999999999999999999999999999999998875 47899999999999866 99999999999999999999875
No 182
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-40 Score=370.80 Aligned_cols=219 Identities=25% Similarity=0.405 Sum_probs=184.2
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEecCC--CChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FGLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-----~~G~I~i~g~~i~~--~~~~ 858 (1171)
.++++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .+..
T Consensus 7 ~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 7 IIETENLNLFYTDF--KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred eEEEeeeEEEeCCc--eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 59999999999753 699999999999999999999999999999999999997 48999999998853 2344
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCCC----CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFSE----HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~----~~----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
.+|+.|+|+||++.+|..|+++|+.+... .. ++.+.++++.+++.+.+ ....+....+|||||||
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgG~~q 157 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV-------KDKLNTNALSLSGGQQQ 157 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh-------HHHHhCCcccCCHHHHH
Confidence 57888999999999888899999974321 11 12234444444432211 22345567789999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
|++|||||+.+|++|||||||++||+.+...+++.|+++.+++|+|++||+++++.. ||||++|++|++++.|+++++.
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 158 RLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998767999999999999876 9999999999999999999998
Q ss_pred hcCC
Q 001055 1010 SNEG 1013 (1171)
Q Consensus 1010 ~~~~ 1013 (1171)
+.+.
T Consensus 238 ~~~~ 241 (254)
T PRK14273 238 FNPK 241 (254)
T ss_pred hCCC
Confidence 6544
No 183
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=5.3e-41 Score=381.51 Aligned_cols=215 Identities=24% Similarity=0.409 Sum_probs=185.9
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++|++++|++. .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+.+||
T Consensus 3 l~~~~l~~~~~~~--~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~ 79 (301)
T TIGR03522 3 IRVSSLTKLYGTQ--NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEECCE--EEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEE
Confidence 8899999999743 69999999999999999999999999999999999999999999999999876 44567889999
Q ss_pred EcCCcccccc-cHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 867 IPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
+||++.+|.. |+.+|+.++.. ...++..+ .+.+.++.+ |++...+.....||||||||++|||||+++|
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~p 152 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQ-----RVEEMIELV--GLRPEQHKKIGQLSKGYRQRVGLAQALIHDP 152 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchHhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence 9999998866 99999974321 11111111 123344443 5666667777899999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
++|||||||+|||+.+.+.+++.|+++..++|||++||+++++.. ||||++|++|++++.|+++++.+.
T Consensus 153 ~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 153 KVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 999999999999999999999999998778999999999999988 999999999999999999998764
No 184
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=6.8e-41 Score=370.31 Aligned_cols=220 Identities=28% Similarity=0.417 Sum_probs=180.1
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCCh---HHHhhh
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL---MDLRKI 863 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~---~~~r~~ 863 (1171)
++++||+++|+.+ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.
T Consensus 2 l~~~~l~~~~~~~-~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPNG-KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCCC-cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 7899999999622 369999999999999999999999999999999999999999999999999876654 346788
Q ss_pred eEEEcCCccccc-ccHHhhccCCCCCCH---HHH---HHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001055 864 LGIIPQSPVLFS-GTVRFNLDPFSEHSD---ADL---WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 936 (1171)
Q Consensus 864 i~~v~Q~~~lf~-~tv~~nl~~~~~~~~---~~i---~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 936 (1171)
++|+||++.+|. .|+++|+.+...... ... ........+.++++.+ |++...+....+||||||||++|||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~ 158 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV--GLADKAYQRADQLSGGQQQRVAIAR 158 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHH
Confidence 999999998886 599999964211000 000 0000111233344442 5555566677889999999999999
Q ss_pred HhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 937 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 937 all~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||++++|++|++++.|+++++.
T Consensus 159 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (243)
T TIGR02315 159 ALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELD 234 (243)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHhC
Confidence 99999999999999999999999999999998753 7899999999999876 9999999999999999998863
No 185
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.5e-41 Score=377.75 Aligned_cols=218 Identities=22% Similarity=0.407 Sum_probs=184.7
Q ss_pred EEEEeeEEEeCCCC---CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCC----ChHH
Q 001055 787 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF----GLMD 859 (1171)
Q Consensus 787 i~~~~vs~~y~~~~---~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~----~~~~ 859 (1171)
++++||+++|++.. +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996421 3699999999999999999999999999999999999999999999999998653 2356
Q ss_pred HhhheEEEcCCc--ccccccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHH
Q 001055 860 LRKILGIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLS 933 (1171)
Q Consensus 860 ~r~~i~~v~Q~~--~lf~~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~LSgGqkqrl~ 933 (1171)
+|+.||||||+| .+|..|+.+|+.+.. ..+..+..+ .+.++++. .|++ ...+..+.+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~--~gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKN-----YAHRLLMD--LGFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHH-----HHHHHHHH--cCCChhhhhCCcccCCHHHHHHHH
Confidence 788999999997 578789999997532 112222221 13344554 3676 3456778899999999999
Q ss_pred HHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 934 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 934 lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
|||||+.+|+||||||||++||+.+...+.+.|+++. .++|||+|||+++.+.. ||||++|++|++++.|+++++.+
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999875 37999999999999866 99999999999999999999875
Q ss_pred c
Q 001055 1011 N 1011 (1171)
Q Consensus 1011 ~ 1011 (1171)
.
T Consensus 236 ~ 236 (286)
T PRK13646 236 D 236 (286)
T ss_pred C
Confidence 3
No 186
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-41 Score=390.21 Aligned_cols=217 Identities=22% Similarity=0.348 Sum_probs=182.9
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++ .++.|+|
T Consensus 4 l~i~~l~~~~~~~--~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i~~ 79 (369)
T PRK11000 4 VTLRNVTKAYGDV--VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGVGM 79 (369)
T ss_pred EEEEEEEEEeCCe--EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCEEE
Confidence 8999999999753 69999999999999999999999999999999999999999999999999987654 3567999
Q ss_pred EcCCcccccc-cHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 867 IPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
|||++.+|.. ||++|+.+... ....+.. ..+.+.++. .|++...+....+|||||||||+|||||+.+|
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~-----~~~~~~l~~--lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P 152 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEIN-----QRVNQVAEV--LQLAHLLDRKPKALSGGQRQRVAIGRTLVAEP 152 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHH-----HHHHHHHHH--cCChhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 9999999965 99999975321 1221111 112233333 24444455566789999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCC
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 1014 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~ 1014 (1171)
++|||||||++||+.+++.+.+.|+++.+ +.|+|+||||++++.. ||+|++|++|++++.|+++++...+..
T Consensus 153 ~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~~ 227 (369)
T PRK11000 153 SVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAN 227 (369)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 99999999999999999999999998753 7899999999999877 999999999999999999999876543
No 187
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.2e-41 Score=368.20 Aligned_cols=217 Identities=28% Similarity=0.458 Sum_probs=181.9
Q ss_pred EEEEeeEEEeCCCC--CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---Hh
Q 001055 787 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LR 861 (1171)
Q Consensus 787 i~~~~vs~~y~~~~--~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~r 861 (1171)
|+++|++++|++.. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996431 26999999999999999999999999999999999999999999999999987765443 47
Q ss_pred hheEEEcCCccccc-ccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001055 862 KILGIIPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 937 (1171)
Q Consensus 862 ~~i~~v~Q~~~lf~-~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 937 (1171)
+.++|+||++.+|. .|+++|+.+.. .....+. ...+.++++.+ |++...+....+||||||||++||||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~a 154 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEI-----EERVLELLELV--GLEDKADAYPAQLSGGQKQRVGIARA 154 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHC--CChhhhhcChhhCCHHHHHHHHHHHH
Confidence 78999999999986 59999986421 1111111 11233444443 55555556667899999999999999
Q ss_pred hccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 938 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 938 ll~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
|+.+|++|||||||++||+.+...+.+.|+++.+ ++|||++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 155 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 155 LANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 9999999999999999999999999999998753 7899999999999877 99999999999999999988864
No 188
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.3e-41 Score=365.32 Aligned_cols=208 Identities=28% Similarity=0.465 Sum_probs=176.4
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++|++++|++. ++|+|+||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....++++++|
T Consensus 1 i~~~~~~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGDF--EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECCE--EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCc-ChHHHhhcEEE
Confidence 4789999999753 69999999999999999999999999999999999999999999999998865 33566788999
Q ss_pred EcCCcccccc-cHHhhccCCC---CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 867 IPQSPVLFSG-TVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~---~~~----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
+||++.++.. |+++|+.+.. ... ++++.+.++.. |++...+....+||||||||++||||+
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFV-----------GLLEAADRLVKTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CCHHHhhCChhhCCHHHHHHHHHHHHH
Confidence 9999988865 9999986421 111 12233334443 344444555678999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHH
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1008 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 1008 (1171)
+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++++.. ||+|++|++|++++.|+++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999999998753 6899999999999887 999999999999999988764
No 189
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-40 Score=370.49 Aligned_cols=219 Identities=25% Similarity=0.398 Sum_probs=185.1
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCEecCC--CCh
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGL 857 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~-----p~~G~I~i~g~~i~~--~~~ 857 (1171)
+.++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 12 ~~l~~~~l~~~~~~~--~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 12 SKIQVRNLNFYYGKF--HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89 (260)
T ss_pred ceEEEEEEEEEeCCe--EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence 459999999999753 69999999999999999999999999999999999986 589999999999853 345
Q ss_pred HHHhhheEEEcCCcccccccHHhhccCCC----CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHH
Q 001055 858 MDLRKILGIIPQSPVLFSGTVRFNLDPFS----EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 929 (1171)
Q Consensus 858 ~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~----~~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqk 929 (1171)
..+|++|+|+||++.+|..|+++|+.+.. ..+. +++.++++.+++.+. +....++...+||||||
T Consensus 90 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~Gq~ 162 (260)
T PRK10744 90 ALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNE-------VKDKLHQSGYSLSGGQQ 162 (260)
T ss_pred HHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChh-------hHHHHhcCCCCCCHHHH
Confidence 56788999999999998899999997431 1122 223444444433221 22445666788999999
Q ss_pred HHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHH
Q 001055 930 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1008 (1171)
Q Consensus 930 qrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 1008 (1171)
||++|||||+.+|+||||||||++||+.+++.+.+.|+++..++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 163 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (260)
T PRK10744 163 QRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTI 242 (260)
T ss_pred HHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998667899999999999876 999999999999999999998
Q ss_pred hhcC
Q 001055 1009 LSNE 1012 (1171)
Q Consensus 1009 ~~~~ 1012 (1171)
....
T Consensus 243 ~~~~ 246 (260)
T PRK10744 243 FTKP 246 (260)
T ss_pred HhCC
Confidence 7643
No 190
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-40 Score=369.61 Aligned_cols=218 Identities=28% Similarity=0.444 Sum_probs=184.1
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEecCCCChHHH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKFGLMDL 860 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-----~~G~I~i~g~~i~~~~~~~~ 860 (1171)
.++++||+++|++. ++++|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+...+
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 80 (250)
T PRK14247 3 KIEIRDLKVSFGQV--EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIEL 80 (250)
T ss_pred eEEEEeeEEEECCe--eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHH
Confidence 38999999999753 699999999999999999999999999999999999984 69999999999988777788
Q ss_pred hhheEEEcCCcccc-cccHHhhccCCCC-----CC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 861 RKILGIIPQSPVLF-SGTVRFNLDPFSE-----HS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 861 r~~i~~v~Q~~~lf-~~tv~~nl~~~~~-----~~----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
|+.|+|+||++.+| ..|+++|+.+... .. ++++.++++..++.+.+ +...+....+|||||||
T Consensus 81 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~q 153 (250)
T PRK14247 81 RRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEV-------KDRLDAPAGKLSGGQQQ 153 (250)
T ss_pred hccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCCcccCCHHHHH
Confidence 88999999999765 5699999964211 01 12233444444332211 12345566789999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHH
Confidence 999999999999999999999999999999999999998678999999999999876 9999999999999999999987
Q ss_pred hcC
Q 001055 1010 SNE 1012 (1171)
Q Consensus 1010 ~~~ 1012 (1171)
+..
T Consensus 234 ~~~ 236 (250)
T PRK14247 234 TNP 236 (250)
T ss_pred cCC
Confidence 643
No 191
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-40 Score=377.16 Aligned_cols=218 Identities=28% Similarity=0.404 Sum_probs=182.2
Q ss_pred EEEEeeEEEeCCCC---CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCC----CChHH
Q 001055 787 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK----FGLMD 859 (1171)
Q Consensus 787 i~~~~vs~~y~~~~---~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~----~~~~~ 859 (1171)
++++||+++|++.. .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 88999999996421 369999999999999999999999999999999999999999999999999863 23456
Q ss_pred HhhheEEEcCCc--ccccccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHH
Q 001055 860 LRKILGIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLS 933 (1171)
Q Consensus 860 ~r~~i~~v~Q~~--~lf~~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~LSgGqkqrl~ 933 (1171)
.|+.||||||+| .+|+.||++|+.+.. ..+..+..+ .+.+.++.+ |++ ...+..+.+|||||||||+
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQ-----KAREMIELV--GLPEELLARSPFELSGGQMRRVA 155 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCChhhhhCCcccCCHHHHHHHH
Confidence 778899999998 577789999996431 112222211 123334432 454 3345667889999999999
Q ss_pred HHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 934 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 934 lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
|||||+.+|++|||||||++||+.+...+.+.|+++.. +.|||+|||+++.+.. ||||++|++|++++.|+++++.+
T Consensus 156 lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 156 IAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999999998753 7899999999999876 99999999999999999999875
Q ss_pred c
Q 001055 1011 N 1011 (1171)
Q Consensus 1011 ~ 1011 (1171)
.
T Consensus 236 ~ 236 (290)
T PRK13634 236 D 236 (290)
T ss_pred C
Confidence 3
No 192
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.5e-41 Score=378.61 Aligned_cols=218 Identities=22% Similarity=0.349 Sum_probs=180.8
Q ss_pred EEEEeeEEEeCCCC---CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCC---------
Q 001055 787 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK--------- 854 (1171)
Q Consensus 787 i~~~~vs~~y~~~~---~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~--------- 854 (1171)
|+++||+++|++.. .++|+|+||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 88999999996432 259999999999999999999999999999999999999999999999887632
Q ss_pred ---------------CChHHHhhheEEEcCCc--ccccccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcc
Q 001055 855 ---------------FGLMDLRKILGIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD 914 (1171)
Q Consensus 855 ---------------~~~~~~r~~i~~v~Q~~--~lf~~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~ 914 (1171)
.+...+|+.||||||+| .+|..||++|+.+.. ....+++.+ .+.++++. .|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~--~gL~ 155 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKK-----RAAKYIEL--VGLD 155 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHH-----HHHHHHHH--cCCC
Confidence 13456788899999986 577789999997532 122222211 12233333 2453
Q ss_pred -hhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEE
Q 001055 915 -AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRI 991 (1171)
Q Consensus 915 -~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i 991 (1171)
...+....+||||||||++|||||+.+|++|||||||++||+.+...+++.|+++. .++|||+||||++.+.. ||||
T Consensus 156 ~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv 235 (305)
T PRK13651 156 ESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRT 235 (305)
T ss_pred hhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEE
Confidence 34566678899999999999999999999999999999999999999999998875 47899999999998866 9999
Q ss_pred EEEeCcEEEEecChhHHhhc
Q 001055 992 LLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 992 ~vl~~G~i~~~g~~~el~~~ 1011 (1171)
++|++|++++.|+++++.+.
T Consensus 236 ~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 236 IFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred EEEECCEEEEECCHHHHhcC
Confidence 99999999999999998754
No 193
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-40 Score=370.66 Aligned_cols=219 Identities=23% Similarity=0.432 Sum_probs=184.6
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCEecCC--CCh
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGL 857 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~-----p~~G~I~i~g~~i~~--~~~ 857 (1171)
..|+++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++.. .++
T Consensus 12 ~~l~i~nl~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~ 89 (269)
T PRK14259 12 IIISLQNVTISYGTF--EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP 89 (269)
T ss_pred ceEEEEeEEEEECCE--EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH
Confidence 459999999999753 69999999999999999999999999999999999987 689999999999853 455
Q ss_pred HHHhhheEEEcCCcccccccHHhhccCCCC---CC---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001055 858 MDLRKILGIIPQSPVLFSGTVRFNLDPFSE---HS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 931 (1171)
Q Consensus 858 ~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~---~~---~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqr 931 (1171)
..+|+.++|+||++.+|..|+++|+.+... .. ++++.++++.+++.. +++...+....+||||||||
T Consensus 90 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~qr 162 (269)
T PRK14259 90 VEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWD-------ECKDKLNESGYSLSGGQQQR 162 (269)
T ss_pred HHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcc-------hhhhhhCCCcccCCHHHHHH
Confidence 677888999999999998899999975321 11 122333344433321 23344566678899999999
Q ss_pred HHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeC-----------cEE
Q 001055 932 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDS-----------GRV 999 (1171)
Q Consensus 932 l~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~-----------G~i 999 (1171)
++|||||+.+|++|||||||++||+.+...+++.|+++..++|||++||+++.+.. ||++++|++ |++
T Consensus 163 l~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~ 242 (269)
T PRK14259 163 LCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYL 242 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceE
Confidence 99999999999999999999999999999999999988667899999999999877 999999996 679
Q ss_pred EEecChhHHhhcC
Q 001055 1000 LEYDTPEELLSNE 1012 (1171)
Q Consensus 1000 ~~~g~~~el~~~~ 1012 (1171)
++.|+++++...+
T Consensus 243 ~~~~~~~~~~~~~ 255 (269)
T PRK14259 243 VEFNETKKIFNSP 255 (269)
T ss_pred EEeCCHHHHHhCc
Confidence 9999999997643
No 194
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=8.3e-41 Score=367.01 Aligned_cols=215 Identities=29% Similarity=0.460 Sum_probs=182.8
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH-hhheE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKILG 865 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i~ 865 (1171)
++++||+++|++. ++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (232)
T cd03218 1 LRAENLSKRYGKR--KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIG 78 (232)
T ss_pred CeEEEEEEEeCCE--EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEE
Confidence 4789999999753 69999999999999999999999999999999999999999999999999887665553 56799
Q ss_pred EEcCCcccccc-cHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 941 (1171)
|+||++.+|.. |+++|+.+... ....+.. ..+.++++.+ |++...+....+||||||||++|||||+.+
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 151 (232)
T cd03218 79 YLPQEASIFRKLTVEENILAVLEIRGLSKKERE-----EKLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALATN 151 (232)
T ss_pred EecCCccccccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999998876 99999964211 1111111 1234455543 566666777789999999999999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
|++|||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 152 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 152 PKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 99999999999999999999999998875 47899999999998877 99999999999999999988764
No 195
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=9.1e-41 Score=380.23 Aligned_cols=216 Identities=29% Similarity=0.443 Sum_probs=182.7
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.|+++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ....|+.+|
T Consensus 4 ~i~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGDK--VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCCe--EEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEE
Confidence 48999999999753 699999999999999999999999999999999999999999999999998653 355688899
Q ss_pred EEcCCccccc-ccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001055 866 IIPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 866 ~v~Q~~~lf~-~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 941 (1171)
|+||++.++. .|+++|+.++. .....+..+. +.++++. .++....+....+||||||||++|||||+.+
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~ll~~--~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 153 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAV-----IPSLLEF--ARLESKADVRVALLSGGMKRRLTLARALIND 153 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHH--CCChhHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 9999998885 59999996421 1222222111 2233333 2455555666678999999999999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
|++|||||||+|||+.+...+++.|+++. .++|||++||+++++.. ||+|++|++|++++.|+++++...
T Consensus 154 p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 154 PQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999999999999875 47899999999999987 999999999999999999998754
No 196
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-40 Score=370.15 Aligned_cols=218 Identities=28% Similarity=0.418 Sum_probs=182.8
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEecC--CCChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIA--KFGLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-----~~G~I~i~g~~i~--~~~~~ 858 (1171)
.++++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++. ..+..
T Consensus 4 ~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (253)
T PRK14267 4 AIETVNLRVYYGSN--HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPI 81 (253)
T ss_pred eEEEEeEEEEeCCe--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChH
Confidence 38999999999753 699999999999999999999999999999999999987 4999999999986 34555
Q ss_pred HHhhheEEEcCCcccccc-cHHhhccCCC---CC--CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhH
Q 001055 859 DLRKILGIIPQSPVLFSG-TVRFNLDPFS---EH--SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 928 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~-tv~~nl~~~~---~~--~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGq 928 (1171)
.+|++++|+||++.+|.. |+.+|+.+.. .. .. +.+.++++..++.+. +....+....+|||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~G~ 154 (253)
T PRK14267 82 EVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDE-------VKDRLNDYPSNLSGGQ 154 (253)
T ss_pred HHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccc-------hhhhhccChhhCCHHH
Confidence 678899999999999865 9999996421 11 11 123333333333211 1233456677899999
Q ss_pred HHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhH
Q 001055 929 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 1007 (1171)
Q Consensus 929 kqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~e 1007 (1171)
|||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 155 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 234 (253)
T PRK14267 155 RQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRK 234 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998767999999999999876 99999999999999999999
Q ss_pred HhhcC
Q 001055 1008 LLSNE 1012 (1171)
Q Consensus 1008 l~~~~ 1012 (1171)
+.+..
T Consensus 235 ~~~~~ 239 (253)
T PRK14267 235 VFENP 239 (253)
T ss_pred HHhCC
Confidence 87543
No 197
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-40 Score=370.63 Aligned_cols=220 Identities=25% Similarity=0.425 Sum_probs=184.8
Q ss_pred CccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEecCC--CC
Q 001055 784 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FG 856 (1171)
Q Consensus 784 ~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-----~~G~I~i~g~~i~~--~~ 856 (1171)
.+.|+++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++.. .+
T Consensus 17 ~~~l~~~nl~~~~~~~--~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~ 94 (267)
T PRK14235 17 EIKMRARDVSVFYGEK--QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94 (267)
T ss_pred CceEEEEeEEEEECCE--EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccc
Confidence 3469999999999753 699999999999999999999999999999999999975 89999999999864 34
Q ss_pred hHHHhhheEEEcCCcccccccHHhhccCCC---CC--C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChh
Q 001055 857 LMDLRKILGIIPQSPVLFSGTVRFNLDPFS---EH--S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVG 927 (1171)
Q Consensus 857 ~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~--~----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgG 927 (1171)
...+|+.++|+||++.+|..|+.+|+.+.. .. . .+++.++++..++.+.+ ....+..+.+||||
T Consensus 95 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG 167 (267)
T PRK14235 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEV-------KDRLHEPGTGLSGG 167 (267)
T ss_pred hHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhh-------hHHhhCCcccCCHH
Confidence 556788899999999999889999996421 11 1 12234444444443221 12345567789999
Q ss_pred HHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChh
Q 001055 928 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPE 1006 (1171)
Q Consensus 928 qkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~ 1006 (1171)
||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|||++||+++.+.. ||++++|++|++++.|+++
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 247 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTE 247 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988667899999999999976 9999999999999999999
Q ss_pred HHhhcC
Q 001055 1007 ELLSNE 1012 (1171)
Q Consensus 1007 el~~~~ 1012 (1171)
++....
T Consensus 248 ~~~~~~ 253 (267)
T PRK14235 248 KMFTNP 253 (267)
T ss_pred HHHhCC
Confidence 987543
No 198
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-41 Score=352.24 Aligned_cols=220 Identities=27% Similarity=0.443 Sum_probs=192.3
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH-hhheE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKILG 865 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i~ 865 (1171)
+++++++++|++- .+++||||++++||++||+|||||||||++++|+|+|+|++|+|.++|.||..++++.. |..|+
T Consensus 5 L~v~~l~k~FGGl--~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 5 LEVRGLSKRFGGL--TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred eeeccceeecCCE--EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 7899999999864 69999999999999999999999999999999999999999999999999999999886 55699
Q ss_pred EEcCCcccccc-cHHhhccCCCC------------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFSE------------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 932 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~~------------~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl 932 (1171)
--+|.+.+|++ ||.||+..... ....+-.++.+ .+.++++. .|+....++...+||+|||+||
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e--~A~~~Le~--vgL~~~a~~~A~~LsyG~qR~L 158 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARE--RARELLEF--VGLGELADRPAGNLSYGQQRRL 158 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHH--HHHHHHHH--cCCchhhcchhhcCChhHhHHH
Confidence 99999999976 99999853210 00011122222 24455665 4888888888999999999999
Q ss_pred HHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 933 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 933 ~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
.|||||+.+|++|+||||.+||.+.....+.+.|+++.+ +.|+++|.|||+.+.. ||||+||+.|+++++|+|+|+.
T Consensus 159 EIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV~ 238 (250)
T COG0411 159 EIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVR 238 (250)
T ss_pred HHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHHh
Confidence 999999999999999999999999999999999999885 4899999999999988 9999999999999999999998
Q ss_pred hcC
Q 001055 1010 SNE 1012 (1171)
Q Consensus 1010 ~~~ 1012 (1171)
+++
T Consensus 239 ~dp 241 (250)
T COG0411 239 NNP 241 (250)
T ss_pred cCH
Confidence 764
No 199
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=8e-41 Score=359.85 Aligned_cols=198 Identities=26% Similarity=0.447 Sum_probs=168.0
Q ss_pred EEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEE
Q 001055 788 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 867 (1171)
Q Consensus 788 ~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 867 (1171)
+++|++++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...+++++|+
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 367999999752 369999999999999999999999999999999999999999999999998853 4567789999
Q ss_pred cCCc--ccccccHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 868 PQSP--VLFSGTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 868 ~Q~~--~lf~~tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
||++ .++..|+++|+.+... ....++.++++..++.+ ..+.....||||||||++|||||+.+|
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYA-----------LKERHPLSLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCch-----------hcCCCchhCCHHHHHHHHHHHHHHhCC
Confidence 9998 3567899999975321 11234455555544443 344455689999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEE
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVL 1000 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~ 1000 (1171)
++|||||||++||+.+.+.+++.|+++. +++|+|++||+++.+.. ||++++|++|+++
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 146 DLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999874 57899999999999986 9999999999975
No 200
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-38 Score=341.79 Aligned_cols=460 Identities=19% Similarity=0.239 Sum_probs=304.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 001055 516 VLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFV 595 (1171)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~ 595 (1171)
.+.+.+........+...-.++|.++..+++..|+.-+++...++++.++++|+..|.- -...++.+......++.+..
T Consensus 62 ~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf-~~s~lp~~~qa~il~l~s~a 140 (546)
T COG4615 62 MVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISF-AFSRLPELVQAIILTLGSAA 140 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceee-hHhhhHHHHHHHHHHHHHHH
Confidence 34445566667778888999999999999999999999999999999999999999872 22334445555444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHH--HHHHHHH----
Q 001055 596 LIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDR--MADINGK---- 669 (1171)
Q Consensus 596 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~--~~~~~~~---- 669 (1171)
.++++++.+..+.+..+++.+....+.+....+.-+...+....+...++..+.|.+.++..+...+ ..+.+..
T Consensus 141 YLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~ 220 (546)
T COG4615 141 YLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQE 220 (546)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHH
Confidence 5556655444333333222222222222222222233344556678889999999999887654332 2222211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 670 SMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAE 749 (1171)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~ 749 (1171)
..+.....+........|..+.+..+.++..|+. +......++ .+.++ +...+.+..++.++........
T Consensus 221 ~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~la----l~~~w~st~---~a~ti---vlvlLflr~pL~s~vgilP~l~ 290 (546)
T COG4615 221 YRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLA----LSLGWASTN---VAATI---VLVLLFLRTPLLSAVGILPTLL 290 (546)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH----Hhhccchhh---HHHHH---HHHHHHHhhHHHHHHhhhhHHH
Confidence 1111122222222233444443333222222222 211221111 11111 2222233344444455555566
Q ss_pred HHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHH
Q 001055 750 NSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSS 829 (1171)
Q Consensus 750 ~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKST 829 (1171)
.+..+.+++.++-..|.... .....+.+.| ..|+++||.|.|.+.. --+..||++|++||+|-|+|.|||||||
T Consensus 291 ~AqvA~~kiakle~~~~~a~--~~~~q~~p~~---~~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFliG~NGsGKST 364 (546)
T COG4615 291 TAQVAFNKIAKLELAPYKAD--FPRPQAFPDW---KTLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGGNGSGKST 364 (546)
T ss_pred HHHHHHHHHHHhhcCCcccc--CCCCCcCCcc---cceeeeeeeeccCccc-ceecceeeEEecCcEEEEECCCCCcHHH
Confidence 77788888887754332211 1112222334 3599999999997643 3578999999999999999999999999
Q ss_pred HHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHc
Q 001055 830 MLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRN 909 (1171)
Q Consensus 830 Ll~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~l 909 (1171)
++++|+|+++|++|+|++||.+++..+++++|+-++-|+-|-.+|+.++- +-+..+++.+..-+++..+.....-
T Consensus 365 ~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~----~e~~as~q~i~~~LqrLel~~ktsl- 439 (546)
T COG4615 365 LAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLG----PEGKASPQLIEKWLQRLELAHKTSL- 439 (546)
T ss_pred HHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhC----CccCCChHHHHHHHHHHHHhhhhcc-
Confidence 99999999999999999999999999999999999999999999986542 1112345555544544333322111
Q ss_pred cCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh
Q 001055 910 SLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID 987 (1171)
Q Consensus 910 p~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~ 987 (1171)
.+|- -....||-|||+||++--|++.+.||+++||=-+.-||.-++.+...+.-.. .|+||+.||||-.....
T Consensus 440 ~d~~-----fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ 514 (546)
T COG4615 440 NDGR-----FSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIH 514 (546)
T ss_pred cCCc-----ccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhh
Confidence 1110 0123699999999999999999999999999999999999999888765544 48999999999999999
Q ss_pred cCEEEEEeCcEEEEe
Q 001055 988 CDRILLLDSGRVLEY 1002 (1171)
Q Consensus 988 ~d~i~vl~~G~i~~~ 1002 (1171)
|||++.|.+|+++|.
T Consensus 515 ADrll~~~~G~~~e~ 529 (546)
T COG4615 515 ADRLLEMRNGQLSEL 529 (546)
T ss_pred HHHHHHHhcCceeec
Confidence 999999999999986
No 201
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-40 Score=374.25 Aligned_cols=217 Identities=29% Similarity=0.513 Sum_probs=182.4
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecC--CCChHHHhhh
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA--KFGLMDLRKI 863 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~--~~~~~~~r~~ 863 (1171)
.|+++||+++|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+.
T Consensus 5 ~l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSDG-THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 38999999999632 36999999999999999999999999999999999999999999999999984 2345567889
Q ss_pred eEEEcCCc--ccccccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 864 LGIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 864 i~~v~Q~~--~lf~~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
+||+||++ .+|..|+++|+.+.. ..+..+..+. +.+.++. .|+....+....+||||||||++|||||
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~--~gL~~~~~~~~~~LS~G~~qrl~laraL 156 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR-----VDNALKR--TGIEHLKDKPTHCLSFGQKKRVAIAGVL 156 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHH-----HHHHHHH--CCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 99999998 467889999996421 1122221111 1223333 2444555667789999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
+.+|++|||||||++||+.+...+.+.|+++.+ ++|||++||+++.+.. |||+++|++|++++.|+++++.+
T Consensus 157 ~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 157 VMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999998764 7899999999999976 99999999999999999999875
No 202
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.2e-40 Score=359.55 Aligned_cols=202 Identities=27% Similarity=0.429 Sum_probs=173.6
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ..+++.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~ 76 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGA 76 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEE
Confidence 478999999964 3799999999999999999999999999999999999999999999999988654 456778999
Q ss_pred EcCCccccc-ccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 867 IPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 867 v~Q~~~lf~-~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
+||++.+|. .|+++|+.++. ...++++.++++..++.+. .+.....||||||||++||||++.+|
T Consensus 77 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la~al~~~p 145 (208)
T cd03268 77 LIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDS-----------AKKKVKGFSLGMKQRLGIALALLGNP 145 (208)
T ss_pred ecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHH-----------HhhhHhhCCHHHHHHHHHHHHHhcCC
Confidence 999998774 69999996432 1234445555565555443 33445689999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEec
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
++|||||||++||+.+.+.+++.|++.. .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 146 DLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999875 47899999999999976 9999999999998765
No 203
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=8.1e-41 Score=363.50 Aligned_cols=206 Identities=28% Similarity=0.407 Sum_probs=172.3
Q ss_pred EEEEeeEEEeCCCC--CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH----H
Q 001055 787 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD----L 860 (1171)
Q Consensus 787 i~~~~vs~~y~~~~--~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~----~ 860 (1171)
|+++||+++|++.. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...++.. .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999997521 36999999999999999999999999999999999999999999999999988766432 3
Q ss_pred hhheEEEcCCcccccc-cHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001055 861 RKILGIIPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 936 (1171)
Q Consensus 861 r~~i~~v~Q~~~lf~~-tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 936 (1171)
++.++|+||++.+|.. |+++|+.+... ....+. ...+.++++.+ |++...+....+||||||||++|||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~ 153 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKER-----RERAEELLERV--GLGDRLNHYPSELSGGQQQRVAIAR 153 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHH-----HHHHHHHHHHc--CCchhhhcChhhcCHHHHHHHHHHH
Confidence 5679999999998876 99999975321 111111 11233444443 5555566677889999999999999
Q ss_pred HhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhhcCEEEEEeCcEE
Q 001055 937 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRV 999 (1171)
Q Consensus 937 all~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i 999 (1171)
||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|||+|||+++.+..||++++|++|++
T Consensus 154 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 154 ALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999999999999999999998764 7899999999999878999999999974
No 204
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-40 Score=373.20 Aligned_cols=213 Identities=25% Similarity=0.452 Sum_probs=182.6
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++||+++|++. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 4 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 4 IETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred EEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 8899999999643 259999999999999999999999999999999999999999999999999987777778889999
Q ss_pred EcCCc--ccccccHHhhccCCC---CCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001055 867 IPQSP--VLFSGTVRFNLDPFS---EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 937 (1171)
Q Consensus 867 v~Q~~--~lf~~tv~~nl~~~~---~~~~~----~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 937 (1171)
+||++ .+|..|+.+|+.+.. ....+ .+.++++.. |+..........||||||||++||||
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~Gq~qrl~lara 151 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHML-----------GLEELRDRVPHHLSGGEKKRVAIAGV 151 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHC-----------CChhHhcCCcccCCHHHHHHHHHHHH
Confidence 99998 367789999996421 12222 233333333 44444455567899999999999999
Q ss_pred hccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 938 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 938 ll~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
|+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|||++||+++++.. ||||++|++|++++.|+++++++.
T Consensus 152 L~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 152 IAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 9999999999999999999999999999998753 7899999999999865 999999999999999999999753
No 205
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1.6e-40 Score=365.44 Aligned_cols=215 Identities=28% Similarity=0.443 Sum_probs=183.3
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++|++++|++. ++|+|+||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++...+.. .++.++|
T Consensus 2 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~-~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGAR--RALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRA-ALARLGV 78 (236)
T ss_pred EEEEeeEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChh-hhhhEEE
Confidence 7899999999643 699999999999999999999999999999999999999999999999998766543 3458999
Q ss_pred EcCCcccc-cccHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 867 IPQSPVLF-SGTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 867 v~Q~~~lf-~~tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
+||++.++ ..|+++|+.+... ....+.. ..+.++++.+ |++...+....+||||||||++|||||+++|
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~p 151 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEAR-----ERIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHRP 151 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999875 5699999964321 1111111 1234455543 6666667777899999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhc
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
+||||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+..||++++|++|++++.|+++++.+.
T Consensus 152 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 152 ALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 9999999999999999999999999875 37899999999999978999999999999999999988764
No 206
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.2e-40 Score=365.89 Aligned_cols=220 Identities=21% Similarity=0.367 Sum_probs=185.1
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH-hhheE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKILG 865 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i~ 865 (1171)
|+++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.++
T Consensus 3 i~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 3 LYLEGLSVSFDGF--KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred EEEEeeEEEcCCe--EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 7899999999753 69999999999999999999999999999999999999999999999999887766543 45699
Q ss_pred EEcCCcccccc-cHHhhccCCCCCCHH---H---HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFSEHSDA---D---LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~~~~~~---~---i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
|+||++.+|.. |+++|+.+....... . .........+.++++.+ |++...+....+||||||||++||||+
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~laral 158 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGMLL 158 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 99999999976 999999753211000 0 00001112234455543 566666777789999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
+.+|++|||||||++||+.+...+++.|+++..++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 159 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 159 MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 9999999999999999999999999999998777999999999999987 99999999999999999998864
No 207
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=2.2e-40 Score=379.18 Aligned_cols=226 Identities=23% Similarity=0.388 Sum_probs=186.7
Q ss_pred cEEEEeeEEEeCCC-----------CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCC
Q 001055 786 SIKFEDVVLRYRPE-----------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK 854 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~-----------~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~ 854 (1171)
.++++|++++|+.. ..++++||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++..
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 48999999999631 1369999999999999999999999999999999999999999999999999988
Q ss_pred CChHH---HhhheEEEcCCc--cccc-ccHHhhccC----CC-CCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCC
Q 001055 855 FGLMD---LRKILGIIPQSP--VLFS-GTVRFNLDP----FS-EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGE 922 (1171)
Q Consensus 855 ~~~~~---~r~~i~~v~Q~~--~lf~-~tv~~nl~~----~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~ 922 (1171)
.+... +|++|+||||+| .++. .||.+|+.. +. ..+.++..+. +.+.++.+ |+. ...+....
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~-----~~~~l~~v--gl~~~~~~~~p~ 160 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDR-----VKAMMLKV--GLLPNLINRYPH 160 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHH-----HHHHHHHc--CCChHHhcCCcc
Confidence 77543 567899999998 4664 599999852 11 1232222211 22333332 342 34466678
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEE
Q 001055 923 NFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRV 999 (1171)
Q Consensus 923 ~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i 999 (1171)
+||||||||++|||||+.+|++||+||||++||+.++..+.+.|+++.+ +.|+|+||||++.+.. ||||++|.+|+|
T Consensus 161 ~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~i 240 (331)
T PRK15079 161 EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHA 240 (331)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999998753 7899999999999987 999999999999
Q ss_pred EEecChhHHhhcCCChHHH
Q 001055 1000 LEYDTPEELLSNEGSSFSK 1018 (1171)
Q Consensus 1000 ~~~g~~~el~~~~~~~~~~ 1018 (1171)
++.|+++++.++....|.+
T Consensus 241 ve~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 241 VELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred EEEcCHHHHHcCCCCHHHH
Confidence 9999999998766555554
No 208
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-40 Score=385.87 Aligned_cols=221 Identities=22% Similarity=0.403 Sum_probs=185.8
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...++ .++.||
T Consensus 19 ~l~l~~v~~~~~~~--~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig 94 (377)
T PRK11607 19 LLEIRNLTKSFDGQ--HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPIN 94 (377)
T ss_pred eEEEEeEEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCEE
Confidence 59999999999753 69999999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEcCCcccccc-cHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 941 (1171)
||||++.+|.. ||.+|+.+.. .....++.+ .+.+.++. .|+....+....+|||||||||+|||||+++
T Consensus 95 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~-----~v~~~l~~--l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~ 167 (377)
T PRK11607 95 MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIAS-----RVNEMLGL--VHMQEFAKRKPHQLSGGQRQRVALARSLAKR 167 (377)
T ss_pred EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHH--cCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999976 9999997532 112222211 12233333 2444555566678999999999999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCChHH
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 1017 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 1017 (1171)
|++|||||||++||+.++..+.+.|+++. .+.|+|+||||++++.. ||||++|++|++++.|+++++..++...|.
T Consensus 168 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~~~~~ 246 (377)
T PRK11607 168 PKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYS 246 (377)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCccHHH
Confidence 99999999999999999999998887764 37899999999999876 999999999999999999999877654443
No 209
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-40 Score=360.32 Aligned_cols=202 Identities=27% Similarity=0.446 Sum_probs=173.0
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++||+++|++. ++++|+||+|++| ++||+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++|
T Consensus 1 i~~~~~~~~~~~~--~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGKK--RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECCE--EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEE
Confidence 4789999999653 6999999999999 99999999999999999999999999999999999987665 667889999
Q ss_pred EcCCcccccc-cHHhhccCCC---CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 867 IPQSPVLFSG-TVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~---~~~----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
+||++.+|.. |+++|+.+.. ... .+++.++++..++. ...+....+||||||||++|||||
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLG-----------DRAKKKIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCH-----------HHHhCchhhCCHHHHHHHHHHHHH
Confidence 9999998875 9999986421 111 12233444444443 333445578999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEec
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
+.+|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. |||+++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999998777999999999999976 9999999999998765
No 210
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-40 Score=364.04 Aligned_cols=212 Identities=25% Similarity=0.398 Sum_probs=177.2
Q ss_pred cEEEEeeEEEeCCCC--CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---H
Q 001055 786 SIKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---L 860 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~--~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~ 860 (1171)
.++++||+++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 389999999996432 36999999999999999999999999999999999999999999999999998877644 3
Q ss_pred h-hheEEEcCCcccccc-cHHhhccCC---CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001055 861 R-KILGIIPQSPVLFSG-TVRFNLDPF---SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 935 (1171)
Q Consensus 861 r-~~i~~v~Q~~~lf~~-tv~~nl~~~---~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 935 (1171)
| +.++|+||++.+|.. |+++|+.+. ......+.. ..+.+.++. .|++...+....+||||||||++||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~--~gl~~~~~~~~~~LSgG~~qrl~la 157 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEIN-----SRALEMLAA--VGLEHRANHRPSELSGGERQRVAIA 157 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHH--cCCchhhhCChhhCCHHHHHHHHHH
Confidence 3 579999999988865 999998642 111111111 112334444 2555555666778999999999999
Q ss_pred HHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhhcCEEEEEeCcEEEEecC
Q 001055 936 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDT 1004 (1171)
Q Consensus 936 rall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~ 1004 (1171)
||++.+|+||||||||++||+.+...+.+.|++.. .++|||+|||+++++..+|++++|++|+|++.|.
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 158 RALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999874 3789999999999998889999999999998764
No 211
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-40 Score=373.14 Aligned_cols=213 Identities=30% Similarity=0.412 Sum_probs=179.3
Q ss_pred EEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH----hhh
Q 001055 788 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL----RKI 863 (1171)
Q Consensus 788 ~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~----r~~ 863 (1171)
.++|+++.|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +++
T Consensus 26 ~~~~~~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQT--VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCCc--eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 567888998754 69999999999999999999999999999999999999999999999999887665443 357
Q ss_pred eEEEcCCccccc-ccHHhhccCCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001055 864 LGIIPQSPVLFS-GTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 935 (1171)
Q Consensus 864 i~~v~Q~~~lf~-~tv~~nl~~~~---~~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 935 (1171)
++|+||++.+|. .|+++|+.+.. .... +++.+.++.. |++...+....+||||||||++||
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~Gq~qrv~lA 172 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELV-----------GLEGWEHKYPDELSGGMQQRVGLA 172 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCHhHhhCCcccCCHHHHHHHHHH
Confidence 999999998885 59999996421 1111 2233333333 444444555678999999999999
Q ss_pred HHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcC
Q 001055 936 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012 (1171)
Q Consensus 936 rall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~ 1012 (1171)
|||+++|+||||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+..
T Consensus 173 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 252 (269)
T cd03294 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNP 252 (269)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCc
Confidence 999999999999999999999999999999998753 7899999999999876 9999999999999999999998654
Q ss_pred C
Q 001055 1013 G 1013 (1171)
Q Consensus 1013 ~ 1013 (1171)
.
T Consensus 253 ~ 253 (269)
T cd03294 253 A 253 (269)
T ss_pred C
Confidence 4
No 212
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-40 Score=385.70 Aligned_cols=208 Identities=32% Similarity=0.450 Sum_probs=173.8
Q ss_pred cceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH----hhheEEEcCCcccccc-c
Q 001055 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL----RKILGIIPQSPVLFSG-T 877 (1171)
Q Consensus 803 ~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~----r~~i~~v~Q~~~lf~~-t 877 (1171)
+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +++++|+||++.+|.. |
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~T 122 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMT 122 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCC
Confidence 7999999999999999999999999999999999999999999999999988776553 3579999999999864 9
Q ss_pred HHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCC
Q 001055 878 VRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAV 954 (1171)
Q Consensus 878 v~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~L 954 (1171)
+++|+.+.. .....+.. ..+.++++. .|++...+....+||||||||++|||||+.+|+||||||||++|
T Consensus 123 v~enl~~~~~~~~~~~~~~~-----~~~~e~L~~--~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~L 195 (400)
T PRK10070 123 VLDNTAFGMELAGINAEERR-----EKALDALRQ--VGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSAL 195 (400)
T ss_pred HHHHHHHHHHhcCCCHHHHH-----HHHHHHHHH--cCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccC
Confidence 999997431 11111111 112233333 24444555566789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCChHH
Q 001055 955 DVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 1017 (1171)
Q Consensus 955 D~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 1017 (1171)
|+.+++.+++.|.++. .++|+|+|||+++++.. ||+|++|++|++++.|++++++..+...|.
T Consensus 196 D~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~v 261 (400)
T PRK10070 196 DPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYV 261 (400)
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHHH
Confidence 9999999999999874 37899999999999876 999999999999999999999876544443
No 213
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.4e-40 Score=361.60 Aligned_cols=209 Identities=31% Similarity=0.521 Sum_probs=174.9
Q ss_pred EEEEeeEEEeCCCC--CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhhe
Q 001055 787 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 864 (1171)
Q Consensus 787 i~~~~vs~~y~~~~--~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 864 (1171)
++++||+++|++.. +++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. ....+|+.+
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 78999999997531 169999999999999999999999999999999999999999999999999875 445678899
Q ss_pred EEEcCCcccccc-cHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 865 GIIPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 865 ~~v~Q~~~lf~~-tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
+|+||++.+|.. |+++|+.+.. .....+.. ..+.+.++.+ |++...+....+||||||||++|||||+.
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~ 153 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELT-----ARLEELADRL--GMEELLDRRVGGFSTGMRQKVAIARALVH 153 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCHHHHhhhhhhcCHHHHHHHHHHHHHhc
Confidence 999999998875 9999986421 11111111 1123334432 45555566677899999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEec
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++++.. ||++++|++|++++.|
T Consensus 154 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 154 DPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999999875 47899999999999877 9999999999998754
No 214
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-40 Score=367.56 Aligned_cols=219 Identities=24% Similarity=0.395 Sum_probs=183.0
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--C---CCceEEECCEecCC--CChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE--L---ERGRILIDGFDIAK--FGLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~--p---~~G~I~i~g~~i~~--~~~~ 858 (1171)
.|+++|++++|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.++|.++.. .+..
T Consensus 12 ~l~i~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 12 VYQINGMNLWYGQH--HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred eEEEeeEEEEECCe--eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 48999999999753 69999999999999999999999999999999999997 3 58999999999863 3445
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCCC----CCHHH----HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFSE----HSDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~----~~~~~----i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
.+|+.++|+||++.+|..|+++|+.+... ..+.+ +.++++..++.+.+ ....+....+|||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LS~Gq~q 162 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV-------KDRLHTQALSLSGGQQQ 162 (259)
T ss_pred HHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhhhhCCcccCCHHHHH
Confidence 67888999999999998899999964321 11121 22233333332211 23345667789999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
|++|||||+++|+||||||||++||+.+...+++.|+++..++|+|+|||+++.+.. |||+++|++|++++.|+++++.
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999998777999999999999876 9999999999999999999987
Q ss_pred hcCC
Q 001055 1010 SNEG 1013 (1171)
Q Consensus 1010 ~~~~ 1013 (1171)
.+..
T Consensus 243 ~~~~ 246 (259)
T PRK14274 243 SNPD 246 (259)
T ss_pred hCCC
Confidence 6543
No 215
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=5.2e-40 Score=364.83 Aligned_cols=217 Identities=27% Similarity=0.459 Sum_probs=183.2
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCC--------hH
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG--------LM 858 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~--------~~ 858 (1171)
++++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ..
T Consensus 4 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 4 IEVKNLVKKFHGQ--TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred EEEeceEEEECCe--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 8999999999743 6999999999999999999999999999999999999999999999999986532 24
Q ss_pred HHhhheEEEcCCccccc-ccHHhhccCC----CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001055 859 DLRKILGIIPQSPVLFS-GTVRFNLDPF----SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 933 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~-~tv~~nl~~~----~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~ 933 (1171)
.+|+.++|+||++.+|. .|+++|+.+. ......+.. ..+.+.++.+ |++...+....+||||||||++
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~Gq~qrv~ 154 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEAT-----ARARELLAKV--GLAGKETSYPRRLSGGQQQRVA 154 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCcchhhCChhhCChHHHHHHH
Confidence 56788999999998886 5999999642 111111111 1123444443 5555566777899999999999
Q ss_pred HHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 934 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 934 lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
|||||+.+|+||||||||++||+.+++.+.+.|+++.. ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 155 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 234 (250)
T PRK11264 155 IARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFAD 234 (250)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999998754 7899999999999977 999999999999999999998754
Q ss_pred C
Q 001055 1012 E 1012 (1171)
Q Consensus 1012 ~ 1012 (1171)
.
T Consensus 235 ~ 235 (250)
T PRK11264 235 P 235 (250)
T ss_pred C
Confidence 3
No 216
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=2e-40 Score=371.32 Aligned_cols=217 Identities=20% Similarity=0.326 Sum_probs=182.3
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChH---HHhh
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM---DLRK 862 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~---~~r~ 862 (1171)
.|+++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+++
T Consensus 7 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 7 LVDMRGVSFTRGNR--CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred eEEEeCeEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 48999999999643 699999999999999999999999999999999999999999999999998766543 3467
Q ss_pred heEEEcCCcccccc-cHHhhccCC----CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001055 863 ILGIIPQSPVLFSG-TVRFNLDPF----SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 937 (1171)
Q Consensus 863 ~i~~v~Q~~~lf~~-tv~~nl~~~----~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 937 (1171)
.++|+||++.+|.. |+.+|+.+. ......+.. ..+.+.++. .|+....+....+||||||||++||||
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~--~gl~~~~~~~~~~LSgGq~qrv~lara 157 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLH-----STVMMKLEA--VGLRGAAKLMPSELSGGMARRAALARA 157 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHH-----HHHHHHHHH--cCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 89999999999876 999998642 111111111 112233333 245555556667899999999999999
Q ss_pred hccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 938 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 938 ll~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
|+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|||+|||+++++.. ||+|++|++|++++.|+++++.+.
T Consensus 158 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (269)
T PRK11831 158 IALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAN 234 (269)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999998753 6899999999999877 999999999999999999998764
No 217
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-40 Score=365.27 Aligned_cols=215 Identities=26% Similarity=0.437 Sum_probs=184.4
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH-HhhheE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRKILG 865 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~-~r~~i~ 865 (1171)
++++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...++.. .|+.++
T Consensus 4 l~~~~l~~~~~~~--~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (241)
T PRK10895 4 LTAKNLAKAYKGR--RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81 (241)
T ss_pred EEEeCcEEEeCCE--EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence 8899999999753 6999999999999999999999999999999999999999999999999998776544 467899
Q ss_pred EEcCCcccccc-cHHhhccCCCCC----CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFSEH----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~~~----~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
|+||++.+|.. |+++|+.+.... ...+ ....+.++++.+ |++...+.....||||||||++|||||+.
T Consensus 82 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~ 154 (241)
T PRK10895 82 YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQ-----REDRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARALAA 154 (241)
T ss_pred EeccCCcccccCcHHHHHhhhhhcccccCHHH-----HHHHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHHhc
Confidence 99999988875 999999753211 1111 112334555554 56666677778999999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
+|++|||||||++||+.+...+++.|+++. +++|+|++||+++.+.. ||++++|++|++++.|++++++.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 155 NPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 999999999999999999999999998865 47899999999988876 99999999999999999998864
No 218
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-40 Score=370.90 Aligned_cols=212 Identities=25% Similarity=0.382 Sum_probs=181.8
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 11 ~l~i~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 11 TFALRNVSFRVPGR--TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred eEEEeeEEEEECCE--EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 49999999999643 6999999999999999999999999999999999999999999999999998777778888999
Q ss_pred EEcCCcccccc-cHHhhccCCCC--------C---CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFSE--------H---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 933 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~~--------~---~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~ 933 (1171)
|+||++.++.. |+.+|+.+... . .++++.++++.++ ++...+....+||||||||++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgG~~qrv~ 157 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVG-----------LKPLAHRLVDSLSGGERQRAW 157 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcC-----------CHHHhcCCcccCCHHHHHHHH
Confidence 99999877654 99999964211 0 1122334444443 333444555689999999999
Q ss_pred HHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 934 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 934 lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
|||||+.+|+||||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++++.. ||+|++|++|++++.|+++++..
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 158 IAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 99999999999999999999999999999999998753 7899999999999976 99999999999999999988764
No 219
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-40 Score=368.40 Aligned_cols=219 Identities=27% Similarity=0.415 Sum_probs=182.6
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEecCCCC--hH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKFG--LM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-----~~G~I~i~g~~i~~~~--~~ 858 (1171)
.++++|++++|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++...+ ..
T Consensus 12 ~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 12 QIKVENLNLWYGEK--QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred eEEEeeeEEEeCCe--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 49999999999643 699999999999999999999999999999999999985 7999999999986432 34
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCC---CCCHH----HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EHSDA----DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 931 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~~~~----~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqr 931 (1171)
.+|+.++|+||++.+|..|+++|+.+.. ..... .+.++++.+++.+ .+....+....+||||||||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LSgG~~qr 162 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWD-------ETSDRLKSPALSLSGGQQQR 162 (258)
T ss_pred HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc-------chhhhhcCChhhCCHHHHHH
Confidence 5678899999999988899999996421 11221 2233333333211 11233456677899999999
Q ss_pred HHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 932 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 932 l~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
|+|||||+.+|+||||||||++||+.+...+++.|+++.+++|||+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 163 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 242 (258)
T PRK14268 163 LCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFH 242 (258)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999988667999999999999876 99999999999999999999976
Q ss_pred cCC
Q 001055 1011 NEG 1013 (1171)
Q Consensus 1011 ~~~ 1013 (1171)
.+.
T Consensus 243 ~~~ 245 (258)
T PRK14268 243 NPR 245 (258)
T ss_pred CCC
Confidence 543
No 220
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-40 Score=370.15 Aligned_cols=217 Identities=28% Similarity=0.520 Sum_probs=182.4
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCC-hHHHhhheE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG-LMDLRKILG 865 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~-~~~~r~~i~ 865 (1171)
++++|++++|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.++
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 7899999999643 36999999999999999999999999999999999999999999999999997765 356778899
Q ss_pred EEcCCcc--cccccHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 866 IIPQSPV--LFSGTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 866 ~v~Q~~~--lf~~tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
|+||+|. ++..|+.+|+.+... .+..+..+ .+.+.++. .|++...+..+..||||||||++|||||+.
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~--~gl~~~~~~~~~~LS~G~~qrv~laral~~ 153 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRK-----RVDRALAE--IGLEKYRHRSPKTLSGGQGQCVALAGILTM 153 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHH-----HHHHHHHH--CCCHHHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 9999985 556799999975321 12111111 12233333 355555666678899999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhc
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
+|+||||||||++||+.++..+++.|+++. .++|||++||+++.+..||+|++|++|++++.|+++++...
T Consensus 154 ~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 154 EPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999998875 47899999999999977999999999999999999998653
No 221
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.7e-40 Score=363.61 Aligned_cols=216 Identities=26% Similarity=0.445 Sum_probs=183.7
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCC--hHHHhhhe
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG--LMDLRKIL 864 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~--~~~~r~~i 864 (1171)
++++|++++|++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.+
T Consensus 2 l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 79 (240)
T PRK09493 2 IEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEA 79 (240)
T ss_pred EEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhce
Confidence 789999999974 36999999999999999999999999999999999999999999999999987643 34567889
Q ss_pred EEEcCCccccc-ccHHhhccCCC----CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001055 865 GIIPQSPVLFS-GTVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 939 (1171)
Q Consensus 865 ~~v~Q~~~lf~-~tv~~nl~~~~----~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 939 (1171)
+|+||++.+|. .|+++|+.+.. .....+.. ..+.+.++. .|++...+.....||||||||++|||||+
T Consensus 80 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~--~gl~~~~~~~~~~LS~G~~qrv~la~al~ 152 (240)
T PRK09493 80 GMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAE-----KQARELLAK--VGLAERAHHYPSELSGGQQQRVAIARALA 152 (240)
T ss_pred EEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHH-----HHHHHHHHH--cCChHHHhcChhhcCHHHHHHHHHHHHHh
Confidence 99999998885 59999996421 11111111 123344554 36666667777899999999999999999
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 940 RRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 940 ~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
.+|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|+++++++.
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 153 VKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 9999999999999999999999999999875 47999999999999977 999999999999999999998754
No 222
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1.4e-40 Score=360.29 Aligned_cols=206 Identities=22% Similarity=0.384 Sum_probs=172.4
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++|++++|++. ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ++.++|
T Consensus 1 i~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~ 76 (213)
T cd03301 1 VELENVTKRFGNV--TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAM 76 (213)
T ss_pred CEEEeeEEEECCe--eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEE
Confidence 4789999999753 699999999999999999999999999999999999999999999999998765432 467999
Q ss_pred EcCCccccc-ccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 867 IPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 867 v~Q~~~lf~-~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
+||++.+|. .|+++|+.+.. .....+..+ .+.++++. .|++...+....+||||||||++|||||+.+|
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~--~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 149 (213)
T cd03301 77 VFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDE-----RVREVAEL--LQIEHLLDRKPKQLSGGQRQRVALGRAIVREP 149 (213)
T ss_pred EecChhhccCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHH--cCCHHHHhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999998885 59999996431 112221111 12233333 24555556666789999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEec
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 150 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 150 KVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999998753 7899999999999877 9999999999999876
No 223
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=3.6e-40 Score=366.38 Aligned_cols=217 Identities=29% Similarity=0.495 Sum_probs=182.1
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCC----------
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---------- 856 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~---------- 856 (1171)
|+++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 1 i~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGIL--TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCCe--eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 4789999999743 6999999999999999999999999999999999999999999999999986543
Q ss_pred ---hHHHhhheEEEcCCccccc-ccHHhhccCCC----CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhH
Q 001055 857 ---LMDLRKILGIIPQSPVLFS-GTVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 928 (1171)
Q Consensus 857 ---~~~~r~~i~~v~Q~~~lf~-~tv~~nl~~~~----~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGq 928 (1171)
...+|+.++|+||++.+|. .|+.+|+.+.. .....+.. ..+.++++.+ |++...+....+|||||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~ 151 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAE-----KRAMELLDMV--GLADKADHMPAQLSGGQ 151 (252)
T ss_pred hhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhHhhcChhhcCHHH
Confidence 2356788999999998885 69999996421 11111111 1233444443 55555666677899999
Q ss_pred HHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecCh
Q 001055 929 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 1005 (1171)
Q Consensus 929 kqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~ 1005 (1171)
|||++|||||+.+|++|||||||++||+.++..+.+.|++..+ +.|+|+|||+++.+.. ||++++|++|++++.|++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~ 231 (252)
T TIGR03005 152 QQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKP 231 (252)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999998753 7899999999999876 999999999999999999
Q ss_pred hHHhhcC
Q 001055 1006 EELLSNE 1012 (1171)
Q Consensus 1006 ~el~~~~ 1012 (1171)
+++.+..
T Consensus 232 ~~~~~~~ 238 (252)
T TIGR03005 232 DEIFRQP 238 (252)
T ss_pred HHHhcCC
Confidence 9987554
No 224
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-40 Score=369.11 Aligned_cols=219 Identities=27% Similarity=0.466 Sum_probs=184.3
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++|++++|++..+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 48999999999633347999999999999999999999999999999999999999999999999998777777888999
Q ss_pred EEcCCc--ccccccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 866 IIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 866 ~v~Q~~--~lf~~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
|+||++ .++..|+++|+.+.. ....++..+ .+.++++.+ |++...+....+||||||||++|||||+.
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~~ 159 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKD-----IIDDLAKKV--GMEDYLDKEPQNLSGGQKQRVAIASVLAL 159 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHhhCCcccCCHHHHHHHHHHHHHHc
Confidence 999998 345679999997521 122222111 123333332 45555566667899999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhc
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
+|++|||||||++||+.+.+.+++.|+++.+ ++|+|++||+++.+..||++++|++|++++.|+++++.+.
T Consensus 160 ~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 160 NPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999998753 4899999999999877999999999999999999888653
No 225
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-40 Score=371.68 Aligned_cols=215 Identities=27% Similarity=0.446 Sum_probs=184.0
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC---ceEEECCEecCCCChHHHhh
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER---GRILIDGFDIAKFGLMDLRK 862 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~---G~I~i~g~~i~~~~~~~~r~ 862 (1171)
.|+++|++++|++...++++|+||+|++||++||+||||||||||+++|+|+++|++ |+|.++|.++...+...+++
T Consensus 5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~ 84 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIRE 84 (282)
T ss_pred eEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHh
Confidence 599999999996533469999999999999999999999999999999999999998 89999999998777677888
Q ss_pred heEEEcCCcc--cccccHHhhccCCC---CCCHHH----HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001055 863 ILGIIPQSPV--LFSGTVRFNLDPFS---EHSDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 933 (1171)
Q Consensus 863 ~i~~v~Q~~~--lf~~tv~~nl~~~~---~~~~~~----i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~ 933 (1171)
++||+||++. ++..|+.+|+.+.. ..+.++ +.++++.+ |+....+....+||||||||++
T Consensus 85 ~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~-----------~L~~~~~~~~~~LS~G~~qrv~ 153 (282)
T PRK13640 85 KVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADV-----------GMLDYIDSEPANLSGGQKQRVA 153 (282)
T ss_pred heEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHC-----------CChhHhcCCcccCCHHHHHHHH
Confidence 9999999983 55779999997431 122222 33333333 4444455566789999999999
Q ss_pred HHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhc
Q 001055 934 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 934 lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
|||||+.+|++|||||||++||+.+...+.+.|+++.. ++|||++||+++.+..||++++|++|++++.|+++++...
T Consensus 154 laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 233 (282)
T PRK13640 154 IAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233 (282)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999998753 7899999999999977999999999999999999998753
No 226
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=2.9e-40 Score=347.20 Aligned_cols=178 Identities=33% Similarity=0.574 Sum_probs=164.1
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++|++++|++..+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+|+.++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 478999999975433699999999999999999999999999999999999999999999999988665 5567888999
Q ss_pred EcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 001055 867 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 946 (1171)
Q Consensus 867 v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLl 946 (1171)
+||++.+|+.|+++|+ ..+||||||||++||||++++|++||
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~~p~~ll 121 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQDAPIVL 121 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999988999886 35799999999999999999999999
Q ss_pred EecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEec
Q 001055 947 LDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 947 LDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g 1003 (1171)
|||||++||+.+.+.+++.|++..+++|+|++||+++.+..||++++|++|++++.|
T Consensus 122 lDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 122 LDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999887789999999999999889999999999998764
No 227
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-40 Score=364.57 Aligned_cols=219 Identities=29% Similarity=0.441 Sum_probs=182.9
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEecCC--CCh
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FGL 857 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-----~~G~I~i~g~~i~~--~~~ 857 (1171)
+.++++||+++|++. ++++|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 2 ~~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14240 2 GKISVKDLDLFYGDF--QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79 (250)
T ss_pred CeEEEEEEEEEECCc--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccch
Confidence 358999999999753 699999999999999999999999999999999999863 69999999999864 344
Q ss_pred HHHhhheEEEcCCcccccccHHhhccCCC---CC-C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHH
Q 001055 858 MDLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 929 (1171)
Q Consensus 858 ~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~-~----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqk 929 (1171)
..+|+.++|+||++.+|..|+++|+.+.. .. . ++.+.++++.+++.+ ++....+..+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~ 152 (250)
T PRK14240 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWD-------EVKDRLKKSALGLSGGQQ 152 (250)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCch-------hhHHHHhcCCCCCCHHHH
Confidence 56788899999999988889999996421 11 1 122333333333321 122344566788999999
Q ss_pred HHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHH
Q 001055 930 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1008 (1171)
Q Consensus 930 qrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 1008 (1171)
||++|||||+.+|++|||||||++||+.++..+.+.|+++.+++|||++||+++.+.. ||++++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 232 (250)
T PRK14240 153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998668899999999999877 999999999999999999998
Q ss_pred hhcC
Q 001055 1009 LSNE 1012 (1171)
Q Consensus 1009 ~~~~ 1012 (1171)
....
T Consensus 233 ~~~~ 236 (250)
T PRK14240 233 FTNP 236 (250)
T ss_pred HhCC
Confidence 7543
No 228
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=5.8e-40 Score=365.65 Aligned_cols=218 Identities=26% Similarity=0.387 Sum_probs=182.1
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCC---------
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF--------- 855 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~--------- 855 (1171)
+.++++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (257)
T PRK10619 4 NKLNVIDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV 81 (257)
T ss_pred ccEEEeeeEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence 459999999999753 699999999999999999999999999999999999999999999999988542
Q ss_pred ----ChHHHhhheEEEcCCcccccc-cHHhhccCCC----CCCHHHHHHHHHHhcHHHHHHHccCCcchhh-hcCCCCCC
Q 001055 856 ----GLMDLRKILGIIPQSPVLFSG-TVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQV-SEAGENFS 925 (1171)
Q Consensus 856 ----~~~~~r~~i~~v~Q~~~lf~~-tv~~nl~~~~----~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~-~~~~~~LS 925 (1171)
....+++.++|+||++.+|.. |+++|+.+.. .....+.. ..+.++++.+ |+.... +....+||
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~LS 154 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEAR-----ERAVKYLAKV--GIDERAQGKYPVHLS 154 (257)
T ss_pred ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHc--CCChhhhhCCcccCC
Confidence 123567889999999999875 9999986421 11111111 1123344443 444433 55667899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhh-cCEEEEEeCcEEEEec
Q 001055 926 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 926 gGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++++.. ||||++|++|++++.|
T Consensus 155 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~ 234 (257)
T PRK10619 155 GGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 234 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999999998754 7999999999999987 9999999999999999
Q ss_pred ChhHHhhc
Q 001055 1004 TPEELLSN 1011 (1171)
Q Consensus 1004 ~~~el~~~ 1011 (1171)
+++++...
T Consensus 235 ~~~~~~~~ 242 (257)
T PRK10619 235 APEQLFGN 242 (257)
T ss_pred CHHHhhhC
Confidence 99998754
No 229
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-40 Score=372.29 Aligned_cols=217 Identities=26% Similarity=0.446 Sum_probs=182.0
Q ss_pred EEEEeeEEEeCCCC---CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCC----ChHH
Q 001055 787 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF----GLMD 859 (1171)
Q Consensus 787 i~~~~vs~~y~~~~---~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~----~~~~ 859 (1171)
|+++||+++|++.. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... +...
T Consensus 3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13641 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82 (287)
T ss_pred EEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997421 3699999999999999999999999999999999999999999999999998643 2345
Q ss_pred HhhheEEEcCCc--ccccccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHH
Q 001055 860 LRKILGIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLS 933 (1171)
Q Consensus 860 ~r~~i~~v~Q~~--~lf~~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~LSgGqkqrl~ 933 (1171)
.++.|+|+||+| .+|..|+.+|+.+.. ....++.. ..+.++++.+ |++ ...+....+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrl~ 155 (287)
T PRK13641 83 LRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAK-----EKALKWLKKV--GLSEDLISKSPFELSGGQMRRVA 155 (287)
T ss_pred HHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCChhHhhCCcccCCHHHHHHHH
Confidence 677899999998 577789999996421 11222211 1133444443 564 3456677899999999999
Q ss_pred HHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 934 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 934 lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
|||||+.+|++|||||||++||+.+...+.+.|+++. .+.|||++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 156 laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 156 IAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999999999875 47899999999999876 99999999999999999999875
No 230
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-40 Score=362.42 Aligned_cols=217 Identities=28% Similarity=0.411 Sum_probs=180.6
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH-Hhhhe
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRKIL 864 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~-~r~~i 864 (1171)
.++++|++++|+. .++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 82 (237)
T PRK11614 5 MLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAV 82 (237)
T ss_pred EEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCE
Confidence 3899999999964 36999999999999999999999999999999999999999999999999998776554 56789
Q ss_pred EEEcCCcccccc-cHHhhccCCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 865 GIIPQSPVLFSG-TVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 865 ~~v~Q~~~lf~~-tv~~nl~~~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
+|+||++.+|.. |+++|+..... ....+..+. +.+.++.++ ++.........+||||||||++|||||+.+|
T Consensus 83 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 156 (237)
T PRK11614 83 AIVPEGRRVFSRMTVEENLAMGGFFAERDQFQER-----IKWVYELFP-RLHERRIQRAGTMSGGEQQMLAIGRALMSQP 156 (237)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccChhHHHHH-----HHHHHHHHH-HHHHHHhCchhhCCHHHHHHHHHHHHHHhCC
Confidence 999999998875 99999965211 111111111 122222221 1223334456789999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
+||||||||++||+.+.+.+.+.|+++. +++|+|++||+++++.. ||++++|++|++++.|+++++..
T Consensus 157 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 157 RLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 9999999999999999999999999875 47999999999998876 99999999999999999999864
No 231
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-40 Score=365.22 Aligned_cols=211 Identities=28% Similarity=0.439 Sum_probs=181.6
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++|++++|++. ++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 3 l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 3 LEARNLSVRLGGR--TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred EEEEeEEEEeCCe--eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 7899999999753 69999999999999999999999999999999999999999999999999988777777888999
Q ss_pred EcCCccc-ccccHHhhccCCCC-C--C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 867 IPQSPVL-FSGTVRFNLDPFSE-H--S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 867 v~Q~~~l-f~~tv~~nl~~~~~-~--~----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
+||++.+ +..|+++|+.+... . . +..+.++++.. |++...+....+||||||||++|||||
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGe~qrv~la~al 149 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQV-----------DLAHLAGRDYPQLSGGEQQRVQLARVL 149 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHc-----------CCHhHhcCCcccCCHHHHHHHHHHHHH
Confidence 9999987 56699999965321 1 1 11223333333 444455566778999999999999999
Q ss_pred c------cCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 939 L------RRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 939 l------~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
+ .+|++|||||||++||+.+...+.+.|+++. .++|||++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 150 ~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 150 AQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVL 229 (258)
T ss_pred hcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHh
Confidence 9 5999999999999999999999999999875 47899999999999976 9999999999999999998886
Q ss_pred h
Q 001055 1010 S 1010 (1171)
Q Consensus 1010 ~ 1010 (1171)
.
T Consensus 230 ~ 230 (258)
T PRK13548 230 T 230 (258)
T ss_pred C
Confidence 4
No 232
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4.5e-40 Score=353.79 Aligned_cols=199 Identities=28% Similarity=0.423 Sum_probs=179.9
Q ss_pred EEEEeeEEEeCCCC---CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhh
Q 001055 787 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 863 (1171)
Q Consensus 787 i~~~~vs~~y~~~~---~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 863 (1171)
++++||+++|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 47899999997542 3699999999999999999999999999999999999999999999998 6
Q ss_pred eEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001055 864 LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 943 (1171)
Q Consensus 864 i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~ 943 (1171)
|+|+||+|.+|+.|+++|+.+.....++...++++.+++.+++..+|.|+++..+....+||||||||++|||||+.+|+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ 147 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD 147 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998754445556777788888999999999999999988899999999999999999999999
Q ss_pred EEEEecCCcCCCHHHHHHHHH-HHHHHc-CCcEEEEEecChhhhhhcCEEEEEeCcE
Q 001055 944 ILVLDEATAAVDVRTDALIQK-TIREEF-KSCTMLIIAHRLNTIIDCDRILLLDSGR 998 (1171)
Q Consensus 944 iLlLDEpTs~LD~~t~~~i~~-~l~~~~-~~~tvi~vtH~~~~~~~~d~i~vl~~G~ 998 (1171)
++||||||++||+.+.+.+.+ .++... .++|||++||+++.+..||++++|++|+
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999998887 456553 3689999999999998899999999985
No 233
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-40 Score=361.41 Aligned_cols=208 Identities=24% Similarity=0.349 Sum_probs=172.0
Q ss_pred EEEEeeEEEeCCCC--CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhhe
Q 001055 787 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 864 (1171)
Q Consensus 787 i~~~~vs~~y~~~~--~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 864 (1171)
++++|++++|++.. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 46899999997521 369999999999999999999999999999999999999999999999998863 46789
Q ss_pred EEEcCCccccc-ccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 865 GIIPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 865 ~~v~Q~~~lf~-~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
+|+||++.+|. .|+++|+.+.. ....... ...+.++++.+ |++........+||||||||++|||||+.
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~ 148 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEA-----RERAEELLELV--GLSGFENAYPHQLSGGMRQRVALARALAV 148 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHc--CChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 99999999887 59999986421 1111111 11123334432 44445555667899999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEe--CcEEEEecChh
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLD--SGRVLEYDTPE 1006 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~--~G~i~~~g~~~ 1006 (1171)
+|++|||||||++||+.+.+.+++.|++.. .++|||+|||+++++.. ||++++|+ +|++++.++.+
T Consensus 149 ~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 149 DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 999999999999999999999999999874 37899999999998876 99999999 79999987753
No 234
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-40 Score=365.39 Aligned_cols=218 Identities=28% Similarity=0.417 Sum_probs=181.7
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcC---CCC--CCceEEECCEecCCC--ChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI---VEL--ERGRILIDGFDIAKF--GLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~---~~p--~~G~I~i~g~~i~~~--~~~ 858 (1171)
.++++|+++.|+.. ++|+|+||+|++||++||+||||||||||+++|+|+ ++| ++|+|.++|.++... +..
T Consensus 3 ~l~~~~~~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14245 3 KIDARDVNFWYGDF--HALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVD 80 (250)
T ss_pred EEEEEEEEEEECCE--eEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHH
Confidence 48999999999753 699999999999999999999999999999999997 454 589999999998754 235
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCC---CC-CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~-~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
.+|+.++|+||++.+|..|+.+|+.+.. .. .. ..+.++++.+++.+. +.+..+..+.+|||||||
T Consensus 81 ~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~G~~q 153 (250)
T PRK14245 81 ELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDE-------VKDKLKESAFALSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcc-------hhhhhhCCcccCCHHHHH
Confidence 6788899999999999889999996421 11 11 122333333332211 223455667889999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
|++|||||+.+|++|||||||++||+.++..+.+.|+++.+++|||+|||+++.+.. ||++++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999998778999999999999876 9999999999999999999998
Q ss_pred hcC
Q 001055 1010 SNE 1012 (1171)
Q Consensus 1010 ~~~ 1012 (1171)
+++
T Consensus 234 ~~~ 236 (250)
T PRK14245 234 TNP 236 (250)
T ss_pred cCC
Confidence 654
No 235
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2e-40 Score=358.50 Aligned_cols=204 Identities=27% Similarity=0.476 Sum_probs=170.3
Q ss_pred EEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEE
Q 001055 788 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 867 (1171)
Q Consensus 788 ~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 867 (1171)
+++|++++|++..+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.|+|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 36899999975223699999999999999999999999999999999999999999999999999877777788899999
Q ss_pred cCCcc--cccccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 868 PQSPV--LFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 868 ~Q~~~--lf~~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
||++. ++..|+++|+.+.. .....+..+ .+.++++. .|++.........||||||||++|||||+.+|
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~--~~l~~~~~~~~~~LSgG~~qrv~laral~~~p 153 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEE-----RVEEALEL--VGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDP 153 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHH--cCcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 99983 56779999996421 111111111 12233333 24545555666789999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhh-cCEEEEEeCcE
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGR 998 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~ 998 (1171)
++|||||||++||+.+++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|+
T Consensus 154 ~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 154 DILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999998754 7899999999999988 99999999985
No 236
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-40 Score=366.93 Aligned_cols=211 Identities=26% Similarity=0.447 Sum_probs=182.0
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 3 l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (255)
T PRK11231 3 LRTENLTVGYGTK--RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLAL 80 (255)
T ss_pred EEEEeEEEEECCE--EEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEE
Confidence 7899999999753 69999999999999999999999999999999999999999999999999887777778888999
Q ss_pred EcCCcccccc-cHHhhccCCCC--------CC---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001055 867 IPQSPVLFSG-TVRFNLDPFSE--------HS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 934 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~~--------~~---~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~l 934 (1171)
+||++.++.. |+.+|+.+... .. ++.+.++++.. |++...+.....||||||||++|
T Consensus 81 ~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~l 149 (255)
T PRK11231 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQT-----------RINHLADRRLTDLSGGQRQRAFL 149 (255)
T ss_pred ecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHc-----------CCHHHHcCCcccCCHHHHHHHHH
Confidence 9999988866 99999975310 01 11223333333 44444556677899999999999
Q ss_pred HHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 935 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 935 Arall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
|||++.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||++++|++|+++..|+++++..
T Consensus 150 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 150 AMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 999999999999999999999999999999998875 47899999999999876 99999999999999999888763
No 237
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.4e-40 Score=357.04 Aligned_cols=205 Identities=29% Similarity=0.526 Sum_probs=181.0
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecC
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRG 227 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~ 227 (1171)
+.+.++|++|+|++. .++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. +++
T Consensus 2 ~~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~ 79 (235)
T COG1122 2 RMIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQ 79 (235)
T ss_pred ceEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhc
Confidence 358999999999853 68999999999999999999999999999999999999999887521 356
Q ss_pred cEEEEecCC--CCCcccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHH
Q 001055 228 TVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 298 (1171)
Q Consensus 228 ~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~ 298 (1171)
+||||+|+| ++|..||.|.|.||.. .+. +++..+++.+++.+..+..| .+||||||||||
T Consensus 80 ~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRva 148 (235)
T COG1122 80 KVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVA 148 (235)
T ss_pred ceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHH
Confidence 799999999 6789999999999843 222 45667888999988876665 489999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001055 299 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 299 LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
||.+|+.+|+++|||||||+||+..++.+.+.+.+.... |+|+|++|||++++.. |||+++|++|+++.+|++.++.+
T Consensus 149 IA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 149 IAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred hhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 999999999999999999999999999999988877665 7899999999999876 89999999999999999988876
Q ss_pred cc
Q 001055 377 NG 378 (1171)
Q Consensus 377 ~~ 378 (1171)
+.
T Consensus 229 ~~ 230 (235)
T COG1122 229 DA 230 (235)
T ss_pred hh
Confidence 53
No 238
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.6e-40 Score=367.32 Aligned_cols=218 Identities=25% Similarity=0.459 Sum_probs=181.8
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCEecCCC--ChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAKF--GLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~-----p~~G~I~i~g~~i~~~--~~~ 858 (1171)
.++++|++++|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++... +..
T Consensus 21 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 21 ILEVKDLSIYYGEK--RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred eEEEEEEEEEeCCc--eeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 49999999999743 69999999999999999999999999999999999865 7899999999998643 334
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCC---CC-CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~-~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
.+++.++|+||++.+|..|+.+|+.+.. .. .. +.+.++++..++.. ++....+....+|||||||
T Consensus 99 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LSgGq~q 171 (268)
T PRK14248 99 NLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWD-------EVKDRLHSSALSLSGGQQQ 171 (268)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCc-------chHHHHhcCcccCCHHHHH
Confidence 5678899999999999889999986421 11 11 12233333332211 1123445667889999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|||++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998667899999999999876 9999999999999999999987
Q ss_pred hcC
Q 001055 1010 SNE 1012 (1171)
Q Consensus 1010 ~~~ 1012 (1171)
...
T Consensus 252 ~~~ 254 (268)
T PRK14248 252 TSP 254 (268)
T ss_pred hCC
Confidence 653
No 239
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.4e-40 Score=362.85 Aligned_cols=211 Identities=27% Similarity=0.440 Sum_probs=178.2
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH-HhhheE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRKILG 865 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~-~r~~i~ 865 (1171)
|+++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .++.++
T Consensus 1 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (230)
T TIGR03410 1 LEVSNLNVYYGQS--HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIA 78 (230)
T ss_pred CEEEeEEEEeCCe--EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeE
Confidence 4789999999753 6999999999999999999999999999999999999999999999999998776554 366799
Q ss_pred EEcCCcccccc-cHHhhccCCCC-C--CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFSE-H--SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~~-~--~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 941 (1171)
|+||++.+|.. |+++|+.+... . ...+. ..+.++.+ .++....+....+||||||||++|||||+++
T Consensus 79 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~--------~~~~l~~~-~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 149 (230)
T TIGR03410 79 YVPQGREIFPRLTVEENLLTGLAALPRRSRKI--------PDEIYELF-PVLKEMLGRRGGDLSGGQQQQLAIARALVTR 149 (230)
T ss_pred EeccCCcccCCCcHHHHHHHHHHhcCcchHHH--------HHHHHHHH-HhHHHHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999876 99999964211 1 11111 11222221 1233445666778999999999999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHH
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1008 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 1008 (1171)
|++|||||||++||+.++..+++.|.+..+ ++|+|++||+++++.. ||+|+++++|++++.|+++++
T Consensus 150 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 150 PKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 999999999999999999999999998764 6899999999999987 999999999999999999887
No 240
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-40 Score=365.09 Aligned_cols=218 Identities=24% Similarity=0.399 Sum_probs=181.7
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC--CC---CCceEEECCEecCCC--ChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV--EL---ERGRILIDGFDIAKF--GLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~--~p---~~G~I~i~g~~i~~~--~~~ 858 (1171)
.++++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|++ .| ++|+|.++|.++... +..
T Consensus 5 ~l~~~~l~~~~~~~--~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14239 5 ILQVSDLSVYYNKK--KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTV 82 (252)
T ss_pred eEEEEeeEEEECCe--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchH
Confidence 38999999999743 6999999999999999999999999999999999995 46 499999999998643 334
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCC---CC-CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~-~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
.+|+.++|+||++.+|+.|+++|+.+.. .. .. +++.++++.+++.+. +.+..+....+|||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~G~~q 155 (252)
T PRK14239 83 DLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDE-------VKDRLHDSALGLSGGQQQ 155 (252)
T ss_pred hhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchh-------HHHHHhcCcccCCHHHHH
Confidence 5678899999999999899999996421 11 11 122333333333221 223456677889999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
|++|||||+.+|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988667999999999999876 9999999999999999999987
Q ss_pred hcC
Q 001055 1010 SNE 1012 (1171)
Q Consensus 1010 ~~~ 1012 (1171)
+.+
T Consensus 236 ~~~ 238 (252)
T PRK14239 236 MNP 238 (252)
T ss_pred hCC
Confidence 654
No 241
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.2e-41 Score=339.13 Aligned_cols=207 Identities=26% Similarity=0.391 Sum_probs=175.9
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCC-----cc-------------
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD-----AS------------- 222 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g-----~~------------- 222 (1171)
+.++++|+++.|. ++.+|+|||++|++++++|++|||||||||||+++....+...| .+
T Consensus 6 ~~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 4689999999997 46799999999999999999999999999999999998876542 11
Q ss_pred -ceecCcEEEEecCCCCCcccHHHHHhcCCCC---C----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHH
Q 001055 223 -AVIRGTVAYVPQVSWIFNATVRDNILFGSAF---E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 294 (1171)
Q Consensus 223 -~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~---~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqr 294 (1171)
..+|++||+|+|.|.-|+.||+|||.+|... . ++.++..++.+.|++.... .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 2256789999999999999999999998421 1 2446667777777766542 23456678999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhc-CEEEEEeCCEEEEecChhH
Q 001055 295 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEEGTFED 373 (1171)
Q Consensus 295 qRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~-d~i~~l~~G~i~~~g~~~~ 373 (1171)
||++|||||+-+|+|||||||||+|||.+...|.+.+..++ +.-|+|+|||.+....++ |++..+..|++++.|+.++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~ 234 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDK 234 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHh
Confidence 99999999999999999999999999999999988655544 678999999999998875 9999999999999999998
Q ss_pred Hhhcc
Q 001055 374 LSNNG 378 (1171)
Q Consensus 374 l~~~~ 378 (1171)
+..++
T Consensus 235 iF~~P 239 (253)
T COG1117 235 IFTNP 239 (253)
T ss_pred hhcCc
Confidence 87664
No 242
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-40 Score=375.10 Aligned_cols=227 Identities=26% Similarity=0.387 Sum_probs=185.3
Q ss_pred cEEEEeeEEEeCCC--------CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCCh
Q 001055 786 SIKFEDVVLRYRPE--------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL 857 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~--------~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~ 857 (1171)
.|+++|+++.|+.. ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 38999999999631 2369999999999999999999999999999999999999999999999999988765
Q ss_pred H---HHhhheEEEcCCcc--cccc-cHHhhccC----CCCCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCCh
Q 001055 858 M---DLRKILGIIPQSPV--LFSG-TVRFNLDP----FSEHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSV 926 (1171)
Q Consensus 858 ~---~~r~~i~~v~Q~~~--lf~~-tv~~nl~~----~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~LSg 926 (1171)
. .+|++|+||||+|. ++.. |+.+|+.. .......+. ...+.++++.+ |++ ...+..+.+|||
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~-----~~~~~~~l~~~--gL~~~~~~~~p~~LSg 157 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAER-----REKALAMMAKV--GLRPEHYDRYPHMFSG 157 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHH-----HHHHHHHHHHC--CCChHHhcCCCccCCH
Confidence 4 45778999999983 5543 88887742 111122111 11223344442 333 234556778999
Q ss_pred hHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEec
Q 001055 927 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 927 Gqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
|||||++|||||+.+|++||+||||++||+.+...+++.|+++.+ +.|+|+||||++.+.. ||+|++|++|+|++.|
T Consensus 158 Gq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g 237 (327)
T PRK11308 158 GQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKG 237 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999998753 7899999999999987 9999999999999999
Q ss_pred ChhHHhhcCCChHHHH
Q 001055 1004 TPEELLSNEGSSFSKM 1019 (1171)
Q Consensus 1004 ~~~el~~~~~~~~~~~ 1019 (1171)
+++++.++....|.+.
T Consensus 238 ~~~~~~~~p~hpyt~~ 253 (327)
T PRK11308 238 TKEQIFNNPRHPYTQA 253 (327)
T ss_pred CHHHHhcCCCCHHHHH
Confidence 9999998765556543
No 243
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-40 Score=369.79 Aligned_cols=203 Identities=31% Similarity=0.445 Sum_probs=179.5
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEEE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 231 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~ 231 (1171)
.|+++|++++|++. .+++++||+|++||+++|+|||||||||||++|+|+.+|++|.+.. ..+.||+
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iam 79 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAM 79 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEE
Confidence 58999999999742 2999999999999999999999999999999999999999987643 2246999
Q ss_pred EecCCCCC-cccHHHHHhcCCCC-------CHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHh
Q 001055 232 VPQVSWIF-NATVRDNILFGSAF-------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 303 (1171)
Q Consensus 232 v~Q~~~l~-~~Tv~eni~~g~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL 303 (1171)
|+|+..|| ..||+|||.|+... .+.++.++.+..++.+.++..|. +|||||||||||||||
T Consensus 80 VFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~-----------~LSGGQrQRVAlaRAl 148 (338)
T COG3839 80 VFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPL-----------QLSGGQRQRVALARAL 148 (338)
T ss_pred EeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcc-----------cCChhhHHHHHHHHHH
Confidence 99999997 67999999998432 14577888999999999998884 8999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhcc
Q 001055 304 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNG 378 (1171)
Q Consensus 304 ~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 378 (1171)
+++|+++|||||+|+||+..+..+...+.+..+ -|.|+|+||||..++.. +|||.+|++|+|.+.|++.++..++
T Consensus 149 Vr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P 225 (338)
T COG3839 149 VRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERP 225 (338)
T ss_pred hcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCc
Confidence 999999999999999999999998888777544 48999999999988764 7999999999999999999987653
No 244
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=3.5e-40 Score=359.34 Aligned_cols=207 Identities=27% Similarity=0.420 Sum_probs=172.9
Q ss_pred EEEEeeEEEeCCCC--CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---Hh
Q 001055 787 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LR 861 (1171)
Q Consensus 787 i~~~~vs~~y~~~~--~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~r 861 (1171)
++++||+++|++.. .++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996421 36999999999999999999999999999999999999999999999999998776544 33
Q ss_pred -hheEEEcCCccccc-ccHHhhccCC---CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001055 862 -KILGIIPQSPVLFS-GTVRFNLDPF---SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 936 (1171)
Q Consensus 862 -~~i~~v~Q~~~lf~-~tv~~nl~~~---~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 936 (1171)
+.++|+||++.+|. .|+++|+.+. ......+.. ..+.++++. .|++...+....+||||||||++|||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~--~~l~~~~~~~~~~LS~G~~qrv~lar 154 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAK-----ERAYEMLEK--VGLEHRINHRPSELSGGERQRVAIAR 154 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHH--cCChhhhhCChhhCCHHHHHHHHHHH
Confidence 67999999998885 4999999642 111111111 112344444 35555566667889999999999999
Q ss_pred HhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhhcCEEEEEeCcEEE
Q 001055 937 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVL 1000 (1171)
Q Consensus 937 all~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~ 1000 (1171)
||+.+|+||||||||++||+.+...+.+.|+++. .++|+|++||+++.+..||+|++|++|+++
T Consensus 155 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 9999999999999999999999999999999875 378999999999999889999999999985
No 245
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-40 Score=370.74 Aligned_cols=217 Identities=22% Similarity=0.370 Sum_probs=182.2
Q ss_pred EEEEeeEEEeCCCC---CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCC----ChHH
Q 001055 787 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF----GLMD 859 (1171)
Q Consensus 787 i~~~~vs~~y~~~~---~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~----~~~~ 859 (1171)
++++||+++|++.. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997421 3699999999999999999999999999999999999999999999999998753 3456
Q ss_pred HhhheEEEcCCc--ccccccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHH
Q 001055 860 LRKILGIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLS 933 (1171)
Q Consensus 860 ~r~~i~~v~Q~~--~lf~~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~LSgGqkqrl~ 933 (1171)
+|+.|+|+||++ .+|..|+++|+.+.. .....+..+ .+.++++. .|++ ........+||||||||++
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~--~~l~~~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEA-----LAREKLAL--VGISESLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHH--cCCChhhhhCCcccCCHHHHHHHH
Confidence 788899999998 577789999996421 112222211 12334444 2554 2456677889999999999
Q ss_pred HHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 934 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 934 lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|||++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998754 7899999999999876 99999999999999999999865
No 246
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=2.7e-40 Score=376.15 Aligned_cols=207 Identities=26% Similarity=0.449 Sum_probs=174.9
Q ss_pred EeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccc
Q 001055 795 RYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF 874 (1171)
Q Consensus 795 ~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf 874 (1171)
+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .+..+|+.+||+||++.+|
T Consensus 2 ~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~ 78 (302)
T TIGR01188 2 VYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVD 78 (302)
T ss_pred eeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCC
Confidence 5653 369999999999999999999999999999999999999999999999999876 4456788899999999988
Q ss_pred cc-cHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecC
Q 001055 875 SG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEA 950 (1171)
Q Consensus 875 ~~-tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEp 950 (1171)
.. |+++|+.++.. ....+.. ..+.++++.+ |+....+....+|||||||||+|||||+++|++||||||
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 151 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAE-----ERAEELLELF--ELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEP 151 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 65 99999975321 1111111 1123444443 454555666778999999999999999999999999999
Q ss_pred CcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 951 TAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 951 Ts~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
|+|||+.+.+.+++.|+++. .++|||++||+++++.. ||+|++|++|++++.|+++++.+.
T Consensus 152 t~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 152 TTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 99999999999999999875 47899999999999987 999999999999999999998764
No 247
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-40 Score=367.91 Aligned_cols=212 Identities=23% Similarity=0.381 Sum_probs=182.9
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.|+++||+++|++. .+|+|+||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 7 ~l~i~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (265)
T PRK10253 7 RLRGEQLTLGYGKY--TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIG 84 (265)
T ss_pred EEEEEEEEEEECCE--EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheE
Confidence 59999999999753 6999999999999999999999999999999999999999999999999998877777888999
Q ss_pred EEcCCccccc-ccHHhhccCCC-C-------CCH---HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001055 866 IIPQSPVLFS-GTVRFNLDPFS-E-------HSD---ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 933 (1171)
Q Consensus 866 ~v~Q~~~lf~-~tv~~nl~~~~-~-------~~~---~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~ 933 (1171)
|+||++.+|. .|+++|+.+.. . ..+ +.+.++++.. |++...+....+||||||||++
T Consensus 85 ~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~Gq~qrv~ 153 (265)
T PRK10253 85 LLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQAT-----------GITHLADQSVDTLSGGQRQRAW 153 (265)
T ss_pred EeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHc-----------CCHHHhcCCcccCChHHHHHHH
Confidence 9999998875 59999986431 1 011 1223333333 4444455667889999999999
Q ss_pred HHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 934 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 934 lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
||||++.+|++|||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 154 laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 154 IAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233 (265)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence 99999999999999999999999999999999998753 7899999999999877 99999999999999999988764
No 248
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-40 Score=364.72 Aligned_cols=219 Identities=28% Similarity=0.414 Sum_probs=181.5
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCEecCC--CChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~-----p~~G~I~i~g~~i~~--~~~~ 858 (1171)
.|+++|++++|+.. ++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|+++.. .+..
T Consensus 4 ~l~~~~l~~~~~~~--~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~ 81 (251)
T PRK14251 4 IISAKDVHLSYGNY--EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLV 81 (251)
T ss_pred eEEEEeeEEEECCe--eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHH
Confidence 38999999999753 69999999999999999999999999999999999997 479999999999854 2334
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCCC---C-CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFSE---H-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~---~-~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
.+|+.++|+||++.+|..|+++|+.+... . .. .++.++++..++.+ ......+....+|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14251 82 ELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWK-------ETKDNLDRNAQAFSGGQQQ 154 (251)
T ss_pred HhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCc-------chHHHhccChhhCCHHHHH
Confidence 56788999999999998899999964211 1 11 12222333322211 0112345566789999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
|++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998667999999999999877 9999999999999999999987
Q ss_pred hcCC
Q 001055 1010 SNEG 1013 (1171)
Q Consensus 1010 ~~~~ 1013 (1171)
..+.
T Consensus 235 ~~~~ 238 (251)
T PRK14251 235 IAPK 238 (251)
T ss_pred hCCC
Confidence 5443
No 249
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.2e-40 Score=363.08 Aligned_cols=220 Identities=21% Similarity=0.377 Sum_probs=183.0
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--C---CCceEEECCEecCCC--Ch
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE--L---ERGRILIDGFDIAKF--GL 857 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~--p---~~G~I~i~g~~i~~~--~~ 857 (1171)
+.|+++|++++|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.++|.++... ..
T Consensus 3 ~~l~~~nl~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 80 (252)
T PRK14256 3 NKVKLEQLNVHFGKN--HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80 (252)
T ss_pred cEEEEEEEEEEeCCe--eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCCh
Confidence 459999999999743 69999999999999999999999999999999999986 4 689999999998643 34
Q ss_pred HHHhhheEEEcCCccccc-ccHHhhccCCC---C-CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhH
Q 001055 858 MDLRKILGIIPQSPVLFS-GTVRFNLDPFS---E-HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 928 (1171)
Q Consensus 858 ~~~r~~i~~v~Q~~~lf~-~tv~~nl~~~~---~-~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGq 928 (1171)
..+|+.++|+||++.+|. .|+++|+.+.. . ... +.+.++++..++...+ ....+..+.+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~ 153 (252)
T PRK14256 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEV-------KDRLKSNAMELSGGQ 153 (252)
T ss_pred HHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hHHhhCCcCcCCHHH
Confidence 467888999999999887 59999996421 1 111 2233334443332222 123345677899999
Q ss_pred HHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhH
Q 001055 929 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 1007 (1171)
Q Consensus 929 kqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~e 1007 (1171)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|||++||+++.+.. ||++++|++|++++.|++++
T Consensus 154 ~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14256 154 QQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKK 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998777899999999999876 99999999999999999999
Q ss_pred HhhcCC
Q 001055 1008 LLSNEG 1013 (1171)
Q Consensus 1008 l~~~~~ 1013 (1171)
+...+.
T Consensus 234 ~~~~~~ 239 (252)
T PRK14256 234 IFTTPE 239 (252)
T ss_pred HHhCCC
Confidence 876543
No 250
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-39 Score=363.90 Aligned_cols=218 Identities=21% Similarity=0.400 Sum_probs=184.3
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCEecCC--CChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~-----p~~G~I~i~g~~i~~--~~~~ 858 (1171)
.|+++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|+|++. |++|+|.++|.++.. .+..
T Consensus 10 ~l~i~~v~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 10 VLRTENLNVYYGSF--LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred EEEEeeeEEEECCE--EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 48999999999753 69999999999999999999999999999999999986 479999999998853 3455
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCCC---CC---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFSE---HS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 932 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~---~~---~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl 932 (1171)
.+|+.++|+||++.+|..|+.+|+.+... .. ++++.++++.+++.+.+. ...+..+.+||||||||+
T Consensus 88 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~qrv 160 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK-------DKLKQSGLSLSGGQQQRL 160 (264)
T ss_pred HHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHH-------HHhcCCcccCCHHHHHHH
Confidence 67888999999999888899999975321 11 123344445555443332 234556778999999999
Q ss_pred HHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEe---------CcEEEEe
Q 001055 933 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLD---------SGRVLEY 1002 (1171)
Q Consensus 933 ~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~---------~G~i~~~ 1002 (1171)
+|||||+.+|++|||||||++||+.+...+.+.|+++.+++|||++||+++.+.. ||||++|+ +|++++.
T Consensus 161 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~ 240 (264)
T PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEF 240 (264)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 9999999999999999999999999999999999998777899999999999877 99999998 8999999
Q ss_pred cChhHHhhcC
Q 001055 1003 DTPEELLSNE 1012 (1171)
Q Consensus 1003 g~~~el~~~~ 1012 (1171)
|+++++.+.+
T Consensus 241 ~~~~~~~~~~ 250 (264)
T PRK14243 241 DRTEKIFNSP 250 (264)
T ss_pred CCHHHHHhCC
Confidence 9999997654
No 251
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=3.7e-40 Score=360.92 Aligned_cols=211 Identities=25% Similarity=0.406 Sum_probs=173.5
Q ss_pred EEEEeeEEEeCCCC--CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCCh---HHHh
Q 001055 787 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL---MDLR 861 (1171)
Q Consensus 787 i~~~~vs~~y~~~~--~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~---~~~r 861 (1171)
|+++||+++|++.. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996431 269999999999999999999999999999999999999999999999999987663 4677
Q ss_pred hheEEEcCCc--ccc-cccHHhhccCC----CCCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHH
Q 001055 862 KILGIIPQSP--VLF-SGTVRFNLDPF----SEHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLS 933 (1171)
Q Consensus 862 ~~i~~v~Q~~--~lf-~~tv~~nl~~~----~~~~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~LSgGqkqrl~ 933 (1171)
+.++|+||++ .++ ..|+++|+.+. ....+++..+. ...+.++.+ ++. ...+....+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~----~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~ 155 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKE----AVLLLLVGV--GLPEEVLNRYPHELSGGQRQRVA 155 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHH----HHHHHHHHC--CCChhHhhCCchhcCHHHHHHHH
Confidence 8899999999 344 46999998532 11111111110 012334443 453 4556777889999999999
Q ss_pred HHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEec
Q 001055 934 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 934 lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|||++||+++.+.. ||+|++|++|++++.|
T Consensus 156 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 156 IARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999999998764 7899999999999986 9999999999998764
No 252
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-40 Score=368.61 Aligned_cols=215 Identities=27% Similarity=0.409 Sum_probs=183.9
Q ss_pred cEEEEeeEEEeCCC-CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhhe
Q 001055 786 SIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 864 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~-~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 864 (1171)
.++++||+++|++. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 38999999999742 23599999999999999999999999999999999999999999999999999877777788899
Q ss_pred EEEcCCcc--cccccHHhhccCCC---CCCHHH----HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001055 865 GIIPQSPV--LFSGTVRFNLDPFS---EHSDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 935 (1171)
Q Consensus 865 ~~v~Q~~~--lf~~tv~~nl~~~~---~~~~~~----i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 935 (1171)
+|+||++. ++..|+.+|+.+.. ...+++ +.++++.++ +....+.....||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVN-----------MLDFKTREPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCC-----------CHhHhhCCcccCCHHHHHHHHHH
Confidence 99999983 56779999996421 122222 233334333 43444455678999999999999
Q ss_pred HHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhc
Q 001055 936 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 936 rall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
|||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++++.
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998754 7899999999999978999999999999999999998754
No 253
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.9e-40 Score=369.02 Aligned_cols=215 Identities=25% Similarity=0.412 Sum_probs=182.2
Q ss_pred cEEEEeeEEEeCCC----CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCC-hHHH
Q 001055 786 SIKFEDVVLRYRPE----LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG-LMDL 860 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~----~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~-~~~~ 860 (1171)
.++++|++++|++. .+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 48999999999642 236999999999999999999999999999999999999999999999999987543 3557
Q ss_pred hhheEEEcCCcc--cccccHHhhccCCCC---CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001055 861 RKILGIIPQSPV--LFSGTVRFNLDPFSE---HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 931 (1171)
Q Consensus 861 r~~i~~v~Q~~~--lf~~tv~~nl~~~~~---~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqr 931 (1171)
|+.+||+||+|. ++..|+.+|+.+... ... +.+.++++.++ +....+....+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g-----------L~~~~~~~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVG-----------MYEYRRHAPHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCC-----------CHhHhhCCcccCCHHHHHH
Confidence 889999999984 666689999965321 122 22344444444 4444445557899999999
Q ss_pred HHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHh
Q 001055 932 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 932 l~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
++|||||+.+|++|||||||++||+.++..+.+.|+++. .++|||++||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999999875 378999999999998789999999999999999999987
Q ss_pred hc
Q 001055 1010 SN 1011 (1171)
Q Consensus 1010 ~~ 1011 (1171)
..
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 54
No 254
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=9.9e-40 Score=365.13 Aligned_cols=218 Identities=27% Similarity=0.457 Sum_probs=180.7
Q ss_pred EEEEeeEEEeCCC-------CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH
Q 001055 787 IKFEDVVLRYRPE-------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD 859 (1171)
Q Consensus 787 i~~~~vs~~y~~~-------~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~ 859 (1171)
|+++||+++|++. .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999631 246999999999999999999999999999999999999999999999999998766543
Q ss_pred ---HhhheEEEcCCcc--ccc-ccHHhhccCC----CCCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhH
Q 001055 860 ---LRKILGIIPQSPV--LFS-GTVRFNLDPF----SEHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQ 928 (1171)
Q Consensus 860 ---~r~~i~~v~Q~~~--lf~-~tv~~nl~~~----~~~~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~LSgGq 928 (1171)
+|+.|+|+||++. ++. .|+++|+.+. ......+ ....+.++++.+ |++ ...+..+..|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~-----~~~~~~~~l~~~--gl~~~~~~~~~~~LSgGe 155 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESE-----QKARIAELLDMV--GLRSEDADKLPRQLSGGQ 155 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHH-----HHHHHHHHHHHc--CCChhhhhCChhhCCHHH
Confidence 5678999999983 443 5999998521 1111111 111233444443 553 34566678899999
Q ss_pred HHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecCh
Q 001055 929 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 1005 (1171)
Q Consensus 929 kqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~ 1005 (1171)
|||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|||+|||+++.+.. ||++++|++|++++.|++
T Consensus 156 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~ 235 (265)
T TIGR02769 156 LQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDV 235 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCH
Confidence 9999999999999999999999999999999999999998753 7899999999999986 999999999999999999
Q ss_pred hHHhhc
Q 001055 1006 EELLSN 1011 (1171)
Q Consensus 1006 ~el~~~ 1011 (1171)
+++...
T Consensus 236 ~~~~~~ 241 (265)
T TIGR02769 236 AQLLSF 241 (265)
T ss_pred HHHcCC
Confidence 999864
No 255
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-39 Score=365.02 Aligned_cols=218 Identities=24% Similarity=0.430 Sum_probs=184.2
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCEecCC--CChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~-----p~~G~I~i~g~~i~~--~~~~ 858 (1171)
.|+++||+++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++.. .+..
T Consensus 20 ~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 97 (267)
T PRK14237 20 ALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVY 97 (267)
T ss_pred EEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChH
Confidence 5999999999964 379999999999999999999999999999999999997 589999999999864 2345
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCC---CC-CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~-~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
.+|+.|+|+||++.+|..|+++|+.+.. .. .+ +.+.++++..++.+.+ +...+..+.+|||||||
T Consensus 98 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~G~~q 170 (267)
T PRK14237 98 EMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV-------KDDLHKSALTLSGGQQQ 170 (267)
T ss_pred HHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh-------hhhhcCCcccCCHHHHH
Confidence 6788899999999999889999997521 11 11 2233344444432222 23456677899999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
|++|||||+++|++|||||||++||+.+...+.+.|+++..+.|+|+|||+++.+.. ||++++|++|++++.|+++++.
T Consensus 171 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 171 RLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999998767999999999999876 9999999999999999999987
Q ss_pred hcC
Q 001055 1010 SNE 1012 (1171)
Q Consensus 1010 ~~~ 1012 (1171)
+.+
T Consensus 251 ~~~ 253 (267)
T PRK14237 251 TNP 253 (267)
T ss_pred cCC
Confidence 543
No 256
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=8.7e-40 Score=362.34 Aligned_cols=203 Identities=29% Similarity=0.408 Sum_probs=174.4
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.|+++||+++|++. ++|+|+||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++. .+++.++
T Consensus 12 ~l~i~~l~~~~~~~--~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i~ 84 (257)
T PRK11247 12 PLLLNAVSKRYGER--TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDTR 84 (257)
T ss_pred cEEEEEEEEEECCc--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCceE
Confidence 49999999999753 6999999999999999999999999999999999999999999999998763 4677899
Q ss_pred EEcCCccccc-ccHHhhccCCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001055 866 IIPQSPVLFS-GTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 943 (1171)
Q Consensus 866 ~v~Q~~~lf~-~tv~~nl~~~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~ 943 (1171)
|+||++.+|. .|+++|+.+... ..++++.++++.. |+....+....+||||||||++|||||+++|+
T Consensus 85 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~ 153 (257)
T PRK11247 85 LMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAV-----------GLADRANEWPAALSGGQKQRVALARALIHRPG 153 (257)
T ss_pred EEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHc-----------CChhHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999887 599999975321 1123344444443 44444555667899999999999999999999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChh
Q 001055 944 ILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPE 1006 (1171)
Q Consensus 944 iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~ 1006 (1171)
+|||||||++||+.+...+.+.|+++. .++|||+|||+++.+.. ||+|++|++|++++.|+.+
T Consensus 154 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 154 LLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999998864 37899999999999876 9999999999999988764
No 257
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-40 Score=361.48 Aligned_cols=215 Identities=25% Similarity=0.366 Sum_probs=181.3
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCC------CChHHH
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK------FGLMDL 860 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~------~~~~~~ 860 (1171)
++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .....+
T Consensus 3 l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 3 IQLNGINCFYGAH--QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEeeEEEECCe--eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 7899999999753 69999999999999999999999999999999999999999999999998731 123456
Q ss_pred hhheEEEcCCcccccc-cHHhhccCCC----CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001055 861 RKILGIIPQSPVLFSG-TVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 935 (1171)
Q Consensus 861 r~~i~~v~Q~~~lf~~-tv~~nl~~~~----~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 935 (1171)
|+.++|+||++.+|.. |+.+|+.... .....+.. ..+.++++.+ |++...+....+||||||||++||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la 153 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQAL-----ARAEKLLERL--RLKPYADRFPLHLSGGQQQRVAIA 153 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHH
Confidence 7889999999998865 9999986311 11111111 1234445443 566666677789999999999999
Q ss_pred HHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 936 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 936 rall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
|||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 154 ral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 230 (242)
T PRK11124 154 RALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQ 230 (242)
T ss_pred HHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcC
Confidence 999999999999999999999999999999998754 7999999999999976 99999999999999999988753
No 258
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.9e-40 Score=374.13 Aligned_cols=225 Identities=20% Similarity=0.379 Sum_probs=182.4
Q ss_pred EEEEeeEEEeCCCC--CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC----CCCceEEECCEecCCCChHHH
Q 001055 787 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE----LERGRILIDGFDIAKFGLMDL 860 (1171)
Q Consensus 787 i~~~~vs~~y~~~~--~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~----p~~G~I~i~g~~i~~~~~~~~ 860 (1171)
++++||++.|+... .++|+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++..++...+
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 89999999996532 259999999999999999999999999999999999998 489999999999988877665
Q ss_pred hh----heEEEcCCcc--ccc-ccHHhhcc----CCCCCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCC
Q 001055 861 RK----ILGIIPQSPV--LFS-GTVRFNLD----PFSEHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFS 925 (1171)
Q Consensus 861 r~----~i~~v~Q~~~--lf~-~tv~~nl~----~~~~~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LS 925 (1171)
++ .|+||||++. ++. .|+.+++. ....... +.+.+.++..++.+. ....+..+.+||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~--------~~~l~~~p~~LS 155 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDP--------ASRLDVYPHQLS 155 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------HHHHhCCchhCC
Confidence 43 6999999984 443 36665542 2211111 223334444333210 123456678899
Q ss_pred hhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEe
Q 001055 926 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEY 1002 (1171)
Q Consensus 926 gGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~ 1002 (1171)
|||||||+|||||+.+|+|||+||||++||+.++..+++.|+++.+ +.|+|+||||++.+.. ||||++|.+|+|++.
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998753 7899999999999976 999999999999999
Q ss_pred cChhHHhhcCCChHHHH
Q 001055 1003 DTPEELLSNEGSSFSKM 1019 (1171)
Q Consensus 1003 g~~~el~~~~~~~~~~~ 1019 (1171)
|+++++.+++...|.+.
T Consensus 236 g~~~~~~~~p~hpyt~~ 252 (326)
T PRK11022 236 GKAHDIFRAPRHPYTQA 252 (326)
T ss_pred CCHHHHhhCCCChHHHH
Confidence 99999997765556543
No 259
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-39 Score=361.39 Aligned_cols=218 Identities=26% Similarity=0.416 Sum_probs=183.9
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-----CceEEECCEecCCC--ChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAKF--GLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~-----~G~I~i~g~~i~~~--~~~ 858 (1171)
.++++|++++|++ +++|+|+||+|.+|+++||+||||||||||+++|+|+++|+ +|+|.++|.++... +..
T Consensus 4 ~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 81 (251)
T PRK14249 4 KIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVV 81 (251)
T ss_pred eEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChH
Confidence 4899999999974 36999999999999999999999999999999999999997 69999999998643 345
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCCC----CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFSE----HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~----~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
.+|+.++|+||++.+|..|+++|+.+... ... +.+.++++..++.+. +....+..+.+|||||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14249 82 NLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDE-------VKDNLHKSGLALSGGQQQ 154 (251)
T ss_pred HhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchh-------hhhHhhCCcccCCHHHHH
Confidence 67888999999999998899999974321 111 122233333333222 233456677899999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|||+|||+++.+.. ||++++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988667999999999999887 8999999999999999999987
Q ss_pred hcC
Q 001055 1010 SNE 1012 (1171)
Q Consensus 1010 ~~~ 1012 (1171)
..+
T Consensus 235 ~~~ 237 (251)
T PRK14249 235 SRP 237 (251)
T ss_pred hCC
Confidence 654
No 260
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-39 Score=362.07 Aligned_cols=218 Identities=24% Similarity=0.386 Sum_probs=183.2
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEecCCCC--hH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKFG--LM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-----~~G~I~i~g~~i~~~~--~~ 858 (1171)
.++++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++...+ ..
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 4 KMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred EEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 4899999999974 3699999999999999999999999999999999999885 7999999999986532 34
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCCC---C-CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFSE---H-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~---~-~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
..++.++|+||++.+|..|+++|+.+... . .. +++.++++.+++.+ ++....+.....|||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~~q 154 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWD-------EVKDDLKKSALKLSGGQQQ 154 (251)
T ss_pred HHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCch-------hhhhHhhCCcccCCHHHHH
Confidence 56788999999999998999999974321 1 11 12333444433321 1223445667889999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
|++||||++.+|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. |||+++|++|++++.|+++++.
T Consensus 155 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 155 RLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHh
Confidence 999999999999999999999999999999999999998767999999999999877 9999999999999999999987
Q ss_pred hcC
Q 001055 1010 SNE 1012 (1171)
Q Consensus 1010 ~~~ 1012 (1171)
...
T Consensus 235 ~~~ 237 (251)
T PRK14270 235 LEP 237 (251)
T ss_pred cCC
Confidence 543
No 261
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-40 Score=363.16 Aligned_cols=218 Identities=26% Similarity=0.430 Sum_probs=182.7
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEecCCC--ChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKF--GLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-----~~G~I~i~g~~i~~~--~~~ 858 (1171)
.|+++||++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~ 80 (250)
T PRK14262 3 IIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVT 80 (250)
T ss_pred eEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHH
Confidence 3899999999974 3699999999999999999999999999999999999984 899999999988653 234
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCC----CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFS----EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~----~~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
.+++.++|+||++.+|..|+++|+.+.. ...+ +.+.++++..++.+.+ +...+....+|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~q 153 (250)
T PRK14262 81 EYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV-------KSELNKPGTRLSGGQQQ 153 (250)
T ss_pred HhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh-------HHHHhCChhhcCHHHHH
Confidence 5678899999999999899999997421 1111 1233334443332211 23356677889999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
|++|||||+.+|++|||||||++||+.+...+++.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999999999999999998777999999999998776 9999999999999999999987
Q ss_pred hcC
Q 001055 1010 SNE 1012 (1171)
Q Consensus 1010 ~~~ 1012 (1171)
+..
T Consensus 234 ~~~ 236 (250)
T PRK14262 234 ERP 236 (250)
T ss_pred hCC
Confidence 643
No 262
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=3.1e-40 Score=357.87 Aligned_cols=200 Identities=26% Similarity=0.398 Sum_probs=169.1
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChH---HHhhh
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM---DLRKI 863 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~---~~r~~ 863 (1171)
++++|++++|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.. .+++.
T Consensus 2 l~~~~l~~~~~~~-~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCC-ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 7899999999532 3699999999999999999999999999999999999999999999999999876543 36778
Q ss_pred eEEEcCCccccc-ccHHhhccCCC---CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001055 864 LGIIPQSPVLFS-GTVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 935 (1171)
Q Consensus 864 i~~v~Q~~~lf~-~tv~~nl~~~~---~~~----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 935 (1171)
++|+||++.+|. .|+++|+.+.. ... ++++.++++..++. ........+||||||||++||
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrl~la 149 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLE-----------HKADAFPEQLSGGEQQRVAIA 149 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-----------hhhhCChhhCCHHHHHHHHHH
Confidence 999999999886 59999986421 111 12334444444443 333444568999999999999
Q ss_pred HHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcE
Q 001055 936 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGR 998 (1171)
Q Consensus 936 rall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~ 998 (1171)
|||+.+|++|||||||++||+.++..+.+.|+++. +++|+|++||+++++.. ||++++|++|+
T Consensus 150 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 150 RAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999999875 47999999999999987 99999999985
No 263
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-40 Score=364.86 Aligned_cols=218 Identities=25% Similarity=0.440 Sum_probs=181.1
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCEecCCCC--hHH
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAKFG--LMD 859 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~-----p~~G~I~i~g~~i~~~~--~~~ 859 (1171)
-+++||+++|++ +++|+|+||+|.+||++||+|+||||||||+++|+|+++ |++|+|.++|.++...+ ...
T Consensus 6 ~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 6 ASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 478999999964 369999999999999999999999999999999999986 47999999999886543 235
Q ss_pred HhhheEEEcCCcccccccHHhhccCCC---CC--C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 860 LRKILGIIPQSPVLFSGTVRFNLDPFS---EH--S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 860 ~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~--~----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
+|+.++|+||++.+|..|+.+|+.+.. .. . ++++.++++..++.+. +.+..+..+.+|||||||
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~Gq~q 156 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEE-------LGDRLKDSAFELSGGQQQ 156 (251)
T ss_pred HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCch-------hhhHhhcChhhCCHHHHH
Confidence 688899999999999889999986421 11 1 1122333343333221 112345667789999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
|++|||||+++|++|||||||++||+.+++.+.+.|+++.+++|+|+|||+++++.. ||+|++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF 236 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999988778999999999999876 9999999999999999999998
Q ss_pred hcCC
Q 001055 1010 SNEG 1013 (1171)
Q Consensus 1010 ~~~~ 1013 (1171)
+.+.
T Consensus 237 ~~~~ 240 (251)
T PRK14244 237 KNPQ 240 (251)
T ss_pred cCCC
Confidence 6543
No 264
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-39 Score=365.38 Aligned_cols=218 Identities=25% Similarity=0.410 Sum_probs=183.2
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCEecCC--CChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAK--FGLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~-----p~~G~I~i~g~~i~~--~~~~ 858 (1171)
.++++|++++|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.. .+..
T Consensus 24 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 101 (271)
T PRK14238 24 VFDTQNLNLWYGED--HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVE 101 (271)
T ss_pred EEEEeeeEEEECCc--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHH
Confidence 59999999999753 69999999999999999999999999999999999997 699999999999853 3445
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCC---CCCHH-H----HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EHSDA-D----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~~~~-~----i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
.+++.++|+||++.+|..|+++|+.+.. ...+. . +.++++..++. .++....+..+..|||||||
T Consensus 102 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~l~~~~~~~~~~LSgGe~q 174 (271)
T PRK14238 102 ELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIW-------DELKDRLHDNAYGLSGGQQQ 174 (271)
T ss_pred HHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCc-------chHHHHHhcCcccCCHHHHH
Confidence 6788899999999999889999996421 11111 1 12222222111 13334456677899999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
|++|||||+.+|+||||||||++||+.+...+.+.|+++.+++|+|++||+++++.. ||++++|++|++++.|+++++.
T Consensus 175 rv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 175 RLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIF 254 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998778999999999999876 9999999999999999999987
Q ss_pred hcC
Q 001055 1010 SNE 1012 (1171)
Q Consensus 1010 ~~~ 1012 (1171)
..+
T Consensus 255 ~~~ 257 (271)
T PRK14238 255 SNP 257 (271)
T ss_pred cCC
Confidence 654
No 265
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-40 Score=367.66 Aligned_cols=216 Identities=25% Similarity=0.434 Sum_probs=178.6
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecC--CCChHHHhhhe
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA--KFGLMDLRKIL 864 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~--~~~~~~~r~~i 864 (1171)
++++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+.|
T Consensus 2 l~~~~l~~~~~~~--~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i 79 (271)
T PRK13638 2 LATSDLWFRYQDE--PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQV 79 (271)
T ss_pred eEEEEEEEEcCCc--ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhhe
Confidence 7899999999743 6999999999999999999999999999999999999999999999999985 22345677889
Q ss_pred EEEcCCcc--cccccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001055 865 GIIPQSPV--LFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 939 (1171)
Q Consensus 865 ~~v~Q~~~--lf~~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 939 (1171)
+|+||++. ++..|+.+|+.+.. .....+..+ .+.+.++.+ |++...+....+||||||||++|||||+
T Consensus 80 ~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~laraL~ 152 (271)
T PRK13638 80 ATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITR-----RVDEALTLV--DAQHFRHQPIQCLSHGQKKRVAIAGALV 152 (271)
T ss_pred EEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHhHhcCCchhCCHHHHHHHHHHHHHH
Confidence 99999985 56668999986421 112222111 122233332 3444445566789999999999999999
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 940 RRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 940 ~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
.+|+||||||||++||+.+...+.+.|+++. .++|||+|||+++.+.. ||++++|++|++++.|+++++...
T Consensus 153 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 153 LQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999875 47899999999999976 999999999999999999988653
No 266
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-40 Score=371.06 Aligned_cols=219 Identities=21% Similarity=0.385 Sum_probs=181.3
Q ss_pred ccEEEEeeEEEeCCCC---CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCC----C-C
Q 001055 785 GSIKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK----F-G 856 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~---~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~----~-~ 856 (1171)
+.|+++|++++|+++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 4699999999997532 259999999999999999999999999999999999999999999999998852 1 3
Q ss_pred hHHHhhheEEEcCCc--ccccccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHH
Q 001055 857 LMDLRKILGIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 857 ~~~~r~~i~~v~Q~~--~lf~~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~LSgGqkq 930 (1171)
...+|+.|+|+||++ .+|..|+++|+.+.. .....+..+ .+.+.++.+ ++. ...+....+|||||||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~ll~~~--~L~~~~~~~~~~~LS~Gq~q 157 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYK-----KVPELLKLV--QLPEDYVKRSPFELSGGQKR 157 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCChhHhcCChhhCCHHHHH
Confidence 456778899999998 466779999996421 112222211 122333332 442 3456667889999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhH
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 1007 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~e 1007 (1171)
|++|||||+.+|++|||||||++||+.+.+.+++.|+++.+ ++|||+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 158 rv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 237 (289)
T PRK13645 158 RVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFE 237 (289)
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999998753 7899999999999876 99999999999999999998
Q ss_pred Hhh
Q 001055 1008 LLS 1010 (1171)
Q Consensus 1008 l~~ 1010 (1171)
+..
T Consensus 238 ~~~ 240 (289)
T PRK13645 238 IFS 240 (289)
T ss_pred Hhc
Confidence 865
No 267
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-39 Score=365.59 Aligned_cols=219 Identities=24% Similarity=0.447 Sum_probs=183.0
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++|++++|++..+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 48999999999754346999999999999999999999999999999999999999999999999998877778888999
Q ss_pred EEcCCcc-cc-cccHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 866 IIPQSPV-LF-SGTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 866 ~v~Q~~~-lf-~~tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
|+||++. +| ..|+++|+.+... ....+..+ .+.+.++. .|+....+....+||||||||++||||++.
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~--~~l~~~~~~~~~~LS~G~~qrl~laral~~ 159 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHR-----RVSEALKQ--VDMLERADYEPNALSGGQKQRVAIAGVLAL 159 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHH-----HHHHHHHH--cCCchhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 9999984 44 5589999864311 11111111 12222332 234444555667899999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhc
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||||++|++|++++.|+++++...
T Consensus 160 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 160 NPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999998753 7899999999999878999999999999999999998653
No 268
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-39 Score=362.09 Aligned_cols=218 Identities=24% Similarity=0.407 Sum_probs=183.0
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEecCCC--ChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKF--GLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-----~~G~I~i~g~~i~~~--~~~ 858 (1171)
.|+++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+.+| ++|+|.++|.++... +..
T Consensus 6 ~i~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 6 ILSTKNLNLWYGEK--HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred eEEEeeeEEEECCe--eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 48999999999643 699999999999999999999999999999999999763 489999999998765 345
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCCCC----CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFSEH----SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~----~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
..++.++|+||++.+|..|+++|+.+.... .. ..+.++++.+++.+ ++.+..+..+.+|||||||
T Consensus 84 ~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~q 156 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWD-------EVKDRLHDSALSLSGGQQQ 156 (253)
T ss_pred hhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCch-------hhHHHhhcChhhCCHHHHH
Confidence 667889999999999988999999753211 11 12233333333221 2234456677889999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
|++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 157 rv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 157 RLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHH
Confidence 999999999999999999999999999999999999988767999999999999976 9999999999999999999987
Q ss_pred hcC
Q 001055 1010 SNE 1012 (1171)
Q Consensus 1010 ~~~ 1012 (1171)
..+
T Consensus 237 ~~~ 239 (253)
T PRK14261 237 ENP 239 (253)
T ss_pred hCC
Confidence 644
No 269
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=4e-40 Score=356.72 Aligned_cols=197 Identities=34% Similarity=0.499 Sum_probs=164.6
Q ss_pred EEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEE
Q 001055 788 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 867 (1171)
Q Consensus 788 ~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 867 (1171)
+++||+++|++. ++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+|+.++|+
T Consensus 1 ~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v 73 (213)
T cd03235 1 EVEDLTVSYGGH--PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73 (213)
T ss_pred CcccceeEECCE--EeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence 367999999653 6999999999999999999999999999999999999999999999998764 467789999
Q ss_pred cCCccc---ccccHHhhccCCCCC--------C---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001055 868 PQSPVL---FSGTVRFNLDPFSEH--------S---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 933 (1171)
Q Consensus 868 ~Q~~~l---f~~tv~~nl~~~~~~--------~---~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~ 933 (1171)
||++.+ +..|+++|+.+.... . ++++.++++.. |++........+||||||||++
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~~qrv~ 142 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERV-----------GLSELADRQIGELSGGQQQRVL 142 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHc-----------CCHHHHhCCcccCCHHHHHHHH
Confidence 999876 457999998642210 1 12233333333 4444445566789999999999
Q ss_pred HHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEec
Q 001055 934 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 934 lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
|||||+.+|++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++++.. ||+|++|++| +++.|
T Consensus 143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999999875 57899999999999977 9999999886 55543
No 270
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=5.5e-40 Score=355.98 Aligned_cols=201 Identities=25% Similarity=0.366 Sum_probs=169.7
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChH---HHhhh
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM---DLRKI 863 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~---~~r~~ 863 (1171)
++++|++++|++. +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.. .+|+.
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 4689999999643 3699999999999999999999999999999999999999999999999999776543 46778
Q ss_pred eEEEcCCcccccc-cHHhhccCCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001055 864 LGIIPQSPVLFSG-TVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 935 (1171)
Q Consensus 864 i~~v~Q~~~lf~~-tv~~nl~~~~---~~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 935 (1171)
++|+||++.+|.. |+++|+.+.. .... +++.++++.. |++...+....+||||||||++||
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~la 148 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELV-----------GLSHKHRALPAELSGGEQQRVAIA 148 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CCHHHhhCChhhcCHHHHHHHHHH
Confidence 9999999998875 9999996431 1111 1233333333 444444555678999999999999
Q ss_pred HHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEE
Q 001055 936 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRV 999 (1171)
Q Consensus 936 rall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i 999 (1171)
|||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++
T Consensus 149 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 149 RAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999874 47999999999999987 999999999974
No 271
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-39 Score=360.36 Aligned_cols=217 Identities=26% Similarity=0.400 Sum_probs=182.7
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEecC-CCChHH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIA-KFGLMD 859 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-----~~G~I~i~g~~i~-~~~~~~ 859 (1171)
.++++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++. ..+...
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~ 80 (249)
T PRK14253 3 KFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVAD 80 (249)
T ss_pred eEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHH
Confidence 3899999999974 3699999999999999999999999999999999999986 5999999999985 345567
Q ss_pred HhhheEEEcCCcccccccHHhhccCCC---CC-CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001055 860 LRKILGIIPQSPVLFSGTVRFNLDPFS---EH-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 931 (1171)
Q Consensus 860 ~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~-~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqr 931 (1171)
+|+.++|+||++.+|..|+.+|+.+.. .. .+ +++.++++..++.+ .+....+....+||||||||
T Consensus 81 ~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~LS~G~~qr 153 (249)
T PRK14253 81 LRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWD-------EVKDRLKSHAFGLSGGQQQR 153 (249)
T ss_pred HHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCch-------hhhHHhhcCcccCCHHHHHH
Confidence 788999999999999889999996421 11 11 12223333333322 12234556677899999999
Q ss_pred HHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 932 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 932 l~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
++|||||+.+|+||||||||++||+.+...+.+.|+++.+++|||++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 154 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (249)
T PRK14253 154 LCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233 (249)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999999998777999999999999887 99999999999999999998865
Q ss_pred c
Q 001055 1011 N 1011 (1171)
Q Consensus 1011 ~ 1011 (1171)
.
T Consensus 234 ~ 234 (249)
T PRK14253 234 N 234 (249)
T ss_pred C
Confidence 4
No 272
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=9.6e-40 Score=341.54 Aligned_cols=172 Identities=38% Similarity=0.671 Sum_probs=160.8
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++|++++|++...++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 47899999997533469999999999999999999999999999999999999999999999999988888888899999
Q ss_pred EcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 001055 867 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 946 (1171)
Q Consensus 867 v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLl 946 (1171)
++|++.+|..|+++|+ ||||||||++|||||+.+|++||
T Consensus 81 ~~q~~~~~~~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~~p~~ll 119 (173)
T cd03246 81 LPQDDELFSGSIAENI-----------------------------------------LSGGQRQRLGLARALYGNPRILV 119 (173)
T ss_pred ECCCCccccCcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999988999887 99999999999999999999999
Q ss_pred EecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhhcCEEEEEeCcEE
Q 001055 947 LDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIIDCDRILLLDSGRV 999 (1171)
Q Consensus 947 LDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~~d~i~vl~~G~i 999 (1171)
|||||++||+.++..+.+.|+++.+ ++|+|++||+++.+..||++++|++|++
T Consensus 120 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 120 LDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 9999999999999999999998754 7899999999999877999999999974
No 273
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=4.1e-39 Score=360.52 Aligned_cols=210 Identities=24% Similarity=0.363 Sum_probs=187.3
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhhe
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 864 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 864 (1171)
+.|+++|+++. . +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++| .|
T Consensus 38 ~~l~i~nls~~--~--~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~i 100 (282)
T cd03291 38 NNLFFSNLCLV--G--APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------RI 100 (282)
T ss_pred CeEEEEEEEEe--c--ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------EE
Confidence 45999999995 2 3699999999999999999999999999999999999999999999997 39
Q ss_pred EEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001055 865 GIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 944 (1171)
Q Consensus 865 ~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 944 (1171)
+|+||++.+|+.|+++|+.+.....+..+.+.++.+++.+.+..+|.+.++.+++.+.+||||||||++|||||+.+|++
T Consensus 101 ~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~i 180 (282)
T cd03291 101 SFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADL 180 (282)
T ss_pred EEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999998999999976433334455666777888888999998888888888889999999999999999999999
Q ss_pred EEEecCCcCCCHHHHHHHHHHH-HHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhc
Q 001055 945 LVLDEATAAVDVRTDALIQKTI-REEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 945 LlLDEpTs~LD~~t~~~i~~~l-~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
|||||||++||+.+...+.+.+ +....++|||++||+++.+..||++++|++|++++.|+++++...
T Consensus 181 LiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 248 (282)
T cd03291 181 YLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL 248 (282)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999998754 555567999999999999877999999999999999999998754
No 274
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-39 Score=362.75 Aligned_cols=221 Identities=24% Similarity=0.357 Sum_probs=184.5
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH-hhhe
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKIL 864 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i 864 (1171)
.++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... +..+
T Consensus 5 ~l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 5 LLSVSGLMMRFGGL--LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred eEEEeeEEEEECCE--EEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 48999999999643 69999999999999999999999999999999999999999999999999987766554 4469
Q ss_pred EEEcCCcccccc-cHHhhccCCCC----------CCH-HHHH--HHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 865 GIIPQSPVLFSG-TVRFNLDPFSE----------HSD-ADLW--EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 865 ~~v~Q~~~lf~~-tv~~nl~~~~~----------~~~-~~i~--~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
+|+||++.+|.. |+++|+.+... ..+ .... .......+.++++.+ |++...+....+|||||||
T Consensus 83 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~q 160 (255)
T PRK11300 83 VRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV--GLLEHANRQAGNLAYGQQR 160 (255)
T ss_pred EEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC--ChhhhhhCChhhCCHHHHH
Confidence 999999999875 99999974210 000 0000 000111234455553 6666777788899999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhH
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 1007 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~e 1007 (1171)
|++|||||+.+|++|||||||++||+.+.+.+.+.|.++.+ ++|||++||+++.+.. ||++++|++|++++.|++++
T Consensus 161 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 240 (255)
T PRK11300 161 RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEE 240 (255)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHH
Confidence 99999999999999999999999999999999999998753 6899999999999977 99999999999999999988
Q ss_pred Hhh
Q 001055 1008 LLS 1010 (1171)
Q Consensus 1008 l~~ 1010 (1171)
+..
T Consensus 241 ~~~ 243 (255)
T PRK11300 241 IRN 243 (255)
T ss_pred Hhh
Confidence 864
No 275
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-39 Score=364.09 Aligned_cols=218 Identities=26% Similarity=0.411 Sum_probs=183.7
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEecCC--CCh
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FGL 857 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-----~~G~I~i~g~~i~~--~~~ 857 (1171)
+.++++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 24 ~~l~~~nl~~~~~~~--~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 24 TALEVRNLNLFYGDK--QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred cEEEEEEEEEEECCe--eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 359999999999653 699999999999999999999999999999999999884 89999999999864 334
Q ss_pred HHHhhheEEEcCCcccccccHHhhccCCC---CC-CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHH
Q 001055 858 MDLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 929 (1171)
Q Consensus 858 ~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~-~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqk 929 (1171)
..+|+.++|+||++.+|..|+++|+.+.. .. .. +.+.++++.+++.+.+ .+..+..+.+||||||
T Consensus 102 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 174 (272)
T PRK14236 102 AELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEV-------KDRLHENAFGLSGGQQ 174 (272)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhH-------HHHhhCCcccCCHHHH
Confidence 56788999999999999889999996421 11 11 2233344443332221 2345566788999999
Q ss_pred HHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHH
Q 001055 930 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1008 (1171)
Q Consensus 930 qrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 1008 (1171)
||++|||||+++|+||||||||++||+.+...+++.|+++.+++|+|++||+++++.. ||+|++|++|++++.|+++++
T Consensus 175 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 254 (272)
T PRK14236 175 QRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTL 254 (272)
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999876 999999999999999999998
Q ss_pred hhc
Q 001055 1009 LSN 1011 (1171)
Q Consensus 1009 ~~~ 1011 (1171)
.+.
T Consensus 255 ~~~ 257 (272)
T PRK14236 255 FTS 257 (272)
T ss_pred hcC
Confidence 754
No 276
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=1e-39 Score=363.46 Aligned_cols=220 Identities=25% Similarity=0.370 Sum_probs=182.1
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++|+++.|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 2 l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (256)
T TIGR03873 2 LRLSRVSWSAGGR--LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVAL 79 (256)
T ss_pred ceEEeEEEEECCE--EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEE
Confidence 7899999999753 69999999999999999999999999999999999999999999999999988877777888999
Q ss_pred EcCCcccc-cccHHhhccCCCCCCHHHH--HHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001055 867 IPQSPVLF-SGTVRFNLDPFSEHSDADL--WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 943 (1171)
Q Consensus 867 v~Q~~~lf-~~tv~~nl~~~~~~~~~~i--~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~ 943 (1171)
+||++.++ ..|+++|+.+......... ........+.+.++.+ |+.........+||||||||++||||++.+|+
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 157 (256)
T TIGR03873 80 VEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALART--ELSHLADRDMSTLSGGERQRVHVARALAQEPK 157 (256)
T ss_pred ecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 99998644 5699999965311000000 0000011233444443 44445566677899999999999999999999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 944 ILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 944 iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
+|||||||++||+.+...+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 158 LLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999998754 6899999999999966 99999999999999999988753
No 277
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-40 Score=352.46 Aligned_cols=203 Identities=31% Similarity=0.457 Sum_probs=176.2
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecCc
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 228 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~ 228 (1171)
+|.++|+++.|+. .++++||||+|+.||.+++.|||||||||||++|+|++.|+.|.+.. ..++
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~ 78 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRK 78 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcc
Confidence 5889999999974 57999999999999999999999999999999999999999986532 1236
Q ss_pred EEEEecCCCCC-cccHHHHHhcCCCC---------CHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHH
Q 001055 229 VAYVPQVSWIF-NATVRDNILFGSAF---------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 298 (1171)
Q Consensus 229 i~~v~Q~~~l~-~~Tv~eni~~g~~~---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~ 298 (1171)
||+|+|+..+| ..||.+||.||... ...++.+.++.|+|...-+..| ..||||||||||
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQRVA 147 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQRVA 147 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHHHH
Confidence 99999999987 78999999999521 1245556678888887777776 489999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhh
Q 001055 299 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 299 LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
|||||+.+|++||||||+++||++.+..+-..|.+...+ |.|+|+||||.++.- .+|||++|++|+|...|+++++..
T Consensus 148 LARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~ 227 (345)
T COG1118 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD 227 (345)
T ss_pred HHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence 999999999999999999999999999888877765444 899999999999875 579999999999999999999876
Q ss_pred cc
Q 001055 377 NG 378 (1171)
Q Consensus 377 ~~ 378 (1171)
.+
T Consensus 228 ~P 229 (345)
T COG1118 228 HP 229 (345)
T ss_pred CC
Confidence 53
No 278
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-39 Score=352.30 Aligned_cols=200 Identities=26% Similarity=0.405 Sum_probs=169.0
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++|++++|++. . .|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 i~~~~l~~~~~~~--~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 74 (211)
T cd03298 1 VRLDKIRFSYGEQ--P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSM 74 (211)
T ss_pred CEEEeEEEEeCCE--e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEE
Confidence 4789999999643 2 39999999999999999999999999999999999999999999999876553 3578999
Q ss_pred EcCCcccccc-cHHhhccCCCC--C-----CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 867 IPQSPVLFSG-TVRFNLDPFSE--H-----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~~--~-----~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
+||++.+|.. |+++|+.+... . .++++.++++..++. ...+....+||||||||++|||||
T Consensus 75 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~ia~al 143 (211)
T cd03298 75 LFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLA-----------GLEKRLPGELSGGERQRVALARVL 143 (211)
T ss_pred EecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCH-----------HHHhCCcccCCHHHHHHHHHHHHH
Confidence 9999998875 99999974321 1 122344444444443 334445568999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEec
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
+.+|++|||||||++||+.+...+++.|+++. .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 144 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 144 VRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999999875 37899999999999977 9999999999998754
No 279
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.2e-40 Score=349.35 Aligned_cols=222 Identities=30% Similarity=0.418 Sum_probs=191.2
Q ss_pred cEEEEeeEEEeCCCC----------------------CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc
Q 001055 786 SIKFEDVVLRYRPEL----------------------PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG 843 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~----------------------~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G 843 (1171)
.|+++||++-|+.+. ...++|+||+|+.||+..|.|-||||||||+++|.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 489999999886431 1258999999999999999999999999999999999999999
Q ss_pred eEEECCEecCCCChHHH----hhheEEEcCCcccccc-cHHhhccCCCCC---C----HHHHHHHHHHhcHHHHHHHccC
Q 001055 844 RILIDGFDIAKFGLMDL----RKILGIIPQSPVLFSG-TVRFNLDPFSEH---S----DADLWEALERAHLKDAIRRNSL 911 (1171)
Q Consensus 844 ~I~i~g~~i~~~~~~~~----r~~i~~v~Q~~~lf~~-tv~~nl~~~~~~---~----~~~i~~~l~~~~~~~~i~~lp~ 911 (1171)
+|.++|.|+..++..++ |+++++|+|...|++. ||.+|..+.-+. . .+...+.++.+|+.+|-.+
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~--- 160 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADK--- 160 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhc---
Confidence 99999999999998876 3469999999999976 999999865331 2 2234555566655555544
Q ss_pred CcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-c
Q 001055 912 GLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-C 988 (1171)
Q Consensus 912 gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~ 988 (1171)
.+.+||||+||||.|||||..+|+|||+|||+|+|||--+..+++-|.++.. .+||++||||++++.+ -
T Consensus 161 --------yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 161 --------YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred --------CcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 4468999999999999999999999999999999999999999999988653 6999999999999877 9
Q ss_pred CEEEEEeCcEEEEecChhHHhhcCCChHHH
Q 001055 989 DRILLLDSGRVLEYDTPEELLSNEGSSFSK 1018 (1171)
Q Consensus 989 d~i~vl~~G~i~~~g~~~el~~~~~~~~~~ 1018 (1171)
|||.+|++|+|+..|||+|++.++...|-.
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~ 262 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPANDYVR 262 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCccHHHHH
Confidence 999999999999999999999888766653
No 280
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-39 Score=362.32 Aligned_cols=219 Identities=26% Similarity=0.388 Sum_probs=183.9
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEecCC--CChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FGLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-----~~G~I~i~g~~i~~--~~~~ 858 (1171)
.++++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++.. ....
T Consensus 7 ~l~~~~l~~~~~~~--~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 7 AIKVKDLSFYYNTS--KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred eEEEEEEEEEECCe--EeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence 49999999999753 699999999999999999999999999999999999985 48999999998854 3345
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCC----CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFS----EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~----~~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
.+++.++|+||++.+|..|+++|+.+.. ...+ +.+.++++.+++.+.+ ....+..+..|||||||
T Consensus 85 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~q 157 (259)
T PRK14260 85 RLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEV-------KDKLNKSALGLSGGQQQ 157 (259)
T ss_pred hhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh-------hhHhcCCcccCCHHHHH
Confidence 6778899999999999899999996421 1111 2234444544443322 22345567789999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEe-----CcEEEEecC
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLD-----SGRVLEYDT 1004 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~-----~G~i~~~g~ 1004 (1171)
|++|||||+++|++|||||||++||+.+...+++.|++..+++|||++||+++++.. ||++++|+ +|++++.|+
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~ 237 (259)
T PRK14260 158 RLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGV 237 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCC
Confidence 999999999999999999999999999999999999998777999999999999987 99999998 599999999
Q ss_pred hhHHhhcCC
Q 001055 1005 PEELLSNEG 1013 (1171)
Q Consensus 1005 ~~el~~~~~ 1013 (1171)
++++.+.+.
T Consensus 238 ~~~~~~~~~ 246 (259)
T PRK14260 238 TTQIFSNPL 246 (259)
T ss_pred HHHHhcCCC
Confidence 999976543
No 281
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=1.1e-39 Score=355.53 Aligned_cols=207 Identities=27% Similarity=0.404 Sum_probs=171.8
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---Hhhh
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LRKI 863 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~r~~ 863 (1171)
|+++|++++|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... +|+.
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGG-RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCC-CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 7899999999432 36999999999999999999999999999999999999999999999999998765443 5788
Q ss_pred eEEEcCCcccc-cccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001055 864 LGIIPQSPVLF-SGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 939 (1171)
Q Consensus 864 i~~v~Q~~~lf-~~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 939 (1171)
++|+||++.++ ..|+++|+.+.. ....++..+. +.++++. .|+....+....+||||||||++|||||+
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~--~~l~~~~~~~~~~LS~G~~qrv~laral~ 153 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRR-----VSAALDK--VGLLDKAKNFPIQLSGGEQQRVGIARAVV 153 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHH-----HHHHHHH--cCChhhhhCCchhCCHHHHHHHHHHHHHH
Confidence 99999999875 569999997521 1222222111 1223333 23444445566789999999999999999
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEE
Q 001055 940 RRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 1001 (1171)
Q Consensus 940 ~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~ 1001 (1171)
.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++++.. ||+|++|++|+++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 154 NKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 9999999999999999999999999999875 46899999999999987 99999999999864
No 282
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.1e-39 Score=344.31 Aligned_cols=193 Identities=28% Similarity=0.443 Sum_probs=161.4
Q ss_pred EEEEeeEEEcCCCC-CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------------e
Q 001055 163 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------I 225 (1171)
Q Consensus 163 i~~~~~s~~~~~~~-~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------------~ 225 (1171)
++++|+++.|..+. ..++|+++||+|++||+++|+|||||||||||++|.|+..|++|.+.. .
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67999999997432 247999999999999999999999999999999999999998876432 2
Q ss_pred cCcEEEEecCCCCC-cccHHHHHhcC----CCCC---HHHHHHHHHHcCchHHHh-cCCCCCccccCCCCCccChHHHHH
Q 001055 226 RGTVAYVPQVSWIF-NATVRDNILFG----SAFE---PARYEKAIDVTSLQHDLD-LLPGGDVTEIGERGVNISGGQKQR 296 (1171)
Q Consensus 226 ~~~i~~v~Q~~~l~-~~Tv~eni~~g----~~~~---~~~~~~~~~~~~l~~~~~-~~~~~~~~~i~~~g~~LSGGqrqR 296 (1171)
+..||||+|+..|. ..||.|||.+. .... ..+....++..++.+... ..| .+||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----------~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP-----------SELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc-----------hhcCHHHHHH
Confidence 34699999999885 78999999853 2111 234445556666665544 334 5899999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhhcCEEEEEeCCEEE
Q 001055 297 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQVDRIILVHEGMVK 366 (1171)
Q Consensus 297 v~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~~d~i~~l~~G~i~ 366 (1171)
|||||||+.+|++++.||||.+||.++.+.+++.+....++ |+|+|+||||......|||++.+.+|++.
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 99999999999999999999999999999999988776544 89999999999999999999999999843
No 283
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.5e-39 Score=356.00 Aligned_cols=206 Identities=23% Similarity=0.342 Sum_probs=172.5
Q ss_pred cEEEEeeEEEeCCCC--CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---H
Q 001055 786 SIKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---L 860 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~--~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~ 860 (1171)
.++++|++++|++.. .++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 489999999997532 25999999999999999999999999999999999999999999999999998776543 2
Q ss_pred -hhheEEEcCCcccccc-cHHhhccCC---CCCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001055 861 -RKILGIIPQSPVLFSG-TVRFNLDPF---SEHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 931 (1171)
Q Consensus 861 -r~~i~~v~Q~~~lf~~-tv~~nl~~~---~~~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqr 931 (1171)
++.++|+||++.+|.. |+.+|+.+. ..... +++.++++.. |+..........||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQL-----------GLGKRLDHLPAQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCHhHhhCChhhCCHHHHHH
Confidence 3579999999998875 999998642 11111 2233334433 34444445557899999999
Q ss_pred HHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhhcCEEEEEeCcEEEEe
Q 001055 932 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEY 1002 (1171)
Q Consensus 932 l~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~ 1002 (1171)
++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|||++||+++.+..||++++|++|++++.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999998743 7899999999999877999999999999764
No 284
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.9e-40 Score=354.06 Aligned_cols=204 Identities=25% Similarity=0.476 Sum_probs=171.9
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++|++++|++. ++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ..++.++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~ 74 (210)
T cd03269 1 LEVENVTKRFGRV--TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGY 74 (210)
T ss_pred CEEEEEEEEECCE--EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEE
Confidence 4789999999643 69999999999999999999999999999999999999999999999988743 45778999
Q ss_pred EcCCcccccc-cHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 867 IPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
+||++.+|.. |+++|+.+... ....+. ...+.++++.+ |++........+||||||||++|||||+.+|
T Consensus 75 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 147 (210)
T cd03269 75 LPEERGLYPKMKVIDQLVYLAQLKGLKKEEA-----RRRIDEWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHDP 147 (210)
T ss_pred eccCCcCCcCCcHHHHHHHHHHHcCCChHHH-----HHHHHHHHHHc--CChHHHhCcHhhCCHHHHHHHHHHHHHhcCC
Confidence 9999998875 99999864311 111111 11234445443 5555566667789999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEec
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
++|||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 148 ~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 148 ELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 9999999999999999999999999875 46899999999999876 9999999999998754
No 285
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=1.1e-39 Score=355.90 Aligned_cols=210 Identities=24% Similarity=0.338 Sum_probs=178.8
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.|+++||+++|++. ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++..+++.++
T Consensus 7 ~i~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 7 LLQLQNVGYLAGDA--KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred eEEEeccEEeeCCc--eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 49999999999743 6999999999999999999999999999999999999999999999999998888777888999
Q ss_pred EEcCCcccccccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHHHHHHhccC
Q 001055 866 IIPQSPVLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 866 ~v~Q~~~lf~~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~LSgGqkqrl~lArall~~ 941 (1171)
|+||++.+|..|+++|+.+.. .....+ ..+.++++.+ |+. +..+....+|||||||||+|||||+.+
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~-------~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~laral~~~ 155 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDP-------AIFLDDLERF--ALPDTILTKNIAELSGGEKQRISLIRNLQFM 155 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHH-------HHHHHHHHHc--CCChHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999999889999996421 111110 1123344443 443 345667789999999999999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhhcCEEEEEe-CcEEEEecChh
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLD-SGRVLEYDTPE 1006 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~-~G~i~~~g~~~ 1006 (1171)
|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||++++|+ ++..+++|+|+
T Consensus 156 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 156 PKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999999998753 789999999999998899999995 66677778775
No 286
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-39 Score=361.87 Aligned_cols=218 Identities=26% Similarity=0.446 Sum_probs=181.2
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEecCC--CChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK--FGLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-----~~G~I~i~g~~i~~--~~~~ 858 (1171)
.++++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++.. .+..
T Consensus 4 ~l~i~~v~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~ 81 (258)
T PRK14241 4 RIDVKDLNIYYGSF--HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81 (258)
T ss_pred cEEEeeEEEEECCE--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChH
Confidence 38999999999753 699999999999999999999999999999999999974 69999999999853 3445
Q ss_pred HHhhheEEEcCCccccc-ccHHhhccCCC---C-CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHH
Q 001055 859 DLRKILGIIPQSPVLFS-GTVRFNLDPFS---E-HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 929 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~-~tv~~nl~~~~---~-~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqk 929 (1171)
.+|+.++|+||++.+|. .|+++|+.+.. . ... +.+.++++..++.+. +....+....+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~G~~ 154 (258)
T PRK14241 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNE-------VKDRLDKPGGGLSGGQQ 154 (258)
T ss_pred HHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchh-------hhhHhhCCcccCCHHHH
Confidence 67888999999999886 49999986321 1 111 122333333333211 12345566788999999
Q ss_pred HHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEe------CcEEEEe
Q 001055 930 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLD------SGRVLEY 1002 (1171)
Q Consensus 930 qrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~------~G~i~~~ 1002 (1171)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++++.. ||+|++|+ +|+|++.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~ 234 (258)
T PRK14241 155 QRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEI 234 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEec
Confidence 9999999999999999999999999999999999999988667999999999999876 99999997 7999999
Q ss_pred cChhHHhhcC
Q 001055 1003 DTPEELLSNE 1012 (1171)
Q Consensus 1003 g~~~el~~~~ 1012 (1171)
|+++++....
T Consensus 235 ~~~~~~~~~~ 244 (258)
T PRK14241 235 DDTEKIFSNP 244 (258)
T ss_pred CCHHHHHhCc
Confidence 9999987643
No 287
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.1e-39 Score=354.35 Aligned_cols=208 Identities=26% Similarity=0.377 Sum_probs=176.6
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++||+++|++. ..|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 2 l~~~~l~~~~~~~----~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 75 (232)
T PRK10771 2 LKLTDITWLYHHL----PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSM 75 (232)
T ss_pred eEEEEEEEEECCc----cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEE
Confidence 7899999999642 239999999999999999999999999999999999999999999999876543 3567999
Q ss_pred EcCCcccccc-cHHhhccCCC-CC---C---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 867 IPQSPVLFSG-TVRFNLDPFS-EH---S---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~-~~---~---~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
+||++.+|.. |+.+|+.+.. .. . ++++.++++..++ +...+.....||||||||++||||+
T Consensus 76 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~laral 144 (232)
T PRK10771 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGI-----------EDLLARLPGQLSGGQRQRVALARCL 144 (232)
T ss_pred EecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCc-----------HHHHhCCcccCCHHHHHHHHHHHHH
Confidence 9999998875 9999997421 11 1 2234444444444 4444555568999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 145 ~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 145 VREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999998753 7899999999999877 999999999999999999998753
No 288
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.7e-40 Score=369.87 Aligned_cols=204 Identities=33% Similarity=0.478 Sum_probs=179.2
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEE
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVA 230 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~ 230 (1171)
+.++++|++++|+ +..+++|+||+|++||+++|+|||||||||||++|+|+..|++|.+.. .++.||
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig 80 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIG 80 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccc
Confidence 4699999999997 468999999999999999999999999999999999999999986532 234699
Q ss_pred EEecCCCCC-cccHHHHHhcCCC----CC-H---HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHH
Q 001055 231 YVPQVSWIF-NATVRDNILFGSA----FE-P---ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 301 (1171)
Q Consensus 231 ~v~Q~~~l~-~~Tv~eni~~g~~----~~-~---~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAr 301 (1171)
+|+|+-.|| ..||+|||.||.. .. . +++.++++..++.+..+..| .+|||||||||||||
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALAR 149 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALAR 149 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHHH
Confidence 999999998 6899999999954 12 2 36777888888888777666 489999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhcc
Q 001055 302 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNG 378 (1171)
Q Consensus 302 aL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 378 (1171)
||+.+|+|||||||+|+||.+-+..+-..+++..+ .|.|.|+||||.++.- .+|||++|++|+|...|+++++...+
T Consensus 150 AL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 150 ALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 99999999999999999999999999888777543 4999999999998854 57999999999999999999997654
No 289
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=4e-39 Score=359.07 Aligned_cols=219 Identities=24% Similarity=0.402 Sum_probs=182.2
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEe-----cCCCChHHH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFD-----IAKFGLMDL 860 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~-----i~~~~~~~~ 860 (1171)
.++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+ +...+....
T Consensus 6 ~l~~~~l~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~ 83 (258)
T PRK11701 6 LLSVRGLTKLYGPR--KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAER 83 (258)
T ss_pred eEEEeeeEEEcCCc--eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHH
Confidence 48999999999753 69999999999999999999999999999999999999999999999998 776665442
Q ss_pred ----hhheEEEcCCcc--ccc-ccHHhhccC----CCCCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhH
Q 001055 861 ----RKILGIIPQSPV--LFS-GTVRFNLDP----FSEHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQ 928 (1171)
Q Consensus 861 ----r~~i~~v~Q~~~--lf~-~tv~~nl~~----~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~LSgGq 928 (1171)
++.++|+||++. ++. .|+.+|+.. +......+.. ..+.++++.+ +++ +..+..+.+|||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LS~Gq 156 (258)
T PRK11701 84 RRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIR-----ATAGDWLERV--EIDAARIDDLPTTFSGGM 156 (258)
T ss_pred HHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHH-----HHHHHHHHHc--CCChhHHhCCCccCCHHH
Confidence 457999999984 333 478887742 1111111111 1245666665 343 45677888999999
Q ss_pred HHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecCh
Q 001055 929 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 1005 (1171)
Q Consensus 929 kqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~ 1005 (1171)
|||++|||||+.+|+||||||||++||+.+.+.+++.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~ 236 (258)
T PRK11701 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLT 236 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999988653 7899999999999986 999999999999999999
Q ss_pred hHHhhcCC
Q 001055 1006 EELLSNEG 1013 (1171)
Q Consensus 1006 ~el~~~~~ 1013 (1171)
+++..++.
T Consensus 237 ~~~~~~~~ 244 (258)
T PRK11701 237 DQVLDDPQ 244 (258)
T ss_pred HHHhcCCC
Confidence 99876543
No 290
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-39 Score=366.49 Aligned_cols=219 Identities=25% Similarity=0.353 Sum_probs=182.0
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCEecCCC--ChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAKF--GLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~-----p~~G~I~i~g~~i~~~--~~~ 858 (1171)
.++++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.++|.++... +..
T Consensus 39 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~ 116 (286)
T PRK14275 39 HVVAKNFSIYYGEF--EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEV 116 (286)
T ss_pred EEEEeeeEEEECCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchH
Confidence 58999999999653 69999999999999999999999999999999999864 4999999999988643 233
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCC---CC-CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~-~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
.+|+.++|+||++.+|..|+.+|+.+.. .. .. +.+.++++..++.+ ++....+.....|||||||
T Consensus 117 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LSgGq~q 189 (286)
T PRK14275 117 LLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWD-------EVSDRLDKNALGLSGGQQQ 189 (286)
T ss_pred HhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCcc-------chhhHhhCChhhCCHHHHH
Confidence 5678899999999999889999997421 11 11 12233333333221 1223345667789999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
|++|||||+.+|++|||||||++||+.+...+.+.|+++..++|||++||+++++.. ||++++|++|++++.|+++++.
T Consensus 190 rv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 190 RLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988767899999999999877 9999999999999999999987
Q ss_pred hcCC
Q 001055 1010 SNEG 1013 (1171)
Q Consensus 1010 ~~~~ 1013 (1171)
+.+.
T Consensus 270 ~~~~ 273 (286)
T PRK14275 270 TNPK 273 (286)
T ss_pred hCCC
Confidence 6543
No 291
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2e-39 Score=352.42 Aligned_cols=210 Identities=22% Similarity=0.334 Sum_probs=184.3
Q ss_pred EEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCCh----HHHhhh
Q 001055 788 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL----MDLRKI 863 (1171)
Q Consensus 788 ~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~----~~~r~~ 863 (1171)
.+.|+.|+|++. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...|+.
T Consensus 2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 578999999755 469999999999999999999999999999999999999999999999998865442 235677
Q ss_pred eEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001055 864 LGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 943 (1171)
Q Consensus 864 i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~ 943 (1171)
++|+||++.+|+.|+++|+.+.....+++..++++..++.+.+..+|.++++..+....+||||||||++||||++.+|+
T Consensus 81 i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 160 (218)
T cd03290 81 VAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTN 160 (218)
T ss_pred EEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999999889999998654444555677788888888888889999988888888999999999999999999999
Q ss_pred EEEEecCCcCCCHHHHHHHHH--HHHHHc-CCcEEEEEecChhhhhhcCEEEEEeCcE
Q 001055 944 ILVLDEATAAVDVRTDALIQK--TIREEF-KSCTMLIIAHRLNTIIDCDRILLLDSGR 998 (1171)
Q Consensus 944 iLlLDEpTs~LD~~t~~~i~~--~l~~~~-~~~tvi~vtH~~~~~~~~d~i~vl~~G~ 998 (1171)
+|||||||++||+.+...+++ .++... .+.|+|++||+++.+..||++++|++|+
T Consensus 161 illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 161 IVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999999999887 455443 3689999999999987899999999884
No 292
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=4.9e-40 Score=434.21 Aligned_cols=225 Identities=25% Similarity=0.380 Sum_probs=192.8
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhhe
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 864 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 864 (1171)
..|+++||+++|+++.+++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+.+
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~I 1005 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSL 1005 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcE
Confidence 3599999999996333479999999999999999999999999999999999999999999999999965 456678899
Q ss_pred EEEcCCcccccc-cHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 865 GIIPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 865 ~~v~Q~~~lf~~-tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
|||||++.+|.. ||+|||.++.. ....+.. ..+.+.++. .|++...+....+|||||||||+|||||+.
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~-----~~v~~lL~~--vgL~~~~~~~~~~LSGGqKQRLsLArALi~ 1078 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQ-----LEMEAMLED--TGLHHKRNEEAQDLSGGMQRKLSVAIAFVG 1078 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHH--cCCchhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 999999998865 99999975421 1222211 123344444 356666677778999999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCChHH
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 1017 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 1017 (1171)
+|+||||||||+|||+.+++.+++.|++..+++|||++||++++++. ||||++|++|++++.|++++|.++.+..|.
T Consensus 1079 ~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~~g~gy~ 1156 (2272)
T TIGR01257 1079 DAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGFY 1156 (2272)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHhcCCcEE
Confidence 99999999999999999999999999998778999999999999987 999999999999999999999887665554
No 293
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-39 Score=363.24 Aligned_cols=219 Identities=26% Similarity=0.434 Sum_probs=182.1
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCEecCCC--Ch
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAKF--GL 857 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~-----p~~G~I~i~g~~i~~~--~~ 857 (1171)
..|+++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++... +.
T Consensus 38 ~~l~i~~l~~~~~~~--~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 38 TVIEARDLNVFYGDE--QALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred ceEEEEEEEEEECCE--eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 358999999999753 69999999999999999999999999999999999997 6899999999998643 34
Q ss_pred HHHhhheEEEcCCcccccccHHhhccCCC---CCC---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001055 858 MDLRKILGIIPQSPVLFSGTVRFNLDPFS---EHS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 931 (1171)
Q Consensus 858 ~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~~---~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqr 931 (1171)
..+++.++|+||++.+|..|+.+|+.+.. ... ++++.++++..++... +....+....+||||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------i~~~~~~~~~~LSgGe~qr 188 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDE-------VKDQLDSSGLDLSGGQQQR 188 (285)
T ss_pred HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCch-------hHHHHhCCcccCCHHHHHH
Confidence 56788999999999988889999996421 111 2233334444333211 1233456677899999999
Q ss_pred HHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEE-EEeCcEEEEecChhHHh
Q 001055 932 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRIL-LLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 932 l~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~-vl~~G~i~~~g~~~el~ 1009 (1171)
|+|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. |||++ +|++|+|++.|+++++.
T Consensus 189 v~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 189 LCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIF 268 (285)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998767899999999999887 99976 56999999999999987
Q ss_pred hcC
Q 001055 1010 SNE 1012 (1171)
Q Consensus 1010 ~~~ 1012 (1171)
+..
T Consensus 269 ~~~ 271 (285)
T PRK14254 269 ENP 271 (285)
T ss_pred hCc
Confidence 543
No 294
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-39 Score=364.67 Aligned_cols=217 Identities=26% Similarity=0.457 Sum_probs=180.3
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCC--CChHHHhhhe
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK--FGLMDLRKIL 864 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~--~~~~~~r~~i 864 (1171)
++++||+++|++. +++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.|
T Consensus 2 l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPDG-TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 7899999999643 369999999999999999999999999999999999999999999999999853 2234578889
Q ss_pred EEEcCCc--ccccccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001055 865 GIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 939 (1171)
Q Consensus 865 ~~v~Q~~--~lf~~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 939 (1171)
+|+||++ .+|..|+.+|+.+.. .....+..+ .+.+.++. .|++...+....+|||||+||++|||||+
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~l~~--~~L~~~~~~~~~~LS~Gq~qrv~laral~ 153 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEK-----RVKEALKA--VGMEGFENKPPHHLSGGQKKRVAIAGILA 153 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHH--CCCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 9999997 467789999996421 112211111 12233333 24444455566789999999999999999
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 940 RRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 940 ~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
.+|++|||||||++||+.+...+.+.|+++.+ ++|||++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 154 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 154 MKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999998754 7899999999999876 999999999999999999998753
No 295
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=1.4e-39 Score=375.90 Aligned_cols=209 Identities=24% Similarity=0.366 Sum_probs=172.7
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCE----ecCCCChHHH---h-hheEEEcCCccc
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF----DIAKFGLMDL---R-KILGIIPQSPVL 873 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~----~i~~~~~~~~---r-~~i~~v~Q~~~l 873 (1171)
.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++...+...+ | ++|+||||++.+
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 5899999999999999999999999999999999999999999999996 5666655544 3 579999999999
Q ss_pred cc-ccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEec
Q 001055 874 FS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 949 (1171)
Q Consensus 874 f~-~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDE 949 (1171)
|+ .|+++|+.+.. .....+.. ..+.++++. .|++...+....+||||||||++|||||+.+|+||||||
T Consensus 118 ~p~~Tv~eNi~~~~~~~g~~~~~~~-----~~a~e~le~--vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDE 190 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQGMPEAERR-----KRVDEQLEL--VGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDE 190 (382)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHH--cCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 97 59999997431 11221111 112233333 244444555667899999999999999999999999999
Q ss_pred CCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCChHH
Q 001055 950 ATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 1017 (1171)
Q Consensus 950 pTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 1017 (1171)
||++||+.++..+++.|.++.+ ++|+|+||||++++.. ||||++|++|++++.|++++++.++...|.
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~ 261 (382)
T TIGR03415 191 PFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYV 261 (382)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHH
Confidence 9999999999999999998754 7999999999999866 999999999999999999999876544444
No 296
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-39 Score=361.38 Aligned_cols=218 Identities=23% Similarity=0.404 Sum_probs=183.3
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEecCCC--ChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKF--GLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-----~~G~I~i~g~~i~~~--~~~ 858 (1171)
.|+++|++++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... ...
T Consensus 20 ~l~~~nl~~~~~~~--~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~ 97 (274)
T PRK14265 20 VFEVEGVKVFYGGF--LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97 (274)
T ss_pred eEEEeeEEEEeCCe--EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhH
Confidence 59999999999753 699999999999999999999999999999999999864 589999999998642 334
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCCC---C---CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFSE---H---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 932 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~---~---~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl 932 (1171)
.+|+.|+|+||++.+|..|+.+|+.+... . .++.+.++++.+++.+.+ ....+..+..||||||||+
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~qrv 170 (274)
T PRK14265 98 KLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEV-------KDKLKEKGTALSGGQQQRL 170 (274)
T ss_pred HHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhh-------HHHhcCCcccCCHHHHHHH
Confidence 56789999999999998899999965321 1 122233444444443322 2234556678999999999
Q ss_pred HHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEe---------CcEEEEe
Q 001055 933 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLD---------SGRVLEY 1002 (1171)
Q Consensus 933 ~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~---------~G~i~~~ 1002 (1171)
+|||||+.+|++|||||||++||+.+...+.+.|+++.+++|||++||+++.+.. ||++++|+ +|++++.
T Consensus 171 ~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~ 250 (274)
T PRK14265 171 CIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEF 250 (274)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEe
Confidence 9999999999999999999999999999999999998777999999999999977 99999997 8999999
Q ss_pred cChhHHhhcC
Q 001055 1003 DTPEELLSNE 1012 (1171)
Q Consensus 1003 g~~~el~~~~ 1012 (1171)
|+++++...+
T Consensus 251 g~~~~~~~~~ 260 (274)
T PRK14265 251 SPTEQMFGSP 260 (274)
T ss_pred CCHHHHHhCC
Confidence 9999997654
No 297
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=9.3e-40 Score=353.92 Aligned_cols=204 Identities=26% Similarity=0.441 Sum_probs=171.4
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCC--CChHHHhhhe
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK--FGLMDLRKIL 864 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~--~~~~~~r~~i 864 (1171)
++++||+++|++. ++++++||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.+
T Consensus 1 l~~~~l~~~~~~~--~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (213)
T cd03262 1 IEIKNLHKSFGDF--HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKV 78 (213)
T ss_pred CEEEEEEEEECCe--EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcc
Confidence 4689999999753 69999999999999999999999999999999999999999999999998853 3445678889
Q ss_pred EEEcCCccccc-ccHHhhccCCC----CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001055 865 GIIPQSPVLFS-GTVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 939 (1171)
Q Consensus 865 ~~v~Q~~~lf~-~tv~~nl~~~~----~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 939 (1171)
+|+||++.+|. .|+++|+.+.. ....++.. ..+.+.++.+ |++...+....+||||||||++|||||+
T Consensus 79 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~ 151 (213)
T cd03262 79 GMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAE-----ERALELLEKV--GLADKADAYPAQLSGGQQQRVAIARALA 151 (213)
T ss_pred eEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHH-----HHHHHHHHHc--CCHhHhhhCccccCHHHHHHHHHHHHHh
Confidence 99999999886 59999996531 11221111 1123344442 5555566677889999999999999999
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhh-cCEEEEEeCcEE
Q 001055 940 RRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRV 999 (1171)
Q Consensus 940 ~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i 999 (1171)
.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++
T Consensus 152 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 152 MNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999998754 7899999999999977 999999999974
No 298
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=5e-39 Score=354.04 Aligned_cols=220 Identities=30% Similarity=0.491 Sum_probs=189.2
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 230 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 230 (1171)
|+++|+++.|+. .++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+.. .+..++
T Consensus 1 i~~~~l~~~~~~-~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKP-DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCC-CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 478999999963 2357999999999999999999999999999999999999999886432 134599
Q ss_pred EEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCE
Q 001055 231 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 309 (1171)
Q Consensus 231 ~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~v 309 (1171)
|++|++++++.||.||+.++.. .....+...++..++.+.++.++.+..+..+..+.+|||||||||+|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 9999999988899999988643 233445556666778888888877777777788899999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHH
Q 001055 310 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKL 384 (1171)
Q Consensus 310 llLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 384 (1171)
+||||||++||+.+++.+.+.+.+.. +|+|+|++||+++++..||++++|++|++++.|+++++.+..+.|..+
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 233 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYL 233 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHH
Confidence 99999999999999999999877664 489999999999999889999999999999999999887766555543
No 299
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-39 Score=361.02 Aligned_cols=220 Identities=22% Similarity=0.344 Sum_probs=184.9
Q ss_pred CccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEecCC----
Q 001055 784 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAK---- 854 (1171)
Q Consensus 784 ~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-----~~G~I~i~g~~i~~---- 854 (1171)
.+.|+++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++..
T Consensus 14 ~~~l~~~~l~~~~~~~--~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~ 91 (265)
T PRK14252 14 QQKSEVNKLNFYYGGY--QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPE 91 (265)
T ss_pred CceEEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccc
Confidence 4569999999999753 699999999999999999999999999999999999985 79999999987742
Q ss_pred CChHHHhhheEEEcCCcccccccHHhhccCCC---CC-----CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCCh
Q 001055 855 FGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSV 926 (1171)
Q Consensus 855 ~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~-----~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSg 926 (1171)
.....+++.++|+||++.+|..|+++|+.+.. .. .++.+.++++.+++.+ ++.+..+....+|||
T Consensus 92 ~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~ 164 (265)
T PRK14252 92 VDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWD-------EVKDRLGDLAFNLSG 164 (265)
T ss_pred cCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCch-------hhhHHHhCCcccCCH
Confidence 23456788899999999999889999996421 11 1233444444443322 233445666788999
Q ss_pred hHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecCh
Q 001055 927 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 1005 (1171)
Q Consensus 927 Gqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~ 1005 (1171)
|||||++|||||+.+|++|||||||++||+.+...+.+.|+++..++|+|+|||+++++.. ||++++|++|++++.|++
T Consensus 165 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~ 244 (265)
T PRK14252 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGAT 244 (265)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999998777899999999999976 999999999999999999
Q ss_pred hHHhhcC
Q 001055 1006 EELLSNE 1012 (1171)
Q Consensus 1006 ~el~~~~ 1012 (1171)
+++....
T Consensus 245 ~~~~~~~ 251 (265)
T PRK14252 245 DTIFIKP 251 (265)
T ss_pred HHHHhCC
Confidence 9987543
No 300
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=3e-39 Score=355.38 Aligned_cols=214 Identities=25% Similarity=0.446 Sum_probs=180.8
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++|++++|++. ++|+|+||++.+||++||+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 i~i~~l~~~~~~~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~ 76 (237)
T TIGR00968 1 IEIANISKRFGSF--QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGF 76 (237)
T ss_pred CEEEEEEEEECCe--eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEE
Confidence 4789999999753 69999999999999999999999999999999999999999999999999876542 4678999
Q ss_pred EcCCcccccc-cHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 867 IPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
+||++.+|.+ |+++|+.+... ...... ...+.+.++.+ ++....+....+|||||+||++|||||+++|
T Consensus 77 ~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrl~laral~~~p 149 (237)
T TIGR00968 77 VFQHYALFKHLTVRDNIAFGLEIRKHPKAKI-----KARVEELLELV--QLEGLGDRYPNQLSGGQRQRVALARALAVEP 149 (237)
T ss_pred EecChhhccCCcHHHHHHhHHHhcCCCHHHH-----HHHHHHHHHHc--CCHhHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 9999999975 99999964221 111111 11234445553 3344455566789999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
+++||||||++||+.+++.+++.|.+... ++|+|++||+++.+.. ||++++|++|++++.|+++++++.
T Consensus 150 ~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 150 QVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 99999999999999999999999998654 6899999999999877 999999999999999999999754
No 301
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-39 Score=360.08 Aligned_cols=220 Identities=26% Similarity=0.405 Sum_probs=183.4
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEecCCCC-hHH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKFG-LMD 859 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-----~~G~I~i~g~~i~~~~-~~~ 859 (1171)
.++++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++...+ ...
T Consensus 21 ~l~i~nl~~~~~~~--~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 21 AMAAVNLTLGFAGK--TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred EEEEeeEEEEECCE--EEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 48999999999753 699999999999999999999999999999999999986 6999999999987653 345
Q ss_pred HhhheEEEcCCcccccccHHhhccCCC---C-CCHHHHHHHHHHhcHHHHHHHc--cCCcchhhhcCCCCCChhHHHHHH
Q 001055 860 LRKILGIIPQSPVLFSGTVRFNLDPFS---E-HSDADLWEALERAHLKDAIRRN--SLGLDAQVSEAGENFSVGQRQLLS 933 (1171)
Q Consensus 860 ~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~-~~~~~i~~~l~~~~~~~~i~~l--p~gl~~~~~~~~~~LSgGqkqrl~ 933 (1171)
+++.++|+||++.+|..|+++|+.+.. . .+..+..+. +.+.++.+ ...+.+.....+.+||||||||++
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~-----~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~ 173 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGV-----AQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLC 173 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHH-----HHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHH
Confidence 788999999999999899999997421 1 122222211 12222222 111123455667889999999999
Q ss_pred HHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcC
Q 001055 934 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012 (1171)
Q Consensus 934 lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~ 1012 (1171)
|||||+.+|+||||||||++||+.+.+.+.+.|+++.+++|||+|||+++.+.. |||+++|++|++++.|+++++.+.+
T Consensus 174 LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 253 (276)
T PRK14271 174 LARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSP 253 (276)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 999999999999999999999999999999999988667999999999999877 9999999999999999999997653
No 302
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=5.1e-39 Score=368.14 Aligned_cols=226 Identities=25% Similarity=0.411 Sum_probs=184.4
Q ss_pred cEEEEeeEEEeCC--CCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CceEEECCEecCCCChHHH
Q 001055 786 SIKFEDVVLRYRP--ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE---RGRILIDGFDIAKFGLMDL 860 (1171)
Q Consensus 786 ~i~~~~vs~~y~~--~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~---~G~I~i~g~~i~~~~~~~~ 860 (1171)
.++++|+++.|+. +..++|+||||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.++..++..++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 4899999999953 2236999999999999999999999999999999999999996 9999999999998887665
Q ss_pred h----hheEEEcCCc--cccc-ccHHhhcc----CCCCCCHHH----HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCC
Q 001055 861 R----KILGIIPQSP--VLFS-GTVRFNLD----PFSEHSDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFS 925 (1171)
Q Consensus 861 r----~~i~~v~Q~~--~lf~-~tv~~nl~----~~~~~~~~~----i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LS 925 (1171)
+ +.|+||||++ .++. .|+.+|+. .+...+..+ +.+.++.+++ +.+ ...++..+.+||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL-------~~~-~~~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKM-------PEA-RKRMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-------CCh-HHHhcCCcccCC
Confidence 3 4799999998 4554 37777663 222222222 2222222222 211 123466778999
Q ss_pred hhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEe
Q 001055 926 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEY 1002 (1171)
Q Consensus 926 gGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~ 1002 (1171)
||||||++|||||+.+|++||+||||++||+.++..+.+.|+++.+ +.|+|+||||++.+.. ||||+||.+|+|++.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998754 7899999999999976 999999999999999
Q ss_pred cChhHHhhcCCChHHHH
Q 001055 1003 DTPEELLSNEGSSFSKM 1019 (1171)
Q Consensus 1003 g~~~el~~~~~~~~~~~ 1019 (1171)
|+++++.+++...|.+.
T Consensus 244 g~~~~i~~~p~~pyt~~ 260 (330)
T PRK09473 244 GNARDVFYQPSHPYSIG 260 (330)
T ss_pred CCHHHHHhCCCCHHHHH
Confidence 99999998766666653
No 303
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-39 Score=356.66 Aligned_cols=210 Identities=27% Similarity=0.407 Sum_probs=178.9
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++|++++|++. ++++|+||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 l~~~~l~~~~~~~--~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 76 (232)
T cd03300 1 IELENVSKFYGGF--VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNT 76 (232)
T ss_pred CEEEeEEEEeCCe--eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEE
Confidence 4689999999753 69999999999999999999999999999999999999999999999999876553 3678999
Q ss_pred EcCCcccccc-cHHhhccCCC---CCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 867 IPQSPVLFSG-TVRFNLDPFS---EHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~---~~~----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
+||++.+|.+ |+++|+.+.. ... +.++.++++.. |++........+||||||||++|||||
T Consensus 77 ~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~lS~G~~qrl~laral 145 (232)
T cd03300 77 VFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLV-----------QLEGYANRKPSQLSGGQQQRVAIARAL 145 (232)
T ss_pred EecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 9999999865 9999986321 111 12233333333 444445555678999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
+++|++|||||||++||+.+.+.+++.|+++.+ ++|||++||+++++.. ||++++|++|++++.|+++++.+.
T Consensus 146 ~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 146 VNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 999999999999999999999999999998753 7999999999999876 999999999999999999888754
No 304
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-39 Score=358.22 Aligned_cols=219 Identities=23% Similarity=0.408 Sum_probs=185.1
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCEecCCC--ChHH
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAKF--GLMD 859 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~-----p~~G~I~i~g~~i~~~--~~~~ 859 (1171)
++++||++.|++. ++|+|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.++|.++... +...
T Consensus 4 l~~~~v~~~~~~~--~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 81 (250)
T PRK14266 4 IEVENLNTYFDDA--HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE 81 (250)
T ss_pred EEEEeEEEEeCCe--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence 7899999999743 69999999999999999999999999999999999875 4899999999998653 3456
Q ss_pred HhhheEEEcCCcccccccHHhhccCCC---CC-CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001055 860 LRKILGIIPQSPVLFSGTVRFNLDPFS---EH-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 931 (1171)
Q Consensus 860 ~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~-~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqr 931 (1171)
+++.++|+||++.+|..|+.+|+.+.. .. .. +.+.++++.+++.+.+. ...+..+.+||||||||
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~qr 154 (250)
T PRK14266 82 LRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK-------DKLDKSALGLSGGQQQR 154 (250)
T ss_pred HhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHH-------HHHhCCcccCCHHHHHH
Confidence 788999999999999889999997421 11 11 22344455555544332 23456677899999999
Q ss_pred HHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 932 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 932 l~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
++|||||+++|+||||||||++||+.+...+.+.|++...++|+|++||+++++.. ||++++|++|++++.|+++++..
T Consensus 155 v~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~~ 234 (250)
T PRK14266 155 LCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFI 234 (250)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999998778999999999999887 99999999999999999999976
Q ss_pred cCCC
Q 001055 1011 NEGS 1014 (1171)
Q Consensus 1011 ~~~~ 1014 (1171)
.+..
T Consensus 235 ~~~~ 238 (250)
T PRK14266 235 NPKD 238 (250)
T ss_pred CCCC
Confidence 5443
No 305
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-39 Score=371.69 Aligned_cols=224 Identities=21% Similarity=0.359 Sum_probs=181.5
Q ss_pred EEEEeeEEEeCC--CCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC----CCCceEEECCEecCCCChHHH
Q 001055 787 IKFEDVVLRYRP--ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE----LERGRILIDGFDIAKFGLMDL 860 (1171)
Q Consensus 787 i~~~~vs~~y~~--~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~----p~~G~I~i~g~~i~~~~~~~~ 860 (1171)
|+++|++++|+. +...+|+||||+|.+||++||+|+||||||||+++|+|+++ |++|+|.++|+++...+...+
T Consensus 4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (330)
T PRK15093 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 899999999953 12359999999999999999999999999999999999986 589999999999988876654
Q ss_pred h----hheEEEcCCcc--ccc-ccHHhhccCC------CC--C-C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcC
Q 001055 861 R----KILGIIPQSPV--LFS-GTVRFNLDPF------SE--H-S----DADLWEALERAHLKDAIRRNSLGLDAQVSEA 920 (1171)
Q Consensus 861 r----~~i~~v~Q~~~--lf~-~tv~~nl~~~------~~--~-~----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~ 920 (1171)
+ +.|+||||++. ++. .||.+|+... .. . . .+.+.+.++..++.+. .......
T Consensus 84 ~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~--------~~~~~~~ 155 (330)
T PRK15093 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDH--------KDAMRSF 155 (330)
T ss_pred HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCCh--------HHHHhCC
Confidence 3 46999999996 333 3888887421 00 0 0 1123333333333210 1234556
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCc
Q 001055 921 GENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSG 997 (1171)
Q Consensus 921 ~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G 997 (1171)
..+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|+++.+ +.|+|+||||++.+.. ||||++|++|
T Consensus 156 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G 235 (330)
T PRK15093 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCG 235 (330)
T ss_pred chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 678999999999999999999999999999999999999999999998764 7899999999999977 9999999999
Q ss_pred EEEEecChhHHhhcCCChHHH
Q 001055 998 RVLEYDTPEELLSNEGSSFSK 1018 (1171)
Q Consensus 998 ~i~~~g~~~el~~~~~~~~~~ 1018 (1171)
+|++.|+++++.+++...|.+
T Consensus 236 ~ive~g~~~~i~~~p~~~y~~ 256 (330)
T PRK15093 236 QTVETAPSKELVTTPHHPYTQ 256 (330)
T ss_pred EEEEECCHHHHHhCCCCHHHH
Confidence 999999999998765555554
No 306
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-39 Score=357.90 Aligned_cols=219 Identities=26% Similarity=0.411 Sum_probs=181.0
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-----CceEEECCEecCC--CChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAK--FGLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~-----~G~I~i~g~~i~~--~~~~ 858 (1171)
.++++||+++|++. ++++|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.++|.++.. .+..
T Consensus 4 ~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 4 LLSAQDVNIYYGDK--QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEEeeeEEEECCE--EeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 38899999999743 6999999999999999999999999999999999999875 8999999999864 2344
Q ss_pred HHhhheEEEcCCcccccc-cHHhhccCCC---CC-CHHHHHHH----HHHhcHHHHHHHccCCcchhhhcCCCCCChhHH
Q 001055 859 DLRKILGIIPQSPVLFSG-TVRFNLDPFS---EH-SDADLWEA----LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQR 929 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~-tv~~nl~~~~---~~-~~~~i~~~----l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqk 929 (1171)
.+|+.++|+||++.+|.. |+.+|+.... .. .+++..+. ++..++.+ ++....+....+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~ 154 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWD-------EVKDRLKTPATGLSGGQQ 154 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcch-------hhhhhhcCCcccCCHHHH
Confidence 678889999999998875 9999996321 11 22222221 22222211 122333456678999999
Q ss_pred HHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHH
Q 001055 930 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1008 (1171)
Q Consensus 930 qrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 1008 (1171)
||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998767999999999999987 999999999999999999999
Q ss_pred hhcCC
Q 001055 1009 LSNEG 1013 (1171)
Q Consensus 1009 ~~~~~ 1013 (1171)
+..+.
T Consensus 235 ~~~~~ 239 (252)
T PRK14272 235 FTNPR 239 (252)
T ss_pred HhCcC
Confidence 86543
No 307
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=3.1e-39 Score=361.35 Aligned_cols=217 Identities=23% Similarity=0.355 Sum_probs=178.3
Q ss_pred cEEEEeeEEEeCCC-------CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChH
Q 001055 786 SIKFEDVVLRYRPE-------LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~-------~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~ 858 (1171)
.|+++||+++|+.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 38999999999621 23699999999999999999999999999999999999999999999999998755555
Q ss_pred HHhhheEEEcCCcc--cccc-cHHhhccCC----CCCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChh
Q 001055 859 DLRKILGIIPQSPV--LFSG-TVRFNLDPF----SEHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVG 927 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~--lf~~-tv~~nl~~~----~~~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgG 927 (1171)
..++.++|+||++. ++.. |+.+|+.+. ..... +++.++++.+++. ....+....+||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G 153 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLL----------PDHASYYPHMLAPG 153 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCC----------hHHHhcCchhcCHH
Confidence 55678999999985 4443 888887531 11111 2233344443331 12234455689999
Q ss_pred HHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecC
Q 001055 928 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 1004 (1171)
Q Consensus 928 qkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~ 1004 (1171)
||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|||++||+++.+.. ||++++|++|++++.|+
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999999998753 7899999999999987 99999999999999999
Q ss_pred hhHHhhcC
Q 001055 1005 PEELLSNE 1012 (1171)
Q Consensus 1005 ~~el~~~~ 1012 (1171)
++++...+
T Consensus 234 ~~~~~~~~ 241 (267)
T PRK15112 234 TADVLASP 241 (267)
T ss_pred HHHHhcCC
Confidence 99998654
No 308
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.3e-40 Score=337.75 Aligned_cols=202 Identities=26% Similarity=0.440 Sum_probs=172.1
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------e
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------I 225 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------~ 225 (1171)
..|+++|+++.||+ ++++|+||||+|++||+++|+|+|||||||||++|.|+.+|++|.+.. +
T Consensus 2 ~~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~ 79 (258)
T COG3638 2 MMIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKL 79 (258)
T ss_pred ceEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHH
Confidence 36999999999984 568999999999999999999999999999999999999999886432 3
Q ss_pred cCcEEEEecCCCCC-cccHHHHHhcCCC------------CCHH---HHHHHHHHcCchHHHhcCCCCCccccCCCCCcc
Q 001055 226 RGTVAYVPQVSWIF-NATVRDNILFGSA------------FEPA---RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNI 289 (1171)
Q Consensus 226 ~~~i~~v~Q~~~l~-~~Tv~eni~~g~~------------~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~L 289 (1171)
+..|||++|.+.|. ..||.+|++.|.- +.++ ....+++..++.+..- .+..+|
T Consensus 80 r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~-----------qra~~L 148 (258)
T COG3638 80 RRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY-----------QRASTL 148 (258)
T ss_pred HHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH-----------HHhccC
Confidence 45699999999996 7899999998742 1222 2334556666655432 233589
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhc-cCCCEEEEEcCCcchhh-hcCEEEEEeCCEEEE
Q 001055 290 SGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKE 367 (1171)
Q Consensus 290 SGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~-~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~ 367 (1171)
||||+|||+|||||+++|+++|-|||+++|||.+.+.+++.+.+.. ..|.|+|+.-|+++... .||||+-|++|+|++
T Consensus 149 SGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivf 228 (258)
T COG3638 149 SGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVF 228 (258)
T ss_pred CcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEE
Confidence 9999999999999999999999999999999999999999888764 45899999999999976 589999999999999
Q ss_pred ecChhHHh
Q 001055 368 EGTFEDLS 375 (1171)
Q Consensus 368 ~g~~~~l~ 375 (1171)
+|+.+++.
T Consensus 229 Dg~~~el~ 236 (258)
T COG3638 229 DGPASELT 236 (258)
T ss_pred eCChhhhh
Confidence 99998853
No 309
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=6e-40 Score=326.69 Aligned_cols=194 Identities=25% Similarity=0.456 Sum_probs=173.9
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------ec
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IR 226 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------~~ 226 (1171)
+|+|+||++.|+.+ +++|+||||+|++||++.|+||||||||||+|+|.++..|+.|.+.. +|
T Consensus 1 mI~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LR 78 (223)
T COG2884 1 MIRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLR 78 (223)
T ss_pred CeeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhh
Confidence 48999999999853 67999999999999999999999999999999999999999986532 45
Q ss_pred CcEEEEecCCCCC-cccHHHHHhcCCC---CC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHH
Q 001055 227 GTVAYVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 298 (1171)
Q Consensus 227 ~~i~~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~ 298 (1171)
++||+|+||.-|. ..||.||+.|... .. .+++..++++++|.+....+|. +||||+||||+
T Consensus 79 R~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRva 147 (223)
T COG2884 79 RQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVA 147 (223)
T ss_pred heeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHH
Confidence 6799999999875 7899999998632 11 2566778999999999998884 89999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhc-CEEEEEeCCEEEEe
Q 001055 299 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQV-DRIILVHEGMVKEE 368 (1171)
Q Consensus 299 LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~-d~i~~l~~G~i~~~ 368 (1171)
||||++.+|++||-||||.+|||.....|++.+.+..+.|.|||+.|||.+.++.+ -|++.+++|+++..
T Consensus 148 IARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d 218 (223)
T COG2884 148 IARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRD 218 (223)
T ss_pred HHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEec
Confidence 99999999999999999999999999999997777788899999999999999987 89999999998864
No 310
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-39 Score=358.38 Aligned_cols=218 Identities=23% Similarity=0.336 Sum_probs=184.6
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEecCCC--ChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKF--GLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-----~~G~I~i~g~~i~~~--~~~ 858 (1171)
.+.++++++.|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++... ...
T Consensus 8 ~~~~~~~~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 8 VMDCKLDKIFYGNF--MAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred eEEEEeEEEEeCCE--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 38999999999753 699999999999999999999999999999999999987 799999999998643 334
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCCC---C---CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFSE---H---SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 932 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~---~---~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl 932 (1171)
.+|+.++|+||++.+|..|+.+|+.+... . ..+.+.++++.+++.+.+. ...++...+|||||+||+
T Consensus 86 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~G~~qrv 158 (261)
T PRK14263 86 VVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVK-------DKLKVSGLSLSGGQQQRL 158 (261)
T ss_pred hhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHHHHH
Confidence 56788999999999998899999974321 1 1234455555555433322 223456678999999999
Q ss_pred HHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEe--------CcEEEEec
Q 001055 933 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLD--------SGRVLEYD 1003 (1171)
Q Consensus 933 ~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~--------~G~i~~~g 1003 (1171)
+|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++++.. ||||++|+ +|++++.|
T Consensus 159 ~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g 238 (261)
T PRK14263 159 CIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMG 238 (261)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeC
Confidence 9999999999999999999999999999999999998777899999999999876 99999996 89999999
Q ss_pred ChhHHhhcC
Q 001055 1004 TPEELLSNE 1012 (1171)
Q Consensus 1004 ~~~el~~~~ 1012 (1171)
+++++.+..
T Consensus 239 ~~~~~~~~~ 247 (261)
T PRK14263 239 PTAQIFQNP 247 (261)
T ss_pred CHHHHHhCC
Confidence 999997653
No 311
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-39 Score=359.71 Aligned_cols=220 Identities=25% Similarity=0.348 Sum_probs=182.3
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC--------CceEEECCEecCCCChH
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE--------RGRILIDGFDIAKFGLM 858 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~--------~G~I~i~g~~i~~~~~~ 858 (1171)
++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|+ +|+|.++|.++...+..
T Consensus 2 l~~~nl~~~~~~~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~ 79 (272)
T PRK13547 2 LTADHLHVARRHR--AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAP 79 (272)
T ss_pred eEEEEEEEEECCE--eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHH
Confidence 7899999999653 6999999999999999999999999999999999999998 99999999999877777
Q ss_pred HHhhheEEEcCCcc-cccccHHhhccCCCC-C-CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001055 859 DLRKILGIIPQSPV-LFSGTVRFNLDPFSE-H-SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 935 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~-lf~~tv~~nl~~~~~-~-~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 935 (1171)
.+++.++|+||++. +|..|+++|+.+... . .............+.+.++. .|+++..+....+||||||||++||
T Consensus 80 ~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~l~~~~~~~~~~LSgG~~qrv~la 157 (272)
T PRK13547 80 RLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALAL--AGATALVGRDVTTLSGGELARVQFA 157 (272)
T ss_pred HHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHH--cCcHhhhcCCcccCCHHHHHHHHHH
Confidence 78888999999986 567799999964311 0 00000000001112333443 3566666777789999999999999
Q ss_pred HHhc---------cCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEec
Q 001055 936 RALL---------RRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 936 rall---------~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
|||+ .+|++|||||||++||+.+...+.+.|+++.+ ++|||+|||+++.+.. ||++++|++|++++.|
T Consensus 158 ral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g 237 (272)
T PRK13547 158 RVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHG 237 (272)
T ss_pred HHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEec
Confidence 9999 59999999999999999999999999998753 6899999999999976 9999999999999999
Q ss_pred ChhHHhh
Q 001055 1004 TPEELLS 1010 (1171)
Q Consensus 1004 ~~~el~~ 1010 (1171)
+++++..
T Consensus 238 ~~~~~~~ 244 (272)
T PRK13547 238 APADVLT 244 (272)
T ss_pred CHHHHcC
Confidence 9988864
No 312
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=4.7e-39 Score=359.40 Aligned_cols=219 Identities=21% Similarity=0.355 Sum_probs=178.6
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CceEEECCEecCCC-----Ch
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE---RGRILIDGFDIAKF-----GL 857 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~---~G~I~i~g~~i~~~-----~~ 857 (1171)
.++++||+++|++. ++|+|+||+|.+||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +.
T Consensus 4 ~l~~~nl~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 4 IIRVEKLAKTFNQH--QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred EEEEeeEEEEeCCe--EEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 38999999999743 6999999999999999999999999999999999999986 49999999988653 23
Q ss_pred HHHhhheEEEcCCcccccc-cHHhhccCCCC-CCH--H---HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 858 MDLRKILGIIPQSPVLFSG-TVRFNLDPFSE-HSD--A---DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 858 ~~~r~~i~~v~Q~~~lf~~-tv~~nl~~~~~-~~~--~---~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
..+++.++|+||++.+|.. |+.+|+.+... ..+ . ..........+.+.++.+ |++...+....+|||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~q 159 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRV--GMVHFAHQRVSTLSGGQQQ 159 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHc--CCHHHHhCCccccCHHHHH
Confidence 4567789999999988874 99999964211 000 0 000000011233444442 4544556667789999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhH
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 1007 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~e 1007 (1171)
|++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 160 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~ 239 (262)
T PRK09984 160 RVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQ 239 (262)
T ss_pred HHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999998753 7899999999999766 99999999999999999988
Q ss_pred H
Q 001055 1008 L 1008 (1171)
Q Consensus 1008 l 1008 (1171)
+
T Consensus 240 ~ 240 (262)
T PRK09984 240 F 240 (262)
T ss_pred h
Confidence 6
No 313
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=3.1e-39 Score=357.14 Aligned_cols=215 Identities=22% Similarity=0.289 Sum_probs=175.6
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC--CCCCceEEECCEecCCCChHHH-hhh
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV--ELERGRILIDGFDIAKFGLMDL-RKI 863 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~--~p~~G~I~i~g~~i~~~~~~~~-r~~ 863 (1171)
|+++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...+.... +..
T Consensus 1 l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (243)
T TIGR01978 1 LKIKDLHVSVEDK--EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAG 78 (243)
T ss_pred CeEeeEEEEECCE--EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccc
Confidence 4789999999743 6999999999999999999999999999999999994 7999999999999987776554 445
Q ss_pred eEEEcCCcccccc-cHHhhccCCCC----------CCHHHHHHHHHHhcHHHHHHHccCCcch-hhhcCCC-CCChhHHH
Q 001055 864 LGIIPQSPVLFSG-TVRFNLDPFSE----------HSDADLWEALERAHLKDAIRRNSLGLDA-QVSEAGE-NFSVGQRQ 930 (1171)
Q Consensus 864 i~~v~Q~~~lf~~-tv~~nl~~~~~----------~~~~~i~~~l~~~~~~~~i~~lp~gl~~-~~~~~~~-~LSgGqkq 930 (1171)
++|+||++.+|.. |+++|+..... ....+.. ..+.+.++.+ |++. ..+.... .|||||||
T Consensus 79 i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~LS~G~~q 151 (243)
T TIGR01978 79 LFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFL-----KLLKAKLALL--GMDEEFLNRSVNEGFSGGEKK 151 (243)
T ss_pred eEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHH-----HHHHHHHHHc--CCchhhcccccccCcCHHHHH
Confidence 9999999998876 89998853210 0101111 1223344432 4432 2344444 59999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh--cCEEEEEeCcEEEEecChhH
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID--CDRILLLDSGRVLEYDTPEE 1007 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~--~d~i~vl~~G~i~~~g~~~e 1007 (1171)
||+|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|||+|||+++.+.. ||++++|++|++++.|++++
T Consensus 152 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (243)
T TIGR01978 152 RNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVEL 231 (243)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHH
Confidence 9999999999999999999999999999999999999875 37899999999999976 79999999999999999886
Q ss_pred Hhh
Q 001055 1008 LLS 1010 (1171)
Q Consensus 1008 l~~ 1010 (1171)
+..
T Consensus 232 ~~~ 234 (243)
T TIGR01978 232 AKE 234 (243)
T ss_pred hcc
Confidence 653
No 314
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-39 Score=373.15 Aligned_cols=211 Identities=24% Similarity=0.408 Sum_probs=178.9
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCC----ChHHHhh
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF----GLMDLRK 862 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~----~~~~~r~ 862 (1171)
|++ |++++|++. .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... .....++
T Consensus 2 l~~-~l~k~~~~~---~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~ 76 (352)
T PRK11144 2 LEL-NFKQQLGDL---CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR 76 (352)
T ss_pred eEE-EEEEEeCCE---EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhC
Confidence 667 999999642 23 99999999999999999999999999999999999999999999998642 2334678
Q ss_pred heEEEcCCcccccc-cHHhhccCCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 863 ILGIIPQSPVLFSG-TVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 863 ~i~~v~Q~~~lf~~-tv~~nl~~~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
.++|+||++.+|.. |+++|+.+... ...+++.+.++.. |++...+....+||||||||++|||||+.
T Consensus 77 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgGq~qRvalaraL~~ 145 (352)
T PRK11144 77 RIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALL-----------GIEPLLDRYPGSLSGGEKQRVAIGRALLT 145 (352)
T ss_pred CEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHc-----------CCchhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 89999999999964 99999975322 1223344444443 44444555667899999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCC
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 1013 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~ 1013 (1171)
+|++|||||||++||+.+++.+++.|+++.+ ++|+|+||||++++.. ||+|++|++|++++.|+++++..++.
T Consensus 146 ~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 146 APELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221 (352)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence 9999999999999999999999999998754 6899999999999877 99999999999999999999987654
No 315
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-39 Score=358.29 Aligned_cols=219 Identities=27% Similarity=0.418 Sum_probs=183.3
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-----CceEEECCEecCC--CChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-----RGRILIDGFDIAK--FGLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~-----~G~I~i~g~~i~~--~~~~ 858 (1171)
.|+++||+++|+.. .+|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.++.. .+..
T Consensus 7 ~l~~~nl~~~~~~~--~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 7 AIKVNNLSFYYDTQ--KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred eEEEeeEEEEeCCe--eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence 59999999999643 6999999999999999999999999999999999999985 8999999998853 2344
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCC---C-CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFS---E-HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~-~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
.+|+.++|+||++.+|..|+++|+.+.. . ... +.+.++++..++.+++ +...++.+.+|||||||
T Consensus 85 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~q 157 (261)
T PRK14258 85 RLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEI-------KHKIHKSALDLSGGQQQ 157 (261)
T ss_pred HhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchh-------hhHhcCCcccCCHHHHH
Confidence 6788899999999998899999996421 1 111 2233444444433222 22345667789999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeC-----cEEEEe
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDS-----GRVLEY 1002 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~-----G~i~~~ 1002 (1171)
|++|||||+++|+||||||||++||+.+...+.+.|+++. .++|+|+|||+++++.. ||+|++|++ |++++.
T Consensus 158 rv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 237 (261)
T PRK14258 158 RLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEF 237 (261)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEe
Confidence 9999999999999999999999999999999999999864 47999999999999987 999999999 999999
Q ss_pred cChhHHhhcCC
Q 001055 1003 DTPEELLSNEG 1013 (1171)
Q Consensus 1003 g~~~el~~~~~ 1013 (1171)
|+++++...+.
T Consensus 238 ~~~~~~~~~~~ 248 (261)
T PRK14258 238 GLTKKIFNSPH 248 (261)
T ss_pred CCHHHHHhCCC
Confidence 99999976543
No 316
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=100.00 E-value=2.1e-38 Score=398.93 Aligned_cols=102 Identities=27% Similarity=0.450 Sum_probs=92.3
Q ss_pred Ccch-hhhcCCCCCChhHHHHHHHHHHhccCC---CEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhh
Q 001055 912 GLDA-QVSEAGENFSVGQRQLLSLSRALLRRS---KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTII 986 (1171)
Q Consensus 912 gl~~-~~~~~~~~LSgGqkqrl~lArall~~p---~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~ 986 (1171)
|+.. ..++...+|||||||||.|||+|+++| +++||||||+|||+.+...+++.|+++. .+.|||+|+|+++.+.
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 4543 356777899999999999999999999 9999999999999999999999999875 4789999999999998
Q ss_pred hcCEEEEE------eCcEEEEecChhHHhhcCC
Q 001055 987 DCDRILLL------DSGRVLEYDTPEELLSNEG 1013 (1171)
Q Consensus 987 ~~d~i~vl------~~G~i~~~g~~~el~~~~~ 1013 (1171)
.||+|++| ++|+|++.|+++++.+.+.
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~ 930 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEA 930 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcc
Confidence 89999999 7999999999999987654
No 317
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=3.4e-38 Score=353.16 Aligned_cols=234 Identities=35% Similarity=0.635 Sum_probs=194.7
Q ss_pred HHHHHhhccccccCCCCCCCCCCCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCC
Q 001055 138 RMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP 217 (1171)
Q Consensus 138 Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~ 217 (1171)
.+.+.+..+.++. ...+.+.+.+.|+++|+++.+ +++|+++||+|++||+++|+|+||||||||+++|+|+++|
T Consensus 16 ~~~~~~~~~~~~~-~~~~~~~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p 89 (282)
T cd03291 16 GFGELLEKAKQEN-NDRKHSSDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEP 89 (282)
T ss_pred HHHHHHhcccccc-cccccCCCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4555555433221 112223445579999999962 4699999999999999999999999999999999999999
Q ss_pred CCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHH
Q 001055 218 VSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 297 (1171)
Q Consensus 218 ~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv 297 (1171)
++|.+. +.+.|+|++|++.+++.||+||+.++......++...++.+++.+.++.++.+..+.++..+..||||||||+
T Consensus 90 ~~G~I~-i~g~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv 168 (282)
T cd03291 90 SEGKIK-HSGRISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARI 168 (282)
T ss_pred CCcEEE-ECCEEEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHH
Confidence 987654 5667999999999988899999998754444455566777888888888888877788888899999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001055 298 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 298 ~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
+|||||+.+|++|||||||++||+.+++.+.+.+++...++.|+|++||+++++..||++++|++|+++..|+++++...
T Consensus 169 ~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 248 (282)
T cd03291 169 SLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL 248 (282)
T ss_pred HHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999999999999987655433457899999999999988999999999999999999888754
Q ss_pred c
Q 001055 378 G 378 (1171)
Q Consensus 378 ~ 378 (1171)
.
T Consensus 249 ~ 249 (282)
T cd03291 249 R 249 (282)
T ss_pred c
Confidence 3
No 318
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-39 Score=356.02 Aligned_cols=219 Identities=23% Similarity=0.369 Sum_probs=181.7
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--C---CCceEEECCEecCCC--ChH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE--L---ERGRILIDGFDIAKF--GLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~--p---~~G~I~i~g~~i~~~--~~~ 858 (1171)
.|+++||+++|+. +++|+|+||+|.+||++||+|+||||||||+++|+|+++ | ++|+|.++|.++... +..
T Consensus 5 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 5 IITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred eEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 3899999999974 369999999999999999999999999999999999975 5 589999999988642 334
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCC---CC-CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFS---EH-SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~-~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
.+++.++|+||++.+|..|+++|+.+.. .. .+ +.+.+.++.+++.. ++....+....+|||||||
T Consensus 83 ~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~i~~~~~~~~~~LS~Gq~q 155 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWD-------EVKDHLHESALSLSGGQQQ 155 (252)
T ss_pred HhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcc-------chhhHHhcCcccCCHHHHH
Confidence 5678899999999999889999986421 11 11 12223333333221 2234456667889999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|++.++.
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999988667899999999999876 9999999999999999999987
Q ss_pred hcCC
Q 001055 1010 SNEG 1013 (1171)
Q Consensus 1010 ~~~~ 1013 (1171)
..+.
T Consensus 236 ~~~~ 239 (252)
T PRK14255 236 LNPK 239 (252)
T ss_pred cCCC
Confidence 6543
No 319
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=6.2e-39 Score=347.22 Aligned_cols=201 Identities=23% Similarity=0.375 Sum_probs=170.2
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++||+++|+. .++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ .+++.++|
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSM 74 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEE
Confidence 368999999962 568999999999999999999999999999999999999999999999987543 35778999
Q ss_pred EcCCcccccc-cHHhhccCC-CC-C-----CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 867 IPQSPVLFSG-TVRFNLDPF-SE-H-----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~-~~-~-----~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
+||++.+|.. |+.+|+.+. .. . .+.++.++++..++.+ .......+||||||||++||||+
T Consensus 75 v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~laral 143 (213)
T TIGR01277 75 LFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIAD-----------YLDRLPEQLSGGQRQRVALARCL 143 (213)
T ss_pred EeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHH-----------HhhCCcccCCHHHHHHHHHHHHH
Confidence 9999998865 999998632 11 1 1223444445444443 34444568999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecC
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 1004 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~ 1004 (1171)
+.+|++|||||||++||+.+...+.+.|++..+ ++|+|+|||+++++.. ||++++|++|++++.|.
T Consensus 144 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999998753 7899999999999876 99999999999998875
No 320
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-38 Score=362.69 Aligned_cols=218 Identities=27% Similarity=0.467 Sum_probs=182.7
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCceEEECCEecCCC--Ch
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-----LERGRILIDGFDIAKF--GL 857 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~-----p~~G~I~i~g~~i~~~--~~ 857 (1171)
..|+++||+++|++. ++|+++||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++... +.
T Consensus 44 ~~l~i~nl~~~~~~~--~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~ 121 (305)
T PRK14264 44 AKLSVEDLDVYYGDD--HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121 (305)
T ss_pred ceEEEEEEEEEeCCe--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccH
Confidence 459999999999753 69999999999999999999999999999999999986 6899999999998643 34
Q ss_pred HHHhhheEEEcCCcccccccHHhhccCCCCC--------------------CHHHHHHHHHHhcHHHHHHHccCCcchhh
Q 001055 858 MDLRKILGIIPQSPVLFSGTVRFNLDPFSEH--------------------SDADLWEALERAHLKDAIRRNSLGLDAQV 917 (1171)
Q Consensus 858 ~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~--------------------~~~~i~~~l~~~~~~~~i~~lp~gl~~~~ 917 (1171)
..+|+.++|+||++.+|..|+++|+.+.... .++.+.++++.+++. .++.+..
T Consensus 122 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~ 194 (305)
T PRK14264 122 VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALW-------DEVNDRL 194 (305)
T ss_pred HHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCc-------hhhhHHh
Confidence 5678899999999999988999999742100 011223333333221 2334455
Q ss_pred hcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEE-EEEe
Q 001055 918 SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRI-LLLD 995 (1171)
Q Consensus 918 ~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i-~vl~ 995 (1171)
+..+.+||||||||++|||||+++|+||||||||+|||+.+...+.+.|+++.++.|+|+|||+++.+.. ||++ ++|+
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~ 274 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLT 274 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEec
Confidence 6777899999999999999999999999999999999999999999999998777899999999999877 9997 5679
Q ss_pred CcEEEEecChhHHhhc
Q 001055 996 SGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 996 ~G~i~~~g~~~el~~~ 1011 (1171)
+|++++.|+++++.+.
T Consensus 275 ~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 275 GGELVEYDDTDKIFEN 290 (305)
T ss_pred CCEEEEeCCHHHHHhC
Confidence 9999999999998754
No 321
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.7e-39 Score=351.22 Aligned_cols=209 Identities=28% Similarity=0.458 Sum_probs=177.9
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++|++++|++ ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 1 l~~~~l~~~~~~---~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~ 75 (235)
T cd03299 1 LKVENLSKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISY 75 (235)
T ss_pred CeeEeEEEEeCC---ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEE
Confidence 468999999964 38999999999999999999999999999999999999999999999999876554 3678999
Q ss_pred EcCCccccc-ccHHhhccCCC---CCCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 867 IPQSPVLFS-GTVRFNLDPFS---EHSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 867 v~Q~~~lf~-~tv~~nl~~~~---~~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
+||++.+|. .|+.+|+.+.. .... +++.++++.. |+....+....+||||||||++||||+
T Consensus 76 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrl~laral 144 (235)
T cd03299 76 VPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEML-----------GIDHLLNRKPETLSGGEQQRVAIARAL 144 (235)
T ss_pred EeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CChhHHhcCcccCCHHHHHHHHHHHHH
Confidence 999998885 59999996321 1111 1223333333 444445555678999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
+++|++|+|||||++||+.+.+.+++.|++... ++|+|++||+++++.. ||+|++|++|++++.|+++++.+.
T Consensus 145 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 145 VVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred HcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 999999999999999999999999999998653 7999999999999876 999999999999999999988754
No 322
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-39 Score=356.09 Aligned_cols=206 Identities=23% Similarity=0.340 Sum_probs=172.1
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... +..++|
T Consensus 2 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~ 74 (255)
T PRK11248 2 LQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGV 74 (255)
T ss_pred EEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEE
Confidence 789999999965 3699999999999999999999999999999999999999999999999988642 245899
Q ss_pred EcCCccccc-ccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 867 IPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 867 v~Q~~~lf~-~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
+||++.+|. .|+++|+.+.. .....+. ...+.++++.+ |++........+||||||||++|||||+.+|
T Consensus 75 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--gl~~~~~~~~~~LSgGq~qrl~laral~~~p 147 (255)
T PRK11248 75 VFQNEGLLPWRNVQDNVAFGLQLAGVEKMQR-----LEIAHQMLKKV--GLEGAEKRYIWQLSGGQRQRVGIARALAANP 147 (255)
T ss_pred EeCCCccCCCCcHHHHHHhHHHHcCCCHHHH-----HHHHHHHHHHc--CChhHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999998886 59999996421 1111111 11233444443 4444555666789999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEe--CcEEEEecChh
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLD--SGRVLEYDTPE 1006 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~--~G~i~~~g~~~ 1006 (1171)
++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|+ +|++++.++.+
T Consensus 148 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 148 QLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 9999999999999999999999999864 37999999999999877 99999998 59999987754
No 323
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-38 Score=354.41 Aligned_cols=219 Identities=26% Similarity=0.450 Sum_probs=181.4
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECC------EecCCCChHH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG------FDIAKFGLMD 859 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g------~~i~~~~~~~ 859 (1171)
.++++|++++|++. ++|+|+||+|.+||++||+|+||||||||+++|+|+++|++|+|.++| .++...+...
T Consensus 10 ~i~~~~~~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 10 VFNISRLYLYINDK--AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred heeeeeEEEecCCc--eeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence 49999999999753 699999999999999999999999999999999999999997666665 5666666667
Q ss_pred HhhheEEEcCCcccccc-cHHhhccCCC---CC-CHHH----HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 860 LRKILGIIPQSPVLFSG-TVRFNLDPFS---EH-SDAD----LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 860 ~r~~i~~v~Q~~~lf~~-tv~~nl~~~~---~~-~~~~----i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
+|+.++|+||++.+|.+ |+.+|+.+.. .. .+++ +.++++..++...+ ....+..+..|||||||
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~q 160 (257)
T PRK14246 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPASQLSGGQQQ 160 (257)
T ss_pred HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCcccCCHHHHH
Confidence 88899999999998875 9999997421 11 1222 22233333322111 12345566789999999
Q ss_pred HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 931 LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
|++|||||+.+|++|||||||++||+.++..+.+.|.++.+++|+|+|||+++++.. ||++++|++|++++.|+++++.
T Consensus 161 rl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 161 RLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240 (257)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999999988767999999999999966 9999999999999999999998
Q ss_pred hcCC
Q 001055 1010 SNEG 1013 (1171)
Q Consensus 1010 ~~~~ 1013 (1171)
+.+.
T Consensus 241 ~~~~ 244 (257)
T PRK14246 241 TSPK 244 (257)
T ss_pred hCCC
Confidence 6543
No 324
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=4.7e-39 Score=368.34 Aligned_cols=205 Identities=26% Similarity=0.397 Sum_probs=173.0
Q ss_pred cEEEEeeEEEcCCCC-CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------e
Q 001055 162 AISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------I 225 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~-~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------~ 225 (1171)
+|+++|++++|+.+. .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+.. .
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 378999999996322 347999999999999999999999999999999999999999886421 2
Q ss_pred cCcEEEEecCCCCC-cccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHH
Q 001055 226 RGTVAYVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 297 (1171)
Q Consensus 226 ~~~i~~v~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv 297 (1171)
++.|||+||++.++ ..||+||+.++.. .+. ++..+.++..++.+..+..| .+|||||||||
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----------~~LSgGqkQRV 149 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-----------SNLSGGQKQRV 149 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHH
Confidence 44699999999987 5899999987521 121 23445666677665544433 58999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHh
Q 001055 298 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLS 375 (1171)
Q Consensus 298 ~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 375 (1171)
+|||||+.+|++|||||||++||+.+...+++.+.+...+ |.|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 150 ~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 150 AIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999987776544 8999999999999865 8999999999999999999987
Q ss_pred hc
Q 001055 376 NN 377 (1171)
Q Consensus 376 ~~ 377 (1171)
.+
T Consensus 230 ~~ 231 (343)
T TIGR02314 230 SH 231 (343)
T ss_pred cC
Confidence 54
No 325
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.1e-39 Score=333.51 Aligned_cols=171 Identities=50% Similarity=0.798 Sum_probs=159.7
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++|++++|++...++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 46899999997542369999999999999999999999999999999999999999999999999988777778889999
Q ss_pred EcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 001055 867 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 946 (1171)
Q Consensus 867 v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLl 946 (1171)
+||++.+|+.|+.+|+ ||||||||++|||||+.+|++||
T Consensus 81 ~~~~~~~~~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~~p~lll 119 (171)
T cd03228 81 VPQDPFLFSGTIRENI-----------------------------------------LSGGQRQRIAIARALLRDPPILI 119 (171)
T ss_pred EcCCchhccchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999888998876 99999999999999999999999
Q ss_pred EecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcE
Q 001055 947 LDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGR 998 (1171)
Q Consensus 947 LDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~ 998 (1171)
|||||++||+.+...+.+.|+++.+++|+|++||+++.+..||++++|++|+
T Consensus 120 lDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 120 LDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999998877799999999999998899999999985
No 326
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=4.6e-39 Score=317.35 Aligned_cols=200 Identities=27% Similarity=0.452 Sum_probs=174.5
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee----------cCcEEEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI----------RGTVAYV 232 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~----------~~~i~~v 232 (1171)
|.+++|.|+|... ==..+++|++||+++|+|||||||||||++++|+..|.+|.+... .+.++++
T Consensus 2 l~L~~V~~~y~~~-----~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSml 76 (231)
T COG3840 2 LALDDVRFSYGHL-----PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML 76 (231)
T ss_pred ccccceEEeeCcc-----eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhh
Confidence 6788999999632 235789999999999999999999999999999999999876542 2359999
Q ss_pred ecCCCCC-cccHHHHHhcCCCC-------CHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhc
Q 001055 233 PQVSWIF-NATVRDNILFGSAF-------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 304 (1171)
Q Consensus 233 ~Q~~~l~-~~Tv~eni~~g~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~ 304 (1171)
+|++.|| ..||.+||.+|... +.++++.++...++....+++|. +|||||||||||||+|+
T Consensus 77 FQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARclv 145 (231)
T COG3840 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCLV 145 (231)
T ss_pred hhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHHHh
Confidence 9999999 68999999998431 34677888899999999999995 89999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHhhc-cCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhcc
Q 001055 305 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNG 378 (1171)
Q Consensus 305 ~~~~vllLDEpts~LD~~~~~~l~~~l~~~~-~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 378 (1171)
++-+|++||||+|+|||.-+..+...+.+.. .++.|+++|||.++.+.. +|+++++++|+|.++|+..++....
T Consensus 146 R~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 146 REQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK 221 (231)
T ss_pred ccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence 9999999999999999999999887666543 358999999999999876 6999999999999999998887653
No 327
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.8e-39 Score=323.97 Aligned_cols=212 Identities=27% Similarity=0.443 Sum_probs=184.8
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+.+|+|++-.++ .+|+++||+++|||++||+||||||||||+|.|+|.+.|++|++.++|.+++.+++.++.++-++
T Consensus 2 i~a~nls~~~~Gr--~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raV 79 (259)
T COG4559 2 IRAENLSYSLAGR--RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAV 79 (259)
T ss_pred eeeeeeEEEeecc--eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhh
Confidence 7889999988665 69999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCccc-ccccHHhhccCCC-------CCCHHH--HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001055 867 IPQSPVL-FSGTVRFNLDPFS-------EHSDAD--LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 936 (1171)
Q Consensus 867 v~Q~~~l-f~~tv~~nl~~~~-------~~~~~~--i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 936 (1171)
+||+..+ |.-||+|-+.++. +..+++ ..+++.++++..+-.+ .-..|||||||||.|||
T Consensus 80 lpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R-----------~y~~LSGGEqQRVqlAR 148 (259)
T COG4559 80 LPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGR-----------DYRTLSGGEQQRVQLAR 148 (259)
T ss_pred cccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhcc-----------chhhcCchHHHHHHHHH
Confidence 9999865 7889999775431 111222 5666777766655443 33579999999999999
Q ss_pred Hhcc------CCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHH
Q 001055 937 ALLR------RSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1008 (1171)
Q Consensus 937 all~------~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 1008 (1171)
.|.+ ++++|+||||||+||+.....+++..+++.. ++.|+.|-||++.... ||||++|.+||+++.|+|++.
T Consensus 149 vLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~v 228 (259)
T COG4559 149 VLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDV 228 (259)
T ss_pred HHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHh
Confidence 9986 3469999999999999999999999999764 7899999999999877 999999999999999999999
Q ss_pred hhc
Q 001055 1009 LSN 1011 (1171)
Q Consensus 1009 ~~~ 1011 (1171)
+..
T Consensus 229 lt~ 231 (259)
T COG4559 229 LTD 231 (259)
T ss_pred cCH
Confidence 864
No 328
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=1.3e-38 Score=347.35 Aligned_cols=204 Identities=25% Similarity=0.402 Sum_probs=173.2
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++||+++|++. ++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ++.++|
T Consensus 1 l~l~~v~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~ 74 (223)
T TIGR03740 1 LETKNLSKRFGKQ--TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGS 74 (223)
T ss_pred CEEEeEEEEECCE--EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEE
Confidence 4689999999753 6999999999999999999999999999999999999999999999999875321 357999
Q ss_pred EcCCccccc-ccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 867 IPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 867 v~Q~~~lf~-~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
+||++.+|. .|+++|+.++. ...+.++.+.++..++ +...+....+||||||||++||||++.+|
T Consensus 75 ~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~~rv~laral~~~p 143 (223)
T TIGR03740 75 LIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDL-----------TNTGKKKAKQFSLGMKQRLGIAIALLNHP 143 (223)
T ss_pred EcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCC-----------cHHHhhhHhhCCHHHHHHHHHHHHHhcCC
Confidence 999998886 59999986421 2223344444544444 33344455789999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhH
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEE 1007 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~e 1007 (1171)
++|||||||++||+.+.+.+++.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|++.+
T Consensus 144 ~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 144 KLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999999999875 47899999999999876 99999999999999998764
No 329
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=2.8e-38 Score=348.32 Aligned_cols=215 Identities=32% Similarity=0.531 Sum_probs=185.2
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 230 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 230 (1171)
++++|+++.|+...++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+.. .+..++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 46899999997433457999999999999999999999999999999999999999886532 123599
Q ss_pred EEecCCCCCcccHHHHHhcCCCC-CHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCE
Q 001055 231 YVPQVSWIFNATVRDNILFGSAF-EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 309 (1171)
Q Consensus 231 ~v~Q~~~l~~~Tv~eni~~g~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~v 309 (1171)
|++|++.+++.||+||+.++... ..++....++.+++.+.++.++.+..+..+....+|||||||||+|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999998888999999986432 33445556667778887788887777777788899999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcc
Q 001055 310 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNG 378 (1171)
Q Consensus 310 llLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 378 (1171)
+||||||++||+.+++.+++.+.... +|+|+|++||+++++..||++++|++|++++.|+.+++....
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 228 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQK 228 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcC
Confidence 99999999999999999999876655 789999999999999889999999999999999988776543
No 330
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=2.5e-38 Score=351.74 Aligned_cols=215 Identities=25% Similarity=0.390 Sum_probs=175.6
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC----CCceEEECCEecCCCChHHHh
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL----ERGRILIDGFDIAKFGLMDLR 861 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p----~~G~I~i~g~~i~~~~~~~~r 861 (1171)
.++++||+++| + .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... ...+
T Consensus 4 ~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~ 78 (254)
T PRK10418 4 QIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRG 78 (254)
T ss_pred EEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--cccc
Confidence 48999999999 3 2699999999999999999999999999999999999999 999999999988632 2234
Q ss_pred hheEEEcCCcc-ccc--ccHHhhccC----CC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001055 862 KILGIIPQSPV-LFS--GTVRFNLDP----FS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 933 (1171)
Q Consensus 862 ~~i~~v~Q~~~-lf~--~tv~~nl~~----~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~ 933 (1171)
+.++|+||++. .|. .|+.+|+.. .. ...++++.+.++..++.+ ..+..+....+||||||||++
T Consensus 79 ~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~~~~~~~~~~~LS~Gq~qrv~ 150 (254)
T PRK10418 79 RKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLEN--------AARVLKLYPFEMSGGMLQRMM 150 (254)
T ss_pred ceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCC--------hhhhhhcCCcccCHHHHHHHH
Confidence 67999999985 343 377776532 11 112233444444433321 112456677889999999999
Q ss_pred HHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 934 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 934 lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|||++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 151 laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 230 (254)
T PRK10418 151 IALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230 (254)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhh
Confidence 99999999999999999999999999999999998753 7899999999999876 99999999999999999999976
Q ss_pred cCC
Q 001055 1011 NEG 1013 (1171)
Q Consensus 1011 ~~~ 1013 (1171)
...
T Consensus 231 ~~~ 233 (254)
T PRK10418 231 APK 233 (254)
T ss_pred CCC
Confidence 543
No 331
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-38 Score=330.79 Aligned_cols=206 Identities=28% Similarity=0.409 Sum_probs=173.5
Q ss_pred CcEEEEeeEEEcCCCC-CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ec
Q 001055 161 PAISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IR 226 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~-~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~ 226 (1171)
+.++++|+++.|+.+. ..++|++|||+|.+||++||+|+||||||||.++|+|+.+|++|.+.. ..
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 3689999999997431 125999999999999999999999999999999999999999986543 23
Q ss_pred CcEEEEecCCCC---CcccHHHHHhcCCC-----CCHHHHHHHHHHcCchHH-HhcCCCCCccccCCCCCccChHHHHHH
Q 001055 227 GTVAYVPQVSWI---FNATVRDNILFGSA-----FEPARYEKAIDVTSLQHD-LDLLPGGDVTEIGERGVNISGGQKQRV 297 (1171)
Q Consensus 227 ~~i~~v~Q~~~l---~~~Tv~eni~~g~~-----~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~i~~~g~~LSGGqrqRv 297 (1171)
+.|-+|+|||.- +..||++-|.-+.. ....+..++++..+|... +++.| .+|||||||||
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRi 150 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRI 150 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHH
Confidence 459999999964 35699988864321 123456777888888654 45555 48999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHh
Q 001055 298 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLS 375 (1171)
Q Consensus 298 ~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 375 (1171)
||||||..+|++||||||||+||+.....|++.+.+..+ .+-|.|+||||+..+.+ ||||++|++|++++.++.+++.
T Consensus 151 aIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~ 230 (252)
T COG1124 151 AIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230 (252)
T ss_pred HHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhh
Confidence 999999999999999999999999999999998776543 47899999999999986 7999999999999999999987
Q ss_pred hc
Q 001055 376 NN 377 (1171)
Q Consensus 376 ~~ 377 (1171)
+.
T Consensus 231 ~~ 232 (252)
T COG1124 231 SH 232 (252)
T ss_pred cC
Confidence 66
No 332
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1.9e-38 Score=352.86 Aligned_cols=219 Identities=23% Similarity=0.389 Sum_probs=180.8
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEe-----cCCCChHHH
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFD-----IAKFGLMDL 860 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~-----i~~~~~~~~ 860 (1171)
.++++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +...+....
T Consensus 3 ~l~~~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (253)
T TIGR02323 3 LLQVSGLSKSYGGG--KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAER 80 (253)
T ss_pred eEEEeeeEEEeCCc--eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHH
Confidence 38999999999753 68999999999999999999999999999999999999999999999987 666555432
Q ss_pred ----hhheEEEcCCcc--cc-cccHHhhccC----CCCCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhH
Q 001055 861 ----RKILGIIPQSPV--LF-SGTVRFNLDP----FSEHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQ 928 (1171)
Q Consensus 861 ----r~~i~~v~Q~~~--lf-~~tv~~nl~~----~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~LSgGq 928 (1171)
++.++|+||++. ++ ..|+.+|+.. +......+. ...+.++++.+ |++ +..+.....|||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~LSgG~ 153 (253)
T TIGR02323 81 RRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEV--EIDPTRIDDLPRAFSGGM 153 (253)
T ss_pred HHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHc--CCChhhhhcCchhcCHHH
Confidence 457999999984 22 3477777642 111111111 13345667765 443 46677788999999
Q ss_pred HHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecCh
Q 001055 929 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 1005 (1171)
Q Consensus 929 kqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~ 1005 (1171)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||++++|++|++++.|++
T Consensus 154 ~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~ 233 (253)
T TIGR02323 154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLT 233 (253)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999988643 7899999999999986 999999999999999999
Q ss_pred hHHhhcCC
Q 001055 1006 EELLSNEG 1013 (1171)
Q Consensus 1006 ~el~~~~~ 1013 (1171)
+++.....
T Consensus 234 ~~~~~~~~ 241 (253)
T TIGR02323 234 DQVLDDPQ 241 (253)
T ss_pred HHHhcCCC
Confidence 99876543
No 333
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.5e-38 Score=368.80 Aligned_cols=213 Identities=24% Similarity=0.381 Sum_probs=178.0
Q ss_pred eeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCC----hHHHhhheEE
Q 001055 791 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG----LMDLRKILGI 866 (1171)
Q Consensus 791 ~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~----~~~~r~~i~~ 866 (1171)
|++++|++. .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ....++.++|
T Consensus 4 ~l~~~~~~~---~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGDF---SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECCE---EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 899999643 35 999999999999999999999999999999999999999999999986532 2346778999
Q ss_pred EcCCcccccc-cHHhhccCCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001055 867 IPQSPVLFSG-TVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 944 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 944 (1171)
+||++.+|.. |+++|+.+... ....+. ...+.++++. .|++...+....+||||||||++|||||+.+|++
T Consensus 80 v~q~~~l~~~~tv~enl~~~~~~~~~~~~-----~~~~~~~l~~--~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~l 152 (354)
T TIGR02142 80 VFQEARLFPHLSVRGNLRYGMKRARPSER-----RISFERVIEL--LGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRL 152 (354)
T ss_pred EecCCccCCCCcHHHHHHHHhhccChhHH-----HHHHHHHHHH--cCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 9999999975 99999975321 111110 1123344444 2555666667789999999999999999999999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCC
Q 001055 945 LVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 1014 (1171)
Q Consensus 945 LlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~ 1014 (1171)
|||||||++||+.+++.+.+.|+++.+ ++|+|+|||+++++.. ||+|++|++|++++.|+++++...+..
T Consensus 153 llLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~ 225 (354)
T TIGR02142 153 LLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDL 225 (354)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCc
Confidence 999999999999999999999998753 6899999999999877 999999999999999999999876543
No 334
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.7e-38 Score=339.98 Aligned_cols=201 Identities=54% Similarity=0.964 Sum_probs=177.9
Q ss_pred EEEEeeEEEcCCCCC--CCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCc
Q 001055 163 ISIRNGYFSWDSKAE--RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFN 240 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~--~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~ 240 (1171)
++++|++++|+++.+ +++|+++||+|++|++++|+||||||||||+++|+|+++|++|.+. +.+.|+|++|+|.+++
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~-~~g~i~~~~q~~~l~~ 79 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVS-VPGSIAYVSQEPWIQN 79 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEE-EcCEEEEEecCchhcc
Confidence 478999999974321 3799999999999999999999999999999999999999998764 4568999999999999
Q ss_pred ccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCC
Q 001055 241 ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALD 320 (1171)
Q Consensus 241 ~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD 320 (1171)
.|++||+.++...+.++..++.+.+++.+.++..|.+..+.++....+||||||||++|||||+.+|+++||||||++||
T Consensus 80 ~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD 159 (204)
T cd03250 80 GTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVD 159 (204)
T ss_pred CcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 99999999875555556667778888999999999888888888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-hccCCCEEEEEcCCcchhhhcCEEEEEeCCE
Q 001055 321 AHVGRQVFDRCIR-GELSGKTRVLVTNQLHFLSQVDRIILVHEGM 364 (1171)
Q Consensus 321 ~~~~~~l~~~l~~-~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~ 364 (1171)
+.+.+++++.++. ....++|+|++||+++.+..+|++++|++|+
T Consensus 160 ~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 160 AHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999886543 4345799999999999998899999999884
No 335
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-38 Score=346.84 Aligned_cols=214 Identities=33% Similarity=0.536 Sum_probs=185.5
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 230 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 230 (1171)
|+++|++++|+.. ++++++++||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999632 247999999999999999999999999999999999999999886532 124599
Q ss_pred EEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCE
Q 001055 231 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 309 (1171)
Q Consensus 231 ~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~v 309 (1171)
|++|++.+++.||+||+.++.. .....+....+.+++.+.++.++.+..+..+....+||||||||++|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999988899999998643 234455666777788888888877777777888899999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcc
Q 001055 310 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNG 378 (1171)
Q Consensus 310 llLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 378 (1171)
+||||||++||+.+.+.+.+.+.+.. +++|+|++||+++++..||++++|++|++++.|+.+++....
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 227 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLM-KNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQG 227 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcC
Confidence 99999999999999999999776654 589999999999999889999999999999999988876543
No 336
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=3.9e-38 Score=352.52 Aligned_cols=223 Identities=24% Similarity=0.377 Sum_probs=184.8
Q ss_pred EEEEeeEEEeCC-------CCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChH-
Q 001055 787 IKFEDVVLRYRP-------ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM- 858 (1171)
Q Consensus 787 i~~~~vs~~y~~-------~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~- 858 (1171)
|+++||+++|+. ..+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++.
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 899999999973 124799999999999999999999999999999999999999999999999998876653
Q ss_pred --HHhhheEEEcCCcc--cc-cccHHhhccCC----CCCCHHHHHHHHHHhcHHHHHHHccCCcch-hhhcCCCCCChhH
Q 001055 859 --DLRKILGIIPQSPV--LF-SGTVRFNLDPF----SEHSDADLWEALERAHLKDAIRRNSLGLDA-QVSEAGENFSVGQ 928 (1171)
Q Consensus 859 --~~r~~i~~v~Q~~~--lf-~~tv~~nl~~~----~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~-~~~~~~~~LSgGq 928 (1171)
.+++.++|+||++. ++ ..|+.+|+.+. ..... ......+.+.++.+ |+++ ..+.....|||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~-----~~~~~~~~~~l~~~--gl~~~~~~~~~~~LS~Ge 156 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDK-----AERLARASEMLRAV--DLDDSVLDKRPPQLSGGQ 156 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCH-----HHHHHHHHHHHHHc--CCChhHhhCCCccCChHH
Confidence 46788999999983 44 35899987421 01111 11122345556553 6653 5667788999999
Q ss_pred HHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecCh
Q 001055 929 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 1005 (1171)
Q Consensus 929 kqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~ 1005 (1171)
|||++|||||+.+|+||||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~ 236 (268)
T PRK10419 157 LQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPV 236 (268)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCCh
Confidence 9999999999999999999999999999999999999998753 7899999999999986 999999999999999999
Q ss_pred hHHhhcCCChHH
Q 001055 1006 EELLSNEGSSFS 1017 (1171)
Q Consensus 1006 ~el~~~~~~~~~ 1017 (1171)
+++... ...|.
T Consensus 237 ~~~~~~-~~~~~ 247 (268)
T PRK10419 237 GDKLTF-SSPAG 247 (268)
T ss_pred hhccCC-CCHHH
Confidence 998753 44444
No 337
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.9e-38 Score=345.93 Aligned_cols=218 Identities=32% Similarity=0.569 Sum_probs=188.2
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 230 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 230 (1171)
++++|++++|+. ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. .+..++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 468999999963 356999999999999999999999999999999999999999886532 123599
Q ss_pred EEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCE
Q 001055 231 YVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 309 (1171)
Q Consensus 231 ~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~v 309 (1171)
|++|++++++.||+||+.++.. .....+...++.+++.+.+..++.+..+.++....+||||||||++|||||+.+|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999988643 233445566777788888888888888888888899999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHH
Q 001055 310 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQK 383 (1171)
Q Consensus 310 llLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 383 (1171)
+||||||++||+.+...+.+.+..... |+|+|++||+++++..||++++|++|++++.|+.+++......++.
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~ 231 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAE 231 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHH
Confidence 999999999999999999998776655 8999999999999988999999999999999998887665444433
No 338
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.4e-38 Score=345.58 Aligned_cols=212 Identities=29% Similarity=0.503 Sum_probs=185.7
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 229 (1171)
.|+++|++++|+. .+++++|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..+
T Consensus 2 ~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 4789999999963 346999999999999999999999999999999999999999886532 13459
Q ss_pred EEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCC
Q 001055 230 AYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 308 (1171)
Q Consensus 230 ~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~ 308 (1171)
+|++|++.++..||+||+.++.. ....++...++.+++.+.++.++.+..+.++....+|||||||||+|||||+.+|+
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~ 159 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPK 159 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999988899999998743 23455666777788888888888777777888889999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhh
Q 001055 309 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 309 vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
++||||||++||+.+++++++.+.... +++|+|+|||+++++..||++++|++|++++.|+.+++..
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 226 (229)
T cd03254 160 ILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226 (229)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHh
Confidence 999999999999999999999876654 5899999999999998899999999999999988877653
No 339
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-38 Score=333.34 Aligned_cols=172 Identities=32% Similarity=0.518 Sum_probs=158.2
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCC--hHHHhhhe
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG--LMDLRKIL 864 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~--~~~~r~~i 864 (1171)
|+++|++++|++. ++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.+
T Consensus 1 i~~~~l~~~~~~~--~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 78 (178)
T cd03229 1 LELKNVSKRYGQK--TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78 (178)
T ss_pred CEEEEEEEEECCe--EEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcE
Confidence 4789999999653 6999999999999999999999999999999999999999999999999998765 55678899
Q ss_pred EEEcCCcccccc-cHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001055 865 GIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 943 (1171)
Q Consensus 865 ~~v~Q~~~lf~~-tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~ 943 (1171)
+|+||++.+|.. |+++|+.+. ||||||||++|||||+++|+
T Consensus 79 ~~~~q~~~~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~~p~ 120 (178)
T cd03229 79 GMVFQDFALFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAMDPD 120 (178)
T ss_pred EEEecCCccCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHCCCC
Confidence 999999988854 999998642 99999999999999999999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcE
Q 001055 944 ILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGR 998 (1171)
Q Consensus 944 iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~ 998 (1171)
+|||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|+
T Consensus 121 llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 121 VLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999998764 5899999999999986 99999999985
No 340
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-38 Score=359.53 Aligned_cols=211 Identities=23% Similarity=0.403 Sum_probs=172.5
Q ss_pred CCCcEEEEeeEEEcCCCC--CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------
Q 001055 159 GLPAISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------ 224 (1171)
Q Consensus 159 ~~~~i~~~~~s~~~~~~~--~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------ 224 (1171)
+.+.|+++|++|.|+... ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+..
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence 345799999999997421 247999999999999999999999999999999999999999885421
Q ss_pred ----------------ecCcEEEEecCC--CCCcccHHHHHhcCCC---CCHH----HHHHHHHHcCchHHHhcCCCCCc
Q 001055 225 ----------------IRGTVAYVPQVS--WIFNATVRDNILFGSA---FEPA----RYEKAIDVTSLQHDLDLLPGGDV 279 (1171)
Q Consensus 225 ----------------~~~~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~~----~~~~~~~~~~l~~~~~~~~~~~~ 279 (1171)
.++.||||+|+| .+|+.||+|||.|+.. .+.+ ++.+.++..++..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------- 167 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDD---------- 167 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCCh----------
Confidence 134599999998 6788899999998732 1222 2223333444321
Q ss_pred cccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhh-hcCEEE
Q 001055 280 TEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRII 358 (1171)
Q Consensus 280 ~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~ 358 (1171)
...+..+.+|||||||||+|||||+.+|++|||||||++||+.+++++.+.+.....+|+|+|+||||++++. .||||+
T Consensus 168 ~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~ 247 (320)
T PRK13631 168 SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVI 247 (320)
T ss_pred hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE
Confidence 1234556799999999999999999999999999999999999999999987666556899999999999875 589999
Q ss_pred EEeCCEEEEecChhHHhhcch
Q 001055 359 LVHEGMVKEEGTFEDLSNNGE 379 (1171)
Q Consensus 359 ~l~~G~i~~~g~~~~l~~~~~ 379 (1171)
+|++|++++.|+++++.....
T Consensus 248 vl~~G~i~~~g~~~~~~~~~~ 268 (320)
T PRK13631 248 VMDKGKILKTGTPYEIFTDQH 268 (320)
T ss_pred EEECCEEEEeCCHHHHhcCHH
Confidence 999999999999998876543
No 341
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-38 Score=365.34 Aligned_cols=203 Identities=28% Similarity=0.420 Sum_probs=174.0
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEEE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 231 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~ 231 (1171)
.|+++|++++|+. ++++|+|+||++++||+++|+|||||||||||++|+|+++|++|.+.. .++.|||
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 80 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAM 80 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 4899999999942 357999999999999999999999999999999999999999886532 1246999
Q ss_pred EecCCCCC-cccHHHHHhcCCC---CC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHh
Q 001055 232 VPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 303 (1171)
Q Consensus 232 v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL 303 (1171)
|+|++.+| ..||+|||.|+.. .+ .+++.++++..++.+..+..+ .+|||||||||+|||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalARAL 149 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGRAI 149 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHHHH
Confidence 99999998 5799999998742 12 134556677778776665554 48999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 001055 304 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 304 ~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
+.+|++|||||||++||+.+++.+.+.+.+..++ |.|+|+||||++++. .||+|++|++|++++.|+++++.++
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~ 225 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEK 225 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhC
Confidence 9999999999999999999999999987765544 899999999999876 5899999999999999999988654
No 342
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.8e-38 Score=345.44 Aligned_cols=206 Identities=25% Similarity=0.390 Sum_probs=172.0
Q ss_pred EEEEeeEEEeCCC--CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChH---HHh
Q 001055 787 IKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM---DLR 861 (1171)
Q Consensus 787 i~~~~vs~~y~~~--~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~---~~r 861 (1171)
++++|+++.|+++ .+++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++...++. ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 7899999999642 14699999999999999999999999999999999999999999999999999766643 357
Q ss_pred hheEEEcCCccccc-ccHHhhccCCC----CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001055 862 KILGIIPQSPVLFS-GTVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 936 (1171)
Q Consensus 862 ~~i~~v~Q~~~lf~-~tv~~nl~~~~----~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 936 (1171)
+.++|+||++.+|. .|+.+|+.+.. .....+.. ..+.+.++.+ |++........+||||||||++|||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrv~lar 154 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEAR-----ERARAMLEAV--GLGDHLDYYPHNLSGGQKQRVAIAR 154 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHH-----HHHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHH
Confidence 88999999999887 59999996432 11222111 1123344443 4555556666789999999999999
Q ss_pred HhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhhcCEEEEEeCcEE
Q 001055 937 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRV 999 (1171)
Q Consensus 937 all~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i 999 (1171)
||+++|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++....||+|++|++|++
T Consensus 155 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 155 ALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999998763 7999999999997666999999999986
No 343
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-38 Score=348.56 Aligned_cols=201 Identities=28% Similarity=0.438 Sum_probs=166.3
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------ecC
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IRG 227 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------~~~ 227 (1171)
|+++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+.
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 468999999963 57999999999999999999999999999999999999999885421 134
Q ss_pred cEEEEecCCCCCc-ccHHHHHhcCCC----CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHH
Q 001055 228 TVAYVPQVSWIFN-ATVRDNILFGSA----FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 298 (1171)
Q Consensus 228 ~i~~v~Q~~~l~~-~Tv~eni~~g~~----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~ 298 (1171)
.|+|++|++.++. .||+||+.++.. .+. +++.++++..++.+..+ ....+|||||||||+
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAED-----------LYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHHH
Confidence 5999999998875 699999987521 122 22344455555543332 334689999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001055 299 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 299 LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
|||||+.+|+++||||||++||+.++..+++.+.+... .|+|+|+||||++++.. ||++++|++|++++.|+++++..
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999999998776554 48999999999999875 89999999999999999887754
Q ss_pred c
Q 001055 377 N 377 (1171)
Q Consensus 377 ~ 377 (1171)
.
T Consensus 227 ~ 227 (235)
T cd03261 227 S 227 (235)
T ss_pred C
Confidence 3
No 344
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-38 Score=331.22 Aligned_cols=170 Identities=31% Similarity=0.575 Sum_probs=156.4
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++|++++|++. ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (173)
T cd03230 1 IEVRNLSKRYGKK--TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGY 77 (173)
T ss_pred CEEEEEEEEECCe--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEE
Confidence 4689999999753 6999999999999999999999999999999999999999999999999987654 567788999
Q ss_pred EcCCcccccc-cHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 001055 867 IPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 945 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iL 945 (1171)
+||++.+|.. |+++|+. ||||||||++|||||+.+|++|
T Consensus 78 ~~q~~~~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~~p~il 117 (173)
T cd03230 78 LPEEPSLYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLHDPELL 117 (173)
T ss_pred EecCCccccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHcCCCEE
Confidence 9999988875 9998862 9999999999999999999999
Q ss_pred EEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEE
Q 001055 946 VLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRV 999 (1171)
Q Consensus 946 lLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i 999 (1171)
||||||++||+.+.+.+.+.|++.. ++.|+|++||+.+++.. ||++++|++|++
T Consensus 118 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 118 ILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999875 36899999999999886 999999999974
No 345
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=6e-38 Score=341.71 Aligned_cols=206 Identities=27% Similarity=0.413 Sum_probs=183.4
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 230 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 230 (1171)
++++|++++|+.. ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..++
T Consensus 3 l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (221)
T cd03244 3 IEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRIS 81 (221)
T ss_pred EEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEE
Confidence 7899999999742 357999999999999999999999999999999999999999886532 234699
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEE
Q 001055 231 YVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 310 (1171)
Q Consensus 231 ~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vl 310 (1171)
|++|++.+++.||+||+.+......+++.++++..++.+.+..++.+..+..+..+.+||||||||++|||||+.+|+++
T Consensus 82 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ll 161 (221)
T cd03244 82 IIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKIL 161 (221)
T ss_pred EECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999888999999876555566677788888999888888888888888889999999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecC
Q 001055 311 IFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 370 (1171)
Q Consensus 311 lLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~ 370 (1171)
||||||++||+.+++++++.+.+.. +++|+|++||+++++..||++++|++|++++.|+
T Consensus 162 llDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 162 VLDEATASVDPETDALIQKTIREAF-KDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred EEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 9999999999999999999776654 4689999999999998899999999999988764
No 346
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=4.3e-38 Score=348.11 Aligned_cols=200 Identities=29% Similarity=0.450 Sum_probs=171.9
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| +..++
T Consensus 4 ~l~~~~l~~~~~~~--~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~ 70 (251)
T PRK09544 4 LVSLENVSVSFGQR--RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIG 70 (251)
T ss_pred EEEEeceEEEECCc--eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEE
Confidence 38999999999753 699999999999999999999999999999999999999999999986 24699
Q ss_pred EEcCCccccc---ccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 866 IIPQSPVLFS---GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 866 ~v~Q~~~lf~---~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
|+||++.++. .|+.+|+.......++++.++++..++.+++ +.....||||||||++|||||+.+|
T Consensus 71 ~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgGq~qrv~laral~~~p 139 (251)
T PRK09544 71 YVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLI-----------DAPMQKLSGGETQRVLLARALLNRP 139 (251)
T ss_pred EeccccccccccChhHHHHHhccccccHHHHHHHHHHcCChHHH-----------hCChhhCCHHHHHHHHHHHHHhcCC
Confidence 9999997764 3788887543333455566666666655443 3345689999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
++|||||||++||+.+...+++.|+++.+ ++|+|+|||+++++.. ||+|++|++ ++++.|+++++..
T Consensus 140 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~ 209 (251)
T PRK09544 140 QLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL 209 (251)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC
Confidence 99999999999999999999999988753 7899999999999876 999999965 7999999999864
No 347
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=2e-38 Score=346.53 Aligned_cols=212 Identities=25% Similarity=0.386 Sum_probs=171.6
Q ss_pred EEEEeeEEEeCCC--CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCceEEECCEecCCCChHHHh
Q 001055 787 IKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE---LERGRILIDGFDIAKFGLMDLR 861 (1171)
Q Consensus 787 i~~~~vs~~y~~~--~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~---p~~G~I~i~g~~i~~~~~~~~r 861 (1171)
+.++||+++|++. .+++++|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 6799999999764 2579999999999999999999999999999999999999 99999999999875 34577
Q ss_pred hheEEEcCCcccccc-cHHhhccCCCCC-CHHHHHHHHHHhcHHH-HHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 862 KILGIIPQSPVLFSG-TVRFNLDPFSEH-SDADLWEALERAHLKD-AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 862 ~~i~~v~Q~~~lf~~-tv~~nl~~~~~~-~~~~i~~~l~~~~~~~-~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
+.++|+||++.+|.. |+++|+.+.... ......+........+ .++. .++....+.....|||||+||++|||||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRD--LALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHh--hcchhhhcccccCcCHHHHHHHHHHHHH
Confidence 889999999999976 999999742110 0000000111111122 2333 2444455566788999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecCh-hhhhh-cCEEEEEeCcEEEEec
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRL-NTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~-~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
+.+|++|||||||++||+.+...+.+.|++.. .++|+|++||++ +.+.. ||++++|++|++++.|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999875 478999999998 46655 9999999999998865
No 348
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-38 Score=342.22 Aligned_cols=201 Identities=24% Similarity=0.387 Sum_probs=168.4
Q ss_pred eeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCC----hHHHhhheEE
Q 001055 791 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG----LMDLRKILGI 866 (1171)
Q Consensus 791 ~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~----~~~~r~~i~~ 866 (1171)
||+++|++. .+ |+||+|++ |++||+||||||||||+++|+|+++|++|+|.++|.++.... ....++.++|
T Consensus 5 ~l~~~~~~~--~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 79 (214)
T cd03297 5 DIEKRLPDF--TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGL 79 (214)
T ss_pred eeeEecCCe--ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEE
Confidence 899999764 34 99999999 999999999999999999999999999999999999886432 2346778999
Q ss_pred EcCCccccc-ccHHhhccCCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001055 867 IPQSPVLFS-GTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 944 (1171)
Q Consensus 867 v~Q~~~lf~-~tv~~nl~~~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 944 (1171)
+||++.+|. .|+++|+.+... ..... ....+.++++.+ |++...+....+||||||||++|||||+.+|++
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 152 (214)
T cd03297 80 VFQQYALFPHLNVRENLAFGLKRKRNRE-----DRISVDELLDLL--GLDHLLNRYPAQLSGGEKQRVALARALAAQPEL 152 (214)
T ss_pred EecCCccCCCCCHHHHHHHHHhhCCHHH-----HHHHHHHHHHHc--CCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999885 499999964321 11111 112234455553 566666777789999999999999999999999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEec
Q 001055 945 LVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 945 LlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++++.. ||++++|++|++++.|
T Consensus 153 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 153 LLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999998753 7899999999999876 9999999999998765
No 349
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-38 Score=343.45 Aligned_cols=228 Identities=25% Similarity=0.440 Sum_probs=185.7
Q ss_pred EEEEeeEEEeCCCC--CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-C----CCceEEECCEecCCCChHH
Q 001055 787 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-L----ERGRILIDGFDIAKFGLMD 859 (1171)
Q Consensus 787 i~~~~vs~~y~~~~--~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~-p----~~G~I~i~g~~i~~~~~~~ 859 (1171)
++++|++..|.... ..+++||||+|++||++||||.|||||||+.+.|+|+++ | .+|+|.++|.|+..++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 68899999996432 369999999999999999999999999999999999998 4 5799999999999999875
Q ss_pred Hh----hheEEEcCCcc-cccc--cHHhhc----cCCCCC-C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCC
Q 001055 860 LR----KILGIIPQSPV-LFSG--TVRFNL----DPFSEH-S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 923 (1171)
Q Consensus 860 ~r----~~i~~v~Q~~~-lf~~--tv~~nl----~~~~~~-~----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~ 923 (1171)
+| +.|++|||+|. -++- ||.+.+ ...... . .+...+.++.+++.+ .+...+..+.+
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~--------~~~~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPD--------PERRLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCC--------HHHHHhhCCcc
Confidence 43 35999999984 2322 555443 211111 1 123444455544432 12244566778
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEE
Q 001055 924 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVL 1000 (1171)
Q Consensus 924 LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~ 1000 (1171)
||||||||+.||-||+.+|++||.||||++||...++.|.+.|+++.+ +.|+|+||||+..+.. ||||+||..|+|+
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 999999999999999999999999999999999999999999999874 7999999999999887 9999999999999
Q ss_pred EecChhHHhhcCCChHHHHHHh
Q 001055 1001 EYDTPEELLSNEGSSFSKMVQS 1022 (1171)
Q Consensus 1001 ~~g~~~el~~~~~~~~~~~~~~ 1022 (1171)
|.|+.+++..++...|.+..-.
T Consensus 234 E~g~~~~i~~~P~HPYT~~Ll~ 255 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTRGLLN 255 (316)
T ss_pred EeCCHHHHhcCCCChHHHHHHH
Confidence 9999999999888888765543
No 350
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.2e-37 Score=346.62 Aligned_cols=223 Identities=23% Similarity=0.368 Sum_probs=192.6
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCc
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 228 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 228 (1171)
..|+++|++++|+.. ++++|+++||++++||+++|+|+||||||||+++|+|+++|++|.+.. .+..
T Consensus 18 ~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~ 96 (257)
T cd03288 18 GEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSR 96 (257)
T ss_pred ceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhh
Confidence 469999999999742 357999999999999999999999999999999999999999886532 2346
Q ss_pred EEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCC
Q 001055 229 VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 308 (1171)
Q Consensus 229 i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~ 308 (1171)
|+|++|++++|+.||+||+........+.+..+++..++.+.++.++.+..+.++..+.+||||||||++|||||+.+|+
T Consensus 97 i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ 176 (257)
T cd03288 97 LSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSS 176 (257)
T ss_pred EEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999889999997653333455667777888888899998888888999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcc-hHHHHHH
Q 001055 309 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNG-ELFQKLM 385 (1171)
Q Consensus 309 vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~~~~~~ 385 (1171)
++||||||++||+.+...+++.+.+. .++.|+|++||+++.+..||||++|++|++++.|+++++.... +.+..++
T Consensus 177 llllDEPt~gLD~~~~~~l~~~l~~~-~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 253 (257)
T cd03288 177 ILIMDEATASIDMATENILQKVVMTA-FADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253 (257)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHh-cCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHH
Confidence 99999999999999999998876654 3589999999999999889999999999999999999887643 3444443
No 351
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-38 Score=362.87 Aligned_cols=203 Identities=26% Similarity=0.392 Sum_probs=172.5
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEE
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVA 230 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~ 230 (1171)
+.|+++|++++|++ +++|+|+||++++||+++|+|||||||||||++|+|+++|++|.+.. .++.||
T Consensus 5 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 81 (351)
T PRK11432 5 NFVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDIC 81 (351)
T ss_pred cEEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 46999999999963 56999999999999999999999999999999999999999986532 134699
Q ss_pred EEecCCCCC-cccHHHHHhcCCC---CC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHH
Q 001055 231 YVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 302 (1171)
Q Consensus 231 ~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAra 302 (1171)
||+|++.+| ..||+|||.|+.. .+ .+++.++++..++.+..+.. ..+|||||||||+||||
T Consensus 82 ~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~-----------~~~LSgGq~QRVaLARa 150 (351)
T PRK11432 82 MVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRY-----------VDQISGGQQQRVALARA 150 (351)
T ss_pred EEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHHH
Confidence 999999998 5799999998732 11 23445566666765544433 35899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 001055 303 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 303 L~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
|+.+|++|||||||++||+.++.++.+.+.+..++ |.|+|+||||++++. .+|||++|++|+++..|+++++..+
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999987765443 899999999999975 5899999999999999999988654
No 352
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=100.00 E-value=5.4e-37 Score=399.35 Aligned_cols=211 Identities=24% Similarity=0.318 Sum_probs=148.7
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHH---------HHhcCCCCCCc--------eEEEC
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLN---------TLFRIVELERG--------RILID 848 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~---------~l~g~~~p~~G--------~I~i~ 848 (1171)
.++++|++. ..|+|+||+|++||+++|+|+||||||||++ .|.|...+..+ -|.||
T Consensus 600 ~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~id 672 (1809)
T PRK00635 600 TLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHIT 672 (1809)
T ss_pred eEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEec
Confidence 378888752 3799999999999999999999999999999 55564333111 13444
Q ss_pred CEecCCCCh----H------HHh---------hheE-----EEcCC------------------c---------------
Q 001055 849 GFDIAKFGL----M------DLR---------KILG-----IIPQS------------------P--------------- 871 (1171)
Q Consensus 849 g~~i~~~~~----~------~~r---------~~i~-----~v~Q~------------------~--------------- 871 (1171)
-.++..-+. . .+| +..| +.++. +
T Consensus 673 Qspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~ 752 (1809)
T PRK00635 673 RDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFL 752 (1809)
T ss_pred CCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccC
Confidence 333322111 1 233 1122 22221 0
Q ss_pred -----ccccc-cHHhhccCCCC-C-----CHHHHHHHHHHhcHHHHHHHccCCcchh-hhcCCCCCChhHHHHHHHHHHh
Q 001055 872 -----VLFSG-TVRFNLDPFSE-H-----SDADLWEALERAHLKDAIRRNSLGLDAQ-VSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 872 -----~lf~~-tv~~nl~~~~~-~-----~~~~i~~~l~~~~~~~~i~~lp~gl~~~-~~~~~~~LSgGqkqrl~lAral 938 (1171)
..+.+ ||.|+|.+... . ...++.+. + +.++. .|+... .++...+||||||||++|||+|
T Consensus 753 ~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~-----l-~~L~~--vGL~~l~l~q~~~tLSGGE~QRV~LAraL 824 (1809)
T PRK00635 753 PQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEK-----I-HALCS--LGLDYLPLGRPLSSLSGGEIQRLKLAYEL 824 (1809)
T ss_pred HHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHH-----H-HHHHH--cCCcchhhcCccccCCHHHHHHHHHHHHH
Confidence 12222 66666654211 0 01111111 1 23333 466654 6778889999999999999999
Q ss_pred c---cCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhhcCEEEEEe------CcEEEEecChhHH
Q 001055 939 L---RRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLLD------SGRVLEYDTPEEL 1008 (1171)
Q Consensus 939 l---~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~vl~------~G~i~~~g~~~el 1008 (1171)
+ .+|++|||||||+|||+.+.+.+.+.|+++. .+.|||+|||+++.+..||+|++|. +|++++.|+++++
T Consensus 825 ~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel 904 (1809)
T PRK00635 825 LAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEEL 904 (1809)
T ss_pred hhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHH
Confidence 8 6999999999999999999999999999875 4789999999999996699999996 7999999999999
Q ss_pred hhc
Q 001055 1009 LSN 1011 (1171)
Q Consensus 1009 ~~~ 1011 (1171)
...
T Consensus 905 ~~~ 907 (1809)
T PRK00635 905 IHL 907 (1809)
T ss_pred Hhc
Confidence 753
No 353
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=7.7e-38 Score=334.94 Aligned_cols=185 Identities=25% Similarity=0.381 Sum_probs=162.6
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCceEEECCEecCCCChHHH-hhh
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI--VELERGRILIDGFDIAKFGLMDL-RKI 863 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~--~~p~~G~I~i~g~~i~~~~~~~~-r~~ 863 (1171)
++++|++++|++. ++++|+||++.+||++||+|+||||||||+++|+|+ ++|++|+|.++|.++...+.... |..
T Consensus 1 l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (200)
T cd03217 1 LEIKDLHVSVGGK--EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLG 78 (200)
T ss_pred CeEEEEEEEeCCE--EeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCc
Confidence 4689999999743 699999999999999999999999999999999999 58999999999999988776554 456
Q ss_pred eEEEcCCcccccc-cHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 864 LGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 864 i~~v~Q~~~lf~~-tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
++|+||++.+|.+ |+++++ .. ...+||||||||++|||||+.+|
T Consensus 79 i~~v~q~~~~~~~~~~~~~l------------------------~~-----------~~~~LS~G~~qrv~laral~~~p 123 (200)
T cd03217 79 IFLAFQYPPEIPGVKNADFL------------------------RY-----------VNEGFSGGEKKRNEILQLLLLEP 123 (200)
T ss_pred EEEeecChhhccCccHHHHH------------------------hh-----------ccccCCHHHHHHHHHHHHHhcCC
Confidence 9999999988865 555544 01 12469999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhh--hcCEEEEEeCcEEEEecChhHHh
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTII--DCDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~--~~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
++|||||||++||+.+...+++.|++..+ ++|+|++||+++.+. .||++++|++|++++.| +.|+.
T Consensus 124 ~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 124 DLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 99999999999999999999999998754 789999999999998 59999999999999999 45454
No 354
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-38 Score=351.00 Aligned_cols=209 Identities=28% Similarity=0.409 Sum_probs=171.1
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++||+++|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ...++.++
T Consensus 6 ~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~ 81 (272)
T PRK15056 6 GIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVA 81 (272)
T ss_pred eEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEE
Confidence 38999999999633 369999999999999999999999999999999999999999999999998742 11234699
Q ss_pred EEcCCccc---ccccHHhhccCC--C------CCC---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001055 866 IIPQSPVL---FSGTVRFNLDPF--S------EHS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 931 (1171)
Q Consensus 866 ~v~Q~~~l---f~~tv~~nl~~~--~------~~~---~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqr 931 (1171)
|+||++.+ +..++++|+... . ... ++.+.++++.. |+....+....+||||||||
T Consensus 82 ~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgG~~qr 150 (272)
T PRK15056 82 YVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARV-----------DMVEFRHRQIGELSGGQKKR 150 (272)
T ss_pred EeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHc-----------CChhHhcCCcccCCHHHHHH
Confidence 99999865 344788887531 0 000 11233333443 34444455667899999999
Q ss_pred HHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 932 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 932 l~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|||++||+++.+.. ||+++++ +|++++.|+++++.
T Consensus 151 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 151 VFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 999999999999999999999999999999999999875 47899999999999876 9999777 89999999999875
Q ss_pred h
Q 001055 1010 S 1010 (1171)
Q Consensus 1010 ~ 1010 (1171)
.
T Consensus 230 ~ 230 (272)
T PRK15056 230 T 230 (272)
T ss_pred C
Confidence 3
No 355
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=5.4e-38 Score=356.93 Aligned_cols=202 Identities=26% Similarity=0.408 Sum_probs=169.3
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-----------ecCcE
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTV 229 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i 229 (1171)
+.|+++|++++|++ +.+|+||||+|++||++||+||||||||||+++|+|+++|++|.+.. .+..|
T Consensus 6 ~~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~i 82 (306)
T PRK13537 6 APIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRV 82 (306)
T ss_pred ceEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcE
Confidence 46999999999963 57999999999999999999999999999999999999999986532 23469
Q ss_pred EEEecCCCCC-cccHHHHHhcC-CC--CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHH
Q 001055 230 AYVPQVSWIF-NATVRDNILFG-SA--FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 301 (1171)
Q Consensus 230 ~~v~Q~~~l~-~~Tv~eni~~g-~~--~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAr 301 (1171)
|||||++.++ ..||+||+.+. .. .+. .+..++++.+++....+ ....+||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKAD-----------AKVGELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhc-----------CchhhCCHHHHHHHHHHH
Confidence 9999999887 58999999852 11 121 22334455555543322 233589999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001055 302 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 302 aL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
||+++|++++|||||+|||+.+++++++.+.+...+|+|+|++||+++++.. ||||++|++|++++.|+++++.+
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999877765568999999999999975 89999999999999999988754
No 356
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.6e-38 Score=336.39 Aligned_cols=189 Identities=26% Similarity=0.373 Sum_probs=161.6
Q ss_pred EEEEeeEEEeCCC--CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCceEEECCEecCCCChHHHh
Q 001055 787 IKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE---LERGRILIDGFDIAKFGLMDLR 861 (1171)
Q Consensus 787 i~~~~vs~~y~~~--~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~---p~~G~I~i~g~~i~~~~~~~~r 861 (1171)
+.++||+|.|+.. .+++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++...+ ...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~~ 82 (202)
T cd03233 4 LSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKYP 82 (202)
T ss_pred EEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhhc
Confidence 7899999999742 4579999999999999999999999999999999999999 89999999999987654 3567
Q ss_pred hheEEEcCCcccccc-cHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 862 KILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 862 ~~i~~v~Q~~~lf~~-tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
+.++|+||++.+|.. ||++|+.+.... . .++....||||||||++|||||+.
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~------------~---------------~~~~~~~LS~Ge~qrl~laral~~ 135 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRC------------K---------------GNEFVRGISGGERKRVSIAEALVS 135 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhh------------c---------------cccchhhCCHHHHHHHHHHHHHhh
Confidence 789999999988865 999998643100 0 233446799999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEe-cChhhhhh-cCEEEEEeCcEEEEec
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIA-HRLNTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vt-H~~~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
+|++|||||||++||+.+++.+++.|++..+ ++|+|+++ |+.+.+.. ||++++|++|++++.|
T Consensus 136 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 136 RASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999999998754 46766654 55677765 9999999999998754
No 357
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.9e-38 Score=354.34 Aligned_cols=206 Identities=29% Similarity=0.461 Sum_probs=170.8
Q ss_pred cEEEEeeEEEcCCCC--CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------
Q 001055 162 AISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 224 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~--~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------- 224 (1171)
.|+++|++++|+... +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 388999999997431 236999999999999999999999999999999999999999886432
Q ss_pred ---------------------ecCcEEEEecCC--CCCcccHHHHHhcCCC---CCH----HHHHHHHHHcCch-HHHhc
Q 001055 225 ---------------------IRGTVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQ-HDLDL 273 (1171)
Q Consensus 225 ---------------------~~~~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~-~~~~~ 273 (1171)
.+..||||||+| .++..||+|||.|+.. .+. ++..++++.+++. ...+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~- 160 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ- 160 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh-
Confidence 133589999986 5678899999998731 222 2345556666664 2222
Q ss_pred CCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhh-
Q 001055 274 LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS- 352 (1171)
Q Consensus 274 ~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~- 352 (1171)
....+|||||||||+|||||+.+|++|||||||++||+.++..+.+.+.+....|+|+|+||||++++.
T Consensus 161 ----------~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~ 230 (305)
T PRK13651 161 ----------RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLE 230 (305)
T ss_pred ----------CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHH
Confidence 344689999999999999999999999999999999999999999987766556899999999999875
Q ss_pred hcCEEEEEeCCEEEEecChhHHhhcc
Q 001055 353 QVDRIILVHEGMVKEEGTFEDLSNNG 378 (1171)
Q Consensus 353 ~~d~i~~l~~G~i~~~g~~~~l~~~~ 378 (1171)
.||||++|++|++++.|+++++....
T Consensus 231 ~adrv~vl~~G~i~~~g~~~~~~~~~ 256 (305)
T PRK13651 231 WTKRTIFFKDGKIIKDGDTYDILSDN 256 (305)
T ss_pred hCCEEEEEECCEEEEECCHHHHhcCH
Confidence 58999999999999999999886553
No 358
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.1e-38 Score=352.28 Aligned_cols=205 Identities=26% Similarity=0.392 Sum_probs=173.3
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 229 (1171)
.++++|++++|++...+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+.. .+..+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 589999999997433356999999999999999999999999999999999999999885422 23469
Q ss_pred EEEecCCC--CCcccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHH
Q 001055 230 AYVPQVSW--IFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300 (1171)
Q Consensus 230 ~~v~Q~~~--l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LA 300 (1171)
||++|+|. ++..||+|||.|+.. .+. +++.++++..++.+..+..+ .+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------ARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHHHHHH
Confidence 99999984 457899999998632 122 34556677777766554433 58999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001055 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 301 raL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
|||+.+|++|||||||++||+.+++.+++.+.+...+ |+|+|+|||+++++..||||++|++|+++..|+++++...
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 9999999999999999999999999999987766544 8999999999999888999999999999999999887654
No 359
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=5.9e-38 Score=361.86 Aligned_cols=203 Identities=29% Similarity=0.422 Sum_probs=172.8
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEE
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVA 230 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~ 230 (1171)
+.|+++|++++|++ +.+|+|+||++++||+++|+|||||||||||++|+|+++|++|.+.. .++.||
T Consensus 3 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig 79 (353)
T TIGR03265 3 PYLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYG 79 (353)
T ss_pred cEEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 35899999999963 56999999999999999999999999999999999999999886532 134699
Q ss_pred EEecCCCCC-cccHHHHHhcCCC---CC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHH
Q 001055 231 YVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 302 (1171)
Q Consensus 231 ~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAra 302 (1171)
||+|++.+| ..||+|||.|+.. .+ ..++.+.++..++.+..+.. ..+|||||||||+||||
T Consensus 80 ~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~-----------~~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 80 IVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKY-----------PGQLSGGQQQRVALARA 148 (353)
T ss_pred EEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCC-----------hhhCCHHHHHHHHHHHH
Confidence 999999998 5799999998732 11 23455566666665544433 35899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 001055 303 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 303 L~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
|+.+|+++||||||++||+.+++++.+.+.+..++ |.|+|+||||++++. .||||++|++|++++.|+++++..+
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~ 225 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999988765443 899999999999875 5899999999999999999988765
No 360
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=5.1e-38 Score=330.73 Aligned_cols=177 Identities=33% Similarity=0.533 Sum_probs=157.3
Q ss_pred EEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEE
Q 001055 788 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 867 (1171)
Q Consensus 788 ~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 867 (1171)
+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|+
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 78 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYV 78 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHH
Confidence 47899999975 3699999999999999999999999999999999999999999999999999888877888889999
Q ss_pred cCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEE
Q 001055 868 PQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVL 947 (1171)
Q Consensus 868 ~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlL 947 (1171)
|| +++..++.+++ ...+.+||||||||++|||||+.+|++|||
T Consensus 79 ~q--------------------------~l~~~gl~~~~-----------~~~~~~LS~G~~qrl~laral~~~p~llll 121 (180)
T cd03214 79 PQ--------------------------ALELLGLAHLA-----------DRPFNELSGGERQRVLLARALAQEPPILLL 121 (180)
T ss_pred HH--------------------------HHHHcCCHhHh-----------cCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 98 33444444333 334568999999999999999999999999
Q ss_pred ecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEec
Q 001055 948 DEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 948 DEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 122 DEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 122 DEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999998764 7899999999999866 9999999999998654
No 361
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=2e-37 Score=337.32 Aligned_cols=206 Identities=34% Similarity=0.569 Sum_probs=179.0
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 229 (1171)
.++++|+++.|+.. ++++|+|+||++++|++++|+||||||||||+++|+|+.+|++|.+.. .+..+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 37899999999632 357999999999999999999999999999999999999999886432 12359
Q ss_pred EEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCC
Q 001055 230 AYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 308 (1171)
Q Consensus 230 ~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~ 308 (1171)
+|++|++.++..||.||+.++.. ....++.+.++..++.+.++..|.+..+.+.....+||||||||++|||||+.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999887899999987643 23445667788889988888888888888888888999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEec
Q 001055 309 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEG 369 (1171)
Q Consensus 309 vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g 369 (1171)
++||||||++||+.+++.+++.+.+... ++|+|++||+++++..||++++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLG-DKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999999998776544 48999999999998778999999999987643
No 362
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=7e-38 Score=333.47 Aligned_cols=182 Identities=29% Similarity=0.470 Sum_probs=160.6
Q ss_pred cEEEEeeEEEeCCC----CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC--CCCCceEEECCEecCCCChHH
Q 001055 786 SIKFEDVVLRYRPE----LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV--ELERGRILIDGFDIAKFGLMD 859 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~----~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~--~p~~G~I~i~g~~i~~~~~~~ 859 (1171)
.++++||+++|+.. ..++++|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 38999999999752 246999999999999999999999999999999999999 9999999999998864 35
Q ss_pred HhhheEEEcCCcccccc-cHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 860 LRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 860 ~r~~i~~v~Q~~~lf~~-tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
+++.++|+||++.+|.. |+++|+.+.. . + ..||||||||++|||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~------------~--~-------------------~~LS~G~~qrv~laral 126 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAA------------K--L-------------------RGLSGGERKRVSIALEL 126 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHH------------H--h-------------------ccCCHHHHHHHHHHHHH
Confidence 67889999999988864 9999875310 0 0 06999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChh-hhhh-cCEEEEEeCcEEEEec
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN-TIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~-~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++ .+.. ||++++|++|++++.|
T Consensus 127 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 127 VSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999875 3789999999997 5655 9999999999998754
No 363
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-37 Score=351.72 Aligned_cols=206 Identities=25% Similarity=0.437 Sum_probs=170.0
Q ss_pred cEEEEeeEEEcCCCC--CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------
Q 001055 162 AISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 224 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~--~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------- 224 (1171)
+|+++|++|+|+... .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+..
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 378999999997421 136999999999999999999999999999999999999999885421
Q ss_pred -ecCcEEEEecCC--CCCcccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHH
Q 001055 225 -IRGTVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 294 (1171)
Q Consensus 225 -~~~~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqr 294 (1171)
.+..|||++|+| .+|..||.||+.|+.. ... .++.++++..++...+ .+....+||||||
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~~LSgGqk 150 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEF----------WEKSPFELSGGQM 150 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhh----------ccCCcccCCHHHH
Confidence 234599999998 6788899999998732 122 2344555555653221 1234468999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhH
Q 001055 295 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFED 373 (1171)
Q Consensus 295 qRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 373 (1171)
||++|||||+.+|+++||||||++||+.+++.+.+.+.+...+|+|+|+||||++++. .||||++|++|+++++|++++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999977665556899999999999986 589999999999999999998
Q ss_pred Hhhc
Q 001055 374 LSNN 377 (1171)
Q Consensus 374 l~~~ 377 (1171)
+...
T Consensus 231 ~~~~ 234 (288)
T PRK13643 231 VFQE 234 (288)
T ss_pred HHcC
Confidence 8654
No 364
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-37 Score=352.18 Aligned_cols=207 Identities=28% Similarity=0.462 Sum_probs=170.0
Q ss_pred cEEEEeeEEEcCCCC--CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce--------------e
Q 001055 162 AISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------I 225 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~--~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------~ 225 (1171)
.|+++|++|.|+... .+++|+||||+|++||+++|+|+||||||||+++|+|+++|++|.+.. .
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 388999999997422 247999999999999999999999999999999999999999885421 2
Q ss_pred cCcEEEEecCC--CCCcccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHH
Q 001055 226 RGTVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 296 (1171)
Q Consensus 226 ~~~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqR 296 (1171)
+..|||+||+| .+++.||+|||.|+.. .+. +++.++++.+++.. .+..+.....||||||||
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~---------~~~~~~~~~~LSgGq~qr 152 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY---------EDYKDKSPFELSGGQKRR 152 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCc---------hhhccCCcccCCHHHHHH
Confidence 34699999998 4678899999997631 222 23445566666540 011234457899999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHH
Q 001055 297 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDL 374 (1171)
Q Consensus 297 v~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 374 (1171)
++|||||+.+|++|||||||++||+.++.++++.+.....+ |+|+|+||||++++. .||||++|++|++++.|+.+++
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~ 232 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999987766543 899999999999985 5899999999999999999887
Q ss_pred hhc
Q 001055 375 SNN 377 (1171)
Q Consensus 375 ~~~ 377 (1171)
.+.
T Consensus 233 ~~~ 235 (287)
T PRK13637 233 FKE 235 (287)
T ss_pred HhC
Confidence 654
No 365
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.6e-38 Score=327.53 Aligned_cols=215 Identities=24% Similarity=0.484 Sum_probs=188.6
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.+++++|+++|+.. .|++|+||.++||++.|++|||||||||++++|+|+++|++|+|.++|.+++. ..+.+||
T Consensus 2 ~L~ie~vtK~Fg~k--~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rIG 75 (300)
T COG4152 2 ALEIEGVTKSFGDK--KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRIG 75 (300)
T ss_pred ceEEecchhccCce--eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhcc
Confidence 38999999999865 69999999999999999999999999999999999999999999999998864 4678899
Q ss_pred EEcCCcccccc-cHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 941 (1171)
|+|.+..|+.. ||.+.|.+++. ....++. ..+..|++++ ++-........+||-|++|++.+-.+++++
T Consensus 76 yLPEERGLy~k~tv~dql~yla~LkGm~~~e~~-----~~~~~wLer~--~i~~~~~~kIk~LSKGnqQKIQfisaviHe 148 (300)
T COG4152 76 YLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQ-----KKLQAWLERL--EIVGKKTKKIKELSKGNQQKIQFISAVIHE 148 (300)
T ss_pred cChhhhccCccCcHHHHHHHHHHhcCCcHHHHH-----HHHHHHHHhc--cccccccchHHHhhhhhhHHHHHHHHHhcC
Confidence 99999999955 99999887653 3344443 2355677775 333445566778999999999999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCC
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 1013 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~ 1013 (1171)
|+++|||||+|||||.+.+.+.+.+.++. +|.|||+.||+|+-++. ||+++.|++|+.|-+|+.+++.+..+
T Consensus 149 PeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G 222 (300)
T COG4152 149 PELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 (300)
T ss_pred CCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence 99999999999999999999999999876 58999999999999998 99999999999999999999986543
No 366
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.3e-37 Score=360.75 Aligned_cols=203 Identities=29% Similarity=0.424 Sum_probs=173.5
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEE
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVA 230 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~ 230 (1171)
+.++++|++++|++ +++|+|+||++++||+++|+|||||||||||++|+|+++|++|.+.. .++.||
T Consensus 13 ~~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 89 (375)
T PRK09452 13 PLVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVN 89 (375)
T ss_pred ceEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 46999999999963 56999999999999999999999999999999999999999886532 124599
Q ss_pred EEecCCCCC-cccHHHHHhcCCC---CC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHH
Q 001055 231 YVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 302 (1171)
Q Consensus 231 ~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAra 302 (1171)
||+|++.+| ..||+|||.|+.. .. .+++.++++..++.+..+..| .+|||||||||+||||
T Consensus 90 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLARa 158 (375)
T PRK09452 90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIARA 158 (375)
T ss_pred EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 999999998 5799999998742 12 124455667777766665554 4899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 001055 303 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 303 L~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
|+.+|++|||||||++||+..+..+.+.+.+..+ .|.|+|+||||+.++. .+|||++|++|++++.|+++++..+
T Consensus 159 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~ 235 (375)
T PRK09452 159 VVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE 235 (375)
T ss_pred HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999998776544 4899999999999865 5899999999999999999988654
No 367
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.2e-37 Score=377.33 Aligned_cols=215 Identities=25% Similarity=0.405 Sum_probs=182.5
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHh-hhe
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR-KIL 864 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r-~~i 864 (1171)
.|+++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...++ ..+
T Consensus 11 ~l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 11 LLCARSISKQYSGV--EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred eEEEEeEEEEeCCc--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 49999999999753 699999999999999999999999999999999999999999999999999877766654 469
Q ss_pred EEEcCCcccccc-cHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001055 865 GIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 943 (1171)
Q Consensus 865 ~~v~Q~~~lf~~-tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~ 943 (1171)
||+||++.++.. |+++|+.+...... +.. ..+.++++.+ |++...+....+|||||||||+|||||+.+|+
T Consensus 89 ~~v~q~~~~~~~~tv~e~l~~~~~~~~-~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~ 160 (510)
T PRK15439 89 YLVPQEPLLFPNLSVKENILFGLPKRQ-ASM-----QKMKQLLAAL--GCQLDLDSSAGSLEVADRQIVEILRGLMRDSR 160 (510)
T ss_pred EEEeccCccCCCCcHHHHhhcccccch-HHH-----HHHHHHHHHc--CCCccccCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 999999988865 99999975422111 111 1123334432 45445566677899999999999999999999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 944 ILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 944 iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
+|||||||++||+.+...+.+.|+++. +++|||++|||++.+.. ||+|++|++|++++.|+++++..
T Consensus 161 lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 161 ILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 999999999999999999999999875 47899999999999877 99999999999999999988764
No 368
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=5.9e-38 Score=340.50 Aligned_cols=191 Identities=25% Similarity=0.426 Sum_probs=159.3
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------ecC
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IRG 227 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------~~~ 227 (1171)
++++|++++|+.. .+++|+++||++++||+++|+||||||||||+++|+|+++|++|.+.. .+.
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999632 246999999999999999999999999999999999999999885422 124
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCC---CC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHH
Q 001055 228 TVAYVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 299 (1171)
Q Consensus 228 ~i~~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~L 299 (1171)
.++|++|++.++ ..||+||+.++.. .. .+++.++++..++.+..+.. ..+|||||||||+|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHAL-----------PMQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHHHHHHHH
Confidence 699999999887 5799999987521 11 23455566666665544433 35899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEE
Q 001055 300 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMV 365 (1171)
Q Consensus 300 AraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i 365 (1171)
||||+.+|+++||||||++||+.+++++.+.+.+...+|+|+|+||||++++.. ||++++|++|++
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999877655568999999999999875 799999999874
No 369
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=8.6e-38 Score=329.60 Aligned_cols=172 Identities=29% Similarity=0.473 Sum_probs=155.6
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCCh-HHHhhhe
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL-MDLRKIL 864 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~-~~~r~~i 864 (1171)
.++++|++++| +++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++ ...|+.+
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 38999999998 7999999999999999999999999999999999999999999999999988764 3467789
Q ss_pred EEEcCCc---ccc-cccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 865 GIIPQSP---VLF-SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 865 ~~v~Q~~---~lf-~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
+|+||++ .++ ..|+++|+.+... ||||||||++|||||+.
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------LS~G~~qrl~la~al~~ 121 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL------------------------------------LSGGNQQKVVLARWLAR 121 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh------------------------------------cCHHHHHHHHHHHHHcc
Confidence 9999995 344 4699999864200 99999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEE
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRV 999 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i 999 (1171)
+|++|||||||++||+.+++.+.+.|+++. +++|+|++||+++++.. ||++++|++|++
T Consensus 122 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 122 DPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999875 47899999999999988 999999999974
No 370
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.3e-38 Score=306.09 Aligned_cols=194 Identities=26% Similarity=0.406 Sum_probs=168.3
Q ss_pred eCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCccccc
Q 001055 796 YRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFS 875 (1171)
Q Consensus 796 y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~ 875 (1171)
|.....++|+++||++.+||.++|.||||||||||++.++-+..|++|++++.|.+++.+++..+|++|+||-|.|.||.
T Consensus 11 y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg 90 (223)
T COG4619 11 YLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFG 90 (223)
T ss_pred hhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccc
Confidence 43334579999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHhhccC-CC---C-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecC
Q 001055 876 GTVRFNLDP-FS---E-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEA 950 (1171)
Q Consensus 876 ~tv~~nl~~-~~---~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEp 950 (1171)
+||.+|+.+ +. . .... .+.+++.++. -.++.+.++..+||||||||++|+|-|.--|+||+||||
T Consensus 91 ~tVeDNlifP~~~r~rr~dr~---------aa~~llar~~-l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~ 160 (223)
T COG4619 91 DTVEDNLIFPWQIRNRRPDRA---------AALDLLARFA-LPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEI 160 (223)
T ss_pred cchhhccccchHHhccCCChH---------HHHHHHHHcC-CchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCc
Confidence 999999964 21 1 1122 2334444432 124566778889999999999999999999999999999
Q ss_pred CcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhh-hhhcCEEEEEeCcEE
Q 001055 951 TAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNT-IIDCDRILLLDSGRV 999 (1171)
Q Consensus 951 Ts~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~-~~~~d~i~vl~~G~i 999 (1171)
||+||+.+++.|.+.|.++.. +..++.||||-+. +..+|+++-+..|++
T Consensus 161 TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 161 TSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred hhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 999999999999999999873 5899999999999 556999999999876
No 371
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=2.5e-37 Score=343.73 Aligned_cols=217 Identities=19% Similarity=0.298 Sum_probs=175.5
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCceEEECCEecCCCChHHHhh-
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI--VELERGRILIDGFDIAKFGLMDLRK- 862 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~--~~p~~G~I~i~g~~i~~~~~~~~r~- 862 (1171)
.++++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|+|+ ++|++|+|.++|.++...++...++
T Consensus 7 ~l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 7 ILEIKNLHASVNEN--EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred eEEEEeEEEEeCCE--EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 49999999999743 699999999999999999999999999999999998 6899999999999998877665554
Q ss_pred heEEEcCCcccccc-cHHhhccCCCC----C---CHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCC-CCChhHHHHH
Q 001055 863 ILGIIPQSPVLFSG-TVRFNLDPFSE----H---SDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGE-NFSVGQRQLL 932 (1171)
Q Consensus 863 ~i~~v~Q~~~lf~~-tv~~nl~~~~~----~---~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~-~LSgGqkqrl 932 (1171)
.++|+||++.++.+ |+.+|+..... . .+....+.. ..+.+.++.+ |+. +..+.... .||||||||+
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~--~l~~~~~~~~~~~~LSgG~~qrv 160 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFL--EIINEKLKLV--GMDPSFLSRNVNEGFSGGEKKRN 160 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHH--HHHHHHHHHc--CCchhhhccccccCCCHHHHHHH
Confidence 48999999998876 88888753211 0 000000000 1123333332 343 33444444 5999999999
Q ss_pred HHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh--cCEEEEEeCcEEEEecChhHH
Q 001055 933 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID--CDRILLLDSGRVLEYDTPEEL 1008 (1171)
Q Consensus 933 ~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~--~d~i~vl~~G~i~~~g~~~el 1008 (1171)
+|||||+.+|+||||||||++||+.+.+.+.+.|+++. .++|||++||+++.+.. ||++++|++|++++.|+++.+
T Consensus 161 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 161 EILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhhh
Confidence 99999999999999999999999999999999999875 47999999999999875 899999999999999998843
No 372
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-37 Score=359.34 Aligned_cols=205 Identities=28% Similarity=0.420 Sum_probs=170.4
Q ss_pred cEEEEeeEEEcCCCC-CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------e
Q 001055 162 AISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------I 225 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~-~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------~ 225 (1171)
+|+++|++|+|+.+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+.. .
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 378999999997322 357999999999999999999999999999999999999999886422 1
Q ss_pred cCcEEEEecCCCCC-cccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHH
Q 001055 226 RGTVAYVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 297 (1171)
Q Consensus 226 ~~~i~~v~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv 297 (1171)
+..|||++|++.++ ..||+||+.++.. .+. ++..+.++..++.+..+ ....+|||||||||
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qRv 149 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKAD-----------RYPAQLSGGQKQRV 149 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHH
Confidence 34699999999887 5799999987521 122 23344555555544333 23468999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHh
Q 001055 298 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLS 375 (1171)
Q Consensus 298 ~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 375 (1171)
+|||||+.+|++|||||||++||+.+++.+++.+.+... .|+|+|++||+++++.. ||++++|++|++++.|+.+++.
T Consensus 150 ~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999998776644 38999999999999875 8999999999999999999886
Q ss_pred hc
Q 001055 376 NN 377 (1171)
Q Consensus 376 ~~ 377 (1171)
..
T Consensus 230 ~~ 231 (343)
T PRK11153 230 SH 231 (343)
T ss_pred hC
Confidence 54
No 373
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=8.6e-38 Score=343.42 Aligned_cols=195 Identities=27% Similarity=0.410 Sum_probs=159.8
Q ss_pred CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEc-CCcccc-cccH
Q 001055 801 PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIP-QSPVLF-SGTV 878 (1171)
Q Consensus 801 ~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~-Q~~~lf-~~tv 878 (1171)
+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.. ....+++.++|+| |++.++ ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWK-RRKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccc-cchhhcccEEEEcCCccccCCCCcH
Confidence 369999999999999999999999999999999999999999999999998754 2345677899998 556666 4599
Q ss_pred HhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCC
Q 001055 879 RFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVD 955 (1171)
Q Consensus 879 ~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD 955 (1171)
++|+.+.. .....+..+. +.+.++. .|++...+....+||||||||++|||||+.+|++|||||||++||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~--~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 185 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKR-----LDELSEL--LDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHH-----HHHHHHH--cCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 99985421 1222222211 2233333 245445555667899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEec
Q 001055 956 VRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 956 ~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g 1003 (1171)
+.+.+.+.+.|+++.+ ++|+|++||+++++.. ||++++|++|++++.|
T Consensus 186 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 186 VVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999998753 6899999999999877 9999999999998764
No 374
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=8.5e-38 Score=336.76 Aligned_cols=197 Identities=24% Similarity=0.382 Sum_probs=161.0
Q ss_pred EEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCCh----HHHhhhe
Q 001055 789 FEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL----MDLRKIL 864 (1171)
Q Consensus 789 ~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~----~~~r~~i 864 (1171)
++||++.|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..++. ...++.+
T Consensus 1 i~~l~~~~~~~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGDK--IILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECCE--EEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 46899999753 69999999999999999999999999999999999999999999999999765432 2356789
Q ss_pred EEEcCCccccc-ccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 865 GIIPQSPVLFS-GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 865 ~~v~Q~~~lf~-~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
+|++|++.+|. .|+++|+.+.. .....+.. ..+.++++.+ |++...+....+||||||||++|||||+.
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~lS~G~~qr~~laral~~ 151 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKR-----EKKKEALEKV--GLNLKLKQKIYELSGGEQQRVALARAILK 151 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CchhhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 99999999886 59999996421 11111111 1122333332 44444555667899999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhhcCEEEEE
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIIDCDRILLL 994 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~~d~i~vl 994 (1171)
+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|
T Consensus 152 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 152 DPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred CCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999999998754 78999999999987779999875
No 375
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-37 Score=337.73 Aligned_cols=193 Identities=29% Similarity=0.428 Sum_probs=160.3
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEEEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 232 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v 232 (1171)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+..++|+
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v 77 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMV 77 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEE
Confidence 468999999963 57999999999999999999999999999999999999999886532 12469999
Q ss_pred ecCCCCC-cccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhc
Q 001055 233 PQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 304 (1171)
Q Consensus 233 ~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~ 304 (1171)
||++.++ ..||+||+.++.. ... +++.+.++..++.+..+. ...+||||||||++|||||+
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrl~la~al~ 146 (213)
T cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNR-----------YPHELSGGQQQRVALARALA 146 (213)
T ss_pred cCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhc-----------ChhhCCHHHHHHHHHHHHHh
Confidence 9999887 5799999987521 111 234455566665544333 33589999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEec
Q 001055 305 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEG 369 (1171)
Q Consensus 305 ~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g 369 (1171)
.+|+++||||||++||+.+++++++.+.+... .|+|+|++||+++++.. ||++++|++|++++.|
T Consensus 147 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 147 REPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998776544 48999999999999865 7999999999988754
No 376
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-37 Score=348.21 Aligned_cols=200 Identities=29% Similarity=0.452 Sum_probs=169.7
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 229 (1171)
.|+++|++|+|+. .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+.. .+..|
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 5899999999963 246999999999999999999999999999999999999999886532 13469
Q ss_pred EEEecCC--CCCcccHHHHHhcCCC---CC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHH
Q 001055 230 AYVPQVS--WIFNATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300 (1171)
Q Consensus 230 ~~v~Q~~--~l~~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LA 300 (1171)
||++|+| .++..||.||+.|+.. .+ .+++..+++.+++.+..+..+ .+|||||||||+||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999998 4678899999998632 12 134556667777765554443 48999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHH
Q 001055 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDL 374 (1171)
Q Consensus 301 raL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 374 (1171)
|||+.+|++|||||||++||+.++.++++.+.+...+|+|+|++||+++++. .||||++|++|++++.|+++++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 9999999999999999999999999999987766556899999999999985 5899999999999999998654
No 377
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-37 Score=340.80 Aligned_cols=201 Identities=31% Similarity=0.457 Sum_probs=166.9
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEEE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 231 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~ 231 (1171)
.++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..++|
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~ 78 (239)
T cd03296 2 SIEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGF 78 (239)
T ss_pred EEEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEE
Confidence 4789999999963 57999999999999999999999999999999999999999886432 1245999
Q ss_pred EecCCCCC-cccHHHHHhcCCCC-------CH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHH
Q 001055 232 VPQVSWIF-NATVRDNILFGSAF-------EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 299 (1171)
Q Consensus 232 v~Q~~~l~-~~Tv~eni~~g~~~-------~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~L 299 (1171)
++|+|.++ ..||+||+.++... +. ++..+.++..++.+..+ ....+|||||||||+|
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~l 147 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLAD-----------RYPAQLSGGQRQRVAL 147 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHHHH
Confidence 99999887 57999999875321 11 22334455555543333 3346899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001055 300 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 300 AraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
||||+.+|+++||||||++||+.+++.+.+.+.+...+ |+|+|++||+++++.. ||++++|++|++++.|+++++..
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 148 ARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999999999999999999999977765543 8999999999998765 89999999999999999887754
No 378
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=2.3e-37 Score=357.02 Aligned_cols=202 Identities=31% Similarity=0.446 Sum_probs=170.7
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEEE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 231 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~ 231 (1171)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+.. .++.|||
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~ 78 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGF 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEE
Confidence 4889999999963 56999999999999999999999999999999999999999886532 1246999
Q ss_pred EecCCCCC-cccHHHHHhcCCC-------CC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHH
Q 001055 232 VPQVSWIF-NATVRDNILFGSA-------FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 299 (1171)
Q Consensus 232 v~Q~~~l~-~~Tv~eni~~g~~-------~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~L 299 (1171)
|+|++.+| ..||+|||.|+.. .+ .++..+.++..++.+..+.. ..+|||||||||+|
T Consensus 79 v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LSgGq~QRval 147 (353)
T PRK10851 79 VFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY-----------PAQLSGGQKQRVAL 147 (353)
T ss_pred EecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhhCCHHHHHHHHH
Confidence 99999998 5799999998732 11 12344556666665444433 35899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001055 300 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 300 AraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
||||+.+|++|||||||++||+.+++.+.+.+.+...+ |.|+|+||||++++.. ||||++|++|++++.|+++++..+
T Consensus 148 ArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~ 227 (353)
T PRK10851 148 ARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWRE 227 (353)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999987765544 8999999999999765 899999999999999999988654
No 379
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=2.4e-37 Score=360.14 Aligned_cols=202 Identities=30% Similarity=0.461 Sum_probs=172.9
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 229 (1171)
.++++|++++|+ ++++|+|+||++++||+++|+||||||||||+|+|+|+++|++|.+.. .++.|
T Consensus 3 ~L~~~nls~~y~---~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFG---DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEEC---CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 589999999996 357999999999999999999999999999999999999999886432 23469
Q ss_pred EEEecCCCC-CcccHHHHHhcCCC-----C---C---HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHH
Q 001055 230 AYVPQVSWI-FNATVRDNILFGSA-----F---E---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 297 (1171)
Q Consensus 230 ~~v~Q~~~l-~~~Tv~eni~~g~~-----~---~---~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv 297 (1171)
||++|++.+ ++.||+||+.++.. . . .+++.++++..++.+..+. ...+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-----------~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-----------PVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHH
Confidence 999999987 58999999988641 1 1 2345566677776554432 3468999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhh
Q 001055 298 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 298 ~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
+|||||+++|++|||||||++||+.++..+++.+.+....|+|+|++||+++++. .|||+++|++|++++.|++++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 9999999999999999999999999999999987776556899999999999996 489999999999999999999876
Q ss_pred c
Q 001055 377 N 377 (1171)
Q Consensus 377 ~ 377 (1171)
.
T Consensus 229 ~ 229 (402)
T PRK09536 229 A 229 (402)
T ss_pred c
Confidence 5
No 380
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1.8e-37 Score=356.15 Aligned_cols=203 Identities=25% Similarity=0.408 Sum_probs=169.1
Q ss_pred CCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-----------ecCc
Q 001055 160 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGT 228 (1171)
Q Consensus 160 ~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~ 228 (1171)
.+.|+++|++++|++ +.+|+||||+|++|+++||+||||||||||+++|+|+++|++|.+.. .+..
T Consensus 39 ~~~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ 115 (340)
T PRK13536 39 TVAIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARAR 115 (340)
T ss_pred ceeEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhcc
Confidence 346999999999963 56999999999999999999999999999999999999999886532 2346
Q ss_pred EEEEecCCCCC-cccHHHHHhcC-C--CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHH
Q 001055 229 VAYVPQVSWIF-NATVRDNILFG-S--AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300 (1171)
Q Consensus 229 i~~v~Q~~~l~-~~Tv~eni~~g-~--~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LA 300 (1171)
|||+||++.++ ..||.||+.+. . .... ++..+.++.+++.+.. .....+||||||||++||
T Consensus 116 ig~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~-----------~~~~~~LS~G~kqrv~lA 184 (340)
T PRK13536 116 IGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA-----------DARVSDLSGGMKRRLTLA 184 (340)
T ss_pred EEEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------CCChhhCCHHHHHHHHHH
Confidence 99999999886 78999999752 1 1111 1223344444443322 233468999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001055 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 301 raL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
|||+++|+++||||||+||||.+++++++.+.+....|+|+|++||+++++.. ||||++|++|++++.|+++++..
T Consensus 185 ~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 185 RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999887765568999999999999975 89999999999999999998754
No 381
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-37 Score=330.98 Aligned_cols=181 Identities=25% Similarity=0.400 Sum_probs=158.8
Q ss_pred cEEEEeeEEEeCCC--CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC--CCCCceEEECCEecCCCChHHHh
Q 001055 786 SIKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV--ELERGRILIDGFDIAKFGLMDLR 861 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~--~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~--~p~~G~I~i~g~~i~~~~~~~~r 861 (1171)
.++++|+++.|++. .+++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|.++. ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 38999999999641 146999999999999999999999999999999999986 489999999999885 4567
Q ss_pred hheEEEcCCcccccc-cHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 862 KILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 862 ~~i~~v~Q~~~lf~~-tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
++++|++|++.+|.. |+++|+.+.. . +. +||||||||++||||++.
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~---------~---------~~---------------~LSgGe~qrv~la~al~~ 125 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSA---------L---------LR---------------GLSVEQRKRLTIGVELAA 125 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHH---------H---------Hh---------------cCCHHHhHHHHHHHHHhc
Confidence 889999999988865 9999986310 0 00 699999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhh-hh-hcCEEEEEeC-cEEEEec
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNT-II-DCDRILLLDS-GRVLEYD 1003 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~-~~-~~d~i~vl~~-G~i~~~g 1003 (1171)
+|++|||||||++||+.+...+++.|+++.+ ++|+|++||+++. +. .||+|++|++ |++++.|
T Consensus 126 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 126 KPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred CCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999999999998754 7899999999984 54 4999999998 9998865
No 382
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=3.4e-37 Score=341.10 Aligned_cols=209 Identities=23% Similarity=0.379 Sum_probs=174.4
Q ss_pred EEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEE
Q 001055 788 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 867 (1171)
Q Consensus 788 ~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 867 (1171)
+++||++. .+|+|+||+|++||++||+||||||||||+++|+|+++ .+|+|.++|.++...+...+++.++|+
T Consensus 2 ~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 2 QLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred cccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEe
Confidence 46677774 27999999999999999999999999999999999985 599999999999887877788889999
Q ss_pred cCCcccc-cccHHhhccCCCCC--CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc----
Q 001055 868 PQSPVLF-SGTVRFNLDPFSEH--SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR---- 940 (1171)
Q Consensus 868 ~Q~~~lf-~~tv~~nl~~~~~~--~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~---- 940 (1171)
||++.++ ..|+++|+.++... ...+. ...+.+.++.+ |++...+.....||||||||++|||||+.
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~ 147 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAV-----ASALNEVAEAL--GLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPD 147 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHH-----HHHHHHHHHHc--CCHhHhcCCcccCCHHHHHHHHHHHHHhccccc
Confidence 9998654 56999999754221 11111 11233444443 55555566778899999999999999997
Q ss_pred ---CCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 941 ---RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 941 ---~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
+|++|||||||++||+.+...+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 148 ~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 148 INPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred cCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 679999999999999999999999999875 47899999999998876 99999999999999999988754
No 383
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.5e-37 Score=342.20 Aligned_cols=200 Identities=23% Similarity=0.378 Sum_probs=164.2
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecCcE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGTV 229 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~i 229 (1171)
++++|++++|+. +++|+++||++++||+++|+||||||||||+++|+|+++|++|.+.. .+..+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 468999999963 46999999999999999999999999999999999999999886421 12359
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCC-------------CH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccCh
Q 001055 230 AYVPQVSWIFN-ATVRDNILFGSAF-------------EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISG 291 (1171)
Q Consensus 230 ~~v~Q~~~l~~-~Tv~eni~~g~~~-------------~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSG 291 (1171)
+|+||++.++. .||+||+.++... .. +++.+.++..++.+ ..+....+|||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSg 146 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLAD-----------LADRPAGELSY 146 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccc-----------hhhCChhhCCH
Confidence 99999998875 5999999875311 01 11222333333322 23445578999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecC
Q 001055 292 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGT 370 (1171)
Q Consensus 292 GqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~ 370 (1171)
||||||+|||||+.+|+++||||||++||+.+++++++.+.+...+|+|+|++||+++++.. ||++++|++|++++.|+
T Consensus 147 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~ 226 (236)
T cd03219 147 GQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecC
Confidence 99999999999999999999999999999999999999877665568999999999999865 89999999999999999
Q ss_pred hhHHhh
Q 001055 371 FEDLSN 376 (1171)
Q Consensus 371 ~~~l~~ 376 (1171)
++++..
T Consensus 227 ~~~~~~ 232 (236)
T cd03219 227 PDEVRN 232 (236)
T ss_pred HHHhcc
Confidence 887653
No 384
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-37 Score=306.25 Aligned_cols=220 Identities=27% Similarity=0.426 Sum_probs=184.7
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCC----------
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF---------- 855 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~---------- 855 (1171)
.++++|+.++|+.. .+|++||++.++|+.+.|+|.|||||||+++||.=+-.|+.|.|.++|..|.-.
T Consensus 6 ~l~v~dlHK~~G~~--eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 6 ALEVEDLHKRYGEH--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred ceehhHHHhhcccc--hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 48999999999865 699999999999999999999999999999999999999999999999887421
Q ss_pred C---hHHHhhheEEEcCCcccccc-cHHhhccCCC----CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChh
Q 001055 856 G---LMDLRKILGIIPQSPVLFSG-TVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVG 927 (1171)
Q Consensus 856 ~---~~~~r~~i~~v~Q~~~lf~~-tv~~nl~~~~----~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgG 927 (1171)
+ ...+|.++|+|+|+..|++. ||.||..-.+ ..+..+..+ + +..++.+ .|+....+..+..||||
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e---~--Ae~~L~k--VGi~ek~~~YP~~LSGG 156 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIE---R--AEKYLAK--VGIAEKADAYPAHLSGG 156 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHH---H--HHHHHHH--hCchhhhhcCccccCch
Confidence 2 23368889999999999865 9999985221 112222111 1 2233333 35555555666789999
Q ss_pred HHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecCh
Q 001055 928 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 1005 (1171)
Q Consensus 928 qkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~ 1005 (1171)
|+||++|||||..+|+++++|||||+|||+-.-++.+.++++. .|+|+++|||.|.++.+ +.+|+.|.+|.|-|+|+|
T Consensus 157 QQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P 236 (256)
T COG4598 157 QQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPP 236 (256)
T ss_pred HHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCCh
Confidence 9999999999999999999999999999999999999999887 48999999999999998 999999999999999999
Q ss_pred hHHhhcCCC
Q 001055 1006 EELLSNEGS 1014 (1171)
Q Consensus 1006 ~el~~~~~~ 1014 (1171)
+++..++.+
T Consensus 237 ~qvf~nP~S 245 (256)
T COG4598 237 EQVFGNPQS 245 (256)
T ss_pred HHHhcCCCC
Confidence 999987754
No 385
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.8e-36 Score=380.84 Aligned_cols=97 Identities=25% Similarity=0.439 Sum_probs=88.2
Q ss_pred Ccch-hhhcCCCCCChhHHHHHHHHHHhcc---CCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhh
Q 001055 912 GLDA-QVSEAGENFSVGQRQLLSLSRALLR---RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTII 986 (1171)
Q Consensus 912 gl~~-~~~~~~~~LSgGqkqrl~lArall~---~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~ 986 (1171)
|+.. ..++...+|||||+|||+|||+|++ +|+++||||||+|||+.+...+++.|+++. .+.|||+|+|+++.+.
T Consensus 816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~ 895 (924)
T TIGR00630 816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK 895 (924)
T ss_pred CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 5544 3577788999999999999999997 599999999999999999999999999876 4789999999999998
Q ss_pred hcCEEEEE------eCcEEEEecChhHH
Q 001055 987 DCDRILLL------DSGRVLEYDTPEEL 1008 (1171)
Q Consensus 987 ~~d~i~vl------~~G~i~~~g~~~el 1008 (1171)
.||+|++| ++|+|++.|+++++
T Consensus 896 ~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 896 TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 89999999 79999999999886
No 386
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.6e-37 Score=358.57 Aligned_cols=202 Identities=27% Similarity=0.420 Sum_probs=172.2
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCC--Cccce----------ecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--DASAV----------IRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~--g~~~~----------~~~~i 229 (1171)
.|+++|++++|+. +.+|+|+||++++||+++|+|||||||||||++|+|+++|++ |.+.. .++.|
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~i 81 (362)
T TIGR03258 5 GIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGL 81 (362)
T ss_pred EEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCE
Confidence 5899999999963 469999999999999999999999999999999999999998 86532 13469
Q ss_pred EEEecCCCCC-cccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHH
Q 001055 230 AYVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 301 (1171)
Q Consensus 230 ~~v~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAr 301 (1171)
|||+|++.+| ..||+|||.|+.. ... .++.++++..++.+..+..+ .+|||||||||+|||
T Consensus 82 g~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvaLAR 150 (362)
T TIGR03258 82 ALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRIAIAR 150 (362)
T ss_pred EEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHHHHHH
Confidence 9999999998 5699999998632 121 24455666666665554444 589999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC--CCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001055 302 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS--GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 302 aL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~--~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
||+.+|++|||||||++||+..+.++.+.+.+...+ |.|+|+||||++++.. +|||++|++|++++.|+++++..+
T Consensus 151 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 151 AIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDA 229 (362)
T ss_pred HHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 999999999999999999999999999988766544 7899999999999764 899999999999999999988754
No 387
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-37 Score=348.45 Aligned_cols=206 Identities=30% Similarity=0.517 Sum_probs=169.8
Q ss_pred EEEEeeEEEcCCCC--CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------------
Q 001055 163 ISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------- 224 (1171)
Q Consensus 163 i~~~~~s~~~~~~~--~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------- 224 (1171)
++++|++|+|+... .+++|+||||+|++||+++|+|+||||||||+++|+|+++|++|.+..
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996422 246999999999999999999999999999999999999999885422
Q ss_pred ecCcEEEEecCC--CCCcccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHH
Q 001055 225 IRGTVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 295 (1171)
Q Consensus 225 ~~~~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrq 295 (1171)
.+..||||+|+| .+++.||+|||.|+.. .+. +++.++++.+++...+ .+....+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~----------~~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL----------LARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhh----------hhCCcccCCHHHHH
Confidence 123599999997 5778899999988631 122 2344556666664221 12334689999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhH
Q 001055 296 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 373 (1171)
Q Consensus 296 Rv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 373 (1171)
||+|||||+.+|+++||||||++||+.+..++++.+..... .|.|+|+||||++++.. ||||++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999998776644 48999999999999864 89999999999999999988
Q ss_pred Hhhcc
Q 001055 374 LSNNG 378 (1171)
Q Consensus 374 l~~~~ 378 (1171)
+.+..
T Consensus 233 ~~~~~ 237 (290)
T PRK13634 233 IFADP 237 (290)
T ss_pred HhcCH
Confidence 76543
No 388
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-37 Score=359.96 Aligned_cols=202 Identities=29% Similarity=0.398 Sum_probs=170.7
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEEE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 231 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~ 231 (1171)
.|+++|++++|+. +++|+|+||++++||+++|+|||||||||||++|+|+++|++|.+.. .+..|||
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~ 79 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGM 79 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEE
Confidence 4899999999963 56999999999999999999999999999999999999999886532 1235999
Q ss_pred EecCCCCC-cccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHh
Q 001055 232 VPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 303 (1171)
Q Consensus 232 v~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL 303 (1171)
++|++.+| ..||+|||.|+.. ... +++.++++..++.+..+.. ..+|||||||||+|||||
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~-----------~~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRK-----------PKALSGGQRQRVAIGRTL 148 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCC-----------hhhCCHHHHHHHHHHHHH
Confidence 99999987 5799999998632 121 3445566666665544433 358999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001055 304 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 304 ~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
+.+|++|||||||++||+.+++.+.+.+.+...+ |.|+|+||||++++.. ||+|++|++|++++.|+++++...
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999887765443 8999999999998765 899999999999999999888654
No 389
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-37 Score=348.14 Aligned_cols=207 Identities=24% Similarity=0.432 Sum_probs=168.8
Q ss_pred cEEEEeeEEEcCCCC--CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------
Q 001055 162 AISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 224 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~--~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------- 224 (1171)
.++++|++|+|+... .+++|+||||+|++||+++|+|+||||||||+++|+|+++|++|.+..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 388999999996322 247999999999999999999999999999999999999999885421
Q ss_pred -ecCcEEEEecCC--CCCcccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHH
Q 001055 225 -IRGTVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 294 (1171)
Q Consensus 225 -~~~~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqr 294 (1171)
.+..||||||+| .+|..||.|||.|+.. .+. +++.+.++.+++... ..+....+||||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LSgGq~ 151 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRD----------VMSQSPFQMSGGQM 151 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCHHHH
Confidence 234699999997 5777899999998631 222 223344444554311 12234568999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChh
Q 001055 295 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFE 372 (1171)
Q Consensus 295 qRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 372 (1171)
||++|||||+.+|+++||||||++||+.++.++.+.+.+... .|.|+|+|||+++++. .||||++|++|++++.|+++
T Consensus 152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~ 231 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPK 231 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999997776544 4899999999999986 57999999999999999998
Q ss_pred HHhhcc
Q 001055 373 DLSNNG 378 (1171)
Q Consensus 373 ~l~~~~ 378 (1171)
++.+..
T Consensus 232 ~~~~~~ 237 (286)
T PRK13646 232 ELFKDK 237 (286)
T ss_pred HHHhCH
Confidence 876543
No 390
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.9e-38 Score=314.82 Aligned_cols=203 Identities=24% Similarity=0.392 Sum_probs=172.5
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-----------ecCcEE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVA 230 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~ 230 (1171)
++++.+++++|++ -..+++||||++++||++||.|||||||||+|++|++++.|++|.+.. .+++||
T Consensus 1 Ml~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IG 78 (245)
T COG4555 1 MLEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIG 78 (245)
T ss_pred CeeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcc
Confidence 3789999999975 234899999999999999999999999999999999999999987543 456799
Q ss_pred EEecCCCCC-cccHHHHHhcCCC---CC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHH
Q 001055 231 YVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 302 (1171)
Q Consensus 231 ~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAra 302 (1171)
.++-+..++ ..|++|||.|... .. +.+..+..+..++.+.++ .+..++|-||||||+||||
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~-----------rRv~~~S~G~kqkV~iARA 147 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLD-----------RRVGEFSTGMKQKVAIARA 147 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHH-----------HHHhhhchhhHHHHHHHHH
Confidence 999777787 7899999986421 11 234444555555555544 3446899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 001055 303 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 303 L~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
|+++|++++|||||||||..+.+.+.+.+.+.+..|+++|+.||.+++++ .|||++++++|+++..|+.+++...
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 99999999999999999999999999988888888999999999999998 5899999999999999999887543
No 391
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-37 Score=377.05 Aligned_cols=215 Identities=22% Similarity=0.367 Sum_probs=181.9
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCceEEECCEecCCCChHH-Hhh
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--ERGRILIDGFDIAKFGLMD-LRK 862 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p--~~G~I~i~g~~i~~~~~~~-~r~ 862 (1171)
.|+++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+... .|+
T Consensus 5 ~l~~~nl~~~~~~~--~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (506)
T PRK13549 5 LLEMKNITKTFGGV--KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERA 82 (506)
T ss_pred eEEEeeeEEEeCCe--EeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHC
Confidence 38999999999743 699999999999999999999999999999999999996 8999999999998766554 457
Q ss_pred heEEEcCCcccccc-cHHhhccCCCC------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001055 863 ILGIIPQSPVLFSG-TVRFNLDPFSE------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 935 (1171)
Q Consensus 863 ~i~~v~Q~~~lf~~-tv~~nl~~~~~------~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 935 (1171)
.+|||||++.+|.. |+++|+.+... ....+.. ..+.++++.+ |++...+....+||||||||++||
T Consensus 83 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~la 155 (506)
T PRK13549 83 GIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMY-----LRAQKLLAQL--KLDINPATPVGNLGLGQQQLVEIA 155 (506)
T ss_pred CeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHH-----HHHHHHHHHc--CCCCCcccchhhCCHHHHHHHHHH
Confidence 79999999988865 99999975321 1111111 1234455553 555555666788999999999999
Q ss_pred HHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 936 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 936 rall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
|||+.+|+||||||||++||+.+...+++.|.++. +++|||+||||++.+.. ||+|++|++|++++.|+++++.
T Consensus 156 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 156 KALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 99999999999999999999999999999998875 47899999999999987 9999999999999999988764
No 392
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-37 Score=378.17 Aligned_cols=215 Identities=22% Similarity=0.344 Sum_probs=181.9
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH-hhhe
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKIL 864 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i 864 (1171)
.++++|++++|++. ++++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.+
T Consensus 5 ~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 82 (510)
T PRK09700 5 YISMAGIGKSFGPV--HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGI 82 (510)
T ss_pred eEEEeeeEEEcCCe--EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCe
Confidence 38999999999753 69999999999999999999999999999999999999999999999999987776543 4579
Q ss_pred EEEcCCcccccc-cHHhhccCCCC----C------CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001055 865 GIIPQSPVLFSG-TVRFNLDPFSE----H------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 933 (1171)
Q Consensus 865 ~~v~Q~~~lf~~-tv~~nl~~~~~----~------~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~ 933 (1171)
+||||++.++.. |+++|+.+... . ...+.. ..+.+.++.+ |+....+....+||||||||++
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv~ 155 (510)
T PRK09700 83 GIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMR-----VRAAMMLLRV--GLKVDLDEKVANLSISHKQMLE 155 (510)
T ss_pred EEEeecccccCCCcHHHHhhhccccccccccccccCHHHHH-----HHHHHHHHHc--CCCCCcccchhhCCHHHHHHHH
Confidence 999999988865 99999964211 0 111111 1233445443 5555556667889999999999
Q ss_pred HHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 934 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 934 lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
|||||+.+|+||||||||++||+.+...+++.|+++. .++|||+|||+++.+.. ||+|++|++|+++..|+++++.
T Consensus 156 ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 233 (510)
T PRK09700 156 IAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVS 233 (510)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCC
Confidence 9999999999999999999999999999999999875 37899999999999987 9999999999999999998875
No 393
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=3.7e-37 Score=318.43 Aligned_cols=159 Identities=30% Similarity=0.538 Sum_probs=147.7
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChH-HHhhheE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM-DLRKILG 865 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~-~~r~~i~ 865 (1171)
++++|++++|++. ++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..++.++
T Consensus 1 l~~~~l~~~~~~~--~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~ 78 (163)
T cd03216 1 LELRGITKRFGGV--KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIA 78 (163)
T ss_pred CEEEEEEEEECCe--EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeE
Confidence 4789999999753 699999999999999999999999999999999999999999999999999877654 4567899
Q ss_pred EEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 001055 866 IIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 945 (1171)
Q Consensus 866 ~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iL 945 (1171)
|+|| ||||||||++||||++++|++|
T Consensus 79 ~~~q------------------------------------------------------LS~G~~qrl~laral~~~p~il 104 (163)
T cd03216 79 MVYQ------------------------------------------------------LSVGERQMVEIARALARNARLL 104 (163)
T ss_pred EEEe------------------------------------------------------cCHHHHHHHHHHHHHhcCCCEE
Confidence 9998 9999999999999999999999
Q ss_pred EEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEE
Q 001055 946 VLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 1001 (1171)
Q Consensus 946 lLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~ 1001 (1171)
||||||++||+.+++.+.+.|+++. ++.|+|++||+++.+.. ||++++|++|++++
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999875 47899999999998876 99999999999875
No 394
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=2.8e-37 Score=320.31 Aligned_cols=163 Identities=33% Similarity=0.432 Sum_probs=148.6
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++|++++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +.++|
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~ 68 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLF 68 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEE
Confidence 4689999999643 36999999999999999999999999999999999999999999999873 57999
Q ss_pred EcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 001055 867 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 946 (1171)
Q Consensus 867 v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLl 946 (1171)
+||++.+++.|+++|+.+. ....||||||||++|||||+++|++||
T Consensus 69 ~~q~~~~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~~p~~ll 114 (166)
T cd03223 69 LPQRPYLPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVF 114 (166)
T ss_pred ECCCCccccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999998888999998642 235799999999999999999999999
Q ss_pred EecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCc
Q 001055 947 LDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSG 997 (1171)
Q Consensus 947 LDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G 997 (1171)
|||||++||+.+.+.+.+.|++. ++|+|++||+++....||++++|++|
T Consensus 115 lDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 115 LDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred EECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 99999999999999999999985 68999999999877679999999865
No 395
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.9e-37 Score=376.00 Aligned_cols=215 Identities=24% Similarity=0.364 Sum_probs=180.5
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH-Hhhhe
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRKIL 864 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~-~r~~i 864 (1171)
.|+++|++++|++. ++|+|+||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 4 ~i~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 4 LLQLKGIDKAFPGV--KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred eEEEeeeEEEeCCe--EEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 38999999999753 6999999999999999999999999999999999999999999999999987655444 35679
Q ss_pred EEEcCCcccccc-cHHhhccCCCC-------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001055 865 GIIPQSPVLFSG-TVRFNLDPFSE-------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 936 (1171)
Q Consensus 865 ~~v~Q~~~lf~~-tv~~nl~~~~~-------~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 936 (1171)
+|+||++.++.. |+++|+.+... ....+.. ..+.+.++.+ |+....+....+||||||||++|||
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~ 154 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMY-----AEADKLLARL--NLRFSSDKLVGELSIGEQQMVEIAK 154 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHH-----HHHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHH
Confidence 999999988865 99999975321 1111111 1233445543 4544456667789999999999999
Q ss_pred HhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 937 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 937 all~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
||+.+|++|||||||++||+.+...+++.|+++. .++|||+||||++.+.. ||+|++|++|++++.|+++++.
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 155 VLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 9999999999999999999999999999998864 46899999999999987 9999999999999999887764
No 396
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=2.9e-37 Score=342.43 Aligned_cols=218 Identities=17% Similarity=0.293 Sum_probs=169.0
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC--CCCCceEEECCEecCCCChHHHh-hh
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV--ELERGRILIDGFDIAKFGLMDLR-KI 863 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~--~p~~G~I~i~g~~i~~~~~~~~r-~~ 863 (1171)
|+++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|++ +|++|+|.++|.++...++...+ ..
T Consensus 2 i~~~nl~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (248)
T PRK09580 2 LSIKDLHVSVEDK--AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEG 79 (248)
T ss_pred eEEEEEEEEeCCe--eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcc
Confidence 7899999999753 6999999999999999999999999999999999994 69999999999998877766554 56
Q ss_pred eEEEcCCcccccc-cHHhhccCC-CC---CCHHHHHHHHH-HhcHHHHHHHccCCcc-hhhhcCC-CCCChhHHHHHHHH
Q 001055 864 LGIIPQSPVLFSG-TVRFNLDPF-SE---HSDADLWEALE-RAHLKDAIRRNSLGLD-AQVSEAG-ENFSVGQRQLLSLS 935 (1171)
Q Consensus 864 i~~v~Q~~~lf~~-tv~~nl~~~-~~---~~~~~i~~~l~-~~~~~~~i~~lp~gl~-~~~~~~~-~~LSgGqkqrl~lA 935 (1171)
++|++|++.++.. |..+++... .. ....+..+..+ ...+.+.++.+ ++. ....... .+||||||||++||
T Consensus 80 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~LS~G~~qrv~la 157 (248)
T PRK09580 80 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALL--KMPEDLLTRSVNVGFSGGEKKRNDIL 157 (248)
T ss_pred eEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHc--CCChhhcccCCCCCCCHHHHHHHHHH
Confidence 9999999977654 544443211 00 00000000000 01122333332 221 1222333 36999999999999
Q ss_pred HHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhh--cCEEEEEeCcEEEEecChhHH
Q 001055 936 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID--CDRILLLDSGRVLEYDTPEEL 1008 (1171)
Q Consensus 936 rall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~--~d~i~vl~~G~i~~~g~~~el 1008 (1171)
||++++|+||||||||++||+.+.+.+.+.|+++.+ ++|||++||+++.+.. ||+|++|++|++++.|+++..
T Consensus 158 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 158 QMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 999999999999999999999999999999988754 6899999999999987 899999999999999998754
No 397
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-37 Score=340.61 Aligned_cols=198 Identities=28% Similarity=0.372 Sum_probs=166.9
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------ecCcEEEEe
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------IRGTVAYVP 233 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------~~~~i~~v~ 233 (1171)
+.|+++|++++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+.. .+..++|++
T Consensus 11 ~~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~ 87 (257)
T PRK11247 11 TPLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMF 87 (257)
T ss_pred CcEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEe
Confidence 46999999999963 57999999999999999999999999999999999999999887532 234699999
Q ss_pred cCCCCCc-ccHHHHHhcCCCC-CHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEE
Q 001055 234 QVSWIFN-ATVRDNILFGSAF-EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFI 311 (1171)
Q Consensus 234 Q~~~l~~-~Tv~eni~~g~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vll 311 (1171)
|++.++. .||+||+.++... ..++..+.++..++.+..+ ....+||||||||++|||||+.+|+++|
T Consensus 88 q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGqkqrl~laraL~~~p~lll 156 (257)
T PRK11247 88 QDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRAN-----------EWPAALSGGQKQRVALARALIHRPGLLL 156 (257)
T ss_pred cCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9998875 7999999876321 2344556666666654433 3346899999999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChh
Q 001055 312 FDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFE 372 (1171)
Q Consensus 312 LDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 372 (1171)
|||||++||+.++..+.+.+.+... .++|+|+||||++++.. ||+|++|++|+++++|+.+
T Consensus 157 LDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 157 LDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999997766533 48999999999999864 8999999999999887654
No 398
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-37 Score=338.47 Aligned_cols=199 Identities=24% Similarity=0.384 Sum_probs=163.9
Q ss_pred CcEEEEeeEEEcCCCC-CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee--------------
Q 001055 161 PAISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------------- 225 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~-~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~-------------- 225 (1171)
+.++++|++|.|+... .+++|+++||+|++||+++|+||||||||||+++|+|+++|++|.+...
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 3589999999997422 2579999999999999999999999999999999999999998854220
Q ss_pred --cCcEEEEecCCCCCc-ccHHHHHhcCC---CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHH
Q 001055 226 --RGTVAYVPQVSWIFN-ATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 295 (1171)
Q Consensus 226 --~~~i~~v~Q~~~l~~-~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrq 295 (1171)
+..|+|++|++.++. .||+||+.++. .... ++..++++..++.+..+ ....+|||||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgG~~q 152 (233)
T PRK11629 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRAN-----------HRPSELSGGERQ 152 (233)
T ss_pred HHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHH
Confidence 145999999998874 69999998631 1111 23445556665543332 334689999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecC
Q 001055 296 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 370 (1171)
Q Consensus 296 Rv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~ 370 (1171)
|++|||||+.+|+++||||||++||+.+++++.+.+.+... +|+|+|+|||+++++..+|++++|++|++++.++
T Consensus 153 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 153 RVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999998766543 5899999999999999889999999999998765
No 399
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=3.1e-37 Score=337.97 Aligned_cols=202 Identities=25% Similarity=0.356 Sum_probs=163.9
Q ss_pred cceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC----CCceEEECCEecCCCChHHHhhheEEEcCCcc-cc-c-
Q 001055 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL----ERGRILIDGFDIAKFGLMDLRKILGIIPQSPV-LF-S- 875 (1171)
Q Consensus 803 ~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p----~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-lf-~- 875 (1171)
+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... ...++.++|+||++. .| .
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57999999999999999999999999999999999999 899999999998653 223467999999995 34 3
Q ss_pred ccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcc---hhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEec
Q 001055 876 GTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD---AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDE 949 (1171)
Q Consensus 876 ~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~---~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDE 949 (1171)
.|+.+|+.... .....+. ...+.+.++.+ +++ +..+..+.+|||||||||+|||||+++|+||||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDE 151 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQA-----RALILEALEAV--GLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADE 151 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHH-----HHHHHHHHHHc--CCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 48888874211 0111110 01123333332 333 45566778899999999999999999999999999
Q ss_pred CCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCC
Q 001055 950 ATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 1013 (1171)
Q Consensus 950 pTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~ 1013 (1171)
||++||+.+.+.+.+.|++..+ ++|||++||+++++.. ||++++|++|++++.|+++++.....
T Consensus 152 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 218 (230)
T TIGR02770 152 PTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPK 218 (230)
T ss_pred CccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcC
Confidence 9999999999999999998753 6899999999999976 99999999999999999999976543
No 400
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.6e-37 Score=332.60 Aligned_cols=189 Identities=30% Similarity=0.459 Sum_probs=159.2
Q ss_pred EEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------ecCcEEEEecC
Q 001055 165 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------IRGTVAYVPQV 235 (1171)
Q Consensus 165 ~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------~~~~i~~v~Q~ 235 (1171)
++|++++|++. +++|+++||++++||+++|+||||||||||+++|+|+++|++|.+.. .+..++|++|+
T Consensus 2 ~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~ 79 (205)
T cd03226 2 IENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQD 79 (205)
T ss_pred cccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecC
Confidence 68999999631 57999999999999999999999999999999999999999986532 12469999999
Q ss_pred CC--CCcccHHHHHhcCCC---CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEE
Q 001055 236 SW--IFNATVRDNILFGSA---FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 310 (1171)
Q Consensus 236 ~~--l~~~Tv~eni~~g~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vl 310 (1171)
+. ++..||+||+.++.. ....+..++++..++.+..+.. ..+||||||||++|||||+.+|+++
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~laral~~~p~ll 148 (205)
T cd03226 80 VDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERH-----------PLSLSGGQKQRLAIAAALLSGKDLL 148 (205)
T ss_pred hhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCC-----------chhCCHHHHHHHHHHHHHHhCCCEE
Confidence 73 567899999987532 1224566677777776544433 3589999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEE
Q 001055 311 IFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVK 366 (1171)
Q Consensus 311 lLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~ 366 (1171)
||||||++||+.+++.+.+.+.....+|+|+|++||+++++.. ||++++|++|+++
T Consensus 149 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 149 IFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999877665568999999999999875 8999999999864
No 401
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-37 Score=344.23 Aligned_cols=206 Identities=31% Similarity=0.457 Sum_probs=173.7
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCc
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 228 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 228 (1171)
+.++++|+++.|+. ..+++|+|+||+|++||+++|+||||||||||+++|+|.++|++|.+.. .+..
T Consensus 4 ~~l~~~~l~~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13635 4 EIIRVEHISFRYPD-AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQ 82 (279)
T ss_pred ceEEEEEEEEEeCC-CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhh
Confidence 35899999999963 2357999999999999999999999999999999999999999886421 1345
Q ss_pred EEEEecCCC--CCcccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHH
Q 001055 229 VAYVPQVSW--IFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 299 (1171)
Q Consensus 229 i~~v~Q~~~--l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~L 299 (1171)
|||++|++. +++.||.|||.++.. ... +++.++++..++.+.++..+ .+|||||||||+|
T Consensus 83 i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~l 151 (279)
T PRK13635 83 VGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAI 151 (279)
T ss_pred eEEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHH
Confidence 999999983 567899999987521 121 33556677777766655444 4899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcc
Q 001055 300 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNG 378 (1171)
Q Consensus 300 AraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~ 378 (1171)
||||+.+|+++||||||++||+.+++++++.+.+...+ |.|+|++||+++++..||||++|++|++++.|+.+++....
T Consensus 152 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13635 152 AGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKSG 231 (279)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcCH
Confidence 99999999999999999999999999999987766544 89999999999999889999999999999999998876543
No 402
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=2.7e-37 Score=338.01 Aligned_cols=198 Identities=27% Similarity=0.412 Sum_probs=163.8
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCC-----CCCCCccce-------------
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL-----PPVSDASAV------------- 224 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~-----~~~~g~~~~------------- 224 (1171)
|+++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|+|++ +|++|.+..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 478999999963 47999999999999999999999999999999999999 898875421
Q ss_pred -ecCcEEEEecCCCCCcccHHHHHhcCCC---C-C----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHH
Q 001055 225 -IRGTVAYVPQVSWIFNATVRDNILFGSA---F-E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 295 (1171)
Q Consensus 225 -~~~~i~~v~Q~~~l~~~Tv~eni~~g~~---~-~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrq 295 (1171)
.+..++|++|++.++..||+||+.++.. . . .++..++++..++.+..+..++ +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 1345999999998888899999987521 1 1 1234455666666544332210 3689999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhH
Q 001055 296 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 373 (1171)
Q Consensus 296 Rv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 373 (1171)
|++|||||+.+|+++||||||++||+.+++++++.+.+...+ +|+|++|||++++.. ||++++|++|++++.|++++
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 999999999999999999999999999999999987766555 899999999998764 89999999999999887654
No 403
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=4.2e-37 Score=329.66 Aligned_cols=194 Identities=24% Similarity=0.334 Sum_probs=164.7
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++||++.|++. ++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.... ..+++.++|
T Consensus 1 l~i~~l~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (201)
T cd03231 1 LEADELTCERDGR--ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLY 77 (201)
T ss_pred CEEEEEEEEeCCc--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEE
Confidence 4689999999753 6999999999999999999999999999999999999999999999999886543 467889999
Q ss_pred EcCCcccc-cccHHhhccCCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001055 867 IPQSPVLF-SGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 944 (1171)
Q Consensus 867 v~Q~~~lf-~~tv~~nl~~~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 944 (1171)
+||++.++ ..|+++|+.++.. ..++.+.++++..++.++ .+....+||||||||++|||||+++|++
T Consensus 78 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~laral~~~p~l 146 (201)
T cd03231 78 LGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGF-----------EDRPVAQLSAGQQRRVALARLLLSGRPL 146 (201)
T ss_pred eccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhh-----------hcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99999876 4699999976432 234455555666555433 2334568999999999999999999999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEE
Q 001055 945 LVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLL 994 (1171)
Q Consensus 945 LlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl 994 (1171)
|||||||++||+.+++.+.+.|++.. +++|+|++||+...+.. |++++++
T Consensus 147 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 147 WILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999999998865 47999999999887665 9999876
No 404
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.4e-37 Score=346.93 Aligned_cols=202 Identities=29% Similarity=0.508 Sum_probs=174.2
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee-----------cCcEE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-----------RGTVA 230 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~-----------~~~i~ 230 (1171)
.+.++|++++|+. ++.+|+||||+|++|+++||+||||||||||+|+|+|++.|++|.+... +.+||
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 81 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIG 81 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheE
Confidence 5788999999973 3679999999999999999999999999999999999999998875432 34699
Q ss_pred EEecCCCCC-cccHHHHHhcCC-----C--CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHH
Q 001055 231 YVPQVSWIF-NATVRDNILFGS-----A--FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 302 (1171)
Q Consensus 231 ~v~Q~~~l~-~~Tv~eni~~g~-----~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAra 302 (1171)
|+||+|.++ ..||+||+.|.. + .+.+++.++++..+|.+.. +....+||+|||||++||+|
T Consensus 82 y~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~a 150 (293)
T COG1131 82 YVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIALA 150 (293)
T ss_pred EEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHHH
Confidence 999999986 689999998741 1 1245677778887776622 12346899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCC-CEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001055 303 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG-KTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 303 L~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~-~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
|+++|++|||||||+||||.++..+++.+.+...+| +||+++||.++.+.. ||||++|++|+++++|+.+++..
T Consensus 151 L~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred HhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 999999999999999999999999999888877766 799999999999987 89999999999999999888653
No 405
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=3.8e-37 Score=350.53 Aligned_cols=201 Identities=25% Similarity=0.404 Sum_probs=167.6
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-----------ecCcEE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVA 230 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~ 230 (1171)
.|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. .+..+|
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~ 80 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIG 80 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEE
Confidence 5899999999963 56999999999999999999999999999999999999999886532 134699
Q ss_pred EEecCCCCC-cccHHHHHhcC-C--CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHH
Q 001055 231 YVPQVSWIF-NATVRDNILFG-S--AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 302 (1171)
Q Consensus 231 ~v~Q~~~l~-~~Tv~eni~~g-~--~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAra 302 (1171)
|+||++.++ ..||+||+.+. . ..+. ++..+.++..++.+.. .....+||||||||++||||
T Consensus 81 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~-----------~~~~~~LSgG~~qrv~la~a 149 (303)
T TIGR01288 81 VVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKA-----------DVRVALLSGGMKRRLTLARA 149 (303)
T ss_pred EEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHh-----------cCchhhCCHHHHHHHHHHHH
Confidence 999999887 67999999742 1 1222 1233344455544332 23346899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001055 303 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 303 L~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
|+.+|+++||||||+|||+.+++++++.+.+...+|+|+|++||+++++.. ||++++|++|+++..|+++++..
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999887765568999999999999875 89999999999999999988754
No 406
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=3e-37 Score=359.57 Aligned_cols=228 Identities=26% Similarity=0.448 Sum_probs=187.3
Q ss_pred cEEEEeeEEEeCCCC--CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC----CceEEECCEecCCCChHH
Q 001055 786 SIKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE----RGRILIDGFDIAKFGLMD 859 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~--~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~----~G~I~i~g~~i~~~~~~~ 859 (1171)
.++++|+++.|.... .++++||||+|.+||++||||.|||||||+.++|.|++++. +|+|.++|.|+..++...
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 489999999996443 25999999999999999999999999999999999999988 899999999998888766
Q ss_pred Hh----hheEEEcCCcc-cccc--cHHhhcc----CCCCCC----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCC
Q 001055 860 LR----KILGIIPQSPV-LFSG--TVRFNLD----PFSEHS----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENF 924 (1171)
Q Consensus 860 ~r----~~i~~v~Q~~~-lf~~--tv~~nl~----~~~~~~----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~L 924 (1171)
.| +.|+||||+|. .++. ||.+.+. .....+ .++..+.++.+++.+ .-.. +..+.+|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~-------~~~~--~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPD-------PERR--DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCC-------hhhh--ccCCccc
Confidence 53 45999999984 4543 6665443 111111 222333444443322 1111 3467899
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeCcEEEE
Q 001055 925 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 1001 (1171)
Q Consensus 925 SgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~ 1001 (1171)
|||||||+.||+||+.+|++||+||||++||+.+++.|.+.|+++. .+.++|+||||+..+.. ||||+||.+|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999987 47999999999999988 99999999999999
Q ss_pred ecChhHHhhcCCChHHHHHHh
Q 001055 1002 YDTPEELLSNEGSSFSKMVQS 1022 (1171)
Q Consensus 1002 ~g~~~el~~~~~~~~~~~~~~ 1022 (1171)
.|+++++++++...|.+..-.
T Consensus 236 ~G~~~~i~~~p~hpYT~~Ll~ 256 (539)
T COG1123 236 TGPTEEILSNPQHPYTRGLLA 256 (539)
T ss_pred ecCHHHHHhccCCcccHHHHh
Confidence 999999999988888866533
No 407
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-37 Score=335.91 Aligned_cols=198 Identities=24% Similarity=0.378 Sum_probs=165.1
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-----------ecCcEEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVAY 231 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~~ 231 (1171)
|+++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+.. .+..++|
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 77 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGI 77 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEE
Confidence 478999999963 57999999999999999999999999999999999999999886432 1235999
Q ss_pred EecCCCCC-cccHHHHHhcCC---CCC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHh
Q 001055 232 VPQVSWIF-NATVRDNILFGS---AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 303 (1171)
Q Consensus 232 v~Q~~~l~-~~Tv~eni~~g~---~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL 303 (1171)
++|++.++ ..||+||+.++. ..+ .++..+.++..++.+..+.. ..+||||||||++|||||
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qr~~la~al 146 (220)
T cd03265 78 VFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRL-----------VKTYSGGMRRRLEIARSL 146 (220)
T ss_pred ecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------hhhCCHHHHHHHHHHHHH
Confidence 99999887 469999997641 111 22345566666665544332 358999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHH
Q 001055 304 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 374 (1171)
Q Consensus 304 ~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 374 (1171)
+.+|+++||||||++||+.+++.+.+.+.+...+ |+|+|++||+++++.. |||+++|++|++++.|+++++
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999999987766554 8999999999999875 799999999999998877653
No 408
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=3.6e-37 Score=340.58 Aligned_cols=199 Identities=29% Similarity=0.435 Sum_probs=165.0
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------ecC
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IRG 227 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------~~~ 227 (1171)
|+++|++++|+. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+.
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 789999999962 357999999999999999999999999999999999999999885421 134
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCCC------------C---HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccCh
Q 001055 228 TVAYVPQVSWIF-NATVRDNILFGSAF------------E---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISG 291 (1171)
Q Consensus 228 ~i~~v~Q~~~l~-~~Tv~eni~~g~~~------------~---~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSG 291 (1171)
.++|+||++.++ ..||+||+.++... . .+++.+.++..++.+.. +....+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKA-----------YQRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhh-----------cCCcccCCH
Confidence 599999999887 57999999875310 1 12334445555554333 234468999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEec
Q 001055 292 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEG 369 (1171)
Q Consensus 292 GqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g 369 (1171)
||||||+|||||+.+|+++||||||++||+.+++++.+.+.+... .|+|+|+|||+++++. .||++++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999999998776544 3899999999999986 48999999999999999
Q ss_pred ChhHH
Q 001055 370 TFEDL 374 (1171)
Q Consensus 370 ~~~~l 374 (1171)
+++++
T Consensus 229 ~~~~~ 233 (243)
T TIGR02315 229 APSEL 233 (243)
T ss_pred CHHHh
Confidence 98876
No 409
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-37 Score=338.00 Aligned_cols=203 Identities=28% Similarity=0.440 Sum_probs=167.3
Q ss_pred EEEEeeEEEcCCCC-CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------ec
Q 001055 163 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IR 226 (1171)
Q Consensus 163 i~~~~~s~~~~~~~-~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------~~ 226 (1171)
|+++|++++|++.. .+++|+++||++++||+++|+||||||||||+++|+|+++|++|.+.. .+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996421 127999999999999999999999999999999999999999885421 13
Q ss_pred CcEEEEecCCCCCc-ccHHHHHhcCCC---CC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHH
Q 001055 227 GTVAYVPQVSWIFN-ATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 298 (1171)
Q Consensus 227 ~~i~~v~Q~~~l~~-~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~ 298 (1171)
..++|+||++.+|. .|++||+.++.. .+ .++..+.++..++.+..+. ...+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADA-----------YPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhc-----------ChhhCCHHHHHHHH
Confidence 46999999999884 799999986421 12 1233445555555544333 33589999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001055 299 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 299 LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
|||||+.+|+++||||||++||+.+++.+++.+.....+ |+|+|++||+++++.. ||++++|++|++++.|+.+++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999999987765544 8999999999999865 89999999999999998877643
No 410
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-36 Score=335.90 Aligned_cols=203 Identities=25% Similarity=0.400 Sum_probs=169.7
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 229 (1171)
.++++|++|+|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+..+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999963 57999999999999999999999999999999999999999886432 13469
Q ss_pred EEEecCCCCCcccHHHHHhcCCCC---CHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccC
Q 001055 230 AYVPQVSWIFNATVRDNILFGSAF---EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 306 (1171)
Q Consensus 230 ~~v~Q~~~l~~~Tv~eni~~g~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~ 306 (1171)
+|++|++.++..||+||+.++... ...+..+.++..++.... ......+||||||||++|||||+.+
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEY----------ATRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHH----------hhCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999998888999999875321 123444555666653211 1234468999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001055 307 SDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 307 ~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
|+++||||||++||+.+++++.+.+..... .|+|+|++||+++++.. ||+|++|++|++++.|+++++...
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTN 222 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcC
Confidence 999999999999999999999987776544 48999999999999875 899999999999999999887654
No 411
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-37 Score=335.51 Aligned_cols=198 Identities=29% Similarity=0.413 Sum_probs=163.3
Q ss_pred EEEEeeEEEcCCCC-CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------ecCcEEEEec
Q 001055 163 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------IRGTVAYVPQ 234 (1171)
Q Consensus 163 i~~~~~s~~~~~~~-~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------~~~~i~~v~Q 234 (1171)
|+++|++++|+... .+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. .+..++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 46899999996311 157999999999999999999999999999999999999999886532 2346999999
Q ss_pred CCCCCc-ccHHHHHhcCCC---CC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccC
Q 001055 235 VSWIFN-ATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 306 (1171)
Q Consensus 235 ~~~l~~-~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~ 306 (1171)
++.++. .||+||+.++.. .. .+++.+.++..++.+..+.. ..+||||||||++|||||+.+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrl~la~al~~~ 149 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAY-----------PHQLSGGMRQRVALARALAVD 149 (220)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------cccCCHHHHHHHHHHHHHHcC
Confidence 998875 799999986521 11 23345566666665544433 358999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEe--CCEEEEecCh
Q 001055 307 SDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVH--EGMVKEEGTF 371 (1171)
Q Consensus 307 ~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~--~G~i~~~g~~ 371 (1171)
|+++||||||++||+.+++.+++.+.+... .++|+|+|||+++++.. ||++++|+ +|+++++++.
T Consensus 150 p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 150 PDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999998776543 48999999999998764 89999999 7999987764
No 412
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=2.4e-37 Score=336.31 Aligned_cols=192 Identities=28% Similarity=0.426 Sum_probs=158.0
Q ss_pred EEEEeeEEEcCCCC-CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------------e
Q 001055 163 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------I 225 (1171)
Q Consensus 163 i~~~~~s~~~~~~~-~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------------~ 225 (1171)
|+++|++++|+... .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999996321 157999999999999999999999999999999999999999886421 1
Q ss_pred cCcEEEEecCCCCCc-ccHHHHHhcCCC---CC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHH
Q 001055 226 RGTVAYVPQVSWIFN-ATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 297 (1171)
Q Consensus 226 ~~~i~~v~Q~~~l~~-~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv 297 (1171)
+..++|++|++.++. .||+||+.++.. .. .+++.+.++..++.+..+ ....+|||||||||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv 149 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLN-----------HYPSELSGGQQQRV 149 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhh-----------cChhhcCHHHHHHH
Confidence 246999999998875 599999987532 11 123445555555544333 33468999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhhcCEEEEEeCCEE
Q 001055 298 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMV 365 (1171)
Q Consensus 298 ~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~~d~i~~l~~G~i 365 (1171)
+|||||+.+|+++||||||++||+.+++++.+.+.+... .++|+|+|||+++++..||++++|++|++
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999998776654 48999999999999888899999999963
No 413
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-37 Score=344.09 Aligned_cols=202 Identities=32% Similarity=0.451 Sum_probs=169.3
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecCcE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGTV 229 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~i 229 (1171)
++++|++++|+. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+.. .+..+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 789999999963 356999999999999999999999999999999999999999885421 12459
Q ss_pred EEEecCCC--CCcccHHHHHhcCCC---CC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHH
Q 001055 230 AYVPQVSW--IFNATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300 (1171)
Q Consensus 230 ~~v~Q~~~--l~~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LA 300 (1171)
+|++|+|. +++.||.|||.++.. .+ .+++.++++..++.+..+. ....||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHR-----------SPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcC-----------CcccCCHHHHHHHHHH
Confidence 99999985 457899999987631 12 1234455666666554433 3468999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001055 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 301 raL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
|||+.+|+++||||||++||+.++..+++.+.+...+|.|+|++||+++.+..|||+++|++|++++.|+.+++...
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999876655568999999999999988999999999999999998887543
No 414
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-37 Score=356.47 Aligned_cols=204 Identities=25% Similarity=0.404 Sum_probs=171.4
Q ss_pred CCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcE
Q 001055 160 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTV 229 (1171)
Q Consensus 160 ~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i 229 (1171)
.+.++++|++++|++ +++|+|+||++++||+++|+|||||||||||++|+|+.+|++|.+.. .++.|
T Consensus 17 ~~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i 93 (377)
T PRK11607 17 TPLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPI 93 (377)
T ss_pred CceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCE
Confidence 446999999999963 46999999999999999999999999999999999999999886432 23469
Q ss_pred EEEecCCCCC-cccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHH
Q 001055 230 AYVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 301 (1171)
Q Consensus 230 ~~v~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAr 301 (1171)
|||+|++.+| ..||.|||.|+.. ... +++.+.++..++.+..+..+ .+|||||||||+|||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRVaLAR 162 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQRVALAR 162 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHH
Confidence 9999999998 5799999998732 121 23445566666655444333 589999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 001055 302 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 302 aL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
||+.+|++|||||||++||+..++++.+.+.+..+ .|.|+|+||||++++. .+||+++|++|++++.|+++++..+
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~ 240 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH 240 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999887766543 4899999999999875 5899999999999999999988754
No 415
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=2.1e-37 Score=338.94 Aligned_cols=194 Identities=26% Similarity=0.411 Sum_probs=161.6
Q ss_pred ceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCccccc-ccHHhhc
Q 001055 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFS-GTVRFNL 882 (1171)
Q Consensus 804 l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~~nl 882 (1171)
|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+||++.+|. .|+++|+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999876443 2489999999887 5999998
Q ss_pred cCC-----CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHH
Q 001055 883 DPF-----SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR 957 (1171)
Q Consensus 883 ~~~-----~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~ 957 (1171)
.+. ....+.+.. ..+.++++. .|++...+....+||||||||++|||||+.+|++|||||||++||+.
T Consensus 76 ~~~~~~~~~~~~~~~~~-----~~~~~~l~~--~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~ 148 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERR-----AIVEEHIAL--VGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDAL 148 (230)
T ss_pred HHHHHhcccCCCHHHHH-----HHHHHHHHH--cCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHH
Confidence 642 112222211 112334444 24555556667789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 958 TDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 958 t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|++.+++
T Consensus 149 ~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 149 TRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 99999999988653 7899999999999877 9999999999999999877663
No 416
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=5.9e-37 Score=330.69 Aligned_cols=193 Identities=23% Similarity=0.376 Sum_probs=163.4
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEEEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 232 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v 232 (1171)
|+++|++++|++ +++|+++||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..++|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 77 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGAL 77 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEe
Confidence 478999999963 57999999999999999999999999999999999999999885432 13359999
Q ss_pred ecCCCCC-cccHHHHHhcCC---CCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCC
Q 001055 233 PQVSWIF-NATVRDNILFGS---AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 308 (1171)
Q Consensus 233 ~Q~~~l~-~~Tv~eni~~g~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~ 308 (1171)
||++.++ ..||+||+.++. ..+.++...+++..++.+..+. ...+|||||||||+|||||+.+|+
T Consensus 78 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al~~~p~ 146 (208)
T cd03268 78 IEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKK-----------KVKGFSLGMKQRLGIALALLGNPD 146 (208)
T ss_pred cCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhh-----------hHhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999886 689999997652 1234556666777777654433 335899999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEec
Q 001055 309 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEG 369 (1171)
Q Consensus 309 vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g 369 (1171)
++||||||++||+.+++.+++.+.+....++|+|++||+++++.. +|++++|++|++++.|
T Consensus 147 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 147 LLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999777655568999999999999875 8999999999988754
No 417
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.6e-37 Score=330.23 Aligned_cols=194 Identities=25% Similarity=0.343 Sum_probs=163.5
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.... ...+++++|
T Consensus 2 l~~~~l~~~~~~~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~ 78 (204)
T PRK13538 2 LEARNLACERDER--ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLY 78 (204)
T ss_pred eEEEEEEEEECCE--EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEE
Confidence 7899999999753 6999999999999999999999999999999999999999999999999987643 456778999
Q ss_pred EcCCccccc-ccHHhhccCCCC----CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001055 867 IPQSPVLFS-GTVRFNLDPFSE----HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 867 v~Q~~~lf~-~tv~~nl~~~~~----~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 941 (1171)
++|++.++. .|+++|+.+... ..++++.++++..++. ...+....+||||||||++|||||+++
T Consensus 79 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~qrl~la~al~~~ 147 (204)
T PRK13538 79 LGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLA-----------GFEDVPVRQLSAGQQRRVALARLWLTR 147 (204)
T ss_pred eCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCH-----------HHhhCChhhcCHHHHHHHHHHHHHhcC
Confidence 999998876 499999964321 1223444455554443 333445678999999999999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhhc-CEEEEE
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDC-DRILLL 994 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~-d~i~vl 994 (1171)
|++|||||||++||+.+.+.+++.|+++. .++|+|++||+++++..| +|++++
T Consensus 148 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 148 APLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999999864 478999999999999874 566665
No 418
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.9e-37 Score=339.18 Aligned_cols=199 Identities=27% Similarity=0.430 Sum_probs=164.1
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------ecC
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IRG 227 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------~~~ 227 (1171)
++++|++++|+. ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+.
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 468999999963 257999999999999999999999999999999999999999885421 123
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCCC------------C---HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccCh
Q 001055 228 TVAYVPQVSWIF-NATVRDNILFGSAF------------E---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISG 291 (1171)
Q Consensus 228 ~i~~v~Q~~~l~-~~Tv~eni~~g~~~------------~---~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSG 291 (1171)
.++|+||++.++ ..||+||+.++... . .++..+.++..++... .+..+.+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDK-----------AYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhh-----------hCCCcccCCH
Confidence 599999999887 57999999864210 1 1223334444444332 2344578999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEec
Q 001055 292 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEG 369 (1171)
Q Consensus 292 GqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g 369 (1171)
||||||+|||||+.+|+++||||||++||+.+++.+++.+.+... .|+|+|++||+++++. .||++++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 999999999999999999999999999999999999998776544 4899999999999988 58999999999999999
Q ss_pred ChhHH
Q 001055 370 TFEDL 374 (1171)
Q Consensus 370 ~~~~l 374 (1171)
+++++
T Consensus 228 ~~~~~ 232 (241)
T cd03256 228 PPAEL 232 (241)
T ss_pred CHHHh
Confidence 88876
No 419
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.4e-37 Score=344.29 Aligned_cols=205 Identities=25% Similarity=0.423 Sum_probs=171.6
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce--------------ec
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IR 226 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------~~ 226 (1171)
+.|+++|++++|+. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+.. .+
T Consensus 4 ~~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~ 81 (283)
T PRK13636 4 YILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81 (283)
T ss_pred ceEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHH
Confidence 36999999999962 357999999999999999999999999999999999999999885421 23
Q ss_pred CcEEEEecCC--CCCcccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHH
Q 001055 227 GTVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 297 (1171)
Q Consensus 227 ~~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv 297 (1171)
..+||+||++ .+++.||+||+.++.. ... +++..+++..++.+..+ ....+||||||||+
T Consensus 82 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LS~G~~qrl 150 (283)
T PRK13636 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKD-----------KPTHCLSFGQKKRV 150 (283)
T ss_pred hhEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------CCcccCCHHHHHHH
Confidence 4699999998 4578899999987521 121 33455566667654433 34568999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHh
Q 001055 298 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLS 375 (1171)
Q Consensus 298 ~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~ 375 (1171)
+|||||+.+|++|||||||++||+.+++.+.+.+.+...+ |+|+|++||+++++. .|||+++|++|++++.|+++++.
T Consensus 151 ~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 230 (283)
T PRK13636 151 AIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230 (283)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999977766544 899999999999987 58999999999999999999886
Q ss_pred hcc
Q 001055 376 NNG 378 (1171)
Q Consensus 376 ~~~ 378 (1171)
...
T Consensus 231 ~~~ 233 (283)
T PRK13636 231 AEK 233 (283)
T ss_pred cCH
Confidence 643
No 420
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.2e-36 Score=330.80 Aligned_cols=199 Identities=48% Similarity=0.802 Sum_probs=172.5
Q ss_pred EEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------------ecC
Q 001055 164 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------IRG 227 (1171)
Q Consensus 164 ~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------------~~~ 227 (1171)
.+.|++|+|+.+ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+.
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 578999999743 57999999999999999999999999999999999999999885422 124
Q ss_pred cEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCC
Q 001055 228 TVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 307 (1171)
Q Consensus 228 ~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~ 307 (1171)
.++|++|++.+++.|++||+.++.....++..++++.+++.+.++..|.++.+.++....+|||||||||+|||||+.+|
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 59999999998888999999987554555566778888888888888888888888888999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHH-HHh-hccCCCEEEEEcCCcchhhhcCEEEEEeCCE
Q 001055 308 DVFIFDDPLSALDAHVGRQVFDR-CIR-GELSGKTRVLVTNQLHFLSQVDRIILVHEGM 364 (1171)
Q Consensus 308 ~vllLDEpts~LD~~~~~~l~~~-l~~-~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~ 364 (1171)
+++||||||++||+.+.+.+++. +++ ....|.|+|++||+.+++..+|++++|++|.
T Consensus 160 ~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 160 NIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999998872 333 3345799999999999998899999999873
No 421
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=9.6e-34 Score=334.24 Aligned_cols=466 Identities=20% Similarity=0.221 Sum_probs=292.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCCh-----hHHHHHHHhhhhhhhhhhHHH
Q 001055 505 NTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPL-----GRIINRFAKDLGDIDRNVAVF 579 (1171)
Q Consensus 505 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~-----G~ii~r~s~Di~~id~~~~~~ 579 (1171)
..+|..+..+.+.+...+.|+......+...-+-+.+.++.+.....|+..... -+.=+|+..|+...-.....+
T Consensus 89 l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l 168 (604)
T COG4178 89 LQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDL 168 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHH
Confidence 345666666677777778888888888888888889999988877444433221 234479999988766544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Q 001055 580 VNMFMGQVSQLLSTFVLIGIVS---------------TMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQF 644 (1171)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 644 (1171)
...++..+..+++...++.-.+ .++.|+++..++....+...+.+....+.-......+.+..-+
T Consensus 169 ~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~L 248 (604)
T COG4178 169 SFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSL 248 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHH
Confidence 4455555544444333332111 1122222111111111111222222222222222334445555
Q ss_pred HHHHccHHHHHHhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhH
Q 001055 645 GEALNGLSTIRAYKAYDRMADINGKSMDKNI----RYTLVNMGANRWLAIRLEIVGGLMIWLTATFAVVQNGSAENQEAF 720 (1171)
Q Consensus 645 ~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 720 (1171)
...-++...|-.|+.|....+.......... +........ .|.......++.++-++...-. ...+..+ +
T Consensus 249 vrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l-~~~~~gy~~~s~v~P~li~ap~-~f~g~i~----~ 322 (604)
T COG4178 249 VRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRL-TWFQLGYGWLSVVLPILIAAPR-YFSGQIT----F 322 (604)
T ss_pred HHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHhhhhhhHHHHHHHHHhccHh-hhcCcCh----H
Confidence 6666778888888877655444443333222 222111111 1222222222222222221111 1111111 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC------CCCCCcccCCCCCCCCCCCCccEEEEeeEE
Q 001055 721 ASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIEL------PSEAPLVIESNRPPPGWPSSGSIKFEDVVL 794 (1171)
Q Consensus 721 ~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~------~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~ 794 (1171)
.-+......+..+...++++...+..+.+..+.+.|+.++... +.+.+.... +........+..|+++|++.
T Consensus 323 -G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~nl~l 400 (604)
T COG4178 323 -GGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTG-RRIDFDDNADHGITLENLSL 400 (604)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCccc-ccccccccccceeEEeeeeE
Confidence 0111111222233344555555556666677788888877532 111111100 00000011145699999999
Q ss_pred EeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccc
Q 001055 795 RYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF 874 (1171)
Q Consensus 795 ~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf 874 (1171)
.-++.. +.|++.+|+|+|||.+-|.|+||||||||+|+|+|+++--+|+|..-. -..+-|+||.|.+-
T Consensus 401 ~~p~~~-~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p 468 (604)
T COG4178 401 RTPDGQ-TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLP 468 (604)
T ss_pred ECCCCC-eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCC
Confidence 987654 789999999999999999999999999999999999999999986541 13588999999999
Q ss_pred cccHHhhccC-CC--CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCC
Q 001055 875 SGTVRFNLDP-FS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 951 (1171)
Q Consensus 875 ~~tv~~nl~~-~~--~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpT 951 (1171)
.||+||-|.+ .. +.+|+++.++|.++++.++++++. +.+. -...||+||||||++||.|+++|++++|||+|
T Consensus 469 ~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~-~~~~----W~~vLS~GEqQRlafARilL~kP~~v~LDEAT 543 (604)
T COG4178 469 QGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLD-EEDR----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEAT 543 (604)
T ss_pred CccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHh-ccCc----HhhhcChhHHHHHHHHHHHHcCCCEEEEecch
Confidence 9999998863 22 268999999999999999999963 2222 34569999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEe
Q 001055 952 AAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLD 995 (1171)
Q Consensus 952 s~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~ 995 (1171)
|+||++++..+++.+++..++.|+|-|+||.....-.++.+-+.
T Consensus 544 sALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 544 SALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred hccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 99999999999999999989999999999987776666655543
No 422
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6e-37 Score=317.49 Aligned_cols=213 Identities=26% Similarity=0.448 Sum_probs=175.1
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecC
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRG 227 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~ 227 (1171)
+.++++|++..|.. -++|++|||++++||+++|+|+||+||||||++|+|..+|.+|.+.. .+.
T Consensus 2 ~mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~ 78 (237)
T COG0410 2 PMLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARL 78 (237)
T ss_pred CceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhC
Confidence 36899999999974 57999999999999999999999999999999999999998876542 234
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccC
Q 001055 228 TVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 306 (1171)
Q Consensus 228 ~i~~v~Q~~~l~-~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~ 306 (1171)
.|+||||.-.+| +.||+||+..|......+ ......+++.++.+|... ...+.++.+|||||||.+||||||..+
T Consensus 79 Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~---~~~~~~~e~v~~lFP~Lk-er~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 79 GIAYVPEGRRIFPRLTVEENLLLGAYARRDK---EAQERDLEEVYELFPRLK-ERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred CeEeCcccccchhhCcHHHHHhhhhhccccc---ccccccHHHHHHHChhHH-HHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 699999999988 789999999874322110 000111333444455322 234667889999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhcchH
Q 001055 307 SDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNGEL 380 (1171)
Q Consensus 307 ~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~ 380 (1171)
|++|+|||||.||-|...+.|++.+.+..++ |.||++|.++..+.- .+||.++|++|+|+.+|+.+++.+++..
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~v 230 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPDV 230 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHHH
Confidence 9999999999999999999999988877654 679999999998865 5799999999999999999999877543
No 423
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=7.4e-37 Score=335.71 Aligned_cols=200 Identities=24% Similarity=0.389 Sum_probs=164.4
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecCcE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGTV 229 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~i 229 (1171)
++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|.++|++|.+.. .+..+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 478999999963 56999999999999999999999999999999999999999886422 12359
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHH
Q 001055 230 AYVPQVSWIFN-ATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 301 (1171)
Q Consensus 230 ~~v~Q~~~l~~-~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAr 301 (1171)
+|++|++.++. .||+||+.++.. ... .++.+.++..++.+. .+....+||||||||++|||
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~la~ 146 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHL-----------RKSKASSLSGGERRRVEIAR 146 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hhCChhhCCHHHHHHHHHHH
Confidence 99999998875 599999986421 111 122334444444332 23445689999999999999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001055 302 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 302 aL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
||+.+|++|||||||++||+.+++.+.+.+.+....++|+|++||+++++.. ||++++|++|++++.|+.+++..
T Consensus 147 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 147 ALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 9999999999999999999999999999776655568999999999988765 79999999999999999887654
No 424
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=7.2e-37 Score=372.07 Aligned_cols=210 Identities=20% Similarity=0.245 Sum_probs=178.2
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 4 l~~~~l~~~~~~~--~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 4 LQISQGTFRLSDT--KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred EEEEeEEEEcCCe--eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 8999999999753 59999999999999999999999999999999999999999999999988876666667788999
Q ss_pred EcCCccc--c-------cccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001055 867 IPQSPVL--F-------SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 937 (1171)
Q Consensus 867 v~Q~~~l--f-------~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 937 (1171)
+||++.+ + ..|+++|+.... ..++++.++++.. |++...+....+||||||||++||||
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~~qrv~la~a 149 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEV-KDPARCEQLAQQF-----------GITALLDRRFKYLSTGETRKTLLCQA 149 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccch-hHHHHHHHHHHHc-----------CCHhhhhCCcccCCHHHHHHHHHHHH
Confidence 9998743 2 347888775321 1122333344443 44444555667899999999999999
Q ss_pred hccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 938 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 938 ll~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
|+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|||+|||+++.+.. ||+|++|++|+++..|+++++..
T Consensus 150 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 150 LMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224 (490)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9999999999999999999999999999998754 6899999999999987 99999999999999999998864
No 425
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=3.9e-37 Score=354.27 Aligned_cols=190 Identities=24% Similarity=0.373 Sum_probs=161.9
Q ss_pred CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------e----cCcEEEEecCCCCCc
Q 001055 177 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------I----RGTVAYVPQVSWIFN 240 (1171)
Q Consensus 177 ~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~----~~~i~~v~Q~~~l~~ 240 (1171)
++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+.. . +..|+||+|++++|+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 457999999999999999999999999999999999999999886432 1 457999999999985
Q ss_pred -ccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEE
Q 001055 241 -ATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIF 312 (1171)
Q Consensus 241 -~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllL 312 (1171)
.||+|||.|+.. .+. ++..+.++..+|....+.. ..+|||||||||+|||||+.+|+++||
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~-----------p~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRY-----------PDELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCC-----------hhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 799999998632 111 3345556666665554443 358999999999999999999999999
Q ss_pred eCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 001055 313 DDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 313 DEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
||||++|||.+++++.+.+.+... .++|+|+||||++++. .||||++|++|++++.|+++++..+
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 999999999999999998877644 4899999999999875 5899999999999999999998765
No 426
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=5.3e-37 Score=332.30 Aligned_cols=189 Identities=31% Similarity=0.532 Sum_probs=157.3
Q ss_pred EEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee-------cCcEEEEecCCC
Q 001055 165 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI-------RGTVAYVPQVSW 237 (1171)
Q Consensus 165 ~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~-------~~~i~~v~Q~~~ 237 (1171)
++|++++|++ +++|+++||++++||+++|+||||||||||+++|+|+++|++|.+... +..++|++|++.
T Consensus 2 ~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~ 78 (213)
T cd03235 2 VEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRS 78 (213)
T ss_pred cccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccc
Confidence 6899999963 469999999999999999999999999999999999999998875431 346999999987
Q ss_pred C---CcccHHHHHhcCCCC--------C---HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHh
Q 001055 238 I---FNATVRDNILFGSAF--------E---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 303 (1171)
Q Consensus 238 l---~~~Tv~eni~~g~~~--------~---~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL 303 (1171)
+ ++.||+||+.++... . .+++.++++..++.+..+. ...+||||||||++|||||
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~la~al 147 (213)
T cd03235 79 IDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADR-----------QIGELSGGQQQRVLLARAL 147 (213)
T ss_pred cccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhC-----------CcccCCHHHHHHHHHHHHH
Confidence 6 458999999875321 1 2344556666676654443 2358999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEe
Q 001055 304 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEE 368 (1171)
Q Consensus 304 ~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~ 368 (1171)
+.+|+++||||||++||+.+++++.+.+.+...+|+|+|++||+++++.. ||++++|++| +++.
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~ 212 (213)
T cd03235 148 VQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVAS 212 (213)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-Eeec
Confidence 99999999999999999999999999877665568999999999999875 7999999886 4443
No 427
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-36 Score=343.77 Aligned_cols=205 Identities=24% Similarity=0.425 Sum_probs=168.4
Q ss_pred cEEEEeeEEEcCCCC--CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------
Q 001055 162 AISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 224 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~--~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------- 224 (1171)
.|+++|++++|++.. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 478999999997321 257999999999999999999999999999999999999999885422
Q ss_pred -ecCcEEEEecCC--CCCcccHHHHHhcCCC---CCH----HHHHHHHHHcCch-HHHhcCCCCCccccCCCCCccChHH
Q 001055 225 -IRGTVAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQ-HDLDLLPGGDVTEIGERGVNISGGQ 293 (1171)
Q Consensus 225 -~~~~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~-~~~~~~~~~~~~~i~~~g~~LSGGq 293 (1171)
.+..|+|++|+| .++..||.|||.++.. ... +++.+.++.+++. ... .....+|||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~~LSgGq 150 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLI-----------SKSPFELSGGQ 150 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHh-----------hCCcccCCHHH
Confidence 123599999998 4677899999987521 121 2334445555553 222 23456899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChh
Q 001055 294 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFE 372 (1171)
Q Consensus 294 rqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~ 372 (1171)
|||++|||||+.+|++|||||||++||+.+++++.+.+.+...+|.|+|++||+++++. .||++++|++|++++.|+++
T Consensus 151 ~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (287)
T PRK13641 151 MRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPK 230 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999987766556899999999999986 58999999999999999998
Q ss_pred HHhhc
Q 001055 373 DLSNN 377 (1171)
Q Consensus 373 ~l~~~ 377 (1171)
++.+.
T Consensus 231 ~~~~~ 235 (287)
T PRK13641 231 EIFSD 235 (287)
T ss_pred HHhcC
Confidence 87654
No 428
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=6.3e-37 Score=331.73 Aligned_cols=193 Identities=31% Similarity=0.457 Sum_probs=160.1
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEEEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 232 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v 232 (1171)
|+++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+..++|+
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~ 77 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMV 77 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEE
Confidence 468999999963 47999999999999999999999999999999999999999886432 12359999
Q ss_pred ecCCCCC-cccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhc
Q 001055 233 PQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 304 (1171)
Q Consensus 233 ~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~ 304 (1171)
+|++.++ ..||+||+.++.. ... +++.+.++..++.+..+. ...+||||||||++|||||+
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qr~~laral~ 146 (213)
T cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDR-----------KPKQLSGGQRQRVALGRAIV 146 (213)
T ss_pred ecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhC-----------ChhhCCHHHHHHHHHHHHHh
Confidence 9999887 5799999987521 122 233444555565544333 33589999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEec
Q 001055 305 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEG 369 (1171)
Q Consensus 305 ~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g 369 (1171)
.+|+++||||||++||+.+++++++.+.+... .++|+|++||+++++.. ||++++|++|++++.|
T Consensus 147 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 147 REPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999998776544 48999999999998875 7999999999998764
No 429
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.3e-36 Score=332.36 Aligned_cols=204 Identities=26% Similarity=0.446 Sum_probs=171.2
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCc
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 228 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 228 (1171)
+.++++|++++|+...++++|+++||+|++|++++|+||||||||||+++|+|+++|++|.+.. .+..
T Consensus 10 ~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 89 (226)
T cd03248 10 GIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSK 89 (226)
T ss_pred ceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhh
Confidence 4699999999997433357999999999999999999999999999999999999999886432 1245
Q ss_pred EEEEecCCCCCcccHHHHHhcCCCC-CHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCC
Q 001055 229 VAYVPQVSWIFNATVRDNILFGSAF-EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 307 (1171)
Q Consensus 229 i~~v~Q~~~l~~~Tv~eni~~g~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~ 307 (1171)
++|++|++.+++.||+||+.++... ....+.+..+...+...++.++.+..+.++....+|||||||||+|||||+.+|
T Consensus 90 i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p 169 (226)
T cd03248 90 VSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNP 169 (226)
T ss_pred EEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 9999999998888999999876432 222333333445566777777666566678888999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEE
Q 001055 308 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMV 365 (1171)
Q Consensus 308 ~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i 365 (1171)
+++||||||++||+.+++++.+.+.... +++|+|++||+++++..||+|++|++|++
T Consensus 170 ~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 170 QVLILDEATSALDAESEQQVQQALYDWP-ERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999776654 36899999999999988999999999863
No 430
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=8.5e-37 Score=331.96 Aligned_cols=196 Identities=23% Similarity=0.394 Sum_probs=161.7
Q ss_pred EEEEeeEEEcCCCC-CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-----------ecCcEE
Q 001055 163 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVA 230 (1171)
Q Consensus 163 i~~~~~s~~~~~~~-~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~ 230 (1171)
|+++|++++|+... .+++|+++||++++||+++|+|+||||||||+++|+|+++|++|.+.. .+..++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 78999999997421 126999999999999999999999999999999999999999886432 234699
Q ss_pred EEecCCCCCc-ccHHHHHhcCCC---CC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHH
Q 001055 231 YVPQVSWIFN-ATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 302 (1171)
Q Consensus 231 ~v~Q~~~l~~-~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAra 302 (1171)
|++|++.++. .||+||+.+... .. .+++.+.++..++.+..+ ....+||||||||++||||
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~lara 150 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLD-----------RRVGGFSTGMRQKVAIARA 150 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-----------hhhhhcCHHHHHHHHHHHH
Confidence 9999998875 699999975321 11 123445566666654433 3446899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEec
Q 001055 303 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEG 369 (1171)
Q Consensus 303 L~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g 369 (1171)
|+.+|+++||||||++||+.+.+++.+.+.+...+|+|+|+|||+++++.. +|++++|++|++++.|
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999999877665568999999999998865 7999999999987653
No 431
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=9.7e-37 Score=332.49 Aligned_cols=200 Identities=29% Similarity=0.502 Sum_probs=162.2
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecCcE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGTV 229 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~i 229 (1171)
|+++|++++|+. +++|+++||++++||+++|+||||||||||+++|+|+++|++|.+.. .+..+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 478999999963 47999999999999999999999999999999999999999886431 13459
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCCC--H---HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHh
Q 001055 230 AYVPQVSWIFN-ATVRDNILFGSAFE--P---ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 303 (1171)
Q Consensus 230 ~~v~Q~~~l~~-~Tv~eni~~g~~~~--~---~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL 303 (1171)
+|+||++.++. .|++||+.++.... . ++....++.. ..++ ...+....+||||||||++|||||
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~------~~l~----~~~~~~~~~LS~G~~qrv~laral 147 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELF------PRLK----ERRKQLAGTLSGGEQQMLAIARAL 147 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHH------Hhhh----hhhhCchhhCCHHHHHHHHHHHHH
Confidence 99999998875 59999998763211 1 1122222222 1111 123345578999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHh
Q 001055 304 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLS 375 (1171)
Q Consensus 304 ~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 375 (1171)
+.+|+++||||||++||+.+++.+++.+.+....++|+|++||+++++.. ||++++|++|++++.|+.+++.
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 148 MSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 99999999999999999999999999877655568999999999998765 8999999999999999887654
No 432
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.2e-36 Score=325.86 Aligned_cols=190 Identities=24% Similarity=0.403 Sum_probs=161.0
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCc
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 228 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 228 (1171)
..++++|++++|+.. .+++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 358999999999742 347999999999999999999999999999999999999999886532 2346
Q ss_pred EEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCC
Q 001055 229 VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 308 (1171)
Q Consensus 229 i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~ 308 (1171)
|+|++|++.+++.||+||+.+......+++.+.++ ++.....||||||||++|||||+.+|+
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p~ 145 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRPR 145 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 99999999998889999998654333333222221 234567899999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecC
Q 001055 309 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 370 (1171)
Q Consensus 309 vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~ 370 (1171)
++||||||++||+.+...+.+.+.+.. +++|+|++||+.+.+..+|++++|++|++++.|+
T Consensus 146 llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 146 VLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 999999999999999999998776653 5899999999999988899999999999988765
No 433
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.3e-38 Score=316.28 Aligned_cols=205 Identities=24% Similarity=0.409 Sum_probs=170.6
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecCc
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 228 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~ 228 (1171)
.+..+|+.++|. .++++++|||+|++||+||+.||||+||||.+.++.|+.+|++|.+.. .|-.
T Consensus 4 ~L~a~~l~K~y~---kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 4 TLVAENLAKSYK---KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred EEEehhhhHhhC---CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 578999999996 468999999999999999999999999999999999999999987532 2335
Q ss_pred EEEEecCCCCC-cccHHHHHhcCCCC---CHH------HHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHH
Q 001055 229 VAYVPQVSWIF-NATVRDNILFGSAF---EPA------RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 298 (1171)
Q Consensus 229 i~~v~Q~~~l~-~~Tv~eni~~g~~~---~~~------~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~ 298 (1171)
|||+||++.+| ..||+|||...... +.. +.+..++..++.+.. ...+.+||||+|+|+.
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr-----------~~~a~sLSGGERRR~E 149 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLR-----------DSKAYSLSGGERRRVE 149 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHh-----------cCcccccccchHHHHH
Confidence 99999999999 68999999854221 111 122334444444433 3445799999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcc-hhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001055 299 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLH-FLSQVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 299 LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~-~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
|||||+.+|++++||||++|+||.+...|-+.+..+..+|..|+++-|+.. .++-|||.+++++|++..+|+++++.++
T Consensus 150 IARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 150 IARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred HHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 999999999999999999999999999998766666777999999999965 5788999999999999999999999887
Q ss_pred chH
Q 001055 378 GEL 380 (1171)
Q Consensus 378 ~~~ 380 (1171)
+..
T Consensus 230 ~~V 232 (243)
T COG1137 230 EDV 232 (243)
T ss_pred hhh
Confidence 543
No 434
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=9.4e-37 Score=332.34 Aligned_cols=193 Identities=23% Similarity=0.399 Sum_probs=158.6
Q ss_pred EEEEeeEEEcCCCC-CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee----------------
Q 001055 163 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI---------------- 225 (1171)
Q Consensus 163 i~~~~~s~~~~~~~-~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~---------------- 225 (1171)
++++|++++|+... .+++|+++||++++|++++|+||||||||||+++|+|+++|++|.+...
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996322 2479999999999999999999999999999999999999998864320
Q ss_pred cCcEEEEecCCCCC-cccHHHHHhcCC---CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHH
Q 001055 226 RGTVAYVPQVSWIF-NATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 297 (1171)
Q Consensus 226 ~~~i~~v~Q~~~l~-~~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv 297 (1171)
+..++|++|++.++ ..||+||+.++. ..+. +++.+.++..++.+..+ ....+|||||||||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv 150 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRIN-----------HRPSELSGGERQRV 150 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHHH
Confidence 14599999999887 579999998642 1221 23344555555544333 33468999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhhcCEEEEEeCCEEE
Q 001055 298 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVK 366 (1171)
Q Consensus 298 ~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~ 366 (1171)
+|||||+.+|++|||||||++||+.+++.+.+.+.+... .++|+|++|||++++..+|++++|++|+++
T Consensus 151 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 151 AIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 999999999999999999999999999999997766543 479999999999999889999999999875
No 435
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=5.1e-37 Score=299.55 Aligned_cols=206 Identities=27% Similarity=0.359 Sum_probs=172.6
Q ss_pred cEEEEeeEEEeCCC--CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---H
Q 001055 786 SIKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---L 860 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~--~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~ 860 (1171)
.|+++++++..+.. .-.+|++|+|.|++||.+|||||||||||||+-+++|+-+|++|+|.+.|+++.+++-+. +
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 48889998887542 236899999999999999999999999999999999999999999999999999888654 3
Q ss_pred h-hheEEEcCCccccc-ccHHhhccCC----CCCC---HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001055 861 R-KILGIIPQSPVLFS-GTVRFNLDPF----SEHS---DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 931 (1171)
Q Consensus 861 r-~~i~~v~Q~~~lf~-~tv~~nl~~~----~~~~---~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqr 931 (1171)
| +++|+|+|...|.+ .|-.||...- .+.. .....+.++++ |+...+...+.+|||||+||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~v-----------GLg~Rl~HyP~qLSGGEQQR 154 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAV-----------GLGKRLTHYPAQLSGGEQQR 154 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHh-----------CcccccccCccccCchHHHH
Confidence 4 56999999998875 4999998631 1111 11223334443 44455555567899999999
Q ss_pred HHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhhcCEEEEEeCcEEEEe
Q 001055 932 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEY 1002 (1171)
Q Consensus 932 l~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~ 1002 (1171)
|+||||+...|+||+-||||-+||.+|-+.|.+.|-.+. .+.|+++||||.....+|||++-|.+|+|++.
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 999999999999999999999999999999999998765 36899999999999999999999999999763
No 436
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=1.1e-36 Score=334.90 Aligned_cols=201 Identities=20% Similarity=0.365 Sum_probs=166.2
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-----------ecCcEEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVAY 231 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~~ 231 (1171)
++++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|.+.. ....++|
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~ 78 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGV 78 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEE
Confidence 789999999963 57999999999999999999999999999999999999999886432 1135999
Q ss_pred EecCCCC-CcccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHh
Q 001055 232 VPQVSWI-FNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 303 (1171)
Q Consensus 232 v~Q~~~l-~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL 303 (1171)
++|++.+ +..|++||+.++.. ... ++..+.++..++... .+....+||||||||++|||||
T Consensus 79 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G~~qrl~laral 147 (236)
T TIGR03864 79 VFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAER-----------ADDKVRELNGGHRRRVEIARAL 147 (236)
T ss_pred eCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hcCChhhCCHHHHHHHHHHHHH
Confidence 9999988 47899999986421 111 122333444444322 3445568999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001055 304 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 304 ~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
+.+|+++||||||++||+.+++++.+.+.+... +|+|+|++||+++++..||++++|++|++++.|+++++...
T Consensus 148 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 148 LHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 999999999999999999999999998776543 58999999999999988999999999999999998877543
No 437
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-37 Score=371.86 Aligned_cols=212 Identities=22% Similarity=0.358 Sum_probs=178.0
Q ss_pred EEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChH-HHhhheEEE
Q 001055 789 FEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM-DLRKILGII 867 (1171)
Q Consensus 789 ~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~-~~r~~i~~v 867 (1171)
++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.. .+++.++|+
T Consensus 1 ~~nl~~~~~~~--~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 1 MSNISKSFPGV--KALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CCceEEEeCCE--EeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 36899999653 699999999999999999999999999999999999999999999999998765543 356789999
Q ss_pred cCCccccc-ccHHhhccCCCC------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 868 PQSPVLFS-GTVRFNLDPFSE------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 868 ~Q~~~lf~-~tv~~nl~~~~~------~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
||++.++. .|+++|+.+... ....+.. ..+.++++.+ |++...+....+|||||||||+|||||+.
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~~ 151 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMY-----RDTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFSY 151 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHH-----HHHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHHh
Confidence 99998775 499999974311 1111111 1234455553 55555566778899999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
+|++|||||||++||+.+.+.+++.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 152 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 152 NAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 999999999999999999999999998875 47899999999999877 9999999999999999988763
No 438
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-36 Score=337.32 Aligned_cols=206 Identities=24% Similarity=0.372 Sum_probs=168.2
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCC-----CCccce-----------
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV-----SDASAV----------- 224 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~-----~g~~~~----------- 224 (1171)
+.++++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|.+..
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (254)
T PRK14273 6 AIIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82 (254)
T ss_pred ceEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccccc
Confidence 46999999999963 46999999999999999999999999999999999999874 664321
Q ss_pred ---ecCcEEEEecCCCCCcccHHHHHhcCCC----CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHH
Q 001055 225 ---IRGTVAYVPQVSWIFNATVRDNILFGSA----FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 293 (1171)
Q Consensus 225 ---~~~~i~~v~Q~~~l~~~Tv~eni~~g~~----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGq 293 (1171)
.+..|+|++|++.++..||+|||.++.. .+. ++...+++.+++.+.+. . ..+....+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~----~~~~~~~~LSgG~ 155 (254)
T PRK14273 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVK---D----KLNTNALSLSGGQ 155 (254)
T ss_pred HHHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhH---H----HHhCCcccCCHHH
Confidence 2345999999999888999999987631 111 22344455555432221 1 1234567999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChh
Q 001055 294 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFE 372 (1171)
Q Consensus 294 rqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 372 (1171)
||||+|||||+.+|+++||||||++||+.+++++++.+.+.. +++|+|++||+++++.. |||+++|++|++++.|+++
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 234 (254)
T PRK14273 156 QQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTD 234 (254)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999777664 47899999999999865 8999999999999999998
Q ss_pred HHhhc
Q 001055 373 DLSNN 377 (1171)
Q Consensus 373 ~l~~~ 377 (1171)
++.++
T Consensus 235 ~~~~~ 239 (254)
T PRK14273 235 ELFFN 239 (254)
T ss_pred HHHhC
Confidence 87643
No 439
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-36 Score=338.12 Aligned_cols=207 Identities=23% Similarity=0.366 Sum_probs=168.5
Q ss_pred CCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCC-----CCCCccce----------
Q 001055 160 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-----PVSDASAV---------- 224 (1171)
Q Consensus 160 ~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~-----~~~g~~~~---------- 224 (1171)
+|.|+++|++++|++ +++|+++||++++||+++|+|+||||||||+++|+|+++ |++|.+..
T Consensus 4 ~~~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 80 (253)
T PRK14242 4 PPKMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHV 80 (253)
T ss_pred CcEEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEcccccc
Confidence 356999999999963 469999999999999999999999999999999999864 46665321
Q ss_pred ----ecCcEEEEecCCCCCcccHHHHHhcCCC---C-C----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChH
Q 001055 225 ----IRGTVAYVPQVSWIFNATVRDNILFGSA---F-E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 292 (1171)
Q Consensus 225 ----~~~~i~~v~Q~~~l~~~Tv~eni~~g~~---~-~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGG 292 (1171)
.+..++|++|++.+|..||+||+.++.. . . .+++...++.+++.+.+. +..+....+||||
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG 153 (253)
T PRK14242 81 DVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGG 153 (253)
T ss_pred CHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHH
Confidence 1346999999998887899999987521 1 1 123444555555543221 1234456789999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecCh
Q 001055 293 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTF 371 (1171)
Q Consensus 293 qrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 371 (1171)
|||||+|||||+.+|+++||||||++||+.++.++.+.+.+.. +++|+|++||+++++.. ||++++|++|++++.|++
T Consensus 154 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~ 232 (253)
T PRK14242 154 QQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPT 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999776653 47899999999999865 899999999999999998
Q ss_pred hHHhhc
Q 001055 372 EDLSNN 377 (1171)
Q Consensus 372 ~~l~~~ 377 (1171)
+++.+.
T Consensus 233 ~~~~~~ 238 (253)
T PRK14242 233 EQIFTR 238 (253)
T ss_pred HHHHcC
Confidence 887543
No 440
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.1e-36 Score=326.11 Aligned_cols=195 Identities=23% Similarity=0.311 Sum_probs=162.1
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....++++++|
T Consensus 2 l~~~~l~~~~~~~--~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~ 78 (200)
T PRK13540 2 LDVIELDFDYHDQ--PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCF 78 (200)
T ss_pred EEEEEEEEEeCCe--eEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEE
Confidence 7899999999753 69999999999999999999999999999999999999999999999998865 34567888999
Q ss_pred EcCCcccc-cccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 001055 867 IPQSPVLF-SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 945 (1171)
Q Consensus 867 v~Q~~~lf-~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iL 945 (1171)
+||++.++ ..|+++|+.+.......+ ..+.+.++.+ ++....+....+||||||||++||||++++|++|
T Consensus 79 ~~q~~~~~~~~tv~~~~~~~~~~~~~~-------~~~~~~l~~~--~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~l 149 (200)
T PRK13540 79 VGHRSGINPYLTLRENCLYDIHFSPGA-------VGITELCRLF--SLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLW 149 (200)
T ss_pred eccccccCcCCCHHHHHHHHHhcCcch-------HHHHHHHHHc--CCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 99999887 469999987432111110 1233444443 2333344555689999999999999999999999
Q ss_pred EEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhhcCEEEE
Q 001055 946 VLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILL 993 (1171)
Q Consensus 946 lLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~v 993 (1171)
||||||++||+.+.+.+.+.|++.. .++|+|++||+.+.+..||.-.+
T Consensus 150 ilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 150 LLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred EEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 9999999999999999999999864 47899999999999999997653
No 441
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.5e-36 Score=332.27 Aligned_cols=196 Identities=24% Similarity=0.379 Sum_probs=162.7
Q ss_pred CcEEEEeeEEEcCCCCC-CCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----e----------
Q 001055 161 PAISIRNGYFSWDSKAE-RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----I---------- 225 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~-~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----~---------- 225 (1171)
+.|+++|++++|++... +++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 36999999999974221 35999999999999999999999999999999999999999886421 0
Q ss_pred --cCcEEEEecCCCCCc-ccHHHHHhcCC---CCC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHH
Q 001055 226 --RGTVAYVPQVSWIFN-ATVRDNILFGS---AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQ 295 (1171)
Q Consensus 226 --~~~i~~v~Q~~~l~~-~Tv~eni~~g~---~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrq 295 (1171)
+..++|++|++.++. .|+.||+.++. ... .+++.+.++..++.+..+..+ .+|||||||
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Ge~q 153 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP-----------AQLSGGEQQ 153 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hhCCHHHHH
Confidence 135999999998874 69999997642 111 234455666777665544333 589999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhhcCEEEEEeCCEEEE
Q 001055 296 RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKE 367 (1171)
Q Consensus 296 Rv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~ 367 (1171)
|++|||||+.+|+++||||||++||+.+.+++++.+.+... .|+|+|++||+++++..||++++|++|++++
T Consensus 154 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~ 226 (228)
T PRK10584 154 RVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQE 226 (228)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999998776544 3889999999999998899999999999875
No 442
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-36 Score=340.59 Aligned_cols=206 Identities=28% Similarity=0.415 Sum_probs=173.8
Q ss_pred cEEEEeeEEEcCCCC---CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------e
Q 001055 162 AISIRNGYFSWDSKA---ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------I 225 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~---~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~ 225 (1171)
.++++|++++|+... ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+.. .
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 589999999997421 357999999999999999999999999999999999999999885421 2
Q ss_pred cCcEEEEecCCC--CCcccHHHHHhcCCC---CC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHH
Q 001055 226 RGTVAYVPQVSW--IFNATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 296 (1171)
Q Consensus 226 ~~~i~~v~Q~~~--l~~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqR 296 (1171)
+..+||+||+|. ++..||.+|+.|+.. .+ .+++.++++.+++....+..+ .+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------ccCCHHHHHH
Confidence 346999999984 566799999988631 12 234556677777766555443 5899999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHh
Q 001055 297 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLS 375 (1171)
Q Consensus 297 v~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 375 (1171)
++|||||+.+|+++||||||++||+.++..+.+.+.+... .|.|+|++||+++++..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999999997776544 489999999999998889999999999999999999886
Q ss_pred hcc
Q 001055 376 NNG 378 (1171)
Q Consensus 376 ~~~ 378 (1171)
...
T Consensus 233 ~~~ 235 (280)
T PRK13633 233 KEV 235 (280)
T ss_pred cCh
Confidence 553
No 443
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.8e-36 Score=328.12 Aligned_cols=195 Identities=24% Similarity=0.344 Sum_probs=163.8
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++|++++|++. ++++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... ..++.++
T Consensus 11 ~l~~~~l~~~~~~~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~ 85 (214)
T PRK13543 11 LLAAHALAFSRNEE--PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMA 85 (214)
T ss_pred eEEEeeEEEecCCc--eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceE
Confidence 49999999999753 699999999999999999999999999999999999999999999999988642 3456799
Q ss_pred EEcCCcccccc-cHHhhccCCC---CC-CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFS---EH-SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~---~~-~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
|++|++.++.. |+++|+.+.. .. .++.+.+.++.. ++....+.....||||||||++||||+++
T Consensus 86 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~laral~~ 154 (214)
T PRK13543 86 YLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIV-----------GLAGYEDTLVRQLSAGQKKRLALARLWLS 154 (214)
T ss_pred EeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHc-----------CChhhccCChhhCCHHHHHHHHHHHHHhc
Confidence 99999988876 9999986421 11 112223333332 34444455567899999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeC
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDS 996 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~ 996 (1171)
+|++|||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||++++++.
T Consensus 155 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 155 PAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 999999999999999999999999998764 46899999999999987 999999864
No 444
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=1.1e-36 Score=341.11 Aligned_cols=203 Identities=23% Similarity=0.358 Sum_probs=167.5
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------e
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------I 225 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------~ 225 (1171)
+.|+++|++++|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. .
T Consensus 6 ~~l~~~~l~~~~~---~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (269)
T PRK11831 6 NLVDMRGVSFTRG---NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTV 82 (269)
T ss_pred ceEEEeCeEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHH
Confidence 3699999999996 357999999999999999999999999999999999999999885421 1
Q ss_pred cCcEEEEecCCCCCc-ccHHHHHhcCC----CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHH
Q 001055 226 RGTVAYVPQVSWIFN-ATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 296 (1171)
Q Consensus 226 ~~~i~~v~Q~~~l~~-~Tv~eni~~g~----~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqR 296 (1171)
+..++|++|++.++. .||.||+.++. ..+. .++...++..++.+..+ ....+||||||||
T Consensus 83 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qr 151 (269)
T PRK11831 83 RKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAK-----------LMPSELSGGMARR 151 (269)
T ss_pred hhcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHHHH
Confidence 345999999998875 59999997641 1122 12333445555543322 2346899999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHH
Q 001055 297 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 374 (1171)
Q Consensus 297 v~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 374 (1171)
|+|||||+.+|+++||||||++||+.+++.+.+.+.+...+ |+|+|+||||++++.. ||++++|++|++++.|+++++
T Consensus 152 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (269)
T PRK11831 152 AALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQAL 231 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999977765443 8999999999999875 799999999999999999988
Q ss_pred hhc
Q 001055 375 SNN 377 (1171)
Q Consensus 375 ~~~ 377 (1171)
.+.
T Consensus 232 ~~~ 234 (269)
T PRK11831 232 QAN 234 (269)
T ss_pred hcC
Confidence 654
No 445
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=9.3e-37 Score=338.75 Aligned_cols=202 Identities=31% Similarity=0.450 Sum_probs=166.8
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-----------------
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------- 224 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------------- 224 (1171)
.++++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 5899999999963 47999999999999999999999999999999999999999885421
Q ss_pred ---ecCcEEEEecCCCCC-cccHHHHHhcCC----CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChH
Q 001055 225 ---IRGTVAYVPQVSWIF-NATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 292 (1171)
Q Consensus 225 ---~~~~i~~v~Q~~~l~-~~Tv~eni~~g~----~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGG 292 (1171)
.+..++|+||++.++ ..||+||+.++. .... +++.+.++..++... .+....+||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LS~G 148 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGK-----------ETSYPRRLSGG 148 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcch-----------hhCChhhCChH
Confidence 134699999999887 579999997641 1111 123334444444322 23345789999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecCh
Q 001055 293 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTF 371 (1171)
Q Consensus 293 qrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 371 (1171)
|||||+|||||+.+|++|||||||++||+.+++++.+.+.+...+|+|+|++||+++++.. ||++++|++|++++.|+.
T Consensus 149 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 228 (250)
T PRK11264 149 QQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPA 228 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999776655568999999999999875 899999999999999998
Q ss_pred hHHhhc
Q 001055 372 EDLSNN 377 (1171)
Q Consensus 372 ~~l~~~ 377 (1171)
+++...
T Consensus 229 ~~~~~~ 234 (250)
T PRK11264 229 KALFAD 234 (250)
T ss_pred HHHhcC
Confidence 887543
No 446
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-36 Score=340.87 Aligned_cols=204 Identities=25% Similarity=0.403 Sum_probs=171.0
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCC---Cccce------------ec
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS---DASAV------------IR 226 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~---g~~~~------------~~ 226 (1171)
.|+++|++|.|+.. .+++|+++||+|++||+++|+||||||||||+++|+|+++|++ |.+.. .+
T Consensus 5 ~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 5 IVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred eEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 58999999999632 3579999999999999999999999999999999999999987 43321 23
Q ss_pred CcEEEEecCCC--CCcccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHH
Q 001055 227 GTVAYVPQVSW--IFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 297 (1171)
Q Consensus 227 ~~i~~v~Q~~~--l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv 297 (1171)
..|||++|++. +++.||+|||.++.. .+. +++.++++.+++....+..+ .+||||||||+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LS~G~~qrv 152 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------ANLSGGQKQRV 152 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------ccCCHHHHHHH
Confidence 46999999984 468899999987621 222 23455667777765544433 58999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhh
Q 001055 298 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 298 ~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
+|||||+.+|+++||||||++||+.+++++.+.+.+... .|+|+|++||+++++..|||+++|++|++++.|+++++..
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999998776544 3899999999999998899999999999999999988765
Q ss_pred c
Q 001055 377 N 377 (1171)
Q Consensus 377 ~ 377 (1171)
.
T Consensus 233 ~ 233 (282)
T PRK13640 233 K 233 (282)
T ss_pred C
Confidence 4
No 447
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-36 Score=339.58 Aligned_cols=205 Identities=22% Similarity=0.341 Sum_probs=171.8
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 229 (1171)
.++++|++++|+....+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+.. .+..+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 589999999997433346999999999999999999999999999999999999999886432 23459
Q ss_pred EEEecCCC--CCcccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHH
Q 001055 230 AYVPQVSW--IFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300 (1171)
Q Consensus 230 ~~v~Q~~~--l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LA 300 (1171)
+|++|++. ++..||.|||.++.. ... +++..+++.+++....+. ....||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTR-----------EPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHHHHHH
Confidence 99999984 567899999987521 122 234556666676554433 3358999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001055 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 301 raL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
|||+.+|+++||||||++||+.+++.+.+.+.+...+ |.|+|++||+++++..||+|++|++|++++.|+++++...
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999987766544 8999999999999988999999999999999999887654
No 448
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.5e-37 Score=341.49 Aligned_cols=200 Identities=28% Similarity=0.407 Sum_probs=165.8
Q ss_pred EEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------------ecC
Q 001055 164 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------IRG 227 (1171)
Q Consensus 164 ~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------------~~~ 227 (1171)
.++|+++.|+ ++++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+.
T Consensus 26 ~~~~~~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTG---QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcC---CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 4567777775 356999999999999999999999999999999999999999885422 124
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCC---CC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHH
Q 001055 228 TVAYVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 299 (1171)
Q Consensus 228 ~i~~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~L 299 (1171)
.++|++|++.++ ..||+||+.++.. .. .+++.+.++..++.+..+..+ .+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHH
Confidence 699999999887 6799999986421 11 133455666677665554443 4899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001055 300 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 300 AraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
||||+.+|+++||||||++||+.+++.+.+.+.+... .|+|+|++||+++++.. ||++++|++|++++.|+++++.+.
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999998776543 48999999999998864 899999999999999999887653
No 449
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-36 Score=338.80 Aligned_cols=205 Identities=30% Similarity=0.441 Sum_probs=170.5
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCc
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 228 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 228 (1171)
+.++++|++++|+. .++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+..
T Consensus 6 ~~l~~~nl~~~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 84 (271)
T PRK13632 6 VMIKVENVSFSYPN-SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKK 84 (271)
T ss_pred eEEEEEeEEEEcCC-CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcc
Confidence 46999999999963 2467999999999999999999999999999999999999999885421 2346
Q ss_pred EEEEecCCC--CCcccHHHHHhcCCC---CCHH----HHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHH
Q 001055 229 VAYVPQVSW--IFNATVRDNILFGSA---FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 299 (1171)
Q Consensus 229 i~~v~Q~~~--l~~~Tv~eni~~g~~---~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~L 299 (1171)
++|++|++. ++..||+||+.++.. .+.+ +..+.++..++.+..+.. ..+||||||||++|
T Consensus 85 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~l 153 (271)
T PRK13632 85 IGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKE-----------PQNLSGGQKQRVAI 153 (271)
T ss_pred eEEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------cccCCHHHHHHHHH
Confidence 999999984 457899999987521 2222 234455666665544433 35899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001055 300 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 300 AraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
||||+.+|+++||||||++||+.+++.+++.+.+...+ ++|+|++||+++++..||++++|++|++++.|+.+++...
T Consensus 154 aral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 154 ASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999987765544 5899999999999888999999999999999998877654
No 450
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.9e-36 Score=335.55 Aligned_cols=204 Identities=27% Similarity=0.403 Sum_probs=166.8
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCC-----CCccce------------
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV-----SDASAV------------ 224 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~-----~g~~~~------------ 224 (1171)
+++++|++++|+. +++++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|.+..
T Consensus 1 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~ 77 (247)
T TIGR00972 1 AIEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDV 77 (247)
T ss_pred CEEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccch
Confidence 3789999999963 46999999999999999999999999999999999999987 775421
Q ss_pred --ecCcEEEEecCCCCCcccHHHHHhcCCC----CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHH
Q 001055 225 --IRGTVAYVPQVSWIFNATVRDNILFGSA----FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 294 (1171)
Q Consensus 225 --~~~~i~~v~Q~~~l~~~Tv~eni~~g~~----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqr 294 (1171)
.+..++|+||++.++..|++||+.++.. ... ++...+++..++...+. ...+....+||||||
T Consensus 78 ~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 150 (247)
T TIGR00972 78 VELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQ 150 (247)
T ss_pred HHHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHH
Confidence 1346999999999888999999987521 111 23344555556542110 112344578999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhH
Q 001055 295 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 373 (1171)
Q Consensus 295 qRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 373 (1171)
||++|||||+.+|+++||||||++||+.++..+++.+.+... ++|+|+|||+++++.. ||++++|++|++++.|++++
T Consensus 151 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 229 (247)
T TIGR00972 151 QRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQ 229 (247)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999987766543 4899999999998865 89999999999999999888
Q ss_pred Hhh
Q 001055 374 LSN 376 (1171)
Q Consensus 374 l~~ 376 (1171)
+..
T Consensus 230 ~~~ 232 (247)
T TIGR00972 230 IFT 232 (247)
T ss_pred HHh
Confidence 754
No 451
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.9e-36 Score=334.05 Aligned_cols=201 Identities=29% Similarity=0.449 Sum_probs=166.8
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce--------------ecCc
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IRGT 228 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------~~~~ 228 (1171)
++++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+.. .+..
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 789999999963 57999999999999999999999999999999999999999885421 1335
Q ss_pred EEEEecCCCCC-cccHHHHHhcCCC----CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHH
Q 001055 229 VAYVPQVSWIF-NATVRDNILFGSA----FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 299 (1171)
Q Consensus 229 i~~v~Q~~~l~-~~Tv~eni~~g~~----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~L 299 (1171)
++|++|++.++ ..||+||+.++.. .+. +++.++++..++....+ ....+||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAH-----------HYPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHh-----------cChhhcCHHHHHHHHH
Confidence 99999999887 5799999987521 111 22334455555543333 3346899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001055 300 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 300 AraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
||||+.+|+++||||||++||+.++.++.+.+.+...+++|+|++||+++++.. ||++++|++|++++.|+++++.+.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 999999999999999999999999999999776655568999999999999875 899999999999999998887543
No 452
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1.6e-36 Score=330.27 Aligned_cols=199 Identities=27% Similarity=0.504 Sum_probs=164.7
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-----------ecCcEEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVAY 231 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~~ 231 (1171)
|+++|+++.|+.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+..++|
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEE
Confidence 4789999999632 257999999999999999999999999999999999999999886432 1345999
Q ss_pred EecCCCCC-cccHHHHHhcCC---CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHh
Q 001055 232 VPQVSWIF-NATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 303 (1171)
Q Consensus 232 v~Q~~~l~-~~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL 303 (1171)
++|++.++ ..||+||+.++. .... +++.+.++..++.+..+ ....+||||||||++|||||
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al 148 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKAN-----------KRARTLSGGMKRKLSLAIAL 148 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-----------ChhhhCCHHHHHHHHHHHHH
Confidence 99999887 689999998642 1111 23445566666654333 23358999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHH
Q 001055 304 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 374 (1171)
Q Consensus 304 ~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 374 (1171)
+.+|+++||||||++||+.+.+++.+.+.+... ++|+|++||+++++.. ||++++|++|++++.|+++++
T Consensus 149 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 149 IGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred hcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 999999999999999999999999997766543 5899999999999875 899999999999999887654
No 453
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-36 Score=328.23 Aligned_cols=193 Identities=24% Similarity=0.414 Sum_probs=159.6
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce--------ecCcEEEEec
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------IRGTVAYVPQ 234 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------~~~~i~~v~Q 234 (1171)
++++|+++.|++ +++|+++||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..++|++|
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q 77 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPE 77 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEecc
Confidence 468999999962 57999999999999999999999999999999999999999886542 1346999999
Q ss_pred CCCCCc-ccHHHHHhcCCC---CC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccC
Q 001055 235 VSWIFN-ATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 306 (1171)
Q Consensus 235 ~~~l~~-~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~ 306 (1171)
++.++. .||+||+.++.. .. .+++.+.++..++....+ ....+||||||||++|||||+.+
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 78 ERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYAN-----------KRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred CCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHh-----------CcHhhCCHHHHHHHHHHHHHhcC
Confidence 998874 699999976421 11 123344555555544332 33468999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEec
Q 001055 307 SDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEG 369 (1171)
Q Consensus 307 ~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g 369 (1171)
|+++||||||++||+.+++++.+.+.+...+++|+|++||+++++.. ||++++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999877655568999999999999865 8999999999987653
No 454
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=9.6e-37 Score=330.56 Aligned_cols=189 Identities=25% Similarity=0.452 Sum_probs=157.9
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------ecC
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IRG 227 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------~~~ 227 (1171)
++++|++++|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+.. .+.
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 789999999952 357999999999999999999999999999999999999999886421 134
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCC---CC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHH
Q 001055 228 TVAYVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 299 (1171)
Q Consensus 228 ~i~~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~L 299 (1171)
.++|++|++.++ ..||+||+.++.. .. .+++.+.++..++.+..+.. ..+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAF-----------PEQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHHHHHHHH
Confidence 699999999887 5799999987521 11 23445556666665443333 35899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCE
Q 001055 300 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGM 364 (1171)
Q Consensus 300 AraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~ 364 (1171)
||||+.+|+++||||||++||+.++.++.+.+.....+++|+|++||+++++.. ||++++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999877655568999999999999875 79999999884
No 455
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-36 Score=335.39 Aligned_cols=203 Identities=27% Similarity=0.428 Sum_probs=165.4
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 230 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 230 (1171)
++++|++++|++. +++|+++||+|++|++++|+||||||||||+++|+|+++|++|.+.. .+..++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4689999999731 56999999999999999999999999999999999999999886432 134699
Q ss_pred EEecCCCCC-cccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHH
Q 001055 231 YVPQVSWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 302 (1171)
Q Consensus 231 ~v~Q~~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAra 302 (1171)
|+||++.++ ..||+||+.++.. .+. +++.+.++..++... ...+..+.+|||||||||+||||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~---------~~~~~~~~~LS~G~~qrv~lara 149 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPA---------EFADRYPHELSGGQQQRVGVARA 149 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcH---------HHHhcChhhCCHHHHHHHHHHHH
Confidence 999999887 5799999986521 111 223344455444320 01234457899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001055 303 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 303 L~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
|+.+|+++||||||++||+.+++++.+.+.+... .|+|+|++||+++++.. ||++++|++|++++.|+++++..
T Consensus 150 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 225 (242)
T cd03295 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILR 225 (242)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHc
Confidence 9999999999999999999999999998776544 38999999999998765 79999999999999998887754
No 456
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-36 Score=369.32 Aligned_cols=211 Identities=26% Similarity=0.368 Sum_probs=176.6
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCCh-HHHhhhe
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL-MDLRKIL 864 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~-~~~r~~i 864 (1171)
.++++|++++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.|
T Consensus 4 ~l~~~~l~~~~~~~--~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i 81 (501)
T PRK11288 4 YLSFDGIGKTFPGV--KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81 (501)
T ss_pred eEEEeeeEEEECCE--EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCE
Confidence 38999999999753 69999999999999999999999999999999999999999999999999875543 3457789
Q ss_pred EEEcCCcccccc-cHHhhccCCCC------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001055 865 GIIPQSPVLFSG-TVRFNLDPFSE------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 937 (1171)
Q Consensus 865 ~~v~Q~~~lf~~-tv~~nl~~~~~------~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 937 (1171)
+|+||++.+|.. |+++|+.+... ....+.. ..+.++++.+ |++...+....+||||||||++||||
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lara 154 (501)
T PRK11288 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLN-----YEAREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAKA 154 (501)
T ss_pred EEEEechhccCCCCHHHHHHhcccccccCCCCHHHHH-----HHHHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHHH
Confidence 999999988865 99999975311 1111111 1234455553 44444456677899999999999999
Q ss_pred hccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecCh
Q 001055 938 LLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 1005 (1171)
Q Consensus 938 ll~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~ 1005 (1171)
|+.+|+||||||||++||+.+.+.+.+.|+++. +++|||+||||++++.. ||+|++|++|+++..++.
T Consensus 155 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 155 LARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 999999999999999999999999999999875 47899999999999877 999999999999877653
No 457
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=2.4e-36 Score=336.57 Aligned_cols=202 Identities=27% Similarity=0.433 Sum_probs=167.5
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-----------------
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------- 224 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------------- 224 (1171)
.++++|+++.|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (257)
T PRK10619 5 KLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKV 81 (257)
T ss_pred cEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccc
Confidence 5899999999963 57999999999999999999999999999999999999999885321
Q ss_pred --------ecCcEEEEecCCCCCc-ccHHHHHhcCC----CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCC
Q 001055 225 --------IRGTVAYVPQVSWIFN-ATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV 287 (1171)
Q Consensus 225 --------~~~~i~~v~Q~~~l~~-~Tv~eni~~g~----~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~ 287 (1171)
.+..++|+||++.++. .||+||+.++. .... ++..+.++..++.... .+....
T Consensus 82 ~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~~ 151 (257)
T PRK10619 82 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QGKYPV 151 (257)
T ss_pred ccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hhCCcc
Confidence 1245999999999874 69999997642 1111 2333445555543322 123456
Q ss_pred ccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEE
Q 001055 288 NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVK 366 (1171)
Q Consensus 288 ~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~ 366 (1171)
+||||||||++|||||+.+|+++||||||++||+.+++++++.+.+....|+|+|+||||++++.. ||||++|++|+++
T Consensus 152 ~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 231 (257)
T PRK10619 152 HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 231 (257)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 899999999999999999999999999999999999999999877665568999999999999986 8999999999999
Q ss_pred EecChhHHhh
Q 001055 367 EEGTFEDLSN 376 (1171)
Q Consensus 367 ~~g~~~~l~~ 376 (1171)
+.|+++++..
T Consensus 232 ~~~~~~~~~~ 241 (257)
T PRK10619 232 EEGAPEQLFG 241 (257)
T ss_pred EeCCHHHhhh
Confidence 9999888754
No 458
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-36 Score=334.56 Aligned_cols=204 Identities=20% Similarity=0.331 Sum_probs=168.4
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCC---CCCCccce------------ec
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP---PVSDASAV------------IR 226 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~---~~~g~~~~------------~~ 226 (1171)
.|+++|+++.|+. +++|+|+||++++||+++|+|+||||||||+++|+|+++ |++|.+.. .+
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 4789999999963 579999999999999999999999999999999999984 57775431 23
Q ss_pred CcEEEEecCCCCCcccHHHHHhcCCCC-----C----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHH
Q 001055 227 GTVAYVPQVSWIFNATVRDNILFGSAF-----E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 297 (1171)
Q Consensus 227 ~~i~~v~Q~~~l~~~Tv~eni~~g~~~-----~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv 297 (1171)
..|+|+||++.+|..||+||+.++... . .+++...++.+++...+.. .....+.+|||||||||
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHH
Confidence 469999999999888999999875211 1 1234455666666443321 12345678999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001055 298 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 298 ~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
+|||||+.+|+++||||||++||+.++.++.+.+.+.. +++|+|+|||+++++.. ||++++|++|++++.|+.+++..
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 230 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS-HNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFE 230 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999776654 48999999999999864 79999999999999999888754
No 459
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-36 Score=338.57 Aligned_cols=201 Identities=23% Similarity=0.380 Sum_probs=166.4
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce--------------ecCc
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IRGT 228 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------~~~~ 228 (1171)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+..
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 789999999963 57999999999999999999999999999999999999999885421 1245
Q ss_pred EEEEecCCC--CCcccHHHHHhcCC---CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHH
Q 001055 229 VAYVPQVSW--IFNATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 299 (1171)
Q Consensus 229 i~~v~Q~~~--l~~~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~L 299 (1171)
|+|++|++. ++..|+.+|+.++. ..+. +++..+++..++.+..+ ....+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRH-----------QPIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhc-----------CCchhCCHHHHHHHHH
Confidence 999999985 45678999998641 1122 22334555556544332 2346899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001055 300 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 300 AraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
||||+.+|+++||||||++||+.++.++.+.+.+...+|+|+|+|||+++++.. ||++++|++|++++.|+++++...
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999877665568999999999999865 899999999999999998887654
No 460
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-36 Score=330.57 Aligned_cols=203 Identities=26% Similarity=0.375 Sum_probs=165.2
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecC
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRG 227 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~ 227 (1171)
+.|+++|++++|+. +++|+++||++++||+++|+||||||||||+++|+|+++|++|.+.. .+.
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~ 80 (237)
T PRK11614 4 VMLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMRE 80 (237)
T ss_pred cEEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHh
Confidence 36899999999963 57999999999999999999999999999999999999999885421 134
Q ss_pred cEEEEecCCCCCc-ccHHHHHhcCCC-CCHHH----HHHHHHHc-CchHHHhcCCCCCccccCCCCCccChHHHHHHHHH
Q 001055 228 TVAYVPQVSWIFN-ATVRDNILFGSA-FEPAR----YEKAIDVT-SLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300 (1171)
Q Consensus 228 ~i~~v~Q~~~l~~-~Tv~eni~~g~~-~~~~~----~~~~~~~~-~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LA 300 (1171)
.++|++|++.+|. .||.||+.++.. ..... ..++++.. ++.+ .......+||||||||++||
T Consensus 81 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~-----------~~~~~~~~LS~G~~qrl~la 149 (237)
T PRK11614 81 AVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHE-----------RRIQRAGTMSGGEQQMLAIG 149 (237)
T ss_pred CEEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHH-----------HHhCchhhCCHHHHHHHHHH
Confidence 5999999998875 699999987532 11111 12222222 1111 12234568999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 001055 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 301 raL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
|||+.+|+++||||||++||+.+++.+.+.+.+...+|+|+|++||+++++. .|||+++|++|++++.|+++++...
T Consensus 150 ~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 150 RALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227 (237)
T ss_pred HHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence 9999999999999999999999999999987766556899999999999876 4799999999999999999888643
No 461
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=2.7e-36 Score=345.46 Aligned_cols=207 Identities=22% Similarity=0.334 Sum_probs=169.3
Q ss_pred CcEEEEeeEEEcCCCC----------CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------
Q 001055 161 PAISIRNGYFSWDSKA----------ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------ 224 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~----------~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------ 224 (1171)
+.++++|++++|+.+. ..++++||||+|++||+++|+|+||||||||+++|+|+++|++|.+..
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence 4699999999996321 246999999999999999999999999999999999999999885421
Q ss_pred ---------ecCcEEEEecCC--CCC-cccHHHHHhcCC-----CCCH----HHHHHHHHHcCchHHHhcCCCCCccccC
Q 001055 225 ---------IRGTVAYVPQVS--WIF-NATVRDNILFGS-----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIG 283 (1171)
Q Consensus 225 ---------~~~~i~~v~Q~~--~l~-~~Tv~eni~~g~-----~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 283 (1171)
.++.|+||+|+| .++ ..||.|||.++. ..+. ++..+.++..++... ..+
T Consensus 87 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~----------~~~ 156 (331)
T PRK15079 87 GMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPN----------LIN 156 (331)
T ss_pred cCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChH----------Hhc
Confidence 235699999998 465 689999997531 1222 223344555555321 123
Q ss_pred CCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEe
Q 001055 284 ERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVH 361 (1171)
Q Consensus 284 ~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~ 361 (1171)
....+|||||||||+|||||+.+|++||+||||++||+.++..+.+.+.+... .|.|+|+||||+.++.. ||||++|+
T Consensus 157 ~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~ 236 (331)
T PRK15079 157 RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMY 236 (331)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 34468999999999999999999999999999999999999999998776654 38999999999999975 89999999
Q ss_pred CCEEEEecChhHHhhc
Q 001055 362 EGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 362 ~G~i~~~g~~~~l~~~ 377 (1171)
+|++++.|+.+++..+
T Consensus 237 ~G~ive~g~~~~i~~~ 252 (331)
T PRK15079 237 LGHAVELGTYDEVYHN 252 (331)
T ss_pred CCEEEEEcCHHHHHcC
Confidence 9999999999998765
No 462
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-36 Score=333.00 Aligned_cols=200 Identities=28% Similarity=0.440 Sum_probs=165.2
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-----------------
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------- 224 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------------- 224 (1171)
.++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+..
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 4789999999963 57999999999999999999999999999999999999999885432
Q ss_pred -ecCcEEEEecCCCCC-cccHHHHHhcCC----CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHH
Q 001055 225 -IRGTVAYVPQVSWIF-NATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 294 (1171)
Q Consensus 225 -~~~~i~~v~Q~~~l~-~~Tv~eni~~g~----~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqr 294 (1171)
.+..|+|+||++.++ ..||.||+.++. .... +++.+.++..++....+ ....+||||||
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~ 147 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYAD-----------RFPLHLSGGQQ 147 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CChhhCCHHHH
Confidence 123599999999887 469999996421 1111 22334445555544333 33468999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhH
Q 001055 295 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 373 (1171)
Q Consensus 295 qRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 373 (1171)
||++|||||+.+|+++||||||++||+.+++++.+.+.+...+|+|+|++||+++++.. +|++++|++|++++.|++++
T Consensus 148 qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 227 (242)
T PRK11124 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999776655568999999999999875 89999999999999998877
Q ss_pred Hh
Q 001055 374 LS 375 (1171)
Q Consensus 374 l~ 375 (1171)
+.
T Consensus 228 ~~ 229 (242)
T PRK11124 228 FT 229 (242)
T ss_pred hc
Confidence 64
No 463
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-36 Score=340.00 Aligned_cols=206 Identities=24% Similarity=0.424 Sum_probs=167.2
Q ss_pred cEEEEeeEEEcCCCC--CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------
Q 001055 162 AISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 224 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~--~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------- 224 (1171)
.|+++|++++|+... .+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 378999999997421 146999999999999999999999999999999999999999886422
Q ss_pred -ecCcEEEEecCC--CCCcccHHHHHhcCCC---CCHHH----HHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHH
Q 001055 225 -IRGTVAYVPQVS--WIFNATVRDNILFGSA---FEPAR----YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 294 (1171)
Q Consensus 225 -~~~~i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqr 294 (1171)
.+..|+|++|++ .+++.||+||+.++.. .+.+. ..++++..++... .......+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG~~ 151 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISES----------LFEKNPFELSGGQM 151 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------hhhCCcccCCHHHH
Confidence 123599999997 5677899999987521 12222 2333444444321 12344568999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhH
Q 001055 295 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 373 (1171)
Q Consensus 295 qRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 373 (1171)
||++|||||+.+|++|||||||++||+.+++.+.+.+.+....++|+|++||+++++.. ||++++|++|++++.|++++
T Consensus 152 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (280)
T PRK13649 152 RRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKD 231 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999877665558999999999999865 89999999999999999888
Q ss_pred Hhhc
Q 001055 374 LSNN 377 (1171)
Q Consensus 374 l~~~ 377 (1171)
+...
T Consensus 232 ~~~~ 235 (280)
T PRK13649 232 IFQD 235 (280)
T ss_pred HhcC
Confidence 7654
No 464
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-36 Score=323.50 Aligned_cols=198 Identities=29% Similarity=0.461 Sum_probs=171.1
Q ss_pred cEEEEeeEEEeCCCC-------CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChH
Q 001055 786 SIKFEDVVLRYRPEL-------PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~-------~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~ 858 (1171)
.++++|+++.|+... ..+++||||+|++||++||||.|||||||+.++|+|+++|++|+|.++|.|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 389999999996432 26899999999999999999999999999999999999999999999999986654
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHH-HHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKD-AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 937 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~-~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 937 (1171)
.....+++.+.++.+++.+ ++. +...+|||||+||++||||
T Consensus 82 ---------------------------~~~~~~~v~elL~~Vgl~~~~~~-----------ryPhelSGGQrQRi~IARA 123 (268)
T COG4608 82 ---------------------------KEERRERVLELLEKVGLPEEFLY-----------RYPHELSGGQRQRIGIARA 123 (268)
T ss_pred ---------------------------hhHHHHHHHHHHHHhCCCHHHhh-----------cCCcccCchhhhhHHHHHH
Confidence 1112345777777776543 333 4446899999999999999
Q ss_pred hccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCC
Q 001055 938 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 1014 (1171)
Q Consensus 938 ll~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~ 1014 (1171)
|+-+|+++++|||||+||.-.++.+.+.|.++.+ +-|.++||||++.+.. ||||.||..|+|+|.|+.+++..++..
T Consensus 124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~H 203 (268)
T COG4608 124 LALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLH 203 (268)
T ss_pred HhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCC
Confidence 9999999999999999999999999999988763 7899999999999998 999999999999999999999998888
Q ss_pred hHHHHHHhh
Q 001055 1015 SFSKMVQST 1023 (1171)
Q Consensus 1015 ~~~~~~~~~ 1023 (1171)
.|.+..-+.
T Consensus 204 pYTk~Ll~a 212 (268)
T COG4608 204 PYTKALLSA 212 (268)
T ss_pred HHHHHHHHh
Confidence 887665543
No 465
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.3e-36 Score=368.61 Aligned_cols=213 Identities=23% Similarity=0.405 Sum_probs=177.0
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCceEEECCEecCCCChHH-Hhhh
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--ERGRILIDGFDIAKFGLMD-LRKI 863 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p--~~G~I~i~g~~i~~~~~~~-~r~~ 863 (1171)
++++|++++|++. ++|+|+||++++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+... .++.
T Consensus 2 l~i~~l~~~~~~~--~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (500)
T TIGR02633 2 LEMKGIVKTFGGV--KALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79 (500)
T ss_pred EEEEeEEEEeCCe--EeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCC
Confidence 7899999999643 699999999999999999999999999999999999987 7999999999998766554 4567
Q ss_pred eEEEcCCcccccc-cHHhhccCCCC-------CCHHHHHHHHHHhcHHHHHHHccCCcchhh-hcCCCCCChhHHHHHHH
Q 001055 864 LGIIPQSPVLFSG-TVRFNLDPFSE-------HSDADLWEALERAHLKDAIRRNSLGLDAQV-SEAGENFSVGQRQLLSL 934 (1171)
Q Consensus 864 i~~v~Q~~~lf~~-tv~~nl~~~~~-------~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~-~~~~~~LSgGqkqrl~l 934 (1171)
|+||||++.+|.. |+++|+.+... ....+.. ..+.++++.+ |+.... .....+|||||||||+|
T Consensus 80 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~i 152 (500)
T TIGR02633 80 IVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMY-----LRAKNLLREL--QLDADNVTRPVGDYGGGQQQLVEI 152 (500)
T ss_pred EEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHH-----HHHHHHHHHc--CCCCCcccCchhhCCHHHHHHHHH
Confidence 9999999988765 99999864321 1111111 1233445543 443322 34467899999999999
Q ss_pred HHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHH
Q 001055 935 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1008 (1171)
Q Consensus 935 Arall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 1008 (1171)
||||+.+|+||||||||++||+.+...+.+.|+++. +++|||+||||++++.. ||+|++|++|+++..|+++++
T Consensus 153 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 153 AKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 999999999999999999999999999999998865 46899999999999987 999999999999999987765
No 466
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-36 Score=337.84 Aligned_cols=203 Identities=29% Similarity=0.446 Sum_probs=170.0
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 229 (1171)
.++++|++++|+. .+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+.. .+..+
T Consensus 3 ~l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSG--SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCC--CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 5889999999963 246999999999999999999999999999999999999999886432 12359
Q ss_pred EEEecCCC--CCcccHHHHHhcCC---CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHH
Q 001055 230 AYVPQVSW--IFNATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300 (1171)
Q Consensus 230 ~~v~Q~~~--l~~~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LA 300 (1171)
+|++|++. +++.||.||+.++. ..+. +++.+.++..++.+..+.. ...||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~Gq~qrl~la 149 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRV-----------PHHLSGGEKKRVAIA 149 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCC-----------cccCCHHHHHHHHHH
Confidence 99999984 56789999998652 1222 2345556666666544433 358999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 001055 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 301 raL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
|||+.+|+++||||||++||+.+++.+++.+.....+ |.|+|++||+++++. .|||+++|++|++++.|+++++.+.
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 9999999999999999999999999999987765544 899999999999985 5899999999999999999988654
No 467
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-36 Score=340.75 Aligned_cols=207 Identities=24% Similarity=0.394 Sum_probs=166.2
Q ss_pred cEEEEeeEEEcCCCC--CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------
Q 001055 162 AISIRNGYFSWDSKA--ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 224 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~--~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------- 224 (1171)
.|+++|++++|+.+. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+..
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 85 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEV 85 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccH
Confidence 589999999997432 135999999999999999999999999999999999999999885421
Q ss_pred --ecCcEEEEecCCC--CCcccHHHHHhcCCC---CCHH----HHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHH
Q 001055 225 --IRGTVAYVPQVSW--IFNATVRDNILFGSA---FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 293 (1171)
Q Consensus 225 --~~~~i~~v~Q~~~--l~~~Tv~eni~~g~~---~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGq 293 (1171)
.+..|+|++|++. ++..||+||+.++.. .... ++...++..++... ..+....+|||||
T Consensus 86 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~----------~~~~~~~~LS~Gq 155 (289)
T PRK13645 86 KRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPED----------YVKRSPFELSGGQ 155 (289)
T ss_pred HHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChh----------HhcCChhhCCHHH
Confidence 1335999999984 567799999987531 1221 12233344443211 1234457899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecCh
Q 001055 294 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTF 371 (1171)
Q Consensus 294 rqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 371 (1171)
|||++|||||+.+|++|||||||++||+.+++.+++.+.+... .|+|+|+|||+++++.. ||++++|++|++++.|++
T Consensus 156 ~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~ 235 (289)
T PRK13645 156 KRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSP 235 (289)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999987766544 48999999999998764 899999999999999998
Q ss_pred hHHhhcc
Q 001055 372 EDLSNNG 378 (1171)
Q Consensus 372 ~~l~~~~ 378 (1171)
+++.+..
T Consensus 236 ~~~~~~~ 242 (289)
T PRK13645 236 FEIFSNQ 242 (289)
T ss_pred HHHhcCH
Confidence 8876543
No 468
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-36 Score=334.76 Aligned_cols=201 Identities=26% Similarity=0.440 Sum_probs=168.1
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 229 (1171)
.++++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+.. .+..+
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 78 (255)
T PRK11231 2 TLRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRL 78 (255)
T ss_pred EEEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhhe
Confidence 4889999999963 57999999999999999999999999999999999999999886432 12359
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCC-----C---C---HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHH
Q 001055 230 AYVPQVSWIFN-ATVRDNILFGSA-----F---E---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 297 (1171)
Q Consensus 230 ~~v~Q~~~l~~-~Tv~eni~~g~~-----~---~---~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv 297 (1171)
+|++|++.++. .|+.||+.++.. . . .+++..+++..++.+..+ .....||||||||+
T Consensus 79 ~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv 147 (255)
T PRK11231 79 ALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLAD-----------RRLTDLSGGQRQRA 147 (255)
T ss_pred EEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHc-----------CCcccCCHHHHHHH
Confidence 99999998874 599999987521 0 1 123445566666654433 23468999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001055 298 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 298 ~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
+|||||+.+|++|||||||++||+.+++.+.+.+.....+|+|+|++||+++++.. ||++++|++|+++..|+.+++..
T Consensus 148 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 148 FLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 99999999999999999999999999999999876655568999999999999865 79999999999999999888754
No 469
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-36 Score=330.96 Aligned_cols=201 Identities=21% Similarity=0.374 Sum_probs=165.6
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecCc
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 228 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~ 228 (1171)
.++++|++++|+. +++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 5899999999963 57999999999999999999999999999999999999999886432 1346
Q ss_pred EEEEecCCCCCc-ccHHHHHhcCCC----CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHH
Q 001055 229 VAYVPQVSWIFN-ATVRDNILFGSA----FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 299 (1171)
Q Consensus 229 i~~v~Q~~~l~~-~Tv~eni~~g~~----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~L 299 (1171)
++|++|++.++. .||.||+.++.. .+. .++.+.++..++... ......+||||||||++|
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~l 148 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHL-----------RDSMGQSLSGGERRRVEI 148 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHH-----------hhcchhhCCHHHHHHHHH
Confidence 999999998875 699999987521 111 122333344343322 234457899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001055 300 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 300 AraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
||||+.+|++|||||||++||+.+++++.+.+......|+|+|++||+++++.. ||++++|++|++++.|+++++..
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 149 ARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 999999999999999999999999999988776655568999999999988765 79999999999999999988754
No 470
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=2.4e-36 Score=343.41 Aligned_cols=200 Identities=23% Similarity=0.434 Sum_probs=168.2
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-----------ecCcEE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVA 230 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~ 230 (1171)
.++++|++++|+ ++.+|+|+||++++||++||+||||||||||+++|+|+++|++|.+.. .+..+|
T Consensus 2 ~l~~~~l~~~~~---~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig 78 (301)
T TIGR03522 2 SIRVSSLTKLYG---TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEEEC---CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceE
Confidence 478999999996 356999999999999999999999999999999999999999986532 234699
Q ss_pred EEecCCCCC-cccHHHHHhcCC---CCC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHH
Q 001055 231 YVPQVSWIF-NATVRDNILFGS---AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 302 (1171)
Q Consensus 231 ~v~Q~~~l~-~~Tv~eni~~g~---~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAra 302 (1171)
|+||++.++ ..||.||+.+.. ... .++..+.++..++.+..+ .....||||||||++||||
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS~G~~qrv~la~a 147 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQH-----------KKIGQLSKGYRQRVGLAQA 147 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-----------CchhhCCHHHHHHHHHHHH
Confidence 999999987 569999997532 111 233455555556554432 3346899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001055 303 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 303 L~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
|+++|+++||||||+|||+.+++++++.+.... +++|+|++||+++++.. ||||++|++|++++.|+.+++..
T Consensus 148 l~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 148 LIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG-KDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 999999999999999999999999999776654 47999999999999875 89999999999999999998754
No 471
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=4.7e-36 Score=331.42 Aligned_cols=200 Identities=20% Similarity=0.350 Sum_probs=165.2
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecCc
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 228 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~ 228 (1171)
.|+++|+++.|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+.. .+..
T Consensus 2 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T TIGR03411 2 ILYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78 (242)
T ss_pred eEEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcC
Confidence 4889999999963 47999999999999999999999999999999999999999885432 1235
Q ss_pred EEEEecCCCCCc-ccHHHHHhcCCCCC---------------HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChH
Q 001055 229 VAYVPQVSWIFN-ATVRDNILFGSAFE---------------PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 292 (1171)
Q Consensus 229 i~~v~Q~~~l~~-~Tv~eni~~g~~~~---------------~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGG 292 (1171)
++|++|++.++. .||+||+.++.... .+++...++..++.+ .......+||||
T Consensus 79 i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G 147 (242)
T TIGR03411 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLAD-----------EADRLAGLLSHG 147 (242)
T ss_pred eeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCch-----------hhcCChhhCCHH
Confidence 999999998885 59999998753210 112233333333332 233455789999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecCh
Q 001055 293 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTF 371 (1171)
Q Consensus 293 qrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~ 371 (1171)
|||||+|||||+.+|+++||||||++||+.+++.+++.+.+... ++|+|++||+++++.. ||+|++|++|++++.|+.
T Consensus 148 e~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~ 226 (242)
T TIGR03411 148 QKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSL 226 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCH
Confidence 99999999999999999999999999999999999997766543 6899999999999875 899999999999999998
Q ss_pred hHHhh
Q 001055 372 EDLSN 376 (1171)
Q Consensus 372 ~~l~~ 376 (1171)
+++..
T Consensus 227 ~~~~~ 231 (242)
T TIGR03411 227 DQVQA 231 (242)
T ss_pred HHHhc
Confidence 88764
No 472
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=6.2e-36 Score=333.00 Aligned_cols=201 Identities=29% Similarity=0.430 Sum_probs=167.8
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 229 (1171)
.|+++|++++|+. +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..+
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (258)
T PRK13548 2 MLEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR 78 (258)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhhe
Confidence 4789999999963 57999999999999999999999999999999999999999886432 12359
Q ss_pred EEEecCCCC-CcccHHHHHhcCCC-C--C----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHH
Q 001055 230 AYVPQVSWI-FNATVRDNILFGSA-F--E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 301 (1171)
Q Consensus 230 ~~v~Q~~~l-~~~Tv~eni~~g~~-~--~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAr 301 (1171)
+|++|++.+ +..||+||+.++.. . . ..+..++++..++.+..+ ....+|||||||||+|||
T Consensus 79 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGe~qrv~la~ 147 (258)
T PRK13548 79 AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAG-----------RDYPQLSGGEQQRVQLAR 147 (258)
T ss_pred EEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHH
Confidence 999999987 57899999987532 1 1 123445566666654333 234689999999999999
Q ss_pred Hhc------cCCCEEEEeCcCCCCCHHHHHHHHHHHHhhc-cCCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhH
Q 001055 302 AVY------SNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFED 373 (1171)
Q Consensus 302 aL~------~~~~vllLDEpts~LD~~~~~~l~~~l~~~~-~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 373 (1171)
||+ .+|+++||||||++||+.+++.+.+.+.+.. ..|+|+|++||+++++. .||++++|++|++++.|++++
T Consensus 148 al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (258)
T PRK13548 148 VLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227 (258)
T ss_pred HHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHH
Confidence 999 5999999999999999999999998777655 46899999999999987 589999999999999999888
Q ss_pred Hhh
Q 001055 374 LSN 376 (1171)
Q Consensus 374 l~~ 376 (1171)
+..
T Consensus 228 ~~~ 230 (258)
T PRK13548 228 VLT 230 (258)
T ss_pred HhC
Confidence 764
No 473
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.2e-36 Score=334.54 Aligned_cols=202 Identities=21% Similarity=0.364 Sum_probs=165.6
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecCc
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGT 228 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~ 228 (1171)
.++++|+++.|+. +++|+++||++++|++++|+|+||||||||+++|+|+++|++|.+.. .+..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 5999999999963 57999999999999999999999999999999999999999885421 1234
Q ss_pred EEEEecCCCCCc-ccHHHHHhcCCCC----------------C---H---HHHHHHHHHcCchHHHhcCCCCCccccCCC
Q 001055 229 VAYVPQVSWIFN-ATVRDNILFGSAF----------------E---P---ARYEKAIDVTSLQHDLDLLPGGDVTEIGER 285 (1171)
Q Consensus 229 i~~v~Q~~~l~~-~Tv~eni~~g~~~----------------~---~---~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~ 285 (1171)
++|++|++.++. .||+||+.++... . . +++.+.++..++.. ..+..
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~ 150 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLE-----------HANRQ 150 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhh-----------hhhCC
Confidence 899999999875 6999999875210 0 0 11222233333322 23455
Q ss_pred CCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhh-cCEEEEEeCC
Q 001055 286 GVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEG 363 (1171)
Q Consensus 286 g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~-~d~i~~l~~G 363 (1171)
..+||||||||++|||||+.+|++|||||||++||+.+++.+.+.+.+...+ |+|+|++||+++++.. ||++++|++|
T Consensus 151 ~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g 230 (255)
T PRK11300 151 AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQG 230 (255)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 6789999999999999999999999999999999999999999987766544 8999999999999865 8999999999
Q ss_pred EEEEecChhHHhhc
Q 001055 364 MVKEEGTFEDLSNN 377 (1171)
Q Consensus 364 ~i~~~g~~~~l~~~ 377 (1171)
++++.|+.+++.+.
T Consensus 231 ~i~~~~~~~~~~~~ 244 (255)
T PRK11300 231 TPLANGTPEEIRNN 244 (255)
T ss_pred eEEecCCHHHHhhC
Confidence 99999998887543
No 474
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=100.00 E-value=1.6e-34 Score=376.36 Aligned_cols=94 Identities=14% Similarity=0.231 Sum_probs=85.4
Q ss_pred hhcCCCCCChhHHHHHHHHHHhccCC--CEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhhcCEEEE
Q 001055 917 VSEAGENFSVGQRQLLSLSRALLRRS--KILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIIDCDRILL 993 (1171)
Q Consensus 917 ~~~~~~~LSgGqkqrl~lArall~~p--~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~~d~i~v 993 (1171)
+++...+|||||-||+-||+.|=.+= =+++|||||.||-+.....+.+.|+++.. |.|||+|-||.++++.||+|+-
T Consensus 1381 L~R~~~TLSGGE~QRirLa~~lgs~L~gvlYVLDEPSiGLHp~D~~~Li~~L~~Lrd~GNTvivVEHd~~~i~~AD~iid 1460 (1809)
T PRK00635 1381 LGQEQDTLSDGEHYRLHLAKKISSNLTDIIYLLEDPLSGLHPQDAPTLLQLIKELVTNNNTVIATDRSGSLAEHADHLIH 1460 (1809)
T ss_pred ccCCCCCCcchHHHHHHHHHHhcCCCceeEEEeCCCCcCCChhHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEE
Confidence 34667899999999999999998763 47899999999999999999999999874 8999999999999999999999
Q ss_pred E------eCcEEEEecChhHHhh
Q 001055 994 L------DSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 994 l------~~G~i~~~g~~~el~~ 1010 (1171)
| ..|+|+.+|++++++.
T Consensus 1461 iGPgAG~~GG~iv~~G~~~~l~~ 1483 (1809)
T PRK00635 1461 LGPGSGPQGGYLLSTSALKQSQP 1483 (1809)
T ss_pred eCCCccCCCCEEEecCCHHHHhh
Confidence 8 4699999999999975
No 475
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-36 Score=335.74 Aligned_cols=205 Identities=26% Similarity=0.380 Sum_probs=168.8
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCc
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 228 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 228 (1171)
+.++++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+..
T Consensus 6 ~~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 6 SIIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84 (269)
T ss_pred ceEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence 469999999999742 346999999999999999999999999999999999999999885432 1335
Q ss_pred EEEEecCCC--CCcccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHH
Q 001055 229 VAYVPQVSW--IFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 299 (1171)
Q Consensus 229 i~~v~Q~~~--l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~L 299 (1171)
++|++|++. ++..|+.+|+.++.. ... ++...+++..++.+..+ ....+||||||||++|
T Consensus 85 i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~l 153 (269)
T PRK13648 85 IGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERAD-----------YEPNALSGGQKQRVAI 153 (269)
T ss_pred eeEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhh-----------CCcccCCHHHHHHHHH
Confidence 999999985 357799999987632 111 22334455555443332 3446899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001055 300 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 300 AraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
||||+.+|+++||||||++||+.+++.+++.+.+... .|+|+|+|||+++++..||||++|++|++++.|+++++...
T Consensus 154 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 154 AGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999998776544 38999999999999888999999999999999999887654
No 476
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.7e-36 Score=328.67 Aligned_cols=190 Identities=26% Similarity=0.420 Sum_probs=158.0
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------ecC
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IRG 227 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------~~~ 227 (1171)
++++|++++|+. .+++|+|+||++++|++++|+||||||||||+++|+|+++|++|.+.. .+.
T Consensus 1 l~~~~l~~~~~~--~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPN--GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCC--CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 468999999963 257999999999999999999999999999999999999999886421 123
Q ss_pred cEEEEecCCCCCc-ccHHHHHhcCCC---CC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHH
Q 001055 228 TVAYVPQVSWIFN-ATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 299 (1171)
Q Consensus 228 ~i~~v~Q~~~l~~-~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~L 299 (1171)
.++|++|++.++. .|++||+.++.. .. .+++.+.++.+++.+..+.. ..+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRAL-----------PAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCC-----------hhhcCHHHHHHHHH
Confidence 5999999998875 799999987521 11 12344556666665544433 35899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEE
Q 001055 300 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMV 365 (1171)
Q Consensus 300 AraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i 365 (1171)
||||+.+|+++||||||++||+.+++.+.+.+.+...+|+|+|+|||+++++.. ||++++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999877665568999999999999975 799999999863
No 477
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4e-36 Score=323.64 Aligned_cols=193 Identities=25% Similarity=0.321 Sum_probs=162.5
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++||++.|++. .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .. .++.++|
T Consensus 3 l~~~~l~~~~~~~--~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~~~ 77 (207)
T PRK13539 3 LEGEDLACVRGGR--VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEACHY 77 (207)
T ss_pred EEEEeEEEEECCe--EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhcEE
Confidence 7899999999753 69999999999999999999999999999999999999999999999998752 22 7888999
Q ss_pred EcCCcccc-cccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 867 IPQSPVLF-SGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 867 v~Q~~~lf-~~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
++|++.++ ..|+++|+.+.. ...+.++.+.++..++.+ .......+||||||||++||||++++|
T Consensus 78 ~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~al~~~p 146 (207)
T PRK13539 78 LGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAP-----------LAHLPFGYLSAGQKRRVALARLLVSNR 146 (207)
T ss_pred ecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHH-----------HHcCChhhcCHHHHHHHHHHHHHhcCC
Confidence 99988766 569999986432 122334555555555543 233344679999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhhcCEEEEEeC
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLLDS 996 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~vl~~ 996 (1171)
++|||||||++||+.+.+.+++.|++.. +++|+|++||+++++.. |+++-++.
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 147 PIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 9999999999999999999999998864 47899999999999987 99987743
No 478
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.9e-36 Score=326.07 Aligned_cols=191 Identities=21% Similarity=0.378 Sum_probs=159.1
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-----------ecCcEEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVAY 231 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~~ 231 (1171)
|+++|++|.|++ +++|+|+||++++| +++|+||||||||||+++|+|+++|++|.+.. .+..++|
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 76 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGY 76 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEE
Confidence 478999999963 47999999999999 99999999999999999999999999886532 1346999
Q ss_pred EecCCCCCc-ccHHHHHhcCC---CCC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHh
Q 001055 232 VPQVSWIFN-ATVRDNILFGS---AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 303 (1171)
Q Consensus 232 v~Q~~~l~~-~Tv~eni~~g~---~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL 303 (1171)
++|++.+|. .||+||+.+.. ..+ .++..++++..++.+..+. ...+||||||||++|||||
T Consensus 77 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~la~al 145 (211)
T cd03264 77 LPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKK-----------KIGSLSGGMRRRVGIAQAL 145 (211)
T ss_pred ecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhC-----------chhhCCHHHHHHHHHHHHH
Confidence 999998875 69999997631 111 2334556666666554332 3358999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEec
Q 001055 304 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEG 369 (1171)
Q Consensus 304 ~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g 369 (1171)
+.+|+++||||||++||+.+++++.+.+.+... ++|+|+|||+++++.. +||+++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 146 VGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999998766543 5899999999999875 7999999999988754
No 479
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-36 Score=334.30 Aligned_cols=206 Identities=27% Similarity=0.389 Sum_probs=168.5
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCC-----CCCCccce-----------
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-----PVSDASAV----------- 224 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~-----~~~g~~~~----------- 224 (1171)
..|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|.+..
T Consensus 12 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~ 88 (260)
T PRK10744 12 SKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88 (260)
T ss_pred ceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccc
Confidence 46999999999963 479999999999999999999999999999999999986 46664321
Q ss_pred ---ecCcEEEEecCCCCCcccHHHHHhcCCC----CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHH
Q 001055 225 ---IRGTVAYVPQVSWIFNATVRDNILFGSA----FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 293 (1171)
Q Consensus 225 ---~~~~i~~v~Q~~~l~~~Tv~eni~~g~~----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGq 293 (1171)
.+..|+|++|++.++..||+||+.++.. .+. ++..++++..++...+. ..++....+|||||
T Consensus 89 ~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq 161 (260)
T PRK10744 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSGGQ 161 (260)
T ss_pred hHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCHHH
Confidence 1346999999998888999999987521 122 23444555555532221 12344567899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChh
Q 001055 294 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFE 372 (1171)
Q Consensus 294 rqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 372 (1171)
|||++|||||+.+|+++||||||++||+.+++.+.+.+.+.. +++|+|++||+++++.. +|++++|++|++++.|+.+
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999777654 47899999999999865 8999999999999999988
Q ss_pred HHhhc
Q 001055 373 DLSNN 377 (1171)
Q Consensus 373 ~l~~~ 377 (1171)
++.+.
T Consensus 241 ~~~~~ 245 (260)
T PRK10744 241 TIFTK 245 (260)
T ss_pred HHHhC
Confidence 87643
No 480
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-36 Score=338.17 Aligned_cols=202 Identities=25% Similarity=0.441 Sum_probs=168.2
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce--------------ecCc
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IRGT 228 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------~~~~ 228 (1171)
++++|++++|+. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+.. .+..
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 789999999962 346999999999999999999999999999999999999999885421 1345
Q ss_pred EEEEecCC--CCCcccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHH
Q 001055 229 VAYVPQVS--WIFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 299 (1171)
Q Consensus 229 i~~v~Q~~--~l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~L 299 (1171)
|+|++|++ .++..||.||+.++.. ... ++..++++.+++....+ ....+||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFEN-----------KPPHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhc-----------CChhhCCHHHHHHHHH
Confidence 99999997 4678899999987521 111 23444556666543332 2346899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 001055 300 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 300 AraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
||||+.+|+++||||||++||+.++.++.+.+.+...+|+|+|++||+++++. .||++++|++|++++.|+++++...
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999987766556899999999999987 5899999999999999999887654
No 481
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-36 Score=374.60 Aligned_cols=224 Identities=24% Similarity=0.347 Sum_probs=179.9
Q ss_pred cEEEEeeEEEeCCC--CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecC----------
Q 001055 786 SIKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA---------- 853 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~--~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~---------- 853 (1171)
.|+++|++++|+.. ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 49999999999632 236999999999999999999999999999999999999999999999997552
Q ss_pred CCChH---HHh-hheEEEcCCc--cccc-ccHHhhccCCC----CCCHHHHHHHHHHhcHHHHHHHccCCcc---hhhhc
Q 001055 854 KFGLM---DLR-KILGIIPQSP--VLFS-GTVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLD---AQVSE 919 (1171)
Q Consensus 854 ~~~~~---~~r-~~i~~v~Q~~--~lf~-~tv~~nl~~~~----~~~~~~i~~~l~~~~~~~~i~~lp~gl~---~~~~~ 919 (1171)
..+.. .+| +.||||+|+| .++. .||.+|+.+.. .....+.. ..+.+.++.+ |+. ...+.
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gL~~~~~~~~~ 164 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAM-----VEAKRMLDQV--RIPEAQTILSR 164 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHC--CCCChhhHHhC
Confidence 12222 233 4799999998 5665 49999986421 11221111 1223344443 442 34566
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-C-CcEEEEEecChhhhhh-cCEEEEEeC
Q 001055 920 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-K-SCTMLIIAHRLNTIID-CDRILLLDS 996 (1171)
Q Consensus 920 ~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~-~d~i~vl~~ 996 (1171)
...+|||||||||+|||||+.+|+||||||||++||+.+.+.+.+.|+++. + ++|||+||||++.+.. ||||++|++
T Consensus 165 ~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~ 244 (623)
T PRK10261 165 YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQ 244 (623)
T ss_pred CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeC
Confidence 778999999999999999999999999999999999999999999999875 3 7899999999999877 999999999
Q ss_pred cEEEEecChhHHhhcCCChH
Q 001055 997 GRVLEYDTPEELLSNEGSSF 1016 (1171)
Q Consensus 997 G~i~~~g~~~el~~~~~~~~ 1016 (1171)
|+|++.|+++++...+...|
T Consensus 245 G~i~~~g~~~~~~~~~~~~~ 264 (623)
T PRK10261 245 GEAVETGSVEQIFHAPQHPY 264 (623)
T ss_pred CeecccCCHHHhhcCCCChh
Confidence 99999999999976543333
No 482
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-36 Score=350.73 Aligned_cols=205 Identities=26% Similarity=0.413 Sum_probs=169.7
Q ss_pred cEEEEeeEEEcCCCCC---------------------CCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCC
Q 001055 162 AISIRNGYFSWDSKAE---------------------RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 220 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~---------------------~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g 220 (1171)
.|+++|+++.|....+ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 4788888888864321 1379999999999999999999999999999999999999988
Q ss_pred ccce----------------ecCcEEEEecCCCCC-cccHHHHHhcCCC---CC----HHHHHHHHHHcCchHHHhcCCC
Q 001055 221 ASAV----------------IRGTVAYVPQVSWIF-NATVRDNILFGSA---FE----PARYEKAIDVTSLQHDLDLLPG 276 (1171)
Q Consensus 221 ~~~~----------------~~~~i~~v~Q~~~l~-~~Tv~eni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~ 276 (1171)
.+.. .+..++|++|++.+| ..||+||+.++.. .. .++..+.++.+++.+..+..+
T Consensus 84 ~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~- 162 (400)
T PRK10070 84 QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP- 162 (400)
T ss_pred EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-
Confidence 6432 124699999999987 5799999987531 12 133445666677655444433
Q ss_pred CCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-c
Q 001055 277 GDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-V 354 (1171)
Q Consensus 277 ~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~ 354 (1171)
.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.+.+... .++|+|+||||++++.. |
T Consensus 163 ----------~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~ 232 (400)
T PRK10070 163 ----------DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIG 232 (400)
T ss_pred ----------ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhC
Confidence 58999999999999999999999999999999999999999998776543 48999999999999864 8
Q ss_pred CEEEEEeCCEEEEecChhHHhhc
Q 001055 355 DRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 355 d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
|+|++|++|++++.|+++++...
T Consensus 233 Dri~vL~~G~i~~~g~~~~l~~~ 255 (400)
T PRK10070 233 DRIAIMQNGEVVQVGTPDEILNN 255 (400)
T ss_pred CEEEEEECCEEEecCCHHHHHhC
Confidence 99999999999999999988654
No 483
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=5.4e-36 Score=367.30 Aligned_cols=220 Identities=25% Similarity=0.420 Sum_probs=177.8
Q ss_pred cEEEEeeEEEeCCC--CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----CCceEEECCEecCCCChH
Q 001055 786 SIKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-----ERGRILIDGFDIAKFGLM 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~--~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-----~~G~I~i~g~~i~~~~~~ 858 (1171)
.++++||+++|+.. ..++|+|+||+|.+||++||+||||||||||+++|+|+++| ++|+|.++|.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 38999999999631 23699999999999999999999999999999999999987 799999999999876644
Q ss_pred H---Hh-hheEEEcCCcc--ccc-ccHHhhccCC----CCCCHHHHHHHHHHhcHHHHHHHccCCcch---hhhcCCCCC
Q 001055 859 D---LR-KILGIIPQSPV--LFS-GTVRFNLDPF----SEHSDADLWEALERAHLKDAIRRNSLGLDA---QVSEAGENF 924 (1171)
Q Consensus 859 ~---~r-~~i~~v~Q~~~--lf~-~tv~~nl~~~----~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~---~~~~~~~~L 924 (1171)
. .| +.+||+||++. ++. .|+++|+.+. ......+.. ..+.+.++.+ |++. ..+....+|
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~~~L 157 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAAR-----GEILNCLDRV--GIRQAAKRLTDYPHQL 157 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHC--CCCChHHHHhhCCccc
Confidence 3 33 57999999985 443 4888887521 111111111 1123333332 3322 245667889
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeCcEEEE
Q 001055 925 SVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLE 1001 (1171)
Q Consensus 925 SgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~ 1001 (1171)
|||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|||+||||++.+.. ||||++|++|++++
T Consensus 158 SgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~ 237 (529)
T PRK15134 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVE 237 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999865 37899999999999877 99999999999999
Q ss_pred ecChhHHhhcC
Q 001055 1002 YDTPEELLSNE 1012 (1171)
Q Consensus 1002 ~g~~~el~~~~ 1012 (1171)
.|+++++....
T Consensus 238 ~g~~~~~~~~~ 248 (529)
T PRK15134 238 QNRAATLFSAP 248 (529)
T ss_pred eCCHHHHhhCC
Confidence 99999987543
No 484
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-36 Score=335.53 Aligned_cols=202 Identities=27% Similarity=0.400 Sum_probs=169.1
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCc
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 228 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 228 (1171)
+.++++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+.. .+..
T Consensus 10 ~~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 86 (265)
T PRK10575 10 TTFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARK 86 (265)
T ss_pred ceEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhh
Confidence 46999999999963 47999999999999999999999999999999999999999886532 1235
Q ss_pred EEEEecCCCCC-cccHHHHHhcCCC--------CC---HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHH
Q 001055 229 VAYVPQVSWIF-NATVRDNILFGSA--------FE---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 296 (1171)
Q Consensus 229 i~~v~Q~~~l~-~~Tv~eni~~g~~--------~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqR 296 (1171)
++|++|++.++ ..||.||+.++.. .. .+++...++.+++.+.++..+ .+||||||||
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qr 155 (265)
T PRK10575 87 VAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----------DSLSGGERQR 155 (265)
T ss_pred eEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----------ccCCHHHHHH
Confidence 99999998765 5699999987521 01 223455666777765444333 5899999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHH
Q 001055 297 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDL 374 (1171)
Q Consensus 297 v~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 374 (1171)
|+|||||+.+|+|+||||||++||+.+++.+.+.+..... .|+|+|++||+++++. .||++++|++|++++.|+.+++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 235 (265)
T PRK10575 156 AWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235 (265)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHh
Confidence 9999999999999999999999999999999987766544 3899999999999986 5899999999999999998887
Q ss_pred hh
Q 001055 375 SN 376 (1171)
Q Consensus 375 ~~ 376 (1171)
..
T Consensus 236 ~~ 237 (265)
T PRK10575 236 MR 237 (265)
T ss_pred cC
Confidence 54
No 485
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3.1e-36 Score=330.30 Aligned_cols=199 Identities=28% Similarity=0.492 Sum_probs=162.7
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecCcE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRGTV 229 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~~i 229 (1171)
|+++|+++.|+. +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|.+.. .+..+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 468999999963 47999999999999999999999999999999999999999886432 12359
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCC-C--C-HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhc
Q 001055 230 AYVPQVSWIFN-ATVRDNILFGSA-F--E-PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 304 (1171)
Q Consensus 230 ~~v~Q~~~l~~-~Tv~eni~~g~~-~--~-~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~ 304 (1171)
+|+||++.++. .|+.||+.++.. . . .+...++++..+. +. ...+....+||||||||++|||||+
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~---l~-------~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPV---LK-------EMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHh---HH-------HHhhCChhhCCHHHHHHHHHHHHHh
Confidence 99999998875 599999987531 1 1 1122233333221 00 1123455789999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHH
Q 001055 305 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDL 374 (1171)
Q Consensus 305 ~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l 374 (1171)
.+|+++||||||++||+.+++++.+.+.+... .++|+|++||+++++.. ||+++++++|++++.|+.+++
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999998776554 38999999999999985 899999999999999998876
No 486
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.3e-36 Score=326.85 Aligned_cols=189 Identities=33% Similarity=0.545 Sum_probs=155.2
Q ss_pred EEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEEE
Q 001055 164 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAY 231 (1171)
Q Consensus 164 ~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~ 231 (1171)
+++|++++|++. ++++|+++||++++|++++|+||||||||||+++|+|+++|++|.+.. .+..|+|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 368999999632 257999999999999999999999999999999999999999886532 1245999
Q ss_pred EecCCC--CCcccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHH
Q 001055 232 VPQVSW--IFNATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 302 (1171)
Q Consensus 232 v~Q~~~--l~~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAra 302 (1171)
++|++. ++..|++||+.++.. ... .+..+.++..++.+..+ ....+|||||||||+||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRD-----------RSPFTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhc-----------CCcccCCHHHHHHHHHHHH
Confidence 999984 467899999987521 121 23344555556554333 3346899999999999999
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCE
Q 001055 303 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGM 364 (1171)
Q Consensus 303 L~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~ 364 (1171)
|+.+|+++||||||++||+.+++++++.+.+...+|+|+|++||+++++.. ||+|++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999877665558999999999999986 89999999884
No 487
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=4.2e-36 Score=333.71 Aligned_cols=201 Identities=26% Similarity=0.393 Sum_probs=166.7
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------------
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------------ 224 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------------ 224 (1171)
|+++|+++.|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 478999999963 57999999999999999999999999999999999999999885421
Q ss_pred -------ecCcEEEEecCCCCC-cccHHHHHhcCC----CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCc
Q 001055 225 -------IRGTVAYVPQVSWIF-NATVRDNILFGS----AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVN 288 (1171)
Q Consensus 225 -------~~~~i~~v~Q~~~l~-~~Tv~eni~~g~----~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~ 288 (1171)
.+..++|++|++.++ ..||.||+.++. .... +++.+.++..++.+..+ ....+
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKAD-----------HMPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhh-----------cChhh
Confidence 134699999999887 589999998742 1111 23344555555544333 33468
Q ss_pred cChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhh-hcCEEEEEeCCEEE
Q 001055 289 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVK 366 (1171)
Q Consensus 289 LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~ 366 (1171)
||||||||++|||||+.+|+++||||||++||+.++.++++.+.+... .|.|+|+|||+++++. .+||+++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999998776544 3899999999999986 58999999999999
Q ss_pred EecChhHHhhc
Q 001055 367 EEGTFEDLSNN 377 (1171)
Q Consensus 367 ~~g~~~~l~~~ 377 (1171)
+.|+++++...
T Consensus 227 ~~g~~~~~~~~ 237 (252)
T TIGR03005 227 EQGKPDEIFRQ 237 (252)
T ss_pred EeCCHHHHhcC
Confidence 99998887543
No 488
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-36 Score=334.21 Aligned_cols=208 Identities=18% Similarity=0.298 Sum_probs=166.7
Q ss_pred CCCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCC-----CCCCccce---------
Q 001055 159 GLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-----PVSDASAV--------- 224 (1171)
Q Consensus 159 ~~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~-----~~~g~~~~--------- 224 (1171)
+.+.|+++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++ |++|.+..
T Consensus 18 ~~~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 94 (268)
T PRK14248 18 KEHILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSN 94 (268)
T ss_pred CCceEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccc
Confidence 3457999999999963 579999999999999999999999999999999999864 67775421
Q ss_pred -----ecCcEEEEecCCCCCcccHHHHHhcCCCC----CH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccCh
Q 001055 225 -----IRGTVAYVPQVSWIFNATVRDNILFGSAF----EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISG 291 (1171)
Q Consensus 225 -----~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~----~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSG 291 (1171)
.+..++|++|++.++..|++||+.++... .. +....+++..++...+. ...+....+|||
T Consensus 95 ~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSg 167 (268)
T PRK14248 95 INVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSLSG 167 (268)
T ss_pred ccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccCCH
Confidence 13469999999999878999999865211 11 12233344444421110 123455679999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecC
Q 001055 292 GQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGT 370 (1171)
Q Consensus 292 GqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~ 370 (1171)
|||||++|||||+.+|+++||||||++||+.+++++.+.+.+.. +++|+|++||+++++.. |||+++|++|++++.|+
T Consensus 168 Gq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 246 (268)
T PRK14248 168 GQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELK-EEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQ 246 (268)
T ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999998776654 46899999999998864 89999999999999999
Q ss_pred hhHHhhc
Q 001055 371 FEDLSNN 377 (1171)
Q Consensus 371 ~~~l~~~ 377 (1171)
.+++.++
T Consensus 247 ~~~~~~~ 253 (268)
T PRK14248 247 TEQIFTS 253 (268)
T ss_pred HHHHHhC
Confidence 8887643
No 489
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=2.1e-36 Score=344.21 Aligned_cols=188 Identities=26% Similarity=0.414 Sum_probs=158.6
Q ss_pred CCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-----------ecCcEEEEecCCCCC-cccHHH
Q 001055 178 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGTVAYVPQVSWIF-NATVRD 245 (1171)
Q Consensus 178 ~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~i~~v~Q~~~l~-~~Tv~e 245 (1171)
+++|+|+||+|++||++||+||||||||||+++|+|+++|++|.+.. .+..+||+||++.++ ..||+|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e 85 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRE 85 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHH
Confidence 57999999999999999999999999999999999999999986532 133599999999887 569999
Q ss_pred HHhcCCC---CC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCC
Q 001055 246 NILFGSA---FE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSA 318 (1171)
Q Consensus 246 ni~~g~~---~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~ 318 (1171)
|+.+... .. .++..++++..++.+..+ ....+|||||||||+|||||+.+|++|||||||+|
T Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 86 NLEMMGRLYGLPKDEAEERAEELLELFELGEAAD-----------RPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhC-----------CchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9986421 11 123455666666654333 23468999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001055 319 LDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 319 LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
||+.+++++++.+.+...+|+|+|++||+++++.. ||+|++|++|++++.|+++++..
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 99999999999877765568999999999999875 89999999999999999988754
No 490
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=5.6e-36 Score=326.60 Aligned_cols=197 Identities=21% Similarity=0.341 Sum_probs=166.3
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee--------cCcEEEEec
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--------RGTVAYVPQ 234 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~--------~~~i~~v~Q 234 (1171)
++++|++++|+. +++|+++||++++||+++|+|+||||||||+++|+|+++|++|.+... ...++|+||
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q 77 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIE 77 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcC
Confidence 468999999963 579999999999999999999999999999999999999999865321 135999999
Q ss_pred CCCCC-cccHHHHHhcCC---CCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEE
Q 001055 235 VSWIF-NATVRDNILFGS---AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 310 (1171)
Q Consensus 235 ~~~l~-~~Tv~eni~~g~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vl 310 (1171)
++.++ ..|++||+.++. ..+..+..+.++..++.+..+. ...+||||||||++||||++.+|+++
T Consensus 78 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~~rv~laral~~~p~ll 146 (223)
T TIGR03740 78 SPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKK-----------KAKQFSLGMKQRLGIAIALLNHPKLL 146 (223)
T ss_pred CCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhh-----------hHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99887 579999997532 2234455666677776554332 33589999999999999999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhH
Q 001055 311 IFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFED 373 (1171)
Q Consensus 311 lLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~ 373 (1171)
||||||++||+.+.+.+.+.+.+...+|+|+|++||+++++. .|||+++|++|++++.|++.+
T Consensus 147 llDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 147 ILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred EECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 999999999999999999987766556899999999999986 489999999999999988754
No 491
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.1e-36 Score=324.13 Aligned_cols=191 Identities=26% Similarity=0.448 Sum_probs=158.9
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEEEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 232 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v 232 (1171)
|+++|++++|+. +. .|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+..++|+
T Consensus 1 i~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 75 (211)
T cd03298 1 VRLDKIRFSYGE---QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSML 75 (211)
T ss_pred CEEEeEEEEeCC---Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEE
Confidence 478999999963 22 3999999999999999999999999999999999999886532 12359999
Q ss_pred ecCCCCCc-ccHHHHHhcCCCC-------CHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhc
Q 001055 233 PQVSWIFN-ATVRDNILFGSAF-------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 304 (1171)
Q Consensus 233 ~Q~~~l~~-~Tv~eni~~g~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~ 304 (1171)
+|++.++. .||+||+.++... ..+++.++++..++.+..+..+ .+||||||||++|||||+
T Consensus 76 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~al~ 144 (211)
T cd03298 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARVLV 144 (211)
T ss_pred ecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHHHh
Confidence 99999875 6999999875321 1234556667777765554433 489999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEec
Q 001055 305 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEG 369 (1171)
Q Consensus 305 ~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g 369 (1171)
.+|+++||||||++||+.++..+.+.+.+... .++|+|++||+++++.. ||++++|++|++++.|
T Consensus 145 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 145 RDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999998776543 48999999999999876 8999999999988653
No 492
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=3.9e-36 Score=327.63 Aligned_cols=192 Identities=22% Similarity=0.357 Sum_probs=158.8
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------ecC
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------IRG 227 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------~~~ 227 (1171)
|+++|+++.|+. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+.
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999952 357999999999999999999999999999999999999999886421 134
Q ss_pred cEEEEecCCCC-CcccHHHHHhcCC---CCCHH----HHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHH
Q 001055 228 TVAYVPQVSWI-FNATVRDNILFGS---AFEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 299 (1171)
Q Consensus 228 ~i~~v~Q~~~l-~~~Tv~eni~~g~---~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~L 299 (1171)
.++|++|++.+ +..|++||+.++. ..+.+ ++.+.++..++.+..+ ....+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAK-----------NFPIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhh-----------CCchhCCHHHHHHHHH
Confidence 69999999987 4789999998752 12221 2334455555544333 2346899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEE
Q 001055 300 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKE 367 (1171)
Q Consensus 300 AraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~ 367 (1171)
||||+.+|+++||||||++||+.+++.+++.+.....++.|+|++||+++++.. ||++++|++|+++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999998777655568999999999999976 79999999999764
No 493
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-36 Score=333.85 Aligned_cols=206 Identities=26% Similarity=0.397 Sum_probs=166.7
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCC--C---CCCccce-----------
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP--P---VSDASAV----------- 224 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~--~---~~g~~~~----------- 224 (1171)
+.|+++|+++.|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|.+..
T Consensus 11 ~~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~ 87 (259)
T PRK14274 11 EVYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87 (259)
T ss_pred ceEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccC
Confidence 46999999999963 479999999999999999999999999999999999987 3 4664321
Q ss_pred ---ecCcEEEEecCCCCCcccHHHHHhcCCC----CCHH----HHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHH
Q 001055 225 ---IRGTVAYVPQVSWIFNATVRDNILFGSA----FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ 293 (1171)
Q Consensus 225 ---~~~~i~~v~Q~~~l~~~Tv~eni~~g~~----~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGq 293 (1171)
.+..+||+||++.++..||+||+.++.. .... +..++++..++.+.+. ...+....+|||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq 160 (259)
T PRK14274 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQ 160 (259)
T ss_pred HHHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHH
Confidence 1345999999999887899999987531 1111 2233344444432221 12345567899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChh
Q 001055 294 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFE 372 (1171)
Q Consensus 294 rqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 372 (1171)
|||++|||||+.+|+++||||||++||+.++..+.+.+.+.. +++|+|+|||+++++.. |||+++|++|+++++|+++
T Consensus 161 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 239 (259)
T PRK14274 161 QQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK-EKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTN 239 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999998776654 47899999999999865 7999999999999999999
Q ss_pred HHhhc
Q 001055 373 DLSNN 377 (1171)
Q Consensus 373 ~l~~~ 377 (1171)
++..+
T Consensus 240 ~~~~~ 244 (259)
T PRK14274 240 KMFSN 244 (259)
T ss_pred HHhhC
Confidence 87644
No 494
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.6e-37 Score=306.20 Aligned_cols=212 Identities=28% Similarity=0.412 Sum_probs=185.7
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++||+++|+.+ .+++++|++|++|.+++|+||||||||||+.++.|++++++|+|.++|.++...+.+++.+.+++
T Consensus 2 I~i~nv~K~y~~~--~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSI 79 (252)
T COG4604 2 ITIENVSKSYGTK--VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSI 79 (252)
T ss_pred eeehhhhHhhCCE--EeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHH
Confidence 7899999999765 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCcccccc-cHHhhccCCC------CCCH---HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001055 867 IPQSPVLFSG-TVRFNLDPFS------EHSD---ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 936 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~------~~~~---~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 936 (1171)
+-|+..+-.. ||++-+.|+. ..+. .-+.++++-.++. ..-++.-.+||||||||.-+|.
T Consensus 80 LkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~-----------~l~dryLd~LSGGQrQRAfIAM 148 (252)
T COG4604 80 LKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLE-----------DLSDRYLDELSGGQRQRAFIAM 148 (252)
T ss_pred HHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhccc-----------chHHHhHHhcccchhhhhhhhe
Confidence 9999987654 9998665421 1222 2245555554443 3333444679999999999999
Q ss_pred HhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 937 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 937 all~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
.+.++.+.++||||.++||......+++.|+++.. ++|+++|-||..++.. +|+|+.|++|+++..|+|+|+++.
T Consensus 149 VlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 149 VLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred eeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence 99999999999999999999999999999998764 7999999999999988 999999999999999999999864
No 495
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-36 Score=331.77 Aligned_cols=195 Identities=27% Similarity=0.402 Sum_probs=161.7
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------ecCcEEEEecC
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------IRGTVAYVPQV 235 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------~~~~i~~v~Q~ 235 (1171)
++++|+++.|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+.. .+..++|++|+
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~ 78 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQN 78 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCC
Confidence 789999999963 57999999999999999999999999999999999999999987543 12358999999
Q ss_pred CCCC-cccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCC
Q 001055 236 SWIF-NATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 307 (1171)
Q Consensus 236 ~~l~-~~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~ 307 (1171)
+.++ ..||+||+.++.. ... +++.+.++..++.+..+ ....+||||||||++|||||+.+|
T Consensus 79 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~LSgGq~qrl~laral~~~p 147 (255)
T PRK11248 79 EGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEK-----------RYIWQLSGGQRQRVGIARALAANP 147 (255)
T ss_pred CccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhh-----------CChhhCCHHHHHHHHHHHHHhcCC
Confidence 9887 4799999986521 111 23445566666654333 234689999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHhhc-cCCCEEEEEcCCcchhhh-cCEEEEEe--CCEEEEecCh
Q 001055 308 DVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVH--EGMVKEEGTF 371 (1171)
Q Consensus 308 ~vllLDEpts~LD~~~~~~l~~~l~~~~-~~~~tvi~vtH~~~~l~~-~d~i~~l~--~G~i~~~g~~ 371 (1171)
++|||||||++||+.+++++.+.+.... ..|+|+|+|||+++++.. ||++++|+ +|+++++++.
T Consensus 148 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 148 QLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999999876653 348999999999999865 79999998 5999887654
No 496
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-35 Score=325.17 Aligned_cols=200 Identities=25% Similarity=0.416 Sum_probs=167.8
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEEEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 232 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v 232 (1171)
++++|++++|+. .+ .++||++++||+++|+||||||||||+++|+|+++|++|.+.. .+..++|+
T Consensus 2 l~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~ 76 (232)
T PRK10771 2 LKLTDITWLYHH---LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSML 76 (232)
T ss_pred eEEEEEEEEECC---cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEE
Confidence 789999999963 22 3899999999999999999999999999999999999886532 12359999
Q ss_pred ecCCCCCc-ccHHHHHhcCCCC----C---HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhc
Q 001055 233 PQVSWIFN-ATVRDNILFGSAF----E---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 304 (1171)
Q Consensus 233 ~Q~~~l~~-~Tv~eni~~g~~~----~---~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~ 304 (1171)
+|++.++. .|+.||+.++... . .+++.+.++..++....+..+ ..||||||||++||||++
T Consensus 77 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~ 145 (232)
T PRK10771 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARCLV 145 (232)
T ss_pred ecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHHHh
Confidence 99998875 6999999875211 1 234556677777766555444 489999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhcc
Q 001055 305 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNG 378 (1171)
Q Consensus 305 ~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 378 (1171)
.+|+++||||||++||+.+++.+.+.+..... .|+|+|++||+++++.. ||++++|++|++++.|+++++.+..
T Consensus 146 ~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~ 221 (232)
T PRK10771 146 REQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGK 221 (232)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCh
Confidence 99999999999999999999999998776544 38899999999999875 7999999999999999998887553
No 497
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-36 Score=333.44 Aligned_cols=206 Identities=25% Similarity=0.386 Sum_probs=167.6
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCC-----CCCccce-----------
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-----VSDASAV----------- 224 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~-----~~g~~~~----------- 224 (1171)
+.|+++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|.+..
T Consensus 11 ~~l~~~~l~~~~~---~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 87 (258)
T PRK14268 11 PQIKVENLNLWYG---EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87 (258)
T ss_pred eeEEEeeeEEEeC---CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccch
Confidence 4699999999996 35799999999999999999999999999999999999975 6774321
Q ss_pred ---ecCcEEEEecCCCCCcccHHHHHhcCCC---CCHH----HHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHH
Q 001055 225 ---IRGTVAYVPQVSWIFNATVRDNILFGSA---FEPA----RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 294 (1171)
Q Consensus 225 ---~~~~i~~v~Q~~~l~~~Tv~eni~~g~~---~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqr 294 (1171)
.+..++|++|++.++..|++||+.++.. .... +..++++.+++...+. ...+....+||||||
T Consensus 88 ~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~ 160 (258)
T PRK14268 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS-------DRLKSPALSLSGGQQ 160 (258)
T ss_pred HHHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh-------hhhcCChhhCCHHHH
Confidence 1345999999999888999999987521 1221 2334455554432111 123445678999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhH
Q 001055 295 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFED 373 (1171)
Q Consensus 295 qRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~ 373 (1171)
|||+|||||+.+|+++||||||++||+.++.++++.+.+.. +++|+|+|||+++++.. |||+++|++|++++.|++++
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~-~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 239 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK-KDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQ 239 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-hCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999776654 47999999999999865 89999999999999999988
Q ss_pred Hhhc
Q 001055 374 LSNN 377 (1171)
Q Consensus 374 l~~~ 377 (1171)
+..+
T Consensus 240 ~~~~ 243 (258)
T PRK14268 240 IFHN 243 (258)
T ss_pred HhcC
Confidence 7543
No 498
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=3.3e-36 Score=322.16 Aligned_cols=192 Identities=22% Similarity=0.308 Sum_probs=159.2
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++|++++|++. ++|+|+||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...++.++|
T Consensus 1 l~~~~l~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~ 77 (198)
T TIGR01189 1 LAARNLACSRGER--MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILY 77 (198)
T ss_pred CEEEEEEEEECCE--EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEE
Confidence 4789999999753 6999999999999999999999999999999999999999999999999987654 456788999
Q ss_pred EcCCccccc-ccHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 867 IPQSPVLFS-GTVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 867 v~Q~~~lf~-~tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
+||++.+|. .|+++|+.++.. ..+..+.++++..++.++ .+....+||||||||++||||++++|
T Consensus 78 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~la~al~~~p 146 (198)
T TIGR01189 78 LGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGF-----------EDLPAAQLSAGQQRRLALARLWLSRA 146 (198)
T ss_pred eccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHH-----------hcCChhhcCHHHHHHHHHHHHHhcCC
Confidence 999998886 599999864321 112234555555554433 34445689999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhhcCEEEE
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILL 993 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~v 993 (1171)
++|||||||++||+.+.+.+++.|+++. .+.|+|++||+...+ .|++++.
T Consensus 147 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~-~~~~~~~ 197 (198)
T TIGR01189 147 PLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL-VEARELR 197 (198)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc-cceEEee
Confidence 9999999999999999999999999864 478999999998443 2566654
No 499
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=3.9e-36 Score=347.25 Aligned_cols=189 Identities=29% Similarity=0.411 Sum_probs=159.4
Q ss_pred CCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee--------------------cCcEEEEecCCC
Q 001055 178 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--------------------RGTVAYVPQVSW 237 (1171)
Q Consensus 178 ~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~--------------------~~~i~~v~Q~~~ 237 (1171)
..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|.+..- +..|+|++|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 468999999999999999999999999999999999999998854221 136999999999
Q ss_pred CCc-ccHHHHHhcCCC---CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCE
Q 001055 238 IFN-ATVRDNILFGSA---FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 309 (1171)
Q Consensus 238 l~~-~Tv~eni~~g~~---~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~v 309 (1171)
+++ .||+||+.++.. .+. ++..++++..++.+..+.. ..+|||||||||+|||||+.+|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~-----------~~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKK-----------PGELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHHHHhcCCCE
Confidence 985 899999997632 111 2344566666665544433 358999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 001055 310 FIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 310 llLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
|||||||++||+.+++.+.+.+.+...+ ++|+|+||||++++. .+|||++|++|++++.|+++++..+
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~ 255 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLN 255 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhC
Confidence 9999999999999999999988776543 899999999999975 5899999999999999999998754
No 500
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.7e-36 Score=346.90 Aligned_cols=215 Identities=27% Similarity=0.395 Sum_probs=180.3
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhh-he
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK-IL 864 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~-~i 864 (1171)
.++++|++++|++- ++|+||||++.+||++||+|.||||||||+|+|+|.|+|++|+|.++|+++.-.++.+.++ .|
T Consensus 8 ll~~~~i~K~FggV--~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 8 LLELRGISKSFGGV--KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred eeeeecceEEcCCc--eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence 48999999999864 7999999999999999999999999999999999999999999999999999888887655 59
Q ss_pred EEEcCCcccccc-cHHhhccCCCCCCH--HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001055 865 GIIPQSPVLFSG-TVRFNLDPFSEHSD--ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 865 ~~v~Q~~~lf~~-tv~~nl~~~~~~~~--~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 941 (1171)
+.|+|+..|++. ||.|||-+..+... .-+.+..-...+.+.+.++....+ .+....+||.||||.|+|||||..+
T Consensus 86 ~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~--~~~~v~~LsiaqrQ~VeIArAl~~~ 163 (500)
T COG1129 86 ATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID--PDTLVGDLSIAQRQMVEIARALSFD 163 (500)
T ss_pred EEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC--hhhhhhhCCHHHHHHHHHHHHHhcC
Confidence 999999999965 99999965433221 111111111223445555432211 4555678999999999999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecC
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 1004 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~ 1004 (1171)
++||||||||++|+....+.+.+.++++. +|.++|+|||+++++.. ||||.||.||+.+..++
T Consensus 164 arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 164 ARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 99999999999999999999999999987 58999999999999988 99999999999998766
Done!