Query 001055
Match_columns 1171
No_of_seqs 550 out of 5065
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 08:43:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001055.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001055hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 8E-140 3E-144 1396.7 104.6 1010 4-1023 252-1316(1321)
2 3g5u_A MCG1178, multidrug resi 100.0 2E-121 6E-126 1217.8 86.7 1004 6-1024 226-1271(1284)
3 4f4c_A Multidrug resistance pr 100.0 1.3E-70 4.3E-75 731.9 65.2 512 504-1024 138-654 (1321)
4 3qf4_A ABC transporter, ATP-bi 100.0 8.3E-70 2.8E-74 670.9 62.2 547 466-1022 25-577 (587)
5 3qf4_B Uncharacterized ABC tra 100.0 1.1E-69 3.6E-74 671.9 57.9 547 464-1022 37-589 (598)
6 3b5x_A Lipid A export ATP-bind 100.0 7E-68 2.4E-72 654.7 71.7 544 467-1022 28-578 (582)
7 3b60_A Lipid A export ATP-bind 100.0 6.1E-68 2.1E-72 655.3 70.7 546 466-1022 27-578 (582)
8 4a82_A Cystic fibrosis transme 100.0 9.4E-69 3.2E-73 661.4 60.6 544 468-1021 18-574 (578)
9 2yl4_A ATP-binding cassette SU 100.0 1.1E-67 3.9E-72 654.5 68.2 547 467-1022 22-582 (595)
10 3g5u_A MCG1178, multidrug resi 100.0 1.5E-66 5.1E-71 691.1 52.5 511 503-1023 109-625 (1284)
11 2iw3_A Elongation factor 3A; a 100.0 4.9E-64 1.7E-68 633.2 46.2 194 162-375 435-634 (986)
12 3bk7_A ABC transporter ATP-bin 100.0 2.6E-65 8.7E-70 627.7 33.1 201 786-1010 357-563 (607)
13 1yqt_A RNAse L inhibitor; ATP- 100.0 2.2E-65 7.7E-70 622.7 30.0 201 786-1010 287-493 (538)
14 3ozx_A RNAse L inhibitor; ATP 100.0 2.7E-62 9.2E-67 593.6 27.7 198 786-1009 269-476 (538)
15 3ux8_A Excinuclease ABC, A sub 100.0 2.9E-62 1E-66 614.5 28.9 197 177-375 30-297 (670)
16 3j16_B RLI1P; ribosome recycli 100.0 2.8E-61 9.6E-66 590.4 32.3 197 790-1011 350-560 (608)
17 4a82_A Cystic fibrosis transme 100.0 1.5E-57 5.2E-62 561.5 46.7 381 4-386 177-574 (578)
18 3qf4_A ABC transporter, ATP-bi 100.0 3.9E-57 1.3E-61 557.9 49.6 382 4-387 179-577 (587)
19 3b5x_A Lipid A export ATP-bind 100.0 4.1E-56 1.4E-60 549.6 50.4 380 6-387 183-578 (582)
20 3qf4_B Uncharacterized ABC tra 100.0 3.8E-57 1.3E-61 559.6 39.1 382 4-388 193-590 (598)
21 3b60_A Lipid A export ATP-bind 100.0 3.6E-56 1.2E-60 550.1 47.2 381 5-387 182-578 (582)
22 2yl4_A ATP-binding cassette SU 100.0 1.6E-55 5.4E-60 545.8 46.9 380 6-386 180-581 (595)
23 3nh6_A ATP-binding cassette SU 100.0 1.2E-55 4E-60 497.5 25.9 270 749-1023 19-289 (306)
24 2ff7_A Alpha-hemolysin translo 100.0 6.4E-50 2.2E-54 440.0 30.6 237 785-1021 6-243 (247)
25 3nh6_A ATP-binding cassette SU 100.0 1.5E-49 5E-54 447.8 24.6 260 126-388 15-289 (306)
26 2vf7_A UVRA2, excinuclease ABC 100.0 9.3E-48 3.2E-52 482.1 38.5 212 785-1013 501-830 (842)
27 2ixe_A Antigen peptide transpo 100.0 3E-48 1E-52 432.4 28.3 236 785-1021 15-255 (271)
28 2ghi_A Transport protein; mult 100.0 5E-48 1.7E-52 428.2 28.2 233 786-1020 17-251 (260)
29 3gd7_A Fusion complex of cysti 100.0 2.2E-48 7.5E-53 451.6 26.1 238 779-1017 12-249 (390)
30 1mv5_A LMRA, multidrug resista 100.0 5.4E-49 1.9E-53 432.3 18.9 224 787-1011 2-227 (243)
31 3pih_A Uvrabc system protein A 100.0 3.4E-46 1.1E-50 471.6 32.2 211 786-1013 589-905 (916)
32 2pze_A Cystic fibrosis transme 100.0 6.4E-46 2.2E-50 404.0 25.1 214 785-1011 5-219 (229)
33 3tui_C Methionine import ATP-b 100.0 5.3E-46 1.8E-50 425.2 24.6 227 785-1018 23-261 (366)
34 2r6f_A Excinuclease ABC subuni 100.0 1.6E-45 5.6E-50 460.4 30.7 211 786-1013 629-945 (972)
35 2cbz_A Multidrug resistance-as 100.0 6.9E-46 2.4E-50 405.6 23.7 220 787-1020 4-226 (237)
36 2ygr_A Uvrabc system protein A 100.0 8.3E-45 2.8E-49 455.9 34.0 211 786-1013 647-963 (993)
37 3gfo_A Cobalt import ATP-bindi 100.0 8.1E-46 2.8E-50 412.3 22.0 218 786-1011 7-234 (275)
38 1ji0_A ABC transporter; ATP bi 100.0 4.1E-45 1.4E-49 400.5 24.5 217 786-1010 6-228 (240)
39 3tif_A Uncharacterized ABC tra 100.0 3.1E-45 1.1E-49 400.0 22.5 216 787-1009 2-233 (235)
40 2olj_A Amino acid ABC transpor 100.0 1.1E-44 3.6E-49 401.0 26.5 219 786-1013 24-251 (263)
41 3fvq_A Fe(3+) IONS import ATP- 100.0 5.9E-45 2E-49 416.7 23.4 219 786-1017 4-235 (359)
42 4g1u_C Hemin import ATP-bindin 100.0 8.5E-45 2.9E-49 403.1 24.0 212 786-1010 11-237 (266)
43 2pze_A Cystic fibrosis transme 100.0 2.4E-44 8.1E-49 391.7 26.3 216 162-379 6-221 (229)
44 2ff7_A Alpha-hemolysin translo 100.0 5.1E-44 1.7E-48 393.1 27.2 223 162-386 7-243 (247)
45 1b0u_A Histidine permease; ABC 100.0 1.7E-44 5.9E-49 400.3 23.2 219 786-1013 6-245 (262)
46 3rlf_A Maltose/maltodextrin im 100.0 2E-44 7E-49 414.9 24.4 220 787-1017 4-230 (381)
47 2cbz_A Multidrug resistance-as 100.0 4.7E-44 1.6E-48 391.1 25.4 223 162-386 3-227 (237)
48 1vpl_A ABC transporter, ATP-bi 100.0 3.7E-44 1.3E-48 395.5 24.6 217 785-1011 14-236 (256)
49 1g6h_A High-affinity branched- 100.0 2.5E-44 8.5E-49 398.4 22.8 214 786-1008 7-240 (257)
50 2yyz_A Sugar ABC transporter, 100.0 9.3E-44 3.2E-48 408.4 26.6 215 787-1016 4-229 (359)
51 2ghi_A Transport protein; mult 100.0 2E-43 6.7E-48 391.4 27.5 223 162-386 17-252 (260)
52 2pcj_A ABC transporter, lipopr 100.0 3.8E-44 1.3E-48 388.7 20.6 210 786-1004 4-222 (224)
53 1z47_A CYSA, putative ABC-tran 100.0 8.2E-44 2.8E-48 407.7 24.3 221 785-1016 13-241 (355)
54 1mv5_A LMRA, multidrug resista 100.0 4.4E-44 1.5E-48 393.3 21.1 220 163-385 2-235 (243)
55 2yz2_A Putative ABC transporte 100.0 9.9E-44 3.4E-48 395.4 23.3 214 787-1012 3-229 (266)
56 2it1_A 362AA long hypothetical 100.0 1.1E-43 3.9E-48 408.1 24.0 219 787-1016 4-229 (362)
57 1v43_A Sugar-binding transport 100.0 2.4E-43 8.1E-48 406.9 26.6 220 786-1016 11-237 (372)
58 2ixe_A Antigen peptide transpo 100.0 3.3E-43 1.1E-47 391.7 26.4 226 161-386 15-255 (271)
59 2onk_A Molybdate/tungstate ABC 100.0 1.6E-43 5.3E-48 387.0 22.6 212 787-1012 2-218 (240)
60 2ihy_A ABC transporter, ATP-bi 100.0 6.5E-44 2.2E-48 398.5 19.9 215 786-1010 21-252 (279)
61 1oxx_K GLCV, glucose, ABC tran 100.0 1.2E-43 4.2E-48 407.8 22.6 221 787-1016 4-236 (353)
62 3d31_A Sulfate/molybdate ABC t 100.0 2.9E-43 9.8E-48 403.1 25.3 214 787-1016 2-223 (348)
63 1g29_1 MALK, maltose transport 100.0 1.4E-43 4.9E-48 409.7 20.7 219 787-1016 4-235 (372)
64 2qi9_C Vitamin B12 import ATP- 100.0 5.5E-43 1.9E-47 384.5 23.9 207 786-1010 4-222 (249)
65 2d2e_A SUFC protein; ABC-ATPas 100.0 5.6E-43 1.9E-47 386.0 19.5 212 787-1007 4-230 (250)
66 2bbs_A Cystic fibrosis transme 100.0 8.8E-43 3E-47 390.8 20.3 208 785-1010 39-247 (290)
67 2pjz_A Hypothetical protein ST 100.0 1.7E-42 5.9E-47 383.3 20.6 206 787-1011 2-216 (263)
68 2zu0_C Probable ATP-dependent 100.0 6.6E-42 2.3E-46 380.6 24.6 215 786-1009 20-253 (267)
69 3gd7_A Fusion complex of cysti 100.0 5E-42 1.7E-46 398.3 24.1 214 161-377 18-243 (390)
70 3gfo_A Cobalt import ATP-bindi 100.0 3.2E-42 1.1E-46 383.3 20.5 208 161-381 6-238 (275)
71 2bbs_A Cystic fibrosis transme 100.0 1.2E-41 4.1E-46 381.6 23.7 231 138-376 17-247 (290)
72 2nq2_C Hypothetical ABC transp 100.0 7E-42 2.4E-46 377.1 20.3 199 786-1010 4-217 (253)
73 3tui_C Methionine import ATP-b 100.0 5.3E-42 1.8E-46 392.2 19.1 208 159-377 21-254 (366)
74 3tif_A Uncharacterized ABC tra 100.0 4.5E-42 1.5E-46 375.0 16.9 202 163-374 2-232 (235)
75 3fvq_A Fe(3+) IONS import ATP- 100.0 3.6E-41 1.2E-45 385.4 22.5 203 162-378 4-230 (359)
76 2olj_A Amino acid ABC transpor 100.0 7.2E-41 2.5E-45 370.4 21.0 202 162-377 24-249 (263)
77 1ji0_A ABC transporter; ATP bi 100.0 1.1E-40 3.7E-45 365.5 21.6 203 161-377 5-229 (240)
78 1b0u_A Histidine permease; ABC 100.0 9.4E-41 3.2E-45 370.3 21.2 202 162-377 6-243 (262)
79 3rlf_A Maltose/maltodextrin im 100.0 4.7E-41 1.6E-45 386.9 19.2 202 162-377 3-224 (381)
80 2pcj_A ABC transporter, lipopr 100.0 3.1E-41 1.1E-45 365.8 16.5 195 162-370 4-222 (224)
81 2yz2_A Putative ABC transporte 100.0 2.6E-40 8.8E-45 367.9 23.2 205 162-377 2-228 (266)
82 2nq2_C Hypothetical ABC transp 100.0 1.5E-40 5E-45 366.6 21.0 201 162-377 4-218 (253)
83 1g6h_A High-affinity branched- 100.0 9.2E-41 3.1E-45 369.8 19.4 199 161-373 6-239 (257)
84 1vpl_A ABC transporter, ATP-bi 100.0 1.6E-40 5.4E-45 366.4 21.1 203 160-376 13-235 (256)
85 4g1u_C Hemin import ATP-bindin 100.0 1.2E-40 4.3E-45 369.7 20.3 203 161-377 10-238 (266)
86 1sgw_A Putative ABC transporte 100.0 3.7E-41 1.3E-45 361.2 15.0 193 786-999 10-210 (214)
87 1z47_A CYSA, putative ABC-tran 100.0 1.7E-40 5.8E-45 380.3 20.4 207 159-378 11-237 (355)
88 2yyz_A Sugar ABC transporter, 100.0 3.7E-40 1.3E-44 378.5 22.2 203 162-378 3-225 (359)
89 1oxx_K GLCV, glucose, ABC tran 100.0 5.6E-40 1.9E-44 377.5 20.8 203 162-378 3-232 (353)
90 2it1_A 362AA long hypothetical 100.0 4.4E-40 1.5E-44 378.3 19.4 202 162-377 3-224 (362)
91 1v43_A Sugar-binding transport 100.0 7.7E-40 2.6E-44 377.6 21.5 202 162-377 11-232 (372)
92 2onk_A Molybdate/tungstate ABC 100.0 6E-40 2.1E-44 358.6 19.1 198 163-377 2-217 (240)
93 3d31_A Sulfate/molybdate ABC t 100.0 6.4E-40 2.2E-44 375.4 19.9 201 163-378 2-219 (348)
94 2ihy_A ABC transporter, ATP-bi 100.0 3.9E-40 1.3E-44 368.0 17.1 203 161-377 20-253 (279)
95 1g29_1 MALK, maltose transport 100.0 1.4E-39 4.8E-44 376.3 19.8 202 162-377 3-230 (372)
96 2qi9_C Vitamin B12 import ATP- 100.0 5.4E-39 1.8E-43 352.8 21.2 196 162-376 4-222 (249)
97 2d2e_A SUFC protein; ABC-ATPas 100.0 1.7E-38 5.7E-43 350.2 19.8 197 162-372 3-229 (250)
98 2pjz_A Hypothetical protein ST 100.0 1.4E-38 4.6E-43 352.1 19.1 197 163-376 2-215 (263)
99 2zu0_C Probable ATP-dependent 100.0 1.7E-38 5.8E-43 353.2 19.0 203 160-375 18-253 (267)
100 1sgw_A Putative ABC transporte 100.0 3.2E-38 1.1E-42 338.4 12.2 187 162-365 10-210 (214)
101 1tf7_A KAIC; homohexamer, hexa 100.0 2.3E-36 7.8E-41 369.0 -3.0 170 787-998 258-444 (525)
102 3bk7_A ABC transporter ATP-bin 100.0 6.3E-33 2.2E-37 340.6 18.4 201 160-376 355-563 (607)
103 1yqt_A RNAse L inhibitor; ATP- 100.0 5E-33 1.7E-37 338.3 17.0 201 160-376 285-493 (538)
104 3ozx_A RNAse L inhibitor; ATP 100.0 1.5E-32 5.2E-37 333.0 16.8 200 160-374 267-475 (538)
105 2iw3_A Elongation factor 3A; a 100.0 3.6E-31 1.2E-35 334.4 23.8 196 786-1010 435-635 (986)
106 3j16_B RLI1P; ribosome recycli 100.0 8.2E-32 2.8E-36 329.9 15.3 198 166-377 350-560 (608)
107 3ux8_A Excinuclease ABC, A sub 100.0 7.9E-32 2.7E-36 338.3 14.9 203 802-1013 32-301 (670)
108 2v9p_A Replication protein E1; 100.0 5.3E-33 1.8E-37 311.8 -16.6 205 737-1008 57-264 (305)
109 2v9p_A Replication protein E1; 100.0 4.3E-33 1.5E-37 312.5 -18.8 233 98-385 38-272 (305)
110 4aby_A DNA repair protein RECN 99.9 6.5E-28 2.2E-32 286.5 17.2 200 802-1002 49-380 (415)
111 2npi_A Protein CLP1; CLP1-PCF1 99.9 6.1E-31 2.1E-35 312.7 -11.3 189 786-1009 118-337 (460)
112 3pih_A Uvrabc system protein A 99.9 4.3E-27 1.5E-31 297.6 21.7 132 241-382 767-908 (916)
113 2vf7_A UVRA2, excinuclease ABC 99.9 2E-26 6.8E-31 289.3 17.2 96 282-377 724-828 (842)
114 2r6f_A Excinuclease ABC subuni 99.9 3.2E-26 1.1E-30 286.9 18.9 98 282-379 839-945 (972)
115 2ygr_A Uvrabc system protein A 99.9 5E-26 1.7E-30 286.2 17.7 98 282-379 857-963 (993)
116 2npi_A Protein CLP1; CLP1-PCF1 99.9 1.2E-28 4.1E-33 293.1 -14.5 188 161-376 117-338 (460)
117 4aby_A DNA repair protein RECN 99.9 1.8E-24 6.1E-29 256.9 18.4 79 289-368 296-380 (415)
118 3b85_A Phosphate starvation-in 99.9 8.3E-28 2.8E-32 256.8 -9.6 156 802-997 14-170 (208)
119 1e69_A Chromosome segregation 99.9 1.1E-24 3.7E-29 249.5 14.3 202 805-1007 16-310 (322)
120 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 2.9E-23 1E-27 241.1 17.3 83 919-1001 275-364 (365)
121 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 1.6E-23 5.4E-28 243.4 14.5 84 284-367 275-364 (365)
122 4gp7_A Metallophosphoesterase; 99.9 7.1E-25 2.4E-29 227.5 1.2 150 183-357 1-168 (171)
123 4gp7_A Metallophosphoesterase; 99.9 2E-24 6.8E-29 224.2 3.5 149 806-991 1-168 (171)
124 1ye8_A Protein THEP1, hypothet 99.9 3.5E-24 1.2E-28 223.4 3.8 148 816-1002 2-160 (178)
125 3b85_A Phosphate starvation-in 99.9 5E-25 1.7E-29 235.2 -3.1 146 178-364 13-171 (208)
126 1e69_A Chromosome segregation 99.9 1.3E-21 4.3E-26 224.1 13.5 80 285-365 216-301 (322)
127 1tq4_A IIGP1, interferon-induc 99.9 5.3E-24 1.8E-28 248.6 -7.2 167 802-992 37-248 (413)
128 2pt7_A CAG-ALFA; ATPase, prote 99.9 9.7E-24 3.3E-28 241.5 -5.3 140 789-998 151-291 (330)
129 1z6g_A Guanylate kinase; struc 99.9 1.7E-24 5.8E-29 233.8 -10.9 169 802-996 11-193 (218)
130 2dpy_A FLII, flagellum-specifi 99.8 1.3E-23 4.4E-28 248.5 -6.9 195 785-1010 130-344 (438)
131 1ye8_A Protein THEP1, hypothet 99.8 8.9E-22 3.1E-26 205.1 4.5 133 193-356 2-152 (178)
132 1znw_A Guanylate kinase, GMP k 99.8 1.6E-22 5.4E-27 216.6 -4.9 167 801-995 9-202 (207)
133 1tq4_A IIGP1, interferon-induc 99.8 1.3E-22 4.5E-27 236.9 -7.2 165 178-357 36-247 (413)
134 3sop_A Neuronal-specific septi 99.8 7.7E-22 2.6E-26 219.3 -1.0 149 816-985 4-153 (270)
135 2o5v_A DNA replication and rep 99.8 7.2E-20 2.5E-24 210.6 15.0 81 923-1008 265-354 (359)
136 3b9q_A Chloroplast SRP recepto 99.8 2E-21 6.9E-26 219.2 0.7 174 804-999 90-284 (302)
137 3aez_A Pantothenate kinase; tr 99.8 5.2E-22 1.8E-26 225.0 -9.6 178 784-997 41-245 (312)
138 2og2_A Putative signal recogni 99.8 1.8E-20 6E-25 215.2 1.7 173 805-999 148-341 (359)
139 2obl_A ESCN; ATPase, hydrolase 99.8 1.3E-20 4.6E-25 216.3 0.2 197 785-1011 44-256 (347)
140 3aez_A Pantothenate kinase; tr 99.8 6.1E-22 2.1E-26 224.5 -11.0 138 162-321 43-209 (312)
141 2o8b_B DNA mismatch repair pro 99.8 3.6E-19 1.2E-23 229.5 9.5 172 785-1007 749-939 (1022)
142 3qkt_A DNA double-strand break 99.8 7.5E-18 2.6E-22 194.1 18.9 81 919-999 244-333 (339)
143 2dpy_A FLII, flagellum-specifi 99.8 1.1E-20 3.8E-25 223.4 -5.3 183 161-375 130-343 (438)
144 4ad8_A DNA repair protein RECN 99.8 1E-18 3.6E-23 212.6 11.8 77 921-997 394-473 (517)
145 1z6g_A Guanylate kinase; struc 99.8 4.3E-21 1.5E-25 207.1 -8.4 155 179-362 11-193 (218)
146 3qkt_A DNA double-strand break 99.8 3.6E-18 1.2E-22 196.7 14.8 77 285-361 245-327 (339)
147 1tf7_A KAIC; homohexamer, hexa 99.8 2.7E-20 9.2E-25 227.1 -3.5 167 801-997 25-210 (525)
148 2i3b_A HCR-ntpase, human cance 99.8 1.1E-20 3.7E-25 198.6 -6.2 158 814-1002 1-168 (189)
149 1znw_A Guanylate kinase, GMP k 99.7 8.1E-21 2.8E-25 203.3 -8.3 166 178-361 9-202 (207)
150 1cr0_A DNA primase/helicase; R 99.7 1.9E-18 6.4E-23 195.4 7.9 181 802-999 23-237 (296)
151 2eyu_A Twitching motility prot 99.7 4.2E-19 1.4E-23 196.3 2.3 141 787-996 6-147 (261)
152 2pt7_A CAG-ALFA; ATPase, prote 99.7 1.9E-19 6.7E-24 205.8 -0.6 132 180-364 160-291 (330)
153 2o8b_B DNA mismatch repair pro 99.7 3.2E-18 1.1E-22 220.8 10.1 167 160-366 748-930 (1022)
154 3b9q_A Chloroplast SRP recepto 99.7 1.3E-19 4.4E-24 204.4 -3.4 161 182-364 91-283 (302)
155 2o5v_A DNA replication and rep 99.7 1.3E-17 4.6E-22 191.7 12.2 81 288-374 265-354 (359)
156 3sop_A Neuronal-specific septi 99.7 1.5E-19 5.2E-24 200.9 -4.2 136 193-351 4-153 (270)
157 2obl_A ESCN; ATPase, hydrolase 99.7 6.9E-19 2.4E-23 202.0 0.1 184 161-374 44-253 (347)
158 2ehv_A Hypothetical protein PH 99.7 2.2E-18 7.5E-23 189.4 3.1 180 787-996 7-207 (251)
159 3thx_A DNA mismatch repair pro 99.7 2.3E-17 7.9E-22 210.1 11.4 166 786-1009 631-812 (934)
160 2jeo_A Uridine-cytidine kinase 99.7 4.4E-19 1.5E-23 194.9 -4.0 164 801-1009 12-186 (245)
161 2f1r_A Molybdopterin-guanine d 99.7 2.4E-19 8.3E-24 185.0 -6.3 110 815-944 3-124 (171)
162 3thx_A DNA mismatch repair pro 99.7 1.2E-16 4.1E-21 203.5 16.6 168 161-374 630-811 (934)
163 2og2_A Putative signal recogni 99.7 1E-18 3.5E-23 200.6 -2.4 161 182-364 148-340 (359)
164 1ewq_A DNA mismatch repair pro 99.7 1.6E-17 5.5E-22 208.1 6.4 157 785-1002 549-716 (765)
165 1ewq_A DNA mismatch repair pro 99.7 3.5E-17 1.2E-21 205.0 8.7 147 161-354 549-704 (765)
166 1w1w_A Structural maintenance 99.7 8.1E-17 2.8E-21 191.7 10.8 73 923-995 333-410 (430)
167 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 1.8E-16 6.2E-21 159.3 11.4 81 284-364 53-141 (148)
168 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 2E-16 6.7E-21 159.0 10.8 82 918-999 52-142 (148)
169 4a74_A DNA repair and recombin 99.7 3.1E-17 1.1E-21 177.7 5.1 147 810-997 21-200 (231)
170 3szr_A Interferon-induced GTP- 99.7 1.7E-18 5.8E-23 213.8 -6.4 190 786-1009 10-236 (608)
171 2eyu_A Twitching motility prot 99.6 2.4E-17 8.1E-22 182.3 1.4 132 179-362 15-147 (261)
172 1pzn_A RAD51, DNA repair and r 99.6 1.7E-17 5.7E-22 191.4 0.1 167 802-1009 118-314 (349)
173 2ewv_A Twitching motility prot 99.6 4.9E-19 1.7E-23 205.9 -13.8 175 802-984 126-353 (372)
174 3jvv_A Twitching mobility prot 99.6 7.4E-17 2.5E-21 185.7 4.3 147 790-997 92-246 (356)
175 1pui_A ENGB, probable GTP-bind 99.6 2.4E-17 8.1E-22 176.1 -0.6 169 787-971 4-198 (210)
176 2qnr_A Septin-2, protein NEDD5 99.6 2.5E-17 8.4E-22 186.3 -1.0 163 790-984 2-169 (301)
177 1lw7_A Transcriptional regulat 99.6 6.7E-19 2.3E-23 205.1 -14.2 177 803-1010 157-355 (365)
178 2i3b_A HCR-ntpase, human cance 99.6 1.3E-17 4.3E-22 175.2 -3.1 147 191-367 1-167 (189)
179 2jeo_A Uridine-cytidine kinase 99.6 8.5E-17 2.9E-21 176.7 2.0 148 176-351 10-168 (245)
180 3thx_B DNA mismatch repair pro 99.6 3.7E-16 1.3E-20 198.4 8.0 157 162-356 640-804 (918)
181 1cr0_A DNA primase/helicase; R 99.6 8.6E-16 3E-20 173.5 10.2 170 178-365 22-237 (296)
182 2w0m_A SSO2452; RECA, SSPF, un 99.6 2.5E-16 8.5E-21 170.7 5.0 164 802-997 10-192 (235)
183 1lvg_A Guanylate kinase, GMP k 99.6 1.1E-18 3.9E-23 185.2 -13.5 158 812-996 2-173 (198)
184 3thx_B DNA mismatch repair pro 99.6 6E-16 2.1E-20 196.5 7.9 167 786-1000 640-815 (918)
185 2qag_C Septin-7; cell cycle, c 99.6 1.4E-16 4.8E-21 186.7 1.2 166 785-985 10-180 (418)
186 1rj9_A FTSY, signal recognitio 99.6 2.1E-16 7.3E-21 178.2 1.9 149 813-984 101-260 (304)
187 3asz_A Uridine kinase; cytidin 99.6 1.6E-17 5.5E-22 177.9 -7.8 139 811-982 3-161 (211)
188 3asz_A Uridine kinase; cytidin 99.6 1.8E-17 6.1E-22 177.6 -8.8 140 188-348 3-161 (211)
189 2qnr_A Septin-2, protein NEDD5 99.6 1.1E-16 3.9E-21 180.8 -3.1 155 166-349 2-168 (301)
190 4a74_A DNA repair and recombin 99.6 8.3E-16 2.8E-20 166.5 3.3 140 187-363 21-200 (231)
191 2ehv_A Hypothetical protein PH 99.6 6.3E-16 2.2E-20 169.7 2.2 169 163-362 7-207 (251)
192 1s96_A Guanylate kinase, GMP k 99.5 9.9E-16 3.4E-20 164.7 2.3 143 809-1010 11-160 (219)
193 1wb9_A DNA mismatch repair pro 99.5 2E-15 6.7E-20 190.4 5.3 167 162-368 577-750 (800)
194 3jvv_A Twitching mobility prot 99.5 1.3E-15 4.5E-20 175.3 2.7 148 166-363 92-246 (356)
195 1wb9_A DNA mismatch repair pro 99.5 1.9E-15 6.5E-20 190.5 4.4 152 801-1003 595-751 (800)
196 3kta_B Chromosome segregation 99.5 2.1E-14 7.1E-19 148.1 10.4 79 921-999 62-146 (173)
197 2gza_A Type IV secretion syste 99.5 2.6E-16 9E-21 182.3 -4.5 153 788-998 137-303 (361)
198 2qag_B Septin-6, protein NEDD5 99.5 5.2E-15 1.8E-19 172.4 5.2 179 787-981 17-218 (427)
199 2w0m_A SSO2452; RECA, SSPF, un 99.5 3.1E-14 1.1E-18 154.1 9.9 169 178-364 9-193 (235)
200 2qag_C Septin-7; cell cycle, c 99.5 2.8E-15 9.4E-20 175.8 1.5 156 162-351 11-180 (418)
201 2qag_B Septin-6, protein NEDD5 99.5 5.9E-15 2E-19 172.0 3.3 178 162-347 16-218 (427)
202 1pzn_A RAD51, DNA repair and r 99.5 1.7E-15 5.9E-20 174.6 -1.2 157 179-370 118-309 (349)
203 1pui_A ENGB, probable GTP-bind 99.5 5.4E-16 1.8E-20 165.5 -6.0 162 162-338 3-200 (210)
204 3szr_A Interferon-induced GTP- 99.4 1.2E-15 4.1E-20 188.4 -6.5 176 162-372 10-233 (608)
205 1nlf_A Regulatory protein REPA 99.4 6.5E-14 2.2E-18 156.7 8.1 151 810-985 26-184 (279)
206 3kta_B Chromosome segregation 99.4 1.9E-13 6.5E-18 140.9 10.2 79 286-365 62-146 (173)
207 2cvh_A DNA repair and recombin 99.4 2.4E-13 8.3E-18 145.9 10.5 149 802-997 7-185 (220)
208 1nij_A Hypothetical protein YJ 99.4 1E-14 3.6E-19 166.2 -0.6 154 815-985 5-192 (318)
209 1zp6_A Hypothetical protein AT 99.4 2.3E-15 8E-20 158.2 -5.7 139 810-969 5-147 (191)
210 1nlf_A Regulatory protein REPA 99.4 1.8E-13 6.2E-18 153.1 9.2 147 187-351 26-184 (279)
211 2ewv_A Twitching motility prot 99.4 2E-16 6.8E-21 183.9 -16.0 168 179-350 126-353 (372)
212 1lw7_A Transcriptional regulat 99.4 3.4E-16 1.1E-20 182.3 -14.7 141 180-347 157-328 (365)
213 1n0w_A DNA repair protein RAD5 99.4 2.7E-13 9.2E-18 148.0 9.2 146 810-997 20-209 (243)
214 1rj9_A FTSY, signal recognitio 99.4 5.7E-14 2E-18 158.3 3.6 138 190-350 101-260 (304)
215 1odf_A YGR205W, hypothetical 3 99.4 4.7E-15 1.6E-19 166.2 -7.9 128 813-958 30-169 (290)
216 1odf_A YGR205W, hypothetical 3 99.4 3.8E-15 1.3E-19 166.9 -8.7 128 190-323 30-169 (290)
217 4ad8_A DNA repair protein RECN 99.4 4.7E-13 1.6E-17 162.8 8.5 78 286-364 394-474 (517)
218 2bdt_A BH3686; alpha-beta prot 99.4 1.1E-15 3.8E-20 160.7 -13.3 170 814-1009 2-183 (189)
219 2f1r_A Molybdopterin-guanine d 99.4 2.9E-15 9.8E-20 154.5 -10.1 99 192-310 3-125 (171)
220 2qm8_A GTPase/ATPase; G protei 99.3 2.2E-15 7.6E-20 172.8 -12.6 177 787-969 30-258 (337)
221 1s96_A Guanylate kinase, GMP k 99.3 8.1E-14 2.8E-18 149.8 -0.1 135 185-375 10-159 (219)
222 2cvh_A DNA repair and recombin 99.3 2.3E-12 7.8E-17 138.3 11.2 152 179-363 7-185 (220)
223 1htw_A HI0065; nucleotide-bind 99.3 7.6E-15 2.6E-19 149.4 -8.5 87 789-883 10-96 (158)
224 3c8u_A Fructokinase; YP_612366 99.3 6.3E-15 2.2E-19 157.5 -9.9 145 811-990 19-168 (208)
225 2yhs_A FTSY, cell division pro 99.3 1.8E-12 6.2E-17 152.7 8.4 150 804-980 283-447 (503)
226 2gza_A Type IV secretion syste 99.3 2E-13 6.8E-18 158.2 -2.5 206 98-364 63-303 (361)
227 1sxj_E Activator 1 40 kDa subu 99.3 4.3E-12 1.5E-16 146.8 7.5 139 815-985 37-177 (354)
228 2oap_1 GSPE-2, type II secreti 99.2 3.8E-14 1.3E-18 170.7 -10.7 173 802-989 248-458 (511)
229 2bbw_A Adenylate kinase 4, AK4 99.2 2E-13 6.9E-18 149.8 -5.0 138 813-970 26-197 (246)
230 3auy_A DNA double-strand break 99.2 1.4E-11 4.8E-16 143.5 10.1 74 922-995 279-359 (371)
231 3lda_A DNA repair protein RAD5 99.2 1.2E-11 4.1E-16 144.3 8.7 147 810-998 174-364 (400)
232 3e70_C DPA, signal recognition 99.2 1.2E-11 4.1E-16 140.7 8.2 160 811-1000 126-307 (328)
233 2rcn_A Probable GTPase ENGC; Y 99.2 9.6E-12 3.3E-16 142.2 6.5 122 803-939 205-329 (358)
234 3c8u_A Fructokinase; YP_612366 99.2 1E-13 3.4E-18 148.2 -9.3 133 188-350 19-160 (208)
235 1lvg_A Guanylate kinase, GMP k 99.2 4.5E-14 1.5E-18 149.7 -12.7 147 189-362 2-173 (198)
236 1p9r_A General secretion pathw 99.2 5.9E-14 2E-18 164.6 -13.0 141 787-946 144-314 (418)
237 1w1w_A Structural maintenance 99.2 3E-11 1E-15 143.5 10.0 74 288-361 333-410 (430)
238 3auy_A DNA double-strand break 99.2 5.2E-11 1.8E-15 138.6 10.3 76 286-362 278-360 (371)
239 2kjq_A DNAA-related protein; s 99.1 3.1E-11 1E-15 121.7 6.9 91 803-981 30-124 (149)
240 1zp6_A Hypothetical protein AT 99.1 3.7E-12 1.2E-16 133.7 0.1 127 187-332 5-145 (191)
241 3ec2_A DNA replication protein 99.1 5E-11 1.7E-15 124.0 7.8 112 185-349 32-144 (180)
242 2bdt_A BH3686; alpha-beta prot 99.1 4.3E-14 1.5E-18 148.4 -16.0 164 191-374 2-182 (189)
243 3ec2_A DNA replication protein 99.1 3.7E-11 1.3E-15 125.0 6.2 111 808-983 32-144 (180)
244 2bbw_A Adenylate kinase 4, AK4 99.1 2.2E-12 7.5E-17 141.5 -3.5 138 190-334 26-196 (246)
245 1htw_A HI0065; nucleotide-bind 99.1 1.1E-11 3.7E-16 126.1 1.2 81 166-250 11-99 (158)
246 1sq5_A Pantothenate kinase; P- 99.1 1.1E-12 3.9E-17 148.6 -7.2 139 785-956 36-199 (308)
247 2x8a_A Nuclear valosin-contain 99.1 7.6E-13 2.6E-17 147.5 -8.5 144 802-967 34-191 (274)
248 1n0w_A DNA repair protein RAD5 99.1 5E-10 1.7E-14 121.8 13.7 150 187-363 20-209 (243)
249 2yv5_A YJEQ protein; hydrolase 99.1 1.5E-11 5.2E-16 138.9 0.4 113 810-936 161-300 (302)
250 2kjq_A DNAA-related protein; s 99.1 1.4E-10 4.9E-15 116.7 7.2 94 180-347 30-124 (149)
251 2rcn_A Probable GTPase ENGC; Y 99.0 3.5E-11 1.2E-15 137.6 1.6 115 179-304 204-329 (358)
252 2yhs_A FTSY, cell division pro 99.0 7E-11 2.4E-15 139.3 4.0 144 181-346 283-447 (503)
253 1nij_A Hypothetical protein YJ 99.0 1.6E-11 5.4E-16 139.9 -2.7 143 192-352 5-193 (318)
254 1ls1_A Signal recognition part 99.0 2.5E-10 8.7E-15 128.3 6.6 138 787-975 77-215 (295)
255 1udx_A The GTP-binding protein 99.0 7.3E-11 2.5E-15 138.2 1.6 154 803-980 146-306 (416)
256 1udx_A The GTP-binding protein 99.0 1.5E-10 5.3E-15 135.5 4.2 151 181-346 147-306 (416)
257 3lnc_A Guanylate kinase, GMP k 99.0 2.2E-12 7.6E-17 140.0 -11.6 148 802-969 15-176 (231)
258 1u0l_A Probable GTPase ENGC; p 99.0 2.1E-10 7E-15 129.6 3.8 101 809-910 164-289 (301)
259 2qm8_A GTPase/ATPase; G protei 99.0 2.2E-11 7.4E-16 139.6 -4.5 162 163-334 30-258 (337)
260 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 3E-12 1E-16 148.4 -12.4 169 810-1005 16-208 (392)
261 1p9r_A General secretion pathw 98.9 3.7E-12 1.3E-16 149.4 -12.0 116 180-312 158-315 (418)
262 2oap_1 GSPE-2, type II secreti 98.9 8.8E-12 3E-16 150.1 -9.2 162 179-353 248-455 (511)
263 3lda_A DNA repair protein RAD5 98.9 4.6E-09 1.6E-13 122.4 12.0 150 187-363 174-363 (400)
264 3e70_C DPA, signal recognition 98.9 6.5E-11 2.2E-15 134.6 -4.4 135 187-347 125-278 (328)
265 1vma_A Cell division protein F 98.8 5.5E-09 1.9E-13 117.6 10.4 98 807-952 97-197 (306)
266 3euj_A Chromosome partition pr 98.8 1.3E-09 4.4E-14 129.3 5.1 65 788-857 8-72 (483)
267 2px0_A Flagellar biosynthesis 98.8 2.5E-09 8.4E-14 120.2 7.0 138 812-1001 103-246 (296)
268 1sxj_E Activator 1 40 kDa subu 98.8 3.4E-09 1.2E-13 122.3 8.2 129 193-352 38-178 (354)
269 2yv5_A YJEQ protein; hydrolase 98.8 1E-09 3.5E-14 123.8 1.4 103 186-301 160-300 (302)
270 3tr0_A Guanylate kinase, GMP k 98.8 1.3E-09 4.4E-14 115.5 2.0 72 808-883 1-73 (205)
271 2dr3_A UPF0273 protein PH0284; 98.7 6.8E-09 2.3E-13 113.0 6.3 166 802-996 10-196 (247)
272 1in4_A RUVB, holliday junction 98.7 8.1E-12 2.8E-16 143.4 -18.1 170 787-986 19-206 (334)
273 1t9h_A YLOQ, probable GTPase E 98.7 1.2E-09 4.1E-14 122.6 -1.9 71 810-882 169-247 (307)
274 1ni3_A YCHF GTPase, YCHF GTP-b 98.7 1.3E-10 4.6E-15 134.7 -10.4 157 187-371 16-208 (392)
275 1oix_A RAS-related protein RAB 98.7 2.7E-09 9.3E-14 111.9 0.5 142 816-968 31-188 (191)
276 1iy2_A ATP-dependent metallopr 98.7 8.2E-11 2.8E-15 131.4 -12.2 131 788-944 51-190 (278)
277 2zr9_A Protein RECA, recombina 98.7 4.6E-08 1.6E-12 112.3 10.4 143 810-1004 57-237 (349)
278 2px0_A Flagellar biosynthesis 98.6 2.3E-08 7.9E-13 112.2 7.3 138 189-367 103-246 (296)
279 1qhl_A Protein (cell division 98.6 8.9E-10 3E-14 118.4 -4.5 75 786-870 9-91 (227)
280 1cke_A CK, MSSA, protein (cyti 98.6 6.9E-10 2.4E-14 119.6 -5.8 128 814-952 5-151 (227)
281 2x8a_A Nuclear valosin-contain 98.6 5.5E-11 1.9E-15 132.4 -15.0 134 179-332 34-191 (274)
282 4e22_A Cytidylate kinase; P-lo 98.6 6E-09 2.1E-13 114.5 1.3 89 812-906 25-131 (252)
283 1vma_A Cell division protein F 98.6 2.2E-08 7.5E-13 112.7 4.3 98 184-317 97-197 (306)
284 2ius_A DNA translocase FTSK; n 98.6 4.1E-09 1.4E-13 125.8 -2.0 159 806-983 159-343 (512)
285 1ixz_A ATP-dependent metallopr 98.6 1.8E-10 6.3E-15 126.7 -12.7 137 787-951 26-171 (254)
286 3a00_A Guanylate kinase, GMP k 98.5 3.8E-08 1.3E-12 102.8 3.8 47 814-862 1-60 (186)
287 2r6a_A DNAB helicase, replicat 98.5 1.4E-07 4.7E-12 112.7 8.5 177 802-999 191-401 (454)
288 1in4_A RUVB, holliday junction 98.5 1.3E-09 4.5E-14 124.9 -8.9 143 163-333 19-191 (334)
289 3k1j_A LON protease, ATP-depen 98.5 2.8E-08 9.6E-13 123.0 2.0 155 802-968 48-227 (604)
290 1ls1_A Signal recognition part 98.5 2.1E-07 7.2E-12 104.4 8.9 127 164-330 78-205 (295)
291 2dr3_A UPF0273 protein PH0284; 98.5 1.7E-07 5.8E-12 101.9 7.9 169 179-362 10-196 (247)
292 2dy1_A Elongation factor G; tr 98.5 7.5E-08 2.6E-12 120.1 5.6 133 808-985 3-139 (665)
293 1sq5_A Pantothenate kinase; P- 98.5 1.9E-09 6.4E-14 122.2 -8.1 57 162-223 37-114 (308)
294 1t9h_A YLOQ, probable GTPase E 98.5 2.3E-08 7.7E-13 112.3 0.3 62 186-248 168-248 (307)
295 3euj_A Chromosome partition pr 98.4 1.1E-07 3.9E-12 112.6 6.1 45 179-224 18-62 (483)
296 3k1j_A LON protease, ATP-depen 98.4 9E-09 3.1E-13 127.4 -4.2 148 178-332 47-226 (604)
297 1u0l_A Probable GTPase ENGC; p 98.4 6E-08 2.1E-12 109.3 2.7 89 186-275 164-289 (301)
298 3tr0_A Guanylate kinase, GMP k 98.4 2.7E-08 9.2E-13 105.2 -1.6 64 185-248 1-73 (205)
299 2f9l_A RAB11B, member RAS onco 98.4 1.5E-07 5.2E-12 99.0 4.1 36 932-969 130-165 (199)
300 1svm_A Large T antigen; AAA+ f 98.4 6.7E-09 2.3E-13 120.0 -6.9 136 802-952 157-312 (377)
301 3lnc_A Guanylate kinase, GMP k 98.4 8.8E-08 3E-12 103.6 1.8 39 179-217 15-54 (231)
302 2r6a_A DNAB helicase, replicat 98.3 6.2E-07 2.1E-11 107.1 8.4 167 179-364 191-400 (454)
303 2zr9_A Protein RECA, recombina 98.3 8.3E-07 2.8E-11 101.9 7.5 143 187-368 57-235 (349)
304 3ney_A 55 kDa erythrocyte memb 98.2 3.1E-07 1.1E-11 96.2 2.4 69 809-882 14-95 (197)
305 2ius_A DNA translocase FTSK; n 98.2 1.5E-07 5E-12 112.5 -0.6 158 183-349 159-343 (512)
306 4eun_A Thermoresistant glucoki 98.2 2.8E-07 9.5E-12 97.3 0.6 64 804-872 19-82 (200)
307 2ce7_A Cell division protein F 98.2 1.7E-06 5.9E-11 102.9 7.3 123 802-994 39-183 (476)
308 1kgd_A CASK, peripheral plasma 98.2 3.6E-07 1.2E-11 94.8 1.2 67 812-881 3-80 (180)
309 2ce7_A Cell division protein F 98.2 3E-06 1E-10 100.8 9.1 115 180-352 40-168 (476)
310 3nwj_A ATSK2; P loop, shikimat 98.1 1.8E-07 6.3E-12 102.1 -1.8 52 786-838 17-72 (250)
311 1iy2_A ATP-dependent metallopr 98.1 9.1E-09 3.1E-13 114.7 -12.5 118 165-309 52-190 (278)
312 3nwj_A ATSK2; P loop, shikimat 98.1 2.2E-07 7.5E-12 101.5 -1.2 53 161-215 16-72 (250)
313 2qtf_A Protein HFLX, GTP-bindi 98.1 1.1E-06 3.9E-11 101.3 4.6 143 816-970 181-352 (364)
314 3uie_A Adenylyl-sulfate kinase 98.1 1.1E-07 3.8E-12 100.4 -4.0 60 791-853 4-65 (200)
315 2dhr_A FTSH; AAA+ protein, hex 98.1 9.5E-08 3.2E-12 114.4 -5.2 137 788-952 42-187 (499)
316 2j41_A Guanylate kinase; GMP, 98.1 9E-07 3.1E-11 93.5 2.8 62 809-873 1-62 (207)
317 1zu4_A FTSY; GTPase, signal re 98.1 7.5E-07 2.6E-11 100.9 1.7 68 803-870 94-171 (320)
318 3hr8_A Protein RECA; alpha and 98.1 4.2E-06 1.4E-10 95.8 7.8 59 810-871 57-116 (356)
319 1jjv_A Dephospho-COA kinase; P 98.1 2.2E-06 7.6E-11 90.6 4.8 70 924-996 60-132 (206)
320 1oix_A RAS-related protein RAB 98.0 2.6E-06 9E-11 88.9 4.9 37 295-333 152-188 (191)
321 1qhl_A Protein (cell division 98.0 2.8E-07 9.5E-12 99.0 -2.8 50 162-222 9-58 (227)
322 3t34_A Dynamin-related protein 98.0 7.6E-06 2.6E-10 94.6 9.0 42 178-222 24-67 (360)
323 2xau_A PRE-mRNA-splicing facto 98.0 5E-06 1.7E-10 105.3 7.6 68 922-989 189-260 (773)
324 2qt1_A Nicotinamide riboside k 98.0 1.4E-06 4.9E-11 92.2 2.2 44 810-876 17-60 (207)
325 2xau_A PRE-mRNA-splicing facto 98.0 1.3E-06 4.5E-11 110.6 1.6 146 187-352 105-256 (773)
326 3kta_A Chromosome segregation 98.0 4.1E-06 1.4E-10 86.6 4.8 38 182-220 18-55 (182)
327 1cke_A CK, MSSA, protein (cyti 98.0 2.2E-07 7.5E-12 99.9 -5.2 115 191-316 5-150 (227)
328 3kta_A Chromosome segregation 98.0 1.3E-06 4.4E-11 90.4 0.7 66 805-871 18-89 (182)
329 3vaa_A Shikimate kinase, SK; s 98.0 3E-06 1E-10 89.2 3.5 45 171-215 5-49 (199)
330 3kl4_A SRP54, signal recogniti 97.9 1.9E-05 6.4E-10 92.6 10.3 40 813-852 96-135 (433)
331 2e87_A Hypothetical protein PH 97.9 1.8E-05 6.2E-10 91.3 10.0 121 192-348 168-292 (357)
332 2e87_A Hypothetical protein PH 97.9 2E-05 6.7E-10 91.0 9.6 61 922-983 230-293 (357)
333 3a00_A Guanylate kinase, GMP k 97.8 2.5E-06 8.4E-11 88.9 0.3 28 191-218 1-28 (186)
334 2vp4_A Deoxynucleoside kinase; 97.8 1.7E-06 5.9E-11 93.4 -1.0 62 809-874 15-86 (230)
335 2j41_A Guanylate kinase; GMP, 97.8 9.6E-06 3.3E-10 85.5 3.7 35 186-220 1-35 (207)
336 4e22_A Cytidylate kinase; P-lo 97.8 1.7E-06 5.9E-11 94.8 -2.2 60 189-248 25-114 (252)
337 1jjv_A Dephospho-COA kinase; P 97.8 1.9E-05 6.4E-10 83.4 5.7 70 289-362 60-132 (206)
338 3t34_A Dynamin-related protein 97.8 5.4E-05 1.8E-09 87.4 10.0 46 802-850 25-72 (360)
339 4a1f_A DNAB helicase, replicat 97.8 2.6E-05 8.9E-10 88.6 6.9 126 179-346 34-164 (338)
340 3tqc_A Pantothenate kinase; bi 97.8 5E-07 1.7E-11 102.0 -7.2 126 179-321 74-211 (321)
341 3tau_A Guanylate kinase, GMP k 97.7 6.3E-06 2.2E-10 87.4 1.6 29 812-840 6-34 (208)
342 4a1f_A DNAB helicase, replicat 97.7 3.8E-05 1.3E-09 87.2 7.7 131 802-980 34-164 (338)
343 3vaa_A Shikimate kinase, SK; s 97.7 1.5E-05 5.3E-10 83.7 3.7 38 801-838 12-49 (199)
344 1rz3_A Hypothetical protein rb 97.6 1.4E-05 4.6E-10 84.4 2.0 45 811-855 19-63 (201)
345 2f9l_A RAB11B, member RAS onco 97.6 6.8E-05 2.3E-09 78.5 7.3 35 297-333 130-164 (199)
346 3cr8_A Sulfate adenylyltranfer 97.6 3.1E-06 1.1E-10 102.5 -3.7 43 810-852 365-409 (552)
347 1fnn_A CDC6P, cell division co 97.6 0.00021 7.2E-09 82.8 11.9 127 189-352 40-173 (389)
348 3ice_A Transcription terminati 97.6 1E-05 3.5E-10 91.9 0.5 55 784-839 131-199 (422)
349 1fnn_A CDC6P, cell division co 97.6 0.00011 3.9E-09 85.0 8.7 45 940-985 124-172 (389)
350 1kgd_A CASK, peripheral plasma 97.6 3E-05 1E-09 80.1 3.3 29 189-217 3-31 (180)
351 2qt1_A Nicotinamide riboside k 97.5 5.1E-05 1.8E-09 80.1 4.8 45 186-241 16-60 (207)
352 2z43_A DNA repair and recombin 97.5 6.2E-05 2.1E-09 85.6 5.7 28 810-837 103-130 (324)
353 2z4s_A Chromosomal replication 97.5 4.6E-05 1.6E-09 90.3 4.6 67 940-1006 193-264 (440)
354 2dy1_A Elongation factor G; tr 97.5 2.9E-05 1E-09 96.7 2.3 123 185-351 3-139 (665)
355 3tqc_A Pantothenate kinase; bi 97.5 2.1E-05 7.2E-10 88.7 0.7 46 802-847 74-127 (321)
356 1zu4_A FTSY; GTPase, signal re 97.5 4.3E-05 1.5E-09 86.5 3.2 41 181-221 95-135 (320)
357 3bh0_A DNAB-like replicative h 97.4 0.00013 4.3E-09 82.6 6.8 129 179-346 56-189 (315)
358 3ice_A Transcription terminati 97.4 2.2E-05 7.7E-10 89.2 0.4 52 162-215 133-198 (422)
359 1knq_A Gluconate kinase; ALFA/ 97.4 4.4E-05 1.5E-09 78.2 2.5 38 812-853 6-43 (175)
360 2ffh_A Protein (FFH); SRP54, s 97.4 0.00034 1.2E-08 81.8 10.3 148 805-980 91-246 (425)
361 3uie_A Adenylyl-sulfate kinase 97.4 2.7E-05 9.2E-10 81.9 0.8 43 178-221 12-54 (200)
362 2qtf_A Protein HFLX, GTP-bindi 97.4 5E-05 1.7E-09 87.6 3.1 48 282-333 298-350 (364)
363 3tau_A Guanylate kinase, GMP k 97.4 7.5E-05 2.6E-09 79.1 4.0 29 189-217 6-34 (208)
364 1v5w_A DMC1, meiotic recombina 97.4 0.00012 4.1E-09 83.9 5.9 28 810-837 118-145 (343)
365 1v5w_A DMC1, meiotic recombina 97.4 0.00048 1.6E-08 78.8 10.4 136 187-349 118-275 (343)
366 3hr8_A Protein RECA; alpha and 97.3 0.0011 3.7E-08 75.8 13.0 50 180-236 48-99 (356)
367 1ega_A Protein (GTP-binding pr 97.3 4.6E-05 1.6E-09 85.7 1.0 147 813-991 7-169 (301)
368 3ney_A 55 kDa erythrocyte memb 97.3 0.00011 3.8E-09 76.8 3.7 32 185-216 13-44 (197)
369 1svm_A Large T antigen; AAA+ f 97.3 5E-05 1.7E-09 87.7 1.1 37 179-215 157-193 (377)
370 4eun_A Thermoresistant glucoki 97.3 0.00011 3.7E-09 77.3 3.5 31 185-215 23-53 (200)
371 1sxj_C Activator 1 40 kDa subu 97.3 5.7E-05 1.9E-09 86.4 1.1 43 802-844 32-76 (340)
372 3m6a_A ATP-dependent protease 97.2 5.7E-05 2E-09 91.9 0.5 60 789-851 86-145 (543)
373 1ega_A Protein (GTP-binding pr 97.2 0.00028 9.5E-09 79.2 5.9 48 189-236 6-55 (301)
374 2p67_A LAO/AO transport system 97.2 5.2E-05 1.8E-09 86.8 -0.3 51 802-852 44-94 (341)
375 2qby_A CDC6 homolog 1, cell di 97.2 0.00039 1.3E-08 80.2 7.0 30 189-218 43-72 (386)
376 3bh0_A DNAB-like replicative h 97.2 0.00041 1.4E-08 78.4 6.8 108 802-953 56-163 (315)
377 2qby_A CDC6 homolog 1, cell di 97.1 0.00044 1.5E-08 79.7 6.8 31 812-842 43-73 (386)
378 1rz3_A Hypothetical protein rb 97.1 0.00011 3.8E-09 77.2 1.5 34 187-220 18-51 (201)
379 3b9p_A CG5977-PA, isoform A; A 97.1 0.0012 4E-08 73.7 9.8 115 190-360 53-186 (297)
380 3b9p_A CG5977-PA, isoform A; A 97.1 0.0027 9.1E-08 70.8 12.5 70 925-994 97-186 (297)
381 3lxx_A GTPase IMAP family memb 97.1 0.0019 6.7E-08 69.5 10.9 29 816-844 31-59 (239)
382 2z4s_A Chromosomal replication 97.1 0.00048 1.6E-08 81.6 6.5 45 305-349 193-238 (440)
383 2www_A Methylmalonic aciduria 97.1 0.00016 5.4E-09 83.0 2.2 43 812-854 72-114 (349)
384 1mky_A Probable GTP-binding pr 97.1 0.00028 9.4E-09 83.7 4.3 55 816-870 182-248 (439)
385 2pez_A Bifunctional 3'-phospho 97.0 0.00014 4.7E-09 74.8 1.4 40 812-852 3-44 (179)
386 1ixz_A ATP-dependent metallopr 97.0 0.00011 3.6E-09 80.3 0.5 49 163-216 26-74 (254)
387 2z43_A DNA repair and recombin 97.0 0.0015 5E-08 74.1 10.0 136 187-349 103-259 (324)
388 1ypw_A Transitional endoplasmi 97.0 0.00013 4.4E-09 93.0 1.2 32 809-840 233-264 (806)
389 1j8m_F SRP54, signal recogniti 97.0 0.0008 2.7E-08 75.2 7.5 48 805-853 89-137 (297)
390 3lxx_A GTPase IMAP family memb 97.0 0.0022 7.6E-08 69.1 10.8 28 193-220 31-58 (239)
391 1kag_A SKI, shikimate kinase I 97.0 0.00024 8.3E-09 72.3 2.8 27 190-216 3-29 (173)
392 2vp4_A Deoxynucleoside kinase; 97.0 0.00024 8.2E-09 76.4 2.2 31 184-214 13-43 (230)
393 3kl4_A SRP54, signal recogniti 96.9 0.0018 6.1E-08 75.8 9.6 107 190-329 96-205 (433)
394 1kag_A SKI, shikimate kinase I 96.9 0.00034 1.2E-08 71.2 3.0 32 813-848 3-34 (173)
395 4eaq_A DTMP kinase, thymidylat 96.9 0.00031 1.1E-08 75.5 2.7 44 804-848 13-59 (229)
396 1knq_A Gluconate kinase; ALFA/ 96.9 0.00037 1.3E-08 71.2 3.1 27 189-215 6-32 (175)
397 1f2t_A RAD50 ABC-ATPase; DNA d 96.9 0.00046 1.6E-08 68.9 3.7 31 182-213 15-45 (149)
398 1f6b_A SAR1; gtpases, N-termin 96.9 0.00022 7.6E-09 74.6 1.3 42 793-836 6-47 (198)
399 1ypw_A Transitional endoplasmi 96.9 0.0013 4.4E-08 83.8 8.4 33 807-839 504-536 (806)
400 3cr8_A Sulfate adenylyltranfer 96.9 0.00022 7.5E-09 86.3 1.1 34 187-220 365-398 (552)
401 1u94_A RECA protein, recombina 96.8 0.007 2.4E-07 69.3 13.4 37 803-839 50-88 (356)
402 1l8q_A Chromosomal replication 96.8 0.0014 4.9E-08 74.1 7.3 28 190-217 36-63 (324)
403 1lv7_A FTSH; alpha/beta domain 96.8 0.0038 1.3E-07 68.0 10.3 42 804-849 37-78 (257)
404 1m7g_A Adenylylsulfate kinase; 96.8 0.00023 7.9E-09 75.4 0.4 42 809-850 20-63 (211)
405 1f2t_A RAD50 ABC-ATPase; DNA d 96.8 0.00075 2.6E-08 67.4 4.0 31 805-836 15-45 (149)
406 3llm_A ATP-dependent RNA helic 96.8 0.00049 1.7E-08 74.2 2.7 130 188-333 73-204 (235)
407 1m2o_B GTP-binding protein SAR 96.7 0.00082 2.8E-08 69.6 4.3 34 802-836 12-45 (190)
408 3llm_A ATP-dependent RNA helic 96.7 0.001 3.5E-08 71.6 5.0 26 811-836 73-98 (235)
409 1l8q_A Chromosomal replication 96.7 0.0045 1.6E-07 69.9 10.2 29 813-841 36-64 (324)
410 2gj8_A MNME, tRNA modification 96.7 0.001 3.5E-08 67.7 4.3 27 812-838 2-28 (172)
411 3r20_A Cytidylate kinase; stru 96.6 0.00081 2.8E-08 72.2 3.1 32 814-845 9-43 (233)
412 3cf0_A Transitional endoplasmi 96.6 0.0057 2E-07 68.4 10.1 38 809-848 44-81 (301)
413 2p67_A LAO/AO transport system 96.6 0.00028 9.6E-09 80.7 -0.7 52 179-237 44-95 (341)
414 2qor_A Guanylate kinase; phosp 96.6 0.00048 1.6E-08 72.5 1.0 30 810-839 8-37 (204)
415 2w58_A DNAI, primosome compone 96.6 0.0019 6.6E-08 67.5 5.7 27 815-841 55-81 (202)
416 4eaq_A DTMP kinase, thymidylat 96.6 0.0009 3.1E-08 71.9 3.1 38 180-217 12-52 (229)
417 4fcw_A Chaperone protein CLPB; 96.6 0.0052 1.8E-07 68.7 9.5 32 814-845 47-78 (311)
418 1sxj_D Activator 1 41 kDa subu 96.5 0.00062 2.1E-08 77.8 1.5 44 941-985 133-176 (353)
419 3h4m_A Proteasome-activating n 96.5 0.0058 2E-07 67.5 9.0 28 188-215 48-75 (285)
420 3dm5_A SRP54, signal recogniti 96.4 0.014 4.7E-07 68.4 11.9 35 813-847 99-133 (443)
421 2ohf_A Protein OLA1, GTP-bindi 96.4 0.0016 5.4E-08 75.3 3.7 41 810-850 18-69 (396)
422 2qag_A Septin-2, protein NEDD5 96.3 0.00043 1.5E-08 79.7 -1.3 58 784-849 15-72 (361)
423 3bos_A Putative DNA replicatio 96.3 0.0029 1E-07 67.5 5.4 27 190-216 51-77 (242)
424 4fcw_A Chaperone protein CLPB; 96.3 0.0058 2E-07 68.3 8.0 28 192-219 48-75 (311)
425 1y63_A LMAJ004144AAA protein; 96.3 0.0018 6E-08 66.9 3.3 32 183-214 2-33 (184)
426 3qks_A DNA double-strand break 96.2 0.0021 7.3E-08 67.6 3.7 31 182-213 15-45 (203)
427 2yvu_A Probable adenylyl-sulfa 96.2 0.0018 6.1E-08 66.9 2.9 37 810-846 9-45 (186)
428 2wji_A Ferrous iron transport 96.2 0.0038 1.3E-07 62.8 5.1 24 816-839 5-28 (165)
429 2pez_A Bifunctional 3'-phospho 96.2 0.0021 7.2E-08 65.8 3.2 29 189-217 3-31 (179)
430 1njg_A DNA polymerase III subu 96.2 0.0056 1.9E-07 65.0 6.6 45 940-985 125-169 (250)
431 2w58_A DNAI, primosome compone 96.2 0.0037 1.3E-07 65.3 4.9 26 192-217 55-80 (202)
432 2www_A Methylmalonic aciduria 96.1 0.0014 4.9E-08 75.0 1.8 41 190-237 73-113 (349)
433 3h4m_A Proteasome-activating n 96.1 0.012 4.2E-07 64.8 9.4 28 811-838 48-75 (285)
434 2wjg_A FEOB, ferrous iron tran 96.1 0.0031 1E-07 64.7 4.1 22 816-837 9-30 (188)
435 1y63_A LMAJ004144AAA protein; 96.1 0.0024 8.3E-08 65.9 3.2 32 806-837 2-33 (184)
436 3m6a_A ATP-dependent protease 96.1 0.00093 3.2E-08 81.2 -0.2 39 179-218 97-135 (543)
437 2q6t_A DNAB replication FORK h 96.1 0.01 3.5E-07 70.3 8.7 129 179-346 188-318 (444)
438 3bos_A Putative DNA replicatio 96.1 0.0047 1.6E-07 65.9 5.3 28 813-840 51-78 (242)
439 2qor_A Guanylate kinase; phosp 96.0 0.0022 7.6E-08 67.3 2.6 30 187-216 8-37 (204)
440 2gj8_A MNME, tRNA modification 96.0 0.0032 1.1E-07 64.0 3.6 27 189-215 2-28 (172)
441 3qks_A DNA double-strand break 96.0 0.0038 1.3E-07 65.6 4.0 30 805-835 15-44 (203)
442 1np6_A Molybdopterin-guanine d 95.9 0.0032 1.1E-07 64.4 3.1 38 814-851 6-46 (174)
443 1m2o_B GTP-binding protein SAR 95.9 0.0043 1.5E-07 64.1 4.0 35 179-214 12-46 (190)
444 4dcu_A GTP-binding protein ENG 95.9 0.0075 2.6E-07 71.6 6.6 57 926-985 87-144 (456)
445 3lxw_A GTPase IMAP family memb 95.9 0.0097 3.3E-07 64.5 6.9 23 816-838 23-45 (247)
446 4dcu_A GTP-binding protein ENG 95.9 0.0063 2.2E-07 72.3 5.8 55 291-349 87-142 (456)
447 2if2_A Dephospho-COA kinase; a 95.9 0.0033 1.1E-07 65.7 2.9 21 193-213 3-23 (204)
448 1f6b_A SAR1; gtpases, N-termin 95.9 0.0012 4E-08 69.0 -0.7 43 169-214 6-48 (198)
449 1u94_A RECA protein, recombina 95.8 0.0064 2.2E-07 69.6 5.2 36 179-215 49-87 (356)
450 3lxw_A GTPase IMAP family memb 95.8 0.022 7.6E-07 61.6 9.2 60 290-350 86-151 (247)
451 3t61_A Gluconokinase; PSI-biol 95.8 0.0026 8.9E-08 66.6 1.7 32 814-849 18-49 (202)
452 2dhr_A FTSH; AAA+ protein, hex 95.8 0.002 6.9E-08 77.0 0.9 36 179-216 54-89 (499)
453 1m7g_A Adenylylsulfate kinase; 95.7 0.0015 5.2E-08 69.0 -0.3 35 186-220 20-54 (211)
454 2if2_A Dephospho-COA kinase; a 95.7 0.0045 1.5E-07 64.7 3.3 21 816-836 3-23 (204)
455 2i1q_A DNA repair and recombin 95.7 0.027 9.3E-07 63.4 10.0 27 810-836 94-120 (322)
456 3n70_A Transport activator; si 95.6 0.035 1.2E-06 54.6 9.2 28 813-840 23-50 (145)
457 2yvu_A Probable adenylyl-sulfa 95.6 0.0029 1E-07 65.2 1.3 32 187-218 9-40 (186)
458 2p5t_B PEZT; postsegregational 95.6 0.0031 1.1E-07 68.6 1.4 41 810-852 28-68 (253)
459 2zej_A Dardarin, leucine-rich 95.6 0.006 2E-07 62.6 3.4 26 816-841 4-29 (184)
460 2ga8_A Hypothetical 39.9 kDa p 95.6 0.0022 7.7E-08 72.6 0.1 38 179-216 10-49 (359)
461 1xp8_A RECA protein, recombina 95.5 0.063 2.2E-06 61.5 12.2 28 810-837 70-97 (366)
462 2q6t_A DNAB replication FORK h 95.5 0.03 1E-06 66.2 9.6 107 802-953 188-294 (444)
463 2ffh_A Protein (FFH); SRP54, s 95.5 0.0041 1.4E-07 72.7 2.0 37 182-220 91-127 (425)
464 2ga8_A Hypothetical 39.9 kDa p 95.5 0.0021 7.1E-08 72.9 -0.6 38 802-839 10-49 (359)
465 2wji_A Ferrous iron transport 95.5 0.0086 3E-07 60.1 4.1 24 193-216 5-28 (165)
466 1njg_A DNA polymerase III subu 95.4 0.019 6.6E-07 60.7 7.0 45 305-351 125-169 (250)
467 4ag6_A VIRB4 ATPase, type IV s 95.4 0.0066 2.3E-07 70.6 3.5 36 813-848 34-69 (392)
468 2zej_A Dardarin, leucine-rich 95.3 0.0079 2.7E-07 61.6 3.4 25 193-217 4-28 (184)
469 3t61_A Gluconokinase; PSI-biol 95.3 0.0067 2.3E-07 63.3 2.9 25 191-215 18-42 (202)
470 3cm0_A Adenylate kinase; ATP-b 95.3 0.0072 2.5E-07 62.0 2.9 26 189-214 2-27 (186)
471 1jal_A YCHF protein; nucleotid 95.3 0.012 4.1E-07 67.2 4.9 36 814-849 2-48 (363)
472 1j8m_F SRP54, signal recogniti 95.3 0.003 1E-07 70.5 -0.1 45 184-236 92-136 (297)
473 2qgz_A Helicase loader, putati 95.2 0.012 4E-07 66.1 4.5 26 814-839 152-177 (308)
474 3syl_A Protein CBBX; photosynt 95.2 0.14 4.6E-06 57.0 13.2 26 814-839 67-92 (309)
475 2qag_A Septin-2, protein NEDD5 95.1 0.0021 7E-08 74.0 -2.0 48 162-218 17-64 (361)
476 3ihw_A Centg3; RAS, centaurin, 95.1 0.018 6.1E-07 59.1 5.3 28 816-843 22-54 (184)
477 2v1u_A Cell division control p 95.1 0.02 6.8E-07 65.8 6.3 29 812-840 42-70 (387)
478 3cm0_A Adenylate kinase; ATP-b 95.1 0.0094 3.2E-07 61.1 3.0 27 812-838 2-28 (186)
479 1q3t_A Cytidylate kinase; nucl 95.1 0.011 3.6E-07 63.6 3.5 28 188-215 13-40 (236)
480 1lv7_A FTSH; alpha/beta domain 95.0 0.008 2.7E-07 65.4 2.5 34 181-216 37-70 (257)
481 3bgw_A DNAB-like replicative h 95.0 0.024 8.1E-07 67.0 6.7 129 180-346 186-318 (444)
482 1q3t_A Cytidylate kinase; nucl 95.0 0.012 4.1E-07 63.2 3.7 28 811-838 13-40 (236)
483 3d8b_A Fidgetin-like protein 1 94.9 0.093 3.2E-06 60.0 11.1 26 813-838 116-141 (357)
484 2b8t_A Thymidine kinase; deoxy 94.9 0.032 1.1E-06 59.3 6.5 51 941-995 89-150 (223)
485 1qhx_A CPT, protein (chloramph 94.9 0.014 4.9E-07 59.2 3.7 27 190-216 2-28 (178)
486 1fzq_A ADP-ribosylation factor 94.8 0.014 4.9E-07 59.5 3.6 23 815-837 17-39 (181)
487 2wjg_A FEOB, ferrous iron tran 94.8 0.014 4.7E-07 59.7 3.3 22 193-214 9-30 (188)
488 2p5t_B PEZT; postsegregational 94.8 0.0066 2.3E-07 66.1 0.9 29 188-216 29-57 (253)
489 3bgw_A DNAB-like replicative h 94.8 0.052 1.8E-06 64.0 8.7 34 803-836 186-219 (444)
490 3n70_A Transport activator; si 94.8 0.084 2.9E-06 51.8 8.9 28 190-217 23-50 (145)
491 3kb2_A SPBC2 prophage-derived 94.7 0.015 5E-07 58.6 3.4 23 193-215 3-25 (173)
492 3d8b_A Fidgetin-like protein 1 94.7 0.083 2.8E-06 60.4 10.1 27 189-215 115-141 (357)
493 1np6_A Molybdopterin-guanine d 94.7 0.015 5.1E-07 59.4 3.2 27 191-217 6-32 (174)
494 2qz4_A Paraplegin; AAA+, SPG7, 94.7 0.13 4.3E-06 55.6 10.9 27 812-838 37-63 (262)
495 2ohf_A Protein OLA1, GTP-bindi 94.6 0.012 4.2E-07 67.8 2.7 29 187-215 18-46 (396)
496 3cmw_A Protein RECA, recombina 94.6 0.12 4E-06 69.8 12.3 36 810-845 728-763 (1706)
497 2vhj_A Ntpase P4, P4; non- hyd 94.6 0.045 1.5E-06 61.1 7.0 29 186-214 118-146 (331)
498 1sxj_C Activator 1 40 kDa subu 94.6 0.0058 2E-07 69.6 -0.3 41 178-218 31-73 (340)
499 1qhx_A CPT, protein (chloramph 94.5 0.02 7E-07 58.1 3.8 27 813-839 2-28 (178)
500 1kht_A Adenylate kinase; phosp 94.5 0.019 6.5E-07 58.9 3.6 26 190-215 2-27 (192)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=7.7e-140 Score=1396.68 Aligned_cols=1010 Identities=20% Similarity=0.251 Sum_probs=756.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 4 VQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPV 83 (1171)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~ 83 (1171)
+..++.+++++..++.+++.+++.+.+.|+++||++||+|+||+.+.+++.+..++..+...+.....++...+...+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (1321)
T 4f4c_A 252 CGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNF 331 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888899999999999999999999999999999999999999887777666655555555444333333322
Q ss_pred --HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCC---CCCC
Q 001055 84 --LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP---PLTS 158 (1171)
Q Consensus 84 --~~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~---~~~~ 158 (1171)
.+.++++|.+.+..|.++++.+++++.++..+..|+..+++.+..+.++.+|++||.++++.++....+.. ...+
T Consensus 332 ~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~ 411 (1321)
T 4f4c_A 332 ISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMK 411 (1321)
T ss_dssp HHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCC
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccccccccCCC
Confidence 23456778899999999999999999999999999999999999999999999999999987654322111 1112
Q ss_pred CCCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ec
Q 001055 159 GLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IR 226 (1171)
Q Consensus 159 ~~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~ 226 (1171)
....|+++|++|+|+..+++++|+|+||+|++|++++||||||||||||+++|+|+++|++|.+.. +|
T Consensus 412 ~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr 491 (1321)
T 4f4c_A 412 IKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLR 491 (1321)
T ss_dssp CCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHH
T ss_pred CCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHh
Confidence 223699999999998767789999999999999999999999999999999999999999886542 34
Q ss_pred CcEEEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhcc
Q 001055 227 GTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYS 305 (1171)
Q Consensus 227 ~~i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~ 305 (1171)
++||||+|+||+|++||+|||.||.+ .+++++.++++.|+++++++.+|+|++|.+|++|.+|||||||||+||||||+
T Consensus 492 ~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~ 571 (1321)
T 4f4c_A 492 KNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVR 571 (1321)
T ss_dssp HHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTT
T ss_pred hcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHcc
Confidence 57999999999999999999999975 57899999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHH
Q 001055 306 NSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 385 (1171)
Q Consensus 306 ~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 385 (1171)
+|+|||||||||+||+++++.+.+.+. ...+|+|+|+|||+++.+..||+|++|++|+|+++|+++|+++.++.|.+++
T Consensus 572 ~~~IliLDE~tSaLD~~te~~i~~~l~-~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~~~g~y~~l~ 650 (1321)
T 4f4c_A 572 NPKILLLDEATSALDAESEGIVQQALD-KAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLV 650 (1321)
T ss_dssp CCSEEEEESTTTTSCTTTHHHHHHHHH-HHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHTTTCHHHHHH
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHH-HHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHHhhhHHHHHH
Confidence 999999999999999999887777554 4457999999999999999999999999999999999999999999999888
Q ss_pred HHhchhhhhhhccccC---ccc-cCC-----CCCCCCCCCCCCCCC----------cc--ccccccccccc--hhhhhhh
Q 001055 386 ENAGKMEEYVEEKEDG---ETV-DNK-----TSKPAANGVDNDLPK----------EA--SDTRKTKEGKS--VLIKQEE 442 (1171)
Q Consensus 386 ~~~~~~~~~~~~~~~~---~~~-~~~-----~~~~~~~~~~~~~~~----------~~--~~~~~~~~~~~--~~~~~~~ 442 (1171)
..+...+...+..+.. +.. ... ..........+.... .. ...++...++. ....++.
T Consensus 651 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1321)
T 4f4c_A 651 TAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNGPVIDEKEERIGKDALSRLKQEL 730 (1321)
T ss_dssp HHHHHHHHHHHHHCC--------------------------------------------------CCCCCCHHHHHHHTT
T ss_pred HhhhcccccccccccccccccccccccccccccccccccccchhhhhhccccccccCCcchhHHHhhccchhHHHHHHHH
Confidence 7554322211110000 000 000 000000000000000 00 00000000000 0111122
Q ss_pred hccccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHHhhhhhhcccc----ccCCCCchHHHHHHHHHHHHHHHH
Q 001055 443 RETGVVSFKVLSRYKDALGGLWVVLILLLCYFLTETLRVSSSTWLSYWTDQS----SLKTHGPLFYNTIYSLLSFGQVLV 518 (1171)
Q Consensus 443 ~~~g~~~~~~l~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~i~~~l~~~~~~~ 518 (1171)
...+...+..++.++...+.++.+++.+++.++...+....+.|+..|.+.. ........+|..+|.+++++..++
T Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~ 810 (1321)
T 4f4c_A 731 EENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGIC 810 (1321)
T ss_dssp TTSCCCCCCHHHHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCcceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 2222222333333333333344444444444443334444444444443322 222233456777888888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccc--CChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001055 519 TLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHT--NPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVL 596 (1171)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~--~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~ 596 (1171)
.++..++....+.++..++|.+++++++++|+.||+. +++|+++||+++|++.++..++..+..++..++.++..+++
T Consensus 811 ~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~ 890 (1321)
T 4f4c_A 811 SFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGL 890 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeee
Confidence 9999999999999999999999999999999999985 89999999999999999999998888888888777777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001055 597 IGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIR 676 (1171)
Q Consensus 597 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~ 676 (1171)
+++..+...+++++++++++....++.+.............++....+.|+++|+++||+|+.++++.+.+.+..+...+
T Consensus 891 ~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~ 970 (1321)
T 4f4c_A 891 AFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHK 970 (1321)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred ehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 66666555444444443333333222221111111122233455667889999999999999999999999888887766
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 677 YTLVNMGANRWLAIRL----EIVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSL 752 (1171)
Q Consensus 677 ~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 752 (1171)
..........+..... .+...+++++++.+........+. ..+..++........++..+.......+...
T Consensus 971 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 1045 (1321)
T 4f4c_A 971 EAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQP-----MRVLRVMYAITISTSTLGFATSYFPEYAKAT 1045 (1321)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCH-----HHHHHHHHHHHTTTSSTTGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544333332222222 222222222222111111111111 1111111111112233444455666778888
Q ss_pred HHHHHHHhhhcCCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCC-CCCcceeeeEEEcCCCEEEEECCCCCcHHHHH
Q 001055 753 NAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSML 831 (1171)
Q Consensus 753 ~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~-~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl 831 (1171)
.+.+|+.++++.+++.+. ...+.+.||..|.|+|+||+|+|+.+ ..+||+|+||+|+|||+||||||||||||||+
T Consensus 1046 ~a~~ri~~~l~~~~~~~~---~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~ 1122 (1321)
T 4f4c_A 1046 FAGGIIFGMLRKISKIDS---LSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVV 1122 (1321)
T ss_dssp HHHHHHHHHHHCCCSSCT---TCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHH
T ss_pred HHHHHHHHHhhCcccCCC---ccCCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHH
Confidence 999999999987665322 22334456778899999999999753 23699999999999999999999999999999
Q ss_pred HHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCC---CCCCHHHHHHHHHHhcHHHHHHH
Q 001055 832 NTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPF---SEHSDADLWEALERAHLKDAIRR 908 (1171)
Q Consensus 832 ~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~---~~~~~~~i~~~l~~~~~~~~i~~ 908 (1171)
++|+|+|+|++|+|.+||+|+++++++++|++|+||||||.||++|||+||.++ .+.++++++++++.+++++++++
T Consensus 1123 ~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~ 1202 (1321)
T 4f4c_A 1123 ALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAE 1202 (1321)
T ss_dssp HHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHT
T ss_pred HHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHc
Confidence 999999999999999999999999999999999999999999999999998765 34689999999999999999999
Q ss_pred ccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhc
Q 001055 909 NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC 988 (1171)
Q Consensus 909 lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~ 988 (1171)
+|.||||.++++|.+|||||||||||||||+++|+|||||||||+||++|++.|++.|++.+++||+|+||||++++.+|
T Consensus 1203 Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~a 1282 (1321)
T 4f4c_A 1203 LPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNA 1282 (1321)
T ss_dssp STTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTC
T ss_pred CcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCcEEEEecChhHHhhcCCChHHHHHHhh
Q 001055 989 DRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 1023 (1171)
Q Consensus 989 d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~ 1023 (1171)
|||+||++|+|+|+|+|+||+++ ++.|++|++.+
T Consensus 1283 D~I~Vld~G~IvE~Gth~eLl~~-~g~y~~L~~~Q 1316 (1321)
T 4f4c_A 1283 DCIAVVSNGTIIEKGTHTQLMSE-KGAYYKLTQKQ 1316 (1321)
T ss_dssp SEEEEESSSSEEEEECHHHHHHC-C----------
T ss_pred CEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHHH
Confidence 99999999999999999999987 56798888754
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.6e-121 Score=1217.84 Aligned_cols=1004 Identities=21% Similarity=0.269 Sum_probs=716.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 001055 6 TFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIP--V 83 (1171)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~--~ 83 (1171)
.++.+++++..++.++..++..+.+.|.++|+++||+|++|+.+.+++.+..++..+...+.....++...+...+. .
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (1284)
T 3g5u_A 226 GIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYAS 305 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677888888888899999999999999999999999998888887666655554444433433332222222 2
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCC--C-CCCCCC
Q 001055 84 LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPN--P-PLTSGL 160 (1171)
Q Consensus 84 ~~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~--~-~~~~~~ 160 (1171)
.+.++++|.+.+..|.++++.+++++.++..+..|+..+...+..+..+..++.|+.++++.+++..... . ...+..
T Consensus 306 ~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~ 385 (1284)
T 3g5u_A 306 YALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQ 385 (1284)
T ss_dssp HHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCC
Confidence 3345678888999999999999988888888888999999999999999999999999998754322111 1 111122
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCc
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 228 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 228 (1171)
..|+++|++|+|+...++++|+|+||++++||++|||||||||||||+++|+|+++|++|.+.. ++..
T Consensus 386 g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 465 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI 465 (1284)
T ss_dssp CCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred CeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhh
Confidence 3699999999998655568999999999999999999999999999999999999999886532 2346
Q ss_pred EEEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCC
Q 001055 229 VAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 307 (1171)
Q Consensus 229 i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~ 307 (1171)
||||||+|++|++||+|||.+|.+ .+++++.++++.+++.+++..+|+|++|.+|++|.+|||||||||+|||||+++|
T Consensus 466 i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p 545 (1284)
T 3g5u_A 466 IGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNP 545 (1284)
T ss_dssp EEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCC
T ss_pred eEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999864 5678899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHHH
Q 001055 308 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 387 (1171)
Q Consensus 308 ~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 387 (1171)
+|||||||||+||+++++++.+.+.. ..+|+|+|+||||++++..||+|++|++|+++++|+++++++..+.|..+...
T Consensus 546 ~iliLDEpts~LD~~~~~~i~~~l~~-~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~ 624 (1284)
T 3g5u_A 546 KILLLDEATSALDTESEAVVQAALDK-AREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMT 624 (1284)
T ss_dssp SEEEEESTTCSSCHHHHHHHHHHHHH-HHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHTTSHHHHHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHH-HcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHH
Confidence 99999999999999999998886544 34689999999999999999999999999999999999999888888877654
Q ss_pred hchhhhhhhcccc---CccccCCC--CCCCCCCCCCCCCCccccccccccccchhhhhhh--hccccchHHHHHHHHHHh
Q 001055 388 AGKMEEYVEEKED---GETVDNKT--SKPAANGVDNDLPKEASDTRKTKEGKSVLIKQEE--RETGVVSFKVLSRYKDAL 460 (1171)
Q Consensus 388 ~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~l~~y~~~~ 460 (1171)
............. ........ ............... ................+. .......+..+.++....
T Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (1284)
T 3g5u_A 625 QTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTR-KSICGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTE 703 (1284)
T ss_dssp TC----------------------------------------------------------CCCCCSCCCTTHHHHHHHHT
T ss_pred hhhcccccccccccccccccccccccccccccccccccccc-cccccccccccccchhhhhhccccchHHHHHHHHhcch
Confidence 3221110000000 00000000 000000000000000 000000000000000000 001111122222222221
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHhhhhhh----cccccc--CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 461 GGLWVVLILLLCYFLTETLRVSSSTWLSYW----TDQSSL--KTHGPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAA 534 (1171)
Q Consensus 461 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~----~~~~~~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 534 (1171)
++.+++.+++.++...+....+.++..+ .+.... ......++..+|.++++...++.+++.++....+.+..
T Consensus 704 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~ 781 (1284)
T 3g5u_A 704 --WPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILT 781 (1284)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222222233333333333333333332 221110 01112345566777777888888899999999999999
Q ss_pred HHHHHHHHHHHHcCCccccc--cCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 001055 535 KRLHDAMLHSILRAPMVFFH--TNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTM---SLWAIM 609 (1171)
Q Consensus 535 ~~l~~~~~~~ll~~p~~~f~--~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 609 (1171)
.++|..++++++++|+.||+ ++++|++++|+++|+..++..+...+..++..+..++..++++++..+. ..++++
T Consensus 782 ~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~lv~l~~~ 861 (1284)
T 3g5u_A 782 KRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIV 861 (1284)
T ss_dssp HHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 99999999999999999999 5899999999999999999888777777766666655555544443332 222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 610 PLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLA 689 (1171)
Q Consensus 610 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1171)
|+++++...+. +..+..........+.....+.|+++|+++||+|+.++++.+.+.+..+...+..........+..
T Consensus 862 p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 938 (1284)
T 3g5u_A 862 PIIAIAGVVEM---KMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITF 938 (1284)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333222221 111111112222233445678999999999999999999988888777665544333222211111
Q ss_pred HHHHHHHHHHHHHHHHHHH--HhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 001055 690 IRLEIVGGLMIWLTATFAV--VQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSE 767 (1171)
Q Consensus 690 ~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e 767 (1171)
.....+..+...+..++.. ...+..+.... ..++.+......++..+............+.+|+.++++.+++
T Consensus 939 ~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~ 1013 (1284)
T 3g5u_A 939 SFTQAMMYFSYAAAFRFGAYLVTQQLMTFENV-----LLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPE 1013 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTH-----HHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCccHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 1111111111111111111 11111111111 1111111122222333322333345667889999999876654
Q ss_pred CCcccCCCCCCCCCCCCccEEEEeeEEEeCCC-CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEE
Q 001055 768 APLVIESNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846 (1171)
Q Consensus 768 ~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~-~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~ 846 (1171)
.....+. ..+.++..+.|+++||+|+|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.
T Consensus 1014 ~~~~~~~--~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~ 1091 (1284)
T 3g5u_A 1014 IDSYSTQ--GLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVF 1091 (1284)
T ss_dssp SSSCCSS--CCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEE
T ss_pred ccccccc--cccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence 3221111 11223446789999999999743 23699999999999999999999999999999999999999999999
Q ss_pred ECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCC
Q 001055 847 IDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGEN 923 (1171)
Q Consensus 847 i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~ 923 (1171)
+||+|++..+++.+|++|+||||+|.+|++||+|||.+.. ..++++++++++.++++++++++|.|++|.++++|.+
T Consensus 1092 i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~ 1171 (1284)
T 3g5u_A 1092 LDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQ 1171 (1284)
T ss_dssp SSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCS
T ss_pred ECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCc
Confidence 9999999999999999999999999999999999998654 3578899999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEec
Q 001055 924 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 924 LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g 1003 (1171)
|||||||||+|||||+++|+||||||||++||+++++.+++.|++..+++|+|+||||++++..||||+||++|+|++.|
T Consensus 1172 LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g 1251 (1284)
T 3g5u_A 1172 LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHG 1251 (1284)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEE
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999988899999999999999889999999999999999
Q ss_pred ChhHHhhcCCChHHHHHHhhc
Q 001055 1004 TPEELLSNEGSSFSKMVQSTG 1024 (1171)
Q Consensus 1004 ~~~el~~~~~~~~~~~~~~~~ 1024 (1171)
+|+|++++ ++.|++++..+.
T Consensus 1252 ~~~~l~~~-~g~y~~l~~~q~ 1271 (1284)
T 3g5u_A 1252 THQQLLAQ-KGIYFSMVSVQA 1271 (1284)
T ss_dssp CHHHHHHS-CSHHHHHHHHHC
T ss_pred CHHHHHhC-CCHHHHHHHHHh
Confidence 99999986 578998887643
No 3
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.3e-70 Score=731.87 Aligned_cols=512 Identities=20% Similarity=0.282 Sum_probs=412.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHH
Q 001055 504 YNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMF 583 (1171)
Q Consensus 504 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~ 583 (1171)
+.+.+.+++++..++.+++.+++.+.+.+...++|.++|+|++++|+.||+++++|++++|+++|++.++..+...+..+
T Consensus 138 ~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~ 217 (1321)
T 4f4c_A 138 VVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMA 217 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677778888999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHH
Q 001055 584 MGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRM 663 (1171)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~ 663 (1171)
+..++.++..++++++..+...++++.++++++++..++.+..++..+......+...+.+.|.++|+++||+|+.++++
T Consensus 218 ~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~ 297 (1321)
T 4f4c_A 218 FQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYE 297 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHH
Confidence 88888877777777766655444443333333333344444445555555555667788999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q 001055 664 ADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGL---MIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTA 740 (1171)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~ 740 (1171)
.+.+.+..+...+..........+......++..+ +++..+.+.+ ..+..+. ..+..++.+...+..++..
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v-~~g~lt~-----g~~~~~~~~~~~~~~~l~~ 371 (1321)
T 4f4c_A 298 LERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWV-HDGSLNF-----GDMLTTFSSVMMGSMALGL 371 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTSSCH-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCcH-----HHHHHHHHHHHHHHHHHHH
Confidence 88887776666555444333332222222222221 1111122222 2333221 2222233344445556666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCC-CCCcceeeeEEEcCCCEEEE
Q 001055 741 VLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGI 819 (1171)
Q Consensus 741 ~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~-~~~~l~~vs~~i~~Ge~v~i 819 (1171)
+......+.....+.+|+.++++.+++.+...+. .....+.+|.|+|+||+|+|++. ..++|+|+||+|+|||++||
T Consensus 372 ~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~--~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vai 449 (1321)
T 4f4c_A 372 AGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKA--GRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVAL 449 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSC--CCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccccc--cccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEE
Confidence 6666777888899999999999776553221111 12223456789999999999743 35799999999999999999
Q ss_pred ECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCCC-CCHHHHHHHHH
Q 001055 820 VGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALE 898 (1171)
Q Consensus 820 vG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~-~~~~~i~~~l~ 898 (1171)
|||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++||||||+|++|++||+|||.++.+ .++++++++++
T Consensus 450 vG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~ 529 (1321)
T 4f4c_A 450 VGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACK 529 (1321)
T ss_dssp EECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHH
T ss_pred EecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998754 68999999999
Q ss_pred HhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEE
Q 001055 899 RAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLII 978 (1171)
Q Consensus 899 ~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~v 978 (1171)
.++++++++.+|+|++|.++++|.+|||||||||+||||++++|+|||||||||+||+++++.++++|.++.+++|+|+|
T Consensus 530 ~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iii 609 (1321)
T 4f4c_A 530 MANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIII 609 (1321)
T ss_dssp HTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEE
T ss_pred HccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHhhc
Q 001055 979 AHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQSTG 1024 (1171)
Q Consensus 979 tH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~~ 1024 (1171)
|||++++..||+|+||++|+|++.|+|+||+++ ++.|++++..+.
T Consensus 610 aHrls~i~~aD~Iivl~~G~ive~Gth~eL~~~-~g~y~~l~~~q~ 654 (1321)
T 4f4c_A 610 AHRLSTIRNADLIISCKNGQVVEVGDHRALMAQ-QGLYYDLVTAQT 654 (1321)
T ss_dssp CSCTTTTTTCSEEEEEETTEEEEEECHHHHHTT-TCHHHHHHHHHH
T ss_pred cccHHHHHhCCEEEEeeCCeeeccCCHHHHHHh-hhHHHHHHHhhh
Confidence 999999999999999999999999999999986 578998887653
No 4
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=8.3e-70 Score=670.89 Aligned_cols=547 Identities=22% Similarity=0.330 Sum_probs=411.3
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 466 VLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHGP--LFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLH 543 (1171)
Q Consensus 466 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 543 (1171)
+++.+++.++...+....|.++..++|......... ..+..++.++.+...++.++..++....+.+...++|..+++
T Consensus 25 ~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~ 104 (587)
T 3qf4_A 25 AVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVALIGAVGGIGCTVFASYASQNFGADLRRDLFR 104 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666777778888888877543221111 122334445555667777888889999999999999999999
Q ss_pred HHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 544 SILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQ 623 (1171)
Q Consensus 544 ~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 623 (1171)
+++++|+.||+++++|++++|+++|++.++..+...+..++..++.++..+++++.+.+...++++.++++++....++.
T Consensus 105 ~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~ 184 (587)
T 3qf4_A 105 KVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLT 184 (587)
T ss_dssp HHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987777666666666655555555555544333333333333333333334
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Q 001055 624 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGL---MI 700 (1171)
Q Consensus 624 ~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~ 700 (1171)
+..++..+......+.+.+.+.|.++|+++||+|+.++.+.+.+.+..+...+..........+......++..+ ++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 264 (587)
T 3qf4_A 185 KKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGMIAV 264 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555667788999999999999999999998877777666655544333222222222222221111 11
Q ss_pred HHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCC
Q 001055 701 WLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPG 780 (1171)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~ 780 (1171)
+..+.+.+. .+..+ ...+..++.+...+..++..+......+.....+.+|+.++++.+++.+.. ..+.+.
T Consensus 265 l~~g~~~v~-~g~lt-----~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~---~~~~~~ 335 (587)
T 3qf4_A 265 LWFGGVLVR-NNQME-----IGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEA---DNALAL 335 (587)
T ss_dssp HHHHHHHHH-TTSSC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCC---TTCBCC
T ss_pred HHHHHHHHH-cCCcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCC---CCcccc
Confidence 111222222 22222 112222233333344455555556666778889999999998766543211 111111
Q ss_pred CCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH
Q 001055 781 WPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL 860 (1171)
Q Consensus 781 ~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~ 860 (1171)
++..+.|+++||+|+|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+++++.+++
T Consensus 336 ~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~ 415 (587)
T 3qf4_A 336 PNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDL 415 (587)
T ss_dssp SCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHH
T ss_pred CCCCCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHH
Confidence 23456799999999997555579999999999999999999999999999999999999999999999999999999999
Q ss_pred hhheEEEcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001055 861 RKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 939 (1171)
Q Consensus 861 r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 939 (1171)
|++|+||||+|.+|++||+||+.+.. ..++++++++++.++++++++.+|.|+++.+++.+.+||||||||++|||||+
T Consensus 416 r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~ 495 (587)
T 3qf4_A 416 RGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALV 495 (587)
T ss_dssp HHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHH
T ss_pred HhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999998765 35788999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHH
Q 001055 940 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1019 (1171)
Q Consensus 940 ~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~ 1019 (1171)
++|+|||||||||+||+++++.+++.|++..+++|+|+||||++++..||||++|++|+|++.|+|+|++++ .+.|.++
T Consensus 496 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~-~~~~~~~ 574 (587)
T 3qf4_A 496 KKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEH-CKPYREI 574 (587)
T ss_dssp TCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHH-CHHHHHH
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHH
Confidence 999999999999999999999999999998889999999999999989999999999999999999999976 3456666
Q ss_pred HHh
Q 001055 1020 VQS 1022 (1171)
Q Consensus 1020 ~~~ 1022 (1171)
+..
T Consensus 575 ~~~ 577 (587)
T 3qf4_A 575 YES 577 (587)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 5
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-69 Score=671.92 Aligned_cols=547 Identities=25% Similarity=0.365 Sum_probs=429.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhhhhhccccccCCC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 464 WVVLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTH--GPLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAM 541 (1171)
Q Consensus 464 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 541 (1171)
+.+++.+++.++...+....|.++..++|....... ....+..++.++.+...++.+++.++....+.+...++|..+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l 116 (598)
T 3qf4_B 37 FTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKEL 116 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666667777777777777665432211 122344456666677788888999999999999999999999
Q ss_pred HHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 542 LHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLY 621 (1171)
Q Consensus 542 ~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 621 (1171)
+++++++|+.||+++++|++++|+++|++.++..+...+..++..++.++..++++++..+...++++.++++++.+..+
T Consensus 117 ~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~ 196 (598)
T 3qf4_B 117 FEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQI 196 (598)
T ss_dssp HHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888777777777777777666666666665555444444444444455
Q ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 001055 622 YQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLM-- 699 (1171)
Q Consensus 622 ~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-- 699 (1171)
+.+..++..+......+++.+.+.|.++|+++||+|+.++++.+.+.+..+...+..........+......++..+.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (598)
T 3qf4_B 197 VSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFA 276 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555666666778889999999999999999999998888877766655544443333333333333322221
Q ss_pred -HHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCC
Q 001055 700 -IWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPP 778 (1171)
Q Consensus 700 -~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~ 778 (1171)
++..+.+.+. .+..+ ...+..++.+...+..++..+...+..++....+++|+.++++.+++.+. ....
T Consensus 277 ~~~~~g~~l~~-~g~ls-----~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~----~~~~ 346 (598)
T 3qf4_B 277 LISGFGGWLAL-KDIIT-----VGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDD----PDAV 346 (598)
T ss_dssp HHHHHHHHHGG-GTSSC-----HHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCC----SSCC
T ss_pred HHHHHHHHHHH-cCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC----CCCC
Confidence 1112222222 22221 12223333344445566677777777888899999999999987765321 1111
Q ss_pred CCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChH
Q 001055 779 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM 858 (1171)
Q Consensus 779 ~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~ 858 (1171)
+.++..+.|+++||+|+|+++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+.+++.+
T Consensus 347 ~~~~~~~~i~~~~v~~~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~ 425 (598)
T 3qf4_B 347 ELREVRGEIEFKNVWFSYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRS 425 (598)
T ss_dssp CCCSCCCCEEEEEEECCSSSS-SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHH
T ss_pred CCCCCCCeEEEEEEEEECCCC-CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHH
Confidence 223445789999999999754 4799999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 937 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 937 (1171)
.+|++||||||+|.+|++||+||+.+..+ .++++++++++.++++++++++|.|++|.+++.|.+||||||||++||||
T Consensus 426 ~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAra 505 (598)
T 3qf4_B 426 SLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRA 505 (598)
T ss_dssp HHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999987643 56788999999999999999999999999999999999999999999999
Q ss_pred hccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHH
Q 001055 938 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFS 1017 (1171)
Q Consensus 938 ll~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 1017 (1171)
|+++|+|||||||||+||+.+++.+++.|++..+++|+|+||||++++..||+|++|++|+|++.|+|+|++++ .+.|.
T Consensus 506 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~ 584 (598)
T 3qf4_B 506 FLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK-RGFYY 584 (598)
T ss_dssp HHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHT-TCHHH
T ss_pred HhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC-CCHHH
Confidence 99999999999999999999999999999998889999999999999999999999999999999999999976 45777
Q ss_pred HHHHh
Q 001055 1018 KMVQS 1022 (1171)
Q Consensus 1018 ~~~~~ 1022 (1171)
+++..
T Consensus 585 ~~~~~ 589 (598)
T 3qf4_B 585 ELFTS 589 (598)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66653
No 6
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=7e-68 Score=654.71 Aligned_cols=544 Identities=22% Similarity=0.333 Sum_probs=422.8
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhhhccccccCCC-CchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 467 LILLLCYFLTETLRVSSSTWLSYWTDQSSLKTH-GPLFYN-TIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHS 544 (1171)
Q Consensus 467 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~-~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 544 (1171)
++.+++.++...+....+.++..++|....... ....+. .++.++.++..++.++..++....+.+...++|.+++++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 107 (582)
T 3b5x_A 28 VVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNH 107 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455556666666666666654321111 111222 224455566777888888999999999999999999999
Q ss_pred HHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 545 ILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQS 624 (1171)
Q Consensus 545 ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 624 (1171)
++++|+.||+++++|++++|+++|++.++..+...+..++..++.++..+++++++.+...++++.++++++.....+.+
T Consensus 108 ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~ 187 (582)
T 3b5x_A 108 FMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSK 187 (582)
T ss_pred HHcCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887777777777777777666666666665544444444444444444555
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Q 001055 625 TAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMI---W 701 (1171)
Q Consensus 625 ~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~ 701 (1171)
..++..+......+++.+.+.|.++|+++||+|+.++++.+.+.+..+...+..........+......++..+.. +
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 267 (582)
T 3b5x_A 188 RFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVL 267 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555566677888999999999999999999999988888877777666655554444454444443332222 2
Q ss_pred HHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCC
Q 001055 702 LTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGW 781 (1171)
Q Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~ 781 (1171)
+.+.+.+.. +..+ ...+..++.+...+..++..+............+.+|+.++++.+++.+. .. .+.+
T Consensus 268 ~~g~~~v~~-g~lt-----~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~--~~~~ 336 (582)
T 3b5x_A 268 FLASVDSIR-AELT-----PGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDN---GK--YEAE 336 (582)
T ss_pred HHHHHHHHc-CCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC---CC--CCCC
Confidence 222222222 2221 22333344444555666666777777788889999999999876654321 11 1112
Q ss_pred CCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHh
Q 001055 782 PSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 861 (1171)
Q Consensus 782 ~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r 861 (1171)
+..+.|+++||+|+|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+.+.+...+|
T Consensus 337 ~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~ 416 (582)
T 3b5x_A 337 RVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLR 416 (582)
T ss_pred CCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHh
Confidence 23467999999999975324799999999999999999999999999999999999999999999999999999999999
Q ss_pred hheEEEcCCcccccccHHhhccCCC--CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001055 862 KILGIIPQSPVLFSGTVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 939 (1171)
Q Consensus 862 ~~i~~v~Q~~~lf~~tv~~nl~~~~--~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 939 (1171)
++||||||+|.+|++||+||+.+.. ..++++++++++.++++++++++|+|++|.+++++.+||||||||++|||||+
T Consensus 417 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~ 496 (582)
T 3b5x_A 417 RHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALL 496 (582)
T ss_pred cCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998754 45788899999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHH
Q 001055 940 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1019 (1171)
Q Consensus 940 ~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~ 1019 (1171)
++|+|||||||||+||+.+++.+++.|++..+++|+|+||||++++..||+|++|++|++++.|+|+|+++. .+.|.++
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~ 575 (582)
T 3b5x_A 497 RDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQ-DGAYAQL 575 (582)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHH
Confidence 999999999999999999999999999998789999999999999988999999999999999999999875 4567766
Q ss_pred HHh
Q 001055 1020 VQS 1022 (1171)
Q Consensus 1020 ~~~ 1022 (1171)
+..
T Consensus 576 ~~~ 578 (582)
T 3b5x_A 576 HRI 578 (582)
T ss_pred HHH
Confidence 653
No 7
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=6.1e-68 Score=655.26 Aligned_cols=546 Identities=22% Similarity=0.302 Sum_probs=426.2
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhhhccccccCCCC-chHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 466 VLILLLCYFLTETLRVSSSTWLSYWTDQSSLKTHG-PLFYN-TIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLH 543 (1171)
Q Consensus 466 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~-~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 543 (1171)
+++.+++.++...+....+.++..++|........ ...+. .++.++.++..++.+++.++....+.+...++|.++++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~ 106 (582)
T 3b60_A 27 LIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFG 106 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455556666667777777777654321111 11111 22444556677788888889999999999999999999
Q ss_pred HHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 544 SILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQ 623 (1171)
Q Consensus 544 ~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 623 (1171)
+++++|+.||+++++|++++|+++|++.++..+...+..++..++.++..+++++++.+...++++.++++++.....+.
T Consensus 107 ~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~ 186 (582)
T 3b60_A 107 HMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVS 186 (582)
T ss_dssp HHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988777777777777777666666666655444443333333334444455
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 624 STAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLMIWLT 703 (1171)
Q Consensus 624 ~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 703 (1171)
+..++..+......+++.+.+.|.++|+++||+|+.++++.+.+.+..+...+..........+......++..+...++
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (582)
T 3b60_A 187 KRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFV 266 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555566677888999999999999999999999998888887777766666555555555555544443333222
Q ss_pred HHHHHH--hcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCC
Q 001055 704 ATFAVV--QNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGW 781 (1171)
Q Consensus 704 ~~~~~~--~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~ 781 (1171)
.++... ..+.. -...+..++.+...+..++..+...+........+++|+.++++.+++.+. .. .+.+
T Consensus 267 ~~~g~~~v~~g~l-----t~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~---~~--~~~~ 336 (582)
T 3b60_A 267 LYAASFPSVMDSL-----TAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDE---GK--RVID 336 (582)
T ss_dssp HHHHHSSSTTSSS-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCC---CC--BCCS
T ss_pred HHHHHHHHHcCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC---CC--CCCC
Confidence 222211 11111 122333344445555666666777777788889999999999987655321 11 1112
Q ss_pred CCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHh
Q 001055 782 PSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 861 (1171)
Q Consensus 782 ~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r 861 (1171)
+..+.|+++||+|+|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+.+.+..++|
T Consensus 337 ~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~ 416 (582)
T 3b60_A 337 RATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR 416 (582)
T ss_dssp CCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHH
T ss_pred CCCCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHH
Confidence 23467999999999974324799999999999999999999999999999999999999999999999999999999999
Q ss_pred hheEEEcCCcccccccHHhhccCCC--CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001055 862 KILGIIPQSPVLFSGTVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 939 (1171)
Q Consensus 862 ~~i~~v~Q~~~lf~~tv~~nl~~~~--~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 939 (1171)
++|+||||+|.+|++||+||+.+.. ..++++++++++.++++++++++|.|++|.+++.+.+||||||||++|||||+
T Consensus 417 ~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~ 496 (582)
T 3b60_A 417 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL 496 (582)
T ss_dssp HTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred hhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998754 45788899999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHH
Q 001055 940 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1019 (1171)
Q Consensus 940 ~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~ 1019 (1171)
++|+|||||||||+||+.+++.+++.|++..+++|+|+||||++++..||+|++|++|++++.|+|+|+++. ++.|.++
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~ 575 (582)
T 3b60_A 497 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYAQL 575 (582)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH-TSSHHHH
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHHHH
Confidence 999999999999999999999999999998789999999999999988999999999999999999999876 4567776
Q ss_pred HHh
Q 001055 1020 VQS 1022 (1171)
Q Consensus 1020 ~~~ 1022 (1171)
+..
T Consensus 576 ~~~ 578 (582)
T 3b60_A 576 HKM 578 (582)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 8
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=9.4e-69 Score=661.43 Aligned_cols=544 Identities=21% Similarity=0.319 Sum_probs=407.5
Q ss_pred HHHHHHHHHHHHHHhHHhhhhhhccccccCCC----Cc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 468 ILLLCYFLTETLRVSSSTWLSYWTDQSSLKTH----GP-----LFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLH 538 (1171)
Q Consensus 468 ~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~----~~-----~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 538 (1171)
+.+++.++...+....|..+...+|....... .. ..+..++.++.+...++.+++.++....+.+...++|
T Consensus 18 ~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 97 (578)
T 4a82_A 18 ATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIR 97 (578)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555556666555554322111 01 1122233344455667778888999999999999999
Q ss_pred HHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 539 DAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAA 618 (1171)
Q Consensus 539 ~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 618 (1171)
.+++++++++|+.||+++++|++++|+++|++.++..+...+..++..++.++..+++++.+.+...++.+.++++++..
T Consensus 98 ~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~ 177 (578)
T 4a82_A 98 KKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILT 177 (578)
T ss_dssp HHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHHHTTHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998765554444555555555555555555444333333333333333
Q ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 001055 619 YLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVG-- 696 (1171)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 696 (1171)
...+.+..++..+......+++.+.+.|.++|+++||+|+.++.+.+.+.+..+...+..........+.......+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (578)
T 4a82_A 178 VYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDI 257 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555556666778889999999999999999999988877776665554443333222222222222221
Q ss_pred -HHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCC
Q 001055 697 -GLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESN 775 (1171)
Q Consensus 697 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~ 775 (1171)
.++++..+.+.+.. +..+ ...+..++.+...+..++..+............+.+|+.++++.+++.+.. .
T Consensus 258 ~~~~v~~~g~~~v~~-g~lt-----~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~---~ 328 (578)
T 4a82_A 258 GPIIVIGVGAYLAIS-GSIT-----VGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNG---V 328 (578)
T ss_dssp HHHHHHHHHHHHHHH-TSCC-----HHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCC---T
T ss_pred HHHHHHHHHHHHHHc-CCcC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC---C
Confidence 12222222232322 2222 122333344444555666666777777888899999999999776543211 1
Q ss_pred CCCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCC
Q 001055 776 RPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF 855 (1171)
Q Consensus 776 ~~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~ 855 (1171)
...+.++..+.|+++||+|+|++..+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+++.
T Consensus 329 ~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~ 408 (578)
T 4a82_A 329 GAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDF 408 (578)
T ss_dssp TCCCCCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGS
T ss_pred CccccCCCCCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhC
Confidence 11112234567999999999976545799999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHhhheEEEcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001055 856 GLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 934 (1171)
Q Consensus 856 ~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~l 934 (1171)
+.+++|++||||||+|.+|++||+||+.+.. ..+++++.++++.++++++++++|.|++|.++++|.+||||||||++|
T Consensus 409 ~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~l 488 (578)
T 4a82_A 409 LTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSI 488 (578)
T ss_dssp CHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHH
T ss_pred CHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHH
Confidence 9999999999999999999999999998654 457888999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCC
Q 001055 935 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGS 1014 (1171)
Q Consensus 935 Arall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~ 1014 (1171)
||||+++|+|||||||||+||+++++.+.+.|++..+++|+|+||||++++..||||++|++|+|++.|+|+|+++. ++
T Consensus 489 Aral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~~-~~ 567 (578)
T 4a82_A 489 ARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QG 567 (578)
T ss_dssp HHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT-TS
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC-Cc
Confidence 99999999999999999999999999999999998889999999999999988999999999999999999999976 35
Q ss_pred hHHHHHH
Q 001055 1015 SFSKMVQ 1021 (1171)
Q Consensus 1015 ~~~~~~~ 1021 (1171)
.|.+++.
T Consensus 568 ~~~~~~~ 574 (578)
T 4a82_A 568 AYEHLYS 574 (578)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 6766654
No 9
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.1e-67 Score=654.48 Aligned_cols=547 Identities=22% Similarity=0.309 Sum_probs=406.2
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhhhccccccCCC-C----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 467 LILLLCYFLTETLRVSSSTWLSYWTDQSSLKTH-G----PLFYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAM 541 (1171)
Q Consensus 467 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~-~----~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 541 (1171)
++.+++.++...+....+.++..++|....... . ...+..++.++.+...++.+++.++....+.+...++|.++
T Consensus 22 ~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l 101 (595)
T 2yl4_A 22 AAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSL 101 (595)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555556666666666554221110 1 11122334444555667778888888899999999999999
Q ss_pred HHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 542 LHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLY 621 (1171)
Q Consensus 542 ~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 621 (1171)
+++++++|+.||+++++|++++|+++|++.++..+...+..++..++.++..+++++++.+...++++.++++++.+...
T Consensus 102 ~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~ 181 (595)
T 2yl4_A 102 FSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVI 181 (595)
T ss_dssp HHHHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887777777777777766666666665554443333333333333344
Q ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 001055 622 YQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDKNIRYTLVNMGANRWLAIRLEIVGGLM-- 699 (1171)
Q Consensus 622 ~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-- 699 (1171)
+.+..++..+......+.+.+.+.|.++|+++||+|+.++++.+.+.+..+...+..........+......++..+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (595)
T 2yl4_A 182 YGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIVL 261 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555556667888999999999999999999988888877777665555444444444433333332222
Q ss_pred -HHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCC
Q 001055 700 -IWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPP 778 (1171)
Q Consensus 700 -~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~ 778 (1171)
+++.+.+.+. .+..+ ...+..++.+...+..++..+............+.+|+.++++.+++.+.. ... .
T Consensus 262 ~~~~~g~~~v~-~g~lt-----~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~--~~~-~ 332 (595)
T 2yl4_A 262 SVLYKGGLLMG-SAHMT-----VGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFN--EGV-I 332 (595)
T ss_dssp HHHHHHHHHHH-TTSCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSS--CSB-C
T ss_pred HHHHHHHHHHH-cCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCC--CCC-C
Confidence 1122222222 22222 122333344444556666666777777788889999999998766543211 111 1
Q ss_pred CCCCCCcc-EEEEeeEEEeCCC-CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCC
Q 001055 779 PGWPSSGS-IKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG 856 (1171)
Q Consensus 779 ~~~~~~g~-i~~~~vs~~y~~~-~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~ 856 (1171)
+..+..+. |+++||+|+|+++ ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+.+.+
T Consensus 333 ~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~ 412 (595)
T 2yl4_A 333 LNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLN 412 (595)
T ss_dssp CCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBC
T ss_pred CCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCC
Confidence 11123467 9999999999753 236999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhheEEEcCCcccccccHHhhccCCCC----CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001055 857 LMDLRKILGIIPQSPVLFSGTVRFNLDPFSE----HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 932 (1171)
Q Consensus 857 ~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~----~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl 932 (1171)
+..+|++|+||||+|.+|++||+||+.+..+ .++++++++++.++++++++++|.|+++.+++.|.+|||||||||
T Consensus 413 ~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv 492 (595)
T 2yl4_A 413 PVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRI 492 (595)
T ss_dssp HHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHH
T ss_pred HHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHH
Confidence 9999999999999999999999999976533 467889999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcC
Q 001055 933 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNE 1012 (1171)
Q Consensus 933 ~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~ 1012 (1171)
+|||||+++|+|||||||||+||+++++.+++.|++..+++|+|+||||++++..||+|++|++|++++.|+|+|++++.
T Consensus 493 ~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 572 (595)
T 2yl4_A 493 AIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKP 572 (595)
T ss_dssp HHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSCC-----
T ss_pred HHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCC
Confidence 99999999999999999999999999999999999987899999999999999889999999999999999999998765
Q ss_pred CChHHHHHHh
Q 001055 1013 GSSFSKMVQS 1022 (1171)
Q Consensus 1013 ~~~~~~~~~~ 1022 (1171)
++.|.+++..
T Consensus 573 ~~~~~~~~~~ 582 (595)
T 2yl4_A 573 NGIYRKLMNK 582 (595)
T ss_dssp -C--------
T ss_pred ChHHHHHHHH
Confidence 6677776654
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.5e-66 Score=691.15 Aligned_cols=511 Identities=20% Similarity=0.308 Sum_probs=402.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCChhHHHHHHHhhhhhhhhhhHHHHHH
Q 001055 503 FYNTIYSLLSFGQVLVTLANSYWLIISSLYAAKRLHDAMLHSILRAPMVFFHTNPLGRIINRFAKDLGDIDRNVAVFVNM 582 (1171)
Q Consensus 503 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~p~~~f~~~~~G~ii~r~s~Di~~id~~~~~~~~~ 582 (1171)
.+..+|.+++++..++.+++.++....+.+...++|.++|++++++|+.||+++++|++++|+++|++.++..+...+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~ 188 (1284)
T 3g5u_A 109 TYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGM 188 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777788888889999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHccHHHHHHhhhHHH
Q 001055 583 FMGQVSQLLSTFVLIGIVSTMSLWAIMPLLLLFYAAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDR 662 (1171)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~e~l~g~~~ira~~~~~~ 662 (1171)
++..++.++..++++++..+...+++++++++++....++.+..++..+......++..+++.|+++|+++||+|+.+++
T Consensus 189 ~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~ 268 (1284)
T 3g5u_A 189 FFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKK 268 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHH
Confidence 88877777777766666655444444444444444444555555555555666677888899999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHH
Q 001055 663 MADINGKSMDKNIRYTLVNMGANRWLAIRLE----IVGGLMIWLTATFAVVQNGSAENQEAFASTMGLLLSYALNITSLL 738 (1171)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 738 (1171)
+.+.+.+..+...+..........+...... ....+.+|+++.+. ..+ ..+....+. ++.+......++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv-~~g-~~~~g~~~~-----~~~~~~~~~~~~ 341 (1284)
T 3g5u_A 269 ELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLV-ISK-EYSIGQVLT-----VFFSVLIGAFSV 341 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHS-SSCSSCHHH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcC-CCCHHHHHH-----HHHHHHHHHHHH
Confidence 8877777766665544332222222222211 12222233332222 222 221111111 111112223344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCC-CCCcceeeeEEEcCCCEE
Q 001055 739 TAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFTIPPSDKV 817 (1171)
Q Consensus 739 ~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~-~~~~l~~vs~~i~~Ge~v 817 (1171)
..+...+..+.....+++|+.++++.+++.+...+... ...+..|.|+++||+|+|+++ ..++|+|+||+|++||++
T Consensus 342 ~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~--~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~ 419 (1284)
T 3g5u_A 342 GQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGH--KPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTV 419 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCC--CCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcccccCC--CCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEE
Confidence 45555566677888999999999876654322111111 112345789999999999753 247999999999999999
Q ss_pred EEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCC-CCCHHHHHHH
Q 001055 818 GIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEA 896 (1171)
Q Consensus 818 ~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~ 896 (1171)
|||||||||||||+++|+|+++|++|+|.+||+|++.++++++|++||||||+|.+|++||+|||.+.. +.++++++++
T Consensus 420 ~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~ 499 (1284)
T 3g5u_A 420 ALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKA 499 (1284)
T ss_dssp EEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998654 4678999999
Q ss_pred HHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEE
Q 001055 897 LERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTML 976 (1171)
Q Consensus 897 l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi 976 (1171)
++.++++++++++|.|++|.+++.|.+|||||||||+|||||+++|+|||||||||+||+++++.+++.|+...+++|+|
T Consensus 500 ~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i 579 (1284)
T 3g5u_A 500 VKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTI 579 (1284)
T ss_dssp HHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEE
T ss_pred HHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888899999
Q ss_pred EEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHhh
Q 001055 977 IIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 1023 (1171)
Q Consensus 977 ~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~ 1023 (1171)
+||||++++..||+|+||++|+|++.|+|+|+++. .+.|.+++...
T Consensus 580 ~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~ 625 (1284)
T 3g5u_A 580 VIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMRE-KGIYFKLVMTQ 625 (1284)
T ss_dssp EECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHT-TSHHHHHHHHT
T ss_pred EEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHh
Confidence 99999999999999999999999999999999986 45777776543
No 11
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=4.9e-64 Score=633.18 Aligned_cols=194 Identities=18% Similarity=0.241 Sum_probs=156.7
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhc-CCCCCCCccceecCcEEEEecCC-CC-
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG-ELPPVSDASAVIRGTVAYVPQVS-WI- 238 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G-~~~~~~g~~~~~~~~i~~v~Q~~-~l- 238 (1171)
.+...|++++|+ ++++|+|+||++++|++++|+||||||||||+++|+| .+. |.......+++|++|++ .+
T Consensus 435 ~L~~~~ls~~yg---~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~---g~~~~~~~~~~~v~q~~~~~~ 508 (986)
T 2iw3_A 435 DLCNCEFSLAYG---AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVD---GFPTQEECRTVYVEHDIDGTH 508 (986)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCST---TCCCTTTSCEEETTCCCCCCC
T ss_pred eeEEeeEEEEEC---CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC---CCccccceeEEEEcccccccc
Confidence 577779999996 3579999999999999999999999999999999994 331 11111112478999985 34
Q ss_pred CcccHHHHHhcCCCCCHHHHHHHHHHcCch-HHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCC
Q 001055 239 FNATVRDNILFGSAFEPARYEKAIDVTSLQ-HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS 317 (1171)
Q Consensus 239 ~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts 317 (1171)
...||.||+.+......+++.+.++..++. +..+.. ..+||||||||++|||||+.+|++|||||||+
T Consensus 509 ~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~-----------~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs 577 (986)
T 2iw3_A 509 SDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMP-----------ISALSGGWKMKLALARAVLRNADILLLDEPTN 577 (986)
T ss_dssp TTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSB-----------GGGCCHHHHHHHHHHHHHHTTCSEEEEESTTT
T ss_pred cCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCC-----------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 467999999862111156677788888874 344432 25899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEE-EecChhHHh
Q 001055 318 ALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVK-EEGTFEDLS 375 (1171)
Q Consensus 318 ~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~-~~g~~~~l~ 375 (1171)
|||+.+++++++.+.. .|+|+|+||||++++.. ||+|++|++|+++ +.|+++++.
T Consensus 578 ~LD~~~~~~l~~~L~~---~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~ 634 (986)
T 2iw3_A 578 HLDTVNVAWLVNYLNT---CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFV 634 (986)
T ss_dssp TCCHHHHHHHHHHHHH---SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHH
T ss_pred CCCHHHHHHHHHHHHh---CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHH
Confidence 9999999999997765 58999999999999975 7999999999996 588887664
No 12
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=2.6e-65 Score=627.71 Aligned_cols=201 Identities=24% Similarity=0.330 Sum_probs=166.7
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++ .+||
T Consensus 357 ~l~~~~l~~~~~~---~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-------------~~i~ 420 (607)
T 3bk7_A 357 LVEYPRLVKDYGS---FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------LTVA 420 (607)
T ss_dssp EEEECCEEEECSS---CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-------------CCEE
T ss_pred EEEEeceEEEecc---eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-------------eEEE
Confidence 5899999999964 37999999999999999999999999999999999999999999762 3699
Q ss_pred EEcCCccc-ccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001055 866 IIPQSPVL-FSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 944 (1171)
Q Consensus 866 ~v~Q~~~l-f~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 944 (1171)
|+||++.+ +..||.+|+..... ... -....+.+.++.+ |+....+....+|||||||||+|||||+.+|+|
T Consensus 421 ~v~Q~~~~~~~~tv~e~~~~~~~---~~~---~~~~~~~~~l~~~--~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~l 492 (607)
T 3bk7_A 421 YKPQYIKAEYEGTVYELLSKIDS---SKL---NSNFYKTELLKPL--GIIDLYDRNVEDLSGGELQRVAIAATLLRDADI 492 (607)
T ss_dssp EECSSCCCCCSSBHHHHHHHHHH---HHH---HCHHHHHHTHHHH--TCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSE
T ss_pred EEecCccCCCCCcHHHHHHhhhc---cCC---CHHHHHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 99999865 46699988753200 000 0011123334433 455555666778999999999999999999999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeC--cEEEEecChhHHhh
Q 001055 945 LVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDS--GRVLEYDTPEELLS 1010 (1171)
Q Consensus 945 LlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~--G~i~~~g~~~el~~ 1010 (1171)
|||||||++||+.++..+++.|+++. .++|||+||||++++.. ||||++|++ |++...|+|++++.
T Consensus 493 LlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 493 YLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 99999999999999999999999874 48999999999999987 999999986 88888999998874
No 13
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=2.2e-65 Score=622.69 Aligned_cols=201 Identities=24% Similarity=0.333 Sum_probs=166.7
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++ ..|+
T Consensus 287 ~l~~~~l~~~~~~---~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-------------~~i~ 350 (538)
T 1yqt_A 287 LVTYPRLVKDYGS---FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-------------LTVA 350 (538)
T ss_dssp EEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-------------CCEE
T ss_pred EEEEeeEEEEECC---EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-------------ceEE
Confidence 4899999999964 37999999999999999999999999999999999999999999851 3699
Q ss_pred EEcCCccc-ccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001055 866 IIPQSPVL-FSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 944 (1171)
Q Consensus 866 ~v~Q~~~l-f~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 944 (1171)
|+||++.. +..||.+++..... ... .....+.+.++. .|+....+....+|||||||||+|||||+.+|+|
T Consensus 351 ~v~Q~~~~~~~~tv~~~~~~~~~---~~~---~~~~~~~~~l~~--~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~l 422 (538)
T 1yqt_A 351 YKPQYIKADYEGTVYELLSKIDA---SKL---NSNFYKTELLKP--LGIIDLYDREVNELSGGELQRVAIAATLLRDADI 422 (538)
T ss_dssp EECSSCCCCCSSBHHHHHHHHHH---HHH---TCHHHHHHTTTT--TTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSE
T ss_pred EEecCCcCCCCCcHHHHHHhhhc---cCC---CHHHHHHHHHHH--cCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 99999876 45699888743100 000 000112333333 3565666777789999999999999999999999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeC--cEEEEecChhHHhh
Q 001055 945 LVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDS--GRVLEYDTPEELLS 1010 (1171)
Q Consensus 945 LlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~--G~i~~~g~~~el~~ 1010 (1171)
|||||||+|||+.++..+++.|+++. .++|||+||||++++.. ||||++|++ |+++..|+|++++.
T Consensus 423 LlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 423 YLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 99999999999999999999999874 38999999999999987 999999986 78888999988764
No 14
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.7e-62 Score=593.62 Aligned_cols=198 Identities=23% Similarity=0.322 Sum_probs=164.2
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++| ..++
T Consensus 269 ~l~~~~l~~~~~~---~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i~ 333 (538)
T 3ozx_A 269 KMKWTKIIKKLGD---FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QILS 333 (538)
T ss_dssp EEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCEE
T ss_pred eEEEcceEEEECC---EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eeeE
Confidence 4899999999964 468889999999999999999999999999999999999999999765 3589
Q ss_pred EEcCCccc-ccccHHhhccCCCC----CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 866 IIPQSPVL-FSGTVRFNLDPFSE----HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 866 ~v~Q~~~l-f~~tv~~nl~~~~~----~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
|+||++.. +..||++|+..... .....+.++++. .++....+....+|||||||||+|||||+.
T Consensus 334 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~-----------~~l~~~~~~~~~~LSGGq~QRv~iAraL~~ 402 (538)
T 3ozx_A 334 YKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKR-----------LNLHRLLESNVNDLSGGELQKLYIAATLAK 402 (538)
T ss_dssp EECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTT-----------TTGGGCTTSBGGGCCHHHHHHHHHHHHHHS
T ss_pred eechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHH-----------cCCHHHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 99999864 46799999853211 111222333333 345555666678899999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeC--cEEEEecChhHHh
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDS--GRVLEYDTPEELL 1009 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~--G~i~~~g~~~el~ 1009 (1171)
+|+||||||||++||+.++..+++.|+++. .++|||+||||++++.. ||||++|++ |.+...++|.++.
T Consensus 403 ~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 403 EADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 999999999999999999999999999875 47899999999999987 999999986 5666667776654
No 15
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=2.9e-62 Score=614.55 Aligned_cols=197 Identities=24% Similarity=0.310 Sum_probs=126.8
Q ss_pred CCCceeeeeEEecCCCEEEEEcCCCccHHHHH---------------------HHHhcCCCCCCCccc------e-----
Q 001055 177 ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLI---------------------SAMLGELPPVSDASA------V----- 224 (1171)
Q Consensus 177 ~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl---------------------~~l~G~~~~~~g~~~------~----- 224 (1171)
.+++|+||||+|++||++||+||||||||||+ +++.|+..|+.|.+. .
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 35799999999999999999999999999998 888888888743211 0
Q ss_pred ----ecCcEEEEecCCCC--------------------CcccHHHHHhcCCCCC--H--HHHHHHHHHcCchH---HHhc
Q 001055 225 ----IRGTVAYVPQVSWI--------------------FNATVRDNILFGSAFE--P--ARYEKAIDVTSLQH---DLDL 273 (1171)
Q Consensus 225 ----~~~~i~~v~Q~~~l--------------------~~~Tv~eni~~g~~~~--~--~~~~~~~~~~~l~~---~~~~ 273 (1171)
.+..+++++|.+.+ ...||+||+.+..... . .+..+. ....+.+ .++.
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARL-ILREIRDRLGFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHH
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHH-HHHHHHHHHHHHHH
Confidence 11234555554322 2469999998742111 0 000000 0000111 1221
Q ss_pred CCCCCccccCCCCCccChHHHHHHHHHHHhccCCC--EEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchh
Q 001055 274 LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD--VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFL 351 (1171)
Q Consensus 274 ~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~--vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l 351 (1171)
+.-.+ ...+....+|||||||||+|||||+.+|+ +|||||||+|||+..+.++++.+.+...+|.|+|+||||++++
T Consensus 189 ~gL~~-~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~ 267 (670)
T 3ux8_A 189 VGLDY-LTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTM 267 (670)
T ss_dssp TTCTT-CCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHH
T ss_pred cCCch-hhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 11100 01234457899999999999999999998 9999999999999999999998877666799999999999998
Q ss_pred hhcCEEEEE------eCCEEEEecChhHHh
Q 001055 352 SQVDRIILV------HEGMVKEEGTFEDLS 375 (1171)
Q Consensus 352 ~~~d~i~~l------~~G~i~~~g~~~~l~ 375 (1171)
..||+|++| ++|+++++|+++++.
T Consensus 268 ~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 268 LAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp HHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred hhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 889999999 899999999887764
No 16
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-61 Score=590.40 Aligned_cols=197 Identities=19% Similarity=0.292 Sum_probs=161.6
Q ss_pred EeeEEEeCCCCCCcceeeeEEEcCC-----CEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhhe
Q 001055 790 EDVVLRYRPELPPVLHGLSFTIPPS-----DKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 864 (1171)
Q Consensus 790 ~~vs~~y~~~~~~~l~~vs~~i~~G-----e~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 864 (1171)
++++++|+.. ..+++|+||++.+| |++||+||||||||||+++|+|+++|++|+. +. +..+
T Consensus 350 ~~~~~~y~~~-~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~i 415 (608)
T 3j16_B 350 ASRAFSYPSL-KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLNV 415 (608)
T ss_dssp SSSCCEECCE-EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCCE
T ss_pred cceeEEecCc-ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCcE
Confidence 4667888643 25899999999998 8899999999999999999999999999972 21 2469
Q ss_pred EEEcCCcc-cccccHHhhccC--CCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 865 GIIPQSPV-LFSGTVRFNLDP--FSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 865 ~~v~Q~~~-lf~~tv~~nl~~--~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
+|+||+.. .|..|+++|+.. ... .......++++.. ++....+....+|||||||||+|||||+.
T Consensus 416 ~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l-----------~l~~~~~~~~~~LSGGqkQRv~iAraL~~ 484 (608)
T 3j16_B 416 SMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPL-----------RIDDIIDQEVQHLSGGELQRVAIVLALGI 484 (608)
T ss_dssp EEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHH-----------TSTTTSSSBSSSCCHHHHHHHHHHHHTTS
T ss_pred EEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHc-----------CChhhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 99999975 457799998742 111 1233333334333 34445566678899999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeC--cEEEEecChhHHhhc
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDS--GRVLEYDTPEELLSN 1011 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~--G~i~~~g~~~el~~~ 1011 (1171)
+|+||||||||+|||+.+...+.+.|+++. .++|||+||||++++.. ||||++|++ |+++..|+|++++..
T Consensus 485 ~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 485 PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp CCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 999999999999999999999999999864 48999999999999987 999999996 999999999999863
No 17
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.5e-57 Score=561.54 Aligned_cols=381 Identities=26% Similarity=0.378 Sum_probs=326.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 4 VQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPV 83 (1171)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~ 83 (1171)
+..++.+++++..++.++..+++.+.+.|.++|+++||+|++|+.+.+++.+..++..+...+..........+...+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (578)
T 4a82_A 177 TVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTD 256 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678888899999999999999999999999999999999999999988887777665555555444433333322
Q ss_pred H--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCC--CCCCC
Q 001055 84 L--VTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP--PLTSG 159 (1171)
Q Consensus 84 ~--~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~--~~~~~ 159 (1171)
+ +.++++|.+.+..|.++++.+++++.++..+..|+..++..+..+.++..|++||.++++.+++...+.. +.+..
T Consensus 257 ~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~ 336 (578)
T 4a82_A 257 IGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIK 336 (578)
T ss_dssp HHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCCTTCCCCCCC
T ss_pred HHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccccCCC
Confidence 2 3456678888899999999999999999999999999999999999999999999999987654221111 11222
Q ss_pred CCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecC
Q 001055 160 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRG 227 (1171)
Q Consensus 160 ~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~ 227 (1171)
...|+++|++|+|++ .++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .++
T Consensus 337 ~~~i~~~~v~~~y~~-~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~ 415 (578)
T 4a82_A 337 QGRIDIDHVSFQYND-NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRN 415 (578)
T ss_dssp SCCEEEEEEEECSCS-SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHH
T ss_pred CCeEEEEEEEEEcCC-CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhh
Confidence 346999999999974 3468999999999999999999999999999999999999999886532 234
Q ss_pred cEEEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccC
Q 001055 228 TVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 306 (1171)
Q Consensus 228 ~i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~ 306 (1171)
.||||||+|++|++||+|||.+|.+ .+++++.++++.+++.+.++.+|+|++|.+|++|.+|||||||||+|||||+++
T Consensus 416 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~ 495 (578)
T 4a82_A 416 QIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNN 495 (578)
T ss_dssp TEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHC
T ss_pred heEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcC
Confidence 6999999999999999999999864 456778899999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHH
Q 001055 307 SDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 386 (1171)
Q Consensus 307 ~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 386 (1171)
|+++|||||||+||+++++.+.+.+.+. .+++|+|+||||++.+..||||++|++|+++++|+++++.+..+.|.+++.
T Consensus 496 p~illlDEpts~LD~~~~~~i~~~l~~~-~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~~~ 574 (578)
T 4a82_A 496 PPILILDEATSALDLESESIIQEALDVL-SKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYS 574 (578)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHH-TTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHHHT
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHH
Confidence 9999999999999999999998866544 467999999999999999999999999999999999999988777777653
No 18
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.9e-57 Score=557.92 Aligned_cols=382 Identities=24% Similarity=0.359 Sum_probs=322.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 001055 4 VQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSI-- 81 (1171)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~-- 81 (1171)
+..++.+++++..++.++..+++.+.+.|.++|+++||+|++|+.+.+++.+..++..+...+..........+...+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (587)
T 3qf4_A 179 LFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVN 258 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778888899999999999999999999999999999999888887765555444333333332222222211
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCC--CCCCC
Q 001055 82 PVLVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP--PLTSG 159 (1171)
Q Consensus 82 ~~~~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~--~~~~~ 159 (1171)
...+.++++|.+.+..|.++++.+++++.++..+..|+..++..+..+.++..+++||.++++.+++...+.. ..++.
T Consensus 259 ~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~ 338 (587)
T 3qf4_A 259 MGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADNALALPNV 338 (587)
T ss_dssp HHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTTCBCCSCC
T ss_pred HHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCccccCCC
Confidence 2234456788888999999999999999999999999999999999999999999999999987653221111 11122
Q ss_pred CCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecC
Q 001055 160 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRG 227 (1171)
Q Consensus 160 ~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~ 227 (1171)
...|+++|++|+|+. .++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. +++
T Consensus 339 ~~~i~~~~v~~~y~~-~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~ 417 (587)
T 3qf4_A 339 EGSVSFENVEFRYFE-NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRG 417 (587)
T ss_dssp CCCEEEEEEEECSSS-SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHH
T ss_pred CCcEEEEEEEEEcCC-CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHh
Confidence 346999999999974 3568999999999999999999999999999999999999999886533 245
Q ss_pred cEEEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccC
Q 001055 228 TVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 306 (1171)
Q Consensus 228 ~i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~ 306 (1171)
+|+||||+|++|++||+|||.++.+ .+++++.++++.+++.++++.+|+|++|.+|++|.+|||||||||+|||||+++
T Consensus 418 ~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~ 497 (587)
T 3qf4_A 418 HISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKK 497 (587)
T ss_dssp HEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTC
T ss_pred heEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcC
Confidence 6999999999999999999999864 567788889999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHH
Q 001055 307 SDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 386 (1171)
Q Consensus 307 ~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 386 (1171)
|+++|||||||+||+++++.+.+.+.+. .+|+|+|+||||++.+..||||++|++|+++++|+++++.++.+.|++++.
T Consensus 498 p~illlDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~ 576 (587)
T 3qf4_A 498 PKVLILDDCTSSVDPITEKRILDGLKRY-TKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKPYREIYE 576 (587)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHH-STTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHHCHHHHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHH
Confidence 9999999999999999999999976654 468999999999999999999999999999999999999988887887765
Q ss_pred H
Q 001055 387 N 387 (1171)
Q Consensus 387 ~ 387 (1171)
.
T Consensus 577 ~ 577 (587)
T 3qf4_A 577 S 577 (587)
T ss_dssp H
T ss_pred H
Confidence 4
No 19
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=4.1e-56 Score=549.56 Aligned_cols=380 Identities=23% Similarity=0.331 Sum_probs=319.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 001055 6 TFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPV-- 83 (1171)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~-- 83 (1171)
.++.+++++..++..+..++..+.+.|.++|+++||.|++|+.+.+++.+..++..+...+..........+...+..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (582)
T 3b5x_A 183 SFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLA 262 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667778888888999999999999999999999999999988887765555444433333333333322222222
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCcE
Q 001055 84 LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAI 163 (1171)
Q Consensus 84 ~~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i 163 (1171)
.+.++++|.+.+..|.++++.+++++.++..+..|+..++..+..+.++..+++|+.++++.+++......+.++....|
T Consensus 263 ~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i 342 (582)
T 3b5x_A 263 LFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVNGEV 342 (582)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCCCeE
Confidence 22346678888899999999999999999999999999999999999999999999999987553221111111123469
Q ss_pred EEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEEE
Q 001055 164 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAY 231 (1171)
Q Consensus 164 ~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~ 231 (1171)
+++|++|+|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .++.|||
T Consensus 343 ~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 421 (582)
T 3b5x_A 343 DVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFAL 421 (582)
T ss_pred EEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEE
Confidence 999999999742 367999999999999999999999999999999999999999886532 2456999
Q ss_pred EecCCCCCcccHHHHHhcCC--CCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCE
Q 001055 232 VPQVSWIFNATVRDNILFGS--AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 309 (1171)
Q Consensus 232 v~Q~~~l~~~Tv~eni~~g~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~v 309 (1171)
|||+|++|++||+|||.++. ..++++++++++.+++.+.++.+|+|++|.+|++|.+||||||||++|||||+++|++
T Consensus 422 v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~i 501 (582)
T 3b5x_A 422 VSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPV 501 (582)
T ss_pred EcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCE
Confidence 99999999999999999985 3567788999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHHH
Q 001055 310 FIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 387 (1171)
Q Consensus 310 llLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 387 (1171)
+|||||||+||+++++.+.+.+.+.. +|+|+|+||||++.+..||+|++|++|+++++|+++++.+..+.|.+++..
T Consensus 502 lllDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 578 (582)
T 3b5x_A 502 LILDEATSALDTESERAIQAALDELQ-KNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRI 578 (582)
T ss_pred EEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHH
Confidence 99999999999999999998776654 589999999999999999999999999999999999999888888877653
No 20
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.8e-57 Score=559.65 Aligned_cols=382 Identities=24% Similarity=0.363 Sum_probs=328.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001055 4 VQTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPV 83 (1171)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~ 83 (1171)
+..++.+++++..++..+..+++.+.+.|.++|+++||+|++|+.+.+++.+..++..+...+..........+...+..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (598)
T 3qf4_B 193 ITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNN 272 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667788888889999999999999999999999999999999999998888777766666555444333333332
Q ss_pred --HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCC-CCCCCC
Q 001055 84 --LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNP-PLTSGL 160 (1171)
Q Consensus 84 --~~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~-~~~~~~ 160 (1171)
.+.++++|.+.+..|.++++.+++++.++..+..|+..++..+..+.++..+++||.++++.+++...+.+ +..+..
T Consensus 273 ~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~ 352 (598)
T 3qf4_B 273 LGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPDAVELREVR 352 (598)
T ss_dssp HHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSSCCCCCSCC
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCC
Confidence 23456678888899999999999999999999999999999999999999999999999987654322111 112223
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCc
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 228 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 228 (1171)
..|+++|++|+|++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. ++++
T Consensus 353 ~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~ 430 (598)
T 3qf4_B 353 GEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSS 430 (598)
T ss_dssp CCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred CeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhc
Confidence 46999999999973 467999999999999999999999999999999999999999886532 2346
Q ss_pred EEEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCC
Q 001055 229 VAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 307 (1171)
Q Consensus 229 i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~ 307 (1171)
||||||+|++|++||+|||.++.+ .+++++.++++.+++.+.++.+|+|++|.+|++|.+|||||||||+|||||+++|
T Consensus 431 i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p 510 (598)
T 3qf4_B 431 IGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANP 510 (598)
T ss_dssp EEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCC
T ss_pred eEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999864 4567788899999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHHH
Q 001055 308 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 387 (1171)
Q Consensus 308 ~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 387 (1171)
++||||||||+||+++++.+.+.+.+. .+|+|+|+||||++.+..||+|++|++|+++++|+++++.+..+.|.+++..
T Consensus 511 ~illlDEpts~LD~~~~~~i~~~l~~~-~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 589 (598)
T 3qf4_B 511 KILILDEATSNVDTKTEKSIQAAMWKL-MEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTS 589 (598)
T ss_dssp SEEEECCCCTTCCHHHHHHHHHHHHHH-HTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHTTCHHHHHHHH
T ss_pred CEEEEECCccCCCHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHH
Confidence 999999999999999999999877665 3689999999999999999999999999999999999999888888887764
Q ss_pred h
Q 001055 388 A 388 (1171)
Q Consensus 388 ~ 388 (1171)
+
T Consensus 590 ~ 590 (598)
T 3qf4_B 590 Q 590 (598)
T ss_dssp H
T ss_pred H
Confidence 3
No 21
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=3.6e-56 Score=550.14 Aligned_cols=381 Identities=24% Similarity=0.327 Sum_probs=318.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 001055 5 QTFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIPV- 83 (1171)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~~- 83 (1171)
..++.+++++..++.++..+++.+.+.|.++|+++||.|++|+.+.+++.+..++..+...+..........+...+..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (582)
T 3b60_A 182 IRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASL 261 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667788888899999999999999999999999999999988887765555444433333333333222222221
Q ss_pred -HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCc
Q 001055 84 -LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPA 162 (1171)
Q Consensus 84 -~~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~ 162 (1171)
.+.++++|.+.+..|.++++.+++++.++..+..|+..++..+..+.++..+++|+.++++.+++......+.++....
T Consensus 262 ~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~ 341 (582)
T 3b60_A 262 ALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRVIDRATGD 341 (582)
T ss_dssp HHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCCCCBCCSCCCCC
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCc
Confidence 2234567778888899999999999999999999999999999999999999999999998765322111111122346
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 230 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 230 (1171)
|+++|++|+|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .++.||
T Consensus 342 i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 420 (582)
T 3b60_A 342 LEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVA 420 (582)
T ss_dssp EEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEE
T ss_pred EEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCe
Confidence 9999999999732 367999999999999999999999999999999999999999876532 234699
Q ss_pred EEecCCCCCcccHHHHHhcCC--CCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCC
Q 001055 231 YVPQVSWIFNATVRDNILFGS--AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 308 (1171)
Q Consensus 231 ~v~Q~~~l~~~Tv~eni~~g~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~ 308 (1171)
||||+|++|++||+|||.++. ..+++++.++++.+++.+.++.+|+|++|.+|++|.+|||||||||+|||||+++|+
T Consensus 421 ~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~ 500 (582)
T 3b60_A 421 LVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSP 500 (582)
T ss_dssp EECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCS
T ss_pred EEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999985 356778899999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHHH
Q 001055 309 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMEN 387 (1171)
Q Consensus 309 vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 387 (1171)
++|||||||+||+++++.+.+.+.+.. +|+|+|+||||++.+..||||++|++|+++++|+++++.+..+.|.+++..
T Consensus 501 illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 578 (582)
T 3b60_A 501 ILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKM 578 (582)
T ss_dssp EEEEETTTSSCCHHHHHHHHHHHHHHH-TTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHHHHH
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHH
Confidence 999999999999999999998776654 489999999999999999999999999999999999998877777777653
No 22
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.6e-55 Score=545.79 Aligned_cols=380 Identities=23% Similarity=0.350 Sum_probs=308.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 001055 6 TFIISRMQKLTKEGLQRTDKRIGLMNEILAAMDAVKCYAWENSFQSKVQNVRNDELSWFRKAQFLAACNSFILNSIP--V 83 (1171)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~d~r~~~~~e~l~~i~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~--~ 83 (1171)
.++.+++++..++..+..++..+.+.|.++|+++||.|++|+.+.+++.+..++..+...+..........+...+. .
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (595)
T 2yl4_A 180 VIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLI 259 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778888888989999999999999999999999999988888776555544443333333333222222221 2
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCC-CCCC-CCCCC
Q 001055 84 LVTVVSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLP-NPPL-TSGLP 161 (1171)
Q Consensus 84 ~~~~~~~g~~~~~~~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~-~~~~-~~~~~ 161 (1171)
.+.++++|.+.+..|.++++.+++++.++..+..|+..++..+..+.++..+++|+.++++.+++...+ .+.. .+...
T Consensus 260 ~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~ 339 (595)
T 2yl4_A 260 VLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQ 339 (595)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSSCSBCCCTTTCC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCCCCCcCCCC
Confidence 234566788888999999999999999999999999999999999999999999999999875432111 1111 11223
Q ss_pred c-EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCc
Q 001055 162 A-ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 228 (1171)
Q Consensus 162 ~-i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 228 (1171)
. |+++|++|+|+++.++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. +++.
T Consensus 340 ~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~ 419 (595)
T 2yl4_A 340 GALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSK 419 (595)
T ss_dssp CCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHS
T ss_pred CeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 5 99999999997433457999999999999999999999999999999999999999876532 2346
Q ss_pred EEEEecCCCCCcccHHHHHhcCCC----CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhc
Q 001055 229 VAYVPQVSWIFNATVRDNILFGSA----FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 304 (1171)
Q Consensus 229 i~~v~Q~~~l~~~Tv~eni~~g~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~ 304 (1171)
||||||+|++|++||+|||.++.+ .++++++++++.+++.+.++.+|+|++|.+|++|.+|||||||||+|||||+
T Consensus 420 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~ 499 (595)
T 2yl4_A 420 IGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALL 499 (595)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHH
T ss_pred eEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999864 4577889999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhc-chHHHH
Q 001055 305 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN-GELFQK 383 (1171)
Q Consensus 305 ~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~ 383 (1171)
++|+++|||||||+||+++++.+.+.+.+.. +++|+|+||||++.+..||||++|++|+++++|+++++.++ .+.|..
T Consensus 500 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 578 (595)
T 2yl4_A 500 KNPKILLLDEATSALDAENEYLVQEALDRLM-DGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRK 578 (595)
T ss_dssp HCCSEEEEECCCSSCCHHHHHHHHHHHHHHH-TTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSCC------C----
T ss_pred cCCCEEEEECcccCCCHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCChHHHH
Confidence 9999999999999999999999998776654 38999999999999989999999999999999999999874 556666
Q ss_pred HHH
Q 001055 384 LME 386 (1171)
Q Consensus 384 ~~~ 386 (1171)
++.
T Consensus 579 ~~~ 581 (595)
T 2yl4_A 579 LMN 581 (595)
T ss_dssp ---
T ss_pred HHH
Confidence 554
No 23
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.2e-55 Score=497.48 Aligned_cols=270 Identities=31% Similarity=0.505 Sum_probs=238.2
Q ss_pred HHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHH
Q 001055 749 ENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKS 828 (1171)
Q Consensus 749 ~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKS 828 (1171)
+..+.+++|+.++++.+.+.... ....+..+..+.|+++||+|+|++. .++|+||||+|++||++||+||||||||
T Consensus 19 ~~~~~~~~ri~~~l~~~~~~~~~---~~~~~~~~~~~~i~~~~vs~~y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKS 94 (306)
T 3nh6_A 19 SHMFIDMENMFDLLKEETEVKDL---PGAGPLRFQKGRIEFENVHFSYADG-RETLQDVSFTVMPGQTLALVGPSGAGKS 94 (306)
T ss_dssp CCTTCCHHHHHHHHHHHHSCCCC---TTCBCCCCSSCCEEEEEEEEESSTT-CEEEEEEEEEECTTCEEEEESSSCHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccc---ccccccCCCCCeEEEEEEEEEcCCC-CceeeeeeEEEcCCCEEEEECCCCchHH
Confidence 34456777877776544332110 0111112235679999999999753 4799999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHH
Q 001055 829 SMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIR 907 (1171)
Q Consensus 829 TLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~ 907 (1171)
||+++|+|+++|++|+|.++|+++..++...+|++||||||+|.+|++||++||.+.. ...+++++++++.+++.+++.
T Consensus 95 TLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~ 174 (306)
T 3nh6_A 95 TILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIM 174 (306)
T ss_dssp HHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998764 356788999999999999999
Q ss_pred HccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh
Q 001055 908 RNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID 987 (1171)
Q Consensus 908 ~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~ 987 (1171)
.+|.|+++.+++.+.+|||||||||+|||||+++|+|||||||||+||+.+++.|++.|+++.+++|+|+||||++++..
T Consensus 175 ~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~ 254 (306)
T 3nh6_A 175 AFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN 254 (306)
T ss_dssp HSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT
T ss_pred hccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred cCEEEEEeCcEEEEecChhHHhhcCCChHHHHHHhh
Q 001055 988 CDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQST 1023 (1171)
Q Consensus 988 ~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~ 1023 (1171)
||+|++|++|+|++.|+|+++++. .+.|.+++..+
T Consensus 255 aD~i~vl~~G~iv~~G~~~el~~~-~~~y~~l~~~q 289 (306)
T 3nh6_A 255 ADQILVIKDGCIVERGRHEALLSR-GGVYADMWQLQ 289 (306)
T ss_dssp CSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHHH
T ss_pred CCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHHH
Confidence 999999999999999999999986 46787777643
No 24
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=6.4e-50 Score=440.02 Aligned_cols=237 Identities=34% Similarity=0.551 Sum_probs=216.9
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhhe
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 864 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 864 (1171)
.+|+++||+|+|+++..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.|
T Consensus 6 ~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 35999999999942223699999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001055 865 GIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 943 (1171)
Q Consensus 865 ~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~ 943 (1171)
|||||++.+|..||++|+.+.. ...++++.++++.+++.++++++|.|+++.+++.+.+|||||||||+|||||+++|+
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ 165 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 165 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999889999998653 245677889999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHHHH
Q 001055 944 ILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMVQ 1021 (1171)
Q Consensus 944 iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~ 1021 (1171)
+|||||||++||+.+++.+++.|+++.+++|||+|||+++.+..||+|++|++|++++.|+++++++.+.+.|.+++.
T Consensus 166 lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~ 243 (247)
T 2ff7_A 166 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243 (247)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHH
Confidence 999999999999999999999999886789999999999998789999999999999999999998764556665543
No 25
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.5e-49 Score=447.79 Aligned_cols=260 Identities=25% Similarity=0.456 Sum_probs=223.7
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccCC-CC-CCCCCCCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCcc
Q 001055 126 ITQVVNANVSLKRMEEFLLAEEKILLP-NP-PLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEG 203 (1171)
Q Consensus 126 ~~~~~~a~~s~~Ri~~~l~~~~~~~~~-~~-~~~~~~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsG 203 (1171)
+..+..+.++++|+.++++.+++.... .+ +.......|+++|++|+|+. ++++|+||||+|++||++||+||||||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~sGsG 92 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSGAG 92 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSSCHH
T ss_pred chhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCCCch
Confidence 445667889999999999865532211 11 11122346999999999973 357999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCccce------------ecCcEEEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHH
Q 001055 204 KTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHD 270 (1171)
Q Consensus 204 KSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~ 270 (1171)
||||+++|+|+++|++|.+.. ++..||||||+|++|++||+|||.++.. ...+++.++++.+++.+.
T Consensus 93 KSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~ 172 (306)
T 3nh6_A 93 KSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDA 172 (306)
T ss_dssp HHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHH
Confidence 999999999999999886532 2346999999999999999999999864 456788899999999999
Q ss_pred HhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcch
Q 001055 271 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHF 350 (1171)
Q Consensus 271 ~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~ 350 (1171)
++.+|.|++|.+|++|.+|||||||||+|||||+.+|+|||||||||+||+.+++.+.+.+.+. .+++|+|+||||++.
T Consensus 173 i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l-~~~~Tvi~itH~l~~ 251 (306)
T 3nh6_A 173 IMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKV-CANRTTIVVAHRLST 251 (306)
T ss_dssp HHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHH-HTTSEEEEECCSHHH
T ss_pred HHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHH-cCCCEEEEEEcChHH
Confidence 9999999999999999999999999999999999999999999999999999999999877654 357999999999999
Q ss_pred hhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHHHh
Q 001055 351 LSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLMENA 388 (1171)
Q Consensus 351 l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 388 (1171)
+..||+|++|++|+|+++|+++++++..+.|..++...
T Consensus 252 ~~~aD~i~vl~~G~iv~~G~~~el~~~~~~y~~l~~~q 289 (306)
T 3nh6_A 252 VVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQ 289 (306)
T ss_dssp HHTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHH
T ss_pred HHcCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHHH
Confidence 99999999999999999999999998888888887643
No 26
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=9.3e-48 Score=482.05 Aligned_cols=212 Identities=22% Similarity=0.354 Sum_probs=156.7
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHH-HhcCC-------CC----------------
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNT-LFRIV-------EL---------------- 840 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~-l~g~~-------~p---------------- 840 (1171)
..++++|+++ .+|+||||+|++||++||+|+||||||||++. |+|++ .|
T Consensus 501 ~~L~v~~l~~-------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~ 573 (842)
T 2vf7_A 501 GWLELNGVTR-------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGS 573 (842)
T ss_dssp CEEEEEEEEE-------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CC
T ss_pred ceEEEEeeee-------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccccccccccc
Confidence 3599999976 26999999999999999999999999999996 66554 23
Q ss_pred --CCc-------eEEECCEecCCCCh----------HHHhhhe---------EEEcCCcc--------------------
Q 001055 841 --ERG-------RILIDGFDIAKFGL----------MDLRKIL---------GIIPQSPV-------------------- 872 (1171)
Q Consensus 841 --~~G-------~I~i~g~~i~~~~~----------~~~r~~i---------~~v~Q~~~-------------------- 872 (1171)
.+| .|.++|.++...+. +.+|+.+ ||.++...
T Consensus 574 ~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~ 653 (842)
T 2vf7_A 574 ARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVE 653 (842)
T ss_dssp CEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEET
T ss_pred ccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchh
Confidence 466 68899988764332 2333322 33222110
Q ss_pred --c------------------------cc-ccHHhhccC--------CCCCCHHHHHHHHHHhcHHHHHHHccCCcch-h
Q 001055 873 --L------------------------FS-GTVRFNLDP--------FSEHSDADLWEALERAHLKDAIRRNSLGLDA-Q 916 (1171)
Q Consensus 873 --l------------------------f~-~tv~~nl~~--------~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~-~ 916 (1171)
+ +. .++.+|+.. +... + . .....+.++.+ |+.. .
T Consensus 654 ~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~-~-~------~~~~~~~L~~~--gL~~~~ 723 (842)
T 2vf7_A 654 LLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADE-S-A------IFRALDTLREV--GLGYLR 723 (842)
T ss_dssp TCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTS-H-H------HHHHHHHHHHT--TCTTSB
T ss_pred hhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcc-h-H------HHHHHHHHHHc--CCCccc
Confidence 0 11 144444321 1110 0 0 11234555554 4444 3
Q ss_pred hhcCCCCCChhHHHHHHHHHHhccC---CCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhhcCEEE
Q 001055 917 VSEAGENFSVGQRQLLSLSRALLRR---SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRIL 992 (1171)
Q Consensus 917 ~~~~~~~LSgGqkqrl~lArall~~---p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~ 992 (1171)
.++...+|||||||||+|||+|+++ |+||||||||+|||+.+.+.+++.|+++. .++|||+||||++++..||||+
T Consensus 724 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii 803 (842)
T 2vf7_A 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVL 803 (842)
T ss_dssp TTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE
T ss_pred ccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEE
Confidence 5677789999999999999999996 69999999999999999999999999875 5899999999999997799999
Q ss_pred EE------eCcEEEEecChhHHhhcCC
Q 001055 993 LL------DSGRVLEYDTPEELLSNEG 1013 (1171)
Q Consensus 993 vl------~~G~i~~~g~~~el~~~~~ 1013 (1171)
+| ++|+|++.|+++++++...
T Consensus 804 ~L~p~~g~~~G~Iv~~g~~~el~~~~~ 830 (842)
T 2vf7_A 804 DIGPGAGEDGGRLVAQGTPAEVAQAAG 830 (842)
T ss_dssp EECSSSGGGCCSEEEEECHHHHTTCTT
T ss_pred EECCCCCCCCCEEEEEcCHHHHHhCch
Confidence 99 6999999999999987543
No 27
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=3e-48 Score=432.40 Aligned_cols=236 Identities=31% Similarity=0.483 Sum_probs=212.2
Q ss_pred ccEEEEeeEEEeCC-CCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhh
Q 001055 785 GSIKFEDVVLRYRP-ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 863 (1171)
Q Consensus 785 g~i~~~~vs~~y~~-~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 863 (1171)
+.|+++||+++|++ ...++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|++
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 46999999999975 12369999999999999999999999999999999999999999999999999988777788889
Q ss_pred eEEEcCCcccccccHHhhccCCCC-CCH-HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001055 864 LGIIPQSPVLFSGTVRFNLDPFSE-HSD-ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 864 i~~v~Q~~~lf~~tv~~nl~~~~~-~~~-~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 941 (1171)
|+||||++.+|..||++|+.+... ..+ +++.++++..++.++++.+|.|+++..++.+.+|||||||||+|||||+++
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~ 174 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRK 174 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTC
T ss_pred EEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcC
Confidence 999999999998899999986532 222 556677788889999999999999999998999999999999999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHH
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKM 1019 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~ 1019 (1171)
|+||||||||++||+.++..+++.|+++.+ ++|||+||||++.+..||+|++|++|++++.|+++++++.. +.|.++
T Consensus 175 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~-~~~~~~ 253 (271)
T 2ixe_A 175 PRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERG-GCYRSM 253 (271)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHHT-SHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCc-HHHHHH
Confidence 999999999999999999999999998754 79999999999998889999999999999999999998653 566655
Q ss_pred HH
Q 001055 1020 VQ 1021 (1171)
Q Consensus 1020 ~~ 1021 (1171)
+.
T Consensus 254 ~~ 255 (271)
T 2ixe_A 254 VE 255 (271)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 28
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=5e-48 Score=428.24 Aligned_cols=233 Identities=34% Similarity=0.592 Sum_probs=212.1
Q ss_pred cEEEEeeEEEeCCCC-CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhhe
Q 001055 786 SIKFEDVVLRYRPEL-PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 864 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~-~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 864 (1171)
.|+++||+++|++.. +++|+|+||+|++||++||+||||||||||+++|+|+++| +|+|.++|.++...+...+|+.|
T Consensus 17 ~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i 95 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSII 95 (260)
T ss_dssp CEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTE
T ss_pred eEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccE
Confidence 499999999997531 3699999999999999999999999999999999999987 89999999999888878889999
Q ss_pred EEEcCCcccccccHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001055 865 GIIPQSPVLFSGTVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 943 (1171)
Q Consensus 865 ~~v~Q~~~lf~~tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~ 943 (1171)
+||||++.+|+.||++|+.+.. ...++++.++++.+++.+++..+|.++++.+++.+.+|||||||||+|||||+++|+
T Consensus 96 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 175 (260)
T 2ghi_A 96 GIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPK 175 (260)
T ss_dssp EEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCC
Confidence 9999999999889999997643 235667888899999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHHH
Q 001055 944 ILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 1020 (1171)
Q Consensus 944 iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~ 1020 (1171)
||||||||++||+.+++.+++.|+++.+++|||+||||++.+..||+|++|++|++++.|+++++++.. +.|.+++
T Consensus 176 lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~-~~~~~~~ 251 (260)
T 2ghi_A 176 IVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLN-GEYAEMW 251 (260)
T ss_dssp EEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHHT-SHHHHHH
T ss_pred EEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhcC-hHHHHHH
Confidence 999999999999999999999999987789999999999998789999999999999999999998653 4555444
No 29
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.2e-48 Score=451.56 Aligned_cols=238 Identities=35% Similarity=0.688 Sum_probs=221.7
Q ss_pred CCCCCCccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChH
Q 001055 779 PGWPSSGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM 858 (1171)
Q Consensus 779 ~~~~~~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~ 858 (1171)
..|+..+.|+++||+|+|+....++|+||||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...++.
T Consensus 12 ~~~~~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~ 90 (390)
T 3gd7_A 12 DIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLE 90 (390)
T ss_dssp CCSSSSCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHH
T ss_pred cCCCCCCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChH
Confidence 3466667899999999996433479999999999999999999999999999999999998 899999999999999999
Q ss_pred HHhhheEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 859 DLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 859 ~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
.+|+.||||||++.+|..||++|+.++....++++.++++.+++.+++++.|.++++.+++.+.+|||||||||+|||||
T Consensus 91 ~~rr~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL 170 (390)
T 3gd7_A 91 QWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSV 170 (390)
T ss_dssp HHHHTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHH
T ss_pred HHhCCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999987666678889999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHH
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFS 1017 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 1017 (1171)
+++|+|||||||||+||+.++..+++.|++...++|+|+||||++.+..||||++|++|+|++.|+|+|+..++...|.
T Consensus 171 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~v 249 (390)
T 3gd7_A 171 LSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFV 249 (390)
T ss_dssp HTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBHHH
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCchHH
Confidence 9999999999999999999999999999987778999999999988878999999999999999999999987765554
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=5.4e-49 Score=432.33 Aligned_cols=224 Identities=34% Similarity=0.574 Sum_probs=208.2
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++||+++|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|++|+|
T Consensus 2 l~~~~l~~~y~~~-~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 2 LSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp EEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEEeCCC-CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 7899999999432 369999999999999999999999999999999999999999999999999988777778889999
Q ss_pred EcCCcccccccHHhhccCC-C-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001055 867 IPQSPVLFSGTVRFNLDPF-S-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 944 (1171)
Q Consensus 867 v~Q~~~lf~~tv~~nl~~~-~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 944 (1171)
|||++.+|..|+++|+.+. . ...++++.++++.+++.++++++|.|+++.+++.+.+|||||||||+|||||+++|++
T Consensus 81 v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~l 160 (243)
T 1mv5_A 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (243)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred EcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999988999999875 2 3456778899999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhc
Q 001055 945 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 945 LlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
|||||||++||+.+++.+++.|+++.+++|||+|||+++.+..||+|++|++|++++.|+++++++.
T Consensus 161 llLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (243)
T 1mv5_A 161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT 227 (243)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhc
Confidence 9999999999999999999999987778999999999999878999999999999999999999764
No 31
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.4e-46 Score=471.59 Aligned_cols=211 Identities=25% Similarity=0.373 Sum_probs=151.7
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHH---------HHHhcCCCCC------Cc------e
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSML---------NTLFRIVELE------RG------R 844 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl---------~~l~g~~~p~------~G------~ 844 (1171)
.+++++++ ...|+||||+|++|+++||+|+||||||||+ +++.+...+. +| .
T Consensus 589 ~l~v~~~~-------~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~ 661 (916)
T 3pih_A 589 SLKIKGVR-------HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKM 661 (916)
T ss_dssp EEEEEEEC-------STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEE
T ss_pred eEEEeeec-------cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccce
Confidence 46666653 2479999999999999999999999999997 3444443332 23 3
Q ss_pred EEECCEecCCCCh---H-------HHh-------------------------------hheEEEcCCcccccc-------
Q 001055 845 ILIDGFDIAKFGL---M-------DLR-------------------------------KILGIIPQSPVLFSG------- 876 (1171)
Q Consensus 845 I~i~g~~i~~~~~---~-------~~r-------------------------------~~i~~v~Q~~~lf~~------- 876 (1171)
|.+++.++...+. . .+| +..|+++|+..++..
T Consensus 662 i~idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~ 741 (916)
T 3pih_A 662 IAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDV 741 (916)
T ss_dssp EEECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTT
T ss_pred EeeccccccccccccccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeeccc
Confidence 5555555433211 0 111 235677776654432
Q ss_pred --------------------------cHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcch-hhhcCCCCCChhHH
Q 001055 877 --------------------------TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDA-QVSEAGENFSVGQR 929 (1171)
Q Consensus 877 --------------------------tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~-~~~~~~~~LSgGqk 929 (1171)
|+.+++.++..... .....+.++.+ |+.. .+++.+.+||||||
T Consensus 742 c~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~~~~--------~~~~~~~L~~v--GL~~~~lgq~~~~LSGGEr 811 (916)
T 3pih_A 742 CKGKRYNRETLEITYKGKNISDILDMTVDEALEFFKNIPS--------IKRTLQVLHDV--GLGYVKLGQPATTLSGGEA 811 (916)
T ss_dssp TTTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTTCHH--------HHHHHHHHHHT--TGGGSBTTCCSTTCCHHHH
T ss_pred ccccccchhhhhhhhccCCHHHHhhCCHHHHHHHHhcchh--------HHHHHHHHHHc--CCchhhccCCccCCCHHHH
Confidence 33333333322110 01122334443 4433 35677889999999
Q ss_pred HHHHHHHHhccCC---CEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhhcCEEEEE------eCcEE
Q 001055 930 QLLSLSRALLRRS---KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLL------DSGRV 999 (1171)
Q Consensus 930 qrl~lArall~~p---~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~vl------~~G~i 999 (1171)
|||+|||||+++| +||||||||+|||+.+.+.+++.|+++. .|+|||+||||++++..||+|++| ++|+|
T Consensus 812 QRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~I 891 (916)
T 3pih_A 812 QRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYI 891 (916)
T ss_dssp HHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEE
T ss_pred HHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEE
Confidence 9999999999876 7999999999999999999999999875 489999999999999889999999 89999
Q ss_pred EEecChhHHhhcCC
Q 001055 1000 LEYDTPEELLSNEG 1013 (1171)
Q Consensus 1000 ~~~g~~~el~~~~~ 1013 (1171)
++.|+|+++++.++
T Consensus 892 v~~Gtpeel~~~~~ 905 (916)
T 3pih_A 892 VATGTPEEIAKNPH 905 (916)
T ss_dssp EEEESHHHHHSCTT
T ss_pred EEEcCHHHHHhCCc
Confidence 99999999998654
No 32
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=6.4e-46 Score=404.00 Aligned_cols=214 Identities=24% Similarity=0.354 Sum_probs=193.0
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhhe
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 864 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 864 (1171)
+.|+++||+++|++...++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i 71 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 71 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CE
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EE
Confidence 45999999999964334799999999999999999999999999999999999999999999998 49
Q ss_pred EEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001055 865 GIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 944 (1171)
Q Consensus 865 ~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 944 (1171)
+|+||++.+|+.||++|+.+.....+....+.++.+++.++++.+|.+.++.+++.+.+|||||||||+|||||+++|++
T Consensus 72 ~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l 151 (229)
T 2pze_A 72 SFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 151 (229)
T ss_dssp EEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSE
T ss_pred EEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999998899999986544444456667778888999999998888888888999999999999999999999999
Q ss_pred EEEecCCcCCCHHHHHHHHHHH-HHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhc
Q 001055 945 LVLDEATAAVDVRTDALIQKTI-REEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 945 LlLDEpTs~LD~~t~~~i~~~l-~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
|||||||++||+.+++.+++.+ ++...++|+|+|||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 152 llLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 152 YLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp EEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC
T ss_pred EEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999974 554457899999999999877999999999999999999999864
No 33
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=5.3e-46 Score=425.24 Aligned_cols=227 Identities=25% Similarity=0.421 Sum_probs=192.2
Q ss_pred ccEEEEeeEEEeCCCC--CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---
Q 001055 785 GSIKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD--- 859 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~--~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~--- 859 (1171)
..|+++||+++|+.+. .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+...
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 3599999999996431 35899999999999999999999999999999999999999999999999999888765
Q ss_pred HhhheEEEcCCcccccc-cHHhhccCC---CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001055 860 LRKILGIIPQSPVLFSG-TVRFNLDPF---SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 935 (1171)
Q Consensus 860 ~r~~i~~v~Q~~~lf~~-tv~~nl~~~---~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 935 (1171)
+|++||||||++.+|.. ||++|+.+. ......+..+ .+.+.++.+ |+....+....+|||||||||+||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~-----~v~~lL~~v--gL~~~~~~~~~~LSGGqkQRVaIA 175 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKR-----RVTELLSLV--GLGDKHDSYPSNLSGGQKQRVAIA 175 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHH-----HHHHHHHHH--TCGGGTTCCTTTSCHHHHHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHH
Confidence 47789999999998865 999999642 1122222211 122333332 555566677789999999999999
Q ss_pred HHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcC
Q 001055 936 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012 (1171)
Q Consensus 936 rall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~ 1012 (1171)
|||+.+|+||||||||++||+.+.+.+++.|+++. .+.|||+||||++.+.. ||||++|++|+|++.|++++++..+
T Consensus 176 rAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~p 255 (366)
T 3tui_C 176 RALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHP 255 (366)
T ss_dssp HHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSSC
T ss_pred HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999999999875 38999999999999987 9999999999999999999999876
Q ss_pred CChHHH
Q 001055 1013 GSSFSK 1018 (1171)
Q Consensus 1013 ~~~~~~ 1018 (1171)
...+.+
T Consensus 256 ~~~~~~ 261 (366)
T 3tui_C 256 KTPLAQ 261 (366)
T ss_dssp CSHHHH
T ss_pred CcHHHH
Confidence 655543
No 34
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=1.6e-45 Score=460.39 Aligned_cols=211 Identities=26% Similarity=0.351 Sum_probs=156.5
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHh-cCC-------CCCCc-------------e
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF-RIV-------ELERG-------------R 844 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~-g~~-------~p~~G-------------~ 844 (1171)
.++++|++. .+|+||||+|++||++||+|+||||||||+++|+ |.+ .+..| .
T Consensus 629 ~L~v~~l~~-------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~ 701 (972)
T 2r6f_A 629 WLEVVGARE-------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKV 701 (972)
T ss_dssp EEEEEEECS-------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEE
T ss_pred EEEEecCcc-------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceE
Confidence 489999852 3799999999999999999999999999999854 221 12233 4
Q ss_pred EEECCEecCCCC---hH-------HH---------hhheEEEcCCcccc-------------------------------
Q 001055 845 ILIDGFDIAKFG---LM-------DL---------RKILGIIPQSPVLF------------------------------- 874 (1171)
Q Consensus 845 I~i~g~~i~~~~---~~-------~~---------r~~i~~v~Q~~~lf------------------------------- 874 (1171)
|.++|.++...+ +. .. .+.+||+||...+.
T Consensus 702 I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~ 781 (972)
T 2r6f_A 702 IDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEV 781 (972)
T ss_dssp EEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTT
T ss_pred EEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccc
Confidence 788888874322 11 11 23468888864321
Q ss_pred ------------------------cccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcch-hhhcCCCCCChhHH
Q 001055 875 ------------------------SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDA-QVSEAGENFSVGQR 929 (1171)
Q Consensus 875 ------------------------~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~-~~~~~~~~LSgGqk 929 (1171)
..|+.+|+.++.... .+ ....+.++.+ |+.. ..+....+||||||
T Consensus 782 c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~~--~~------~~~~~~L~~~--gL~~~~l~~~~~~LSGGek 851 (972)
T 2r6f_A 782 CHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIP--KI------KRKLETLYDV--GLGYMKLGQPATTLSGGEA 851 (972)
T ss_dssp TTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSCH--HH------HHHHHHHHHT--TCSSSBTTCCGGGCCHHHH
T ss_pred cccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcch--hH------HHHHHHHHHc--CCCcccccCchhhCCHHHH
Confidence 012233332222110 00 1123455554 5555 56777789999999
Q ss_pred HHHHHHHHhccCC---CEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhhcCEEEEE------eCcEE
Q 001055 930 QLLSLSRALLRRS---KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLL------DSGRV 999 (1171)
Q Consensus 930 qrl~lArall~~p---~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~vl------~~G~i 999 (1171)
|||+|||+|+++| +||||||||+|||+.+.+.+++.|+++. .|.|||+||||++++..||||++| ++|+|
T Consensus 852 QRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G~I 931 (972)
T 2r6f_A 852 QRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQI 931 (972)
T ss_dssp HHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCCSE
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCCEE
Confidence 9999999999875 9999999999999999999999999875 589999999999998779999999 78999
Q ss_pred EEecChhHHhhcCC
Q 001055 1000 LEYDTPEELLSNEG 1013 (1171)
Q Consensus 1000 ~~~g~~~el~~~~~ 1013 (1171)
++.|+++++.+...
T Consensus 932 v~~g~~~el~~~~~ 945 (972)
T 2r6f_A 932 VAVGTPEEVAEVKE 945 (972)
T ss_dssp EEEESHHHHHTCTT
T ss_pred EEecCHHHHHhCch
Confidence 99999999987543
No 35
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=6.9e-46 Score=405.63 Aligned_cols=220 Identities=25% Similarity=0.451 Sum_probs=194.1
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++||+++|++...++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| .|+|
T Consensus 4 l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~~ 70 (237)
T 2cbz_A 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVAY 70 (237)
T ss_dssp EEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEEE
T ss_pred EEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEEE
Confidence 899999999974234799999999999999999999999999999999999999999999998 3999
Q ss_pred EcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 001055 867 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 946 (1171)
Q Consensus 867 v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLl 946 (1171)
|||+|.++..||++|+.+.....++...++++.+++.+.+..+|.++++.+++.+.+|||||||||+|||||+++|+|||
T Consensus 71 v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lll 150 (237)
T 2cbz_A 71 VPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYL 150 (237)
T ss_dssp ECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEE
T ss_pred EcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999988889999998654433445566777777778888888888888888999999999999999999999999999
Q ss_pred EecCCcCCCHHHHHHHHHHHH---HHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhhcCCChHHHHH
Q 001055 947 LDEATAAVDVRTDALIQKTIR---EEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLSNEGSSFSKMV 1020 (1171)
Q Consensus 947 LDEpTs~LD~~t~~~i~~~l~---~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~ 1020 (1171)
|||||++||+.++..+++.|. +..+++|+|+||||++.+..||+|++|++|++++.|+++++++.. ..|.+++
T Consensus 151 LDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~-~~~~~~~ 226 (237)
T 2cbz_A 151 FDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARD-GAFAEFL 226 (237)
T ss_dssp EESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHHT-SHHHHHH
T ss_pred EeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhcc-HHHHHHH
Confidence 999999999999999999994 334589999999999998779999999999999999999998653 3454433
No 36
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=8.3e-45 Score=455.85 Aligned_cols=211 Identities=22% Similarity=0.341 Sum_probs=153.4
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHh-cC----CC---CCCce-------------
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF-RI----VE---LERGR------------- 844 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~-g~----~~---p~~G~------------- 844 (1171)
.++++|++. .+|+||||+|++||++||+|+||||||||+++|+ |. +. +..|.
T Consensus 647 ~L~v~~l~~-------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~ 719 (993)
T 2ygr_A 647 QLTVVGARE-------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKL 719 (993)
T ss_dssp EEEEEEECS-------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEE
T ss_pred eEEEecCcc-------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceE
Confidence 489999852 3799999999999999999999999999999853 22 22 23443
Q ss_pred EEECCEecCCC---ChH-------HH---------hhheEEEcCCcccc-------------------------------
Q 001055 845 ILIDGFDIAKF---GLM-------DL---------RKILGIIPQSPVLF------------------------------- 874 (1171)
Q Consensus 845 I~i~g~~i~~~---~~~-------~~---------r~~i~~v~Q~~~lf------------------------------- 874 (1171)
|.+++.++... ++. .+ .+.+||+||...+-
T Consensus 720 i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~ 799 (993)
T 2ygr_A 720 VRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEV 799 (993)
T ss_dssp ECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTT
T ss_pred EEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehh
Confidence 45555555321 111 11 23468888854220
Q ss_pred ------------------------cccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcch-hhhcCCCCCChhHH
Q 001055 875 ------------------------SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDA-QVSEAGENFSVGQR 929 (1171)
Q Consensus 875 ------------------------~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~-~~~~~~~~LSgGqk 929 (1171)
..|+.+++.++.... .+ ....+.++.+ |+.. ..++...+||||||
T Consensus 800 c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~~--~~------~~~~~~L~~l--gL~~~~l~~~~~~LSGGek 869 (993)
T 2ygr_A 800 CQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPIA--GV------HRYLRTLVDV--GLGYVRLGQPAPTLSGGEA 869 (993)
T ss_dssp TTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTCH--HH------HHHHHHHHHT--TGGGSBTTCCGGGSCHHHH
T ss_pred ccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcch--HH------HHHHHHHHHc--CCCcccccCccccCCHHHH
Confidence 012222222221110 00 1123445553 5655 56777889999999
Q ss_pred HHHHHHHHhccCC---CEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhhcCEEEEE------eCcEE
Q 001055 930 QLLSLSRALLRRS---KILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLL------DSGRV 999 (1171)
Q Consensus 930 qrl~lArall~~p---~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~vl------~~G~i 999 (1171)
|||+|||+|+++| +||||||||+|||+.+.+.+++.|+++. .+.|||+||||++++..||+|++| ++|+|
T Consensus 870 QRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg~~~G~I 949 (993)
T 2ygr_A 870 QRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGGGTV 949 (993)
T ss_dssp HHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSTTSCSEE
T ss_pred HHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcCCCCCEE
Confidence 9999999999875 9999999999999999999999998875 589999999999998779999999 68999
Q ss_pred EEecChhHHhhcCC
Q 001055 1000 LEYDTPEELLSNEG 1013 (1171)
Q Consensus 1000 ~~~g~~~el~~~~~ 1013 (1171)
++.|+++++.+...
T Consensus 950 v~~G~~~el~~~~~ 963 (993)
T 2ygr_A 950 VAQGTPEDVAAVPA 963 (993)
T ss_dssp EEEECHHHHHHCTT
T ss_pred EEecCHHHHHhCCH
Confidence 99999999987543
No 37
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=8.1e-46 Score=412.29 Aligned_cols=218 Identities=27% Similarity=0.497 Sum_probs=184.6
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecC--CCChHHHhhh
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA--KFGLMDLRKI 863 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~--~~~~~~~r~~ 863 (1171)
.|+++||+++|++. .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+.
T Consensus 7 ~l~i~~ls~~y~~~-~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 85 (275)
T 3gfo_A 7 ILKVEELNYNYSDG-THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES 85 (275)
T ss_dssp EEEEEEEEEECTTS-CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred EEEEEEEEEEECCC-CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence 49999999999754 35999999999999999999999999999999999999999999999999984 2234467889
Q ss_pred eEEEcCCc--ccccccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 864 LGIIPQSP--VLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 864 i~~v~Q~~--~lf~~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
||||||+| .+|..||++|+.+.. .....+..+. +.+.++. .|++...+..+.+|||||||||+|||||
T Consensus 86 ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~--~~L~~~~~~~~~~LSgGqkQRv~iAraL 158 (275)
T 3gfo_A 86 IGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKR-----VDNALKR--TGIEHLKDKPTHCLSFGQKKRVAIAGVL 158 (275)
T ss_dssp EEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHH-----HHHHHHH--TTCGGGTTSBGGGSCHHHHHHHHHHHHH
T ss_pred EEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHH--cCCchhhcCCcccCCHHHHHHHHHHHHH
Confidence 99999998 477789999996421 2233322221 2233333 3555666677788999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-C-CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEF-K-SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
+.+|++|||||||++||+.+...+++.|+++. + ++|||+||||++.+.. ||||++|++|++++.|++++++..
T Consensus 159 ~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 159 VMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999875 3 8999999999999987 999999999999999999999754
No 38
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4.1e-45 Score=400.47 Aligned_cols=217 Identities=21% Similarity=0.375 Sum_probs=185.5
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH-hhhe
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL-RKIL 864 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~-r~~i 864 (1171)
.++++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+ |+.|
T Consensus 6 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 83 (240)
T 1ji0_A 6 VLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred eEEEEeEEEEECC--eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCE
Confidence 4899999999975 369999999999999999999999999999999999999999999999999988776655 4559
Q ss_pred EEEcCCcccccc-cHHhhccCCC--CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001055 865 GIIPQSPVLFSG-TVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 865 ~~v~Q~~~lf~~-tv~~nl~~~~--~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 941 (1171)
||+||++.+|.. |++||+.+.. .....+..+. +.+.++.++ |++...++.+.+|||||||||+|||||+.+
T Consensus 84 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~~ 157 (240)
T 1ji0_A 84 ALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRD-----LEWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMSR 157 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHH-----HHHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTTC
T ss_pred EEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHH-----HHHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 999999999876 9999997532 1111222221 233444443 355556677889999999999999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
|++|||||||++||+.+++.+++.|+++. .++|||+||||++.+.. ||+|++|++|++++.|+++++.+
T Consensus 158 p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 158 PKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228 (240)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHT
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhc
Confidence 99999999999999999999999999875 58999999999998866 99999999999999999999874
No 39
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=3.1e-45 Score=399.97 Aligned_cols=216 Identities=23% Similarity=0.320 Sum_probs=178.8
Q ss_pred EEEEeeEEEeCCCC--CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH----
Q 001055 787 IKFEDVVLRYRPEL--PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL---- 860 (1171)
Q Consensus 787 i~~~~vs~~y~~~~--~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~---- 860 (1171)
|+++||+++|+... .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999997432 259999999999999999999999999999999999999999999999999998887654
Q ss_pred hhheEEEcCCcccccc-cHHhhccCC---C---CCCHHHHHHHHHHhcHHHHHHHccCCcchh-hhcCCCCCChhHHHHH
Q 001055 861 RKILGIIPQSPVLFSG-TVRFNLDPF---S---EHSDADLWEALERAHLKDAIRRNSLGLDAQ-VSEAGENFSVGQRQLL 932 (1171)
Q Consensus 861 r~~i~~v~Q~~~lf~~-tv~~nl~~~---~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~-~~~~~~~LSgGqkqrl 932 (1171)
|+.||||||++.+|.. ||++|+.+. . ....++..+ .+.+.++. .|+... .+..+.+|||||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~-----~~~~~l~~--~~l~~~~~~~~~~~LSgGq~QRv 154 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRK-----RALECLKM--AELEERFANHKPNQLSGGQQQRV 154 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHH-----HHHHHHHH--TTCCGGGTTCCGGGSCHHHHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHH-----HHHHHHHH--CCCChhhhhCChhhCCHHHHHHH
Confidence 4569999999999876 999998531 1 222222211 12223333 244443 3666788999999999
Q ss_pred HHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHh
Q 001055 933 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 933 ~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
+|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|||+||||++.+..||||++|++|+|++.++++++.
T Consensus 155 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 155 AIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGFD 233 (235)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC---
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhhc
Confidence 999999999999999999999999999999999998753 89999999999977669999999999999999887764
No 40
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.1e-44 Score=401.04 Aligned_cols=219 Identities=26% Similarity=0.435 Sum_probs=186.1
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecC--CCChHHHhhh
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA--KFGLMDLRKI 863 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~--~~~~~~~r~~ 863 (1171)
.|+++||+++|++. ++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ......+|++
T Consensus 24 ~l~i~~l~~~y~~~--~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 24 MIDVHQLKKSFGSL--EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp SEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred eEEEEeEEEEECCE--EEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence 49999999999643 6999999999999999999999999999999999999999999999999985 3344567888
Q ss_pred eEEEcCCcccccc-cHHhhccCCC----CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 864 LGIIPQSPVLFSG-TVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 864 i~~v~Q~~~lf~~-tv~~nl~~~~----~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
||||||++.+|.. ||++|+.+.. .....+.. ..+.+.++. .|++...+..+.+|||||||||+|||||
T Consensus 102 i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~--~~L~~~~~~~~~~LSgGqkQRv~lAraL 174 (263)
T 2olj_A 102 VGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAE-----AKAMELLDK--VGLKDKAHAYPDSLSGGQAQRVAIARAL 174 (263)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHH-----HHHHHHHHH--TTCGGGTTSCGGGSCHHHHHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHH--CCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 9999999998876 9999996521 22222111 112334444 3565666677789999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCC
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 1013 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~ 1013 (1171)
+.+|++|||||||++||+.+++.+++.|+++. +++|||+||||++.+.. ||+|++|++|++++.|+++++++.+.
T Consensus 175 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 251 (263)
T 2olj_A 175 AMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQ 251 (263)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCC
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcc
Confidence 99999999999999999999999999999875 47899999999999986 99999999999999999999986543
No 41
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=5.9e-45 Score=416.67 Aligned_cols=219 Identities=24% Similarity=0.378 Sum_probs=185.3
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCC--ChHHHhhh
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF--GLMDLRKI 863 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~--~~~~~r~~ 863 (1171)
.|+++||+++|++. ++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .....+++
T Consensus 4 ~l~i~~ls~~y~~~--~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ 81 (359)
T 3fvq_A 4 ALHIGHLSKSFQNT--PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERR 81 (359)
T ss_dssp CEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSC
T ss_pred EEEEEeEEEEECCE--EEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCC
Confidence 38999999999753 699999999999999999999999999999999999999999999999998321 22235678
Q ss_pred eEEEcCCcccccc-cHHhhccCCCC---CCH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001055 864 LGIIPQSPVLFSG-TVRFNLDPFSE---HSD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 935 (1171)
Q Consensus 864 i~~v~Q~~~lf~~-tv~~nl~~~~~---~~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 935 (1171)
||||||++.+|.. ||++|+.+... ... +++.++++.+ |++...++...+|||||||||+||
T Consensus 82 ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~-----------gL~~~~~r~~~~LSGGq~QRValA 150 (359)
T 3fvq_A 82 LGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELT-----------GISELAGRYPHELSGGQQQRAALA 150 (359)
T ss_dssp CEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHH-----------TCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHc-----------CCchHhcCChhhCCHHHHHHHHHH
Confidence 9999999999965 99999976422 111 2233444443 455556666788999999999999
Q ss_pred HHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcC
Q 001055 936 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012 (1171)
Q Consensus 936 rall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~ 1012 (1171)
|||+.+|++||||||||+||+.++..+++.|.+.. .+.|+|+||||++++.. ||||++|++|+|++.|+|+++..++
T Consensus 151 rAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p 230 (359)
T 3fvq_A 151 RALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQP 230 (359)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCc
Confidence 99999999999999999999999999998776653 48999999999999877 9999999999999999999999876
Q ss_pred CChHH
Q 001055 1013 GSSFS 1017 (1171)
Q Consensus 1013 ~~~~~ 1017 (1171)
...+.
T Consensus 231 ~~~~~ 235 (359)
T 3fvq_A 231 ADLDA 235 (359)
T ss_dssp SCHHH
T ss_pred ccHHH
Confidence 54443
No 42
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=8.5e-45 Score=403.10 Aligned_cols=212 Identities=23% Similarity=0.339 Sum_probs=185.4
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++||+++|++. ++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 11 ~l~~~~l~~~~~~~--~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~ 88 (266)
T 4g1u_C 11 LLEASHLHYHVQQQ--ALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA 88 (266)
T ss_dssp EEEEEEEEEEETTE--EEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred eEEEEeEEEEeCCe--eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE
Confidence 49999999999754 7999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEcCCccc-ccccHHhhccCCCC-----CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001055 866 IIPQSPVL-FSGTVRFNLDPFSE-----HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 939 (1171)
Q Consensus 866 ~v~Q~~~l-f~~tv~~nl~~~~~-----~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 939 (1171)
|+||++.+ |..||++|+.+... ...+.+.++++.. |+....+....+|||||||||+|||||+
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGq~QRv~iAraL~ 157 (266)
T 4g1u_C 89 VMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQT-----------DCLALAQRDYRVLSGGEQQRVQLARVLA 157 (266)
T ss_dssp EECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHT-----------TCSTTTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred EEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHc-----------CChhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 99999976 46699999965321 1123344444443 3444445556789999999999999999
Q ss_pred c------CCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 940 R------RSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 940 ~------~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
+ +|++|||||||+|||+.+...+.+.|+++.+ ++|||+||||++.+.. ||||++|++|++++.|++++++.
T Consensus 158 ~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 158 QLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237 (266)
T ss_dssp HTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCC
T ss_pred cccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhC
Confidence 9 9999999999999999999999999998753 4699999999999986 99999999999999999999874
No 43
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=2.4e-44 Score=391.66 Aligned_cols=216 Identities=35% Similarity=0.698 Sum_probs=190.7
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcc
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNA 241 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~ 241 (1171)
.|+++|++|+|+. +++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+. +.+.|+|+||+|++|+.
T Consensus 6 ~l~~~~l~~~y~~-~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~-~~g~i~~v~q~~~~~~~ 83 (229)
T 2pze_A 6 EVVMENVTAFWEE-GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK-HSGRISFCSQFSWIMPG 83 (229)
T ss_dssp EEEEEEEEECSST-TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE-ECSCEEEECSSCCCCSB
T ss_pred eEEEEEEEEEeCC-CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEE-ECCEEEEEecCCcccCC
Confidence 5999999999963 246899999999999999999999999999999999999999987654 45679999999999888
Q ss_pred cHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCH
Q 001055 242 TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 321 (1171)
Q Consensus 242 Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~ 321 (1171)
||+||+.++......++.+.++.+++.+.++.++.++.+.+++.+.+|||||||||+|||||+.+|+++||||||++||+
T Consensus 84 tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~ 163 (229)
T 2pze_A 84 TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDV 163 (229)
T ss_dssp CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCH
T ss_pred CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCH
Confidence 99999999865455556667788899888888888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcch
Q 001055 322 HVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGE 379 (1171)
Q Consensus 322 ~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 379 (1171)
.+++.+++.++....+++|+|+||||++++..||++++|++|++++.|+++++.+..+
T Consensus 164 ~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 221 (229)
T 2pze_A 164 LTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQP 221 (229)
T ss_dssp HHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC--
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhcCh
Confidence 9999999864333335899999999999988899999999999999999998876533
No 44
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=5.1e-44 Score=393.10 Aligned_cols=223 Identities=29% Similarity=0.463 Sum_probs=197.5
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 229 (1171)
.|+++|++|+|+. +++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+.. .+..|
T Consensus 7 ~~~~~~l~~~y~~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 7 DITFRNIRFRYKP-DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEESST-TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred ceeEEEEEEEeCC-CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 5899999999942 1357999999999999999999999999999999999999999876532 12359
Q ss_pred EEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCC
Q 001055 230 AYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 308 (1171)
Q Consensus 230 ~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~ 308 (1171)
||+||++.+|+.||+|||.++.. .+.+++.++++.+++.+.++.+|.+..+.+++.+.+|||||||||+|||||+.+|+
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ 165 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 165 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999988899999998743 34567778889999999999999888899999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhc-chHHHHHHH
Q 001055 309 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN-GELFQKLME 386 (1171)
Q Consensus 309 vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~ 386 (1171)
++||||||++||+.+++.+++.+.+.. +|+|+|+||||++.+..||++++|++|++++.|+++++... .+.|..++.
T Consensus 166 lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~ 243 (247)
T 2ff7_A 166 ILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 243 (247)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHH
Confidence 999999999999999999999877663 58999999999999888999999999999999999998766 556665543
No 45
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.7e-44 Score=400.30 Aligned_cols=219 Identities=25% Similarity=0.368 Sum_probs=183.9
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCC----------C
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK----------F 855 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~----------~ 855 (1171)
.|+++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .
T Consensus 6 ~l~i~~l~~~y~~~--~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 6 KLHVIDLHKRYGGH--EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp CEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred eEEEeeEEEEECCE--EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence 39999999999643 69999999999999999999999999999999999999999999999999861 3
Q ss_pred Ch---HHHhhheEEEcCCcccccc-cHHhhccCCC----CCCHHHHHHHHHHhcHHHHHHHccCCcchh-hhcCCCCCCh
Q 001055 856 GL---MDLRKILGIIPQSPVLFSG-TVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQ-VSEAGENFSV 926 (1171)
Q Consensus 856 ~~---~~~r~~i~~v~Q~~~lf~~-tv~~nl~~~~----~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~-~~~~~~~LSg 926 (1171)
+. ..+|+.||||||++.+|.. ||++|+.+.. .....+.. ..+.+.++.+ |++.. .+....+|||
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~L~~~~~~~~~~~LSg 156 (262)
T 1b0u_A 84 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDAR-----ERALKYLAKV--GIDERAQGKYPVHLSG 156 (262)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHH-----HHHHHHHHHT--TCCHHHHTSCGGGSCH
T ss_pred ChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHH-----HHHHHHHHHc--CCCchhhcCCcccCCH
Confidence 33 3467789999999988876 9999996521 12221111 1123344442 55555 5666778999
Q ss_pred hHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecC
Q 001055 927 GQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDT 1004 (1171)
Q Consensus 927 Gqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~ 1004 (1171)
||||||+|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|||+||||++.+.. ||+|++|++|++++.|+
T Consensus 157 Gq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~ 236 (262)
T 1b0u_A 157 GQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGD 236 (262)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999998875 47899999999999976 99999999999999999
Q ss_pred hhHHhhcCC
Q 001055 1005 PEELLSNEG 1013 (1171)
Q Consensus 1005 ~~el~~~~~ 1013 (1171)
++++...+.
T Consensus 237 ~~~~~~~~~ 245 (262)
T 1b0u_A 237 PEQVFGNPQ 245 (262)
T ss_dssp HHHHHHSCC
T ss_pred HHHHHhCcc
Confidence 999986543
No 46
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=2e-44 Score=414.85 Aligned_cols=220 Identities=22% Similarity=0.335 Sum_probs=189.1
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++||+++|++. ++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. ++.|||
T Consensus 4 l~~~~l~~~yg~~--~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig~ 79 (381)
T 3rlf_A 4 VQLQNVTKAWGEV--VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGM 79 (381)
T ss_dssp EEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEEE
T ss_pred EEEEeEEEEECCE--EEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEEE
Confidence 8999999999753 699999999999999999999999999999999999999999999999999887764 467999
Q ss_pred EcCCcccccc-cHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 867 IPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
|||++.+|.. ||++|+.+.. .....+..+ .+.+.++. .|++...++...+|||||||||+|||||+.+|
T Consensus 80 VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~-----~v~~~l~~--~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P 152 (381)
T 3rlf_A 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQ-----RVNQVAEV--LQLAHLLDRKPKALSGGQRQRVAIGRTLVAEP 152 (381)
T ss_dssp ECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHH-----HHHHHHHH--TTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCC
T ss_pred EecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHH--cCCchhhcCChhHCCHHHHHHHHHHHHHHcCC
Confidence 9999999965 9999997531 222322221 12233333 35566666777899999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCChHH
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSFS 1017 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~~ 1017 (1171)
+||||||||++||+.++..+.+.|+++.+ +.|+|+||||++++.. ||||++|++|+|++.|+++++...+...|.
T Consensus 153 ~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~~~~v 230 (381)
T 3rlf_A 153 SVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFV 230 (381)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHH
T ss_pred CEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCccHHH
Confidence 99999999999999999999999998753 7999999999999877 999999999999999999999987665554
No 47
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=4.7e-44 Score=391.11 Aligned_cols=223 Identities=51% Similarity=0.902 Sum_probs=195.4
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcc
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNA 241 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~ 241 (1171)
.|+++|++|+|+. .++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|.+. +.+.|||+||+|+++..
T Consensus 3 ~l~~~~l~~~y~~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~-~~g~i~~v~Q~~~~~~~ 80 (237)
T 2cbz_A 3 SITVRNATFTWAR-SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA-IKGSVAYVPQQAWIQND 80 (237)
T ss_dssp CEEEEEEEEESCT-TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEE-ECSCEEEECSSCCCCSE
T ss_pred eEEEEEEEEEeCC-CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE-ECCEEEEEcCCCcCCCc
Confidence 4899999999963 246799999999999999999999999999999999999999987654 56679999999998899
Q ss_pred cHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCH
Q 001055 242 TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 321 (1171)
Q Consensus 242 Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~ 321 (1171)
||+|||.++.....+...++.+.+++.+.+..++.++.+.++..+.+|||||||||+|||||+.+|+++||||||++||+
T Consensus 81 tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~ 160 (237)
T 2cbz_A 81 SLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA 160 (237)
T ss_dssp EHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCH
T ss_pred CHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCH
Confidence 99999999765444456677788888888888888888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--hhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHH
Q 001055 322 HVGRQVFDRCI--RGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 386 (1171)
Q Consensus 322 ~~~~~l~~~l~--~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 386 (1171)
.+++.+++.+. +...+|+|+|+||||++++..||++++|++|++++.|+++++.+....|..+..
T Consensus 161 ~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 227 (237)
T 2cbz_A 161 HVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLR 227 (237)
T ss_dssp HHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhccHHHHHHHH
Confidence 99999998764 222358999999999999888999999999999999999998776666665544
No 48
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.7e-44 Score=395.47 Aligned_cols=217 Identities=24% Similarity=0.434 Sum_probs=184.6
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhhe
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 864 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 864 (1171)
+.|+++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+.|
T Consensus 14 ~~l~i~~l~~~y~~~--~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~i 90 (256)
T 1vpl_A 14 GAVVVKDLRKRIGKK--EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLI 90 (256)
T ss_dssp CCEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTE
T ss_pred CeEEEEEEEEEECCE--EEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhcE
Confidence 459999999999643 69999999999999999999999999999999999999999999999999876 456678889
Q ss_pred EEEcCCcccccc-cHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 865 GIIPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 865 ~~v~Q~~~lf~~-tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
||+||++.+|.. ||++|+.++. .....+.. ..+.+.++.+ |++...+..+.+|||||||||+|||||+.
T Consensus 91 ~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~-----~~~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAraL~~ 163 (256)
T 1vpl_A 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIE-----EMVERATEIA--GLGEKIKDRVSTYSKGMVRKLLIARALMV 163 (256)
T ss_dssp EEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHH-----HHHHHHHHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHTT
T ss_pred EEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHH-----HHHHHHHHHC--CCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 999999998876 9999996531 11221111 1122333332 45555566677899999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhc
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
+|+||||||||++||+.+...+++.|+++. .++|||++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 164 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 236 (256)
T 1vpl_A 164 NPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 236 (256)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999999875 47999999999999987 999999999999999999998753
No 49
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=2.5e-44 Score=398.39 Aligned_cols=214 Identities=24% Similarity=0.305 Sum_probs=184.0
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChH-HHhhhe
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM-DLRKIL 864 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~-~~r~~i 864 (1171)
.|+++||+++|++. ++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.. .+|+.|
T Consensus 7 ~l~i~~l~~~y~~~--~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 84 (257)
T 1g6h_A 7 ILRTENIVKYFGEF--KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84 (257)
T ss_dssp EEEEEEEEEEETTE--EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEeeeEEEECCE--eeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 49999999999653 699999999999999999999999999999999999999999999999999876643 357789
Q ss_pred EEEcCCccccc-ccHHhhccCCCCC----------------CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChh
Q 001055 865 GIIPQSPVLFS-GTVRFNLDPFSEH----------------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVG 927 (1171)
Q Consensus 865 ~~v~Q~~~lf~-~tv~~nl~~~~~~----------------~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgG 927 (1171)
|||||++.+|. .||+||+.+.... ...+. ...+.+.++.+ |++...++.+.+||||
T Consensus 85 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgG 157 (257)
T 1g6h_A 85 VRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEM-----VEKAFKILEFL--KLSHLYDRKAGELSGG 157 (257)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHH-----HHHHHHHHHHT--TCGGGTTSBGGGSCHH
T ss_pred EEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHH-----HHHHHHHHHHc--CCchhhCCCchhCCHH
Confidence 99999998886 4999999653111 11111 12234555553 6777777778899999
Q ss_pred HHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecCh
Q 001055 928 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTP 1005 (1171)
Q Consensus 928 qkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~ 1005 (1171)
|||||+|||||+.+|+||||||||++||+.+.+.+++.|+++. +++|||+||||++.+.. ||+|++|++|++++.|++
T Consensus 158 qkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 237 (257)
T 1g6h_A 158 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRG 237 (257)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEES
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCH
Confidence 9999999999999999999999999999999999999999875 47999999999999876 999999999999999999
Q ss_pred hHH
Q 001055 1006 EEL 1008 (1171)
Q Consensus 1006 ~el 1008 (1171)
+++
T Consensus 238 ~~~ 240 (257)
T 1g6h_A 238 EEE 240 (257)
T ss_dssp HHH
T ss_pred HHh
Confidence 983
No 50
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=9.3e-44 Score=408.36 Aligned_cols=215 Identities=22% Similarity=0.375 Sum_probs=185.8
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. +++|||
T Consensus 4 l~~~~l~~~y~~~--~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~ 79 (359)
T 2yyz_A 4 IRVVNLKKYFGKV--KAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVGM 79 (359)
T ss_dssp EEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEE
T ss_pred EEEEEEEEEECCE--EEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEEE
Confidence 8999999999643 699999999999999999999999999999999999999999999999999877653 578999
Q ss_pred EcCCcccccc-cHHhhccCCCCC---CH----HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 867 IPQSPVLFSG-TVRFNLDPFSEH---SD----ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~~~---~~----~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
|||++.+|.. ||++|+.+.... .. +++.++++.. |++...+....+|||||||||+|||||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~-----------~L~~~~~r~~~~LSgGq~QRvalArAL 148 (359)
T 2yyz_A 80 VFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKL-----------LIDNLLDRKPTQLSGGQQQRVALARAL 148 (359)
T ss_dssp ECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHT-----------TCGGGTTSCGGGSCHHHHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 9999999965 999999764221 11 2233334333 555556666778999999999999999
Q ss_pred ccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCCh
Q 001055 939 LRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSS 1015 (1171)
Q Consensus 939 l~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~ 1015 (1171)
+.+|++||||||||+||+.+++.+++.|+++.+ +.|+|+||||++++.. ||||++|++|+|++.|+++++..++...
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~~ 228 (359)
T 2yyz_A 149 VKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNM 228 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBH
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccH
Confidence 999999999999999999999999999998753 7899999999999876 9999999999999999999998765443
Q ss_pred H
Q 001055 1016 F 1016 (1171)
Q Consensus 1016 ~ 1016 (1171)
|
T Consensus 229 ~ 229 (359)
T 2yyz_A 229 F 229 (359)
T ss_dssp H
T ss_pred H
Confidence 3
No 51
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=2e-43 Score=391.41 Aligned_cols=223 Identities=28% Similarity=0.467 Sum_probs=195.2
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 229 (1171)
.|+++|++|+|+....+++|+|+||+|++|++++|+||||||||||+++|+|+++| +|.+.. .+..|
T Consensus 17 ~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i 95 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSII 95 (260)
T ss_dssp CEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTE
T ss_pred eEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccE
Confidence 59999999999743235799999999999999999999999999999999999987 665422 23469
Q ss_pred EEEecCCCCCcccHHHHHhcCCC-CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCC
Q 001055 230 AYVPQVSWIFNATVRDNILFGSA-FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 308 (1171)
Q Consensus 230 ~~v~Q~~~l~~~Tv~eni~~g~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~ 308 (1171)
+|+||+|.+|+.||+|||.++.. ...+++.++++.+++.+.++.++.+.++.+++.+.+|||||||||+|||||+.+|+
T Consensus 96 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 175 (260)
T 2ghi_A 96 GIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPK 175 (260)
T ss_dssp EEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCC
Confidence 99999999998899999998743 34566777888899999888899888888999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHHH
Q 001055 309 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLME 386 (1171)
Q Consensus 309 vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 386 (1171)
+|||||||++||+.+++.+++.+.+.. +++|+|+||||++++..||+|++|++|++++.|+++++......|..++.
T Consensus 176 lllLDEPts~LD~~~~~~i~~~l~~l~-~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 252 (260)
T 2ghi_A 176 IVIFDEATSSLDSKTEYLFQKAVEDLR-KNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWN 252 (260)
T ss_dssp EEEEECCCCTTCHHHHHHHHHHHHHHT-TTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHH
T ss_pred EEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHHHHH
Confidence 999999999999999999999776654 48999999999999888999999999999999999998766555655543
No 52
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=3.8e-44 Score=388.73 Aligned_cols=210 Identities=21% Similarity=0.282 Sum_probs=177.4
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH---Hh-
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD---LR- 861 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~---~r- 861 (1171)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... +|
T Consensus 4 ~l~~~~l~~~y~~--~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 81 (224)
T 2pcj_A 4 ILRAENIKKVIRG--YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRN 81 (224)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHH
T ss_pred EEEEEeEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHh
Confidence 3899999999975 36999999999999999999999999999999999999999999999999998776543 34
Q ss_pred hheEEEcCCcccccc-cHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001055 862 KILGIIPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 937 (1171)
Q Consensus 862 ~~i~~v~Q~~~lf~~-tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 937 (1171)
++|+||||++.+|.. |+++|+.+.. .....+.. ..+.+.++.+ |+....+....+|||||||||+||||
T Consensus 82 ~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lara 154 (224)
T 2pcj_A 82 RKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAK-----ERGEYLLSEL--GLGDKLSRKPYELSGGEQQRVAIARA 154 (224)
T ss_dssp HHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHH-----HHHHHHHHHT--TCTTCTTCCGGGSCHHHHHHHHHHHH
T ss_pred CcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHH-----HHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 679999999988865 9999996421 11111111 1233444443 55555666778899999999999999
Q ss_pred hccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhhcCEEEEEeCcEEEEecC
Q 001055 938 LLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDT 1004 (1171)
Q Consensus 938 ll~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~ 1004 (1171)
|+.+|++|||||||++||+.+.+.+.+.|+++. +++|||+||||++.+..||+|++|++|++++.|+
T Consensus 155 l~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 155 LANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp TTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 999999999999999999999999999999875 4799999999999885599999999999999886
No 53
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=8.2e-44 Score=407.72 Aligned_cols=221 Identities=26% Similarity=0.449 Sum_probs=187.0
Q ss_pred ccEEEEeeEEEe-CCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhh
Q 001055 785 GSIKFEDVVLRY-RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 863 (1171)
Q Consensus 785 g~i~~~~vs~~y-~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 863 (1171)
..|+++||+++| ++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++ .++.
T Consensus 13 ~~l~~~~l~~~y~g~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPGG--ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTTS--TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcCC--CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 459999999999 54 369999999999999999999999999999999999999999999999999987654 4678
Q ss_pred eEEEcCCcccccc-cHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001055 864 LGIIPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 939 (1171)
Q Consensus 864 i~~v~Q~~~lf~~-tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 939 (1171)
||||||++.+|.. ||++|+.+.. .....+.. ..+.+.++. .|++...+....+|||||||||+|||||+
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~-----~~v~~~l~~--~gL~~~~~r~~~~LSGGq~QRvalArAL~ 161 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMD-----ARVRELLRF--MRLESYANRFPHELSGGQQQRVALARALA 161 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHH-----HHHHHHHHH--TTCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHH--cCChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999975 9999997521 12222211 112333333 35555666677889999999999999999
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCChH
Q 001055 940 RRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 1016 (1171)
Q Consensus 940 ~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~ 1016 (1171)
.+|++|||||||++||+.+++.+++.|+++.+ +.|+|+||||++++.. ||||++|++|+|++.|+++++..++...|
T Consensus 162 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~ 241 (355)
T 1z47_A 162 PRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLF 241 (355)
T ss_dssp TCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchH
Confidence 99999999999999999999999999998753 7999999999999877 99999999999999999999987654433
No 54
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=4.4e-44 Score=393.26 Aligned_cols=220 Identities=26% Similarity=0.480 Sum_probs=195.7
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVA 230 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~ 230 (1171)
|+++|++|+|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+.. .+..|+
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999952 357999999999999999999999999999999999999999887532 234699
Q ss_pred EEecCCCCCcccHHHHHhcC-C-CCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCC
Q 001055 231 YVPQVSWIFNATVRDNILFG-S-AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 308 (1171)
Q Consensus 231 ~v~Q~~~l~~~Tv~eni~~g-~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~ 308 (1171)
|+||++.+|+.||+|||.++ . ..+.+++.++++.+++.+.++.+|.+..+.+++.+.+|||||||||+|||||+.+|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999988999999987 3 245567788889999998888899888889999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHH
Q 001055 309 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 385 (1171)
Q Consensus 309 vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 385 (1171)
+|||||||++||+.+++.+++.+.+.. +|+|+|+||||++++..||++++|++|++++.|+++++......+..++
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 235 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYV 235 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhccHHHHHHH
Confidence 999999999999999999999877665 6899999999999988899999999999999999999876655555554
No 55
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=9.9e-44 Score=395.35 Aligned_cols=214 Identities=22% Similarity=0.338 Sum_probs=181.7
Q ss_pred EEEEeeEEEeCCCC---CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhh
Q 001055 787 IKFEDVVLRYRPEL---PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKI 863 (1171)
Q Consensus 787 i~~~~vs~~y~~~~---~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 863 (1171)
|+++||+++|+.+. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 89999999996211 3699999999999999999999999999999999999999999999999998642 67788
Q ss_pred eEEEcCCc--ccccccHHhhccCCCC------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHH
Q 001055 864 LGIIPQSP--VLFSGTVRFNLDPFSE------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLS 935 (1171)
Q Consensus 864 i~~v~Q~~--~lf~~tv~~nl~~~~~------~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lA 935 (1171)
||||||+| .++..|+++|+.+... ...+++.++++..++.. ....+....+|||||||||+||
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~---------~~~~~~~~~~LSgGq~qRv~lA 150 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDF---------DSFKDRVPFFLSGGEKRRVAIA 150 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCH---------HHHTTCCGGGSCHHHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCC---------cccccCChhhCCHHHHHHHHHH
Confidence 99999996 4567799999975321 12344555566554430 0334445568999999999999
Q ss_pred HHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcC
Q 001055 936 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012 (1171)
Q Consensus 936 rall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~ 1012 (1171)
|||+.+|+||||||||++||+.+.+.+++.|+++. +++|||+||||++.+.. ||++++|++|++++.|+++++++..
T Consensus 151 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 229 (266)
T 2yz2_A 151 SVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKY 229 (266)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHHS
T ss_pred HHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCc
Confidence 99999999999999999999999999999999875 47999999999999987 9999999999999999999987654
No 56
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.1e-43 Score=408.09 Aligned_cols=219 Identities=23% Similarity=0.390 Sum_probs=185.9
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
|+++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. +++|||
T Consensus 4 l~~~~l~~~y~~~--~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~ 79 (362)
T 2it1_A 4 IKLENIVKKFGNF--TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVGL 79 (362)
T ss_dssp EEEEEEEEESSSS--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEE
T ss_pred EEEEeEEEEECCE--EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEEE
Confidence 8999999999643 699999999999999999999999999999999999999999999999999877653 578999
Q ss_pred EcCCcccccc-cHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 867 IPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
|||++.+|.. ||++|+.+.. .....+.. ..+.+.++. .|++...+....+|||||||||+|||||+.+|
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~-----~~v~~~l~~--~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P 152 (362)
T 2it1_A 80 VFQNWALYPHMTVYKNIAFPLELRKAPREEID-----KKVREVAKM--LHIDKLLNRYPWQLSGGQQQRVAIARALVKEP 152 (362)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHH-----HHHHHHHHH--TTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHH--cCCchHhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence 9999999975 9999997521 12222211 112333333 25555556667789999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCChH
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 1016 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~ 1016 (1171)
++||||||||+||+.++..+++.|+++.+ +.|+|+||||++++.. ||||++|++|+|++.|+++++..++...|
T Consensus 153 ~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~ 229 (362)
T 2it1_A 153 EVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKYKF 229 (362)
T ss_dssp SEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchH
Confidence 99999999999999999999999998753 7999999999999876 99999999999999999999987654433
No 57
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.4e-43 Score=406.90 Aligned_cols=220 Identities=21% Similarity=0.349 Sum_probs=182.9
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.|+++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. +++||
T Consensus 11 ~l~~~~l~~~y~~~--~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 86 (372)
T 1v43_A 11 EVKLENLTKRFGNF--TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 86 (372)
T ss_dssp CEEEEEEEEEETTE--EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEE
T ss_pred eEEEEEEEEEECCE--EEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcEE
Confidence 39999999999643 699999999999999999999999999999999999999999999999999877653 57899
Q ss_pred EEcCCcccccc-cHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 941 (1171)
||||++.+|.. ||++|+.+... ....+.. ..+.+.++. .|++...+....+|||||||||+|||||+.+
T Consensus 87 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~-----~~v~~~l~~--~~L~~~~~r~~~~LSGGq~QRvalArAL~~~ 159 (372)
T 1v43_A 87 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEID-----KRVRWAAEL--LQIEELLNRYPAQLSGGQRQRVAVARAIVVE 159 (372)
T ss_dssp EEEC------CCCHHHHHHTTCC--CCCHHHHH-----HHHHHHHHH--TTCGGGTTSCTTTCCSSCHHHHHHHHHHTTC
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHH--cCChhHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999965 99999976432 2222221 112333443 3566666777789999999999999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCChH
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 1016 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~ 1016 (1171)
|++||||||||+||+.++..+++.|+++.+ +.|+|+||||++++.. ||||++|++|+|++.|+++++..++...|
T Consensus 160 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~ 237 (372)
T 1v43_A 160 PDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVF 237 (372)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHH
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccHH
Confidence 999999999999999999999999998753 7899999999999876 99999999999999999999987655444
No 58
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=3.3e-43 Score=391.70 Aligned_cols=226 Identities=26% Similarity=0.411 Sum_probs=193.9
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCc
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 228 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 228 (1171)
..|+++|++|+|+...++++|+||||+|++||+++|+||||||||||+++|+|+++|++|.+.. .+..
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 3699999999996422367999999999999999999999999999999999999999876532 1235
Q ss_pred EEEEecCCCCCcccHHHHHhcCCCC-CH-HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccC
Q 001055 229 VAYVPQVSWIFNATVRDNILFGSAF-EP-ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 306 (1171)
Q Consensus 229 i~~v~Q~~~l~~~Tv~eni~~g~~~-~~-~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~ 306 (1171)
||||||++.+|+.||+|||.++... .. ++..+..+..++.+.++.++.+..+.++..+.+|||||||||+|||||+.+
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~ 174 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRK 174 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTC
T ss_pred EEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999888999999987432 22 445556667788888888887777778888999999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHH
Q 001055 307 SDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 385 (1171)
Q Consensus 307 ~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 385 (1171)
|++|||||||++||+.+++.+++.+.+... .|+|+|+||||++++..||+|++|++|++++.|+++++......|..++
T Consensus 175 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 254 (271)
T 2ixe_A 175 PRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMV 254 (271)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCcHHHHHHH
Confidence 999999999999999999999997766543 4899999999999988899999999999999999999877666666654
Q ss_pred H
Q 001055 386 E 386 (1171)
Q Consensus 386 ~ 386 (1171)
.
T Consensus 255 ~ 255 (271)
T 2ixe_A 255 E 255 (271)
T ss_dssp H
T ss_pred H
Confidence 3
No 59
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.6e-43 Score=386.99 Aligned_cols=212 Identities=26% Similarity=0.408 Sum_probs=180.7
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++||+++|++ +|+|+||+|++ |++||+||||||||||+++|+|+++|++|+|.++|.++...+ ..|++|||
T Consensus 2 l~~~~l~~~y~~----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~ 74 (240)
T 2onk_A 2 FLKVRAEKRLGN----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGF 74 (240)
T ss_dssp CEEEEEEEEETT----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBC
T ss_pred EEEEEEEEEeCC----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEE
Confidence 689999999952 59999999999 999999999999999999999999999999999999987533 34678999
Q ss_pred EcCCcccccc-cHHhhccCCCCC-CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001055 867 IPQSPVLFSG-TVRFNLDPFSEH-SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 944 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~~~-~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 944 (1171)
|||++.+|.. |+++|+.+.... .... ....+.+.++. .|++...+....+||||||||++|||||+.+|++
T Consensus 75 v~q~~~l~~~ltv~enl~~~~~~~~~~~-----~~~~~~~~l~~--~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~l 147 (240)
T 2onk_A 75 VPQDYALFPHLSVYRNIAYGLRNVERVE-----RDRRVREMAEK--LGIAHLLDRKPARLSGGERQRVALARALVIQPRL 147 (240)
T ss_dssp CCSSCCCCTTSCHHHHHHTTCTTSCHHH-----HHHHHHHHHHT--TTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSS
T ss_pred EcCCCccCCCCcHHHHHHHHHHHcCCch-----HHHHHHHHHHH--cCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 9999998876 999999764322 1110 01123344444 3555556667788999999999999999999999
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcC
Q 001055 945 LVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNE 1012 (1171)
Q Consensus 945 LlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~ 1012 (1171)
|||||||++||+.+++.+++.|+++.+ ++|||++|||++.+.. ||+|++|++|++++.|+++++++..
T Consensus 148 llLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 148 LLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp BEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999998753 7999999999999876 9999999999999999999998654
No 60
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=6.5e-44 Score=398.47 Aligned_cols=215 Identities=22% Similarity=0.327 Sum_probs=182.8
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecC--CCChHHHhhh
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA--KFGLMDLRKI 863 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~--~~~~~~~r~~ 863 (1171)
.|+++||+++|++. ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|++
T Consensus 21 ~l~~~~l~~~y~~~--~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 98 (279)
T 2ihy_A 21 LIQLDQIGRMKQGK--TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQH 98 (279)
T ss_dssp EEEEEEEEEEETTE--EEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTT
T ss_pred eEEEEeEEEEECCE--EEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCc
Confidence 49999999999753 6999999999999999999999999999999999999999999999999987 6677778889
Q ss_pred eEEEcCCccc-ccc--cHHhhccCCCC--------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH
Q 001055 864 LGIIPQSPVL-FSG--TVRFNLDPFSE--------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL 932 (1171)
Q Consensus 864 i~~v~Q~~~l-f~~--tv~~nl~~~~~--------~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl 932 (1171)
||||||++.+ |.. ||+||+.+... ..++. ...+.+.++. .|++...+....+|||||||||
T Consensus 99 i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~------~~~~~~~l~~--~gl~~~~~~~~~~LSgGqkqRv 170 (279)
T 2ihy_A 99 IGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI------RNEAHQLLKL--VGMSAKAQQYIGYLSTGEKQRV 170 (279)
T ss_dssp EEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHH------HHHHHHHHHH--TTCGGGTTSBGGGSCHHHHHHH
T ss_pred EEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHH------HHHHHHHHHH--cCChhHhcCChhhCCHHHHHHH
Confidence 9999999864 444 99999975321 11111 1112334444 3566666677788999999999
Q ss_pred HHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEE--EEEecChhhhhh-cCEEEEEeCcEEEEecChhHH
Q 001055 933 SLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTM--LIIAHRLNTIID-CDRILLLDSGRVLEYDTPEEL 1008 (1171)
Q Consensus 933 ~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tv--i~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el 1008 (1171)
+|||||+.+|++|||||||++||+.+++.+++.|+++.+ ++|| |+||||++.+.. ||+|++|++|++++.|+++++
T Consensus 171 ~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 171 MIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDI 250 (279)
T ss_dssp HHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHH
T ss_pred HHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999988754 7899 999999999876 999999999999999999988
Q ss_pred hh
Q 001055 1009 LS 1010 (1171)
Q Consensus 1009 ~~ 1010 (1171)
.+
T Consensus 251 ~~ 252 (279)
T 2ihy_A 251 LT 252 (279)
T ss_dssp CS
T ss_pred hc
Confidence 64
No 61
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.2e-43 Score=407.83 Aligned_cols=221 Identities=22% Similarity=0.361 Sum_probs=185.8
Q ss_pred EEEEeeEEEeCCCCCC--cceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCC---hHHHh
Q 001055 787 IKFEDVVLRYRPELPP--VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG---LMDLR 861 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~--~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~---~~~~r 861 (1171)
|+++||+++|++. + +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ....+
T Consensus 4 l~i~~l~~~y~~~--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~ 81 (353)
T 1oxx_K 4 IIVKNVSKVFKKG--KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (353)
T ss_dssp EEEEEEEEEEGGG--TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEeEEEEECCE--eeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhh
Confidence 8999999999653 6 999999999999999999999999999999999999999999999999986521 22346
Q ss_pred hheEEEcCCcccccc-cHHhhccCCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001055 862 KILGIIPQSPVLFSG-TVRFNLDPFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 937 (1171)
Q Consensus 862 ~~i~~v~Q~~~lf~~-tv~~nl~~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 937 (1171)
++||||||++.+|.. ||++|+.+... ....+.. ..+.+.++. .|++...+....+|||||||||+||||
T Consensus 82 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~-----~~v~~~l~~--~~L~~~~~~~~~~LSGGq~QRvalAra 154 (353)
T 1oxx_K 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIR-----KRVEEVAKI--LDIHHVLNHFPRELSGAQQQRVALARA 154 (353)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHH-----HHHHHHHHH--TTCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHH--cCCchHhcCChhhCCHHHHHHHHHHHH
Confidence 789999999999976 99999975322 2222211 112233333 355555666677899999999999999
Q ss_pred hccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCC
Q 001055 938 LLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGS 1014 (1171)
Q Consensus 938 ll~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~ 1014 (1171)
|+.+|++|||||||++||+.++..+++.|+++.+ +.|+|+||||++++.. ||||++|++|+|++.|+++++..++..
T Consensus 155 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~ 234 (353)
T 1oxx_K 155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVS 234 (353)
T ss_dssp HTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSS
T ss_pred HHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccc
Confidence 9999999999999999999999999999998753 7999999999999876 999999999999999999999876554
Q ss_pred hH
Q 001055 1015 SF 1016 (1171)
Q Consensus 1015 ~~ 1016 (1171)
.|
T Consensus 235 ~~ 236 (353)
T 1oxx_K 235 IQ 236 (353)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 62
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=2.9e-43 Score=403.13 Aligned_cols=214 Identities=25% Similarity=0.364 Sum_probs=184.8
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++||+++|++ . +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++ .+++|||
T Consensus 2 l~~~~l~~~y~~--~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~ 76 (348)
T 3d31_A 2 IEIESLSRKWKN--F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAF 76 (348)
T ss_dssp EEEEEEEEECSS--C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEE
T ss_pred EEEEEEEEEECC--E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEE
Confidence 789999999964 3 9999999999999999999999999999999999999999999999999987554 4678999
Q ss_pred EcCCcccccc-cHHhhccCCC----CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001055 867 IPQSPVLFSG-TVRFNLDPFS----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 867 v~Q~~~lf~~-tv~~nl~~~~----~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 941 (1171)
|||++.+|.. ||++|+.+.. ...++++.++++.. |++...+....+|||||||||+|||||+.+
T Consensus 77 v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~-----------~L~~~~~~~~~~LSgGq~QRvalAraL~~~ 145 (348)
T 3d31_A 77 VYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL-----------KIEHLLDRNPLTLSGGEQQRVALARALVTN 145 (348)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHT-----------TCTTTTTSCGGGSCHHHHHHHHHHHHTTSC
T ss_pred EecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHc-----------CCchHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 9999999976 9999997521 11123344444443 444555666678999999999999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCCChH
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEGSSF 1016 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~~~~ 1016 (1171)
|++|||||||++||+.+++.+++.|+++. .+.|+|+||||++++.. ||||++|++|+|++.|+++++..++...|
T Consensus 146 P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~ 223 (348)
T 3d31_A 146 PKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (348)
T ss_dssp CSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHH
Confidence 99999999999999999999999999875 37999999999999876 99999999999999999999987665444
No 63
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.4e-43 Score=409.70 Aligned_cols=219 Identities=20% Similarity=0.346 Sum_probs=184.7
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCC------CChHHH
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK------FGLMDL 860 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~------~~~~~~ 860 (1171)
|+++||+++|++. ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .++ .
T Consensus 4 l~~~~l~~~y~~~--~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~--~ 79 (372)
T 1g29_1 4 VRLVDVWKVFGEV--TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP--K 79 (372)
T ss_dssp EEEEEEEEEETTE--EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--G
T ss_pred EEEEeEEEEECCE--EEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--h
Confidence 8999999999643 69999999999999999999999999999999999999999999999999865 444 3
Q ss_pred hhheEEEcCCcccccc-cHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001055 861 RKILGIIPQSPVLFSG-TVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 936 (1171)
Q Consensus 861 r~~i~~v~Q~~~lf~~-tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 936 (1171)
+++||||||++.+|.. ||++|+.+.. .....+.. ..+.+.++.+ |++...+....+|||||||||+|||
T Consensus 80 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~-----~~v~~~l~~~--~L~~~~~r~~~~LSGGq~QRvalAr 152 (372)
T 1g29_1 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEID-----QRVREVAELL--GLTELLNRKPRELSGGQRQRVALGR 152 (372)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHH-----HHHHHHHHHH--TCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHC--CCchHhcCCcccCCHHHHHHHHHHH
Confidence 5789999999999965 9999997531 12222211 1122333332 4555556667789999999999999
Q ss_pred HhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhhcCC
Q 001055 937 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLSNEG 1013 (1171)
Q Consensus 937 all~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~~~~ 1013 (1171)
||+.+|++||||||||+||+.++..+++.|+++.+ +.|+|+||||++++.. ||||++|++|+|++.|+++++..++.
T Consensus 153 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~ 232 (372)
T 1g29_1 153 AIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPA 232 (372)
T ss_dssp HHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred HHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhCcc
Confidence 99999999999999999999999999999988753 7899999999999876 99999999999999999999987655
Q ss_pred ChH
Q 001055 1014 SSF 1016 (1171)
Q Consensus 1014 ~~~ 1016 (1171)
..|
T Consensus 233 ~~~ 235 (372)
T 1g29_1 233 NTF 235 (372)
T ss_dssp BHH
T ss_pred cHH
Confidence 443
No 64
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=5.5e-43 Score=384.52 Aligned_cols=207 Identities=22% Similarity=0.318 Sum_probs=182.2
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++||+++ ++|+|+||+|++||++||+||||||||||+++|+|+++|+ |+|.++|.++...+...+|++|+
T Consensus 4 ~l~~~~l~~~------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 4 VMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEEET------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEEceEEE------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 3899999986 4899999999999999999999999999999999999999 99999999998888888899999
Q ss_pred EEcCCcccccc-cHHhhccCCCC--CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFSE--HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~~--~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
|+||++.+|.. ||+||+.+... ..++++.++++.. |++...+..+.+||||||||++|||||+.+|
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p 145 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL-----------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQIT 145 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHT-----------TCGGGTTSBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred EECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHc-----------CChhHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 99999988865 99999976431 1244455555554 4444455666789999999999999999999
Q ss_pred C-------EEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 943 K-------ILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 943 ~-------iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
+ +|||||||++||+.+++.+.+.|+++. +++|||++|||++.+.. ||++++|++|++++.|+++++.+
T Consensus 146 ~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 146 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp TTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9 999999999999999999999999875 47899999999999866 99999999999999999999864
No 65
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=5.6e-43 Score=385.97 Aligned_cols=212 Identities=25% Similarity=0.350 Sum_probs=172.7
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCceEEECCEecCCCChHHH-hhh
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI--VELERGRILIDGFDIAKFGLMDL-RKI 863 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~--~~p~~G~I~i~g~~i~~~~~~~~-r~~ 863 (1171)
++++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+ ++|++|+|.++|.++...+.... |..
T Consensus 4 l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (250)
T 2d2e_A 4 LEIRDLWASIDG--ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKG 81 (250)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTT
T ss_pred EEEEeEEEEECC--EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCc
Confidence 899999999965 3699999999999999999999999999999999999 89999999999999988776655 456
Q ss_pred eEEEcCCcccccc-cHHhhccCCC----C--CCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCC-CChhHHHHHHH
Q 001055 864 LGIIPQSPVLFSG-TVRFNLDPFS----E--HSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGEN-FSVGQRQLLSL 934 (1171)
Q Consensus 864 i~~v~Q~~~lf~~-tv~~nl~~~~----~--~~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~-LSgGqkqrl~l 934 (1171)
++|+||++.+|.. |+++|+.+.. . ....+.. ..+.+.++.+ |++ ...+....+ |||||||||+|
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~~LSgGqkQrv~i 154 (250)
T 2d2e_A 82 LFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFW-----TKVKKALELL--DWDESYLSRYLNEGFSGGEKKRNEI 154 (250)
T ss_dssp BCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHH-----HHHHHHHHHH--TCCGGGGGSBTTCC----HHHHHHH
T ss_pred EEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHH-----HHHHHHHHHc--CCChhHhcCCcccCCCHHHHHHHHH
Confidence 9999999998876 9999986421 0 1111111 1123344443 453 344555667 99999999999
Q ss_pred HHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhh--cCEEEEEeCcEEEEecChhH
Q 001055 935 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID--CDRILLLDSGRVLEYDTPEE 1007 (1171)
Q Consensus 935 Arall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~--~d~i~vl~~G~i~~~g~~~e 1007 (1171)
||||+++|+||||||||++||+.+.+.+.+.|+++.+ ++|||+||||++.+.. ||+|++|++|++++.|+++.
T Consensus 155 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 155 LQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp HHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred HHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 9999999999999999999999999999999999854 7899999999999886 59999999999999999873
No 66
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=8.8e-43 Score=390.84 Aligned_cols=208 Identities=25% Similarity=0.390 Sum_probs=174.4
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhhe
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 864 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 864 (1171)
+.++++||++.+ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 39 ~~l~~~~l~~~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~i 101 (290)
T 2bbs_A 39 DSLSFSNFSLLG----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 101 (290)
T ss_dssp -----------C----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------CE
T ss_pred ceEEEEEEEEcC----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------EE
Confidence 459999999864 2699999999999999999999999999999999999999999999997 49
Q ss_pred EEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001055 865 GIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 944 (1171)
Q Consensus 865 ~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 944 (1171)
+|+||++.+|..||++|+. .....+..+.++++..++.+.+..+|.+.++.+++.+.+||||||||++|||||+++|++
T Consensus 102 ~~v~Q~~~l~~~tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~l 180 (290)
T 2bbs_A 102 SFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL 180 (290)
T ss_dssp EEECSSCCCCSSBHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSE
T ss_pred EEEeCCCccCcccHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCE
Confidence 9999999999899999997 322334455667777888899999998888888888999999999999999999999999
Q ss_pred EEEecCCcCCCHHHHHHHHHHH-HHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhh
Q 001055 945 LVLDEATAAVDVRTDALIQKTI-REEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 945 LlLDEpTs~LD~~t~~~i~~~l-~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
|||||||++||+.++..+++.+ ++..+++|||+|||+++.+..||+|++|++|++++.|++++++.
T Consensus 181 llLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 181 YLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp EEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhh
Confidence 9999999999999999999974 44445899999999999987799999999999999999999875
No 67
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.7e-42 Score=383.31 Aligned_cols=206 Identities=22% Similarity=0.291 Sum_probs=177.8
Q ss_pred EEEEeeEEEeCCC--CCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhhe
Q 001055 787 IKFEDVVLRYRPE--LPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 864 (1171)
Q Consensus 787 i~~~~vs~~y~~~--~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 864 (1171)
++++||+++|++. ..++|+|+||+|+ ||++||+||||||||||+++|+|++ |++|+|.++|.++... .. |++|
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999641 0269999999999 9999999999999999999999999 9999999999998754 23 7789
Q ss_pred E-EEcCCcccccccHHhhccCCC---CCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHHHHHHhc
Q 001055 865 G-IIPQSPVLFSGTVRFNLDPFS---EHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLSLSRALL 939 (1171)
Q Consensus 865 ~-~v~Q~~~lf~~tv~~nl~~~~---~~~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~LSgGqkqrl~lArall 939 (1171)
+ |+||++.+ ..|+++|+.++. ...++++.++++ .+ |++ ...+..+.+||||||||++|||||+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~---------~~--gl~~~~~~~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLK---------AL--KLGEEILRRKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHH---------HT--TCCGGGGGSBGGGSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHH---------Hc--CCChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9 99999988 889999997532 222333444444 32 555 5666777899999999999999999
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cC-EEEEEeCcEEEEecChhHHhhc
Q 001055 940 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CD-RILLLDSGRVLEYDTPEELLSN 1011 (1171)
Q Consensus 940 ~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d-~i~vl~~G~i~~~g~~~el~~~ 1011 (1171)
.+|++|||||||++||+.+++.+++.|+++.+ |+|+||||++.+.. || ++++|++|++++.|+++++.+.
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 99999999999999999999999999998754 99999999999876 99 9999999999999999998753
No 68
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=6.6e-42 Score=380.65 Aligned_cols=215 Identities=19% Similarity=0.290 Sum_probs=179.2
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcC--CCCCCceEEECCEecCCCChHHH-hh
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI--VELERGRILIDGFDIAKFGLMDL-RK 862 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~--~~p~~G~I~i~g~~i~~~~~~~~-r~ 862 (1171)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+ ++|++|+|.++|.++...+.... +.
T Consensus 20 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 97 (267)
T 2zu0_C 20 MLSIKDLHVSVED--KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGE 97 (267)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHH
T ss_pred eEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhC
Confidence 4999999999964 3699999999999999999999999999999999999 57999999999999987776655 44
Q ss_pred heEEEcCCcccccc-cHHhhccCCC----------CCCHHHHHHHHHHhcHHHHHHHccCCcch-hhhcCCC-CCChhHH
Q 001055 863 ILGIIPQSPVLFSG-TVRFNLDPFS----------EHSDADLWEALERAHLKDAIRRNSLGLDA-QVSEAGE-NFSVGQR 929 (1171)
Q Consensus 863 ~i~~v~Q~~~lf~~-tv~~nl~~~~----------~~~~~~i~~~l~~~~~~~~i~~lp~gl~~-~~~~~~~-~LSgGqk 929 (1171)
.|+|+||++.+|.. |+.+|+.... .....+.. ..+.+.++. .|+++ ..+.... +||||||
T Consensus 98 ~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~--~gl~~~~~~~~~~~~LSgGq~ 170 (267)
T 2zu0_C 98 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQ-----DLMEEKIAL--LKMPEDLLTRSVNVGFSGGEK 170 (267)
T ss_dssp TEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHH-----HHHHHHHHH--TTCCTTTTTSBTTTTCCHHHH
T ss_pred CEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHH-----HHHHHHHHH--cCCChhHhcCCcccCCCHHHH
Confidence 69999999998866 8999875310 01111111 123445554 35543 3444444 5999999
Q ss_pred HHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhh--cCEEEEEeCcEEEEecChh
Q 001055 930 QLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIID--CDRILLLDSGRVLEYDTPE 1006 (1171)
Q Consensus 930 qrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~--~d~i~vl~~G~i~~~g~~~ 1006 (1171)
|||+|||||+.+|+||||||||++||+.+.+.+++.|+++.+ ++|||+||||++.+.. ||+|++|++|++++.|+++
T Consensus 171 QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 250 (267)
T 2zu0_C 171 KRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 250 (267)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTT
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999998754 7899999999999876 8999999999999999998
Q ss_pred HHh
Q 001055 1007 ELL 1009 (1171)
Q Consensus 1007 el~ 1009 (1171)
++.
T Consensus 251 ~~~ 253 (267)
T 2zu0_C 251 LVK 253 (267)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
No 69
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=5e-42 Score=398.28 Aligned_cols=214 Identities=23% Similarity=0.365 Sum_probs=192.9
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCc
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 228 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 228 (1171)
..|+++|++|+|+. +++++|+||||+|++||+++|+|||||||||||++|+|+++ ++|.+.. .++.
T Consensus 18 ~~i~~~~l~~~y~~-~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ 95 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE-GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKA 95 (390)
T ss_dssp CCEEEEEEEEESSS-SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHT
T ss_pred CeEEEEEEEEEecC-CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCC
Confidence 46999999999963 24689999999999999999999999999999999999997 7665432 1346
Q ss_pred EEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCC
Q 001055 229 VAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 308 (1171)
Q Consensus 229 i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~ 308 (1171)
||||||++.+|..||+||+.+......+++.++++.+++.+.++..|..+++.+++.+.+|||||||||+|||||+.+|+
T Consensus 96 ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~ 175 (390)
T 3gd7_A 96 FGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK 175 (390)
T ss_dssp EEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCC
T ss_pred EEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998665566778889999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhc
Q 001055 309 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 309 vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
+||||||||+||+..+..+.+.+.+. ..++|+|+||||++.+..||||++|++|+|++.|+++++..+
T Consensus 176 lLLLDEPts~LD~~~~~~l~~~l~~~-~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~ 243 (390)
T 3gd7_A 176 ILLLDEPSAHLDPVTYQIIRRTLKQA-FADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHY 243 (390)
T ss_dssp EEEEESHHHHSCHHHHHHHHHHHHTT-TTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHC
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHH-hCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999876553 458999999999998888999999999999999999998765
No 70
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=3.2e-42 Score=383.33 Aligned_cols=208 Identities=25% Similarity=0.416 Sum_probs=174.2
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce--------------ec
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IR 226 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------~~ 226 (1171)
+.|+++|++|+|+. .+++|+||||+|++||+++|+||||||||||+++|+|+++|++|.+.. .+
T Consensus 6 ~~l~i~~ls~~y~~--~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~ 83 (275)
T 3gfo_A 6 YILKVEELNYNYSD--GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83 (275)
T ss_dssp EEEEEEEEEEECTT--SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHH
T ss_pred cEEEEEEEEEEECC--CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHh
Confidence 36999999999963 245999999999999999999999999999999999999999876532 13
Q ss_pred CcEEEEecCC--CCCcccHHHHHhcCC---CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHH
Q 001055 227 GTVAYVPQVS--WIFNATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 297 (1171)
Q Consensus 227 ~~i~~v~Q~~--~l~~~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv 297 (1171)
..||||||+| .++..||+||+.|+. .... +++.++++.+++.+..+ ....+|||||||||
T Consensus 84 ~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGqkQRv 152 (275)
T 3gfo_A 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKD-----------KPTHCLSFGQKKRV 152 (275)
T ss_dssp HSEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT-----------SBGGGSCHHHHHHH
T ss_pred CcEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CCcccCCHHHHHHH
Confidence 3599999997 467889999998762 1222 34556677777654333 33468999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhc-cCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHh
Q 001055 298 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLS 375 (1171)
Q Consensus 298 ~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~-~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~ 375 (1171)
+|||||+.+|++|||||||++||+.+++.+++.+.+.. .+|+|+|+||||++++.. ||||++|++|+++++|+++++.
T Consensus 153 ~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~ 232 (275)
T 3gfo_A 153 AIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 232 (275)
T ss_dssp HHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHT
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999877654 458999999999999875 8999999999999999999987
Q ss_pred hcchHH
Q 001055 376 NNGELF 381 (1171)
Q Consensus 376 ~~~~~~ 381 (1171)
.+....
T Consensus 233 ~~~~~~ 238 (275)
T 3gfo_A 233 AEKEVI 238 (275)
T ss_dssp HHHHHH
T ss_pred cCHHHH
Confidence 764433
No 71
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.2e-41 Score=381.58 Aligned_cols=231 Identities=34% Similarity=0.629 Sum_probs=177.9
Q ss_pred HHHHHhhccccccCCCCCCCCCCCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCC
Q 001055 138 RMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP 217 (1171)
Q Consensus 138 Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~ 217 (1171)
|+.++++.+.+... ........+.|+++|++|.+ +++|+|+||+|++|++++|+||||||||||+++|+|+++|
T Consensus 17 ~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p 90 (290)
T 2bbs_A 17 GFGELFEKAKQNNN-NRKTSNGDDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP 90 (290)
T ss_dssp HHHHHHHHCC------------------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCE
T ss_pred HHHHHhcccccccc-cccccCCCceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 67777765432111 11111223469999999853 4699999999999999999999999999999999999999
Q ss_pred CCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHH
Q 001055 218 VSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 297 (1171)
Q Consensus 218 ~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv 297 (1171)
++|.+. +.+.|+|+||++.+|+.||+||+. +......++.+.++.+++.+.++.++.++.+.+++.+.+|||||||||
T Consensus 91 ~~G~I~-~~g~i~~v~Q~~~l~~~tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv 168 (290)
T 2bbs_A 91 SEGKIK-HSGRISFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARI 168 (290)
T ss_dssp EEEEEE-CCSCEEEECSSCCCCSSBHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHH
T ss_pred CCcEEE-ECCEEEEEeCCCccCcccHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHH
Confidence 987654 456799999999998889999998 643344455667778889888888888888889999999999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhh
Q 001055 298 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 298 ~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
+|||||+.+|+++||||||++||+.++..+++.+++...+|+|+|+||||++++..||++++|++|++++.|+++++..
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 169 SLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhh
Confidence 9999999999999999999999999999999864433335899999999999988899999999999999999998864
No 72
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=7e-42 Score=377.15 Aligned_cols=199 Identities=23% Similarity=0.383 Sum_probs=170.0
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.++++||+++|+++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|. +++.||
T Consensus 4 ~l~i~~l~~~y~~~-~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~ 69 (253)
T 2nq2_C 4 ALSVENLGFYYQAE-NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIG 69 (253)
T ss_dssp EEEEEEEEEEETTT-TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEE
T ss_pred eEEEeeEEEEeCCC-CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEE
Confidence 38999999999722 3699999999999999999999999999999999999999999998 246799
Q ss_pred EEcCCcccc-cccHHhhccCCCC--------CCH---HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHH
Q 001055 866 IIPQSPVLF-SGTVRFNLDPFSE--------HSD---ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLS 933 (1171)
Q Consensus 866 ~v~Q~~~lf-~~tv~~nl~~~~~--------~~~---~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~ 933 (1171)
||||++.+| ..||++|+.+... ... +++.++++. .|++...+..+.+|||||||||+
T Consensus 70 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------~~l~~~~~~~~~~LSgGq~qrv~ 138 (253)
T 2nq2_C 70 FVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDY-----------LNLTHLAKREFTSLSGGQRQLIL 138 (253)
T ss_dssp EECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHH-----------TTCGGGTTSBGGGSCHHHHHHHH
T ss_pred EEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHH-----------cCChHHhcCChhhCCHHHHHHHH
Confidence 999999887 5599999975321 111 123333333 25555556667789999999999
Q ss_pred HHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHhh
Q 001055 934 LSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 934 lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|||++|||++.+.. ||+|++|++|+ ++.|+++++.+
T Consensus 139 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 139 IARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp HHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 99999999999999999999999999999999998753 7899999999999866 99999999999 99999998863
No 73
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=5.3e-42 Score=392.19 Aligned_cols=208 Identities=25% Similarity=0.358 Sum_probs=175.2
Q ss_pred CCCcEEEEeeEEEcCCCC-CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------
Q 001055 159 GLPAISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------- 224 (1171)
Q Consensus 159 ~~~~i~~~~~s~~~~~~~-~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------- 224 (1171)
..+.|+++|++++|+.+. ..++|+||||+|++||++||+||||||||||+++|+|+++|++|.+..
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~ 100 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 345799999999997422 246999999999999999999999999999999999999999886532
Q ss_pred --ecCcEEEEecCCCCC-cccHHHHHhcCC---CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHH
Q 001055 225 --IRGTVAYVPQVSWIF-NATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 294 (1171)
Q Consensus 225 --~~~~i~~v~Q~~~l~-~~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqr 294 (1171)
.+..|||+||++.++ ..||+|||.++. .... +++.++++.+++.+..+.. ..+||||||
T Consensus 101 ~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~-----------~~~LSGGqk 169 (366)
T 3tui_C 101 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSY-----------PSNLSGGQK 169 (366)
T ss_dssp HHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCC-----------TTTSCHHHH
T ss_pred HHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCC-----------hhhCCHHHH
Confidence 245699999999887 579999998752 1222 3455667777776544433 358999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChh
Q 001055 295 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFE 372 (1171)
Q Consensus 295 qRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~ 372 (1171)
|||+|||||+.+|++||||||||+||+.+++.+++.+.+..+ .|.|+|+||||++++.. ||||++|++|+++++|+++
T Consensus 170 QRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ 249 (366)
T 3tui_C 170 QRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVS 249 (366)
T ss_dssp HHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHH
T ss_pred HHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999998777644 48999999999999865 8999999999999999999
Q ss_pred HHhhc
Q 001055 373 DLSNN 377 (1171)
Q Consensus 373 ~l~~~ 377 (1171)
++..+
T Consensus 250 ev~~~ 254 (366)
T 3tui_C 250 EVFSH 254 (366)
T ss_dssp HHHSS
T ss_pred HHHhC
Confidence 98765
No 74
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=4.5e-42 Score=374.99 Aligned_cols=202 Identities=25% Similarity=0.388 Sum_probs=164.5
Q ss_pred EEEEeeEEEcCCCC-CCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee----------------
Q 001055 163 ISIRNGYFSWDSKA-ERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI---------------- 225 (1171)
Q Consensus 163 i~~~~~s~~~~~~~-~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~---------------- 225 (1171)
|+++|++|+|+.+. .+++|+||||++++||+++|+||||||||||+++|+|+++|++|.+...
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999997422 2469999999999999999999999999999999999999998865321
Q ss_pred cCcEEEEecCCCCCc-ccHHHHHhcCC------CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHH
Q 001055 226 RGTVAYVPQVSWIFN-ATVRDNILFGS------AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 294 (1171)
Q Consensus 226 ~~~i~~v~Q~~~l~~-~Tv~eni~~g~------~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqr 294 (1171)
+..|||++|+|.++. .||+||+.++. .... +++.+.++.+++.+.. .+....+||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGq~ 151 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF----------ANHKPNQLSGGQQ 151 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGG----------TTCCGGGSCHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhh----------hhCChhhCCHHHH
Confidence 124999999999875 69999998741 1222 2233445555543321 1334578999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhH
Q 001055 295 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFED 373 (1171)
Q Consensus 295 qRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~ 373 (1171)
|||+|||||+.+|++|||||||++||+.+++.+++.+.+...+ |+|+|+||||++....||||++|++|++++.++.++
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC-
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhh
Confidence 9999999999999999999999999999999999987766544 899999999999777799999999999999887765
Q ss_pred H
Q 001055 374 L 374 (1171)
Q Consensus 374 l 374 (1171)
+
T Consensus 232 ~ 232 (235)
T 3tif_A 232 F 232 (235)
T ss_dssp -
T ss_pred h
Confidence 4
No 75
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=3.6e-41 Score=385.44 Aligned_cols=203 Identities=28% Similarity=0.455 Sum_probs=173.9
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce--------------ecC
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IRG 227 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------~~~ 227 (1171)
.|+++|++++|+ ++++|+||||+|++||+++|+|||||||||||++|+|+++|++|.+.. .++
T Consensus 4 ~l~i~~ls~~y~---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQ---NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 589999999996 357999999999999999999999999999999999999999876532 134
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCCC----C---HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHH
Q 001055 228 TVAYVPQVSWIF-NATVRDNILFGSAF----E---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 299 (1171)
Q Consensus 228 ~i~~v~Q~~~l~-~~Tv~eni~~g~~~----~---~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~L 299 (1171)
.||||+|++.+| ..||+|||.|+... . .+++.++++.+++.+..+..| .+|||||||||+|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~LSGGq~QRVal 149 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP-----------HELSGGQQQRAAL 149 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCG-----------GGSCHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHH
Confidence 699999999987 57999999997431 1 235566777777765444433 5899999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhc-cCCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 001055 300 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 300 AraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~-~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
||||+.+|++||||||||+||+..+..+.+.+.+.. ..|.|+|+||||++++. .||||++|++|++++.|+++++..+
T Consensus 150 ArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 150 ARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 999999999999999999999999999988776643 45899999999999876 4899999999999999999998765
Q ss_pred c
Q 001055 378 G 378 (1171)
Q Consensus 378 ~ 378 (1171)
.
T Consensus 230 p 230 (359)
T 3fvq_A 230 P 230 (359)
T ss_dssp C
T ss_pred c
Confidence 3
No 76
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=7.2e-41 Score=370.37 Aligned_cols=202 Identities=28% Similarity=0.395 Sum_probs=170.5
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce--------------ecC
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IRG 227 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------~~~ 227 (1171)
.|+++|++|+|+ ++++|+||||+|++||+++|+||||||||||+++|+|+++|++|.+.. .+.
T Consensus 24 ~l~i~~l~~~y~---~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFG---SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 599999999995 357999999999999999999999999999999999999999876532 123
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCC----CCC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHH
Q 001055 228 TVAYVPQVSWIF-NATVRDNILFGS----AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 298 (1171)
Q Consensus 228 ~i~~v~Q~~~l~-~~Tv~eni~~g~----~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~ 298 (1171)
.||||||++.++ ..||+||+.++. ... .+++.++++..++.+..+ ....+|||||||||+
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGqkQRv~ 169 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAH-----------AYPDSLSGGQAQRVA 169 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTT-----------SCGGGSCHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhc-----------CChhhCCHHHHHHHH
Confidence 599999999887 469999998742 122 133455666666654332 334689999999999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 001055 299 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 299 LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
|||||+.+|++|||||||++||+.+++.+++.+.+...+|+|+|+||||++++. .||++++|++|++++.|+++++.+.
T Consensus 170 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 170 IARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999987776556899999999999987 4899999999999999999988654
No 77
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-40 Score=365.46 Aligned_cols=203 Identities=23% Similarity=0.367 Sum_probs=167.5
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecC
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRG 227 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~ 227 (1171)
+.|+++|++|+|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+.
T Consensus 5 ~~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 81 (240)
T 1ji0_A 5 IVLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81 (240)
T ss_dssp EEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHT
T ss_pred ceEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhC
Confidence 36999999999963 57999999999999999999999999999999999999999876532 123
Q ss_pred cEEEEecCCCCCc-ccHHHHHhcCC-C-CCH----HHHHHHHHHcC-chHHHhcCCCCCccccCCCCCccChHHHHHHHH
Q 001055 228 TVAYVPQVSWIFN-ATVRDNILFGS-A-FEP----ARYEKAIDVTS-LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM 299 (1171)
Q Consensus 228 ~i~~v~Q~~~l~~-~Tv~eni~~g~-~-~~~----~~~~~~~~~~~-l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~L 299 (1171)
.|||+||++.++. .||+||+.++. . ... +++.++++..+ +.+ ..+....+|||||||||+|
T Consensus 82 ~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~-----------~~~~~~~~LSgGq~qrv~l 150 (240)
T 1ji0_A 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKE-----------RLKQLGGTLSGGEQQMLAI 150 (240)
T ss_dssp TEEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHT-----------TTTSBSSSSCHHHHHHHHH
T ss_pred CEEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhh-----------HhcCChhhCCHHHHHHHHH
Confidence 4999999998875 59999999863 1 111 12233333331 221 2344567999999999999
Q ss_pred HHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 001055 300 ARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 300 AraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
||||+.+|++|||||||++||+.+++.+++.+.+...+|+|+|+||||++++. .|||+++|++|++++.|+++++.+.
T Consensus 151 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 151 GRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp HHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 99999999999999999999999999999987766556899999999998875 5899999999999999999887654
No 78
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=9.4e-41 Score=370.31 Aligned_cols=202 Identities=28% Similarity=0.419 Sum_probs=171.7
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-----------------
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------- 224 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------------- 224 (1171)
.|+++|++++|+ ++++|+||||+|++||+++|+||||||||||+++|+|+++|++|.+..
T Consensus 6 ~l~i~~l~~~y~---~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 599999999995 257999999999999999999999999999999999999999876522
Q ss_pred --------ecCcEEEEecCCCCC-cccHHHHHhcCC----CCC----HHHHHHHHHHcCchHH-HhcCCCCCccccCCCC
Q 001055 225 --------IRGTVAYVPQVSWIF-NATVRDNILFGS----AFE----PARYEKAIDVTSLQHD-LDLLPGGDVTEIGERG 286 (1171)
Q Consensus 225 --------~~~~i~~v~Q~~~l~-~~Tv~eni~~g~----~~~----~~~~~~~~~~~~l~~~-~~~~~~~~~~~i~~~g 286 (1171)
.+..||||||++.++ ..||+||+.++. ... .+++.++++..++.+. .+.. .
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~ 151 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKY-----------P 151 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSC-----------G
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCC-----------c
Confidence 123599999999887 469999998742 122 2345566777777665 4433 3
Q ss_pred CccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhh-hcCEEEEEeCCEE
Q 001055 287 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMV 365 (1171)
Q Consensus 287 ~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i 365 (1171)
.+|||||||||+|||||+.+|++|||||||++||+.+++.+++.+.+...+|+|+|+||||++++. .||||++|++|++
T Consensus 152 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i 231 (262)
T 1b0u_A 152 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 231 (262)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 589999999999999999999999999999999999999999987766556899999999999986 5899999999999
Q ss_pred EEecChhHHhhc
Q 001055 366 KEEGTFEDLSNN 377 (1171)
Q Consensus 366 ~~~g~~~~l~~~ 377 (1171)
++.|+++++.+.
T Consensus 232 ~~~g~~~~~~~~ 243 (262)
T 1b0u_A 232 EEEGDPEQVFGN 243 (262)
T ss_dssp EEEECHHHHHHS
T ss_pred EEeCCHHHHHhC
Confidence 999999988654
No 79
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=4.7e-41 Score=386.87 Aligned_cols=202 Identities=30% Similarity=0.414 Sum_probs=173.2
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEEE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 231 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~ 231 (1171)
.|+++|++|+|+ +.++|+||||+|++||+++|+|||||||||||++|+|+++|++|.+.. .++.|||
T Consensus 3 ~l~~~~l~~~yg---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~ 79 (381)
T 3rlf_A 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGM 79 (381)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEE
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEE
Confidence 489999999996 357999999999999999999999999999999999999999886532 1245999
Q ss_pred EecCCCCC-cccHHHHHhcCC---CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHh
Q 001055 232 VPQVSWIF-NATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 303 (1171)
Q Consensus 232 v~Q~~~l~-~~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL 303 (1171)
|+|++.+| ..||+|||.|+. ..+. +++.++++..++.+..+.. ..+|||||||||+|||||
T Consensus 80 VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~-----------p~~LSGGqrQRVaiArAL 148 (381)
T 3rlf_A 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRK-----------PKALSGGQRQRVAIGRTL 148 (381)
T ss_dssp ECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCC-----------GGGSCHHHHHHHHHHHHH
T ss_pred EecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhHCCHHHHHHHHHHHHH
Confidence 99999987 579999999862 1222 3456667777776544433 358999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 001055 304 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 304 ~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
+.+|++|||||||++||+..+..+.+.+.+..++ |.|+|+||||++++. .||||++|++|++++.|+++++...
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~ 224 (381)
T 3rlf_A 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (381)
T ss_dssp HHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhC
Confidence 9999999999999999999999999988776544 899999999999876 4899999999999999999998765
No 80
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=3.1e-41 Score=365.84 Aligned_cols=195 Identities=23% Similarity=0.335 Sum_probs=163.2
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----e------------
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----I------------ 225 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----~------------ 225 (1171)
.|+++|++++|+. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. +
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 5899999999963 57999999999999999999999999999999999999999876532 0
Q ss_pred cCcEEEEecCCCCC-cccHHHHHhcCC---CCC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHH
Q 001055 226 RGTVAYVPQVSWIF-NATVRDNILFGS---AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 297 (1171)
Q Consensus 226 ~~~i~~v~Q~~~l~-~~Tv~eni~~g~---~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv 297 (1171)
+..|+|+||++.++ ..||+||+.++. ... .+++.++++..++.+. ......+|||||||||
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv 149 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDK-----------LSRKPYELSGGEQQRV 149 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTC-----------TTCCGGGSCHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHHH
Confidence 14599999999887 579999998752 111 1234445555554332 2334468999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecC
Q 001055 298 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGT 370 (1171)
Q Consensus 298 ~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~ 370 (1171)
+|||||+.+|+++||||||++||+.+++.+++.+.+...+|+|+|+||||++++..||++++|++|+++++|+
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 150 AIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 9999999999999999999999999999999987776556899999999999887789999999999998875
No 81
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=2.6e-40 Score=367.85 Aligned_cols=205 Identities=25% Similarity=0.404 Sum_probs=173.9
Q ss_pred cEEEEeeEEEcCCCCC--CCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------ecCcEE
Q 001055 162 AISIRNGYFSWDSKAE--RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------IRGTVA 230 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~--~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------~~~~i~ 230 (1171)
.|+++|++|+|+.+.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+.. .+..||
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 4899999999962111 46999999999999999999999999999999999999999886533 234699
Q ss_pred EEecCC--CCCcccHHHHHhcCCC------CCHHHHHHHHHHcCch--HHHhcCCCCCccccCCCCCccChHHHHHHHHH
Q 001055 231 YVPQVS--WIFNATVRDNILFGSA------FEPARYEKAIDVTSLQ--HDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300 (1171)
Q Consensus 231 ~v~Q~~--~l~~~Tv~eni~~g~~------~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LA 300 (1171)
|++|+| .++..||+||+.++.. ...+++.++++..++. +..+..+ .+|||||||||+||
T Consensus 82 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------~~LSgGq~qRv~lA 150 (266)
T 2yz2_A 82 IAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----------FFLSGGEKRRVAIA 150 (266)
T ss_dssp EECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----------GGSCHHHHHHHHHH
T ss_pred EEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh-----------hhCCHHHHHHHHHH
Confidence 999996 4568899999998632 1135667788888886 5544433 58999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 001055 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 301 raL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
|||+.+|++|||||||++||+.+++.+++.+.+...+|+|+|+||||++++.. ||++++|++|++++.|+++++.+.
T Consensus 151 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 151 SVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999877665458999999999999875 899999999999999998887643
No 82
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.5e-40 Score=366.64 Aligned_cols=201 Identities=26% Similarity=0.369 Sum_probs=171.6
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCC-c
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIF-N 240 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~-~ 240 (1171)
.|+++|++++|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|.+. .+..|||+||++.++ .
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-~~~~i~~v~q~~~~~~~ 80 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-VYQSIGFVPQFFSSPFA 80 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-ECSCEEEECSCCCCSSC
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-EeccEEEEcCCCccCCC
Confidence 5899999999962 35799999999999999999999999999999999999999988776 566799999999886 7
Q ss_pred ccHHHHHhcCCC--------CCH---HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCE
Q 001055 241 ATVRDNILFGSA--------FEP---ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDV 309 (1171)
Q Consensus 241 ~Tv~eni~~g~~--------~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~v 309 (1171)
.||+||+.++.. ... +++.++++..++.+..+ ....+|||||||||+|||||+.+|++
T Consensus 81 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qrv~lAraL~~~p~l 149 (253)
T 2nq2_C 81 YSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAK-----------REFTSLSGGQRQLILIARAIASECKL 149 (253)
T ss_dssp CBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTT-----------SBGGGSCHHHHHHHHHHHHHHTTCSE
T ss_pred CCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhc-----------CChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 899999998631 111 34555666666654332 33468999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 001055 310 FIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 310 llLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
|||||||++||+.+++.+++.+.+...+ |+|+|++|||++++. .||++++|++|+ ++.|+++++.+.
T Consensus 150 llLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~~ 218 (253)
T 2nq2_C 150 ILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILTS 218 (253)
T ss_dssp EEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCCH
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhCc
Confidence 9999999999999999999987766555 899999999999985 589999999999 999999887643
No 83
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=9.2e-41 Score=369.79 Aligned_cols=199 Identities=20% Similarity=0.357 Sum_probs=167.0
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------------ecC
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------------IRG 227 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------------~~~ 227 (1171)
+.|+++|++|+|++ +++|+||||++++||+++|+||||||||||+++|+|+++|++|.+.. .+.
T Consensus 6 ~~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (257)
T 1g6h_A 6 EILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82 (257)
T ss_dssp EEEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred cEEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhC
Confidence 36999999999963 57999999999999999999999999999999999999999876532 123
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCCC----------------C-H---HHHHHHHHHcCchHHHhcCCCCCccccCCCC
Q 001055 228 TVAYVPQVSWIF-NATVRDNILFGSAF----------------E-P---ARYEKAIDVTSLQHDLDLLPGGDVTEIGERG 286 (1171)
Q Consensus 228 ~i~~v~Q~~~l~-~~Tv~eni~~g~~~----------------~-~---~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g 286 (1171)
.|||+||++.++ ..||+||+.++... . . +++.++++..++.+. .+...
T Consensus 83 ~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~ 151 (257)
T 1g6h_A 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHL-----------YDRKA 151 (257)
T ss_dssp TEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGG-----------TTSBG
T ss_pred CEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchh-----------hCCCc
Confidence 599999999887 57999999886311 1 1 233444555554332 23445
Q ss_pred CccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhh-hcCEEEEEeCCEE
Q 001055 287 VNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMV 365 (1171)
Q Consensus 287 ~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i 365 (1171)
.+|||||||||+|||||+.+|++|||||||++||+.+++.+++.+.+...+|+|+|+||||++++. .|||+++|++|++
T Consensus 152 ~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i 231 (257)
T 1g6h_A 152 GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQI 231 (257)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEE
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 689999999999999999999999999999999999999999987776556899999999999986 5899999999999
Q ss_pred EEecChhH
Q 001055 366 KEEGTFED 373 (1171)
Q Consensus 366 ~~~g~~~~ 373 (1171)
++.|++++
T Consensus 232 ~~~g~~~~ 239 (257)
T 1g6h_A 232 IAEGRGEE 239 (257)
T ss_dssp EEEEESHH
T ss_pred EEEeCHHH
Confidence 99999887
No 84
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.6e-40 Score=366.44 Aligned_cols=203 Identities=25% Similarity=0.403 Sum_probs=171.3
Q ss_pred CCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-----------ecCc
Q 001055 160 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-----------IRGT 228 (1171)
Q Consensus 160 ~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-----------~~~~ 228 (1171)
.+.|+++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .++.
T Consensus 13 ~~~l~i~~l~~~y~---~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~ 89 (256)
T 1vpl_A 13 MGAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKL 89 (256)
T ss_dssp -CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTT
T ss_pred CCeEEEEEEEEEEC---CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhc
Confidence 34699999999995 357999999999999999999999999999999999999999886532 2346
Q ss_pred EEEEecCCCCC-cccHHHHHhcCC---CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHH
Q 001055 229 VAYVPQVSWIF-NATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300 (1171)
Q Consensus 229 i~~v~Q~~~l~-~~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LA 300 (1171)
|||+||++.++ ..||+||+.++. .... +++.++++..++.+..+ ....+|||||||||+||
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK-----------DRVSTYSKGMVRKLLIA 158 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGG-----------SBGGGCCHHHHHHHHHH
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhc-----------CChhhCCHHHHHHHHHH
Confidence 99999999887 459999998742 1122 34455666666654433 23468999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhh
Q 001055 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 301 raL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
|||+.+|++|||||||++||+.+++.+++.+.+...+|+|+|++|||++++.. ||++++|++|++++.|+++++.+
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999999999999877765568999999999999876 89999999999999999888753
No 85
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.2e-40 Score=369.65 Aligned_cols=203 Identities=24% Similarity=0.336 Sum_probs=171.8
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCc
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGT 228 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~ 228 (1171)
+.++++|+++.|+ ++++|+||||+|++||+++|+||||||||||+++|+|+++|++|.+.. .+..
T Consensus 10 ~~l~~~~l~~~~~---~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 86 (266)
T 4g1u_C 10 ALLEASHLHYHVQ---QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALART 86 (266)
T ss_dssp CEEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHH
T ss_pred ceEEEEeEEEEeC---CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhhe
Confidence 4699999999996 357999999999999999999999999999999999999999886542 1234
Q ss_pred EEEEecCCCC-CcccHHHHHhcCCC-----CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHH
Q 001055 229 VAYVPQVSWI-FNATVRDNILFGSA-----FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 302 (1171)
Q Consensus 229 i~~v~Q~~~l-~~~Tv~eni~~g~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAra 302 (1171)
++|++|++.+ +..||+||+.++.. ...++..++++.+++.+..+ ....+|||||||||+||||
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~QRv~iAra 155 (266)
T 4g1u_C 87 RAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQ-----------RDYRVLSGGEQQRVQLARV 155 (266)
T ss_dssp EEEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTT-----------SBGGGCCHHHHHHHHHHHH
T ss_pred EEEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhc-----------CCcccCCHHHHHHHHHHHH
Confidence 9999999987 57899999998632 12345566677666543222 2346899999999999999
Q ss_pred hcc------CCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHH
Q 001055 303 VYS------NSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDL 374 (1171)
Q Consensus 303 L~~------~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 374 (1171)
|+. +|++|||||||++||+.++..+++.+.+...+ ++|+|+||||++++. .||||++|++|+++++|+++++
T Consensus 156 L~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~ 235 (266)
T 4g1u_C 156 LAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEV 235 (266)
T ss_dssp HHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999 99999999999999999999999987766444 579999999999987 5899999999999999999998
Q ss_pred hhc
Q 001055 375 SNN 377 (1171)
Q Consensus 375 ~~~ 377 (1171)
.+.
T Consensus 236 ~~~ 238 (266)
T 4g1u_C 236 LNA 238 (266)
T ss_dssp CCH
T ss_pred hCc
Confidence 754
No 86
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=3.7e-41 Score=361.23 Aligned_cols=193 Identities=21% Similarity=0.351 Sum_probs=163.5
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.|+++||+++|++ ++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ..|+.|+
T Consensus 10 ~l~~~~ls~~y~~---~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i~ 81 (214)
T 1sgw_A 10 KLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIF 81 (214)
T ss_dssp EEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEE
T ss_pred eEEEEEEEEEeCC---eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcEE
Confidence 5999999999964 6999999999999999999999999999999999999999999999999985 3678899
Q ss_pred EEcCCcccccc-cHHhhccCCC-----CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001055 866 IIPQSPVLFSG-TVRFNLDPFS-----EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 939 (1171)
Q Consensus 866 ~v~Q~~~lf~~-tv~~nl~~~~-----~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 939 (1171)
||||++.+|.. ||++|+.++. ...++++.++++.. |++.. ++.+.+|||||||||+|||||+
T Consensus 82 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~-~~~~~~LSgGqkqrv~laraL~ 149 (214)
T 1sgw_A 82 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV-----------EVLDL-KKKLGELSQGTIRRVQLASTLL 149 (214)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHT-----------TCCCT-TSBGGGSCHHHHHHHHHHHHTT
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHc-----------CCCcC-CCChhhCCHHHHHHHHHHHHHH
Confidence 99999998876 9999996421 11233344444432 45555 6667789999999999999999
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhh-cCEEEEEeCcEE
Q 001055 940 RRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIID-CDRILLLDSGRV 999 (1171)
Q Consensus 940 ~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i 999 (1171)
.+|++|||||||++||+.+...+++.|+++. .++|||++||+++.+.. ||+|+ +.+|+|
T Consensus 150 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~-~~~~~~ 210 (214)
T 1sgw_A 150 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH-KYSTKI 210 (214)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG-GGBC--
T ss_pred hCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE-EeCCcc
Confidence 9999999999999999999999999999875 37899999999999988 77766 445555
No 87
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.7e-40 Score=380.27 Aligned_cols=207 Identities=28% Similarity=0.427 Sum_probs=174.8
Q ss_pred CCCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCc
Q 001055 159 GLPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGT 228 (1171)
Q Consensus 159 ~~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~ 228 (1171)
+.+.|+++|++++|+. ++++|+|+||+|++||+++|+|||||||||||++|+|+++|++|.+.. .++.
T Consensus 11 ~~~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ 88 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRN 88 (355)
T ss_dssp CCEEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSS
T ss_pred CCceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCc
Confidence 3457999999999931 357999999999999999999999999999999999999999886532 2346
Q ss_pred EEEEecCCCCC-cccHHHHHhcCC---CCC----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHH
Q 001055 229 VAYVPQVSWIF-NATVRDNILFGS---AFE----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMA 300 (1171)
Q Consensus 229 i~~v~Q~~~l~-~~Tv~eni~~g~---~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LA 300 (1171)
||||+|++.+| ..||+|||.|+. ... .+++.++++..++.+..+..| .+|||||||||+||
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~LSGGq~QRvalA 157 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFP-----------HELSGGQQQRVALA 157 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHHH
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCc-----------ccCCHHHHHHHHHH
Confidence 99999999887 579999999862 122 234566677777765444333 58999999999999
Q ss_pred HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecChhHHhhcc
Q 001055 301 RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGTFEDLSNNG 378 (1171)
Q Consensus 301 raL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 378 (1171)
|||+.+|++||||||||+||+..++.+.+.+.+..++ |.|+|+||||++++.. ||||++|++|++++.|+++++.++.
T Consensus 158 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 237 (355)
T 1z47_A 158 RALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237 (355)
T ss_dssp HHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999999999987765443 8999999999998764 8999999999999999999987653
No 88
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=3.7e-40 Score=378.52 Aligned_cols=203 Identities=27% Similarity=0.342 Sum_probs=173.8
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEEE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 231 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~ 231 (1171)
.|+++|++++|+ ++++|+|+||++++||+++|+|||||||||||++|+|+++|++|.+.. .++.|||
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 79 (359)
T 2yyz_A 3 SIRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGM 79 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEE
T ss_pred EEEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEE
Confidence 489999999995 356999999999999999999999999999999999999999886532 1346999
Q ss_pred EecCCCCC-cccHHHHHhcCCCC---C----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHh
Q 001055 232 VPQVSWIF-NATVRDNILFGSAF---E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 303 (1171)
Q Consensus 232 v~Q~~~l~-~~Tv~eni~~g~~~---~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL 303 (1171)
|+|++.+| ..||+|||.|+... . .+++.++++..++.+..+..| .+|||||||||+|||||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSgGq~QRvalArAL 148 (359)
T 2yyz_A 80 VFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP-----------TQLSGGQQQRVALARAL 148 (359)
T ss_dssp ECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHHHHH
Confidence 99999887 57999999987421 1 235666777777765544433 58999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhcc
Q 001055 304 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNG 378 (1171)
Q Consensus 304 ~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 378 (1171)
+.+|++||||||||+||+..++.+.+.+.+..++ |.|+|+||||++++. .||||++|++|++++.|+++++.++.
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 225 (359)
T 2yyz_A 149 VKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSP 225 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 9999999999999999999999999987765443 899999999999875 58999999999999999999987653
No 89
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=5.6e-40 Score=377.47 Aligned_cols=203 Identities=26% Similarity=0.365 Sum_probs=173.0
Q ss_pred cEEEEeeEEEcCCCCCCC--ceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------------
Q 001055 162 AISIRNGYFSWDSKAERP--TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------- 224 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~--~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------- 224 (1171)
.|+++|++++|+. ++ +|+|+||++++||+++|+|||||||||||++|+|+++|++|.+..
T Consensus 3 ~l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 4899999999963 56 999999999999999999999999999999999999999876421
Q ss_pred ecCcEEEEecCCCCC-cccHHHHHhcCCCC---C----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHH
Q 001055 225 IRGTVAYVPQVSWIF-NATVRDNILFGSAF---E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQR 296 (1171)
Q Consensus 225 ~~~~i~~v~Q~~~l~-~~Tv~eni~~g~~~---~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqR 296 (1171)
.++.||||+|++.+| ..||+|||.|+... . .+++.++++..++.+..+..+ .+||||||||
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----------~~LSGGq~QR 148 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQR 148 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHH
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHH
Confidence 134699999999987 56999999987421 2 234566677777765444333 5899999999
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHH
Q 001055 297 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDL 374 (1171)
Q Consensus 297 v~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l 374 (1171)
|+|||||+.+|++|||||||++||+..++.+.+.+.+..+ .|+|+|+||||++++. .||||++|++|++++.|+++++
T Consensus 149 valAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l 228 (353)
T 1oxx_K 149 VALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228 (353)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999998776544 3899999999999876 4899999999999999999998
Q ss_pred hhcc
Q 001055 375 SNNG 378 (1171)
Q Consensus 375 ~~~~ 378 (1171)
.++.
T Consensus 229 ~~~p 232 (353)
T 1oxx_K 229 YDNP 232 (353)
T ss_dssp HHSC
T ss_pred HhCc
Confidence 7653
No 90
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=4.4e-40 Score=378.29 Aligned_cols=202 Identities=29% Similarity=0.379 Sum_probs=170.6
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEEE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 231 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~ 231 (1171)
.|+++|++++|+ ++++|+|+||++++||+++|+|||||||||||++|+|+++|++|.+.. .++.|||
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 79 (362)
T 2it1_A 3 EIKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGL 79 (362)
T ss_dssp CEEEEEEEEESS---SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEE
T ss_pred EEEEEeEEEEEC---CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEE
Confidence 489999999995 357999999999999999999999999999999999999999876532 1346999
Q ss_pred EecCCCCC-cccHHHHHhcCC---CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHh
Q 001055 232 VPQVSWIF-NATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 303 (1171)
Q Consensus 232 v~Q~~~l~-~~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL 303 (1171)
|+|++.+| ..||+|||.|+. .... +++.++++..++.+..+. ...+|||||||||+|||||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r-----------~~~~LSGGq~QRvalArAL 148 (362)
T 2it1_A 80 VFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNR-----------YPWQLSGGQQQRVAIARAL 148 (362)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTC-----------CGGGSCHHHHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhC-----------ChhhCCHHHHHHHHHHHHH
Confidence 99999987 579999999862 1222 345556666666543333 3368999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 001055 304 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 304 ~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
+.+|++||||||||+||+..++.+.+.+.+..++ |.|+|+||||++++. .||||++|++|++++.|+++++.++
T Consensus 149 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~ 224 (362)
T 2it1_A 149 VKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYK 224 (362)
T ss_dssp TTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999987765443 899999999999875 5899999999999999999998754
No 91
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=7.7e-40 Score=377.60 Aligned_cols=202 Identities=25% Similarity=0.344 Sum_probs=168.7
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEEE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAY 231 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~ 231 (1171)
.|+++|++++|+ ++++|+|+||+|++||+++|+|||||||||||++|+|+++|++|.+.. .++.|||
T Consensus 11 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 87 (372)
T 1v43_A 11 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM 87 (372)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEE
T ss_pred eEEEEEEEEEEC---CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEE
Confidence 599999999996 256999999999999999999999999999999999999999886532 1245999
Q ss_pred EecCCCCC-cccHHHHHhcCCCC---CH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHh
Q 001055 232 VPQVSWIF-NATVRDNILFGSAF---EP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 303 (1171)
Q Consensus 232 v~Q~~~l~-~~Tv~eni~~g~~~---~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL 303 (1171)
|+|++.+| ..||+|||.|+... .. +++.++++..++.+..+..+ .+|||||||||+|||||
T Consensus 88 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRvalArAL 156 (372)
T 1v43_A 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-----------AQLSGGQRQRVAVARAI 156 (372)
T ss_dssp EEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----------TTCCSSCHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCCh-----------hhCCHHHHHHHHHHHHH
Confidence 99999887 57999999997431 22 34566677777765544433 58999999999999999
Q ss_pred ccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 001055 304 YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 304 ~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
+.+|++||||||||+||+..++.+.+.+.+..++ |.|+|+||||++++. .||||++|++|++++.|+++++..+
T Consensus 157 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 232 (372)
T 1v43_A 157 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 232 (372)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999987766444 899999999999875 5899999999999999999998765
No 92
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=6e-40 Score=358.60 Aligned_cols=198 Identities=23% Similarity=0.354 Sum_probs=164.9
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEEEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 232 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v 232 (1171)
|+++|++++|+. +|+|+||++++ |+++|+||||||||||+++|+|+++|++|.+.. .+..|||+
T Consensus 2 l~~~~l~~~y~~-----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v 75 (240)
T 2onk_A 2 FLKVRAEKRLGN-----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75 (240)
T ss_dssp CEEEEEEEEETT-----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCC
T ss_pred EEEEEEEEEeCC-----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEE
Confidence 689999999952 59999999999 999999999999999999999999999876532 13469999
Q ss_pred ecCCCCCc-ccHHHHHhcCCCC-C----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccC
Q 001055 233 PQVSWIFN-ATVRDNILFGSAF-E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 306 (1171)
Q Consensus 233 ~Q~~~l~~-~Tv~eni~~g~~~-~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~ 306 (1171)
||++.++. .||+||+.++... . .+++.++++..++.+.. .....+|||||||||+|||||+.+
T Consensus 76 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGqkqRv~lAral~~~ 144 (240)
T 2onk_A 76 PQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLL-----------DRKPARLSGGERQRVALARALVIQ 144 (240)
T ss_dssp CSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTT-----------TCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred cCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHh-----------cCChhhCCHHHHHHHHHHHHHHcC
Confidence 99998874 5999999987432 1 12344455555543322 233468999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 001055 307 SDVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 307 ~~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~ 377 (1171)
|+++||||||++||+.+++.+++.+.+... .|+|+|++|||++++. .||++++|++|++++.|+++++.+.
T Consensus 145 p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 217 (240)
T 2onk_A 145 PRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp CSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999998776544 3899999999999875 5899999999999999999887643
No 93
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=6.4e-40 Score=375.40 Aligned_cols=201 Identities=28% Similarity=0.397 Sum_probs=171.4
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEEEE
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYV 232 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v 232 (1171)
|+++|++++|+ ++ +|+|+||++++||+++|+|||||||||||++|+|+++|++|.+.. .++.||||
T Consensus 2 l~~~~l~~~y~---~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 77 (348)
T 3d31_A 2 IEIESLSRKWK---NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV 77 (348)
T ss_dssp EEEEEEEEECS---SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEE
T ss_pred EEEEEEEEEEC---CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEE
Confidence 78999999995 24 999999999999999999999999999999999999999886532 12359999
Q ss_pred ecCCCCC-cccHHHHHhcCCC----CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCC
Q 001055 233 PQVSWIF-NATVRDNILFGSA----FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 307 (1171)
Q Consensus 233 ~Q~~~l~-~~Tv~eni~~g~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~ 307 (1171)
+|++.+| ..||+|||.|+.. ...+++.++++..++.+..+.. ..+|||||||||+|||||+.+|
T Consensus 78 ~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~-----------~~~LSgGq~QRvalAraL~~~P 146 (348)
T 3d31_A 78 YQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRN-----------PLTLSGGEQQRVALARALVTNP 146 (348)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSC-----------GGGSCHHHHHHHHHHHHTTSCC
T ss_pred ecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCC-----------hhhCCHHHHHHHHHHHHHHcCC
Confidence 9999988 4699999998621 1225566677777765443333 3589999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhhcc
Q 001055 308 DVFIFDDPLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSNNG 378 (1171)
Q Consensus 308 ~vllLDEpts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 378 (1171)
++||||||||+||+..++.+.+.+.+..+ .|.|+|+||||++++. .||||++|++|++++.|+++++.++.
T Consensus 147 ~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p 219 (348)
T 3d31_A 147 KILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (348)
T ss_dssp SEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 99999999999999999999998876643 4899999999999875 58999999999999999999987653
No 94
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=3.9e-40 Score=367.96 Aligned_cols=203 Identities=22% Similarity=0.304 Sum_probs=168.5
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce--------------ec
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IR 226 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------~~ 226 (1171)
+.|+++|++|+|+. +++|+||||+|++||+++|+||||||||||+++|+|+++|++|.+.. .+
T Consensus 20 ~~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 96 (279)
T 2ihy_A 20 MLIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR 96 (279)
T ss_dssp EEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHH
T ss_pred ceEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHc
Confidence 46999999999963 57999999999999999999999999999999999999999876532 13
Q ss_pred CcEEEEecCCCC-Cc--ccHHHHHhcCCC--------CCH---HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChH
Q 001055 227 GTVAYVPQVSWI-FN--ATVRDNILFGSA--------FEP---ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 292 (1171)
Q Consensus 227 ~~i~~v~Q~~~l-~~--~Tv~eni~~g~~--------~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGG 292 (1171)
..|||++|++.+ +. .||+||+.++.. ... +++.++++..++.+.. +....+||||
T Consensus 97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~LSgG 165 (279)
T 2ihy_A 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKA-----------QQYIGYLSTG 165 (279)
T ss_dssp TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGT-----------TSBGGGSCHH
T ss_pred CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHh-----------cCChhhCCHH
Confidence 469999999864 44 499999998631 111 2344555666654332 2344689999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEE--EEEcCCcchhh-hcCEEEEEeCCEEEEec
Q 001055 293 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTR--VLVTNQLHFLS-QVDRIILVHEGMVKEEG 369 (1171)
Q Consensus 293 qrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tv--i~vtH~~~~l~-~~d~i~~l~~G~i~~~g 369 (1171)
|||||+|||||+.+|++|||||||++||+.+++.+++.+.+...+|+|+ |+||||++++. .||+|++|++|++++.|
T Consensus 166 qkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g 245 (279)
T 2ihy_A 166 EKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQG 245 (279)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999877664458999 99999999985 58999999999999999
Q ss_pred ChhHHhhc
Q 001055 370 TFEDLSNN 377 (1171)
Q Consensus 370 ~~~~l~~~ 377 (1171)
+++++.+.
T Consensus 246 ~~~~~~~~ 253 (279)
T 2ihy_A 246 AVEDILTS 253 (279)
T ss_dssp EHHHHCSH
T ss_pred CHHHHhcc
Confidence 99887643
No 95
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.4e-39 Score=376.33 Aligned_cols=202 Identities=24% Similarity=0.383 Sum_probs=171.5
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------------e
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------I 225 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------------~ 225 (1171)
.|+++|++++|+ ++++|+|+||++++||+++|+|||||||||||++|+|+++|++|.+.. .
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~ 79 (372)
T 1g29_1 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (372)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh
Confidence 489999999995 257999999999999999999999999999999999999999876422 1
Q ss_pred cCcEEEEecCCCCC-cccHHHHHhcCC---CCCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHH
Q 001055 226 RGTVAYVPQVSWIF-NATVRDNILFGS---AFEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 297 (1171)
Q Consensus 226 ~~~i~~v~Q~~~l~-~~Tv~eni~~g~---~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv 297 (1171)
++.||||+|++.+| ..||+|||.|+. .... +++.++++..++.+..+.. ..+|||||||||
T Consensus 80 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~-----------~~~LSGGq~QRv 148 (372)
T 1g29_1 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRK-----------PRELSGGQRQRV 148 (372)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCC-----------GGGSCHHHHHHH
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCC-----------cccCCHHHHHHH
Confidence 24599999999887 579999999862 1222 3455667777776544433 358999999999
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC-CCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHh
Q 001055 298 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS-GKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLS 375 (1171)
Q Consensus 298 ~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~-~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~ 375 (1171)
+|||||+.+|++||||||||+||+..++.+.+.+.+..++ |.|+|+||||++++. .||||++|++|++++.|+++++.
T Consensus 149 alArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (372)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999987765443 899999999999876 58999999999999999999887
Q ss_pred hc
Q 001055 376 NN 377 (1171)
Q Consensus 376 ~~ 377 (1171)
.+
T Consensus 229 ~~ 230 (372)
T 1g29_1 229 DK 230 (372)
T ss_dssp HS
T ss_pred hC
Confidence 54
No 96
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=5.4e-39 Score=352.77 Aligned_cols=196 Identities=19% Similarity=0.258 Sum_probs=168.7
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTV 229 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i 229 (1171)
.++++|++|+ ++|+|+||++++||+++|+||||||||||+++|+|+++|+ |.+.. .+..|
T Consensus 4 ~l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i 75 (249)
T 2qi9_C 4 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHR 75 (249)
T ss_dssp EEEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHE
T ss_pred EEEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceE
Confidence 5899999987 4899999999999999999999999999999999999999 86532 12359
Q ss_pred EEEecCCCCC-cccHHHHHhcCCCC--CHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccC
Q 001055 230 AYVPQVSWIF-NATVRDNILFGSAF--EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 306 (1171)
Q Consensus 230 ~~v~Q~~~l~-~~Tv~eni~~g~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~ 306 (1171)
||+||++.++ ..||+||+.++... +.+++.++++..++.+..+ ....+|||||||||+|||||+.+
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLG-----------RSTNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTT-----------SBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHHHHHHHHHcC
Confidence 9999999887 56999999987421 3556677777777754332 33468999999999999999999
Q ss_pred CC-------EEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhh-hcCEEEEEeCCEEEEecChhHHhh
Q 001055 307 SD-------VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVDRIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 307 ~~-------vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~-~~d~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
|+ +|||||||++||+.+++.+++.+.+...+|+|+|++|||++++. .||++++|++|++++.|+++++.+
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99 99999999999999999999987776556899999999999985 589999999999999999988865
No 97
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.7e-38 Score=350.21 Aligned_cols=197 Identities=20% Similarity=0.245 Sum_probs=157.7
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcC--CCCCCCccce-------------ec
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGE--LPPVSDASAV-------------IR 226 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~--~~~~~g~~~~-------------~~ 226 (1171)
.|+++|++|+|+. +++|+|+||++++||+++|+||||||||||+++|+|+ ++|++|.+.. .+
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~ 79 (250)
T 2d2e_A 3 QLEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERAR 79 (250)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHh
Confidence 5899999999963 5799999999999999999999999999999999998 7888876532 12
Q ss_pred CcEEEEecCCCCC-cccHHHHHhcCC----C--CC----HHHHHHHHHHcCch-HHHhcCCCCCccccCCCCCc-cChHH
Q 001055 227 GTVAYVPQVSWIF-NATVRDNILFGS----A--FE----PARYEKAIDVTSLQ-HDLDLLPGGDVTEIGERGVN-ISGGQ 293 (1171)
Q Consensus 227 ~~i~~v~Q~~~l~-~~Tv~eni~~g~----~--~~----~~~~~~~~~~~~l~-~~~~~~~~~~~~~i~~~g~~-LSGGq 293 (1171)
..++|++|+|.+| ..||+||+.++. . .. .+++.++++..++. +..+ ....+ |||||
T Consensus 80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~~~LSgGq 148 (250)
T 2d2e_A 80 KGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLS-----------RYLNEGFSGGE 148 (250)
T ss_dssp TTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGG-----------SBTTCC----H
T ss_pred CcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhc-----------CCcccCCCHHH
Confidence 3489999999887 469999997642 1 11 12334455555552 2222 22346 99999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh--cCEEEEEeCCEEEEecCh
Q 001055 294 KQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ--VDRIILVHEGMVKEEGTF 371 (1171)
Q Consensus 294 rqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~--~d~i~~l~~G~i~~~g~~ 371 (1171)
||||+|||||+.+|++|||||||++||+.+++.+++.+.+...+|+|+|+||||++++.. ||++++|++|++++.|++
T Consensus 149 kQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~ 228 (250)
T 2d2e_A 149 KKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGP 228 (250)
T ss_dssp HHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESH
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCH
Confidence 999999999999999999999999999999999999877765568999999999999886 499999999999999988
Q ss_pred h
Q 001055 372 E 372 (1171)
Q Consensus 372 ~ 372 (1171)
+
T Consensus 229 ~ 229 (250)
T 2d2e_A 229 E 229 (250)
T ss_dssp H
T ss_pred H
Confidence 7
No 98
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.4e-38 Score=352.15 Aligned_cols=197 Identities=23% Similarity=0.306 Sum_probs=165.8
Q ss_pred EEEEeeEEEcCCC-CCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee---------cCcEE-E
Q 001055 163 ISIRNGYFSWDSK-AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI---------RGTVA-Y 231 (1171)
Q Consensus 163 i~~~~~s~~~~~~-~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~---------~~~i~-~ 231 (1171)
|+++|++++|+.. ..+++|+|+||+++ |++++|+||||||||||+++|+|++ |++|.+... +..|+ |
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~ 79 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTN 79 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEEC
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEE
Confidence 7899999999631 01579999999999 9999999999999999999999999 998765321 34699 9
Q ss_pred EecCCCCCcccHHHHHhcCC---CCCHHHHHHHHHHcCch-HHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCC
Q 001055 232 VPQVSWIFNATVRDNILFGS---AFEPARYEKAIDVTSLQ-HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS 307 (1171)
Q Consensus 232 v~Q~~~l~~~Tv~eni~~g~---~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~ 307 (1171)
+||++.+ ..||+||+.++. ....+++.+.++..++. +. .+....+|||||||||+|||||+.+|
T Consensus 80 v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~~LSgGqkqRv~lAraL~~~p 147 (263)
T 2pjz_A 80 LPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEI-----------LRRKLYKLSAGQSVLVRTSLALASQP 147 (263)
T ss_dssp CGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGG-----------GGSBGGGSCHHHHHHHHHHHHHHTCC
T ss_pred eCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhH-----------hcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 9999998 899999998752 23345666677766654 33 23445689999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhh-hcC-EEEEEeCCEEEEecChhHHhh
Q 001055 308 DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS-QVD-RIILVHEGMVKEEGTFEDLSN 376 (1171)
Q Consensus 308 ~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~-~~d-~i~~l~~G~i~~~g~~~~l~~ 376 (1171)
+++||||||++||+.+++++++.+.+.. + |+|+||||++++. .|| ++++|++|++++.|+++++.+
T Consensus 148 ~lllLDEPts~LD~~~~~~l~~~L~~~~-~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 148 EIVGLDEPFENVDAARRHVISRYIKEYG-K--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHSC-S--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred CEEEEECCccccCHHHHHHHHHHHHHhc-C--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 9999999999999999999999776543 2 9999999999986 589 999999999999999988754
No 99
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.7e-38 Score=353.18 Aligned_cols=203 Identities=19% Similarity=0.245 Sum_probs=161.5
Q ss_pred CCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcC--CCCCCCcccee------------
Q 001055 160 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGE--LPPVSDASAVI------------ 225 (1171)
Q Consensus 160 ~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~--~~~~~g~~~~~------------ 225 (1171)
.+.|+++|++|+|+ ++++|+||||+|++||+++|+||||||||||+++|+|+ ++|++|.+...
T Consensus 18 ~~~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~ 94 (267)
T 2zu0_C 18 SHMLSIKDLHVSVE---DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 94 (267)
T ss_dssp --CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHH
T ss_pred CceEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 34699999999995 35799999999999999999999999999999999999 46777754321
Q ss_pred -cCcEEEEecCCCCC-cccHHHHHhcCC---------C-CCH----HHHHHHHHHcCchHHHhcCCCCCccccCCCCC-c
Q 001055 226 -RGTVAYVPQVSWIF-NATVRDNILFGS---------A-FEP----ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-N 288 (1171)
Q Consensus 226 -~~~i~~v~Q~~~l~-~~Tv~eni~~g~---------~-~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~-~ 288 (1171)
+..|+|++|++.++ ..||.||+.++. + .+. +++.++++..++... ....... +
T Consensus 95 ~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~----------~~~~~~~~~ 164 (267)
T 2zu0_C 95 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPED----------LLTRSVNVG 164 (267)
T ss_dssp HHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTT----------TTTSBTTTT
T ss_pred hhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChh----------HhcCCcccC
Confidence 12399999999887 569999986531 0 111 123334444443210 1122233 5
Q ss_pred cChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh--cCEEEEEeCCEEE
Q 001055 289 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ--VDRIILVHEGMVK 366 (1171)
Q Consensus 289 LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~--~d~i~~l~~G~i~ 366 (1171)
|||||||||+|||||+.+|++|||||||++||+.+++.+++.+.+...+|+|+|+||||++++.. |||+++|++|+++
T Consensus 165 LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~ 244 (267)
T 2zu0_C 165 FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIV 244 (267)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999877665568999999999999875 7999999999999
Q ss_pred EecChhHHh
Q 001055 367 EEGTFEDLS 375 (1171)
Q Consensus 367 ~~g~~~~l~ 375 (1171)
+.|+++++.
T Consensus 245 ~~g~~~~~~ 253 (267)
T 2zu0_C 245 KSGDFTLVK 253 (267)
T ss_dssp EEECTTHHH
T ss_pred EEcCHHHHh
Confidence 999987653
No 100
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=3.2e-38 Score=338.40 Aligned_cols=187 Identities=18% Similarity=0.317 Sum_probs=153.5
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-------ecCcEEEEec
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-------IRGTVAYVPQ 234 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-------~~~~i~~v~Q 234 (1171)
.|+++|++++|+ + ++|+|+||++++||+++|+||||||||||+++|+|+++|++|.+.. .+..|+|+||
T Consensus 10 ~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q 85 (214)
T 1sgw_A 10 KLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPE 85 (214)
T ss_dssp EEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECS
T ss_pred eEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeC
Confidence 699999999995 2 6999999999999999999999999999999999999999886543 2346999999
Q ss_pred CCCCCc-ccHHHHHhcCC-----CCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCC
Q 001055 235 VSWIFN-ATVRDNILFGS-----AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD 308 (1171)
Q Consensus 235 ~~~l~~-~Tv~eni~~g~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~ 308 (1171)
++.++. .||+||+.++. ..+.+++.++++..++... +..+.+|||||||||+|||||+.+|+
T Consensus 86 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~------------~~~~~~LSgGqkqrv~laraL~~~p~ 153 (214)
T 1sgw_A 86 EIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL------------KKKLGELSQGTIRRVQLASTLLVNAE 153 (214)
T ss_dssp SCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT------------TSBGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred CCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC------------CCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 998875 59999998752 1224455566666554321 33457899999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhh-cCEEEEEeCCEE
Q 001055 309 VFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQ-VDRIILVHEGMV 365 (1171)
Q Consensus 309 vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i 365 (1171)
++||||||++||+.+++.+++.+.+...+|+|+|++|||++++.. +|+++ +.+|+|
T Consensus 154 lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~-~~~~~~ 210 (214)
T 1sgw_A 154 IYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH-KYSTKI 210 (214)
T ss_dssp EEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG-GGBC--
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE-EeCCcc
Confidence 999999999999999999999877655458999999999999876 46665 445543
No 101
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=100.00 E-value=2.3e-36 Score=369.00 Aligned_cols=170 Identities=12% Similarity=0.027 Sum_probs=122.3
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
++++++++.|++- ..+| +..+++|++++|+|+||||||||++.++|...|. |+ +.+.+
T Consensus 258 ~~~~~l~~g~~~l-d~vL---~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~ 315 (525)
T 1tf7_A 258 SSNVRVSSGVVRL-DEMC---GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILF 315 (525)
T ss_dssp CCCCEECCSCHHH-HHHT---TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEE
T ss_pred cccceeecChHHH-HHHh---CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEE
Confidence 4556777666320 1233 4499999999999999999999999999999885 53 01345
Q ss_pred EcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 001055 867 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 946 (1171)
Q Consensus 867 v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLl 946 (1171)
++|++. ..+..+...+. .. + .++.. .|+..........|||||+||+++||++..+|++||
T Consensus 316 ~~ee~~---~~l~~~~~~~g-~~---~---------~~~~~---~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~lli 376 (525)
T 1tf7_A 316 AYEESR---AQLLRNAYSWG-MD---F---------EEMER---QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIA 376 (525)
T ss_dssp ESSSCH---HHHHHHHHTTS-CC---H---------HHHHH---TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred EEeCCH---HHHHHHHHHcC-CC---H---------HHHHh---CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEE
Confidence 555542 12333221111 11 1 11111 233333344456799999999999999999999999
Q ss_pred EecCCcCCCHH-----HHHHHHHHHHHHc-CCcEEEEEecCh----------hhhhh-cCEEEEEeCcE
Q 001055 947 LDEATAAVDVR-----TDALIQKTIREEF-KSCTMLIIAHRL----------NTIID-CDRILLLDSGR 998 (1171)
Q Consensus 947 LDEpTs~LD~~-----t~~~i~~~l~~~~-~~~tvi~vtH~~----------~~~~~-~d~i~vl~~G~ 998 (1171)
+| ||++||.. ..+.+.+.++.+. .+.|+|+|+|+. ..+.. ||+|++|++|+
T Consensus 377 lD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 377 ID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp EE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred Ec-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 99 99999999 8888888887764 479999999999 66766 99999999887
No 102
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=6.3e-33 Score=340.56 Aligned_cols=201 Identities=21% Similarity=0.229 Sum_probs=164.8
Q ss_pred CCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCC-
Q 001055 160 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI- 238 (1171)
Q Consensus 160 ~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l- 238 (1171)
.+.++++|+++.|++ ..|+++||++++||+++|+||||||||||+++|+|+++|++|.+.. +..|||+||++.+
T Consensus 355 ~~~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-~~~i~~v~Q~~~~~ 429 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-DLTVAYKPQYIKAE 429 (607)
T ss_dssp CEEEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-CCCEEEECSSCCCC
T ss_pred ceEEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-eeEEEEEecCccCC
Confidence 346999999999953 4799999999999999999999999999999999999999987764 5679999999876
Q ss_pred CcccHHHHHhcC-CC--CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCc
Q 001055 239 FNATVRDNILFG-SA--FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDP 315 (1171)
Q Consensus 239 ~~~Tv~eni~~g-~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEp 315 (1171)
+..||.|++... .. .+.+...++++..++.+. ......+|||||||||+|||||+.+|++||||||
T Consensus 430 ~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEP 498 (607)
T 3bk7_A 430 YEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDL-----------YDRNVEDLSGGELQRVAIAATLLRDADIYLLDEP 498 (607)
T ss_dssp CSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTT-----------TTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECT
T ss_pred CCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchH-----------hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 578999998753 10 012233344444443221 2334568999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhc-cCCCEEEEEcCCcchhhh-cCEEEEEeC--CEEEEecChhHHhh
Q 001055 316 LSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHE--GMVKEEGTFEDLSN 376 (1171)
Q Consensus 316 ts~LD~~~~~~l~~~l~~~~-~~~~tvi~vtH~~~~l~~-~d~i~~l~~--G~i~~~g~~~~l~~ 376 (1171)
|+|||+.++..+++.+.+.. ..|+|+|+||||++++.. ||||++|++ |.+...|+++++..
T Consensus 499 t~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 499 SAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 99999999999999776654 358999999999999875 899999986 78888899887754
No 103
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=5e-33 Score=338.34 Aligned_cols=201 Identities=20% Similarity=0.227 Sum_probs=163.3
Q ss_pred CCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCC-
Q 001055 160 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI- 238 (1171)
Q Consensus 160 ~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l- 238 (1171)
.+.++++|+++.|++ ..|+++||+|++||+++|+||||||||||+++|+|+++|++|.+.. ...|||+||++..
T Consensus 285 ~~~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-~~~i~~v~Q~~~~~ 359 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-DLTVAYKPQYIKAD 359 (538)
T ss_dssp CEEEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-CCCEEEECSSCCCC
T ss_pred CeEEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-CceEEEEecCCcCC
Confidence 346999999999952 4799999999999999999999999999999999999999988764 5579999999876
Q ss_pred CcccHHHHHhcC-CC--CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCc
Q 001055 239 FNATVRDNILFG-SA--FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDP 315 (1171)
Q Consensus 239 ~~~Tv~eni~~g-~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEp 315 (1171)
+..||.|++... .. .+.+...++++..++.+ .......+|||||||||+|||||+.+|++||||||
T Consensus 360 ~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEP 428 (538)
T 1yqt_A 360 YEGTVYELLSKIDASKLNSNFYKTELLKPLGIID-----------LYDREVNELSGGELQRVAIAATLLRDADIYLLDEP 428 (538)
T ss_dssp CSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGG-----------GTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECT
T ss_pred CCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChh-----------hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 578999988642 00 11222223333333321 23344578999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhhc-cCCCEEEEEcCCcchhhh-cCEEEEEeC--CEEEEecChhHHhh
Q 001055 316 LSALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHE--GMVKEEGTFEDLSN 376 (1171)
Q Consensus 316 ts~LD~~~~~~l~~~l~~~~-~~~~tvi~vtH~~~~l~~-~d~i~~l~~--G~i~~~g~~~~l~~ 376 (1171)
|+|||+.++..+++.+.+.. ..|+|+|+||||++++.. ||||++|++ |++...|+++++..
T Consensus 429 t~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 429 SAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 99999999999999776654 348999999999999875 899999986 78888899887754
No 104
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.98 E-value=1.5e-32 Score=333.04 Aligned_cols=200 Identities=19% Similarity=0.248 Sum_probs=162.6
Q ss_pred CCcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCC-
Q 001055 160 LPAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI- 238 (1171)
Q Consensus 160 ~~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l- 238 (1171)
.+.++++|+++.|+. ..|+++||+|++||++||+||||||||||+++|+|+++|++|.+...+..++|+||++..
T Consensus 267 ~~~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~ 342 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPN 342 (538)
T ss_dssp CEEEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCC
T ss_pred cceEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccc
Confidence 346899999999963 468889999999999999999999999999999999999999887766789999999765
Q ss_pred CcccHHHHHhcCCC----CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeC
Q 001055 239 FNATVRDNILFGSA----FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 314 (1171)
Q Consensus 239 ~~~Tv~eni~~g~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDE 314 (1171)
+..||++|+.+... .......++++..++.+. .+....+|||||||||+|||||+.+|+||||||
T Consensus 343 ~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDE 411 (538)
T 3ozx_A 343 YDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRL-----------LESNVNDLSGGELQKLYIAATLAKEADLYVLDQ 411 (538)
T ss_dssp CSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGC-----------TTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred cCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHH-----------hcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 57899999976321 112233344444444322 234457899999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhhcc-CCCEEEEEcCCcchhhh-cCEEEEEeC--CEEEEecChhHH
Q 001055 315 PLSALDAHVGRQVFDRCIRGEL-SGKTRVLVTNQLHFLSQ-VDRIILVHE--GMVKEEGTFEDL 374 (1171)
Q Consensus 315 pts~LD~~~~~~l~~~l~~~~~-~~~tvi~vtH~~~~l~~-~d~i~~l~~--G~i~~~g~~~~l 374 (1171)
||+|||+.++..+++.+.+... .|+|+|+||||++++.. ||||++|++ |.+...+++.++
T Consensus 412 PT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~ 475 (538)
T 3ozx_A 412 PSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTL 475 (538)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred CccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHH
Confidence 9999999999999998776543 58999999999999875 899999986 455556665544
No 105
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.97 E-value=3.6e-31 Score=334.40 Aligned_cols=196 Identities=20% Similarity=0.262 Sum_probs=159.8
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheE
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
.+...|++++|++. ++|+|+||+|++||++||+||||||||||+++|+| |+| +|.+... +.+++
T Consensus 435 ~L~~~~ls~~yg~~--~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~~~ 498 (986)
T 2iw3_A 435 DLCNCEFSLAYGAK--ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECRTV 498 (986)
T ss_dssp EEEEEEEEEEETTE--EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSCEE
T ss_pred eeEEeeEEEEECCE--EeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------ceeEE
Confidence 58888999999753 69999999999999999999999999999999995 554 4544311 12478
Q ss_pred EEcCCc-ccc-cccHHhhccCC-CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 866 IIPQSP-VLF-SGTVRFNLDPF-SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 866 ~v~Q~~-~lf-~~tv~~nl~~~-~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
|++|++ .++ ..|+.+|+... ... ++++.+.++..++. +...+....+||||||||++|||||+.+|
T Consensus 499 ~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~----------~~~~~~~~~~LSGGqkQRvaLArAL~~~P 567 (986)
T 2iw3_A 499 YVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFT----------DEMIAMPISALSGGWKMKLALARAVLRNA 567 (986)
T ss_dssp ETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCC----------HHHHHSBGGGCCHHHHHHHHHHHHHHTTC
T ss_pred EEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCC----------hhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 999986 444 45999998641 111 45566666665542 12233445679999999999999999999
Q ss_pred CEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh-cCEEEEEeCcEEE-EecChhHHhh
Q 001055 943 KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILLLDSGRVL-EYDTPEELLS 1010 (1171)
Q Consensus 943 ~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~-~~g~~~el~~ 1010 (1171)
+||||||||++||+.+.+.+.+.|++ .++|+|+||||++++.. ||+|++|++|+++ ..|+++++..
T Consensus 568 ~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 568 DILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred CEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 99999999999999999999999998 68999999999999987 9999999999997 5799999874
No 106
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.2e-32 Score=329.93 Aligned_cols=198 Identities=23% Similarity=0.297 Sum_probs=162.0
Q ss_pred EeeEEEcCCCCCCCceeeeeEEecCC-----CEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCC-C
Q 001055 166 RNGYFSWDSKAERPTLLNINLDIPVG-----SLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI-F 239 (1171)
Q Consensus 166 ~~~s~~~~~~~~~~~l~~isl~i~~G-----e~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l-~ 239 (1171)
++++|+|+. .+.+++++||++++| |+++|+||||||||||+++|+|+++|++|... .+..++|+||+... +
T Consensus 350 ~~~~~~y~~--~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~-~~~~i~~~~q~~~~~~ 426 (608)
T 3j16_B 350 ASRAFSYPS--LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI-PKLNVSMKPQKIAPKF 426 (608)
T ss_dssp SSSCCEECC--EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC-CSCCEEEECSSCCCCC
T ss_pred cceeEEecC--cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc-cCCcEEEecccccccC
Confidence 667888863 235789999999999 88999999999999999999999999988642 34469999999765 6
Q ss_pred cccHHHHHhcCC---CCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcC
Q 001055 240 NATVRDNILFGS---AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL 316 (1171)
Q Consensus 240 ~~Tv~eni~~g~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpt 316 (1171)
..||++|+.... ..+.....++++..++.+. ......+|||||||||+|||||+.+|+||||||||
T Consensus 427 ~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~-----------~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT 495 (608)
T 3j16_B 427 PGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDI-----------IDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPS 495 (608)
T ss_dssp CSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTT-----------SSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred CccHHHHHHHHhhcccccHHHHHHHHHHcCChhh-----------hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 789999986421 1233444455555554332 23345689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhc-cCCCEEEEEcCCcchhhh-cCEEEEEeC--CEEEEecChhHHhhc
Q 001055 317 SALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHE--GMVKEEGTFEDLSNN 377 (1171)
Q Consensus 317 s~LD~~~~~~l~~~l~~~~-~~~~tvi~vtH~~~~l~~-~d~i~~l~~--G~i~~~g~~~~l~~~ 377 (1171)
+|||+.++..+++.+.+.. ..|+|+|+||||++++.. ||||++|++ |+++..|+++++++.
T Consensus 496 ~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 496 AYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999999998776653 358999999999999875 899999996 899999999988764
No 107
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.97 E-value=7.9e-32 Score=338.35 Aligned_cols=203 Identities=23% Similarity=0.351 Sum_probs=138.9
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHH---------------------HHHhcCCCCC-------CceEEECCEecC
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSML---------------------NTLFRIVELE-------RGRILIDGFDIA 853 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl---------------------~~l~g~~~p~-------~G~I~i~g~~i~ 853 (1171)
.+|+||||+|++||++||+||||||||||+ +++.|+..|+ .|.|.++|.++.
T Consensus 32 ~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~ 111 (670)
T 3ux8_A 32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTS 111 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC--
T ss_pred cceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhh
Confidence 699999999999999999999999999998 8999999998 455666665543
Q ss_pred CCChHHHhhheEEEcCCcccc--------------------cccHHhhccCCCCC--C--HHHH-----HHHHHHhcHHH
Q 001055 854 KFGLMDLRKILGIIPQSPVLF--------------------SGTVRFNLDPFSEH--S--DADL-----WEALERAHLKD 904 (1171)
Q Consensus 854 ~~~~~~~r~~i~~v~Q~~~lf--------------------~~tv~~nl~~~~~~--~--~~~i-----~~~l~~~~~~~ 904 (1171)
.. .++.+++|+|.+.++ ..|+++|+.++... . +.+. .+.++.. +
T Consensus 112 ~~----~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 184 (670)
T 3ux8_A 112 RN----PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL---G 184 (670)
T ss_dssp -------CCBHHHHTTCC-------------------------CC--------------------------CHHHH---H
T ss_pred cc----chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH---H
Confidence 22 244566666654322 34889998754211 1 0111 1111111 2
Q ss_pred HHHHccCCcchh-hhcCCCCCChhHHHHHHHHHHhccCCC--EEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEec
Q 001055 905 AIRRNSLGLDAQ-VSEAGENFSVGQRQLLSLSRALLRRSK--ILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAH 980 (1171)
Q Consensus 905 ~i~~lp~gl~~~-~~~~~~~LSgGqkqrl~lArall~~p~--iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH 980 (1171)
.++. .|++.. .+....+|||||||||+|||||+.+|+ ||||||||++||+.+...+++.|+++. .++|||+|||
T Consensus 185 ~l~~--~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtH 262 (670)
T 3ux8_A 185 FLQN--VGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 262 (670)
T ss_dssp HHHH--TTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECC
T ss_pred HHHH--cCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 2333 244332 355667899999999999999999998 999999999999999999999999875 4799999999
Q ss_pred ChhhhhhcCEEEEE------eCcEEEEecChhHHhhcCC
Q 001055 981 RLNTIIDCDRILLL------DSGRVLEYDTPEELLSNEG 1013 (1171)
Q Consensus 981 ~~~~~~~~d~i~vl------~~G~i~~~g~~~el~~~~~ 1013 (1171)
|++.+..||+|++| ++|++++.|+++++.+.+.
T Consensus 263 d~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~ 301 (670)
T 3ux8_A 263 DEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPN 301 (670)
T ss_dssp CHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTT
T ss_pred CHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCch
Confidence 99988889999999 8999999999999987654
No 108
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.96 E-value=5.3e-33 Score=311.77 Aligned_cols=205 Identities=15% Similarity=0.169 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccCCCCCCCCCCC-CccEEEEeeEEEeCCCCCCcceeeeEEEcCCC
Q 001055 737 LLTAVLRLASLAENSLNAVERVGNYIELPSEAPLVIESNRPPPGWPS-SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSD 815 (1171)
Q Consensus 737 ~~~~~~~~~~~~~~~~~a~~R~~~~~~~~~e~~~~~~~~~~~~~~~~-~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge 815 (1171)
++..+......+.....+.+|+.++++.+.+... . ...|+. .+.|+++||+|+|+ .++|+++||+|++|+
T Consensus 57 ~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~---~---~~~~~~~~~~i~~~~vs~~y~---~~vL~~vsl~i~~Ge 127 (305)
T 2v9p_A 57 HVKDCATMVRHYLRAETQALSMPAYIKARCKLAT---G---EGSWKSILTFFNYQNIELITF---INALKLWLKGIPKKN 127 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCC---S---SCCTHHHHHHHHHTTCCHHHH---HHHHHHHHHTCTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC---C---CCcccccCCeEEEEEEEEEcC---hhhhccceEEecCCC
Confidence 3444444555566677888888888765432110 0 011221 23589999999996 369999999999999
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHh-hccCCCCCCHHHHH
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRF-NLDPFSEHSDADLW 894 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~-nl~~~~~~~~~~i~ 894 (1171)
++||+||||||||||+++|+|++ +|+| +++++|++.+|.+|+++ |+.+....++
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ti~~~ni~~~~~~~~---- 182 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLASLADTRAALVDDATH---- 182 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGGGTTCSCEEEEEECH----
T ss_pred EEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccccccHHHHhhccCccccH----
Confidence 99999999999999999999999 8988 35789999999999997 8876533332
Q ss_pred HHHHHhcHHHHHHH-ccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCc
Q 001055 895 EALERAHLKDAIRR-NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC 973 (1171)
Q Consensus 895 ~~l~~~~~~~~i~~-lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~ 973 (1171)
+++++++. +|.|++ +.+|||||||| ||||+++|+||| ||+||+.+++.+..
T Consensus 183 ------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------- 234 (305)
T 2v9p_A 183 ------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------- 234 (305)
T ss_dssp ------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG---------
T ss_pred ------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH---------
Confidence 34567777 788876 67899999999 999999999999 99999999988862
Q ss_pred EEEEEecChhhhhhcCEEEEEeCcEEEEecChhHH
Q 001055 974 TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 1008 (1171)
Q Consensus 974 tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el 1008 (1171)
+|||++.+..||+| +|++|+|++.|+++++
T Consensus 235 ----ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 235 ----LHSRVQTFRFEQPC-TDESGEQPFNITDADW 264 (305)
T ss_dssp ----GTTTEEEEECCCCC-CCC---CCCCCCHHHH
T ss_pred ----HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH
Confidence 29999998889999 9999999999999999
No 109
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.96 E-value=4.3e-33 Score=312.51 Aligned_cols=233 Identities=15% Similarity=0.104 Sum_probs=180.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCCcEEEEeeEEEcCCCCC
Q 001055 98 GDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPLTSGLPAISIRNGYFSWDSKAE 177 (1171)
Q Consensus 98 ~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~~~~ 177 (1171)
+..+-+.+.+++.+..+ ..|+..+...+..+..+.++..||.+++..+++...+..........|+++|++|+|+
T Consensus 38 ~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~---- 112 (305)
T 2v9p_A 38 AAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITF---- 112 (305)
T ss_dssp TTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSSCCTHHHHHHHHHTTCCHHHH----
T ss_pred hcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcccccCCeEEEEEEEEEcC----
Confidence 34455677777777666 4799999999999999999999999999875432211111000012488999999996
Q ss_pred CCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHH-HHhcCCCCCHH
Q 001055 178 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRD-NILFGSAFEPA 256 (1171)
Q Consensus 178 ~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~e-ni~~g~~~~~~ 256 (1171)
+++|+++||+|++|++++|+||||||||||+++|+|++ +|.+ ++|++|++++|.+|+++ ||.++...++
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------~~~v~q~~~lf~~ti~~~ni~~~~~~~~- 182 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------LSFANHKSHFWLASLADTRAALVDDATH- 182 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------ECGGGTTSGGGGGGGTTCSCEEEEEECH-
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------EEEecCccccccccHHHHhhccCccccH-
Confidence 46999999999999999999999999999999999998 4544 57889999999999998 9998743332
Q ss_pred HHHHHHHHcCchHHHhc-CCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhc
Q 001055 257 RYEKAIDVTSLQHDLDL-LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE 335 (1171)
Q Consensus 257 ~~~~~~~~~~l~~~~~~-~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~ 335 (1171)
.. .+.++. ++.+.+ |.+|||||||| ||||+++|+||| ||+||+.+++.+..
T Consensus 183 ~~---------~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~------ 234 (305)
T 2v9p_A 183 AC---------WRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY------ 234 (305)
T ss_dssp HH---------HHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG------
T ss_pred HH---------HHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH------
Confidence 12 223333 554432 67999999999 999999999999 99999998877641
Q ss_pred cCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHhhcchHHHHHH
Q 001055 336 LSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLSNNGELFQKLM 385 (1171)
Q Consensus 336 ~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 385 (1171)
+||++..+..+|+| +|++|++++.|+++++ .+.|..++
T Consensus 235 --------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el---~~~y~~l~ 272 (305)
T 2v9p_A 235 --------LHSRVQTFRFEQPC-TDESGEQPFNITDADW---KSFFVRLW 272 (305)
T ss_dssp --------GTTTEEEEECCCCC-CCC---CCCCCCHHHH---HHHHHHST
T ss_pred --------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH---HHHHHHHH
Confidence 29999999899999 9999999999999998 45555554
No 110
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.95 E-value=6.5e-28 Score=286.54 Aligned_cols=200 Identities=18% Similarity=0.196 Sum_probs=147.2
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--------------------------------------CCCc
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE--------------------------------------LERG 843 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~--------------------------------------p~~G 843 (1171)
.++++++|++.+| +++|+||||||||||+++|.++.. +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4799999999999 999999999999999999976663 4578
Q ss_pred eEEECCEecCCCChHHHhhh-eEEEcCCcccccccHHhhccCCCCCCH---HH---------------------------
Q 001055 844 RILIDGFDIAKFGLMDLRKI-LGIIPQSPVLFSGTVRFNLDPFSEHSD---AD--------------------------- 892 (1171)
Q Consensus 844 ~I~i~g~~i~~~~~~~~r~~-i~~v~Q~~~lf~~tv~~nl~~~~~~~~---~~--------------------------- 892 (1171)
++++||.+++..+..++... +++++|++.++-.+..++..+...... ..
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~ 207 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP 207 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 99999999976666666666 899999987765544332221111100 00
Q ss_pred -----------HHHHHHH-----------------hcHHHHHHHccC------------------Ccch---hhhcCCCC
Q 001055 893 -----------LWEALER-----------------AHLKDAIRRNSL------------------GLDA---QVSEAGEN 923 (1171)
Q Consensus 893 -----------i~~~l~~-----------------~~~~~~i~~lp~------------------gl~~---~~~~~~~~ 923 (1171)
..+.+.. ..+.+.+..+.. |++. .+...+..
T Consensus 208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 287 (415)
T 4aby_A 208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE 287 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence 0000000 011122222211 1111 12222222
Q ss_pred --------CChhHHHHHHHHHHhccCC--CEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEE
Q 001055 924 --------FSVGQRQLLSLSRALLRRS--KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILL 993 (1171)
Q Consensus 924 --------LSgGqkqrl~lArall~~p--~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~v 993 (1171)
|||||||||+|||+|+.+| ++|||||||++||+.+...+.+.|+++.+++|||+|||+++.+..||++++
T Consensus 288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~ 367 (415)
T 4aby_A 288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYK 367 (415)
T ss_dssp CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEE
T ss_pred cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEE
Confidence 7999999999999999999 999999999999999999999999998778999999999998877999999
Q ss_pred E----eCcEEEEe
Q 001055 994 L----DSGRVLEY 1002 (1171)
Q Consensus 994 l----~~G~i~~~ 1002 (1171)
| ++|+++..
T Consensus 368 l~k~~~~G~~~~~ 380 (415)
T 4aby_A 368 VEKQVEDGRTVSH 380 (415)
T ss_dssp EEEEEETTEEEEE
T ss_pred EEEeccCCceEEE
Confidence 9 99998765
No 111
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6.1e-31 Score=312.73 Aligned_cols=189 Identities=12% Similarity=0.068 Sum_probs=153.5
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc-e-EEECCEecCCCChHHHhhh
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG-R-ILIDGFDIAKFGLMDLRKI 863 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G-~-I~i~g~~i~~~~~~~~r~~ 863 (1171)
.++++||+++|+ ++||++++|++++|+||||||||||+++|+|++.|++| + |.+|| + .|+.
T Consensus 118 mi~~~nl~~~y~--------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~~ 180 (460)
T 2npi_A 118 MKYIYNLHFMLE--------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQP 180 (460)
T ss_dssp HHHHHHHHHHHH--------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTSC
T ss_pred hhhhhhhhehhh--------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccCC
Confidence 478888888884 79999999999999999999999999999999999999 9 99998 1 3678
Q ss_pred eEEEcCCccccc----ccHHhhccCCCCC-----CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001055 864 LGIIPQSPVLFS----GTVRFNLDPFSEH-----SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 934 (1171)
Q Consensus 864 i~~v~Q~~~lf~----~tv~~nl~~~~~~-----~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~l 934 (1171)
++++||++.+|. .|+++|+ +.... .++.+.+ .++. .|++...+ ..+|||||||||+|
T Consensus 181 i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~---------ll~~--~gl~~~~~--~~~LSgGq~qrlal 246 (460)
T 2npi_A 181 IFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQP---------MVKN--FGLERINE--NKDLYLECISQLGQ 246 (460)
T ss_dssp SSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCC---------EECC--CCSSSGGG--CHHHHHHHHHHHHH
T ss_pred eeeeccchhhcccccccchhhhh-cccccccCcchHHHHHH---------HHHH--hCCCcccc--hhhhhHHHHHHHHH
Confidence 999999986542 3899888 43221 0011111 1111 35554443 56899999999999
Q ss_pred HHH--hccCCCE----EEEec-CCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChh------hhhh-cCE-----EEEEe
Q 001055 935 SRA--LLRRSKI----LVLDE-ATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN------TIID-CDR-----ILLLD 995 (1171)
Q Consensus 935 Ara--ll~~p~i----LlLDE-pTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~------~~~~-~d~-----i~vl~ 995 (1171)
||| |+.+|++ ||||| ||++||+. .+.+.+.+++ .+.|+|+|+|+.+ ++.. ||+ |++|+
T Consensus 247 Ara~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~--~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~ 323 (460)
T 2npi_A 247 VVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK--LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIP 323 (460)
T ss_dssp HHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH--TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEEC
T ss_pred HHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH--hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEe
Confidence 999 9999999 99999 99999999 7777777776 3789999999987 5555 999 99999
Q ss_pred -CcEEEEecChhHHh
Q 001055 996 -SGRVLEYDTPEELL 1009 (1171)
Q Consensus 996 -~G~i~~~g~~~el~ 1009 (1171)
+|+|+ .|+++++.
T Consensus 324 k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 324 KLDGVS-AVDDVYKR 337 (460)
T ss_dssp CCTTCC-CCCHHHHH
T ss_pred CCCcEE-ECCHHHHh
Confidence 99999 99998874
No 112
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.95 E-value=4.3e-27 Score=297.65 Aligned_cols=132 Identities=22% Similarity=0.369 Sum_probs=104.5
Q ss_pred ccHHHHHhcCCCCC-HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCC---CEEEEeCcC
Q 001055 241 ATVRDNILFGSAFE-PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS---DVFIFDDPL 316 (1171)
Q Consensus 241 ~Tv~eni~~g~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~---~vllLDEpt 316 (1171)
.||.|++.|..... ..+..+.++..++.. ..+|..+.+|||||||||+|||||+++| +||||||||
T Consensus 767 ~tv~eal~f~~~~~~~~~~~~~L~~vGL~~----------~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPT 836 (916)
T 3pih_A 767 MTVDEALEFFKNIPSIKRTLQVLHDVGLGY----------VKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPT 836 (916)
T ss_dssp SBHHHHHHHTTTCHHHHHHHHHHHHTTGGG----------SBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTT
T ss_pred CCHHHHHHHHhcchhHHHHHHHHHHcCCch----------hhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCC
Confidence 36666666543221 122334444444422 2356778899999999999999999875 699999999
Q ss_pred CCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEE------eCCEEEEecChhHHhhcchHHH
Q 001055 317 SALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV------HEGMVKEEGTFEDLSNNGELFQ 382 (1171)
Q Consensus 317 s~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l------~~G~i~~~g~~~~l~~~~~~~~ 382 (1171)
+|||+.+++.+.+.+.+...+|+|+|+||||++++..||+|++| ++|+|+++|+++++.++...|.
T Consensus 837 sGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~~syt 908 (916)
T 3pih_A 837 VGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSYT 908 (916)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCTTCHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCCchHH
Confidence 99999999999998777666799999999999999999999999 8999999999999987755443
No 113
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.94 E-value=2e-26 Score=289.30 Aligned_cols=96 Identities=19% Similarity=0.416 Sum_probs=87.9
Q ss_pred cCCCCCccChHHHHHHHHHHHhccC---CCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEE
Q 001055 282 IGERGVNISGGQKQRVSMARAVYSN---SDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 358 (1171)
Q Consensus 282 i~~~g~~LSGGqrqRv~LAraL~~~---~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~ 358 (1171)
++....+|||||||||+|||+|+.+ |+||||||||+|||+...+.+++.+.+....|.|||+||||++++..||||+
T Consensus 724 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii 803 (842)
T 2vf7_A 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVL 803 (842)
T ss_dssp TTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE
T ss_pred ccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEE
Confidence 4666789999999999999999996 7999999999999999999999987776667999999999999998799999
Q ss_pred EE------eCCEEEEecChhHHhhc
Q 001055 359 LV------HEGMVKEEGTFEDLSNN 377 (1171)
Q Consensus 359 ~l------~~G~i~~~g~~~~l~~~ 377 (1171)
+| ++|+|+++|+++++.+.
T Consensus 804 ~L~p~~g~~~G~Iv~~g~~~el~~~ 828 (842)
T 2vf7_A 804 DIGPGAGEDGGRLVAQGTPAEVAQA 828 (842)
T ss_dssp EECSSSGGGCCSEEEEECHHHHTTC
T ss_pred EECCCCCCCCCEEEEEcCHHHHHhC
Confidence 99 69999999999998765
No 114
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.94 E-value=3.2e-26 Score=286.85 Aligned_cols=98 Identities=27% Similarity=0.430 Sum_probs=88.6
Q ss_pred cCCCCCccChHHHHHHHHHHHhccCC---CEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEE
Q 001055 282 IGERGVNISGGQKQRVSMARAVYSNS---DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 358 (1171)
Q Consensus 282 i~~~g~~LSGGqrqRv~LAraL~~~~---~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~ 358 (1171)
.+....+|||||||||+|||+|+.+| +||||||||+|||+...+.+++.+.+....|.|+|+||||++++..||||+
T Consensus 839 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIi 918 (972)
T 2r6f_A 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYII 918 (972)
T ss_dssp TTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE
T ss_pred ccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEE
Confidence 45667899999999999999999875 999999999999999999999988776667999999999999998899999
Q ss_pred EE------eCCEEEEecChhHHhhcch
Q 001055 359 LV------HEGMVKEEGTFEDLSNNGE 379 (1171)
Q Consensus 359 ~l------~~G~i~~~g~~~~l~~~~~ 379 (1171)
+| ++|++++.|+++++.+...
T Consensus 919 vL~p~gG~~~G~Iv~~g~~~el~~~~~ 945 (972)
T 2r6f_A 919 DLGPEGGDRGGQIVAVGTPEEVAEVKE 945 (972)
T ss_dssp EECSSSTTSCCSEEEEESHHHHHTCTT
T ss_pred EEcCCCCCCCCEEEEecCHHHHHhCch
Confidence 99 6899999999999976543
No 115
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.93 E-value=5e-26 Score=286.20 Aligned_cols=98 Identities=28% Similarity=0.411 Sum_probs=88.3
Q ss_pred cCCCCCccChHHHHHHHHHHHhccCC---CEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEE
Q 001055 282 IGERGVNISGGQKQRVSMARAVYSNS---DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 358 (1171)
Q Consensus 282 i~~~g~~LSGGqrqRv~LAraL~~~~---~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~ 358 (1171)
.+....+|||||||||+|||+|+.+| +||||||||+|||+...+.+++.+.+....|.|+|+||||++++..||+|+
T Consensus 857 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIi 936 (993)
T 2ygr_A 857 LGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWII 936 (993)
T ss_dssp TTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEE
T ss_pred ccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEE
Confidence 45667899999999999999999865 999999999999999999999987776667999999999999998899999
Q ss_pred EE------eCCEEEEecChhHHhhcch
Q 001055 359 LV------HEGMVKEEGTFEDLSNNGE 379 (1171)
Q Consensus 359 ~l------~~G~i~~~g~~~~l~~~~~ 379 (1171)
+| ++|+++++|+++++.+...
T Consensus 937 vL~p~gg~~~G~Iv~~G~~~el~~~~~ 963 (993)
T 2ygr_A 937 DLGPEGGAGGGTVVAQGTPEDVAAVPA 963 (993)
T ss_dssp EEESSSTTSCSEEEEEECHHHHHHCTT
T ss_pred EECCCcCCCCCEEEEecCHHHHHhCCH
Confidence 99 6899999999999876543
No 116
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.2e-28 Score=293.06 Aligned_cols=188 Identities=16% Similarity=0.078 Sum_probs=141.9
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCC-c-cce---ecCcEEEEecC
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD-A-SAV---IRGTVAYVPQV 235 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g-~-~~~---~~~~i~~v~Q~ 235 (1171)
+.++++|++|+|+ ++||++++|++++|+||||||||||+|+|+|+++|++| . +.. .+..++|+||+
T Consensus 117 ~mi~~~nl~~~y~---------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~ 187 (460)
T 2npi_A 117 TMKYIYNLHFMLE---------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGC 187 (460)
T ss_dssp THHHHHHHHHHHH---------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSC
T ss_pred chhhhhhhhehhh---------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccc
Confidence 3567777777773 69999999999999999999999999999999999988 6 432 24469999999
Q ss_pred CCCC----cccHHHHHhcCCCC--C---HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHH--hc
Q 001055 236 SWIF----NATVRDNILFGSAF--E---PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA--VY 304 (1171)
Q Consensus 236 ~~l~----~~Tv~eni~~g~~~--~---~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAra--L~ 304 (1171)
+.++ ..||+||+ |+... . .++...+++..++. ... + ..+|||||||||+|||| |+
T Consensus 188 ~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~gl~-----------~~~-~-~~~LSgGq~qrlalAra~rL~ 253 (460)
T 2npi_A 188 ISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFGLE-----------RIN-E-NKDLYLECISQLGQVVGQRLH 253 (460)
T ss_dssp CEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCCSS-----------SGG-G-CHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccccccchhhhh-cccccccCcchHHHHHHHHHHhCCC-----------ccc-c-hhhhhHHHHHHHHHHHHHHhc
Confidence 8542 35999999 75321 0 00111111111111 111 2 56899999999999999 99
Q ss_pred cCCCE----EEEeC-cCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcc------hhh-hcCE-----EEEEe-CCEEE
Q 001055 305 SNSDV----FIFDD-PLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLH------FLS-QVDR-----IILVH-EGMVK 366 (1171)
Q Consensus 305 ~~~~v----llLDE-pts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~------~l~-~~d~-----i~~l~-~G~i~ 366 (1171)
.+|++ ||||| ||++||+. .+.+.+.+ +. .++|+|+|||+.. ++. .+|| |++|+ +|+++
T Consensus 254 ~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~-~~--~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv 329 (460)
T 2npi_A 254 LDPQVRRSGCIVDTPSISQLDEN-LAELHHII-EK--LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS 329 (460)
T ss_dssp HCHHHHHSCEEEECCCGGGSCSS-CHHHHHHH-HH--TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC
T ss_pred cCcccCcceEEEeCCcccccChh-HHHHHHHH-HH--hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE
Confidence 99999 99999 99999999 55555533 32 2689999999987 443 4799 99999 99999
Q ss_pred EecChhHHhh
Q 001055 367 EEGTFEDLSN 376 (1171)
Q Consensus 367 ~~g~~~~l~~ 376 (1171)
.|+.+++.+
T Consensus 330 -~g~~~~~~~ 338 (460)
T 2npi_A 330 -AVDDVYKRS 338 (460)
T ss_dssp -CCCHHHHHH
T ss_pred -ECCHHHHhh
Confidence 999887743
No 117
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.91 E-value=1.8e-24 Score=256.88 Aligned_cols=79 Identities=18% Similarity=0.239 Sum_probs=73.9
Q ss_pred cChHHHHHHHHHHHhccCC--CEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEE----eC
Q 001055 289 ISGGQKQRVSMARAVYSNS--DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV----HE 362 (1171)
Q Consensus 289 LSGGqrqRv~LAraL~~~~--~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l----~~ 362 (1171)
|||||||||+|||+|+.+| ++|||||||+|||+.+.+++.+.+.+.. +|+|+|+|||+++++..||++++| ++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~~~~~~d~i~~l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQIAARAHHHYKVEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHHTTCSEEEEEEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHHHHhhcCeEEEEEEeccC
Confidence 7999999999999999999 9999999999999999999999877665 689999999999999889999999 99
Q ss_pred CEEEEe
Q 001055 363 GMVKEE 368 (1171)
Q Consensus 363 G~i~~~ 368 (1171)
|+++..
T Consensus 375 G~~~~~ 380 (415)
T 4aby_A 375 GRTVSH 380 (415)
T ss_dssp TEEEEE
T ss_pred CceEEE
Confidence 988764
No 118
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.91 E-value=8.3e-28 Score=256.80 Aligned_cols=156 Identities=14% Similarity=0.140 Sum_probs=100.9
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhh
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN 881 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~n 881 (1171)
.+|+|+ ++||++||+||||||||||+++|+|+ +|++|+|. +.++.. +....++.|||+||++ ++|
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~en 78 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NEK 78 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC------------
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HHH
Confidence 589996 89999999999999999999999999 99999994 333321 2234577899999997 555
Q ss_pred c-cCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHH
Q 001055 882 L-DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 960 (1171)
Q Consensus 882 l-~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~ 960 (1171)
+ .+.... ...+........+.++++ . .| |||||++|||||+.+|++|||||||++ +..
T Consensus 79 l~~~~~~~-~~~~~~~~~~~~~~~~l~-----------~---gl--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~ 137 (208)
T 3b85_A 79 IDPYLRPL-HDALRDMVEPEVIPKLME-----------A---GI--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPA 137 (208)
T ss_dssp -CTTTHHH-HHHHTTTSCTTHHHHHHH-----------T---TS--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHH
T ss_pred HHHHHHHH-HHHHHHhccHHHHHHHHH-----------h---CC--chHHHHHHHHHHhcCCCEEEEeCCccc----cHH
Confidence 5 221000 000000000011222222 1 12 999999999999999999999999999 888
Q ss_pred HHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCc
Q 001055 961 LIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSG 997 (1171)
Q Consensus 961 ~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G 997 (1171)
.+++.|+++..++||| ||||++.++. +...++|
T Consensus 138 ~l~~~l~~l~~g~tii-vtHd~~~~~~---~~~~~~G 170 (208)
T 3b85_A 138 QMKMFLTRLGFGSKMV-VTGDITQVDL---PGGQKSG 170 (208)
T ss_dssp HHHHHHTTBCTTCEEE-EEEC---------------C
T ss_pred HHHHHHHHhcCCCEEE-EECCHHHHhC---cCCCCCc
Confidence 9999998874478999 9999987653 3334455
No 119
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.91 E-value=1.1e-24 Score=249.54 Aligned_cols=202 Identities=16% Similarity=0.213 Sum_probs=138.9
Q ss_pred eeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC----------------------------------------------
Q 001055 805 HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV---------------------------------------------- 838 (1171)
Q Consensus 805 ~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~---------------------------------------------- 838 (1171)
+++++++.+| +++|+||||||||||+.+|..++
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 3578899999 99999999999999999998443
Q ss_pred ----CCCCceEEECCEecCCCChHHHhhheEEEcCCcccc-cccHHhhccCCCCCC----H------------HHHHHHH
Q 001055 839 ----ELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF-SGTVRFNLDPFSEHS----D------------ADLWEAL 897 (1171)
Q Consensus 839 ----~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~tv~~nl~~~~~~~----~------------~~i~~~l 897 (1171)
.+.+|.+++||.+++..+.......+++.||+..++ .+++.+++...+... + +++.+.+
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 334578999999875444555566788889887665 667877764321100 0 1111111
Q ss_pred HHh------------cH-HHHHHHccCCcchh------hhcCCCCCChhHHHHHHHHHHhc----cCCCEEEEecCCcCC
Q 001055 898 ERA------------HL-KDAIRRNSLGLDAQ------VSEAGENFSVGQRQLLSLSRALL----RRSKILVLDEATAAV 954 (1171)
Q Consensus 898 ~~~------------~~-~~~i~~lp~gl~~~------~~~~~~~LSgGqkqrl~lArall----~~p~iLlLDEpTs~L 954 (1171)
... .+ ....+.++.|++.. .+.....||||||||++|||||+ ++|++|||||||++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 110 00 00011233344332 12334689999999999999996 789999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEE--EEEeCcEEE-EecChhH
Q 001055 955 DVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRI--LLLDSGRVL-EYDTPEE 1007 (1171)
Q Consensus 955 D~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i--~vl~~G~i~-~~g~~~e 1007 (1171)
|+.+.+.+.+.|++...++|+|+|||+.+.+..||++ ++|.+|+.. ...+.++
T Consensus 255 D~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 255 DDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp CHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEECCC--
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEEEEEEEcch
Confidence 9999999999999986678999999998777779987 788887653 3344444
No 120
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.90 E-value=2.9e-23 Score=241.15 Aligned_cols=83 Identities=24% Similarity=0.336 Sum_probs=76.0
Q ss_pred cCCCCCChhHHHHHHHHHHhc------cCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhhcCEE
Q 001055 919 EAGENFSVGQRQLLSLSRALL------RRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRI 991 (1171)
Q Consensus 919 ~~~~~LSgGqkqrl~lArall------~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i 991 (1171)
....+|||||||||+|||||+ .+|++|||||||++||+.+...+.+.|+++. .++|||+|||+++.+..||+|
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~ 354 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRK 354 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCE
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence 455679999999999999999 7999999999999999999999999999875 479999999999997779999
Q ss_pred EEEeCcEEEE
Q 001055 992 LLLDSGRVLE 1001 (1171)
Q Consensus 992 ~vl~~G~i~~ 1001 (1171)
++|++|++++
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999975
No 121
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.89 E-value=1.6e-23 Score=243.41 Aligned_cols=84 Identities=24% Similarity=0.352 Sum_probs=76.8
Q ss_pred CCCCccChHHHHHHHHHHHhc------cCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEE
Q 001055 284 ERGVNISGGQKQRVSMARAVY------SNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRI 357 (1171)
Q Consensus 284 ~~g~~LSGGqrqRv~LAraL~------~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i 357 (1171)
....+|||||||||+|||||+ .+|++|||||||++||+.+.+++++.+.+....|+|+|+||||+++...||++
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~ 354 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRK 354 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCE
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence 456789999999999999999 79999999999999999999999998877766799999999999998789999
Q ss_pred EEEeCCEEEE
Q 001055 358 ILVHEGMVKE 367 (1171)
Q Consensus 358 ~~l~~G~i~~ 367 (1171)
++|++|++++
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999874
No 122
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.89 E-value=7.1e-25 Score=227.51 Aligned_cols=150 Identities=17% Similarity=0.161 Sum_probs=105.2
Q ss_pred eeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCC--CCcccHHHHHhcCCCCCHHHHHH
Q 001055 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSW--IFNATVRDNILFGSAFEPARYEK 260 (1171)
Q Consensus 183 ~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~--l~~~Tv~eni~~g~~~~~~~~~~ 260 (1171)
||||++++||+++|+||||||||||++++.+.....++. ...|+++|++. .+.+++.+++.. ....
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d-----~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~ 68 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSD-----FCRGLMSDDENDQTVTGAAFDVLHY-------IVSK 68 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHH-----HHHHHHCSSTTCGGGHHHHHHHHHH-------HHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccH-----HHHHHhcCcccchhhHHHHHHHHHH-------HHHH
Confidence 689999999999999999999999999866432211100 01256677653 234444444321 0000
Q ss_pred HHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHH----------------HH
Q 001055 261 AIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH----------------VG 324 (1171)
Q Consensus 261 ~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~----------------~~ 324 (1171)
.. ..+....++ .....|||||||++||||+..+|++++|||||++||+. ..
T Consensus 69 ~~------------~~g~~~~~~-~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~ 135 (171)
T 4gp7_A 69 RL------------QLGKLTVVD-ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHT 135 (171)
T ss_dssp HH------------HTTCCEEEE-SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHH
T ss_pred HH------------hCCCeEEEE-CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHH
Confidence 00 112222222 22456999999999999999999999999999999999 55
Q ss_pred HHHHHHHHhhccCCCEEEEEcCCcchhhhcCEE
Q 001055 325 RQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRI 357 (1171)
Q Consensus 325 ~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i 357 (1171)
+.+.+.+.....+|.|+|+||||++++..++++
T Consensus 136 ~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 136 QQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp HHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred HHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 777776555544589999999999999887665
No 123
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.89 E-value=2e-24 Score=224.16 Aligned_cols=149 Identities=17% Similarity=0.208 Sum_probs=106.9
Q ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcc--cccccHHhhcc
Q 001055 806 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPV--LFSGTVRFNLD 883 (1171)
Q Consensus 806 ~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~--lf~~tv~~nl~ 883 (1171)
||||++++||+++|+||||||||||++++.+ |...+ +.+.+| |+++|++. .+.+++.+++
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~--------~~d~~~---g~~~~~~~~~~~~~~~~~~~- 62 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVI--------SSDFCR---GLMSDDENDQTVTGAAFDVL- 62 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEE--------EHHHHH---HHHCSSTTCGGGHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEE--------ccHHHH---HHhcCcccchhhHHHHHHHH-
Confidence 6899999999999999999999999999653 22222 122333 67777752 1122222111
Q ss_pred CCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHH------
Q 001055 884 PFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVR------ 957 (1171)
Q Consensus 884 ~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~------ 957 (1171)
.. .....+..|+....+.. ...|||||||++||||+..+|++|+|||||++||+.
T Consensus 63 --------------~~----~~~~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~ 123 (171)
T 4gp7_A 63 --------------HY----IVSKRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTD 123 (171)
T ss_dssp --------------HH----HHHHHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSS
T ss_pred --------------HH----HHHHHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccC
Confidence 10 00112234555544443 347999999999999999999999999999999999
Q ss_pred ----------HHHHHHHHHHHHc-CCcEEEEEecChhhhhhcCEE
Q 001055 958 ----------TDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRI 991 (1171)
Q Consensus 958 ----------t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i 991 (1171)
..+.+++.|+++. +|.|+|+|||+++++..++++
T Consensus 124 ~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 124 RQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp CCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred CCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 5577888876553 488999999999999887765
No 124
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.88 E-value=3.5e-24 Score=223.39 Aligned_cols=148 Identities=13% Similarity=0.164 Sum_probs=109.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCCCCCHHHHHH
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWE 895 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~ 895 (1171)
+++|+||||||||||+++|+|++. |.++|.+.........++++||++|++ +..+|+.. ..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~~--~~------- 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIFS--SK------- 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEEE--ET-------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHHH--hh-------
Confidence 689999999999999999999985 556776653332124577899999986 33344310 00
Q ss_pred HHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH-----hccCCCEEEEec--CCcCCCHHHHHHHHHHHHH
Q 001055 896 ALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA-----LLRRSKILVLDE--ATAAVDVRTDALIQKTIRE 968 (1171)
Q Consensus 896 ~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra-----ll~~p~iLlLDE--pTs~LD~~t~~~i~~~l~~ 968 (1171)
....+..+++.+.+||||||||++|||| ++.+|++||||| ||+++|+...+.+.+.+++
T Consensus 63 --------------~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~ 128 (178)
T 1ye8_A 63 --------------FFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD 128 (178)
T ss_dssp --------------TCCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred --------------cCCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc
Confidence 0000123455567899999999999996 999999999999 9999999999999999976
Q ss_pred HcCCcEEEEEec---Chhhhhh-cCEEEEEeCcEEEEe
Q 001055 969 EFKSCTMLIIAH---RLNTIID-CDRILLLDSGRVLEY 1002 (1171)
Q Consensus 969 ~~~~~tvi~vtH---~~~~~~~-~d~i~vl~~G~i~~~ 1002 (1171)
.+.|+|+++| +++++.. ||| .+|+|++.
T Consensus 129 --~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~~ 160 (178)
T 1ye8_A 129 --PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIEL 160 (178)
T ss_dssp --TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEEC
T ss_pred --CCCeEEEEEccCCCchHHHHHHhc----CCcEEEEe
Confidence 5677888885 8888877 888 56777663
No 125
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.88 E-value=5e-25 Score=235.23 Aligned_cols=146 Identities=17% Similarity=0.145 Sum_probs=94.0
Q ss_pred CCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------ecCcEEEEecCCCCCcccHHHHH-
Q 001055 178 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------IRGTVAYVPQVSWIFNATVRDNI- 247 (1171)
Q Consensus 178 ~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------~~~~i~~v~Q~~~l~~~Tv~eni- 247 (1171)
+++|+|+ ++|++++|+||||||||||+++|+|+ +|++|.+.. .+..|||+||++ +||+
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~-------~enl~ 80 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL-------NEKID 80 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC-------------C
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH-------HHHHH
Confidence 4688985 89999999999999999999999999 999887642 234589999987 5666
Q ss_pred hcCCCCCHHHHHHHHHHcC---chHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHH
Q 001055 248 LFGSAFEPARYEKAIDVTS---LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 324 (1171)
Q Consensus 248 ~~g~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~ 324 (1171)
.++.+ .+........ +.+.++ . .| ||||||+|||||+.+|++|||||||++ ++
T Consensus 81 ~~~~~----~~~~~~~~~~~~~~~~~l~-----------~---gl--Gq~qrv~lAraL~~~p~lllLDEPts~----~~ 136 (208)
T 3b85_A 81 PYLRP----LHDALRDMVEPEVIPKLME-----------A---GI--VEVAPLAYMRGRTLNDAFVILDEAQNT----TP 136 (208)
T ss_dssp TTTHH----HHHHHTTTSCTTHHHHHHH-----------T---TS--EEEEEGGGGTTCCBCSEEEEECSGGGC----CH
T ss_pred HHHHH----HHHHHHHhccHHHHHHHHH-----------h---CC--chHHHHHHHHHHhcCCCEEEEeCCccc----cH
Confidence 33210 0000000000 011111 1 12 999999999999999999999999999 77
Q ss_pred HHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCE
Q 001055 325 RQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGM 364 (1171)
Q Consensus 325 ~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~ 364 (1171)
+.+++.+.+. .+|+|+| ||||+++++. +...++|.
T Consensus 137 ~~l~~~l~~l-~~g~tii-vtHd~~~~~~---~~~~~~G~ 171 (208)
T 3b85_A 137 AQMKMFLTRL-GFGSKMV-VTGDITQVDL---PGGQKSGL 171 (208)
T ss_dssp HHHHHHHTTB-CTTCEEE-EEEC---------------CC
T ss_pred HHHHHHHHHh-cCCCEEE-EECCHHHHhC---cCCCCCcH
Confidence 7888866655 5688999 9999887653 33345553
No 126
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.85 E-value=1.3e-21 Score=224.08 Aligned_cols=80 Identities=18% Similarity=0.214 Sum_probs=70.2
Q ss_pred CCCccChHHHHHHHHHHHhc----cCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEE--E
Q 001055 285 RGVNISGGQKQRVSMARAVY----SNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRI--I 358 (1171)
Q Consensus 285 ~g~~LSGGqrqRv~LAraL~----~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i--~ 358 (1171)
....||||||||++|||||+ .+|++|||||||++||+..++.+++.+.+. .++.|+|+|||+.+.+..||++ +
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~-~~~~~vi~~tH~~~~~~~~d~~~~v 294 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKEN-SKHTQFIVITHNKIVMEAADLLHGV 294 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHH-TTTSEEEEECCCTTGGGGCSEEEEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEECCHHHHhhCceEEEE
Confidence 35689999999999999997 689999999999999999999999877665 3578999999998877889987 7
Q ss_pred EEeCCEE
Q 001055 359 LVHEGMV 365 (1171)
Q Consensus 359 ~l~~G~i 365 (1171)
+|.+|..
T Consensus 295 ~~~~g~s 301 (322)
T 1e69_A 295 TMVNGVS 301 (322)
T ss_dssp EESSSCE
T ss_pred EEeCCEE
Confidence 8888854
No 127
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.85 E-value=5.3e-24 Score=248.60 Aligned_cols=167 Identities=16% Similarity=0.139 Sum_probs=129.9
Q ss_pred CcceeeeEEEcCCC--------------------EEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHh
Q 001055 802 PVLHGLSFTIPPSD--------------------KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLR 861 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge--------------------~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r 861 (1171)
.+|++|||+|++|+ ++||+||||||||||+++|+|+++|++|+|.++|.++. |
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e
Confidence 58999999999999 99999999999999999999999999999999997653 1
Q ss_pred hheEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChh--HHHHHHHHHHhc
Q 001055 862 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVG--QRQLLSLSRALL 939 (1171)
Q Consensus 862 ~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgG--qkqrl~lArall 939 (1171)
.++++|++.....|+.+|+.+... ...+.+.++..++.+ . ..... |||| ||||++|||||.
T Consensus 110 --~~~v~q~~~~~~ltv~D~~g~~~~--~~~~~~~L~~~~L~~-----------~-~~~~~-lS~G~~~kqrv~la~aL~ 172 (413)
T 1tq4_A 110 --ERHPYKHPNIPNVVFWDLPGIGST--NFPPDTYLEKMKFYE-----------Y-DFFII-ISATRFKKNDIDIAKAIS 172 (413)
T ss_dssp --CCEEEECSSCTTEEEEECCCGGGS--SCCHHHHHHHTTGGG-----------C-SEEEE-EESSCCCHHHHHHHHHHH
T ss_pred --eEEeccccccCCeeehHhhcccch--HHHHHHHHHHcCCCc-----------c-CCeEE-eCCCCccHHHHHHHHHHH
Confidence 278999975445689888764321 123444444443321 1 11122 9999 999999999999
Q ss_pred c----------CCCEEEEecCCcCCCHHHHHHHHHHHHHHc----------CCcEEEEEecChhh--hhh-cCEEE
Q 001055 940 R----------RSKILVLDEATAAVDVRTDALIQKTIREEF----------KSCTMLIIAHRLNT--IID-CDRIL 992 (1171)
Q Consensus 940 ~----------~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~----------~~~tvi~vtH~~~~--~~~-~d~i~ 992 (1171)
+ +|++|+|||||++||+.++..+++.|++.. ...++++.||.++. ++. ||+|.
T Consensus 173 ~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 173 MMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred hcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 9 999999999999999999999998888762 13678889999886 665 77763
No 128
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.85 E-value=9.7e-24 Score=241.49 Aligned_cols=140 Identities=14% Similarity=0.128 Sum_probs=113.2
Q ss_pred EEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEc
Q 001055 789 FEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIP 868 (1171)
Q Consensus 789 ~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 868 (1171)
+++++| | .++++++||.+++|+.++|+||||||||||+++|+|+++|++|.|.++|.+. +.....++.+++++
T Consensus 151 ~~~v~f-y----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e--~~~~~~~~~i~~~~ 223 (330)
T 2pt7_A 151 YNLLDN-K----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE--IVFKHHKNYTQLFF 223 (330)
T ss_dssp TTTSTT-H----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC--CCCSSCSSEEEEEC
T ss_pred cCchhh-H----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec--cccccchhEEEEEe
Confidence 556666 5 1489999999999999999999999999999999999999999999998642 22111233343332
Q ss_pred CCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 001055 869 QSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLD 948 (1171)
Q Consensus 869 Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLD 948 (1171)
| |||+||++|||||..+|++||||
T Consensus 224 -------------------------------------------g-------------gg~~~r~~la~aL~~~p~ilild 247 (330)
T 2pt7_A 224 -------------------------------------------G-------------GNITSADCLKSCLRMRPDRIILG 247 (330)
T ss_dssp -------------------------------------------B-------------TTBCHHHHHHHHTTSCCSEEEEC
T ss_pred -------------------------------------------C-------------CChhHHHHHHHHhhhCCCEEEEc
Confidence 0 89999999999999999999999
Q ss_pred cCCcCCCHHHHHHHHHHHHHHcCCc-EEEEEecChhhhhhcCEEEEEeCcE
Q 001055 949 EATAAVDVRTDALIQKTIREEFKSC-TMLIIAHRLNTIIDCDRILLLDSGR 998 (1171)
Q Consensus 949 EpTs~LD~~t~~~i~~~l~~~~~~~-tvi~vtH~~~~~~~~d~i~vl~~G~ 998 (1171)
|||+. .+++.|+.+..++ |+|+++|+.+....|||+++|.+|+
T Consensus 248 E~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 248 ELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp CCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred CCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCC
Confidence 99982 3456666665654 7999999999777799999998875
No 129
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.85 E-value=1.7e-24 Score=233.75 Aligned_cols=169 Identities=11% Similarity=0.031 Sum_probs=117.2
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCCh-HHHhhheEEEcCCcccccc-c-H
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL-MDLRKILGIIPQSPVLFSG-T-V 878 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~-~~~r~~i~~v~Q~~~lf~~-t-v 878 (1171)
..|+||||+|++|+++||+||||||||||+++|+|++ | |+|.+ |.++...++ ...+..++|+||++.+|.. + .
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 4699999999999999999999999999999999999 6 99999 877754432 2346789999999877743 2 1
Q ss_pred Hhhcc---CCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH-----HHHhccCCCEEEE
Q 001055 879 RFNLD---PFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL-----SRALLRRSKILVL 947 (1171)
Q Consensus 879 ~~nl~---~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~l-----Arall~~p~iLlL 947 (1171)
.+++. +... ..+.++.++++... ...++ .+|||||+||++| ||+++.+|++++|
T Consensus 87 ~~~l~~~~~~~~~~g~~~~~i~~~l~~~~------------~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~L 151 (218)
T 1z6g_A 87 EDFLEYDNYANNFYGTLKSEYDKAKEQNK------------ICLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVL 151 (218)
T ss_dssp TCEEEEEEETTEEEEEEHHHHHHHHHTTC------------EEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHH
T ss_pred cchhhhhhcccccCCCcHHHHHHHHhCCC------------cEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHH
Confidence 22221 1111 12334444443211 11111 4699999999999 8999999999999
Q ss_pred ecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeC
Q 001055 948 DEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDS 996 (1171)
Q Consensus 948 DEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~ 996 (1171)
||||+++|.+++..+++.|.+..++.| ++| +..||.|+++++
T Consensus 152 de~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 152 LSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 999999999999999999987766666 677 456888887654
No 130
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.84 E-value=1.3e-23 Score=248.54 Aligned_cols=195 Identities=12% Similarity=0.089 Sum_probs=153.1
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCE---ecCCCC-----
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF---DIAKFG----- 856 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~---~i~~~~----- 856 (1171)
..++++++++.|+.+ ..+|+++ |+|.+||++||+||||||||||+++|+|+++|+.|.|.++|. ++..+.
T Consensus 130 ~~l~~~~v~~~~~tg-~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~ 207 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG-VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILG 207 (438)
T ss_dssp CTTTSCCCCSBCCCS-CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTH
T ss_pred CceEEeccceecCCC-ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcc
Confidence 358899999999633 3699999 999999999999999999999999999999999999999998 554321
Q ss_pred hHHHhhheEEEcCC-cccc-cccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001055 857 LMDLRKILGIIPQS-PVLF-SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 934 (1171)
Q Consensus 857 ~~~~r~~i~~v~Q~-~~lf-~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~l 934 (1171)
...+++.++|++|+ ..++ ..|+.+|+... .+.. ..........+ +....||+|| ||++|
T Consensus 208 ~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~-----ae~~------------~~~~~~v~~~l-d~l~~lS~g~-qrvsl 268 (438)
T 2dpy_A 208 PDGRARSVVIAAPADVSPLLRMQGAAYATRI-----AEDF------------RDRGQHVLLIM-DSLTRYAMAQ-REIAL 268 (438)
T ss_dssp HHHHHTEEEEEECTTSCHHHHHHHHHHHHHH-----HHHH------------HTTTCEEEEEE-ECHHHHHHHH-HHHHH
T ss_pred ccccCceEEEEECCCCCHHHHHHHHHHHHHH-----HHHH------------HhCCCCHHHHH-HhHHHHHHHH-HHHHH
Confidence 34577889999995 3333 44788776431 1110 00000111111 2245699999 99999
Q ss_pred HHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-----Cc-----EEEEEecChhhhhhcCEEEEEeCcEEEEecC
Q 001055 935 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-----SC-----TMLIIAHRLNTIIDCDRILLLDSGRVLEYDT 1004 (1171)
Q Consensus 935 Arall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-----~~-----tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~ 1004 (1171)
| +.+|++ |+|||+.+...+.+.+.+..+ |+ ||+++|||++ ...||++++|.+|+|+..|+
T Consensus 269 A---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~~ 338 (438)
T 2dpy_A 269 A---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSRR 338 (438)
T ss_dssp H---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECHH
T ss_pred H---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeCC
Confidence 9 899998 999999999999999988754 43 9999999999 45599999999999999999
Q ss_pred hhHHhh
Q 001055 1005 PEELLS 1010 (1171)
Q Consensus 1005 ~~el~~ 1010 (1171)
+.++..
T Consensus 339 ~~~~~~ 344 (438)
T 2dpy_A 339 LAEAGH 344 (438)
T ss_dssp HHHTTC
T ss_pred HHHccC
Confidence 998865
No 131
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.83 E-value=8.9e-22 Score=205.13 Aligned_cols=133 Identities=14% Similarity=0.159 Sum_probs=95.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCC-CCccc------eecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHc
Q 001055 193 LVAIVGGTGEGKTSLISAMLGELPPV-SDASA------VIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVT 265 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~~~~-~g~~~------~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~ 265 (1171)
+++|+||||||||||+++|+|++... .|... ..+..+||++|++ ++.+|++ +..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~~~------------- 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-SSK------------- 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-EET-------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-Hhh-------------
Confidence 68999999999999999999997522 11110 1234689999986 2223331 100
Q ss_pred CchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHH-----hccCCCEEEEeC--cCCCCCHHHHHHHHHHHHhhccCC
Q 001055 266 SLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA-----VYSNSDVFIFDD--PLSALDAHVGRQVFDRCIRGELSG 338 (1171)
Q Consensus 266 ~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAra-----L~~~~~vllLDE--pts~LD~~~~~~l~~~l~~~~~~~ 338 (1171)
. .+ ....++..+.+||||||||++|||| |+.+|++++||| ||++||+...+++.+.+.. .+
T Consensus 63 ~-------~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~~ 130 (178)
T 1ye8_A 63 F-------FT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---PN 130 (178)
T ss_dssp T-------CC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---TT
T ss_pred c-------CC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---CC
Confidence 0 00 0124566677999999999999996 999999999999 9999999999999886543 46
Q ss_pred CEEEEEcC---Ccchhhh-cCE
Q 001055 339 KTRVLVTN---QLHFLSQ-VDR 356 (1171)
Q Consensus 339 ~tvi~vtH---~~~~l~~-~d~ 356 (1171)
.|+|++|| +..+++. +||
T Consensus 131 ~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 131 VNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTC
T ss_pred CeEEEEEccCCCchHHHHHHhc
Confidence 77888885 7778775 566
No 132
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.82 E-value=1.6e-22 Score=216.63 Aligned_cols=167 Identities=12% Similarity=0.051 Sum_probs=111.4
Q ss_pred CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccc-cHH
Q 001055 801 PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVR 879 (1171)
Q Consensus 801 ~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~ 879 (1171)
.++++| .+|++||++||+||||||||||+++|+|+++ .|.+++.....-+....++.++|+||++.+|.. |+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 368888 7999999999999999999999999999985 355554222211112245679999999987754 777
Q ss_pred hhccCC----C-----CCCHHHHHHHH----------HHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 880 FNLDPF----S-----EHSDADLWEAL----------ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 880 ~nl~~~----~-----~~~~~~i~~~l----------~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
+|+.++ . .....++.+.+ +..++.++..+ ....|| +|+.
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~lS-----------~l~~ 140 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKT-----------MPEAVT-----------VFLA 140 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHH-----------CTTSEE-----------EEEE
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHh-----------cCCcEE-----------EEEE
Confidence 776321 1 11222333222 22233333332 234566 9999
Q ss_pred CCCEEEEecCCcCC----CHHHHHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEe
Q 001055 941 RSKILVLDEATAAV----DVRTDALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLD 995 (1171)
Q Consensus 941 ~p~iLlLDEpTs~L----D~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~ 995 (1171)
+|++++|||||+++ |+..++.+++.++++. .+.|+|+||||++++.. ||||++|.
T Consensus 141 ~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 141 PPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp CSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 99999999999998 7889999999998875 36899999999999987 99999984
No 133
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.81 E-value=1.3e-22 Score=236.86 Aligned_cols=165 Identities=19% Similarity=0.144 Sum_probs=126.5
Q ss_pred CCceeeeeEEecCCC--------------------EEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCc---EEEEec
Q 001055 178 RPTLLNINLDIPVGS--------------------LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT---VAYVPQ 234 (1171)
Q Consensus 178 ~~~l~~isl~i~~Ge--------------------~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~---i~~v~Q 234 (1171)
+.+|++|||++++|+ +++|+||||||||||+|+|+|+++|++|.+...... .++++|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 358999999999999 999999999999999999999999998876432221 289999
Q ss_pred CCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChH--HHHHHHHHHHhcc-------
Q 001055 235 VSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG--QKQRVSMARAVYS------- 305 (1171)
Q Consensus 235 ~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGG--qrqRv~LAraL~~------- 305 (1171)
++...+.|+.||+.++.. ..+..+.++..++.+. + ..+ .|||| ||||++|||||..
T Consensus 116 ~~~~~~ltv~D~~g~~~~--~~~~~~~L~~~~L~~~-------~-~~~-----~lS~G~~~kqrv~la~aL~~~~~p~~l 180 (413)
T 1tq4_A 116 HPNIPNVVFWDLPGIGST--NFPPDTYLEKMKFYEY-------D-FFI-----IISATRFKKNDIDIAKAISMMKKEFYF 180 (413)
T ss_dssp CSSCTTEEEEECCCGGGS--SCCHHHHHHHTTGGGC-------S-EEE-----EEESSCCCHHHHHHHHHHHHTTCEEEE
T ss_pred ccccCCeeehHhhcccch--HHHHHHHHHHcCCCcc-------C-CeE-----EeCCCCccHHHHHHHHHHHhcCCCeEE
Confidence 976557899999877642 2234455555554321 1 111 29999 9999999999999
Q ss_pred ---CCCEEEEeCcCCCCCHHHHHHHHHHHHhhc-----cC----CCEEEEEcCCcch--hhh-cCEE
Q 001055 306 ---NSDVFIFDDPLSALDAHVGRQVFDRCIRGE-----LS----GKTRVLVTNQLHF--LSQ-VDRI 357 (1171)
Q Consensus 306 ---~~~vllLDEpts~LD~~~~~~l~~~l~~~~-----~~----~~tvi~vtH~~~~--l~~-~d~i 357 (1171)
+||+++|||||++||+..++.+++.+.+.. .. ..++++.||.+.. ++. +|+|
T Consensus 181 V~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 181 VRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp EECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred EEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999999999999999998888766542 12 3567888998776 543 4555
No 134
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.81 E-value=7.7e-22 Score=219.34 Aligned_cols=149 Identities=15% Similarity=0.185 Sum_probs=95.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccc-cHHhhccCCCCCCHHHHH
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLW 894 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~~nl~~~~~~~~~~i~ 894 (1171)
.+||+||||||||||+++|+|+..|++|+|.++|.++.. ...++.+++++|++.++.. ||.+|+.+.......+.+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 489999999999999999999999999999999988743 2346789999999988765 999999765432211112
Q ss_pred HHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcE
Q 001055 895 EALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCT 974 (1171)
Q Consensus 895 ~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~t 974 (1171)
+.+......++...++ ..||||||||+++|||++. +++|||||.+||+... .+.+.|.+ ..+
T Consensus 81 ~~i~~~~~~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~-~~l~~L~~---~~~ 142 (270)
T 3sop_A 81 EPIEKYINEQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDL-EFMKHLSK---VVN 142 (270)
T ss_dssp HHHHHHHHHHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHH-HHHHHHHT---TSE
T ss_pred HHHHHHHHHHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHHH-HHHHHHHh---cCc
Confidence 2222222223322222 3599999999999999886 9999999999999873 33444443 389
Q ss_pred EEEEecChhhh
Q 001055 975 MLIIAHRLNTI 985 (1171)
Q Consensus 975 vi~vtH~~~~~ 985 (1171)
+|+|.|..+.+
T Consensus 143 vI~Vi~K~D~l 153 (270)
T 3sop_A 143 IIPVIAKADTM 153 (270)
T ss_dssp EEEEETTGGGS
T ss_pred EEEEEeccccC
Confidence 99999987765
No 135
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.81 E-value=7.2e-20 Score=210.60 Aligned_cols=81 Identities=17% Similarity=0.151 Sum_probs=75.7
Q ss_pred CCChhHHHHHHHHHHhc---------cCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEE
Q 001055 923 NFSVGQRQLLSLSRALL---------RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILL 993 (1171)
Q Consensus 923 ~LSgGqkqrl~lArall---------~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~v 993 (1171)
.||||||||++||++|+ .+|+||||||||++||+...+.+.+.|.+.. .|+|++|| ++. .||++++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 69999999999999999 8999999999999999999999999998853 89999999 444 8999999
Q ss_pred EeCcEEEEecChhHH
Q 001055 994 LDSGRVLEYDTPEEL 1008 (1171)
Q Consensus 994 l~~G~i~~~g~~~el 1008 (1171)
|++|+|++.|+++++
T Consensus 340 l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQ 354 (359)
T ss_dssp EETTEEEECCCTTTS
T ss_pred EECCEEEecCCHHHH
Confidence 999999999999887
No 136
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.81 E-value=2e-21 Score=219.20 Aligned_cols=174 Identities=16% Similarity=0.140 Sum_probs=124.9
Q ss_pred ceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCCh----HHH--hhheEEEcCCcc-cccc
Q 001055 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL----MDL--RKILGIIPQSPV-LFSG 876 (1171)
Q Consensus 804 l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~----~~~--r~~i~~v~Q~~~-lf~~ 876 (1171)
++++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+..... ..+ |..|+|++|++. ++..
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 456788999999999999999999999999999999999999999998865431 223 457999999987 6644
Q ss_pred -cHHhhccCCC-CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC--EEEEecCCc
Q 001055 877 -TVRFNLDPFS-EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK--ILVLDEATA 952 (1171)
Q Consensus 877 -tv~~nl~~~~-~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~--iLlLDEpTs 952 (1171)
|+++|+.... ...+. ..++. .|+.........+|| |||++||||++.+|+ +|+|| ||+
T Consensus 170 ~~v~e~l~~~~~~~~d~------------~lldt--~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pts 231 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYDV------------VLCDT--SGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNT 231 (302)
T ss_dssp HHHHHHHHHHHHTTCSE------------EEECC--CCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGG
T ss_pred HHHHHHHHHHHHcCCcc------------hHHhc--CCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCC
Confidence 8888875310 00000 00111 122221222233588 999999999999999 99999 999
Q ss_pred CCCHHHHHHHHHHHHHHcCCcEEEEEec---------Chhhhhh-cCEEEEEeCcEE
Q 001055 953 AVDVRTDALIQKTIREEFKSCTMLIIAH---------RLNTIID-CDRILLLDSGRV 999 (1171)
Q Consensus 953 ~LD~~t~~~i~~~l~~~~~~~tvi~vtH---------~~~~~~~-~d~i~vl~~G~i 999 (1171)
|+|+.+.. +.+.+ ..+.|+|++|| .++.+.. .+.|.++..|+.
T Consensus 232 glD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 232 GLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CcCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 99998653 22322 14789999999 3344444 789999999974
No 137
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.79 E-value=5.2e-22 Score=225.04 Aligned_cols=178 Identities=16% Similarity=0.228 Sum_probs=127.2
Q ss_pred CccEEEEeeEEEeCCCCCCcceeeeEE-----------------------EcCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 001055 784 SGSIKFEDVVLRYRPELPPVLHGLSFT-----------------------IPPSDKVGIVGRTGAGKSSMLNTLFRIVEL 840 (1171)
Q Consensus 784 ~g~i~~~~vs~~y~~~~~~~l~~vs~~-----------------------i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p 840 (1171)
.+.|+++||++.|. |+++++++. +++|+++||+||||||||||+++|.|+++|
T Consensus 41 ~~~i~~~~v~~~y~----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 41 GEQIDLLEVEEVYL----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp TCCCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCeEEeeehhhhhh----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 34699999999994 577877775 899999999999999999999999999999
Q ss_pred CCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCC--CCCHHHHHHHHHHhcHHHHHHHccCCcchhhh
Q 001055 841 ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS--EHSDADLWEALERAHLKDAIRRNSLGLDAQVS 918 (1171)
Q Consensus 841 ~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~--~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~ 918 (1171)
.+|. .++++|+|++.++..|+++|+.... ...+. .....+.++++.+..+.. .
T Consensus 117 ~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~-----~d~~~~~~~L~~l~~~~~---~ 171 (312)
T 3aez_A 117 WDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPES-----YNRRALMRFVTSVKSGSD---Y 171 (312)
T ss_dssp STTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGG-----BCHHHHHHHHHHHHTTCS---C
T ss_pred cCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChH-----HHHHHHHHHHHHhCCCcc---c
Confidence 8663 4699999999998789999986532 11110 001123344444443332 1
Q ss_pred cCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhh--cCEEEEEeC
Q 001055 919 EAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID--CDRILLLDS 996 (1171)
Q Consensus 919 ~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~--~d~i~vl~~ 996 (1171)
.....|||||+||+++||+++.+|+|||||||+..+|+.. ..+.+.. + .+|+|+|+.+.... ++|.+.+.+
T Consensus 172 ~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~-D-~~I~V~a~~~~~~~R~i~R~~~~rd 244 (312)
T 3aez_A 172 ACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLF-D-FSLYVDARIEDIEQWYVSRFLAMRT 244 (312)
T ss_dssp EEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGC-S-EEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred CCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhc-C-cEEEEECCHHHHHHHHHHHHHHHHh
Confidence 2234799999999999999999999999999999998621 1122221 2 45677777665432 555554444
Q ss_pred c
Q 001055 997 G 997 (1171)
Q Consensus 997 G 997 (1171)
|
T Consensus 245 ~ 245 (312)
T 3aez_A 245 T 245 (312)
T ss_dssp T
T ss_pred c
Confidence 4
No 138
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.78 E-value=1.8e-20 Score=215.22 Aligned_cols=173 Identities=17% Similarity=0.152 Sum_probs=125.0
Q ss_pred eeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCC----hHHH--hhheEEEcCCcc-ccc-c
Q 001055 805 HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG----LMDL--RKILGIIPQSPV-LFS-G 876 (1171)
Q Consensus 805 ~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~----~~~~--r~~i~~v~Q~~~-lf~-~ 876 (1171)
..+||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+.... ...+ |..|+|++|++. ++. .
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 3578889999999999999999999999999999999999999999986542 1222 457999999987 664 4
Q ss_pred cHHhhccCCCC-CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC--EEEEecCCcC
Q 001055 877 TVRFNLDPFSE-HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK--ILVLDEATAA 953 (1171)
Q Consensus 877 tv~~nl~~~~~-~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~--iLlLDEpTs~ 953 (1171)
|+++|+..... ..+. ..++. .|+.........+|| |||++||||++.+|+ +|+|| ||+|
T Consensus 228 tv~e~l~~~~~~~~d~------------~lldt--~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttg 289 (359)
T 2og2_A 228 VLSKAVKRGKEEGYDV------------VLCDT--SGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 289 (359)
T ss_dssp HHHHHHHHHHHTTCSE------------EEEEC--CCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGG
T ss_pred hHHHHHHHHHhCCCHH------------HHHHh--cCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCC
Confidence 88888753100 0000 00111 122221122223588 999999999999999 99999 9999
Q ss_pred CCHHHHHHHHHHHHHHcCCcEEEEEec---------Chhhhhh-cCEEEEEeCcEE
Q 001055 954 VDVRTDALIQKTIREEFKSCTMLIIAH---------RLNTIID-CDRILLLDSGRV 999 (1171)
Q Consensus 954 LD~~t~~~i~~~l~~~~~~~tvi~vtH---------~~~~~~~-~d~i~vl~~G~i 999 (1171)
+|+.+.. +.+.+ ..+.|+|++|| .++.+.. ++.|..+..|+.
T Consensus 290 lD~~~~~---~~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 290 LNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGHHHH---HHHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCHHHHH---HHHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 9998653 22222 14789999999 3344444 789999999874
No 139
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.78 E-value=1.3e-20 Score=216.26 Aligned_cols=197 Identities=13% Similarity=0.123 Sum_probs=144.6
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCC-------CCh
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK-------FGL 857 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~-------~~~ 857 (1171)
..++.+++++.|+.+ ..+|+++ |+|.+||++||+||||||||||+++|+|+.+|+.|.|.+.|.+..+ ...
T Consensus 44 ~~i~~~~l~~~~~tg-~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 44 DPLLRQVIDQPFILG-VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp CSTTCCCCCSEECCS-CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CCeeecccceecCCC-CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 348899999999733 3699999 9999999999999999999999999999999999999998865211 111
Q ss_pred HHHhhheEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchh-hhcCCCCCChhHHHHHHHHH
Q 001055 858 MDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQ-VSEAGENFSVGQRQLLSLSR 936 (1171)
Q Consensus 858 ~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~-~~~~~~~LSgGqkqrl~lAr 936 (1171)
..+++.+.+++|.+. + ....+..++....+.++... .+.+.. +-+...+||+|| ||+++|
T Consensus 122 ~~~~~~v~~~~~~~~----~-----------~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la- 182 (347)
T 2obl_A 122 STLSKCVLVVTTSDR----P-----------ALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA- 182 (347)
T ss_dssp HHHTTEEEEEECTTS----C-----------HHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH-
T ss_pred hhhhceEEEEECCCC----C-----------HHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH-
Confidence 123333455544321 1 12233333444444444332 122110 012345799999 999999
Q ss_pred HhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc--C-Cc-----EEEEEecChhhhhhcCEEEEEeCcEEEEecChhHH
Q 001055 937 ALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--K-SC-----TMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEEL 1008 (1171)
Q Consensus 937 all~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~--~-~~-----tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el 1008 (1171)
+.+|++ |+|+|+.....+.+.+.+.. . |. ||+++|||++ -.-||+++++.+|+|+..|+++++
T Consensus 183 --l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 183 --SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp --TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred --cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHc
Confidence 688887 99999999999999999875 2 55 8999999999 333999999999999999999887
Q ss_pred hhc
Q 001055 1009 LSN 1011 (1171)
Q Consensus 1009 ~~~ 1011 (1171)
...
T Consensus 254 ~~~ 256 (347)
T 2obl_A 254 NHF 256 (347)
T ss_dssp TCS
T ss_pred CCC
Confidence 643
No 140
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.78 E-value=6.1e-22 Score=224.47 Aligned_cols=138 Identities=13% Similarity=0.117 Sum_probs=108.4
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEE-----------------------ecCCCEEEEEcCCCccHHHHHHHHhcCCCCC
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLD-----------------------IPVGSLVAIVGGTGEGKTSLISAMLGELPPV 218 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~-----------------------i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~ 218 (1171)
.|+++||++.|. ++++++++. +++|+++||+||||||||||+++|+|+++|+
T Consensus 43 ~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~ 117 (312)
T 3aez_A 43 QIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW 117 (312)
T ss_dssp CCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS
T ss_pred eEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc
Confidence 589999999994 577777765 8999999999999999999999999999987
Q ss_pred CCccceecCcEEEEecCCCCCcccHHHHHhcCC----C--CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChH
Q 001055 219 SDASAVIRGTVAYVPQVSWIFNATVRDNILFGS----A--FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 292 (1171)
Q Consensus 219 ~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~----~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGG 292 (1171)
.|. ..+++++|++.+++.|++||+.+.. + .+.+.+.+.++.. . .+.. ......||||
T Consensus 118 ~G~-----~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l------~---~~~~---~~~~~~lS~G 180 (312)
T 3aez_A 118 DHH-----PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSV------K---SGSD---YACAPVYSHL 180 (312)
T ss_dssp TTC-----CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHH------H---TTCS---CEEEEEEETT
T ss_pred CCC-----CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHh------C---CCcc---cCCcccCChh
Confidence 653 4599999999988679999997532 1 1223333333322 1 1111 1123589999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCH
Q 001055 293 QKQRVSMARAVYSNSDVFIFDDPLSALDA 321 (1171)
Q Consensus 293 qrqRv~LAraL~~~~~vllLDEpts~LD~ 321 (1171)
|+||+++||+++.+|+|+|||||+..+|+
T Consensus 181 ~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 181 HYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 99999999999999999999999999986
No 141
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.76 E-value=3.6e-19 Score=229.48 Aligned_cols=172 Identities=13% Similarity=0.145 Sum_probs=122.7
Q ss_pred ccEEEEe-----eEEEeCCCCCCcceeeeEEEcC-------CCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEec
Q 001055 785 GSIKFED-----VVLRYRPELPPVLHGLSFTIPP-------SDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI 852 (1171)
Q Consensus 785 g~i~~~~-----vs~~y~~~~~~~l~~vs~~i~~-------Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i 852 (1171)
+.|+++| |++.|.++ ..+++|++|++++ |++++|+||||||||||++++ |++.+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~-~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------ 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGD-DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------ 814 (1022)
T ss_dssp CCEEEEEECCCC------CC-CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH------------
T ss_pred ceEEEEeccccEEEEEecCC-ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH------------
Confidence 3599999 99999433 3699999999988 999999999999999999999 99864
Q ss_pred CCCChHHHhhheE-EEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHH
Q 001055 853 AKFGLMDLRKILG-IIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQL 931 (1171)
Q Consensus 853 ~~~~~~~~r~~i~-~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqr 931 (1171)
..++| ||||++. ..|+.+++... .++.+.+. ....++|+++++
T Consensus 815 --------~aqiG~~Vpq~~~--~l~v~d~I~~r--------------ig~~d~~~-----------~~~stf~~em~~- 858 (1022)
T 2o8b_B 815 --------MAQMGCYVPAEVC--RLTPIDRVFTR--------------LGASDRIM-----------SGESTFFVELSE- 858 (1022)
T ss_dssp --------HHTTTCCEESSEE--EECCCSBEEEE--------------CC--------------------CHHHHHHHH-
T ss_pred --------HhheeEEeccCcC--CCCHHHHHHHH--------------cCCHHHHh-----------hchhhhHHHHHH-
Confidence 24566 9999974 34677766311 11222111 112357777665
Q ss_pred HHHHHHhccCCCEEEEecCCcCCCHHH-HHHHHHHHHHHc-C-CcEEEEEecChhhhhh-cCEEEEEeCcEEE--EecCh
Q 001055 932 LSLSRALLRRSKILVLDEATAAVDVRT-DALIQKTIREEF-K-SCTMLIIAHRLNTIID-CDRILLLDSGRVL--EYDTP 1005 (1171)
Q Consensus 932 l~lArall~~p~iLlLDEpTs~LD~~t-~~~i~~~l~~~~-~-~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~--~~g~~ 1005 (1171)
+++|++++.+|+++||||||+|+|+.. ...+++.|+.+. . ++|+|++||+++.+.. ||++.++ +|++. +.|++
T Consensus 859 ~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~~ 937 (1022)
T 2o8b_B 859 TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENEC 937 (1022)
T ss_dssp HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC-----
T ss_pred HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecCc
Confidence 999999999999999999999999987 455777777764 3 7999999999999887 9999887 58887 44655
Q ss_pred hH
Q 001055 1006 EE 1007 (1171)
Q Consensus 1006 ~e 1007 (1171)
++
T Consensus 938 ~~ 939 (1022)
T 2o8b_B 938 ED 939 (1022)
T ss_dssp --
T ss_pred cc
Confidence 44
No 142
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.76 E-value=7.5e-18 Score=194.08 Aligned_cols=81 Identities=20% Similarity=0.257 Sum_probs=70.3
Q ss_pred cCCCCCChhHHH------HHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhhcCEE
Q 001055 919 EAGENFSVGQRQ------LLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDRI 991 (1171)
Q Consensus 919 ~~~~~LSgGqkq------rl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~i 991 (1171)
.....||||||| ||++||+|+.+|++|||||||++||+.....+.+.|+++. .++|+|+|||+.+....||+|
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~ 323 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHV 323 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEE
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEE
Confidence 345679999999 6788899999999999999999999999999999998865 367999999997766669999
Q ss_pred EEEe--CcEE
Q 001055 992 LLLD--SGRV 999 (1171)
Q Consensus 992 ~vl~--~G~i 999 (1171)
++|+ +|..
T Consensus 324 ~~l~~~~g~s 333 (339)
T 3qkt_A 324 IRISLENGSS 333 (339)
T ss_dssp EEEEEETTEE
T ss_pred EEEEecCCcc
Confidence 9996 5543
No 143
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.76 E-value=1.1e-20 Score=223.41 Aligned_cols=183 Identities=11% Similarity=0.037 Sum_probs=141.1
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------------
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------------- 224 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------------- 224 (1171)
+.++++++++.|+. +.++|+++ |++.+|++++|+||||||||||+++|+|..+|+.|.+..
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 46889999999963 35699999 999999999999999999999999999999998763321
Q ss_pred ----ecCcEEEEecC-CCC-CcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHH
Q 001055 225 ----IRGTVAYVPQV-SWI-FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVS 298 (1171)
Q Consensus 225 ----~~~~i~~v~Q~-~~l-~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~ 298 (1171)
.++.++|++|+ ..+ ...|+.+|+.+.. ++.. ..+ .+...+=+....||||| |||+
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a-----e~~~---~~~----------~~v~~~ld~l~~lS~g~-qrvs 267 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIA-----EDFR---DRG----------QHVLLIMDSLTRYAMAQ-REIA 267 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH-----HHHH---TTT----------CEEEEEEECHHHHHHHH-HHHH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHH-----HHHH---hCC----------CCHHHHHHhHHHHHHHH-HHHH
Confidence 23458999995 333 4679999997531 1111 000 00001112246899999 9999
Q ss_pred HHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc---C-CC-----EEEEEcCCcchhhhcCEEEEEeCCEEEEec
Q 001055 299 MARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL---S-GK-----TRVLVTNQLHFLSQVDRIILVHEGMVKEEG 369 (1171)
Q Consensus 299 LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~---~-~~-----tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g 369 (1171)
|| +.+|++ |++||+.+...+.+.+.+... + |+ |++++|||++ ...+|++++|.+|+++.+|
T Consensus 268 lA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~ 337 (438)
T 2dpy_A 268 LA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSR 337 (438)
T ss_dssp HH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECH
T ss_pred HH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeC
Confidence 99 888888 999999999999987665544 2 64 9999999999 5668999999999999998
Q ss_pred ChhHHh
Q 001055 370 TFEDLS 375 (1171)
Q Consensus 370 ~~~~l~ 375 (1171)
++.++.
T Consensus 338 ~~~~~~ 343 (438)
T 2dpy_A 338 RLAEAG 343 (438)
T ss_dssp HHHHTT
T ss_pred CHHHcc
Confidence 876653
No 144
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.76 E-value=1e-18 Score=212.62 Aligned_cols=77 Identities=12% Similarity=0.148 Sum_probs=71.8
Q ss_pred CCCC-ChhHHHHHHHHHHhccCC--CEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCc
Q 001055 921 GENF-SVGQRQLLSLSRALLRRS--KILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSG 997 (1171)
Q Consensus 921 ~~~L-SgGqkqrl~lArall~~p--~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G 997 (1171)
...| ||||||||+|||||+.+| ++|||||||+|||+.+...|.+.|+++..++|||+|||+++.+..||++++|++|
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 3456 999999999999999999 9999999999999999999999999887789999999999988889999999665
No 145
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.76 E-value=4.3e-21 Score=207.11 Aligned_cols=155 Identities=19% Similarity=0.205 Sum_probs=101.0
Q ss_pred CceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce------------ecCcEEEEecCCCCCcc-----
Q 001055 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV------------IRGTVAYVPQVSWIFNA----- 241 (1171)
Q Consensus 179 ~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~------------~~~~i~~v~Q~~~l~~~----- 241 (1171)
..|+||||++++|++++|+||||||||||+++|+|++ | |.+.. .+..++|++|++.+|..
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 87 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNE 87 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhcc
Confidence 4699999999999999999999999999999999998 5 44321 12458999999866532
Q ss_pred ------cHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHH-----HHHhccCCCEE
Q 001055 242 ------TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSM-----ARAVYSNSDVF 310 (1171)
Q Consensus 242 ------Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~L-----AraL~~~~~vl 310 (1171)
++.+| .+|. ....+.++++.... ..++ .+||||||||++| ||+|+.+|+++
T Consensus 88 ~~l~~~~~~~~-~~g~--~~~~i~~~l~~~~~------------~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~ 149 (218)
T 1z6g_A 88 DFLEYDNYANN-FYGT--LKSEYDKAKEQNKI------------CLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTD 149 (218)
T ss_dssp CEEEEEEETTE-EEEE--EHHHHHHHHHTTCE------------EEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHH
T ss_pred chhhhhhcccc-cCCC--cHHHHHHHHhCCCc------------EEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHH
Confidence 22222 1221 12334444443221 1111 4799999999999 89999999999
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeC
Q 001055 311 IFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHE 362 (1171)
Q Consensus 311 lLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~ 362 (1171)
+|||||+++|.++...+.+.+.... .++| ++| +..+|.|++.++
T Consensus 150 ~Lde~~~~~d~~~~~~i~~~l~~~~-~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 150 VLLSRLLTRNTENQEQIQKRMEQLN-IELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHH-HHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHH-HHHH---hhc----ccCCCEEEECCC
Confidence 9999999999988888877665432 2334 566 456788877654
No 146
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.75 E-value=3.6e-18 Score=196.73 Aligned_cols=77 Identities=21% Similarity=0.284 Sum_probs=68.6
Q ss_pred CCCccChHHHH------HHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEE
Q 001055 285 RGVNISGGQKQ------RVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 358 (1171)
Q Consensus 285 ~g~~LSGGqrq------Rv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~ 358 (1171)
....||||||| |+++||+|+.+|++|||||||+|||+..+..+++.+......++|+|+||||.++...||+++
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~ 324 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVI 324 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEE
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEE
Confidence 35689999999 678889999999999999999999999999999977665556889999999988777899999
Q ss_pred EEe
Q 001055 359 LVH 361 (1171)
Q Consensus 359 ~l~ 361 (1171)
+|+
T Consensus 325 ~l~ 327 (339)
T 3qkt_A 325 RIS 327 (339)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 147
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.75 E-value=2.7e-20 Score=227.07 Aligned_cols=167 Identities=14% Similarity=0.155 Sum_probs=120.8
Q ss_pred CCcceeeeE-EEcCCCEEEEECCCCCcHHHHHHH--HhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCccccccc
Q 001055 801 PPVLHGLSF-TIPPSDKVGIVGRTGAGKSSMLNT--LFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGT 877 (1171)
Q Consensus 801 ~~~l~~vs~-~i~~Ge~v~ivG~nGsGKSTLl~~--l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~t 877 (1171)
.++|++++| .|++|++++|+||||||||||+++ +.|+++|++|.|+++|.+. .......++.+|+++|++... ++
T Consensus 25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~~~-~~ 102 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLVDE-GK 102 (525)
T ss_dssp CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHHHT-TS
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhhcc-Cc
Confidence 379999999 999999999999999999999999 6899999999999999873 222334566799999997531 11
Q ss_pred HHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCc-----
Q 001055 878 VRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA----- 952 (1171)
Q Consensus 878 v~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs----- 952 (1171)
+.. +..... .+..++++..++.+...+.+ ..|||| +|++++|||||+
T Consensus 103 l~~-~~~~~~---~~~~~~l~~~~l~~~~~~~~-----------~~LS~g-------------~~~~lilDe~t~~~~~~ 154 (525)
T 1tf7_A 103 LFI-LDASPD---PEGQEVVGGFDLSALIERIN-----------YAIQKY-------------RARRVSIDSVTSVFQQY 154 (525)
T ss_dssp EEE-EECCCC---SSCCSCCSSHHHHHHHHHHH-----------HHHHHH-------------TCSEEEEECSTTTSTTT
T ss_pred EEE-EecCcc---cchhhhhcccCHHHHHHHHH-----------HHHHHc-------------CCCEEEECCHHHHHHhc
Confidence 110 011100 00011122233333333322 246776 478999999998
Q ss_pred CCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhh---------hh-cCEEEEEeCc
Q 001055 953 AVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTI---------ID-CDRILLLDSG 997 (1171)
Q Consensus 953 ~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~---------~~-~d~i~vl~~G 997 (1171)
++|+...+.+.+.++.+. .++|+|+|||+++.+ .. ||+|++|++|
T Consensus 155 ~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 155 DASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 469999999999998865 489999999999984 45 9999999983
No 148
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.75 E-value=1.1e-20 Score=198.64 Aligned_cols=158 Identities=16% Similarity=0.196 Sum_probs=116.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCCCCCHHHH
Q 001055 814 SDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADL 893 (1171)
Q Consensus 814 Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i 893 (1171)
|++++|+||||||||||+++|+|+++ ++| |.++|.++.++. .+++++||++|+. .++ +.++..+.-..+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~~~~~~--- 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRVGLEPP--- 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEECCCCCC---
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhcccccCC---
Confidence 78999999999999999999999999 999 999998885443 4688899999986 332 334432100000
Q ss_pred HHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH-HHHH---HhccCCCEEEEec--CCcCCCHHHHHHHHHHHH
Q 001055 894 WEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL-SLSR---ALLRRSKILVLDE--ATAAVDVRTDALIQKTIR 967 (1171)
Q Consensus 894 ~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl-~lAr---all~~p~iLlLDE--pTs~LD~~t~~~i~~~l~ 967 (1171)
+...+..+++.+..+|+|||+++ ++++ |++++|+|||||| ||..+|....+.+.+.+.
T Consensus 70 ----------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~ 133 (189)
T 2i3b_A 70 ----------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS 133 (189)
T ss_dssp ----------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH
T ss_pred ----------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh
Confidence 01122355666778999999998 5555 6899999999999 899999999999988887
Q ss_pred HHcCCcEEE----EEecChhhhhhcCEEEEEeCcEEEEe
Q 001055 968 EEFKSCTML----IIAHRLNTIIDCDRILLLDSGRVLEY 1002 (1171)
Q Consensus 968 ~~~~~~tvi----~vtH~~~~~~~~d~i~vl~~G~i~~~ 1002 (1171)
. ..|+| .|+||.+ ..-+|+|..+++|+|++.
T Consensus 134 ~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 134 T---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp C---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEEC
T ss_pred C---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEe
Confidence 4 33444 4459874 333566666688888775
No 149
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.75 E-value=8.1e-21 Score=203.30 Aligned_cols=166 Identities=14% Similarity=0.136 Sum_probs=103.0
Q ss_pred CCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcc--------ceecCcEEEEecCCCCC-cccHHHHHh
Q 001055 178 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS--------AVIRGTVAYVPQVSWIF-NATVRDNIL 248 (1171)
Q Consensus 178 ~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~--------~~~~~~i~~v~Q~~~l~-~~Tv~eni~ 248 (1171)
.++++| .++++|++++|+||||||||||+++|+|+++...+.. ...+..++|++|++.+| ..|+.+|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~ 86 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELL 86 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCce
Confidence 578888 7999999999999999999999999999985221110 01124589999998776 567777764
Q ss_pred cCC---------CCCHHHHHHHHHHc-CchHHHhcCCCCCccccCCCCCccChHHHHHHHHHH---HhccCCCEEEEeCc
Q 001055 249 FGS---------AFEPARYEKAIDVT-SLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR---AVYSNSDVFIFDDP 315 (1171)
Q Consensus 249 ~g~---------~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAr---aL~~~~~vllLDEp 315 (1171)
... ........+.++.. .+. . ...+.|.+.++-..++ +|+.+|++++||||
T Consensus 87 ~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~------~----------~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep 150 (207)
T 1znw_A 87 EWAEIHGGLHRSGTLAQPVRAAAATGVPVL------I----------EVDLAGARAIKKTMPEAVTVFLAPPSWQDLQAR 150 (207)
T ss_dssp EEEEEGGGTEEEEEEHHHHHHHHHHTCCEE------E----------ECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHH
T ss_pred eehhhcCchhhcCCcHHHHHHHHHcCCeEE------E----------EeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHH
Confidence 210 01122222222211 000 0 0012333333333332 89999999999999
Q ss_pred CCCC----CHHHHHHHHHHHHhhc-cCCCEEEEEcCCcchhhh-cCEEEEEe
Q 001055 316 LSAL----DAHVGRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVH 361 (1171)
Q Consensus 316 ts~L----D~~~~~~l~~~l~~~~-~~~~tvi~vtH~~~~l~~-~d~i~~l~ 361 (1171)
|+++ |+..++.+.+.+.+.. ..|.|+|+||||++++.. ||||++|.
T Consensus 151 ~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 151 LIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 9998 7788888888766654 348999999999999865 89999884
No 150
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.73 E-value=1.9e-18 Score=195.43 Aligned_cols=181 Identities=10% Similarity=0.102 Sum_probs=119.2
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc-eEEECCEecCCCChHHHhhheEEEcCCcccccccHHh
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG-RILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRF 880 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G-~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~ 880 (1171)
++|+++++.+++|++++|+||||||||||++.|+|.+.|++| .|.+.+.+ .+...+++++..+.|...+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 589999999999999999999999999999999999999888 77654433 2455666665555544322 1112
Q ss_pred hccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhH-HHHHHHHHHhccCCCEEEEecCCc---C---
Q 001055 881 NLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ-RQLLSLSRALLRRSKILVLDEATA---A--- 953 (1171)
Q Consensus 881 nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGq-kqrl~lArall~~p~iLlLDEpTs---~--- 953 (1171)
++... ..++++..+. +.++++..+.. +......+|.+| +||+. |+++..+|++|||||||+ +
T Consensus 97 ~l~~~-~~~~~~~~~~-----~~~~l~~~~l~----i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~ 165 (296)
T 1cr0_A 97 SLKRE-IIENGKFDQW-----FDELFGNDTFH----LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGE 165 (296)
T ss_dssp HHHHH-HHHHTHHHHH-----HHHHHSSSCEE----EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--------
T ss_pred ccccC-CCCHHHHHHH-----HHHHhccCCEE----EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCC
Confidence 22110 0011111111 11222221221 222334689999 66666 999999999999999999 4
Q ss_pred CCH-HHHHHHHHHHHHHcC--CcEEEEEecCh--h--------------------hhhh-cCEEEEEeCcEE
Q 001055 954 VDV-RTDALIQKTIREEFK--SCTMLIIAHRL--N--------------------TIID-CDRILLLDSGRV 999 (1171)
Q Consensus 954 LD~-~t~~~i~~~l~~~~~--~~tvi~vtH~~--~--------------------~~~~-~d~i~vl~~G~i 999 (1171)
+|. .....+.+.|+++.+ ++|||++||+. + .+.. ||+|++|++|+.
T Consensus 166 ~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 166 SDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 455 566778888877643 79999999995 4 5555 999999998875
No 151
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.73 E-value=4.2e-19 Score=196.29 Aligned_cols=141 Identities=18% Similarity=0.192 Sum_probs=105.6
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CceEEECCEecCCCChHHHhhheE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-RGRILIDGFDIAKFGLMDLRKILG 865 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~-~G~I~i~g~~i~~~~~~~~r~~i~ 865 (1171)
++++++++. ++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.... +..++
T Consensus 6 ~~l~~l~~~------~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~ 73 (261)
T 2eyu_A 6 PEFKKLGLP------DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKS 73 (261)
T ss_dssp CCGGGSSCC------THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSS
T ss_pred CChHHCCCH------HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcce
Confidence 445566542 5999999 9999999999999999999999999999998 999999987653211 11112
Q ss_pred EEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEE
Q 001055 866 IIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKIL 945 (1171)
Q Consensus 866 ~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iL 945 (1171)
+++|. +.|++. ..| |++|||+|..+|++|
T Consensus 74 ~v~q~---------------------------------------~~gl~~------~~l------~~~la~aL~~~p~il 102 (261)
T 2eyu_A 74 IVNQR---------------------------------------EVGEDT------KSF------ADALRAALREDPDVI 102 (261)
T ss_dssp EEEEE---------------------------------------EBTTTB------SCH------HHHHHHHHHHCCSEE
T ss_pred eeeHH---------------------------------------HhCCCH------HHH------HHHHHHHHhhCCCEE
Confidence 22221 112211 122 899999999999999
Q ss_pred EEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeC
Q 001055 946 VLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDS 996 (1171)
Q Consensus 946 lLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~ 996 (1171)
+||||| |+++...+.+ ....+.||++++|+.+....|||+++|..
T Consensus 103 llDEp~---D~~~~~~~l~---~~~~g~~vl~t~H~~~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 103 FVGEMR---DLETVETALR---AAETGHLVFGTLHTNTAIDTIHRIVDIFP 147 (261)
T ss_dssp EESCCC---SHHHHHHHHH---HHHTTCEEEEEECCSSHHHHHHHHHHTSC
T ss_pred EeCCCC---CHHHHHHHHH---HHccCCEEEEEeCcchHHHHHHHHhhhcC
Confidence 999999 9988655444 33368999999999986666999987754
No 152
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.73 E-value=1.9e-19 Score=205.83 Aligned_cols=132 Identities=17% Similarity=0.175 Sum_probs=96.3
Q ss_pred ceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHH
Q 001055 180 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE 259 (1171)
Q Consensus 180 ~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~ 259 (1171)
+++++||.+++|+.++|+||||||||||+++|+|+++|++|.+.. .+. +.+.....++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i-~~~-------~e~~~~~~~~~i------------ 219 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI-EDT-------EEIVFKHHKNYT------------ 219 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEE-ESS-------CCCCCSSCSSEE------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEE-CCe-------eccccccchhEE------------
Confidence 799999999999999999999999999999999999998765432 111 100000000000
Q ss_pred HHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCC
Q 001055 260 KAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK 339 (1171)
Q Consensus 260 ~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~ 339 (1171)
+ .+. + |||+||++|||||..+|++++|||||+ .+ +++.+......+.
T Consensus 220 ------~--------------~~~--g----gg~~~r~~la~aL~~~p~ilildE~~~---~e----~~~~l~~~~~g~~ 266 (330)
T 2pt7_A 220 ------Q--------------LFF--G----GNITSADCLKSCLRMRPDRIILGELRS---SE----AYDFYNVLCSGHK 266 (330)
T ss_dssp ------E--------------EEC--B----TTBCHHHHHHHHTTSCCSEEEECCCCS---TH----HHHHHHHHHTTCC
T ss_pred ------E--------------EEe--C----CChhHHHHHHHHhhhCCCEEEEcCCCh---HH----HHHHHHHHhcCCC
Confidence 0 000 0 899999999999999999999999998 22 2333322222235
Q ss_pred EEEEEcCCcchhhhcCEEEEEeCCE
Q 001055 340 TRVLVTNQLHFLSQVDRIILVHEGM 364 (1171)
Q Consensus 340 tvi~vtH~~~~l~~~d~i~~l~~G~ 364 (1171)
|+|+++|+.+..+.+||+++|.+|.
T Consensus 267 tvi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 267 GTLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred EEEEEEcccHHHHHhhhheehhcCC
Confidence 8999999999777899999998875
No 153
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.73 E-value=3.2e-18 Score=220.79 Aligned_cols=167 Identities=11% Similarity=0.077 Sum_probs=121.0
Q ss_pred CCcEEEEe-----eEEEcCCCCCCCceeeeeEEecC-------CCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecC
Q 001055 160 LPAISIRN-----GYFSWDSKAERPTLLNINLDIPV-------GSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRG 227 (1171)
Q Consensus 160 ~~~i~~~~-----~s~~~~~~~~~~~l~~isl~i~~-------Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~ 227 (1171)
.+.|+++| +++.|+. ++++++|++|++++ |++++|+|||||||||||+++ |++.+. .
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~--------a 816 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM--------A 816 (1022)
T ss_dssp CCCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH--------H
T ss_pred CceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH--------h
Confidence 34699999 9999842 46899999999987 999999999999999999999 987642 2
Q ss_pred cEE-EEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccC
Q 001055 228 TVA-YVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 306 (1171)
Q Consensus 228 ~i~-~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~ 306 (1171)
++| ||||++. ..||.|+|... .++.+.+ ..+..++|+|+++ +++|++++.+
T Consensus 817 qiG~~Vpq~~~--~l~v~d~I~~r--------------ig~~d~~-----------~~~~stf~~em~~-~a~al~la~~ 868 (1022)
T 2o8b_B 817 QMGCYVPAEVC--RLTPIDRVFTR--------------LGASDRI-----------MSGESTFFVELSE-TASILMHATA 868 (1022)
T ss_dssp TTTCCEESSEE--EECCCSBEEEE--------------CC--------------------CHHHHHHHH-HHHHHHHCCT
T ss_pred heeEEeccCcC--CCCHHHHHHHH--------------cCCHHHH-----------hhchhhhHHHHHH-HHHHHHhCCC
Confidence 456 9999873 55677776421 1111111 1122478888875 9999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHH-HHHHHHhhccC-CCEEEEEcCCcchhhh-cCEEEEEeCCEEE
Q 001055 307 SDVFIFDDPLSALDAHVGRQ-VFDRCIRGELS-GKTRVLVTNQLHFLSQ-VDRIILVHEGMVK 366 (1171)
Q Consensus 307 ~~vllLDEpts~LD~~~~~~-l~~~l~~~~~~-~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~ 366 (1171)
|+++|||||++|+|+..... ++..+.....+ |+++|++||+.+.+.. +|++.++ +|++.
T Consensus 869 ~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 869 HSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA 930 (1022)
T ss_dssp TCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred CcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence 99999999999999987544 45544444434 8999999999998875 6888776 58776
No 154
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.72 E-value=1.3e-19 Score=204.44 Aligned_cols=161 Identities=14% Similarity=0.117 Sum_probs=111.8
Q ss_pred eeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee------------------cCcEEEEecCCC-CC-cc
Q 001055 182 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------------RGTVAYVPQVSW-IF-NA 241 (1171)
Q Consensus 182 ~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~------------------~~~i~~v~Q~~~-l~-~~ 241 (1171)
+++||++++|++++|+||||||||||++.|+|.++|++|.+... +..|+|++|++. ++ ..
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 46788999999999999999999999999999999987754321 124899999987 65 67
Q ss_pred cHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCC--EEEEeCcCCCC
Q 001055 242 TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD--VFIFDDPLSAL 319 (1171)
Q Consensus 242 Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~--vllLDEpts~L 319 (1171)
|++||+.++.... .. ...++.. |..........+|| |||++|||||..+|+ +|+|| ||++|
T Consensus 171 ~v~e~l~~~~~~~----------~d-~~lldt~--gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsgl 233 (302)
T 3b9q_A 171 VLSKAVKRGKEEG----------YD-VVLCDTS--GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL 233 (302)
T ss_dssp HHHHHHHHHHHTT----------CS-EEEECCC--CCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGG
T ss_pred HHHHHHHHHHHcC----------Cc-chHHhcC--CCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCc
Confidence 9999997531000 00 0001111 10001112234699 999999999999999 99999 99999
Q ss_pred CHHHHHHHHHHHHhhccCCCEEEEEcCCc---------chhhh-cCEEEEEeCCE
Q 001055 320 DAHVGRQVFDRCIRGELSGKTRVLVTNQL---------HFLSQ-VDRIILVHEGM 364 (1171)
Q Consensus 320 D~~~~~~l~~~l~~~~~~~~tvi~vtH~~---------~~l~~-~d~i~~l~~G~ 364 (1171)
|+..... .+. ...|.|+|++||.- +.+.. .+.|..+..|+
T Consensus 234 D~~~~~~---~~~--~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge 283 (302)
T 3b9q_A 234 NMLPQAR---EFN--EVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGE 283 (302)
T ss_dssp GGHHHHH---HHH--HHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSS
T ss_pred CHHHHHH---HHH--HhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCC
Confidence 9985532 121 12478999999932 22222 37899999886
No 155
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.72 E-value=1.3e-17 Score=191.70 Aligned_cols=81 Identities=19% Similarity=0.136 Sum_probs=73.2
Q ss_pred ccChHHHHHHHHHHHhc---------cCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEE
Q 001055 288 NISGGQKQRVSMARAVY---------SNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 358 (1171)
Q Consensus 288 ~LSGGqrqRv~LAraL~---------~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~ 358 (1171)
.||||||||++||++|+ .+|+||||||||++||+..++.+++.+.... .|+|++||. +. .+|+++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~--~~~~i~ 338 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP--GAALTL 338 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT--TCSEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc--cCCEEE
Confidence 69999999999999999 8999999999999999999999998765543 799999994 44 789999
Q ss_pred EEeCCEEEEecChhHH
Q 001055 359 LVHEGMVKEEGTFEDL 374 (1171)
Q Consensus 359 ~l~~G~i~~~g~~~~l 374 (1171)
+|++|+++..|+++++
T Consensus 339 ~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 339 RAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEETTEEEECCCTTTS
T ss_pred EEECCEEEecCCHHHH
Confidence 9999999999988765
No 156
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.71 E-value=1.5e-19 Score=200.86 Aligned_cols=136 Identities=16% Similarity=0.159 Sum_probs=90.5
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------ecCcEEEEecCCCCC-cccHHHHHhcCCCCCH----HHH
Q 001055 193 LVAIVGGTGEGKTSLISAMLGELPPVSDASAV---------IRGTVAYVPQVSWIF-NATVRDNILFGSAFEP----ARY 258 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~---------~~~~i~~v~Q~~~l~-~~Tv~eni~~g~~~~~----~~~ 258 (1171)
.++|+||||||||||+++|+|...|++|.+.. .+..++|++|++.++ ..||.||+.||..... +.+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~i 83 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEPI 83 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHHH
Confidence 48999999999999999999999998875421 234699999999886 6799999999854321 222
Q ss_pred HHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCC
Q 001055 259 EKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 338 (1171)
Q Consensus 259 ~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~ 338 (1171)
.+.++ ....+.++ .+||||||||+++|||++. +++||||+++||+...+. +..+. ..
T Consensus 84 ~~~~~----~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~~-l~~L~---~~- 140 (270)
T 3sop_A 84 EKYIN----EQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLEF-MKHLS---KV- 140 (270)
T ss_dssp HHHHH----HHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHHH-HHHHH---TT-
T ss_pred HHHHH----HHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHHH-HHHHH---hc-
Confidence 22222 22222222 3799999999999999887 999999999999987433 33332 23
Q ss_pred CEEEEEcCCcchh
Q 001055 339 KTRVLVTNQLHFL 351 (1171)
Q Consensus 339 ~tvi~vtH~~~~l 351 (1171)
.++|+|.|..+.+
T Consensus 141 ~~vI~Vi~K~D~l 153 (270)
T 3sop_A 141 VNIIPVIAKADTM 153 (270)
T ss_dssp SEEEEEETTGGGS
T ss_pred CcEEEEEeccccC
Confidence 7889888876654
No 157
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.71 E-value=6.9e-19 Score=202.05 Aligned_cols=184 Identities=15% Similarity=0.135 Sum_probs=129.2
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceec--------------
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIR-------------- 226 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~-------------- 226 (1171)
+.++++++++.|+. +..+++++ |+|.+||+++|+||||||||||+++|+|..+|+.|.+....
T Consensus 44 ~~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~ 120 (347)
T 2obl_A 44 DPLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLP 120 (347)
T ss_dssp CSTTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSC
T ss_pred CCeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhh
Confidence 45889999999963 35699999 99999999999999999999999999999999865322111
Q ss_pred -----CcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHH
Q 001055 227 -----GTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 301 (1171)
Q Consensus 227 -----~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAr 301 (1171)
..+.+++|.+. ...+++......+.+.+.+.. .+.+.-.+-+...+||+|| |||++|
T Consensus 121 ~~~~~~~v~~~~~~~~---------------~~~~r~~~~~~~~~~ae~~~~-~~~~vl~~ld~~~~lS~g~-r~v~la- 182 (347)
T 2obl_A 121 QSTLSKCVLVVTTSDR---------------PALERMKAAFTATTIAEYFRD-QGKNVLLMMDSVTRYARAA-RDVGLA- 182 (347)
T ss_dssp HHHHTTEEEEEECTTS---------------CHHHHHHHHHHHHHHHHHHHT-TTCEEEEEEETHHHHHHHH-HHHHHH-
T ss_pred hhhhhceEEEEECCCC---------------CHHHHHHHHHHHHHHHHHHHh-ccccHHHHHhhHHHHHHHH-HHHHHH-
Confidence 11233333210 011233333333333332221 1111111113456899999 899999
Q ss_pred HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc--CCC-----EEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHH
Q 001055 302 AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL--SGK-----TRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 374 (1171)
Q Consensus 302 aL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~--~~~-----tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l 374 (1171)
+.+|++ |+||||.....+.+.+.+... .|. |++++|||++ -..||+++.+.+|+|+.+++.+++
T Consensus 183 --l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 183 --SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp --TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred --cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHc
Confidence 588877 999999999999986655543 477 8999999998 455899999999999998877654
No 158
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.70 E-value=2.2e-18 Score=189.37 Aligned_cols=180 Identities=13% Similarity=0.081 Sum_probs=111.0
Q ss_pred EEEEeeEEEeCCCCCCcceeeeE-EEcCCCEEEEECCCCCcHHHHHHHHh--cCCCCCCceEEECCEecCCCChHHHhhh
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSF-TIPPSDKVGIVGRTGAGKSSMLNTLF--RIVELERGRILIDGFDIAKFGLMDLRKI 863 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~-~i~~Ge~v~ivG~nGsGKSTLl~~l~--g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 863 (1171)
+++++++..++ .|+++-- .|++|++++|+||||||||||+++|+ |+.++.+|.+.+++.+... .....++.
T Consensus 7 ~~~~~i~tg~~-----~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 80 (251)
T 2ehv_A 7 QPVRRVKSGIP-----GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMAS 80 (251)
T ss_dssp -CCCEECCSCT-----TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHHT
T ss_pred cccceeecCCH-----hHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHHH
Confidence 45556666653 3444311 78999999999999999999999999 7757778888887654211 12223456
Q ss_pred eEEEcCCcccccc-cHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 864 LGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 864 i~~v~Q~~~lf~~-tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
+++.+|+...+.. ++.++..........+.. ......+-++......+..-..+|
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~l~~~~p 136 (251)
T 2ehv_A 81 FGWDFEKYEKEGKIAIVDGVSSVVGLPSEEKF------------------------VLEDRFNVDNFLRYIYRVVKAINA 136 (251)
T ss_dssp TTCCHHHHHHTTSEEEEC-------------------------------------------CCHHHHHHHHHHHHHHTTC
T ss_pred cCCChHHHhhcCCEEEEEccccccccccccce------------------------eccCcccHHHHHHHHHHHHHhhCC
Confidence 8888887644322 333332111000000000 000112334444444444445799
Q ss_pred CEEEEecCCcCCC-----HHHHHHHHHHHHHHc-CCcEEEEEecChhhh---------hh-c-CEEEEEeC
Q 001055 943 KILVLDEATAAVD-----VRTDALIQKTIREEF-KSCTMLIIAHRLNTI---------ID-C-DRILLLDS 996 (1171)
Q Consensus 943 ~iLlLDEpTs~LD-----~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~---------~~-~-d~i~vl~~ 996 (1171)
++|+|||||+++| +...+.+.+.++.+. .++|||++||+++.+ .. | |+|++|++
T Consensus 137 ~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 137 KRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp SEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred CEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 9999999999997 666666888877764 489999999999987 44 7 99999963
No 159
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.69 E-value=2.3e-17 Score=210.08 Aligned_cols=166 Identities=13% Similarity=0.047 Sum_probs=118.8
Q ss_pred cEEEEeeEEEeCC---CCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHH--------hcCCCCCCceEEECCEecCC
Q 001055 786 SIKFEDVVLRYRP---ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTL--------FRIVELERGRILIDGFDIAK 854 (1171)
Q Consensus 786 ~i~~~~vs~~y~~---~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l--------~g~~~p~~G~I~i~g~~i~~ 854 (1171)
.+++++...-+-. +.+.+++|++|++++|++++|+|||||||||+++++ .|.+-|.++..
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~--------- 701 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE--------- 701 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE---------
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc---------
Confidence 4777776443311 123689999999999999999999999999999999 55554443221
Q ss_pred CChHHHhhheEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001055 855 FGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 934 (1171)
Q Consensus 855 ~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~l 934 (1171)
+++ .+.+. . +.++.+.+ ...+|+|++++..+
T Consensus 702 ---------~~~------------~d~i~--~------------~ig~~d~l--------------~~~lStf~~e~~~~ 732 (934)
T 3thx_A 702 ---------VSI------------VDCIL--A------------RVGAGDSQ--------------LKGVSTFMAEMLET 732 (934)
T ss_dssp ---------EEC------------CSEEE--E------------ECC-----------------------CHHHHHHHHH
T ss_pred ---------chH------------HHHHH--H------------hcCchhhH--------------HHhHhhhHHHHHHH
Confidence 000 00010 0 01111101 12488888888888
Q ss_pred HHHh--ccCCCEEEEecCCcCCCHHHHHHH-HHHHHHHc--CCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHh
Q 001055 935 SRAL--LRRSKILVLDEATAAVDVRTDALI-QKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 935 Aral--l~~p~iLlLDEpTs~LD~~t~~~i-~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
|+++ +.+|+++||||||+|+|+.....+ +..++.+. .++|+|++||+.+....||++..+.+|++...++++++.
T Consensus 733 a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l~ 812 (934)
T 3thx_A 733 ASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLT 812 (934)
T ss_dssp HHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEEE
T ss_pred HHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcEE
Confidence 8888 999999999999999999888777 55555554 379999999998877779999999999999988887764
No 160
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.69 E-value=4.4e-19 Score=194.92 Aligned_cols=164 Identities=12% Similarity=0.171 Sum_probs=102.3
Q ss_pred CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHh
Q 001055 801 PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRF 880 (1171)
Q Consensus 801 ~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~ 880 (1171)
.++|+|+||++++|+++||+||||||||||+++|.|++ |.+.++ ..++.++|++|++.....|+.+
T Consensus 12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~~ 77 (245)
T 2jeo_A 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAEQ 77 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHHH
T ss_pred ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHhH
Confidence 36999999999999999999999999999999999976 555443 3567899999997333448887
Q ss_pred hccCCC---C------CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCC
Q 001055 881 NLDPFS---E------HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT 951 (1171)
Q Consensus 881 nl~~~~---~------~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpT 951 (1171)
|+.... . ...+.+.+ .++.+..+.+ .....||+||+||+++ ++++.+|+++|||||.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~---------~L~~l~~~~~----~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~ 143 (245)
T 2jeo_A 78 KAKALKGQYNFDHPDAFDNDLMHR---------TLKNIVEGKT----VEVPTYDFVTHSRLPE-TTVVYPADVVLFEGIL 143 (245)
T ss_dssp HHHHHTTCCCTTSGGGBCHHHHHH---------HHHHHHTTCC----EEECCEETTTTEECSS-CEEECCCSEEEEECTT
T ss_pred hhhhhccCCCCCCcccccHHHHHH---------HHHHHHCCCC----eecccccccccCccCc-eEEecCCCEEEEeCcc
Confidence 753211 1 11112222 2222222222 2335799999999988 6889999999999998
Q ss_pred cCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhh-hh-cCEEEEEeCcEEEEecChhHHh
Q 001055 952 AAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI-ID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 952 s~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~-~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
...|.. +.+. .+.||+++||+...+ +. ++++ ++|+ ++++++
T Consensus 144 ~~~~~~--------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~ 186 (245)
T 2jeo_A 144 VFYSQE--------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQIL 186 (245)
T ss_dssp TTTSHH--------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHH
T ss_pred ccccHH--------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHH
Confidence 877764 2222 478999999974444 33 4444 5564 555554
No 161
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.69 E-value=2.4e-19 Score=184.98 Aligned_cols=110 Identities=15% Similarity=0.186 Sum_probs=87.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC---CceEEECCEecCCCC---hHHHh-hheE----EEcCCcccccccHHhhcc
Q 001055 815 DKVGIVGRTGAGKSSMLNTLFRIVELE---RGRILIDGFDIAKFG---LMDLR-KILG----IIPQSPVLFSGTVRFNLD 883 (1171)
Q Consensus 815 e~v~ivG~nGsGKSTLl~~l~g~~~p~---~G~I~i~g~~i~~~~---~~~~r-~~i~----~v~Q~~~lf~~tv~~nl~ 883 (1171)
++++|+|+||||||||+++|.|+++|+ .|.|.+||.++.+++ .+.+| +.+| +++|++.+| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999987775 66787 4788 899999877 221
Q ss_pred CCCCCCHHHHHHHHHHhcHHHHHHH-ccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCE
Q 001055 884 PFSEHSDADLWEALERAHLKDAIRR-NSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKI 944 (1171)
Q Consensus 884 ~~~~~~~~~i~~~l~~~~~~~~i~~-lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~i 944 (1171)
. +.+. .+++.+++++ +| |+|+.+++. |||||+|||+||||++++|++
T Consensus 77 ----~-~~~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i 124 (171)
T 2f1r_A 77 ----V-SEEE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHF 124 (171)
T ss_dssp ----C-CHHH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGG
T ss_pred ----C-Chhh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCcc
Confidence 0 1111 5789999999 99 999999985 999999999999999999986
No 162
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.69 E-value=1.2e-16 Score=203.48 Aligned_cols=168 Identities=15% Similarity=0.083 Sum_probs=117.5
Q ss_pred CcEEEEeeEEEcCC--CCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHH--------hcCCCCCCCccceecCcEE
Q 001055 161 PAISIRNGYFSWDS--KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAM--------LGELPPVSDASAVIRGTVA 230 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~--~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l--------~G~~~~~~g~~~~~~~~i~ 230 (1171)
..|.+++...-+-. .+++.+++|++|++++|++++|+||||||||||||++ .|.+-|..+. .++
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~------~~~ 703 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESA------EVS 703 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEE------EEE
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccc------cch
Confidence 35888877554432 1245799999999999999999999999999999999 5544342211 011
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHh--ccCCC
Q 001055 231 YVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV--YSNSD 308 (1171)
Q Consensus 231 ~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL--~~~~~ 308 (1171)
.+ ..++. ..++.+. ....+|+|++++..+|++| +.+|+
T Consensus 704 ~~---d~i~~-----------------------~ig~~d~--------------l~~~lStf~~e~~~~a~il~~a~~~s 743 (934)
T 3thx_A 704 IV---DCILA-----------------------RVGAGDS--------------QLKGVSTFMAEMLETASILRSATKDS 743 (934)
T ss_dssp CC---SEEEE-----------------------ECC-----------------------CHHHHHHHHHHHHHHHCCTTC
T ss_pred HH---HHHHH-----------------------hcCchhh--------------HHHhHhhhHHHHHHHHHHHHhccCCc
Confidence 11 01110 0011000 0136888888888888888 99999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHh-hcc-CCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHH
Q 001055 309 VFIFDDPLSALDAHVGRQVFDRCIR-GEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDL 374 (1171)
Q Consensus 309 vllLDEpts~LD~~~~~~l~~~l~~-~~~-~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l 374 (1171)
++||||||+|+|+.....+...+++ ... .|+|+|++||+.+....+|++..+.+|++...++.+++
T Consensus 744 LlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 744 LIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp EEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcE
Confidence 9999999999999988777443443 333 48999999999888778899999999999887765544
No 163
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.69 E-value=1e-18 Score=200.60 Aligned_cols=161 Identities=14% Similarity=0.125 Sum_probs=113.2
Q ss_pred eeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee------------------cCcEEEEecCCC-CC-cc
Q 001055 182 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------------RGTVAYVPQVSW-IF-NA 241 (1171)
Q Consensus 182 ~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~------------------~~~i~~v~Q~~~-l~-~~ 241 (1171)
+.+||++++|++++|+||||||||||++.|+|.++|++|.+... +..|+|++|++. ++ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 35788999999999999999999999999999999887654221 124899999987 65 67
Q ss_pred cHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCC--EEEEeCcCCCC
Q 001055 242 TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD--VFIFDDPLSAL 319 (1171)
Q Consensus 242 Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~--vllLDEpts~L 319 (1171)
|++||+.++.... .. ...++.. |..........+|| |||++|||||..+|+ +|+|| ||++|
T Consensus 228 tv~e~l~~~~~~~----------~d-~~lldt~--Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttgl 290 (359)
T 2og2_A 228 VLSKAVKRGKEEG----------YD-VVLCDTS--GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL 290 (359)
T ss_dssp HHHHHHHHHHHTT----------CS-EEEEECC--CCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGG
T ss_pred hHHHHHHHHHhCC----------CH-HHHHHhc--CCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCC
Confidence 9999997541000 00 0001111 00001111224689 999999999999999 99999 99999
Q ss_pred CHHHHHHHHHHHHhhccCCCEEEEEcCC---------cchhhh-cCEEEEEeCCE
Q 001055 320 DAHVGRQVFDRCIRGELSGKTRVLVTNQ---------LHFLSQ-VDRIILVHEGM 364 (1171)
Q Consensus 320 D~~~~~~l~~~l~~~~~~~~tvi~vtH~---------~~~l~~-~d~i~~l~~G~ 364 (1171)
|+.....- +. ...|.|+|++||. ++.+.. .+.|..+..|+
T Consensus 291 D~~~~~~~---~~--~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge 340 (359)
T 2og2_A 291 NMLPQARE---FN--EVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGE 340 (359)
T ss_dssp GGHHHHHH---HH--HHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSS
T ss_pred CHHHHHHH---HH--HhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCC
Confidence 99865321 11 1247899999993 222222 37899998886
No 164
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.68 E-value=1.6e-17 Score=208.06 Aligned_cols=157 Identities=17% Similarity=0.158 Sum_probs=117.2
Q ss_pred ccEEEEeeEEEeCC---CCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCceEEECCEecCCCChHHH
Q 001055 785 GSIKFEDVVLRYRP---ELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LERGRILIDGFDIAKFGLMDL 860 (1171)
Q Consensus 785 g~i~~~~vs~~y~~---~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~-p~~G~I~i~g~~i~~~~~~~~ 860 (1171)
+.+++++. +++- ....+++|+||+ |++++|+||||||||||+++|+|+.. |+.|.+.- ..
T Consensus 549 ~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vp-----------a~ 612 (765)
T 1ewq_A 549 DRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVP-----------AE 612 (765)
T ss_dssp SSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBS-----------SS
T ss_pred CcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceee-----------hh
Confidence 45888887 3322 224689999999 99999999999999999999999874 67786521 12
Q ss_pred hhheEEEcCCcccccc-cHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh-
Q 001055 861 RKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL- 938 (1171)
Q Consensus 861 r~~i~~v~Q~~~lf~~-tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral- 938 (1171)
+..+++++| +|.. ++.+|+.. .+|+|+++++.+|+++
T Consensus 613 ~~~i~~v~~---i~~~~~~~d~l~~--------------------------------------g~S~~~~e~~~la~il~ 651 (765)
T 1ewq_A 613 EAHLPLFDG---IYTRIGASDDLAG--------------------------------------GKSTFMVEMEEVALILK 651 (765)
T ss_dssp EEEECCCSE---EEEECCC--------------------------------------------CCSHHHHHHHHHHHHHH
T ss_pred ccceeeHHH---hhccCCHHHHHHh--------------------------------------cccHHHHHHHHHHHHHH
Confidence 346888877 4432 55555421 3789999999999999
Q ss_pred -ccCCCEEEEecC---CcCCCHHHH-HHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEe
Q 001055 939 -LRRSKILVLDEA---TAAVDVRTD-ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEY 1002 (1171)
Q Consensus 939 -l~~p~iLlLDEp---Ts~LD~~t~-~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~ 1002 (1171)
+.+|+++||||| |+++|..+. ..+.+.|.+ .++|+|++||+.+....| .-.+.++++...
T Consensus 652 ~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~--~~~v~n~~~~~~ 716 (765)
T 1ewq_A 652 EATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG--LPRLKNLHVAAR 716 (765)
T ss_dssp HCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC--CTTEEEEEEEEE
T ss_pred hccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh--hhcceEEEEEEE
Confidence 999999999999 999999886 478888877 589999999998887555 223345555444
No 165
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.67 E-value=3.5e-17 Score=205.00 Aligned_cols=147 Identities=13% Similarity=0.099 Sum_probs=108.5
Q ss_pred CcEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCC-CCCCccce-ecCcEEEEecCCCC
Q 001055 161 PAISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-PVSDASAV-IRGTVAYVPQVSWI 238 (1171)
Q Consensus 161 ~~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~-~~~g~~~~-~~~~i~~v~Q~~~l 238 (1171)
..|.+++...-.-...++++++|+||+ |++++|+||||||||||||+++|... +..|.... .+..+++++| +
T Consensus 549 ~~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~---i 622 (765)
T 1ewq_A 549 DRLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDG---I 622 (765)
T ss_dssp SSEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSE---E
T ss_pred CcEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHH---h
Confidence 358888873222110246899999999 99999999999999999999999864 55564332 1234677766 3
Q ss_pred C-cccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHh--ccCCCEEEEeCc
Q 001055 239 F-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV--YSNSDVFIFDDP 315 (1171)
Q Consensus 239 ~-~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL--~~~~~vllLDEp 315 (1171)
| ..++.||+.. .+|+|+++++.+|+++ +.+|+++|||||
T Consensus 623 ~~~~~~~d~l~~--------------------------------------g~S~~~~e~~~la~il~~a~~p~LlLLDEp 664 (765)
T 1ewq_A 623 YTRIGASDDLAG--------------------------------------GKSTFMVEMEEVALILKEATENSLVLLDEV 664 (765)
T ss_dssp EEECCC--------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEEST
T ss_pred hccCCHHHHHHh--------------------------------------cccHHHHHHHHHHHHHHhccCCCEEEEECC
Confidence 3 3455555532 3789999999999999 999999999999
Q ss_pred ---CCCCCHHHHH-HHHHHHHhhccCCCEEEEEcCCcchhhhc
Q 001055 316 ---LSALDAHVGR-QVFDRCIRGELSGKTRVLVTNQLHFLSQV 354 (1171)
Q Consensus 316 ---ts~LD~~~~~-~l~~~l~~~~~~~~tvi~vtH~~~~l~~~ 354 (1171)
|++||+.+.. .+.+.+.+ .|.|+|++||+.+....+
T Consensus 665 grGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 665 GRGTSSLDGVAIATAVAEALHE---RRAYTLFATHYFELTALG 704 (765)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHHHHTCC
T ss_pred CCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHHHHHhh
Confidence 9999998764 57776644 478999999998876544
No 166
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.67 E-value=8.1e-17 Score=191.66 Aligned_cols=73 Identities=22% Similarity=0.299 Sum_probs=67.6
Q ss_pred CCChhHHHHHHHHHHhc----cCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEEEecChhhhhhcCEEEEEe
Q 001055 923 NFSVGQRQLLSLSRALL----RRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNTIIDCDRILLLD 995 (1171)
Q Consensus 923 ~LSgGqkqrl~lArall----~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~vtH~~~~~~~~d~i~vl~ 995 (1171)
.||||||||++||++|+ ++|++|||||||++||+.....+.+.|++... +.++|+|||+...+..||+++++.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 49999999999999999 68999999999999999999999999998753 689999999988877799999996
No 167
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.66 E-value=1.8e-16 Score=159.28 Aligned_cols=81 Identities=20% Similarity=0.274 Sum_probs=70.9
Q ss_pred CCCCccChHHHHHHHHH------HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEE
Q 001055 284 ERGVNISGGQKQRVSMA------RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRI 357 (1171)
Q Consensus 284 ~~g~~LSGGqrqRv~LA------raL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i 357 (1171)
....+||||||||++|| |||+.+|++++|||||++||+.+++++.+.+.+....|+|+|+|||+.+....||++
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~i 132 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHV 132 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEE
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCEE
Confidence 44679999999999876 999999999999999999999999999997776555689999999999766678999
Q ss_pred EEE--eCCE
Q 001055 358 ILV--HEGM 364 (1171)
Q Consensus 358 ~~l--~~G~ 364 (1171)
++| ++|.
T Consensus 133 i~l~~~~g~ 141 (148)
T 1f2t_B 133 IRISLENGS 141 (148)
T ss_dssp EEEEEETTE
T ss_pred EEEEcCCCe
Confidence 999 4564
No 168
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.66 E-value=2e-16 Score=159.03 Aligned_cols=82 Identities=20% Similarity=0.265 Sum_probs=71.6
Q ss_pred hcCCCCCChhHHHHHHHH------HHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-CCcEEEEEecChhhhhhcCE
Q 001055 918 SEAGENFSVGQRQLLSLS------RALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNTIIDCDR 990 (1171)
Q Consensus 918 ~~~~~~LSgGqkqrl~lA------rall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~-~~~tvi~vtH~~~~~~~~d~ 990 (1171)
+....+||||||||++|| |||+.+|++|||||||++||+.+...+.+.|.++. .++|+|+|||+++....||+
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~ 131 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADH 131 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSE
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCE
Confidence 455678999999999876 99999999999999999999999999999999875 47899999999965555999
Q ss_pred EEEE--eCcEE
Q 001055 991 ILLL--DSGRV 999 (1171)
Q Consensus 991 i~vl--~~G~i 999 (1171)
+++| ++|..
T Consensus 132 ii~l~~~~g~s 142 (148)
T 1f2t_B 132 VIRISLENGSS 142 (148)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEcCCCeE
Confidence 9999 45643
No 169
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.66 E-value=3.1e-17 Score=177.74 Aligned_cols=147 Identities=18% Similarity=0.196 Sum_probs=99.5
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-------CCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhc
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-------ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL 882 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-------~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl 882 (1171)
.|++|++++|+||||||||||+++|+|.+.| ..|.|++++.+. .. ++++++++|...++..|+.+|+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6899999999999999999999999996655 445788887542 11 2356677777766666888887
Q ss_pred cCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh-------ccCCCEEEEecCCcCCC
Q 001055 883 DPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL-------LRRSKILVLDEATAAVD 955 (1171)
Q Consensus 883 ~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral-------l~~p~iLlLDEpTs~LD 955 (1171)
.+........ +++.+..++++ ..+|++++|||||+.+|
T Consensus 95 ~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~ 139 (231)
T 4a74_A 95 YVARAFNSNH-----------------------------------QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR 139 (231)
T ss_dssp EEEECCSHHH-----------------------------------HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHH
T ss_pred EEEecCChHH-----------------------------------HHHHHHHHHHHHHHhcccCCceeEEEECChHHHhc
Confidence 6533222211 11122222222 34899999999999999
Q ss_pred HH-------HH-----HHHHHHHHHHc--CCcEEEEEecChhh----hhh-cCEEEEEeCc
Q 001055 956 VR-------TD-----ALIQKTIREEF--KSCTMLIIAHRLNT----IID-CDRILLLDSG 997 (1171)
Q Consensus 956 ~~-------t~-----~~i~~~l~~~~--~~~tvi~vtH~~~~----~~~-~d~i~vl~~G 997 (1171)
+. .. ..+.+.|.+.. .++|||+|||.+.. +.. ||++++|++|
T Consensus 140 ~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 140 SEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred cccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 84 21 24555555543 37999999995554 766 9999999875
No 170
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.65 E-value=1.7e-18 Score=213.82 Aligned_cols=190 Identities=13% Similarity=0.229 Sum_probs=122.2
Q ss_pred cEEEEeeEEEeCCCCCCcceee----------eEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCceEEECCEecCC
Q 001055 786 SIKFEDVVLRYRPELPPVLHGL----------SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-ERGRILIDGFDIAK 854 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~v----------s~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-~~G~I~i~g~~i~~ 854 (1171)
.++++|+++.|+...+++|+.+ +++++. +||+||||||||||+++|+|++.| ++|.|.++|.++..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 4889999999965333455444 366665 999999999999999999999989 79999999998632
Q ss_pred --C-ChHHHhhheEEEcCCcccccc-cHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHH
Q 001055 855 --F-GLMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQ 930 (1171)
Q Consensus 855 --~-~~~~~r~~i~~v~Q~~~lf~~-tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkq 930 (1171)
. ....+|..|+|+||++.+++. ||++|+... ... +.. .+..+| ++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~-----------~~~------~~~-----------~~~~~s---~~ 135 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKA-----------QNA------IAG-----------EGMGIS---HE 135 (608)
T ss_dssp EECSSSSCCEEEESCC---CCCCCHHHHHTTHHHH-----------HHH------HHC-----------SSSCCC---SC
T ss_pred ecCCccccceeEEeeecccccCCCHHHHHHHHHHH-----------HHH------hcC-----------Cccccc---hH
Confidence 1 134578899999999988755 888887421 110 000 011122 23
Q ss_pred HHHHHHHhccCCCEEEEecC------CcCCCHHHHHHHHHHHHHHcC---CcEEEEEecChhhh--------hh-----c
Q 001055 931 LLSLSRALLRRSKILVLDEA------TAAVDVRTDALIQKTIREEFK---SCTMLIIAHRLNTI--------ID-----C 988 (1171)
Q Consensus 931 rl~lArall~~p~iLlLDEp------Ts~LD~~t~~~i~~~l~~~~~---~~tvi~vtH~~~~~--------~~-----~ 988 (1171)
++.++.+....|+++|+||| |++||+...+.+.+.++++.. +.++++++|+++.. .. +
T Consensus 136 ~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~ 215 (608)
T 3szr_A 136 LITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGD 215 (608)
T ss_dssp CEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCC
T ss_pred HHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCC
Confidence 44455555678999999999 999999999999999998642 46789999998743 11 4
Q ss_pred CEEEEEeCcEEEEecChhHHh
Q 001055 989 DRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 989 d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
..|+|+.++.+++.|+.+++.
T Consensus 216 rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 216 RTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp SEEEEEECGGGSSSSSTTCCC
T ss_pred ceEEEecchhhcCcccHHHHH
Confidence 678999999998888876544
No 171
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.64 E-value=2.4e-17 Score=182.26 Aligned_cols=132 Identities=17% Similarity=0.239 Sum_probs=99.3
Q ss_pred CceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCC-CCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHH
Q 001055 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV-SDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPAR 257 (1171)
Q Consensus 179 ~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~-~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~ 257 (1171)
++|+++| +++|++++|+||||||||||+++|+|+++|+ +|.+......+.|++|++.-+ . .
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~--------v-----~--- 76 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSI--------V-----N--- 76 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSE--------E-----E---
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCccee--------e-----e---
Confidence 4899999 9999999999999999999999999999987 776655444455555543110 0 0
Q ss_pred HHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC
Q 001055 258 YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS 337 (1171)
Q Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~ 337 (1171)
. ..+|....+| |++|||+|..+|++++||||| |+++...+.+. ...
T Consensus 77 ---------------q------~~~gl~~~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~----~~~ 122 (261)
T 2eyu_A 77 ---------------Q------REVGEDTKSF------ADALRAALREDPDVIFVGEMR---DLETVETALRA----AET 122 (261)
T ss_dssp ---------------E------EEBTTTBSCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHH----HHT
T ss_pred ---------------H------HHhCCCHHHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHH----Hcc
Confidence 0 0122111233 899999999999999999999 99987655442 235
Q ss_pred CCEEEEEcCCcchhhhcCEEEEEeC
Q 001055 338 GKTRVLVTNQLHFLSQVDRIILVHE 362 (1171)
Q Consensus 338 ~~tvi~vtH~~~~l~~~d~i~~l~~ 362 (1171)
|.++++++|+.+....+||++.|..
T Consensus 123 g~~vl~t~H~~~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 123 GHLVFGTLHTNTAIDTIHRIVDIFP 147 (261)
T ss_dssp TCEEEEEECCSSHHHHHHHHHHTSC
T ss_pred CCEEEEEeCcchHHHHHHHHhhhcC
Confidence 8999999999987667899988754
No 172
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.64 E-value=1.7e-17 Score=191.44 Aligned_cols=167 Identities=18% Similarity=0.116 Sum_probs=114.8
Q ss_pred Ccceee-eEEEcCCCEEEEECCCCCcHHHHHHHHhcCC--CCCC----ce-EEECCEecCCCChHHHhhheEEEcCCccc
Q 001055 802 PVLHGL-SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV--ELER----GR-ILIDGFDIAKFGLMDLRKILGIIPQSPVL 873 (1171)
Q Consensus 802 ~~l~~v-s~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~--~p~~----G~-I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 873 (1171)
+.|+++ ++.|++|++++|+||||||||||++.+++.+ +|++ |+ |++++.+.. .++++++++|.+.+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~ 191 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGL 191 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTC
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCC
Confidence 356665 6899999999999999999999999999998 6776 67 899986641 25678889999888
Q ss_pred ccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc-------cCCCEEE
Q 001055 874 FSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL-------RRSKILV 946 (1171)
Q Consensus 874 f~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall-------~~p~iLl 946 (1171)
+..++.+|+.+..... |++|+|++.++++++ .+|++||
T Consensus 192 ~~~~v~~ni~~~~~~~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 192 DPDEVLKHIYVARAFN-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp CHHHHGGGEEEEECCS-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred CHHHHhhCEEEEecCC-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 7778888886532221 234455555555555 6899999
Q ss_pred EecCCcCCCHHH------------HHHHHHHHHHHc--CCcEEEEEecChhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 947 LDEATAAVDVRT------------DALIQKTIREEF--KSCTMLIIAHRLNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 947 LDEpTs~LD~~t------------~~~i~~~l~~~~--~~~tvi~vtH~~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
+||||+++|+.. ...+...|.++. .++|||+++|....... ++...+...|++++++.+..|.
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL~ 314 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVY 314 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEEE
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEEE
Confidence 999999999863 234445555543 47999999999876543 4456667788887777655553
No 173
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.63 E-value=4.9e-19 Score=205.85 Aligned_cols=175 Identities=17% Similarity=0.113 Sum_probs=137.1
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CceEEECCEecCCCChHHHhhheEEEcC-----Cccccc
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-RGRILIDGFDIAKFGLMDLRKILGIIPQ-----SPVLFS 875 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~-~G~I~i~g~~i~~~~~~~~r~~i~~v~Q-----~~~lf~ 875 (1171)
++|++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.+.|.++. + .++..+++|+| ++..|.
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 4778776 8999999999999999999999999999998 899987776653 2 35678999999 788888
Q ss_pred ccHHhhccCCCCC-------CHHHHHHHHHHhcH-------------HHHHH----------------HccCCcchhhhc
Q 001055 876 GTVRFNLDPFSEH-------SDADLWEALERAHL-------------KDAIR----------------RNSLGLDAQVSE 919 (1171)
Q Consensus 876 ~tv~~nl~~~~~~-------~~~~i~~~l~~~~~-------------~~~i~----------------~lp~gl~~~~~~ 919 (1171)
.+++.||...++. +.+.+..+++.+.. .+.++ .++.++++.+.+
T Consensus 200 ~~l~~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~q 279 (372)
T 2ewv_A 200 DALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQ 279 (372)
T ss_dssp HHHHHHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEE
T ss_pred HHHHHHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEE
Confidence 8999999754322 45556666665432 11122 235567777777
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCE--EEEecCCcCCCHH----H-----HHHHHHHHHHHcCCcEEEEEecChhh
Q 001055 920 AGENFSVGQRQLLSLSRALLRRSKI--LVLDEATAAVDVR----T-----DALIQKTIREEFKSCTMLIIAHRLNT 984 (1171)
Q Consensus 920 ~~~~LSgGqkqrl~lArall~~p~i--LlLDEpTs~LD~~----t-----~~~i~~~l~~~~~~~tvi~vtH~~~~ 984 (1171)
++..+||| ||++++++++.+|+| +|+||+|+.+|.. + +...++++....+|+|.+.++|++..
T Consensus 280 rl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 280 RLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 66678999 899999999999999 9999999999965 2 34577778777789999999999763
No 174
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.63 E-value=7.4e-17 Score=185.69 Aligned_cols=147 Identities=20% Similarity=0.213 Sum_probs=106.5
Q ss_pred EeeEEEeCCCCCCcceeeeE-------EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CceEEECCEecCCCChHHHh
Q 001055 790 EDVVLRYRPELPPVLHGLSF-------TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELE-RGRILIDGFDIAKFGLMDLR 861 (1171)
Q Consensus 790 ~~vs~~y~~~~~~~l~~vs~-------~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~-~G~I~i~g~~i~~~~~~~~r 861 (1171)
.+++++|.+...+.|+++.+ .+.+|++++|+||||||||||+++|+|+++|+ +|.|...+.++. +. .+
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e-~~---~~ 167 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIE-FV---HE 167 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCC-SC---CC
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHH-hh---hh
Confidence 56777775544567777776 77899999999999999999999999999997 566655433332 11 12
Q ss_pred hheEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC
Q 001055 862 KILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR 941 (1171)
Q Consensus 862 ~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~ 941 (1171)
...++++|...... .++-.+ +|||||..+
T Consensus 168 ~~~~~v~q~~~~~~-----------------------------------------------~~~~~~----~La~aL~~~ 196 (356)
T 3jvv_A 168 SKKCLVNQREVHRD-----------------------------------------------TLGFSE----ALRSALRED 196 (356)
T ss_dssp CSSSEEEEEEBTTT-----------------------------------------------BSCHHH----HHHHHTTSC
T ss_pred ccccceeeeeeccc-----------------------------------------------cCCHHH----HHHHHhhhC
Confidence 23444554432110 011111 999999999
Q ss_pred CCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCc
Q 001055 942 SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSG 997 (1171)
Q Consensus 942 p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G 997 (1171)
|++|++|||| |.++.+.+.++. ..|.|||+++|+.+.+..|||+++|..|
T Consensus 197 PdvillDEp~---d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 197 PDIILVGEMR---DLETIRLALTAA---ETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp CSEEEESCCC---SHHHHHHHHHHH---HTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred cCEEecCCCC---CHHHHHHHHHHH---hcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 9999999999 777766555543 2589999999999999779999988654
No 175
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.62 E-value=2.4e-17 Score=176.08 Aligned_cols=169 Identities=18% Similarity=0.247 Sum_probs=102.6
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-----CCCCceEEE-------CCEec--
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV-----ELERGRILI-------DGFDI-- 852 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~-----~p~~G~I~i-------~g~~i-- 852 (1171)
++++|++|.|+. +++++ |.+++|.+++|+|+||||||||++.|+|.. .|+.|++.+ ++..+
T Consensus 4 l~~~~~~~~~~~---~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~D 78 (210)
T 1pui_A 4 LNYQQTHFVMSA---PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVD 78 (210)
T ss_dssp -------CEEEE---SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEE
T ss_pred hhhhhhhheeec---CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEE
Confidence 789999999962 58888 899999999999999999999999999998 888888754 22222
Q ss_pred -CCCC--------hHHHhhheEEEcCCcccccc-cHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchh-hhcCC
Q 001055 853 -AKFG--------LMDLRKILGIIPQSPVLFSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQ-VSEAG 921 (1171)
Q Consensus 853 -~~~~--------~~~~r~~i~~v~Q~~~lf~~-tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~-~~~~~ 921 (1171)
.... ...+++.+++++|....++. .+..++.......+.++. +++.. .++... +....
T Consensus 79 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~---------~~~~~--~~~~~~~v~nK~ 147 (210)
T 1pui_A 79 LPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMI---------EWAVD--SNIAVLVLLTKA 147 (210)
T ss_dssp CCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHH---------HHHHH--TTCCEEEEEECG
T ss_pred CcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHH---------HHHHH--cCCCeEEEEecc
Confidence 1111 12344445555554322222 222333211111111222 22222 222222 35556
Q ss_pred CCCChhHHHH-HHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC
Q 001055 922 ENFSVGQRQL-LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK 971 (1171)
Q Consensus 922 ~~LSgGqkqr-l~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~ 971 (1171)
..+|+||+|| +..+++++.+|+++++|||||++|......+.+.|.+...
T Consensus 148 D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 148 DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 6799999999 8999999999999999999999999999999999987653
No 176
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.62 E-value=2.5e-17 Score=186.29 Aligned_cols=163 Identities=17% Similarity=0.076 Sum_probs=80.4
Q ss_pred EeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcC-CCCCCceEEECCEecCCCChHHHhhheEEEc
Q 001055 790 EDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI-VELERGRILIDGFDIAKFGLMDLRKILGIIP 868 (1171)
Q Consensus 790 ~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~-~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 868 (1171)
+||++.|+.. .++++++|+| +|+||||+|||||++.|+|. ..|++| |.++|.++.. + .-++.+++++
T Consensus 2 ~~l~~~~~~~--~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t--~~~~~~~~~~ 69 (301)
T 2qnr_A 2 SNLPNQVHRK--SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-T--VQIEASTVEI 69 (301)
T ss_dssp ------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEE
T ss_pred CCCcceECCE--EEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-c--ceEeeEEEEe
Confidence 4788899754 6999999998 99999999999999999998 889999 8888877643 1 1245689999
Q ss_pred CCcccc-cccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEE
Q 001055 869 QSPVLF-SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVL 947 (1171)
Q Consensus 869 Q~~~lf-~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlL 947 (1171)
|++.++ ..|+.++..+.......+..+ .+.+.+.. .......++|||||||+.+|||++ +|++
T Consensus 70 q~~~~~~~ltv~Dt~g~~~~~~~~e~~~-----~l~~~l~~-------~~~~~~~~~sgg~rqrv~~ara~~----ll~l 133 (301)
T 2qnr_A 70 EERGVKLRLTVVDTPGYGDAINCRDCFK-----TIISYIDE-------QFERYLHDESGLNRRHIIDNRVHC----CFYF 133 (301)
T ss_dssp C---CCEEEEEEEEC-----------CT-----THHHHHHH-------HHHHHHHHHTSSCCTTCCCCCCCE----EEEE
T ss_pred cCCCcccCcchhhhhhhhhhcCcHHHHH-----HHHHHHHH-------HHHHHHHHhCHHhhhhhhhhhhhh----eeee
Confidence 987654 448888775432111100000 01111111 111122359999999999999986 9999
Q ss_pred ecCCcC-CCHHHHHHHHHHHHHHcC--CcEEEEEecChhh
Q 001055 948 DEATAA-VDVRTDALIQKTIREEFK--SCTMLIIAHRLNT 984 (1171)
Q Consensus 948 DEpTs~-LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~ 984 (1171)
||||++ ||+... +.++++.. +.++|+.+||+..
T Consensus 134 dePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 134 ISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTLT 169 (301)
T ss_dssp ECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGSC
T ss_pred ecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCCC
Confidence 999985 999874 33333332 5788899999753
No 177
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.62 E-value=6.7e-19 Score=205.07 Aligned_cols=177 Identities=12% Similarity=0.100 Sum_probs=128.2
Q ss_pred cceeeeEEEcC--CCEEEEECCCCCcHHHHHHHHhcCCCCCC----ceEEE----CCEecCCCChHHHhhheEEEcCCcc
Q 001055 803 VLHGLSFTIPP--SDKVGIVGRTGAGKSSMLNTLFRIVELER----GRILI----DGFDIAKFGLMDLRKILGIIPQSPV 872 (1171)
Q Consensus 803 ~l~~vs~~i~~--Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~----G~I~i----~g~~i~~~~~~~~r~~i~~v~Q~~~ 872 (1171)
+.+.|+++|.+ |++++|+||||||||||+++|+|+++|++ |+|.+ +|.++ ..+..++ .+|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 45679999999 99999999999999999999999999999 99987 35555 4455555 56999999998
Q ss_pred cccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc-cCCCEEEEec--
Q 001055 873 LFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL-RRSKILVLDE-- 949 (1171)
Q Consensus 873 lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall-~~p~iLlLDE-- 949 (1171)
+|..|+++||.++....... .. ..+|+|++|+..+++++. .+|++++|||
T Consensus 235 ~~~~t~~~nl~~~~~~~~~~------------~~---------------~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~ 287 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTDFITT------------QA---------------FCIQYEGKAHPFLDSMIKEYPFDVTILLKNN 287 (365)
T ss_dssp HHHHHHCSSEEEESSCHHHH------------HH---------------HHHHHHSCCCHHHHHHHHHSCCSEEEEEECC
T ss_pred HHHHhccCCEEEEeCCchHH------------HH---------------HHHHHcCCCCHHHHHHHhhcCCCEEEECCCC
Confidence 88889999997643210000 00 024456677888888775 5899999999
Q ss_pred -CC------cCCCHHHHHHHHHHHHHHcC--CcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhh
Q 001055 950 -AT------AAVDVRTDALIQKTIREEFK--SCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 950 -pT------s~LD~~t~~~i~~~l~~~~~--~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
|+ .++|+..+..+.+.|.+..+ +.++|+++|.-....-||++.++++ +++.|+++||.+
T Consensus 288 ~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~i~~i~~--~l~~~~~~~~~~ 355 (365)
T 1lw7_A 288 TEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIEK--VLNEEEISELQN 355 (365)
T ss_dssp CC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHHHHHHHH--HTSCCCCSSCCC
T ss_pred CCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH--HhcccchhHhhc
Confidence 65 58899999999999877544 7889999986333333777666654 455667777653
No 178
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.62 E-value=1.3e-17 Score=175.21 Aligned_cols=147 Identities=19% Similarity=0.175 Sum_probs=100.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHH
Q 001055 191 GSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEK 260 (1171)
Q Consensus 191 Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~ 260 (1171)
|++++|+||||||||||+++|+|.++ ++| +.. .+..+||++|+. .++ ++++..-. +.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~---~g~-~~~l~~~~-~~------ 67 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTL---SGT-RGPLSRVG-LE------ 67 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEET---TSC-EEEEEECC-CC------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEec---ccc-eehhhccc-cc------
Confidence 78999999999999999999999987 766 321 244689999975 211 11111000 00
Q ss_pred HHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHH-HHHH---HhccCCCEEEEeC--cCCCCCHHHHHHHHHHHHhh
Q 001055 261 AIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV-SMAR---AVYSNSDVFIFDD--PLSALDAHVGRQVFDRCIRG 334 (1171)
Q Consensus 261 ~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv-~LAr---aL~~~~~vllLDE--pts~LD~~~~~~l~~~l~~~ 334 (1171)
.-+......+|..+..+|||||+++ +|++ |+..+|+++|||| |++.+|+...+.+.+.+..
T Consensus 68 ------------~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~- 134 (189)
T 2i3b_A 68 ------------PPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST- 134 (189)
T ss_dssp ------------CCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC-
T ss_pred ------------CCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC-
Confidence 0001112357788889999999998 5555 6899999999999 8999999988877765432
Q ss_pred ccCCCEEEE----EcCCcchhhhcCEEEEEeCCEEEE
Q 001055 335 ELSGKTRVL----VTNQLHFLSQVDRIILVHEGMVKE 367 (1171)
Q Consensus 335 ~~~~~tvi~----vtH~~~~l~~~d~i~~l~~G~i~~ 367 (1171)
.+++|+ |+|+++ +..+|+|..+++|+|..
T Consensus 135 ---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~ 167 (189)
T 2i3b_A 135 ---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFN 167 (189)
T ss_dssp ---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEE
T ss_pred ---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEE
Confidence 245553 349874 34445566666777665
No 179
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.61 E-value=8.5e-17 Score=176.69 Aligned_cols=148 Identities=14% Similarity=0.095 Sum_probs=94.0
Q ss_pred CCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccc--eecCcEEEEecCCCCCcccHHHHHhcCC--
Q 001055 176 AERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA--VIRGTVAYVPQVSWIFNATVRDNILFGS-- 251 (1171)
Q Consensus 176 ~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~--~~~~~i~~v~Q~~~l~~~Tv~eni~~g~-- 251 (1171)
+++++|+|+||++++|+++||+||||||||||+++|+|.+ |.+. ..+..++|++|++.....|+.+|+.+..
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~ 85 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQ 85 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTC
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCcCccccCHhHhhhhhccC
Confidence 3567999999999999999999999999999999999976 2221 2355699999997434679999886421
Q ss_pred -CC------CHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHH
Q 001055 252 -AF------EPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVG 324 (1171)
Q Consensus 252 -~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~ 324 (1171)
.+ +.+.+.+.++. +. .... .....||+||+||+++ +++..+|+++|||||....|..
T Consensus 86 ~~~~~~~~~~~~~~~~~L~~------l~---~~~~----~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~-- 149 (245)
T 2jeo_A 86 YNFDHPDAFDNDLMHRTLKN------IV---EGKT----VEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE-- 149 (245)
T ss_dssp CCTTSGGGBCHHHHHHHHHH------HH---TTCC----EEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--
T ss_pred CCCCCcccccHHHHHHHHHH------HH---CCCC----eecccccccccCccCc-eEEecCCCEEEEeCccccccHH--
Confidence 11 11222222221 11 1111 1235799999999988 6888999999999998888764
Q ss_pred HHHHHHHHhhccCCCEEEEEcCCcchh
Q 001055 325 RQVFDRCIRGELSGKTRVLVTNQLHFL 351 (1171)
Q Consensus 325 ~~l~~~l~~~~~~~~tvi~vtH~~~~l 351 (1171)
+. .. .+.+++++||+...+
T Consensus 150 --l~----~~--~~~~i~v~th~~~~~ 168 (245)
T 2jeo_A 150 --IR----DM--FHLRLFVDTDSDVRL 168 (245)
T ss_dssp --HH----TT--CSEEEEEECCHHHHH
T ss_pred --HH----Hh--cCeEEEEECCHHHHH
Confidence 21 11 368999999974433
No 180
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.61 E-value=3.7e-16 Score=198.42 Aligned_cols=157 Identities=17% Similarity=0.096 Sum_probs=103.4
Q ss_pred cEEEEeeEEEcC----CCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCC-CCccceecCcEEEEecCC
Q 001055 162 AISIRNGYFSWD----SKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV-SDASAVIRGTVAYVPQVS 236 (1171)
Q Consensus 162 ~i~~~~~s~~~~----~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~-~g~~~~~~~~i~~v~Q~~ 236 (1171)
.|.+++...-.- ..+++.+++|+||++++|++++|+|||||||||||+++++..-.. .|... ...-+.++.-.
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~v--pa~~~~i~~~d 717 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYV--PAEEATIGIVD 717 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCB--SSSEEEEECCS
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccc--cchhhhhhHHH
Confidence 577776543320 123468999999999999999999999999999999997542110 01000 00001111111
Q ss_pred CCCc-ccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCc
Q 001055 237 WIFN-ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDP 315 (1171)
Q Consensus 237 ~l~~-~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEp 315 (1171)
.++. ..+.++ +..+..++|+|++|++.++++ +.+|+++|||||
T Consensus 718 ~i~~~ig~~d~-----------------------------------l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP 761 (918)
T 3thx_B 718 GIFTRMGAADN-----------------------------------IYKGRSTFMEELTDTAEIIRK-ATSQSLVILDEL 761 (918)
T ss_dssp EEEEEC---------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEEST
T ss_pred HHHHhCChHHH-----------------------------------HHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCC
Confidence 1110 011111 112235799999999999999 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHh-hc-cCCCEEEEEcCCcchhhhcCE
Q 001055 316 LSALDAHVGRQVFDRCIR-GE-LSGKTRVLVTNQLHFLSQVDR 356 (1171)
Q Consensus 316 ts~LD~~~~~~l~~~l~~-~~-~~~~tvi~vtH~~~~l~~~d~ 356 (1171)
|+|||+.....+...+++ .. ..|.|+|++||+.+....+|+
T Consensus 762 ~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~ 804 (918)
T 3thx_B 762 GRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKN 804 (918)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhh
Confidence 999999988888744444 32 358999999999887765554
No 181
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.61 E-value=8.6e-16 Score=173.54 Aligned_cols=170 Identities=12% Similarity=0.108 Sum_probs=106.8
Q ss_pred CCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHhc---CCCCC
Q 001055 178 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILF---GSAFE 254 (1171)
Q Consensus 178 ~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~---g~~~~ 254 (1171)
.++|+++++.+++|++++|+||||||||||++.|+|.+.|.+|. .+.|+..+.. ...+...+.. +.+..
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~------~v~~~~~e~~--~~~~~~r~~~~~~~~~~~ 93 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGK------KVGLAMLEES--VEETAEDLIGLHNRVRLR 93 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCC------CEEEEESSSC--HHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCC------eEEEEeCcCC--HHHHHHHHHHHHcCCChh
Confidence 35899999999999999999999999999999999999887552 2444443321 0111111110 11100
Q ss_pred -----------HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHH-HHHHHHHHHhccCCCEEEEeCcCC---C-
Q 001055 255 -----------PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ-KQRVSMARAVYSNSDVFIFDDPLS---A- 318 (1171)
Q Consensus 255 -----------~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGq-rqRv~LAraL~~~~~vllLDEpts---~- 318 (1171)
.+.+.+..+. .++..+ . .+.+...++|.+| +||+. |+++..+|+++|+||||+ +
T Consensus 94 ~~~~l~~~~~~~~~~~~~~~~-----~l~~~~---l-~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~ 163 (296)
T 1cr0_A 94 QSDSLKREIIENGKFDQWFDE-----LFGNDT---F-HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSAS 163 (296)
T ss_dssp GCHHHHHHHHHHTHHHHHHHH-----HHSSSC---E-EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC------
T ss_pred hccccccCCCCHHHHHHHHHH-----HhccCC---E-EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCC
Confidence 0111111111 111111 0 1222234689999 77777 999999999999999999 4
Q ss_pred --CCH-HHHHHHHHHHHhhcc-CCCEEEEEcCCc--c--------------------hhh-hcCEEEEEeCCEE
Q 001055 319 --LDA-HVGRQVFDRCIRGEL-SGKTRVLVTNQL--H--------------------FLS-QVDRIILVHEGMV 365 (1171)
Q Consensus 319 --LD~-~~~~~l~~~l~~~~~-~~~tvi~vtH~~--~--------------------~l~-~~d~i~~l~~G~i 365 (1171)
+|+ .....+.+.+....+ .|.|+|++||+. + .+. .||+|++|++|+.
T Consensus 164 ~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 164 GESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -----CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 455 566677776666543 389999999995 3 444 4899999998863
No 182
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.60 E-value=2.5e-16 Score=170.73 Aligned_cols=164 Identities=10% Similarity=-0.014 Sum_probs=115.0
Q ss_pred CcceeeeE-EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhh---heEEEcCCccccccc
Q 001055 802 PVLHGLSF-TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRK---ILGIIPQSPVLFSGT 877 (1171)
Q Consensus 802 ~~l~~vs~-~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~---~i~~v~Q~~~lf~~t 877 (1171)
+.|+++.. .+++|++++|+||||||||||++.|++...+.+|.|.+.+.+. +...++. .+++.+|+....
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--- 83 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIEK--- 83 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBTT---
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhhC---
Confidence 57888888 8999999999999999999999999999888889988876443 3333332 344444432111
Q ss_pred HHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC--EEEEecCCcCC-
Q 001055 878 VRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK--ILVLDEATAAV- 954 (1171)
Q Consensus 878 v~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~--iLlLDEpTs~L- 954 (1171)
++......... .. + ... ....|.++.++...+.+...+|+ ++++||||+.+
T Consensus 84 ---~~~~~~~~~~~--------------~~--~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~ 137 (235)
T 2w0m_A 84 ---KLIIIDALMKE--------------KE--D----QWS---LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFL 137 (235)
T ss_dssp ---TEEEEECCC--------------------C----TTB---CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSS
T ss_pred ---CEEEEeccccc--------------cC--c----eee---ecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhc
Confidence 11111000000 00 0 001 12348999998888888888999 99999999888
Q ss_pred -CHHHHHHHHHHHHHHc--CCcEEEEEecCh--------hhhhh-cCEEEEEeCc
Q 001055 955 -DVRTDALIQKTIREEF--KSCTMLIIAHRL--------NTIID-CDRILLLDSG 997 (1171)
Q Consensus 955 -D~~t~~~i~~~l~~~~--~~~tvi~vtH~~--------~~~~~-~d~i~vl~~G 997 (1171)
|+.....+.+.|+++. .++|+|+++|+. ..+.. ||+|++|+..
T Consensus 138 ~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 138 DKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp SCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 9988888888888764 479999999999 44666 9999999864
No 183
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.60 E-value=1.1e-18 Score=185.17 Aligned_cols=158 Identities=16% Similarity=0.144 Sum_probs=115.9
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC-------------CCCceEEECCEecCCCChHHHhhheEEEcCCcccccccH
Q 001055 812 PPSDKVGIVGRTGAGKSSMLNTLFRIVE-------------LERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTV 878 (1171)
Q Consensus 812 ~~Ge~v~ivG~nGsGKSTLl~~l~g~~~-------------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv 878 (1171)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.++...+...+++.+ +|++++|.+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~ 76 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEF 76 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeee
Confidence 5899999999999999999999999986 78897 589988888888888876 79999999999
Q ss_pred HhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH-HhccCCCEEEEecCCcCCCHH
Q 001055 879 RFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR-ALLRRSKILVLDEATAAVDVR 957 (1171)
Q Consensus 879 ~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr-all~~p~iLlLDEpTs~LD~~ 957 (1171)
..|+. . .+++++.++++.....- .+..|.|+++.... ++ .|| +++.+|++++|||||+++|.+
T Consensus 77 ~~n~~-g--~~~~~i~~~~~~~~~~~-~~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~~ 140 (198)
T 1lvg_A 77 SGNLY-G--TSKEAVRAVQAMNRICV-LDVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNTE 140 (198)
T ss_dssp TTEEE-E--EEHHHHHHHHHTTCEEE-EECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTCS
T ss_pred cCccC-C--CCHHHHHHHHHcCCcEE-EECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCCC
Confidence 99983 2 24667777765421100 00112233333211 12 566 899999999999999999999
Q ss_pred HHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeC
Q 001055 958 TDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDS 996 (1171)
Q Consensus 958 t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~ 996 (1171)
+++.|++.|.....+ +.++| +. ..||+|+++++
T Consensus 141 ~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 141 TEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp CHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred CHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 999999998876543 35567 33 66999988764
No 184
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.59 E-value=6e-16 Score=196.48 Aligned_cols=167 Identities=13% Similarity=0.083 Sum_probs=108.2
Q ss_pred cEEEEeeEEEe-----CCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHH
Q 001055 786 SIKFEDVVLRY-----RPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDL 860 (1171)
Q Consensus 786 ~i~~~~vs~~y-----~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~ 860 (1171)
.+.+++...-. +.+...+++|++|++++|++++|+||||||||||++++.+..-.
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~-------------------- 699 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM-------------------- 699 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH--------------------
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH--------------------
Confidence 46776653322 11224799999999999999999999999999999999754211
Q ss_pred hhheEEEcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 861 RKILGIIPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 861 r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
.+.-.++|++..-+ ++.+++. . ..++.+. +......+|+|++|+..++++ +.
T Consensus 700 aq~g~~vpa~~~~i--~~~d~i~--~------------~ig~~d~-----------l~~~~stfs~em~~~~~il~~-a~ 751 (918)
T 3thx_B 700 AQIGSYVPAEEATI--GIVDGIF--T------------RMGAADN-----------IYKGRSTFMEELTDTAEIIRK-AT 751 (918)
T ss_dssp HHHTCCBSSSEEEE--ECCSEEE--E------------EC---------------------CCHHHHHHHHHHHHHH-CC
T ss_pred hhcCccccchhhhh--hHHHHHH--H------------hCChHHH-----------HHHhHHHhhHHHHHHHHHHHh-cc
Confidence 11112334332110 0011110 0 0111111 112235799999999999999 89
Q ss_pred CCCEEEEecCCcCCCHHHHHHHH-HHHHHHc--CCcEEEEEecChhhhhhcCEEEE-EeCcEEE
Q 001055 941 RSKILVLDEATAAVDVRTDALIQ-KTIREEF--KSCTMLIIAHRLNTIIDCDRILL-LDSGRVL 1000 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~-~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~v-l~~G~i~ 1000 (1171)
+|+++||||||+|+|+.....+. ..++.+. .++|+|++||+++....||+.-- +.++++.
T Consensus 752 ~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~~~~v~n~~~~ 815 (918)
T 3thx_B 752 SQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMG 815 (918)
T ss_dssp TTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHTTTTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhcccceEEEEEE
Confidence 99999999999999999888776 5555542 48999999999988766665431 3444543
No 185
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.59 E-value=1.4e-16 Score=186.74 Aligned_cols=166 Identities=14% Similarity=0.172 Sum_probs=100.3
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhhe
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 864 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 864 (1171)
+.|.++||+++|++. ++++|++|+| +|+|+||||||||+++|+|...|..| .+|.++...+ ...+..+
T Consensus 10 ~~l~~~~l~~~y~~~--~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~i 77 (418)
T 2qag_C 10 GYVGFANLPNQVYRK--SVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQS 77 (418)
T ss_dssp -----CCCCCCTTTT--TCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEE
T ss_pred CcEEEEecceeECCE--EEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeeeE
Confidence 458999999999753 6999999998 99999999999999999999887666 2443332111 1124568
Q ss_pred EEEcCCcccc-cccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC
Q 001055 865 GIIPQSPVLF-SGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK 943 (1171)
Q Consensus 865 ~~v~Q~~~lf-~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~ 943 (1171)
++++|++.++ ..||.+|+.+.......+.++. +.+++.. .++.+.+||++|||+++++|+
T Consensus 78 ~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~-----i~~~i~~--------------~~~~~l~qr~~IaRal~~d~~ 138 (418)
T 2qag_C 78 KVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP-----VIDYIDS--------------KFEDYLNAESRVNRRQMPDNR 138 (418)
T ss_dssp ECC------CEEEEEEECC-----------CHH-----HHHHHHH--------------HHHHHTTTSCC-CCCCCCCC-
T ss_pred EEEEecCCcccceeeeechhhhhhccchhhHHH-----HHHHHHH--------------HHHHHHHHHHHHHHHhccCCC
Confidence 9999998776 4589988865322211111111 1222221 245567789999999999999
Q ss_pred ---EEEEecCC-cCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhh
Q 001055 944 ---ILVLDEAT-AAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI 985 (1171)
Q Consensus 944 ---iLlLDEpT-s~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~ 985 (1171)
+|++|||| .+||+.... + ++.+..+.++|+|.|..+.+
T Consensus 139 ~~vlL~ldePt~~~L~~~d~~-~---lk~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 139 VQCCLYFIAPSGHGLKPLDIE-F---MKRLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp CCEEEEECCC-CCSCCHHHHH-H---HHHHTTTSEEEEEEESTTSS
T ss_pred eeEEEEEecCcccCCCHHHHH-H---HHHHhccCcEEEEEEcccCc
Confidence 99999999 699987742 2 33333578888888876654
No 186
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.58 E-value=2.1e-16 Score=178.17 Aligned_cols=149 Identities=15% Similarity=0.068 Sum_probs=99.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCCh----HHH--hhheEEEcCCcccccc-cHHhhccCC
Q 001055 813 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL----MDL--RKILGIIPQSPVLFSG-TVRFNLDPF 885 (1171)
Q Consensus 813 ~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~----~~~--r~~i~~v~Q~~~lf~~-tv~~nl~~~ 885 (1171)
+|++++|+||||||||||+++|+|+++|++|+|.++|.|+..... ..+ |..+++++|++.++.. |+.+|+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999876542 222 4569999999877654 777776320
Q ss_pred CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCC--EEEEecCCcCCCHHHHHHHH
Q 001055 886 SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSK--ILVLDEATAAVDVRTDALIQ 963 (1171)
Q Consensus 886 ~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~--iLlLDEpTs~LD~~t~~~i~ 963 (1171)
.. .+.+..+-..+ |.... ....++..++||++||||+..+|+ +|.|| |+++.+ +.
T Consensus 181 -----------~~-~~~d~~llDt~-G~~~~---~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~------~~ 237 (304)
T 1rj9_A 181 -----------KA-RGYDLLFVDTA-GRLHT---KHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQN------GL 237 (304)
T ss_dssp -----------HH-HTCSEEEECCC-CCCTT---CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTH------HH
T ss_pred -----------Hh-CCCCEEEecCC-CCCCc---hHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHH------HH
Confidence 00 00000000001 11100 011245666999999999999999 55566 555543 33
Q ss_pred HHHHHHc--CCcEEEEEecChhh
Q 001055 964 KTIREEF--KSCTMLIIAHRLNT 984 (1171)
Q Consensus 964 ~~l~~~~--~~~tvi~vtH~~~~ 984 (1171)
+.+++.. .+.|+|++||+...
T Consensus 238 ~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 238 EQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHHHHHHCCSEEEEECTTSS
T ss_pred HHHHHHHHHcCCcEEEEECCccc
Confidence 3333322 37899999998544
No 187
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.57 E-value=1.6e-17 Score=177.94 Aligned_cols=139 Identities=14% Similarity=0.153 Sum_probs=105.1
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccc---cHHhhccCC-C
Q 001055 811 IPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG---TVRFNLDPF-S 886 (1171)
Q Consensus 811 i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~---tv~~nl~~~-~ 886 (1171)
.++|+++||+||||||||||+++|.|++.| .++|++|++.++.. |+++|+... .
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999999875 58999999988743 676664321 1
Q ss_pred ---CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhH----HHHHHHHHHhccCCCEEEEecCCcC------
Q 001055 887 ---EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ----RQLLSLSRALLRRSKILVLDEATAA------ 953 (1171)
Q Consensus 887 ---~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGq----kqrl~lArall~~p~iLlLDEpTs~------ 953 (1171)
....+.+.++++..++.+ .+...+..+|+|+ +||+++||+++.+|+++++||||++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~-----------~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i 129 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGL-----------PVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKV 129 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTC-----------CEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEE
T ss_pred ChhhhhHHHHHHHHHHHHcCC-----------CcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEE
Confidence 122344555554432221 2223355688886 5789999999999999999999999
Q ss_pred -CCHHHHHHHHHHHHHHc--CCcEEEEEecCh
Q 001055 954 -VDVRTDALIQKTIREEF--KSCTMLIIAHRL 982 (1171)
Q Consensus 954 -LD~~t~~~i~~~l~~~~--~~~tvi~vtH~~ 982 (1171)
||+.++..+++.+.+.. .++|++.++|+.
T Consensus 130 ~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 130 FVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999887642 588999999984
No 188
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.56 E-value=1.8e-17 Score=177.60 Aligned_cols=140 Identities=20% Similarity=0.236 Sum_probs=105.5
Q ss_pred ecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCC---cccHHHHHhcCC--C--CCHHHHHH
Q 001055 188 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIF---NATVRDNILFGS--A--FEPARYEK 260 (1171)
Q Consensus 188 i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~---~~Tv~eni~~g~--~--~~~~~~~~ 260 (1171)
.++|++++|+||||||||||+++|+|.++| .++|++|++.++ ..|+++++.+.. + .+.+++.+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLE 72 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHH
Confidence 578999999999999999999999998865 589999999875 347888876532 1 23344555
Q ss_pred HHHHcCchHHHhcCCCCCccccCCCCCccChHH----HHHHHHHHHhccCCCEEEEeCcCCC-------CCHHHHHHHHH
Q 001055 261 AIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQ----KQRVSMARAVYSNSDVFIFDDPLSA-------LDAHVGRQVFD 329 (1171)
Q Consensus 261 ~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGq----rqRv~LAraL~~~~~vllLDEpts~-------LD~~~~~~l~~ 329 (1171)
.++..++.+. +...+..+|+|| +||+++||+++.+|+++++||||++ ||+.....+.+
T Consensus 73 ~l~~~~~~~~-----------~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r 141 (211)
T 3asz_A 73 HAQALLRGLP-----------VEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIR 141 (211)
T ss_dssp HHHHHHTTCC-----------EEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHH
T ss_pred HHHHHHcCCC-----------cCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHH
Confidence 5544332221 222346788886 5789999999999999999999999 99998888887
Q ss_pred HHHhh-ccCCCEEEEEcCCc
Q 001055 330 RCIRG-ELSGKTRVLVTNQL 348 (1171)
Q Consensus 330 ~l~~~-~~~~~tvi~vtH~~ 348 (1171)
.+.+. ..+|+|++.++|+.
T Consensus 142 ~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 142 RLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp HHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHH
Confidence 66553 34588999999974
No 189
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.56 E-value=1.1e-16 Score=180.81 Aligned_cols=155 Identities=16% Similarity=0.162 Sum_probs=81.9
Q ss_pred EeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcC-CCCCCCc--------cceecCcEEEEecCC
Q 001055 166 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGE-LPPVSDA--------SAVIRGTVAYVPQVS 236 (1171)
Q Consensus 166 ~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~-~~~~~g~--------~~~~~~~i~~v~Q~~ 236 (1171)
.|+++.|. ++.++++++|+| +|+|+||+|||||++.|.|. ..|++|. .......+++++|++
T Consensus 2 ~~l~~~~~---~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~ 72 (301)
T 2qnr_A 2 SNLPNQVH---RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEER 72 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC------------------------CEEEEC--
T ss_pred CCCcceEC---CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCC
Confidence 47888885 357999999998 99999999999999999997 7777661 011123479999987
Q ss_pred CCC-cccHHHHHhcCCCCCH-HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeC
Q 001055 237 WIF-NATVRDNILFGSAFEP-ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDD 314 (1171)
Q Consensus 237 ~l~-~~Tv~eni~~g~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDE 314 (1171)
.++ ..||+|++.++..... +.+....+. +.+..+ ....++|||||||+.+|||++ ++++||
T Consensus 73 ~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l~~~~~-----------~~~~~~sgg~rqrv~~ara~~----ll~lde 135 (301)
T 2qnr_A 73 GVKLRLTVVDTPGYGDAINCRDCFKTIISY--IDEQFE-----------RYLHDESGLNRRHIIDNRVHC----CFYFIS 135 (301)
T ss_dssp -CCEEEEEEEEC-----------CTTHHHH--HHHHHH-----------HHHHHHTSSCCTTCCCCCCCE----EEEEEC
T ss_pred CcccCcchhhhhhhhhhcCcHHHHHHHHHH--HHHHHH-----------HHHHHhCHHhhhhhhhhhhhh----eeeeec
Confidence 664 6799998877632211 111111111 111111 112479999999999999986 999999
Q ss_pred cCCC-CCHHHHHHHHHHHHhhccCCCEEEEEcCCcc
Q 001055 315 PLSA-LDAHVGRQVFDRCIRGELSGKTRVLVTNQLH 349 (1171)
Q Consensus 315 pts~-LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~ 349 (1171)
||++ ||+... .++..+. ...+.++|+.+||+.
T Consensus 136 Pt~~~Ld~~~~-~~l~~l~--~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 136 PFGHGLKPLDV-AFMKAIH--NKVNIVPVIAKADTL 168 (301)
T ss_dssp SSSSSCCHHHH-HHHHHHT--TTSCEEEEECCGGGS
T ss_pred CcccCCCHHHH-HHHHHHH--hcCCEEEEEEeCCCC
Confidence 9986 999874 2323221 223678888999974
No 190
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.55 E-value=8.3e-16 Score=166.51 Aligned_cols=140 Identities=14% Similarity=0.156 Sum_probs=86.7
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCC--------------CCCcccHHHHHhcCCC
Q 001055 187 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS--------------WIFNATVRDNILFGSA 252 (1171)
Q Consensus 187 ~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~--------------~l~~~Tv~eni~~g~~ 252 (1171)
.+++|++++|+||||||||||+++|+|.+.+..+... ..+.+-|+..+. .++..|+.||+.+..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~-~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~- 98 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGG-LNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVAR- 98 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC-CSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEE-
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCC-CCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEe-
Confidence 6999999999999999999999999996554322110 122333443332 222223333332211
Q ss_pred CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChH-HHHHHHHHHHhcc-------CCCEEEEeCcCCCCCHH--
Q 001055 253 FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG-QKQRVSMARAVYS-------NSDVFIFDDPLSALDAH-- 322 (1171)
Q Consensus 253 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGG-qrqRv~LAraL~~-------~~~vllLDEpts~LD~~-- 322 (1171)
..+++ +++.+..+++++. +|++++|||||+++|+.
T Consensus 99 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~ 143 (231)
T 4a74_A 99 -----------------------------------AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYI 143 (231)
T ss_dssp -----------------------------------CCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSC
T ss_pred -----------------------------------cCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccC
Confidence 12333 3334555555555 89999999999999984
Q ss_pred -----H-----HHHHHHHHHhhcc-CCCEEEEEcCCcch----hhh-cCEEEEEeCC
Q 001055 323 -----V-----GRQVFDRCIRGEL-SGKTRVLVTNQLHF----LSQ-VDRIILVHEG 363 (1171)
Q Consensus 323 -----~-----~~~l~~~l~~~~~-~~~tvi~vtH~~~~----l~~-~d~i~~l~~G 363 (1171)
. .+.+++.+.+..+ .|.|+|+|||.... +.. +|+++.|++|
T Consensus 144 ~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 144 GRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 1 2255555555433 48999999995544 665 6999999875
No 191
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.55 E-value=6.3e-16 Score=169.67 Aligned_cols=169 Identities=14% Similarity=0.066 Sum_probs=92.8
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeE--EecCCCEEEEEcCCCccHHHHHHHHh--cCCCCCCCccceec-----------C
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINL--DIPVGSLVAIVGGTGEGKTSLISAML--GELPPVSDASAVIR-----------G 227 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl--~i~~Ge~v~lvG~nGsGKSTLl~~l~--G~~~~~~g~~~~~~-----------~ 227 (1171)
+++++++..++ .|+++ + .|++|++++|+||||||||||+++|+ |..++..+...... .
T Consensus 7 ~~~~~i~tg~~------~lD~~-l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (251)
T 2ehv_A 7 QPVRRVKSGIP------GFDEL-IEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMA 79 (251)
T ss_dssp -CCCEECCSCT------TTGGG-TTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHH
T ss_pred cccceeecCCH------hHHHH-hcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHH
Confidence 44455544443 34444 2 79999999999999999999999999 65344332211100 0
Q ss_pred cEEEEecCCCCC-cccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccC
Q 001055 228 TVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN 306 (1171)
Q Consensus 228 ~i~~v~Q~~~l~-~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~ 306 (1171)
.+++.+|+.... ..++.++..... ..... ..-......+-++..+...+..-..+
T Consensus 80 ~~g~~~~~~~~~~~~~~~~~~~~~~---------~~~~~---------------~~~~~~~~~~~~~~~~~~~~~l~~~~ 135 (251)
T 2ehv_A 80 SFGWDFEKYEKEGKIAIVDGVSSVV---------GLPSE---------------EKFVLEDRFNVDNFLRYIYRVVKAIN 135 (251)
T ss_dssp TTTCCHHHHHHTTSEEEEC-------------------------------------------CCHHHHHHHHHHHHHHTT
T ss_pred HcCCChHHHhhcCCEEEEEcccccc---------ccccc---------------cceeccCcccHHHHHHHHHHHHHhhC
Confidence 122222221110 011111110000 00000 00000112334555555555555689
Q ss_pred CCEEEEeCcCCCCC-----HHHHHHHHHHHHhhccCCCEEEEEcCCcchh----------hhc-CEEEEEeC
Q 001055 307 SDVFIFDDPLSALD-----AHVGRQVFDRCIRGELSGKTRVLVTNQLHFL----------SQV-DRIILVHE 362 (1171)
Q Consensus 307 ~~vllLDEpts~LD-----~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l----------~~~-d~i~~l~~ 362 (1171)
|++++|||||++|| +..++.+.+.+......|+|+|++||++... ..| |+|++|++
T Consensus 136 p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 136 AKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp CSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred CCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 99999999999997 6666667765555555689999999999886 457 99999964
No 192
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.54 E-value=9.9e-16 Score=164.73 Aligned_cols=143 Identities=15% Similarity=0.128 Sum_probs=103.0
Q ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCceEEECCEecCCCChHHHhhheEEEcCCcccccc-cH----Hhh
Q 001055 809 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TV----RFN 881 (1171)
Q Consensus 809 ~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p--~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv----~~n 881 (1171)
-..++|++++|+||||||||||+++|+|+++| ..|.|.+.+.+... ..+..++|+||++.+|.. ++ .||
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 46789999999999999999999999999986 68999988866432 235679999999988865 55 455
Q ss_pred ccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHH
Q 001055 882 LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 961 (1171)
Q Consensus 882 l~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~ 961 (1171)
+.++... .|-.+++ ++.++..++++||| ||+.+...
T Consensus 87 ~~~~~~~------------------------------------yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~ 122 (219)
T 1s96_A 87 AEVFGNY------------------------------------YGTSREA---IEQVLATGVDVFLD-----IDWQGAQQ 122 (219)
T ss_dssp EEETTEE------------------------------------EEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHH
T ss_pred HHHHhcc------------------------------------CCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHH
Confidence 5432110 0000111 23344457999999 99999999
Q ss_pred HHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEeCcEEEEecChhHHhh
Q 001055 962 IQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYDTPEELLS 1010 (1171)
Q Consensus 962 i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g~~~el~~ 1010 (1171)
+.+.+. .+.||++++|+++.+.. |+ +..| .++++++..
T Consensus 123 i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 123 IRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp HHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred HHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 999876 57899999999999876 32 5556 567777654
No 193
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.54 E-value=2e-15 Score=190.35 Aligned_cols=167 Identities=11% Similarity=0.062 Sum_probs=106.7
Q ss_pred cEEEEeeEEEcCC--CCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCC-CCCccce-ecCcEEEEecCCC
Q 001055 162 AISIRNGYFSWDS--KAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-VSDASAV-IRGTVAYVPQVSW 237 (1171)
Q Consensus 162 ~i~~~~~s~~~~~--~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~-~~g~~~~-~~~~i~~v~Q~~~ 237 (1171)
.|.+++..--.-. .+++.+++|++|+ ++|++++|+||||||||||||+++|...+ ..|.... .+..+++++|
T Consensus 577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~--- 652 (800)
T 1wb9_A 577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDR--- 652 (800)
T ss_dssp CEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCE---
T ss_pred CEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhcccceeHHH---
Confidence 4777765321100 0246799999999 99999999999999999999999997422 1221110 1123444444
Q ss_pred CC-cccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcC
Q 001055 238 IF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL 316 (1171)
Q Consensus 238 l~-~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpt 316 (1171)
+| ..++.||+..+ ..++|+|+++ ++.+...+.+|+++|||||+
T Consensus 653 i~~~~~~~d~l~~~-----------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~ 696 (800)
T 1wb9_A 653 IFTRVGAADDLASG-----------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIG 696 (800)
T ss_dssp EEEEEC----------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCC
T ss_pred HHhhCCHHHHHHhh-----------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCC
Confidence 33 33444444321 1246777764 44445568999999999999
Q ss_pred CCCCHHHHHHH-HHHHHhhcc-CCCEEEEEcCCcchhhhcCEEEEEeCCEEEEe
Q 001055 317 SALDAHVGRQV-FDRCIRGEL-SGKTRVLVTNQLHFLSQVDRIILVHEGMVKEE 368 (1171)
Q Consensus 317 s~LD~~~~~~l-~~~l~~~~~-~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~ 368 (1171)
+|+|+.....+ +..+..... .|.++|++||+.+....+|++..+.+|++...
T Consensus 697 ~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 697 RGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 (800)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEE
T ss_pred CCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEE
Confidence 99888766655 343333333 48999999999988777787767777776543
No 194
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.53 E-value=1.3e-15 Score=175.30 Aligned_cols=148 Identities=16% Similarity=0.197 Sum_probs=98.5
Q ss_pred EeeEEEcCCCCCCCceeeeeE-------EecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCC
Q 001055 166 RNGYFSWDSKAERPTLLNINL-------DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWI 238 (1171)
Q Consensus 166 ~~~s~~~~~~~~~~~l~~isl-------~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l 238 (1171)
.+++++|... ..+.|+++.+ ...+|++++|+||||||||||+++|+|+++|+.|+.. -.+ .+|.-
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i------~t~-ed~~e 163 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHI------LTI-EDPIE 163 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEE------EEE-ESSCC
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEE------EEc-cCcHH
Confidence 4566776532 4567777776 7789999999999999999999999999988743322 111 11110
Q ss_pred CcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCC
Q 001055 239 FNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSA 318 (1171)
Q Consensus 239 ~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~ 318 (1171)
+ ..+.. .+. +. ...++.. .++-.+ +|||||..+||++++||||
T Consensus 164 ~----------~~~~~----------~~~---v~------q~~~~~~--~~~~~~----~La~aL~~~PdvillDEp~-- 206 (356)
T 3jvv_A 164 F----------VHESK----------KCL---VN------QREVHRD--TLGFSE----ALRSALREDPDIILVGEMR-- 206 (356)
T ss_dssp S----------CCCCS----------SSE---EE------EEEBTTT--BSCHHH----HHHHHTTSCCSEEEESCCC--
T ss_pred h----------hhhcc----------ccc---ee------eeeeccc--cCCHHH----HHHHHhhhCcCEEecCCCC--
Confidence 0 00000 000 00 0011111 123222 9999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCC
Q 001055 319 LDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEG 363 (1171)
Q Consensus 319 LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G 363 (1171)
|+++.+.+.+ ....|.++++++|+.+.+..+||++.|..|
T Consensus 207 -d~e~~~~~~~----~~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 207 -DLETIRLALT----AAETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp -SHHHHHHHHH----HHHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred -CHHHHHHHHH----HHhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 7777555443 334589999999999999888999888654
No 195
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.53 E-value=1.9e-15 Score=190.47 Aligned_cols=152 Identities=14% Similarity=0.137 Sum_probs=103.0
Q ss_pred CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCceEEECCEecCCCChHHHhhheEEEcCCcccccc-cH
Q 001055 801 PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL-ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TV 878 (1171)
Q Consensus 801 ~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv 878 (1171)
..+++|++|+ ++|++++|+||||||||||+++|+|+..+ ..| ..+.. -+..+++++| +|.. ++
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa-----~~~~i~~~~~---i~~~~~~ 659 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA-----QKVEIGPIDR---IFTRVGA 659 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS-----SEEEECCCCE---EEEEEC-
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch-----hcccceeHHH---HHhhCCH
Confidence 3689999999 99999999999999999999999997532 222 11111 1234555554 3322 34
Q ss_pred HhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHH
Q 001055 879 RFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRT 958 (1171)
Q Consensus 879 ~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t 958 (1171)
.+|+.. + ...+|+|+++ ++.+...+.+|+++||||||+|+|+..
T Consensus 660 ~d~l~~---------------------------~--------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d 703 (800)
T 1wb9_A 660 ADDLAS---------------------------G--------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYD 703 (800)
T ss_dssp ---------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSH
T ss_pred HHHHHh---------------------------h--------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhH
Confidence 333311 1 1246776654 444555689999999999999998866
Q ss_pred HHHH-HHHHHHHc--CCcEEEEEecChhhhhhcCEEEEEeCcEEEEec
Q 001055 959 DALI-QKTIREEF--KSCTMLIIAHRLNTIIDCDRILLLDSGRVLEYD 1003 (1171)
Q Consensus 959 ~~~i-~~~l~~~~--~~~tvi~vtH~~~~~~~~d~i~vl~~G~i~~~g 1003 (1171)
...+ ++.++.+. .++|+|++||+.+....||++..+.+|++....
T Consensus 704 ~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~~ 751 (800)
T 1wb9_A 704 GLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALE 751 (800)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEEE
Confidence 5554 56666554 379999999999887778888778888876553
No 196
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.52 E-value=2.1e-14 Score=148.06 Aligned_cols=79 Identities=22% Similarity=0.309 Sum_probs=70.7
Q ss_pred CCCCChhHHHHHHHHHHhc----cCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEEe-
Q 001055 921 GENFSVGQRQLLSLSRALL----RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLD- 995 (1171)
Q Consensus 921 ~~~LSgGqkqrl~lArall----~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl~- 995 (1171)
...||||||||++|||+|+ ++|+++||||||++||+.+.+.+.+.|++..++.++|+|||+...+..||+++.+.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~ 141 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSM 141 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEe
Confidence 3569999999999999996 56799999999999999999999999999887889999999998888899999764
Q ss_pred -CcEE
Q 001055 996 -SGRV 999 (1171)
Q Consensus 996 -~G~i 999 (1171)
+|..
T Consensus 142 ~~g~s 146 (173)
T 3kta_B 142 RDGVS 146 (173)
T ss_dssp ETTEE
T ss_pred cCCEE
Confidence 6654
No 197
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.52 E-value=2.6e-16 Score=182.33 Aligned_cols=153 Identities=15% Similarity=0.149 Sum_probs=113.7
Q ss_pred EEEeeEEE---eCCCCCCcc---------eeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCC
Q 001055 788 KFEDVVLR---YRPELPPVL---------HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF 855 (1171)
Q Consensus 788 ~~~~vs~~---y~~~~~~~l---------~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~ 855 (1171)
+|++|+|+ |++...++| +++||.|++|+.++|+||||||||||+++|+|+++|++|.|.++|. .++
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~--~e~ 214 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV--PEL 214 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS--SCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc--ccc
Confidence 78899998 853112355 9999999999999999999999999999999999999999999974 344
Q ss_pred ChHHHhhheEEEc-CCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHH
Q 001055 856 GLMDLRKILGIIP-QSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSL 934 (1171)
Q Consensus 856 ~~~~~r~~i~~v~-Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~l 934 (1171)
.....++.+++++ |++.+ .++++..++-.|
T Consensus 215 ~~~~~~~~v~~v~~q~~~~-------------------------------------------------~~~~~~t~~~~i 245 (361)
T 2gza_A 215 FLPDHPNHVHLFYPSEAKE-------------------------------------------------EENAPVTAATLL 245 (361)
T ss_dssp CCTTCSSEEEEECC-----------------------------------------------------------CCHHHHH
T ss_pred CccccCCEEEEeecCcccc-------------------------------------------------ccccccCHHHHH
Confidence 4444677899998 66431 012223466777
Q ss_pred HHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCC-cEEEEEecChhhhhhcCEEEEEeCcE
Q 001055 935 SRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS-CTMLIIAHRLNTIIDCDRILLLDSGR 998 (1171)
Q Consensus 935 Arall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~-~tvi~vtH~~~~~~~~d~i~vl~~G~ 998 (1171)
+.++..+|+.+++|||+. ..+.+.|+.+..| .|++.++|..+....+||+..+..|.
T Consensus 246 ~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 246 RSCLRMKPTRILLAELRG-------GEAYDFINVAASGHGGSITSCHAGSCELTFERLALMVLQN 303 (361)
T ss_dssp HHHTTSCCSEEEESCCCS-------THHHHHHHHHHTTCCSCEEEEECSSHHHHHHHHHHHHTTS
T ss_pred HHHHhcCCCEEEEcCchH-------HHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHHHHhcc
Confidence 888888999999999986 2344555554444 57899999987666699998887653
No 198
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.51 E-value=5.2e-15 Score=172.45 Aligned_cols=179 Identities=13% Similarity=0.123 Sum_probs=115.5
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCE--EEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhhe
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDK--VGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKIL 864 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~--v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 864 (1171)
+++++ +++|++. + |+++||++++|++ +||+||||||||||+++|+|+. ++|.++....+...++.+
T Consensus 17 l~~~~-~~~y~~~--~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~i 84 (427)
T 2qag_B 17 VPLAG-HVGFDSL--P-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQSN 84 (427)
T ss_dssp CCCCC-CC-CC----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEEE
T ss_pred EEEee-EEEECCe--e-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEeeE
Confidence 66667 7888643 5 9999999999999 9999999999999999999984 445555443444456689
Q ss_pred EEEcCCccccc-ccHHhhccCCCCCCHHHHHHH----HHHhcHHHHHHHc-------cCCcchh-------hhcCCCCCC
Q 001055 865 GIIPQSPVLFS-GTVRFNLDPFSEHSDADLWEA----LERAHLKDAIRRN-------SLGLDAQ-------VSEAGENFS 925 (1171)
Q Consensus 865 ~~v~Q~~~lf~-~tv~~nl~~~~~~~~~~i~~~----l~~~~~~~~i~~l-------p~gl~~~-------~~~~~~~LS 925 (1171)
+|++|++.++. .|+.+|+.+.........+.. ++ ..+.+++... +...++. +.+.+..|+
T Consensus 85 ~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~-~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~ 163 (427)
T 2qag_B 85 TYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFID-AQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLK 163 (427)
T ss_dssp EEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHH-HHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---C
T ss_pred EEEeecCccccccchhhhhhhhhccccchhhhHHHHHHH-HHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCC
Confidence 99999998774 599999976544333221111 11 1233334332 1112222 122334577
Q ss_pred hhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHH-Hc-CCcEEEEEecC
Q 001055 926 VGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIRE-EF-KSCTMLIIAHR 981 (1171)
Q Consensus 926 gGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~-~~-~~~tvi~vtH~ 981 (1171)
-.+ +.++++|..+++|+++||||..|.+.....+.+.+++ +. .|.+|+.++.+
T Consensus 164 ~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 164 SLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 665 7999999999999999999999999888888888886 43 46788888864
No 199
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.50 E-value=3.1e-14 Score=154.12 Aligned_cols=169 Identities=17% Similarity=0.127 Sum_probs=106.7
Q ss_pred CCceeeeeE-EecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHh-cCCCCCH
Q 001055 178 RPTLLNINL-DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNIL-FGSAFEP 255 (1171)
Q Consensus 178 ~~~l~~isl-~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~-~g~~~~~ 255 (1171)
-+.|+++.. .+++|++++|+||||||||||++.|++...+.+| .+.|+..+.. ...+.+.+. ++.....
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~-------~v~~~~~~~~--~~~~~~~~~~~~~~~~~ 79 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGD-------PCIYVTTEES--RDSIIRQAKQFNWDFEE 79 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTC-------CEEEEESSSC--HHHHHHHHHHTTCCCGG
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCC-------eEEEEEcccC--HHHHHHHHHHhcchHHH
Confidence 457888888 8999999999999999999999999988765432 3555554421 111111111 1111000
Q ss_pred HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCC--EEEEeCcCCCC--CHHHHHHHHHHH
Q 001055 256 ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD--VFIFDDPLSAL--DAHVGRQVFDRC 331 (1171)
Q Consensus 256 ~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~--vllLDEpts~L--D~~~~~~l~~~l 331 (1171)
+.. ..+ ..++.......... .....|.++.++...+.+...+|+ ++++||||+.+ |+...+.+++.+
T Consensus 80 --~~~----~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l 150 (235)
T 2w0m_A 80 --YIE----KKL-IIIDALMKEKEDQW--SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYL 150 (235)
T ss_dssp --GBT----TTE-EEEECCC----CTT--BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHH
T ss_pred --Hhh----CCE-EEEeccccccCcee--eecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHH
Confidence 000 000 00000000000000 012359999999888888888999 99999999888 998888888877
Q ss_pred Hhhc-cCCCEEEEEcCCc--------chhhh-cCEEEEEeCCE
Q 001055 332 IRGE-LSGKTRVLVTNQL--------HFLSQ-VDRIILVHEGM 364 (1171)
Q Consensus 332 ~~~~-~~~~tvi~vtH~~--------~~l~~-~d~i~~l~~G~ 364 (1171)
.+.. ..|.|+|+++|+. ..+.. ||+|++|++..
T Consensus 151 ~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 151 KRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp HHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred HHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 6653 3589999999998 34554 79999998653
No 200
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.50 E-value=2.8e-15 Score=175.75 Aligned_cols=156 Identities=14% Similarity=0.130 Sum_probs=97.6
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCC--cc------ceecCcEEEEe
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD--AS------AVIRGTVAYVP 233 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g--~~------~~~~~~i~~v~ 233 (1171)
.|.++|++++|+ ++++++|+||+| +|+|+||||||||+++|+|...|..| +. ......+++++
T Consensus 11 ~l~~~~l~~~y~---~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~ 81 (418)
T 2qag_C 11 YVGFANLPNQVY---RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLI 81 (418)
T ss_dssp ----CCCCCCTT---TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC-
T ss_pred cEEEEecceeEC---CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEE
Confidence 588999999996 357999999998 99999999999999999999875433 11 11123489999
Q ss_pred cCCCCC-cccHHHHHhcCCCCCHH-HHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCC---
Q 001055 234 QVSWIF-NATVRDNILFGSAFEPA-RYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD--- 308 (1171)
Q Consensus 234 Q~~~l~-~~Tv~eni~~g~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~--- 308 (1171)
|++.++ ..||.||+.++...+.. .+..+. +.++ ..++.+++||++|||+++.+|+
T Consensus 82 q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~------~~i~--------------~~~~~~l~qr~~IaRal~~d~~~~v 141 (418)
T 2qag_C 82 KEGGVQLLLTIVDTPGFGDAVDNSNCWQPVI------DYID--------------SKFEDYLNAESRVNRRQMPDNRVQC 141 (418)
T ss_dssp -----CEEEEEEECC-----------CHHHH------HHHH--------------HHHHHHTTTSCC-CCCCCCCC-CCE
T ss_pred ecCCcccceeeeechhhhhhccchhhHHHHH------HHHH--------------HHHHHHHHHHHHHHHHhccCCCeeE
Confidence 988775 78999999887532211 111111 1111 1466778889999999999999
Q ss_pred EEEEeCcC-CCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchh
Q 001055 309 VFIFDDPL-SALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFL 351 (1171)
Q Consensus 309 vllLDEpt-s~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l 351 (1171)
++++|||| ++||+....++ +.+. .+.++|+|.|..+.+
T Consensus 142 lL~ldePt~~~L~~~d~~~l-k~L~----~~v~iIlVinK~Dll 180 (418)
T 2qag_C 142 CLYFIAPSGHGLKPLDIEFM-KRLH----EKVNIIPLIAKADTL 180 (418)
T ss_dssp EEEECCC-CCSCCHHHHHHH-HHHT----TTSEEEEEEESTTSS
T ss_pred EEEEecCcccCCCHHHHHHH-HHHh----ccCcEEEEEEcccCc
Confidence 99999999 69999875444 3332 357888888765543
No 201
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.49 E-value=5.9e-15 Score=172.01 Aligned_cols=178 Identities=15% Similarity=0.177 Sum_probs=113.4
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCE--EEEEcCCCccHHHHHHHHhcCCC---CCCC-ccceecCcEEEEecC
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSL--VAIVGGTGEGKTSLISAMLGELP---PVSD-ASAVIRGTVAYVPQV 235 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~--v~lvG~nGsGKSTLl~~l~G~~~---~~~g-~~~~~~~~i~~v~Q~ 235 (1171)
.+++++ ++.|++ .+ |+++||++++|++ ++|+||||||||||+++|+|..- +... .....+..++|++|+
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~ 90 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQE 90 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeec
Confidence 356666 778853 45 9999999999999 99999999999999999999841 1100 111123369999999
Q ss_pred CCCC-cccHHHHHhcCCCCCHHH-HH-----------HHHHHc-CchHHHhcCCCCC----ccccCCCCCccChHHHHHH
Q 001055 236 SWIF-NATVRDNILFGSAFEPAR-YE-----------KAIDVT-SLQHDLDLLPGGD----VTEIGERGVNISGGQKQRV 297 (1171)
Q Consensus 236 ~~l~-~~Tv~eni~~g~~~~~~~-~~-----------~~~~~~-~l~~~~~~~~~~~----~~~i~~~g~~LSGGqrqRv 297 (1171)
+.++ ..||.||+.+|...+... +. +.++.. +..+.+...++.. .-.+-+.+..|+-.. +
T Consensus 91 ~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---i 167 (427)
T 2qag_B 91 SNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---L 167 (427)
T ss_dssp --CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---H
T ss_pred CccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---H
Confidence 9876 789999999986544211 11 111111 1110000111111 111234445677776 8
Q ss_pred HHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHh-hccCCCEEEEEcCC
Q 001055 298 SMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR-GELSGKTRVLVTNQ 347 (1171)
Q Consensus 298 ~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~-~~~~~~tvi~vtH~ 347 (1171)
.++++|..+++|+++|+|+..|.+.....+++.+.+ ....|.+++.++.+
T Consensus 168 eilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 168 VTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 999999999999999999999999988888887765 55568888888853
No 202
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.49 E-value=1.7e-15 Score=174.58 Aligned_cols=157 Identities=17% Similarity=0.120 Sum_probs=97.1
Q ss_pred Cceeee-eEEecCCCEEEEEcCCCccHHHHHHHHhcCC--CCCCC---cc-cee-------cCcEEEEecCCCCCcccHH
Q 001055 179 PTLLNI-NLDIPVGSLVAIVGGTGEGKTSLISAMLGEL--PPVSD---AS-AVI-------RGTVAYVPQVSWIFNATVR 244 (1171)
Q Consensus 179 ~~l~~i-sl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~--~~~~g---~~-~~~-------~~~i~~v~Q~~~l~~~Tv~ 244 (1171)
+.|+.+ ++.+++|++++|+||||||||||++.++|.. +|+.| +. ..+ +.++++++|.+.++..++.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~ 197 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVL 197 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHG
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHh
Confidence 457765 7899999999999999999999999999998 66664 21 111 1123444444443333444
Q ss_pred HHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhc-------cCCCEEEEeCcCC
Q 001055 245 DNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY-------SNSDVFIFDDPLS 317 (1171)
Q Consensus 245 eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~-------~~~~vllLDEpts 317 (1171)
+||.+.... -|++|+|++.++++++ .+|+++|+||||+
T Consensus 198 ~ni~~~~~~-----------------------------------~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 198 KHIYVARAF-----------------------------------NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp GGEEEEECC-----------------------------------SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred hCEEEEecC-----------------------------------ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 444432111 1467788888888887 6899999999999
Q ss_pred CCCHHH------------HHHHHHHHHhhc-cCCCEEEEEcCCcchhhh-cCEEEEEeCCEEEEecC
Q 001055 318 ALDAHV------------GRQVFDRCIRGE-LSGKTRVLVTNQLHFLSQ-VDRIILVHEGMVKEEGT 370 (1171)
Q Consensus 318 ~LD~~~------------~~~l~~~l~~~~-~~~~tvi~vtH~~~~l~~-~d~i~~l~~G~i~~~g~ 370 (1171)
++|+.. .+.+...+.+.. ..+.|+|+++|.....+. .+.......|++.+.+.
T Consensus 243 ~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 243 HFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp THHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTC
T ss_pred hhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecC
Confidence 999862 244444444433 348999999998765442 23344555566554433
No 203
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.48 E-value=5.4e-16 Score=165.48 Aligned_cols=162 Identities=12% Similarity=0.117 Sum_probs=91.0
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCC-----CCCCCccceec-----CcEEE
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL-----PPVSDASAVIR-----GTVAY 231 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~-----~~~~g~~~~~~-----~~i~~ 231 (1171)
.|+++|++|.|+ .+++++ |.+++|.+++|+|+||||||||++.|+|.. .|+.|...... +.+-+
T Consensus 3 ~l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l 76 (210)
T 1pui_A 3 NLNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRL 76 (210)
T ss_dssp --------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEE
T ss_pred chhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEE
Confidence 378999999995 257887 999999999999999999999999999988 67666543211 11111
Q ss_pred EecCCCC------------CcccHHHHHh---------c----CCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCC
Q 001055 232 VPQVSWI------------FNATVRDNIL---------F----GSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERG 286 (1171)
Q Consensus 232 v~Q~~~l------------~~~Tv~eni~---------~----g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g 286 (1171)
+ ..|-. +...+..-+. + ....... ..+..++ +... +...-.++...
T Consensus 77 ~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~------~~~~-~~~~~~v~nK~ 147 (210)
T 1pui_A 77 V-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDL-DQQMIEW------AVDS-NIAVLVLLTKA 147 (210)
T ss_dssp E-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHH------HHHT-TCCEEEEEECG
T ss_pred E-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchh-HHHHHHH------HHHc-CCCeEEEEecc
Confidence 1 11110 0000111110 0 0001111 1111111 1111 11111245666
Q ss_pred CccChHHHHH-HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCC
Q 001055 287 VNISGGQKQR-VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 338 (1171)
Q Consensus 287 ~~LSGGqrqR-v~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~ 338 (1171)
..+|+||||| +..+++++.+|+++++|||||++|+.....+++.+.+...++
T Consensus 148 D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~ 200 (210)
T 1pui_A 148 DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEM 200 (210)
T ss_dssp GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC--
T ss_pred cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhc
Confidence 7899999999 899999999999999999999999999999998876654334
No 204
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.45 E-value=1.2e-15 Score=188.40 Aligned_cols=176 Identities=21% Similarity=0.268 Sum_probs=105.1
Q ss_pred cEEEEeeEEEcCCCCCCCceeee----------eEEecCCCEEEEEcCCCccHHHHHHHHhcCCCC-CCCccce------
Q 001055 162 AISIRNGYFSWDSKAERPTLLNI----------NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP-VSDASAV------ 224 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~i----------sl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~-~~g~~~~------ 224 (1171)
.+.++|+++.|+.. .+++|+.+ +++++. +||+||||||||||+++|+|+..| ++|.+..
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 58899999999632 24455544 366665 999999999999999999999988 6765421
Q ss_pred ---------ecCcEEEEecCCCCC-cccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHH
Q 001055 225 ---------IRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQK 294 (1171)
Q Consensus 225 ---------~~~~i~~v~Q~~~l~-~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqr 294 (1171)
+++.++|++|++.++ ..||++||.++. ... .... ..+| +
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~--------~~~---------~~~~-----------~~~s---~ 134 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ--------NAI---------AGEG-----------MGIS---H 134 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH--------HHH---------HCSS-----------SCCC---S
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH--------HHh---------cCCc-----------cccc---h
Confidence 234689999999886 579999996420 000 0000 0111 1
Q ss_pred HHHHHHHHhccCCCEEEEeCc------CCCCCHHHHHHHHHHHHhhcc--CCCEEEEEcCCcchh--------hh-----
Q 001055 295 QRVSMARAVYSNSDVFIFDDP------LSALDAHVGRQVFDRCIRGEL--SGKTRVLVTNQLHFL--------SQ----- 353 (1171)
Q Consensus 295 qRv~LAraL~~~~~vllLDEp------ts~LD~~~~~~l~~~l~~~~~--~~~tvi~vtH~~~~l--------~~----- 353 (1171)
+++.++.+....|+++++||| |++||+...+.+.+.+..... .+.+++++||+.+.. +.
T Consensus 135 ~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g 214 (608)
T 3szr_A 135 ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEG 214 (608)
T ss_dssp CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSC
T ss_pred HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcC
Confidence 233344444568999999999 999999999999887666432 367788999998743 12
Q ss_pred cCEEEEEeCCEEEEecChh
Q 001055 354 VDRIILVHEGMVKEEGTFE 372 (1171)
Q Consensus 354 ~d~i~~l~~G~i~~~g~~~ 372 (1171)
...|.++.++.++..|+.+
T Consensus 215 ~rtI~VlTK~Dlv~~g~~~ 233 (608)
T 3szr_A 215 DRTIGILTKPDLVDKGTED 233 (608)
T ss_dssp CSEEEEEECGGGSSSSSTT
T ss_pred CceEEEecchhhcCcccHH
Confidence 2557888887766665543
No 205
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.45 E-value=6.5e-14 Score=156.74 Aligned_cols=151 Identities=13% Similarity=0.093 Sum_probs=95.1
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhcc-CCCCC
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLD-PFSEH 888 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~-~~~~~ 888 (1171)
.+++|++++|+||||||||||++.+++.+. .|.+. .|.+... +..+.|++.+... ..+...+. .....
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~~~ 94 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGAHL 94 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHTTS
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHhhc
Confidence 478999999999999999999999998664 56663 3443211 2346666655322 11111111 00011
Q ss_pred CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCc--CCCHHHH---HHHH
Q 001055 889 SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA--AVDVRTD---ALIQ 963 (1171)
Q Consensus 889 ~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs--~LD~~t~---~~i~ 963 (1171)
......+. ++.+ ++....+.....||+||+|++ ++++++|+++||||||+ ++|.... ..+.
T Consensus 95 ~~~~~~~~---------~~~l--~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~ 160 (279)
T 1nlf_A 95 SAEERQAV---------ADGL--LIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVI 160 (279)
T ss_dssp CHHHHHHH---------HHHE--EECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHH
T ss_pred Chhhhhhc---------cCce--EEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHH
Confidence 12222222 2222 223333456678999998765 68889999999999999 9997544 6677
Q ss_pred HHHHHHc--CCcEEEEEecChhhh
Q 001055 964 KTIREEF--KSCTMLIIAHRLNTI 985 (1171)
Q Consensus 964 ~~l~~~~--~~~tvi~vtH~~~~~ 985 (1171)
+.|.++. .++|||+++|+....
T Consensus 161 ~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 161 GRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHcCCEEEEEecCCCcc
Confidence 7777764 389999999998654
No 206
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.44 E-value=1.9e-13 Score=140.87 Aligned_cols=79 Identities=22% Similarity=0.291 Sum_probs=67.7
Q ss_pred CCccChHHHHHHHHHHHhc----cCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEE-
Q 001055 286 GVNISGGQKQRVSMARAVY----SNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILV- 360 (1171)
Q Consensus 286 g~~LSGGqrqRv~LAraL~----~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l- 360 (1171)
...||||||||++|||+|+ .+|+++||||||++||+..++.+.+.+.+.. ++.++|+|||+...+..||+++.+
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~-~~~~~ivith~~~~~~~ad~i~~v~ 140 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESS-KESQFIVITLRDVMMANADKIIGVS 140 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHHHHTTCSEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhc-cCCEEEEEEecHHHHHhCCEEEEEE
Confidence 4689999999999999996 5579999999999999999999998765543 457899999998888889999865
Q ss_pred -eCCEE
Q 001055 361 -HEGMV 365 (1171)
Q Consensus 361 -~~G~i 365 (1171)
.+|..
T Consensus 141 ~~~g~s 146 (173)
T 3kta_B 141 MRDGVS 146 (173)
T ss_dssp EETTEE
T ss_pred ecCCEE
Confidence 46653
No 207
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.43 E-value=2.4e-13 Score=145.92 Aligned_cols=149 Identities=18% Similarity=0.119 Sum_probs=96.4
Q ss_pred CcceeeeE-EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHh
Q 001055 802 PVLHGLSF-TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRF 880 (1171)
Q Consensus 802 ~~l~~vs~-~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~ 880 (1171)
+.|+++.. .+++|++++|+||||||||||++.+++ .+..+.++++..+ ..+...+++
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~~~------------------ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERLVQ------------------ 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHHHH------------------
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHHHH------------------
Confidence 45677665 789999999999999999999999999 4444445544321 111111111
Q ss_pred hccCCCCCCHHHHHHHHHHhcH--HHHHHHccCCcchhhhcCCCCCChh--HHHHHHHHHHhccC-CCEEEEecCCcCCC
Q 001055 881 NLDPFSEHSDADLWEALERAHL--KDAIRRNSLGLDAQVSEAGENFSVG--QRQLLSLSRALLRR-SKILVLDEATAAVD 955 (1171)
Q Consensus 881 nl~~~~~~~~~~i~~~l~~~~~--~~~i~~lp~gl~~~~~~~~~~LSgG--qkqrl~lArall~~-p~iLlLDEpTs~LD 955 (1171)
.++..++ .++.+.+. ...+|++ ++|+++.+|+++++ |+++|+||||+.+|
T Consensus 65 ---------------~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~ 119 (220)
T 2cvh_A 65 ---------------MAETRGLNPEEALSRFI----------LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYR 119 (220)
T ss_dssp ---------------HHHTTTCCHHHHHHHEE----------EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTT
T ss_pred ---------------HHHhcCCChHHHhhcEE----------EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhh
Confidence 1110000 11111111 1134455 36789999999986 99999999999999
Q ss_pred HHHH--------HHHHHHHHHHcC--CcEEEEEecChh-------------hhhh-cCEEEEEeCc
Q 001055 956 VRTD--------ALIQKTIREEFK--SCTMLIIAHRLN-------------TIID-CDRILLLDSG 997 (1171)
Q Consensus 956 ~~t~--------~~i~~~l~~~~~--~~tvi~vtH~~~-------------~~~~-~d~i~vl~~G 997 (1171)
+... ..+.+.|+++.+ ++|+|+++|... .+.. ||+|++|+..
T Consensus 120 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 120 AEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 7432 334444655443 789999999876 3444 9999999754
No 208
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.42 E-value=1e-14 Score=166.17 Aligned_cols=154 Identities=18% Similarity=0.179 Sum_probs=108.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCC--------CCCCceEEECCEecCCCC---------------hHHHhhheEEE---c
Q 001055 815 DKVGIVGRTGAGKSSMLNTLFRIV--------ELERGRILIDGFDIAKFG---------------LMDLRKILGII---P 868 (1171)
Q Consensus 815 e~v~ivG~nGsGKSTLl~~l~g~~--------~p~~G~I~i~g~~i~~~~---------------~~~~r~~i~~v---~ 868 (1171)
++++|+|+||||||||++.|+|.. .|+.|+|.+||.++...+ ..++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999997 889999999999987653 34577789888 7
Q ss_pred CCccc-ccccHHhhccCCCCCCHHHHHHHH-------HHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhcc
Q 001055 869 QSPVL-FSGTVRFNLDPFSEHSDADLWEAL-------ERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLR 940 (1171)
Q Consensus 869 Q~~~l-f~~tv~~nl~~~~~~~~~~i~~~l-------~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~ 940 (1171)
|++.+ |+.++.||..... ...+.+.+ ....+...+... +........ .+||+||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~---p~~~~~~~~~~~~~~~~~~l~~~l~~v--d~~~~~~~~-~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMAD---PGPIIQTFFSHEVLCQRYLLDGVIALV--DAVHADEQM-NQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCC---HHHHHHHHHHSHHHHHHEEEEEEEEEE--ETTTHHHHH-HHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCC---HHHHHHHHhcCccccCeEEECCEEEEE--EHHHHHHHH-hhchHHHHHHHhCCEEEEE
Confidence 88764 5679999986542 22222221 000010000000 111111111 1589999999999999999
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhh
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI 985 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~ 985 (1171)
+|+++ ||| +.+.+.|++..++.||+++||+...+
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~~~ 192 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARINARAPVYTVTHGDIDL 192 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCCCG
T ss_pred CcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCCCH
Confidence 99987 998 67788888877789999999974433
No 209
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.42 E-value=2.3e-15 Score=158.24 Aligned_cols=139 Identities=14% Similarity=0.058 Sum_probs=89.4
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCCCCC
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHS 889 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~ 889 (1171)
.+++|++++|+||||||||||+++|+|. |+.|.|.++|.++..... .++.++|++|++. ...|+.+|+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~---- 75 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADV---- 75 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHH----
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHH----
Confidence 4789999999999999999999999998 788999999876532211 1234678888754 334677666321
Q ss_pred HHHHHHHHHHhcHHHHHHHc--cCCcchhh--hcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHH
Q 001055 890 DADLWEALERAHLKDAIRRN--SLGLDAQV--SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKT 965 (1171)
Q Consensus 890 ~~~i~~~l~~~~~~~~i~~l--p~gl~~~~--~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~ 965 (1171)
.. .....+....++.. +.+++... +.....+|+|++|+++++|++.++|+++ +|+...+.+++.
T Consensus 76 -~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~ 143 (191)
T 1zp6_A 76 -AG---RYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQ 143 (191)
T ss_dssp -HH---HHHHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHH
T ss_pred -HH---HHhccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHH
Confidence 00 00000000000000 01111111 2233569999999999999999999876 588877777777
Q ss_pred HHHH
Q 001055 966 IREE 969 (1171)
Q Consensus 966 l~~~ 969 (1171)
+..+
T Consensus 144 ~~~l 147 (191)
T 1zp6_A 144 FADL 147 (191)
T ss_dssp TTCC
T ss_pred Hhcc
Confidence 6543
No 210
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.42 E-value=1.8e-13 Score=153.13 Aligned_cols=147 Identities=16% Similarity=0.209 Sum_probs=93.7
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccc-----eecCcEEEEecCCCCCcccHHHHHh-cCCCCCHHHHHH
Q 001055 187 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASA-----VIRGTVAYVPQVSWIFNATVRDNIL-FGSAFEPARYEK 260 (1171)
Q Consensus 187 ~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~-----~~~~~i~~v~Q~~~l~~~Tv~eni~-~g~~~~~~~~~~ 260 (1171)
.+++|++++|+||||||||||++.+++.... |... ..++.+.|+..+... ..+.+.+. ++..........
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~--g~~~~g~~~~~~~~v~~~~~e~~~--~~~~~r~~~~g~~~~~~~~~~ 101 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIAG--GPDLLEVGELPTGPVIYLPAEDPP--TAIHHRLHALGAHLSAEERQA 101 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHHT--CCCTTCCCCCCCCCEEEEESSSCH--HHHHHHHHHHHTTSCHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHhc--CCCcCCCccCCCccEEEEECCCCH--HHHHHHHHHHHhhcChhhhhh
Confidence 5889999999999999999999999986542 3211 113457887766432 12222221 222233333223
Q ss_pred HHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCC--CCCHHHH---HHHHHHHHhhc
Q 001055 261 AIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS--ALDAHVG---RQVFDRCIRGE 335 (1171)
Q Consensus 261 ~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts--~LD~~~~---~~l~~~l~~~~ 335 (1171)
.++...+. + ..+.....||+||++++ ++++.+|+++++||||+ ++|+... ..+.+.+....
T Consensus 102 ~~~~l~l~------~-----~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~ 167 (279)
T 1nlf_A 102 VADGLLIQ------P-----LIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIA 167 (279)
T ss_dssp HHHHEEEC------C-----CTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHH
T ss_pred ccCceEEe------e-----cCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHH
Confidence 33332221 1 12344568999998765 68888999999999999 9998433 66666665553
Q ss_pred -cCCCEEEEEcCCcchh
Q 001055 336 -LSGKTRVLVTNQLHFL 351 (1171)
Q Consensus 336 -~~~~tvi~vtH~~~~l 351 (1171)
..|+|+|+++|+....
T Consensus 168 ~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 168 ADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHCCEEEEEEEC----
T ss_pred HHcCCEEEEEecCCCcc
Confidence 3489999999998654
No 211
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.41 E-value=2e-16 Score=183.91 Aligned_cols=168 Identities=17% Similarity=0.149 Sum_probs=125.0
Q ss_pred CceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCC-CCccce--------ecCcEEEEec-----CCCCCcccHH
Q 001055 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV-SDASAV--------IRGTVAYVPQ-----VSWIFNATVR 244 (1171)
Q Consensus 179 ~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~-~g~~~~--------~~~~i~~v~Q-----~~~l~~~Tv~ 244 (1171)
++|++++ +++|++++|+||||||||||+++|+|+++|+ +|.+.. .+..++|++| ++..|..+++
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~ 203 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALR 203 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHH
Confidence 3566665 8999999999999999999999999999887 665422 3456899999 7777899999
Q ss_pred HHHhcCCCC-------CHHHHHHHHHHcCch-----------------HHHhc------------CCCCCccccCCCCCc
Q 001055 245 DNILFGSAF-------EPARYEKAIDVTSLQ-----------------HDLDL------------LPGGDVTEIGERGVN 288 (1171)
Q Consensus 245 eni~~g~~~-------~~~~~~~~~~~~~l~-----------------~~~~~------------~~~~~~~~i~~~g~~ 288 (1171)
+|+....+. +.+.+..+++.+... +.+.. ++.+..+.+++++..
T Consensus 204 ~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~qrl~~ 283 (372)
T 2ewv_A 204 AALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQRLLP 283 (372)
T ss_dssp HHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEEEEEE
T ss_pred HHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEEEeEe
Confidence 999876433 566665555544321 11111 233455667777778
Q ss_pred cChHHHHHHHHHHHhccCCCE--EEEeCcCCCCCHHH---H-----HHHHHHHHhhccCCCEEEEEcCCcch
Q 001055 289 ISGGQKQRVSMARAVYSNSDV--FIFDDPLSALDAHV---G-----RQVFDRCIRGELSGKTRVLVTNQLHF 350 (1171)
Q Consensus 289 LSGGqrqRv~LAraL~~~~~v--llLDEpts~LD~~~---~-----~~l~~~l~~~~~~~~tvi~vtH~~~~ 350 (1171)
+||| ||+++|++++.+|++ +|+||+|+.||... . +.+.+..+....+|+|.+.+.|++..
T Consensus 284 ~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 284 KIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp CSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred cCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 8999 889999999999999 99999999999651 1 23444555556678999989998763
No 212
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.41 E-value=3.4e-16 Score=182.26 Aligned_cols=141 Identities=16% Similarity=0.037 Sum_probs=93.0
Q ss_pred ceeeeeEEecC--CCEEEEEcCCCccHHHHHHHHhcCCCCCC----Ccccee---c-----------CcEEEEecCCCCC
Q 001055 180 TLLNINLDIPV--GSLVAIVGGTGEGKTSLISAMLGELPPVS----DASAVI---R-----------GTVAYVPQVSWIF 239 (1171)
Q Consensus 180 ~l~~isl~i~~--Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~----g~~~~~---~-----------~~i~~v~Q~~~l~ 239 (1171)
..+.|+++|++ |++++|+|+||||||||+++|+|.++|++ |.+... . ..|++++|++.++
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~~~I~~~~q~~~~~ 236 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQRYIDY 236 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTHHHHHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHH
Confidence 35679999999 99999999999999999999999999987 543220 0 1255555555555
Q ss_pred cccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhc-cCCCEEEEeC---c
Q 001055 240 NATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY-SNSDVFIFDD---P 315 (1171)
Q Consensus 240 ~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~-~~~~vllLDE---p 315 (1171)
..|++|||.++....... ....+|+|++||..+++++. .+|++++||| |
T Consensus 237 ~~t~~~nl~~~~~~~~~~---------------------------~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p 289 (365)
T 1lw7_A 237 AVRHSHKIAFIDTDFITT---------------------------QAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTE 289 (365)
T ss_dssp HHHHCSSEEEESSCHHHH---------------------------HHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC
T ss_pred HHhccCCEEEEeCCchHH---------------------------HHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCC
Confidence 566666665542110000 01135566677777777764 5888888888 5
Q ss_pred C------CCCCHHHHHHHHHHHHhhc-cCCCEEEEEcCC
Q 001055 316 L------SALDAHVGRQVFDRCIRGE-LSGKTRVLVTNQ 347 (1171)
Q Consensus 316 t------s~LD~~~~~~l~~~l~~~~-~~~~tvi~vtH~ 347 (1171)
+ .++|+..+..+.+.+.+.. ..+.++|+++|.
T Consensus 290 ~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~ 328 (365)
T 1lw7_A 290 WVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP 328 (365)
T ss_dssp -----------CCSHHHHHHHHHHHHHGGGCCCEEEECS
T ss_pred cccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 5 5788888888877664432 236788888875
No 213
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.41 E-value=2.7e-13 Score=147.95 Aligned_cols=146 Identities=18% Similarity=0.185 Sum_probs=87.8
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhc--CCCC-----CCceEEECCEecCC-CChHHHhhheEEEcCCcccccccHHhh
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFR--IVEL-----ERGRILIDGFDIAK-FGLMDLRKILGIIPQSPVLFSGTVRFN 881 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g--~~~p-----~~G~I~i~g~~i~~-~~~~~~r~~i~~v~Q~~~lf~~tv~~n 881 (1171)
.+++|++++|+||||||||||++.|++ ..+| ..|.+++++.+... .....+++.+++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 589999999999999999999999999 5655 57889998765211 0112234445655443 3444
Q ss_pred ccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc--cCCCEEEEecCCcCCCHH--
Q 001055 882 LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL--RRSKILVLDEATAAVDVR-- 957 (1171)
Q Consensus 882 l~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall--~~p~iLlLDEpTs~LD~~-- 957 (1171)
+......+.++..+. +.-++.++ .+|+++++||||+.+|+.
T Consensus 93 ~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~lliiD~~~~~~~~~~~ 137 (243)
T 1n0w_A 93 VAYARAFNTDHQTQL-----------------------------------LYQASAMMVESRYALLIVDSATALYRTDYS 137 (243)
T ss_dssp EEEEECCSHHHHHHH-----------------------------------HHHHHHHHHHSCEEEEEEETSSGGGC----
T ss_pred eEEEecCCHHHHHHH-----------------------------------HHHHHHHHhcCCceEEEEeCchHHHHHHhc
Confidence 433222222221111 11111222 589999999999999985
Q ss_pred -----H-----HHHHHHHHHHHc--CCcEEEEEecChhhh-------------------h-hcCEEEEEeCc
Q 001055 958 -----T-----DALIQKTIREEF--KSCTMLIIAHRLNTI-------------------I-DCDRILLLDSG 997 (1171)
Q Consensus 958 -----t-----~~~i~~~l~~~~--~~~tvi~vtH~~~~~-------------------~-~~d~i~vl~~G 997 (1171)
+ ...+...|.+.. .++|||+++|..... . .||++++|+.|
T Consensus 138 ~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 138 GRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 3 223444444433 379999999965432 2 38999999865
No 214
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.40 E-value=5.7e-14 Score=158.34 Aligned_cols=138 Identities=17% Similarity=0.130 Sum_probs=90.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee------------------cCcEEEEecCCCCC-cccHHHHHhcC
Q 001055 190 VGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------------RGTVAYVPQVSWIF-NATVRDNILFG 250 (1171)
Q Consensus 190 ~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~------------------~~~i~~v~Q~~~l~-~~Tv~eni~~g 250 (1171)
+|++++|+||||||||||+++|+|.++|++|.+... +..++|++|++.++ ..|+++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999999999987654221 12489999998775 56899998643
Q ss_pred CCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCC--EEEEeCcCCCCCHHHHHHHH
Q 001055 251 SAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSD--VFIFDDPLSALDAHVGRQVF 328 (1171)
Q Consensus 251 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~--vllLDEpts~LD~~~~~~l~ 328 (1171)
. ...+.. ..++ .++... .....++..++||++||||+..+|+ ++.|| |+++.+. .
T Consensus 181 ~----------~~~~d~-~llD-t~G~~~----~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~------~ 237 (304)
T 1rj9_A 181 K----------ARGYDL-LFVD-TAGRLH----TKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNG------L 237 (304)
T ss_dssp H----------HHTCSE-EEEC-CCCCCT----TCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHH------H
T ss_pred H----------hCCCCE-EEec-CCCCCC----chHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHH------H
Confidence 1 000100 0011 111110 1112356667999999999999999 55666 5555443 3
Q ss_pred HHHHhhcc-CCCEEEEEcCCcch
Q 001055 329 DRCIRGEL-SGKTRVLVTNQLHF 350 (1171)
Q Consensus 329 ~~l~~~~~-~~~tvi~vtH~~~~ 350 (1171)
+.+..... .+.|+|++||+...
T Consensus 238 ~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 238 EQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHHHHHHCCSEEEEECTTSS
T ss_pred HHHHHHHHHcCCcEEEEECCccc
Confidence 32322222 36899999998543
No 215
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.37 E-value=4.7e-15 Score=166.17 Aligned_cols=128 Identities=11% Similarity=0.037 Sum_probs=90.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCCC----C
Q 001055 813 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE----H 888 (1171)
Q Consensus 813 ~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~----~ 888 (1171)
++.++||+|++|||||||++.|.+++.+. |. -++.+.+|+||+++|+.++++|+.+... .
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g~---------------~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-YG---------------GEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-HG---------------GGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-CC---------------CCceEEEeccccccCChHHHHHHhccccccchh
Confidence 47799999999999999999999999874 20 1345666699999999999988742100 0
Q ss_pred CHHHHHHHHHHhcHHHHHHHccCCcchh------hhcCCCCCChhHHHHHHHH--HHhccCCCEEEEecCCcCCCHHH
Q 001055 889 SDADLWEALERAHLKDAIRRNSLGLDAQ------VSEAGENFSVGQRQLLSLS--RALLRRSKILVLDEATAAVDVRT 958 (1171)
Q Consensus 889 ~~~~i~~~l~~~~~~~~i~~lp~gl~~~------~~~~~~~LSgGqkqrl~lA--rall~~p~iLlLDEpTs~LD~~t 958 (1171)
.....-++.....+.+++..++.|++|. +...+.++||||+||+++| +++ +|+|||+||||+++|+..
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 0000001112345677888889997653 3345678999999999998 555 899999999999999864
No 216
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.37 E-value=3.8e-15 Score=166.93 Aligned_cols=128 Identities=12% Similarity=0.122 Sum_probs=88.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCH----HHHHHHHHHc
Q 001055 190 VGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEP----ARYEKAIDVT 265 (1171)
Q Consensus 190 ~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~----~~~~~~~~~~ 265 (1171)
++.+++|+|++|||||||.+.|.+.+++. |.. +..+.+|+|++.+++.++++|+.++.+... .....+.+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g~~---~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~ 105 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-YGG---EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMK 105 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-HGG---GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-CCC---CceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHH
Confidence 45799999999999999999999998763 211 334666699999999999999976421000 0000111122
Q ss_pred CchHHHhcCCCCCcc------ccCCCCCccChHHHHHHHHH--HHhccCCCEEEEeCcCCCCCHHH
Q 001055 266 SLQHDLDLLPGGDVT------EIGERGVNISGGQKQRVSMA--RAVYSNSDVFIFDDPLSALDAHV 323 (1171)
Q Consensus 266 ~l~~~~~~~~~~~~~------~i~~~g~~LSGGqrqRv~LA--raL~~~~~vllLDEpts~LD~~~ 323 (1171)
.+.+.+..++.|.+| .+...+..+||||+||+++| +++ +|+|+|+||||+++|+..
T Consensus 106 ~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 106 LLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp HHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred HHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 334455555665332 34555679999999999998 555 999999999999999863
No 217
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.36 E-value=4.7e-13 Score=162.79 Aligned_cols=78 Identities=17% Similarity=0.206 Sum_probs=70.7
Q ss_pred CCcc-ChHHHHHHHHHHHhccCC--CEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeC
Q 001055 286 GVNI-SGGQKQRVSMARAVYSNS--DVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHE 362 (1171)
Q Consensus 286 g~~L-SGGqrqRv~LAraL~~~~--~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~ 362 (1171)
...| ||||||||+|||||+.+| ++|||||||+|||+.+...+.+.+..... |+|||+|||+++.+..||++++|++
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~~~~~~d~~~~~~~ 472 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQIAARAHHHYKVEK 472 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHHHHHHSSEEEEEEC
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHhCCEEEEEec
Confidence 3567 999999999999999999 99999999999999999999998776654 8999999999999888999999976
Q ss_pred CE
Q 001055 363 GM 364 (1171)
Q Consensus 363 G~ 364 (1171)
+.
T Consensus 473 ~~ 474 (517)
T 4ad8_A 473 QV 474 (517)
T ss_dssp CE
T ss_pred cc
Confidence 53
No 218
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.36 E-value=1.1e-15 Score=160.69 Aligned_cols=170 Identities=17% Similarity=0.062 Sum_probs=105.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccc-cccHHhhccCCCCCCHHH
Q 001055 814 SDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF-SGTVRFNLDPFSEHSDAD 892 (1171)
Q Consensus 814 Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~tv~~nl~~~~~~~~~~ 892 (1171)
|++++|+||||||||||+++|++ |.+|.+.++|.++... ..+++++|....+ ..++.+|+...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~------- 65 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDL------- 65 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHH-------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHH-------
Confidence 68999999999999999999987 6789999998655321 2356777765333 23565555321
Q ss_pred HHHHHHHhcHHHHHHHccCCcchhhhcCCCCC--ChhHHHHHHHHH------HhccCCCEEEEecCCcCCCHHHHHHHHH
Q 001055 893 LWEALERAHLKDAIRRNSLGLDAQVSEAGENF--SVGQRQLLSLSR------ALLRRSKILVLDEATAAVDVRTDALIQK 964 (1171)
Q Consensus 893 i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~L--SgGqkqrl~lAr------all~~p~iLlLDEpTs~LD~~t~~~i~~ 964 (1171)
....+. .+....++.. .+ ....+....+ |+|++|++.++. +++++|+...+|+ ++|+...+. ++
T Consensus 66 ~~~~~~-~~~~~ild~~-~~--~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~ 137 (189)
T 2bdt_A 66 TVNFLL-AQNDVVLDYI-AF--PDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VE 137 (189)
T ss_dssp HHHHHH-TTCEEEEESC-CC--HHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HH
T ss_pred HHHHHh-cCCcEEEeec-cC--HHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HH
Confidence 000000 0000000000 00 0000000124 888888888887 8888888888884 899988888 88
Q ss_pred HHHHHcC-CcEEEEEecC-hhhhhh-cCEEEEEeCcEEEEecChhHHh
Q 001055 965 TIREEFK-SCTMLIIAHR-LNTIID-CDRILLLDSGRVLEYDTPEELL 1009 (1171)
Q Consensus 965 ~l~~~~~-~~tvi~vtH~-~~~~~~-~d~i~vl~~G~i~~~g~~~el~ 1009 (1171)
.+..... +.++|.+||. +++++. ||+|+ ++|+++..|+++-|-
T Consensus 138 ~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 138 EFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp HHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred HHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 8877643 5799999999 999987 99999 999999999887653
No 219
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.36 E-value=2.9e-15 Score=154.50 Aligned_cols=99 Identities=20% Similarity=0.194 Sum_probs=75.3
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCCCCC---CCccce---------------ec-CcEE----EEecCCCCCcccHHHHHh
Q 001055 192 SLVAIVGGTGEGKTSLISAMLGELPPV---SDASAV---------------IR-GTVA----YVPQVSWIFNATVRDNIL 248 (1171)
Q Consensus 192 e~v~lvG~nGsGKSTLl~~l~G~~~~~---~g~~~~---------------~~-~~i~----~v~Q~~~l~~~Tv~eni~ 248 (1171)
++++|+|+||||||||+++|+|+++|+ .|.+.. ++ ..+| +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 589999999999999999999999886 342211 11 1355 788887766 111
Q ss_pred cCCCCCHHHHHHHHHHcCchHHHhc-CCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEE
Q 001055 249 FGSAFEPARYEKAIDVTSLQHDLDL-LPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVF 310 (1171)
Q Consensus 249 ~g~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vl 310 (1171)
.+.+ . .+++.+.+.. +| +++|.++|+ |||||||||+||||++++|+++
T Consensus 77 ----~~~~-~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 ----VSEE-E-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp ----CCHH-H-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred ----CChh-h-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 1111 1 5678888888 88 899999985 9999999999999999998874
No 220
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.35 E-value=2.2e-15 Score=172.79 Aligned_cols=177 Identities=12% Similarity=0.120 Sum_probs=116.8
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCCh----HHHhh
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL----MDLRK 862 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~----~~~r~ 862 (1171)
++++++++.|+.. .+|+++||++++|++++|+||||||||||+++|+|++.|++|+|.+.|.++..... ...|.
T Consensus 30 ie~~~~~~~~~~~--~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~ 107 (337)
T 2qm8_A 30 AESRRADHRAAVR--DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT 107 (337)
T ss_dssp HTCSSHHHHHHHH--HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG
T ss_pred HeeCCcccccChH--HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh
Confidence 3445677778543 58999999999999999999999999999999999999999999999998854321 23577
Q ss_pred heEEEcCCcccccc----------c---HHhhc--------c------CCCCCCHHHHHHHHHH-------------hcH
Q 001055 863 ILGIIPQSPVLFSG----------T---VRFNL--------D------PFSEHSDADLWEALER-------------AHL 902 (1171)
Q Consensus 863 ~i~~v~Q~~~lf~~----------t---v~~nl--------~------~~~~~~~~~i~~~l~~-------------~~~ 902 (1171)
++++++|++.+|.. | +++.+ + ++-..++..+.+.+.. ..+
T Consensus 108 ~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i 187 (337)
T 2qm8_A 108 RMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGI 187 (337)
T ss_dssp GSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------C
T ss_pred hheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHH
Confidence 89999999987741 1 11110 0 0000011111000000 000
Q ss_pred HHHHHHccCCcc-hhhhc-CCCCCChhHHHHHHHHHHhcc------CCCEEEEecCCcCCCHHHHHHHHHHHHHH
Q 001055 903 KDAIRRNSLGLD-AQVSE-AGENFSVGQRQLLSLSRALLR------RSKILVLDEATAAVDVRTDALIQKTIREE 969 (1171)
Q Consensus 903 ~~~i~~lp~gl~-~~~~~-~~~~LSgGqkqrl~lArall~------~p~iLlLDEpTs~LD~~t~~~i~~~l~~~ 969 (1171)
...+...|.-+- ..++. ....+|+|++|++..|++++. +|+++. ||++|......+++.|.+.
T Consensus 188 ~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 188 KKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp CTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 000111111100 11111 113478999999999999998 688876 9999999999999999874
No 221
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.34 E-value=8.1e-14 Score=149.81 Aligned_cols=135 Identities=17% Similarity=0.191 Sum_probs=89.0
Q ss_pred eEEecCCCEEEEEcCCCccHHHHHHHHhcCCCC--CCCcccee--------cCcEEEEecCCCCCc-ccH----HHHHhc
Q 001055 185 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP--VSDASAVI--------RGTVAYVPQVSWIFN-ATV----RDNILF 249 (1171)
Q Consensus 185 sl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~--~~g~~~~~--------~~~i~~v~Q~~~l~~-~Tv----~eni~~ 249 (1171)
.-..++|++++|+||||||||||+++|+|.++| ..|.+... +..++|++|++.+|. .++ .||+.+
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence 346789999999999999999999999999986 34433221 124889999876653 344 333332
Q ss_pred CCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHH
Q 001055 250 GSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFD 329 (1171)
Q Consensus 250 g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~ 329 (1171)
.. .+.|-.+++ ++.++..++++||| ||+.+.+.+.+
T Consensus 90 ~~------------------------------------~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~ 125 (219)
T 1s96_A 90 FG------------------------------------NYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQ 125 (219)
T ss_dssp TT------------------------------------EEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHH
T ss_pred Hh------------------------------------ccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHH
Confidence 10 011111221 33444557999999 99999999987
Q ss_pred HHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCEEEEecChhHHh
Q 001055 330 RCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGMVKEEGTFEDLS 375 (1171)
Q Consensus 330 ~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~i~~~g~~~~l~ 375 (1171)
.+. ++.|++++||+++.+.. |+ +.+| .++.+++.
T Consensus 126 ~l~----~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~ 159 (219)
T 1s96_A 126 KMP----HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIA 159 (219)
T ss_dssp HCT----TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHH
T ss_pred Hcc----CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHH
Confidence 543 47899999999998865 32 5666 46666654
No 222
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.34 E-value=2.3e-12 Score=138.30 Aligned_cols=152 Identities=13% Similarity=0.081 Sum_probs=97.9
Q ss_pred CceeeeeE-EecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHH
Q 001055 179 PTLLNINL-DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPAR 257 (1171)
Q Consensus 179 ~~l~~isl-~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~ 257 (1171)
+.|+++.. .+++|++++|+||||||||||++.+++ ++ .+.+.|+..+..+....+.+.... ...+.+.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~--------~~~v~~i~~~~~~~~~~~~~~~~~-~~~~~~~ 75 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LS--------GKKVAYVDTEGGFSPERLVQMAET-RGLNPEE 75 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HH--------CSEEEEEESSCCCCHHHHHHHHHT-TTCCHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--Hc--------CCcEEEEECCCCCCHHHHHHHHHh-cCCChHH
Confidence 45777765 799999999999999999999999999 21 134667766553222222222110 0011111
Q ss_pred HHHHHHHcCchHHHhcCCCCCccccCCCCCccChH--HHHHHHHHHHhccC-CCEEEEeCcCCCCCHHH--------HHH
Q 001055 258 YEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG--QKQRVSMARAVYSN-SDVFIFDDPLSALDAHV--------GRQ 326 (1171)
Q Consensus 258 ~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGG--qrqRv~LAraL~~~-~~vllLDEpts~LD~~~--------~~~ 326 (1171)
..+.+. + ..+|++ |+++++.+++++.+ |+++++||||+.+|+.. ...
T Consensus 76 ------------~~~~~~------~----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~ 133 (220)
T 2cvh_A 76 ------------ALSRFI------L----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSR 133 (220)
T ss_dssp ------------HHHHEE------E----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHH
T ss_pred ------------HhhcEE------E----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHH
Confidence 111100 0 134444 46789999999986 99999999999999742 233
Q ss_pred HHHHHHhhcc-CCCEEEEEcCCcc-------------hhh-hcCEEEEEeCC
Q 001055 327 VFDRCIRGEL-SGKTRVLVTNQLH-------------FLS-QVDRIILVHEG 363 (1171)
Q Consensus 327 l~~~l~~~~~-~~~tvi~vtH~~~-------------~l~-~~d~i~~l~~G 363 (1171)
+.+.+.+..+ .+.|+|+++|... .+. .||++++|++.
T Consensus 134 ~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 134 QLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp HHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 4444444333 3789999999865 333 47999999754
No 223
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.33 E-value=7.6e-15 Score=149.36 Aligned_cols=87 Identities=16% Similarity=0.155 Sum_probs=71.5
Q ss_pred EEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEc
Q 001055 789 FEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIP 868 (1171)
Q Consensus 789 ~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~ 868 (1171)
.++++++|+.. .+++++||++++|++++|+||||||||||+++|+|++ |++|+|.++|.++.+. ...+ .+++
T Consensus 10 ~~~~~~~~g~~--~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~ 81 (158)
T 1htw_A 10 DEFSMLRFGKK--FAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMI 81 (158)
T ss_dssp SHHHHHHHHHH--HHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEE
T ss_pred CHHHHHHHHHH--HHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Ccce
Confidence 34567777543 6899999999999999999999999999999999999 9999999999877421 1112 2799
Q ss_pred CCcccccccHHhhcc
Q 001055 869 QSPVLFSGTVRFNLD 883 (1171)
Q Consensus 869 Q~~~lf~~tv~~nl~ 883 (1171)
|++.+|..|+.+|+.
T Consensus 82 q~~~l~~ltv~e~l~ 96 (158)
T 1htw_A 82 YHFDLYRLADPEELE 96 (158)
T ss_dssp EEEECTTCSCTTHHH
T ss_pred eccccccCCcHHHHH
Confidence 999888668888874
No 224
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.33 E-value=6.3e-15 Score=157.55 Aligned_cols=145 Identities=11% Similarity=0.131 Sum_probs=95.4
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCCCCCH
Q 001055 811 IPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSD 890 (1171)
Q Consensus 811 i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~ 890 (1171)
.++|+++||+||||||||||+++|.|+++|+ | ..+++|+++...+..+..+|+..+...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~-- 77 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRK-- 77 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGT--
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccC--
Confidence 4789999999999999999999999999975 4 135667777666655555554211100
Q ss_pred HHHHHHHHHhcHHHHHHHccCC--cchhhhcCCCCCChhHHHHHHHH-HHhccCCCEEEEecCCcCCCHHHHHHHHHHHH
Q 001055 891 ADLWEALERAHLKDAIRRNSLG--LDAQVSEAGENFSVGQRQLLSLS-RALLRRSKILVLDEATAAVDVRTDALIQKTIR 967 (1171)
Q Consensus 891 ~~i~~~l~~~~~~~~i~~lp~g--l~~~~~~~~~~LSgGqkqrl~lA-rall~~p~iLlLDEpTs~LD~~t~~~i~~~l~ 967 (1171)
.+..+.....+.+++..++.+ ++....+.+..+|+||+||+++| ++++.++.++++|||.. ..+.
T Consensus 78 -~~~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l~ 145 (208)
T 3c8u_A 78 -GAPETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDLT 145 (208)
T ss_dssp -TSGGGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGGG
T ss_pred -CCCchhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHHH
Confidence 000001112223334444333 55666777888999999999998 99999999988999852 1122
Q ss_pred HHcCCcEEEEEecChhh-hhh-cCE
Q 001055 968 EEFKSCTMLIIAHRLNT-IID-CDR 990 (1171)
Q Consensus 968 ~~~~~~tvi~vtH~~~~-~~~-~d~ 990 (1171)
.. -..++++.+..+. +.+ +.|
T Consensus 146 ~~--~d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 146 AI--WDVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp GT--CSEEEEECCCHHHHHHHHHHH
T ss_pred Hh--cCEEEEEeCCHHHHHHHHHHH
Confidence 21 2468888888876 333 555
No 225
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.31 E-value=1.8e-12 Score=152.72 Aligned_cols=150 Identities=15% Similarity=0.183 Sum_probs=99.6
Q ss_pred ceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCC----hHH--HhhheEEEcCCccccc-c
Q 001055 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFG----LMD--LRKILGIIPQSPVLFS-G 876 (1171)
Q Consensus 804 l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~----~~~--~r~~i~~v~Q~~~lf~-~ 876 (1171)
-+++||++++|++++|+|+||||||||+++|+|++.|++|+|.++|.|+.... ... .|+.|+|++|++.++. .
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 35788899999999999999999999999999999999999999988775431 112 3677999999987653 4
Q ss_pred cHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhh-hcCCC-----CCChhHHHHHHHHHHhcc-CC-CEEEEe
Q 001055 877 TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQV-SEAGE-----NFSVGQRQLLSLSRALLR-RS-KILVLD 948 (1171)
Q Consensus 877 tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~-~~~~~-----~LSgGqkqrl~lArall~-~p-~iLlLD 948 (1171)
|+++|+.+.. . .++|-.+ +..|. .+-.--+|++.++|++.. .| .+||..
T Consensus 363 tV~e~l~~a~------------~-----------~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 363 VIFDAIQAAK------------A-----------RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHH------------H-----------TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHH------------h-----------cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEe
Confidence 7888774310 0 0111111 11110 011122478888887754 46 455555
Q ss_pred cCCcCCCHHHHHHHHHHHHHHcCCcEEEEEec
Q 001055 949 EATAAVDVRTDALIQKTIREEFKSCTMLIIAH 980 (1171)
Q Consensus 949 EpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH 980 (1171)
.||+|.|.... .+.+.+. .+.|.+++||
T Consensus 420 DattGq~al~~---ak~f~~~-~~itgvIlTK 447 (503)
T 2yhs_A 420 DASTGQNAVSQ---AKLFHEA-VGLTGITLTK 447 (503)
T ss_dssp EGGGTHHHHHH---HHHHHHH-TCCSEEEEEC
T ss_pred cCcccHHHHHH---HHHHHhh-cCCCEEEEEc
Confidence 58888655422 2222221 3678999999
No 226
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.27 E-value=2e-13 Score=158.16 Aligned_cols=206 Identities=9% Similarity=0.018 Sum_probs=125.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCC---CCCCCcE---------EE
Q 001055 98 GDLTPARAFTSLSLFAVLRFPLFMLPNMITQVVNANVSLKRMEEFLLAEEKILLPNPPL---TSGLPAI---------SI 165 (1171)
Q Consensus 98 ~~l~~~~~f~~l~l~~~~~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~---~~~~~~i---------~~ 165 (1171)
+.++.+.+..++.++..+..| .+......+..+..+..|++.++ ++......+.. ......+ .+
T Consensus 63 ~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~~~~~ir~~~~~~itl~~l~~~g~f 138 (361)
T 2gza_A 63 PNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGTISVTIRKPSFTRRTLEDYAQQGFF 138 (361)
T ss_dssp TTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTCCEEEEECCCCCCCCHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCCeEEEEEecCCCCCCHHHHHhcCCc
Confidence 678998888877776655444 11111112222233445666665 11100000000 0001124 67
Q ss_pred EeeEEE---cCCCCCCCce---------eeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce---------
Q 001055 166 RNGYFS---WDSKAERPTL---------LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------- 224 (1171)
Q Consensus 166 ~~~s~~---~~~~~~~~~l---------~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------- 224 (1171)
++++|+ |+.. ++++| +++||.+++|+.++|+||||||||||+++|+|+++|++|.+..
T Consensus 139 ~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~ 217 (361)
T 2gza_A 139 KHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLP 217 (361)
T ss_dssp SCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCT
T ss_pred Cccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCcc
Confidence 888888 7521 23455 9999999999999999999999999999999999998765422
Q ss_pred -ecCcEEEEe-cCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHH
Q 001055 225 -IRGTVAYVP-QVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARA 302 (1171)
Q Consensus 225 -~~~~i~~v~-Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAra 302 (1171)
.+..++|++ |++.+ .++++..+|-.|+.+
T Consensus 218 ~~~~~v~~v~~q~~~~-------------------------------------------------~~~~~~t~~~~i~~~ 248 (361)
T 2gza_A 218 DHPNHVHLFYPSEAKE-------------------------------------------------EENAPVTAATLLRSC 248 (361)
T ss_dssp TCSSEEEEECC-----------------------------------------------------------CCHHHHHHHH
T ss_pred ccCCEEEEeecCcccc-------------------------------------------------ccccccCHHHHHHHH
Confidence 122344444 33210 123445678888889
Q ss_pred hccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeCCE
Q 001055 303 VYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHEGM 364 (1171)
Q Consensus 303 L~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~G~ 364 (1171)
+..+|+.+++|||.. .+. ++.+........|++.++|..+....+||+..+..|.
T Consensus 249 l~~~pd~~l~~e~r~---~~~----~~~l~~l~~g~~~~l~t~H~~~~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 249 LRMKPTRILLAELRG---GEA----YDFINVAASGHGGSITSCHAGSCELTFERLALMVLQN 303 (361)
T ss_dssp TTSCCSEEEESCCCS---THH----HHHHHHHHTTCCSCEEEEECSSHHHHHHHHHHHHTTS
T ss_pred HhcCCCEEEEcCchH---HHH----HHHHHHHhcCCCeEEEEECCCCHHHHHHHHHHHHhcc
Confidence 999999999999986 222 2322222223457899999987666679998887653
No 227
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.25 E-value=4.3e-12 Score=146.75 Aligned_cols=139 Identities=17% Similarity=0.223 Sum_probs=80.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhc-CCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccc-cccHHhhccCCCCCCHHH
Q 001055 815 DKVGIVGRTGAGKSSMLNTLFR-IVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLF-SGTVRFNLDPFSEHSDAD 892 (1171)
Q Consensus 815 e~v~ivG~nGsGKSTLl~~l~g-~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~tv~~nl~~~~~~~~~~ 892 (1171)
..+.|.||+|+||||++++|+| ++.|+.|.+.++|.++.... ..+..+++++|.+.+. +.+- ........
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 108 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS--NRKLELNVVSSPYHLEITPSD------MGNNDRIV 108 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC----------CCHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc--cccceeeeecccceEEecHhh------cCCcchHH
Confidence 3489999999999999999999 88999999999998765422 2367799999987642 1110 00011112
Q ss_pred HHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCC
Q 001055 893 LWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKS 972 (1171)
Q Consensus 893 i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~ 972 (1171)
+.+.++. +... .+++... .||| +..+|+|+|||||++ ||+.+...+.+.|.+...+
T Consensus 109 ~~~~i~~-----~~~~--~~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 109 IQELLKE-----VAQM--EQVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp HHHHHHH-----HTTT--TC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTT
T ss_pred HHHHHHH-----HHHh--ccccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCC
Confidence 2222222 1111 1121111 4676 778999999999999 9999999999999987667
Q ss_pred cEEEEEecChhhh
Q 001055 973 CTMLIIAHRLNTI 985 (1171)
Q Consensus 973 ~tvi~vtH~~~~~ 985 (1171)
+++|++||+.+.+
T Consensus 165 ~~~Il~t~~~~~l 177 (354)
T 1sxj_E 165 IRLIMVCDSMSPI 177 (354)
T ss_dssp EEEEEEESCSCSS
T ss_pred CEEEEEeCCHHHH
Confidence 8999999998654
No 228
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.24 E-value=3.8e-14 Score=170.66 Aligned_cols=173 Identities=13% Similarity=0.071 Sum_probs=115.8
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCccccc-ccHHh
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFS-GTVRF 880 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~~ 880 (1171)
.+++++++.+++|+.++|+||||||||||+++|+|+++|++|.|.++|.+--..+ -+..+++++|...... .|..+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~---~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLY---HENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCC---CSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCC---CCCeEEEEeecccccCCcCHHH
Confidence 4789999999999999999999999999999999999999999999986522221 1344677776654111 14444
Q ss_pred hcc----------CCCCCCHHHHHHHHHHhc-------------HHHHHHHcc---CCcchhhh-------cCCCCCChh
Q 001055 881 NLD----------PFSEHSDADLWEALERAH-------------LKDAIRRNS---LGLDAQVS-------EAGENFSVG 927 (1171)
Q Consensus 881 nl~----------~~~~~~~~~i~~~l~~~~-------------~~~~i~~lp---~gl~~~~~-------~~~~~LSgG 927 (1171)
++. ...+..+.+...++..+. +.+.+.++. .++...+. .....+|||
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G 404 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGN 404 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSS
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCC
Confidence 331 112344444544444321 234444432 23332211 122358999
Q ss_pred HHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcC-CcEEEE--EecChhhhhh-cC
Q 001055 928 QRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLI--IAHRLNTIID-CD 989 (1171)
Q Consensus 928 qkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~-~~tvi~--vtH~~~~~~~-~d 989 (1171)
|+||+++|. + | |+|||+.+.+.+++.|.++.. ++|+++ +||+++.+.. |+
T Consensus 405 ~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 405 TRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp CEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 999987752 1 7 999999888777777766544 688875 8999998865 64
No 229
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.23 E-value=2e-13 Score=149.75 Aligned_cols=138 Identities=12% Similarity=0.127 Sum_probs=94.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHh---cCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccc-cHHhhccC----
Q 001055 813 PSDKVGIVGRTGAGKSSMLNTLF---RIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLDP---- 884 (1171)
Q Consensus 813 ~Ge~v~ivG~nGsGKSTLl~~l~---g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~~nl~~---- 884 (1171)
++++++|+||||||||||+++|+ |+..|+.|+|.++|.+.. ..+...++.++|++.++.. ++.+|+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999988875532 1244556667777665543 67666531
Q ss_pred -------CC--CCCHHHHHHHHHHhcHHHHHHHccCC------------cchhhhcCCCCCChhHHHHHHHHHHh-ccCC
Q 001055 885 -------FS--EHSDADLWEALERAHLKDAIRRNSLG------------LDAQVSEAGENFSVGQRQLLSLSRAL-LRRS 942 (1171)
Q Consensus 885 -------~~--~~~~~~i~~~l~~~~~~~~i~~lp~g------------l~~~~~~~~~~LSgGqkqrl~lAral-l~~p 942 (1171)
.. .....+... +.. ....+ ++....+....||| |+ ||+ +.+|
T Consensus 102 ~~~~~~il~g~~~~~~~~~~-l~~--------~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P 165 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLGQAEA-LDK--------ICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPP 165 (246)
T ss_dssp CTTSCEEEESCCCSHHHHHH-HHT--------TCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCC
T ss_pred cCCCeEEEECCCCCHHHHHH-HHh--------hcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCC
Confidence 00 111111111 110 00111 22223444567998 66 788 9999
Q ss_pred CEEEEe----cCCcCCCHHHHHHHHHHHHHHc
Q 001055 943 KILVLD----EATAAVDVRTDALIQKTIREEF 970 (1171)
Q Consensus 943 ~iLlLD----EpTs~LD~~t~~~i~~~l~~~~ 970 (1171)
++++|| |||+++|+.+.+.+.+.|+.+.
T Consensus 166 ~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 166 HVHGIDDVTGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp SSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred cccccccccccccccCCCCcHHHHHHHHHHHH
Confidence 999999 9999999999999999987754
No 230
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.23 E-value=1.4e-11 Score=143.45 Aligned_cols=74 Identities=24% Similarity=0.326 Sum_probs=66.6
Q ss_pred CCCChhHHHHH------HHHHHhccC-CCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhhhcCEEEEE
Q 001055 922 ENFSVGQRQLL------SLSRALLRR-SKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLL 994 (1171)
Q Consensus 922 ~~LSgGqkqrl------~lArall~~-p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~i~vl 994 (1171)
..|||||+||+ ++||++..+ |++|||||||++||+.+...+.+.|.+...+++||+|||+++....||++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l 358 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV 358 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence 36999999987 667999999 99999999999999999999999999865567999999999855559999999
Q ss_pred e
Q 001055 995 D 995 (1171)
Q Consensus 995 ~ 995 (1171)
+
T Consensus 359 ~ 359 (371)
T 3auy_A 359 K 359 (371)
T ss_dssp E
T ss_pred E
Confidence 7
No 231
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.22 E-value=1.2e-11 Score=144.29 Aligned_cols=147 Identities=15% Similarity=0.213 Sum_probs=91.1
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHH--HhcCCCCCCc-----eEEECCEecCC-CChHHHhhheEEEcCCcccccccHHhh
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNT--LFRIVELERG-----RILIDGFDIAK-FGLMDLRKILGIIPQSPVLFSGTVRFN 881 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~--l~g~~~p~~G-----~I~i~g~~i~~-~~~~~~r~~i~~v~Q~~~lf~~tv~~n 881 (1171)
-|++|++++|+||||||||||++. +.+..+|+.| .+++++.+... .....+++++++.|| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 688999999999999999999994 4577766444 88888765311 112223445665544 45556
Q ss_pred ccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc--cCCCEEEEecCCcCCCHHHH
Q 001055 882 LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL--RRSKILVLDEATAAVDVRTD 959 (1171)
Q Consensus 882 l~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall--~~p~iLlLDEpTs~LD~~t~ 959 (1171)
+.+......+.. .+.+.-++.++ .+|+++++||||+.+|.+..
T Consensus 247 i~~~~~~~~~~~-----------------------------------~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~s 291 (400)
T 3lda_A 247 VAYARAYNADHQ-----------------------------------LRLLDAAAQMMSESRFSLIVVDSVMALYRTDFS 291 (400)
T ss_dssp EEEEECCSHHHH-----------------------------------HHHHHHHHHHHHHSCEEEEEEETGGGGCC----
T ss_pred EEEeccCChHHH-----------------------------------HHHHHHHHHHHHhcCCceEEecchhhhCchhhc
Confidence 543222221111 11222222222 47999999999999997543
Q ss_pred ------------HHHHHHHHHHc--CCcEEEEEecChh-------------------hhhh-cCEEEEEeCcE
Q 001055 960 ------------ALIQKTIREEF--KSCTMLIIAHRLN-------------------TIID-CDRILLLDSGR 998 (1171)
Q Consensus 960 ------------~~i~~~l~~~~--~~~tvi~vtH~~~-------------------~~~~-~d~i~vl~~G~ 998 (1171)
..+.+.|+++. .++|||+|+|... .+.. ||.++.|++|+
T Consensus 292 g~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 292 GRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 45566666654 3799999999832 2344 89999998653
No 232
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.21 E-value=1.2e-11 Score=140.68 Aligned_cols=160 Identities=16% Similarity=0.135 Sum_probs=103.6
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH----Hhhh--eEEEcCCcccccc-cHHhhcc
Q 001055 811 IPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD----LRKI--LGIIPQSPVLFSG-TVRFNLD 883 (1171)
Q Consensus 811 i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~----~r~~--i~~v~Q~~~lf~~-tv~~nl~ 883 (1171)
.++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+......+ ++++ +.+++|+..++.. ++++|+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999997765432 3344 5599999877754 7888774
Q ss_pred CCCCCCHHHHHHHHHHhcHHHHHHHccCCcch-hhhcCCC-C-CChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHH
Q 001055 884 PFSEHSDADLWEALERAHLKDAIRRNSLGLDA-QVSEAGE-N-FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 960 (1171)
Q Consensus 884 ~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~-~~~~~~~-~-LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~ 960 (1171)
.. ... +.+. .++..|. . -..=..+.-.++|++..++++++||.+|. .|.
T Consensus 206 ~~-----------~~~------------~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~---- 257 (328)
T 3e70_C 206 HA-----------KAR------------GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAI---- 257 (328)
T ss_dssp HH-----------HHH------------TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THH----
T ss_pred HH-----------Hhc------------cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHH----
Confidence 21 000 1110 0111111 0 01112333458999998999999996654 332
Q ss_pred HHHHHHHHHc--CCcEEEEEecChhhh---------hh-cCEEEEEeCcEEE
Q 001055 961 LIQKTIREEF--KSCTMLIIAHRLNTI---------ID-CDRILLLDSGRVL 1000 (1171)
Q Consensus 961 ~i~~~l~~~~--~~~tvi~vtH~~~~~---------~~-~d~i~vl~~G~i~ 1000 (1171)
.+.++... .+.|+|++||.-... .. .-.|..+..|+-+
T Consensus 258 --~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 258 --VEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp --HHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred --HHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 22233322 478999999953321 11 3466666666643
No 233
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.20 E-value=9.6e-12 Score=142.25 Aligned_cols=122 Identities=16% Similarity=0.089 Sum_probs=82.0
Q ss_pred cceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCceEEEC-CEecCCCChHHHhhheEEEcCCcccccc-cHH
Q 001055 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-LERGRILID-GFDIAKFGLMDLRKILGIIPQSPVLFSG-TVR 879 (1171)
Q Consensus 803 ~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~-p~~G~I~i~-g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~ 879 (1171)
-++++++. .+|++++|+||||||||||+++|+|... |..|+|.++ |.+.. ...+..++++||++.+++. |++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 56777764 4799999999999999999999999999 999999987 76542 1345679999999988865 898
Q ss_pred hhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc
Q 001055 880 FNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL 939 (1171)
Q Consensus 880 ~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall 939 (1171)
++-. . ....+++.+ .+.++++. .|+....+....+|| ||+||++||++++
T Consensus 280 e~~l-~-~l~~~e~~~-----~~~e~l~~--~gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 280 EFGL-W-HLEPEQITQ-----GFVEFHDY--LGHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp TCCC-C-CCCHHHHHH-----TSGGGGGG--TTCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred Hhhh-c-CCCHHHHHH-----HHHHHHHH--cCCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 8632 1 223333321 23333333 355555666677899 9999999999764
No 234
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.20 E-value=1e-13 Score=148.16 Aligned_cols=133 Identities=17% Similarity=0.213 Sum_probs=92.3
Q ss_pred ecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHhc----CCC--CCHHHHHHH
Q 001055 188 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILF----GSA--FEPARYEKA 261 (1171)
Q Consensus 188 i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~----g~~--~~~~~~~~~ 261 (1171)
.++|++++|+||||||||||+++|+|.++|. | ..+++++|+...+..+..+|+.. +.+ ++.......
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------LPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRL 91 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------CCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------CceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHH
Confidence 4789999999999999999999999999875 3 24899999998887777776531 111 122222221
Q ss_pred HHHcCchHHHhcCCCC--CccccCCCCCccChHHHHHHHHH-HHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCC
Q 001055 262 IDVTSLQHDLDLLPGG--DVTEIGERGVNISGGQKQRVSMA-RAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSG 338 (1171)
Q Consensus 262 ~~~~~l~~~~~~~~~~--~~~~i~~~g~~LSGGqrqRv~LA-raL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~ 338 (1171)
+..++.+ ....+.+.+..+||||+||+++| ++++.++.++++|||.. ..+....
T Consensus 92 ---------l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l~~~~--- 148 (208)
T 3c8u_A 92 ---------CHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDLTAIW--- 148 (208)
T ss_dssp ---------HHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGGGGTC---
T ss_pred ---------HHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHHHHhc---
Confidence 1111111 23345677888999999999998 88888888888888842 1111111
Q ss_pred CEEEEEcCCcch
Q 001055 339 KTRVLVTNQLHF 350 (1171)
Q Consensus 339 ~tvi~vtH~~~~ 350 (1171)
..+|+++++.+.
T Consensus 149 d~~i~vd~~~~~ 160 (208)
T 3c8u_A 149 DVSIRLEVPMAD 160 (208)
T ss_dssp SEEEEECCCHHH
T ss_pred CEEEEEeCCHHH
Confidence 478888888775
No 235
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.18 E-value=4.5e-14 Score=149.73 Aligned_cols=147 Identities=14% Similarity=0.205 Sum_probs=90.2
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHhcCCC-------------CCCCccceecCcEEEE-----------ecCCCCCcccHH
Q 001055 189 PVGSLVAIVGGTGEGKTSLISAMLGELP-------------PVSDASAVIRGTVAYV-----------PQVSWIFNATVR 244 (1171)
Q Consensus 189 ~~Ge~v~lvG~nGsGKSTLl~~l~G~~~-------------~~~g~~~~~~~~i~~v-----------~Q~~~l~~~Tv~ 244 (1171)
++|++++|+||||||||||+++|+|+++ |..|.. .+ +.|. +|+++++..++.
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~---~g-~~~~~~~~~~~~~~i~~~~~l~~~~~~ 77 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEE---DG-KDYYFVTREMMQRDIAAGDFIEHAEFS 77 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCC---BT-TTBEECCHHHHHHHHHHTCEEEEEEET
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCccc---CC-ceEEEccHHHHHHHHHcCCCEeeeeec
Confidence 5799999999999999999999999875 444421 11 1222 456666777888
Q ss_pred HHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHH-HhccCCCEEEEeCcCCCCCHHH
Q 001055 245 DNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMAR-AVYSNSDVFIFDDPLSALDAHV 323 (1171)
Q Consensus 245 eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAr-aL~~~~~vllLDEpts~LD~~~ 323 (1171)
+|+ +|. ..+.+.++++..... .++..+.|..+... + ++ .|| +++.+|++++|||+|+++|.++
T Consensus 78 ~n~-~g~--~~~~i~~~~~~~~~~-~~~~~~~g~~~~~~----------~-~~-~~~~~~l~~p~~~ilde~~~~~d~~~ 141 (198)
T 1lvg_A 78 GNL-YGT--SKEAVRAVQAMNRIC-VLDVDLQGVRSIKK----------T-DL-CPIYIFVQPPSLDVLEQRLRLRNTET 141 (198)
T ss_dssp TEE-EEE--EHHHHHHHHHTTCEE-EEECCHHHHHHHTT----------S-SC-CCEEEEEECSCHHHHHHHHHHHTCSC
T ss_pred Ccc-CCC--CHHHHHHHHHcCCcE-EEECCHHHHHHHHh----------c-CC-CcEEEEEeCCCHHHHHHHHHhcCCCC
Confidence 887 553 345555555432110 00111111111110 0 12 566 7889999999999999999998
Q ss_pred HHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEeC
Q 001055 324 GRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVHE 362 (1171)
Q Consensus 324 ~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~~ 362 (1171)
.+.|.+.+..... + +.++| +. ..+|+|+++++
T Consensus 142 e~~i~~~l~~~~~-~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 142 EESLAKRLAAART-D---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp HHHHHHHHHHHHH-H---TTGGG--ST-TTCSEEEECSS
T ss_pred HHHHHHHHHHHHH-H---HHHhh--cc-CCceEEEECCC
Confidence 8888776654321 1 24456 22 66899988764
No 236
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.18 E-value=5.9e-14 Score=164.63 Aligned_cols=141 Identities=16% Similarity=0.142 Sum_probs=94.7
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCC----ChHHHhh
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF----GLMDLRK 862 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~----~~~~~r~ 862 (1171)
++++++++.|+.. .+|+++ + ..+|++++|+||||||||||+++|+|++.|++|+|.+.|.++... +...++.
T Consensus 144 ~~l~~Lg~~~~~~--~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~ 219 (418)
T 1p9r_A 144 LDLHSLGMTAHNH--DNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNP 219 (418)
T ss_dssp CCGGGSCCCHHHH--HHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBG
T ss_pred CCHHHcCCCHHHH--HHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEcc
Confidence 5566777766432 478888 5 389999999999999999999999999999999999998877421 1122344
Q ss_pred heEEEc---------CCcccc--c-----ccHHhhccCC----------CCCCHHHHHHHHHHhcHHHHHHHccCCcchh
Q 001055 863 ILGIIP---------QSPVLF--S-----GTVRFNLDPF----------SEHSDADLWEALERAHLKDAIRRNSLGLDAQ 916 (1171)
Q Consensus 863 ~i~~v~---------Q~~~lf--~-----~tv~~nl~~~----------~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~ 916 (1171)
.+++.+ |+|.++ . .|+.+++... ...+..+..+.+...++ +..
T Consensus 220 ~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl-----------~~~ 288 (418)
T 1p9r_A 220 RVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGI-----------EPF 288 (418)
T ss_dssp GGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTC-----------CHH
T ss_pred ccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCC-----------cHH
Confidence 566544 888642 2 2677766421 00111122223333322 222
Q ss_pred hhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 001055 917 VSEAGENFSVGQRQLLSLSRALLRRSKILV 946 (1171)
Q Consensus 917 ~~~~~~~LSgGqkqrl~lArall~~p~iLl 946 (1171)
. ...+|||||+|| |||+|+.+|++..
T Consensus 289 ~--~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 289 L--ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp H--HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred H--HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 1 234699999999 9999999999875
No 237
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.18 E-value=3e-11 Score=143.55 Aligned_cols=74 Identities=19% Similarity=0.230 Sum_probs=67.1
Q ss_pred ccChHHHHHHHHHHHhc----cCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEEEEe
Q 001055 288 NISGGQKQRVSMARAVY----SNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRIILVH 361 (1171)
Q Consensus 288 ~LSGGqrqRv~LAraL~----~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~~l~ 361 (1171)
.||||||||++||++|+ .+|++|||||||++||+..+..+.+.+......+.++|+|||+..++..||+++.|.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 59999999999999999 689999999999999999999999977665545789999999988888899999986
No 238
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.16 E-value=5.2e-11 Score=138.65 Aligned_cols=76 Identities=25% Similarity=0.319 Sum_probs=65.8
Q ss_pred CCccChHHHHHH------HHHHHhccC-CCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhhhcCEEE
Q 001055 286 GVNISGGQKQRV------SMARAVYSN-SDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLSQVDRII 358 (1171)
Q Consensus 286 g~~LSGGqrqRv------~LAraL~~~-~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~~~d~i~ 358 (1171)
...||||||||+ ++||+|..+ |+++||||||++||+..+..+.+.+... ..+.++|+|||+++....||+++
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~-~~~~~vi~~th~~~~~~~~d~~~ 356 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKV-KSIPQMIIITHHRELEDVADVII 356 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHC-CSCSEEEEEESCGGGGGGCSEEE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHh-ccCCeEEEEEChHHHHhhCCEEE
Confidence 358999999988 567999999 9999999999999999999999877654 34579999999998666789999
Q ss_pred EEeC
Q 001055 359 LVHE 362 (1171)
Q Consensus 359 ~l~~ 362 (1171)
+|++
T Consensus 357 ~l~k 360 (371)
T 3auy_A 357 NVKK 360 (371)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9973
No 239
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.15 E-value=3.1e-11 Score=121.65 Aligned_cols=91 Identities=19% Similarity=0.194 Sum_probs=69.0
Q ss_pred cceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc--eEEECCEecCCCChHHHhhheEEEcCCcccccccHHh
Q 001055 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG--RILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRF 880 (1171)
Q Consensus 803 ~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G--~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~ 880 (1171)
+|+++ +|+.++|+||||+|||||++++++.+.+ +| .+++++.++..
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~-------------------------- 77 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPL-------------------------- 77 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCC--------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhH--------------------------
Confidence 46666 8999999999999999999999999987 57 55554322110
Q ss_pred hccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHH
Q 001055 881 NLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDA 960 (1171)
Q Consensus 881 nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~ 960 (1171)
. +++.+|++|+||||++ +|...++
T Consensus 78 ------~-------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~ 101 (149)
T 2kjq_A 78 ------T-------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQA 101 (149)
T ss_dssp ------C-------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHH
T ss_pred ------H-------------------------------------------------HHHhCCCEEEEeCccc-cChHHHH
Confidence 0 2456899999999998 6655588
Q ss_pred HHHHHHHHHcC-CcE-EEEEecC
Q 001055 961 LIQKTIREEFK-SCT-MLIIAHR 981 (1171)
Q Consensus 961 ~i~~~l~~~~~-~~t-vi~vtH~ 981 (1171)
.+.+.+..... +++ +|++||.
T Consensus 102 ~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 102 LLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHHHcCCcEEEEECCC
Confidence 88888877653 577 8888885
No 240
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.15 E-value=3.7e-12 Score=133.71 Aligned_cols=127 Identities=14% Similarity=0.076 Sum_probs=78.5
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------ecCcEEEEecCCCCCcccHHHHHhcCCCCCHH
Q 001055 187 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------IRGTVAYVPQVSWIFNATVRDNILFGSAFEPA 256 (1171)
Q Consensus 187 ~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~ 256 (1171)
.+++|++++|+||||||||||+++|+|. |+.|.+.. .+..++|++|++. ...||.+|+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~-~~~~v~~~l~~~~----- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ-QNRMIMQIAADVA----- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH-HHHHHHHHHHHHH-----
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh-hhHHHHHHHHHHH-----
Confidence 4789999999999999999999999998 44443211 1122566666543 3468888886421
Q ss_pred HHHHHHHHcCchHHHhcCCC-CCcc---ccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHH
Q 001055 257 RYEKAIDVTSLQHDLDLLPG-GDVT---EIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 332 (1171)
Q Consensus 257 ~~~~~~~~~~l~~~~~~~~~-~~~~---~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~ 332 (1171)
......+....++.... .... ..+.....+|+|++||+++||++.++|+++ +|+...+.+++.+.
T Consensus 77 ---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~ 145 (191)
T 1zp6_A 77 ---GRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFA 145 (191)
T ss_dssp ---HHHHHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTT
T ss_pred ---HHHhccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHh
Confidence 00000010000000000 0000 012234579999999999999999999876 68888887777543
No 241
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.13 E-value=5e-11 Score=123.96 Aligned_cols=112 Identities=22% Similarity=0.180 Sum_probs=74.4
Q ss_pred eEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHH
Q 001055 185 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDV 264 (1171)
Q Consensus 185 sl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~ 264 (1171)
+|.+++|+.++|+||||||||||+++++|.+.|..|... .|+ ++.+.+. .+....
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~------~~~---------~~~~~~~--------~~~~~~-- 86 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG------YFF---------DTKDLIF--------RLKHLM-- 86 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC------CEE---------EHHHHHH--------HHHHHH--
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE------EEE---------EHHHHHH--------HHHHHh--
Confidence 567788999999999999999999999999876554321 111 1222110 111110
Q ss_pred cCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCC-CCCHHHHHHHHHHHHhhccCCCEEEE
Q 001055 265 TSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS-ALDAHVGRQVFDRCIRGELSGKTRVL 343 (1171)
Q Consensus 265 ~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts-~LD~~~~~~l~~~l~~~~~~~~tvi~ 343 (1171)
... ... -....+.+|++|+||||++ ++|+.....+++.+......++++|+
T Consensus 87 -------~~~-------------~~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~ 138 (180)
T 3ec2_A 87 -------DEG-------------KDT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTII 138 (180)
T ss_dssp -------HHT-------------CCS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred -------cCc-------------hHH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEE
Confidence 000 000 0122345899999999995 89999988888765555556899999
Q ss_pred EcCCcc
Q 001055 344 VTNQLH 349 (1171)
Q Consensus 344 vtH~~~ 349 (1171)
+||...
T Consensus 139 tsn~~~ 144 (180)
T 3ec2_A 139 TTNYSL 144 (180)
T ss_dssp ECCCCS
T ss_pred EcCCCh
Confidence 999754
No 242
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.13 E-value=4.3e-14 Score=148.44 Aligned_cols=164 Identities=12% Similarity=-0.001 Sum_probs=98.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee------cCcEEEEecCCCCC-cccHHHHHhcCCCCCHHHHHHHHH
Q 001055 191 GSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------RGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAID 263 (1171)
Q Consensus 191 Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~------~~~i~~v~Q~~~l~-~~Tv~eni~~g~~~~~~~~~~~~~ 263 (1171)
|++++|+||||||||||+++|++ |.+|.+..- ...+++++|.+... ..|+++|+.+. ......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~ 71 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDL-------TVNFLL 71 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHH-------HHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHHH-------HHHHHh
Confidence 68999999999999999999997 444433221 11245666655332 45777777531 000110
Q ss_pred HcCchHHHhcCCCCCccccCCCCCcc--ChHHHHHHHHHH------HhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhc
Q 001055 264 VTSLQHDLDLLPGGDVTEIGERGVNI--SGGQKQRVSMAR------AVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE 335 (1171)
Q Consensus 264 ~~~l~~~~~~~~~~~~~~i~~~g~~L--SGGqrqRv~LAr------aL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~ 335 (1171)
.+....++.. ... ... +....+ |+|++|++.++. +++.+|....+|+ +||+...+. ++.+....
T Consensus 72 -~~~~~ild~~-~~~-~~~-~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~ 143 (189)
T 2bdt_A 72 -AQNDVVLDYI-AFP-DEA-EALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKG 143 (189)
T ss_dssp -TTCEEEEESC-CCH-HHH-HHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTT
T ss_pred -cCCcEEEeec-cCH-HHH-HHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcC
Confidence 0000000000 000 000 001234 889888888888 8888888878884 799988877 77665554
Q ss_pred cCCCEEEEEcCC-cchhhh-cCEEEEEeCCEEEEecChhHH
Q 001055 336 LSGKTRVLVTNQ-LHFLSQ-VDRIILVHEGMVKEEGTFEDL 374 (1171)
Q Consensus 336 ~~~~tvi~vtH~-~~~l~~-~d~i~~l~~G~i~~~g~~~~l 374 (1171)
..+.++|.+||. ++.++. ||+|+ ++|+++.+|+++.+
T Consensus 144 ~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 144 IDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp CCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred CCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 457899999998 888876 69998 99999998887654
No 243
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.12 E-value=3.7e-11 Score=124.96 Aligned_cols=111 Identities=16% Similarity=0.159 Sum_probs=75.7
Q ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCCC
Q 001055 808 SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSE 887 (1171)
Q Consensus 808 s~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~ 887 (1171)
+|.+++|+.++|+||||+|||||++++++.+.|.+|...+ + .+..+
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~------------------~---------~~~~~------- 77 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGY------------------F---------FDTKD------- 77 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCC------------------E---------EEHHH-------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEE------------------E---------EEHHH-------
Confidence 4677889999999999999999999999999877663110 0 01111
Q ss_pred CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCc-CCCHHHHHHHHHHH
Q 001055 888 HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA-AVDVRTDALIQKTI 966 (1171)
Q Consensus 888 ~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs-~LD~~t~~~i~~~l 966 (1171)
+.+.+.. .... . ... -....+.+|++|+||||++ ++|+.....+.+.+
T Consensus 78 -----~~~~~~~-----~~~~-----------~--~~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll 126 (180)
T 3ec2_A 78 -----LIFRLKH-----LMDE-----------G--KDT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYII 126 (180)
T ss_dssp -----HHHHHHH-----HHHH-----------T--CCS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHH
T ss_pred -----HHHHHHH-----HhcC-----------c--hHH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHH
Confidence 1111110 0000 0 000 1122245999999999995 89999999999999
Q ss_pred HHHc-CCcEEEEEecChh
Q 001055 967 REEF-KSCTMLIIAHRLN 983 (1171)
Q Consensus 967 ~~~~-~~~tvi~vtH~~~ 983 (1171)
.... .++++|++||...
T Consensus 127 ~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 127 TYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHTTCEEEEECCCCS
T ss_pred HHHHHcCCCEEEEcCCCh
Confidence 8765 6799999999764
No 244
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.12 E-value=2.2e-12 Score=141.51 Aligned_cols=138 Identities=14% Similarity=0.056 Sum_probs=85.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHh---cCCCCCCCcccee--------cCcEEEEecCCCCC-cccHHHHHhcC-------
Q 001055 190 VGSLVAIVGGTGEGKTSLISAML---GELPPVSDASAVI--------RGTVAYVPQVSWIF-NATVRDNILFG------- 250 (1171)
Q Consensus 190 ~Ge~v~lvG~nGsGKSTLl~~l~---G~~~~~~g~~~~~--------~~~i~~v~Q~~~l~-~~Tv~eni~~g------- 250 (1171)
++++++|+||||||||||+++|+ |...|+.|.+... ...+++++|++.++ ..++.+++...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~ 105 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQ 105 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 47999999999999999999999 9998887654321 11245566776664 56888888531
Q ss_pred ------CCCCHHHHHHHHHHcCch--HHHhcCCCC-CccccCCCCCccChHHHHHHHHHHHh-ccCCCEEEEe----CcC
Q 001055 251 ------SAFEPARYEKAIDVTSLQ--HDLDLLPGG-DVTEIGERGVNISGGQKQRVSMARAV-YSNSDVFIFD----DPL 316 (1171)
Q Consensus 251 ------~~~~~~~~~~~~~~~~l~--~~~~~~~~~-~~~~i~~~g~~LSGGqrqRv~LAraL-~~~~~vllLD----Ept 316 (1171)
.+....+.....+..... -.++.-+.. .....+.....||| |+ ||| +.+|++++|| |||
T Consensus 106 ~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~ 178 (246)
T 2bbw_A 106 HWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPL 178 (246)
T ss_dssp CEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBC
T ss_pred eEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccccccc
Confidence 111221111111101100 000000000 00011223457999 66 788 9999999999 999
Q ss_pred CCCCHHHHHHHHHHHHhh
Q 001055 317 SALDAHVGRQVFDRCIRG 334 (1171)
Q Consensus 317 s~LD~~~~~~l~~~l~~~ 334 (1171)
++||+.+.+.+.+.+...
T Consensus 179 ~~ld~~~~~~i~~~l~~~ 196 (246)
T 2bbw_A 179 VQQEDDKPEAVAARLRQY 196 (246)
T ss_dssp BCCGGGSHHHHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHH
Confidence 999999888887766544
No 245
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.11 E-value=1.1e-11 Score=126.09 Aligned_cols=81 Identities=15% Similarity=0.163 Sum_probs=64.2
Q ss_pred EeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCc-------EEEEecCCCC
Q 001055 166 RNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGT-------VAYVPQVSWI 238 (1171)
Q Consensus 166 ~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~-------i~~v~Q~~~l 238 (1171)
+++++.|+ ++.+++++||++++|++++|+||||||||||+++|+|.+ |++|.+...... -.+++|++.+
T Consensus 11 ~~~~~~~g---~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~~~l 86 (158)
T 1htw_A 11 EFSMLRFG---KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYHFDL 86 (158)
T ss_dssp HHHHHHHH---HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEEEEC
T ss_pred HHHHHHHH---HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceecccc
Confidence 34566664 246899999999999999999999999999999999999 888765321111 1278999888
Q ss_pred CcccHHHHHh-cC
Q 001055 239 FNATVRDNIL-FG 250 (1171)
Q Consensus 239 ~~~Tv~eni~-~g 250 (1171)
+..|+.||+. +|
T Consensus 87 ~~ltv~e~l~~~g 99 (158)
T 1htw_A 87 YRLADPEELEFMG 99 (158)
T ss_dssp TTCSCTTHHHHST
T ss_pred ccCCcHHHHHHcC
Confidence 8889999995 44
No 246
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.10 E-value=1.1e-12 Score=148.65 Aligned_cols=139 Identities=18% Similarity=0.204 Sum_probs=94.8
Q ss_pred ccEEEEeeEEEeCCCCCCcceeeeEEE-------------------cCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCc
Q 001055 785 GSIKFEDVVLRYRPELPPVLHGLSFTI-------------------PPSDKVGIVGRTGAGKSSMLNTLFRIVE--LERG 843 (1171)
Q Consensus 785 g~i~~~~vs~~y~~~~~~~l~~vs~~i-------------------~~Ge~v~ivG~nGsGKSTLl~~l~g~~~--p~~G 843 (1171)
+.|+++||++.|. ++++++++.+ .+|+++||+||||||||||+++|.|++. |++|
T Consensus 36 ~~i~~~~v~~~y~----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G 111 (308)
T 1sq5_A 36 EDLSLEEVAEIYL----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHR 111 (308)
T ss_dssp TTCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCC
T ss_pred cccchHhHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCC
Confidence 3589999999994 5899999988 9999999999999999999999999998 9999
Q ss_pred eEEE---CCEecCCCChHHHhhheEEEcCCccccc-ccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhc
Q 001055 844 RILI---DGFDIAKFGLMDLRKILGIIPQSPVLFS-GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSE 919 (1171)
Q Consensus 844 ~I~i---~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~ 919 (1171)
+|.+ ||.+. + ...++.++++ |+..++. .|+.+|+... ..+..+-. .+..
T Consensus 112 ~i~vi~~d~~~~---~-~~~~~~~~~v-q~~~~~~~~~~~~~~~~~---------------------~~l~~~~~-~i~~ 164 (308)
T 1sq5_A 112 RVELITTDGFLH---P-NQVLKERGLM-KKKGFPESYDMHRLVKFV---------------------SDLKSGVP-NVTA 164 (308)
T ss_dssp CEEEEEGGGGBC---C-HHHHHHHTCT-TCTTSGGGBCHHHHHHHH---------------------HHHTTTCS-CEEE
T ss_pred eEEEEecCCccC---c-HHHHHhCCEe-ecCCCCCCccHHHHHHHH---------------------HHHhCCCC-ceec
Confidence 9999 88764 2 2456678888 7665443 3666554321 11111111 0000
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCH
Q 001055 920 AGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 956 (1171)
Q Consensus 920 ~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~ 956 (1171)
.....+.+ +|+..+.+.+.+|+++|+|.|....+.
T Consensus 165 P~~~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 165 PVYSHLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp CCEETTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred cccccccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 01111222 333333355678899999999887763
No 247
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.10 E-value=7.6e-13 Score=147.45 Aligned_cols=144 Identities=16% Similarity=0.124 Sum_probs=104.1
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCc-cccc-ccHH
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSP-VLFS-GTVR 879 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~-~lf~-~tv~ 879 (1171)
.+++++++.+++| ++|+||||||||||+++|+|.+.+ |.|.++|.++........++.+++++|.+ ..+. -++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 5899999999999 999999999999999999999887 79999998887666666778899999986 3333 3677
Q ss_pred hhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCc-------
Q 001055 880 FNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA------- 952 (1171)
Q Consensus 880 ~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs------- 952 (1171)
+|++......... + .+ ......++....|||||+||+.+++|+.++|++| |||+.
T Consensus 110 Deid~~~~~r~~~--~----~~----------~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~ 171 (274)
T 2x8a_A 110 DEVDALCPRRSDR--E----TG----------ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDK 171 (274)
T ss_dssp ETCTTTCC-------------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCE
T ss_pred ehhhhhhcccCCC--c----ch----------HHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCe
Confidence 7887543211100 0 00 0011112222359999999999999999999975 99875
Q ss_pred -----CCCHHHHHHHHHHHH
Q 001055 953 -----AVDVRTDALIQKTIR 967 (1171)
Q Consensus 953 -----~LD~~t~~~i~~~l~ 967 (1171)
--|.+.+..|++.+.
T Consensus 172 ~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 172 TLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEECCSCCHHHHHHHHHHHT
T ss_pred EEEeCCcCHHHHHHHHHHHH
Confidence 236677777766553
No 248
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.09 E-value=5e-10 Score=121.84 Aligned_cols=150 Identities=16% Similarity=0.191 Sum_probs=82.6
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHhc--CCCCCCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHH
Q 001055 187 DIPVGSLVAIVGGTGEGKTSLISAMLG--ELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDV 264 (1171)
Q Consensus 187 ~i~~Ge~v~lvG~nGsGKSTLl~~l~G--~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~ 264 (1171)
.+++|++++|+||||||||||++.|++ ..+|+.|+. .+.+.|+.-+..+.. ++..+..+.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~---~~~~~~i~~~~~~~~---------------~~~~~~~~~ 81 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGG---EGKAMYIDTEGTFRP---------------ERLLAVAER 81 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCC---SSEEEEEESSSCCCH---------------HHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCC---CCeEEEEECCCCcCH---------------HHHHHHHHH
Confidence 589999999999999999999999999 555532221 123555554432111 111111111
Q ss_pred cCchH--HHhcCCCCCccccCCCCCccChHHHHH-HHHHHHhc--cCCCEEEEeCcCCCCCHH-------H-----HHHH
Q 001055 265 TSLQH--DLDLLPGGDVTEIGERGVNISGGQKQR-VSMARAVY--SNSDVFIFDDPLSALDAH-------V-----GRQV 327 (1171)
Q Consensus 265 ~~l~~--~~~~~~~~~~~~i~~~g~~LSGGqrqR-v~LAraL~--~~~~vllLDEpts~LD~~-------~-----~~~l 327 (1171)
.+... .++.+ ... ...++.+... +.-++.++ .+|+++++|||++.+|+. . ...+
T Consensus 82 ~g~~~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~ 152 (243)
T 1n0w_A 82 YGLSGSDVLDNV-----AYA----RAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARF 152 (243)
T ss_dssp TTCCHHHHHHTE-----EEE----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHH
T ss_pred cCCCHHHHhhCe-----EEE----ecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHH
Confidence 11110 01110 000 1245554332 33333333 589999999999999985 3 2344
Q ss_pred HHHHHhhcc-CCCEEEEEcCCcchhh--------------------hcCEEEEEeCC
Q 001055 328 FDRCIRGEL-SGKTRVLVTNQLHFLS--------------------QVDRIILVHEG 363 (1171)
Q Consensus 328 ~~~l~~~~~-~~~tvi~vtH~~~~l~--------------------~~d~i~~l~~G 363 (1171)
+..+.+... .|.|+|+++|...... .||+++.|++|
T Consensus 153 ~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 153 LRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp HHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 444444333 3899999999654322 36999999865
No 249
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.07 E-value=1.5e-11 Score=138.86 Aligned_cols=113 Identities=17% Similarity=0.100 Sum_probs=75.6
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEE---CCEecCCCChHHHh-hheEEEcCCcccc------cccHH
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI---DGFDIAKFGLMDLR-KILGIIPQSPVLF------SGTVR 879 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i---~g~~i~~~~~~~~r-~~i~~v~Q~~~lf------~~tv~ 879 (1171)
.+.+|++++|+||||||||||+++|. +.+|++|+|.+ +|.++..... ..+ +.+||++|+|.+. ..|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 44679999999999999999999999 99999999999 9988865432 222 3699999999542 3478
Q ss_pred hhcc-CCC----------C--C---CHHHHHHHHHHhcHHH-HHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001055 880 FNLD-PFS----------E--H---SDADLWEALERAHLKD-AIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 936 (1171)
Q Consensus 880 ~nl~-~~~----------~--~---~~~~i~~~l~~~~~~~-~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 936 (1171)
+|+. .+. . + ....+.++++..++.+ ..++ ....|||.++|++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~-----------~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKS-----------YLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHH-----------HHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHH-----------HHHHHHHHHHHHHHHhc
Confidence 7772 121 1 1 1234666666655543 2222 23469999999999987
No 250
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.06 E-value=1.4e-10 Score=116.73 Aligned_cols=94 Identities=20% Similarity=0.239 Sum_probs=68.5
Q ss_pred ceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHH
Q 001055 180 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE 259 (1171)
Q Consensus 180 ~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~ 259 (1171)
+|+++ +|+.++|+||||||||||+++++|.+.+. |. .+.|++.......
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~------~~~~~~~~~~~~~------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GK------NAAYIDAASMPLT------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TC------CEEEEETTTSCCC-------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CC------cEEEEcHHHhhHH-------------------
Confidence 45555 89999999999999999999999998762 31 2455554422110
Q ss_pred HHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCC
Q 001055 260 KAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGK 339 (1171)
Q Consensus 260 ~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~ 339 (1171)
+++.+|++|+||||++ +|+...+.+++.+.....+|+
T Consensus 79 ------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~ 115 (149)
T 2kjq_A 79 ------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGK 115 (149)
T ss_dssp ------------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTC
T ss_pred ------------------------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCC
Confidence 3456899999999998 666557788876555555578
Q ss_pred E-EEEEcCC
Q 001055 340 T-RVLVTNQ 347 (1171)
Q Consensus 340 t-vi~vtH~ 347 (1171)
+ +|++||.
T Consensus 116 ~~iiits~~ 124 (149)
T 2kjq_A 116 GFLLLGSEY 124 (149)
T ss_dssp CEEEEEESS
T ss_pred cEEEEECCC
Confidence 7 8888874
No 251
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.03 E-value=3.5e-11 Score=137.62 Aligned_cols=115 Identities=18% Similarity=0.209 Sum_probs=76.1
Q ss_pred CceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCC-CCCCccce---------ecCcEEEEecCCCCC-cccHHHHH
Q 001055 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP-PVSDASAV---------IRGTVAYVPQVSWIF-NATVRDNI 247 (1171)
Q Consensus 179 ~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~-~~~g~~~~---------~~~~i~~v~Q~~~l~-~~Tv~eni 247 (1171)
.-++++++. .+|++++|+||||||||||+++|+|..+ |.+|.+.. .+..+++++|++.++ ..||+++.
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~ 282 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFG 282 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTCC
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHhh
Confidence 357777774 4899999999999999999999999999 98876532 233689999999886 56999964
Q ss_pred hcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhc
Q 001055 248 LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY 304 (1171)
Q Consensus 248 ~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~ 304 (1171)
+.+ .+.+..... ..+.++.+.. ....+....+|| ||+||++||++++
T Consensus 283 l~~--l~~~e~~~~-----~~e~l~~~gl--~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 283 LWH--LEPEQITQG-----FVEFHDYLGH--CKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp CCC--CCHHHHHHT-----SGGGGGGTTC--SSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred hcC--CCHHHHHHH-----HHHHHHHcCC--chhcCCCcccCC-HHHHHHHHHhcCC
Confidence 332 233222111 1111221111 011233446899 9999999998864
No 252
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.03 E-value=7e-11 Score=139.32 Aligned_cols=144 Identities=15% Similarity=0.151 Sum_probs=93.4
Q ss_pred eeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee------------------cCcEEEEecCCCCC-cc
Q 001055 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------------RGTVAYVPQVSWIF-NA 241 (1171)
Q Consensus 181 l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~------------------~~~i~~v~Q~~~l~-~~ 241 (1171)
-+++||++++|++++|+|+||||||||+++|+|.++|++|.+... +..|+|++|++.++ ..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 467999999999999999999999999999999998887654321 23489999998765 67
Q ss_pred cHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhcc-CC-CEEEEeCcCCCC
Q 001055 242 TVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYS-NS-DVFIFDDPLSAL 319 (1171)
Q Consensus 242 Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~-~~-~vllLDEpts~L 319 (1171)
||++||.++.. .+....+-...+.... -..|-.-.++++.++|++.. .| ++||..+|+++.
T Consensus 363 tV~e~l~~a~~------------~~~DvVLIDTaGrl~~-----~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq 425 (503)
T 2yhs_A 363 VIFDAIQAAKA------------RNIDVLIADTAGRLQN-----KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ 425 (503)
T ss_dssp HHHHHHHHHHH------------TTCSEEEECCCCSCCC-----HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH
T ss_pred HHHHHHHHHHh------------cCCCEEEEeCCCccch-----hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH
Confidence 99999975411 0000000000110000 01222234578889997754 46 466666699987
Q ss_pred CHHHHHHHHHHHHhhccCCCEEEEEcC
Q 001055 320 DAHVGRQVFDRCIRGELSGKTRVLVTN 346 (1171)
Q Consensus 320 D~~~~~~l~~~l~~~~~~~~tvi~vtH 346 (1171)
|+.....- +.. ..+.|.|++||
T Consensus 426 ~al~~ak~---f~~--~~~itgvIlTK 447 (503)
T 2yhs_A 426 NAVSQAKL---FHE--AVGLTGITLTK 447 (503)
T ss_dssp HHHHHHHH---HHH--HTCCSEEEEEC
T ss_pred HHHHHHHH---HHh--hcCCCEEEEEc
Confidence 66532221 111 23678999999
No 253
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.01 E-value=1.6e-11 Score=139.86 Aligned_cols=143 Identities=17% Similarity=0.133 Sum_probs=89.2
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCC--------CCCCCcccee-----------------------c----CcEEEE---e
Q 001055 192 SLVAIVGGTGEGKTSLISAMLGEL--------PPVSDASAVI-----------------------R----GTVAYV---P 233 (1171)
Q Consensus 192 e~v~lvG~nGsGKSTLl~~l~G~~--------~~~~g~~~~~-----------------------~----~~i~~v---~ 233 (1171)
++++|+|+||||||||++.|+|.. .|+.|.+..- + ..++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999987 6777754220 1 125666 6
Q ss_pred cCCCC-CcccHHHHHhcCCCCCHHHHHHHH-------HHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhcc
Q 001055 234 QVSWI-FNATVRDNILFGSAFEPARYEKAI-------DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYS 305 (1171)
Q Consensus 234 Q~~~l-~~~Tv~eni~~g~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~ 305 (1171)
|++.+ ++.+|.||+.++.+ ..+.+.+ ....+...+..... ........+|||||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p---~~~~~~~~~~~~~~~~~~l~~~l~~vd~---~~~~~~~~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADP---GPIIQTFFSHEVLCQRYLLDGVIALVDA---VHADEQMNQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCH---HHHHHHHHHSHHHHHHEEEEEEEEEEET---TTHHHHHHHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCH---HHHHHHHhcCccccCeEEECCEEEEEEH---HHHHHHHhhchHHHHHHHhCCEEEEE
Confidence 77654 57888888877632 2111111 11111111110000 00000112689999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchhh
Q 001055 306 NSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFLS 352 (1171)
Q Consensus 306 ~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l~ 352 (1171)
+||++ ||| +.+.+.+... ..+.+++++||+...++
T Consensus 159 k~dl~--de~---------~~l~~~l~~l-~~~~~ii~~sh~~~~~~ 193 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARI-NARAPVYTVTHGDIDLG 193 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHH-CSSSCEEECCSSCCCGG
T ss_pred CcccC--CHH---------HHHHHHHHHh-CCCCeEEEecccCCCHH
Confidence 99987 998 4455544443 35789999999754443
No 254
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.00 E-value=2.5e-10 Score=128.27 Aligned_cols=138 Identities=14% Similarity=0.047 Sum_probs=94.3
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
+.++++++.|++. . ++++|+ +|++++++|+||+||||++..|++.+.+..|+|.+.+.|+......
T Consensus 77 ~~~~~l~~~~~~~--~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~-------- 142 (295)
T 1ls1_A 77 TVYEALKEALGGE--A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR-------- 142 (295)
T ss_dssp HHHHHHHHHTTSS--C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH--------
T ss_pred HHHHHHHHHHCCC--C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH--------
Confidence 3455666777542 2 678888 8999999999999999999999999999999999988776431000
Q ss_pred EcCCcccccccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEE
Q 001055 867 IPQSPVLFSGTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILV 946 (1171)
Q Consensus 867 v~Q~~~lf~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLl 946 (1171)
+ .+....+.. |++-.. .+......+.+|.+|+++...+++++|
T Consensus 143 -------------~-----------ql~~~~~~~-----------~l~~~~--~~~~~~p~~l~~~~l~~~~~~~~D~vi 185 (295)
T 1ls1_A 143 -------------E-----------QLRLLGEKV-----------GVPVLE--VMDGESPESIRRRVEEKARLEARDLIL 185 (295)
T ss_dssp -------------H-----------HHHHHHHHH-----------TCCEEE--CCTTCCHHHHHHHHHHHHHHHTCCEEE
T ss_pred -------------H-----------HHHHhcccC-----------CeEEEE--cCCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence 0 000000110 111110 001123345678999999889999999
Q ss_pred EecC-CcCCCHHHHHHHHHHHHHHcCCcEE
Q 001055 947 LDEA-TAAVDVRTDALIQKTIREEFKSCTM 975 (1171)
Q Consensus 947 LDEp-Ts~LD~~t~~~i~~~l~~~~~~~tv 975 (1171)
+||| ++++|......+.+..+....+.++
T Consensus 186 iDtpp~~~~d~~~~~~l~~~~~~~~~~~~~ 215 (295)
T 1ls1_A 186 VDTAGRLQIDEPLMGELARLKEVLGPDEVL 215 (295)
T ss_dssp EECCCCSSCCHHHHHHHHHHHHHHCCSEEE
T ss_pred EeCCCCccccHHHHHHHHHHhhhcCCCEEE
Confidence 9999 9999998888888877665333333
No 255
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.98 E-value=7.3e-11 Score=138.20 Aligned_cols=154 Identities=19% Similarity=0.193 Sum_probs=91.9
Q ss_pred cceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhc
Q 001055 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNL 882 (1171)
Q Consensus 803 ~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl 882 (1171)
--++++|+++.|++++|+|+||||||||+++|+|..+ .+.+.+... +...+++|+++.. ...++.++.
T Consensus 146 ~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftT-----l~p~~G~V~~~~~-~~~~l~Dtp 213 (416)
T 1udx_A 146 EKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTT-----LSPNLGVVEVSEE-ERFTLADIP 213 (416)
T ss_dssp CEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCS-----SCCEEEEEECSSS-CEEEEEECC
T ss_pred eEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccce-----ecceeeEEEecCc-ceEEEEecc
Confidence 3589999999999999999999999999999999843 345544433 2345777777640 011222221
Q ss_pred cCC------CCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCH
Q 001055 883 DPF------SEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDV 956 (1171)
Q Consensus 883 ~~~------~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~ 956 (1171)
-.. ...... ..+.+++ ++..+..+ ++. .....+||+|++|++++|++|..+|.||++ +.+|.
T Consensus 214 Gli~~a~~~~~L~~~-fl~~~er--a~~lL~vv--Dls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl 281 (416)
T 1udx_A 214 GIIEGASEGKGLGLE-FLRHIAR--TRVLLYVL--DAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDL 281 (416)
T ss_dssp CCCCCGGGSCCSCHH-HHHHHTS--SSEEEEEE--ETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTT
T ss_pred ccccchhhhhhhhHH-HHHHHHH--HHhhhEEe--CCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCCh
Confidence 110 011111 1111111 01011111 110 122346999999999999999999999999 99998
Q ss_pred HHHHHHHHHHHHHc-CCcEEEEEec
Q 001055 957 RTDALIQKTIREEF-KSCTMLIIAH 980 (1171)
Q Consensus 957 ~t~~~i~~~l~~~~-~~~tvi~vtH 980 (1171)
.....+.+...... .+.+++.||.
T Consensus 282 ~~~~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 282 LEEEAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp SCHHHHHHHHHHHHTTTSCEEECCT
T ss_pred hhHHHHHHHHHHHHhcCCeEEEEEC
Confidence 76633333333222 3556666654
No 256
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.98 E-value=1.5e-10 Score=135.48 Aligned_cols=151 Identities=17% Similarity=0.131 Sum_probs=92.1
Q ss_pred eeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcc-ceecCcEEEEecCCCCCcccHHHHHhcC------CCC
Q 001055 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS-AVIRGTVAYVPQVSWIFNATVRDNILFG------SAF 253 (1171)
Q Consensus 181 l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~-~~~~~~i~~v~Q~~~l~~~Tv~eni~~g------~~~ 253 (1171)
-++++|+++.|+.++|+|+||||||||+++|+|..+...+.. ..+...++++.|++. ...++.|+.-+. ...
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~-~~~~l~DtpGli~~a~~~~~L 225 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE-ERFTLADIPGIIEGASEGKGL 225 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSS-CEEEEEECCCCCCCGGGSCCS
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCc-ceEEEEeccccccchhhhhhh
Confidence 479999999999999999999999999999999854211111 112345788887641 111222222111 111
Q ss_pred CHHHHHHHHHHcC-chHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHH
Q 001055 254 EPARYEKAIDVTS-LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCI 332 (1171)
Q Consensus 254 ~~~~~~~~~~~~~-l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~ 332 (1171)
.. .+.+..+.+. +.+.++. + .....+||+||+|++++|++|...|.++++ |.+|+... ...+.+.
T Consensus 226 ~~-~fl~~~era~~lL~vvDl------s--~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~ 291 (416)
T 1udx_A 226 GL-EFLRHIARTRVLLYVLDA------A--DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALA 291 (416)
T ss_dssp CH-HHHHHHTSSSEEEEEEET------T--SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHH
T ss_pred hH-HHHHHHHHHHhhhEEeCC------c--cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHH
Confidence 11 1212121111 1111111 0 122357999999999999999999999999 99998765 3333333
Q ss_pred hh-ccCCCEEEEEcC
Q 001055 333 RG-ELSGKTRVLVTN 346 (1171)
Q Consensus 333 ~~-~~~~~tvi~vtH 346 (1171)
+. ...+.++++||.
T Consensus 292 ~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 292 DALAREGLAVLPVSA 306 (416)
T ss_dssp HHHHTTTSCEEECCT
T ss_pred HHHHhcCCeEEEEEC
Confidence 32 234667777763
No 257
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.96 E-value=2.2e-12 Score=140.02 Aligned_cols=148 Identities=7% Similarity=0.070 Sum_probs=56.4
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHh-cCCCCCCceEEECCEecCCCChHH-HhhheEEEcCCcccccc-cH
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF-RIVELERGRILIDGFDIAKFGLMD-LRKILGIIPQSPVLFSG-TV 878 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~-g~~~p~~G~I~i~g~~i~~~~~~~-~r~~i~~v~Q~~~lf~~-tv 878 (1171)
...+++||++++|+++||+||||||||||+++|+ |+++| + .++.++....+.. .+..++|.++++..|.. +.
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~----~-~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~ 89 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN----I-VKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCS 89 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C----E-EECCCEESSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC----c-ccccccCCCCCCccccCCCeEEEecHHHhhhhhh
Confidence 4678999999999999999999999999999999 99843 1 2222222111111 11234466666554432 33
Q ss_pred Hhhcc----CCCC---CCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCCh--hHHHHH-HHH-HHhccCCCEEEE
Q 001055 879 RFNLD----PFSE---HSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSV--GQRQLL-SLS-RALLRRSKILVL 947 (1171)
Q Consensus 879 ~~nl~----~~~~---~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSg--Gqkqrl-~lA-rall~~p~iLlL 947 (1171)
.+++. .+.. ...+.+.+.++.. ....++ ..+.| .-++++ .-+ ..++..|+..++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------------~~vild---~~~~g~~~~~~~~~~~~~~v~v~~~~~~~l 154 (231)
T 3lnc_A 90 NGEIIEHAEVFGNFYGVPRKNLEDNVDKG------------VSTLLV---IDWQGAFKFMEMMREHVVSIFIMPPSMEEL 154 (231)
T ss_dssp TTCEEEEEEETTEEEEEECTTHHHHHHHT------------CEEEEE---CCHHHHHHHHHHSGGGEEEEEEECSCHHHH
T ss_pred cCceehhhhhccccCCCCHHHHHHHHHcC------------CeEEEE---cCHHHHHHHHHhcCCCeEEEEEECCcHHHH
Confidence 33332 1110 0112233333221 000000 00111 112332 112 234567788888
Q ss_pred ecCCcCCCHHHHHHHHHHHHHH
Q 001055 948 DEATAAVDVRTDALIQKTIREE 969 (1171)
Q Consensus 948 DEpTs~LD~~t~~~i~~~l~~~ 969 (1171)
+|+..+.|..+++.+.+.|...
T Consensus 155 ~~Rl~~R~~~~~~~i~~rl~~~ 176 (231)
T 3lnc_A 155 RRRLCGRRADDSEVVEARLKGA 176 (231)
T ss_dssp HHC--------------CHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHH
Confidence 9999999988888887777653
No 258
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.96 E-value=2.1e-10 Score=129.57 Aligned_cols=101 Identities=16% Similarity=0.136 Sum_probs=66.8
Q ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEE---CCEecCCCChHHHhhheEEEcCCcc-------------
Q 001055 809 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI---DGFDIAKFGLMDLRKILGIIPQSPV------------- 872 (1171)
Q Consensus 809 ~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i---~g~~i~~~~~~~~r~~i~~v~Q~~~------------- 872 (1171)
|++.+|++++|+||||||||||+++|.|+..|++|+|.+ +|.++.........+.+|+|+|.|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 455679999999999999999999999999999999999 8998876542211246999999985
Q ss_pred ---cccc-cHHhhccCCC----CCCHHHHHHHHHHhcH-HHHHHHcc
Q 001055 873 ---LFSG-TVRFNLDPFS----EHSDADLWEALERAHL-KDAIRRNS 910 (1171)
Q Consensus 873 ---lf~~-tv~~nl~~~~----~~~~~~i~~~l~~~~~-~~~i~~lp 910 (1171)
+|.. |+ +|+.+.. ......+.++++..++ .+..++.|
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 3543 77 8887531 1224567888888888 45555555
No 259
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.95 E-value=2.2e-11 Score=139.62 Aligned_cols=162 Identities=18% Similarity=0.163 Sum_probs=103.3
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce----------------ec
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV----------------IR 226 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~----------------~~ 226 (1171)
|+++++++.|.. +.+|+++||++++|++++|+|+||||||||+++|+|.+.|++|.+.. .+
T Consensus 30 ie~~~~~~~~~~---~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~ 106 (337)
T 2qm8_A 30 AESRRADHRAAV---RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK 106 (337)
T ss_dssp HTCSSHHHHHHH---HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCG
T ss_pred HeeCCcccccCh---HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHh
Confidence 445566677742 46899999999999999999999999999999999998887665421 23
Q ss_pred CcEEEEecCCCCCc----------c---cHHHHHh-c---CCC----------CCHHHHHHHHHHcCc---------hHH
Q 001055 227 GTVAYVPQVSWIFN----------A---TVRDNIL-F---GSA----------FEPARYEKAIDVTSL---------QHD 270 (1171)
Q Consensus 227 ~~i~~v~Q~~~l~~----------~---Tv~eni~-~---g~~----------~~~~~~~~~~~~~~l---------~~~ 270 (1171)
..+++++|++.+|. + +++|.+. + +.+ .....+ .+.+.+ ...
T Consensus 107 ~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v---~~~~d~vl~v~d~~~~~~ 183 (337)
T 2qm8_A 107 TRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAV---ADLTDFFLVLMLPGAGDE 183 (337)
T ss_dssp GGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHH---HTTSSEEEEEECSCC---
T ss_pred hhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhH---HhhCCEEEEEEcCCCccc
Confidence 35899999987752 1 2333321 0 100 011111 010000 000
Q ss_pred Hh-------cCCCC-CccccCC-CCCccChHHHHHHHHHHHhcc------CCCEEEEeCcCCCCCHHHHHHHHHHHHhh
Q 001055 271 LD-------LLPGG-DVTEIGE-RGVNISGGQKQRVSMARAVYS------NSDVFIFDDPLSALDAHVGRQVFDRCIRG 334 (1171)
Q Consensus 271 ~~-------~~~~~-~~~~i~~-~g~~LSGGqrqRv~LAraL~~------~~~vllLDEpts~LD~~~~~~l~~~l~~~ 334 (1171)
.. ..+.. -.+.++. ....+|+|++|++..|++++. +|+++. +|++|......+++.+.+.
T Consensus 184 ~~~i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 184 LQGIKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp ---CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 00 00000 0011221 124689999999999999987 688876 9999999999999877553
No 260
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.94 E-value=3e-12 Score=148.44 Aligned_cols=169 Identities=11% Similarity=0.087 Sum_probs=110.4
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhc------------CCCCCCceEEECCEecCCCC-hHHHhhhe---EEEcCCccc
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFR------------IVELERGRILIDGFDIAKFG-LMDLRKIL---GIIPQSPVL 873 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g------------~~~p~~G~I~i~g~~i~~~~-~~~~r~~i---~~v~Q~~~l 873 (1171)
.+++|.++||+|+||||||||+++|+| ..+|+.|.|.+.|..+..+. ...-++.+ .++.+.|.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999 67899999999874321100 00001222 367777766
Q ss_pred ccc-cHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCC--CEEEEecC
Q 001055 874 FSG-TVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRS--KILVLDEA 950 (1171)
Q Consensus 874 f~~-tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p--~iLlLDEp 950 (1171)
..+ +..+++. . .....++.+.. +-.. ++..-+.....+||+. +| +++++|||
T Consensus 96 ~~~~s~~e~L~------~-~fl~~ir~~d~---il~V---vd~~~d~~i~~v~~~~------------dP~~di~ildee 150 (392)
T 1ni3_A 96 TKGASTGVGLG------N-AFLSHVRAVDA---IYQV---VRAFDDAEIIHVEGDV------------DPIRDLSIIVDE 150 (392)
T ss_dssp CCCCCSSSSSC------H-HHHHHHTTCSE---EEEE---EECCCTTCSSCCSSSS------------CHHHHHHHHHHH
T ss_pred ccCCcHHHHHH------H-HHHHHHHHHHH---HHHH---Hhccccceeeeecccc------------Ccchhhhhchhh
Confidence 644 4444431 0 11111111100 0000 0000012233456552 89 99999999
Q ss_pred CcCCCHHHHHHHHHHHHHH-cC-CcEEEEEecChhhhhh-cCEEE-EEeCc-EEEEecCh
Q 001055 951 TAAVDVRTDALIQKTIREE-FK-SCTMLIIAHRLNTIID-CDRIL-LLDSG-RVLEYDTP 1005 (1171)
Q Consensus 951 Ts~LD~~t~~~i~~~l~~~-~~-~~tvi~vtH~~~~~~~-~d~i~-vl~~G-~i~~~g~~ 1005 (1171)
+.++|++..+..++.+... .. +.|+ ++|.+..+.. ||++. +|++| +++..|+.
T Consensus 151 l~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 151 LLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 9999999999999999886 54 4554 3999999887 99999 99999 88766654
No 261
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.93 E-value=3.7e-12 Score=149.41 Aligned_cols=116 Identities=15% Similarity=0.119 Sum_probs=78.5
Q ss_pred ceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee----------------cCcEEEEe---------c
Q 001055 180 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI----------------RGTVAYVP---------Q 234 (1171)
Q Consensus 180 ~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~----------------~~~i~~v~---------Q 234 (1171)
+|+++ + .++|++++|+|||||||||||++|+|+++|++|.+... +..+++.+ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 56666 4 37999999999999999999999999999987754321 12244443 8
Q ss_pred CCCC--Cc-----ccHHHHHhcCC----------CCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHH
Q 001055 235 VSWI--FN-----ATVRDNILFGS----------AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV 297 (1171)
Q Consensus 235 ~~~l--~~-----~Tv~eni~~g~----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv 297 (1171)
+|.+ +. .|+.+++.++. ..+.......+...++.... ...+|||||+||
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~-------------~~~~LSgg~~QR- 301 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL-------------ISSSLLGVLAQR- 301 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH-------------HHHHEEEEEEEE-
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH-------------HHHHHHHHHHHH-
Confidence 8865 22 48888886531 11112222234444443321 124799999999
Q ss_pred HHHHHhccCCCEEEE
Q 001055 298 SMARAVYSNSDVFIF 312 (1171)
Q Consensus 298 ~LAraL~~~~~vllL 312 (1171)
|||+|+.+|++..-
T Consensus 302 -LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 302 -LVRTLCPDCKEPYE 315 (418)
T ss_dssp -EEEEECTTTCEEEE
T ss_pred -hhhhhcCCCCccCC
Confidence 99999999998763
No 262
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.93 E-value=8.8e-12 Score=150.06 Aligned_cols=162 Identities=12% Similarity=0.122 Sum_probs=100.9
Q ss_pred CceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee---------cCcEEEEecCCCCC-cccHHHHHh
Q 001055 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI---------RGTVAYVPQVSWIF-NATVRDNIL 248 (1171)
Q Consensus 179 ~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~---------~~~i~~v~Q~~~l~-~~Tv~eni~ 248 (1171)
.+++++++.+++|+.++|+||||||||||+++|+|+++|+.|.+..- ...+++..|..... ..|..+++.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~ 327 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLR 327 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHH
Confidence 46889999999999999999999999999999999999987654321 12366677665422 246666654
Q ss_pred cC-----------CCCCHHHHHHHHHHc--Cc-----------hHHH---hcCCCCCccccC-------CCCCccChHHH
Q 001055 249 FG-----------SAFEPARYEKAIDVT--SL-----------QHDL---DLLPGGDVTEIG-------ERGVNISGGQK 294 (1171)
Q Consensus 249 ~g-----------~~~~~~~~~~~~~~~--~l-----------~~~~---~~~~~~~~~~i~-------~~g~~LSGGqr 294 (1171)
.. .-.+.+ ...+++.+ +. ...+ ...+.+....+. .....+|||||
T Consensus 328 ~~LR~~PD~iivgEir~~E-~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~ 406 (511)
T 2oap_1 328 AALRQRPDYIIVGEVRGRE-AQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTR 406 (511)
T ss_dssp TTGGGCCSEEEESCCCSTH-HHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCE
T ss_pred HhhccCCCeEEeCCcCHHH-HHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCc
Confidence 22 111122 22222221 10 1111 111111111110 12236899999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEE--EcCCcchhhh
Q 001055 295 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVL--VTNQLHFLSQ 353 (1171)
Q Consensus 295 qRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~--vtH~~~~l~~ 353 (1171)
||+++|. + | |+||||...+.+++.+.+....++|+++ +||+++.+..
T Consensus 407 ~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~ 455 (511)
T 2oap_1 407 LRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMAD 455 (511)
T ss_dssp EEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHH
T ss_pred eEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHH
Confidence 9987651 1 6 9999998777666655554455889875 8999988754
No 263
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.89 E-value=4.6e-09 Score=122.45 Aligned_cols=150 Identities=15% Similarity=0.214 Sum_probs=86.7
Q ss_pred EecCCCEEEEEcCCCccHHHHHH--HHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHH
Q 001055 187 DIPVGSLVAIVGGTGEGKTSLIS--AMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDV 264 (1171)
Q Consensus 187 ~i~~Ge~v~lvG~nGsGKSTLl~--~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~ 264 (1171)
.|++|++++|+||||||||||++ ++.+..+++.|+. .+.+.|+.-+..+ ...+.....+.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~---~~~viyid~E~~~---------------~~~rl~~~a~~ 235 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGG---EGKCLYIDTEGTF---------------RPVRLVSIAQR 235 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCC---SSEEEEEESSSCC---------------CHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCC---CCcEEEEeCCCcc---------------CHHHHHHHHHH
Confidence 68999999999999999999999 4567777765531 2345565544321 22233333333
Q ss_pred cCchHH--HhcCCCCCccccCCCCCccCh-HHHHHHHHHHHhc--cCCCEEEEeCcCCCCCHHHH------------HHH
Q 001055 265 TSLQHD--LDLLPGGDVTEIGERGVNISG-GQKQRVSMARAVY--SNSDVFIFDDPLSALDAHVG------------RQV 327 (1171)
Q Consensus 265 ~~l~~~--~~~~~~~~~~~i~~~g~~LSG-GqrqRv~LAraL~--~~~~vllLDEpts~LD~~~~------------~~l 327 (1171)
.++... ++... +. ...++ .+.+.+.-++.++ .+|+++++|||++.+|+... ..+
T Consensus 236 ~gl~~~~vleni~------~~---~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~i 306 (400)
T 3lda_A 236 FGLDPDDALNNVA------YA---RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKF 306 (400)
T ss_dssp TTCCHHHHHHTEE------EE---ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHH
T ss_pred cCCChHhHhhcEE------Ee---ccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHH
Confidence 333211 11100 00 01122 2344444343433 47999999999999997533 445
Q ss_pred HHHHHhhcc-CCCEEEEEcCCcc-------------------hhhh-cCEEEEEeCC
Q 001055 328 FDRCIRGEL-SGKTRVLVTNQLH-------------------FLSQ-VDRIILVHEG 363 (1171)
Q Consensus 328 ~~~l~~~~~-~~~tvi~vtH~~~-------------------~l~~-~d~i~~l~~G 363 (1171)
.+.|.+..+ .|.|+|+|+|... .+.+ +|.++.|+++
T Consensus 307 l~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 307 MRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp HHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred HHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 555555433 3899999999832 1233 5888888765
No 264
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.87 E-value=6.5e-11 Score=134.63 Aligned_cols=135 Identities=17% Similarity=0.084 Sum_probs=83.3
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee------------------cCcEEEEecCCCCC-cccHHHHH
Q 001055 187 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------------RGTVAYVPQVSWIF-NATVRDNI 247 (1171)
Q Consensus 187 ~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~------------------~~~i~~v~Q~~~l~-~~Tv~eni 247 (1171)
..++|++++|+||||||||||++.|+|.++|++|.+... +-.+.+++|...++ ..||++|+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 347899999999999999999999999999987765321 11366999988776 57999999
Q ss_pred hcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHH
Q 001055 248 LFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQV 327 (1171)
Q Consensus 248 ~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l 327 (1171)
.++.. ..... -.++. ++... .-..=.++--.++|++..++.+++||.++. .|.... +
T Consensus 205 ~~~~~----------~~~d~-vliDt-aG~~~--------~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~~--~ 261 (328)
T 3e70_C 205 QHAKA----------RGIDV-VLIDT-AGRSE--------TNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVEQ--A 261 (328)
T ss_dssp HHHHH----------HTCSE-EEEEE-CCSCC--------TTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHHH--H
T ss_pred HHHHh----------ccchh-hHHhh-ccchh--------HHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHHH--H
Confidence 75310 00000 00111 11000 000011222248999999888999995554 433321 1
Q ss_pred HHHHHhhccCCCEEEEEcCC
Q 001055 328 FDRCIRGELSGKTRVLVTNQ 347 (1171)
Q Consensus 328 ~~~l~~~~~~~~tvi~vtH~ 347 (1171)
..+. ...+.|.|++||.
T Consensus 262 -~~~~--~~~~it~iilTKl 278 (328)
T 3e70_C 262 -RQFN--EAVKIDGIILTKL 278 (328)
T ss_dssp -HHHH--HHSCCCEEEEECG
T ss_pred -HHHH--HhcCCCEEEEeCc
Confidence 1111 1236899999994
No 265
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.85 E-value=5.5e-09 Score=117.60 Aligned_cols=98 Identities=19% Similarity=0.224 Sum_probs=72.2
Q ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCC
Q 001055 807 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFS 886 (1171)
Q Consensus 807 vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~ 886 (1171)
+++..++|++++|+|+|||||||++..|++.+.+.+|+|.+.+.|.... ...+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~---------------------~a~e------ 149 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA---------------------AAIE------ 149 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH---------------------HHHH------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH---------------------HHHH------
Confidence 3445678999999999999999999999999999999999987664220 0011
Q ss_pred CCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHH---HHHHHhccCCCEEEEecCCc
Q 001055 887 EHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLL---SLSRALLRRSKILVLDEATA 952 (1171)
Q Consensus 887 ~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl---~lArall~~p~iLlLDEpTs 952 (1171)
++ ..+.+.. |++. ...+|||+.|++ ++++++.++|+++|+|||..
T Consensus 150 -----qL---------~~~~~~~--gl~~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 150 -----QL---------KIWGERV--GATV-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp -----HH---------HHHHHHH--TCEE-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred -----HH---------HHHHHHc--CCcE-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 11 1122221 2211 124789999999 99999999999999999974
No 266
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.84 E-value=1.3e-09 Score=129.26 Aligned_cols=65 Identities=17% Similarity=0.138 Sum_probs=56.2
Q ss_pred EEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCCh
Q 001055 788 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL 857 (1171)
Q Consensus 788 ~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~ 857 (1171)
++.++++..- .+|+|+||+|++ +++||+||||||||||+++|+|+++|++|+|.++|.++...+.
T Consensus 8 ~l~~l~~~~~----~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~ 72 (483)
T 3euj_A 8 KFRSLTLINW----NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTS 72 (483)
T ss_dssp EEEEEEEEEE----TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCC
T ss_pred ceeEEEEecc----ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCch
Confidence 4556655431 489999999999 9999999999999999999999999999999999998875543
No 267
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.84 E-value=2.5e-09 Score=120.15 Aligned_cols=138 Identities=16% Similarity=0.163 Sum_probs=87.1
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCCCCCHH
Q 001055 812 PPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEHSDA 891 (1171)
Q Consensus 812 ~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~~~~ 891 (1171)
.+|++++++|+||+||||++..|++.+.+++|. ++.++.+|+. ..+..+++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~------------------~V~lv~~D~~--r~~a~eqL~~------- 155 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK------------------KIAFITTDTY--RIAAVEQLKT------- 155 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC------------------CEEEEECCCS--STTHHHHHHH-------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC------------------EEEEEecCcc--cchHHHHHHH-------
Confidence 479999999999999999999999999987781 3445555542 2222222211
Q ss_pred HHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHc-
Q 001055 892 DLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEF- 970 (1171)
Q Consensus 892 ~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~- 970 (1171)
.. +. .|+.... ..+ +..-+.+++++ ++|+++|+| |+|+|+.....+.+..+-..
T Consensus 156 ----~~---------~~--~gl~~~~-----~~~-~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~ 210 (296)
T 2px0_A 156 ----YA---------EL--LQAPLEV-----CYT-KEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIPF 210 (296)
T ss_dssp ----HH---------TT--TTCCCCB-----CSS-HHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSCC
T ss_pred ----HH---------Hh--cCCCeEe-----cCC-HHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHhh
Confidence 00 11 1111100 112 33456667754 999999999 99999877766665443322
Q ss_pred --CCcEEEEE--ecChhhhhh-cCEEEEEeCcEEEE
Q 001055 971 --KSCTMLII--AHRLNTIID-CDRILLLDSGRVLE 1001 (1171)
Q Consensus 971 --~~~tvi~v--tH~~~~~~~-~d~i~vl~~G~i~~ 1001 (1171)
...+++++ +|....+.. |+++..+..|.++.
T Consensus 211 ~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 211 ESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp CTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred cCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 23445555 899887776 77766666666664
No 268
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.83 E-value=3.4e-09 Score=122.26 Aligned_cols=129 Identities=11% Similarity=0.110 Sum_probs=74.1
Q ss_pred EEEEEcCCCccHHHHHHHHhc-CCCCCCCccce----------ecCcEEEEecCCCCC-cccHHHHHhcCCCCCHHHHHH
Q 001055 193 LVAIVGGTGEGKTSLISAMLG-ELPPVSDASAV----------IRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEK 260 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G-~~~~~~g~~~~----------~~~~i~~v~Q~~~l~-~~Tv~eni~~g~~~~~~~~~~ 260 (1171)
.+.|+||||+||||++++++| ++.|+.|.+.. .+..+++++|.+.+. +.+-. +. .+.....+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~ 111 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDM-----GN-NDRIVIQE 111 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC----------CCHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhc-----CC-cchHHHHH
Confidence 389999999999999999999 67777654321 123478888877652 22100 00 11112222
Q ss_pred HHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCE
Q 001055 261 AIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKT 340 (1171)
Q Consensus 261 ~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~t 340 (1171)
.++... ...+ +.+.. .||| +..+|+++++|||++ ||+.....+.+.+.. ...+.+
T Consensus 112 ~i~~~~-----~~~~------~~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~-~~~~~~ 166 (354)
T 1sxj_E 112 LLKEVA-----QMEQ------VDFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEK-YSKNIR 166 (354)
T ss_dssp HHHHHT-----TTTC------------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHH-STTTEE
T ss_pred HHHHHH-----Hhcc------ccccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHh-hcCCCE
Confidence 222211 0000 00000 4566 788999999999999 999999999886544 335689
Q ss_pred EEEEcCCcchhh
Q 001055 341 RVLVTNQLHFLS 352 (1171)
Q Consensus 341 vi~vtH~~~~l~ 352 (1171)
+|++||+++.+.
T Consensus 167 ~Il~t~~~~~l~ 178 (354)
T 1sxj_E 167 LIMVCDSMSPII 178 (354)
T ss_dssp EEEEESCSCSSC
T ss_pred EEEEeCCHHHHH
Confidence 999999987653
No 269
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.78 E-value=1e-09 Score=123.83 Aligned_cols=103 Identities=15% Similarity=0.163 Sum_probs=73.9
Q ss_pred EEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce--------------ec-CcEEEEecCCCC------CcccHH
Q 001055 186 LDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IR-GTVAYVPQVSWI------FNATVR 244 (1171)
Q Consensus 186 l~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------~~-~~i~~v~Q~~~l------~~~Tv~ 244 (1171)
+++.+|++++|+||||||||||+++|+ ..+|++|.+.. .+ ..+||++|.|.+ +..|+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 455679999999999999999999999 99998876543 11 247999999854 24688
Q ss_pred HHH--hcCC------------CC--CHHHHHHHHHHcCchH-HHhcCCCCCccccCCCCCccChHHHHHHHHHH
Q 001055 245 DNI--LFGS------------AF--EPARYEKAIDVTSLQH-DLDLLPGGDVTEIGERGVNISGGQKQRVSMAR 301 (1171)
Q Consensus 245 eni--~~g~------------~~--~~~~~~~~~~~~~l~~-~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAr 301 (1171)
||+ .|+. .. ...++.++++..++.. ..+..+ ..|||.++|++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----------KIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----------HHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----------HHHHHHHHHHHHHhc
Confidence 888 4530 11 1235667777777764 333333 479999999999987
No 270
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.78 E-value=1.3e-09 Score=115.47 Aligned_cols=72 Identities=15% Similarity=0.080 Sum_probs=56.5
Q ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccc-cHHhhcc
Q 001055 808 SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG-TVRFNLD 883 (1171)
Q Consensus 808 s~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~~nl~ 883 (1171)
|+++++|+++||+||||||||||+++|+|++ | .+.+++.++...+....+..++|+||++..|.. ++.+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL-A---EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS-S---SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC-C---CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 5778899999999999999999999999996 3 588888887766655557789999999987755 6665553
No 271
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.74 E-value=6.8e-09 Score=113.04 Aligned_cols=166 Identities=16% Similarity=0.187 Sum_probs=88.4
Q ss_pred Ccceee-eEEEcCCCEEEEECCCCCcHHHHHH-HHhcCCCCCCceEEECCEecCCCChHHHh---hheEEEcCCcccc-c
Q 001055 802 PVLHGL-SFTIPPSDKVGIVGRTGAGKSSMLN-TLFRIVELERGRILIDGFDIAKFGLMDLR---KILGIIPQSPVLF-S 875 (1171)
Q Consensus 802 ~~l~~v-s~~i~~Ge~v~ivG~nGsGKSTLl~-~l~g~~~p~~G~I~i~g~~i~~~~~~~~r---~~i~~v~Q~~~lf-~ 875 (1171)
+.|+++ .-.+++|+.++|+||||||||||+. ++.+..++..+.+++++.. +...++ ..+|+.+|+.... +
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~~~~ 85 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEEKGM 85 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHHHTS
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhhCCc
Confidence 356666 5678999999999999999999965 4455555444555555432 333332 2355555543110 0
Q ss_pred ccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc--cCCCEEEEecCCcC
Q 001055 876 GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL--RRSKILVLDEATAA 953 (1171)
Q Consensus 876 ~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall--~~p~iLlLDEpTs~ 953 (1171)
-++.+ .+... .+ ..+. .+...... +....+.+..++.++ .+|+++++|+|+..
T Consensus 86 l~~~~---~~~~~-----------~~------~~~~-~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l 140 (247)
T 2dr3_A 86 FAMVD---AFTAG-----------IG------KSKE-YEKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTTL 140 (247)
T ss_dssp EEEEE---CSTTT-----------TC------C--C-CCSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGGG
T ss_pred EEEEe---cchhh-----------cc------cccc-cccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchHh
Confidence 01111 00000 00 0000 00000000 111222333333333 47999999999998
Q ss_pred C--CHHHHHHHHHHHHHHc--CCcEEEEEecChhh--------hhh-cCEEEEEeC
Q 001055 954 V--DVRTDALIQKTIREEF--KSCTMLIIAHRLNT--------IID-CDRILLLDS 996 (1171)
Q Consensus 954 L--D~~t~~~i~~~l~~~~--~~~tvi~vtH~~~~--------~~~-~d~i~vl~~ 996 (1171)
+ |+...+.....|.+.. .++|||+++|.... +.. ||.|+.|+.
T Consensus 141 ~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 141 YINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp TTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 7 5533333333333332 47999999998765 334 999999964
No 272
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.73 E-value=8.1e-12 Score=143.40 Aligned_cols=170 Identities=15% Similarity=0.107 Sum_probs=104.6
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCC-------CEEEEECCCCCcHHHHHHHHhcCC----CCCCceEEECCEecCCC
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPS-------DKVGIVGRTGAGKSSMLNTLFRIV----ELERGRILIDGFDIAKF 855 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~G-------e~v~ivG~nGsGKSTLl~~l~g~~----~p~~G~I~i~g~~i~~~ 855 (1171)
++.++++..|+.. .+++++++.+.+| +.++|+||||+|||||+++|+|.+ .|++|.+..++.++...
T Consensus 19 lr~~~l~~~~g~~--~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~ 96 (334)
T 1in4_A 19 LRPKSLDEFIGQE--NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAI 96 (334)
T ss_dssp TSCSSGGGCCSCH--HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHH
T ss_pred cCCccHHHccCcH--HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHH
Confidence 3444566666543 5899999999877 899999999999999999999998 77888887766554321
Q ss_pred ChHHHhhheEEEcCCcccccccHHhhccCCC-CC--C----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhH
Q 001055 856 GLMDLRKILGIIPQSPVLFSGTVRFNLDPFS-EH--S----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQ 928 (1171)
Q Consensus 856 ~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~-~~--~----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGq 928 (1171)
.....+..|.+++|...++. ++.+++...- .. . ..... ..+...+. +.++.. .......||+|+
T Consensus 97 ~~~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~-----~~i~~~l~--~~~li~-at~~~~~Ls~~l 167 (334)
T 1in4_A 97 LTSLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPSA-----KSIRIDIQ--PFTLVG-ATTRSGLLSSPL 167 (334)
T ss_dssp HHHCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC--------------------C--CCEEEE-EESCGGGSCHHH
T ss_pred HHHccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCccc-----ccccccCC--CeEEEE-ecCCcccCCHHH
Confidence 11111456999999887764 6666653110 00 0 00000 00111111 123322 333445799999
Q ss_pred HHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhhh
Q 001055 929 RQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTII 986 (1171)
Q Consensus 929 kqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~~ 986 (1171)
|||++++ .+||+.+...+.+.|++..... -++|+.+.+.
T Consensus 168 ~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~---~~~~~~~~~~ 206 (334)
T 1in4_A 168 RSRFGII----------------LELDFYTVKELKEIIKRAASLM---DVEIEDAAAE 206 (334)
T ss_dssp HTTCSEE----------------EECCCCCHHHHHHHHHHHHHHT---TCCBCHHHHH
T ss_pred HHhcCce----------------eeCCCCCHHHHHHHHHHHHHHc---CCCcCHHHHH
Confidence 9998654 6788888888888887653210 1356555443
No 273
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.68 E-value=1.2e-09 Score=122.62 Aligned_cols=71 Identities=21% Similarity=0.215 Sum_probs=42.6
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEE---CCEecCCCChHHHhhheEEEcCCccccc-----ccHHhh
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI---DGFDIAKFGLMDLRKILGIIPQSPVLFS-----GTVRFN 881 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i---~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-----~tv~~n 881 (1171)
++.+|++++|+||||+|||||+++|.|+..|..|+|.+ +|+++.... ...+..+|+++|.|.+.. .|+ +|
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-HH
Confidence 45689999999999999999999999999999999999 888776532 122223899999997653 367 77
Q ss_pred c
Q 001055 882 L 882 (1171)
Q Consensus 882 l 882 (1171)
+
T Consensus 247 l 247 (307)
T 1t9h_A 247 L 247 (307)
T ss_dssp H
T ss_pred H
Confidence 7
No 274
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.67 E-value=1.3e-10 Score=134.67 Aligned_cols=157 Identities=13% Similarity=0.142 Sum_probs=98.8
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHhcC------------CCCCCCccceec----------------CcEEEEecCCCC
Q 001055 187 DIPVGSLVAIVGGTGEGKTSLISAMLGE------------LPPVSDASAVIR----------------GTVAYVPQVSWI 238 (1171)
Q Consensus 187 ~i~~Ge~v~lvG~nGsGKSTLl~~l~G~------------~~~~~g~~~~~~----------------~~i~~v~Q~~~l 238 (1171)
.+++|.+++|+|+||+|||||+++|+|. ..|+.|.+.... +...++.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 4578999999999999999999999993 334444332211 012456666655
Q ss_pred C-cccHHHHHhcCCCCCHHHHHHHHHHcC-chHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCC--CEEEEeC
Q 001055 239 F-NATVRDNILFGSAFEPARYEKAIDVTS-LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNS--DVFIFDD 314 (1171)
Q Consensus 239 ~-~~Tv~eni~~g~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~--~vllLDE 314 (1171)
. ..|..|++ . ..+...++.+. +.+.++... ......+||+. +| ++.++||
T Consensus 96 ~~~~s~~e~L------~-~~fl~~ir~~d~il~Vvd~~~-------d~~i~~v~~~~------------dP~~di~ilde 149 (392)
T 1ni3_A 96 TKGASTGVGL------G-NAFLSHVRAVDAIYQVVRAFD-------DAEIIHVEGDV------------DPIRDLSIIVD 149 (392)
T ss_dssp CCCCCSSSSS------C-HHHHHHHTTCSEEEEEEECCC-------TTCSSCCSSSS------------CHHHHHHHHHH
T ss_pred ccCCcHHHHH------H-HHHHHHHHHHHHHHHHHhccc-------cceeeeecccc------------Ccchhhhhchh
Confidence 4 22332222 1 11222222221 111112111 11223456653 89 9999999
Q ss_pred cCCCCCHHHHHHHHHHHHhh-ccCCCEEEEEcCCcchhhh-cCEEE-EEeCC-EEEEecCh
Q 001055 315 PLSALDAHVGRQVFDRCIRG-ELSGKTRVLVTNQLHFLSQ-VDRII-LVHEG-MVKEEGTF 371 (1171)
Q Consensus 315 pts~LD~~~~~~l~~~l~~~-~~~~~tvi~vtH~~~~l~~-~d~i~-~l~~G-~i~~~g~~ 371 (1171)
|++.+|+...+..++.+.+. ...|+|+ ++|....+.. ||++. .|++| +++..|+.
T Consensus 150 el~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 150 ELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 99999999999988877666 5556775 3999887765 69998 89999 87765544
No 275
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.67 E-value=2.7e-09 Score=111.87 Aligned_cols=142 Identities=18% Similarity=0.125 Sum_probs=77.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCC-----------CCceEEECCEecCC--CChHHHhhheEEEcCCccccc--ccHHh
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIVEL-----------ERGRILIDGFDIAK--FGLMDLRKILGIIPQSPVLFS--GTVRF 880 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~~p-----------~~G~I~i~g~~i~~--~~~~~~r~~i~~v~Q~~~lf~--~tv~~ 880 (1171)
+++|+|+||||||||++.+.|...| ..|+|.++|.++.- ++....++..++++|...-.. -+|.+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 7999999999999999999998765 57999999976531 111111122233332210000 01111
Q ss_pred hccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcc-hhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHH
Q 001055 881 NLDPFSEHSDADLWEALERAHLKDAIRRNSLGLD-AQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTD 959 (1171)
Q Consensus 881 nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~-~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~ 959 (1171)
+.+. .+-+.+...+. +.-...+.+.. -.+.... .|..-..+.+.+|++++.+|+++++| ||++|....
T Consensus 111 ~~~~---~s~~~~~~~~~-----~~~~~~~~~~~i~~v~nK~-Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v 179 (191)
T 1oix_A 111 IAKH---LTYENVERWLK-----ELRDHADSNIVIMLVGNKS-DLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNV 179 (191)
T ss_dssp TTCH---HHHHTHHHHHH-----HHHHHSCTTCEEEEEEECG-GGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTH
T ss_pred CcCH---HHHHHHHHHHH-----HHHHhcCCCCcEEEEEECc-ccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCH
Confidence 1110 00001111111 00000011100 0111111 13222234578899999999999999 999999999
Q ss_pred HHHHHHHHH
Q 001055 960 ALIQKTIRE 968 (1171)
Q Consensus 960 ~~i~~~l~~ 968 (1171)
..+.+.|.+
T Consensus 180 ~~l~~~l~~ 188 (191)
T 1oix_A 180 EAAFQTILT 188 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988865
No 276
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.66 E-value=8.2e-11 Score=131.37 Aligned_cols=131 Identities=15% Similarity=0.150 Sum_probs=91.2
Q ss_pred EEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEE
Q 001055 788 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 867 (1171)
Q Consensus 788 ~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 867 (1171)
+++++.+.|.. +.+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.++........++.++++
T Consensus 51 ~l~~l~~~~~~--~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~ 124 (278)
T 1iy2_A 51 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 124 (278)
T ss_dssp HHHHHHHHHHC--HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHH
T ss_pred HHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHH
Confidence 45666666753 25899999999999 99999999999999999999885 79999998776544444456678888
Q ss_pred cCCcc-ccc-ccHHhhccCCCCC--C-----HHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 868 PQSPV-LFS-GTVRFNLDPFSEH--S-----DADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 868 ~Q~~~-lf~-~tv~~nl~~~~~~--~-----~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
+|+.. .+. .++.++++..... . .++..+. +.+++ ..|||||+||+.+++|+
T Consensus 125 ~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~-----~~~ll---------------~~lsgg~~~~~~i~~a~ 184 (278)
T 1iy2_A 125 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT-----LNQLL---------------VEMDGFEKDTAIVVMAA 184 (278)
T ss_dssp HHHHHTSCSEEEEEETHHHHHCC--------CHHHHHH-----HHHHH---------------HHHTTCCTTCCEEEEEE
T ss_pred HHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHH-----HHHHH---------------HHHhCCCCCCCEEEEEe
Confidence 88764 332 2556666421110 0 0111111 11111 24899999999999999
Q ss_pred ccCCCE
Q 001055 939 LRRSKI 944 (1171)
Q Consensus 939 l~~p~i 944 (1171)
..+|++
T Consensus 185 t~~p~~ 190 (278)
T 1iy2_A 185 TNRPDI 190 (278)
T ss_dssp ESCTTS
T ss_pred cCCchh
Confidence 999986
No 277
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.66 E-value=4.6e-08 Score=112.31 Aligned_cols=143 Identities=21% Similarity=0.246 Sum_probs=83.8
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceE-EECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCCCCC
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI-LIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPFSEH 888 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I-~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~~~~ 888 (1171)
-+++|+++.|.||+|+|||||+..++.......|.+ +++... ..+. ...+++|+-+++..+
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~l~i--------------- 118 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDSLLV--------------- 118 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGGCEE---------------
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHHeEE---------------
Confidence 578999999999999999999888776554444444 333211 0111 111122221111100
Q ss_pred CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccC--CCEEEEecCCcCC----------CH
Q 001055 889 SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRR--SKILVLDEATAAV----------DV 956 (1171)
Q Consensus 889 ~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~--p~iLlLDEpTs~L----------D~ 956 (1171)
.. ..+. .|-+.++++++++ |+++|+||+++.+ |+
T Consensus 119 -----------------------------~~---~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~ 164 (349)
T 2zr9_A 119 -----------------------------SQ---PDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDS 164 (349)
T ss_dssp -----------------------------EC---CSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----
T ss_pred -----------------------------ec---CCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccc
Confidence 00 0121 2345577777755 9999999999988 32
Q ss_pred ---HHHHHHHHHHHHH----c-CCcEEEEEecChh----------------hhhh-cCEEEEEeCcEEEEecC
Q 001055 957 ---RTDALIQKTIREE----F-KSCTMLIIAHRLN----------------TIID-CDRILLLDSGRVLEYDT 1004 (1171)
Q Consensus 957 ---~t~~~i~~~l~~~----~-~~~tvi~vtH~~~----------------~~~~-~d~i~vl~~G~i~~~g~ 1004 (1171)
...+.+.+.++++ . .++|||+++|-.. .++. ||.++.+..+++...|+
T Consensus 165 ~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 165 HVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 1112333444333 1 4899999999653 1344 99999998877665554
No 278
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.65 E-value=2.3e-08 Score=112.22 Aligned_cols=138 Identities=12% Similarity=0.078 Sum_probs=86.6
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCch
Q 001055 189 PVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQ 268 (1171)
Q Consensus 189 ~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~ 268 (1171)
.+|++++++|+|||||||++..|++.+.++.| .+|.++.++++ ..+..|++.. ..+..+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------~~V~lv~~D~~--r~~a~eqL~~-----------~~~~~g-- 161 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------KKIAFITTDTY--RIAAVEQLKT-----------YAELLQ-- 161 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------CCEEEEECCCS--STTHHHHHHH-----------HHTTTT--
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------CEEEEEecCcc--cchHHHHHHH-----------HHHhcC--
Confidence 47899999999999999999999999877655 35889998873 3334443321 111111
Q ss_pred HHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc---CCCEEEEE-
Q 001055 269 HDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL---SGKTRVLV- 344 (1171)
Q Consensus 269 ~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~---~~~tvi~v- 344 (1171)
++. .. ..+ +..-+.+|+++ .++|++|+| |+++|+.....+.+ +.+... ...+++++
T Consensus 162 -----l~~-----~~----~~~-~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~e-l~~~l~~~~~~~~~lVl~ 221 (296)
T 2px0_A 162 -----APL-----EV----CYT-KEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDE-LKETIPFESSIQSFLVLS 221 (296)
T ss_dssp -----CCC-----CB----CSS-HHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHH-HHHHSCCCTTEEEEEEEE
T ss_pred -----CCe-----Ee----cCC-HHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHH-HHHHHhhcCCCeEEEEEE
Confidence 110 00 012 34456777764 899999999 89999876554443 232221 22334444
Q ss_pred -cCCcchhhh-cCEEEEEeCCEEEE
Q 001055 345 -TNQLHFLSQ-VDRIILVHEGMVKE 367 (1171)
Q Consensus 345 -tH~~~~l~~-~d~i~~l~~G~i~~ 367 (1171)
+|....+.. ++++..++.+.++.
T Consensus 222 at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 222 ATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp TTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred CCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 898777665 56655566666654
No 279
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.64 E-value=8.9e-10 Score=118.44 Aligned_cols=75 Identities=13% Similarity=0.067 Sum_probs=51.5
Q ss_pred cEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChH-------
Q 001055 786 SIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLM------- 858 (1171)
Q Consensus 786 ~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~------- 858 (1171)
.|+++|+...|+. ++++.+ ++++|+||||||||||+++|+|++.|++|.|.++|.++...++.
T Consensus 9 ~l~l~~~~~~~~~---------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (227)
T 1qhl_A 9 SLTLINWNGFFAR---------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLH 78 (227)
T ss_dssp EEEEEEETTEEEE---------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CG
T ss_pred EEEEEeeecccCC---------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchh
Confidence 3788888665521 466666 89999999999999999999999999999999999988443322
Q ss_pred -HHhhheEEEcCC
Q 001055 859 -DLRKILGIIPQS 870 (1171)
Q Consensus 859 -~~r~~i~~v~Q~ 870 (1171)
..+..+++++|+
T Consensus 79 ~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 79 GKLKAGVCYSMLD 91 (227)
T ss_dssp GGBCSSEEEEEEE
T ss_pred hHhhcCcEEEEEe
Confidence 235679999985
No 280
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.63 E-value=6.9e-10 Score=119.63 Aligned_cols=128 Identities=17% Similarity=0.203 Sum_probs=87.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCC---CCCCceEEE--------CCEecCC-CChHHHhhheEEEcCCc------cccc
Q 001055 814 SDKVGIVGRTGAGKSSMLNTLFRIV---ELERGRILI--------DGFDIAK-FGLMDLRKILGIIPQSP------VLFS 875 (1171)
Q Consensus 814 Ge~v~ivG~nGsGKSTLl~~l~g~~---~p~~G~I~i--------~g~~i~~-~~~~~~r~~i~~v~Q~~------~lf~ 875 (1171)
+.+++|+|++||||||+.++|.+.+ .++.|.+.. +|.++.. ....++++.+++++|++ .++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5789999999999999999999877 788999887 6776642 34456788899999876 3344
Q ss_pred ccHHhhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhh-hcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCc
Q 001055 876 GTVRFNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQV-SEAGENFSVGQRQLLSLSRALLRRSKILVLDEATA 952 (1171)
Q Consensus 876 ~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~-~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs 952 (1171)
.++.+++. ++++..++..+..++.+.....+..+.+ ...+.-++|+ .++++++.+++++|+.+++.
T Consensus 85 ~~v~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~~ 151 (227)
T 1cke_A 85 EDVSGEIR------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDASS 151 (227)
T ss_dssp EECHHHHT------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECCH
T ss_pred eeCchhhC------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCCH
Confidence 46666543 4567777777777776665443333222 1233445665 34556667778777776653
No 281
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.62 E-value=5.5e-11 Score=132.39 Aligned_cols=134 Identities=15% Similarity=0.082 Sum_probs=85.3
Q ss_pred CceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCC----Cccc------eecCcEEEEecCC-CCC-cccHHHH
Q 001055 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS----DASA------VIRGTVAYVPQVS-WIF-NATVRDN 246 (1171)
Q Consensus 179 ~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~----g~~~------~~~~~i~~v~Q~~-~l~-~~Tv~en 246 (1171)
.+++++++.+++| ++|+||||||||||+++|+|+..+.. |... .....+++++|.+ ... ..++.||
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~De 111 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDE 111 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEET
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeeh
Confidence 4789999999999 99999999999999999999987621 1000 0011355666654 222 3455555
Q ss_pred HhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCC---------
Q 001055 247 ILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS--------- 317 (1171)
Q Consensus 247 i~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts--------- 317 (1171)
|......... .. .....+. +......|||||+||+.+++|+..+|++| |||+.
T Consensus 112 id~~~~~r~~---~~--~~~~~~~-----------~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i 173 (274)
T 2x8a_A 112 VDALCPRRSD---RE--TGASVRV-----------VNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTL 173 (274)
T ss_dssp CTTTCC--------------CTTH-----------HHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEE
T ss_pred hhhhhcccCC---Cc--chHHHHH-----------HHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEE
Confidence 5432111000 00 0001111 11122479999999999999999999985 99974
Q ss_pred ---CCCHHHHHHHHHHHH
Q 001055 318 ---ALDAHVGRQVFDRCI 332 (1171)
Q Consensus 318 ---~LD~~~~~~l~~~l~ 332 (1171)
--|...+..|++.+.
T Consensus 174 ~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 174 FVGLPPPADRLAILKTIT 191 (274)
T ss_dssp ECCSCCHHHHHHHHHHHT
T ss_pred EeCCcCHHHHHHHHHHHH
Confidence 237888888887654
No 282
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.62 E-value=6e-09 Score=114.48 Aligned_cols=89 Identities=20% Similarity=0.220 Sum_probs=68.4
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHh---cCCCCCCceEE--------ECCEecC-CCChHHHhhheEEEcCCc------cc
Q 001055 812 PPSDKVGIVGRTGAGKSSMLNTLF---RIVELERGRIL--------IDGFDIA-KFGLMDLRKILGIIPQSP------VL 873 (1171)
Q Consensus 812 ~~Ge~v~ivG~nGsGKSTLl~~l~---g~~~p~~G~I~--------i~g~~i~-~~~~~~~r~~i~~v~Q~~------~l 873 (1171)
++|++++|+|||||||||++++|+ |+..|++|.|. .+|.++. ......+++.+++++|.+ .+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 789999999999999999999999 99999999999 9999884 455778899999999754 34
Q ss_pred ccccHHhhccCCCCCCHHHHHHHHHHhcHHHHH
Q 001055 874 FSGTVRFNLDPFSEHSDADLWEALERAHLKDAI 906 (1171)
Q Consensus 874 f~~tv~~nl~~~~~~~~~~i~~~l~~~~~~~~i 906 (1171)
+..++.+|+.. .++..+.........+
T Consensus 105 ~~~~v~~~i~~------~~v~~~~s~~~~~~~v 131 (252)
T 4e22_A 105 EGEDVSNEIRT------ETVGNTASQAAAFPRV 131 (252)
T ss_dssp TTEECTTGGGS------HHHHHHHHHHTTSHHH
T ss_pred CCeehhHHHHH------HHHHHHHHHhcccHHH
Confidence 45577777642 3444444444333333
No 283
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.57 E-value=2.2e-08 Score=112.68 Aligned_cols=98 Identities=19% Similarity=0.234 Sum_probs=67.5
Q ss_pred eeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHH
Q 001055 184 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAID 263 (1171)
Q Consensus 184 isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~ 263 (1171)
+++..++|++++|+|+|||||||++..|+|.+.+..+ +|.++..++. .....+++ ....+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~-------kV~lv~~D~~--r~~a~eqL-----------~~~~~ 156 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGK-------SVVLAAADTF--RAAAIEQL-----------KIWGE 156 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTC-------CEEEEEECTT--CHHHHHHH-----------HHHHH
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCC-------EEEEEccccc--cHHHHHHH-----------HHHHH
Confidence 3555678999999999999999999999999977533 3555555532 11111111 11111
Q ss_pred HcCchHHHhcCCCCCccccCCCCCccChHHHHHH---HHHHHhccCCCEEEEeCcCC
Q 001055 264 VTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRV---SMARAVYSNSDVFIFDDPLS 317 (1171)
Q Consensus 264 ~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv---~LAraL~~~~~vllLDEpts 317 (1171)
..++ + .+ ..+|||+.+++ +|++++..+||++|+|+|..
T Consensus 157 ~~gl-------~-----~~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 157 RVGA-------T-----VI----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHTC-------E-----EE----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred HcCC-------c-----EE----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 1111 1 11 24689999999 99999999999999999974
No 284
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.57 E-value=4.1e-09 Score=125.79 Aligned_cols=159 Identities=14% Similarity=0.123 Sum_probs=92.9
Q ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHhc--CCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhcc
Q 001055 806 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR--IVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLD 883 (1171)
Q Consensus 806 ~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g--~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~ 883 (1171)
.+++++.++..+.|.|+|||||||++++|.. ++.++.|++.+.+.|.+......+.. -|.++. +|..|
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~-~Vvtd-- 228 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLT-EVVTD-- 228 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSS-SCBCS--
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccc-eeecC--
Confidence 4778889999999999999999999999886 66777899988888876533222211 111111 11111
Q ss_pred CCCCCCHHHHHHHHHHhc-----HHHHHHHccCCcchhhh---cCCCCCChhHHHHH----------HHHHHhccCCC-E
Q 001055 884 PFSEHSDADLWEALERAH-----LKDAIRRNSLGLDAQVS---EAGENFSVGQRQLL----------SLSRALLRRSK-I 944 (1171)
Q Consensus 884 ~~~~~~~~~i~~~l~~~~-----~~~~i~~lp~gl~~~~~---~~~~~LSgGqkqrl----------~lArall~~p~-i 944 (1171)
.++..++++.+. =.+.+.. .|.....+ .....+||||+|+. ++|+++...|. +
T Consensus 229 ------~~~a~~~L~~~~~EmerR~~ll~~--~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~iv 300 (512)
T 2ius_A 229 ------MKDAANALRWCVNEMERRYKLMSA--LGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIV 300 (512)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHH--TTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEE
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHH--cCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEE
Confidence 111112221100 0122222 12211111 01123788887753 35677778898 7
Q ss_pred EEEecCCcCCCHHHHHHHHHHHHHH----c-CCcEEEEEecChh
Q 001055 945 LVLDEATAAVDVRTDALIQKTIREE----F-KSCTMLIIAHRLN 983 (1171)
Q Consensus 945 LlLDEpTs~LD~~t~~~i~~~l~~~----~-~~~tvi~vtH~~~ 983 (1171)
+++||++.-+|.. ...+.+.|.++ . .|.++|++|||.+
T Consensus 301 lvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 301 VLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 8999999988743 23344444332 2 2779999999987
No 285
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.57 E-value=1.8e-10 Score=126.66 Aligned_cols=137 Identities=16% Similarity=0.155 Sum_probs=92.7
Q ss_pred EEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEE
Q 001055 787 IKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGI 866 (1171)
Q Consensus 787 i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 866 (1171)
.+++++.+.|.. +.+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.++........++.++.
T Consensus 26 ~~l~~l~~~~~~--~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 99 (254)
T 1ixz_A 26 EELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 99 (254)
T ss_dssp HHHHHHHHHHHC--HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHH
T ss_pred HHHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHH
Confidence 345666666643 25899999999999 99999999999999999999875 7999999877654444445566778
Q ss_pred EcCCcc-ccc-ccHHhhccCCCCC-------CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHH
Q 001055 867 IPQSPV-LFS-GTVRFNLDPFSEH-------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRA 937 (1171)
Q Consensus 867 v~Q~~~-lf~-~tv~~nl~~~~~~-------~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAra 937 (1171)
++|... .+. .++.++++..... ..++..+. +.+++ ..|||||+||+.+++|
T Consensus 100 ~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~-----~~~ll---------------~~l~g~~~~~~~i~~a 159 (254)
T 1ixz_A 100 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT-----LNQLL---------------VEMDGFEKDTAIVVMA 159 (254)
T ss_dssp HHHHHTTSSSEEEEEETHHHHHC---------CHHHHHH-----HHHHH---------------HHHHTCCTTCCEEEEE
T ss_pred HHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHH-----HHHHH---------------HHHhCCCCCCCEEEEE
Confidence 888753 222 2455555321100 00111111 11111 2478999999999999
Q ss_pred hccCCCEEEEecCC
Q 001055 938 LLRRSKILVLDEAT 951 (1171)
Q Consensus 938 ll~~p~iLlLDEpT 951 (1171)
+..+|++ ||++.
T Consensus 160 ~t~~p~~--ld~~l 171 (254)
T 1ixz_A 160 ATNRPDI--LDPAL 171 (254)
T ss_dssp EESCGGG--SCGGG
T ss_pred ccCCchh--CCHHH
Confidence 9999986 56544
No 286
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.51 E-value=3.8e-08 Score=102.75 Aligned_cols=47 Identities=28% Similarity=0.470 Sum_probs=35.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC-------------CCCceEEECCEecCCCChHHHhh
Q 001055 814 SDKVGIVGRTGAGKSSMLNTLFRIVE-------------LERGRILIDGFDIAKFGLMDLRK 862 (1171)
Q Consensus 814 Ge~v~ivG~nGsGKSTLl~~l~g~~~-------------p~~G~I~i~g~~i~~~~~~~~r~ 862 (1171)
|++++|+||||||||||+++|+|+++ |..|++ +|.+....+...+..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~ 60 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKS 60 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHH
Confidence 67899999999999999999999998 666664 555544444444333
No 287
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.49 E-value=1.4e-07 Score=112.70 Aligned_cols=177 Identities=11% Similarity=0.130 Sum_probs=107.9
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc-eEEECCEecCCCChHHHhhhe-EEEcCCcccccccHH
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG-RILIDGFDIAKFGLMDLRKIL-GIIPQSPVLFSGTVR 879 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G-~I~i~g~~i~~~~~~~~r~~i-~~v~Q~~~lf~~tv~ 879 (1171)
+.|+++...+++|+.+.|.|++|+|||||+..+++...+..| .|.+.+.+ .+...++.++ +....-+. ..++
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r~~~~~~~~~~---~~l~ 264 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMRMLCAEGNINA---QNLR 264 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHHHHHHHHTCCH---HHHH
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHHHHHHHcCCCH---HHHh
Confidence 478888888999999999999999999999999988776555 56655432 3445544432 11100000 0111
Q ss_pred hhccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhc--cCCCEEEEecCCcCCCH-
Q 001055 880 FNLDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALL--RRSKILVLDEATAAVDV- 956 (1171)
Q Consensus 880 ~nl~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall--~~p~iLlLDEpTs~LD~- 956 (1171)
. ...++++.....+. .+.+...|. .+.. ...+|.+|.+ +.+|.+. .+|+++++|+++...+.
T Consensus 265 ~-----g~l~~~~~~~~~~a---~~~l~~~~l----~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~ 329 (454)
T 2r6a_A 265 T-----GKLTPEDWGKLTMA---MGSLSNAGI----YIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSG 329 (454)
T ss_dssp T-----SCCCHHHHHHHHHH---HHHHHSSCE----EEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSC
T ss_pred c-----CCCCHHHHHHHHHH---HHHHhcCCE----EEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCC
Confidence 1 12233333222221 112222221 1222 2468999876 5667666 57999999999987743
Q ss_pred -------HHHHHHHHHHHHHc--CCcEEEEEec---------C--hh--------hhhh-cCEEEEEeCcEE
Q 001055 957 -------RTDALIQKTIREEF--KSCTMLIIAH---------R--LN--------TIID-CDRILLLDSGRV 999 (1171)
Q Consensus 957 -------~t~~~i~~~l~~~~--~~~tvi~vtH---------~--~~--------~~~~-~d~i~vl~~G~i 999 (1171)
.....+.+.|+.+. .+++||+++| + +. .+.. ||.|+.|..++.
T Consensus 330 ~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 330 RSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp C----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 23345566666554 3799999999 2 22 3444 999999987654
No 288
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.49 E-value=1.3e-09 Score=124.93 Aligned_cols=143 Identities=17% Similarity=0.182 Sum_probs=87.7
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCC-------CEEEEEcCCCccHHHHHHHHhcCC----CCCCCccce-------
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVG-------SLVAIVGGTGEGKTSLISAMLGEL----PPVSDASAV------- 224 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~G-------e~v~lvG~nGsGKSTLl~~l~G~~----~~~~g~~~~------- 224 (1171)
++.++++..|. .+.+++++++.+++| +.++|+||||+|||||+++|+|++ .+++|....
T Consensus 19 lr~~~l~~~~g---~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~ 95 (334)
T 1in4_A 19 LRPKSLDEFIG---QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAA 95 (334)
T ss_dssp TSCSSGGGCCS---CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHH
T ss_pred cCCccHHHccC---cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHH
Confidence 33445555554 246899999999877 899999999999999999999988 555554321
Q ss_pred -----ecCcEEEEecCCCCCcccHHHHHhcCC-CC--C----HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChH
Q 001055 225 -----IRGTVAYVPQVSWIFNATVRDNILFGS-AF--E----PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGG 292 (1171)
Q Consensus 225 -----~~~~i~~v~Q~~~l~~~Tv~eni~~g~-~~--~----~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGG 292 (1171)
.+..|.+++|.+.+.. ++.|++.... .. + .....+.+ . ..++.-...........||+|
T Consensus 96 ~~~~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~~~i-----~---~~l~~~~li~at~~~~~Ls~~ 166 (334)
T 1in4_A 96 ILTSLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPSAKSI-----R---IDIQPFTLVGATTRSGLLSSP 166 (334)
T ss_dssp HHHHCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC-----------------------CCCEEEEEESCGGGSCHH
T ss_pred HHHHccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCcccccc-----c---ccCCCeEEEEecCCcccCCHH
Confidence 2346999999887765 7888774210 00 0 00000000 0 011110000012334589999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHh
Q 001055 293 QKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 333 (1171)
Q Consensus 293 qrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~ 333 (1171)
+|||++++ .+||+.+...+.+.+.+
T Consensus 167 l~sR~~l~----------------~~Ld~~~~~~l~~iL~~ 191 (334)
T 1in4_A 167 LRSRFGII----------------LELDFYTVKELKEIIKR 191 (334)
T ss_dssp HHTTCSEE----------------EECCCCCHHHHHHHHHH
T ss_pred HHHhcCce----------------eeCCCCCHHHHHHHHHH
Confidence 99998654 66777777777765544
No 289
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.48 E-value=2.8e-08 Score=122.99 Aligned_cols=155 Identities=13% Similarity=0.131 Sum_probs=102.2
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCC-ceEEECCEecCCCChHHHhhheEEEcCCc---------
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELER-GRILIDGFDIAKFGLMDLRKILGIIPQSP--------- 871 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~-G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~--------- 871 (1171)
.+++++++.+.+|+.++|+||||+|||||+++|++++.+.. |.+.+++.+.... ...++++|+..
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHHH
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHHH
Confidence 58999999999999999999999999999999999999887 8888887665443 34588887764
Q ss_pred -------------ccc-cccHHhhccCCCCC-CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHH
Q 001055 872 -------------VLF-SGTVRFNLDPFSEH-SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSR 936 (1171)
Q Consensus 872 -------------~lf-~~tv~~nl~~~~~~-~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAr 936 (1171)
..+ ..++.+|+...+.. ....+... ......+++... +.. ......+|+|++|++..++
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~~----~~~-~~~~g~~~~g~~~~i~~g~ 196 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGDV----RHD-PFQSGGLGTPAHERVEPGM 196 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCEE----CCC-CC----CCCCGGGGEECCH
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhcCceE----Eec-hhhcCCccccccccccCce
Confidence 111 11344444211000 00000000 000111111111 000 0112359999999999999
Q ss_pred HhccCCCEEEEecCCcCCCHHHHHHHHHHHHH
Q 001055 937 ALLRRSKILVLDEATAAVDVRTDALIQKTIRE 968 (1171)
Q Consensus 937 all~~p~iLlLDEpTs~LD~~t~~~i~~~l~~ 968 (1171)
....++.+|+|||... |++.....+.+.|.+
T Consensus 197 ~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 197 IHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999988 899999999999975
No 290
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.48 E-value=2.1e-07 Score=104.45 Aligned_cols=127 Identities=13% Similarity=0.005 Sum_probs=81.0
Q ss_pred EEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccH
Q 001055 164 SIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATV 243 (1171)
Q Consensus 164 ~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv 243 (1171)
.++++++.|+.. . ++++|+ +|++++++|+||+||||++..|+|.+.+..| ++.++..++.- ..++
T Consensus 78 ~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~-------~v~l~~~d~~~-~~~~ 142 (295)
T 1ls1_A 78 VYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGR-------RPLLVAADTQR-PAAR 142 (295)
T ss_dssp HHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTC-------CEEEEECCSSC-HHHH
T ss_pred HHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC-------eEEEecCCccc-HhHH
Confidence 344555556421 1 577887 8999999999999999999999999876543 35555555421 1111
Q ss_pred HHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCc-CCCCCHH
Q 001055 244 RDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDP-LSALDAH 322 (1171)
Q Consensus 244 ~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEp-ts~LD~~ 322 (1171)
+ ......+..+ +..++.+ ..-...+-+|.+|+++...++|++|+|+| ++++|..
T Consensus 143 -~-----------ql~~~~~~~~----l~~~~~~---------~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~ 197 (295)
T 1ls1_A 143 -E-----------QLRLLGEKVG----VPVLEVM---------DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEP 197 (295)
T ss_dssp -H-----------HHHHHHHHHT----CCEEECC---------TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHH
T ss_pred -H-----------HHHHhcccCC----eEEEEcC---------CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHH
Confidence 1 0111111111 1111110 11234455789999998899999999999 9999998
Q ss_pred HHHHHHHH
Q 001055 323 VGRQVFDR 330 (1171)
Q Consensus 323 ~~~~l~~~ 330 (1171)
....+...
T Consensus 198 ~~~~l~~~ 205 (295)
T 1ls1_A 198 LMGELARL 205 (295)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776653
No 291
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.47 E-value=1.7e-07 Score=101.88 Aligned_cols=169 Identities=22% Similarity=0.248 Sum_probs=86.9
Q ss_pred Cceeee-eEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHh-cCCCCCHH
Q 001055 179 PTLLNI-NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNIL-FGSAFEPA 256 (1171)
Q Consensus 179 ~~l~~i-sl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~-~g~~~~~~ 256 (1171)
+.|+.+ .-.+++|++++|+||||||||||+..++....+. .+.+.|+.-+.. ...+.+.+. +|.. .+
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~-------~~~v~~~~~e~~--~~~~~~~~~~~g~~--~~ 78 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKM-------GEPGIYVALEEH--PVQVRQNMAQFGWD--VK 78 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHT-------TCCEEEEESSSC--HHHHHHHHHTTTCC--CH
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhc-------CCeEEEEEccCC--HHHHHHHHHHcCCC--HH
Confidence 457776 6789999999999999999999966554432221 123566654432 112223222 2211 11
Q ss_pred HHHHHHHHcCchHHHhcCCC--CCccccCCCCCccChHHHHHHHHHHHhc--cCCCEEEEeCcCCCC--CHHHHHHHHHH
Q 001055 257 RYEKAIDVTSLQHDLDLLPG--GDVTEIGERGVNISGGQKQRVSMARAVY--SNSDVFIFDDPLSAL--DAHVGRQVFDR 330 (1171)
Q Consensus 257 ~~~~~~~~~~l~~~~~~~~~--~~~~~i~~~g~~LSGGqrqRv~LAraL~--~~~~vllLDEpts~L--D~~~~~~l~~~ 330 (1171)
.+. ..-.+. ..+.... +.....+.....-+....+....++.++ .+|+++++|+|++.+ |+...+..+..
T Consensus 79 ~~~---~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~ 154 (247)
T 2dr3_A 79 PYE---EKGMFA-MVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQ 154 (247)
T ss_dssp HHH---HHTSEE-EEECSTTTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHH
T ss_pred HHh---hCCcEE-EEecchhhcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHH
Confidence 110 000000 0000000 0000000000000112223333333333 579999999999988 65444444444
Q ss_pred HHhh-ccCCCEEEEEcCCcch--------h-hhcCEEEEEeC
Q 001055 331 CIRG-ELSGKTRVLVTNQLHF--------L-SQVDRIILVHE 362 (1171)
Q Consensus 331 l~~~-~~~~~tvi~vtH~~~~--------l-~~~d~i~~l~~ 362 (1171)
+.+. ...|.|+|+++|.... + ..+|.++.|+.
T Consensus 155 l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 155 LKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 5443 3458999999998764 2 34799999874
No 292
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.47 E-value=7.5e-08 Score=120.07 Aligned_cols=133 Identities=16% Similarity=0.177 Sum_probs=96.3
Q ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhhccCC
Q 001055 808 SFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL--ERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFNLDPF 885 (1171)
Q Consensus 808 s~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p--~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~nl~~~ 885 (1171)
++.+++|.+++|+|++|+|||||++.|++...+ ..|+| .+|..+.+..+.+.++.+++.+|...++..+++.||...
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 457789999999999999999999999987665 67998 788889888888888899999999988877887777421
Q ss_pred CCCCH--HHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHH
Q 001055 886 SEHSD--ADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQ 963 (1171)
Q Consensus 886 ~~~~~--~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~ 963 (1171)
..+.+ .++. ..+-..+.-++++| |+.++++.++..+.
T Consensus 82 pG~~~f~~~~~----------------------------------------~~l~~ad~~ilVvD-~~~g~~~qt~~~~~ 120 (665)
T 2dy1_A 82 PGYGDFVGEIR----------------------------------------GALEAADAALVAVS-AEAGVQVGTERAWT 120 (665)
T ss_dssp CCSGGGHHHHH----------------------------------------HHHHHCSEEEEEEE-TTTCSCHHHHHHHH
T ss_pred CCccchHHHHH----------------------------------------HHHhhcCcEEEEEc-CCcccchhHHHHHH
Confidence 11111 1111 11112355688888 99999998885544
Q ss_pred HHHHHHcCCcEEEEEecChhhh
Q 001055 964 KTIREEFKSCTMLIIAHRLNTI 985 (1171)
Q Consensus 964 ~~l~~~~~~~tvi~vtH~~~~~ 985 (1171)
.+ .. .+.++|++.|.++..
T Consensus 121 ~~-~~--~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 121 VA-ER--LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HH-HH--TTCCEEEEEECGGGC
T ss_pred HH-HH--ccCCEEEEecCCchh
Confidence 43 33 467788888887753
No 293
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.47 E-value=1.9e-09 Score=122.16 Aligned_cols=57 Identities=18% Similarity=0.232 Sum_probs=51.3
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEe-------------------cCCCEEEEEcCCCccHHHHHHHHhcCCC--CCCC
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDI-------------------PVGSLVAIVGGTGEGKTSLISAMLGELP--PVSD 220 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i-------------------~~Ge~v~lvG~nGsGKSTLl~~l~G~~~--~~~g 220 (1171)
.|+++|+++.|. ++++++++.+ ++|+++||+|+||||||||+++|+|+++ |++|
T Consensus 37 ~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G 111 (308)
T 1sq5_A 37 DLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHR 111 (308)
T ss_dssp TCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCC
T ss_pred ccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCC
Confidence 488999999993 5899999988 9999999999999999999999999988 8877
Q ss_pred ccc
Q 001055 221 ASA 223 (1171)
Q Consensus 221 ~~~ 223 (1171)
.+.
T Consensus 112 ~i~ 114 (308)
T 1sq5_A 112 RVE 114 (308)
T ss_dssp CEE
T ss_pred eEE
Confidence 643
No 294
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.45 E-value=2.3e-08 Score=112.28 Aligned_cols=62 Identities=18% Similarity=0.187 Sum_probs=41.9
Q ss_pred EEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce--------------ecCcEEEEecCCCCC-----cccHHHH
Q 001055 186 LDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------IRGTVAYVPQVSWIF-----NATVRDN 246 (1171)
Q Consensus 186 l~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------~~~~i~~v~Q~~~l~-----~~Tv~en 246 (1171)
+++.+|++++|+|+||+|||||+++|+|..+|.+|.+.. .+..+||++|.|.+. ..|+ ||
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 667899999999999999999999999999988775432 011169999999763 3588 88
Q ss_pred Hh
Q 001055 247 IL 248 (1171)
Q Consensus 247 i~ 248 (1171)
+.
T Consensus 247 l~ 248 (307)
T 1t9h_A 247 LG 248 (307)
T ss_dssp HG
T ss_pred HH
Confidence 83
No 295
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.45 E-value=1.1e-07 Score=112.61 Aligned_cols=45 Identities=18% Similarity=0.340 Sum_probs=41.8
Q ss_pred CceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce
Q 001055 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV 224 (1171)
Q Consensus 179 ~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~ 224 (1171)
++|+++||++++ ++++|+||||||||||+++|+|+++|++|.+..
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~ 62 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNF 62 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEE
Confidence 489999999999 999999999999999999999999999886543
No 296
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.43 E-value=9e-09 Score=127.40 Aligned_cols=148 Identities=14% Similarity=0.130 Sum_probs=91.9
Q ss_pred CCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee--------cCcEEEEecCC-------------
Q 001055 178 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI--------RGTVAYVPQVS------------- 236 (1171)
Q Consensus 178 ~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~--------~~~i~~v~Q~~------------- 236 (1171)
..+++++++.+.+|+.++|+||||||||||+++|+|.+++..++.... ...++++||..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~~~~~ 126 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIVEKYREKAK 126 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHHHHHHHHHhhc
Confidence 468999999999999999999999999999999999998876433222 23477877653
Q ss_pred ---------CCC-cccHHHHHhcCCCCCH-HHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhcc
Q 001055 237 ---------WIF-NATVRDNILFGSAFEP-ARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYS 305 (1171)
Q Consensus 237 ---------~l~-~~Tv~eni~~g~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~ 305 (1171)
|.+ ..++.+|+..++.... ..+.. .........+..... -......+|+|++|++..++....
T Consensus 127 ~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~-~~~~~~~~L~G~~~~-----~~~~~g~~~~g~~~~i~~g~~~~a 200 (604)
T 3k1j_A 127 SQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFID-ATGAHAGALLGDVRH-----DPFQSGGLGTPAHERVEPGMIHRA 200 (604)
T ss_dssp HHTCC-----------CCCEEEECCTTCSSCCEEE-CTTCCHHHHHCEECC-----CCC----CCCCGGGGEECCHHHHT
T ss_pred cchhhhhhcccccccccccceeeccccCCCCCEEE-cCCCCHHhcCceEEe-----chhhcCCccccccccccCceeeec
Confidence 222 2344444433211000 00000 000000111111100 011224699999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHH
Q 001055 306 NSDVFIFDDPLSALDAHVGRQVFDRCI 332 (1171)
Q Consensus 306 ~~~vllLDEpts~LD~~~~~~l~~~l~ 332 (1171)
++.+|+|||+.. |++.....+.+.+.
T Consensus 201 ~~gvL~LDEi~~-l~~~~q~~Ll~~Le 226 (604)
T 3k1j_A 201 HKGVLFIDEIAT-LSLKMQQSLLTAMQ 226 (604)
T ss_dssp TTSEEEETTGGG-SCHHHHHHHHHHHH
T ss_pred CCCEEEEechhh-CCHHHHHHHHHHHH
Confidence 999999999988 89998888877654
No 297
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.42 E-value=6e-08 Score=109.34 Aligned_cols=89 Identities=16% Similarity=0.179 Sum_probs=62.6
Q ss_pred EEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccce--------------e-cCcEEEEecCCC-------------
Q 001055 186 LDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAV--------------I-RGTVAYVPQVSW------------- 237 (1171)
Q Consensus 186 l~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~--------------~-~~~i~~v~Q~~~------------- 237 (1171)
|++.+|++++|+||||||||||+++|+|+.+|++|.+.. . ...+||++|.|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 566789999999999999999999999999998876442 0 124899999984
Q ss_pred ---CC-cccHHHHHhcCCC----CCHHHHHHHHHHcCch-HHHhcCC
Q 001055 238 ---IF-NATVRDNILFGSA----FEPARYEKAIDVTSLQ-HDLDLLP 275 (1171)
Q Consensus 238 ---l~-~~Tv~eni~~g~~----~~~~~~~~~~~~~~l~-~~~~~~~ 275 (1171)
+| ..|+ +|+.|+.- ....++.++++..+|. +..+..|
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 23 5688 99988521 1234677788888884 4444444
No 298
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.37 E-value=2.7e-08 Score=105.20 Aligned_cols=64 Identities=22% Similarity=0.225 Sum_probs=43.5
Q ss_pred eEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCC--Cccc------eecCcEEEEecCCCCC-cccHHHHHh
Q 001055 185 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVS--DASA------VIRGTVAYVPQVSWIF-NATVRDNIL 248 (1171)
Q Consensus 185 sl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~--g~~~------~~~~~i~~v~Q~~~l~-~~Tv~eni~ 248 (1171)
|+++++|++++|+||||||||||+++|+|.++... +... ..+..++|++|++.+| ..++.+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 57788999999999999999999999999974211 1000 0123588999998766 456666654
No 299
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.37 E-value=1.5e-07 Score=98.99 Aligned_cols=36 Identities=22% Similarity=0.263 Sum_probs=31.5
Q ss_pred HHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHH
Q 001055 932 LSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREE 969 (1171)
Q Consensus 932 l~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~ 969 (1171)
...|++++.+|+++++| ||++|......+.+.|.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence 45689999999999999 9999999999888887663
No 300
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.37 E-value=6.7e-09 Score=120.04 Aligned_cols=136 Identities=13% Similarity=0.114 Sum_probs=87.6
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhh
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN 881 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~n 881 (1171)
.+++++++.+++|++++|+||||||||||+++|+|. .+|.+..-+ . +...++..+|++||...++ .++
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~--~---~~~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN--L---PLDRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS--S---CTTTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe--c---cchhHHHHHHHhcchhHHH----HHH
Confidence 589999999999999999999999999999999986 468776511 1 1122344588899987543 222
Q ss_pred ccCCCC----C-CHHHHHHHHHHhcHHHHHHH---------ccCCcc-----hhhhcCCCCCChhHHHHHHHHHHhccCC
Q 001055 882 LDPFSE----H-SDADLWEALERAHLKDAIRR---------NSLGLD-----AQVSEAGENFSVGQRQLLSLSRALLRRS 942 (1171)
Q Consensus 882 l~~~~~----~-~~~~i~~~l~~~~~~~~i~~---------lp~gl~-----~~~~~~~~~LSgGqkqrl~lArall~~p 942 (1171)
++.... . ....+. ....+.+.+.. .|..++ -.++.....+++|.+||+..+.+++.+|
T Consensus 225 ~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~p 301 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKD 301 (377)
T ss_dssp CCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCH
T ss_pred HHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCC
Confidence 222111 0 000110 11122233320 011111 1234455679999999999998899999
Q ss_pred CEEE-EecCCc
Q 001055 943 KILV-LDEATA 952 (1171)
Q Consensus 943 ~iLl-LDEpTs 952 (1171)
++++ ||+|+.
T Consensus 302 DLliyLd~~~~ 312 (377)
T 1svm_A 302 YLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHTCTH
T ss_pred CeEEEEeCCHH
Confidence 9988 999998
No 301
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.35 E-value=8.8e-08 Score=103.58 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=23.3
Q ss_pred CceeeeeEEecCCCEEEEEcCCCccHHHHHHHHh-cCCCC
Q 001055 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAML-GELPP 217 (1171)
Q Consensus 179 ~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~-G~~~~ 217 (1171)
...+++||++++|++++|+||||||||||+++|+ |.+++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 4678999999999999999999999999999999 99843
No 302
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.32 E-value=6.2e-07 Score=107.05 Aligned_cols=167 Identities=10% Similarity=0.072 Sum_probs=101.7
Q ss_pred CceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHH------------
Q 001055 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDN------------ 246 (1171)
Q Consensus 179 ~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~en------------ 246 (1171)
+.|+++...+++|+++.|.|++|+|||||+..+++...+..| ..+.|++-+-. ...+.+.
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g------~~Vl~~s~E~s--~~~l~~r~~~~~~~~~~~~ 262 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTN------ENVAIFSLEMS--AQQLVMRMLCAEGNINAQN 262 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS------CCEEEEESSSC--HHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC------CcEEEEECCCC--HHHHHHHHHHHHcCCCHHH
Confidence 468888888999999999999999999999999987644322 24666664421 0112221
Q ss_pred HhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhc--cCCCEEEEeCcCCCCCH---
Q 001055 247 ILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVY--SNSDVFIFDDPLSALDA--- 321 (1171)
Q Consensus 247 i~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~--~~~~vllLDEpts~LD~--- 321 (1171)
+.-| ....+.+.++.+..+ .+...+ . .+.+ ...+|++|.+ +.+|.+. .+|+++++|+++...++
T Consensus 263 l~~g-~l~~~~~~~~~~a~~---~l~~~~---l-~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~ 331 (454)
T 2r6a_A 263 LRTG-KLTPEDWGKLTMAMG---SLSNAG---I-YIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRS 331 (454)
T ss_dssp HHTS-CCCHHHHHHHHHHHH---HHHSSC---E-EEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC-
T ss_pred HhcC-CCCHHHHHHHHHHHH---HHhcCC---E-EEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCC
Confidence 1112 122333332222211 111111 1 1111 2478999986 5666665 68999999999998743
Q ss_pred -----HHHHHHHHHHHhhcc-CCCEEEEEcC---------C--cc--------hhh-hcCEEEEEeCCE
Q 001055 322 -----HVGRQVFDRCIRGEL-SGKTRVLVTN---------Q--LH--------FLS-QVDRIILVHEGM 364 (1171)
Q Consensus 322 -----~~~~~l~~~l~~~~~-~~~tvi~vtH---------~--~~--------~l~-~~d~i~~l~~G~ 364 (1171)
.....+...|....+ .+.++|+++| + +. .+. .||.|+.|+.+.
T Consensus 332 ~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~ 400 (454)
T 2r6a_A 332 KENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDD 400 (454)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccc
Confidence 223455555554433 3789999999 2 22 233 379999998764
No 303
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.27 E-value=8.3e-07 Score=101.88 Aligned_cols=143 Identities=17% Similarity=0.275 Sum_probs=82.9
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcC
Q 001055 187 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTS 266 (1171)
Q Consensus 187 ~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~ 266 (1171)
.+++|+++.|.||+|||||||+..++...... .+.+.|+.-+..+ +.. + .+..+
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~-------g~~vlyi~~E~~~---------------~~~-~---a~~lG 110 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAA-------GGIAAFIDAEHAL---------------DPE-Y---AKKLG 110 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHT-------TCCEEEEESSCCC---------------CHH-H---HHHTT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEECCCCc---------------CHH-H---HHHcC
Confidence 68899999999999999999988887654322 2346777665321 111 0 11112
Q ss_pred chHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccC--CCEEEEeCcCCCC----------CH---HHHHHHHHHH
Q 001055 267 LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSN--SDVFIFDDPLSAL----------DA---HVGRQVFDRC 331 (1171)
Q Consensus 267 l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~--~~vllLDEpts~L----------D~---~~~~~l~~~l 331 (1171)
.. .+.+. +-. ..++ .+-+.+++++..+ |+++++|+|++.+ |+ ...+.+.+.+
T Consensus 111 ~~--~~~l~------i~~---~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l 177 (349)
T 2zr9_A 111 VD--TDSLL------VSQ---PDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQAL 177 (349)
T ss_dssp CC--GGGCE------EEC---CSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHH
T ss_pred CC--HHHeE------Eec---CCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHH
Confidence 11 00000 000 1133 3346678888755 9999999999998 33 1112222222
Q ss_pred Hhh----ccCCCEEEEEcCCcch----------------hh-hcCEEEEEeCCEEEEe
Q 001055 332 IRG----ELSGKTRVLVTNQLHF----------------LS-QVDRIILVHEGMVKEE 368 (1171)
Q Consensus 332 ~~~----~~~~~tvi~vtH~~~~----------------l~-~~d~i~~l~~G~i~~~ 368 (1171)
.+. ...+.|+|+++|-..- +. .||.++.++.+++...
T Consensus 178 ~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~ 235 (349)
T 2zr9_A 178 RKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKD 235 (349)
T ss_dssp HHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECS
T ss_pred HHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeec
Confidence 222 2348999999996541 33 3688888877665443
No 304
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.22 E-value=3.1e-07 Score=96.17 Aligned_cols=69 Identities=16% Similarity=0.264 Sum_probs=58.5
Q ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-------------CCCceEEECCEecCCCChHHHhhheEEEcCCccccc
Q 001055 809 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE-------------LERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFS 875 (1171)
Q Consensus 809 ~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~-------------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~ 875 (1171)
+...+|+.++|+||||||||||++.|.+.++ |..|+ ++|++..-++...+++.+ .|+.+++.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~ 88 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEF 88 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEE
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhh
Confidence 3445899999999999999999999999876 77887 789988888888888876 58888888
Q ss_pred ccHHhhc
Q 001055 876 GTVRFNL 882 (1171)
Q Consensus 876 ~tv~~nl 882 (1171)
.++..|+
T Consensus 89 ~~~~~n~ 95 (197)
T 3ney_A 89 GSYQGNM 95 (197)
T ss_dssp EEETTEE
T ss_pred hhhhcee
Confidence 8998885
No 305
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.21 E-value=1.5e-07 Score=112.47 Aligned_cols=158 Identities=12% Similarity=0.081 Sum_probs=80.1
Q ss_pred eeeEEecCCCEEEEEcCCCccHHHHHHHHhc--CCCCCCCccce--ec-CcE--EEEecCCCCCcccHHHHHhcCCCCCH
Q 001055 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLG--ELPPVSDASAV--IR-GTV--AYVPQVSWIFNATVRDNILFGSAFEP 255 (1171)
Q Consensus 183 ~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G--~~~~~~g~~~~--~~-~~i--~~v~Q~~~l~~~Tv~eni~~g~~~~~ 255 (1171)
.+++++.+|..++|.|.+||||||+++.|.. .+.++.+.+.. +. +.. .....-|++.. +|. .+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~lPhl~~-~Vv--------td~ 229 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLT-EVV--------TDM 229 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTTCTTBSS-SCB--------CSH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhccCCcccc-eee--------cCH
Confidence 4788999999999999999999999999876 33333232211 10 000 00000111110 111 111
Q ss_pred HHHHHHHHHcC--ch---HHHhcCCCCCccccCC-CCCccChHHHHHH----------HHHHHhccCCC-EEEEeCcCCC
Q 001055 256 ARYEKAIDVTS--LQ---HDLDLLPGGDVTEIGE-RGVNISGGQKQRV----------SMARAVYSNSD-VFIFDDPLSA 318 (1171)
Q Consensus 256 ~~~~~~~~~~~--l~---~~~~~~~~~~~~~i~~-~g~~LSGGqrqRv----------~LAraL~~~~~-vllLDEpts~ 318 (1171)
+...++++++. +. +.+....-.+.....+ ....+||||+||. ++|+++...|. ++++||+++.
T Consensus 230 ~~a~~~L~~~~~EmerR~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~l 309 (512)
T 2ius_A 230 KDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADL 309 (512)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHH
Confidence 11111111110 00 1111111000000000 0124788887652 35677788898 8999999998
Q ss_pred CCHHH--HHHHHHHHHhhcc-CCCEEEEEcCCcc
Q 001055 319 LDAHV--GRQVFDRCIRGEL-SGKTRVLVTNQLH 349 (1171)
Q Consensus 319 LD~~~--~~~l~~~l~~~~~-~~~tvi~vtH~~~ 349 (1171)
+|... ...++..+.+..+ .|.++|++||++.
T Consensus 310 l~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 310 MMTVGKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred HhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 87432 2233333333333 3889999999987
No 306
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.17 E-value=2.8e-07 Score=97.28 Aligned_cols=64 Identities=16% Similarity=0.096 Sum_probs=43.3
Q ss_pred ceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcc
Q 001055 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPV 872 (1171)
Q Consensus 804 l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~ 872 (1171)
..+-.++.++|++++|+|||||||||++++|.+.+ |.+.++|.++... ....+..+++++|++.
T Consensus 19 ~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~ 82 (200)
T 4eun_A 19 YFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDED 82 (200)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHH
T ss_pred HHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcc
Confidence 33334667899999999999999999999999987 8999998777421 1122335678887753
No 307
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.16 E-value=1.7e-06 Score=102.87 Aligned_cols=123 Identities=13% Similarity=0.174 Sum_probs=80.0
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhh
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN 881 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~n 881 (1171)
..++++++.+++| +.|+||+|+|||||++++++..... -+. .+..+.
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~--f~~-----------------------------is~~~~ 85 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANVP--FFH-----------------------------ISGSDF 85 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC--EEE-----------------------------EEGGGT
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC--eee-----------------------------CCHHHH
Confidence 3567777777877 8899999999999999999853210 000 111111
Q ss_pred ccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCC----------
Q 001055 882 LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEAT---------- 951 (1171)
Q Consensus 882 l~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpT---------- 951 (1171)
...+ .| .|++++|-.+++|....|.||++||+.
T Consensus 86 ~~~~-------------------------~g------------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~ 128 (476)
T 2ce7_A 86 VELF-------------------------VG------------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGL 128 (476)
T ss_dssp TTCC-------------------------TT------------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-----
T ss_pred HHHH-------------------------hc------------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccccc
Confidence 1110 00 267888899999999999999999994
Q ss_pred cCCCHHHHHHHHHHHHHHc-----CCcEEEEEecChhhhh-------hcCEEEEE
Q 001055 952 AAVDVRTDALIQKTIREEF-----KSCTMLIIAHRLNTII-------DCDRILLL 994 (1171)
Q Consensus 952 s~LD~~t~~~i~~~l~~~~-----~~~tvi~vtH~~~~~~-------~~d~i~vl 994 (1171)
.+.|....+.+.+.+..+- .+..||.+||+.+.++ ++|+.+.+
T Consensus 129 ~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i 183 (476)
T 2ce7_A 129 GGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVV 183 (476)
T ss_dssp ----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEEC
T ss_pred CcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeec
Confidence 3667666666666665431 3568899999986653 25665544
No 308
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.16 E-value=3.6e-07 Score=94.77 Aligned_cols=67 Identities=16% Similarity=0.079 Sum_probs=43.7
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCC-CCceEEE----------CCEecCCCChHHHhhheEEEcCCcccccccHHh
Q 001055 812 PPSDKVGIVGRTGAGKSSMLNTLFRIVEL-ERGRILI----------DGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRF 880 (1171)
Q Consensus 812 ~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p-~~G~I~i----------~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~ 880 (1171)
.+|++++|+||||||||||+++|.+.+++ ..|.|.. +|.+....+...+++. +.|+..++..++.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 79 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED 79 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence 36999999999999999999999999864 4455543 3444333444444432 33444555555555
Q ss_pred h
Q 001055 881 N 881 (1171)
Q Consensus 881 n 881 (1171)
|
T Consensus 80 n 80 (180)
T 1kgd_A 80 A 80 (180)
T ss_dssp E
T ss_pred c
Confidence 5
No 309
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.15 E-value=3e-06 Score=100.78 Aligned_cols=115 Identities=22% Similarity=0.278 Sum_probs=74.3
Q ss_pred ceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHH
Q 001055 180 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE 259 (1171)
Q Consensus 180 ~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~ 259 (1171)
.++++++.+++| +.|+||+|+|||||++++++.... .+-++. ..+.+
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~----------~f~~is---------~~~~~------------ 86 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV----------PFFHIS---------GSDFV------------ 86 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC----------CEEEEE---------GGGTT------------
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC----------CeeeCC---------HHHHH------------
Confidence 566777777877 889999999999999999986421 011111 00000
Q ss_pred HHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcC----------CCCCHHHHHHHHH
Q 001055 260 KAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL----------SALDAHVGRQVFD 329 (1171)
Q Consensus 260 ~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpt----------s~LD~~~~~~l~~ 329 (1171)
..+ +| .|++++|-.+++|....|.|+++||+- ++.|+...+.+.+
T Consensus 87 ------------~~~-------~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~ 141 (476)
T 2ce7_A 87 ------------ELF-------VG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQ 141 (476)
T ss_dssp ------------TCC-------TT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHH
T ss_pred ------------HHH-------hc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHH
Confidence 000 11 278899999999999999999999994 3566665544443
Q ss_pred HHHhh----ccCCCEEEEEcCCcchhh
Q 001055 330 RCIRG----ELSGKTRVLVTNQLHFLS 352 (1171)
Q Consensus 330 ~l~~~----~~~~~tvi~vtH~~~~l~ 352 (1171)
.+... ...+..+|.+||+++.++
T Consensus 142 LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 142 LLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred HHHHHhccCCCCCEEEEEecCChhhhc
Confidence 33221 123567888999987765
No 310
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.13 E-value=1.8e-07 Score=102.10 Aligned_cols=52 Identities=17% Similarity=0.302 Sum_probs=35.9
Q ss_pred cEEEEee-EEEeCCCCCCcceeeeEEEcC---CCEEEEECCCCCcHHHHHHHHhcCC
Q 001055 786 SIKFEDV-VLRYRPELPPVLHGLSFTIPP---SDKVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 786 ~i~~~~v-s~~y~~~~~~~l~~vs~~i~~---Ge~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
.++++|+ +|+|++. .++|+|+||+|.+ |++++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~~~-~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDEE-QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecCc-chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4899999 9999322 3799999999999 9999999999999999999999865
No 311
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.13 E-value=9.1e-09 Score=114.72 Aligned_cols=118 Identities=22% Similarity=0.219 Sum_probs=72.8
Q ss_pred EEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcccee------------cCcEEEE
Q 001055 165 IRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVI------------RGTVAYV 232 (1171)
Q Consensus 165 ~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~------------~~~i~~v 232 (1171)
++++.+.|. ...+++++++.+++| ++|+||||||||||+++|+|... .+.+... ...++++
T Consensus 52 l~~l~~~~~---~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~ 124 (278)
T 1iy2_A 52 LKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 124 (278)
T ss_dssp HHHHHHHHH---CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHH
T ss_pred HHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHH
Confidence 455555553 235899999999999 99999999999999999999875 2221110 1124555
Q ss_pred ecCCC-C-CcccHHHHH-hcCCCCC------HHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHh
Q 001055 233 PQVSW-I-FNATVRDNI-LFGSAFE------PARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV 303 (1171)
Q Consensus 233 ~Q~~~-l-~~~Tv~eni-~~g~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL 303 (1171)
+|... . ...++.|+| .++.... .+...+. +..+ ...|||||+||+.+++|+
T Consensus 125 ~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~---------~~~l-----------l~~lsgg~~~~~~i~~a~ 184 (278)
T 1iy2_A 125 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT---------LNQL-----------LVEMDGFEKDTAIVVMAA 184 (278)
T ss_dssp HHHHHTSCSEEEEEETHHHHHCC--------CHHHHHH---------HHHH-----------HHHHTTCCTTCCEEEEEE
T ss_pred HHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHH---------HHHH-----------HHHHhCCCCCCCEEEEEe
Confidence 55542 2 234555555 2221100 0011111 1111 126899999999999999
Q ss_pred ccCCCE
Q 001055 304 YSNSDV 309 (1171)
Q Consensus 304 ~~~~~v 309 (1171)
..+|++
T Consensus 185 t~~p~~ 190 (278)
T 1iy2_A 185 TNRPDI 190 (278)
T ss_dssp ESCTTS
T ss_pred cCCchh
Confidence 999876
No 312
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.13 E-value=2.2e-07 Score=101.46 Aligned_cols=53 Identities=23% Similarity=0.265 Sum_probs=36.1
Q ss_pred CcEEEEee-EEEcCCCCCCCceeeeeEEecC---CCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 161 PAISIRNG-YFSWDSKAERPTLLNINLDIPV---GSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 161 ~~i~~~~~-s~~~~~~~~~~~l~~isl~i~~---Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+.++++|+ +|+|. .+.++|+|+||++++ |++++|+|++||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~~--~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFD--EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEec--CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 36899999 99993 245799999999999 9999999999999999999999865
No 313
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.13 E-value=1.1e-06 Score=101.33 Aligned_cols=143 Identities=23% Similarity=0.224 Sum_probs=82.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC-----------CCCceEEECCEecCCCChHHHhhheEEEcCCccc----ccccHHh
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIVE-----------LERGRILIDGFDIAKFGLMDLRKILGIIPQSPVL----FSGTVRF 880 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~~-----------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l----f~~tv~~ 880 (1171)
+++|+|++|||||||++.|+|... |..|.|.++|.++. +....|++.+.|.- |..|..+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl~~ 254 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTLSE 254 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHHHH
Confidence 499999999999999999999865 67799999987652 22345666654421 2222221
Q ss_pred -----hccC-CC-CCCHHHHHHHHHHhcHHHHHHHcc-CCc-chhhhcCCCCCChhHHHHHHHH----HHh-ccCCCEEE
Q 001055 881 -----NLDP-FS-EHSDADLWEALERAHLKDAIRRNS-LGL-DAQVSEAGENFSVGQRQLLSLS----RAL-LRRSKILV 946 (1171)
Q Consensus 881 -----nl~~-~~-~~~~~~i~~~l~~~~~~~~i~~lp-~gl-~~~~~~~~~~LSgGqkqrl~lA----ral-l~~p~iLl 946 (1171)
.+.+ ++ ........+.++. ..+.+..+. .+. --.+......+|+|++||+.++ +++ ..+|++
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~--~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~-- 330 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQS--SFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV-- 330 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHH--HHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE--
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHH--HHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE--
Confidence 1111 11 1111111111111 122333321 111 1122344556888888888877 666 444554
Q ss_pred EecCCcCCCHHHHHHHHHHHHHHc
Q 001055 947 LDEATAAVDVRTDALIQKTIREEF 970 (1171)
Q Consensus 947 LDEpTs~LD~~t~~~i~~~l~~~~ 970 (1171)
+|+|++|......+.+.|.+..
T Consensus 331 --~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 331 --IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp --EECBTTTTBSHHHHHHHHHHHH
T ss_pred --EEEECCCCcCHHHHHHHHHHHh
Confidence 8999999999999988887643
No 314
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.11 E-value=1.1e-07 Score=100.39 Aligned_cols=60 Identities=15% Similarity=0.298 Sum_probs=46.1
Q ss_pred eeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceE--EECCEecC
Q 001055 791 DVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI--LIDGFDIA 853 (1171)
Q Consensus 791 ~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I--~i~g~~i~ 853 (1171)
|++..++. ..+.+..++..++|++++|+|||||||||++++|++.+. ..|.+ .++|.++.
T Consensus 4 ~~~~~~~~--~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 4 NIKWHECS--VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp ------CC--CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCcccccc--cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 45554433 257788888889999999999999999999999999988 78988 88876553
No 315
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.10 E-value=9.5e-08 Score=114.35 Aligned_cols=137 Identities=16% Similarity=0.164 Sum_probs=95.0
Q ss_pred EEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEE
Q 001055 788 KFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGII 867 (1171)
Q Consensus 788 ~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v 867 (1171)
+++++...|.. +.+++++++.+++| +.|+||+|+|||||+++|++... .|.|.++|.++........++++..+
T Consensus 42 ~l~~lv~~l~~--~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~l 115 (499)
T 2dhr_A 42 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 115 (499)
T ss_dssp HHHHHHHHHHC--GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHH
T ss_pred HHHHHHHHhhc--hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHH
Confidence 34555545543 25889999999999 99999999999999999999875 78999999887665445556677788
Q ss_pred cCCcc-cccc-cHHhhccCCCCC-------CHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHh
Q 001055 868 PQSPV-LFSG-TVRFNLDPFSEH-------SDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRAL 938 (1171)
Q Consensus 868 ~Q~~~-lf~~-tv~~nl~~~~~~-------~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lAral 938 (1171)
+|... .... .+.++++..... ..++..+.+ .+++. .||||++|+..+++|.
T Consensus 116 fq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l-----~~LL~---------------~Ldg~~~~~~viviAa 175 (499)
T 2dhr_A 116 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV---------------EMDGFEKDTAIVVMAA 175 (499)
T ss_dssp TTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHH-----HHHHH---------------HGGGCCSSCCCEEEEC
T ss_pred HHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHH-----HHHHH---------------HhcccccCccEEEEEe
Confidence 88764 2222 455666432210 112222211 12221 3788999999999999
Q ss_pred ccCCCEEEEecCCc
Q 001055 939 LRRSKILVLDEATA 952 (1171)
Q Consensus 939 l~~p~iLlLDEpTs 952 (1171)
.++|++ ||||..
T Consensus 176 tn~p~~--LD~aLl 187 (499)
T 2dhr_A 176 TNRPDI--LDPALL 187 (499)
T ss_dssp CSCGGG--SCTTTS
T ss_pred cCChhh--cCcccc
Confidence 999987 898875
No 316
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.10 E-value=9e-07 Score=93.46 Aligned_cols=62 Identities=10% Similarity=0.055 Sum_probs=40.3
Q ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCccc
Q 001055 809 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVL 873 (1171)
Q Consensus 809 ~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 873 (1171)
++|++|++++|+|||||||||++++|.+.+.|+.| +.+ +....... ...+..++|++|++..
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~ 62 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDA 62 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHH
Confidence 46889999999999999999999999999977655 212 22222111 1122347777777643
No 317
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.07 E-value=7.5e-07 Score=100.91 Aligned_cols=68 Identities=16% Similarity=0.212 Sum_probs=54.5
Q ss_pred cceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCCh----HHH-----hhheEEE-cCC
Q 001055 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGL----MDL-----RKILGII-PQS 870 (1171)
Q Consensus 803 ~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~----~~~-----r~~i~~v-~Q~ 870 (1171)
++++++|++++|++++|+|+||+||||++..|++.+.+.+|+|.+.+.|+..... ..+ +..+.++ +|.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 3467888899999999999999999999999999999999999999888754321 223 4567888 554
No 318
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.07 E-value=4.2e-06 Score=95.76 Aligned_cols=59 Identities=22% Similarity=0.185 Sum_probs=44.6
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceE-EECCEecCCCChHHHhhheEEEcCCc
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI-LIDGFDIAKFGLMDLRKILGIIPQSP 871 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I-~i~g~~i~~~~~~~~r~~i~~v~Q~~ 871 (1171)
-+++|+++.|.||+|||||||+..+++...+..|.+ ++++.... ...+.+++|+.+|+.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~---~~~ra~rlgv~~~~l 116 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL---DPVYAKNLGVDLKSL 116 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC---CHHHHHHHTCCGGGC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc---chHHHHHcCCchhhh
Confidence 588999999999999999999999999988877865 66654322 122445677766654
No 319
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.05 E-value=2.2e-06 Score=90.62 Aligned_cols=70 Identities=16% Similarity=0.198 Sum_probs=45.7
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhh---hhcCEEEEEeC
Q 001055 924 FSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI---IDCDRILLLDS 996 (1171)
Q Consensus 924 LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~---~~~d~i~vl~~ 996 (1171)
.+.|+.+|..+++.+..+|..+-.+ ++.++|...+.+.+.+... .+.++|+.+|.+.+. ..||.+++++-
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 4678999999999998888644332 4456777777777766543 356888889988664 34999988853
No 320
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.04 E-value=2.6e-06 Score=88.92 Aligned_cols=37 Identities=22% Similarity=0.236 Sum_probs=33.0
Q ss_pred HHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHh
Q 001055 295 QRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 333 (1171)
Q Consensus 295 qRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~ 333 (1171)
+.+.+|++|+.+|+++++| ||++|......+++.+.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 4578899999999999999 999999999999987654
No 321
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.03 E-value=2.8e-07 Score=99.01 Aligned_cols=50 Identities=20% Similarity=0.335 Sum_probs=40.6
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCcc
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDAS 222 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~ 222 (1171)
.++++|++..+. . +|++.+ ++++|+||||||||||+++|+|.++|++|.+
T Consensus 9 ~l~l~~~~~~~~---------~-~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i 58 (227)
T 1qhl_A 9 SLTLINWNGFFA---------R-TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLL 58 (227)
T ss_dssp EEEEEEETTEEE---------E-EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC
T ss_pred EEEEEeeecccC---------C-EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeE
Confidence 477888755442 1 566666 8999999999999999999999999998754
No 322
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.03 E-value=7.6e-06 Score=94.56 Aligned_cols=42 Identities=31% Similarity=0.540 Sum_probs=31.9
Q ss_pred CCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhc--CCCCCCCcc
Q 001055 178 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLG--ELPPVSDAS 222 (1171)
Q Consensus 178 ~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G--~~~~~~g~~ 222 (1171)
..+|++++++++ .++|||++|||||||++.|+| .+++.+|.+
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~v 67 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV 67 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSC
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcc
Confidence 358999999999 999999999999999999999 556555543
No 323
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.01 E-value=5e-06 Score=105.30 Aligned_cols=68 Identities=12% Similarity=0.098 Sum_probs=54.8
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEecCCc-CCCHHHHHHHHHHHHHHcCC-cEEEE-EecChhhhhh-cC
Q 001055 922 ENFSVGQRQLLSLSRALLRRSKILVLDEATA-AVDVRTDALIQKTIREEFKS-CTMLI-IAHRLNTIID-CD 989 (1171)
Q Consensus 922 ~~LSgGqkqrl~lArall~~p~iLlLDEpTs-~LD~~t~~~i~~~l~~~~~~-~tvi~-vtH~~~~~~~-~d 989 (1171)
.-+|+|+.+|..+++.++.+++++|+|||.. ++|.+....+.+.+.....+ +++++ .||+.+.+.. ++
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~ 260 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFN 260 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTT
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhc
Confidence 3588999999999999999999999999996 99988777777777666544 56666 4898877655 44
No 324
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.01 E-value=1.4e-06 Score=92.23 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=38.6
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccc
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSG 876 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ 876 (1171)
++++|++++|+|++||||||+++.|.+.++ .+.+++||+.++.+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~ 60 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE 60 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH
Confidence 678899999999999999999999999874 37888999888765
No 325
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.98 E-value=1.3e-06 Score=110.61 Aligned_cols=146 Identities=15% Similarity=0.132 Sum_probs=85.9
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCC-CCcccHHHHHhcCCCCCHHHHHHHHHHc
Q 001055 187 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSW-IFNATVRDNILFGSAFEPARYEKAIDVT 265 (1171)
Q Consensus 187 ~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~-l~~~Tv~eni~~g~~~~~~~~~~~~~~~ 265 (1171)
.+..|+.++|+||+||||||++.++++...+..|. ...+.++ | |. .....+.+.+ .+..
T Consensus 105 ~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~----g~~ilvl-~-P~r~La~q~~~~l--------------~~~~ 164 (773)
T 2xau_A 105 LYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLE----NTQVACT-Q-PRRVAAMSVAQRV--------------AEEM 164 (773)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGG----TCEEEEE-E-SCHHHHHHHHHHH--------------HHHT
T ss_pred HHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCC----CceEEec-C-chHHHHHHHHHHH--------------HHHh
Confidence 35678999999999999999999887765443320 1112222 1 11 0000111111 1111
Q ss_pred Cch--HHHh-cCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCC-CCCHHHHHHHHHHHHhhccCCCEE
Q 001055 266 SLQ--HDLD-LLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS-ALDAHVGRQVFDRCIRGELSGKTR 341 (1171)
Q Consensus 266 ~l~--~~~~-~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts-~LD~~~~~~l~~~l~~~~~~~~tv 341 (1171)
+.. .... .........-+....-+|+|+.+|..+++.++.+++++|+|||.. +||......++..+.......+++
T Consensus 165 ~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iI 244 (773)
T 2xau_A 165 DVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKII 244 (773)
T ss_dssp TCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred CCchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEE
Confidence 100 0000 000000000112234689999999999999999999999999997 899887766666665444345677
Q ss_pred EE-EcCCcchhh
Q 001055 342 VL-VTNQLHFLS 352 (1171)
Q Consensus 342 i~-vtH~~~~l~ 352 (1171)
++ .||+.+.+.
T Consensus 245 l~SAT~~~~~l~ 256 (773)
T 2xau_A 245 IMSATLDAEKFQ 256 (773)
T ss_dssp EEESCSCCHHHH
T ss_pred EEeccccHHHHH
Confidence 77 599877654
No 326
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.97 E-value=4.1e-06 Score=86.62 Aligned_cols=38 Identities=32% Similarity=0.453 Sum_probs=34.5
Q ss_pred eeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCC
Q 001055 182 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 220 (1171)
Q Consensus 182 ~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g 220 (1171)
+++++++.+| +++|+||||||||||+++|.+.+.+..+
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~ 55 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSA 55 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcc
Confidence 6789999999 9999999999999999999998877654
No 327
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.97 E-value=2.2e-07 Score=99.86 Aligned_cols=115 Identities=19% Similarity=0.151 Sum_probs=67.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHhcCC---CCCCCccce---------------------ecCcEEEEecCC------CCCc
Q 001055 191 GSLVAIVGGTGEGKTSLISAMLGEL---PPVSDASAV---------------------IRGTVAYVPQVS------WIFN 240 (1171)
Q Consensus 191 Ge~v~lvG~nGsGKSTLl~~l~G~~---~~~~g~~~~---------------------~~~~i~~v~Q~~------~l~~ 240 (1171)
+.+++|+|++||||||++++|++.+ .+++|.... +...+++++|++ .+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5689999999999999999999876 455443221 122367777765 2345
Q ss_pred ccHHHHHhcCCCCCHHHHHHHHHHcCchHHHhcCCCCCcccc-CCCCCccChHHHHHHHHHHHhccCCCEEEEeCcC
Q 001055 241 ATVRDNILFGSAFEPARYEKAIDVTSLQHDLDLLPGGDVTEI-GERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL 316 (1171)
Q Consensus 241 ~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i-~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpt 316 (1171)
.+|.+++. .+++..++..+.....+.....+..+.+ ..++.-++|+ .++++++.+++++++.++.
T Consensus 85 ~~v~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~ 150 (227)
T 1cke_A 85 EDVSGEIR------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDAS 150 (227)
T ss_dssp EECHHHHT------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECC
T ss_pred eeCchhhC------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCC
Confidence 57777763 2334444444444433322111111111 1234456665 3555677788888887764
No 328
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.96 E-value=1.3e-06 Score=90.45 Aligned_cols=66 Identities=15% Similarity=0.169 Sum_probs=47.5
Q ss_pred eeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCE--ecCCCChH----HHhhheEEEcCCc
Q 001055 805 HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGF--DIAKFGLM----DLRKILGIIPQSP 871 (1171)
Q Consensus 805 ~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~--~i~~~~~~----~~r~~i~~v~Q~~ 871 (1171)
+++++++.+| +++|+||||||||||+++|.+++.+..|.....+. ++-..... ..+..|.+++|++
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~ 89 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNE 89 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCC
Confidence 7889999999 99999999999999999999998887775433221 11111100 1344688888886
No 329
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.96 E-value=3e-06 Score=89.21 Aligned_cols=45 Identities=22% Similarity=0.179 Sum_probs=24.9
Q ss_pred EcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 171 SWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 171 ~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+|+.++..+.++||||++++|++++|+|++||||||+.+.|++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 455555678999999999999999999999999999999999765
No 330
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.95 E-value=1.9e-05 Score=92.58 Aligned_cols=40 Identities=18% Similarity=0.191 Sum_probs=35.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEec
Q 001055 813 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI 852 (1171)
Q Consensus 813 ~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i 852 (1171)
++.+++++|++|+||||++..|++.+.+..++|.+-+.|+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 5789999999999999999999999999889998866654
No 331
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.94 E-value=1.8e-05 Score=91.26 Aligned_cols=121 Identities=17% Similarity=0.124 Sum_probs=74.2
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCCCCCCCccce-ecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchHH
Q 001055 192 SLVAIVGGTGEGKTSLISAMLGELPPVSDASAV-IRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQHD 270 (1171)
Q Consensus 192 e~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~-~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~~ 270 (1171)
-.++++|++|+|||||++.|+|......+.... ..-.++.++++..- +.
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~--------~~---------------------- 217 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFR--------YQ---------------------- 217 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEE--------EE----------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCce--------EE----------------------
Confidence 378999999999999999999975321111000 01123444332110 00
Q ss_pred HhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEe-CcCCCCCHHHHHHHHHHHHhhccCCCEEEEEc--CC
Q 001055 271 LDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFD-DPLSALDAHVGRQVFDRCIRGELSGKTRVLVT--NQ 347 (1171)
Q Consensus 271 ~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLD-Epts~LD~~~~~~l~~~l~~~~~~~~tvi~vt--H~ 347 (1171)
+-..|+.. ......+|+|++|++. +.+...++-++++| +|.+++|......+++.+.... .++.+|+|. ||
T Consensus 218 l~Dt~G~~----~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-~~~piilV~NK~D 291 (357)
T 2e87_A 218 IIDTPGLL----DRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-KDLPFLVVINKID 291 (357)
T ss_dssp EEECTTTS----SSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-TTSCEEEEECCTT
T ss_pred EEeCCCcc----ccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-CCCCEEEEEECcc
Confidence 00011111 1123468999998886 55555777789999 9999999988777776655432 267788887 66
Q ss_pred c
Q 001055 348 L 348 (1171)
Q Consensus 348 ~ 348 (1171)
+
T Consensus 292 l 292 (357)
T 2e87_A 292 V 292 (357)
T ss_dssp T
T ss_pred c
Confidence 4
No 332
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.91 E-value=2e-05 Score=90.95 Aligned_cols=61 Identities=13% Similarity=0.209 Sum_probs=48.5
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEe-cCCcCCCHHHHHHHHHHHHHHcCCcEEEEEe--cChh
Q 001055 922 ENFSVGQRQLLSLSRALLRRSKILVLD-EATAAVDVRTDALIQKTIREEFKSCTMLIIA--HRLN 983 (1171)
Q Consensus 922 ~~LSgGqkqrl~lArall~~p~iLlLD-EpTs~LD~~t~~~i~~~l~~~~~~~tvi~vt--H~~~ 983 (1171)
..+|+|++|++. +.+...++-++++| ++++++|.+....+.+.+.....+..+|+|. ||+.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 458999998876 55555666788999 9999999999888888887765577888888 7764
No 333
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.84 E-value=2.5e-06 Score=88.89 Aligned_cols=28 Identities=29% Similarity=0.610 Sum_probs=25.5
Q ss_pred CCEEEEEcCCCccHHHHHHHHhcCCCCC
Q 001055 191 GSLVAIVGGTGEGKTSLISAMLGELPPV 218 (1171)
Q Consensus 191 Ge~v~lvG~nGsGKSTLl~~l~G~~~~~ 218 (1171)
|++++|+||||||||||+++|+|++++.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~ 28 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCcc
Confidence 6789999999999999999999998743
No 334
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.84 E-value=1.7e-06 Score=93.38 Aligned_cols=62 Identities=24% Similarity=0.219 Sum_probs=45.7
Q ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCC------ChHH----HhhheEEEcCCcccc
Q 001055 809 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF------GLMD----LRKILGIIPQSPVLF 874 (1171)
Q Consensus 809 ~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~------~~~~----~r~~i~~v~Q~~~lf 874 (1171)
.+.++|++++|+|+|||||||++++|.|. +|+|.+.+.++... .... .++.+++++|.+.++
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~ 86 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTL 86 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHH
Confidence 34578999999999999999999999998 78999998775321 1111 134567777766544
No 335
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.78 E-value=9.6e-06 Score=85.46 Aligned_cols=35 Identities=20% Similarity=0.368 Sum_probs=29.3
Q ss_pred EEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCC
Q 001055 186 LDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 220 (1171)
Q Consensus 186 l~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g 220 (1171)
+++++|++++|+|||||||||++++|+|.+.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999966543
No 336
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.78 E-value=1.7e-06 Score=94.77 Aligned_cols=60 Identities=17% Similarity=0.145 Sum_probs=45.2
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHh---cCCCCCCCccc--------e-------------ecCcEEEEecCC------CC
Q 001055 189 PVGSLVAIVGGTGEGKTSLISAML---GELPPVSDASA--------V-------------IRGTVAYVPQVS------WI 238 (1171)
Q Consensus 189 ~~Ge~v~lvG~nGsGKSTLl~~l~---G~~~~~~g~~~--------~-------------~~~~i~~v~Q~~------~l 238 (1171)
++|++++|+|||||||||++++|+ |...+++|... . ++..+++++|.+ .+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 789999999999999999999999 98888776543 0 122477888643 34
Q ss_pred CcccHHHHHh
Q 001055 239 FNATVRDNIL 248 (1171)
Q Consensus 239 ~~~Tv~eni~ 248 (1171)
+..++.+||.
T Consensus 105 ~~~~v~~~i~ 114 (252)
T 4e22_A 105 EGEDVSNEIR 114 (252)
T ss_dssp TTEECTTGGG
T ss_pred CCeehhHHHH
Confidence 4567777664
No 337
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.77 E-value=1.9e-05 Score=83.42 Aligned_cols=70 Identities=14% Similarity=0.217 Sum_probs=44.5
Q ss_pred cChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchh---hhcCEEEEEeC
Q 001055 289 ISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFL---SQVDRIILVHE 362 (1171)
Q Consensus 289 LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l---~~~d~i~~l~~ 362 (1171)
.+.|+.+|..+++.++.+|+.+..+ .+.++|...+.+.+.+... .+.++|+.+|.+... ..+|.+++++-
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 4678999999999999888654333 4456777777766544322 356888888887553 45799998864
No 338
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.77 E-value=5.4e-05 Score=87.38 Aligned_cols=46 Identities=24% Similarity=0.393 Sum_probs=35.6
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhc--CCCCCCceEEECCE
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR--IVELERGRILIDGF 850 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g--~~~p~~G~I~i~g~ 850 (1171)
.+|++++++++ .|+|||++|||||||++.|.| ++++.+|.+.....
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~ 72 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPL 72 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCE
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcce
Confidence 48999999998 999999999999999999999 66777787654443
No 339
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.75 E-value=2.6e-05 Score=88.56 Aligned_cols=126 Identities=17% Similarity=0.126 Sum_probs=79.1
Q ss_pred CceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHH
Q 001055 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARY 258 (1171)
Q Consensus 179 ~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~ 258 (1171)
+-|+.+.-.+++|+++.|.|++|+|||||+.-++..... . ...+.|++=+ ...+++
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~-~------g~~Vl~fSlE-----------------ms~~ql 89 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN-D------DRGVAVFSLE-----------------MSAEQL 89 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH-T------TCEEEEEESS-----------------SCHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-c------CCeEEEEeCC-----------------CCHHHH
Confidence 357776668999999999999999999999888765422 1 1235554432 122222
Q ss_pred -HHHH---HHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhh
Q 001055 259 -EKAI---DVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRG 334 (1171)
Q Consensus 259 -~~~~---~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~ 334 (1171)
.+.+ ....+.+... ..||+++++|++.|...+.++++++.|+|... +...+.....+.+
T Consensus 90 ~~Rlls~~~~v~~~~l~~--------------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s--i~~i~~~ir~l~~- 152 (338)
T 4a1f_A 90 ALRALSDLTSINMHDLES--------------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR--IEQIRLQLRKLKS- 152 (338)
T ss_dssp HHHHHHHHHCCCHHHHHH--------------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC--HHHHHHHHHHHHH-
T ss_pred HHHHHHHhhCCCHHHHhc--------------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc--HHHHHHHHHHHHH-
Confidence 1111 1112222111 26999999999999999999999999998654 3333333332222
Q ss_pred ccC-CCEEEEEcC
Q 001055 335 ELS-GKTRVLVTN 346 (1171)
Q Consensus 335 ~~~-~~tvi~vtH 346 (1171)
.. +..+|+|-|
T Consensus 153 -~~gg~~lIVIDy 164 (338)
T 4a1f_A 153 -QHKELGIAFIDY 164 (338)
T ss_dssp -HCTTEEEEEEEE
T ss_pred -hcCCCCEEEEec
Confidence 12 466666654
No 340
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.75 E-value=5e-07 Score=101.99 Aligned_cols=126 Identities=12% Similarity=0.152 Sum_probs=71.7
Q ss_pred CceeeeeEEecCCC------EEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHh----
Q 001055 179 PTLLNINLDIPVGS------LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNIL---- 248 (1171)
Q Consensus 179 ~~l~~isl~i~~Ge------~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~---- 248 (1171)
..|++++..+..++ ++||+||||||||||+++|.|++.+..+ .+.+++++++.........+...
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~-----~~~v~~i~~D~f~~~~~~l~~~~~~~~ 148 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPD-----HPNVEVITTDGFLYSNAKLEKQGLMKR 148 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTT-----CCCEEEEEGGGGBCCHHHHHHTTCGGG
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCC-----CCeEEEEeecccccchhhhhhHHHHhh
Confidence 35566666666655 8999999999999999999999864211 23588999998776544444321
Q ss_pred cCCC--CCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCH
Q 001055 249 FGSA--FEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDA 321 (1171)
Q Consensus 249 ~g~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~ 321 (1171)
+|.+ ++.+...+.++. +..|..+ +.- -..|-+..+|+.-+......|+|+|++.+..-.|+
T Consensus 149 ~g~P~~~D~~~l~~~L~~---------L~~g~~~-v~~--P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~ 211 (321)
T 3tqc_A 149 KGFPESYDMPSLLRVLNA---------IKSGQRN-VRI--PVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTG 211 (321)
T ss_dssp TTSGGGBCHHHHHHHHHH---------HHTTCSS-EEE--EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred ccCcccccHHHHHHHHHh---------hhccccc-ccc--chhhhhccccccCceeeccCCCEEEEEcccccccc
Confidence 2221 233333333221 1112100 000 01222233333223345578999999999875554
No 341
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.75 E-value=6.3e-06 Score=87.43 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=27.6
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 001055 812 PPSDKVGIVGRTGAGKSSMLNTLFRIVEL 840 (1171)
Q Consensus 812 ~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p 840 (1171)
++|++++|+||||||||||++.|++.++|
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999876
No 342
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.72 E-value=3.8e-05 Score=87.20 Aligned_cols=131 Identities=15% Similarity=0.125 Sum_probs=79.3
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhh
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN 881 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~n 881 (1171)
+.|+.+.--+.+|+.+.|.|++|+|||||+.-++.......+.|.+- +
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~f-------------------S------------- 81 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVF-------------------S------------- 81 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEE-------------------E-------------
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE-------------------e-------------
Confidence 35777766799999999999999999999988876544333333321 1
Q ss_pred ccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcCCCHHHHHH
Q 001055 882 LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAAVDVRTDAL 961 (1171)
Q Consensus 882 l~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~LD~~t~~~ 961 (1171)
.+.+.+++..-+-.. .. ...++.... ..||+++.+|+..|...+.+++++|.|+|+.. +.....
T Consensus 82 ----lEms~~ql~~Rlls~-----~~--~v~~~~l~~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s--i~~i~~ 145 (338)
T 4a1f_A 82 ----LEMSAEQLALRALSD-----LT--SINMHDLES---GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR--IEQIRL 145 (338)
T ss_dssp ----SSSCHHHHHHHHHHH-----HH--CCCHHHHHH---TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC--HHHHHH
T ss_pred ----CCCCHHHHHHHHHHH-----hh--CCCHHHHhc---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc--HHHHHH
Confidence 011223322211100 00 011111111 26999999999999999999999999998654 333333
Q ss_pred HHHHHHHHcCCcEEEEEec
Q 001055 962 IQKTIREEFKSCTMLIIAH 980 (1171)
Q Consensus 962 i~~~l~~~~~~~tvi~vtH 980 (1171)
..+.+.+...+..+|+|-|
T Consensus 146 ~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 146 QLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHHhcCCCCEEEEec
Confidence 3333333222566777643
No 343
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.70 E-value=1.5e-05 Score=83.70 Aligned_cols=38 Identities=21% Similarity=0.255 Sum_probs=25.0
Q ss_pred CCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Q 001055 801 PPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 801 ~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
..+++||||++++|++++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36899999999999999999999999999999999876
No 344
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.63 E-value=1.4e-05 Score=84.36 Aligned_cols=45 Identities=18% Similarity=0.164 Sum_probs=39.2
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCC
Q 001055 811 IPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKF 855 (1171)
Q Consensus 811 i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~ 855 (1171)
.++|++++|+|+|||||||+++.|.+.+++.+|.|.+.+.|....
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~ 63 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIV 63 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccC
Confidence 567999999999999999999999999999899998876665443
No 345
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.63 E-value=6.8e-05 Score=78.49 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=31.0
Q ss_pred HHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHh
Q 001055 297 VSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIR 333 (1171)
Q Consensus 297 v~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~ 333 (1171)
...|++++.+|++.++| ||++|+.....+++.+.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 45689999999999999 999999999999887765
No 346
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.61 E-value=3.1e-06 Score=102.50 Aligned_cols=43 Identities=26% Similarity=0.234 Sum_probs=38.4
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc-eEE-ECCEec
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG-RIL-IDGFDI 852 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G-~I~-i~g~~i 852 (1171)
.+++|++++|+|+||||||||+++|+|.+.|++| +|. +||.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 5789999999999999999999999999999987 674 888654
No 347
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.60 E-value=0.00021 Score=82.80 Aligned_cols=127 Identities=11% Similarity=0.143 Sum_probs=69.9
Q ss_pred cCCC--EEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcC
Q 001055 189 PVGS--LVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTS 266 (1171)
Q Consensus 189 ~~Ge--~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~ 266 (1171)
..+. .+.|.||+|+|||||++.+++...+.. ...+.++.-.+......+ +...++..+
T Consensus 40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~------~~~~~~i~~~~~~~~~~~--------------~~~l~~~l~ 99 (389)
T 1fnn_A 40 PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT------TARFVYINGFIYRNFTAI--------------IGEIARSLN 99 (389)
T ss_dssp TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC------CCEEEEEETTTCCSHHHH--------------HHHHHHHTT
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc------CeeEEEEeCccCCCHHHH--------------HHHHHHHhC
Confidence 3456 899999999999999999999876642 112334432111100111 112222111
Q ss_pred chHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHh--ccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc---CCCEE
Q 001055 267 LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAV--YSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL---SGKTR 341 (1171)
Q Consensus 267 l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL--~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~---~~~tv 341 (1171)
. + ... ...+.++.... +...+ ..+|.++++||+... |+.....+...+..... .+.++
T Consensus 100 ~-------~------~~~--~~~~~~~~~~~-l~~~l~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~i 162 (389)
T 1fnn_A 100 I-------P------FPR--RGLSRDEFLAL-LVEHLRERDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIAL 162 (389)
T ss_dssp C-------C------CCS--SCCCHHHHHHH-HHHHHHHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEE
T ss_pred c-------c------CCC--CCCCHHHHHHH-HHHHHhhcCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEE
Confidence 0 0 001 12233332221 11222 245789999999876 88887777665433222 46788
Q ss_pred EEEcCCcchhh
Q 001055 342 VLVTNQLHFLS 352 (1171)
Q Consensus 342 i~vtH~~~~l~ 352 (1171)
|++||+.++..
T Consensus 163 I~~~~~~~~~~ 173 (389)
T 1fnn_A 163 VIVGHNDAVLN 173 (389)
T ss_dssp EEEESSTHHHH
T ss_pred EEEECCchHHH
Confidence 99999886543
No 348
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.59 E-value=1e-05 Score=91.89 Aligned_cols=55 Identities=20% Similarity=0.224 Sum_probs=49.5
Q ss_pred CccEEEEeeEEEeCCCCCCcce--------------eeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 001055 784 SGSIKFEDVVLRYRPELPPVLH--------------GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 784 ~g~i~~~~vs~~y~~~~~~~l~--------------~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
.+.+.|+||++.|+.. +..|+ |+.+.+.+|++++|+||+|+|||||++.|.+...
T Consensus 131 ~~ri~Fe~ltp~yP~e-r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 131 RNKILFENLTPLHANS-RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp TTSCCTTTSCEESCCS-BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCC-ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 4679999999999865 46888 8999999999999999999999999999998763
No 349
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.56 E-value=0.00011 Score=85.03 Aligned_cols=45 Identities=18% Similarity=0.114 Sum_probs=34.6
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHHc----CCcEEEEEecChhhh
Q 001055 940 RRSKILVLDEATAAVDVRTDALIQKTIREEF----KSCTMLIIAHRLNTI 985 (1171)
Q Consensus 940 ~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~----~~~tvi~vtH~~~~~ 985 (1171)
.+|.||+|||+... |......+.+.+.+.. .+.++|++||+.+..
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 45789999999886 8888887777775433 367899999998544
No 350
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.55 E-value=3e-05 Score=80.15 Aligned_cols=29 Identities=14% Similarity=0.439 Sum_probs=26.6
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHhcCCCC
Q 001055 189 PVGSLVAIVGGTGEGKTSLISAMLGELPP 217 (1171)
Q Consensus 189 ~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~ 217 (1171)
.+|++++|+||||||||||+++|+|.+++
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~ 31 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPD 31 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 47899999999999999999999998864
No 351
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.53 E-value=5.1e-05 Score=80.10 Aligned_cols=45 Identities=22% Similarity=0.276 Sum_probs=39.2
Q ss_pred EEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcc
Q 001055 186 LDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNA 241 (1171)
Q Consensus 186 l~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~ 241 (1171)
=++++|.+++|+|++||||||+++.|++.++ .+.+++|++.++..
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------~~~~i~~D~~~~~~ 60 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------NCSVISQDDFFKPE 60 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------TEEEEEGGGGBCCG
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------CcEEEeCCccccCH
Confidence 4577899999999999999999999999874 37999999988754
No 352
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.52 E-value=6.2e-05 Score=85.55 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=25.5
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcC
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFRI 837 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g~ 837 (1171)
.+++|+++.|.||+|+|||||+..++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5789999999999999999999888764
No 353
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.51 E-value=4.6e-05 Score=90.35 Aligned_cols=67 Identities=18% Similarity=0.353 Sum_probs=44.0
Q ss_pred cCCCEEEEecCCcCCCH-HHHHHHHHHHHHHc-CCcEEEEEecCh-hhhhh-cCEEEE-EeCcEEEEecChh
Q 001055 940 RRSKILVLDEATAAVDV-RTDALIQKTIREEF-KSCTMLIIAHRL-NTIID-CDRILL-LDSGRVLEYDTPE 1006 (1171)
Q Consensus 940 ~~p~iLlLDEpTs~LD~-~t~~~i~~~l~~~~-~~~tvi~vtH~~-~~~~~-~d~i~v-l~~G~i~~~g~~~ 1006 (1171)
.+|++|++||+..-.+. .+...+...+.... .++.+|++||+. ..+.. .+++.- +..|.+++.+.|+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 38999999999887664 67777888877654 468899999984 33222 222222 3456666665543
No 354
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.47 E-value=2.9e-05 Score=96.71 Aligned_cols=123 Identities=17% Similarity=0.107 Sum_probs=70.6
Q ss_pred eEEecCCCEEEEEcCCCccHHHHHHHHhcCCCC--CCCccce-----------ecCcEEEEecCCCCCcccHHHHHhcCC
Q 001055 185 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELPP--VSDASAV-----------IRGTVAYVPQVSWIFNATVRDNILFGS 251 (1171)
Q Consensus 185 sl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~--~~g~~~~-----------~~~~i~~v~Q~~~l~~~Tv~eni~~g~ 251 (1171)
|+++++|..++|+|++|+|||||++.|+|...+ ..|.+.. .+..+++.+|...++..++..||.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nli--- 79 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLL--- 79 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEE---
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEE---
Confidence 467789999999999999999999999976544 2332200 012344444444333222222222
Q ss_pred CCCHHHHHHHHHHcCchHHHhcCCCCCccccCCCCC-ccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHH
Q 001055 252 AFEPARYEKAIDVTSLQHDLDLLPGGDVTEIGERGV-NISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDR 330 (1171)
Q Consensus 252 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~g~-~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~ 330 (1171)
+..|. .++ .......-..+..++++| |+.++++.+.+++ ..
T Consensus 80 -------------------------------DTpG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~~~-~~ 121 (665)
T 2dy1_A 80 -------------------------------DAPGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTERAW-TV 121 (665)
T ss_dssp -------------------------------ECCCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHHHH-HH
T ss_pred -------------------------------eCCCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHHHH-HH
Confidence 11110 111 111222224577788899 9999999987554 33
Q ss_pred HHhhccCCCEEEEEcCCcchh
Q 001055 331 CIRGELSGKTRVLVTNQLHFL 351 (1171)
Q Consensus 331 l~~~~~~~~tvi~vtH~~~~l 351 (1171)
+.. .+..+|++.|..+..
T Consensus 122 ~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 122 AER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHH---TTCCEEEEEECGGGC
T ss_pred HHH---ccCCEEEEecCCchh
Confidence 332 357888888876653
No 355
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.46 E-value=2.1e-05 Score=88.71 Aligned_cols=46 Identities=17% Similarity=0.318 Sum_probs=36.6
Q ss_pred CcceeeeEEEcCCC------EEEEECCCCCcHHHHHHHHhcCCC--CCCceEEE
Q 001055 802 PVLHGLSFTIPPSD------KVGIVGRTGAGKSSMLNTLFRIVE--LERGRILI 847 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge------~v~ivG~nGsGKSTLl~~l~g~~~--p~~G~I~i 847 (1171)
..|++++..+.+++ ++||+||||||||||+++|.+++. |++|.|.+
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~ 127 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV 127 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE
Confidence 35666666666665 899999999999999999999987 45666443
No 356
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.46 E-value=4.3e-05 Score=86.48 Aligned_cols=41 Identities=20% Similarity=0.256 Sum_probs=35.8
Q ss_pred eeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCc
Q 001055 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 221 (1171)
Q Consensus 181 l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~ 221 (1171)
+++++|++++|++++++|+||+||||++..|++.+.+..+.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~k 135 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYK 135 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCe
Confidence 46788889999999999999999999999999998776443
No 357
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.44 E-value=0.00013 Score=82.63 Aligned_cols=129 Identities=16% Similarity=0.144 Sum_probs=76.8
Q ss_pred CceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHH
Q 001055 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARY 258 (1171)
Q Consensus 179 ~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~ 258 (1171)
+.|+.+.-.+++|+++.|.|++|+|||||+.-++...-. .| ..+.|++=+ ...+++
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g------~~vl~~slE-----------------~s~~~l 111 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND------DVVNLHSLE-----------------MGKKEN 111 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT------CEEEEEESS-----------------SCHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC------CeEEEEECC-----------------CCHHHH
Confidence 467777777999999999999999999998887753211 11 235555433 122222
Q ss_pred H-HHHHH-cCchH-HHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhc
Q 001055 259 E-KAIDV-TSLQH-DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGE 335 (1171)
Q Consensus 259 ~-~~~~~-~~l~~-~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~ 335 (1171)
. +.... .+..- .+. .+ -..||+++++|+..|...+.++++++.|+|... +.........+.+
T Consensus 112 ~~R~~~~~~~i~~~~l~---~~--------~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~--~~~i~~~i~~l~~-- 176 (315)
T 3bh0_A 112 IKRLIVTAGSINAQKIK---AA--------RRDFASEDWGKLSMAIGEISNSNINIFDKAGQS--VNYIWSKTRQTKR-- 176 (315)
T ss_dssp HHHHHHHHTTCCHHHHH---SC--------HHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB--HHHHHHHHHHHHH--
T ss_pred HHHHHHHHcCCCHHHHh---cC--------CCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC--HHHHHHHHHHHHH--
Confidence 1 11111 11110 011 10 013999999999999999999999999998644 3332222222222
Q ss_pred cCCCE--EEEEcC
Q 001055 336 LSGKT--RVLVTN 346 (1171)
Q Consensus 336 ~~~~t--vi~vtH 346 (1171)
..+.. +|+|-|
T Consensus 177 ~~~~~~~lVVID~ 189 (315)
T 3bh0_A 177 KNPGKRVIVMIDY 189 (315)
T ss_dssp TSSSCCEEEEEEC
T ss_pred hcCCCCeEEEEeC
Confidence 12445 777765
No 358
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.43 E-value=2.2e-05 Score=89.16 Aligned_cols=52 Identities=21% Similarity=0.164 Sum_probs=47.4
Q ss_pred cEEEEeeEEEcCCCCCCCcee--------------eeeEEecCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 162 AISIRNGYFSWDSKAERPTLL--------------NINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~--------------~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
.+.|+|+++.|+. ++..|+ |+++.+.+|++++|+|++|||||||++.|++..
T Consensus 133 ri~Fe~ltp~yP~--er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHAN--SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCC--SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCC--CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 4789999999985 467888 899999999999999999999999999998865
No 359
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.42 E-value=4.4e-05 Score=78.23 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=33.3
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecC
Q 001055 812 PPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA 853 (1171)
Q Consensus 812 ~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~ 853 (1171)
.+|++++|+|+|||||||+++.|.+.+ |.+.+++.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 569999999999999999999999875 88899876654
No 360
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.42 E-value=0.00034 Score=81.79 Aligned_cols=148 Identities=16% Similarity=0.156 Sum_probs=85.2
Q ss_pred eeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHH-HhhheEEEcCCcccccccHHhhcc
Q 001055 805 HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMD-LRKILGIIPQSPVLFSGTVRFNLD 883 (1171)
Q Consensus 805 ~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~-~r~~i~~v~Q~~~lf~~tv~~nl~ 883 (1171)
++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+.|+......+ ++.. .-..|+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~-------------~~~~gv~ 155 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL-------------GEKVGVP 155 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH-------------HHHHTCC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh-------------cccCCcc
Confidence 567777 89999999999999999999999999999999999888775432221 1110 0012332
Q ss_pred CCC---CCCHHHHHHHHHHhcHHHHHHHc-cCCcchhhhcCCCCCC---hhHHHHHHHHHHhccCCCEEEEecCCcCCCH
Q 001055 884 PFS---EHSDADLWEALERAHLKDAIRRN-SLGLDAQVSEAGENFS---VGQRQLLSLSRALLRRSKILVLDEATAAVDV 956 (1171)
Q Consensus 884 ~~~---~~~~~~i~~~l~~~~~~~~i~~l-p~gl~~~~~~~~~~LS---gGqkqrl~lArall~~p~iLlLDEpTs~LD~ 956 (1171)
.+. .....++. .+.++.+ ..++|..+-+.+..++ ....+...+++++..++-+|++| ++++.|.
T Consensus 156 v~~~~~~~~p~~i~--------~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvD-a~tgq~a 226 (425)
T 2ffh_A 156 VLEVMDGESPESIR--------RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD-AMTGQEA 226 (425)
T ss_dssp EEECCTTCCHHHHH--------HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE-GGGTTHH
T ss_pred EEecCCCCCHHHHH--------HHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEe-ccchHHH
Confidence 211 11222321 1222222 2466654433333343 23556667777775555677788 5666555
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEec
Q 001055 957 RTDALIQKTIREEFKSCTMLIIAH 980 (1171)
Q Consensus 957 ~t~~~i~~~l~~~~~~~tvi~vtH 980 (1171)
... + +.+... -+.+-+++|+
T Consensus 227 v~~--a-~~f~~~-l~i~GVIlTK 246 (425)
T 2ffh_A 227 LSV--A-RAFDEK-VGVTGLVLTK 246 (425)
T ss_dssp HHH--H-HHHHHH-TCCCEEEEES
T ss_pred HHH--H-HHHHhc-CCceEEEEeC
Confidence 432 2 223221 2445666666
No 361
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.42 E-value=2.7e-05 Score=81.91 Aligned_cols=43 Identities=21% Similarity=0.192 Sum_probs=37.3
Q ss_pred CCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCc
Q 001055 178 RPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDA 221 (1171)
Q Consensus 178 ~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~ 221 (1171)
....+..++..++|++++|+|+|||||||++++|++.+. ..|.
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~ 54 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGK 54 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTC
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCc
Confidence 457788889999999999999999999999999999886 4443
No 362
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.41 E-value=5e-05 Score=87.56 Aligned_cols=48 Identities=19% Similarity=0.193 Sum_probs=36.1
Q ss_pred cCCCCCccChHHHHHHHHH----HHh-ccCCCEEEEeCcCCCCCHHHHHHHHHHHHh
Q 001055 282 IGERGVNISGGQKQRVSMA----RAV-YSNSDVFIFDDPLSALDAHVGRQVFDRCIR 333 (1171)
Q Consensus 282 i~~~g~~LSGGqrqRv~LA----raL-~~~~~vllLDEpts~LD~~~~~~l~~~l~~ 333 (1171)
+..+...+|+|+++|+.++ +++ ..+|++ +|+|++|......+++.+.+
T Consensus 298 V~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 298 TLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQ 350 (364)
T ss_dssp EEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHH
T ss_pred EEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHH
Confidence 3555567888899988877 666 444444 89999999999988887654
No 363
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.40 E-value=7.5e-05 Score=79.05 Aligned_cols=29 Identities=24% Similarity=0.425 Sum_probs=27.5
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHhcCCCC
Q 001055 189 PVGSLVAIVGGTGEGKTSLISAMLGELPP 217 (1171)
Q Consensus 189 ~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~ 217 (1171)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999876
No 364
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.39 E-value=0.00012 Score=83.86 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=25.7
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcC
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFRI 837 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g~ 837 (1171)
.+++|+++.|.||+|+|||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999988874
No 365
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.36 E-value=0.00048 Score=78.80 Aligned_cols=136 Identities=15% Similarity=0.156 Sum_probs=74.8
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHhcC--CCCCCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHH
Q 001055 187 DIPVGSLVAIVGGTGEGKTSLISAMLGE--LPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDV 264 (1171)
Q Consensus 187 ~i~~Ge~v~lvG~nGsGKSTLl~~l~G~--~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~ 264 (1171)
.+++|+++.|.||+|||||||+..++.. .++..|+ ..+.+.|+.-+..+. .+++.+.++.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg---~~~~vlyi~~E~~~~---------------~~~l~~~~~~ 179 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGY---PGGKIIFIDTENTFR---------------PDRLRDIADR 179 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTB---CCCEEEEEESSSCCC---------------HHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCC---CCCeEEEEECCCCCC---------------HHHHHHHHHH
Confidence 5889999999999999999999998875 3332222 123567776554321 2222222222
Q ss_pred cCchH--HHhcCCCCCccccCCCCCccChH-HHHHHHHHHHhc----cCCCEEEEeCcCCCCCHH-------H-----HH
Q 001055 265 TSLQH--DLDLLPGGDVTEIGERGVNISGG-QKQRVSMARAVY----SNSDVFIFDDPLSALDAH-------V-----GR 325 (1171)
Q Consensus 265 ~~l~~--~~~~~~~~~~~~i~~~g~~LSGG-qrqRv~LAraL~----~~~~vllLDEpts~LD~~-------~-----~~ 325 (1171)
.+... .++.+ . .. ...++. +.+.+..++.++ .+++++++|++++..+.. . ..
T Consensus 180 ~g~~~~~~l~~l---~--~~----~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~ 250 (343)
T 1v5w_A 180 FNVDHDAVLDNV---L--YA----RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLA 250 (343)
T ss_dssp TTCCHHHHHHTE---E--EE----ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHH
T ss_pred cCCCHHHHHhce---e--Ee----ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHH
Confidence 22111 11111 0 00 012232 234455555555 579999999999887542 1 22
Q ss_pred HHHHHHHhhc-cCCCEEEEEcCCcc
Q 001055 326 QVFDRCIRGE-LSGKTRVLVTNQLH 349 (1171)
Q Consensus 326 ~l~~~l~~~~-~~~~tvi~vtH~~~ 349 (1171)
.+...|.+.. ..+.++|++.|-..
T Consensus 251 ~~l~~L~~la~~~~~~Vi~~nq~~~ 275 (343)
T 1v5w_A 251 QMLSRLQKISEEYNVAVFVTNQMTA 275 (343)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECC--
T ss_pred HHHHHHHHHHHHhCCEEEEEeecee
Confidence 3333344333 23788888888543
No 366
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.34 E-value=0.0011 Score=75.77 Aligned_cols=50 Identities=24% Similarity=0.363 Sum_probs=37.3
Q ss_pred ceeeeeE--EecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCC
Q 001055 180 TLLNINL--DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 236 (1171)
Q Consensus 180 ~l~~isl--~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~ 236 (1171)
-|+.+-= .+++|+++.|.||+|||||||+..+++...+.. +.+.|+.-+.
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~g-------g~VlyId~E~ 99 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMG-------GVAAFIDAEH 99 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTT-------CCEEEEESSC
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcC-------CeEEEEeccc
Confidence 4554422 589999999999999999999999998765532 2456665543
No 367
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.30 E-value=4.6e-05 Score=85.67 Aligned_cols=147 Identities=20% Similarity=0.175 Sum_probs=77.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEE-CCEecCCCChHHHhhheEEEcCCccc--ccccHHhhccCCCCCC
Q 001055 813 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI-DGFDIAKFGLMDLRKILGIIPQSPVL--FSGTVRFNLDPFSEHS 889 (1171)
Q Consensus 813 ~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i-~g~~i~~~~~~~~r~~i~~v~Q~~~l--f~~tv~~nl~~~~~~~ 889 (1171)
++.+|+|+|++|+|||||++.|.|.. +.+ .+.+ .....+..|+++++..- |-.| ++ ..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~-----~tTr~~~~gi~~~~~~~i~~iDT------pG--~~ 67 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKA-----QTTRHRIVGIHTEGAYQAIYVDT------PG--LH 67 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCS-----SCCSSCEEEEEEETTEEEEEESS------SS--CC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCC-----CcceeeEEEEEEECCeeEEEEEC------cC--CC
Confidence 44589999999999999999999863 111 1111 11123446777776431 1111 11 11
Q ss_pred HHHHHHHHHHhcHHHHHHHcc---CCcchh--hhcCCCCCChhHHHHHHHHHHhc--cCCCEEEEecCCcCCCHHH-HHH
Q 001055 890 DADLWEALERAHLKDAIRRNS---LGLDAQ--VSEAGENFSVGQRQLLSLSRALL--RRSKILVLDEATAAVDVRT-DAL 961 (1171)
Q Consensus 890 ~~~i~~~l~~~~~~~~i~~lp---~gl~~~--~~~~~~~LSgGqkqrl~lArall--~~p~iLlLDEpTs~LD~~t-~~~ 961 (1171)
. .-...+.. .+..... ...|.. +-.... +|+|++ .+++.+. ..|.++++ |.+|... ...
T Consensus 68 ~-~~~~~l~~----~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~ 134 (301)
T 1ega_A 68 M-EEKRAINR----LMNKAASSSIGDVELVIFVVEGTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKAD 134 (301)
T ss_dssp H-HHHHHHHH----HHTCCTTSCCCCEEEEEEEEETTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHH
T ss_pred c-cchhhHHH----HHHHHHHHHHhcCCEEEEEEeCCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHH
Confidence 0 01111111 1111101 112221 122233 999886 4566665 67888888 7888876 556
Q ss_pred HHHHHHHHcC--C--cEEEEEecChhhhhh-cCEE
Q 001055 962 IQKTIREEFK--S--CTMLIIAHRLNTIID-CDRI 991 (1171)
Q Consensus 962 i~~~l~~~~~--~--~tvi~vtH~~~~~~~-~d~i 991 (1171)
+.+.+.++.. + .++.+.+|+-..+.. +|.+
T Consensus 135 ~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i 169 (301)
T 1ega_A 135 LLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIV 169 (301)
T ss_dssp HHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred HHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHH
Confidence 6666665543 2 356666776655544 4443
No 368
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.29 E-value=0.00011 Score=76.82 Aligned_cols=32 Identities=25% Similarity=0.516 Sum_probs=27.2
Q ss_pred eEEecCCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001055 185 NLDIPVGSLVAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 185 sl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
|+...+|++++|+||||||||||++.|++.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45566899999999999999999999999875
No 369
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.29 E-value=5e-05 Score=87.66 Aligned_cols=37 Identities=27% Similarity=0.278 Sum_probs=34.9
Q ss_pred CceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 179 ~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
.+++++++++++|++++|+||||||||||+++|+|..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5899999999999999999999999999999999864
No 370
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.28 E-value=0.00011 Score=77.27 Aligned_cols=31 Identities=23% Similarity=0.317 Sum_probs=25.0
Q ss_pred eEEecCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 185 NLDIPVGSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 185 sl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
.++.++|++++|+|+||||||||+++|+|.+
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4667899999999999999999999999876
No 371
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.26 E-value=5.7e-05 Score=86.41 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=38.4
Q ss_pred CcceeeeEEEcCCCE--EEEECCCCCcHHHHHHHHhcCCCCCCce
Q 001055 802 PVLHGLSFTIPPSDK--VGIVGRTGAGKSSMLNTLFRIVELERGR 844 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~--v~ivG~nGsGKSTLl~~l~g~~~p~~G~ 844 (1171)
.+++.++..+..|+. +.+.||+|+||||+++++++.+.+..+.
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~ 76 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYS 76 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCcc
Confidence 588999999999998 9999999999999999999998766554
No 372
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.21 E-value=5.7e-05 Score=91.93 Aligned_cols=60 Identities=20% Similarity=0.280 Sum_probs=48.5
Q ss_pred EEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEe
Q 001055 789 FEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFD 851 (1171)
Q Consensus 789 ~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~ 851 (1171)
++++...|... .+++++++++ +|+.++|+||||+|||||+++|++.+.+..|+|.++|..
T Consensus 86 ~~~vk~~i~~~--~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~ 145 (543)
T 3m6a_A 86 LEKVKERILEY--LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVR 145 (543)
T ss_dssp CHHHHHHHHHH--HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--
T ss_pred HHHHHHHHHHH--HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccc
Confidence 45555555432 4678888888 899999999999999999999999999999999888743
No 373
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.19 E-value=0.00028 Score=79.24 Aligned_cols=48 Identities=23% Similarity=0.316 Sum_probs=32.3
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHhcCCC-CCCCcc-ceecCcEEEEecCC
Q 001055 189 PVGSLVAIVGGTGEGKTSLISAMLGELP-PVSDAS-AVIRGTVAYVPQVS 236 (1171)
Q Consensus 189 ~~Ge~v~lvG~nGsGKSTLl~~l~G~~~-~~~g~~-~~~~~~i~~v~Q~~ 236 (1171)
.++.+++|+|++|+|||||++.|+|..- +.++.. .......+++.++.
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~ 55 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA 55 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC
Confidence 3445899999999999999999999742 122211 11233467777764
No 374
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.18 E-value=5.2e-05 Score=86.81 Aligned_cols=51 Identities=22% Similarity=0.302 Sum_probs=46.2
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEec
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI 852 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i 852 (1171)
.+++++++.+.+|.+++|+|++|+|||||++.|++.+.+.+|+|.+-+.|.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 478999999999999999999999999999999999998888888766554
No 375
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.16 E-value=0.00039 Score=80.19 Aligned_cols=30 Identities=30% Similarity=0.367 Sum_probs=26.1
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHhcCCCCC
Q 001055 189 PVGSLVAIVGGTGEGKTSLISAMLGELPPV 218 (1171)
Q Consensus 189 ~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~ 218 (1171)
..+..+.|.||+|+|||||++.+++...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999877543
No 376
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.16 E-value=0.00041 Score=78.41 Aligned_cols=108 Identities=16% Similarity=0.176 Sum_probs=65.4
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhh
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN 881 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~n 881 (1171)
+.|+++.--+++|+.+.|.|++|+|||||+.-++.-.-- .| ..+.|++=
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g------------------~~vl~~sl------------ 104 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND------------------DVVNLHSL------------ 104 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT------------------CEEEEEES------------
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC------------------CeEEEEEC------------
Confidence 467777767999999999999999999999877643211 11 01222211
Q ss_pred ccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcC
Q 001055 882 LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 953 (1171)
Q Consensus 882 l~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~ 953 (1171)
+.+.+++.+-+... .. ...+.... .....||+++++|+..|...+.++++++.|+|+..
T Consensus 105 -----E~s~~~l~~R~~~~-----~~--~i~~~~l~-~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~ 163 (315)
T 3bh0_A 105 -----EMGKKENIKRLIVT-----AG--SINAQKIK-AARRDFASEDWGKLSMAIGEISNSNINIFDKAGQS 163 (315)
T ss_dssp -----SSCHHHHHHHHHHH-----HT--TCCHHHHH-SCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB
T ss_pred -----CCCHHHHHHHHHHH-----Hc--CCCHHHHh-cCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 12233332221110 00 01111111 10012899999999999999999999999998743
No 377
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.12 E-value=0.00044 Score=79.73 Aligned_cols=31 Identities=19% Similarity=0.337 Sum_probs=26.9
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCC
Q 001055 812 PPSDKVGIVGRTGAGKSSMLNTLFRIVELER 842 (1171)
Q Consensus 812 ~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~ 842 (1171)
.++..+.|.||+|+|||||++.+.+.+.+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999876543
No 378
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.11 E-value=0.00011 Score=77.24 Aligned_cols=34 Identities=21% Similarity=0.168 Sum_probs=29.6
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCC
Q 001055 187 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 220 (1171)
Q Consensus 187 ~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g 220 (1171)
..++|++++|+|+||||||||++.|.+.+++..|
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~ 51 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGI 51 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTC
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence 3568899999999999999999999998876543
No 379
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.10 E-value=0.0012 Score=73.68 Aligned_cols=115 Identities=17% Similarity=0.127 Sum_probs=69.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchH
Q 001055 190 VGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 269 (1171)
Q Consensus 190 ~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~ 269 (1171)
++..+.|.||+|+||||+++++++.... .+-.+.- +.+
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~----------~~~~i~~-~~l------------------------------- 90 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSA----------TFLNISA-ASL------------------------------- 90 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTC----------EEEEEES-TTT-------------------------------
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCC----------CeEEeeH-HHH-------------------------------
Confidence 5678999999999999999999986521 0111100 000
Q ss_pred HHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHH----------HHHHHHHHHHhhcc---
Q 001055 270 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAH----------VGRQVFDRCIRGEL--- 336 (1171)
Q Consensus 270 ~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~----------~~~~l~~~l~~~~~--- 336 (1171)
.. .. .-+++++.|..++++...+|.++++||+.+-++.. ....+...+.....
T Consensus 91 -----~~---~~------~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 156 (297)
T 3b9p_A 91 -----TS---KY------VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPD 156 (297)
T ss_dssp -----SS---SS------CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----
T ss_pred -----hh---cc------cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCC
Confidence 00 00 12367888888888888999999999998876532 12223322222111
Q ss_pred -CCCEEEEEcCCcchhh-----hcCEEEEE
Q 001055 337 -SGKTRVLVTNQLHFLS-----QVDRIILV 360 (1171)
Q Consensus 337 -~~~tvi~vtH~~~~l~-----~~d~i~~l 360 (1171)
.+..+|.+|++++.++ ++++++.+
T Consensus 157 ~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~ 186 (297)
T 3b9p_A 157 GDRIVVLAATNRPQELDEAALRRFTKRVYV 186 (297)
T ss_dssp --CEEEEEEESCGGGBCHHHHHHCCEEEEC
T ss_pred CCcEEEEeecCChhhCCHHHHhhCCeEEEe
Confidence 1234667888776543 34555544
No 380
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.08 E-value=0.0027 Score=70.76 Aligned_cols=70 Identities=10% Similarity=0.053 Sum_probs=43.9
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEecCCcCCCH----------HHHHHHHHHHHHHc-----CCcEEEEEecChhhh----
Q 001055 925 SVGQRQLLSLSRALLRRSKILVLDEATAAVDV----------RTDALIQKTIREEF-----KSCTMLIIAHRLNTI---- 985 (1171)
Q Consensus 925 SgGqkqrl~lArall~~p~iLlLDEpTs~LD~----------~t~~~i~~~l~~~~-----~~~tvi~vtH~~~~~---- 985 (1171)
+++++.|..++++...+|.+|++||+.+-++. .....+...+.... .+..+|.+|++.+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 35677777788888889999999999876543 22223444444422 124577788876543
Q ss_pred -hhcCEEEEE
Q 001055 986 -IDCDRILLL 994 (1171)
Q Consensus 986 -~~~d~i~vl 994 (1171)
.++++++.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 246765544
No 381
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.07 E-value=0.0019 Score=69.51 Aligned_cols=29 Identities=34% Similarity=0.567 Sum_probs=24.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCce
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIVELERGR 844 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~~p~~G~ 844 (1171)
+|+|+|++|+|||||++.|+|...+.+|.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 68999999999999999999987766553
No 382
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.07 E-value=0.00048 Score=81.60 Aligned_cols=45 Identities=20% Similarity=0.264 Sum_probs=33.5
Q ss_pred cCCCEEEEeCcCCCCCH-HHHHHHHHHHHhhccCCCEEEEEcCCcc
Q 001055 305 SNSDVFIFDDPLSALDA-HVGRQVFDRCIRGELSGKTRVLVTNQLH 349 (1171)
Q Consensus 305 ~~~~vllLDEpts~LD~-~~~~~l~~~l~~~~~~~~tvi~vtH~~~ 349 (1171)
.++++|++||+..-.+. .+.+.++..+......|+.+|++||+..
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~ 238 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREP 238 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCG
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCH
Confidence 38999999999887764 5666677655444556788999998743
No 383
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.06 E-value=0.00016 Score=82.99 Aligned_cols=43 Identities=23% Similarity=0.415 Sum_probs=36.9
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCC
Q 001055 812 PPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAK 854 (1171)
Q Consensus 812 ~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~ 854 (1171)
+++.+++|+|++|||||||++.|.|.+.|.+|+|.+.+.|...
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 3477999999999999999999999999999999888776543
No 384
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.06 E-value=0.00028 Score=83.68 Aligned_cols=55 Identities=29% Similarity=0.461 Sum_probs=35.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC------------CCCceEEECCEecCCCChHHHhhheEEEcCC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIVE------------LERGRILIDGFDIAKFGLMDLRKILGIIPQS 870 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~~------------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~ 870 (1171)
+++|+|++|+|||||++.|+|... |.+|.+.++|.++.-++....++..++.+|.
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~ 248 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRT 248 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC----------
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhh
Confidence 799999999999999999999853 6789999999866444433334444444443
No 385
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.04 E-value=0.00014 Score=74.82 Aligned_cols=40 Identities=28% Similarity=0.325 Sum_probs=32.9
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc--eEEECCEec
Q 001055 812 PPSDKVGIVGRTGAGKSSMLNTLFRIVELERG--RILIDGFDI 852 (1171)
Q Consensus 812 ~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G--~I~i~g~~i 852 (1171)
++|++++|+|++||||||+.++|.+.+.| .| .|.++|..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 47999999999999999999999998876 56 666665433
No 386
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.04 E-value=0.00011 Score=80.34 Aligned_cols=49 Identities=29% Similarity=0.373 Sum_probs=40.1
Q ss_pred EEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001055 163 ISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 163 i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
.+++++.+.|. ...+++++++++++| ++|+||||||||||+++|+|...
T Consensus 26 ~~l~~l~~~~~---~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 26 EELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp HHHHHHHHHHH---CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC
Confidence 34556666664 235899999999999 99999999999999999999864
No 387
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.04 E-value=0.0015 Score=74.09 Aligned_cols=136 Identities=15% Similarity=0.180 Sum_probs=75.4
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHhcCC-CCC-CCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHH
Q 001055 187 DIPVGSLVAIVGGTGEGKTSLISAMLGEL-PPV-SDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDV 264 (1171)
Q Consensus 187 ~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~-~~~-~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~ 264 (1171)
.+++|+++.|.|++|||||||+..++... .|. .|+ ..+.+.|+.=+..+ +.+++.+.++.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg---~~~~vlyi~~e~~~---------------~~~~l~~~~~~ 164 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGG---LSGKAVYIDTEGTF---------------RWERIENMAKA 164 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTC---CSCEEEEEESSSCC---------------CHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCC---CCCeEEEEECCCCC---------------CHHHHHHHHHH
Confidence 68999999999999999999999888753 221 111 12356676555322 12222222222
Q ss_pred cCchH--HHhcCCCCCccccCCCCCccChH-HHHHHHHHHHhc---cCCCEEEEeCcCCCCCHH--------H----HHH
Q 001055 265 TSLQH--DLDLLPGGDVTEIGERGVNISGG-QKQRVSMARAVY---SNSDVFIFDDPLSALDAH--------V----GRQ 326 (1171)
Q Consensus 265 ~~l~~--~~~~~~~~~~~~i~~~g~~LSGG-qrqRv~LAraL~---~~~~vllLDEpts~LD~~--------~----~~~ 326 (1171)
.+... .++.+ .+. ...++. +.+.+..++.++ .+++++++|+.++..+.. . ...
T Consensus 165 ~g~~~~~~~~~l------~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~ 235 (324)
T 2z43_A 165 LGLDIDNVMNNI------YYI---RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNK 235 (324)
T ss_dssp TTCCHHHHHHTE------EEE---ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHH
T ss_pred hCCCHHHHhccE------EEE---eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHH
Confidence 22211 11110 000 012333 345677777777 579999999999876431 1 123
Q ss_pred HHHHHHhhc-cCCCEEEEEcCCcc
Q 001055 327 VFDRCIRGE-LSGKTRVLVTNQLH 349 (1171)
Q Consensus 327 l~~~l~~~~-~~~~tvi~vtH~~~ 349 (1171)
+...+.+.. ..+.++|++.|-..
T Consensus 236 ~l~~L~~la~~~~~~Vi~~nq~~~ 259 (324)
T 2z43_A 236 HLHQLTRLAEVYDIAVIITNQVMA 259 (324)
T ss_dssp HHHHHHHHHHHHTCEEEEEEEC--
T ss_pred HHHHHHHHHHHhCCEEEEEcceee
Confidence 333343332 23788888887543
No 388
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.03 E-value=0.00013 Score=92.95 Aligned_cols=32 Identities=16% Similarity=0.303 Sum_probs=28.5
Q ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 001055 809 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVEL 840 (1171)
Q Consensus 809 ~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p 840 (1171)
|.+++|+.+.|+||+|+|||||+++|++.+.+
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 35788999999999999999999999998753
No 389
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.03 E-value=0.0008 Score=75.20 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=41.8
Q ss_pred ee-eeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecC
Q 001055 805 HG-LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIA 853 (1171)
Q Consensus 805 ~~-vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~ 853 (1171)
++ ++++.+ |++++++|++|+||||++..|++.+.+..|+|.+.+.|..
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 45 677766 9999999999999999999999999998899998876654
No 390
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.02 E-value=0.0022 Score=69.05 Aligned_cols=28 Identities=32% Similarity=0.436 Sum_probs=23.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCCCCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGELPPVSD 220 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~~~~~g 220 (1171)
.++|+|++|+|||||++.|+|...+.++
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 5899999999999999999998765543
No 391
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.00 E-value=0.00024 Score=72.31 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=24.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001055 190 VGSLVAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 190 ~Ge~v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
.|++++|+|+|||||||++++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 478899999999999999999999864
No 392
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.95 E-value=0.00024 Score=76.42 Aligned_cols=31 Identities=23% Similarity=0.170 Sum_probs=27.6
Q ss_pred eeEEecCCCEEEEEcCCCccHHHHHHHHhcC
Q 001055 184 INLDIPVGSLVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 184 isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
-+.+.++|++++|+|+||||||||+++|+|.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 3445679999999999999999999999997
No 393
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.94 E-value=0.0018 Score=75.85 Aligned_cols=107 Identities=14% Similarity=0.126 Sum_probs=61.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHHHHHHHcCchH
Q 001055 190 VGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYEKAIDVTSLQH 269 (1171)
Q Consensus 190 ~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~~~~~~~~l~~ 269 (1171)
++.+++++|++||||||++..|++.+.+.. .++.++.-++. .....+.+ ....+..++
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G-------~kVllv~~D~~--r~~a~eqL-----------~~~~~~~gv-- 153 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRG-------YKVGLVAADVY--RPAAYDQL-----------LQLGNQIGV-- 153 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTT-------CCEEEEEECCS--CHHHHHHH-----------HHHHHTTTC--
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC-------CeEEEEecCcc--chhHHHHH-----------HHHHHhcCC--
Confidence 467999999999999999999999886542 23555554431 11111111 111111110
Q ss_pred HHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcC-CC--CCHHHHHHHHH
Q 001055 270 DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPL-SA--LDAHVGRQVFD 329 (1171)
Q Consensus 270 ~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpt-s~--LD~~~~~~l~~ 329 (1171)
| ... .......-.-.+-+++++...++|++|+|+|- .+ .|+.....+..
T Consensus 154 -----~-----~~~-~~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~ 205 (433)
T 3kl4_A 154 -----Q-----VYG-EPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKE 205 (433)
T ss_dssp -----C-----EEC-CTTCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHH
T ss_pred -----c-----eee-ccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHH
Confidence 0 000 00111222223446777777899999999997 56 78876666654
No 394
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.93 E-value=0.00034 Score=71.22 Aligned_cols=32 Identities=28% Similarity=0.421 Sum_probs=27.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEEC
Q 001055 813 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 848 (1171)
Q Consensus 813 ~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~ 848 (1171)
.|++++|+|++||||||++++|++.+.+ +.++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id 34 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYD 34 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEe
Confidence 4789999999999999999999998754 5555
No 395
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.91 E-value=0.00031 Score=75.54 Aligned_cols=44 Identities=16% Similarity=0.295 Sum_probs=32.2
Q ss_pred ceeeeEEEc---CCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEEC
Q 001055 804 LHGLSFTIP---PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 848 (1171)
Q Consensus 804 l~~vs~~i~---~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~ 848 (1171)
|.++|+++. +|..+.|.|++||||||+++.|...+.+ .+.+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 555566555 8999999999999999999999999987 6666543
No 396
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.91 E-value=0.00037 Score=71.19 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=24.8
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 189 PVGSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 189 ~~Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
.+|++++|+|+|||||||+++.|++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 568999999999999999999999864
No 397
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.90 E-value=0.00046 Score=68.91 Aligned_cols=31 Identities=32% Similarity=0.567 Sum_probs=25.1
Q ss_pred eeeeEEecCCCEEEEEcCCCccHHHHHHHHhc
Q 001055 182 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLG 213 (1171)
Q Consensus 182 ~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G 213 (1171)
++.++++.+| +.+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 4455666655 899999999999999999863
No 398
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.88 E-value=0.00022 Score=74.56 Aligned_cols=42 Identities=26% Similarity=0.278 Sum_probs=31.2
Q ss_pred EEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhc
Q 001055 793 VLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 793 s~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g 836 (1171)
+++|++- .++++++|+..+++ +++++|++|+|||||++.+.+
T Consensus 6 ~~~~~~~-~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSGF-SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp --------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHH-HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 3456543 36899999988877 689999999999999999986
No 399
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.88 E-value=0.0013 Score=83.76 Aligned_cols=33 Identities=27% Similarity=0.462 Sum_probs=29.8
Q ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 001055 807 LSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 807 vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
.++.+.+|+.+.|+||+|+|||||+++|++.+.
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 466788999999999999999999999999874
No 400
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.86 E-value=0.00022 Score=86.35 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=31.7
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCC
Q 001055 187 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 220 (1171)
Q Consensus 187 ~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g 220 (1171)
.+++|++++|+|+||||||||+++|+|.+.|++|
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G 398 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGG 398 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCC
Confidence 5789999999999999999999999999988765
No 401
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.84 E-value=0.007 Score=69.27 Aligned_cols=37 Identities=19% Similarity=0.204 Sum_probs=28.8
Q ss_pred cceeee--EEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 001055 803 VLHGLS--FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 803 ~l~~vs--~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
.|+.+- =-+++|+++.|.|++|+|||||...++....
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 455542 1388999999999999999999987775443
No 402
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.82 E-value=0.0014 Score=74.09 Aligned_cols=28 Identities=32% Similarity=0.377 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCCC
Q 001055 190 VGSLVAIVGGTGEGKTSLISAMLGELPP 217 (1171)
Q Consensus 190 ~Ge~v~lvG~nGsGKSTLl~~l~G~~~~ 217 (1171)
.+..+.|.||+|+|||||++.+++.+.+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3467899999999999999999987643
No 403
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.79 E-value=0.0038 Score=67.97 Aligned_cols=42 Identities=26% Similarity=0.397 Sum_probs=27.6
Q ss_pred ceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 001055 804 LHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 849 (1171)
Q Consensus 804 l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g 849 (1171)
++++++.+++| +.|+||+|+|||||+++|++.+... -+.+++
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~ 78 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISG 78 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECS
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeH
Confidence 44444444555 8999999999999999999876421 355544
No 404
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.78 E-value=0.00023 Score=75.35 Aligned_cols=42 Identities=19% Similarity=0.205 Sum_probs=37.1
Q ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc--eEEECCE
Q 001055 809 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERG--RILIDGF 850 (1171)
Q Consensus 809 ~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G--~I~i~g~ 850 (1171)
+.+++|..+.|+|++||||||+.+.|.+.+.|..| .+.++|.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 44678999999999999999999999999988888 8888753
No 405
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.76 E-value=0.00075 Score=67.35 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=25.2
Q ss_pred eeeeEEEcCCCEEEEECCCCCcHHHHHHHHhc
Q 001055 805 HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 805 ~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g 836 (1171)
++.++++.+| ..+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 4455666655 899999999999999999873
No 406
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.75 E-value=0.00049 Score=74.16 Aligned_cols=130 Identities=17% Similarity=0.130 Sum_probs=68.4
Q ss_pred ecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCC-cccHHHHHhcCCCCCHHHHHHHHHHcC
Q 001055 188 IPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIF-NATVRDNILFGSAFEPARYEKAIDVTS 266 (1171)
Q Consensus 188 i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~-~~Tv~eni~~g~~~~~~~~~~~~~~~~ 266 (1171)
+.+|+.++++||+||||||++.+++.......+. ...++++.+.|... ..++.+++........ -..++
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~------~~~~g 142 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----AAECNIVVTQPRRISAVSVAERVAFERGEEP------GKSCG 142 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----GGGCEEEEEESSHHHHHHHHHHHHHTTTCCT------TSSEE
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----CCceEEEEeccchHHHHHHHHHHHHHhcccc------CceEE
Confidence 4578999999999999999888765432111111 12356777777653 4566777642111000 00000
Q ss_pred chHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCC-CCCHHHHHHHHHHHHh
Q 001055 267 LQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLS-ALDAHVGRQVFDRCIR 333 (1171)
Q Consensus 267 l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts-~LD~~~~~~l~~~l~~ 333 (1171)
.....+...... +....--+.|.-.+.. +..+.+.+++++||+-. ++|........+.+..
T Consensus 143 ~~~~~~~~~~~~----~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~ 204 (235)
T 3llm_A 143 YSVRFESILPRP----HASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQ 204 (235)
T ss_dssp EEETTEEECCCS----SSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHH
T ss_pred EeechhhccCCC----CCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHh
Confidence 000000000000 0001123456665553 33688999999999976 5777655444444443
No 407
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.74 E-value=0.00082 Score=69.62 Aligned_cols=34 Identities=29% Similarity=0.363 Sum_probs=20.8
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhc
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g 836 (1171)
.+++++++..++. +++++|++|+|||||++.+.+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 3788999988777 789999999999999999987
No 408
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.72 E-value=0.001 Score=71.62 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=22.0
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhc
Q 001055 811 IPPSDKVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 811 i~~Ge~v~ivG~nGsGKSTLl~~l~g 836 (1171)
+..|+.+.++|||||||||++.++..
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 35689999999999999998877653
No 409
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.68 E-value=0.0045 Score=69.88 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=24.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCC
Q 001055 813 PSDKVGIVGRTGAGKSSMLNTLFRIVELE 841 (1171)
Q Consensus 813 ~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~ 841 (1171)
++..+.|.||+|+|||||++.+.+.+.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 34678999999999999999999877543
No 410
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.66 E-value=0.001 Score=67.70 Aligned_cols=27 Identities=48% Similarity=0.496 Sum_probs=23.5
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Q 001055 812 PPSDKVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 812 ~~Ge~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
++|.+++|+|++|+|||||++.|.|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
No 411
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.60 E-value=0.00081 Score=72.21 Aligned_cols=32 Identities=34% Similarity=0.389 Sum_probs=26.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHh---cCCCCCCceE
Q 001055 814 SDKVGIVGRTGAGKSSMLNTLF---RIVELERGRI 845 (1171)
Q Consensus 814 Ge~v~ivG~nGsGKSTLl~~l~---g~~~p~~G~I 845 (1171)
.-+++|.||+||||||+.+.|. |+...+.|.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~ 43 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM 43 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence 4589999999999999999998 5555556665
No 412
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.59 E-value=0.0057 Score=68.41 Aligned_cols=38 Identities=26% Similarity=0.392 Sum_probs=30.3
Q ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEEC
Q 001055 809 FTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 848 (1171)
Q Consensus 809 ~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~ 848 (1171)
+.++++..+.|.||+|+|||||+++|++... .+-+.++
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~ 81 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIK 81 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEEC
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEE
Confidence 3467899999999999999999999998763 3444443
No 413
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.59 E-value=0.00028 Score=80.67 Aligned_cols=52 Identities=19% Similarity=0.061 Sum_probs=43.1
Q ss_pred CceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCC
Q 001055 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSW 237 (1171)
Q Consensus 179 ~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~ 237 (1171)
.+++++++.+.+|.+++|+|++|+|||||++.|+|.+.+..+ .++++..+|.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~-------~v~v~~~d~~ 95 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGL-------KVAVIAVDPS 95 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTC-------CEEEEEECCC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCC-------eEEEEeecCC
Confidence 578899999999999999999999999999999998866532 3566666553
No 414
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.57 E-value=0.00048 Score=72.49 Aligned_cols=30 Identities=13% Similarity=0.365 Sum_probs=26.4
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
...+|..++|+||+||||||+.+.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 457899999999999999999999998763
No 415
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.57 E-value=0.0019 Score=67.47 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=23.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC
Q 001055 815 DKVGIVGRTGAGKSSMLNTLFRIVELE 841 (1171)
Q Consensus 815 e~v~ivG~nGsGKSTLl~~l~g~~~p~ 841 (1171)
..+.|.||+|+|||||++.+.......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 678999999999999999999876543
No 416
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.56 E-value=0.0009 Score=71.87 Aligned_cols=38 Identities=26% Similarity=0.400 Sum_probs=28.1
Q ss_pred ceeeeeEEec---CCCEEEEEcCCCccHHHHHHHHhcCCCC
Q 001055 180 TLLNINLDIP---VGSLVAIVGGTGEGKTSLISAMLGELPP 217 (1171)
Q Consensus 180 ~l~~isl~i~---~Ge~v~lvG~nGsGKSTLl~~l~G~~~~ 217 (1171)
-|.++|+.+. +|.+++|.|++||||||+++.|...+++
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4666777776 8999999999999999999999998876
No 417
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.56 E-value=0.0052 Score=68.75 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=27.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCCceE
Q 001055 814 SDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 845 (1171)
Q Consensus 814 Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I 845 (1171)
...+.|+||+|+||||+++.|.+.+.+.+|.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 45789999999999999999999987766644
No 418
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.51 E-value=0.00062 Score=77.76 Aligned_cols=44 Identities=18% Similarity=0.332 Sum_probs=34.6
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhh
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI 985 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~ 985 (1171)
+++|+++|| ...+++.....+.+.+.+......+|+++++...+
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l 176 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTRI 176 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhC
Confidence 567999999 67889999999999988765556677788776543
No 419
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.47 E-value=0.0058 Score=67.49 Aligned_cols=28 Identities=32% Similarity=0.341 Sum_probs=24.6
Q ss_pred ecCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 188 IPVGSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 188 i~~Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+.++.-+.|.||+|+|||||++.++..+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4566779999999999999999999875
No 420
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.39 E-value=0.014 Score=68.40 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=28.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEE
Q 001055 813 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILI 847 (1171)
Q Consensus 813 ~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i 847 (1171)
++.+++++|++|+||||++.-|+..+....-+|.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 46789999999999999999999887755445544
No 421
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.36 E-value=0.0016 Score=75.26 Aligned_cols=41 Identities=29% Similarity=0.434 Sum_probs=34.1
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCCceEEECCE
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFRI-----------VELERGRILIDGF 850 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g~-----------~~p~~G~I~i~g~ 850 (1171)
.+..|.+++|||++|+|||||++.|+|. ..|..|.|.+.|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567889999999999999999999998 6788898887653
No 422
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.33 E-value=0.00043 Score=79.74 Aligned_cols=58 Identities=28% Similarity=0.438 Sum_probs=37.1
Q ss_pred CccEEEEeeEEEeCCCCCCcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 001055 784 SGSIKFEDVVLRYRPELPPVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 849 (1171)
Q Consensus 784 ~g~i~~~~vs~~y~~~~~~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g 849 (1171)
.+.+.++|++..|+.. .++++++|+| +|+|++|+|||||++.|++...+..|.+..++
T Consensus 15 ~~~v~~~~l~~~~~~k--~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 15 PGYVGFANLPNQVHRK--SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp ------CCHHHHHHTH--HHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred CceEEeccchHHhCCe--eecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 3568899999888654 5889999976 99999999999999999987666666554433
No 423
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.32 E-value=0.0029 Score=67.52 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=24.3
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001055 190 VGSLVAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 190 ~Ge~v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
++..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 678999999999999999999987654
No 424
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.31 E-value=0.0058 Score=68.34 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=24.4
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCCCCCC
Q 001055 192 SLVAIVGGTGEGKTSLISAMLGELPPVS 219 (1171)
Q Consensus 192 e~v~lvG~nGsGKSTLl~~l~G~~~~~~ 219 (1171)
..+.|+||+|+||||++++|++.+.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~ 75 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTE 75 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCC
Confidence 4788999999999999999999876543
No 425
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.30 E-value=0.0018 Score=66.91 Aligned_cols=32 Identities=31% Similarity=0.482 Sum_probs=26.6
Q ss_pred eeeEEecCCCEEEEEcCCCccHHHHHHHHhcC
Q 001055 183 NINLDIPVGSLVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 183 ~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
++|+..++|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999875
No 426
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.25 E-value=0.0021 Score=67.55 Aligned_cols=31 Identities=29% Similarity=0.501 Sum_probs=24.7
Q ss_pred eeeeEEecCCCEEEEEcCCCccHHHHHHHHhc
Q 001055 182 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLG 213 (1171)
Q Consensus 182 ~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G 213 (1171)
.+.++++.+ .+.+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~-~~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 15 SDTVVEFKE-GINLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SSEEEECCS-EEEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEeCC-CeEEEEcCCCCCHHHHHHHHHH
Confidence 345566665 4999999999999999998853
No 427
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.22 E-value=0.0018 Score=66.85 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=32.1
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEE
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRIL 846 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~ 846 (1171)
...+|..+.|+|++||||||+.+.|.+.+.+..|.+.
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~ 45 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVE 45 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 3457999999999999999999999999887777663
No 428
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.19 E-value=0.0038 Score=62.79 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
+++|+|++|+|||||++.+.|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 699999999999999999998653
No 429
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.19 E-value=0.0021 Score=65.82 Aligned_cols=29 Identities=31% Similarity=0.281 Sum_probs=25.9
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHhcCCCC
Q 001055 189 PVGSLVAIVGGTGEGKTSLISAMLGELPP 217 (1171)
Q Consensus 189 ~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~ 217 (1171)
++|++++|+|++||||||+++.|++.+++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 47899999999999999999999997754
No 430
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.17 E-value=0.0056 Score=64.97 Aligned_cols=45 Identities=18% Similarity=0.261 Sum_probs=34.5
Q ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChhhh
Q 001055 940 RRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI 985 (1171)
Q Consensus 940 ~~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~ 985 (1171)
.+|.+|++||+-. +|......+.+.+.+...+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 4578999999876 78888888888886644467788888876654
No 431
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.15 E-value=0.0037 Score=65.28 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=23.0
Q ss_pred CEEEEEcCCCccHHHHHHHHhcCCCC
Q 001055 192 SLVAIVGGTGEGKTSLISAMLGELPP 217 (1171)
Q Consensus 192 e~v~lvG~nGsGKSTLl~~l~G~~~~ 217 (1171)
..+.|.||+|+|||||+++++.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 67899999999999999999987643
No 432
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.14 E-value=0.0014 Score=74.96 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=32.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCC
Q 001055 190 VGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSW 237 (1171)
Q Consensus 190 ~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~ 237 (1171)
++.+++|+|++|||||||++.|+|.+.+..+ +|+++..+|.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~-------~v~V~~~dp~ 113 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGH-------KLSVLAVDPS 113 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTC-------CEEEEECCC-
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCC-------eEEEEeecCC
Confidence 4678999999999999999999998766543 4667766664
No 433
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.13 E-value=0.012 Score=64.77 Aligned_cols=28 Identities=21% Similarity=0.395 Sum_probs=24.5
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Q 001055 811 IPPSDKVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 811 i~~Ge~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
+.++..+.|.||+|+|||||++.+++.+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4567779999999999999999998865
No 434
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.13 E-value=0.0031 Score=64.67 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRI 837 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~ 837 (1171)
+++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999984
No 435
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.12 E-value=0.0024 Score=65.85 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=26.5
Q ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Q 001055 806 GLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRI 837 (1171)
Q Consensus 806 ~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~ 837 (1171)
++|+..++|.+++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888889999999999999999999999875
No 436
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.08 E-value=0.00093 Score=81.23 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=34.5
Q ss_pred CceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCC
Q 001055 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV 218 (1171)
Q Consensus 179 ~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~ 218 (1171)
.+++++++++ +|+.++|+||||||||||+++|++.+.+.
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~ 135 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK 135 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 4677788888 89999999999999999999999998664
No 437
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.07 E-value=0.01 Score=70.26 Aligned_cols=129 Identities=13% Similarity=0.081 Sum_probs=75.3
Q ss_pred CceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHH
Q 001055 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARY 258 (1171)
Q Consensus 179 ~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~ 258 (1171)
+.|+.+.-.+++|+++.|.|++|+|||||+.-++.......| ..+.|++=+ ...+.+
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g------~~vl~~slE-----------------~~~~~l 244 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG------VGVGIYSLE-----------------MPAAQL 244 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC------CCEEEEESS-----------------SCHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC------CeEEEEECC-----------------CCHHHH
Confidence 356776667999999999999999999999888765432111 134444332 122222
Q ss_pred H-HHHH-HcCchHHHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhcc
Q 001055 259 E-KAID-VTSLQHDLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGEL 336 (1171)
Q Consensus 259 ~-~~~~-~~~l~~~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~ 336 (1171)
. +.+. ..++ +. ..+. ...|+..+.+|+.-|...+.+.++++.|+|.. +..........+.+.
T Consensus 245 ~~R~~~~~~~i-------~~---~~l~--~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~--s~~~l~~~~~~l~~~-- 308 (444)
T 2q6t_A 245 TLRMMCSEARI-------DM---NRVR--LGQLTDRDFSRLVDVASRLSEAPIYIDDTPDL--TLMEVRARARRLVSQ-- 308 (444)
T ss_dssp HHHHHHHHTTC-------CT---TTCC--GGGCCHHHHHHHHHHHHHHHTSCEEEECCTTC--BHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHcCC-------CH---HHHh--CCCCCHHHHHHHHHHHHHHhcCCEEEECCCCC--CHHHHHHHHHHHHHH--
Confidence 1 1111 1111 10 0111 13699999999998888888888999887744 333333222223221
Q ss_pred CCCEEEEEcC
Q 001055 337 SGKTRVLVTN 346 (1171)
Q Consensus 337 ~~~tvi~vtH 346 (1171)
.+..+|+|-+
T Consensus 309 ~~~~lIvID~ 318 (444)
T 2q6t_A 309 NQVGLIIIDY 318 (444)
T ss_dssp SCCCEEEEEC
T ss_pred cCCCEEEEcC
Confidence 2455666543
No 438
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.07 E-value=0.0047 Score=65.89 Aligned_cols=28 Identities=7% Similarity=0.170 Sum_probs=24.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 001055 813 PSDKVGIVGRTGAGKSSMLNTLFRIVEL 840 (1171)
Q Consensus 813 ~Ge~v~ivG~nGsGKSTLl~~l~g~~~p 840 (1171)
++..+.|.||+|+|||||++.+...+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999876653
No 439
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.04 E-value=0.0022 Score=67.30 Aligned_cols=30 Identities=30% Similarity=0.535 Sum_probs=26.3
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001055 187 DIPVGSLVAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 187 ~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
...+|.+++|+||+||||||+.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356899999999999999999999998764
No 440
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.03 E-value=0.0032 Score=64.02 Aligned_cols=27 Identities=37% Similarity=0.551 Sum_probs=23.6
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 189 PVGSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 189 ~~Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
++|.+++|+|++|+|||||++.|.|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999999975
No 441
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.98 E-value=0.0038 Score=65.65 Aligned_cols=30 Identities=27% Similarity=0.459 Sum_probs=24.4
Q ss_pred eeeeEEEcCCCEEEEECCCCCcHHHHHHHHh
Q 001055 805 HGLSFTIPPSDKVGIVGRTGAGKSSMLNTLF 835 (1171)
Q Consensus 805 ~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~ 835 (1171)
.+.++.+.+| ..+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 3455666654 89999999999999999886
No 442
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.93 E-value=0.0032 Score=64.42 Aligned_cols=38 Identities=21% Similarity=0.305 Sum_probs=30.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCC---CceEEECCEe
Q 001055 814 SDKVGIVGRTGAGKSSMLNTLFRIVELE---RGRILIDGFD 851 (1171)
Q Consensus 814 Ge~v~ivG~nGsGKSTLl~~l~g~~~p~---~G~I~i~g~~ 851 (1171)
-..++|+|++|||||||++.|.+.+.+. -|.|..++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 3589999999999999999999886554 3677776543
No 443
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.91 E-value=0.0043 Score=64.13 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=21.2
Q ss_pred CceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcC
Q 001055 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 179 ~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
.+++++++..++. .++++|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 3788999988877 7899999999999999999974
No 444
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.91 E-value=0.0075 Score=71.64 Aligned_cols=57 Identities=9% Similarity=0.154 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHhccCCCEEEEecCCc-CCCHHHHHHHHHHHHHHcCCcEEEEEecChhhh
Q 001055 926 VGQRQLLSLSRALLRRSKILVLDEATA-AVDVRTDALIQKTIREEFKSCTMLIIAHRLNTI 985 (1171)
Q Consensus 926 gGqkqrl~lArall~~p~iLlLDEpTs-~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~~~ 985 (1171)
+.|.+....+...+++++++|+..... ++... ...+.+.+++ .++.+|+|.+..+..
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~-d~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAA-DEEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH-HHHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH-HHHHHHHHHH--cCCCEEEEEECccch
Confidence 347777788888889999877665444 45444 4556666665 577888888876654
No 445
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.89 E-value=0.0097 Score=64.48 Aligned_cols=23 Identities=43% Similarity=0.614 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
+|+|+|++|+|||||++.|+|.-
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68999999999999999999864
No 446
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.87 E-value=0.0063 Score=72.29 Aligned_cols=55 Identities=25% Similarity=0.175 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCcCC-CCCHHHHHHHHHHHHhhccCCCEEEEEcCCcc
Q 001055 291 GGQKQRVSMARAVYSNSDVFIFDDPLS-ALDAHVGRQVFDRCIRGELSGKTRVLVTNQLH 349 (1171)
Q Consensus 291 GGqrqRv~LAraL~~~~~vllLDEpts-~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~ 349 (1171)
+.|++-..++...+.++|++|+..... ++.+. ..++.+.+.+ .++.+|+|.+..+
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~-d~~l~~~l~~---~~~pvilV~NK~D 142 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAA-DEEVAKILYR---TKKPVVLAVNKLD 142 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH-HHHHHHHHTT---CCSCEEEEEECC-
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH-HHHHHHHHHH---cCCCEEEEEECcc
Confidence 348888888999999999877765544 45444 4566665432 4577777775543
No 447
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.86 E-value=0.0033 Score=65.74 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHhc
Q 001055 193 LVAIVGGTGEGKTSLISAMLG 213 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G 213 (1171)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 448
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.85 E-value=0.0012 Score=69.02 Aligned_cols=43 Identities=19% Similarity=0.283 Sum_probs=31.9
Q ss_pred EEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcC
Q 001055 169 YFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 169 s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
+++|++ -+++++++|+..+++ .++++|++|+|||||++.+.+.
T Consensus 6 ~~~~~~--~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 6 DWIYSG--FSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHH--HHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 345653 346899999998887 5789999999999999999874
No 449
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.81 E-value=0.0064 Score=69.58 Aligned_cols=36 Identities=31% Similarity=0.476 Sum_probs=29.3
Q ss_pred CceeeeeE---EecCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 179 PTLLNINL---DIPVGSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 179 ~~l~~isl---~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+.|+.+ + .+++|+++.|.|++|+|||||...++...
T Consensus 49 ~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 49 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345554 3 48999999999999999999998887654
No 450
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.80 E-value=0.022 Score=61.63 Aligned_cols=60 Identities=8% Similarity=0.056 Sum_probs=35.8
Q ss_pred ChHHHHHHHHHHHhc---cCCCEEEEeCcCCCCCHHHHHHHHHHHHhh---ccCCCEEEEEcCCcch
Q 001055 290 SGGQKQRVSMARAVY---SNSDVFIFDDPLSALDAHVGRQVFDRCIRG---ELSGKTRVLVTNQLHF 350 (1171)
Q Consensus 290 SGGqrqRv~LAraL~---~~~~vllLDEpts~LD~~~~~~l~~~l~~~---~~~~~tvi~vtH~~~~ 350 (1171)
+.|++.+-.+.++++ .+++++|+--+.+.++... .++++.+... ...+.++|+++|..+.
T Consensus 86 ~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~-~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 86 SKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQD-QQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp HHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHH-HHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred CcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHH-HHHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 344556666777774 7888777665555665543 3444444432 1125789999986543
No 451
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.79 E-value=0.0026 Score=66.55 Aligned_cols=32 Identities=28% Similarity=0.515 Sum_probs=26.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECC
Q 001055 814 SDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDG 849 (1171)
Q Consensus 814 Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g 849 (1171)
..+++|+|++||||||+.+.|.+.+ |.+.+++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeC
Confidence 5689999999999999999998876 4555654
No 452
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.77 E-value=0.002 Score=76.99 Aligned_cols=36 Identities=39% Similarity=0.587 Sum_probs=33.1
Q ss_pred CceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001055 179 PTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 179 ~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
..++++++.+++| ++|+||||+|||||+++|+|+..
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC
Confidence 5788999999999 99999999999999999999863
No 453
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.75 E-value=0.0015 Score=68.99 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=30.4
Q ss_pred EEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCC
Q 001055 186 LDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 220 (1171)
Q Consensus 186 l~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g 220 (1171)
+.+++|.+++|+|++||||||+.+.|.+.++|..|
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g 54 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRR 54 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccC
Confidence 55788999999999999999999999998865444
No 454
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.73 E-value=0.0045 Score=64.69 Aligned_cols=21 Identities=29% Similarity=0.664 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g 836 (1171)
+++|+|++||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
No 455
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.72 E-value=0.027 Score=63.44 Aligned_cols=27 Identities=15% Similarity=0.299 Sum_probs=24.6
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhc
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g 836 (1171)
-+++|+++.|.||+|+|||||...++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999987774
No 456
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.63 E-value=0.035 Score=54.65 Aligned_cols=28 Identities=18% Similarity=0.173 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 001055 813 PSDKVGIVGRTGAGKSSMLNTLFRIVEL 840 (1171)
Q Consensus 813 ~Ge~v~ivG~nGsGKSTLl~~l~g~~~p 840 (1171)
.+.-+-|.||+|+|||++.+.|......
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 3455889999999999999999877544
No 457
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.63 E-value=0.0029 Score=65.20 Aligned_cols=32 Identities=28% Similarity=0.353 Sum_probs=27.9
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHhcCCCCC
Q 001055 187 DIPVGSLVAIVGGTGEGKTSLISAMLGELPPV 218 (1171)
Q Consensus 187 ~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~ 218 (1171)
...+|.+++|+|++||||||+.+.|++.+.+.
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 34578999999999999999999999887654
No 458
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.58 E-value=0.0031 Score=68.64 Aligned_cols=41 Identities=20% Similarity=0.305 Sum_probs=33.1
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEec
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDI 852 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i 852 (1171)
...++.++.|+|++||||||+.+.|.+.+. .|.+.++|..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 456688999999999999999999998764 35677776443
No 459
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.57 E-value=0.006 Score=62.56 Aligned_cols=26 Identities=38% Similarity=0.694 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC
Q 001055 816 KVGIVGRTGAGKSSMLNTLFRIVELE 841 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g~~~p~ 841 (1171)
+++|+|++|+|||||++.+.+...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 68999999999999999999975443
No 460
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.55 E-value=0.0022 Score=72.61 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=34.1
Q ss_pred CceeeeeEEecCCCE--EEEEcCCCccHHHHHHHHhcCCC
Q 001055 179 PTLLNINLDIPVGSL--VAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 179 ~~l~~isl~i~~Ge~--v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 367888899999999 99999999999999999998763
No 461
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.53 E-value=0.063 Score=61.51 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=24.5
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcC
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFRI 837 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g~ 837 (1171)
-+++|+.+.|.||+|+|||||...++..
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 4789999999999999999999776643
No 462
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.50 E-value=0.03 Score=66.22 Aligned_cols=107 Identities=20% Similarity=0.146 Sum_probs=63.8
Q ss_pred CcceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEECCEecCCCChHHHhhheEEEcCCcccccccHHhh
Q 001055 802 PVLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILIDGFDIAKFGLMDLRKILGIIPQSPVLFSGTVRFN 881 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~~n 881 (1171)
+.|+.+.--+++|+.+.|.|++|+|||||+.-++.......|. .+.|++=
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~------------------~vl~~sl------------ 237 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGV------------------GVGIYSL------------ 237 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCC------------------CEEEEES------------
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCC------------------eEEEEEC------------
Confidence 3577776568999999999999999999998887654322220 1111110
Q ss_pred ccCCCCCCHHHHHHHHHHhcHHHHHHHccCCcchhhhcCCCCCChhHHHHHHHHHHhccCCCEEEEecCCcC
Q 001055 882 LDPFSEHSDADLWEALERAHLKDAIRRNSLGLDAQVSEAGENFSVGQRQLLSLSRALLRRSKILVLDEATAA 953 (1171)
Q Consensus 882 l~~~~~~~~~~i~~~l~~~~~~~~i~~lp~gl~~~~~~~~~~LSgGqkqrl~lArall~~p~iLlLDEpTs~ 953 (1171)
+.+.+++..-+.. . . .+++..--.. ..|+..+.+|+.-|...+.+.++.+.|+|...
T Consensus 238 -----E~~~~~l~~R~~~-----~--~--~~i~~~~l~~-g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s 294 (444)
T 2q6t_A 238 -----EMPAAQLTLRMMC-----S--E--ARIDMNRVRL-GQLTDRDFSRLVDVASRLSEAPIYIDDTPDLT 294 (444)
T ss_dssp -----SSCHHHHHHHHHH-----H--H--TTCCTTTCCG-GGCCHHHHHHHHHHHHHHHTSCEEEECCTTCB
T ss_pred -----CCCHHHHHHHHHH-----H--H--cCCCHHHHhC-CCCCHHHHHHHHHHHHHHhcCCEEEECCCCCC
Confidence 1122222211110 0 0 1111110011 25899999999988888888889998876443
No 463
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.50 E-value=0.0041 Score=72.72 Aligned_cols=37 Identities=22% Similarity=0.082 Sum_probs=32.5
Q ss_pred eeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCC
Q 001055 182 LNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSD 220 (1171)
Q Consensus 182 ~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g 220 (1171)
++++|+ +|++++++|+|||||||++..|++.+.+..+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~ 127 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGR 127 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 567777 8999999999999999999999999877543
No 464
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.46 E-value=0.0021 Score=72.90 Aligned_cols=38 Identities=34% Similarity=0.491 Sum_probs=34.1
Q ss_pred CcceeeeEEEcCCCE--EEEECCCCCcHHHHHHHHhcCCC
Q 001055 802 PVLHGLSFTIPPSDK--VGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 802 ~~l~~vs~~i~~Ge~--v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 378888999999999 99999999999999999998753
No 465
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.46 E-value=0.0086 Score=60.14 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=21.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
.++|+|++|+|||||++.+.|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999999653
No 466
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.44 E-value=0.019 Score=60.71 Aligned_cols=45 Identities=16% Similarity=0.133 Sum_probs=31.3
Q ss_pred cCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccCCCEEEEEcCCcchh
Q 001055 305 SNSDVFIFDDPLSALDAHVGRQVFDRCIRGELSGKTRVLVTNQLHFL 351 (1171)
Q Consensus 305 ~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~~~tvi~vtH~~~~l 351 (1171)
.++.++++||+-. +|+.....+...+.. ...+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~-~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEE-PPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHS-CCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhc-CCCceEEEEEeCChHhC
Confidence 3578999999866 788877777665432 22356788888876654
No 467
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.43 E-value=0.0066 Score=70.60 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=31.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCceEEEC
Q 001055 813 PSDKVGIVGRTGAGKSSMLNTLFRIVELERGRILID 848 (1171)
Q Consensus 813 ~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I~i~ 848 (1171)
.+..+.|+|+|||||||+++.|++.+.+..+.|.+-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 577899999999999999999998888888888774
No 468
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.33 E-value=0.0079 Score=61.63 Aligned_cols=25 Identities=36% Similarity=0.606 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCCCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGELPP 217 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~~~ 217 (1171)
.++|+|++|+|||||++.+.|...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 5899999999999999999997533
No 469
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.33 E-value=0.0067 Score=63.34 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 191 GSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 191 Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
..+++|+|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 470
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.30 E-value=0.0072 Score=62.01 Aligned_cols=26 Identities=35% Similarity=0.501 Sum_probs=22.8
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHhcC
Q 001055 189 PVGSLVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 189 ~~Ge~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999853
No 471
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.27 E-value=0.012 Score=67.20 Aligned_cols=36 Identities=33% Similarity=0.529 Sum_probs=30.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhc-----------CCCCCCceEEECC
Q 001055 814 SDKVGIVGRTGAGKSSMLNTLFR-----------IVELERGRILIDG 849 (1171)
Q Consensus 814 Ge~v~ivG~nGsGKSTLl~~l~g-----------~~~p~~G~I~i~g 849 (1171)
|-+++|||++|+|||||++.|++ ...|+.|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 56899999999999999999998 4567788887765
No 472
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.27 E-value=0.003 Score=70.52 Aligned_cols=45 Identities=20% Similarity=0.112 Sum_probs=36.0
Q ss_pred eeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCC
Q 001055 184 INLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVS 236 (1171)
Q Consensus 184 isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~ 236 (1171)
++++.+ |++++++|++|+||||++..|++.+.+..+ ++.++..++
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~-------~v~l~~~D~ 136 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGF-------KVGLVGADV 136 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTC-------CEEEEECCC
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCC-------eEEEEecCC
Confidence 677766 999999999999999999999998865432 355665554
No 473
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.20 E-value=0.012 Score=66.14 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=23.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Q 001055 814 SDKVGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 814 Ge~v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
+.-+.|.||+|+|||+|+++|.....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999987654
No 474
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.16 E-value=0.14 Score=56.98 Aligned_cols=26 Identities=15% Similarity=0.387 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Q 001055 814 SDKVGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 814 Ge~v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
+..+.|.||+|+||||+++.++..+.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999998887653
No 475
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.15 E-value=0.0021 Score=74.03 Aligned_cols=48 Identities=17% Similarity=0.193 Sum_probs=35.6
Q ss_pred cEEEEeeEEEcCCCCCCCceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCC
Q 001055 162 AISIRNGYFSWDSKAERPTLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPV 218 (1171)
Q Consensus 162 ~i~~~~~s~~~~~~~~~~~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~ 218 (1171)
.+.++|++..|.. +.++++++|.| +|+|++|+|||||++.|.|...+.
T Consensus 17 ~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~ 64 (361)
T 2qag_A 17 YVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP 64 (361)
T ss_dssp ----CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC--
T ss_pred eEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCC
Confidence 4788888888752 46788888877 999999999999999998875443
No 476
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.13 E-value=0.018 Score=59.08 Aligned_cols=28 Identities=39% Similarity=0.629 Sum_probs=22.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc-C----CCCCCc
Q 001055 816 KVGIVGRTGAGKSSMLNTLFR-I----VELERG 843 (1171)
Q Consensus 816 ~v~ivG~nGsGKSTLl~~l~g-~----~~p~~G 843 (1171)
+++|+|++|+|||||++.+.+ . +.|+.|
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~ 54 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG 54 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence 699999999999999976654 3 456655
No 477
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.11 E-value=0.02 Score=65.76 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=24.8
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCC
Q 001055 812 PPSDKVGIVGRTGAGKSSMLNTLFRIVEL 840 (1171)
Q Consensus 812 ~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p 840 (1171)
..+..+.|.||+|+||||+++.+...+..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45678999999999999999999987643
No 478
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.06 E-value=0.0094 Score=61.11 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=23.3
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Q 001055 812 PPSDKVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 812 ~~Ge~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
.+|.+++|+|++||||||+.+.|...+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998543
No 479
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.05 E-value=0.011 Score=63.60 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=24.5
Q ss_pred ecCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 188 IPVGSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 188 i~~Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
-++|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578899999999999999999998754
No 480
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.04 E-value=0.008 Score=65.36 Aligned_cols=34 Identities=41% Similarity=0.611 Sum_probs=24.3
Q ss_pred eeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001055 181 LLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 181 l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
++++++.+++| +.|+||+|+|||||+++|++...
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 34444455555 88999999999999999998763
No 481
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.03 E-value=0.024 Score=66.95 Aligned_cols=129 Identities=16% Similarity=0.130 Sum_probs=71.4
Q ss_pred ceeeeeEEecCCCEEEEEcCCCccHHHHHHHHhcCCCCCCCccceecCcEEEEecCCCCCcccHHHHHhcCCCCCHHHHH
Q 001055 180 TLLNINLDIPVGSLVAIVGGTGEGKTSLISAMLGELPPVSDASAVIRGTVAYVPQVSWIFNATVRDNILFGSAFEPARYE 259 (1171)
Q Consensus 180 ~l~~isl~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~~~~g~~~~~~~~i~~v~Q~~~l~~~Tv~eni~~g~~~~~~~~~ 259 (1171)
-|+.+.-.+++|+++.|.|++|+|||||+.-++...-.. ...+.|++=+- + ..+-..
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~-------g~~vl~fSlEm-----s-----------~~ql~~ 242 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-------DDVVNLHSLEM-----G-----------KKENIK 242 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT-------TCEEEEECSSS-----C-----------TTHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc-------CCEEEEEECCC-----C-----------HHHHHH
Confidence 455555479999999999999999999988776532110 12455554331 0 111111
Q ss_pred HHHH-HcCchH-HHhcCCCCCccccCCCCCccChHHHHHHHHHHHhccCCCEEEEeCcCCCCCHHHHHHHHHHHHhhccC
Q 001055 260 KAID-VTSLQH-DLDLLPGGDVTEIGERGVNISGGQKQRVSMARAVYSNSDVFIFDDPLSALDAHVGRQVFDRCIRGELS 337 (1171)
Q Consensus 260 ~~~~-~~~l~~-~~~~~~~~~~~~i~~~g~~LSGGqrqRv~LAraL~~~~~vllLDEpts~LD~~~~~~l~~~l~~~~~~ 337 (1171)
+.+. ..+... .+. .| . ..|+..+.+|+.-|...+.+.++++.|+|. +++.........+.+. .
T Consensus 243 R~~~~~~~i~~~~l~---~g------~--~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~~~i~~~ir~l~~~--~ 307 (444)
T 3bgw_A 243 RLIVTAGSINAQKIK---AA------R--RDFASEDWGKLSMAIGEISNSNINIFDKAG--QSVNYIWSKTRQTKRK--N 307 (444)
T ss_dssp HHHHHHSCCCHHHHH---HT------G--GGTCCSCHHHHHHHHHHHHTSCEEEECCSS--CBHHHHHHHHHHHHHH--S
T ss_pred HHHHHHcCCCHHHHh---cc------c--CCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHHHHHHHHHHHHH--h
Confidence 2111 112110 010 00 0 127778888888888777788888888774 5554443333333222 2
Q ss_pred CCE--EEEEcC
Q 001055 338 GKT--RVLVTN 346 (1171)
Q Consensus 338 ~~t--vi~vtH 346 (1171)
+.. +|+|-+
T Consensus 308 ~~~~~lIVID~ 318 (444)
T 3bgw_A 308 PGKRVIVMIDY 318 (444)
T ss_dssp CSSCEEEEEEC
T ss_pred CCCCeEEEEec
Confidence 344 666643
No 482
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.00 E-value=0.012 Score=63.19 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=24.4
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Q 001055 811 IPPSDKVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 811 i~~Ge~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
-++|.+++|+|++||||||+.+.|.+.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3678999999999999999999998743
No 483
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.91 E-value=0.093 Score=60.00 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Q 001055 813 PSDKVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 813 ~Ge~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
+..-+.|.||+|+|||||++.++...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 45678999999999999999998765
No 484
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.87 E-value=0.032 Score=59.28 Aligned_cols=51 Identities=22% Similarity=0.277 Sum_probs=34.3
Q ss_pred CCCEEEEecCCcCCCHHHHHHHHHHHHHHcCCcEEEEEecChh-----------hhhhcCEEEEEe
Q 001055 941 RSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLN-----------TIIDCDRILLLD 995 (1171)
Q Consensus 941 ~p~iLlLDEpTs~LD~~t~~~i~~~l~~~~~~~tvi~vtH~~~-----------~~~~~d~i~vl~ 995 (1171)
+|+++++||.-. ++.+..+.+ ..|.+ .+.+||++-|+.+ .+..||+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l-~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVA-NILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHH-HHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHH-HHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 766543333 33333 4889999999432 223489988764
No 485
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.87 E-value=0.014 Score=59.22 Aligned_cols=27 Identities=22% Similarity=0.602 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001055 190 VGSLVAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 190 ~Ge~v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
.|.++.|+|++||||||+.+.|+..++
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999987653
No 486
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.83 E-value=0.014 Score=59.54 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhcC
Q 001055 815 DKVGIVGRTGAGKSSMLNTLFRI 837 (1171)
Q Consensus 815 e~v~ivG~nGsGKSTLl~~l~g~ 837 (1171)
=+++|+|++|+|||||++.+.+.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999875
No 487
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.80 E-value=0.014 Score=59.71 Aligned_cols=22 Identities=32% Similarity=0.694 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHhcC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
No 488
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.77 E-value=0.0066 Score=66.06 Aligned_cols=29 Identities=21% Similarity=0.247 Sum_probs=25.3
Q ss_pred ecCCCEEEEEcCCCccHHHHHHHHhcCCC
Q 001055 188 IPVGSLVAIVGGTGEGKTSLISAMLGELP 216 (1171)
Q Consensus 188 i~~Ge~v~lvG~nGsGKSTLl~~l~G~~~ 216 (1171)
.+++.++.|+|++||||||+.+.|+..+.
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45667899999999999999999998764
No 489
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.77 E-value=0.052 Score=63.98 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=28.0
Q ss_pred cceeeeEEEcCCCEEEEECCCCCcHHHHHHHHhc
Q 001055 803 VLHGLSFTIPPSDKVGIVGRTGAGKSSMLNTLFR 836 (1171)
Q Consensus 803 ~l~~vs~~i~~Ge~v~ivG~nGsGKSTLl~~l~g 836 (1171)
.|+.+.--+++|+.+.|.|++|+|||||+.-++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 4555554689999999999999999999876664
No 490
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.77 E-value=0.084 Score=51.84 Aligned_cols=28 Identities=14% Similarity=0.058 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCCCC
Q 001055 190 VGSLVAIVGGTGEGKTSLISAMLGELPP 217 (1171)
Q Consensus 190 ~Ge~v~lvG~nGsGKSTLl~~l~G~~~~ 217 (1171)
.+.-+.|.||+|+|||++.+.|......
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 4456889999999999999999876543
No 491
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.74 E-value=0.015 Score=58.62 Aligned_cols=23 Identities=22% Similarity=0.249 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHhcCC
Q 001055 193 LVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 193 ~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999998654
No 492
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.74 E-value=0.083 Score=60.42 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=23.5
Q ss_pred cCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 189 PVGSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 189 ~~Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
.+..-+.|.||+|+|||||+++++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 355679999999999999999998765
No 493
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.69 E-value=0.015 Score=59.43 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=23.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHhcCCCC
Q 001055 191 GSLVAIVGGTGEGKTSLISAMLGELPP 217 (1171)
Q Consensus 191 Ge~v~lvG~nGsGKSTLl~~l~G~~~~ 217 (1171)
-.+++|+|++|||||||++.|++.+++
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 358999999999999999999987653
No 494
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.68 E-value=0.13 Score=55.63 Aligned_cols=27 Identities=15% Similarity=0.242 Sum_probs=22.6
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Q 001055 812 PPSDKVGIVGRTGAGKSSMLNTLFRIV 838 (1171)
Q Consensus 812 ~~Ge~v~ivG~nGsGKSTLl~~l~g~~ 838 (1171)
++..-+.|.||+|+||||+++.++..+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344568899999999999999998754
No 495
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=94.64 E-value=0.012 Score=67.84 Aligned_cols=29 Identities=17% Similarity=0.282 Sum_probs=24.8
Q ss_pred EecCCCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 187 DIPVGSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 187 ~i~~Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
.+..|..++|||+||+|||||++.|+|.-
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~ 46 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQ 46 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC--
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 45678899999999999999999999873
No 496
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.61 E-value=0.12 Score=69.78 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=30.2
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCceE
Q 001055 810 TIPPSDKVGIVGRTGAGKSSMLNTLFRIVELERGRI 845 (1171)
Q Consensus 810 ~i~~Ge~v~ivG~nGsGKSTLl~~l~g~~~p~~G~I 845 (1171)
-+++|+.+.|.||+|+|||||+..++.......|.+
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~V 763 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTC 763 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCe
Confidence 489999999999999999999999887665544444
No 497
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.59 E-value=0.045 Score=61.12 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=25.9
Q ss_pred EEecCCCEEEEEcCCCccHHHHHHHHhcC
Q 001055 186 LDIPVGSLVAIVGGTGEGKTSLISAMLGE 214 (1171)
Q Consensus 186 l~i~~Ge~v~lvG~nGsGKSTLl~~l~G~ 214 (1171)
-.+++|..+.|.||+|+|||||...++..
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 46889999999999999999999998754
No 498
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.57 E-value=0.0058 Score=69.59 Aligned_cols=41 Identities=27% Similarity=0.336 Sum_probs=36.8
Q ss_pred CCceeeeeEEecCCCE--EEEEcCCCccHHHHHHHHhcCCCCC
Q 001055 178 RPTLLNINLDIPVGSL--VAIVGGTGEGKTSLISAMLGELPPV 218 (1171)
Q Consensus 178 ~~~l~~isl~i~~Ge~--v~lvG~nGsGKSTLl~~l~G~~~~~ 218 (1171)
+.+++.++..++.|++ +.+.||+|+||||+++++++.+.+.
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~ 73 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 3588899999999998 9999999999999999999987654
No 499
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.51 E-value=0.02 Score=58.10 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=23.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Q 001055 813 PSDKVGIVGRTGAGKSSMLNTLFRIVE 839 (1171)
Q Consensus 813 ~Ge~v~ivG~nGsGKSTLl~~l~g~~~ 839 (1171)
.|..+.|+|++||||||+.+.|...+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999998664
No 500
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.50 E-value=0.019 Score=58.88 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHhcCC
Q 001055 190 VGSLVAIVGGTGEGKTSLISAMLGEL 215 (1171)
Q Consensus 190 ~Ge~v~lvG~nGsGKSTLl~~l~G~~ 215 (1171)
+|.+++|.|++||||||+.+.|+-.+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999997644
Done!