Query 001056
Match_columns 1171
No_of_seqs 270 out of 826
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 14:36:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001056.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001056hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03069 magnesiumprotoporphyr 100.0 4E-299 8E-304 2790.3 112.3 1116 55-1170 1-1117(1220)
2 PRK12493 magnesium chelatase s 100.0 4E-289 8E-294 2711.5 109.3 1097 63-1170 1-1102(1310)
3 TIGR02025 BchH magnesium chela 100.0 4E-282 9E-287 2624.2 103.1 1003 77-1170 1-1010(1216)
4 PRK13405 bchH magnesium chelat 100.0 3E-277 5E-282 2574.8 98.2 974 55-1170 1-1001(1209)
5 PLN03241 magnesium chelatase s 100.0 2E-248 5E-253 2328.6 94.2 980 66-1170 58-1130(1353)
6 PRK05989 cobN cobaltochelatase 100.0 2E-238 4E-243 2241.6 97.5 975 75-1170 23-1042(1244)
7 PF02514 CobN-Mg_chel: CobN/Ma 100.0 8E-239 2E-243 2229.4 87.7 874 241-1170 2-909 (1098)
8 TIGR02257 cobalto_cobN cobalto 100.0 6E-231 1E-235 2142.4 86.6 866 75-1170 23-921 (1122)
9 PRK12321 cobN cobaltochelatase 100.0 2E-228 4E-233 2117.1 84.4 853 75-1170 23-904 (1100)
10 COG1429 CobN Cobalamin biosynt 100.0 3E-221 7E-226 2091.0 86.6 996 71-1170 17-1045(1388)
11 PF11965 DUF3479: Domain of un 100.0 4.2E-36 9E-41 307.6 14.9 157 77-238 1-164 (164)
12 PRK02842 light-independent pro 75.2 27 0.00058 42.4 12.4 87 338-435 115-212 (427)
13 cd01976 Nitrogenase_MoFe_alpha 62.5 72 0.0016 38.8 12.3 92 337-433 116-218 (421)
14 PRK14478 nitrogenase molybdenu 62.3 63 0.0014 39.9 12.0 105 321-432 122-236 (475)
15 cd01972 Nitrogenase_VnfE_like 61.8 81 0.0017 38.3 12.6 94 338-433 107-212 (426)
16 cd01971 Nitrogenase_VnfN_like 59.0 1E+02 0.0022 37.5 12.7 107 321-432 89-205 (427)
17 PF03358 FMN_red: NADPH-depend 56.7 28 0.00061 35.4 6.5 21 77-97 1-21 (152)
18 TIGR01862 N2-ase-Ialpha nitrog 56.6 96 0.0021 37.9 12.1 105 321-433 121-237 (443)
19 cd03466 Nitrogenase_NifN_2 Nit 56.3 62 0.0013 39.4 10.4 103 321-433 87-219 (429)
20 cd01967 Nitrogenase_MoFe_alpha 54.6 1.2E+02 0.0026 36.2 12.4 91 338-433 105-206 (406)
21 TIGR01205 D_ala_D_alaTIGR D-al 53.2 42 0.0009 38.4 7.9 91 321-418 1-95 (315)
22 cd03557 L-arabinose_isomerase 51.3 91 0.002 38.7 10.7 181 337-553 23-212 (484)
23 PRK02929 L-arabinose isomerase 51.0 1.1E+02 0.0023 38.3 11.2 177 336-553 28-218 (499)
24 cd01968 Nitrogenase_NifE_I Nit 50.2 1.5E+02 0.0033 35.7 12.3 89 338-432 104-203 (410)
25 TIGR01285 nifN nitrogenase mol 49.6 1.3E+02 0.0029 36.7 11.7 90 321-416 94-198 (432)
26 PF01726 LexA_DNA_bind: LexA D 48.9 5.5 0.00012 35.8 -0.1 35 504-538 22-56 (65)
27 cd01965 Nitrogenase_MoFe_beta_ 48.0 1.9E+02 0.0041 35.1 12.7 105 321-433 84-220 (428)
28 TIGR01282 nifD nitrogenase mol 48.0 1.5E+02 0.0033 36.6 12.0 91 337-433 149-253 (466)
29 cd01966 Nitrogenase_NifN_1 Nit 44.3 1.8E+02 0.0039 35.4 11.7 76 338-417 99-189 (417)
30 TIGR01860 VNFD nitrogenase van 43.0 2.5E+02 0.0054 34.7 12.7 91 337-432 144-246 (461)
31 PF06792 UPF0261: Uncharacteri 42.8 53 0.0012 39.7 6.7 152 317-503 183-339 (403)
32 PRK14476 nitrogenase molybdenu 42.8 1.8E+02 0.0039 35.8 11.5 91 321-417 95-200 (455)
33 cd01977 Nitrogenase_VFe_alpha 41.3 2.9E+02 0.0062 33.5 12.8 91 338-433 106-208 (415)
34 PRK02399 hypothetical protein; 38.6 72 0.0016 38.6 6.9 91 316-418 183-277 (406)
35 PF03808 Glyco_tran_WecB: Glyc 36.5 3.3E+02 0.0072 28.8 10.9 73 77-156 49-123 (172)
36 PRK14477 bifunctional nitrogen 35.4 2.4E+02 0.0052 38.0 11.7 91 337-433 129-230 (917)
37 TIGR01283 nifE nitrogenase mol 35.2 3.4E+02 0.0074 33.3 12.2 89 338-432 139-242 (456)
38 TIGR00640 acid_CoA_mut_C methy 34.9 1E+02 0.0022 31.5 6.4 75 293-387 38-112 (132)
39 cd01979 Pchlide_reductase_N Pc 34.5 2.7E+02 0.0058 33.5 11.0 85 338-433 105-199 (396)
40 cd05296 GH4_P_beta_glucosidase 33.8 1.1E+02 0.0024 37.3 7.6 56 76-143 29-85 (419)
41 cd01541 PBP1_AraR Ligand-bindi 33.5 1.4E+02 0.0029 32.9 7.8 84 321-418 1-89 (273)
42 PF04459 DUF512: Protein of un 32.6 73 0.0016 35.1 5.3 97 52-175 75-171 (204)
43 cd01974 Nitrogenase_MoFe_beta 32.3 3.6E+02 0.0078 32.9 11.8 90 321-417 88-192 (435)
44 COG0300 DltE Short-chain dehyd 31.9 88 0.0019 35.9 6.0 63 334-397 38-101 (265)
45 cd01973 Nitrogenase_VFe_beta_l 30.5 2.5E+02 0.0055 34.5 10.1 73 338-418 105-194 (454)
46 PRK14569 D-alanyl-alanine synt 30.2 1.2E+02 0.0026 34.8 6.9 85 319-418 3-88 (296)
47 PRK01372 ddl D-alanine--D-alan 29.9 1.5E+02 0.0032 33.8 7.5 82 321-418 6-88 (304)
48 cd06281 PBP1_LacI_like_5 Ligan 29.1 1.9E+02 0.0042 31.6 8.1 82 321-418 1-85 (269)
49 TIGR01861 ANFD nitrogenase iro 28.9 6.2E+02 0.013 31.9 13.0 92 337-433 145-248 (513)
50 PRK14571 D-alanyl-alanine synt 28.4 1.3E+02 0.0027 34.5 6.6 83 321-418 2-85 (299)
51 cd07062 Peptidase_S66_mccF_lik 28.4 1.5E+02 0.0033 34.5 7.3 64 321-389 2-75 (308)
52 cd01575 PBP1_GntR Ligand-bindi 28.2 1.9E+02 0.0041 31.4 7.8 84 321-418 1-84 (268)
53 PRK14477 bifunctional nitrogen 27.5 2.6E+02 0.0057 37.6 10.1 88 321-417 574-676 (917)
54 TIGR00696 wecB_tagA_cpsF bacte 27.4 1.3E+02 0.0028 32.3 6.0 68 77-152 49-118 (177)
55 PRK08057 cobalt-precorrin-6x r 27.3 88 0.0019 35.4 5.0 75 335-420 10-100 (248)
56 TIGR01284 alt_nitrog_alph nitr 27.2 4E+02 0.0087 32.8 11.0 91 338-433 143-245 (457)
57 PF13271 DUF4062: Domain of un 27.2 1.2E+02 0.0026 28.2 5.0 22 118-139 37-58 (83)
58 cd06295 PBP1_CelR Ligand bindi 27.2 1.8E+02 0.0038 32.0 7.4 84 320-418 4-93 (275)
59 TIGR02690 resist_ArsH arsenica 26.9 1.9E+02 0.0042 32.2 7.4 51 60-111 11-63 (219)
60 cd00532 MGS-like MGS-like doma 26.5 2.5E+02 0.0053 27.6 7.4 69 346-419 38-106 (112)
61 TIGR02932 vnfK_nitrog V-contai 26.1 3.1E+02 0.0068 33.8 9.8 89 321-418 93-198 (457)
62 TIGR02931 anfK_nitrog Fe-only 25.3 3.8E+02 0.0081 33.1 10.3 88 321-418 96-201 (461)
63 cd08170 GlyDH Glycerol dehydro 24.9 1.6E+02 0.0035 34.7 6.8 93 321-429 24-117 (351)
64 KOG3923 D-aspartate oxidase [A 24.9 43 0.00093 38.9 1.9 72 1032-1124 142-213 (342)
65 cd03817 GT1_UGDG_like This fam 24.4 64 0.0014 36.1 3.3 35 498-540 1-35 (374)
66 PRK10569 NAD(P)H-dependent FMN 23.4 1.9E+02 0.004 31.4 6.4 15 77-91 1-15 (191)
67 cd07409 MPP_CD73_N CD73 ecto-5 23.2 9.6E+02 0.021 27.3 12.5 44 496-539 139-185 (281)
68 cd06273 PBP1_GntR_like_1 This 23.0 2.4E+02 0.0053 30.6 7.4 84 321-418 1-84 (268)
69 PF01866 Diphthamide_syn: Puta 22.6 1.6E+02 0.0035 34.3 6.1 82 317-419 207-288 (307)
70 cd06533 Glyco_transf_WecG_TagA 22.6 1.9E+02 0.0041 30.7 6.2 62 76-143 46-109 (171)
71 COG2984 ABC-type uncharacteriz 22.4 9.2E+02 0.02 28.6 11.9 159 316-539 27-191 (322)
72 cd04955 GT1_like_6 This family 22.3 69 0.0015 36.3 3.0 35 498-540 1-36 (363)
73 PF02219 MTHFR: Methylenetetra 22.0 2.8E+02 0.0061 31.8 7.9 83 78-160 101-199 (287)
74 TIGR02069 cyanophycinase cyano 21.9 1.5E+02 0.0033 33.5 5.6 84 49-140 2-89 (250)
75 cd00578 L-fuc_L-ara-isomerases 21.9 6.3E+02 0.014 30.9 11.3 69 336-419 22-95 (452)
76 PRK10307 putative glycosyl tra 21.4 89 0.0019 37.0 3.8 36 497-540 1-36 (412)
77 PLN02540 methylenetetrahydrofo 21.0 4.4E+02 0.0094 33.6 9.7 64 96-159 118-195 (565)
78 PF00731 AIRC: AIR carboxylase 21.0 3.7E+02 0.0081 28.3 7.7 69 78-151 2-72 (150)
79 PF14044 NETI: NETI protein 20.1 63 0.0014 28.6 1.6 17 523-539 8-24 (57)
80 COG0157 NadC Nicotinate-nucleo 20.1 2.3E+02 0.0049 32.9 6.3 59 81-148 161-223 (280)
81 PF00670 AdoHcyase_NAD: S-aden 20.1 51 0.0011 35.1 1.2 77 1002-1087 5-88 (162)
No 1
>PLN03069 magnesiumprotoporphyrin-IX chelatase subunit H; Provisional
Probab=100.00 E-value=3.7e-299 Score=2790.34 Aligned_cols=1116 Identities=86% Similarity=1.326 Sum_probs=1039.9
Q ss_pred ceeecCccccccccCCCCCCCcEEEEEEEcccchhHHHHHHHHHHHhhcCCceEEEEEeehhhccChhhHHHHHHHhhcC
Q 001056 55 LFTQTSPEVRRIVPENRDNLPTVKIVYVVLEAQYQSALSAAVQALNQQVNYASYEVVGYLVEELRDVDTYKTFCKDLENA 134 (1171)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a 134 (1171)
|||+++++.||++|+..++|..||||+||+++|+++++.+|++.|+++++++.|+||+|+++++++++++++|++||++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~a~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~a 80 (1220)
T PLN03069 1 LFTQTNPEVRRIVPEDRRGRPTVKVVYVVLEAQYQSSLSAAVQNLNATSRKVCFEVVGYLVEELRDADNYETFKKDVEDA 80 (1220)
T ss_pred CCCcccccccccCccccCCcceEEEEEEEchHHhHHHHHHHHHHhhhcCCCceEEEEEeehhhccCchhHHHHHHHHhcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeccccHHHHHHHHHHHHHhhcccCEEEeccChhhHhhhcccCcccccccCCCCchhHHHHHhhhcc-CCcHHHHH
Q 001056 135 NIFIGSLIFVEELALKIKAAVEKERDRLDAVLVFPSMPEVMRLNKLGSFSMSQLGQSKSPFFQLFKKKKQG-AGFADSML 213 (1171)
Q Consensus 135 d~~~~sllf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~v~~~t~lG~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 213 (1171)
||||+||||++|+++||.++|++++++||++|||+|+||+|++||||+|+|++++++++.+++++||.+.. .+++++|+
T Consensus 81 d~~~~sl~f~~~~~~~~~~~l~~~~~~~~~~~~~~s~~e~~~ltr~G~f~m~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ 160 (1220)
T PLN03069 81 NIFIGSLIFVEELAEKVKEAVEPERDRLDAVLVFPSMPEVMRLNKLGSFSMSQLGQSKSAFAQFMKKKKQENGGFEEGML 160 (1220)
T ss_pred CEEEEecccchhhHHHHHHHHHHhhcCCCeEEEEechHHHHHHhcccceecccccCCCcchhHHHHhhhhccCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999998778888889999996422 23678999
Q ss_pred HHHHhCCCeeEEcCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCccccCCCcCCCCcccccccccccCCCCCC
Q 001056 214 KLVRTLPKVLKYLPSDKAQDARLYILSLQFWLGGSPDNLQNFLKMISGSYVPALRGQKIEYADPVLFLDTGIWHPLAPCM 293 (1171)
Q Consensus 214 ~~~~~~~~~l~~lPg~~~~d~~~~~~~~~Y~~~Gg~eN~~nll~~l~~~y~~~~~g~~~~~~~P~~~P~~GiyHP~~~~~ 293 (1171)
+++|++||+|+||||+|+||+|+|+.+++||.+||.||++|||+||+++|++.+.+..++++||+++|+.|||||+++.+
T Consensus 161 ~~~~~~~k~l~~iP~~~~~D~r~~~~~~~Y~~~Gg~eN~~n~l~~l~~~y~~~~~~~~~~~~~P~~~P~~GiyHPd~~~~ 240 (1220)
T PLN03069 161 KLVRTLPKVLKYLPSDKAQDARNFMMSLQFWLGGSPDNLENFLLMISGSYVPALKGVKIEYADPVLFLDTGIWHPLAPTM 240 (1220)
T ss_pred HHHHhhhhceeecCCCchhCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhccCCCCCCCchhccccEeeCCCCccc
Confidence 99999999999999999999999999999999999999999999999999865445457889999999999999999999
Q ss_pred cCCHHHHHHHhccCCCcccccCCCCCCeEEEEeeccccccCCChHHHHHHHHHHHCCCcEEEEEecCCCCchhhhHhhcc
Q 001056 294 YDDVKEYLNWYGTRKDTNEKLKGPDAPVIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVD 373 (1171)
Q Consensus 294 f~~~~~Y~~Wy~~~~~~~~~~~~~~~p~Vgil~yrs~~~~g~~~~~daLI~~LE~~G~~vipvf~~gl~~~~~v~~~f~~ 373 (1171)
|+++.+|++||+++.+...+.+++++|||||+|||+|+++||++|+|+||++||++|+||+|||++|++++.++++||++
T Consensus 241 f~~~~~yl~w~~~~~~~~~~~y~~~~p~Vgil~~r~~~~~~~~~~idalI~~LE~~G~~vipvf~~gl~~~~~~~~~~~~ 320 (1220)
T PLN03069 241 YEDVKEYLNWYDTRRDMNFALKDKDAPVVGLVLQRSHIVTGDDGHYVAVVMELEARGAKVVPIFAGGLDFSGPVERFFYD 320 (1220)
T ss_pred cCCHHHHHHHHhhcccccccccCCCCCEEEEEechhhhhcCCcHHHHHHHHHHHHCCCeEEEEEecCccccchHHHHHHh
Confidence 99999999999765332222345779999999999999999999999999999999999999999999988899999885
Q ss_pred ccCCCccceeeeecccccccCCCCCCCchhHHHHhhhCCCcEEeEecCCCCCHHHHhcCCCCCChhhhhhheeccccCcc
Q 001056 374 PVMKKPMVNSAISLTGFALVGGPARQDHPRAIEALRKLDVPYIVALPLVFQTTEEWLNSTLGLHPIQVALQVALPELDGG 453 (1171)
Q Consensus 374 ~~~~~~~VDavIn~tgFsL~ggpa~~~~~~~~~~L~~LnVPvl~ai~l~~qt~eeW~~s~~GL~p~~~~~~ValPElDG~ 453 (1171)
...+++.||+|||+|||+|+|||++++.++++++|++|||||||++++++||.++|++|++||+|+|++|+|+||||||+
T Consensus 321 ~~~~~~~vDaiIn~tgF~L~ggpa~~~~~~a~~~L~~lnVPvl~~~~l~~qt~e~W~~s~~Gl~p~~~~~~ValPElDG~ 400 (1220)
T PLN03069 321 PITKKPIVDSVVSLTGFALVGGPARQDHPKAIEALKKLDVPYLVALPLVFQTTEEWLDSTLGLHPIQVALQVALPELDGG 400 (1220)
T ss_pred hhcCCCCccEEEECCcccccCCcccccchhhHHHHHHCCCCEEEEEecCCCCHHHHHhCCCCCCHHHhhheeechhhCCc
Confidence 33578899999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEEEecCCCCccccchHHHHHHHHHHHHHHHcccCCCCCceEEEEeecCCCCCCCccccCCCChHHHHHHHHHHHH
Q 001056 454 LEPIVFAGRDPRTGKAHALHKRVEQLCTRAIRWGELKRKTKAEKKLAITVFSFPPDKGNIGTAAYLNVFSSIFSVLKDLQ 533 (1171)
Q Consensus 454 I~piv~~g~~~~~~~~~pipeRi~~la~r~~~W~~LR~kpn~eKKVAIil~nyPp~~g~iGtAa~LDv~~Sl~~iL~~Lk 533 (1171)
|+|++|||++..++.++|+||||+++|+|+++|++||+|||+||||||||||||||++|||||+|||||+||++||++||
T Consensus 401 I~piv~~g~~~~~~~~~pi~eRie~la~r~~~w~~Lr~k~n~eKKVAIil~nyPpg~g~iGtAa~LDv~~Sl~~iL~~Lk 480 (1220)
T PLN03069 401 LEPIVFAGRDSRTGKSHALHDRVEQLCTRAIKWANLKRKTKAEKKLAITVFSFPPDKGNVGTAAYLNVFGSIFSVLKDLK 480 (1220)
T ss_pred eeeEEEEEEecCCCceecCHHHHHHHHHHHHHHHHHccCChhhCEEEEEecCCCCCCCccccccccChHHHHHHHHHHHH
Confidence 99999999987778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCCCCCCCCCHHHHHHHHHhccccccCCccccccccccHHHHhhhhHHHHHHHHHhCCCCCCCCCCCCeEEEeeeeec
Q 001056 534 RDGYNVEGLPETSEALIEEIIHDKEAQFSSPNLNIAYKMGVREYQSLTPYATALEENWGKPPGNLNSDGENLLVYGKQYG 613 (1171)
Q Consensus 534 ~~GY~vg~~P~~~~~L~~~il~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~i~~~WG~ppG~~~~~g~~~~I~G~~fG 613 (1171)
++||+|+++|+|+++|+++|++++...|.+.+.+++..+|+++|++|++++++|+++||+|||+++++|++|+|||++||
T Consensus 481 ~~GY~v~~lP~~~~~L~~~l~~~~~~~~~~~~~~~~~~v~~~~Y~~~~~~~~~i~~~WG~~pG~~~~~g~~~~I~G~~fG 560 (1220)
T PLN03069 481 RDGYNVGGLPETEEALIESVLHDKEAKFSSPNLNVAYKMSVREYQKLTPYAEALEENWGKPPGNLNSDGQNLLVYGKQYG 560 (1220)
T ss_pred HCCCCcCCCCCCHHHHHHHHHhccccCcCCcccccccccCHHHHHHHHHHHHHHHHHhCCCCCCcCCCCCeEEEeeeeeC
Confidence 99999999999999999999988777787776677788999999999999999999999999999999988999999999
Q ss_pred cEEEeeCCCCCCCCCccccccCCCCCCCchhHHHHHHHhhhcCccEEEEecCCCcCCCCCCCccCCCCCCccccccCCCC
Q 001056 614 NVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYSFVEKIFKADAVLHFGTHGSLEFMPGKQVGMSDVCYPDSLIGNIP 693 (1171)
Q Consensus 614 NVfIgvQP~RG~~~Dp~~lyHd~~lpP~HqYlAfY~WL~~~F~ADAviH~GtHGtLEwLPGK~vGLS~~cwPd~liGdlP 693 (1171)
||||||||+|||++|||++|||+++||||||+|||+||+++|+||||||||||||||||||||+|||++||||+|||+||
T Consensus 561 NVfIgvQP~rG~~~dp~~lyhd~~~pP~HqYlAfY~WL~~~F~ADAviH~GtHGtlEwLPGK~vGLS~~cwPd~liGdlP 640 (1220)
T PLN03069 561 NVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYTFLEKIFKADAVLHFGTHGSLEFMPGKQVGMSDACYPDSLIGNIP 640 (1220)
T ss_pred CEEEEcCCCCccCCCchhhhcCCCCCCChhHHHHHHHHHhhcCCCEEEEcCCCCCcccCCCccccCCcccChHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEecCCcchhhHHhhhccccccccCCCCCcCCCCchHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHcCCcccC
Q 001056 694 NVYYYAANNPSEATIAKRRSYANTISYLTPPAENAGLYKGLKQLSELISSYQSLKDTGRGPQIVSSIISTAKQCNLDKDV 773 (1171)
Q Consensus 694 niY~YivnnPgEg~~AKRR~~AviIsHLtPP~~~AgLY~~L~eL~~li~eY~~~~~~~~~~~l~~~I~~~a~~~~L~~dl 773 (1171)
|||||||||||||+||||||||||||||||||++||||++|++|++||++|+++.++.++..+++.|+++|+++||+.|+
T Consensus 641 niY~Y~vnNPgEg~~AKRR~~AviIsHLtPP~~~AgLY~~L~~L~~li~eY~~~~~~~~~~~l~~~I~~~a~~l~L~~dl 720 (1220)
T PLN03069 641 NVYYYAANNPSEATIAKRRSYANTISYLTPPAENAGLYKGLKQLSELISSYQSLKDSGRGPQIVSSIISTAKQCNLDKDV 720 (1220)
T ss_pred EEeEEeCCCcchHHHHHhcccceeeecCCCCcccccccHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHcCCchhc
Confidence 99999999999999999999999999999999999999999999999999999888878889999999999999999999
Q ss_pred CCCcccccCChHHHhHHHHHHHHHHHHHHhccCCCCceecccCCChHHHHHHHHHHHhcCCCcccccchhHHHHHHhCCC
Q 001056 774 ELPDEGAEISAKERDLVVGKVYSKIMEIESRLLPCGLHVIGEPPSALEAVATLVNIAALDRPEDEIASLPSILAETVGRD 853 (1171)
Q Consensus 774 ~~~~~~~~~~~~~~d~~v~~l~~yL~el~~~~ip~GLHv~G~~p~~e~~~~~l~~~~~~~r~~~~~~sL~~~la~~~g~~ 853 (1171)
+++.....++.++|++++.+||+||||||+++||+||||||++|++|++++++.+|++++|++.++.||++++++.+|++
T Consensus 721 ~~~~~~~~~~~~~~~~~~~~l~~yL~el~~~~Ip~GLHv~G~~p~~e~l~~~l~~i~~~~~~~~~~~sl~~~l~~~~g~d 800 (1220)
T PLN03069 721 DLPEEAAELSADERDLVVGKVYSKIMEIESRLLPCGLHVIGEPPSAEEAVATLVNIAALDRPEDNISGLPGILAEAVGRE 800 (1220)
T ss_pred CCCccccccccccHHHHHHHHHHHHHHHHhhhcCCCCeecCCCCChHHHHHHHHHHHhcccccccccchHHHHHHhhccc
Confidence 87654445555678999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred hhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhhccccCCchHHHHHHHHhhhccCCCchhhhhhcccccccccHHHH
Q 001056 854 IEDIYRGSDKGILKDVELLRQITEASRGAISAFVEKTTNKKGQVVDVADKLSSILGFGINEPWIQYLSNTKFYRADRATL 933 (1171)
Q Consensus 854 ~~~l~~~~~~~~~~~~~ll~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 933 (1171)
+++++.+.+.+..+..++++++.+.|+++|+.++.......++..+..+.++..++.+...++...+..........+.+
T Consensus 801 ~~~l~~~~~~~~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 880 (1220)
T PLN03069 801 IEDVYRGNDKGILADVELLQEITEASRAAVRAFVEKTTNSKGQVVNVANKLTSLLGFGVKEPWVEALSNTKFYDADREKL 880 (1220)
T ss_pred hhhhhcccccccchhHHHHHHHHHHHHHHHHHHhhccccccccchhhhhhhhhhhccccchhhhhhhhcccccccchHHH
Confidence 99999888777778888899999999999999998776666665544444444443222222322222111122234567
Q ss_pred HHHHHHHHHHHhhhccchhHHHHHhhhCCCccCCCCCCCCCCCCCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHHHH
Q 001056 934 RTLFEFVGECLKLVVADNELGSLKQALEGKYVEPGPGGDPIRNPKVLPTGKNIHALDPQAIPTTAAMQSAKVVVDRLIER 1013 (1171)
Q Consensus 934 ~~~~~~l~~~~~~~~~~~El~~LL~aL~G~YI~PgpgGdp~R~pdvLPTGRNfys~DP~~iPT~aAw~~G~~lA~~lL~~ 1013 (1171)
+.++++++.+..++++++|+++||+||+|+||+|||||||+|||+|||||||||+|||++|||++||++|+++|++||++
T Consensus 881 ~~~~~~~~~~~~~~~~~~El~~LL~AL~G~yI~PgpgGdp~R~pdvLPTGRN~ys~DP~~iPT~aAw~~G~~lA~~lL~~ 960 (1220)
T PLN03069 881 RTLFDFLGFCLKQVVADNELGGLKEALEGQYVEPGPGGDPIRNPKVLPTGKNIHALDPQAIPTTAALASAKVVVDRLLER 960 (1220)
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHhCCcccCCCCCCccccCCCCCCCCCCccCcCcccCCCHHHHHHHHHHHHHHHHH
Confidence 78888888887777888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCceEEEEEEecccccccChhHHHHHHHhCCeeccCCCCCceeeEEecccccCCCceeEEEecCcchhhhHH
Q 001056 1014 QKVDNGGKYPETVALVLWGTDNIKTYGESLAQVLWMIGVRPVSDTFGRVNRVEPVSLEELGRPRIDVVVNCSGVFRDLFI 1093 (1171)
Q Consensus 1014 y~~e~~G~yPe~va~vLWgtdtmrt~Ge~iAqiL~LlGvrPvwd~~GrV~g~ElIPL~ELgRPRIDVvv~iSGiFRD~Fp 1093 (1171)
|+++|||+||||||+||||||||||+|++|||||||||||||||++|||+|+|||||+||||||||||||+||||||+||
T Consensus 961 y~~e~~G~yPe~Ia~vLWgtdtmrt~Ge~iAqiL~LlGvrPvwD~~GrV~g~elIPLeELGRPRIDVvv~iSGiFRD~fp 1040 (1220)
T PLN03069 961 QKDENGGKYPETIALVLWGTDNIKTYGESLAQVLWMVGVRPVADALGRVNKVEPVSLEELGRPRIDVVVNCSGVFRDLFI 1040 (1220)
T ss_pred HHHHcCCCCCceeEEEEEcHHhhhhCCHHHHHHHHHcCCeeeeCCCCCcCceEEeCHHHcCCCCeeEEEEecchHHHhHH
Confidence 98777799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHcCCCcccccccccCCCCCCchhchhhHhhcCCCCChhhhhhh
Q 001056 1094 NQMNLLDRAVKMVAELDEPEEQNYVRKHALEQAKALGIDVREAATRVFSNASGSYSSNINLAVENSSWNDEKQLQTC 1170 (1171)
Q Consensus 1094 ~~i~LlD~Av~~aA~lDEp~e~N~Vrkh~~~~~~~~G~~~~~A~~RIFg~~pG~YGagV~~lVes~~We~e~dLad~ 1170 (1171)
|||+|||+||++||++|||+|+||||||++++.+++|++.++|+.||||++||+||||||++|++|+|++++||||+
T Consensus 1041 ~~i~LlD~Av~~aA~~dEp~e~N~Vrkh~~~~~~~~G~~~~~A~~RIFg~~pG~YGagV~~lVe~s~We~e~eLad~ 1117 (1220)
T PLN03069 1041 NQMNLLDRAVKMVAELDEPAEMNFVRKHALEQAEELGVSIREAATRVFSNASGSYSSNVNLAVENSSWNDEKQLQDM 1117 (1220)
T ss_pred HHHHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHhcCCChhhcccceecCCCCchhhhHHHHHhcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999888999999999999999999999999999999999999999996
No 2
>PRK12493 magnesium chelatase subunit H; Provisional
Probab=100.00 E-value=3.8e-289 Score=2711.50 Aligned_cols=1097 Identities=63% Similarity=1.065 Sum_probs=1006.3
Q ss_pred ccccccCCCCCCCcEEEEEEEcccchhHHHHHHHHHHHhhcCCceEEEEEeehhhccChhhHHHHHHHhhcCCEEEEecc
Q 001056 63 VRRIVPENRDNLPTVKIVYVVLEAQYQSALSAAVQALNQQVNYASYEVVGYLVEELRDVDTYKTFCKDLENANIFIGSLI 142 (1171)
Q Consensus 63 ~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ad~~~~sll 142 (1171)
+|||+|+..+++..||||+||+++|+++++.+|++.|++++ ++.++|+.|+++++++++++++|++||++|||||+|||
T Consensus 1 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~a~~~l~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ad~~~~sl~ 79 (1310)
T PRK12493 1 IRRVAPEDLNGRSLMKFVYVVLEPQYQSALSAAAASLNREN-KLALELSGYLIEELRDPENWEEFKRDVARADFFFGSLL 79 (1310)
T ss_pred CCCcCccccCCcceEEEEEEEeeHHhHHHHHHHHHHhhhcc-CCceEEEEeehhhccCchhHHHHHHHHhhCCEEEeecc
Confidence 59999999999999999999999999999999999999999 68999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhhcccCEEEeccChhhHhhhcccCccccccc-CCCCchhHHHHHhhh--ccCCcHHHHHHHHHhC
Q 001056 143 FVEELALKIKAAVEKERDRLDAVLVFPSMPEVMRLNKLGSFSMSQL-GQSKSPFFQLFKKKK--QGAGFADSMLKLVRTL 219 (1171)
Q Consensus 143 f~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~v~~~t~lG~f~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 219 (1171)
|++|+++|+.++|++++++|+++|||+|+||+|++||||+|+|++. +++++.+++++||.+ .+.|++++||+++|++
T Consensus 80 f~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~ltr~G~f~m~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~ 159 (1310)
T PRK12493 80 FIEDLARPLVEALAPARDRLCPVCVIPSMPALMRLTKLGSFSLAQELGQSKSAIAQFMKKRKPKGGAGEQDRMLKLLRTL 159 (1310)
T ss_pred CcHHHHHHHHHHHHHhhcCCCeEEEEcChHHHHHhhcccceeccccccCCccchhHHHHHhhhccCCChHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999864 566777899999954 3456789999999999
Q ss_pred CCeeEEcCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCccccCCCcCCCCcccccccccccCCCCCCcCCHHH
Q 001056 220 PKVLKYLPSDKAQDARLYILSLQFWLGGSPDNLQNFLKMISGSYVPALRGQKIEYADPVLFLDTGIWHPLAPCMYDDVKE 299 (1171)
Q Consensus 220 ~~~l~~lPg~~~~d~~~~~~~~~Y~~~Gg~eN~~nll~~l~~~y~~~~~g~~~~~~~P~~~P~~GiyHP~~~~~f~~~~~ 299 (1171)
||+||||| +|+||+|+|+.+++||.+||.||++|||+||+.+|+....+ .++++||+++|+.|||||+++.+|+++.+
T Consensus 160 ~~~l~~iP-~ka~d~r~~~~~~~Y~~~Gg~eN~~nll~~l~~~~~~~~~~-~~~~~~P~~~P~~GiyhP~~~~~f~~~~~ 237 (1310)
T PRK12493 160 PKVLKYLP-GKAQDARTFILSHQYWLGGSPENLENFLLMLIDRYVPGYKG-KLPQLDPVFYPDLGIWHPLAPEMFEDLKE 237 (1310)
T ss_pred HHHHhhCc-hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHhcccccc-CCCCCCCcccCCccccCCCcccccCCHHH
Confidence 99999999 69999999999999999999999999999999999743222 46789999999999999999999999999
Q ss_pred HHHHhccCCCcccccCCCCCCeEEEEeeccccccCCChHHHHHHHHHHHCCCcEEEEEecCCCCchhhhHhhccc-cCCC
Q 001056 300 YLNWYGTRKDTNEKLKGPDAPVIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVDP-VMKK 378 (1171)
Q Consensus 300 Y~~Wy~~~~~~~~~~~~~~~p~Vgil~yrs~~~~g~~~~~daLI~~LE~~G~~vipvf~~gl~~~~~v~~~f~~~-~~~~ 378 (1171)
|++||+++... ..+++|+|||+|||+|+++||++|+|+||++||++|++|+|||++|++++.++++||.+. ..++
T Consensus 238 y~~w~~~~~~~----~~~~~p~Vgil~~r~~~~~~d~~~~dalI~~LE~~G~~vipvf~~gl~~~~~v~~~~~~~~~~~~ 313 (1310)
T PRK12493 238 YLNWYNKRRDI----SDKLAPTVGLLLQRTHLLTGNDAHYVALIQELEARGARVIPAYAGGLDFRKPVEAFFYDPGNPDT 313 (1310)
T ss_pred HHHHHhhcccc----ccCCCCEEEEEEchhhhhcCCcHHHHHHHHHHHHCCCeEEEEEecCcccchHHHHHHHhhcccCC
Confidence 99999754211 123489999999999999999999999999999999999999999999999999999863 1467
Q ss_pred ccceeeeecccccccCCCCCCCchhHHHHhhhCCCcEEeEecCCCCCHHHHhcCCCCCChhhhhhheeccccCcceeeEE
Q 001056 379 PMVNSAISLTGFALVGGPARQDHPRAIEALRKLDVPYIVALPLVFQTTEEWLNSTLGLHPIQVALQVALPELDGGLEPIV 458 (1171)
Q Consensus 379 ~~VDavIn~tgFsL~ggpa~~~~~~~~~~L~~LnVPvl~ai~l~~qt~eeW~~s~~GL~p~~~~~~ValPElDG~I~piv 458 (1171)
+.||+|||+|+|+|+|||++++.++++++|++|||||||++++++||+++|++|++||+|+|++|+|+||||||+|+|++
T Consensus 314 ~~vDaiI~~t~F~l~ggpa~~~~~~a~~~L~~lnVPvl~~~~l~~qt~~~W~~s~~Gl~p~~~~~~ValPElDG~i~piv 393 (1310)
T PRK12493 314 PLVDLVVSLTGFALVGGPARQDHPKAIEALKKLNRPYMVALPLVFQTTEEWEESDLGLHPVQVALQVAIPELDGAIEPIV 393 (1310)
T ss_pred CCccEEEEcCcccccCCcccCcchhhHHHHHHCCCCEEEEEecCCCCHHHHHhCCCCcChHHhhheeecccccCeeeeEE
Confidence 88999999999999999999888888999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCccccchHHHHHHHHHHHHHHHcccCCCCCceEEEEeecCCCCCCCccccCCCChHHHHHHHHHHHHHCCCC
Q 001056 459 FAGRDPRTGKAHALHKRVEQLCTRAIRWGELKRKTKAEKKLAITVFSFPPDKGNIGTAAYLNVFSSIFSVLKDLQRDGYN 538 (1171)
Q Consensus 459 ~~g~~~~~~~~~pipeRi~~la~r~~~W~~LR~kpn~eKKVAIil~nyPp~~g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~ 538 (1171)
|||++..++.+.|+||||+++|+|+++|++||+|||+||||||||||||||++|||||+|||||+||++||++||++||+
T Consensus 394 ~~g~~~~~~~~~pi~eri~~la~r~~~w~~Lr~k~n~eKkVAIil~nyPpg~g~iG~Aa~LDv~~Sl~~iL~~Lk~~GY~ 473 (1310)
T PRK12493 394 LSGRDGATGKAIPLQDRIEAIAERAIRWVRLRRKPRAEKKLAITLFSFPPDKGNVGTAAYLDVFGSIYRLLQELKAAGYD 473 (1310)
T ss_pred EEEEecCCceeecCHHHHHHHHHHHHHHHHHccCChhhCEEEEEecCCCCCCCcccccccCChHHHHHHHHHHHHHCCCC
Confidence 99998767789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHhccccccCCccccccccccHHHHhhhhHHHHHHHHHhCCCCCCCCCCCCeEEEeeeeeccEEEe
Q 001056 539 VEGLPETSEALIEEIIHDKEAQFSSPNLNIAYKMGVREYQSLTPYATALEENWGKPPGNLNSDGENLLVYGKQYGNVFIG 618 (1171)
Q Consensus 539 vg~~P~~~~~L~~~il~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~i~~~WG~ppG~~~~~g~~~~I~G~~fGNVfIg 618 (1171)
| ++|+|+++|+++|++++...|.++..+++..+|+++|++|++.+++|+++||+|||++|++|++|+|||++|||||||
T Consensus 474 v-~~P~~~~eL~~~l~~~~~~~~~~~~~~~~~~i~~~~Y~~w~~~~~~i~~~WG~~pG~~~~~g~~~~I~G~~fGNVfIg 552 (1310)
T PRK12493 474 V-ELPESPKELMEAVLEDNRAQYGSPELNVAARLSVEEYERLTPYYERIEENWGPAPGELNSDGQNLLILGKHFGNVFIG 552 (1310)
T ss_pred C-CCCCCHHHHHHHHHhcCCCccCCccccccccCCHHHHHHHHHHHHHHHHHhCCCCCCcCCCCCEEEEeeeeECCEEEE
Confidence 9 899999999999998877777665557788999999999999999999999999999999998899999999999999
Q ss_pred eCCCCCCCCCccccccCCCCCCCchhHHHHHHHhhhcCccEEEEecCCCcCCCCCCCccCCCCCCccccccCCCCeeeEE
Q 001056 619 VQPTFGYEGDPMRLLFSKSASPHHGFAAYYSFVEKIFKADAVLHFGTHGSLEFMPGKQVGMSDVCYPDSLIGNIPNVYYY 698 (1171)
Q Consensus 619 vQP~RG~~~Dp~~lyHd~~lpP~HqYlAfY~WL~~~F~ADAviH~GtHGtLEwLPGK~vGLS~~cwPd~liGdlPniY~Y 698 (1171)
|||+|||++|||++|||+++||||||+|||+||+++|+||||||||||||||||||||+|||++||||+|||+|||||||
T Consensus 553 vQP~rG~~~d~~~l~h~~~~pP~HqYlAfY~WL~~~F~ADAviH~GtHGtlEwLPGK~vGLS~~cwPd~liG~lP~iY~Y 632 (1310)
T PRK12493 553 VQPSFGYERDPMRLLMSKDASPHHGFAAYYTWLEKVWGADAVLHFGTHGALEFMPGKQMGMSASCWPDRLIGSLPNFYYY 632 (1310)
T ss_pred eCCCCCcCCCchhhhcCCCCCCChhHHHHHHHHHhhcCCCEEEECCCCcCcccCCCccccCCcccChHHHhCCCCEEeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcchhhHHhhhccccccccCCCCCcCCCCchHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHcCCcccCCCCcc
Q 001056 699 AANNPSEATIAKRRSYANTISYLTPPAENAGLYKGLKQLSELISSYQSLKDTGRGPQIVSSIISTAKQCNLDKDVELPDE 778 (1171)
Q Consensus 699 ivnnPgEg~~AKRR~~AviIsHLtPP~~~AgLY~~L~eL~~li~eY~~~~~~~~~~~l~~~I~~~a~~~~L~~dl~~~~~ 778 (1171)
||||||||+||||||+|||||||||||++||||++|++|+++|++|+++.++.++..+++.|+++|+++||++|++++..
T Consensus 633 ivnNPgEg~~AKRR~~AviIsHLtPP~~~AgLY~~L~~L~~li~eY~~~~~~~~~~~l~~~I~~~a~~l~L~~dl~~~~~ 712 (1310)
T PRK12493 633 AVNNPSEATIAKRRGYATLISYLTPPAENAGLYKGLRELSELIGSYQQLPDSGRGIQIVNTIREKARQLNLDKDVDLPET 712 (1310)
T ss_pred eCCCcchHHHHHhcccceeeecCCCCcccccCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHcCCchhcCCCcc
Confidence 99999999999999999999999999999999999999999999999998887888999999999999999999987542
Q ss_pred c-ccCChHHHhHHHHHHHHHHHHHHhccCCCCceecccCCChHHHHHHHHHHHhcCCCcccccchhHHHHHHhCCChhhh
Q 001056 779 G-AEISAKERDLVVGKVYSKIMEIESRLLPCGLHVIGEPPSALEAVATLVNIAALDRPEDEIASLPSILAETVGRDIEDI 857 (1171)
Q Consensus 779 ~-~~~~~~~~d~~v~~l~~yL~el~~~~ip~GLHv~G~~p~~e~~~~~l~~~~~~~r~~~~~~sL~~~la~~~g~~~~~l 857 (1171)
. ..++.+++++++++||+||||||+++||+||||||++|++|++++++.+|+++++.+.++.||+++++..+|++|+++
T Consensus 713 ~~~~~~~~~~~~~l~~l~~yL~el~~~~ip~GLHv~G~~p~~e~l~~~l~~i~~~~~~~~~~~~L~~~ia~~~g~~~~~l 792 (1310)
T PRK12493 713 DAAELDEEERDAYVGALYRELMEIESRLIPCGLHVIGKPPTAEEAIDTLVLIASLDRPEEGIRSLPELIAESLGRDYEEL 792 (1310)
T ss_pred cccccccccHHHHHHHHHHHHHHHHhhhcCCCCeecCCCCChHHHHHHHHHHhccccccccccchHHHHHHHhccchhhh
Confidence 1 223345789999999999999999999999999999999999999999999998877778899999999999999999
Q ss_pred hcCCCCCcccHHHHHHHHHHHHHHHHHHHHhhccccCCchHHHHHHHHhhhccCCCchhhhhhcccccccccHHHHHHHH
Q 001056 858 YRGSDKGILKDVELLRQITEASRGAISAFVEKTTNKKGQVVDVADKLSSILGFGINEPWIQYLSNTKFYRADRATLRTLF 937 (1171)
Q Consensus 858 ~~~~~~~~~~~~~ll~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 937 (1171)
+.+...+.....++++.+.+.+++.++.++.......+.+..+.. ...+.......+............+.+.++.++
T Consensus 793 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 870 (1310)
T PRK12493 793 YRRNDRGVLADVELLQKITEITREAVRALVGELTGADGRVSLVSK--LNFFNMSLPRPWLAALYLAGYAGVDPGELKPLF 870 (1310)
T ss_pred hccccccccchHHHHHHHHHHHHHHHHHHHhhcccccccccccch--hhhhccccchhhhhhhhcccccccchHHHHHHH
Confidence 988877767777888999999999999988765443322100000 001111000111111111111222345677788
Q ss_pred HHHHHHHhhhccchhHHHHHhhhCCCccCCCCCCCCCCCCCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q 001056 938 EFVGECLKLVVADNELGSLKQALEGKYVEPGPGGDPIRNPKVLPTGKNIHALDPQAIPTTAAMQSAKVVVDRLIERQKVD 1017 (1171)
Q Consensus 938 ~~l~~~~~~~~~~~El~~LL~aL~G~YI~PgpgGdp~R~pdvLPTGRNfys~DP~~iPT~aAw~~G~~lA~~lL~~y~~e 1017 (1171)
+++..+..++++++|+++||+||+|+||+|||||||+|||+|||||||||+|||++|||++||++|+++|++||++|+ +
T Consensus 871 ~~~~~~~~~l~~~~El~~Ll~AL~G~yI~PgpgGdp~R~pdvLPTGRN~ys~DP~~iPT~aAw~~G~~lA~~lL~~y~-~ 949 (1310)
T PRK12493 871 EYLEFCLEQICADNELGSLLKALDGEYILPGPGGDPVRNPAVLPTGRNIHALDPQSIPTAAAVAAGKRVVDELLERQR-E 949 (1310)
T ss_pred HHHHHHHhhcCcHHHHHHHHHHhCCcccCCCCCCCcccCCCCCCCCCcccCcCcccCCCHHHHHHHHHHHHHHHHHHH-H
Confidence 888888777777899999999999999999999999999999999999999999999999999999999999999996 5
Q ss_pred cCCCCCceEEEEEEecccccccChhHHHHHHHhCCeeccCCCCCceeeEEecccccCCCceeEEEecCcchhhhHHHHHH
Q 001056 1018 NGGKYPETVALVLWGTDNIKTYGESLAQVLWMIGVRPVSDTFGRVNRVEPVSLEELGRPRIDVVVNCSGVFRDLFINQMN 1097 (1171)
Q Consensus 1018 ~~G~yPe~va~vLWgtdtmrt~Ge~iAqiL~LlGvrPvwd~~GrV~g~ElIPL~ELgRPRIDVvv~iSGiFRD~Fp~~i~ 1097 (1171)
+||+||||||+||||||||||+|++|||||||||||||||++|||+|+|||||+||||||||||||+||||||+|||||+
T Consensus 950 e~G~yPe~ia~vLWgtdt~rt~Ge~iAqiL~LlGvrPvwd~~GrV~g~elIPLeeLGRPRIDVvv~iSGiFRD~fp~~i~ 1029 (1310)
T PRK12493 950 EQGAWPETIACVLWGTDNIKTYGEGLAQALALVGARPVPDELGRVNKVELIPLEELGRPRIDVVVTCSGIFRDLFINQMA 1029 (1310)
T ss_pred hcCCCCceeEEEEEchhhhhhCCHHHHHHHHHcCCccccCCCCCccceEEeCHHHcCCCCeeEEEEecchhHhhHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCCCcchHHHHHHHHHHHcCCCcccccccccCCCCCCchhchhhHhhcCCCCChhhhhhh
Q 001056 1098 LLDRAVKMVAELDEPEEQNYVRKHALEQAKALGIDVREAATRVFSNASGSYSSNINLAVENSSWNDEKQLQTC 1170 (1171)
Q Consensus 1098 LlD~Av~~aA~lDEp~e~N~Vrkh~~~~~~~~G~~~~~A~~RIFg~~pG~YGagV~~lVes~~We~e~dLad~ 1170 (1171)
|||+||++||++|||+|+||||||++++.++.|++.++|+.||||++||+||||||++|++|+|++++||||+
T Consensus 1030 LlD~Av~laA~~dEp~e~N~Vrkh~~~~~~~~G~~~~~A~~RIFg~~pG~YGagv~~lVe~~~We~e~eLa~~ 1102 (1310)
T PRK12493 1030 LLDQAVKLAAEADEPLEMNFVRKHALEQAEELGISLREAATRVFSNASGSYGANVNLLVENSTWEEESELQEM 1102 (1310)
T ss_pred HHHHHHHHHHhCCCCcccCHHHHHHHHHHHhcCCCHHhcccceecCCCCchhhhHHHHHhcCCCCCHHHHHHH
Confidence 9999999999999999999999999999888999999999999999999999999999999999999999996
No 3
>TIGR02025 BchH magnesium chelatase, H subunit. This model represents the H subunit of the magnesium chelatase complex responsible for magnesium insertion into the protoporphyrin IX ring in the biosynthesis of both chlorophyll and bacteriochlorophyll. In chlorophyll-utilizing species, this gene is known as ChlH, while in bacteriochlorophyll-utilizing spoecies it is called BchH. Subunit H is the largest (~140kDa) of the three subunits (the others being BchD/ChlD and BchI/ChlI), and is known to bind protoporphyrin IX. Subunit H is homologous to the CobN subunit of cobaltochelatase and by anology with that enzyme, subunit H is believed to also bind the magnesium ion which is inserted into the ring. In conjunction with the hydrolysis of ATP by subunits I and D, a conformation change is believed to happen in subunit H causing the magnesium ion insertion into the distorted protoporphyrin ring.
Probab=100.00 E-value=4.2e-282 Score=2624.18 Aligned_cols=1003 Identities=50% Similarity=0.878 Sum_probs=928.2
Q ss_pred EEEEEEEcccchhHHHHHHHHHHHhhcCCceEEEEEeehhhccChhhHHHHHHHhhcCCEEEEeccccHHHHHHHHHHHH
Q 001056 77 VKIVYVVLEAQYQSALSAAVQALNQQVNYASYEVVGYLVEELRDVDTYKTFCKDLENANIFIGSLIFVEELALKIKAAVE 156 (1171)
Q Consensus 77 ~~~v~v~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ad~~~~sllf~~~~~~~~~~~~~ 156 (1171)
||||+||+++|+++++.+|++.|+++++ +.++|+.|+.+|+++++++++|++||++|||||+||||++|+++++.++|+
T Consensus 1 ~~~v~~~~~~~~~~~~~~a~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~ad~~~~sl~f~~~~~~~~~~~l~ 79 (1216)
T TIGR02025 1 MRIVLIVGEEQYNAALSRAAANLNRELP-LDIDLTIFVLSDLDEPEKRLEFEQAIQEADLFFGSMLFDEDQVDWLREVLS 79 (1216)
T ss_pred CEEEEEechHHhhHHHHHHHHHhhhcCC-CceEEEEeehhhccChhhHHHHHHHHhhCCEEEeecccCHHHHHHHHHHHH
Confidence 6899999999999999999999999999 889999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCEEEeccChhhHhhhcccCcccccccCCCCchhHHHHHhhhcc-----CCcHHHHHHHHHhCCCeeEEcCCCCh
Q 001056 157 KERDRLDAVLVFPSMPEVMRLNKLGSFSMSQLGQSKSPFFQLFKKKKQG-----AGFADSMLKLVRTLPKVLKYLPSDKA 231 (1171)
Q Consensus 157 ~~~~~~~~~~~~~s~~~v~~~t~lG~f~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~lPg~~~ 231 (1171)
+++++||++|||+|+||+|++||||+|+|++ +++++.+++++||.+.+ .+..++|++++|++||+||||| +|+
T Consensus 80 ~~~~~~~~~~~~~s~~e~~~ltr~G~f~m~~-~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iP-~ka 157 (1216)
T TIGR02025 80 QIRNQEDTVVVFESMPELMKLTKLGSFAMGK-PAEKSGMPKPVKKIADKSNGRGEDKLAGYMKLLKIVPKLLKFIP-GKA 157 (1216)
T ss_pred hhccCCCeEEEecChHHHHHhhcccceeccc-CCCcccchHHHHHHhhccCCCccccHHHHHHHHHHhhhhhhhCC-chH
Confidence 9999999999999999999999999999985 56667778899985532 2345899999999999999999 599
Q ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCccccCCC--cCCCCcccccccccccCCCCCCcCCHHHHHHHhccCCC
Q 001056 232 QDARLYILSLQFWLGGSPDNLQNFLKMISGSYVPALRGQK--IEYADPVLFLDTGIWHPLAPCMYDDVKEYLNWYGTRKD 309 (1171)
Q Consensus 232 ~d~~~~~~~~~Y~~~Gg~eN~~nll~~l~~~y~~~~~g~~--~~~~~P~~~P~~GiyHP~~~~~f~~~~~Y~~Wy~~~~~ 309 (1171)
||+|+|+.+++||.+||.||++|||+||+.+|+ +.. ++++||+++|+.|||||+++.+|+|+.+|++||+++.+
T Consensus 158 ~d~r~~~~~~~Y~~~Gg~eN~~~ll~~l~~~~~----~~~~~~~~~~P~~~P~~GiyhP~~~~~f~~~~~y~~w~~~~~~ 233 (1216)
T TIGR02025 158 QDLRNWLLSYQYWLGGSPENVANMLRLLADKYF----DGEIGGKIDPPVEYPDIGLYHPDAKGFFETVKEYLAWYKKREG 233 (1216)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc----CCcccCCCCCCcccCCcccccCCcccccCCHHHHHHHHhhccc
Confidence 999999999999999999999999999999997 222 47899999999999999999999999999999976432
Q ss_pred cccccCCCCCCeEEEEeeccccccCCChHHHHHHHHHHHCCCcEEEEEecCCCCchhhhHhhccccCCCccceeeeeccc
Q 001056 310 TNEKLKGPDAPVIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISLTG 389 (1171)
Q Consensus 310 ~~~~~~~~~~p~Vgil~yrs~~~~g~~~~~daLI~~LE~~G~~vipvf~~gl~~~~~v~~~f~~~~~~~~~VDavIn~tg 389 (1171)
. +.+++|+|||+|||+|+++||++|+|+||++||++|+||+|||++|++.+.++++||.+....++.||+|||+||
T Consensus 234 ~----~~~~~p~Vgil~~r~~~~~~~~~~~dalI~~lE~~G~~vipvf~~gl~~~~~v~~~~~~~~~~~~~vdaiI~~~g 309 (1216)
T TIGR02025 234 C----RAPKAPRVGLLLLRKHLLTGNQAHYDNLIRELEAAGLQVVPAFSGGLDGRVAVEDFFMKDSTPSVKVDAVVSLTG 309 (1216)
T ss_pred c----cCCCCCEEEEEEchhhhhcCCcHHHHHHHHHHHHCCCcEEEEEecCccccHHHHHHHHhcccCCCCccEEEECCc
Confidence 1 245689999999999999999999999999999999999999999999989999999863235568999999999
Q ss_pred ccccCCCCCCCchhHHHHhhhCCCcEEeEecCCCCCHHHHhcCCCCCChhhhhhheeccccCcceeeEEEEEecCCCCcc
Q 001056 390 FALVGGPARQDHPRAIEALRKLDVPYIVALPLVFQTTEEWLNSTLGLHPIQVALQVALPELDGGLEPIVFAGRDPRTGKA 469 (1171)
Q Consensus 390 FsL~ggpa~~~~~~~~~~L~~LnVPvl~ai~l~~qt~eeW~~s~~GL~p~~~~~~ValPElDG~I~piv~~g~~~~~~~~ 469 (1171)
|+|+|||++++.++++++|++||||||+++++++||+++|++|++||+|+|++|+|+||||||+|+|++|||++..++.+
T Consensus 310 F~l~ggpa~~~~~~a~~~L~~lnVPvl~~~~l~~qt~~~W~~s~~Gl~p~~~~~~valPElDG~I~piv~~g~~~~~~~~ 389 (1216)
T TIGR02025 310 FSLVGGPAGSDAAAAVEILKGLDVPYIVAIPLLFQTIESWTASDLGLGPLQVALLVAIPELDGAIAPVILGGLVGGAGDA 389 (1216)
T ss_pred hhccCCCccccchhhHHHHHHCCCCEEEEEecCCCCHHHHHhCCCCCChHHhhheeechhhCCeeeeEEEEEEecCCCce
Confidence 99999999988888899999999999999999999999999999999999999999999999999999999998766789
Q ss_pred ccchHHHHHHHHHHHHHHHcccCCCCCceEEEEeecCCCCCCCccccCCCChHHHHHHHHHHHHHCCCCCCCCCCCHHHH
Q 001056 470 HALHKRVEQLCTRAIRWGELKRKTKAEKKLAITVFSFPPDKGNIGTAAYLNVFSSIFSVLKDLQRDGYNVEGLPETSEAL 549 (1171)
Q Consensus 470 ~pipeRi~~la~r~~~W~~LR~kpn~eKKVAIil~nyPp~~g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~vg~~P~~~~~L 549 (1171)
.||||||+++|+|+++|++||+|||+||||||||||||||++|||||+|||||+||++||++||++||+|+++|+|+++|
T Consensus 390 ~pi~eri~~la~r~~~w~~Lr~k~n~eKkvAIil~nyPpg~g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~v~~lP~~~~eL 469 (1216)
T TIGR02025 390 IPVQERLERLAGRVKRWVRLRKKPNAEKKVAIVLFNFPPGLGNVGTAAYLDVFESLYELLHRLKDEGYNVGELPESVEEL 469 (1216)
T ss_pred eeCHHHHHHHHHHHHHHHHHccCChhhCEEEEEecCCCCCCCcccccccCChHHHHHHHHHHHHHCCCCCCCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccccCCccccccccccHHHHhhhhHHHHHHHHHhCCCCCCCCCCCCeEEEeeeeeccEEEeeCCCCCCCCCc
Q 001056 550 IEEIIHDKEAQFSSPNLNIAYKMGVREYQSLTPYATALEENWGKPPGNLNSDGENLLVYGKQYGNVFIGVQPTFGYEGDP 629 (1171)
Q Consensus 550 ~~~il~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~i~~~WG~ppG~~~~~g~~~~I~G~~fGNVfIgvQP~RG~~~Dp 629 (1171)
+++|++++...+.....+++.++|+++|++|++.+++|+++||+|||++|++|++|+|||++||||||||||+|||++||
T Consensus 470 ~~~l~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~i~~~WG~~pG~~~~~g~~~~I~g~~fGNVfIgvQP~rG~~~d~ 549 (1216)
T TIGR02025 470 IEAVLEGNEEQYGSAKLNVAVRIPVEQYERLYPRTERIEEQWGSAPGELLTDGDELHIGGAQFGNVFIGVQPSFGYEGDP 549 (1216)
T ss_pred HHHHHhcCccccccccccccccCCHHHHHHHHHHHHHHHHHhCCCCCCcCCCCCeEEEEEEeECCEEEEeCCCcCcCCCc
Confidence 99999877655554435667789999999999999999999999999999999889999999999999999999999999
Q ss_pred cccccCCCCCCCchhHHHHHHHhhhcCccEEEEecCCCcCCCCCCCccCCCCCCccccccCCCCeeeEEecCCcchhhHH
Q 001056 630 MRLLFSKSASPHHGFAAYYSFVEKIFKADAVLHFGTHGSLEFMPGKQVGMSDVCYPDSLIGNIPNVYYYAANNPSEATIA 709 (1171)
Q Consensus 630 ~~lyHd~~lpP~HqYlAfY~WL~~~F~ADAviH~GtHGtLEwLPGK~vGLS~~cwPd~liGdlPniY~YivnnPgEg~~A 709 (1171)
|++|||+++||||||+|||+||+++|+||||||||||||||||||||+|||++||||+|||+|||||||||||||||+||
T Consensus 550 ~~l~h~~~~~P~HqY~AfY~WL~~~f~ADAviH~GtHGtlEwLPGK~~GLS~~cwPd~liG~lP~iY~Y~vnNpgEg~~A 629 (1216)
T TIGR02025 550 MRLLFERDATPHHQFAAFYRWLDRDFKADAVLHFGTHGSLEFMPGKQTGLTGECWPDRLLGDLPNFYIYAVNNPSEATIA 629 (1216)
T ss_pred hhhhcCCCCCCCchHHHHHHHHHhhcCCCEEEECCCCcCcccCCCccccCCcccChHHHhCCCCEEeEEeCCCcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccccCCCCCcCCCCchHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHcCCcccCCCCcccccCChHHHhH
Q 001056 710 KRRSYANTISYLTPPAENAGLYKGLKQLSELISSYQSLKDTGRGPQIVSSIISTAKQCNLDKDVELPDEGAEISAKERDL 789 (1171)
Q Consensus 710 KRR~~AviIsHLtPP~~~AgLY~~L~eL~~li~eY~~~~~~~~~~~l~~~I~~~a~~~~L~~dl~~~~~~~~~~~~~~d~ 789 (1171)
||||||||||||||||++||||++|++|+++|++|+++....++..+++.|+++|+++||++||++.. .+++++
T Consensus 630 KRR~~AviIsHLtPP~~~AgLY~~L~~L~~li~eY~~~~~~~~~~~l~~~I~~~a~~l~L~~dl~~~~------~~~~~~ 703 (1216)
T TIGR02025 630 KRRGYATLISYLTPPLERAGLYKGLRELKELIAEYRELPNAERGAQIVEAIMKKAVDLNLDTDCPRPP------QEPFED 703 (1216)
T ss_pred HhcccCEecCCCCCCccccCccHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHcCCchhcCCCC------cccHHH
Confidence 99999999999999999999999999999999999998766678899999999999999999987532 246888
Q ss_pred HHHHHHHHHHHHHhccCCCCceecccCCChHHHHHHHHHHHhcCCCcccccchhHHHHHHhCCChhhhhcCCCCCcccHH
Q 001056 790 VVGKVYSKIMEIESRLLPCGLHVIGEPPSALEAVATLVNIAALDRPEDEIASLPSILAETVGRDIEDIYRGSDKGILKDV 869 (1171)
Q Consensus 790 ~v~~l~~yL~el~~~~ip~GLHv~G~~p~~e~~~~~l~~~~~~~r~~~~~~sL~~~la~~~g~~~~~l~~~~~~~~~~~~ 869 (1171)
++++||+||||||+++||+||||||++|++|++++++.+|++.++++.+..+++.+ ++++.+...
T Consensus 704 ~l~~l~~yL~el~~~~ip~GLHv~G~~p~~e~l~~~l~~~~~~~~~~~~~~~l~~l---------~~~~~~~~~------ 768 (1216)
T TIGR02025 704 FVGRLYIYLTELENRLIPNGLHVLGEAPSAESLIDTLMEIASVDREELGSLSLPFL---------DEIGRNSHY------ 768 (1216)
T ss_pred HHHHHHHHHHHHHhhhcCCCCeecCCCCChHHHHHHHHHHhcccccccccccchhH---------HHHHhcccc------
Confidence 99999999999999999999999999999999999999999887765433333321 111100000
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCCchHHHHHHHHhhhccCCCchhhhhhcccccccccHHHHHHHHHHHHHHHhhhcc
Q 001056 870 ELLRQITEASRGAISAFVEKTTNKKGQVVDVADKLSSILGFGINEPWIQYLSNTKFYRADRATLRTLFEFVGECLKLVVA 949 (1171)
Q Consensus 870 ~ll~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 949 (1171)
+ .......++++..+...+.+
T Consensus 769 -------------------------~----------------------------------~~~~~~~l~~~~~~~~~l~~ 789 (1216)
T TIGR02025 769 -------------------------G----------------------------------SEEERESLQYLMMILALSDN 789 (1216)
T ss_pred -------------------------c----------------------------------hhhHHHHHHHHHHHHHhccC
Confidence 0 00011123444455555667
Q ss_pred chhHHHHHhhhCCCccCCCCCCCCCCCCCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCCceEEEE
Q 001056 950 DNELGSLKQALEGKYVEPGPGGDPIRNPKVLPTGKNIHALDPQAIPTTAAMQSAKVVVDRLIERQKVDNGGKYPETVALV 1029 (1171)
Q Consensus 950 ~~El~~LL~aL~G~YI~PgpgGdp~R~pdvLPTGRNfys~DP~~iPT~aAw~~G~~lA~~lL~~y~~e~~G~yPe~va~v 1029 (1171)
++|+++||+||+|+||+|||||||+|||+|||||||||+|||++|||++||++|+++|++||++|+++|+|+||||||+|
T Consensus 790 ~~El~~LL~aL~G~yI~PgpgGdp~R~p~vLPTGRN~ys~DP~~iPT~aA~~~G~~~A~~lL~~y~~~~~G~yPe~va~v 869 (1216)
T TIGR02025 790 DDEMNGLLRALEGEYIPPGPGGDLVRNPNVLPTGRNIHALDPYRIPSPAAVKRGTRIADKLLAQHRAENGGNYPETIAVV 869 (1216)
T ss_pred hHHHHHHHHHhCCceeCCCCCCCcccCCCCCCCCCcccCcCcccCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999878789999999999
Q ss_pred EEecccccccChhHHHHHHHhCCeeccCCCCCceeeEEecccccCCCceeEEEecCcchhhhHHHHHHHHHHHHHHHHcc
Q 001056 1030 LWGTDNIKTYGESLAQVLWMIGVRPVSDTFGRVNRVEPVSLEELGRPRIDVVVNCSGVFRDLFINQMNLLDRAVKMVAEL 1109 (1171)
Q Consensus 1030 LWgtdtmrt~Ge~iAqiL~LlGvrPvwd~~GrV~g~ElIPL~ELgRPRIDVvv~iSGiFRD~Fp~~i~LlD~Av~~aA~l 1109 (1171)
|||||||||+|++|||||||||||||||++|||+|+|||||+||||||||||||+||||||+|||||+|||+||++||++
T Consensus 870 LWgtdt~rt~Ge~iAqiL~LlGvrPvwd~~GrV~g~elIPL~eLgRPRIDVvv~iSGiFRD~fp~~i~LlD~Av~~aA~~ 949 (1216)
T TIGR02025 870 LWGTDNIKTKGESVAQALALMGAEPVPDALGRIVRYELIPLEKLGRPRIDVVVTLSGIFRDLFVNQMELLDRAVKLAADA 949 (1216)
T ss_pred EEehHhhhhCCHHHHHHHHHcCCccccCCCCCccceEEeCHHHcCCCCeeEEEEecchhHhhHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchHHHHHHHHHHHcCCCcccccccccCCCCCCchhchhhHhhcCCCCChhhhhhh
Q 001056 1110 DEPEEQNYVRKHALEQAKALGIDVREAATRVFSNASGSYSSNINLAVENSSWNDEKQLQTC 1170 (1171)
Q Consensus 1110 DEp~e~N~Vrkh~~~~~~~~G~~~~~A~~RIFg~~pG~YGagV~~lVes~~We~e~dLad~ 1170 (1171)
|||+|+||||||+++++++.|++.++|+.||||++||+||||||++|++|+|++++||||+
T Consensus 950 dEp~e~N~Vrkh~~~~~~~~G~~~~~A~~RIFg~~pG~YGagv~~lV~ss~We~~~eLad~ 1010 (1216)
T TIGR02025 950 DEPEEMNFVRKHALAQAAEGGIDVEEAAARIFSNAPGSYGSNVNDLVENSAWEDEGELADT 1010 (1216)
T ss_pred CCCcccCHHHHHHHHHHHhcCCChhhcccccccCCCCchhhhHHHHHhcCCCCCHHHHHHH
Confidence 9999999999999999889999999999999999999999999999999999999999996
No 4
>PRK13405 bchH magnesium chelatase subunit H; Provisional
Probab=100.00 E-value=2.5e-277 Score=2574.84 Aligned_cols=974 Identities=42% Similarity=0.734 Sum_probs=904.3
Q ss_pred ceeecCccccccccCCCCCCCcEEEEEEEcccchhHHHHHHHHHHHhhcCCceEEEEEeehhhccChhhHHHHHHHhhcC
Q 001056 55 LFTQTSPEVRRIVPENRDNLPTVKIVYVVLEAQYQSALSAAVQALNQQVNYASYEVVGYLVEELRDVDTYKTFCKDLENA 134 (1171)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a 134 (1171)
||+++++..| ++||||+||+++|+++++.+|++.|++++++++|+||+ +.+|+++++++++|++||++|
T Consensus 1 ~~~~~~~~~~----------~~~~~v~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~a 69 (1209)
T PRK13405 1 MPKRTSAADG----------TPVRVVIVTLDSHLAGAAARARPRLQRDFPGLTLSVHA-AAEWGEDPAALEACRADIATG 69 (1209)
T ss_pred CCcccccccC----------CceEEEEEechHHhhHHHHHHHHHHhhcCCCCcEEEEe-chhhhcChhhHHHHHHHHhhC
Confidence 5666666655 34999999999999999999999999999999999999 999999999999999999999
Q ss_pred CEEEEeccccHHHHHHHHHHHHHhhcccCEEEeccChhhHhhhcccCcccccccCCCCchhHHHHHhhhc--cCC--cHH
Q 001056 135 NIFIGSLIFVEELALKIKAAVEKERDRLDAVLVFPSMPEVMRLNKLGSFSMSQLGQSKSPFFQLFKKKKQ--GAG--FAD 210 (1171)
Q Consensus 135 d~~~~sllf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~v~~~t~lG~f~~~~~~~~~~~~~~~~~~~~~--~~~--~~~ 210 (1171)
||||+||||++||+++|.++|++++++||++|||+|+||+|++||||+|+|++ +++.+++++||.+. +.| ..+
T Consensus 70 d~~~~sl~f~~~~~~~~~~~l~~~~~~~~~~~~~~s~~e~~~ltr~G~f~m~~---~~~~~~~~~k~~~~~~~~~~~~~~ 146 (1209)
T PRK13405 70 DIVIATMLFMDEHIRAVLPALQARRDACDAMVGCMSAGEVVKLTRMGKFDMSG---PASGPLALLKKLRGKKKEGGSSGE 146 (1209)
T ss_pred CEEEeecccCHHHHHHHHHHHHHhhcCCCeEEEEcCcHHHHHHhcccceeccC---CcccchHHHHHhhhccCCCcchHH
Confidence 99999999999999999999999999999999999999999999999999973 44556888888542 233 348
Q ss_pred HHHHHHHhCCCeeEEcCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCcccc---CCCcCCCCccccccccccc
Q 001056 211 SMLKLVRTLPKVLKYLPSDKAQDARLYILSLQFWLGGSPDNLQNFLKMISGSYVPALR---GQKIEYADPVLFLDTGIWH 287 (1171)
Q Consensus 211 ~~~~~~~~~~~~l~~lPg~~~~d~~~~~~~~~Y~~~Gg~eN~~nll~~l~~~y~~~~~---g~~~~~~~P~~~P~~GiyH 287 (1171)
+|++++|++||+|+||| +|+||+|+|++++|||.+||.||++|||+||+.+|+.... ...+++++|+++|+.||||
T Consensus 147 ~~~~~~~~~pk~l~~iP-~ka~d~r~~~~~~~Yw~~Gg~eN~~nll~~l~~~~~~~~~~~~~~~~~~~~P~~~P~~Giyh 225 (1209)
T PRK13405 147 GQMAMLRRLPKILRFIP-GTAQDVRAYFLTLQYWLAGSDENVANMVRFLVDRYAAGPRAALRGIAKAAAPIEYPEVGLYH 225 (1209)
T ss_pred HHHHHHHHHHHHhhhCc-hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHccCcccccccCCCCCCchhcccceeEC
Confidence 99999999999999999 5999999999999999999999999999999999973110 1125689999999999999
Q ss_pred CCCCC-CcCCHHHHHHHhccCCCcccccCCCCCCeEEEEeeccccccCCChHHHHHHHHHHHCCCcEEEEEecCCCCchh
Q 001056 288 PLAPC-MYDDVKEYLNWYGTRKDTNEKLKGPDAPVIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFAGP 366 (1171)
Q Consensus 288 P~~~~-~f~~~~~Y~~Wy~~~~~~~~~~~~~~~p~Vgil~yrs~~~~g~~~~~daLI~~LE~~G~~vipvf~~gl~~~~~ 366 (1171)
|+++. +|++..+|.+| .+++|+|||+|||+|+++||++|+|+||++||++|+||||||++|++.+.+
T Consensus 226 P~~~~~~~~~~~~~~~~------------~~~~p~Vgil~~r~~~~~~d~~~~d~lI~~lE~~G~~vipvf~~gl~~~~~ 293 (1209)
T PRK13405 226 PRMPGRITEDLDDLPRP------------AGAKGTVGLLLMRSYVLAGNTAHYDGVIEALEARGLRVVPAFASGLDGRPA 293 (1209)
T ss_pred CCCcccccccHHHHhhc------------ccCCCeEEEEEehhhhhcCCcHHHHHHHHHHHHCCCeEEEEEecCccchHH
Confidence 99875 67888888765 234799999999999999999999999999999999999999999999889
Q ss_pred hhHhhccccCCCccceeeeecccccccCCCCCCCchhHHHHhhhCCCcEEeEecCCCCCHHHHhcCCCCCChhhhhhhee
Q 001056 367 VERFFVDPVMKKPMVNSAISLTGFALVGGPARQDHPRAIEALRKLDVPYIVALPLVFQTTEEWLNSTLGLHPIQVALQVA 446 (1171)
Q Consensus 367 v~~~f~~~~~~~~~VDavIn~tgFsL~ggpa~~~~~~~~~~L~~LnVPvl~ai~l~~qt~eeW~~s~~GL~p~~~~~~Va 446 (1171)
+++||.+ ++++.||+|||+|||+|+|||++++.++++++|++||||||+++++++||+++|++|++||+|+|++|+|+
T Consensus 294 v~~~~~~--~~~~~vDaiI~~tgF~l~ggpa~~~~~~a~~~L~~lnVPvl~~~~l~~qt~~~W~~s~~Gl~p~~~~~~Va 371 (1209)
T PRK13405 294 IEAYFMK--DGRPTVDAVVSLTGFSLVGGPAYNDSAAAEEILARLDVPYLAAHPLEFQTLEQWAASDRGLGPVEATMMVA 371 (1209)
T ss_pred HHHHHhc--cCCCCccEEEEcCcccccCCcccCcchhHHHHHHHCCCCEEEEeecCCCCHHHHHhCCCCCCHHHHhHhee
Confidence 9999976 57789999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred ccccCcceeeEEEEEecCC-----------------CCccccchHHHHHHHHHHHHHHHcccCCCCCceEEEEeecCCCC
Q 001056 447 LPELDGGLEPIVFAGRDPR-----------------TGKAHALHKRVEQLCTRAIRWGELKRKTKAEKKLAITVFSFPPD 509 (1171)
Q Consensus 447 lPElDG~I~piv~~g~~~~-----------------~~~~~pipeRi~~la~r~~~W~~LR~kpn~eKKVAIil~nyPp~ 509 (1171)
||||||+|+|++|||++.. +..+.|+||||+++|+|+++|++||+|||+||||||||||||||
T Consensus 372 lPElDG~i~piv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~pi~eri~~la~r~~~w~~Lr~k~n~eKkvAIil~nyPpg 451 (1209)
T PRK13405 372 IPELDGATGPMVFGGRSDGVACTGCDRGCKFSGNDAARDMAVCPERAEMLAARVARLVALRRSERAERKVAVVLFNFPPN 451 (1209)
T ss_pred chhhcCcceeEEEEEEecccccccccccccccccccccceeeCHHHHHHHHHHHHHHHHHccCChhhCEEEEEecCCCCC
Confidence 9999999999999998642 13678999999999999999999999999999999999999999
Q ss_pred CCCccccCCCChHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHhccccccCCccccccccccHHHHhhhhHHHHHHHH
Q 001056 510 KGNIGTAAYLNVFSSIFSVLKDLQRDGYNVEGLPETSEALIEEIIHDKEAQFSSPNLNIAYKMGVREYQSLTPYATALEE 589 (1171)
Q Consensus 510 ~g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~vg~~P~~~~~L~~~il~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~i~~ 589 (1171)
++|+|||+|||||+||++||++||++||+| ++|+|+++|+++|++++...|.++ .+++..+|+++|.+|++++++|++
T Consensus 452 ~~~iGtAa~LDv~~Sl~~iL~~Lk~~GY~v-~~P~~~~eL~~~l~~g~~~~~~~~-~~~~~~~~~~~Y~~~~~~~~~i~~ 529 (1209)
T PRK13405 452 AGATGTAAYLSVFESLFNTLRAMKAEGYTV-EVPESVDALREAILGGNAARYGTP-ANVHARVPADDHVRREPWLAEIEA 529 (1209)
T ss_pred CCccccccccChHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHhCCCCCCCCc-hhhhccCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 699999999999998877777654 355678999999999999999999
Q ss_pred HhCCCCCCCCCCCCeEEEeeeeeccEEEeeCCCCCCCCCccccccCCCCCCCchhHHHHHHHhhhcCccEEEEecCCCcC
Q 001056 590 NWGKPPGNLNSDGENLLVYGKQYGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYSFVEKIFKADAVLHFGTHGSL 669 (1171)
Q Consensus 590 ~WG~ppG~~~~~g~~~~I~G~~fGNVfIgvQP~RG~~~Dp~~lyHd~~lpP~HqYlAfY~WL~~~F~ADAviH~GtHGtL 669 (1171)
+||+|||++|++|++|+|||++||||||||||+|||++|||++|||+++||||||+|||+||+++|+|||||||||||||
T Consensus 530 ~WG~~pG~~~~~g~~~~I~g~~fGNVfig~QP~rG~~~d~~~l~hd~~~pP~HqYlAfY~WL~~~F~ADAviH~GtHGtl 609 (1209)
T PRK13405 530 QWGPAPGRHQSDGRSIFVLGAQFGNVFVGVQPAFGYEGDPMRLLFEKGFAPTHAFSAFYRWLREDFGADAVLHFGTHGAL 609 (1209)
T ss_pred HcCCCCCCcCCCCCeEEEeeeeECCEEEEeCCCCCcCCCchhhhcCCCCCCCchHHHHHHHHHhhcCCCEEEECCCCccc
Confidence 99999999999998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccCCCCCCccccccCCCCeeeEEecCCcchhhHHhhhccccccccCCCCCcCCCCchHHHHHHHHHHHHHhcc-
Q 001056 670 EFMPGKQVGMSDVCYPDSLIGNIPNVYYYAANNPSEATIAKRRSYANTISYLTPPAENAGLYKGLKQLSELISSYQSLK- 748 (1171)
Q Consensus 670 EwLPGK~vGLS~~cwPd~liGdlPniY~YivnnPgEg~~AKRR~~AviIsHLtPP~~~AgLY~~L~eL~~li~eY~~~~- 748 (1171)
|||||||+|||++||||+|||+|||||||||||||||+||||||+||||||||||+++||||++|++|+++|++|+++.
T Consensus 610 EwLPGK~vGLS~~cwPd~liGdlP~iY~Y~vnNpgEg~~AKRR~~AviIsHLtPP~~~AgLY~~L~~L~~li~eY~~~~~ 689 (1209)
T PRK13405 610 EFMPGKQAGLSAACWPDRLIGDLPNVYLYAANNPSEGTLAKRRSAATLISYLTPPLAAAGLYRGLLDLKASLERWRGLPP 689 (1209)
T ss_pred ccCCCccccCCcccChHHHhCCCCEEEEEecCCcchHHHHHhcccCEecCCCCCCCcccCCcHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred -CCCCchHHHHHHHHHHHHcCCcccCCCCcccccCChHHHhHHHHHHHHHHHHHHhccCCCCceecccCCChHHHHHHHH
Q 001056 749 -DTGRGPQIVSSIISTAKQCNLDKDVELPDEGAEISAKERDLVVGKVYSKIMEIESRLLPCGLHVIGEPPSALEAVATLV 827 (1171)
Q Consensus 749 -~~~~~~~l~~~I~~~a~~~~L~~dl~~~~~~~~~~~~~~d~~v~~l~~yL~el~~~~ip~GLHv~G~~p~~e~~~~~l~ 827 (1171)
++.++..+++.|++++.++||+.|++.. .+++++++++||+||||||+++||+||||||++|++|+++++|.
T Consensus 690 ~~~~~~~~l~~~I~~~a~~~~L~~d~~~~-------~~~~~~~l~~L~~yL~el~~~~ip~GLHv~G~~p~~e~l~~~l~ 762 (1209)
T PRK13405 690 DATEERAELAALIQAQAAAVDLAPAEPAW-------EEEAGARIAKLWAALLELEYTLIPHGLHVVGEPPSEEERVDLLL 762 (1209)
T ss_pred cChhHHHHHHHHHHHHHHHcCCCcccCcc-------cccHHHHHHHHHHHHHHHHhcccCCCCeecCCCCChHHHHHHHH
Confidence 3445779999999999999999887531 24688899999999999999999999999999999999999998
Q ss_pred HHHhcCCCcccccchhHHHHHHhCCChhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhhccccCCchHHHHHHHHhh
Q 001056 828 NIAALDRPEDEIASLPSILAETVGRDIEDIYRGSDKGILKDVELLRQITEASRGAISAFVEKTTNKKGQVVDVADKLSSI 907 (1171)
Q Consensus 828 ~~~~~~r~~~~~~sL~~~la~~~g~~~~~l~~~~~~~~~~~~~ll~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~a~~ 907 (1171)
+|++.+.. .. +.
T Consensus 763 ~~~~~~~~-----------------------------~~--------------~~------------------------- 774 (1209)
T PRK13405 763 AMAEASHG-----------------------------KR--------------AE------------------------- 774 (1209)
T ss_pred HHhcCccc-----------------------------hH--------------HH-------------------------
Confidence 87643210 00 00
Q ss_pred hccCCCchhhhhhcccccccccHHHHHHHHHHHHHHHhhhccchhHHHHHhhhCCCccCCCCCCCCCCCCCCCCCCCccc
Q 001056 908 LGFGINEPWIQYLSNTKFYRADRATLRTLFEFVGECLKLVVADNELGSLKQALEGKYVEPGPGGDPIRNPKVLPTGKNIH 987 (1171)
Q Consensus 908 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~El~~LL~aL~G~YI~PgpgGdp~R~pdvLPTGRNfy 987 (1171)
+.+++.+++|+++||+||+|+||+|||||||+|||+|||||||||
T Consensus 775 -----------------------------------~~~l~~~~~El~~LL~aL~G~yI~PgpgGdp~R~pdvLPTGRN~y 819 (1209)
T PRK13405 775 -----------------------------------IDRLLAEDHELPALLRALDGRFIRPVPGGDLLRTPAILPTGRNLH 819 (1209)
T ss_pred -----------------------------------HHHhhhchHHHHHHHHHhCCcccCCCCCCCcccCCCCCCCCCccc
Confidence 001123468999999999999999999999999999999999999
Q ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCCceEEEEEEecccccccChhHHHHHHHhCCeeccCCCCCceeeEE
Q 001056 988 ALDPQAIPTTAAMQSAKVVVDRLIERQKVDNGGKYPETVALVLWGTDNIKTYGESLAQVLWMIGVRPVSDTFGRVNRVEP 1067 (1171)
Q Consensus 988 s~DP~~iPT~aAw~~G~~lA~~lL~~y~~e~~G~yPe~va~vLWgtdtmrt~Ge~iAqiL~LlGvrPvwd~~GrV~g~El 1067 (1171)
+|||++|||++||++|+++|++||++|+ ++||+||||||+||||||||||+|++|||||||||||||||++|||+|+||
T Consensus 820 s~DP~~iPT~~A~~~G~~~A~~lL~~y~-~e~G~yPe~va~vLWgtdt~rt~Ge~iAqiL~LlGvrPvwd~~GrV~g~el 898 (1209)
T PRK13405 820 GFDPFRIPSAFALQDGARQAARLLERHA-AEGNPLPESVALVLWGTDNLKSEGGPIAQALALMGARPRFDSYGRLAGAEL 898 (1209)
T ss_pred CcCcccCCCHHHHHHHHHHHHHHHHHHH-HhcCCCCceEEEEEEehHhhhhCCHHHHHHHHHcCCCcccCCCCCCCceEE
Confidence 9999999999999999999999999996 567999999999999999999999999999999999999999999999999
Q ss_pred ecccccCCCceeEEEecCcchhhhHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHcCCCcccccccccCCCCCC
Q 001056 1068 VSLEELGRPRIDVVVNCSGVFRDLFINQMNLLDRAVKMVAELDEPEEQNYVRKHALEQAKALGIDVREAATRVFSNASGS 1147 (1171)
Q Consensus 1068 IPL~ELgRPRIDVvv~iSGiFRD~Fp~~i~LlD~Av~~aA~lDEp~e~N~Vrkh~~~~~~~~G~~~~~A~~RIFg~~pG~ 1147 (1171)
|||+||||||||||||+||||||+|||||+|||+||++||++|||+|+||||||++++.+++|++.++|+.||||++||+
T Consensus 899 IPl~eLGRPRIDVvv~iSGiFRD~fp~~i~LlD~Av~~aA~~dEp~e~N~Vrkh~~~~~~~~G~~~~~A~~RIFg~~pG~ 978 (1209)
T PRK13405 899 IPLEELGRPRIDVVMTLSGIFRDLLPLQTKLLAEAAFLAASADEPLEQNFVRKHALAYQAEHGCDMETASLRVFSNAEGA 978 (1209)
T ss_pred eCHHHcCCCCeeEEEEecchHHhhHHHHHHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHhcCCChhhcCcceecCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred chhchhhHhhcCCCCChhhhhhh
Q 001056 1148 YSSNINLAVENSSWNDEKQLQTC 1170 (1171)
Q Consensus 1148 YGagV~~lVes~~We~e~dLad~ 1170 (1171)
||||||++|++|+|++++||||+
T Consensus 979 YGagv~~lV~s~~We~e~eLa~~ 1001 (1209)
T PRK13405 979 YGSNVNHLVDSGRWEDEDELADT 1001 (1209)
T ss_pred hhhhHHHHHhcCCCCCHHHHHHH
Confidence 99999999999999999999996
No 5
>PLN03241 magnesium chelatase subunit H; Provisional
Probab=100.00 E-value=2.2e-248 Score=2328.61 Aligned_cols=980 Identities=32% Similarity=0.550 Sum_probs=843.1
Q ss_pred cccCCCCCCCcEEEEEEEcccchhHHHHHHHHHHHhhcCCceEEEEEeehhhccChhhHHHHHHHhhcCCEEEEeccccH
Q 001056 66 IVPENRDNLPTVKIVYVVLEAQYQSALSAAVQALNQQVNYASYEVVGYLVEELRDVDTYKTFCKDLENANIFIGSLIFVE 145 (1171)
Q Consensus 66 ~~~~~~~~~~~~~~v~v~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ad~~~~sllf~~ 145 (1171)
.-|...+....||||+|+++.++++++.++++. +.+.+.+.++|+.|++++++++ +++|++||++|||||+||||++
T Consensus 58 ~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~a~~-~~~~~~~~l~l~~~~~~~~~~~--~~~~~~ai~~ad~~~~sl~f~~ 134 (1353)
T PLN03241 58 PQPKKHNTARTRRIVLVSGFESFNVGLYKQAAR-LLKRRCPNVDLVVFSDRDIESD--RERFAAALDGADVFFGSLLFDY 134 (1353)
T ss_pred CCCccccCCCceEEEEEEchhhhhHHHHHHHHH-hccCCCCceEEEEeehhhhccC--HHHHHHHHhcCCEEEEeccCcH
Confidence 345666667779999999999999999998888 5666667899999999999975 9999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCEEEeccChhhHhhhcccCccccccc-CCCCchhHHHHHhhh--ccCCcH----HHHHHHHHh
Q 001056 146 ELALKIKAAVEKERDRLDAVLVFPSMPEVMRLNKLGSFSMSQL-GQSKSPFFQLFKKKK--QGAGFA----DSMLKLVRT 218 (1171)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~v~~~t~lG~f~~~~~-~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~ 218 (1171)
|+++|++++|+ +||++|||+|+||||++||||+|+|+++ +++++.++.++||.+ .+.|+. ++||+++|+
T Consensus 135 ~~~~~~~~~l~----~~~~~~~~~s~~e~m~ltr~G~f~m~~~~~~~~~g~~~~~k~~~~~~~~g~~~~~~~~~~~~~~~ 210 (1353)
T PLN03241 135 DQVEWLRARLE----KVPPRLVFESALELMSCNSVGSFSMKAAPGGKKAGPPPAVKAVLSKFGSGKEEDKLVGYLSFLKI 210 (1353)
T ss_pred HHHHHHHHHHh----cCCeEEEecChHHHHhhhcccceecccccCCCcccchHHHHHHHhhcCCCcchhhHHHHHHHHHh
Confidence 99999999996 8999999999999999999999999865 556666788999854 233433 577999999
Q ss_pred CCCeeEEcCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCcccc---CCCcCCCCcccccccccccCCCCC---
Q 001056 219 LPKVLKYLPSDKAQDARLYILSLQFWLGGSPDNLQNFLKMISGSYVPALR---GQKIEYADPVLFLDTGIWHPLAPC--- 292 (1171)
Q Consensus 219 ~~~~l~~lPg~~~~d~~~~~~~~~Y~~~Gg~eN~~nll~~l~~~y~~~~~---g~~~~~~~P~~~P~~GiyHP~~~~--- 292 (1171)
+||+||||||+|+||+|+|+.+++||.+||.+|++|||+||+++|+.... +..+.+++|+++|+.|||||+++.
T Consensus 211 ~pk~lk~iP~~ka~D~r~~~~~~~Yw~~Gg~eN~~nll~~L~~~y~~~~~~~~~~~~~~~~P~~~P~~GiYHPd~~~~~~ 290 (1353)
T PLN03241 211 GPALLKFVPGEKASDLRNWLTVYRYWNQGGKENVEEAFAYIADQYLAPPSTVTPPSYAPPPLVETPALGLYHPDRERQQA 290 (1353)
T ss_pred hhhhhccCCchhHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccccccccccCCCCCCchhcCCceeECCCCccccc
Confidence 99999999999999999999999999999999999999999999973211 013578999999999999999874
Q ss_pred -CcCCHHHHHHHhccCCCcccccCCCCCCeEEEEeeccccccCCChHHHHHHHHHHHCCCcEEEEEecCCCCchhhhHhh
Q 001056 293 -MYDDVKEYLNWYGTRKDTNEKLKGPDAPVIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFF 371 (1171)
Q Consensus 293 -~f~~~~~Y~~Wy~~~~~~~~~~~~~~~p~Vgil~yrs~~~~g~~~~~daLI~~LE~~G~~vipvf~~gl~~~~~v~~~f 371 (1171)
+|++..+|++||.++... ..+++++|+|||+|||+|+++ +++|+|+||++||++|++|||||++|++.+.+|++||
T Consensus 291 ~~f~~~~~yl~wy~~~~~~--~~~~~~~p~Vgil~yrs~~~~-~~~~idalI~~LE~~G~~vipvf~~gl~~~~~v~~~~ 367 (1353)
T PLN03241 291 PYFESPAEYLEWYARQGAF--VLAPADAPRVAILLYRKHVIT-KQPYLADLVRQMEESGVLPVPIFINGVEAHTIVRDLL 367 (1353)
T ss_pred ccccCHHHHHHHHhhcccc--cccCCCCCEEEEEecchhhhc-CChHHHHHHHHHHHCCCeEEEEEecCccccchhHHhh
Confidence 799999999999754321 123467899999999999998 5899999999999999999999999999999999998
Q ss_pred cccc------------------CCCccceeeeecccccccCCCCCCCc-----hhHHHHhhhCCCcEEeEecCCCCCHHH
Q 001056 372 VDPV------------------MKKPMVNSAISLTGFALVGGPARQDH-----PRAIEALRKLDVPYIVALPLVFQTTEE 428 (1171)
Q Consensus 372 ~~~~------------------~~~~~VDavIn~tgFsL~ggpa~~~~-----~~~~~~L~~LnVPvl~ai~l~~qt~ee 428 (1171)
.+.. .+++.||+|||+|||+|+|||++++. +.++++|++|||||||++++++||+++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vDaiIn~tgFsLvgGpa~~~~~~~~~e~a~~~L~~lnVPvl~a~~l~~qt~~e 447 (1353)
T PLN03241 368 TSVHEQDLRARGELGRDSTYLKSDAVVVDAVVSTIGFPLVGGPAGSMEAGRQAEVAQTILGAKNVPYVVAAPLLIQDIAS 447 (1353)
T ss_pred hcchhhhhhhhccccchhhhcccCCCCccEEEeCCcccccCCcccCccccccchhHHHHHHhCCCCEEEeeccCCCCHHH
Confidence 6520 35678999999999999999997642 347899999999999999999999999
Q ss_pred HhcCCCCCChhhhhhheeccccCcceeeEEEEEecCCCCccccchHHHHHHHHHHHHHHHcccCCCCCceEEEEeecCCC
Q 001056 429 WLNSTLGLHPIQVALQVALPELDGGLEPIVFAGRDPRTGKAHALHKRVEQLCTRAIRWGELKRKTKAEKKLAITVFSFPP 508 (1171)
Q Consensus 429 W~~s~~GL~p~~~~~~ValPElDG~I~piv~~g~~~~~~~~~pipeRi~~la~r~~~W~~LR~kpn~eKKVAIil~nyPp 508 (1171)
|++| ||+|+|++|+|+||||||+|+|++|||++.. .+.|+||||+++|+|+++|++||+|||+|||||||||||||
T Consensus 448 W~~s--Gl~p~~~~~~valPElDG~I~piv~~g~~~~--~~~pi~eRi~~la~r~~~w~~LR~k~n~eKKVAIil~nyPp 523 (1353)
T PLN03241 448 WKRS--GVGGLQSVVLYSLPELDGAIDTVPLGGLVGD--DIYLVPERVRKLANRLKSWVSLRKTPPSERKVAVMLYGFPP 523 (1353)
T ss_pred HHHc--CCCHHHHHHhhccccccCeeeeEEEEEeccC--CcccCHHHHHHHHHHHHHHHHHccCChhhCEEEEEecCCCC
Confidence 9998 9999999999999999999999999998653 57999999999999999999999999999999999999999
Q ss_pred CCCCccccCCCChHHHHHHHHHHHHHCCCCCCC-----CCCCHHHHHHHHHh--ccc---c-------------------
Q 001056 509 DKGNIGTAAYLNVFSSIFSVLKDLQRDGYNVEG-----LPETSEALIEEIIH--DKE---A------------------- 559 (1171)
Q Consensus 509 ~~g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~vg~-----~P~~~~~L~~~il~--~~~---~------------------- 559 (1171)
++||+|||+|||||+||++||++||++||+|++ +| ++++|++.|+. ++. .
T Consensus 524 ~~g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~v~~~~~~~~P-~~~eL~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 602 (1353)
T PLN03241 524 GVGATGTAALLNVPKSLENLLRRLRDEGYDLGDSGTDPNP-SGESLVAALRTLEENPVIAGGATRMQTAIEHPRTRAHDG 602 (1353)
T ss_pred CCCcceeecccCcHHHHHHHHHHHHHcCCCcCCCcCCCCC-CHHHHHHHHHHhhcccccccccccccchhhhhhcccccc
Confidence 999999999999999999999999999999975 78 68999999873 222 1
Q ss_pred ccCCcc---------ccccccccHHHHhhhhH--HHHHHHHHhCCCCCCCCCCCCeEEEeeeeeccEEEeeCCCCCCCCC
Q 001056 560 QFSSPN---------LNIAYKMGVREYQSLTP--YATALEENWGKPPGNLNSDGENLLVYGKQYGNVFIGVQPTFGYEGD 628 (1171)
Q Consensus 560 ~~~~~~---------~~~~~~~~~~~Y~~~~~--~~~~i~~~WG~ppG~~~~~g~~~~I~G~~fGNVfIgvQP~RG~~~D 628 (1171)
+|.+.+ .+++..+|+++|++|++ ++++|+++||+|||+.+.+ ||.||+.
T Consensus 603 ~~~~~~~~~~~~g~~~~~~~~l~~~~Y~~w~p~~~~~~ie~~WG~~pg~~~~~------------------~p~rg~~-- 662 (1353)
T PLN03241 603 DATVRHTLAPPLGGAQVVGKDISIDHLEEMLGDVLVKKMERAWGELERYPGLN------------------TPGKGSF-- 662 (1353)
T ss_pred ccccchhccccccccccccccCCHHHHHHHcCHHHHHHHHHHhCCCCCCCCCc------------------CCCCCcc--
Confidence 121111 13466799999999986 4999999999999986532 5888874
Q ss_pred ccccccCCCCCCCchhHHHHHHHhhhcCccEEEEecCCCcCCCCCCCccCCCCCCccccccCCCCeeeEEecCCcchhhH
Q 001056 629 PMRLLFSKSASPHHGFAAYYSFVEKIFKADAVLHFGTHGSLEFMPGKQVGMSDVCYPDSLIGNIPNVYYYAANNPSEATI 708 (1171)
Q Consensus 629 p~~lyHd~~lpP~HqYlAfY~WL~~~F~ADAviH~GtHGtLEwLPGK~vGLS~~cwPd~liGdlPniY~YivnnPgEg~~ 708 (1171)
++|+||||||||||||||||||||+|||+.||||+|||+|||||||||||||||+|
T Consensus 663 ------------------------~~F~ADAvIHfGtHGtLEwLPGK~vGLS~~cwPd~LiGdlPniY~YivnNPgEg~~ 718 (1353)
T PLN03241 663 ------------------------DGYGADAVIHFGMHGTVEWLPGQPLGNDRLSWSDELLGGLPNVYVYAANNPSESIV 718 (1353)
T ss_pred ------------------------cccCCCeEEEccCCcCcccCCCccccCCcccChHHHhCCCCEEEEEecCCcchhHH
Confidence 89999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccccccccCCCCCcCCCCchHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHcCCcccCCCCccc---------
Q 001056 709 AKRRSYANTISYLTPPAENAGLYKGLKQLSELISSYQSLKDTGRGPQIVSSIISTAKQCNLDKDVELPDEG--------- 779 (1171)
Q Consensus 709 AKRR~~AviIsHLtPP~~~AgLY~~L~eL~~li~eY~~~~~~~~~~~l~~~I~~~a~~~~L~~dl~~~~~~--------- 779 (1171)
|||||||||||||||||++||||++|++|++||++|+++.... ...+++.|+++++++||+.||+++...
T Consensus 719 AKRR~~AviIsHLtPP~~~AgLY~~L~eL~~li~eY~~~~~~~-~~~l~~~I~~~a~~~~L~~dl~~~~~~~~~~~~~~~ 797 (1353)
T PLN03241 719 AKRRGYGTIVSHNVPPYGRAGLYLQLANLKELLNEYREDEETN-SAALRESIFDLVTRAGLDSDCPLVDASSSEGSRITS 797 (1353)
T ss_pred HHhhccceecccCCCCCccccCcHHHHHHHHHHHHHHhccccC-HHHHHHHHHHHHHHcCCchhcCcccccccccccccc
Confidence 9999999999999999999999999999999999999976543 368999999999999999999864210
Q ss_pred -----ccCChHHHhHHHHHHHHHHHHHHhccCCCCceecccCCChHHHHHHHHHHHhcCCCcccccchhHHHHHHhCCCh
Q 001056 780 -----AEISAKERDLVVGKVYSKIMEIESRLLPCGLHVIGEPPSALEAVATLVNIAALDRPEDEIASLPSILAETVGRDI 854 (1171)
Q Consensus 780 -----~~~~~~~~d~~v~~l~~yL~el~~~~ip~GLHv~G~~p~~e~~~~~l~~~~~~~r~~~~~~sL~~~la~~~g~~~ 854 (1171)
..++.++|++++.+||+||||||+++||+||||||++|++|+++++|.+|++..-..
T Consensus 798 ~~~~~~~~~~~~~~~~l~~L~~yL~el~~~~ip~GLHV~G~~p~~e~l~~~l~a~~~~~~~~------------------ 859 (1353)
T PLN03241 798 ESVELRSLSAEVFDDYASRLYAYLGVLENRLFSEGLHVLGAAPTDEQLGSYLAAYFGERLSE------------------ 859 (1353)
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHhhhcCCCCcccCCCCChHHHHHHHHHHhccccch------------------
Confidence 112345789999999999999999999999999999999999999999886431100
Q ss_pred hhhhcCCCCCcccHHHHHHHHHHH-HHHHHHHHHhhccccCCchHHHHHHHHhhhccCCCchhhhhhcccccccccHHHH
Q 001056 855 EDIYRGSDKGILKDVELLRQITEA-SRGAISAFVEKTTNKKGQVVDVADKLSSILGFGINEPWIQYLSNTKFYRADRATL 933 (1171)
Q Consensus 855 ~~l~~~~~~~~~~~~~ll~~i~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 933 (1171)
+.++++... ....+..+.+. +.. ......+ . ......+
T Consensus 860 ---------------~~~~~i~~~~~~~~~~~~~~~--------------~~~--~~~~~~~--~--------~~~~~~~ 898 (1353)
T PLN03241 860 ---------------DEIRAVASQNVFTSLFQFLES--------------VAF--QRYRDLP--N--------CPTSSQT 898 (1353)
T ss_pred ---------------HHHHHHHHHhhhhhHHHHHHH--------------hhh--hcccccc--c--------cchhHHH
Confidence 001111000 00000000000 000 0000000 0 0001111
Q ss_pred HHHHHHHHHHHhhhccchhHHHHHhhhCCCccCCCCCCCCCCC-CCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHHH
Q 001056 934 RTLFEFVGECLKLVVADNELGSLKQALEGKYVEPGPGGDPIRN-PKVLPTGKNIHALDPQAIPTTAAMQSAKVVVDRLIE 1012 (1171)
Q Consensus 934 ~~~~~~l~~~~~~~~~~~El~~LL~aL~G~YI~PgpgGdp~R~-pdvLPTGRNfys~DP~~iPT~aAw~~G~~lA~~lL~ 1012 (1171)
....+ -+..+..+++|+++||+||+|+||+|||||||+|| |+|||||||||+|||++|||++||++|+++|++||+
T Consensus 899 ~~~~~---~~~~l~~~~~El~~LL~AL~G~yI~PgpgGdp~R~~pdvLPTGRN~ya~DP~~iPT~aAw~~G~~lA~~lLe 975 (1353)
T PLN03241 899 QEAVE---IRDLLSRNTEELSGVLKALGGEYVPPAPGGDLLRDGPGVLPTGRNIHALDPYRMPSAAAWARGARVAAAIIE 975 (1353)
T ss_pred HHHHH---HHHHhhcChHHHHHHHHHhCCceeCCCCCCCcccCCCCcCCCCCcccccCcccCCCHHHHHHHHHHHHHHHH
Confidence 11111 12233456799999999999999999999999998 999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCceEEEEEEecccccccChhHHHHHHHhCCeeccCCCCCceeeEEecccccCCCceeEEEecCcchhhhH
Q 001056 1013 RQKVDNGGKYPETVALVLWGTDNIKTYGESLAQVLWMIGVRPVSDTFGRVNRVEPVSLEELGRPRIDVVVNCSGVFRDLF 1092 (1171)
Q Consensus 1013 ~y~~e~~G~yPe~va~vLWgtdtmrt~Ge~iAqiL~LlGvrPvwd~~GrV~g~ElIPL~ELgRPRIDVvv~iSGiFRD~F 1092 (1171)
+|+++|||+|||||||||||||||||+|++|||||||||||||||++|||+|+|||||+||||||||||||+||||||+|
T Consensus 976 ~y~~~~~G~yPe~Va~vLWgtdtmrt~Ge~iAqiL~LlGvrPvwd~~GRV~g~ElIPLeELGRPRIDVvv~iSGiFRD~F 1055 (1353)
T PLN03241 976 QHRAANDGAYPETVAVNLWGLDAIKTKGESVAIVLALVGARPVKEGTGRVVRYELIPLSELGRPRVDVLCNMSGIFRDSF 1055 (1353)
T ss_pred HHHHHhCCCCCceeEEEEEchHhhhhCCHHHHHHHHHcCCccccCCCCcccceEEecHHHcCCCCeeEEEEecchhHhhH
Confidence 99878789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHcCCCcccccccccCCCCCCchhchhhHhhcCCCCChhhhhhh
Q 001056 1093 INQMNLLDRAVKMVAELDEPEEQNYVRKHALEQAKALGIDVREAATRVFSNASGSYSSNINLAVENSSWNDEKQLQTC 1170 (1171)
Q Consensus 1093 p~~i~LlD~Av~~aA~lDEp~e~N~Vrkh~~~~~~~~G~~~~~A~~RIFg~~pG~YGagV~~lVes~~We~e~dLad~ 1170 (1171)
||||+|||+||++||++|||+|+||||||++++. +.|++ +|++||||++||+||+|||++|++|+|++++||||+
T Consensus 1056 p~~i~LlD~Av~laA~~DEp~e~N~Vrkh~~~~~-~~G~~--~a~~RIFg~~pG~YGagV~~lV~ss~We~e~eLad~ 1130 (1353)
T PLN03241 1056 ANVVDLLDDLFARAADADESDEMNFIKKHAREME-AEGVD--NTAARLFSNPPGDYGSMVNERVGTGDWEDSRELGDT 1130 (1353)
T ss_pred HHHHHHHHHHHHHHHhCCCCcccCHHHHHHHHHH-hcCCC--cccceeecCCCCchhhhHHHHHhcCCCCCHHHHHHH
Confidence 9999999999999999999999999999999854 56884 788999999999999999999999999999999996
No 6
>PRK05989 cobN cobaltochelatase subunit CobN; Reviewed
Probab=100.00 E-value=2.1e-238 Score=2241.58 Aligned_cols=975 Identities=31% Similarity=0.562 Sum_probs=817.2
Q ss_pred CcEEEEEEEcccchhHHHHHHHHHHHhhcCCceEEEEEeehhhccChhhHHHHHH-HhhcCCEEEEeccccHHHHH-HHH
Q 001056 75 PTVKIVYVVLEAQYQSALSAAVQALNQQVNYASYEVVGYLVEELRDVDTYKTFCK-DLENANIFIGSLIFVEELAL-KIK 152 (1171)
Q Consensus 75 ~~~~~v~v~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~ad~~~~sllf~~~~~~-~~~ 152 (1171)
++-.+|+++...+..+++++|...+-..+| ++..+....++++...+.+.+ .++.+|+||..+++...... .+.
T Consensus 23 ~~a~~~~ls~~~~~l~~~~~a~~~~~~~~~----~lr~~~~~~l~~~~~~d~~~~~~~~~~~~v~v~~~Gg~~~~~~~~e 98 (1244)
T PRK05989 23 TPADIVLLSAADTDLALLAAAVRRLPDDFP----SLRLANLLRLQQPASVDLYVEDVLRHADVVVVRLLGGRRYWPYGLE 98 (1244)
T ss_pred CCccEEEEEcccchHHHHHHHHHhcccCCc----ceeecChhhcCChhHHHHHHHHhhccCCEEEEECCCCchhhHhHHH
Confidence 344688888888888888888854433344 344446666778877666544 44667799999998755432 233
Q ss_pred HHHHHhhcccCEEEeccChhhHhhhcccCcccccccCCCCchhHHHHHhhhccCCcHHHHHHHHHhCCCeeEEcCCCChh
Q 001056 153 AAVEKERDRLDAVLVFPSMPEVMRLNKLGSFSMSQLGQSKSPFFQLFKKKKQGAGFADSMLKLVRTLPKVLKYLPSDKAQ 232 (1171)
Q Consensus 153 ~~~~~~~~~~~~~~~~~s~~~v~~~t~lG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lPg~~~~ 232 (1171)
..++..+++--++++++.. .... .. +.. +. -+|
T Consensus 99 ~~~~~~~~~~~~l~~~~g~------------------~~~d--~~--------------l~~-~s-------t~~----- 131 (1244)
T PRK05989 99 ALVALAARRGAPLIVLPGD------------------DAPD--PE--------------LPA-LS-------TVP----- 131 (1244)
T ss_pred HHHHHHHhcCCeEEEECCC------------------CCcC--cc--------------hhh-cc-------CCC-----
Confidence 3333333332344443210 0000 00 000 00 011
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCccccCCCcCCCCcccccccccccCCCCCCcCCHHHHHHHhccCCCccc
Q 001056 233 DARLYILSLQFWLGGSPDNLQNFLKMISGSYVPALRGQKIEYADPVLFLDTGIWHPLAPCMYDDVKEYLNWYGTRKDTNE 312 (1171)
Q Consensus 233 d~~~~~~~~~Y~~~Gg~eN~~nll~~l~~~y~~~~~g~~~~~~~P~~~P~~GiyHP~~~~~f~~~~~Y~~Wy~~~~~~~~ 312 (1171)
...+..+++||.+||.+|++|||+||+..|. +..+.++||+++|+.|||||+ ..|+++++|++||..+
T Consensus 132 -~~~~~~~~~Y~~~GG~~N~~nll~~l~~~~~----~~~~~~~~p~~~p~~giYh~~--~~~~~~~~y~~~~~~~----- 199 (1244)
T PRK05989 132 -AELAARLWRYLAEGGPANLRNLLRYLADTAL----GTGDEPEPPVPLPAAGIYHPG--KAFASLEDYLAWWAPR----- 199 (1244)
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHc----CCCCCCCCCcccCccceeCCC--cCcCCHHHHHHHhhcc-----
Confidence 2245677999999999999999999998775 455678999999999999986 5789999999998532
Q ss_pred ccCCCCCCeEEEEeeccccccCCChHHHHHHHHHHHCCCcEEEEEecCCC---CchhhhHhhccccCCCccceeeeeccc
Q 001056 313 KLKGPDAPVIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLD---FAGPVERFFVDPVMKKPMVNSAISLTG 389 (1171)
Q Consensus 313 ~~~~~~~p~Vgil~yrs~~~~g~~~~~daLI~~LE~~G~~vipvf~~gl~---~~~~v~~~f~~~~~~~~~VDavIn~tg 389 (1171)
..|+|||+|||+|+++||++++|+||++||++|+||+|||+.+++ ....+++||. +++.||+|||+|+
T Consensus 200 -----~~p~vgilfyr~~~~~~~~~~idali~~Le~~G~nvipvf~~~~k~~~~~~~~~~~~~----~~~~vd~ii~~~~ 270 (1244)
T PRK05989 200 -----KAPTVAILFYRAHLQAGNTAPIDALIAALEARGLNPLPVFVSSLKDAESPEVLEDLFN----ADALVDAVLNATG 270 (1244)
T ss_pred -----CCCeEEEEEecchhccCCcHHHHHHHHHHHHCCCeEEEEEecCccccchHHHHHHHhc----CCCCccEEEEcCC
Confidence 129999999999999999999999999999999999999999984 3456788874 4567999999999
Q ss_pred ccccCCCCCCCchhHHHHhhhCCCcEEeEecCCCCCHHHHhcCCCCCChhhhhhheeccccCcceeeEEEEEecCC---C
Q 001056 390 FALVGGPARQDHPRAIEALRKLDVPYIVALPLVFQTTEEWLNSTLGLHPIQVALQVALPELDGGLEPIVFAGRDPR---T 466 (1171)
Q Consensus 390 FsL~ggpa~~~~~~~~~~L~~LnVPvl~ai~l~~qt~eeW~~s~~GL~p~~~~~~ValPElDG~I~piv~~g~~~~---~ 466 (1171)
|++++ +. .++++|++|||||||+++++ ++.++|++|++||+|.+++|+|+||||||+|+|+++++++.. .
T Consensus 271 f~l~~-~~-----~~~~~l~~lnvPVlq~i~~~-~~~~~W~~s~~Gl~~~d~~~~ValPE~DG~I~~~~i~~~~~~~~~~ 343 (1244)
T PRK05989 271 FALAA-AA-----WDVEVLAALDVPVLQVICSG-GNREAWEASSQGLSPRDIAMQVALPEFDGRIIPRAISFKELDEDGV 343 (1244)
T ss_pred ccccC-cc-----hhhHHHHHCCCCEEEEeeCC-CCHHHHhhCCCCCCHHHHHHheechhcCCeeeeEEEEEEecccCCc
Confidence 99865 21 25689999999999999875 999999999999999999999999999999999999998642 2
Q ss_pred CccccchHHHHHHHHHHHHHHHcccCCCCCceEEEEeecCCCCCCCccccCCCChHHHHHHHHHHHHHCCCCCCCCCCCH
Q 001056 467 GKAHALHKRVEQLCTRAIRWGELKRKTKAEKKLAITVFSFPPDKGNIGTAAYLNVFSSIFSVLKDLQRDGYNVEGLPETS 546 (1171)
Q Consensus 467 ~~~~pipeRi~~la~r~~~W~~LR~kpn~eKKVAIil~nyPp~~g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~vg~~P~~~ 546 (1171)
..+.|+||||+++|+|+++|++||+|||+|||||||||||||+++|||+|+|||||+|+++||++||++||+|+++|+|+
T Consensus 344 ~~~~pi~eri~~la~r~~~w~~Lr~k~n~eKkVAiil~nyP~~~~~ig~a~gLDvp~Sl~~iL~~L~~~GY~v~~lP~~~ 423 (1244)
T PRK05989 344 VEYVPDPERIDFVAGLARRWARLRRKPNADKRVALILANYPTKDGRIGNAVGLDTPASAVRLLRALRAAGYDVGDLPADG 423 (1244)
T ss_pred ceeeeCHHHHHHHHHHHHHHHHHccCChhHCEEEEEecCCCCCCCcceecccCChHHHHHHHHHHHHHCCCCCCCCCCCH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc--ccccCCccc--cccccccHHHHhhhhH-----HHHHHHHHhCCCCCCCCCC--CCeEEEeeeeeccE
Q 001056 547 EALIEEIIHDK--EAQFSSPNL--NIAYKMGVREYQSLTP-----YATALEENWGKPPGNLNSD--GENLLVYGKQYGNV 615 (1171)
Q Consensus 547 ~~L~~~il~~~--~~~~~~~~~--~~~~~~~~~~Y~~~~~-----~~~~i~~~WG~ppG~~~~~--g~~~~I~G~~fGNV 615 (1171)
++|+++|+... ...|.+.+. .....+|+++|++|+. .|++|+++||+|||++|++ +++|+|||++||||
T Consensus 424 ~eL~~~l~~~g~n~~~w~~~~~~~~~~~~~~~~~Y~~wf~~LP~~~r~~v~~~WG~ppg~~m~~~~~~~~~Ipgi~~GNV 503 (1244)
T PRK05989 424 DALIHALLLAGGTNDFWLTGEQLRGAAQSLPLADYRAWFATLPEEVRDEVTERWGPPPGDPYVREGDGRFVIPGLRFGNV 503 (1244)
T ss_pred HHHHHHHHhcCCCCcccCchhhhcCccccCCHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCccccCCCeEEEeeEeECCE
Confidence 99999888643 356766533 3456799999999963 6999999999999999998 57799999999999
Q ss_pred EEeeCCCCCCCCCccccccCCCCCCCchhHHHHHHHhhhcCccEEEEecCCCcCCCCCCCccCCCCCCccccccCCCCee
Q 001056 616 FIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYSFVEKIFKADAVLHFGTHGSLEFMPGKQVGMSDVCYPDSLIGNIPNV 695 (1171)
Q Consensus 616 fIgvQP~RG~~~Dp~~lyHd~~lpP~HqYlAfY~WL~~~F~ADAviH~GtHGtLEwLPGK~vGLS~~cwPd~liGdlPni 695 (1171)
||||||+|||++|++++||||++||||||+|||+||+++|+|||||||||||||||||||++|||++||||+|||+||||
T Consensus 504 ~v~~QP~RG~~~d~~~~yHd~~lpP~HqYlAfY~WL~~~f~ADAiIH~GtHGtlEwLPGK~vgLS~~c~Pd~llgdlP~i 583 (1244)
T PRK05989 504 FVGIQPPRGYGGDPVAIYHDPDLPPPHHYLAFYLWLREGFGADAVVHVGKHGNLEWLPGKSVGLSADCYPDAALGDLPHL 583 (1244)
T ss_pred EEEeCCCcccCCCchhhhcCCCCCCChhHHHHHHHHHhhcCCCEEEECCCCcccccCCCccccCCcccChHHHhCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCcchhhHHhhhccccccccCCCCCcCCCCchHHHHHHHHHHHHHhcc--CCCCchHHHHHHHHHHHHcCCcccC
Q 001056 696 YYYAANNPSEATIAKRRSYANTISYLTPPAENAGLYKGLKQLSELISSYQSLK--DTGRGPQIVSSIISTAKQCNLDKDV 773 (1171)
Q Consensus 696 Y~YivnnPgEg~~AKRR~~AviIsHLtPP~~~AgLY~~L~eL~~li~eY~~~~--~~~~~~~l~~~I~~~a~~~~L~~dl 773 (1171)
|||||||||||+||||||+|||||||||||++||||++|++|++||+||+++. ++.+++.+++.|+++++++||++|+
T Consensus 584 YpYivnnpGEg~qAKRR~~AviIdHLtPP~~~aglyg~l~~Le~li~eY~~a~~~d~~~~~~l~~~I~~~~~~~~l~~dl 663 (1244)
T PRK05989 584 YPFIVNDPGEGTQAKRRAQAVIIDHLTPPMTRAELYGDLADLEQLIDEYYEAAALDPRRLPALREQILELVRAANLDRDL 663 (1244)
T ss_pred EEEECCCcchHHHHHHcccceecccCCCCcccccccHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHHcCChhhc
Confidence 99999999999999999999999999999999999999999999999999864 6678899999999999999999999
Q ss_pred CCCcccccCChHHHhHHHHHHHHHHHHHHhccCCCCceecccCCChHHHHHHHHHHHhcCCCc--ccccchhHHHHHHhC
Q 001056 774 ELPDEGAEISAKERDLVVGKVYSKIMEIESRLLPCGLHVIGEPPSALEAVATLVNIAALDRPE--DEIASLPSILAETVG 851 (1171)
Q Consensus 774 ~~~~~~~~~~~~~~d~~v~~l~~yL~el~~~~ip~GLHv~G~~p~~e~~~~~l~~~~~~~r~~--~~~~sL~~~la~~~g 851 (1171)
+++... +.++|++++++||+||||||+++||+||||||++|++|++++++.+|+++++.. ++..||+++++..++
T Consensus 664 ~~~~~~---~~~~~~~~l~~l~~yL~elk~~~i~~GLHifG~~p~~e~l~~~v~a~~r~~~~~~~~~~~~l~~~la~~~~ 740 (1244)
T PRK05989 664 GLSEAP---DEDDFDDFLLHLDGYLCELKEAQIRDGLHIFGEAPEGEQRVDLVLAILRAPQGDGEGARPGLRRALALDLG 740 (1244)
T ss_pred Cccccc---ccccHHHHHHHHHHHHHHHHhhhcCCCceecCCCCChHHHHHHHHHHHhccccccccccccHHHHHHHhcC
Confidence 875422 235688899999999999999999999999999999999999999999887633 457899999999997
Q ss_pred CC---hhhhhcCCCCCcc---------cHHHHHHHHHHHHHHHHHHHHhhccccCCchHHHHHHHHhhhccCCCchhhhh
Q 001056 852 RD---IEDIYRGSDKGIL---------KDVELLRQITEASRGAISAFVEKTTNKKGQVVDVADKLSSILGFGINEPWIQY 919 (1171)
Q Consensus 852 ~~---~~~l~~~~~~~~~---------~~~~ll~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 919 (1171)
++ +.+.+.+.....+ +....+++++..++..+... ....+
T Consensus 741 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~--- 792 (1244)
T PRK05989 741 LDACDLAEPWTGPRPAALLALDDAPWRTAGDTVERLEVLAAELVEAL-------------------------EPAGW--- 792 (1244)
T ss_pred cchhhhhhhhccccchhhhhhccccccchhHHHHHHHHHHHHHHhhh-------------------------ccccc---
Confidence 76 3333322211111 01111222222222222110 00000
Q ss_pred hcccccccccHHHHHHHHHHHHHHHhhh-ccchhHHHHHhhhCCCccCCCCCCCCCC-CCCCCCCCCcccccCCCCCCCH
Q 001056 920 LSNTKFYRADRATLRTLFEFVGECLKLV-VADNELGSLKQALEGKYVEPGPGGDPIR-NPKVLPTGKNIHALDPQAIPTT 997 (1171)
Q Consensus 920 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~-~~~~El~~LL~aL~G~YI~PgpgGdp~R-~pdvLPTGRNfys~DP~~iPT~ 997 (1171)
......+.........++ .+++|+++||+||+|+||||||||||+| ||||||||||||+|||++|||+
T Consensus 793 ----------~~~~~~l~~~~~~~~~~l~~s~~E~~~Ll~aL~G~yI~pGpgGdP~Rg~pdvLPTGRNfys~Dp~~iPT~ 862 (1244)
T PRK05989 793 ----------DPTAAVLEFAATELVPRLAATPDEIEQLLRGLDGRFVPPGPSGAPTRGRPDVLPTGRNFYSVDPRAVPTR 862 (1244)
T ss_pred ----------hhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHhCCcccCCCCCCccccCCCCCCCCCCcccCcCcccCCCH
Confidence 001111222222333333 3468999999999999999999999999 6999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCceEEEEEEecccccccChhHHHHHHHhCCeeccC-CCCCceeeEEecccccCCC
Q 001056 998 AAMQSAKVVVDRLIERQKVDNGGKYPETVALVLWGTDNIKTYGESLAQVLWMIGVRPVSD-TFGRVNRVEPVSLEELGRP 1076 (1171)
Q Consensus 998 aAw~~G~~lA~~lL~~y~~e~~G~yPe~va~vLWgtdtmrt~Ge~iAqiL~LlGvrPvwd-~~GrV~g~ElIPL~ELgRP 1076 (1171)
+||++|+++|++||++|++ +||+|||+|||+|||||||||+|++||||||||||||||| ++|||+|+|||||+|||||
T Consensus 863 aAw~~G~~lA~~ll~~y~~-e~G~yPe~va~~lWgt~tmRt~G~~iAqiL~LLGVrPvWd~~~grV~g~evIPl~eLgRP 941 (1244)
T PRK05989 863 AAWELGQKLAEQLLERYLQ-EHGEYPRSVGLSVWGTSTMRTGGDDIAQALALLGVRPVWDEASRRVTGLEIIPLAELGRP 941 (1244)
T ss_pred HHHHHHHHHHHHHHHHHHH-hcCCCCceeEEEEEchHhhhhCCHHHHHHHHHcCCCccccCCCCCccceEEeCHHHcCCC
Confidence 9999999999999999965 5699999999999999999999999999999999999999 7999999999999999999
Q ss_pred ceeEEEecCcchhhhHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHH---HcCCCcc----cccccccCCCCCCch
Q 001056 1077 RIDVVVNCSGVFRDLFINQMNLLDRAVKMVAELDEPEEQNYVRKHALEQAK---ALGIDVR----EAATRVFSNASGSYS 1149 (1171)
Q Consensus 1077 RIDVvv~iSGiFRD~Fp~~i~LlD~Av~~aA~lDEp~e~N~Vrkh~~~~~~---~~G~~~~----~A~~RIFg~~pG~YG 1149 (1171)
||||||||||||||+|||+|+|||+||++||++|||+|+||||||+++..+ +.|++.+ .|++||||++||+||
T Consensus 942 RIDVtvriSG~fRD~fp~~i~LlD~Av~~va~ldEp~e~N~vr~h~~~~~~~l~~~G~~~~~A~~~a~~RIFg~~pG~YG 1021 (1244)
T PRK05989 942 RIDVTLRISGFFRDAFPNVIALFDDAVRAVAALDEPDEDNPVRAHVRAELARLGARGLDEAEARRRATLRIFGSKPGAYG 1021 (1244)
T ss_pred CeeEEEEecchhHhhHHHHHHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHhhcCCChhhHhhhcccceecCCCCchh
Confidence 999999999999999999999999999999999999999999999998754 5788754 578999999999999
Q ss_pred hchhhHhhcCCCCChhhhhhh
Q 001056 1150 SNINLAVENSSWNDEKQLQTC 1170 (1171)
Q Consensus 1150 agV~~lVes~~We~e~dLad~ 1170 (1171)
|||+.+|++++|++++||||+
T Consensus 1022 aGv~~li~s~~W~~~~dLa~~ 1042 (1244)
T PRK05989 1022 AGLQQLIDSRNWRDDADLAEA 1042 (1244)
T ss_pred hhHHHHHhcCCCCCHHHHHHH
Confidence 999999999999999999996
No 7
>PF02514 CobN-Mg_chel: CobN/Magnesium Chelatase; InterPro: IPR003672 This family contains a domain common to the cobN protein and to magnesium protoporphyrin chelatase. CobN may play a role in cobalt insertion reactions and is implicated in the conversion of precorrin-2 to cobyrinic acid in cobalamin biosynthesis []. Magnesium protoporphyrin chelatase is involved in chlorophyll biosynthesis as the third subunit of light-independent protochlorophyllide reductase in bacteria and plants [].; GO: 0009058 biosynthetic process
Probab=100.00 E-value=8.3e-239 Score=2229.39 Aligned_cols=874 Identities=43% Similarity=0.774 Sum_probs=787.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCccccCCCcCCCCcccccccccccCCCCCCcCCHHHHHHHhccCCCcccccCCCCCC
Q 001056 241 LQFWLGGSPDNLQNFLKMISGSYVPALRGQKIEYADPVLFLDTGIWHPLAPCMYDDVKEYLNWYGTRKDTNEKLKGPDAP 320 (1171)
Q Consensus 241 ~~Y~~~Gg~eN~~nll~~l~~~y~~~~~g~~~~~~~P~~~P~~GiyHP~~~~~f~~~~~Y~~Wy~~~~~~~~~~~~~~~p 320 (1171)
++||.+||.+|++|||+||+++|+ |...+++||+++|+.|||||+.+.+|+++++|++||.++.. +++++|
T Consensus 2 ~~Y~~~GG~eN~~nll~yL~~~~~----g~~~~~~~P~~~P~~GiYhPd~~~~f~~~~eYl~w~~~~~~-----~~~~~P 72 (1098)
T PF02514_consen 2 YAYWRYGGPENLENLLRYLANEYL----GGDYPVEPPVPLPWNGIYHPDAGRVFESLEEYLAWYRKRGR-----YDPNRP 72 (1098)
T ss_pred chHHHCccHHHHHHHHHHHHHHhc----CCCCCCCCChhccceEEEeeccccccCCHHHHHHHHhhhcc-----cCCCCC
Confidence 589999999999999999999987 56778999999999999999999999999999999976532 468899
Q ss_pred eEEEEeeccccccCCChHHHHHHHHHHHCCCcEEEEEecC-CCCchhhhHhhccccCCCccceeeeecccccccCCCCCC
Q 001056 321 VIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGG-LDFAGPVERFFVDPVMKKPMVNSAISLTGFALVGGPARQ 399 (1171)
Q Consensus 321 ~Vgil~yrs~~~~g~~~~~daLI~~LE~~G~~vipvf~~g-l~~~~~v~~~f~~~~~~~~~VDavIn~tgFsL~ggpa~~ 399 (1171)
||||+|||+|+.+||++++|+||++||++|+||+|||+.+ .+....+++||.+ ++++.||+|||+++|++++++..+
T Consensus 73 ~VgIlfyrs~~~~g~~~~vdaLI~~LE~~G~nvipvf~~~~~~~~~~i~~~f~~--~g~~~vDaIIn~~~f~l~~~~~~~ 150 (1098)
T PF02514_consen 73 TVGILFYRSYWLSGNTAVVDALIRALEERGLNVIPVFCSSGPDSQEAIEDYFMD--DGKPRVDAIINLTGFSLGGGPAGG 150 (1098)
T ss_pred EEEEEeehhhhhcCCcHHHHHHHHHHHHCCCeEEEEEecCccchHHHHHHHHhh--cCCCCceEEEEcCccccCCCCcch
Confidence 9999999999999999999999999999999999999987 5556779999987 589999999999999999987543
Q ss_pred CchhHHHHhhhCCCcEEeEecCCCCCHHHHhcCCCCCChhhhhhheeccccCcceeeEEEEEecCC--CC----ccccch
Q 001056 400 DHPRAIEALRKLDVPYIVALPLVFQTTEEWLNSTLGLHPIQVALQVALPELDGGLEPIVFAGRDPR--TG----KAHALH 473 (1171)
Q Consensus 400 ~~~~~~~~L~~LnVPvl~ai~l~~qt~eeW~~s~~GL~p~~~~~~ValPElDG~I~piv~~g~~~~--~~----~~~pip 473 (1171)
++++|++|||||||+++++++|.++|++|++||+|.+++|+|+||||||+|+|+++|+++.. +| .++|||
T Consensus 151 ----~~~~L~~LnVPVlq~i~~~~~t~eeW~~S~~GL~~~e~~~~ValPE~DG~I~pivia~~~~d~~~g~~~~~~~PIp 226 (1098)
T PF02514_consen 151 ----AIELLKELNVPVLQAITLYYQTREEWEESPQGLSPMEVAMQVALPEFDGAIEPIVIAGKEPDPETGFEVREYVPIP 226 (1098)
T ss_pred ----hHHHHHHCCCCEEEeeccCCCCHHHHHhCCCCCCHHHHHHHhhhhhhccccceEEEEEeecCcccCccceeEEECH
Confidence 67899999999999999889999999999999999999999999999999999999998652 23 578999
Q ss_pred HHHHHHHHHHHHHHHcccCCCCCceEEEEeecCCCCCCCccccCCCChHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q 001056 474 KRVEQLCTRAIRWGELKRKTKAEKKLAITVFSFPPDKGNIGTAAYLNVFSSIFSVLKDLQRDGYNVEGLPETSEALIEEI 553 (1171)
Q Consensus 474 eRi~~la~r~~~W~~LR~kpn~eKKVAIil~nyPp~~g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~vg~~P~~~~~L~~~i 553 (1171)
|||+++|+||++|++||+|||+||||||||||||||++|||+|+|||||+||.+||++||++||+|+++|+|+++|++.|
T Consensus 227 erI~~la~ra~~W~~LR~kpN~eKKVAII~yNyPpg~~nIGaA~gLDvp~Sl~~IL~~Lke~GY~v~~iP~s~~eL~~~l 306 (1098)
T PF02514_consen 227 ERIERLADRAKRWARLRRKPNAEKKVAIIYYNYPPGKGNIGAAAGLDVPESLVNILKALKEEGYDVGEIPESGEELIDLL 306 (1098)
T ss_pred HHHHHHHHHHHHHHHHhcccccccEEEEEEecCCCCCCcccccCCCCcHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred Hhcc-ccccCCcccc------ccccccHHHHhhhhH-----HHHHHHHHhCCCCCCCCCC----CCeEEEeeeeeccEEE
Q 001056 554 IHDK-EAQFSSPNLN------IAYKMGVREYQSLTP-----YATALEENWGKPPGNLNSD----GENLLVYGKQYGNVFI 617 (1171)
Q Consensus 554 l~~~-~~~~~~~~~~------~~~~~~~~~Y~~~~~-----~~~~i~~~WG~ppG~~~~~----g~~~~I~G~~fGNVfI 617 (1171)
+++. ...|...+.. .+..+|+++|++|+. .|++|+++||+|||++|+. +++|+|||++||||||
T Consensus 307 ~~g~~~~~~a~~~~~~l~~~~~~~~lp~~~Y~~Wf~~LP~~~r~~v~~~WG~ppg~~mv~~~~~~~~~vIpgi~~GNV~i 386 (1098)
T PF02514_consen 307 LQGRNNGPWAPGELEKLVKSGDAVLLPLEEYLAWFAELPEELRQEVEERWGEPPGDIMVYEDNGGGYFVIPGIRFGNVFI 386 (1098)
T ss_pred HhcccCCcccCCcchhhhcccccccCCHHHHHHHHHhcCHHHHHHHHHhcCCCccCCcceecccCCEEEEEeeeeCCEEE
Confidence 9432 2233333221 245799999999974 6999999999999999987 7789999999999999
Q ss_pred eeCCCCCCCCCccccccCCCCCCCchhHHHHHHHhhhcCccEEEEecCCCcCCCCCCCccCCCCCCccccccCCCCeeeE
Q 001056 618 GVQPTFGYEGDPMRLLFSKSASPHHGFAAYYSFVEKIFKADAVLHFGTHGSLEFMPGKQVGMSDVCYPDSLIGNIPNVYY 697 (1171)
Q Consensus 618 gvQP~RG~~~Dp~~lyHd~~lpP~HqYlAfY~WL~~~F~ADAviH~GtHGtLEwLPGK~vGLS~~cwPd~liGdlPniY~ 697 (1171)
+|||+|||++|++++|||+++||||||+|||+||+++|+|||||||||||||||||||++|||.+||||+||||||||||
T Consensus 387 ~~QP~RG~~~d~~~lyHd~~lpP~HqYlAfY~wl~~~f~ADAviH~GtHGtlEwLPGK~~gLS~~c~PdiligdlP~iYp 466 (1098)
T PF02514_consen 387 GPQPPRGWEEDPMKLYHDPDLPPPHQYLAFYLWLQEVFGADAVIHVGTHGTLEWLPGKEVGLSASCWPDILIGDLPNIYP 466 (1098)
T ss_pred EeCCCCCcCCCcchhhcCCCCCcCchHHHHHHHHHhhcCCCEEEEecCccccccCCCccccCCcccCHHHHHhcCCEEeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCcchhhHHhhhccccccccCCCCCcCCCCchHHHHHHHHHHHHHhc--cCCCCchHHHHHHHHHHHHcCCcccCCC
Q 001056 698 YAANNPSEATIAKRRSYANTISYLTPPAENAGLYKGLKQLSELISSYQSL--KDTGRGPQIVSSIISTAKQCNLDKDVEL 775 (1171)
Q Consensus 698 YivnnPgEg~~AKRR~~AviIsHLtPP~~~AgLY~~L~eL~~li~eY~~~--~~~~~~~~l~~~I~~~a~~~~L~~dl~~ 775 (1171)
|||||||||+||||||+|||||||||||++||||++|++|+++|++|+++ .++.+++.+++.|+++|+++||++|+++
T Consensus 467 Yiv~npgEg~~AKRR~~AviI~HltPp~~~agly~~l~~L~~li~eY~~a~~~~~~~~~~~~~~I~~~a~~~~l~~dl~l 546 (1098)
T PF02514_consen 467 YIVNNPGEGTQAKRRGYAVIIDHLTPPMTRAGLYGELAELEELIDEYREARQEDPARKEALREEILELARKLGLDKDLGL 546 (1098)
T ss_pred EecCCcchHHHHHhhccCeecCCCCCccccCCCcHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHcCCccccCC
Confidence 99999999999999999999999999999999999999999999999987 5778899999999999999999999987
Q ss_pred CcccccCChHHHhHHHHHHHHHHHHHHhccCCCCceecccCCChHHHHHHHHHHHhcCCCc-ccccchhHHHHHHhCCCh
Q 001056 776 PDEGAEISAKERDLVVGKVYSKIMEIESRLLPCGLHVIGEPPSALEAVATLVNIAALDRPE-DEIASLPSILAETVGRDI 854 (1171)
Q Consensus 776 ~~~~~~~~~~~~d~~v~~l~~yL~el~~~~ip~GLHv~G~~p~~e~~~~~l~~~~~~~r~~-~~~~sL~~~la~~~g~~~ 854 (1171)
+... .++|++++++||+||+||++++||+||||||++|++|++++++.+|++.+... ...++|++.++..+|++-
T Consensus 547 ~~~~----~~~~~~~l~~l~~yL~el~~~~ip~GLHv~G~~p~~e~~~~~v~~i~~~~~~~~~~~~~l~~~~~~~~~~~~ 622 (1098)
T PF02514_consen 547 DRAD----DEDFDEFLERLHDYLCELKESQIPDGLHVFGEPPEGEELVEMVAAILRFPNYAAGEVPSLREAIAEDLGLDD 622 (1098)
T ss_pred cccc----cccHHHHHHHHHHHHHHHHhcccCCCceeCCCCCChHHHHHHHHHHhcCCcccccccCCHHHHHHHHcCCcc
Confidence 6532 34789999999999999999999999999999999999999999999887433 457899999999998871
Q ss_pred hhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhhccccCCchHHHHHHHHhhhccCCCchhhhhhcccccccccHHHHH
Q 001056 855 EDIYRGSDKGILKDVELLRQITEASRGAISAFVEKTTNKKGQVVDVADKLSSILGFGINEPWIQYLSNTKFYRADRATLR 934 (1171)
Q Consensus 855 ~~l~~~~~~~~~~~~~ll~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 934 (1171)
....+.++.+++.+++.+............. .. .........+.
T Consensus 623 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~--------~~~~~~~~~~~ 666 (1098)
T PF02514_consen 623 -----------ETDADALELLEELARELVSPEVAQGKVLGPS-----------------ES--------PEEAEDDDELR 666 (1098)
T ss_pred -----------chhHHHHHHHHHHHHHhhhhhhhhccccccc-----------------cc--------ccccchhhHHH
Confidence 2334556666666666655443321111000 00 00000112455
Q ss_pred HHHHHHHHHHhhh-ccchhHHHHHhhhCCCccCCCCCCCCCCCCCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHHHH
Q 001056 935 TLFEFVGECLKLV-VADNELGSLKQALEGKYVEPGPGGDPIRNPKVLPTGKNIHALDPQAIPTTAAMQSAKVVVDRLIER 1013 (1171)
Q Consensus 935 ~~~~~l~~~~~~~-~~~~El~~LL~aL~G~YI~PgpgGdp~R~pdvLPTGRNfys~DP~~iPT~aAw~~G~~lA~~lL~~ 1013 (1171)
.++....+..+++ ++++|+++||+||+|+||||||||||+|||+|||||||||+|||++|||++||++|+++||+||++
T Consensus 667 ~~~~~~~~~~~~l~~~~~E~~~ll~aL~G~yv~pg~~gdp~r~~~vlPTGrN~y~~Dp~~iPt~~A~~~G~~la~~ll~~ 746 (1098)
T PF02514_consen 667 ALLEIARDYRPRLRSTTNEIDALLRALNGRYVPPGPGGDPIRNPDVLPTGRNFYSFDPRKIPTPAAWEVGKKLAEQLLER 746 (1098)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHhCCcccCCCCCCCcccCCccCCCCCcccccCcccccCHHHHHHHHHHHHHHHHH
Confidence 5556666666655 788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCceEEEEEEecccccccChhHHHHHHHhCCeeccCCCCCceeeEEecccccCCCceeEEEecCcchhhhHH
Q 001056 1014 QKVDNGGKYPETVALVLWGTDNIKTYGESLAQVLWMIGVRPVSDTFGRVNRVEPVSLEELGRPRIDVVVNCSGVFRDLFI 1093 (1171)
Q Consensus 1014 y~~e~~G~yPe~va~vLWgtdtmrt~Ge~iAqiL~LlGvrPvwd~~GrV~g~ElIPL~ELgRPRIDVvv~iSGiFRD~Fp 1093 (1171)
|++ +||+|||||||||||+|||||+|++|||||||||||||||++|||+|+|+|||+|||||||||||++||+|||+||
T Consensus 747 y~~-~~g~yPe~v~~vlW~~~t~rt~G~~~aqil~llGv~Pvw~~~grv~~~e~iPl~eL~RPRIDV~~~~sG~fRD~fp 825 (1098)
T PF02514_consen 747 YRE-EHGRYPEKVAFVLWGTETMRTGGEDIAQILYLLGVRPVWDSSGRVSGVELIPLEELGRPRIDVVVRISGLFRDAFP 825 (1098)
T ss_pred HHH-hcCCCCceeEEEEEecchhhcCCHHHHHHHHhcCceeccCCCCCCCCceeccHHHcCCCCeeEEEecchhhHHHhH
Confidence 965 5699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHccCCCCCcchHHHHHHHHH---HHcCCCccc----ccccccCCCCCCchhchhhHhhcCCCCChhh
Q 001056 1094 NQMNLLDRAVKMVAELDEPEEQNYVRKHALEQA---KALGIDVRE----AATRVFSNASGSYSSNINLAVENSSWNDEKQ 1166 (1171)
Q Consensus 1094 ~~i~LlD~Av~~aA~lDEp~e~N~Vrkh~~~~~---~~~G~~~~~----A~~RIFg~~pG~YGagV~~lVes~~We~e~d 1166 (1171)
++|+|||+||++||++|||+++||||||+++.. .++|++.++ |+.||||++||+|||||+++|++|+|++++|
T Consensus 826 ~~~~lld~Av~~~a~~dE~~~~N~v~~h~~~~~~~l~~~g~~~~~a~~~a~~RiFg~~pG~YG~gv~~~v~~~~W~~~~~ 905 (1098)
T PF02514_consen 826 NLIELLDRAVRLVAALDEPEEMNYVRKHSLELEAELRAQGMSPEEARRLATARIFGPPPGAYGTGVNELVESSAWEDEED 905 (1098)
T ss_pred HHHHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHHHccCCcchhhhhCccccccCCCCccchhHHHHHHccCcCCHHH
Confidence 999999999999999999999999999999865 357887644 6899999999999999999999999999999
Q ss_pred hhhh
Q 001056 1167 LQTC 1170 (1171)
Q Consensus 1167 Lad~ 1170 (1171)
|||+
T Consensus 906 la~~ 909 (1098)
T PF02514_consen 906 LAEV 909 (1098)
T ss_pred HHHH
Confidence 9986
No 8
>TIGR02257 cobalto_cobN cobaltochelatase, CobN subunit.
Probab=100.00 E-value=6e-231 Score=2142.41 Aligned_cols=866 Identities=29% Similarity=0.525 Sum_probs=756.2
Q ss_pred CcEEEEEEEcccchhHHHHHHHHHHHhhcCCceEEEEEeehhhccChhhHHHHHHHhhcCC-EEEEeccccHHHHHHHHH
Q 001056 75 PTVKIVYVVLEAQYQSALSAAVQALNQQVNYASYEVVGYLVEELRDVDTYKTFCKDLENAN-IFIGSLIFVEELALKIKA 153 (1171)
Q Consensus 75 ~~~~~v~v~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ad-~~~~sllf~~~~~~~~~~ 153 (1171)
++-.+|+++.-.+..+++++|.+.+..++| ++..+....++++...+.+.+.+.++| +||..+|++.....--.+
T Consensus 23 ~pa~~v~ls~~dsdl~~l~~a~~~~~~~~~----~lr~~~~~~l~~~~~~d~~~~~~~~~a~~v~v~~lGg~~~w~yg~e 98 (1122)
T TIGR02257 23 TPADIVFLSSADSDLALLAAAWKALPDDLP----SLRLANLDNLQHPASVDLYVDSTARKAKIIVVRLLGGRGYWSYGLE 98 (1122)
T ss_pred CCccEEEEEeccchHHHHHHHHHHhhcCCc----ceEecChhhcCCHHHHHHHHHHHhccCcEEEEECCCCchhhHHHHH
Confidence 344688888888999999999877654444 556668888999988888777766666 999999987775321112
Q ss_pred HHHH-hhcccCEEEeccChhhHhhhcccCcccccccCCCCchhHHHHHhhhccCCcHHHHHHHHHhCCCeeEEcCCCChh
Q 001056 154 AVEK-ERDRLDAVLVFPSMPEVMRLNKLGSFSMSQLGQSKSPFFQLFKKKKQGAGFADSMLKLVRTLPKVLKYLPSDKAQ 232 (1171)
Q Consensus 154 ~~~~-~~~~~~~~~~~~s~~~v~~~t~lG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lPg~~~~ 232 (1171)
.+.+ .+.+--.+++ +||+..+
T Consensus 99 ~l~~~~~~~~~~l~~----------------------------------------------------------~~g~~~~ 120 (1122)
T TIGR02257 99 QLQAWAEERGRQLIL----------------------------------------------------------LPGDDDP 120 (1122)
T ss_pred HHHHHHHhcCCeEEE----------------------------------------------------------eCCCCCc
Confidence 2221 1111112233 2222222
Q ss_pred h----------HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCccccCCCcCCCCcccccccccccCCCCCCcCCHHHHHH
Q 001056 233 D----------ARLYILSLQFWLGGSPDNLQNFLKMISGSYVPALRGQKIEYADPVLFLDTGIWHPLAPCMYDDVKEYLN 302 (1171)
Q Consensus 233 d----------~~~~~~~~~Y~~~Gg~eN~~nll~~l~~~y~~~~~g~~~~~~~P~~~P~~GiyHP~~~~~f~~~~~Y~~ 302 (1171)
| ...+...++||.+||.+|++|||+||+..+. ....++||+++|..|||||+.+ +
T Consensus 121 d~~l~~~st~~~~~~~~l~~Y~~~GG~~N~~~~l~~l~~~~~-----~~~~~~~p~~~p~~giyhp~~~----------~ 185 (1122)
T TIGR02257 121 DLELNELSTVPLDLSDRLWKYLREGGPENMGRFLDCLAALLT-----QDEAPVPPKAIPKAGYYDPGRG----------V 185 (1122)
T ss_pred ChhhHhcCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc-----CCCCCCCCcccCccCccCCCcc----------c
Confidence 2 2344566899999999999999999988764 2456799999999999999854 2
Q ss_pred HhccCCCcccccCCCCCCeEEEEeeccccccCCChHHHHHHHHHHHCCCcEEEEEecCCCCchhhhHhhccccCCCccce
Q 001056 303 WYGTRKDTNEKLKGPDAPVIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMVN 382 (1171)
Q Consensus 303 Wy~~~~~~~~~~~~~~~p~Vgil~yrs~~~~g~~~~~daLI~~LE~~G~~vipvf~~gl~~~~~v~~~f~~~~~~~~~VD 382 (1171)
||. +++|+|||+|||+|+++||++++|+||++||++|+||+|||+++++. ..+.++|.+. .++..||
T Consensus 186 ~~~-----------~~~p~vgilfyr~~~~~~~~~~idali~~Le~~G~~~ipvf~~sl~~-~~~~~~~~~~-~~~~~vd 252 (1122)
T TIGR02257 186 WPL-----------EKGPRVGILFYRSLLLAGDTALIEALIDALRQRGLNPVPIFVSSLKD-PAVQAGLLDA-LKEEDPA 252 (1122)
T ss_pred ccc-----------CCCCEEEEEEehhhhhcCCcHHHHHHHHHHHHCCCeEEEEEeCCCCc-hhHHHHHHHh-ccCCCCc
Confidence 652 34699999999999999999999999999999999999999999864 3445555542 3567799
Q ss_pred eeeecccccccCCCCCCCchhHHHHhhhCCCcEEeEecCCCCCHHHHhcCCCCCChhhhhhheeccccCcceeeEEEEEe
Q 001056 383 SAISLTGFALVGGPARQDHPRAIEALRKLDVPYIVALPLVFQTTEEWLNSTLGLHPIQVALQVALPELDGGLEPIVFAGR 462 (1171)
Q Consensus 383 avIn~tgFsL~ggpa~~~~~~~~~~L~~LnVPvl~ai~l~~qt~eeW~~s~~GL~p~~~~~~ValPElDG~I~piv~~g~ 462 (1171)
+|||+|+|+++... ...++++|++|||||||++. ++++.++|++|++||+|.+++|+|+||||||+|+|++++++
T Consensus 253 ~iin~~~F~~~~~~----~~~~~~~l~~l~vPVlq~i~-~~~s~~~W~~s~~Gl~~~d~~~~ValPE~DG~I~~~~i~~k 327 (1122)
T TIGR02257 253 LIITTTGFASSNEQ----ADNGETLWDSLGVPVLQVIS-SNTSREVWEDSSRGLAPRDLAMHVVLPELDGRITTRAISFK 327 (1122)
T ss_pred EEEECCcccccCCc----chhhHHHHHHCCCCEEEeec-CCCCHHHHHhCCCCCCHHHHHHheechhhCCcceeEEEEee
Confidence 99999999985421 22467899999999999996 57999999999999999999999999999999999999986
Q ss_pred cC-----CC----CccccchHHHHHHHHHHHHHHHcccCCCCCceEEEEeecCCCCCCCccccCCCChHHHHHHHHHHHH
Q 001056 463 DP-----RT----GKAHALHKRVEQLCTRAIRWGELKRKTKAEKKLAITVFSFPPDKGNIGTAAYLNVFSSIFSVLKDLQ 533 (1171)
Q Consensus 463 ~~-----~~----~~~~pipeRi~~la~r~~~W~~LR~kpn~eKKVAIil~nyPp~~g~iGtAa~LDv~~Sl~~iL~~Lk 533 (1171)
.. .+ ..+.|+||||+++|+|+++|++||+|||+|||||||||||||+++++|+|+|||||+|+++||++||
T Consensus 328 ~~~~~d~~~~~~~~~~~pi~eri~~~a~r~~~W~~Lr~~pn~eKriAiil~nyP~~~~~ig~a~gLD~p~Sl~~iL~~Lk 407 (1122)
T TIGR02257 328 GVSDVDPALESAITTYRPDPDRIKWVADLAANWIKLQRKPNAERRIALVLANYPVRDGRIGNGVGLDTPASVVNILHALK 407 (1122)
T ss_pred ecccCCcccccccceeeeCHHHHHHHHHHHHHHHHHccCChhhCEEEEEecCCCCCcCccceecCCChHHHHHHHHHHHH
Confidence 42 11 2578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCCCCC--CCCCHHHHHHHHHhccccccCCccccccccccHHHHhhhhH-----HHHHHHHHhCCCCCCCCCC-CCeE
Q 001056 534 RDGYNVEG--LPETSEALIEEIIHDKEAQFSSPNLNIAYKMGVREYQSLTP-----YATALEENWGKPPGNLNSD-GENL 605 (1171)
Q Consensus 534 ~~GY~vg~--~P~~~~~L~~~il~~~~~~~~~~~~~~~~~~~~~~Y~~~~~-----~~~~i~~~WG~ppG~~~~~-g~~~ 605 (1171)
++||+|++ +|+|+++|+++|+.+....+..........+|+++|++|+. .+++|+++||+|||++|++ |++|
T Consensus 408 ~~GY~v~~~~lP~~~~~L~~~l~~~~~n~~~~~~~~~~~~l~~~~Y~~wf~~LP~~~r~~v~~~WG~ppg~~mv~~~~~~ 487 (1122)
T TIGR02257 408 EQGYDLGGGPIPSNGDALIRLLIRGRTNDLESHDREPLDKLSLDEYLTFWDTLPLKAKQEIVLRWGEPSQDPDLEDKKGF 487 (1122)
T ss_pred HCCCCCCCCCCCCCHHHHHHHHHhcCCcccccccccccccCCHHHHHHHHHhCCHHHHHHHHHHhCCCCCCCccCCCCeE
Confidence 99999998 89999999999997654322211112245699999999963 6999999999999999986 4459
Q ss_pred EEeeeeeccEEEeeCCCCCCCCCccccccCCCCCCCchhHHHHHHHhhhcCccEEEEecCCCcCCCCCCCccCCCCCCcc
Q 001056 606 LVYGKQYGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYSFVEKIFKADAVLHFGTHGSLEFMPGKQVGMSDVCYP 685 (1171)
Q Consensus 606 ~I~G~~fGNVfIgvQP~RG~~~Dp~~lyHd~~lpP~HqYlAfY~WL~~~F~ADAviH~GtHGtLEwLPGK~vGLS~~cwP 685 (1171)
+|||++||||||+|||+|||++|++++||||++||||||+|||+||+++|+|||||||||||||||||||++|||++|||
T Consensus 488 ~ipgi~~GNv~v~~QP~RG~~~d~~~~yHd~~lpP~H~YlAfY~Wl~~~f~ADAiIH~GtHGtlEwLPGK~vgLS~~c~P 567 (1122)
T TIGR02257 488 PINGLRFGNIFVLIQPDRGYDIDPIADYHSPDLAPPHRYLAFYFWLRKVFGADAIVHVGKHGTLEWLPGKGVGLSETCFP 567 (1122)
T ss_pred EEeeeeECCEEEEeCCCcccCCCchHhhcCCCCCCCchHHHHHHHHHhhcCCCEEEECCCCcCcccCCCccccCCcccCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCeeeEEecCCcchhhHHhhhccccccccCCCCCcCCCCchHHHHHHHHHHHHHhcc--CCCCchHHHHHHHHH
Q 001056 686 DSLIGNIPNVYYYAANNPSEATIAKRRSYANTISYLTPPAENAGLYKGLKQLSELISSYQSLK--DTGRGPQIVSSIIST 763 (1171)
Q Consensus 686 d~liGdlPniY~YivnnPgEg~~AKRR~~AviIsHLtPP~~~AgLY~~L~eL~~li~eY~~~~--~~~~~~~l~~~I~~~ 763 (1171)
|+|||+|||||||||||||||+||||||+|||||||||||++||||++|++|++||+||+++. ++.+++.+++.|+++
T Consensus 568 d~lig~lP~iYpyivnnpGEg~qAKRR~~AviIdHLtPP~~~a~lyg~l~~Le~lideY~~a~~~d~~r~~~l~~~I~~~ 647 (1122)
T TIGR02257 568 EIVLGPLPHIYPFIVNDPGEGAQAKRRTHAVILDHLTPPLTRAGLYGPLHDLERLLDEYYEADLLDRRRLDILERQILDL 647 (1122)
T ss_pred HHHhCCCCEEEEEeCCCcchHHHHHhcccceeeccCCCCcccccccHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999764 566788999999999
Q ss_pred HHHcCCcccCCCCcccccCChHHHhHHHHHHHHHHHHHHhccCCCCceecccCCChHHHHHHHHHHHhcCCCcccccchh
Q 001056 764 AKQCNLDKDVELPDEGAEISAKERDLVVGKVYSKIMEIESRLLPCGLHVIGEPPSALEAVATLVNIAALDRPEDEIASLP 843 (1171)
Q Consensus 764 a~~~~L~~dl~~~~~~~~~~~~~~d~~v~~l~~yL~el~~~~ip~GLHv~G~~p~~e~~~~~l~~~~~~~r~~~~~~sL~ 843 (1171)
++++||++|++++.. +++++++++||+||||||+++||+||||||++|+.+..
T Consensus 648 ~~~~~l~~dl~~~~~------~~~~~~l~~l~~yL~elk~~~i~~GLHvfG~~p~~~~~--------------------- 700 (1122)
T TIGR02257 648 IQDLGLDSEIGVDRS------DKPDSALERLDAYLCDLKESQIRDGLHIFGRAPDDLSD--------------------- 700 (1122)
T ss_pred HHHcCCccccCCCcc------ccHHHHHHHHHHHHHHHHhhhcCCCCeeCCCCCcchhh---------------------
Confidence 999999999987542 35778999999999999999999999999999985310
Q ss_pred HHHHHHhCCChhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhhccccCCchHHHHHHHHhhhccCCCchhhhhhccc
Q 001056 844 SILAETVGRDIEDIYRGSDKGILKDVELLRQITEASRGAISAFVEKTTNKKGQVVDVADKLSSILGFGINEPWIQYLSNT 923 (1171)
Q Consensus 844 ~~la~~~g~~~~~l~~~~~~~~~~~~~ll~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 923 (1171)
+.+
T Consensus 701 -------------------------------------~~~---------------------------------------- 703 (1122)
T TIGR02257 701 -------------------------------------APW---------------------------------------- 703 (1122)
T ss_pred -------------------------------------HHH----------------------------------------
Confidence 000
Q ss_pred ccccccHHHHHHHHHHHHHHHhhhccchhHHHHHhhhCCCccCCCCCCCCCC-CCCCCCCCCcccccCCCCCCCHHHHHH
Q 001056 924 KFYRADRATLRTLFEFVGECLKLVVADNELGSLKQALEGKYVEPGPGGDPIR-NPKVLPTGKNIHALDPQAIPTTAAMQS 1002 (1171)
Q Consensus 924 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~El~~LL~aL~G~YI~PgpgGdp~R-~pdvLPTGRNfys~DP~~iPT~aAw~~ 1002 (1171)
+ .++++|+++||+||+|+||||||||||+| ||||||||||||+|||++|||++||++
T Consensus 704 -----------------~-----~~~~~E~~~ll~aL~G~yV~pGp~G~P~Rg~pdvLPTGRNfys~Dpr~iPT~aAw~~ 761 (1122)
T TIGR02257 704 -----------------R-----QSTEAEIAGLLAGLNGRYVSAGPSGAPTRGRPDVLPTGRNFYSVDLRGLPTPAAWDL 761 (1122)
T ss_pred -----------------H-----hccHHHHHHHHHHhCCceeCCCCCCCcccCCCCCCCCCCcccccCcccCCCHHHHHH
Confidence 0 01357999999999999999999999999 699999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCceEEEEEEecccccccChhHHHHHHHhCCeeccCC-CCCceeeEEecccccCCCceeEE
Q 001056 1003 AKVVVDRLIERQKVDNGGKYPETVALVLWGTDNIKTYGESLAQVLWMIGVRPVSDT-FGRVNRVEPVSLEELGRPRIDVV 1081 (1171)
Q Consensus 1003 G~~lA~~lL~~y~~e~~G~yPe~va~vLWgtdtmrt~Ge~iAqiL~LlGvrPvwd~-~GrV~g~ElIPL~ELgRPRIDVv 1081 (1171)
|+++||+||++|++ +||+|||+|||+||||+||||+|++|||||||||||||||+ +|||+|+|||||+||||||||||
T Consensus 762 G~~lAe~ll~~y~~-ehG~yPe~va~~lWgt~tmRt~Ge~iAqiL~LlGVrPvWd~~~grV~g~eiIPl~eLgRPRIDVt 840 (1122)
T TIGR02257 762 GKKSAEQLIERYLQ-DHGDWPRSLALSVWGTATMRTGGEDIAQALALLGVRPVWDGASRRVIDLEVIPLSLLGRPRVDVT 840 (1122)
T ss_pred HHHHHHHHHHHHHH-hcCCCCceEEEEEEchHhhhhCCHHHHHHHHHcCCCccccCCCCcccceEEeCHHHcCCCCeeEE
Confidence 99999999999965 56999999999999999999999999999999999999997 89999999999999999999999
Q ss_pred EecCcchhhhHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHcCCCcccccccccCCCCCCchhchhhHhhcCCC
Q 001056 1082 VNCSGVFRDLFINQMNLLDRAVKMVAELDEPEEQNYVRKHALEQAKALGIDVREAATRVFSNASGSYSSNINLAVENSSW 1161 (1171)
Q Consensus 1082 v~iSGiFRD~Fp~~i~LlD~Av~~aA~lDEp~e~N~Vrkh~~~~~~~~G~~~~~A~~RIFg~~pG~YGagV~~lVes~~W 1161 (1171)
|||||||||+|||+|+|||+||++||++|||+|+||||||+++. +.|++||||++||+|||||+++|++++|
T Consensus 841 vriSG~fRD~Fp~~i~LlD~Av~~vA~ldEp~e~N~v~~~~~~~--------~~a~~RIFg~~pG~YGaGv~~li~s~~W 912 (1122)
T TIGR02257 841 LRISGLFRDAFPNLIALVDKAVQAVAQLDEPDELNPLAARTRAE--------GRASPRIFGSKPGAYGAGLQELISSGDW 912 (1122)
T ss_pred EEechhHHHHHHHHHHHHHHHHHHHHhCCCCcccCHHHHhhhhh--------hccccceecCCCCchhhhHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999864 3689999999999999999999999999
Q ss_pred CChhhhhhh
Q 001056 1162 NDEKQLQTC 1170 (1171)
Q Consensus 1162 e~e~dLad~ 1170 (1171)
++++||||+
T Consensus 913 e~~~dLa~~ 921 (1122)
T TIGR02257 913 ETREDLAEA 921 (1122)
T ss_pred CCHHHHHHH
Confidence 999999986
No 9
>PRK12321 cobN cobaltochelatase subunit CobN; Reviewed
Probab=100.00 E-value=1.8e-228 Score=2117.08 Aligned_cols=853 Identities=27% Similarity=0.445 Sum_probs=746.1
Q ss_pred CcEEEEEEEcccchhHHHHHHHHHHHhhcCCceEEEEEeehhhccChhhHHHHHHHhhcCC-EEEEeccccHHHHHHHHH
Q 001056 75 PTVKIVYVVLEAQYQSALSAAVQALNQQVNYASYEVVGYLVEELRDVDTYKTFCKDLENAN-IFIGSLIFVEELALKIKA 153 (1171)
Q Consensus 75 ~~~~~v~v~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ad-~~~~sllf~~~~~~~~~~ 153 (1171)
++-.+|+++.-.+..+++++|.+....++| ++..+....+++|...+.+.+.+.++| +||..+|++.+...--.+
T Consensus 23 ~pA~~v~ls~~ds~l~~l~~a~~~~~~~~p----~lr~~~~~~l~~~~~~d~~~~~~~~~a~~v~v~llGg~~~w~yg~e 98 (1100)
T PRK12321 23 SPADLVVLSFSDSDLGALAAAWAAAGGGLP----SLRLANLAALRHPMSVDLYVEQVLAGAKAVLIRLLGGLDYWRYGLE 98 (1100)
T ss_pred CCcCEEEEEcCcchHHHHHHHHHhcccCCc----ceeecChhhcCCHHHHHHHHHHHhccCcEEEEEcCCCchhhHHHHH
Confidence 344588888888889999888863222333 556668888999998888877776666 999999987775221111
Q ss_pred HHHHhhcccCEEEeccChhhHhhhcccCcccccccCCCCchhHHHHHhhhccCCcHHHHHHHHHhCCCeeEEcCCCChhh
Q 001056 154 AVEKERDRLDAVLVFPSMPEVMRLNKLGSFSMSQLGQSKSPFFQLFKKKKQGAGFADSMLKLVRTLPKVLKYLPSDKAQD 233 (1171)
Q Consensus 154 ~~~~~~~~~~~~~~~~s~~~v~~~t~lG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lPg~~~~d 233 (1171)
++.++++..++.|.++||+..+|
T Consensus 99 ---------------------------------------------------------~~~~~~~~~~~~l~~l~g~~~~d 121 (1100)
T PRK12321 99 ---------------------------------------------------------RLAALARARGIALAVLPGDGRPD 121 (1100)
T ss_pred ---------------------------------------------------------HHHHHHHhcCCEEEEECCCCCcC
Confidence 11222222233333333333333
Q ss_pred HH----------HHHHHHHHHHcCCHHHHHHHHHHHHhccCccccCCCcCCCCcccccccccccCCCCCCcCCHHHHHHH
Q 001056 234 AR----------LYILSLQFWLGGSPDNLQNFLKMISGSYVPALRGQKIEYADPVLFLDTGIWHPLAPCMYDDVKEYLNW 303 (1171)
Q Consensus 234 ~~----------~~~~~~~Y~~~Gg~eN~~nll~~l~~~y~~~~~g~~~~~~~P~~~P~~GiyHP~~~~~f~~~~~Y~~W 303 (1171)
.+ .+..+++||.+||.+|++|||+||...|. +....++||+++|+.|||||+.+.++ ..+ .|
T Consensus 122 ~~l~~~st~~~~~~~~l~~Y~~~GG~~N~~~ll~~l~~~~~----~~~~~~~~p~~~p~~giyhp~~~~~~--~~~--~~ 193 (1100)
T PRK12321 122 PRLDALSTLPVSTLRRLDAYCRAGGPVNAQAALAQLALAAG----LYAGPVAPPKALPRGGFYCPGRGVVA--LPT--AC 193 (1100)
T ss_pred hhhHhcCCCCHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhC----CCCCCCCCCcccCCcceeCCCCcccc--ccc--cc
Confidence 33 34556999999999999999999987653 22223589999999999999965322 111 11
Q ss_pred hccCCCcccccCCCCCCeEEEEeeccccccCCChHHHHHHHHHHHCCCcEEEEEecCCCCchhhhHhhccccCCCcccee
Q 001056 304 YGTRKDTNEKLKGPDAPVIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMVNS 383 (1171)
Q Consensus 304 y~~~~~~~~~~~~~~~p~Vgil~yrs~~~~g~~~~~daLI~~LE~~G~~vipvf~~gl~~~~~v~~~f~~~~~~~~~VDa 383 (1171)
...++|+|||+|||+|+++||++++|+||++||++|+||+|||++|++. ....++|.+. .++..||+
T Consensus 194 -----------~~~~~p~vgilfyr~~~~~~~~~~idali~~Le~~G~~~ipvf~~~l~~-~~~~~~~~~~-~~~~~~d~ 260 (1100)
T PRK12321 194 -----------AGADAPLALVLFYRSYLLAADTAPVDALAAALRARGFAAVGLFVPSLKD-PEAAAWLRAA-LAALRPAA 260 (1100)
T ss_pred -----------cccCCCeEEEEEehhhhccCCcHHHHHHHHHHHHCCCEEEEEEeccccc-hhHHHHHHHh-ccCCCCCE
Confidence 1245799999999999999999999999999999999999999999874 2334444432 24567999
Q ss_pred eeecccccccCCCCCCCchhHHHHhhhCCCcEEeEecCCCCCHHHHhcCCCCCChhhhhhheeccccCcceeeEEEEEec
Q 001056 384 AISLTGFALVGGPARQDHPRAIEALRKLDVPYIVALPLVFQTTEEWLNSTLGLHPIQVALQVALPELDGGLEPIVFAGRD 463 (1171)
Q Consensus 384 vIn~tgFsL~ggpa~~~~~~~~~~L~~LnVPvl~ai~l~~qt~eeW~~s~~GL~p~~~~~~ValPElDG~I~piv~~g~~ 463 (1171)
|||+|+|++++.+ +.++|+++||||||++. +++|.++|++|++||+|.+++|+|+||||||+|+|+++++++
T Consensus 261 iin~t~F~~~~~~-------~~~~l~~l~vPVlq~i~-~~~~~e~W~~s~~GL~~~d~~~~ValPE~DG~I~~~~i~~k~ 332 (1100)
T PRK12321 261 IVNATAFSARGDD-------GASPLDAADCPVFQVAL-ATARRAAWAASERGLSPADLAMHVVLPEVDGRLFAGPISFKE 332 (1100)
T ss_pred EEecCcccCCCcc-------hhhHHHHCCCCEEEEec-CCCCHHHHHhCCCCCCHHHhhhheehhhcCceeeeEEEEeec
Confidence 9999999975421 34789999999999995 579999999999999999999999999999999999999864
Q ss_pred CC-----CC----ccccchHHHHHHHHHHHHHHHcccCCCCCceEEEEeecCCCCCCCccccCCCChHHHHHHHHHHHHH
Q 001056 464 PR-----TG----KAHALHKRVEQLCTRAIRWGELKRKTKAEKKLAITVFSFPPDKGNIGTAAYLNVFSSIFSVLKDLQR 534 (1171)
Q Consensus 464 ~~-----~~----~~~pipeRi~~la~r~~~W~~LR~kpn~eKKVAIil~nyPp~~g~iGtAa~LDv~~Sl~~iL~~Lk~ 534 (1171)
.. ++ .+.|+||||+++|+|+++|++||+|||+|||||||||||||+++|||+|+|||||+|+++||++||+
T Consensus 333 ~~~~d~~~~~~~~~~~pi~eRi~~~a~r~~~w~~Lr~k~n~eKrvAiil~nyP~~~~~ig~A~gLD~~~Sl~~iL~~L~~ 412 (1100)
T PRK12321 333 EAARDPDLGFSRFAHRPDPARIAAVADRAAAWVRLARTPRAERRLALVLSDYPGRGGRAAHAVGLDAPASARAILADLAA 412 (1100)
T ss_pred ccccCccccccccceeeCHHHHHHHHHHHHHHHHHccCChhhCEEEEEecCCCCCCCccceecCcCcHHHHHHHHHHHHH
Confidence 32 22 4689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHhccccccCCccccccccccHHHHhhhhH-----HHHHHHHHhCCCCCCCCCCCCeEEEee
Q 001056 535 DGYNVEGLPETSEALIEEIIHDKEAQFSSPNLNIAYKMGVREYQSLTP-----YATALEENWGKPPGNLNSDGENLLVYG 609 (1171)
Q Consensus 535 ~GY~vg~~P~~~~~L~~~il~~~~~~~~~~~~~~~~~~~~~~Y~~~~~-----~~~~i~~~WG~ppG~~~~~g~~~~I~G 609 (1171)
+|| |+++|+|+++|++.|+.. ...+|+++|++|+. .+++|+++||+|||++|+.++.|+|||
T Consensus 413 ~GY-v~~~p~~~~~L~~~l~~~------------~~~~~~~~Y~~wf~~LP~~~~~~v~~~WG~ppg~~~v~~g~~~ipg 479 (1100)
T PRK12321 413 AGY-ATGAPPDAAALAARLTTP------------RLSWPLADYRAALATLPEELRAALTAAWGAPEADPACRDGAFRFRA 479 (1100)
T ss_pred CCC-CCCCCCCHHHHHHHHHhc------------cccCCHHHHHHHHHhCCHHHHHHHHHHhCCCCCCccccCCeEEEEE
Confidence 999 999999999999999831 23589999999963 699999999999999999777899999
Q ss_pred eeeccEEEeeCCCCCCCCCccccccCCCCCCCchhHHHHHHHhhhcCccEEEEecCCCcCCCCCCCccCCCCCCcccccc
Q 001056 610 KQYGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYSFVEKIFKADAVLHFGTHGSLEFMPGKQVGMSDVCYPDSLI 689 (1171)
Q Consensus 610 ~~fGNVfIgvQP~RG~~~Dp~~lyHd~~lpP~HqYlAfY~WL~~~F~ADAviH~GtHGtLEwLPGK~vGLS~~cwPd~li 689 (1171)
++||||||+|||+|||++|++++|||+++||||||+|||+||+++ +|||||||||||||||||||++|||++||||+||
T Consensus 480 i~~GNv~v~~QP~RG~~~d~~~~yHd~~lpP~H~YlAfY~Wl~~~-~ADAiiH~GtHGtlEwLPGK~vgLS~~c~Pd~li 558 (1100)
T PRK12321 480 LRAGHLLVALQPDRGRRADRKADYHDPARPPRHAYVAFYLWLREV-GVDALIHLGAHGTLEWLPGKAVALSPACWPEALT 558 (1100)
T ss_pred EeECCEEEEcCCCcccCCCchHhhcCCCCCCChhHHHHHHHHhhc-CCCEEEECCCCcccccCCCccccCCcccChHHHh
Confidence 999999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCeeeEEecCCcchhhHHhhhccccccccCCCCCcCCCCchHHHHHHHHHHHHHhcc--CCCCchHHHHHHHHHHHHc
Q 001056 690 GNIPNVYYYAANNPSEATIAKRRSYANTISYLTPPAENAGLYKGLKQLSELISSYQSLK--DTGRGPQIVSSIISTAKQC 767 (1171)
Q Consensus 690 GdlPniY~YivnnPgEg~~AKRR~~AviIsHLtPP~~~AgLY~~L~eL~~li~eY~~~~--~~~~~~~l~~~I~~~a~~~ 767 (1171)
|+|||||||||||||||+||||||+|||||||||||++||||++|++|++||+||+++. ++.+++.+++.|+++++++
T Consensus 559 g~lP~iYpyivnnpgEg~qAKRR~~AviIdHLtPp~~~aglyg~l~~Le~li~eY~~a~~~d~~~~~~l~~~I~~~~~~~ 638 (1100)
T PRK12321 559 GALPVIYPFIVNDPGEAAQAKRRLGAVTLGHLPPPLAAAGLPPELARLERLVDEYSTADGLDPRRRDRLARAIRDEARAA 638 (1100)
T ss_pred CCCCEEEEEECCCcchHHHHHhcccceecccCCCCCccccCcHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999864 5667889999999999999
Q ss_pred CCcccCCCCcccccCChHHHhHHHHHHHHHHHHHHhccCCCCceecccCCChHHHHHHHHHHHhcCCCcccccchhHHHH
Q 001056 768 NLDKDVELPDEGAEISAKERDLVVGKVYSKIMEIESRLLPCGLHVIGEPPSALEAVATLVNIAALDRPEDEIASLPSILA 847 (1171)
Q Consensus 768 ~L~~dl~~~~~~~~~~~~~~d~~v~~l~~yL~el~~~~ip~GLHv~G~~p~~e~~~~~l~~~~~~~r~~~~~~sL~~~la 847 (1171)
||++|++++.. +++++++++||+||||||+++||+||||||++|+++++ .+
T Consensus 639 ~L~~dl~~~~~------~~~~~~l~~l~~yL~elk~~~i~~GLHvfG~~p~~~~~-----~~------------------ 689 (1100)
T PRK12321 639 GLEADAGLDAD------TPPAEALTRIDAFLCDLKESQFRDGLHVFGRAPAGAAE-----PV------------------ 689 (1100)
T ss_pred CCchhcCCCCc------cCHHHHHHHHHHHHHHHHhhhcCCCCeecCCCCChHHH-----Hh------------------
Confidence 99999987542 34788999999999999999999999999999998864 00
Q ss_pred HHhCCChhhhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHhhccccCCchHHHHHHHHhhhccCCCchhhhhhccccccc
Q 001056 848 ETVGRDIEDIYRGSDKGILKDVELLRQITEASRGAISAFVEKTTNKKGQVVDVADKLSSILGFGINEPWIQYLSNTKFYR 927 (1171)
Q Consensus 848 ~~~g~~~~~l~~~~~~~~~~~~~ll~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 927 (1171)
.
T Consensus 690 ---------------------------------------~---------------------------------------- 690 (1100)
T PRK12321 690 ---------------------------------------R---------------------------------------- 690 (1100)
T ss_pred ---------------------------------------h----------------------------------------
Confidence 0
Q ss_pred ccHHHHHHHHHHHHHHHhhhccchhHHHHHhhhCCCccCCCCCCCCCCC-CCCCCCCCcccccCCCCCCCHHHHHHHHHH
Q 001056 928 ADRATLRTLFEFVGECLKLVVADNELGSLKQALEGKYVEPGPGGDPIRN-PKVLPTGKNIHALDPQAIPTTAAMQSAKVV 1006 (1171)
Q Consensus 928 ~~~~~l~~~~~~l~~~~~~~~~~~El~~LL~aL~G~YI~PgpgGdp~R~-pdvLPTGRNfys~DP~~iPT~aAw~~G~~l 1006 (1171)
.++++|+++||+||+|+||||||||||+|| |||||||||||+|||++|||++||++|+++
T Consensus 691 -------------------~~~~~E~~~ll~aL~G~yV~pGp~G~P~Rg~~dvLPTGRNfys~Dp~~iPT~aAw~~G~~l 751 (1100)
T PRK12321 691 -------------------ASAEAERAALLAALDGRRVAPGPAGSPSRGRSDVLPTGRNLFTVDPRAVPTRAAHALGVKA 751 (1100)
T ss_pred -------------------hccHHHHHHHHHHhCCceeCCCCCCCcccCCCCCCCCCCcccCcCcccCCCHHHHHHHHHH
Confidence 012479999999999999999999999998 999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCceEEEEEEecccccccChhHHHHHHHhCCeeccCC-CCCceeeEEecccccCCCceeEEEecC
Q 001056 1007 VDRLIERQKVDNGGKYPETVALVLWGTDNIKTYGESLAQVLWMIGVRPVSDT-FGRVNRVEPVSLEELGRPRIDVVVNCS 1085 (1171)
Q Consensus 1007 A~~lL~~y~~e~~G~yPe~va~vLWgtdtmrt~Ge~iAqiL~LlGvrPvwd~-~GrV~g~ElIPL~ELgRPRIDVvv~iS 1085 (1171)
||+||++|+ ++||+|||+|||+||||+||||+|++|||||||||||||||. +|||+|+|||||+||||||||||||||
T Consensus 752 Ae~ll~~y~-~e~G~yPe~va~~lWgt~tmRt~G~~iAqiL~LlGVrPvwd~~~grV~g~eiIPl~eLgRPRIDVtvriS 830 (1100)
T PRK12321 752 AEELLRRHL-QDHGDWPRGLVMDLWGSATLRTGGEEFAMALALMGVRPVWDHASGRVTGIEVLPLALLDRPRIDVTLRVS 830 (1100)
T ss_pred HHHHHHHHH-HhcCCCCceEEEEEEchHhhhhCCHHHHHHHHHcCCcccccCCCCcccceEEeCHHHcCCCCeeEEEEec
Confidence 999999996 456999999999999999999999999999999999999995 899999999999999999999999999
Q ss_pred cchhhhHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHcCCCcccccccccCCCCCCchhchhhHhhcCCCCChh
Q 001056 1086 GVFRDLFINQMNLLDRAVKMVAELDEPEEQNYVRKHALEQAKALGIDVREAATRVFSNASGSYSSNINLAVENSSWNDEK 1165 (1171)
Q Consensus 1086 GiFRD~Fp~~i~LlD~Av~~aA~lDEp~e~N~Vrkh~~~~~~~~G~~~~~A~~RIFg~~pG~YGagV~~lVes~~We~e~ 1165 (1171)
|||||+|||+|+|||+||++||++|||+|+|||||| .+.|++||||++||+|||||+++|++++|++++
T Consensus 831 G~FRD~Fp~~i~LlD~Av~~vA~ldEp~e~N~vr~h-----------~~~a~~RIFg~~pG~YGaGv~~li~s~~W~~~~ 899 (1100)
T PRK12321 831 GLFRDVFPALIALFDQAARAVAAREEADEDNPLAAR-----------RGERAARVFGPAPGSYGAGAAELALDGAWEARA 899 (1100)
T ss_pred chHHhhHHHHHHHHHHHHHHHHhCCCCcccCHHhhh-----------hccCccceecCCCCchhhhHHHHHhcCCCCCHH
Confidence 999999999999999999999999999999999999 146899999999999999999999999999999
Q ss_pred hhhhh
Q 001056 1166 QLQTC 1170 (1171)
Q Consensus 1166 dLad~ 1170 (1171)
||||+
T Consensus 900 dLa~~ 904 (1100)
T PRK12321 900 ELGEA 904 (1100)
T ss_pred HHHHH
Confidence 99986
No 10
>COG1429 CobN Cobalamin biosynthesis protein CobN and related Mg-chelatases [Coenzyme metabolism]
Probab=100.00 E-value=3.4e-221 Score=2091.01 Aligned_cols=996 Identities=39% Similarity=0.631 Sum_probs=821.2
Q ss_pred CCCCCcEEEEEEEcccchhHHHHHHHHHHHhhcCCceEEEEEeehhhccChhhHHHHHHHhhcCCEEEEeccccHHHHHH
Q 001056 71 RDNLPTVKIVYVVLEAQYQSALSAAVQALNQQVNYASYEVVGYLVEELRDVDTYKTFCKDLENANIFIGSLIFVEELALK 150 (1171)
Q Consensus 71 ~~~~~~~~~v~v~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ad~~~~sllf~~~~~~~ 150 (1171)
......+++|+++....+...+..|...+..+...+......+..+ +.. +...+..+|+|+..++.....-.-
T Consensus 17 ~~~~~~~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~vi~~~~~~~~~~~~~ 89 (1388)
T COG1429 17 VSPQVPIKVVILSASSSDLLALAAAARFLPIDLISLDSLILGALQE----EVS---LERVLSAADVILLRLLGGTSYWPY 89 (1388)
T ss_pred hcccCceEEEEEcCchhhHHHHHHhhhhhcccccchhhhhcccccc----ccc---hhhhhccCcEEEEecCCcchhhhh
Confidence 3445678899999999999999999999988766544433222112 211 778889999999999997655443
Q ss_pred HHHHHHHhhcccCEEEeccChhhHhhhcccCcccccccCCCCchhHHHHHhhhccCCcHHHHHHHHHhCCCeeEEcCCCC
Q 001056 151 IKAAVEKERDRLDAVLVFPSMPEVMRLNKLGSFSMSQLGQSKSPFFQLFKKKKQGAGFADSMLKLVRTLPKVLKYLPSDK 230 (1171)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~s~~~v~~~t~lG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lPg~~ 230 (1171)
-.+.+++. .+ ..++. ... ...++ .. +..+ .
T Consensus 90 ~~~~~~a~-~~-~~~i~--~~~---------~~~~~-----~~-----------------------------~~~~---~ 119 (1388)
T COG1429 90 GLELLAAL-AN-GFVIP--GDG---------VLPMD-----PE-----------------------------LKSL---S 119 (1388)
T ss_pred hhHHHHHh-cc-CcEec--ccc---------ccCCC-----cc-----------------------------cccc---c
Confidence 44444443 11 01111 110 00000 00 0000 1
Q ss_pred hhhHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCccccCCCcCCCCcccccccccccCCCCCCcCCHHHHHHHhccCCCc
Q 001056 231 AQDARLYILSLQFWLGGSPDNLQNFLKMISGSYVPALRGQKIEYADPVLFLDTGIWHPLAPCMYDDVKEYLNWYGTRKDT 310 (1171)
Q Consensus 231 ~~d~~~~~~~~~Y~~~Gg~eN~~nll~~l~~~y~~~~~g~~~~~~~P~~~P~~GiyHP~~~~~f~~~~~Y~~Wy~~~~~~ 310 (1171)
--|.+++...+.||.+||.+|++||+.|+++.|.....+....+.+|...|..|||||+++.+|+++.+|++||..
T Consensus 120 t~~~~~~~~~~~y~~~gg~~N~~~ll~~l~~~~~~~~~~~~~~~~~p~~~~~~giyhP~~~~~~~~~~~yl~wy~~---- 195 (1388)
T COG1429 120 TVDAEDYLRVYLYLSGGGVENLRNLLLYLADLYDDLADGIDYAYIEPVRPPKEGIYHPDAGEIFENLREYLDWYIN---- 195 (1388)
T ss_pred CcCHHHHhHHhhhhccCCcccHHHHHHHHHHhhcccccccccCccCcccCccceEEcCCCccccccHHHHHHHHhh----
Confidence 1127788889999999999999999999999776434455667778887777999999999999999999999975
Q ss_pred ccccCCCCCCeEEEEeeccccccCCChHHHHHHHHHHHCCCcEEEEEecCCCCchhhhHhhccccCCCccceeeeecccc
Q 001056 311 NEKLKGPDAPVIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISLTGF 390 (1171)
Q Consensus 311 ~~~~~~~~~p~Vgil~yrs~~~~g~~~~~daLI~~LE~~G~~vipvf~~gl~~~~~v~~~f~~~~~~~~~VDavIn~tgF 390 (1171)
+.+++.+|||||+|||+|+.++|++++|+||++||+||+||||+|+.+.+.......+|.. ++++.||+|||+++|
T Consensus 196 --~~~~~~~ptVgi~~~r~~~~~~~~~~idaLi~~le~rG~nvi~~f~~~~~~~~~~~~~~~~--~~~~~vdaii~l~~f 271 (1388)
T COG1429 196 --GFYDPGAPTVGILFYRTYYTNGNLAPIDALIRALEERGLNVIPVFLSSDALYVVLRAFFLG--LEKVLVDAIISLTGF 271 (1388)
T ss_pred --cccCCCCCEEEEEeeeeeeeccccHHHHHHHHHHHHCCCeeEEEEeecCCchhHHHHhhcc--ccccccceeeeehhh
Confidence 2368999999999999999999999999999999999999999999988643444555554 567889999999999
Q ss_pred cccCCCCCCCchhHHHHhhhCCCcEEeEecCCCCCHHHHhcCCCCCChhhhhhheeccccCcceeeEEEEEecCCC-C--
Q 001056 391 ALVGGPARQDHPRAIEALRKLDVPYIVALPLVFQTTEEWLNSTLGLHPIQVALQVALPELDGGLEPIVFAGRDPRT-G-- 467 (1171)
Q Consensus 391 sL~ggpa~~~~~~~~~~L~~LnVPvl~ai~l~~qt~eeW~~s~~GL~p~~~~~~ValPElDG~I~piv~~g~~~~~-~-- 467 (1171)
++++.+.+ ... .++|++|||||||+++++++++++|+.+..|+++.+++|+|+|||+||+|+|++||+++... |
T Consensus 272 ~l~~~~~~-~~~--~~l~~~lnVPVl~~i~~~~~~~~~w~~~~~g~~~~~~~~~valPE~dG~i~~i~I~~~~~~~~~~~ 348 (1388)
T COG1429 272 ALNGSPPR-GAV--EELLKRLNVPVLQAVVSSGTYREQWEESDSGLGPADVAYQVALPELDGRIEPIPIGGKEKRDDGTE 348 (1388)
T ss_pred hcCCCCcc-cch--hHHHHHcCCCEEEEEeccCccchHhhhhccCCChHHHHHhhccccccceeEEEEEeeeeccCCCcc
Confidence 99887764 222 26999999999999988888999999999999999999999999999999999999986543 2
Q ss_pred --ccccchHHHHHHHHHHHHHHHcccCCCCCceEEEEeecCCCCCCCccccCCCChHHHHHHHHHHHHHCCCCCCCCCCC
Q 001056 468 --KAHALHKRVEQLCTRAIRWGELKRKTKAEKKLAITVFSFPPDKGNIGTAAYLNVFSSIFSVLKDLQRDGYNVEGLPET 545 (1171)
Q Consensus 468 --~~~pipeRi~~la~r~~~W~~LR~kpn~eKKVAIil~nyPp~~g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~vg~~P~~ 545 (1171)
.+.||||||+++|+|+.+|++||+|||+||||||||||||||++|||+|+|||||+|+.+||++||++||+|+++|.+
T Consensus 349 ~~~~~pi~erie~la~r~~~w~~Lr~~pn~eKkVAii~ynyppgk~~iG~AsyLDvp~Sl~~iL~~L~~~GY~v~~iP~~ 428 (1388)
T COG1429 349 VEAYVPIPERIEWLADRAIRWARLRRKPNAEKKVAIIYYNYPPGKDNIGTASYLDVPASLVNLLAALREEGYRVGNIPAN 428 (1388)
T ss_pred eeEeeccHHHHHHHHHHHHHHHHHhcCCcccCeEEEEEccCCCCCCccccccccCCHHHHHHHHHHHHHCCCcCCCCCcc
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcc--ccccCCccc------cccccccHHHHhhhh-----HHHHHHHHHhCCCCCCCCCCCC---eEEEee
Q 001056 546 SEALIEEIIHDK--EAQFSSPNL------NIAYKMGVREYQSLT-----PYATALEENWGKPPGNLNSDGE---NLLVYG 609 (1171)
Q Consensus 546 ~~~L~~~il~~~--~~~~~~~~~------~~~~~~~~~~Y~~~~-----~~~~~i~~~WG~ppG~~~~~g~---~~~I~G 609 (1171)
+++|++.++... ...|..... .....+|+++|.+|+ +.++++++.||+|||++|+.++ +|+|||
T Consensus 429 ~~el~~~l~~~~~n~~~~~~~~le~~~~~~~~~~vp~~~Y~eWf~~L~~~~~~~~~~~WG~~pG~~m~~~~~~k~~vIpg 508 (1388)
T COG1429 429 GDELIRELIRRGINVGAWAPGELEKLAENGVVDLVPLDEYLEWFSSLPEELRQRVVEEWGEPPGDIMVVEGEGKYFVIPG 508 (1388)
T ss_pred hhHHHHHHHHHhhccccccccccchhccccceeeecHHHHHHHHHhCCHHHHHHHHHhhCCCCCCCceecCCccEEEEee
Confidence 999999988653 345655432 124589999999997 3789999999999999998665 899999
Q ss_pred eeeccEEEeeCCCCCCCCCccccccCCCCCCCchhHHHHHHHhhhcCccEEEEecCCCcCCCCCCCccCCCCCCcccccc
Q 001056 610 KQYGNVFIGVQPTFGYEGDPMRLLFSKSASPHHGFAAYYSFVEKIFKADAVLHFGTHGSLEFMPGKQVGMSDVCYPDSLI 689 (1171)
Q Consensus 610 ~~fGNVfIgvQP~RG~~~Dp~~lyHd~~lpP~HqYlAfY~WL~~~F~ADAviH~GtHGtLEwLPGK~vGLS~~cwPd~li 689 (1171)
++||||||+|||+|||.+||+.+|||+++||||||+|||+||+++|+|||||||||||||||||||++|||+.|||++||
T Consensus 509 ~~fGNV~v~pQP~RG~~~d~~~~YHs~~lPP~HqYlAfY~wL~~~f~ADAvVHvGtHGTlEWLPGK~vgLs~~d~P~ill 588 (1388)
T COG1429 509 IRFGNVFVGPQPPRGWLGDESALYHSPDLPPTHQYLAFYYWLRRVFGADAVVHVGTHGTLEWLPGKEVGLSREDFPDILL 588 (1388)
T ss_pred eeeccEEEEcCCCcccCCChhhhccCCCCCCchhHHHHHHHHHhhcCCCeEEEccCccCcccCCCccccCChhhchHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeEEecCCcchhhHHhhhccccccccCCCCCcCCCCchHHHHHHHHHHHHHhcc-CCCCchHHHHHHHHHHHHcC
Q 001056 690 GNIPNVYYYAANNPSEATIAKRRSYANTISYLTPPAENAGLYKGLKQLSELISSYQSLK-DTGRGPQIVSSIISTAKQCN 768 (1171)
Q Consensus 690 GdlPniY~YivnnPgEg~~AKRR~~AviIsHLtPP~~~AgLY~~L~eL~~li~eY~~~~-~~~~~~~l~~~I~~~a~~~~ 768 (1171)
|||||||||||||||||+||||||+|||||||||||++||||++|++|++||++|+++. |+.+++.+++.|+++++++|
T Consensus 589 gdlP~iYpYiv~npgEg~~AKRR~~AviIdHLtPp~~~a~lYg~l~~L~~li~~Y~~~~~d~~~~~~l~~~I~~~~~~~~ 668 (1388)
T COG1429 589 GDLPNIYPYIVDNPGEGTQAKRRGYAVIIDHLTPPLVRAGLYGDLEELEELIEEYLQAEGDPSRREALREAILELVRELG 668 (1388)
T ss_pred CCCCeEEEEecCCcchhHHhhhccCceecccCCCCccccccchhHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999975 77889999999999999999
Q ss_pred CcccCCCCcccccCChHHHhHHHHHHHHHHHHHHhccCCCCceecccCCChHHHHHHHHHHHhcCCCcccccchhHHHHH
Q 001056 769 LDKDVELPDEGAEISAKERDLVVGKVYSKIMEIESRLLPCGLHVIGEPPSALEAVATLVNIAALDRPEDEIASLPSILAE 848 (1171)
Q Consensus 769 L~~dl~~~~~~~~~~~~~~d~~v~~l~~yL~el~~~~ip~GLHv~G~~p~~e~~~~~l~~~~~~~r~~~~~~sL~~~la~ 848 (1171)
|+.|++... ..+++.||.++++||+|||+||+++||+||||||++|++|++++++.+|++ .+|.++++.
T Consensus 669 L~~dl~~~~---~~~~e~~d~~~~~lh~yL~el~~~~ip~GLHv~G~~p~~e~~~~~~~~i~r--------~~l~~~v~~ 737 (1388)
T COG1429 669 LDEDLGEGI---SEKDEFFDELLEKLHDYLHELEEELIPYGLHVFGEPPSGEELVDTVAEIAR--------KSLLAMVAG 737 (1388)
T ss_pred chhhhcccc---cccchhHHHHHHHHHHHHHHHHhhhcCCceeeccCCCCcchhhhHHHHHHH--------HHHHHHHHH
Confidence 999986111 112344899999999999999999999999999999999999999998877 578899999
Q ss_pred HhCCChhhhhcCCCC-CcccHHHHHHHHHHHHHHHHHHHHhhccccCCchHHHHHHHHhhhccCCCchhhhhhccccccc
Q 001056 849 TVGRDIEDIYRGSDK-GILKDVELLRQITEASRGAISAFVEKTTNKKGQVVDVADKLSSILGFGINEPWIQYLSNTKFYR 927 (1171)
Q Consensus 849 ~~g~~~~~l~~~~~~-~~~~~~~ll~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 927 (1171)
.+|.++++-...... ......... .....+.......+. .+...+..+.+. ++ ... .
T Consensus 738 ~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~q~~~--~~--~~~------------~ 795 (1388)
T COG1429 738 MLGLDFDPDYAVLVSEVGATPLRTL-AEDTVALDLLTEVIL-----EGGLVEAAQLLL--LG--TSP------------V 795 (1388)
T ss_pred HcCcccccchhhhhhhccccccccc-cchhHHHhhhHHHHh-----cCccHHHHHHHh--cc--CCc------------c
Confidence 999883321000000 000000000 000001111111111 111111111110 00 000 0
Q ss_pred ccHHHHHHHHHHHHHHHh--hhccchhHHHHHhhhCCCccCCCCCCCCCCCCCCCCCCCcccccCCCCCCCHHHHHHHHH
Q 001056 928 ADRATLRTLFEFVGECLK--LVVADNELGSLKQALEGKYVEPGPGGDPIRNPKVLPTGKNIHALDPQAIPTTAAMQSAKV 1005 (1171)
Q Consensus 928 ~~~~~l~~~~~~l~~~~~--~~~~~~El~~LL~aL~G~YI~PgpgGdp~R~pdvLPTGRNfys~DP~~iPT~aAw~~G~~ 1005 (1171)
.+.+............ ..+++.||++||+||+|+||||||||||+|||||||||||||+|||++|||++||++|++
T Consensus 796 --~~~~~~~~~~~~~~~~~l~~s~~~Ei~~lL~aL~G~yIppgp~GdP~r~pdvLPTGRNfy~~Dpr~iPT~aAw~~G~~ 873 (1388)
T COG1429 796 --VATLPELLELAEEYAPLLLESADNEIENLLRALDGGYIPPGPGGDPVRNPDVLPTGRNFYALDPRLIPTEAAWELGKE 873 (1388)
T ss_pred --cchhhHHHHHHHHHHHhhhcccHHHHHHHHHHhcCCCCCCCCCCCcccCCCcCCCCCcccccCcccCCCHHHHHHHHH
Confidence 0111111111111111 223588999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCceEEEEEEecccccccChhHHHHHHHhCCeeccCCCCCceeeEEecccccCCCceeEEEecC
Q 001056 1006 VVDRLIERQKVDNGGKYPETVALVLWGTDNIKTYGESLAQVLWMIGVRPVSDTFGRVNRVEPVSLEELGRPRIDVVVNCS 1085 (1171)
Q Consensus 1006 lA~~lL~~y~~e~~G~yPe~va~vLWgtdtmrt~Ge~iAqiL~LlGvrPvwd~~GrV~g~ElIPL~ELgRPRIDVvv~iS 1085 (1171)
+||++|++|+ ++||+|||+||++||||+||||+|++|||||||||||||||+.|||+|+|+||++||||||||||+++|
T Consensus 874 lad~lL~~y~-~~~g~yPe~va~vlwg~~t~rt~G~~iaqiL~LlGV~Pvwd~~grV~gveviPl~eL~RPRIDV~v~~S 952 (1388)
T COG1429 874 LADLLLERYL-AEHGRYPEKVAVVLWGTETMRTGGEDIAQVLYLLGVRPVWDAGGRVTGVEVIPLEELGRPRIDVVVRIS 952 (1388)
T ss_pred HHHHHHHHHH-HHhCCCCceeEEEEEehhhhhcCChhHHHHHHHcCCeeeecCCCcccceEecCHHHcCCCceeEEEEee
Confidence 9999999996 557999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred cchhhhHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHH---cCCCc----ccccccccCCCCCCchhchhhHhhc
Q 001056 1086 GVFRDLFINQMNLLDRAVKMVAELDEPEEQNYVRKHALEQAKA---LGIDV----REAATRVFSNASGSYSSNINLAVEN 1158 (1171)
Q Consensus 1086 GiFRD~Fp~~i~LlD~Av~~aA~lDEp~e~N~Vrkh~~~~~~~---~G~~~----~~A~~RIFg~~pG~YGagV~~lVes 1158 (1171)
|+|||+||++|+|||+||++||+||||.++||||||+++..++ .|++. +.|++||||++||+||+||+.+|++
T Consensus 953 G~fRD~fp~~i~lld~Av~~va~ldE~~~~N~vrkh~~~~~~~l~~~g~~~~~a~~~A~~RiF~~~pG~Yg~Gv~~~v~~ 1032 (1388)
T COG1429 953 GLFRDAFPNQIELLDEAVRLAAALDEPPEMNYVRKHSLALKEELLERGLNEEGAERLALTRIFGPPPGTYGAGVNDAVEA 1032 (1388)
T ss_pred cccccccHHHHHHHHHHHHHHhhCCCCccccHHHHHHHHHHHHHHhccCCcchhhhhhhhhhccCCCCcccccHHHHHhh
Confidence 9999999999999999999999999999999999999987653 46664 4578999999999999999999998
Q ss_pred CC-CCChhhhhhh
Q 001056 1159 SS-WNDEKQLQTC 1170 (1171)
Q Consensus 1159 ~~-We~e~dLad~ 1170 (1171)
+. |++++||||+
T Consensus 1033 s~~We~~~~LA~~ 1045 (1388)
T COG1429 1033 SWTWEDREELAEV 1045 (1388)
T ss_pred cCCcCCHHHHHHH
Confidence 86 9999999986
No 11
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=100.00 E-value=4.2e-36 Score=307.56 Aligned_cols=157 Identities=36% Similarity=0.569 Sum_probs=141.9
Q ss_pred EEEEEEEcccchhHHHHHHHHHHHhh-cCCceEEEEEeehhhccChhhHHHHHHHhhcCCEEEEeccccHHHHHHHHHHH
Q 001056 77 VKIVYVVLEAQYQSALSAAVQALNQQ-VNYASYEVVGYLVEELRDVDTYKTFCKDLENANIFIGSLIFVEELALKIKAAV 155 (1171)
Q Consensus 77 ~~~v~v~~~~~~~~~~~~a~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ad~~~~sllf~~~~~~~~~~~~ 155 (1171)
|||||||+++||++++++|++.|+++ .|+++|++|+ ..+|.+||++|++|++||++|||||+||||+|||++||.++|
T Consensus 1 ~r~V~vtld~~~~~al~~aa~~l~~~~~p~l~l~~~~-~~el~~~~~~~~~~~~aia~ADii~~smlF~ed~v~~l~~~L 79 (164)
T PF11965_consen 1 MRFVIVTLDEHYNSALYRAAARLNRDHCPGLELSVFA-AAELERDPEALEECEAAIARADIIFGSMLFIEDHVRPLLPAL 79 (164)
T ss_pred CEEEEEeCchhhhHHHHHHHHHHhhccCCCeEEEEEe-HHHhhcChHHHHHHHHHHHhCCEEEeehhhhHHHHHHHHHHH
Confidence 69999999999999999999999999 7766555554 555669999999999999999999999999999999999999
Q ss_pred HHhhcccCEEEeccChhhHhhhcccCcccccccCCCCchhHHHHHhhh------ccCCcHHHHHHHHHhCCCeeEEcCCC
Q 001056 156 EKERDRLDAVLVFPSMPEVMRLNKLGSFSMSQLGQSKSPFFQLFKKKK------QGAGFADSMLKLVRTLPKVLKYLPSD 229 (1171)
Q Consensus 156 ~~~~~~~~~~~~~~s~~~v~~~t~lG~f~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~lPg~ 229 (1171)
+++|++||+++||+|+||||++||||+|+|+ ++++.++.++|+.+ +++++.++||+++|++||+||||| +
T Consensus 80 ~~~r~~~~a~i~~~sapelm~lTrlG~f~m~---~~~~g~~~~lKkl~~~~~~~~~~~~~~~qm~llr~lpkiLkfIP-g 155 (164)
T PF11965_consen 80 EARRDHCPAMIIFESAPELMRLTRLGKFSMG---GEKSGPPALLKKLRGKLKKGRGEDAGAGQMKLLRRLPKILKFIP-G 155 (164)
T ss_pred HHHHccCCEEEEEcCHHHHHHHhcccceecC---CCCcchHHHHHHHHhhccCCCCCChHHhHHHHHHHhhHHhhhCC-c
Confidence 9999999999999999999999999999994 45555677888743 456889999999999999999999 6
Q ss_pred ChhhHHHHH
Q 001056 230 KAQDARLYI 238 (1171)
Q Consensus 230 ~~~d~~~~~ 238 (1171)
|+||+|+|+
T Consensus 156 kAqDlr~~~ 164 (164)
T PF11965_consen 156 KAQDLRAWF 164 (164)
T ss_pred hHHHHHhhC
Confidence 999999995
No 12
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=75.20 E-value=27 Score=42.40 Aligned_cols=87 Identities=16% Similarity=0.170 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHC--CCcEEEEEecCCCCc------hhhh---HhhccccCCCccceeeeecccccccCCCCCCCchhHHH
Q 001056 338 HYVAVIMELEAR--GAKVIPIFAGGLDFA------GPVE---RFFVDPVMKKPMVNSAISLTGFALVGGPARQDHPRAIE 406 (1171)
Q Consensus 338 ~~daLI~~LE~~--G~~vipvf~~gl~~~------~~v~---~~f~~~~~~~~~VDavIn~tgFsL~ggpa~~~~~~~~~ 406 (1171)
.+++++++++++ |+.|++|-+.|+..+ ..++ +++.. ...... -||+.|+-- + .+..+-..
T Consensus 115 Di~~v~~e~~~~~~~~pvv~v~t~Gf~g~~~~G~~~~~~alv~~~~~---~~~~~~-~VniiG~~~---~--~d~~el~~ 185 (427)
T PRK02842 115 DLEGLAERLSTEFAGVPVLNYSGSGLETTFTQGEDAVLAALVPFCPE---APADHP-SLVLVGSLA---D--VVEDQLTL 185 (427)
T ss_pred CHHHHHHHhhcccCCCeEEEeeCCCccccHHHHHHHHHHHHhhhccc---ccCCCC-cEEEEEeCC---c--chHHHHHH
Confidence 578899999888 888888888887532 1122 12211 111112 236666521 2 22345668
Q ss_pred HhhhCCCcEEeEecCCCCCHHHHhcCCCC
Q 001056 407 ALRKLDVPYIVALPLVFQTTEEWLNSTLG 435 (1171)
Q Consensus 407 ~L~~LnVPvl~ai~l~~qt~eeW~~s~~G 435 (1171)
+|+++++.+...+| ..+.+++..-..|
T Consensus 186 lL~~~Gi~v~~~lp--~~~~~d~~~~~~~ 212 (427)
T PRK02842 186 EFKKLGIGVVGFLP--ARRFTELPAIGPG 212 (427)
T ss_pred HHHHcCCeeEEEeC--CccHHHHhhcCcC
Confidence 99999999976665 3677888776554
No 13
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=62.51 E-value=72 Score=38.76 Aligned_cols=92 Identities=14% Similarity=0.114 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHC-CCcEEEEEecCCCC-ch---------hhhHhhccccCCCccceeeeecccccccCCCCCCCchhHH
Q 001056 337 SHYVAVIMELEAR-GAKVIPIFAGGLDF-AG---------PVERFFVDPVMKKPMVNSAISLTGFALVGGPARQDHPRAI 405 (1171)
Q Consensus 337 ~~~daLI~~LE~~-G~~vipvf~~gl~~-~~---------~v~~~f~~~~~~~~~VDavIn~tgFsL~ggpa~~~~~~~~ 405 (1171)
+.+++++++++++ |+.|+||-+.|+.. .. .+-+.+...........--||+.|..... .|..+-.
T Consensus 116 dDi~~v~~~~~~~~~~pvi~v~t~gf~g~s~~~G~~~a~~ai~~~l~~~~~~~~~~~~~VNiiG~~~~~----~d~~el~ 191 (421)
T cd01976 116 DDIEAVARKASKELGIPVVPVRCEGFRGVSQSLGHHIANDAIRDHILGKRNEFEPTPYDVNIIGDYNIG----GDAWASR 191 (421)
T ss_pred cCHHHHHHHHHHhhCCCEEEEeCCCccCCcccHHHHHHHHHHHHHHhccCCccCCCCCeEEEEecCCCC----ccHHHHH
Confidence 3577888888744 88999998888643 11 22233332110011112346765522211 2445567
Q ss_pred HHhhhCCCcEEeEecCCCCCHHHHhcCC
Q 001056 406 EALRKLDVPYIVALPLVFQTTEEWLNST 433 (1171)
Q Consensus 406 ~~L~~LnVPvl~ai~l~~qt~eeW~~s~ 433 (1171)
.+|++++++|..-++ ...+.++++..+
T Consensus 192 ~lL~~~Gi~v~~~~~-~~~t~eei~~~~ 218 (421)
T cd01976 192 ILLEEMGLRVVAQWS-GDGTLNEMENAH 218 (421)
T ss_pred HHHHHcCCeEEEEeC-CCCCHHHHHhcc
Confidence 899999999986664 567899999864
No 14
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=62.26 E-value=63 Score=39.88 Aligned_cols=105 Identities=13% Similarity=0.076 Sum_probs=60.9
Q ss_pred eEEEEeeccccccCCChHHHHHHHHHHH-CCCcEEEEEecCCCCc------hhhh---HhhccccCCCccceeeeecccc
Q 001056 321 VIGLILQRSHIVTGDDSHYVAVIMELEA-RGAKVIPIFAGGLDFA------GPVE---RFFVDPVMKKPMVNSAISLTGF 390 (1171)
Q Consensus 321 ~Vgil~yrs~~~~g~~~~~daLI~~LE~-~G~~vipvf~~gl~~~------~~v~---~~f~~~~~~~~~VDavIn~tgF 390 (1171)
.|+|+.--..-+-| ..++++++++++ .|..++||-+.|+... .+++ +.|...........--||+.|.
T Consensus 122 ~I~V~tTC~~~lIG--dDi~~v~~~~~~~~~~pvi~v~t~Gf~g~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiiG~ 199 (475)
T PRK14478 122 AVFVYQTCVVALIG--DDIDAVCKRAAEKFGIPVIPVNSPGFVGNKNLGNKLAGEALLDHVIGTVEPEDTTPYDINILGE 199 (475)
T ss_pred EEEEeCCChHHHhc--cCHHHHHHHHHHhhCCCEEEEECCCcccchhhhHHHHHHHHHHHHhccCCccCCCCCeEEEEeC
Confidence 45555433333333 357889998885 4999999988776532 1122 2233211111112345676653
Q ss_pred cccCCCCCCCchhHHHHhhhCCCcEEeEecCCCCCHHHHhcC
Q 001056 391 ALVGGPARQDHPRAIEALRKLDVPYIVALPLVFQTTEEWLNS 432 (1171)
Q Consensus 391 sL~ggpa~~~~~~~~~~L~~LnVPvl~ai~l~~qt~eeW~~s 432 (1171)
.... ++..+-..+|+++++.|..-++ ...+.++++..
T Consensus 200 ~~~~----gd~~elk~lL~~~Gl~v~~~~~-~~~s~eei~~~ 236 (475)
T PRK14478 200 YNLA----GELWQVKPLLDRLGIRVVACIT-GDARYDDVASA 236 (475)
T ss_pred CCCC----CCHHHHHHHHHHcCCeEEEEcC-CCCCHHHHHhc
Confidence 2211 2445567899999999996554 45689999975
No 15
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=61.76 E-value=81 Score=38.29 Aligned_cols=94 Identities=17% Similarity=0.186 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHC-CCcEEEEEecCCCC-c------hhhh---HhhccccCCCccceeeeecccccccCCCC-CCCchhHH
Q 001056 338 HYVAVIMELEAR-GAKVIPIFAGGLDF-A------GPVE---RFFVDPVMKKPMVNSAISLTGFALVGGPA-RQDHPRAI 405 (1171)
Q Consensus 338 ~~daLI~~LE~~-G~~vipvf~~gl~~-~------~~v~---~~f~~~~~~~~~VDavIn~tgFsL~ggpa-~~~~~~~~ 405 (1171)
.+++++++++++ |..|+||-+.|+.. . .+++ +.+..+.. .....--||+.|+...-.+. ..|..+-.
T Consensus 107 Di~~v~~~~~~~~~~pvi~v~t~gf~g~~~~~G~~~a~~al~~~~~~~~~-~~~~~~~VNliG~~~~~~~~~~~d~~ei~ 185 (426)
T cd01972 107 DVESVVEELEDEIGIPVVALHCEGFKGKHWRSGFDAAFHGILRHLVPPQD-PTKQEDSVNIIGLWGGPERTEQEDVDEFK 185 (426)
T ss_pred CHHHHHHHHHHhhCCCEEEEeCCccCCccHhHHHHHHHHHHHHHhcCCCC-CCCCCCCEEEEccCCCccccccccHHHHH
Confidence 478899988754 88999998887754 1 1122 22322110 11122357877654321110 23455667
Q ss_pred HHhhhCCCcEEeEecCCCCCHHHHhcCC
Q 001056 406 EALRKLDVPYIVALPLVFQTTEEWLNST 433 (1171)
Q Consensus 406 ~~L~~LnVPvl~ai~l~~qt~eeW~~s~ 433 (1171)
.+|+++|+.|....+ ...+.++|++.+
T Consensus 186 ~lL~~~Gi~v~~~~~-~~~~~~ei~~~~ 212 (426)
T cd01972 186 RLLNELGLRVNAIIA-GGCSVEELERAS 212 (426)
T ss_pred HHHHHcCCeEEEEeC-CCCCHHHHHhcc
Confidence 899999999987665 458999999864
No 16
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=58.95 E-value=1e+02 Score=37.55 Aligned_cols=107 Identities=16% Similarity=0.139 Sum_probs=62.6
Q ss_pred eEEEEeeccccccCCChHHHHHHHHHHHCCCcEEEEEecCCCCc------hhhhHh---hccccCCCccceeeeecccc-
Q 001056 321 VIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFA------GPVERF---FVDPVMKKPMVNSAISLTGF- 390 (1171)
Q Consensus 321 ~Vgil~yrs~~~~g~~~~~daLI~~LE~~G~~vipvf~~gl~~~------~~v~~~---f~~~~~~~~~VDavIn~tgF- 390 (1171)
.|+|+.--..-+-|+ .++++++++++.|..++||-+.|+... .+++.. |.. .......--||+.|.
T Consensus 89 ~I~V~ttC~~~~IGd--Di~~v~~~~~~~~~~vi~v~t~gf~g~~~~G~~~a~~al~~~~~~--~~~~~~~~~VNiiG~~ 164 (427)
T cd01971 89 LFVVLTGCIAEIIGD--DVGAVVSEFQEGGAPIVYLETGGFKGNNYAGHEIVLKAIIDQYVG--QSEEKEPGLVNLWGPV 164 (427)
T ss_pred EEEEEcCCcHHHhhc--CHHHHHHHhhhcCCCEEEEECCCcCcccccHHHHHHHHHHHHhcc--CCCCCCCCeEEEEecc
Confidence 455554333323332 478899999888999999988876532 122222 222 110112334666553
Q ss_pred cccCCCCCCCchhHHHHhhhCCCcEEeEecCCCCCHHHHhcC
Q 001056 391 ALVGGPARQDHPRAIEALRKLDVPYIVALPLVFQTTEEWLNS 432 (1171)
Q Consensus 391 sL~ggpa~~~~~~~~~~L~~LnVPvl~ai~l~~qt~eeW~~s 432 (1171)
+....-...|..+-.++|+++++.+...++ ...+.+++++.
T Consensus 165 ~~~~~~~~~d~~elk~lL~~~Gl~v~~~~~-~~~~~~ei~~~ 205 (427)
T cd01971 165 PYQDPFWRGDLEEIKRVLEGIGLKVNILFG-PESNGEELRSI 205 (427)
T ss_pred CCccccccccHHHHHHHHHHCCCeEEEEEC-CCCCHHHHHhc
Confidence 211110123556777899999999987775 35788999975
No 17
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=56.67 E-value=28 Score=35.38 Aligned_cols=21 Identities=14% Similarity=0.123 Sum_probs=12.3
Q ss_pred EEEEEEEcccchhHHHHHHHH
Q 001056 77 VKIVYVVLEAQYQSALSAAVQ 97 (1171)
Q Consensus 77 ~~~v~v~~~~~~~~~~~~a~~ 97 (1171)
|||++|...+.-.+.-.+.++
T Consensus 1 Mkilii~gS~r~~~~t~~l~~ 21 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAE 21 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHH
T ss_pred CEEEEEECcCCCCCHHHHHHH
Confidence 799999988744343333333
No 18
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=56.63 E-value=96 Score=37.93 Aligned_cols=105 Identities=14% Similarity=0.083 Sum_probs=59.8
Q ss_pred eEEEEeeccccccCCChHHHHHHHHHHHC-CCcEEEEEecCCCC-c------hhhh---HhhccccCCCccceeeeeccc
Q 001056 321 VIGLILQRSHIVTGDDSHYVAVIMELEAR-GAKVIPIFAGGLDF-A------GPVE---RFFVDPVMKKPMVNSAISLTG 389 (1171)
Q Consensus 321 ~Vgil~yrs~~~~g~~~~~daLI~~LE~~-G~~vipvf~~gl~~-~------~~v~---~~f~~~~~~~~~VDavIn~tg 389 (1171)
.|+|+.-=..-+-| +.+++++++++++ |..|+||-+.|+.. . .+++ +.|...........--||+.|
T Consensus 121 ~I~V~~tC~~~liG--dDi~~v~~~~~~~~~~pvi~v~t~gf~g~~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig 198 (443)
T TIGR01862 121 AISVYATCPTGLIG--DDIEAVAKEVSKEIGKDVVAVNCPGFAGVSQSKGHHIANIAVINDKVGTREKEITTEYDVNIIG 198 (443)
T ss_pred eEEEECCChHHHhc--cCHHHHHHHHHHhcCCCEEEEecCCccCCccchHHHHHHHHHHHHHhCCCCcccCCCCeEEEEc
Confidence 34444433332333 3578899988754 78888887776643 1 1122 222211011111123466654
Q ss_pred -ccccCCCCCCCchhHHHHhhhCCCcEEeEecCCCCCHHHHhcCC
Q 001056 390 -FALVGGPARQDHPRAIEALRKLDVPYIVALPLVFQTTEEWLNST 433 (1171)
Q Consensus 390 -FsL~ggpa~~~~~~~~~~L~~LnVPvl~ai~l~~qt~eeW~~s~ 433 (1171)
|.+ ..|..+-.++|+++++.+...++ ...|.+++++.+
T Consensus 199 ~~~~-----~~d~~el~~lL~~~Gl~v~~~~~-~~~t~eei~~~~ 237 (443)
T TIGR01862 199 EYNI-----GGDAWVMRIYLEEMGIQVVATFT-GDGTYDEIRLMH 237 (443)
T ss_pred cCcC-----cccHHHHHHHHHHcCCeEEEEEC-CCCCHHHHHhcc
Confidence 322 13456677899999999987664 457899999764
No 19
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=56.32 E-value=62 Score=39.35 Aligned_cols=103 Identities=21% Similarity=0.221 Sum_probs=61.2
Q ss_pred eEEEEeeccccccCCChHHHHHHHHHHHC----CCcEEEEEecCCCCch------hhhHh---hccccCCCccceeeeec
Q 001056 321 VIGLILQRSHIVTGDDSHYVAVIMELEAR----GAKVIPIFAGGLDFAG------PVERF---FVDPVMKKPMVNSAISL 387 (1171)
Q Consensus 321 ~Vgil~yrs~~~~g~~~~~daLI~~LE~~----G~~vipvf~~gl~~~~------~v~~~---f~~~~~~~~~VDavIn~ 387 (1171)
.|+|+.--..-+-|| .+++++++++++ +..++||-+.|+.... +++.. |.. . ...+--||+
T Consensus 87 ~I~V~ttc~~~iiGd--Di~~v~~~~~~~~~~~~~~vi~v~t~gF~g~~~~G~~~a~~al~~~~~~--~--~~~~~~VNl 160 (429)
T cd03466 87 VIGIATTCLSETIGE--DVPRIIREFREEVDDSEPKIIPASTPGYGGTHVEGYDTAVRSIVKNIAV--D--PDKIEKINV 160 (429)
T ss_pred EEEEeCCchHHHhhc--CHHHHHHHHhhcccCCCCcEEEEECCCCcccHHHHHHHHHHHHHHHhcc--C--CCCCCcEEE
Confidence 456654433333333 488999999985 7889999888775321 22222 222 1 112344777
Q ss_pred ccccccCCCCCCCchhHHHHhhhCCCcEEe-----------------EecCCCCCHHHHhcCC
Q 001056 388 TGFALVGGPARQDHPRAIEALRKLDVPYIV-----------------ALPLVFQTTEEWLNST 433 (1171)
Q Consensus 388 tgFsL~ggpa~~~~~~~~~~L~~LnVPvl~-----------------ai~l~~qt~eeW~~s~ 433 (1171)
.|..+. ..|..+-.++|+++++.++. +++....+.++|++.+
T Consensus 161 ig~~~~----~~D~~ei~~lL~~~Gl~~~~~~d~s~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 219 (429)
T cd03466 161 IAGMMS----PADIREIKEILREFGIEYILLPDTSETLDGPFWGEYHRLPSGGTPISEIKGMG 219 (429)
T ss_pred ECCCCC----hhHHHHHHHHHHHcCCCeEEecCccccccCCCCCCcceeCCCCCCHHHHHhhc
Confidence 653322 23556677899999999842 2323456889999864
No 20
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=54.58 E-value=1.2e+02 Score=36.25 Aligned_cols=91 Identities=16% Similarity=0.063 Sum_probs=56.5
Q ss_pred HHHHHHHHHHH-CCCcEEEEEecCCCC-c------hh---hhHhhccccCCCccceeeeecccccccCCCCCCCchhHHH
Q 001056 338 HYVAVIMELEA-RGAKVIPIFAGGLDF-A------GP---VERFFVDPVMKKPMVNSAISLTGFALVGGPARQDHPRAIE 406 (1171)
Q Consensus 338 ~~daLI~~LE~-~G~~vipvf~~gl~~-~------~~---v~~~f~~~~~~~~~VDavIn~tgFsL~ggpa~~~~~~~~~ 406 (1171)
.++++++++++ .|+.++|+-+.|+.. . .+ +-+++...........--||+.|+.. .+ .|..+-.+
T Consensus 105 Di~~v~~~~~~~~~~~vi~v~t~gf~g~~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~--~~--~d~~el~~ 180 (406)
T cd01967 105 DIEAVAKEASKELGIPVIPVNCEGFRGVSQSLGHHIANDAILDHLVGTKEPEEKTPYDVNIIGEYN--IG--GDAWVIKP 180 (406)
T ss_pred CHHHHHHHHHHhhCCCEEEEeCCCeeCCcccHHHHHHHHHHHHHhcCCCCcCCCCCCeEEEEeccc--cc--hhHHHHHH
Confidence 47888888875 588899998887644 1 11 22233321100111234567665431 12 24566778
Q ss_pred HhhhCCCcEEeEecCCCCCHHHHhcCC
Q 001056 407 ALRKLDVPYIVALPLVFQTTEEWLNST 433 (1171)
Q Consensus 407 ~L~~LnVPvl~ai~l~~qt~eeW~~s~ 433 (1171)
+|+++++.+...++ ...+.++++..+
T Consensus 181 lL~~~Gi~~~~~~~-~~~~~~~i~~~~ 206 (406)
T cd01967 181 LLEELGIRVNATFT-GDGTVDELRRAH 206 (406)
T ss_pred HHHHcCCEEEEEeC-CCCCHHHHhhCc
Confidence 99999999997775 468999999764
No 21
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=53.17 E-value=42 Score=38.43 Aligned_cols=91 Identities=12% Similarity=0.082 Sum_probs=52.7
Q ss_pred eEEEEeeccccccC-CChHHHHHHHHHHHCCCcEEEEEecCCCCc---hhhhHhhccccCCCccceeeeecccccccCCC
Q 001056 321 VIGLILQRSHIVTG-DDSHYVAVIMELEARGAKVIPIFAGGLDFA---GPVERFFVDPVMKKPMVNSAISLTGFALVGGP 396 (1171)
Q Consensus 321 ~Vgil~yrs~~~~g-~~~~~daLI~~LE~~G~~vipvf~~gl~~~---~~v~~~f~~~~~~~~~VDavIn~tgFsL~ggp 396 (1171)
+|||+|-...---. .......++++|+++|..|+++........ +..+..... ......+|+|+++.. |.
T Consensus 1 ~~~~~~gg~s~e~~~s~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~v~~~~~-----g~ 74 (315)
T TIGR01205 1 RVAVLFGGKSAEHEISLVSAAAVLKALRDLGYDVYPVDIDKMGSWTYKDLPQLILEL-GALLEGIDVVFPVLH-----GR 74 (315)
T ss_pred CEEEEeCCCCCCeeeeHHHHHHHHHHHhhcCCEEEEEeecCCccccccchHHHHhhc-cccCCCCCEEEEecC-----CC
Confidence 37888865432221 234567799999999999999987542110 111111100 012245899999542 11
Q ss_pred CCCCchhHHHHhhhCCCcEEeE
Q 001056 397 ARQDHPRAIEALRKLDVPYIVA 418 (1171)
Q Consensus 397 a~~~~~~~~~~L~~LnVPvl~a 418 (1171)
.+.+ .....+|+.+|+||+..
T Consensus 75 ~~~~-~~~~~~le~~gip~~g~ 95 (315)
T TIGR01205 75 YGED-GTIQGLLELMGIPYTGS 95 (315)
T ss_pred CCCC-cHHHHHHHHcCCCccCC
Confidence 1112 23457899999999864
No 22
>cd03557 L-arabinose_isomerase L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=51.28 E-value=91 Score=38.72 Aligned_cols=181 Identities=15% Similarity=0.166 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHCCCcEEEEEecC-CCCchhhhHhhccccCCCccceeeeec-ccccccCCCCCCCchhHHHHhhhCCCc
Q 001056 337 SHYVAVIMELEARGAKVIPIFAGG-LDFAGPVERFFVDPVMKKPMVNSAISL-TGFALVGGPARQDHPRAIEALRKLDVP 414 (1171)
Q Consensus 337 ~~~daLI~~LE~~G~~vipvf~~g-l~~~~~v~~~f~~~~~~~~~VDavIn~-tgFsL~ggpa~~~~~~~~~~L~~LnVP 414 (1171)
++...+++.|.+.|-.++.|...+ ++....+.+.|.. .+....+|.||-. .-|+ +..-....++.+++|
T Consensus 23 ~~~~~i~~~l~~~~~~~~~v~~~~~v~~~~~i~~~~~~-~~~~~~~dgvi~~m~TFs--------~a~~~i~~~~~l~~P 93 (484)
T cd03557 23 AHSREIVDGLNASGKLPVKIVFKPVLTTPDEILAVCRE-ANADDNCAGVITWMHTFS--------PAKMWIAGLTALQKP 93 (484)
T ss_pred HHHHHHHHHhcccCCCCeEEEEccccCCHHHHHHHHHH-ccccCCccEEEEccCCCc--------hHHHHHHHHHHcCCC
Confidence 455678888888776555555444 3545566677754 2223568888874 3453 233456789999999
Q ss_pred EEeEecCCCCCHHHHhcCCCCCChhhhhhhe-eccccCcce------eeEEEEEecCCCCccccchHHHHHHHHHHHHHH
Q 001056 415 YIVALPLVFQTTEEWLNSTLGLHPIQVALQV-ALPELDGGL------EPIVFAGRDPRTGKAHALHKRVEQLCTRAIRWG 487 (1171)
Q Consensus 415 vl~ai~l~~qt~eeW~~s~~GL~p~~~~~~V-alPElDG~I------~piv~~g~~~~~~~~~pipeRi~~la~r~~~W~ 487 (1171)
|+...+- +...=.|..-+.+. +..-.+- ..||+-... -.++.|-.+ ..-..++|+..++-+.-|-
T Consensus 94 vL~~~~q-~~~~l~~~sidmd~--m~l~qaahG~~e~~~il~R~gi~~~~v~G~~~-----d~~~~~~i~~w~raa~v~~ 165 (484)
T cd03557 94 LLHLHTQ-FNREIPWDTIDMDF--MNLNQSAHGDREFGFIGSRMRIPRKVVVGHWQ-----DPEVHEKIGDWMRAAAGWA 165 (484)
T ss_pred EEEEccC-CCccCCCCCccchH--HhhhhhcCCcHHHHHHHHHcCCCeeEEEEeCC-----CHHHHHHHHHHHHHHHHHH
Confidence 9977642 21111233211111 1111111 334443322 233433211 1124578888999999999
Q ss_pred HcccCCCCCceEEEEeecCCCCCCCccccCCCChHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q 001056 488 ELKRKTKAEKKLAITVFSFPPDKGNIGTAAYLNVFSSIFSVLKDLQRDGYNVEGLPETSEALIEEI 553 (1171)
Q Consensus 488 ~LR~kpn~eKKVAIil~nyPp~~g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~vg~~P~~~~~L~~~i 553 (1171)
.||+ -|||.+=+| ..||--|=-..+..-+.-|+.|..++ ..+|.+.+
T Consensus 166 ~lr~-----~rI~~~G~~------------m~~v~vtEgd~~~~~~~fG~~V~~~~--l~el~~~~ 212 (484)
T cd03557 166 DSRH-----LKVARFGDN------------MRNVAVTEGDKVEAQIQFGWSVNGYG--VGDLVARV 212 (484)
T ss_pred Hhhc-----CeeEEEcCc------------cceeccCcchHHHHHHHhCeEEEEEc--HHHHHHHH
Confidence 9987 478876542 34443222255556677799986543 35555544
No 23
>PRK02929 L-arabinose isomerase; Provisional
Probab=51.02 E-value=1.1e+02 Score=38.34 Aligned_cols=177 Identities=15% Similarity=0.121 Sum_probs=100.4
Q ss_pred ChHHHHHHHHHHHCCCcEEEEEecCC-CCchhhhHhhccccCCCccceeeeec-ccccccCCCCCCCchhHHHHhhhCCC
Q 001056 336 DSHYVAVIMELEARGAKVIPIFAGGL-DFAGPVERFFVDPVMKKPMVNSAISL-TGFALVGGPARQDHPRAIEALRKLDV 413 (1171)
Q Consensus 336 ~~~~daLI~~LE~~G~~vipvf~~gl-~~~~~v~~~f~~~~~~~~~VDavIn~-tgFsL~ggpa~~~~~~~~~~L~~LnV 413 (1171)
.++...+++.|.+.|-.++.|...++ +....+++++.. .+....+|.||-. .-|+ ++.-....++.+++
T Consensus 28 ~~~~~~i~~~l~~~~~~~~~vv~~~~v~~~~~i~~~~~~-~~~~~~~dgvi~~m~TFs--------~a~~~i~~~~~l~~ 98 (499)
T PRK02929 28 AEHAEEIVDGLNASGKLPVKIVLKPVLTTPDEITAVCRE-ANYDDNCAGVITWMHTFS--------PAKMWIRGLSALQK 98 (499)
T ss_pred HHHHHHHHHHhcccCCCCeEEEEcCccCCHHHHHHHHHH-ccccCCCcEEEEccCCCc--------hHHHHHHHHHHcCC
Confidence 34556688888877766566654443 444556666654 2335568988874 3453 23345678999999
Q ss_pred cEEeEecCCCCCH--H----HHhcCCCCCChhhhhhheeccccCcce------eeEEEEEecCCCCccccchHHHHHHHH
Q 001056 414 PYIVALPLVFQTT--E----EWLNSTLGLHPIQVALQVALPELDGGL------EPIVFAGRDPRTGKAHALHKRVEQLCT 481 (1171)
Q Consensus 414 Pvl~ai~l~~qt~--e----eW~~s~~GL~p~~~~~~ValPElDG~I------~piv~~g~~~~~~~~~pipeRi~~la~ 481 (1171)
||+...+-....+ + +|.+.-+-. -..+|+-... -.++.|--+ -.-..++|...++
T Consensus 99 PvL~~~~Q~~~e~p~~~id~d~m~lnqs~--------~G~~e~~~il~R~gi~~~~v~G~~~-----d~~v~~~i~~w~r 165 (499)
T PRK02929 99 PLLHLHTQFNAEIPWDTIDMDFMNLNQSA--------HGDREFGFIGARLRKQRKVVVGHWQ-----DPEVQERIGAWMR 165 (499)
T ss_pred CEEEEecCCCccCCCCCCCcchhhhhhcc--------cChHHHHHHHHHcCCCeeEEEEeCC-----CHHHHHHHHHHHH
Confidence 9998764211110 1 342221111 1334443322 234443211 1125688899999
Q ss_pred HHHHHHHcccCCCCCceEEEEeecCCCCCCCccccCCCChHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q 001056 482 RAIRWGELKRKTKAEKKLAITVFSFPPDKGNIGTAAYLNVFSSIFSVLKDLQRDGYNVEGLPETSEALIEEI 553 (1171)
Q Consensus 482 r~~~W~~LR~kpn~eKKVAIil~nyPp~~g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~vg~~P~~~~~L~~~i 553 (1171)
-+..|-.||+ .||+.+=.|+ .||--+=-.++..-+.-|++|..++ ..+|++.+
T Consensus 166 aa~v~~~lr~-----~rig~~G~~m------------~~v~vtEgd~~~~~~~fG~~V~~~~--~~el~~~~ 218 (499)
T PRK02929 166 VAAAWQESRH-----LKVARFGDNM------------RNVAVTEGDKVEAQIKFGWSVNTWG--VGDLVEVV 218 (499)
T ss_pred HHHHHHHhcC-----CeEEEECCch------------hhcccCcchHHHHHHHhCcEEEEec--HHHHHHHH
Confidence 9999999986 5788876642 2322122255566678899996553 45566554
No 24
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=50.18 E-value=1.5e+02 Score=35.69 Aligned_cols=89 Identities=19% Similarity=0.225 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHC-CCcEEEEEecCCCCc------hhhh---HhhccccCCCccceeeeeccc-ccccCCCCCCCchhHHH
Q 001056 338 HYVAVIMELEAR-GAKVIPIFAGGLDFA------GPVE---RFFVDPVMKKPMVNSAISLTG-FALVGGPARQDHPRAIE 406 (1171)
Q Consensus 338 ~~daLI~~LE~~-G~~vipvf~~gl~~~------~~v~---~~f~~~~~~~~~VDavIn~tg-FsL~ggpa~~~~~~~~~ 406 (1171)
.+++++++++++ |..++++.+.|+..+ .+++ +.+...........--||+.| |.+ ..|..+-.+
T Consensus 104 Di~~v~~~~~~~~~~~vi~v~t~gf~g~~~~G~~~a~~~l~~~l~~~~~~~~~~~~~VNiig~~~~-----~~d~~el~~ 178 (410)
T cd01968 104 DIDAVCKTASEKFGIPVIPVHSPGFVGNKNLGNKLACEALLDHVIGTEEPEPLTPYDINLIGEFNV-----AGELWGVKP 178 (410)
T ss_pred CHHHHHHHHHHhhCCCEEEEECCCcccChhHHHHHHHHHHHHHhcCCCCcccCCCCcEEEECCCCC-----cccHHHHHH
Confidence 578889988754 888999988886432 1222 233321111111123466654 332 124456778
Q ss_pred HhhhCCCcEEeEecCCCCCHHHHhcC
Q 001056 407 ALRKLDVPYIVALPLVFQTTEEWLNS 432 (1171)
Q Consensus 407 ~L~~LnVPvl~ai~l~~qt~eeW~~s 432 (1171)
+|+++|+.|..-++ ...|.++++..
T Consensus 179 lL~~~Gl~v~~~~~-~~~s~eei~~~ 203 (410)
T cd01968 179 LLEKLGIRVLASIT-GDSRVDEIRRA 203 (410)
T ss_pred HHHHcCCeEEEEeC-CCCCHHHHHhh
Confidence 99999999887664 45799999875
No 25
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=49.62 E-value=1.3e+02 Score=36.69 Aligned_cols=90 Identities=16% Similarity=0.213 Sum_probs=49.5
Q ss_pred eEEEEeeccccccCCChHHHHHHHHHHHC-----CCcEEEEEecCCCCc------hh---hhHhhccccCCCccceeeee
Q 001056 321 VIGLILQRSHIVTGDDSHYVAVIMELEAR-----GAKVIPIFAGGLDFA------GP---VERFFVDPVMKKPMVNSAIS 386 (1171)
Q Consensus 321 ~Vgil~yrs~~~~g~~~~~daLI~~LE~~-----G~~vipvf~~gl~~~------~~---v~~~f~~~~~~~~~VDavIn 386 (1171)
.|+|+.--..-+-| +.+++++++++++ |..++||-+.|+... .+ +-+.|..+........--||
T Consensus 94 ~I~V~ttC~~eiIG--DDi~~v~~~~~~e~p~~~~~pvi~v~tpgf~g~~~~G~~~a~~al~~~~~~~~~~~~~~~~~VN 171 (432)
T TIGR01285 94 AIGLLSTGLTETRG--EDIARVVRQFREKHPQHKGTAVVTVNTPDFKGSLEDGYAAAVESIIEAWVPPAPARAQRNRRVN 171 (432)
T ss_pred EEEEeCCCcccccc--cCHHHHHHHHHhhcccccCCeEEEecCCCcCCchHHHHHHHHHHHHHHHcccccccCCCCCeEE
Confidence 45555433222223 3578899998874 889999888776532 12 22333321111111123567
Q ss_pred ccc-ccccCCCCCCCchhHHHHhhhCCCcEE
Q 001056 387 LTG-FALVGGPARQDHPRAIEALRKLDVPYI 416 (1171)
Q Consensus 387 ~tg-FsL~ggpa~~~~~~~~~~L~~LnVPvl 416 (1171)
+.+ +.+. .+|..+-.++|+++++.++
T Consensus 172 iig~~~~~----~~d~~elk~lL~~~Gl~~~ 198 (432)
T TIGR01285 172 LLVGSLLT----PGDIEELRRMVEAFGLKPI 198 (432)
T ss_pred EEcCCCCC----ccCHHHHHHHHHHcCCceE
Confidence 643 3232 1355666789999999985
No 26
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=48.86 E-value=5.5 Score=35.79 Aligned_cols=35 Identities=34% Similarity=0.481 Sum_probs=29.6
Q ss_pred ecCCCCCCCccccCCCChHHHHHHHHHHHHHCCCC
Q 001056 504 FSFPPDKGNIGTAAYLNVFSSIFSVLKDLQRDGYN 538 (1171)
Q Consensus 504 ~nyPp~~g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~ 538 (1171)
+.|||--..|+.+.++.++.|+...|++|.+.||=
T Consensus 22 ~G~~Pt~rEIa~~~g~~S~~tv~~~L~~Le~kG~I 56 (65)
T PF01726_consen 22 NGYPPTVREIAEALGLKSTSTVQRHLKALERKGYI 56 (65)
T ss_dssp HSS---HHHHHHHHTSSSHHHHHHHHHHHHHTTSE
T ss_pred cCCCCCHHHHHHHhCCCChHHHHHHHHHHHHCcCc
Confidence 47999989999999999999999999999999994
No 27
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=47.98 E-value=1.9e+02 Score=35.15 Aligned_cols=105 Identities=22% Similarity=0.218 Sum_probs=61.3
Q ss_pred eEEEEeeccccccCCChHHHHHHHHHHH-----CCCcEEEEEecCCCCc------hhhh---HhhccccCCCccceeeee
Q 001056 321 VIGLILQRSHIVTGDDSHYVAVIMELEA-----RGAKVIPIFAGGLDFA------GPVE---RFFVDPVMKKPMVNSAIS 386 (1171)
Q Consensus 321 ~Vgil~yrs~~~~g~~~~~daLI~~LE~-----~G~~vipvf~~gl~~~------~~v~---~~f~~~~~~~~~VDavIn 386 (1171)
.|+|+.-=..-+-|+ .++++++++++ .|..++++-+.|+..+ .+++ +.|... .. ....--||
T Consensus 84 ~I~v~~tC~~~liGd--Di~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~~~~G~~~a~~al~~~~~~~-~~-~~~~~~VN 159 (428)
T cd01965 84 VIGVLTTCLTETIGD--DVAGFIKEFRAEGPEPADFPVVYASTPSFKGSHETGYDNAVKAIIEQLAKP-SE-VKKNGKVN 159 (428)
T ss_pred EEEEECCcchhhcCC--CHHHHHHHHHhhccCCCCCeEEEeeCCCCCCcHHHHHHHHHHHHHHHHhcc-cC-CCCCCeEE
Confidence 466654433333333 48889999987 5899999877776521 1222 223221 10 01223355
Q ss_pred cc-cccccCCCCCCCchhHHHHhhhCCCcEEeEecC-----------------CCCCHHHHhcCC
Q 001056 387 LT-GFALVGGPARQDHPRAIEALRKLDVPYIVALPL-----------------VFQTTEEWLNST 433 (1171)
Q Consensus 387 ~t-gFsL~ggpa~~~~~~~~~~L~~LnVPvl~ai~l-----------------~~qt~eeW~~s~ 433 (1171)
+. +|.+.. .|..+-.++|+++|+.+....+. ...+.+++++.+
T Consensus 160 lig~~~~~~----~d~~el~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~gg~~~e~i~~~~ 220 (428)
T cd01965 160 LLPGFPLTP----GDVREIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTKGGTTLEEIRDAG 220 (428)
T ss_pred EECCCCCCc----cCHHHHHHHHHHcCCCEEEecCcccccCCCCCCCccccCCCCCcHHHHHHhc
Confidence 43 444322 14566778999999999876653 246788888753
No 28
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=47.95 E-value=1.5e+02 Score=36.57 Aligned_cols=91 Identities=16% Similarity=0.207 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHC-CCcEEEEEecCCCC-c---------hhhhHhhccccCCC--ccceeeeeccc-ccccCCCCCCCch
Q 001056 337 SHYVAVIMELEAR-GAKVIPIFAGGLDF-A---------GPVERFFVDPVMKK--PMVNSAISLTG-FALVGGPARQDHP 402 (1171)
Q Consensus 337 ~~~daLI~~LE~~-G~~vipvf~~gl~~-~---------~~v~~~f~~~~~~~--~~VDavIn~tg-FsL~ggpa~~~~~ 402 (1171)
+.+++++++++++ |..|+||-+.|+.. + .++-+++......+ ....--||+.| |.+ . +|..
T Consensus 149 DDi~av~~~~~~~~~~pVi~v~t~gf~G~s~~~G~~~a~~ai~~~l~~~~~~~~~~~~~~~VNiiG~~~~-~----gd~~ 223 (466)
T TIGR01282 149 DDIEAVAKKASKELGKPVVPVRCEGFRGVSQSLGHHIANDAVRDWVLGKGDKEKFEPTPYDVAIIGDYNI-G----GDAW 223 (466)
T ss_pred cCHHHHHHHHhhhcCCcEEEEeCCCcCCchhhHHHHHHHHHHHHHhhccccccccCCCCCeEEEEecCCC-c----ccHH
Confidence 3578889988754 89999998888753 1 12334444311100 11123466654 322 1 2445
Q ss_pred hHHHHhhhCCCcEEeEecCCCCCHHHHhcCC
Q 001056 403 RAIEALRKLDVPYIVALPLVFQTTEEWLNST 433 (1171)
Q Consensus 403 ~~~~~L~~LnVPvl~ai~l~~qt~eeW~~s~ 433 (1171)
+-..+|+++++.|..-++ ...+.++++..+
T Consensus 224 eik~lL~~~Gi~v~~~~s-g~~t~~~i~~~~ 253 (466)
T TIGR01282 224 ESRILLEEIGLRVVAQWS-GDGTLNEMENAP 253 (466)
T ss_pred HHHHHHHHcCCeEEEEEC-CCCCHHHHHhcc
Confidence 566899999999985554 456899999864
No 29
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=44.34 E-value=1.8e+02 Score=35.39 Aligned_cols=76 Identities=14% Similarity=0.224 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHC-----CCcEEEEEecCCCCc------hhh---hHhhccccCCCccceeeeecc-cccccCCCCCCCch
Q 001056 338 HYVAVIMELEAR-----GAKVIPIFAGGLDFA------GPV---ERFFVDPVMKKPMVNSAISLT-GFALVGGPARQDHP 402 (1171)
Q Consensus 338 ~~daLI~~LE~~-----G~~vipvf~~gl~~~------~~v---~~~f~~~~~~~~~VDavIn~t-gFsL~ggpa~~~~~ 402 (1171)
.+++++++++++ |..+++|-+.|+... .++ -+.|..+...+....--||+. ++.+. | .|-.
T Consensus 99 Di~~v~~~~~~~~p~~~~~~vi~v~t~gf~g~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~--~--~D~~ 174 (417)
T cd01966 99 DIAGALKQFRAEHPELADVPVVYVSTPDFEGSLEDGWAAAVEAIIEALVEPGSRTVTDPRQVNLLPGAHLT--P--GDVE 174 (417)
T ss_pred CHHHHHHHHHhhccccCCCeEEEecCCCCCCcHHHHHHHHHHHHHHHhcccccccCCCCCcEEEECCCCCC--H--HHHH
Confidence 388899999888 888888877776421 122 233332111001123346765 33221 1 2455
Q ss_pred hHHHHhhhCCCcEEe
Q 001056 403 RAIEALRKLDVPYIV 417 (1171)
Q Consensus 403 ~~~~~L~~LnVPvl~ 417 (1171)
+-.++|+++++-++.
T Consensus 175 eik~lL~~~Gl~v~~ 189 (417)
T cd01966 175 ELKDIIEAFGLEPII 189 (417)
T ss_pred HHHHHHHHcCCceEE
Confidence 667899999999853
No 30
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=43.03 E-value=2.5e+02 Score=34.69 Aligned_cols=91 Identities=11% Similarity=0.069 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHC--CCcEEEEEecCCCC-ch------hhhHhh---ccccCCCccceeeeecccccccCCCCCCCchhH
Q 001056 337 SHYVAVIMELEAR--GAKVIPIFAGGLDF-AG------PVERFF---VDPVMKKPMVNSAISLTGFALVGGPARQDHPRA 404 (1171)
Q Consensus 337 ~~~daLI~~LE~~--G~~vipvf~~gl~~-~~------~v~~~f---~~~~~~~~~VDavIn~tgFsL~ggpa~~~~~~~ 404 (1171)
+.+++++++++++ |..|+||-+.|+.. .. .++.++ ...........--||+.|-... ..|..+-
T Consensus 144 DDi~~v~~~~~~~~~~~~vi~v~tpgf~g~s~~~G~~~a~~~~~~~~v~~~~~~~~~~~~VNiiG~~~~----~gd~~el 219 (461)
T TIGR01860 144 DDIKAVAKKVQKELPDVDIFTVECPGFAGVSQSKGHHVLNIGWINEKVGTLEPEITSEYTINVIGDYNI----QGDTQVL 219 (461)
T ss_pred CCHHHHHHHHHHhcCCCcEEEEeCCCcCCcccchHHHHHHHHHHHHHhcccCCCCCCCCcEEEECCCCC----cccHHHH
Confidence 3578899998876 67899888877653 11 222222 1111111112334676542111 1244566
Q ss_pred HHHhhhCCCcEEeEecCCCCCHHHHhcC
Q 001056 405 IEALRKLDVPYIVALPLVFQTTEEWLNS 432 (1171)
Q Consensus 405 ~~~L~~LnVPvl~ai~l~~qt~eeW~~s 432 (1171)
.++|+++|+.++..++ ...|.++++..
T Consensus 220 ~~lL~~~Gi~v~~~~~-g~~t~~ei~~~ 246 (461)
T TIGR01860 220 QKYWDKMGIQVIAHFT-GNGTYDDLRCM 246 (461)
T ss_pred HHHHHHcCCcEEEEeC-CCCCHHHHHhc
Confidence 7899999999987664 46788999875
No 31
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=42.85 E-value=53 Score=39.67 Aligned_cols=152 Identities=20% Similarity=0.296 Sum_probs=86.4
Q ss_pred CCCCeEEEEeeccccccCCChHHHHHHHHHHHCCCcEEEEEecCCCCchhhhHhhccccCCCccceeeeecccc----cc
Q 001056 317 PDAPVIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISLTGF----AL 392 (1171)
Q Consensus 317 ~~~p~Vgil~yrs~~~~g~~~~~daLI~~LE~~G~~vipvf~~gl~~~~~v~~~f~~~~~~~~~VDavIn~tgF----sL 392 (1171)
.++|.|||-.+.. -+..++++.+.||++|+.|+..-+.|.. -.++|++-.+ | .+|+|+.+|-= -|
T Consensus 183 ~~kp~I~iTmfGv-----TTp~V~~~~~~Le~~G~Ev~VFHAtG~G-G~aME~Li~~---G--~~~~VlDlTttEl~d~l 251 (403)
T PF06792_consen 183 EDKPLIGITMFGV-----TTPCVDAIRERLEEEGYEVLVFHATGTG-GRAMERLIRE---G--QFDGVLDLTTTELADEL 251 (403)
T ss_pred CCCcEEEEECCCC-----cHHHHHHHHHHHHhcCCeEEEEcCCCCc-hHHHHHHHHc---C--CcEEEEECcHHHHHHHH
Confidence 6789999998742 2577899999999999999954445543 2567776643 2 48999987532 13
Q ss_pred cCCCCCCCchhHHHHhhhCCCcEEeEecCCCCCHHHHhcCCCCCChhhhhhheeccc-cCcceeeEEEEEecCCCCcccc
Q 001056 393 VGGPARQDHPRAIEALRKLDVPYIVALPLVFQTTEEWLNSTLGLHPIQVALQVALPE-LDGGLEPIVFAGRDPRTGKAHA 471 (1171)
Q Consensus 393 ~ggpa~~~~~~~~~~L~~LnVPvl~ai~l~~qt~eeW~~s~~GL~p~~~~~~ValPE-lDG~I~piv~~g~~~~~~~~~p 471 (1171)
.||-... .+.--+.--+.+||++...--. +. -...|.+ .+|| +.|+-- ---++..-.++.
T Consensus 252 ~GGv~sa-gp~Rl~AA~~~GIP~Vvs~Gal--Dm-------VnFg~~~-----tvPe~~~~R~~----~~HNp~vTlmRt 312 (403)
T PF06792_consen 252 FGGVLSA-GPDRLEAAARAGIPQVVSPGAL--DM-------VNFGPPD-----TVPEKFKGRKL----YEHNPQVTLMRT 312 (403)
T ss_pred hCCCCCC-CchHHHHHHHcCCCEEEecCcc--ce-------eccCCcc-----cCCHhhcCCcc----eecCCceeEeeC
Confidence 4442211 1112234457899988653210 11 1112211 1343 444320 000011113456
Q ss_pred chHHHHHHHHHHHHHHHcccCCCCCceEEEEe
Q 001056 472 LHKRVEQLCTRAIRWGELKRKTKAEKKLAITV 503 (1171)
Q Consensus 472 ipeRi~~la~r~~~W~~LR~kpn~eKKVAIil 503 (1171)
-+|....+++.+..-++- +.-.|++++
T Consensus 313 t~eE~~~~g~~ia~kLn~-----~~gpv~v~l 339 (403)
T PF06792_consen 313 TPEENRQLGEFIAEKLNR-----AKGPVRVLL 339 (403)
T ss_pred CHHHHHHHHHHHHHHHhc-----CCCCEEEEE
Confidence 778888887777764444 566688888
No 32
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=42.80 E-value=1.8e+02 Score=35.78 Aligned_cols=91 Identities=19% Similarity=0.227 Sum_probs=49.8
Q ss_pred eEEEEeeccccccCCChHHHHHHHHHHHC-----CCcEEEEEecCCCCc------hhhh---HhhccccCCCccceeeee
Q 001056 321 VIGLILQRSHIVTGDDSHYVAVIMELEAR-----GAKVIPIFAGGLDFA------GPVE---RFFVDPVMKKPMVNSAIS 386 (1171)
Q Consensus 321 ~Vgil~yrs~~~~g~~~~~daLI~~LE~~-----G~~vipvf~~gl~~~------~~v~---~~f~~~~~~~~~VDavIn 386 (1171)
.|+|+.--..-+-|| .+++++++++++ |..|++|-+.|+... .+++ +.|...........--||
T Consensus 95 ~I~V~ttC~~eiIGD--Di~~v~~~~~~~~p~~~~~pvi~v~tpgF~g~~~~G~~~a~~al~~~~~~~~~~~~~~~~~VN 172 (455)
T PRK14476 95 IIGLCTTGLTETRGD--DVAGALKEIRARHPELADTPIVYVSTPDFKGALEDGWAAAVEAIVEALVPPASSTGRRPRQVN 172 (455)
T ss_pred EEEEeCcchHhhhhc--cHHHHHHHHHhhccccCCCeEEEecCCCCCCcHHHHHHHHHHHHHHHhcccccCCCCCCCcEE
Confidence 566664332222232 478899999887 788888877776421 1222 223321000111233466
Q ss_pred ccc-ccccCCCCCCCchhHHHHhhhCCCcEEe
Q 001056 387 LTG-FALVGGPARQDHPRAIEALRKLDVPYIV 417 (1171)
Q Consensus 387 ~tg-FsL~ggpa~~~~~~~~~~L~~LnVPvl~ 417 (1171)
+.+ +.+. ..|..+-.++|+.+|+-++.
T Consensus 173 iIgg~~~~----~~D~~elk~lL~~~Gl~v~~ 200 (455)
T PRK14476 173 VLPGSHLT----PGDIEELREIIEAFGLEPII 200 (455)
T ss_pred EECCCCCC----cccHHHHHHHHHHcCCceEE
Confidence 653 3222 13556677899999999853
No 33
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=41.29 E-value=2.9e+02 Score=33.49 Aligned_cols=91 Identities=12% Similarity=0.011 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHC-C-CcEEEEEecCCCCc-------h---hhhHhhccccCCCccceeeeecccccccCCCCCCCchhHH
Q 001056 338 HYVAVIMELEAR-G-AKVIPIFAGGLDFA-------G---PVERFFVDPVMKKPMVNSAISLTGFALVGGPARQDHPRAI 405 (1171)
Q Consensus 338 ~~daLI~~LE~~-G-~~vipvf~~gl~~~-------~---~v~~~f~~~~~~~~~VDavIn~tgFsL~ggpa~~~~~~~~ 405 (1171)
.+++++++++++ + ..|+|+-+.|+... . .+-+.+...........--||+.|.... ..|..+-.
T Consensus 106 Di~~v~~~~~~~~~~~~vi~v~tpgf~g~~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNliG~~~~----~~d~~ei~ 181 (415)
T cd01977 106 DIKAVAKEVMEELPDVDIFVCNAPGFAGPSQSKGHHVLNIAWINQKVGTVEPEITSDYTINYIGDYNI----QGDTEVLQ 181 (415)
T ss_pred CHHHHHHHHHHhcCCCeEEEEeCCCcCCcchhHHHHHHHHHHHHHhhCcCCcCcCCCCcEEEEccCCC----cccHHHHH
Confidence 578899988865 3 67888866555321 1 1122232211111112345676653221 12445667
Q ss_pred HHhhhCCCcEEeEecCCCCCHHHHhcCC
Q 001056 406 EALRKLDVPYIVALPLVFQTTEEWLNST 433 (1171)
Q Consensus 406 ~~L~~LnVPvl~ai~l~~qt~eeW~~s~ 433 (1171)
++|+++|+.++..++ ...+.++++..+
T Consensus 182 ~lL~~~Gl~v~~~~~-~~~t~~ei~~~~ 208 (415)
T cd01977 182 KYFERMGIQVLSTFT-GNGTYDDLRWMH 208 (415)
T ss_pred HHHHHcCCeEEEEEC-CCCCHHHHHhcc
Confidence 899999999987775 468899999754
No 34
>PRK02399 hypothetical protein; Provisional
Probab=38.60 E-value=72 Score=38.58 Aligned_cols=91 Identities=29% Similarity=0.416 Sum_probs=56.6
Q ss_pred CCCCCeEEEEeeccccccCCChHHHHHHHHHHHCCCcEEEEEecCCCCchhhhHhhccccCCCccceeeeecccc----c
Q 001056 316 GPDAPVIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISLTGF----A 391 (1171)
Q Consensus 316 ~~~~p~Vgil~yrs~~~~g~~~~~daLI~~LE~~G~~vipvf~~gl~~~~~v~~~f~~~~~~~~~VDavIn~tgF----s 391 (1171)
..++|.||+-.+... +..++++.+.||++|+.|+..-+.|... .++|++-.. -.+|+|+.+|-= -
T Consensus 183 ~~~kp~Ig~TmfGvT-----tp~v~~~~~~Le~~GyEvlVFHATG~GG-raME~Li~~-----G~~~gVlDlTttEv~d~ 251 (406)
T PRK02399 183 SDDKPLIGLTMFGVT-----TPCVQAAREELEARGYEVLVFHATGTGG-RAMEKLIDS-----GLIAGVLDLTTTEVCDE 251 (406)
T ss_pred CCCCceEEEecCCCc-----HHHHHHHHHHHHhCCCeEEEEcCCCCch-HHHHHHHHc-----CCceEEEEcchHHHHHH
Confidence 356899999987432 4778999999999999999443445432 467776543 247888876531 1
Q ss_pred ccCCCCCCCchhHHHHhhhCCCcEEeE
Q 001056 392 LVGGPARQDHPRAIEALRKLDVPYIVA 418 (1171)
Q Consensus 392 L~ggpa~~~~~~~~~~L~~LnVPvl~a 418 (1171)
|.||-..- .+.--+.-.+.+||.+..
T Consensus 252 l~GGv~sa-gp~Rl~Aa~~~gIP~Vvs 277 (406)
T PRK02399 252 LFGGVLAA-GPDRLEAAARTGIPQVVS 277 (406)
T ss_pred HhCcCccC-CccHHHHHHHcCCCEEec
Confidence 34442111 111123445788898743
No 35
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=36.55 E-value=3.3e+02 Score=28.83 Aligned_cols=73 Identities=15% Similarity=0.130 Sum_probs=45.7
Q ss_pred EEEEEEEcccchhHHHHHHHHHHHhhcCCceEEEEEeehhhccChhhHHHHHHHh--hcCCEEEEeccccHHHHHHHHHH
Q 001056 77 VKIVYVVLEAQYQSALSAAVQALNQQVNYASYEVVGYLVEELRDVDTYKTFCKDL--ENANIFIGSLIFVEELALKIKAA 154 (1171)
Q Consensus 77 ~~~v~v~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~ad~~~~sllf~~~~~~~~~~~ 154 (1171)
.+|.++ ..-...+.++.+.|++.+|++.+ .++...-. +++..+++.++| +++||+|..|=.. .|-.|+...
T Consensus 49 ~~ifll---G~~~~~~~~~~~~l~~~yP~l~i--vg~~~g~f-~~~~~~~i~~~I~~~~pdiv~vglG~P-kQE~~~~~~ 121 (172)
T PF03808_consen 49 KRIFLL---GGSEEVLEKAAANLRRRYPGLRI--VGYHHGYF-DEEEEEAIINRINASGPDIVFVGLGAP-KQERWIARH 121 (172)
T ss_pred CeEEEE---eCCHHHHHHHHHHHHHHCCCeEE--EEecCCCC-ChhhHHHHHHHHHHcCCCEEEEECCCC-HHHHHHHHH
Confidence 356666 44467778899999999998655 43322222 455566666666 4789999997663 333444443
Q ss_pred HH
Q 001056 155 VE 156 (1171)
Q Consensus 155 ~~ 156 (1171)
-+
T Consensus 122 ~~ 123 (172)
T PF03808_consen 122 RQ 123 (172)
T ss_pred HH
Confidence 33
No 36
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=35.37 E-value=2.4e+02 Score=37.98 Aligned_cols=91 Identities=16% Similarity=0.144 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHH-CCCcEEEEEecCCCCc------hhhh---HhhccccCCCccceeeeeccc-ccccCCCCCCCchhHH
Q 001056 337 SHYVAVIMELEA-RGAKVIPIFAGGLDFA------GPVE---RFFVDPVMKKPMVNSAISLTG-FALVGGPARQDHPRAI 405 (1171)
Q Consensus 337 ~~~daLI~~LE~-~G~~vipvf~~gl~~~------~~v~---~~f~~~~~~~~~VDavIn~tg-FsL~ggpa~~~~~~~~ 405 (1171)
+.++++|+++++ .|+.|+||-+.|+..+ .+++ +.|..........+--||+.| |.+ .+|..+-.
T Consensus 129 DDi~~v~~~~~~~~~~pvi~v~tpGF~gs~~~G~~~a~~al~~~l~~~~~p~~~~~~~VNliG~~~~-----~gd~~elk 203 (917)
T PRK14477 129 DDVEAVCKAAAEKVGIPVIPVNTPGFIGDKNIGNRLAGEALLKHVIGTAEPEVTTPYDINLIGEYNI-----AGDLWGML 203 (917)
T ss_pred cCHHHHHHHHHHhhCCcEEEEECCCccCchhhHHHHHHHHHHHHHHhhcCCCCCCCCcEEEECCCCC-----cchHHHHH
Confidence 357889998875 4899999988876431 1222 223210010111123466654 332 12344566
Q ss_pred HHhhhCCCcEEeEecCCCCCHHHHhcCC
Q 001056 406 EALRKLDVPYIVALPLVFQTTEEWLNST 433 (1171)
Q Consensus 406 ~~L~~LnVPvl~ai~l~~qt~eeW~~s~ 433 (1171)
.+|+++++.|+.-++ ...+.++++...
T Consensus 204 ~lL~~~Gi~v~~~~~-g~~t~eei~~~~ 230 (917)
T PRK14477 204 PLFDRLGIRVLSCIS-GDAKFEELRYAH 230 (917)
T ss_pred HHHHHcCCeEEEEcC-CCCCHHHHHhcc
Confidence 799999999876664 456899999864
No 37
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=35.18 E-value=3.4e+02 Score=33.32 Aligned_cols=89 Identities=17% Similarity=0.168 Sum_probs=54.4
Q ss_pred HHHHHHHHHHH-CCCcEEEEEecCCCCc------hhhh---HhhccccCCC----ccceeeeeccc-ccccCCCCCCCch
Q 001056 338 HYVAVIMELEA-RGAKVIPIFAGGLDFA------GPVE---RFFVDPVMKK----PMVNSAISLTG-FALVGGPARQDHP 402 (1171)
Q Consensus 338 ~~daLI~~LE~-~G~~vipvf~~gl~~~------~~v~---~~f~~~~~~~----~~VDavIn~tg-FsL~ggpa~~~~~ 402 (1171)
.++++++++++ .|+.|+||-+.|+... .+.+ +++....... ..-.--||+.| |.. ..|..
T Consensus 139 Di~~v~~e~~~~~~~~vi~v~t~gf~g~~~~G~~~a~~al~~~~~~~~~~~~~~~~~~~~~VNiiG~~~~-----~~d~~ 213 (456)
T TIGR01283 139 DLEAVCKAAAEKTGIPVIPVDSEGFYGSKNLGNKLACDALLKHVIGTREPEPIPVGTTVHDINLIGEFNV-----AGEFW 213 (456)
T ss_pred CHHHHHHHHHHHhCCCEEEEECCCCccchhHHHHHHHHHHHHHHhccCCcccccccCCCCcEEEEcCCCC-----cccHH
Confidence 57889998875 5999999988876432 1222 2232210000 01133567655 322 12344
Q ss_pred hHHHHhhhCCCcEEeEecCCCCCHHHHhcC
Q 001056 403 RAIEALRKLDVPYIVALPLVFQTTEEWLNS 432 (1171)
Q Consensus 403 ~~~~~L~~LnVPvl~ai~l~~qt~eeW~~s 432 (1171)
+-.++|+++|+.|...++ ...+.++++..
T Consensus 214 el~~lL~~~Gl~v~~~~~-~~~s~eei~~~ 242 (456)
T TIGR01283 214 HVKPLLEKLGIRVLATIT-GDSRYAEVQTA 242 (456)
T ss_pred HHHHHHHHcCCeEEEEeC-CCCcHHHHHhc
Confidence 567899999999998775 35689999865
No 38
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=34.86 E-value=1e+02 Score=31.55 Aligned_cols=75 Identities=17% Similarity=0.161 Sum_probs=46.5
Q ss_pred CcCCHHHHHHHhccCCCcccccCCCCCCeEEEEeeccccccCCChHHHHHHHHHHHCCCcEEEEEecCCCCchhhhHhhc
Q 001056 293 MYDDVKEYLNWYGTRKDTNEKLKGPDAPVIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFV 372 (1171)
Q Consensus 293 ~f~~~~~Y~~Wy~~~~~~~~~~~~~~~p~Vgil~yrs~~~~g~~~~~daLI~~LE~~G~~vipvf~~gl~~~~~v~~~f~ 372 (1171)
.|.+.+++.+...+ .+...|+|-. +.+.-.....+++++|+++|...++|+++|.......++|..
T Consensus 38 ~~~s~e~~v~aa~e----------~~adii~iSs----l~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~ 103 (132)
T TIGR00640 38 LFQTPEEIARQAVE----------ADVHVVGVSS----LAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKE 103 (132)
T ss_pred CCCCHHHHHHHHHH----------cCCCEEEEcC----chhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHH
Confidence 35566777765432 2334666633 233344567889999999999888899998654333444332
Q ss_pred cccCCCccceeeeec
Q 001056 373 DPVMKKPMVNSAISL 387 (1171)
Q Consensus 373 ~~~~~~~~VDavIn~ 387 (1171)
..||.++..
T Consensus 104 ------~Gvd~~~~~ 112 (132)
T TIGR00640 104 ------MGVAEIFGP 112 (132)
T ss_pred ------CCCCEEECC
Confidence 246776653
No 39
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=34.48 E-value=2.7e+02 Score=33.49 Aligned_cols=85 Identities=18% Similarity=0.197 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHC-CCcEEEEEecCCCCc------hhhh---HhhccccCCCccceeeeecccccccCCCCCCCchhHHHH
Q 001056 338 HYVAVIMELEAR-GAKVIPIFAGGLDFA------GPVE---RFFVDPVMKKPMVNSAISLTGFALVGGPARQDHPRAIEA 407 (1171)
Q Consensus 338 ~~daLI~~LE~~-G~~vipvf~~gl~~~------~~v~---~~f~~~~~~~~~VDavIn~tgFsL~ggpa~~~~~~~~~~ 407 (1171)
.+++++++++++ |..||||-+.|+... ..++ +++.. ..+ ..--||+.|+ +. + .+..+-..+
T Consensus 105 Di~~v~~~~~~~~~~pvi~v~t~gf~g~~~~G~~~~~~alv~~~~~--~~~--~~~~VnliG~-~~--~--~d~~el~~l 175 (396)
T cd01979 105 DLEGAAPRLSAEIGVPILVASASGLDYTFTQGEDTVLAALVPRCPE--KPS--PERSLVLVGS-LP--D--IVEDQLRRE 175 (396)
T ss_pred CHHHHHHHHhhcCCCcEEEeeCCCccccHHHHHHHHHHHHhhhccc--ccC--CCCceEEEEe-CC--c--chHHHHHHH
Confidence 577888888754 888999888777541 1122 12211 111 1123366665 21 2 234456689
Q ss_pred hhhCCCcEEeEecCCCCCHHHHhcCC
Q 001056 408 LRKLDVPYIVALPLVFQTTEEWLNST 433 (1171)
Q Consensus 408 L~~LnVPvl~ai~l~~qt~eeW~~s~ 433 (1171)
|+++|+.+..-+| ..+.+++..-.
T Consensus 176 L~~~Gi~v~~~~~--d~~~~~~~~~~ 199 (396)
T cd01979 176 LEQLGIPVVGFLP--PRRYTDLPVIG 199 (396)
T ss_pred HHHcCCeEEEEeC--CCChHHhhccC
Confidence 9999999976665 35778887543
No 40
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=33.76 E-value=1.1e+02 Score=37.32 Aligned_cols=56 Identities=13% Similarity=0.145 Sum_probs=37.3
Q ss_pred cEEEEEEEcc-cchhHHHHHHHHHHHhhcCCceEEEEEeehhhccChhhHHHHHHHhhcCCEEEEeccc
Q 001056 76 TVKIVYVVLE-AQYQSALSAAVQALNQQVNYASYEVVGYLVEELRDVDTYKTFCKDLENANIFIGSLIF 143 (1171)
Q Consensus 76 ~~~~v~v~~~-~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ad~~~~sllf 143 (1171)
.-.|+++-.| +.-...+..-++++.+... .++++.+. ...++|+..||+||.++--
T Consensus 29 ~~ei~L~Did~~~rl~~v~~~~~~~~~~~~-~~~~v~~t-----------~d~~~al~gadfVi~~~~v 85 (419)
T cd05296 29 VTELVLVDIDEEEKLEIVGALAKRMVKKAG-LPIKVHLT-----------TDRREALEGADFVFTQIRV 85 (419)
T ss_pred CCEEEEecCChHHHHHHHHHHHHHHHHhhC-CCeEEEEe-----------CCHHHHhCCCCEEEEEEee
Confidence 3468999888 5555556666666666544 34555541 1356899999999998764
No 41
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=33.51 E-value=1.4e+02 Score=32.86 Aligned_cols=84 Identities=18% Similarity=0.185 Sum_probs=47.1
Q ss_pred eEEEEee--ccccccCCChHHHHHHHHHHHCCCcEEEEEecCCCCc---hhhhHhhccccCCCccceeeeecccccccCC
Q 001056 321 VIGLILQ--RSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFA---GPVERFFVDPVMKKPMVNSAISLTGFALVGG 395 (1171)
Q Consensus 321 ~Vgil~y--rs~~~~g~~~~~daLI~~LE~~G~~vipvf~~gl~~~---~~v~~~f~~~~~~~~~VDavIn~tgFsL~gg 395 (1171)
+|||++- ++.+. ...+..+.+++++.|++++- +..+.+.. ..++.+ .. ..||+||-....+-..
T Consensus 1 ~igvv~~~~~~~~~---~~~~~gi~~~~~~~g~~~~~-~~~~~~~~~~~~~i~~l-~~-----~~vdgii~~~~~~~~~- 69 (273)
T cd01541 1 NIGVITTYISDYIF---PSIIRGIESVLSEKGYSLLL-ASTNNDPERERKCLENM-LS-----QGIDGLIIEPTKSALP- 69 (273)
T ss_pred CeEEEeCCccchhH---HHHHHHHHHHHHHcCCEEEE-EeCCCCHHHHHHHHHHH-HH-----cCCCEEEEeccccccc-
Confidence 4788773 22222 36677889999999999974 33333322 123332 22 2489998643221100
Q ss_pred CCCCCchhHHHHhhhCCCcEEeE
Q 001056 396 PARQDHPRAIEALRKLDVPYIVA 418 (1171)
Q Consensus 396 pa~~~~~~~~~~L~~LnVPvl~a 418 (1171)
.......+.+++.++||+..
T Consensus 70 ---~~~~~~~~~~~~~~ipvV~~ 89 (273)
T cd01541 70 ---NPNIDLYLKLEKLGIPYVFI 89 (273)
T ss_pred ---cccHHHHHHHHHCCCCEEEE
Confidence 11123345578889998854
No 42
>PF04459 DUF512: Protein of unknown function (DUF512); InterPro: IPR007549 This is a domain of uncharacterised prokaryotic proteins. It is often found C-terminal to the radical SAM domain (IPR007197 from INTERPRO).
Probab=32.60 E-value=73 Score=35.12 Aligned_cols=97 Identities=19% Similarity=0.206 Sum_probs=66.1
Q ss_pred CCCceeecCccccccccCCCCCCCcEEEEEEEcccchhHHHHHHHHHHHhhcCCceEEEEEeehhhccChhhHHHHHHHh
Q 001056 52 GNGLFTQTSPEVRRIVPENRDNLPTVKIVYVVLEAQYQSALSAAVQALNQQVNYASYEVVGYLVEELRDVDTYKTFCKDL 131 (1171)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 131 (1171)
|=||-.....+.....+.-. ..+.++.++|+. .....+...++.+ ...++++++|.. ++...
T Consensus 75 GVGm~r~f~~e~~~~l~~l~--~~~~~v~ivTG~-la~~~l~~~~~~l-~~~~~~~v~V~~--------------V~N~f 136 (204)
T PF04459_consen 75 GVGMVRLFLDEWEEALRKLP--KKPRRVTIVTGV-LAYPFLKPLVEKL-NRIPGLEVEVVP--------------VKNRF 136 (204)
T ss_pred CeeEhHHHHHHHHHHHhhcC--CCCeeEEEEeeH-HHHHHHHHHHHHH-hccCCCeEEEEE--------------eecCC
Confidence 66787766666666666532 556688999885 4455678888888 556778888764 22233
Q ss_pred hcCCEEEEeccccHHHHHHHHHHHHHhhcccCEEEeccChhhHh
Q 001056 132 ENANIFIGSLIFVEELALKIKAAVEKERDRLDAVLVFPSMPEVM 175 (1171)
Q Consensus 132 ~~ad~~~~sllf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~v~ 175 (1171)
=...|-++.||-..|+++.+.. .+..|.+++ |.+|
T Consensus 137 FG~~ItVaGLLTg~Dii~~L~~-----~~~~d~lll----P~~m 171 (204)
T PF04459_consen 137 FGGTITVAGLLTGQDIIEQLKG-----KELGDLLLL----PDVM 171 (204)
T ss_pred CCCCeEEeeCccHHHHHHHhCc-----CCCCCEEEE----CHHH
Confidence 3566889999999997665544 333477777 7777
No 43
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=32.34 E-value=3.6e+02 Score=32.88 Aligned_cols=90 Identities=14% Similarity=0.083 Sum_probs=48.4
Q ss_pred eEEEEeeccccccCCChHHHHHHHHHHHC-----CCcEEEEEecCCCCc------hhhh---HhhccccCCCccceeeee
Q 001056 321 VIGLILQRSHIVTGDDSHYVAVIMELEAR-----GAKVIPIFAGGLDFA------GPVE---RFFVDPVMKKPMVNSAIS 386 (1171)
Q Consensus 321 ~Vgil~yrs~~~~g~~~~~daLI~~LE~~-----G~~vipvf~~gl~~~------~~v~---~~f~~~~~~~~~VDavIn 386 (1171)
.|+|+.--..-+-| ..+++++++++++ |..|++|-+.|+..+ .+++ +.+........ ..--||
T Consensus 88 ~I~v~ttC~~~iiG--dDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~gs~~~G~~~a~~al~~~l~~~~~~~~-~~~~VN 164 (435)
T cd01974 88 MIAVSTTCMAEVIG--DDLNAFIKNAKNKGSIPADFPVPFANTPSFVGSHITGYDNMVKGILTHLTEGSGGAG-KNGKLN 164 (435)
T ss_pred EEEEeCCchHhhhh--ccHHHHHHHHHHhccCCCCCeEEEecCCCCccCHHHHHHHHHHHHHHHHhcccCCCC-CCCeEE
Confidence 46666443333333 3578899998877 688888877665421 1122 22222111101 122456
Q ss_pred ccc-ccccCCCCCCCchhHHHHhhhCCCcEEe
Q 001056 387 LTG-FALVGGPARQDHPRAIEALRKLDVPYIV 417 (1171)
Q Consensus 387 ~tg-FsL~ggpa~~~~~~~~~~L~~LnVPvl~ 417 (1171)
+.+ |. .+. .|..+-.++|+++++.+..
T Consensus 165 li~~~~---~~~-d~~~el~~lL~~~Gl~~~~ 192 (435)
T cd01974 165 IIPGFD---TYA-GNMREIKRLLELMGVDYTI 192 (435)
T ss_pred EECCCC---CCc-chHHHHHHHHHHcCCCEEE
Confidence 543 32 121 1245677899999999863
No 44
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=31.92 E-value=88 Score=35.87 Aligned_cols=63 Identities=17% Similarity=0.209 Sum_probs=36.2
Q ss_pred CCChHHHHHHHHHHHCC-CcEEEEEecCCCCchhhhHhhccccCCCccceeeeecccccccCCCC
Q 001056 334 GDDSHYVAVIMELEARG-AKVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISLTGFALVGGPA 397 (1171)
Q Consensus 334 g~~~~~daLI~~LE~~G-~~vipvf~~gl~~~~~v~~~f~~~~~~~~~VDavIn~tgFsL~ggpa 397 (1171)
.+.+-.++|-++||.+. ..|. +...-+...+.+++.+..-......||++||..||+..|.-.
T Consensus 38 R~~~kL~~la~~l~~~~~v~v~-vi~~DLs~~~~~~~l~~~l~~~~~~IdvLVNNAG~g~~g~f~ 101 (265)
T COG0300 38 RREDKLEALAKELEDKTGVEVE-VIPADLSDPEALERLEDELKERGGPIDVLVNNAGFGTFGPFL 101 (265)
T ss_pred CcHHHHHHHHHHHHHhhCceEE-EEECcCCChhHHHHHHHHHHhcCCcccEEEECCCcCCccchh
Confidence 35667788888888865 3322 222233322344443322112224599999999998876433
No 45
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=30.50 E-value=2.5e+02 Score=34.54 Aligned_cols=73 Identities=14% Similarity=0.102 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHC--------CCcEEEEEecCCCCc------hhhhH---hhccccCCCccceeeeecccccccCCCCCCC
Q 001056 338 HYVAVIMELEAR--------GAKVIPIFAGGLDFA------GPVER---FFVDPVMKKPMVNSAISLTGFALVGGPARQD 400 (1171)
Q Consensus 338 ~~daLI~~LE~~--------G~~vipvf~~gl~~~------~~v~~---~f~~~~~~~~~VDavIn~tgFsL~ggpa~~~ 400 (1171)
.++++|+.++++ +..++||-+.|+... .+++. .|.. ..+ .+--||+.+.... ..|
T Consensus 105 Di~~vv~~~~~~~~~e~~~~~~~vi~v~tpgF~Gs~~~G~~~a~~ali~~~~~--~~~--~~~~VNii~~~~~----~~D 176 (454)
T cd01973 105 DIEGVIRKLNEALKEEFPDREVHLIPVHTPSFKGSMVTGYDEAVRSVVKTIAK--KGA--PSGKLNVFTGWVN----PGD 176 (454)
T ss_pred CHHHHHHHHHhhhhhccCCCCCeEEEeeCCCcCCCHHHHHHHHHHHHHHHhcc--cCC--CCCcEEEECCCCC----hHH
Confidence 567788877543 677777776666431 12222 2222 111 2335676542221 134
Q ss_pred chhHHHHhhhCCCcEEeE
Q 001056 401 HPRAIEALRKLDVPYIVA 418 (1171)
Q Consensus 401 ~~~~~~~L~~LnVPvl~a 418 (1171)
..+-.++|+++|+-|...
T Consensus 177 ~~ei~~lL~~~Gl~v~~~ 194 (454)
T cd01973 177 VVELKHYLSEMDVEANIL 194 (454)
T ss_pred HHHHHHHHHHcCCCEEEe
Confidence 556678999999998854
No 46
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=30.20 E-value=1.2e+02 Score=34.82 Aligned_cols=85 Identities=14% Similarity=0.101 Sum_probs=49.7
Q ss_pred CCeEEEEeecccc-ccCCChHHHHHHHHHHHCCCcEEEEEecCCCCchhhhHhhccccCCCccceeeeecccccccCCCC
Q 001056 319 APVIGLILQRSHI-VTGDDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISLTGFALVGGPA 397 (1171)
Q Consensus 319 ~p~Vgil~yrs~~-~~g~~~~~daLI~~LE~~G~~vipvf~~gl~~~~~v~~~f~~~~~~~~~VDavIn~tgFsL~ggpa 397 (1171)
+.+|+||+-...- -.-...-..++.++|++.|.+|+++-..+. ..+.+. . +..+|++++.. -| ..
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~~~~---~~~~~l-~-----~~~~d~vf~~l----hG-~~ 68 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGK---ELVAKL-L-----ELKPDKCFVAL----HG-ED 68 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcCCch---hHHHHh-h-----ccCCCEEEEeC----CC-CC
Confidence 3479999863211 011123345789999999999987743221 112221 1 12489998843 22 22
Q ss_pred CCCchhHHHHhhhCCCcEEeE
Q 001056 398 RQDHPRAIEALRKLDVPYIVA 418 (1171)
Q Consensus 398 ~~~~~~~~~~L~~LnVPvl~a 418 (1171)
+.+ .....+|+.+|+||+-.
T Consensus 69 ge~-~~i~~~le~~gip~~Gs 88 (296)
T PRK14569 69 GEN-GRVSALLEMLEIKHTSS 88 (296)
T ss_pred CCC-hHHHHHHHHcCCCeeCC
Confidence 222 23557999999999854
No 47
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=29.86 E-value=1.5e+02 Score=33.85 Aligned_cols=82 Identities=16% Similarity=0.196 Sum_probs=48.1
Q ss_pred eEEEEeeccccccC-CChHHHHHHHHHHHCCCcEEEEEecCCCCchhhhHhhccccCCCccceeeeecccccccCCCCCC
Q 001056 321 VIGLILQRSHIVTG-DDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISLTGFALVGGPARQ 399 (1171)
Q Consensus 321 ~Vgil~yrs~~~~g-~~~~~daLI~~LE~~G~~vipvf~~gl~~~~~v~~~f~~~~~~~~~VDavIn~tgFsL~ggpa~~ 399 (1171)
+|+|++-..+-.-. ...-...++++|+++|.+|.++-.. ..+.+.+.. ..+|+|++... |....
T Consensus 6 ~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~-----~~~~~~~~~-----~~~D~v~~~~~----g~~~~- 70 (304)
T PRK01372 6 KVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPG-----EDIAAQLKE-----LGFDRVFNALH----GRGGE- 70 (304)
T ss_pred EEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecC-----cchHHHhcc-----CCCCEEEEecC----CCCCC-
Confidence 68988843221111 1234578999999999999987422 112222211 24899998631 11111
Q ss_pred CchhHHHHhhhCCCcEEeE
Q 001056 400 DHPRAIEALRKLDVPYIVA 418 (1171)
Q Consensus 400 ~~~~~~~~L~~LnVPvl~a 418 (1171)
+ .....+|+.+++||+..
T Consensus 71 ~-~~~~~~le~~gi~~~g~ 88 (304)
T PRK01372 71 D-GTIQGLLELLGIPYTGS 88 (304)
T ss_pred c-cHHHHHHHHcCCCccCC
Confidence 1 22346899999999854
No 48
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=29.05 E-value=1.9e+02 Score=31.63 Aligned_cols=82 Identities=20% Similarity=0.242 Sum_probs=46.2
Q ss_pred eEEEEeeccccccCCChHHHHHHHHHHHCCCcEEEEEecCCCCc---hhhhHhhccccCCCccceeeeecccccccCCCC
Q 001056 321 VIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFA---GPVERFFVDPVMKKPMVNSAISLTGFALVGGPA 397 (1171)
Q Consensus 321 ~Vgil~yrs~~~~g~~~~~daLI~~LE~~G~~vipvf~~gl~~~---~~v~~~f~~~~~~~~~VDavIn~tgFsL~ggpa 397 (1171)
+|||++.... ..-....+.++.+++++.|++++ ++....+.. ..++. +.. ..||+||-..+.
T Consensus 1 ~Igvv~~~~~-~~~~~~~~~~i~~~a~~~g~~~~-~~~~~~~~~~~~~~i~~-l~~-----~~vdgii~~~~~------- 65 (269)
T cd06281 1 TIGCLVSDIT-NPLLAQLFSGAEDRLRAAGYSLL-IANSLNDPERELEILRS-FEQ-----RRMDGIIIAPGD------- 65 (269)
T ss_pred CEEEEecCCc-cccHHHHHHHHHHHHHHcCCEEE-EEeCCCChHHHHHHHHH-HHH-----cCCCEEEEecCC-------
Confidence 4788874311 11124567788899999999977 443333321 11222 221 248988864321
Q ss_pred CCCchhHHHHhhhCCCcEEeE
Q 001056 398 RQDHPRAIEALRKLDVPYIVA 418 (1171)
Q Consensus 398 ~~~~~~~~~~L~~LnVPvl~a 418 (1171)
.+.+...+.+++.|+||+..
T Consensus 66 -~~~~~~~~~~~~~~ipvV~i 85 (269)
T cd06281 66 -ERDPELVDALASLDLPIVLL 85 (269)
T ss_pred -CCcHHHHHHHHhCCCCEEEE
Confidence 11223456778889998855
No 49
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=28.88 E-value=6.2e+02 Score=31.89 Aligned_cols=92 Identities=9% Similarity=0.087 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHC--CCcEEEEEecCCCC-------chhhhHhh---ccccCCCccceeeeecccccccCCCCCCCchhH
Q 001056 337 SHYVAVIMELEAR--GAKVIPIFAGGLDF-------AGPVERFF---VDPVMKKPMVNSAISLTGFALVGGPARQDHPRA 404 (1171)
Q Consensus 337 ~~~daLI~~LE~~--G~~vipvf~~gl~~-------~~~v~~~f---~~~~~~~~~VDavIn~tgFsL~ggpa~~~~~~~ 404 (1171)
+.+++++++.+++ |..||||-+.|+.. +.+++.++ ...........--||+.|-... .+|...-
T Consensus 145 DDi~av~k~~~~~~~~~pVi~v~tpGF~G~~~~gg~~~a~~ali~~~v~~~~~~~~~~~~VNliG~~n~----~gD~~ei 220 (513)
T TIGR01861 145 DDIAAIAKEVMEEMPDVDIFVCNSPGFAGPSQSGGHHKINIAWINQKVGTVEPEIKGKHVINYVGEYNI----QGDQEVM 220 (513)
T ss_pred CCHHHHHHHHHHhcCCCcEEEEeCCCccCccccchHHHHHHHHHHHhhcccCcccCCCCeEEEeCCCCC----ccCHHHH
Confidence 3678899888765 78899887766532 11233333 1100000111345676542121 2345566
Q ss_pred HHHhhhCCCcEEeEecCCCCCHHHHhcCC
Q 001056 405 IEALRKLDVPYIVALPLVFQTTEEWLNST 433 (1171)
Q Consensus 405 ~~~L~~LnVPvl~ai~l~~qt~eeW~~s~ 433 (1171)
..+|+++++.|+..++ -..+.++++...
T Consensus 221 k~lLe~~Gl~v~~~~~-gg~t~~ei~~~~ 248 (513)
T TIGR01861 221 VDYFQRMGIQVLSTFT-GNGSYDDLRGMH 248 (513)
T ss_pred HHHHHHCCCeEEEEeC-CCCCHHHHHhhc
Confidence 7899999999996664 467889988653
No 50
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=28.42 E-value=1.3e+02 Score=34.55 Aligned_cols=83 Identities=13% Similarity=0.041 Sum_probs=49.1
Q ss_pred eEEEEeecccc-ccCCChHHHHHHHHHHHCCCcEEEEEecCCCCchhhhHhhccccCCCccceeeeecccccccCCCCCC
Q 001056 321 VIGLILQRSHI-VTGDDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISLTGFALVGGPARQ 399 (1171)
Q Consensus 321 ~Vgil~yrs~~-~~g~~~~~daLI~~LE~~G~~vipvf~~gl~~~~~v~~~f~~~~~~~~~VDavIn~tgFsL~ggpa~~ 399 (1171)
+|+|||-...- -.-...-..+++++|++.|.+|.++.... ..+.. + .....+|+|+|... |. .+.
T Consensus 2 ~v~v~~gg~s~e~~~sl~s~~~i~~al~~~g~~~~~i~~~~----~~~~~-~----~~~~~~D~v~~~~~----g~-~ge 67 (299)
T PRK14571 2 RVALLMGGVSREREISLRSGERVKKALEKLGYEVTVFDVDE----DFLKK-V----DQLKSFDVVFNVLH----GT-FGE 67 (299)
T ss_pred eEEEEeCCCCCCccchHHHHHHHHHHHHHcCCeEEEEccCc----hHHHH-h----hhccCCCEEEEeCC----CC-CCC
Confidence 48888754211 00112345689999999999999886431 11111 1 11134799998642 22 112
Q ss_pred CchhHHHHhhhCCCcEEeE
Q 001056 400 DHPRAIEALRKLDVPYIVA 418 (1171)
Q Consensus 400 ~~~~~~~~L~~LnVPvl~a 418 (1171)
+ .....+|+.+|+||+..
T Consensus 68 ~-~~~~~~le~~gip~~G~ 85 (299)
T PRK14571 68 D-GTLQAILDFLGIRYTGS 85 (299)
T ss_pred c-cHHHHHHHHcCCCccCC
Confidence 2 23567999999999864
No 51
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=28.38 E-value=1.5e+02 Score=34.46 Aligned_cols=64 Identities=19% Similarity=0.137 Sum_probs=41.1
Q ss_pred eEEEEeeccccccCCChHHHHHHHHHHHCCCcEEEEEecCCC-----Cc-----hhhhHhhccccCCCccceeeeeccc
Q 001056 321 VIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLD-----FA-----GPVERFFVDPVMKKPMVNSAISLTG 389 (1171)
Q Consensus 321 ~Vgil~yrs~~~~g~~~~~daLI~~LE~~G~~vipvf~~gl~-----~~-----~~v~~~f~~~~~~~~~VDavIn~tg 389 (1171)
+|+|+--.+.........++.-|+.|+++|++|+.--....+ .+ ..+.++|.+ +.||+|+.+.|
T Consensus 2 ~I~ivAPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~~~~Ra~dL~~a~~D-----p~i~aI~~~rG 75 (308)
T cd07062 2 TIAVVSPSSGIPGELPHRLERAKKRLENLGFEVVEGPNALKGDKYLSASPEERAEELMAAFAD-----PSIKAIIPTIG 75 (308)
T ss_pred eEEEEeCCCCCcccCHHHHHHHHHHHHhCCCEEEEecccccccccccCCHHHHHHHHHHHhcC-----CCCCEEEECCc
Confidence 688887766543223567889999999999998854332111 11 123456655 45899998754
No 52
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=28.18 E-value=1.9e+02 Score=31.35 Aligned_cols=84 Identities=13% Similarity=0.063 Sum_probs=46.5
Q ss_pred eEEEEeeccccccCCChHHHHHHHHHHHCCCcEEEEEecCCCCchhhhHhhccccCCCccceeeeecccccccCCCCCCC
Q 001056 321 VIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISLTGFALVGGPARQD 400 (1171)
Q Consensus 321 ~Vgil~yrs~~~~g~~~~~daLI~~LE~~G~~vipvf~~gl~~~~~v~~~f~~~~~~~~~VDavIn~tgFsL~ggpa~~~ 400 (1171)
+||+++.... -......++.+-+++++.|++++-.. ...+.. ...+++.. . -...+|+||-.... .
T Consensus 1 ~Ig~i~~~~~-~~~~~~~~~gi~~~~~~~g~~~~~~~-~~~~~~-~~~~~~~~-l-~~~~vdgiii~~~~---------~ 66 (268)
T cd01575 1 LVAVLVPSLS-NSVFADVLQGISDVLEAAGYQLLLGN-TGYSPE-REEELLRT-L-LSRRPAGLILTGLE---------H 66 (268)
T ss_pred CEEEEeCCCc-chhHHHHHHHHHHHHHHcCCEEEEec-CCCCch-hHHHHHHH-H-HHcCCCEEEEeCCC---------C
Confidence 4788875311 11124566778889999999987433 333321 11122211 0 11248988875321 1
Q ss_pred chhHHHHhhhCCCcEEeE
Q 001056 401 HPRAIEALRKLDVPYIVA 418 (1171)
Q Consensus 401 ~~~~~~~L~~LnVPvl~a 418 (1171)
.......+++.++||+..
T Consensus 67 ~~~~~~~~~~~~ipvv~~ 84 (268)
T cd01575 67 TERTRQLLRAAGIPVVEI 84 (268)
T ss_pred CHHHHHHHHhcCCCEEEE
Confidence 124556788899999854
No 53
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=27.52 E-value=2.6e+02 Score=37.62 Aligned_cols=88 Identities=15% Similarity=0.170 Sum_probs=51.7
Q ss_pred eEEEEeeccccccCCChHHHHHHHHHHHC-----CCcEEEEEecCCCCc------hhhhH---hhccccCCCccceeeee
Q 001056 321 VIGLILQRSHIVTGDDSHYVAVIMELEAR-----GAKVIPIFAGGLDFA------GPVER---FFVDPVMKKPMVNSAIS 386 (1171)
Q Consensus 321 ~Vgil~yrs~~~~g~~~~~daLI~~LE~~-----G~~vipvf~~gl~~~------~~v~~---~f~~~~~~~~~VDavIn 386 (1171)
.|+|+.--..-+-| +.++++|++++++ |..||||-+.|+... .+++. .|.. ... ...--||
T Consensus 574 ~I~V~tTc~~eiIG--DDi~~vi~~~~~~~~~~~~~pvi~v~tpgF~Gs~~~G~~~a~~aiv~~~~~--~~~-~~~~~VN 648 (917)
T PRK14477 574 VIGVMTTGLTETMG--DDVRSAIVQFREEHPELDDVPVVWASTPDYCGSLQEGYAAAVEAIVATLPE--PGE-RIPGQVN 648 (917)
T ss_pred EEEEECCchHhhhh--cCHHHHHHHHHhhccccCCCeEEEeeCCCCccCHHHHHHHHHHHHHHHhcc--ccC-CCCCcEE
Confidence 67776543332333 3578999999875 889999988776431 22322 2322 111 1223466
Q ss_pred cc-cccccCCCCCCCchhHHHHhhhCCCcEEe
Q 001056 387 LT-GFALVGGPARQDHPRAIEALRKLDVPYIV 417 (1171)
Q Consensus 387 ~t-gFsL~ggpa~~~~~~~~~~L~~LnVPvl~ 417 (1171)
+. ++.+. ..|-.+-.++|+++++.|+.
T Consensus 649 li~~~~~~----~gD~~eik~lL~~~Gl~v~~ 676 (917)
T PRK14477 649 ILPGAHLT----PADVEEIKEIVEAFGLDPVV 676 (917)
T ss_pred EeCCCCCC----hhhHHHHHHHHHHcCCceEE
Confidence 54 33332 12556667899999999974
No 54
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=27.37 E-value=1.3e+02 Score=32.34 Aligned_cols=68 Identities=13% Similarity=0.082 Sum_probs=42.3
Q ss_pred EEEEEEEcccchhHHHHHHHHHHHhhcCCceEEEEEeehhhccChhhHHHHHHHh--hcCCEEEEeccccHHHHHHHH
Q 001056 77 VKIVYVVLEAQYQSALSAAVQALNQQVNYASYEVVGYLVEELRDVDTYKTFCKDL--ENANIFIGSLIFVEELALKIK 152 (1171)
Q Consensus 77 ~~~v~v~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~ad~~~~sllf~~~~~~~~~ 152 (1171)
.+|.++ ..-...++++++.|++++|++++. ++ ..-. ++++.+++.+.| +++|++|..|=... |-.|+.
T Consensus 49 ~~vfll---G~~~~v~~~~~~~l~~~yP~l~i~--g~-~g~f-~~~~~~~i~~~I~~s~~dil~VglG~Pk-QE~~~~ 118 (177)
T TIGR00696 49 LPIFLY---GGKPDVLQQLKVKLIKEYPKLKIV--GA-FGPL-EPEERKAALAKIARSGAGIVFVGLGCPK-QEIWMR 118 (177)
T ss_pred CeEEEE---CCCHHHHHHHHHHHHHHCCCCEEE--EE-CCCC-ChHHHHHHHHHHHHcCCCEEEEEcCCcH-hHHHHH
Confidence 467777 556677888999999999997654 32 1112 233333344444 57899999976633 224443
No 55
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=27.26 E-value=88 Score=35.43 Aligned_cols=75 Identities=24% Similarity=0.308 Sum_probs=47.7
Q ss_pred CChHHHHHHHHHHHCCCcEEEEEe---------------cCCCCchhhhHhhccccCCCccceeeeecc-cccccCCCCC
Q 001056 335 DDSHYVAVIMELEARGAKVIPIFA---------------GGLDFAGPVERFFVDPVMKKPMVNSAISLT-GFALVGGPAR 398 (1171)
Q Consensus 335 ~~~~~daLI~~LE~~G~~vipvf~---------------~gl~~~~~v~~~f~~~~~~~~~VDavIn~t-gFsL~ggpa~ 398 (1171)
-|.--..|++.|.++|..++.-.+ +++.....+++|+.+ ..|++||..| -|+..
T Consensus 10 GT~egr~la~~L~~~g~~v~~Svat~~g~~~~~~~~v~~G~l~~~~~l~~~l~~-----~~i~~VIDATHPfA~~----- 79 (248)
T PRK08057 10 GTSEARALARALAAAGVDIVLSLAGRTGGPADLPGPVRVGGFGGAEGLAAYLRE-----EGIDLVIDATHPYAAQ----- 79 (248)
T ss_pred chHHHHHHHHHHHhCCCeEEEEEccCCCCcccCCceEEECCCCCHHHHHHHHHH-----CCCCEEEECCCccHHH-----
Confidence 355556688888888875553332 333222345566653 3589999976 56542
Q ss_pred CCchhHHHHhhhCCCcEEeEec
Q 001056 399 QDHPRAIEALRKLDVPYIVALP 420 (1171)
Q Consensus 399 ~~~~~~~~~L~~LnVPvl~ai~ 420 (1171)
-+..+.++=+++|+||+.-..
T Consensus 80 -is~~a~~ac~~~~ipyiR~eR 100 (248)
T PRK08057 80 -ISANAAAACRALGIPYLRLER 100 (248)
T ss_pred -HHHHHHHHHHHhCCcEEEEeC
Confidence 234566788999999997653
No 56
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=27.24 E-value=4e+02 Score=32.84 Aligned_cols=91 Identities=12% Similarity=0.002 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHC--CCcEEEEEecCCCC-c------hhh---hHhhccccCCCccceeeeecccccccCCCCCCCchhHH
Q 001056 338 HYVAVIMELEAR--GAKVIPIFAGGLDF-A------GPV---ERFFVDPVMKKPMVNSAISLTGFALVGGPARQDHPRAI 405 (1171)
Q Consensus 338 ~~daLI~~LE~~--G~~vipvf~~gl~~-~------~~v---~~~f~~~~~~~~~VDavIn~tgFsL~ggpa~~~~~~~~ 405 (1171)
.+++++++++++ +..|+||-+.|+.. . .+. -+.+...........--||+.|-... ..|..+-.
T Consensus 143 Di~~v~~e~~~~~~~~pvv~v~t~gf~g~s~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiiG~~~~----~gd~~el~ 218 (457)
T TIGR01284 143 DIDAIAREVMEEIPDVDVFAINAPGFAGPSQSKGHHVANITWINDKVGTAEPEITTEYDVNLIGEYNI----QGDLWVLK 218 (457)
T ss_pred CHHHHHHHHHHhcCCCeEEEeeCCCcCCcccchHHHHHHHHHHHHHhCccCcccCCCCeEEEEccCCc----hhhHHHHH
Confidence 578899998876 37788886666542 1 111 12222211111111234666542111 12445566
Q ss_pred HHhhhCCCcEEeEecCCCCCHHHHhcCC
Q 001056 406 EALRKLDVPYIVALPLVFQTTEEWLNST 433 (1171)
Q Consensus 406 ~~L~~LnVPvl~ai~l~~qt~eeW~~s~ 433 (1171)
.+|+++|+-++..++ ...+.++++...
T Consensus 219 ~lL~~~Gl~v~~~~~-g~~s~~ei~~~~ 245 (457)
T TIGR01284 219 KYFERMGIQVLSTFT-GNGCYDELRWMH 245 (457)
T ss_pred HHHHHcCCeEEEEEC-CCCCHHHHHhcc
Confidence 899999999997775 457889999764
No 57
>PF13271 DUF4062: Domain of unknown function (DUF4062)
Probab=27.17 E-value=1.2e+02 Score=28.25 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=18.1
Q ss_pred ccChhhHHHHHHHhhcCCEEEE
Q 001056 118 LRDVDTYKTFCKDLENANIFIG 139 (1171)
Q Consensus 118 ~~~~~~~~~~~~~i~~ad~~~~ 139 (1171)
.++...++-|.+.|.+||+||+
T Consensus 37 a~~~~~~~~cl~~v~~cDifI~ 58 (83)
T PF13271_consen 37 ASDQSPLEICLKEVDECDIFIL 58 (83)
T ss_pred CCCCCHHHHHHHHHhhCCEEEE
Confidence 3455668999999999999887
No 58
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=27.15 E-value=1.8e+02 Score=31.98 Aligned_cols=84 Identities=18% Similarity=0.214 Sum_probs=46.0
Q ss_pred CeEEEEeeccc----ccc--CCChHHHHHHHHHHHCCCcEEEEEecCCCCchhhhHhhccccCCCccceeeeeccccccc
Q 001056 320 PVIGLILQRSH----IVT--GDDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISLTGFALV 393 (1171)
Q Consensus 320 p~Vgil~yrs~----~~~--g~~~~~daLI~~LE~~G~~vipvf~~gl~~~~~v~~~f~~~~~~~~~VDavIn~tgFsL~ 393 (1171)
.+|||++-+.. ..+ -....+.++.+++++.|+.++-..... +....+.+.+. ...+|+||-....
T Consensus 4 ~~i~vi~p~~~~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~v~~~~~-~~~~~~~~~l~-----~~~~dgiii~~~~--- 74 (275)
T cd06295 4 DTIALVVPEPHERDQSFSDPFFLSLLGGIADALAERGYDLLLSFVSS-PDRDWLARYLA-----SGRADGVILIGQH--- 74 (275)
T ss_pred eEEEEEecCccccccccCCchHHHHHHHHHHHHHHcCCEEEEEeCCc-hhHHHHHHHHH-----hCCCCEEEEeCCC---
Confidence 47999985421 111 123455668888888999987543322 11112222222 1347988764211
Q ss_pred CCCCCCCchhHHHHhhhCCCcEEeE
Q 001056 394 GGPARQDHPRAIEALRKLDVPYIVA 418 (1171)
Q Consensus 394 ggpa~~~~~~~~~~L~~LnVPvl~a 418 (1171)
......+.+++.|+||+..
T Consensus 75 ------~~~~~~~~~~~~~ipvV~~ 93 (275)
T cd06295 75 ------DQDPLPERLAETGLPFVVW 93 (275)
T ss_pred ------CChHHHHHHHhCCCCEEEE
Confidence 1123456778899999843
No 59
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=26.94 E-value=1.9e+02 Score=32.19 Aligned_cols=51 Identities=8% Similarity=0.079 Sum_probs=28.3
Q ss_pred CccccccccCCCCCCCcEEEEEEEcccchhHHHHHHHHHHHhhcC--CceEEEE
Q 001056 60 SPEVRRIVPENRDNLPTVKIVYVVLEAQYQSALSAAVQALNQQVN--YASYEVV 111 (1171)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~a~~~l~~~~~--~~~~~~~ 111 (1171)
.|..|-+.+.. +....+||++|++.....|.....++.+.+..+ +.++++.
T Consensus 11 ~~~~~~~~~~~-~~~~~~kI~~I~GSlR~~S~n~~la~~~~~~~~~~g~~v~~i 63 (219)
T TIGR02690 11 EPALRPLFSAT-HKPHIPRILLLYGSLRERSYSRLLAEEAARLLGCEGRETRIF 63 (219)
T ss_pred ccchhhccCCC-CCCCCCEEEEEECCCCCcchHHHHHHHHHHHHhhcCCEEEEe
Confidence 34444444432 444458999999876666555544444444333 4555554
No 60
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=26.45 E-value=2.5e+02 Score=27.58 Aligned_cols=69 Identities=16% Similarity=0.126 Sum_probs=34.3
Q ss_pred HHHCCCcEEEEEecCCCCchhhhHhhccccCCCccceeeeecccccccCCCCCCCchhHHHHhhhCCCcEEeEe
Q 001056 346 LEARGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISLTGFALVGGPARQDHPRAIEALRKLDVPYIVAL 419 (1171)
Q Consensus 346 LE~~G~~vipvf~~gl~~~~~v~~~f~~~~~~~~~VDavIn~tgFsL~ggpa~~~~~~~~~~L~~LnVPvl~ai 419 (1171)
|++.|+.+.+|.......++.+.+.+.+ +-.||.|||+.. .....+...+...-...--+.|||++..+
T Consensus 38 L~~~Gi~~~~v~~~~~~g~~~i~~~i~~----~g~idlVIn~~~-~~~~~~~~~dg~~iRR~A~~~~Ip~~T~~ 106 (112)
T cd00532 38 LADAGIPVRAVSKRHEDGEPTVDAAIAE----KGKFDVVINLRD-PRRDRCTDEDGTALLRLARLYKIPVTTPN 106 (112)
T ss_pred HHHcCCceEEEEecCCCCCcHHHHHHhC----CCCEEEEEEcCC-CCcccccCCChHHHHHHHHHcCCCEEECH
Confidence 5567777776654322122334444432 034899999853 11100112222222233346799998654
No 61
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=26.12 E-value=3.1e+02 Score=33.80 Aligned_cols=89 Identities=16% Similarity=0.123 Sum_probs=46.1
Q ss_pred eEEEEeeccccccCCChHHHHHHHHHHH--------CCCcEEEEEecCCCCc------hhhhH---hhccccCCCcccee
Q 001056 321 VIGLILQRSHIVTGDDSHYVAVIMELEA--------RGAKVIPIFAGGLDFA------GPVER---FFVDPVMKKPMVNS 383 (1171)
Q Consensus 321 ~Vgil~yrs~~~~g~~~~~daLI~~LE~--------~G~~vipvf~~gl~~~------~~v~~---~f~~~~~~~~~VDa 383 (1171)
.|+|+.--..-+-| +.++++|+++++ .|..|+||-+.|+... .+++. .+... +....-
T Consensus 93 ~I~V~ttC~~eiIG--DDi~~v~~~~~~~~~~e~~~~~~~vv~v~tpgF~gs~~~G~~~a~~ali~~~~~~---~~~~~~ 167 (457)
T TIGR02932 93 VIPIITTCSTETIG--DDIEGSIRKVNRALKKEFPDRKIKLVPVHTPSFKGSQVTGYAECVKSVIKTIAAK---KGEPSG 167 (457)
T ss_pred EEEEECCchHHhhc--CCHHHHHHHHHhhhhhhcCCCCCeEEEeeCCCCcCcHHHHHHHHHHHHHHHHhhc---cCCCCC
Confidence 45555432222223 346777776532 2788888888776532 12222 22211 111223
Q ss_pred eeecccccccCCCCCCCchhHHHHhhhCCCcEEeE
Q 001056 384 AISLTGFALVGGPARQDHPRAIEALRKLDVPYIVA 418 (1171)
Q Consensus 384 vIn~tgFsL~ggpa~~~~~~~~~~L~~LnVPvl~a 418 (1171)
-||+.+.... | .|..+-.++|+++|+-|...
T Consensus 168 ~VNii~~~~~--~--gD~~eik~lL~~~Gl~vn~l 198 (457)
T TIGR02932 168 KLNVFPGWVN--P--GDVVLLKHYFSEMGVDANIL 198 (457)
T ss_pred cEEEECCCCC--h--HHHHHHHHHHHHcCCCEEEE
Confidence 4676532221 1 24456678999999998754
No 62
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=25.30 E-value=3.8e+02 Score=33.15 Aligned_cols=88 Identities=22% Similarity=0.215 Sum_probs=49.0
Q ss_pred eEEEEeeccccccCCChHHHHHHHHHHHC---------CCcEEEEEecCCCCc------hhhhHhh---ccccCCCccce
Q 001056 321 VIGLILQRSHIVTGDDSHYVAVIMELEAR---------GAKVIPIFAGGLDFA------GPVERFF---VDPVMKKPMVN 382 (1171)
Q Consensus 321 ~Vgil~yrs~~~~g~~~~~daLI~~LE~~---------G~~vipvf~~gl~~~------~~v~~~f---~~~~~~~~~VD 382 (1171)
.|+|+.--..-+-| +.++++|++++++ +..++||-+.|+..+ .+++.++ .. ..+ ..
T Consensus 96 ~i~v~ttc~~eiiG--DDi~~v~~~~~~~~~~~~~p~~~~~ii~v~tpgF~gs~~~Gy~~a~~ali~~~~~--~~~--~~ 169 (461)
T TIGR02931 96 VVPIITTCSTEIIG--DDVDGLISKLNEELLKEKFPDREVHLIPIHTPSFVGSMITGYDVAVHDFVKHFAK--KDK--PN 169 (461)
T ss_pred EEEEECCchHHhhh--cCHHHHHHHHHhhhcccccCCCCCeEEEeeCCCCCCcHHHHHHHHHHHHHHHHcc--CCC--CC
Confidence 56666433222223 3577888888765 567888876666422 2233322 22 111 13
Q ss_pred eeeecccccccCCCCCCCchhHHHHhhhCCCcEEeE
Q 001056 383 SAISLTGFALVGGPARQDHPRAIEALRKLDVPYIVA 418 (1171)
Q Consensus 383 avIn~tgFsL~ggpa~~~~~~~~~~L~~LnVPvl~a 418 (1171)
--||+.+..+. ..|..+-.++|+++++-+...
T Consensus 170 ~~VNlig~~~~----~~D~~elk~lL~~~Gl~v~~l 201 (461)
T TIGR02931 170 DKINLITGWVN----PGDVKELKHLLEEMDIEANVL 201 (461)
T ss_pred CcEEEECCCCC----hhhHHHHHHHHHHcCCceEEe
Confidence 34676553222 234566678999999998843
No 63
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=24.92 E-value=1.6e+02 Score=34.66 Aligned_cols=93 Identities=18% Similarity=0.206 Sum_probs=50.4
Q ss_pred eEEEEeeccccccCCChHHHHHHHHHHHCCCcEEEEE-ecCCCCchhhhHhhccccCCCccceeeeecccccccCCCCCC
Q 001056 321 VIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIF-AGGLDFAGPVERFFVDPVMKKPMVNSAISLTGFALVGGPARQ 399 (1171)
Q Consensus 321 ~Vgil~yrs~~~~g~~~~~daLI~~LE~~G~~vipvf-~~gl~~~~~v~~~f~~~~~~~~~VDavIn~tgFsL~ggpa~~ 399 (1171)
.+-|+ +...... ...+.+...|+++|+.+. .+ ..+-.....+++.... -.+..+|+||.. +||.. -
T Consensus 24 r~liv-t~~~~~~---~~~~~v~~~L~~~~i~~~-~~~~~~~p~~~~v~~~~~~--~~~~~~D~IIav-----GGGS~-i 90 (351)
T cd08170 24 RALII-ADEFVLD---LVGAKIEESLAAAGIDAR-FEVFGGECTRAEIERLAEI--ARDNGADVVIGI-----GGGKT-L 90 (351)
T ss_pred eEEEE-ECHHHHH---HHHHHHHHHHHhCCCeEE-EEEeCCcCCHHHHHHHHHH--HhhcCCCEEEEe-----cCchh-h
Confidence 34444 4544433 688999999999999875 22 2221111223332211 112357999874 34432 3
Q ss_pred CchhHHHHhhhCCCcEEeEecCCCCCHHHH
Q 001056 400 DHPRAIEALRKLDVPYIVALPLVFQTTEEW 429 (1171)
Q Consensus 400 ~~~~~~~~L~~LnVPvl~ai~l~~qt~eeW 429 (1171)
|..+++..+ +++|++ ++|....|=.+|
T Consensus 91 D~aK~ia~~--~~~P~i-aIPTTagTgse~ 117 (351)
T cd08170 91 DTAKAVADY--LGAPVV-IVPTIASTDAPT 117 (351)
T ss_pred HHHHHHHHH--cCCCEE-EeCCccccCccc
Confidence 445555554 578977 666654444444
No 64
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=24.85 E-value=43 Score=38.95 Aligned_cols=72 Identities=24% Similarity=0.280 Sum_probs=46.5
Q ss_pred ecccccccChhHHHHHHHhCCeeccCCCCCceeeEEecccccCCCceeEEEecCcchhhhHHHHHHHHHHHHHHHHccCC
Q 001056 1032 GTDNIKTYGESLAQVLWMIGVRPVSDTFGRVNRVEPVSLEELGRPRIDVVVNCSGVFRDLFINQMNLLDRAVKMVAELDE 1111 (1171)
Q Consensus 1032 gtdtmrt~Ge~iAqiL~LlGvrPvwd~~GrV~g~ElIPL~ELgRPRIDVvv~iSGiFRD~Fp~~i~LlD~Av~~aA~lDE 1111 (1171)
..-|..++|--.-+-|.-. .-...+++..=+|=.|+|+.||-+||+|++||+.--. |--
T Consensus 142 ~~Tt~~sE~~~ylpyl~k~----l~e~Gvef~~r~v~~l~E~~~~~~DVivNCtGL~a~~-----------------L~g 200 (342)
T KOG3923|consen 142 HFTTYLSEGPKYLPYLKKR----LTENGVEFVQRRVESLEEVARPEYDVIVNCTGLGAGK-----------------LAG 200 (342)
T ss_pred eEEEeeccchhhhHHHHHH----HHhcCcEEEEeeeccHHHhccCCCcEEEECCcccccc-----------------ccC
Confidence 3445666665555444311 1123456666778889999999999999999986332 223
Q ss_pred CCCcchHHHHHHH
Q 001056 1112 PEEQNYVRKHALE 1124 (1171)
Q Consensus 1112 p~e~N~Vrkh~~~ 1124 (1171)
++++=+||-|+++
T Consensus 201 Dd~~yPiRGqVl~ 213 (342)
T KOG3923|consen 201 DDDLYPIRGQVLK 213 (342)
T ss_pred CcceeeccceEEE
Confidence 3348888877653
No 65
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=24.40 E-value=64 Score=36.07 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=28.8
Q ss_pred eEEEEeecCCCCCCCccccCCCChHHHHHHHHHHHHHCCCCCC
Q 001056 498 KLAITVFSFPPDKGNIGTAAYLNVFSSIFSVLKDLQRDGYNVE 540 (1171)
Q Consensus 498 KVAIil~nyPp~~g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~vg 540 (1171)
||.|+.+.|||..+..++ .+.++.+.|.+.||+|.
T Consensus 1 kil~~~~~~~p~~~G~~~--------~~~~l~~~L~~~g~~v~ 35 (374)
T cd03817 1 KIGIFTDTYLPQVNGVAT--------SIRRLAEELEKRGHEVY 35 (374)
T ss_pred CeeEeehhccCCCCCeeh--------HHHHHHHHHHHcCCeEE
Confidence 688999999997665443 67889999999999984
No 66
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=23.39 E-value=1.9e+02 Score=31.40 Aligned_cols=15 Identities=7% Similarity=0.326 Sum_probs=10.6
Q ss_pred EEEEEEEcccchhHH
Q 001056 77 VKIVYVVLEAQYQSA 91 (1171)
Q Consensus 77 ~~~v~v~~~~~~~~~ 91 (1171)
|||++|.+.+.-.|.
T Consensus 1 mkIl~I~GSpr~~S~ 15 (191)
T PRK10569 1 MRVITLAGSPRFPSR 15 (191)
T ss_pred CEEEEEEcCCCCCCh
Confidence 689999887654443
No 67
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=23.20 E-value=9.6e+02 Score=27.33 Aligned_cols=44 Identities=18% Similarity=0.314 Sum_probs=30.6
Q ss_pred CceEEEEeecCCCCC--CC-ccccCCCChHHHHHHHHHHHHHCCCCC
Q 001056 496 EKKLAITVFSFPPDK--GN-IGTAAYLNVFSSIFSVLKDLQRDGYNV 539 (1171)
Q Consensus 496 eKKVAIil~nyPp~~--g~-iGtAa~LDv~~Sl~~iL~~Lk~~GY~v 539 (1171)
..|||||=+..|... .+ .+.-.+.|..+++.+.+++||++|.|+
T Consensus 139 G~kIgviG~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~lr~~~~D~ 185 (281)
T cd07409 139 GEKIGIIGYTTPDTTELSSPGGKVKFLDEIEAAQKEADKLKAQGVNK 185 (281)
T ss_pred CEEEEEEEEecCcccccccCCCceEECCHHHHHHHHHHHHHhcCCCE
Confidence 457777766655321 11 122356888999999999999999777
No 68
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=22.95 E-value=2.4e+02 Score=30.62 Aligned_cols=84 Identities=18% Similarity=0.190 Sum_probs=45.7
Q ss_pred eEEEEeeccccccCCChHHHHHHHHHHHCCCcEEEEEecCCCCchhhhHhhccccCCCccceeeeecccccccCCCCCCC
Q 001056 321 VIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISLTGFALVGGPARQD 400 (1171)
Q Consensus 321 ~Vgil~yrs~~~~g~~~~~daLI~~LE~~G~~vipvf~~gl~~~~~v~~~f~~~~~~~~~VDavIn~tgFsL~ggpa~~~ 400 (1171)
+|||++-... ..--...+..+-+++++.|++++. +....+... ..+++.. .. ...||+||-... . .
T Consensus 1 ~i~vv~p~~~-~~~~~~~~~~i~~~~~~~g~~~~~-~~~~~~~~~-~~~~~~~-l~-~~~vdgiii~~~-------~--~ 66 (268)
T cd06273 1 TIGAIVPTLD-NAIFARVIQAFQETLAAHGYTLLV-ASSGYDLDR-EYAQARK-LL-ERGVDGLALIGL-------D--H 66 (268)
T ss_pred CeEEEeCCCC-CchHHHHHHHHHHHHHHCCCEEEE-ecCCCCHHH-HHHHHHH-HH-hcCCCEEEEeCC-------C--C
Confidence 5788875321 111235567888999999999884 333322211 1112111 00 124898885311 1 1
Q ss_pred chhHHHHhhhCCCcEEeE
Q 001056 401 HPRAIEALRKLDVPYIVA 418 (1171)
Q Consensus 401 ~~~~~~~L~~LnVPvl~a 418 (1171)
.+...+.+++.|+|++..
T Consensus 67 ~~~~~~~l~~~~iPvv~~ 84 (268)
T cd06273 67 SPALLDLLARRGVPYVAT 84 (268)
T ss_pred CHHHHHHHHhCCCCEEEE
Confidence 234566788999999864
No 69
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=22.65 E-value=1.6e+02 Score=34.26 Aligned_cols=82 Identities=16% Similarity=0.190 Sum_probs=44.2
Q ss_pred CCCCeEEEEeeccccccCCChHHHHHHHHHHHCCCcEEEEEecCCCCchhhhHhhccccCCCccceeeeecccccccCCC
Q 001056 317 PDAPVIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISLTGFALVGGP 396 (1171)
Q Consensus 317 ~~~p~Vgil~yrs~~~~g~~~~~daLI~~LE~~G~~vipvf~~gl~~~~~v~~~f~~~~~~~~~VDavIn~tgFsL~ggp 396 (1171)
.++.+|||++- +.-..+....++.|.+.|+++|-.+..++.+-+... -+ .+=+.||+.|++..=
T Consensus 207 ~~a~~~GIiv~-tl~~q~~~~~~~~l~~~l~~~gkk~y~~~~~~i~~~-kL--------~nf~eid~fV~~aCP------ 270 (307)
T PF01866_consen 207 KDAKTFGIIVG-TLGGQGYLELIKRLKKLLKKAGKKSYTLSVGEINPA-KL--------ANFPEIDAFVQIACP------ 270 (307)
T ss_dssp TT--EEEEEEE--STTT--HHHHHHHHHHHHHTT-EEEEEEESS--GG-GG--------TTS---SEEEE-S-T------
T ss_pred hcCCEEEEEEe-cCCCCCCHHHHHHHHHHHHHcCCEEEEEEECCCCHH-HH--------hcCcccCEEEEecCC------
Confidence 35679999975 333455778889999999999999999888766421 11 112348998887542
Q ss_pred CCCCchhHHHHhhhCCCcEEeEe
Q 001056 397 ARQDHPRAIEALRKLDVPYIVAL 419 (1171)
Q Consensus 397 a~~~~~~~~~~L~~LnVPvl~ai 419 (1171)
.-+....++...||+.+.
T Consensus 271 -----r~~idd~~~f~kPvltP~ 288 (307)
T PF01866_consen 271 -----RLSIDDSKDFYKPVLTPY 288 (307)
T ss_dssp -----HHHHT--S--SS-EE-HH
T ss_pred -----CcccCchhhcCCcccCHH
Confidence 123344578888998764
No 70
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=22.58 E-value=1.9e+02 Score=30.66 Aligned_cols=62 Identities=13% Similarity=0.149 Sum_probs=39.2
Q ss_pred cEEEEEEEcccchhHHHHHHHHHHHhhcCCceEEEEEeehhhccChhhHHHHHHHh--hcCCEEEEeccc
Q 001056 76 TVKIVYVVLEAQYQSALSAAVQALNQQVNYASYEVVGYLVEELRDVDTYKTFCKDL--ENANIFIGSLIF 143 (1171)
Q Consensus 76 ~~~~v~v~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~ad~~~~sllf 143 (1171)
..||.++ ..-...++++++.+++.+|++++. ++...-.. ++..+++.+.| .++|++|..|=.
T Consensus 46 ~~~v~ll---G~~~~~~~~~~~~l~~~yp~l~i~--g~~~g~~~-~~~~~~i~~~I~~~~pdiv~vglG~ 109 (171)
T cd06533 46 GLRVFLL---GAKPEVLEKAAERLRARYPGLKIV--GYHHGYFG-PEEEEEIIERINASGADILFVGLGA 109 (171)
T ss_pred CCeEEEE---CCCHHHHHHHHHHHHHHCCCcEEE--EecCCCCC-hhhHHHHHHHHHHcCCCEEEEECCC
Confidence 3567777 566777888899999999997664 32222221 12222234433 378999999766
No 71
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=22.44 E-value=9.2e+02 Score=28.61 Aligned_cols=159 Identities=14% Similarity=0.186 Sum_probs=0.0
Q ss_pred CCCCCeEEEEeeccccccCCChHHHHHHHHHHHCCC-cEEEEEecCCCCchhhhHhhccccCCCccceeeeecccccccC
Q 001056 316 GPDAPVIGLILQRSHIVTGDDSHYVAVIMELEARGA-KVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISLTGFALVG 394 (1171)
Q Consensus 316 ~~~~p~Vgil~yrs~~~~g~~~~~daLI~~LE~~G~-~vipvf~~gl~~~~~v~~~f~~~~~~~~~VDavIn~tgFsL~g 394 (1171)
..+.-+|||...-+| ..=.+-.+.+.++|.+.|. |+.-.+-++.......+..-.. -.....|+||-.+
T Consensus 27 ~~~~~~VaI~~~veH--paLd~~~~G~~~aLk~~G~~n~~i~~~na~~~~~~a~~iarq--l~~~~~dviv~i~------ 96 (322)
T COG2984 27 AADQITVAITQFVEH--PALDAAREGVKEALKDAGYKNVKIDYQNAQGDLGTAAQIARQ--LVGDKPDVIVAIA------ 96 (322)
T ss_pred cccceeEEEEEeecc--hhHHHHHHHHHHHHHhcCccCeEEEeecCCCChHHHHHHHHH--hhcCCCcEEEecC------
Q ss_pred CCCCCCchhHHHHhh-hCCCc-EEeEe--cCCCCCHHHHhcCCCCCChhhhhhheeccccCcceeeEEEEEecCCCCccc
Q 001056 395 GPARQDHPRAIEALR-KLDVP-YIVAL--PLVFQTTEEWLNSTLGLHPIQVALQVALPELDGGLEPIVFAGRDPRTGKAH 470 (1171)
Q Consensus 395 gpa~~~~~~~~~~L~-~LnVP-vl~ai--~l~~qt~eeW~~s~~GL~p~~~~~~ValPElDG~I~piv~~g~~~~~~~~~ 470 (1171)
.+.|+.+.+ -.|+| |+.++ |...+-..+|+.....++... ...
T Consensus 97 ------tp~Aq~~~s~~~~iPVV~aavtd~v~a~Lv~~~~~pg~NvTGvs---------------------------D~~ 143 (322)
T COG2984 97 ------TPAAQALVSATKTIPVVFAAVTDPVGAKLVKSLEQPGGNVTGVS---------------------------DLL 143 (322)
T ss_pred ------CHHHHHHHHhcCCCCEEEEccCchhhccCCccccCCCCceeecC---------------------------Ccc
Q ss_pred cchHHHHHHHHHHHHHHHcccCCCCCceEEEEeecCCCCCCCccccCCCChHHHHHHHHHH-HHHCCCCC
Q 001056 471 ALHKRVEQLCTRAIRWGELKRKTKAEKKLAITVFSFPPDKGNIGTAAYLNVFSSIFSVLKD-LQRDGYNV 539 (1171)
Q Consensus 471 pipeRi~~la~r~~~W~~LR~kpn~eKKVAIil~nyPp~~g~iGtAa~LDv~~Sl~~iL~~-Lk~~GY~v 539 (1171)
|+.++|+.+ +..-+.=|||.++| -|++.|.= |+.+.|++ +++.|+.|
T Consensus 144 ~v~q~i~li----------k~~~Pnak~Igv~Y---~p~E~ns~---------~l~eelk~~A~~~Gl~v 191 (322)
T COG2984 144 PVAQQIELI----------KALLPNAKSIGVLY---NPGEANSV---------SLVEELKKEARKAGLEV 191 (322)
T ss_pred hHHHHHHHH----------HHhCCCCeeEEEEe---CCCCcccH---------HHHHHHHHHHHHCCCEE
No 72
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=22.32 E-value=69 Score=36.34 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=28.9
Q ss_pred eEEEE-eecCCCCCCCccccCCCChHHHHHHHHHHHHHCCCCCC
Q 001056 498 KLAIT-VFSFPPDKGNIGTAAYLNVFSSIFSVLKDLQRDGYNVE 540 (1171)
Q Consensus 498 KVAIi-l~nyPp~~g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~vg 540 (1171)
||||| -+.|||..|.+++ .+.++.+.|++.||+|.
T Consensus 1 ~i~~i~~~~~~~~~gG~~~--------~~~~la~~L~~~g~~v~ 36 (363)
T cd04955 1 KIAIIGTRGIPAKYGGFET--------FVEELAPRLVARGHEVT 36 (363)
T ss_pred CeEEEecCcCCcccCcHHH--------HHHHHHHHHHhcCCCEE
Confidence 79998 5568888776664 88999999999999994
No 73
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=22.00 E-value=2.8e+02 Score=31.81 Aligned_cols=83 Identities=17% Similarity=0.162 Sum_probs=50.0
Q ss_pred EEEEEEcccchh-----HH------HHHHHHHHHhhcCC-ceEEEEEeehh--hccCh-hhHHHHHHHh-hcCCEEEEec
Q 001056 78 KIVYVVLEAQYQ-----SA------LSAAVQALNQQVNY-ASYEVVGYLVE--ELRDV-DTYKTFCKDL-ENANIFIGSL 141 (1171)
Q Consensus 78 ~~v~v~~~~~~~-----~~------~~~a~~~l~~~~~~-~~~~~~~~~~~--~~~~~-~~~~~~~~~i-~~ad~~~~sl 141 (1171)
+|+.+++|+.-. .. ...=++.+++..+. ..+.+.+|-.. ...|. .+++++++.+ +.||+||.-+
T Consensus 101 niL~l~GD~~~~g~~~~~~~~~~~~~~~Li~~i~~~~~~~~~i~va~~P~~hp~~~~~~~~~~~l~~Ki~aGA~f~iTQ~ 180 (287)
T PF02219_consen 101 NILALTGDPPKGGDHFAKPVFDFDYALDLIRLIRQEYGDDFSIGVAGYPEGHPEAPDFEAELKRLKKKIDAGADFIITQP 180 (287)
T ss_dssp EEEEESS-TSTTSSS----TTS-SSHHHHHHHHHHHHGGGSEEEEEE-TTHHTTCSSHHHHHHHHHHHHHTTESEEEEEE
T ss_pred eEEEecCCCCCCCccccCCCchhHHHHHHHHHHHHhcCcccccccccCCCCCccccCHHHHHHHHHHHHHCCCCEEeccc
Confidence 488888885322 11 11223445544332 56777776422 22232 3477887877 6899999999
Q ss_pred cccHHHHHHHHHHHHHhhc
Q 001056 142 IFVEELALKIKAAVEKERD 160 (1171)
Q Consensus 142 lf~~~~~~~~~~~~~~~~~ 160 (1171)
.|+-+.+..+.+.++....
T Consensus 181 ~fd~~~~~~~~~~~~~~g~ 199 (287)
T PF02219_consen 181 FFDAEAFERFLDRLREAGI 199 (287)
T ss_dssp -SSHHHHHHHHHHHHHTTH
T ss_pred cCCHHHHHHHHHHHHHcCC
Confidence 9999998888888877544
No 74
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=21.93 E-value=1.5e+02 Score=33.48 Aligned_cols=84 Identities=11% Similarity=0.071 Sum_probs=45.2
Q ss_pred eecCCCceeecCc-cccccccCCCCCCCcEEEEEEEcccchhHH-HHHHHHHHHhhcCCc-eEEEEEe-ehhhccChhhH
Q 001056 49 AVVGNGLFTQTSP-EVRRIVPENRDNLPTVKIVYVVLEAQYQSA-LSAAVQALNQQVNYA-SYEVVGY-LVEELRDVDTY 124 (1171)
Q Consensus 49 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~-~~~a~~~l~~~~~~~-~~~~~~~-~~~~~~~~~~~ 124 (1171)
+..|||.+...++ -.|+++... .+.. -||+||..-+..... ..+....+.+ .. + .++++.. ..+... -
T Consensus 2 ~~iGG~~~~~~~~~i~~~~~~la-g~~~-~rI~~iptAS~~~~~~~~~~~~~~~~-lG-~~~v~~l~i~~r~~a~----~ 73 (250)
T TIGR02069 2 VIIGGAEDKVGDREILREFVSRA-GGED-AIIVIITSASEEPREVGERYITIFSR-LG-VKEVKILDVREREDAS----D 73 (250)
T ss_pred eEEeCccccCChHHHHHHHHHHh-CCCC-ceEEEEeCCCCChHHHHHHHHHHHHH-cC-CceeEEEecCChHHcc----C
Confidence 3457777774433 667777665 3333 389999765543333 2233333333 22 2 2333321 112222 3
Q ss_pred HHHHHHhhcCCEEEEe
Q 001056 125 KTFCKDLENANIFIGS 140 (1171)
Q Consensus 125 ~~~~~~i~~ad~~~~s 140 (1171)
+++.+.|.+||+|+.+
T Consensus 74 ~~~~~~l~~ad~I~~~ 89 (250)
T TIGR02069 74 ENAIALLSNATGIFFT 89 (250)
T ss_pred HHHHHHHhhCCEEEEe
Confidence 4566889999999976
No 75
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=21.86 E-value=6.3e+02 Score=30.92 Aligned_cols=69 Identities=17% Similarity=0.165 Sum_probs=40.6
Q ss_pred ChHHHHHHHHHHHCCCcEEEEEecCCC-Cchhhh---HhhccccCCCccceeeeecc-cccccCCCCCCCchhHHHHhhh
Q 001056 336 DSHYVAVIMELEARGAKVIPIFAGGLD-FAGPVE---RFFVDPVMKKPMVNSAISLT-GFALVGGPARQDHPRAIEALRK 410 (1171)
Q Consensus 336 ~~~~daLI~~LE~~G~~vipvf~~gl~-~~~~v~---~~f~~~~~~~~~VDavIn~t-gFsL~ggpa~~~~~~~~~~L~~ 410 (1171)
.++...+++.|++.|..++ +...+. ....++ +.|.. ..+|.||-.+ .| |+ ..-....++.
T Consensus 22 ~~~~~~~~~~l~~~~~~vv--~~~~~~~~~~~~~~~~~~~~~-----~~~d~ii~~~~tf----~~----~~~~~~~~~~ 86 (452)
T cd00578 22 EEYAREVADLLNELPVEVV--DKPEVTGTPDEARKAAEEFNE-----ANCDGLIVWMHTF----GP----AKMWIAGLSE 86 (452)
T ss_pred HHHHHHHHHHHhcCCceEE--ecCcccCCHHHHHHHHHHHhh-----cCCcEEEEccccc----cc----HHHHHHHHHh
Confidence 3456779999998888765 333333 222233 23322 2488887642 33 22 2335567889
Q ss_pred CCCcEEeEe
Q 001056 411 LDVPYIVAL 419 (1171)
Q Consensus 411 LnVPvl~ai 419 (1171)
+++||+...
T Consensus 87 ~~~Pvll~a 95 (452)
T cd00578 87 LRKPVLLLA 95 (452)
T ss_pred cCCCEEEEe
Confidence 999998665
No 76
>PRK10307 putative glycosyl transferase; Provisional
Probab=21.43 E-value=89 Score=37.04 Aligned_cols=36 Identities=19% Similarity=0.258 Sum_probs=29.2
Q ss_pred ceEEEEeecCCCCCCCccccCCCChHHHHHHHHHHHHHCCCCCC
Q 001056 497 KKLAITVFSFPPDKGNIGTAAYLNVFSSIFSVLKDLQRDGYNVE 540 (1171)
Q Consensus 497 KKVAIil~nyPp~~g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~vg 540 (1171)
.||+||-++|+|.-+.+|. .+.++.+.|.+.||+|.
T Consensus 1 mkIlii~~~~~P~~~g~~~--------~~~~l~~~L~~~G~~V~ 36 (412)
T PRK10307 1 MKILVYGINYAPELTGIGK--------YTGEMAEWLAARGHEVR 36 (412)
T ss_pred CeEEEEecCCCCCccchhh--------hHHHHHHHHHHCCCeEE
Confidence 3899999999987654442 57899999999999994
No 77
>PLN02540 methylenetetrahydrofolate reductase
Probab=21.04 E-value=4.4e+02 Score=33.61 Aligned_cols=64 Identities=14% Similarity=0.210 Sum_probs=42.6
Q ss_pred HHHHHhhcCC-ceEEEEEeehhhcc-----------Ch-hhHHHHHHHh-hcCCEEEEeccccHHHHHHHHHHHHHhh
Q 001056 96 VQALNQQVNY-ASYEVVGYLVEELR-----------DV-DTYKTFCKDL-ENANIFIGSLIFVEELALKIKAAVEKER 159 (1171)
Q Consensus 96 ~~~l~~~~~~-~~~~~~~~~~~~~~-----------~~-~~~~~~~~~i-~~ad~~~~sllf~~~~~~~~~~~~~~~~ 159 (1171)
++.+++.++. ..+-|.+|-...-. |+ ..++.+++.+ +.||+||.=|.|+-+....+...+++.-
T Consensus 118 V~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~~~~~~~~~dl~~Lk~KvdAGAdFiITQlfFD~d~f~~f~~~~r~~G 195 (565)
T PLN02540 118 VKHIRSKYGDYFGITVAGYPEAHPDVIGGDGLATPEAYQKDLAYLKEKVDAGADLIITQLFYDTDIFLKFVNDCRQIG 195 (565)
T ss_pred HHHHHHhCCCCceEEEeCCCCCCCcccccccccCCCChHHHHHHHHHHHHcCCCEEeeccccCHHHHHHHHHHHHhcC
Confidence 4556665442 55677666322111 11 3578888888 8999999999999888777777776643
No 78
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=20.97 E-value=3.7e+02 Score=28.33 Aligned_cols=69 Identities=17% Similarity=0.258 Sum_probs=46.3
Q ss_pred EEEEEEcccchhHHHHHHHHHHHhhcCCceEEEEEeehhhccChhhHHHHHHHhhc--CCEEEEeccccHHHHHHH
Q 001056 78 KIVYVVLEAQYQSALSAAVQALNQQVNYASYEVVGYLVEELRDVDTYKTFCKDLEN--ANIFIGSLIFVEELALKI 151 (1171)
Q Consensus 78 ~~v~v~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--ad~~~~sllf~~~~~~~~ 151 (1171)
+|++|++..+-......+...|++ +. +..++. ...-+|.|+.+.++.+.++. +|+||+ .-+++.+..-+
T Consensus 2 ~V~Ii~gs~SD~~~~~~a~~~L~~-~g-i~~~~~--V~saHR~p~~l~~~~~~~~~~~~~viIa-~AG~~a~Lpgv 72 (150)
T PF00731_consen 2 KVAIIMGSTSDLPIAEEAAKTLEE-FG-IPYEVR--VASAHRTPERLLEFVKEYEARGADVIIA-VAGMSAALPGV 72 (150)
T ss_dssp EEEEEESSGGGHHHHHHHHHHHHH-TT--EEEEE--E--TTTSHHHHHHHHHHTTTTTESEEEE-EEESS--HHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHH-cC-CCEEEE--EEeccCCHHHHHHHHHHhccCCCEEEEE-ECCCcccchhh
Confidence 688999988889999999999977 44 555554 44556788888888888754 675554 45566654433
No 79
>PF14044 NETI: NETI protein
Probab=20.15 E-value=63 Score=28.55 Aligned_cols=17 Identities=24% Similarity=0.526 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHCCCCC
Q 001056 523 SSIFSVLKDLQRDGYNV 539 (1171)
Q Consensus 523 ~Sl~~iL~~Lk~~GY~v 539 (1171)
+|+..-|.+|+++||..
T Consensus 8 ETI~~CL~RM~~eGY~P 24 (57)
T PF14044_consen 8 ETISDCLARMKKEGYMP 24 (57)
T ss_pred CcHHHHHHHHHHcCCCc
Confidence 68889999999999975
No 80
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=20.13 E-value=2.3e+02 Score=32.86 Aligned_cols=59 Identities=19% Similarity=0.249 Sum_probs=41.5
Q ss_pred EEEcccchh--HHHHHHHHHHHhhcCCce-EEEEEeehhhccChhhHHHHHHHhhc-CCEEEEeccccHHHH
Q 001056 81 YVVLEAQYQ--SALSAAVQALNQQVNYAS-YEVVGYLVEELRDVDTYKTFCKDLEN-ANIFIGSLIFVEELA 148 (1171)
Q Consensus 81 ~v~~~~~~~--~~~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~-ad~~~~sllf~~~~~ 148 (1171)
++.=|+|.. +.+..|+++.++..|.+. +||.. +.++++.++++. ||||..+=+-.++.-
T Consensus 161 vliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEv---------esle~~~eAl~agaDiImLDNm~~e~~~ 223 (280)
T COG0157 161 VLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEV---------ESLEEAEEALEAGADIIMLDNMSPEELK 223 (280)
T ss_pred EEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEc---------CCHHHHHHHHHcCCCEEEecCCCHHHHH
Confidence 344455543 458899999999887644 77765 556777777765 999999977766643
No 81
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=20.08 E-value=51 Score=35.06 Aligned_cols=77 Identities=19% Similarity=0.269 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCceEEEEEEecccccccChhHHHHHHHhCCeeccCCCCC-------ceeeEEecccccC
Q 001056 1002 SAKVVVDRLIERQKVDNGGKYPETVALVLWGTDNIKTYGESLAQVLWMIGVRPVSDTFGR-------VNRVEPVSLEELG 1074 (1171)
Q Consensus 1002 ~G~~lA~~lL~~y~~e~~G~yPe~va~vLWgtdtmrt~Ge~iAqiL~LlGvrPvwd~~Gr-------V~g~ElIPL~ELg 1074 (1171)
.|+-+.|.+++.- +=-..-+.++|+=-. .=|..+|+.|.-+|++..--+..- ..|+++.+++|.=
T Consensus 5 ~g~S~~d~i~r~t----~~~l~Gk~vvV~GYG----~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~ 76 (162)
T PF00670_consen 5 TGQSLVDGIMRAT----NLMLAGKRVVVIGYG----KVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEAL 76 (162)
T ss_dssp HHHHHHHHHHHHH-----S--TTSEEEEE--S----HHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHT
T ss_pred cchhHHHHHHhcC----ceeeCCCEEEEeCCC----cccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHH
Confidence 3555555555432 223444555555111 127889999999999976533222 3499999999975
Q ss_pred CCceeEEEecCcc
Q 001056 1075 RPRIDVVVNCSGV 1087 (1171)
Q Consensus 1075 RPRIDVvv~iSGi 1087 (1171)
++-|++++.+|-
T Consensus 77 -~~adi~vtaTG~ 88 (162)
T PF00670_consen 77 -RDADIFVTATGN 88 (162)
T ss_dssp -TT-SEEEE-SSS
T ss_pred -hhCCEEEECCCC
Confidence 478999999994
Done!