Query 001056
Match_columns 1171
No_of_seqs 270 out of 826
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 08:47:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001056.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001056hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qk7_A Transcriptional regulat 44.0 66 0.0023 34.2 9.1 86 319-418 6-94 (294)
2 1mio_B Nitrogenase molybdenum 37.5 80 0.0027 36.9 9.1 88 321-417 99-200 (458)
3 3pdi_B Nitrogenase MOFE cofact 37.2 1.1E+02 0.0036 36.0 10.0 92 321-418 95-202 (458)
4 2l2q_A PTS system, cellobiose- 34.6 59 0.002 30.4 5.9 72 74-156 2-73 (109)
5 4hs4_A Chromate reductase; tri 33.1 99 0.0034 31.9 8.0 34 76-109 6-40 (199)
6 3k9c_A Transcriptional regulat 31.7 90 0.0031 33.1 7.7 85 317-418 10-94 (289)
7 2q62_A ARSH; alpha/beta, flavo 29.7 73 0.0025 34.3 6.4 61 75-138 33-103 (247)
8 2fzv_A Putative arsenical resi 28.1 81 0.0028 34.7 6.5 36 75-111 57-95 (279)
9 4h1h_A LMO1638 protein; MCCF-l 26.0 98 0.0033 34.7 6.9 63 319-388 12-86 (327)
10 3m9w_A D-xylose-binding peripl 24.2 1.6E+02 0.0054 31.4 8.0 85 319-418 2-89 (313)
11 2vzf_A NADH-dependent FMN redu 23.6 1.4E+02 0.0048 30.3 7.0 22 77-98 3-27 (197)
12 4etn_A LMPTP, low molecular we 23.3 2E+02 0.0067 29.6 8.0 46 67-112 25-70 (184)
13 3svl_A Protein YIEF; E. coli C 23.3 1.4E+02 0.0048 30.5 7.0 27 75-101 3-29 (193)
14 3u7r_A NADPH-dependent FMN red 23.0 1.8E+02 0.0062 29.9 7.7 23 78-100 4-29 (190)
15 4e5s_A MCCFLIKE protein (BA_56 23.0 1.2E+02 0.0041 34.1 6.9 63 319-388 12-86 (331)
16 4e5v_A Putative THUA-like prot 21.7 1.6E+02 0.0053 32.4 7.3 89 74-170 2-94 (281)
17 3l6u_A ABC-type sugar transpor 21.5 1.6E+02 0.0053 30.9 7.1 87 317-418 6-95 (293)
18 3fij_A LIN1909 protein; 11172J 21.1 1.7E+02 0.006 31.1 7.4 61 319-389 4-70 (254)
19 2xw6_A MGS, methylglyoxal synt 21.1 72 0.0025 31.5 3.9 65 349-419 48-112 (134)
20 3g85_A Transcriptional regulat 21.1 1.3E+02 0.0043 31.6 6.3 89 317-418 9-97 (289)
21 3c48_A Predicted glycosyltrans 21.1 44 0.0015 37.6 2.8 40 496-540 20-63 (438)
22 3fro_A GLGA glycogen synthase; 21.0 48 0.0016 36.9 3.1 36 497-540 3-39 (439)
23 3kts_A Glycerol uptake operon 20.8 1.8E+02 0.006 30.4 7.0 80 333-432 37-119 (192)
24 3lcm_A SMU.1420, putative oxid 20.3 1.7E+02 0.0058 29.8 6.8 35 77-111 1-36 (196)
No 1
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=44.03 E-value=66 Score=34.24 Aligned_cols=86 Identities=15% Similarity=0.120 Sum_probs=50.1
Q ss_pred CCeEEEEeeccccccCC---ChHHHHHHHHHHHCCCcEEEEEecCCCCchhhhHhhccccCCCccceeeeecccccccCC
Q 001056 319 APVIGLILQRSHIVTGD---DSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISLTGFALVGG 395 (1171)
Q Consensus 319 ~p~Vgil~yrs~~~~g~---~~~~daLI~~LE~~G~~vipvf~~gl~~~~~v~~~f~~~~~~~~~VDavIn~tgFsL~gg 395 (1171)
..+||+++........| ...+.++-++++++|+.++-......+....+.+.+.. ..||+||-....
T Consensus 6 s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~-----~~vdGiIi~~~~----- 75 (294)
T 3qk7_A 6 TDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVET-----RRVDALIVAHTQ----- 75 (294)
T ss_dssp CCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHH-----TCCSEEEECSCC-----
T ss_pred cceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHc-----CCCCEEEEeCCC-----
Confidence 46899998632100111 24556777888899999986665431111222233332 248998865321
Q ss_pred CCCCCchhHHHHhhhCCCcEEeE
Q 001056 396 PARQDHPRAIEALRKLDVPYIVA 418 (1171)
Q Consensus 396 pa~~~~~~~~~~L~~LnVPvl~a 418 (1171)
. .....+.+++.++||+..
T Consensus 76 ---~-~~~~~~~l~~~~iPvV~~ 94 (294)
T 3qk7_A 76 ---P-EDFRLQYLQKQNFPFLAL 94 (294)
T ss_dssp ---S-SCHHHHHHHHTTCCEEEE
T ss_pred ---C-ChHHHHHHHhCCCCEEEE
Confidence 1 124567788999998843
No 2
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=37.52 E-value=80 Score=36.93 Aligned_cols=88 Identities=17% Similarity=0.188 Sum_probs=50.3
Q ss_pred eEEEEeeccccccCCChHHHHHHHHHHHC-----CCcEEEEEecCCCCch------h---hhHhhccccCCCccceeeee
Q 001056 321 VIGLILQRSHIVTGDDSHYVAVIMELEAR-----GAKVIPIFAGGLDFAG------P---VERFFVDPVMKKPMVNSAIS 386 (1171)
Q Consensus 321 ~Vgil~yrs~~~~g~~~~~daLI~~LE~~-----G~~vipvf~~gl~~~~------~---v~~~f~~~~~~~~~VDavIn 386 (1171)
.|+|+.--..-+-|+ .+++++++++++ |..|+|+-+.|+..+. + +-++|..+. .+ -.--||
T Consensus 99 ~I~V~tTC~~e~IGd--Di~~v~~~~~~~~~~~~~~pvi~v~tpgf~gs~~~G~~~a~~al~~~l~~~~-~~--~~~~VN 173 (458)
T 1mio_B 99 IIAVHTTCLSETLGD--DLPTYISQMEDAGSIPEGKLVIHTNTPSYVGSHVTGFANMVQGIVNYLSENT-GA--KNGKIN 173 (458)
T ss_dssp EEEEEECHHHHHHTC--CHHHHHHHHHHTTCSCTTCEEEEECCCTTSSCHHHHHHHHHHHHHHHHCCCC-SC--CCSCEE
T ss_pred EEEEECCcHHHHHhc--CHHHHHHHHHHhcCCCCCCeEEEEECCCCcccHHHHHHHHHHHHHHHHcccc-CC--CCCcEE
Confidence 455554332222332 378899999998 7999999998876321 1 223344311 11 112356
Q ss_pred cccccccCCCCCCCchhHHHHhhhCCCcEEe
Q 001056 387 LTGFALVGGPARQDHPRAIEALRKLDVPYIV 417 (1171)
Q Consensus 387 ~tgFsL~ggpa~~~~~~~~~~L~~LnVPvl~ 417 (1171)
..|.... ..|..+-..+|+++|+.|..
T Consensus 174 ilg~~~~----~~d~~eik~lL~~~Gi~v~~ 200 (458)
T 1mio_B 174 VIPGFVG----PADMREIKRLFEAMDIPYIM 200 (458)
T ss_dssp EECCSCC----HHHHHHHHHHHHHHTCCEEE
T ss_pred EECCCCC----HHHHHHHHHHHHHcCCcEEE
Confidence 5432221 12334556899999999975
No 3
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=37.18 E-value=1.1e+02 Score=36.02 Aligned_cols=92 Identities=13% Similarity=0.171 Sum_probs=53.5
Q ss_pred eEEEEeeccccccCCChHHHHHHHHHHHC-----CCcEEEEEecCCCCc------hhh---hHhhccc-cCCCccceeee
Q 001056 321 VIGLILQRSHIVTGDDSHYVAVIMELEAR-----GAKVIPIFAGGLDFA------GPV---ERFFVDP-VMKKPMVNSAI 385 (1171)
Q Consensus 321 ~Vgil~yrs~~~~g~~~~~daLI~~LE~~-----G~~vipvf~~gl~~~------~~v---~~~f~~~-~~~~~~VDavI 385 (1171)
.|+|+.--..-+-| ..+++++++++++ |+.|+||-+.|+... .++ -++|... ......-.--|
T Consensus 95 ~I~V~tTC~~e~IG--dDi~~v~~~~~~~~~~~~~~pVi~v~tpgf~gs~~~G~~~a~~al~~~l~~~~~~~~~~~~~~V 172 (458)
T 3pdi_B 95 VIGLLTTGLSETQG--CDLHTALHEFRTQYEEYKDVPIVPVNTPDFSGCFESGFAAAVKAIVETLVPERRDQVGKRPRQV 172 (458)
T ss_dssp EEEEEECHHHHTTC--TTHHHHHHHTTTSCCSCSCSCEEEECCCTTSSCHHHHHHHHHHHHHHHSSCSSSCTTCCCSSEE
T ss_pred EEEEECCcHHHHhc--CCHHHHHHHHHHhccccCCCeEEEeeCCCcCCchhHHHHHHHHHHHHHhhccccCcCCCCCCeE
Confidence 56655433332223 3578899999997 899999988887632 122 2344431 00111122346
Q ss_pred ecc-cccccCCCCCCCchhHHHHhhhCCCcEEeE
Q 001056 386 SLT-GFALVGGPARQDHPRAIEALRKLDVPYIVA 418 (1171)
Q Consensus 386 n~t-gFsL~ggpa~~~~~~~~~~L~~LnVPvl~a 418 (1171)
|+. |+.+.. .|..+-..+|+++++.|...
T Consensus 173 Nii~G~~~~~----~D~~eik~lL~~~Gi~v~~~ 202 (458)
T 3pdi_B 173 NVLCSANLTP----GDLEYIAESIESFGLRPLLI 202 (458)
T ss_dssp EEEECTTCCH----HHHHHHHHHHHTTTCEEEEE
T ss_pred EEEeCCCCCh----HHHHHHHHHHHHcCCEEEEe
Confidence 765 764322 23445568999999998853
No 4
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=34.60 E-value=59 Score=30.40 Aligned_cols=72 Identities=8% Similarity=0.060 Sum_probs=39.7
Q ss_pred CCcEEEEEEEcccchhHHHHHHHHHHHhhcCCceEEEEEeehhhccChhhHHHHHHHhhcCCEEEEeccccHHHHHHHHH
Q 001056 74 LPTVKIVYVVLEAQYQSALSAAVQALNQQVNYASYEVVGYLVEELRDVDTYKTFCKDLENANIFIGSLIFVEELALKIKA 153 (1171)
Q Consensus 74 ~~~~~~v~v~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ad~~~~sllf~~~~~~~~~~ 153 (1171)
++.|||++++..+--.|.+....+..-.+.. +++++.++...++ ...+.++|+||.+--..+. .+.+..
T Consensus 2 ~~~mkIlvvC~~G~~TSll~~kl~~~~~~~g-i~~~i~~~~~~~~---------~~~~~~~D~Ii~t~~l~~~-~~~~~~ 70 (109)
T 2l2q_A 2 PGSMNILLVCGAGMSTSMLVQRIEKYAKSKN-INATIEAIAETRL---------SEVVDRFDVVLLAPQSRFN-KKRLEE 70 (109)
T ss_dssp CCCEEEEEESSSSCSSCHHHHHHHHHHHHHT-CSEEEEEECSTTH---------HHHTTTCSEEEECSCCSSH-HHHHHH
T ss_pred CCceEEEEECCChHhHHHHHHHHHHHHHHCC-CCeEEEEecHHHH---------HhhcCCCCEEEECCccHHH-HHHHHH
Confidence 4559977777665555544444443333322 5566665444432 2336789999998765433 344444
Q ss_pred HHH
Q 001056 154 AVE 156 (1171)
Q Consensus 154 ~~~ 156 (1171)
.+.
T Consensus 71 ~~~ 73 (109)
T 2l2q_A 71 ITK 73 (109)
T ss_dssp HHH
T ss_pred Hhc
Confidence 433
No 5
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=33.10 E-value=99 Score=31.93 Aligned_cols=34 Identities=15% Similarity=0.046 Sum_probs=19.1
Q ss_pred cEEEEEEEcccchhHHHHHHHHHHHhhcC-CceEE
Q 001056 76 TVKIVYVVLEAQYQSALSAAVQALNQQVN-YASYE 109 (1171)
Q Consensus 76 ~~~~v~v~~~~~~~~~~~~a~~~l~~~~~-~~~~~ 109 (1171)
+|||++|.+.+.-.+.-.+.++.+.+..+ +.+++
T Consensus 6 ~mkIl~I~GS~r~~s~t~~la~~~~~~~~~g~~v~ 40 (199)
T 4hs4_A 6 PLHFVTLLGSLRKASFNAAVARALPEIAPEGIAIT 40 (199)
T ss_dssp CEEEEEEECCCSTTCHHHHHHHHHHHHCCTTEEEE
T ss_pred CCEEEEEEcCCCCCChHHHHHHHHHHHccCCCEEE
Confidence 58999999876544444444444444332 33444
No 6
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=31.67 E-value=90 Score=33.06 Aligned_cols=85 Identities=15% Similarity=0.129 Sum_probs=44.9
Q ss_pred CCCCeEEEEeeccccccCCChHHHHHHHHHHHCCCcEEEEEecCCCCchhhhHhhccccCCCccceeeeecccccccCCC
Q 001056 317 PDAPVIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISLTGFALVGGP 396 (1171)
Q Consensus 317 ~~~p~Vgil~yrs~~~~g~~~~~daLI~~LE~~G~~vipvf~~gl~~~~~v~~~f~~~~~~~~~VDavIn~tgFsL~ggp 396 (1171)
....+||+++ . .-..--...+..+-++++++|+.++-..... +.. ..+.+.. . -...||+||-....
T Consensus 10 ~~~~~Igvi~-~-~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~--~~~~~~~-l-~~~~vdgiIi~~~~------ 76 (289)
T 3k9c_A 10 ASSRLLGVVF-E-LQQPFHGDLVEQIYAAATRRGYDVMLSAVAP-SRA--EKVAVQA-L-MRERCEAAILLGTR------ 76 (289)
T ss_dssp ---CEEEEEE-E-TTCHHHHHHHHHHHHHHHHTTCEEEEEEEBT-TBC--HHHHHHH-H-TTTTEEEEEEETCC------
T ss_pred CCCCEEEEEE-e-cCCchHHHHHHHHHHHHHHCCCEEEEEeCCC-CHH--HHHHHHH-H-HhCCCCEEEEECCC------
Confidence 3456999998 2 1100012345667778888999988655433 211 1122211 1 12358999875321
Q ss_pred CCCCchhHHHHhhhCCCcEEeE
Q 001056 397 ARQDHPRAIEALRKLDVPYIVA 418 (1171)
Q Consensus 397 a~~~~~~~~~~L~~LnVPvl~a 418 (1171)
. .....+.+++ ++||+..
T Consensus 77 --~-~~~~~~~~~~-~iPvV~i 94 (289)
T 3k9c_A 77 --F-DTDELGALAD-RVPALVV 94 (289)
T ss_dssp --C-CHHHHHHHHT-TSCEEEE
T ss_pred --C-CHHHHHHHHc-CCCEEEE
Confidence 1 1244556667 9998843
No 7
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=29.66 E-value=73 Score=34.25 Aligned_cols=61 Identities=11% Similarity=-0.025 Sum_probs=30.8
Q ss_pred CcEEEEEEEcccc---hhHHHHHHHHHHHhhcCCceEEEEEeehhhcc-------ChhhHHHHHHHhhcCCEEE
Q 001056 75 PTVKIVYVVLEAQ---YQSALSAAVQALNQQVNYASYEVVGYLVEELR-------DVDTYKTFCKDLENANIFI 138 (1171)
Q Consensus 75 ~~~~~v~v~~~~~---~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~i~~ad~~~ 138 (1171)
+.|||++|.+.+. +...+.+++....++ ++.++++. ....+. .++...++.+.|..||.||
T Consensus 33 ~~mkIliI~GS~r~~s~t~~La~~~~~~l~~-~g~eve~i--dL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI 103 (247)
T 2q62_A 33 HRPRILILYGSLRTVSYSRLLAEEARRLLEF-FGAEVKVF--DPSGLPLPDAAPVSHPKVQELRELSIWSEGQV 103 (247)
T ss_dssp SCCEEEEEECCCCSSCHHHHHHHHHHHHHHH-TTCEEEEC--CCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEE
T ss_pred CCCeEEEEEccCCCCCHHHHHHHHHHHHHhh-CCCEEEEE--EhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEE
Confidence 4579999998764 444444443332232 34555543 222221 1233555556666666443
No 8
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=28.11 E-value=81 Score=34.74 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=20.7
Q ss_pred CcEEEEEEEcccc---hhHHHHHHHHHHHhhcCCceEEEE
Q 001056 75 PTVKIVYVVLEAQ---YQSALSAAVQALNQQVNYASYEVV 111 (1171)
Q Consensus 75 ~~~~~v~v~~~~~---~~~~~~~a~~~l~~~~~~~~~~~~ 111 (1171)
..|||++|.+... +...+.+++....++ .+.++++.
T Consensus 57 ~~mKILiI~GS~R~~S~T~~La~~~~~~l~~-~G~eveii 95 (279)
T 2fzv_A 57 PPVRILLLYGSLRARSFSRLAVEEAARLLQF-FGAETRIF 95 (279)
T ss_dssp SCCEEEEEESCCSSSCHHHHHHHHHHHHHHH-TTCEEEEB
T ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHHHhh-CCCEEEEE
Confidence 4689999998764 454554444333332 34555543
No 9
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=26.00 E-value=98 Score=34.66 Aligned_cols=63 Identities=19% Similarity=0.210 Sum_probs=41.4
Q ss_pred CCeEEEEeeccccccCCChHHHHHHHHHHHCCCcEEEEEecCC-------CCch-----hhhHhhccccCCCccceeeee
Q 001056 319 APVIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGL-------DFAG-----PVERFFVDPVMKKPMVNSAIS 386 (1171)
Q Consensus 319 ~p~Vgil~yrs~~~~g~~~~~daLI~~LE~~G~~vipvf~~gl-------~~~~-----~v~~~f~~~~~~~~~VDavIn 386 (1171)
.-+|||+.-.+.+-.-+...++.-++.||+.|++|+ +...+ ..++ .+.++|.| +.||+|+.
T Consensus 12 GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~--~~~~~~~~~~~~agtd~~Ra~dL~~a~~D-----p~i~aI~~ 84 (327)
T 4h1h_A 12 GDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVT--FGEHVAEMDCMMSSSIRSRVADIHEAFND-----SSVKAILT 84 (327)
T ss_dssp TCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEE--ECTTTTCCCTTSSCCHHHHHHHHHHHHHC-----TTEEEEEE
T ss_pred CCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEE--ECcchhhccCcccCCHHHHHHHHHHHhhC-----CCCCEEEE
Confidence 349999987665533344568888999999999986 33221 1111 23456665 45999988
Q ss_pred cc
Q 001056 387 LT 388 (1171)
Q Consensus 387 ~t 388 (1171)
.-
T Consensus 85 ~r 86 (327)
T 4h1h_A 85 VI 86 (327)
T ss_dssp SC
T ss_pred cC
Confidence 64
No 10
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=24.17 E-value=1.6e+02 Score=31.43 Aligned_cols=85 Identities=13% Similarity=0.087 Sum_probs=49.2
Q ss_pred CCeEEEEeeccccccCCChHHHHHHHHHHHCCCcEEEEEecCCCCc---hhhhHhhccccCCCccceeeeecccccccCC
Q 001056 319 APVIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFA---GPVERFFVDPVMKKPMVNSAISLTGFALVGG 395 (1171)
Q Consensus 319 ~p~Vgil~yrs~~~~g~~~~~daLI~~LE~~G~~vipvf~~gl~~~---~~v~~~f~~~~~~~~~VDavIn~tgFsL~gg 395 (1171)
+.+||+++.... ..--...+..+-+++++.|+.++-... ..+.. ..++.+.. ..+|+||-....
T Consensus 2 ~~~Igvi~~~~~-~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~i~~l~~------~~vdgiIi~~~~----- 68 (313)
T 3m9w_A 2 EVKIGMAIDDLR-LERWQKDRDIFVKKAESLGAKVFVQSA-NGNEETQMSQIENMIN------RGVDVLVIIPYN----- 68 (313)
T ss_dssp -CEEEEEESCCS-SSTTHHHHHHHHHHHHHTSCEEEEEEC-TTCHHHHHHHHHHHHH------TTCSEEEEECSS-----
T ss_pred CcEEEEEeCCCC-ChHHHHHHHHHHHHHHHcCCEEEEECC-CCCHHHHHHHHHHHHH------cCCCEEEEeCCC-----
Confidence 358999986421 111235778889999999999885433 22211 11222221 248998864321
Q ss_pred CCCCCchhHHHHhhhCCCcEEeE
Q 001056 396 PARQDHPRAIEALRKLDVPYIVA 418 (1171)
Q Consensus 396 pa~~~~~~~~~~L~~LnVPvl~a 418 (1171)
........+.+.+.++||+..
T Consensus 69 --~~~~~~~~~~~~~~~iPvV~~ 89 (313)
T 3m9w_A 69 --GQVLSNVVKEAKQEGIKVLAY 89 (313)
T ss_dssp --TTSCHHHHHHHHTTTCEEEEE
T ss_pred --hhhhHHHHHHHHHCCCeEEEE
Confidence 111234567788899999854
No 11
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=23.60 E-value=1.4e+02 Score=30.27 Aligned_cols=22 Identities=18% Similarity=0.081 Sum_probs=13.7
Q ss_pred EEEEEEEccc---chhHHHHHHHHH
Q 001056 77 VKIVYVVLEA---QYQSALSAAVQA 98 (1171)
Q Consensus 77 ~~~v~v~~~~---~~~~~~~~a~~~ 98 (1171)
|||++|.... ++...+.+++..
T Consensus 3 mkilii~gS~r~~g~t~~la~~i~~ 27 (197)
T 2vzf_A 3 YSIVAISGSPSRNSTTAKLAEYALA 27 (197)
T ss_dssp EEEEEEECCSSTTCHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCChHHHHHHHHHH
Confidence 5888888875 455555554433
No 12
>4etn_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.10A {Bacillus subtilis} PDB: 4eti_A 1zgg_A
Probab=23.34 E-value=2e+02 Score=29.65 Aligned_cols=46 Identities=11% Similarity=0.076 Sum_probs=26.3
Q ss_pred ccCCCCCCCcEEEEEEEcccchhHHHHHHHHHHHhhcCCceEEEEE
Q 001056 67 VPENRDNLPTVKIVYVVLEAQYQSALSAAVQALNQQVNYASYEVVG 112 (1171)
Q Consensus 67 ~~~~~~~~~~~~~v~v~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~ 112 (1171)
.|...-+..++||+||++.+...|.+.+|+-+-.....++.+++.+
T Consensus 25 ~~~~~m~~~~~~VLFVC~gNiCRSpmAEai~r~~~~~~g~~~~v~S 70 (184)
T 4etn_A 25 TGGQQMGRGSMDIIFVCTGNTSRSPMAEALFKSIAEREGLNVNVRS 70 (184)
T ss_dssp ---------CEEEEEEESSSSSHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCccccCCCCCEEEEECCCchhHHHHHHHHHHHHHHhcCCcEEEEe
Confidence 3444455566899999999999999988876332222224566644
No 13
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=23.31 E-value=1.4e+02 Score=30.54 Aligned_cols=27 Identities=11% Similarity=0.096 Sum_probs=17.3
Q ss_pred CcEEEEEEEcccchhHHHHHHHHHHHh
Q 001056 75 PTVKIVYVVLEAQYQSALSAAVQALNQ 101 (1171)
Q Consensus 75 ~~~~~v~v~~~~~~~~~~~~a~~~l~~ 101 (1171)
.+|||++|.+.+.-.+...+.++.+.+
T Consensus 3 ~~mkil~I~GS~r~~s~t~~l~~~~~~ 29 (193)
T 3svl_A 3 EKLQVVTLLGSLRKGSFNGMVARTLPK 29 (193)
T ss_dssp -CEEEEEEECCCSTTCHHHHHHHHGGG
T ss_pred CCCEEEEEEccCCCCCHHHHHHHHHHH
Confidence 358999999987765554444444444
No 14
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=23.04 E-value=1.8e+02 Score=29.89 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=12.5
Q ss_pred EEEEEEcccc---hhHHHHHHHHHHH
Q 001056 78 KIVYVVLEAQ---YQSALSAAVQALN 100 (1171)
Q Consensus 78 ~~v~v~~~~~---~~~~~~~a~~~l~ 100 (1171)
+|++|++... ++..+.+++..+.
T Consensus 4 ~I~vi~GS~R~~S~~~~la~~~~~~~ 29 (190)
T 3u7r_A 4 TVAVMVGSLRKDSLNHKLMKVLQKLA 29 (190)
T ss_dssp EEEEEESCCSTTCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhc
Confidence 5777777543 4444545444443
No 15
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=22.97 E-value=1.2e+02 Score=34.06 Aligned_cols=63 Identities=16% Similarity=0.173 Sum_probs=42.4
Q ss_pred CCeEEEEeeccccccCCChHHHHHHHHHHHCCCcEEEEEecCC-C------Cch-----hhhHhhccccCCCccceeeee
Q 001056 319 APVIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGL-D------FAG-----PVERFFVDPVMKKPMVNSAIS 386 (1171)
Q Consensus 319 ~p~Vgil~yrs~~~~g~~~~~daLI~~LE~~G~~vipvf~~gl-~------~~~-----~v~~~f~~~~~~~~~VDavIn 386 (1171)
.-+|||+.-.+....-+..-++..++.||+.|++|+ +.... + .++ .+.++|.| +.||+|+.
T Consensus 12 GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~--~~~~~~~~~~~~ag~d~~Ra~dL~~a~~D-----p~i~aI~~ 84 (331)
T 4e5s_A 12 GDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVT--FSTHAEEIDRFASSSISSRVQDLHEAFRD-----PNVKAILT 84 (331)
T ss_dssp TCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEE--ECTTTTCCCTTSSCCHHHHHHHHHHHHHC-----TTEEEEEE
T ss_pred cCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEE--ECCchhcccCccCCCHHHHHHHHHHHhhC-----CCCCEEEE
Confidence 458999988776653345678889999999999987 32211 1 111 23456665 45899988
Q ss_pred cc
Q 001056 387 LT 388 (1171)
Q Consensus 387 ~t 388 (1171)
+.
T Consensus 85 ~r 86 (331)
T 4e5s_A 85 TL 86 (331)
T ss_dssp SC
T ss_pred cc
Confidence 65
No 16
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=21.70 E-value=1.6e+02 Score=32.36 Aligned_cols=89 Identities=11% Similarity=0.100 Sum_probs=50.5
Q ss_pred CCcEEEEEEEcccch-hHHHHHHHHHHHhhcCCceEEEEEeehhhccChhhHHHHHHHhhcCCEEEEeccc---cHHHHH
Q 001056 74 LPTVKIVYVVLEAQY-QSALSAAVQALNQQVNYASYEVVGYLVEELRDVDTYKTFCKDLENANIFIGSLIF---VEELAL 149 (1171)
Q Consensus 74 ~~~~~~v~v~~~~~~-~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ad~~~~sllf---~~~~~~ 149 (1171)
..++||++|+..... ......+++.+.++..+.++++.. ...+..|++. |.+.+++.|+||.+.-+ .+++.+
T Consensus 2 ~~~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~-d~~~~~d~~~---f~~~L~~~D~vV~~~~~~~l~~~~~~ 77 (281)
T 4e5v_A 2 RKPIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVI-SPEQGKDMSG---FVLDFSPYQLVVLDYNGDSWPEETNR 77 (281)
T ss_dssp CCCEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEE-CCCTTSCCTT---CCCCCTTCSEEEECCCSSCCCHHHHH
T ss_pred CCceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEe-CCccccchhH---HhhhhhcCCEEEEeCCCCcCCHHHHH
Confidence 467899999886544 344445555555555545555542 2112223332 33578999999976642 456666
Q ss_pred HHHHHHHHhhcccCEEEeccC
Q 001056 150 KIKAAVEKERDRLDAVLVFPS 170 (1171)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~s 170 (1171)
++...|+. --.++++-+
T Consensus 78 ~l~~yV~~----Ggglv~~H~ 94 (281)
T 4e5v_A 78 RFLEYVQN----GGGVVIYHA 94 (281)
T ss_dssp HHHHHHHT----TCEEEEEGG
T ss_pred HHHHHHHc----CCCEEEEec
Confidence 66666653 234555444
No 17
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=21.49 E-value=1.6e+02 Score=30.94 Aligned_cols=87 Identities=15% Similarity=0.090 Sum_probs=47.1
Q ss_pred CCCCeEEEEeeccccccCCChHHHHHHHHHHHCCCcEEEEEecCCCCc---hhhhHhhccccCCCccceeeeeccccccc
Q 001056 317 PDAPVIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFA---GPVERFFVDPVMKKPMVNSAISLTGFALV 393 (1171)
Q Consensus 317 ~~~p~Vgil~yrs~~~~g~~~~~daLI~~LE~~G~~vipvf~~gl~~~---~~v~~~f~~~~~~~~~VDavIn~tgFsL~ 393 (1171)
....+||+++....- .-....+.++-+++++.|+.++-.... -+.. ..++.+. . ..+|+||-....
T Consensus 6 ~~~~~Ig~i~~~~~~-~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~-~-----~~vdgiI~~~~~--- 74 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKH-EFAQRLINAFKAEAKANKYEALVATSQ-NSRISEREQILEFV-H-----LKVDAIFITTLD--- 74 (293)
T ss_dssp ---CEEEEEESCSCS-HHHHHHHHHHHHHHHHTTCEEEEEECS-SCHHHHHHHHHHHH-H-----TTCSEEEEECSC---
T ss_pred CCCcEEEEEEecCCc-HHHHHHHHHHHHHHHHcCCEEEEECCC-CCHHHHHHHHHHHH-H-----cCCCEEEEecCC---
Confidence 345799999864210 001244566778888999998854432 2211 1122222 1 248998864321
Q ss_pred CCCCCCCchhHHHHhhhCCCcEEeE
Q 001056 394 GGPARQDHPRAIEALRKLDVPYIVA 418 (1171)
Q Consensus 394 ggpa~~~~~~~~~~L~~LnVPvl~a 418 (1171)
........+.+.+.++||+..
T Consensus 75 ----~~~~~~~~~~~~~~~iPvV~~ 95 (293)
T 3l6u_A 75 ----DVYIGSAIEEAKKAGIPVFAI 95 (293)
T ss_dssp ----TTTTHHHHHHHHHTTCCEEEE
T ss_pred ----hHHHHHHHHHHHHcCCCEEEe
Confidence 111224566788889998854
No 18
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=21.11 E-value=1.7e+02 Score=31.11 Aligned_cols=61 Identities=18% Similarity=0.139 Sum_probs=31.5
Q ss_pred CCeEEEEeecccccc----C--CChHHHHHHHHHHHCCCcEEEEEecCCCCchhhhHhhccccCCCccceeeeeccc
Q 001056 319 APVIGLILQRSHIVT----G--DDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISLTG 389 (1171)
Q Consensus 319 ~p~Vgil~yrs~~~~----g--~~~~~daLI~~LE~~G~~vipvf~~gl~~~~~v~~~f~~~~~~~~~VDavIn~tg 389 (1171)
+|.|||......--. + -.-.....+++|++.|..++.+-. ..... +.+++. .+|.||-+-|
T Consensus 4 ~p~IGi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~pv~lp~--~~~~~-~~~~l~-------~~DGlil~GG 70 (254)
T 3fij_A 4 KPVIGITGNRLVKGVDVFYGHRVTYTQQRYVDAIQKVGGFPIALPI--DDPST-AVQAIS-------LVDGLLLTGG 70 (254)
T ss_dssp CCEEEEEC------------------CHHHHHHHHHHTCEEEEECC--CCGGG-HHHHHH-------TCSEEEECCC
T ss_pred CCEEEEeCCcccccccccCCcchhhhhHHHHHHHHHCCCEEEEEeC--CCchH-HHHHHh-------hCCEEEECCC
Confidence 689999876322111 0 112235688999999998875421 11112 444443 2788876544
No 19
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=21.10 E-value=72 Score=31.48 Aligned_cols=65 Identities=15% Similarity=0.168 Sum_probs=34.8
Q ss_pred CCCcEEEEEecCCCCchhhhHhhccccCCCccceeeeecccccccCCCCCCCchhHHHHhhhCCCcEEeEe
Q 001056 349 RGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISLTGFALVGGPARQDHPRAIEALRKLDVPYIVAL 419 (1171)
Q Consensus 349 ~G~~vipvf~~gl~~~~~v~~~f~~~~~~~~~VDavIn~tgFsL~ggpa~~~~~~~~~~L~~LnVPvl~ai 419 (1171)
.|+.|-.|....+..++-+-+...+ | .||.|||+.. +|...|...|...-...=-..||||+..+
T Consensus 48 ~Gl~v~~v~k~~~eG~p~I~d~I~~---g--eIdlVInt~~-pl~~~~h~~D~~~IrR~A~~~~IP~~T~l 112 (134)
T 2xw6_A 48 TGLTVEKLLSGPLGGDQQMGARVAE---G--RILAVIFFRD-PLTAQPHEPDVQALLRVCDVHGVPLATNP 112 (134)
T ss_dssp HCCCCEECSCGGGTHHHHHHHHHHT---T--CEEEEEEECC-TTTCCTTSCCSHHHHHHHHHHTCCEECSH
T ss_pred hCceEEEEEecCCCCcchHHHHHHC---C--CccEEEEccC-cccCCCccchHHHHHHHHHHcCCCeEcCH
Confidence 5666555443222333334444432 3 4899999863 33333323444433344457899999655
No 20
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=21.08 E-value=1.3e+02 Score=31.64 Aligned_cols=89 Identities=12% Similarity=-0.028 Sum_probs=45.9
Q ss_pred CCCCeEEEEeeccccccCCChHHHHHHHHHHHCCCcEEEEEecCCCCchhhhHhhccccCCCccceeeeecccccccCCC
Q 001056 317 PDAPVIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISLTGFALVGGP 396 (1171)
Q Consensus 317 ~~~p~Vgil~yrs~~~~g~~~~~daLI~~LE~~G~~vipvf~~gl~~~~~v~~~f~~~~~~~~~VDavIn~tgFsL~ggp 396 (1171)
....+|||++....-..--...+..+-+++++.|+.++-..... +... ..+++.. -....||+||-....
T Consensus 9 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~-~~~~~~~--l~~~~vdgiIi~~~~------ 78 (289)
T 3g85_A 9 QSKPTIALYWSSDISVNIISRFLRGLQSKLAKQNYNYNVVICPY-KTDC-LHLEKGI--SKENSFDAAIIANIS------ 78 (289)
T ss_dssp --CCEEEEEEETTSCGGGHHHHHHHHHHHHHHTTTCSEEEEEEE-CTTC-GGGCGGG--STTTCCSEEEESSCC------
T ss_pred CCCceEEEEeccccchHHHHHHHHHHHHHHHHcCCeEEEEecCC-Cchh-HHHHHHH--HhccCCCEEEEecCC------
Confidence 44579999987311111113567778888999999988554432 1111 1122211 112358999864321
Q ss_pred CCCCchhHHHHhhhCCCcEEeE
Q 001056 397 ARQDHPRAIEALRKLDVPYIVA 418 (1171)
Q Consensus 397 a~~~~~~~~~~L~~LnVPvl~a 418 (1171)
........+.+.++||+..
T Consensus 79 ---~~~~~~~~~~~~~iPvV~~ 97 (289)
T 3g85_A 79 ---NYDLEYLNKASLTLPIILF 97 (289)
T ss_dssp ---HHHHHHHHHCCCSSCEEEE
T ss_pred ---cccHHHHHhccCCCCEEEE
Confidence 0111222234678998843
No 21
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=21.06 E-value=44 Score=37.57 Aligned_cols=40 Identities=23% Similarity=0.429 Sum_probs=28.4
Q ss_pred CceEEEEeecCCCCC----CCccccCCCChHHHHHHHHHHHHHCCCCCC
Q 001056 496 EKKLAITVFSFPPDK----GNIGTAAYLNVFSSIFSVLKDLQRDGYNVE 540 (1171)
Q Consensus 496 eKKVAIil~nyPp~~----g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~vg 540 (1171)
-+||+||.++|||-. +..| | +-..+.++.+.|++.||+|.
T Consensus 20 mmkIl~i~~~~~p~~~~~~~~~G-G----~~~~~~~la~~L~~~G~~V~ 63 (438)
T 3c48_A 20 HMRVAMISMHTSPLQQPGTGDSG-G----MNVYILSTATELAKQGIEVD 63 (438)
T ss_dssp CCEEEEECTTSCTTCC--------C----HHHHHHHHHHHHHHTTCEEE
T ss_pred hheeeeEEeeccccccCCCCCCC-C----HHHHHHHHHHHHHhcCCEEE
Confidence 369999999998842 2333 1 22467899999999999994
No 22
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=21.02 E-value=48 Score=36.87 Aligned_cols=36 Identities=22% Similarity=0.368 Sum_probs=28.4
Q ss_pred ceEEEEeecCCC-CCCCccccCCCChHHHHHHHHHHHHHCCCCCC
Q 001056 497 KKLAITVFSFPP-DKGNIGTAAYLNVFSSIFSVLKDLQRDGYNVE 540 (1171)
Q Consensus 497 KKVAIil~nyPp-~~g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~vg 540 (1171)
-||.+|.+.||| ..|.++ ..+.++.+.|++.||+|.
T Consensus 3 MkIl~v~~~~~p~~~gG~~--------~~~~~la~~L~~~G~~V~ 39 (439)
T 3fro_A 3 MKVLLLGFEFLPVKVGGLA--------EALTAISEALASLGHEVL 39 (439)
T ss_dssp CEEEEECSCCTTSCSSSHH--------HHHHHHHHHHHHTTCEEE
T ss_pred eEEEEEecccCCcccCCHH--------HHHHHHHHHHHHCCCeEE
Confidence 389999999998 333333 368899999999999994
No 23
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=20.84 E-value=1.8e+02 Score=30.41 Aligned_cols=80 Identities=19% Similarity=0.188 Sum_probs=56.1
Q ss_pred cCCChHHHHHHHHHHHCCCcEEEEEe---cCCCCchhhhHhhccccCCCccceeeeecccccccCCCCCCCchhHHHHhh
Q 001056 333 TGDDSHYVAVIMELEARGAKVIPIFA---GGLDFAGPVERFFVDPVMKKPMVNSAISLTGFALVGGPARQDHPRAIEALR 409 (1171)
Q Consensus 333 ~g~~~~~daLI~~LE~~G~~vipvf~---~gl~~~~~v~~~f~~~~~~~~~VDavIn~tgFsL~ggpa~~~~~~~~~~L~ 409 (1171)
.|+...++.+++.+.++|-.|+ ||. .|+.....--+|+.+ ...+|.||++- ...+...+
T Consensus 37 ~g~i~~l~~~v~~lk~~~K~v~-Vh~Dli~Gls~d~~ai~fL~~----~~~pdGIIsTk-------------~~~i~~Ak 98 (192)
T 3kts_A 37 ETHVAQLKALVKYAQAGGKKVL-LHADLVNGLKNDDYAIDFLCT----EICPDGIISTR-------------GNAIMKAK 98 (192)
T ss_dssp SEETTTHHHHHHHHHHTTCEEE-EEGGGEETCCCSHHHHHHHHH----TTCCSEEEESC-------------HHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHcCCeEE-EecCchhccCCcHHHHHHHHh----CCCCCEEEeCc-------------HHHHHHHH
Confidence 4567789999999999997655 565 455433332345543 23589999974 34567889
Q ss_pred hCCCcEEeEecCCCCCHHHHhcC
Q 001056 410 KLDVPYIVALPLVFQTTEEWLNS 432 (1171)
Q Consensus 410 ~LnVPvl~ai~l~~qt~eeW~~s 432 (1171)
++|+..+|-+.+ -+...|+.+
T Consensus 99 ~~gL~tIqR~Fl--iDS~al~~~ 119 (192)
T 3kts_A 99 QHKMLAIQRLFM--IDSSAYNKG 119 (192)
T ss_dssp HTTCEEEEEEEC--CSHHHHHHH
T ss_pred HCCCeEEEEEEE--EEcchHHHH
Confidence 999999999865 467777764
No 24
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=20.28 E-value=1.7e+02 Score=29.84 Aligned_cols=35 Identities=11% Similarity=0.137 Sum_probs=18.9
Q ss_pred EEEEEEEcccchhHHHHHHHHHHHhhc-CCceEEEE
Q 001056 77 VKIVYVVLEAQYQSALSAAVQALNQQV-NYASYEVV 111 (1171)
Q Consensus 77 ~~~v~v~~~~~~~~~~~~a~~~l~~~~-~~~~~~~~ 111 (1171)
|||++|...+.-.|.-.+-++.+.+.. ++.++++.
T Consensus 1 MkiLiI~gspr~~s~t~~l~~~~~~~~~~g~~v~~~ 36 (196)
T 3lcm_A 1 MKILIVYTHPNPTSFNAEILKQVQTNLSKEHTVSTL 36 (196)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHSCTTSEEEEE
T ss_pred CEEEEEEeCCCCCChHHHHHHHHHHHhcCCCeEEEE
Confidence 788888887655443333333333332 45566654
Done!