Query 001056
Match_columns 1171
No_of_seqs 270 out of 826
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 08:47:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001056.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/001056hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uc8a1 c.30.1.6 (A:1-88) Lysi 62.6 5.4 0.0004 34.3 5.8 66 337-418 11-79 (88)
2 d1jhfa1 a.4.5.2 (A:2-72) LexA 54.1 1.7 0.00012 36.3 0.8 36 504-539 21-56 (71)
3 d1stza1 a.4.5.51 (A:14-100) He 50.3 2.1 0.00015 37.3 0.8 36 504-539 20-56 (87)
4 d1l9xa_ c.23.16.1 (A:) gamma-g 48.9 4.5 0.00033 41.9 3.4 61 318-387 2-66 (288)
5 d1m1na_ c.92.2.3 (A:) Nitrogen 44.8 51 0.0037 36.2 11.8 90 339-433 160-263 (477)
6 d2bisa1 c.87.1.8 (A:1-437) Gly 43.6 5.5 0.0004 41.9 3.1 35 498-540 2-37 (437)
7 d1ehia1 c.30.1.2 (A:3-134) D-a 37.9 25 0.0018 32.0 6.4 35 320-359 2-43 (132)
8 d2fzva1 c.23.5.4 (A:1-233) Put 37.6 20 0.0015 35.9 6.2 39 72-111 30-71 (233)
9 d1o4va_ c.23.8.1 (A:) N5-CAIR 34.7 34 0.0025 32.7 7.0 87 320-422 1-87 (169)
10 d1rtta_ c.23.5.4 (A:) Hypothet 34.5 34 0.0025 32.1 7.1 35 77-112 1-35 (174)
11 d1jyea_ c.93.1.1 (A:) Lac-repr 34.3 21 0.0015 35.4 5.8 82 321-417 2-86 (271)
12 d1iowa1 c.30.1.2 (A:1-96) D-Al 33.4 23 0.0016 30.7 5.0 79 321-417 4-85 (96)
13 d1t0ia_ c.23.5.4 (A:) Hypothet 28.9 53 0.0039 30.9 7.5 35 77-111 1-43 (185)
14 d1xmpa_ c.23.8.1 (A:) N5-CAIR 27.9 55 0.004 30.8 7.1 88 319-422 1-88 (155)
15 d1miob_ c.92.2.3 (B:) Nitrogen 26.3 85 0.0062 33.8 9.5 87 321-416 98-198 (457)
16 d2iw1a1 c.87.1.8 (A:2-371) Lip 26.1 11 0.00082 37.8 1.8 33 499-540 2-34 (370)
17 d2nzug1 c.93.1.1 (G:58-332) Gl 23.7 71 0.0052 30.7 7.6 82 320-418 4-88 (275)
18 d2dria_ c.93.1.1 (A:) D-ribose 21.6 85 0.0062 29.9 7.6 84 320-418 2-88 (271)
19 d1xg5a_ c.2.1.2 (A:) Putative 21.4 2.2E+02 0.016 27.7 10.9 80 78-167 11-95 (257)
20 d1zl0a2 c.23.16.7 (A:3-169) LD 20.3 1E+02 0.0074 29.0 7.5 60 319-388 13-84 (167)
No 1
>d1uc8a1 c.30.1.6 (A:1-88) Lysine biosynthesis enzyme LysX, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=62.55 E-value=5.4 Score=34.29 Aligned_cols=66 Identities=15% Similarity=0.113 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHCCCcEEEEEecCCCCchhhhHhhccccCCC---ccceeeeecccccccCCCCCCCchhHHHHhhhCCC
Q 001056 337 SHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVDPVMKK---PMVNSAISLTGFALVGGPARQDHPRAIEALRKLDV 413 (1171)
Q Consensus 337 ~~~daLI~~LE~~G~~vipvf~~gl~~~~~v~~~f~~~~~~~---~~VDavIn~tgFsL~ggpa~~~~~~~~~~L~~LnV 413 (1171)
....-|++++|++|..+..+-..... +..+ ++. ..+|+||.-++- .+ -.-.....|+.+||
T Consensus 11 ~eEk~L~~a~~~rG~~~~~id~~~~~-------~~l~--~~~~~~~~~D~Vi~R~~s---~~----~~~~v~~~lE~~Gv 74 (88)
T d1uc8a1 11 PDERMLFERAEALGLPYKKVYVPALP-------MVLG--ERPKELEGVTVALERCVS---QS----RGLAAARYLTALGI 74 (88)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEGGGCC-------EETT--BCCGGGTTCCEEEECCSS---HH----HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCeEEEEehhhcE-------EEcc--CCCCccCCCCEEEEeccc---cc----hHHHHHHHHHHCCC
Confidence 34566999999999999987543321 1111 111 236888864210 00 01234578999999
Q ss_pred cEEeE
Q 001056 414 PYIVA 418 (1171)
Q Consensus 414 Pvl~a 418 (1171)
|+++.
T Consensus 75 ~v~Ns 79 (88)
T d1uc8a1 75 PVVNR 79 (88)
T ss_dssp CEESC
T ss_pred cEecc
Confidence 99975
No 2
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=54.10 E-value=1.7 Score=36.27 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=32.9
Q ss_pred ecCCCCCCCccccCCCChHHHHHHHHHHHHHCCCCC
Q 001056 504 FSFPPDKGNIGTAAYLNVFSSIFSVLKDLQRDGYNV 539 (1171)
Q Consensus 504 ~nyPp~~g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~v 539 (1171)
++|||.-..|+.+.++-++.++.+.|++|.+.||=.
T Consensus 21 ~G~~Ps~rei~~~~g~~S~stv~~~l~~Le~kG~I~ 56 (71)
T d1jhfa1 21 TGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVIE 56 (71)
T ss_dssp HSSCCCHHHHHHHTTCSSHHHHHHHHHHHHHTTSEE
T ss_pred hCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHCcCee
Confidence 479999999999999999999999999999999954
No 3
>d1stza1 a.4.5.51 (A:14-100) Heat-inducible transcription repressor HrcA, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=50.33 E-value=2.1 Score=37.25 Aligned_cols=36 Identities=17% Similarity=0.150 Sum_probs=32.2
Q ss_pred ecCCCCCCCccccCCCC-hHHHHHHHHHHHHHCCCCC
Q 001056 504 FSFPPDKGNIGTAAYLN-VFSSIFSVLKDLQRDGYNV 539 (1171)
Q Consensus 504 ~nyPp~~g~iGtAa~LD-v~~Sl~~iL~~Lk~~GY~v 539 (1171)
.++||+-..|....+|+ .++++.+.|.+|.+.||=.
T Consensus 20 ~g~Pv~s~~i~~~~~l~~S~aTIRn~m~~LE~~G~l~ 56 (87)
T d1stza1 20 NKKPVSSQRVLEVSNIEFSSATIRNDMKKLEYLGYIY 56 (87)
T ss_dssp HCSCBCHHHHHHHSCCCSCHHHHHHHHHHHHHTTSEE
T ss_pred cCCccCHHHHHHHhCCCCCHHHHHHHHHHHHHCCccc
Confidence 46899988898889999 7999999999999999943
No 4
>d1l9xa_ c.23.16.1 (A:) gamma-glutamyl hydrolase {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.90 E-value=4.5 Score=41.88 Aligned_cols=61 Identities=23% Similarity=0.343 Sum_probs=37.2
Q ss_pred CCCeEEEEeecccc----ccCCChHHHHHHHHHHHCCCcEEEEEecCCCCchhhhHhhccccCCCccceeeeec
Q 001056 318 DAPVIGLILQRSHI----VTGDDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISL 387 (1171)
Q Consensus 318 ~~p~Vgil~yrs~~----~~g~~~~~daLI~~LE~~G~~vipvf~~gl~~~~~v~~~f~~~~~~~~~VDavIn~ 387 (1171)
.||+|||+...... ..+..-....-++.+|+.|..|+|+....- ...++++|.. +|.||-.
T Consensus 2 ~kPiIGI~~~~~~~~~~~~~~~~yi~~sYvk~ie~aGa~vvpi~~~~~--~~~~~~~l~~-------idGillp 66 (288)
T d1l9xa_ 2 KKPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLT--EKDYEILFKS-------INGILFP 66 (288)
T ss_dssp CCCEEEEECEECCSHHHHTTCSEEEEHHHHHHHHHTTCEEEEECSSCC--HHHHHHHHHH-------SSEEEEC
T ss_pred CCCEEEEeCCcccCcccccchHHHHHHHHHHHHHHCCCEEEEECCCCC--HHHHHHHHhh-------cCCeEec
Confidence 37999999753221 011111223568999999999999975432 2345565543 6777754
No 5
>d1m1na_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha chain {Azotobacter vinelandii [TaxId: 354]}
Probab=44.84 E-value=51 Score=36.15 Aligned_cols=90 Identities=11% Similarity=0.080 Sum_probs=55.6
Q ss_pred HHHHHHHHHH-CCCcEEEEEecCCCC-c---------hhhhHhhccccCCCccc---eeeeecccccccCCCCCCCchhH
Q 001056 339 YVAVIMELEA-RGAKVIPIFAGGLDF-A---------GPVERFFVDPVMKKPMV---NSAISLTGFALVGGPARQDHPRA 404 (1171)
Q Consensus 339 ~daLI~~LE~-~G~~vipvf~~gl~~-~---------~~v~~~f~~~~~~~~~V---DavIn~tgFsL~ggpa~~~~~~~ 404 (1171)
++++++++++ -|..||||-+.|+.. + .++.+++.......... .-.||+.|-...+ .|..+-
T Consensus 160 i~~v~~~~~~~~~~~Vi~v~t~Gf~g~s~~~G~~~a~~al~~~l~~~~~~~~~~~~~~~~VNiiG~~~~~----gD~~ei 235 (477)
T d1m1na_ 160 IESVSKVKGAELSKTIVPVRCEGFRGVSQSLGHHIANDAVRDWVLGKRDEDTTFASTPYDVAIIGDYNIG----GDAWSS 235 (477)
T ss_dssp HHHHHHHHHHHHTCCEEEECCCTTSSSSHHHHHHHHHHHHHHHTTTTTTTCCCSCCCTTEEEEEEECCBT----TTTHHH
T ss_pred HHHHHHHHHHHhCCcEEEEecCCccccchhHHHHHHHHHHHHHhhcccCCcccccCCCceeeecCCCCCc----ccHHHH
Confidence 7889999986 499999998877632 1 12444544311111100 1136655422222 355566
Q ss_pred HHHhhhCCCcEEeEecCCCCCHHHHhcCC
Q 001056 405 IEALRKLDVPYIVALPLVFQTTEEWLNST 433 (1171)
Q Consensus 405 ~~~L~~LnVPvl~ai~l~~qt~eeW~~s~ 433 (1171)
..+|+++++.|...++ ...|.++.+..+
T Consensus 236 k~lLe~~Gi~v~~~~~-g~~s~eei~~~~ 263 (477)
T d1m1na_ 236 RILLEEMGLRCVAQWS-GDGSISEIELTP 263 (477)
T ss_dssp HHHHHHTTCEEEEEEE-TTCCHHHHHHGG
T ss_pred HHHHHHccCCeEEEcC-CCCCHHHHHhhh
Confidence 7899999999987775 467899998763
No 6
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}
Probab=43.59 E-value=5.5 Score=41.92 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=27.9
Q ss_pred eEEEEeecCCCCC-CCccccCCCChHHHHHHHHHHHHHCCCCCC
Q 001056 498 KLAITVFSFPPDK-GNIGTAAYLNVFSSIFSVLKDLQRDGYNVE 540 (1171)
Q Consensus 498 KVAIil~nyPp~~-g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~vg 540 (1171)
||+|+-+.|||.+ |.+|+ -+..+.++|++.|++|.
T Consensus 2 kIl~~~~~~pP~~~GG~~~--------~~~~La~~L~~~Gh~V~ 37 (437)
T d2bisa1 2 KVLLLGFEFLPVKVGGLAE--------ALTAISEALASLGHEVL 37 (437)
T ss_dssp EEEEECSCCTTCCSSSHHH--------HHHHHHHHHHHTTCEEE
T ss_pred EEEEECCccCCcccCCHHH--------HHHHHHHHHHHcCCEEE
Confidence 8999999999975 45553 34567889999999994
No 7
>d1ehia1 c.30.1.2 (A:3-134) D-alanine:D-lactate ligase VanA, N-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]}
Probab=37.90 E-value=25 Score=32.00 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=25.0
Q ss_pred CeEEEEeeccccccCCChHH------HHHHHHHHHCC-CcEEEEEec
Q 001056 320 PVIGLILQRSHIVTGDDSHY------VAVIMELEARG-AKVIPIFAG 359 (1171)
Q Consensus 320 p~Vgil~yrs~~~~g~~~~~------daLI~~LE~~G-~~vipvf~~ 359 (1171)
.+|+|+|-.. ..+|. ..++++|.+.| .+|+|++..
T Consensus 2 k~Iavl~GG~-----S~EheVSl~Sa~~v~~~L~~~~~y~v~~i~i~ 43 (132)
T d1ehia1 2 KRVALIFGGN-----SSEHDVSKRSAQNFYNAIEATGKYEIIVFAIA 43 (132)
T ss_dssp EEEEEEEECS-----STTHHHHHHHHHHHHHHHHHHSSEEEEEEEEC
T ss_pred CEEEEEeCcC-----cchhHHHHHHHHHHHHhhhccCceeEEEEEEc
Confidence 3699998642 22332 45888998887 899999974
No 8
>d2fzva1 c.23.5.4 (A:1-233) Putative arsenical resistance protein {Shigella flexneri [TaxId: 623]}
Probab=37.63 E-value=20 Score=35.90 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=21.5
Q ss_pred CCCCcEEEEEEEcccchhH---HHHHHHHHHHhhcCCceEEEE
Q 001056 72 DNLPTVKIVYVVLEAQYQS---ALSAAVQALNQQVNYASYEVV 111 (1171)
Q Consensus 72 ~~~~~~~~v~v~~~~~~~~---~~~~a~~~l~~~~~~~~~~~~ 111 (1171)
.+.+++||++|.+...-.+ .+.+.+....++. |.++++.
T Consensus 30 ~~~~~~KIl~I~GS~R~~s~s~~la~~~~~~l~~~-G~ev~~i 71 (233)
T d2fzva1 30 PDAPPVRILLLYGSLRARSFSRLAVEEAARLLQFF-GAETRIF 71 (233)
T ss_dssp CCCSCCEEEEEESCCSSSCHHHHHHHHHHHHHHHT-TCEEEEB
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHHHHhhhc-CeEEEEE
Confidence 3467789999998765433 3433333333332 3555543
No 9
>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]}
Probab=34.66 E-value=34 Score=32.71 Aligned_cols=87 Identities=16% Similarity=0.162 Sum_probs=55.5
Q ss_pred CeEEEEeeccccccCCChHHHHHHHHHHHCCCcEEEEEecCCCCchhhhHhhccccCCCccceeeeecccccccCCCCCC
Q 001056 320 PVIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISLTGFALVGGPARQ 399 (1171)
Q Consensus 320 p~Vgil~yrs~~~~g~~~~~daLI~~LE~~G~~vipvf~~gl~~~~~v~~~f~~~~~~~~~VDavIn~tgFsL~ggpa~~ 399 (1171)
|.|+|++-.+ .|..+.....+.|+.-|+..--...++-....-+.+|... -....++++|-..|.+-.
T Consensus 1 PkV~Ii~Gs~----SD~~~~~~a~~~L~~~gi~~~~~v~saHr~p~rl~~~~~~--~~~~~~~viIa~AG~aa~------ 68 (169)
T d1o4va_ 1 PRVGIIMGSD----SDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKN--AEERGIEVIIAGAGGAAH------ 68 (169)
T ss_dssp CEEEEEESCG----GGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHH--TTTTTCCEEEEEEESSCC------
T ss_pred CeEEEEECcH----hhHHHHHHHHHHHHHcCCcEEEEEeeeecCHHHHHHHHHH--HHhcCCeEEEEeecCCcC------
Confidence 6799997643 3788999999999999999876665554433345555443 122347888887765410
Q ss_pred CchhHHHHhhhCCCcEEeEecCC
Q 001056 400 DHPRAIEALRKLDVPYIVALPLV 422 (1171)
Q Consensus 400 ~~~~~~~~L~~LnVPvl~ai~l~ 422 (1171)
-+.. +=.....||| ++|.+
T Consensus 69 -Lpgv--vA~~t~~PVI-gvP~~ 87 (169)
T d1o4va_ 69 -LPGM--VASITHLPVI-GVPVK 87 (169)
T ss_dssp -HHHH--HHHHCSSCEE-EEEEC
T ss_pred -chHH--HHHhcceeEE-ecccc
Confidence 1112 2235678999 55653
No 10
>d1rtta_ c.23.5.4 (A:) Hypothetical protein PA1204 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=34.54 E-value=34 Score=32.14 Aligned_cols=35 Identities=20% Similarity=0.012 Sum_probs=21.4
Q ss_pred EEEEEEEcccchhHHHHHHHHHHHhhcCCceEEEEE
Q 001056 77 VKIVYVVLEAQYQSALSAAVQALNQQVNYASYEVVG 112 (1171)
Q Consensus 77 ~~~v~v~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~ 112 (1171)
|||++|.+...-.+.-...++.+.+..+. ..++..
T Consensus 1 MKIl~i~GS~r~~s~s~~l~~~~~~~~~~-~~ev~~ 35 (174)
T d1rtta_ 1 IKVLGISGSLRSGSYNSAALQEAIGLVPP-GMSIEL 35 (174)
T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHTTCCT-TCEEEE
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHhcCC-CCEEEE
Confidence 79999999877665555555555555432 344443
No 11
>d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain) {Escherichia coli [TaxId: 562]}
Probab=34.32 E-value=21 Score=35.39 Aligned_cols=82 Identities=16% Similarity=0.180 Sum_probs=47.1
Q ss_pred eEEEEeeccccccCCChHHHHHHHHHHHCCCcEEEEEecCCCCc---hhhhHhhccccCCCccceeeeecccccccCCCC
Q 001056 321 VIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFA---GPVERFFVDPVMKKPMVNSAISLTGFALVGGPA 397 (1171)
Q Consensus 321 ~Vgil~yrs~~~~g~~~~~daLI~~LE~~G~~vipvf~~gl~~~---~~v~~~f~~~~~~~~~VDavIn~tgFsL~ggpa 397 (1171)
.||+++..-.. ......+.++-++++++|++++-.++..-+.. ..++.+. . ..||+||-... .
T Consensus 2 ~igv~~~~l~~-~~~~~i~~~i~~~a~~~Gy~v~v~~~~~~~~~~~~~~l~~l~-~-----~~vdgiIl~~~--~----- 67 (271)
T d1jyea_ 2 LIGVATSSLAL-HAPSQIVAAILSRADQLGASVVVSMVERSGVEACKTAVHNLL-A-----QRVSGLIINYP--L----- 67 (271)
T ss_dssp EEEEEESCTTS-HHHHHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHHH-T-----TTCSCEEEESC--C-----
T ss_pred EEEEEeCCCCC-hHHHHHHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHHHHH-h-----cCCCEEEeccc--c-----
Confidence 58888763322 22346788899999999999984443322211 1233322 1 24898874311 1
Q ss_pred CCCchhHHHHhhhCCCcEEe
Q 001056 398 RQDHPRAIEALRKLDVPYIV 417 (1171)
Q Consensus 398 ~~~~~~~~~~L~~LnVPvl~ 417 (1171)
.+.+.....+++.++||+.
T Consensus 68 -~~~~~~~~~~~~~~iPvV~ 86 (271)
T d1jyea_ 68 -DDQDAIAVEAACTNVPALF 86 (271)
T ss_dssp -CHHHHHHHHHHTTTSCEEE
T ss_pred -CchhHHHHHHHhcCCCeee
Confidence 1122334567899999873
No 12
>d1iowa1 c.30.1.2 (A:1-96) D-Ala-D-Ala ligase, N-domain {Escherichia coli, gene ddlB [TaxId: 562]}
Probab=33.39 E-value=23 Score=30.72 Aligned_cols=79 Identities=19% Similarity=0.203 Sum_probs=47.3
Q ss_pred eEEEEeeccc---cccCCChHHHHHHHHHHHCCCcEEEEEecCCCCchhhhHhhccccCCCccceeeeecccccccCCCC
Q 001056 321 VIGLILQRSH---IVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISLTGFALVGGPA 397 (1171)
Q Consensus 321 ~Vgil~yrs~---~~~g~~~~~daLI~~LE~~G~~vipvf~~gl~~~~~v~~~f~~~~~~~~~VDavIn~tgFsL~ggpa 397 (1171)
+|+||+-... -++ ..--.++.++|.+.|.+|..+..... .+.. .....+|++.|+ +-|.+
T Consensus 4 kI~vl~GG~S~E~~iS--l~Sa~~v~~~L~~~~~~v~~i~~~~~--------~~~~--~~~~~~d~vF~~----lHG~~- 66 (96)
T d1iowa1 4 KIAVLLGGTSAEREVS--LNSGAAVLAGLREGGIDAYPVDPKEV--------DVTQ--LKSMGFQKVFIA----LHGRG- 66 (96)
T ss_dssp EEEEECCCSSTTHHHH--HHHHHHHHHHHHHTTCEEEEECTTTS--------CGGG--TTTTTEEEEEEC----CCSTT-
T ss_pred eEEEEeCcCchhhHhH--HhhHHHHHHHHHHcCeeEeeecCccc--------cchh--hhccCceeEEEe----ccCcc-
Confidence 5899875321 011 11125789999999999987743211 1111 123458998884 33433
Q ss_pred CCCchhHHHHhhhCCCcEEe
Q 001056 398 RQDHPRAIEALRKLDVPYIV 417 (1171)
Q Consensus 398 ~~~~~~~~~~L~~LnVPvl~ 417 (1171)
+.|. .-+.+|+.++|||.-
T Consensus 67 GEdG-~iQ~~le~l~IPytG 85 (96)
T d1iowa1 67 GEDG-TLQGMLELMGLPYTG 85 (96)
T ss_dssp TSSS-HHHHHHHHHTCCBSS
T ss_pred hhcc-HHHHHHHHcCCCccC
Confidence 3333 456899999999864
No 13
>d1t0ia_ c.23.5.4 (A:) Hypothetical protein Ylr011wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=28.90 E-value=53 Score=30.93 Aligned_cols=35 Identities=14% Similarity=0.116 Sum_probs=19.9
Q ss_pred EEEEEEEccc---chhHHHHHHHHHHHhh-----cCCceEEEE
Q 001056 77 VKIVYVVLEA---QYQSALSAAVQALNQQ-----VNYASYEVV 111 (1171)
Q Consensus 77 ~~~v~v~~~~---~~~~~~~~a~~~l~~~-----~~~~~~~~~ 111 (1171)
|||++|.+.+ ++...+.+.+....+. .++.++++.
T Consensus 1 MKIlvI~GS~R~~s~~~~la~~~~~~l~~~~~~~~~g~~v~~i 43 (185)
T d1t0ia_ 1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVV 43 (185)
T ss_dssp CEEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEE
T ss_pred CEEEEEeCCCCCCChHHHHHHHHHHHHHHhhhhcCCCcEEEEE
Confidence 7999998876 3445554444443333 234555544
No 14
>d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]}
Probab=27.92 E-value=55 Score=30.76 Aligned_cols=88 Identities=14% Similarity=0.128 Sum_probs=55.2
Q ss_pred CCeEEEEeeccccccCCChHHHHHHHHHHHCCCcEEEEEecCCCCchhhhHhhccccCCCccceeeeecccccccCCCCC
Q 001056 319 APVIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISLTGFALVGGPAR 398 (1171)
Q Consensus 319 ~p~Vgil~yrs~~~~g~~~~~daLI~~LE~~G~~vipvf~~gl~~~~~v~~~f~~~~~~~~~VDavIn~tgFsL~ggpa~ 398 (1171)
+|.|+|++-.+ .|..+.......|++-|+..-....++-....-+.+|..+. ....++++|...|-+-
T Consensus 1 K~~V~IimGS~----SD~~~~~~a~~~L~~~gi~~~~~v~SAHrtp~rl~~~~~~~--~~~~~~viIa~AG~aa------ 68 (155)
T d1xmpa_ 1 KSLVGVIMGST----SDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETA--RERGLKVIIAGAGGAA------ 68 (155)
T ss_dssp CCSEEEEESSG----GGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHT--TTTTCCEEEEEEESSC------
T ss_pred CCEEEEEECcH----hhHHHHHHHHHHHHHcCCcEEEEEechhcChHHHHHHHHHH--HhhcceEEEeecccCC------
Confidence 57899997643 37789999999999999998765555444333345555431 2234688887766430
Q ss_pred CCchhHHHHhhhCCCcEEeEecCC
Q 001056 399 QDHPRAIEALRKLDVPYIVALPLV 422 (1171)
Q Consensus 399 ~~~~~~~~~L~~LnVPvl~ai~l~ 422 (1171)
--+.. +=.....||| ++|..
T Consensus 69 -~Lpgv--va~~t~~PVI-gVP~~ 88 (155)
T d1xmpa_ 69 -HLPGM--VAAKTNLPVI-GVPVQ 88 (155)
T ss_dssp -CHHHH--HHTTCCSCEE-EEEEC
T ss_pred -CchhH--HHHhccceEE-EEEee
Confidence 01111 2235678999 55653
No 15
>d1miob_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta chain {Clostridium pasteurianum [TaxId: 1501]}
Probab=26.29 E-value=85 Score=33.82 Aligned_cols=87 Identities=17% Similarity=0.175 Sum_probs=48.6
Q ss_pred eEEEEeeccccccCCChHHHHHHHHHHHC-----CCcEEEEEecCCCCch------h---hhHhhccccCCCccceeeee
Q 001056 321 VIGLILQRSHIVTGDDSHYVAVIMELEAR-----GAKVIPIFAGGLDFAG------P---VERFFVDPVMKKPMVNSAIS 386 (1171)
Q Consensus 321 ~Vgil~yrs~~~~g~~~~~daLI~~LE~~-----G~~vipvf~~gl~~~~------~---v~~~f~~~~~~~~~VDavIn 386 (1171)
.|+|+.--..-+-|+ .+++++++++++ |..|+++-+.|+.... + +-+.+..+... ..--||
T Consensus 98 ~I~v~~tC~~~iIGd--Di~~v~~~~~~~~~~p~~~~vi~v~t~gf~g~~~~g~~~a~~~l~~~~~~~~~~---~~~~vN 172 (457)
T d1miob_ 98 IIAVHTTCLSETLGD--DLPTYISQMEDAGSIPEGKLVIHTNTPSYVGSHVTGFANMVQGIVNYLSENTGA---KNGKIN 172 (457)
T ss_dssp EEEEEECHHHHHHTC--CHHHHHHHHHHTTCSCTTCEEEEECCCTTSSCHHHHHHHHHHHHHHHHCCCCSC---CCSCEE
T ss_pred EEEEecCCchhhcCC--CHHHHHHHHHHhcCCCCCceEEEEeCCccCCcchHHHHHHHHHHHHHhccccCC---CCCccc
Confidence 566665444333343 378899999987 5668888777765321 1 22334332111 122355
Q ss_pred cccccccCCCCCCCchhHHHHhhhCCCcEE
Q 001056 387 LTGFALVGGPARQDHPRAIEALRKLDVPYI 416 (1171)
Q Consensus 387 ~tgFsL~ggpa~~~~~~~~~~L~~LnVPvl 416 (1171)
+.+.... ..|..+-..+|+++|+.+.
T Consensus 173 iig~~~~----~~d~~ei~~ll~~~Gl~~~ 198 (457)
T d1miob_ 173 VIPGFVG----PADMREIKRLFEAMDIPYI 198 (457)
T ss_dssp EECCSCC----HHHHHHHHHHHHHHTCCEE
T ss_pred ccCCCCC----cccHHHHHHHHHHcCCcee
Confidence 4432111 1244556689999999986
No 16
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]}
Probab=26.07 E-value=11 Score=37.84 Aligned_cols=33 Identities=15% Similarity=0.402 Sum_probs=27.4
Q ss_pred EEEEeecCCCCCCCccccCCCChHHHHHHHHHHHHHCCCCCC
Q 001056 499 LAITVFSFPPDKGNIGTAAYLNVFSSIFSVLKDLQRDGYNVE 540 (1171)
Q Consensus 499 VAIil~nyPp~~g~iGtAa~LDv~~Sl~~iL~~Lk~~GY~vg 540 (1171)
||++.|+|.| .| |+ -..+.++.++|.+.||+|.
T Consensus 2 i~f~~~~y~p----~G-G~----e~~~~~la~~L~~~G~~V~ 34 (370)
T d2iw1a1 2 VAFCLYKYFP----FG-GL----QRDFMRIASTVAARGHHVR 34 (370)
T ss_dssp EEEECSEECT----TC-HH----HHHHHHHHHHHHHTTCCEE
T ss_pred EEEEecCCCC----CC-CH----HHHHHHHHHHHHHCCCEEE
Confidence 8999999987 35 22 4688999999999999994
No 17
>d2nzug1 c.93.1.1 (G:58-332) Glucose-resistance amylase regulator CcpA, C-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=23.71 E-value=71 Score=30.75 Aligned_cols=82 Identities=15% Similarity=0.182 Sum_probs=47.3
Q ss_pred CeEEEEeeccccccCC---ChHHHHHHHHHHHCCCcEEEEEecCCCCchhhhHhhccccCCCccceeeeecccccccCCC
Q 001056 320 PVIGLILQRSHIVTGD---DSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISLTGFALVGGP 396 (1171)
Q Consensus 320 p~Vgil~yrs~~~~g~---~~~~daLI~~LE~~G~~vipvf~~gl~~~~~v~~~f~~~~~~~~~VDavIn~tgFsL~ggp 396 (1171)
.||||++-. ++ | ...+..+.++++++|++++...+.+ +. ..-.+++.. . -...||+||-....
T Consensus 4 ~tIgvvvp~---l~-~~f~~~~~~gi~~~~~~~g~~~~~~~~~~-~~-~~e~~~i~~-~-~~~~vdgii~~~~~------ 69 (275)
T d2nzug1 4 TTVGVIIPD---IS-NIFYAELARGIEDIATMYKYNIILSNSDQ-NQ-DKELHLLNN-M-LGKQVDGIIFMSGN------ 69 (275)
T ss_dssp SEEEEEESC---TT-SHHHHHHHHHHHHHHHHTTCEEEEEECTT-CH-HHHHHHHHH-H-HTTCCSEEEECCSC------
T ss_pred CEEEEECCC---CC-CHHHHHHHHHHHHHHHHcCCEEEEEECCC-CH-HHHHHHHHH-H-HhcCCceeeccccc------
Confidence 599999852 11 2 2455678888999999998544322 21 111122211 0 01248988865322
Q ss_pred CCCCchhHHHHhhhCCCcEEeE
Q 001056 397 ARQDHPRAIEALRKLDVPYIVA 418 (1171)
Q Consensus 397 a~~~~~~~~~~L~~LnVPvl~a 418 (1171)
..+.....+.+.++|++..
T Consensus 70 ---~~~~~~~~l~~~~~pvv~~ 88 (275)
T d2nzug1 70 ---VTEEHVEELKKSPVPVVLA 88 (275)
T ss_dssp ---CCHHHHHHHHHCSSCEEEE
T ss_pred ---hhhHHHHHHhhcccccccc
Confidence 1334556789999998754
No 18
>d2dria_ c.93.1.1 (A:) D-ribose-binding protein {Escherichia coli, strain k-12 [TaxId: 562]}
Probab=21.64 E-value=85 Score=29.86 Aligned_cols=84 Identities=11% Similarity=0.059 Sum_probs=46.2
Q ss_pred CeEEEEeeccccccCC---ChHHHHHHHHHHHCCCcEEEEEecCCCCchhhhHhhccccCCCccceeeeecccccccCCC
Q 001056 320 PVIGLILQRSHIVTGD---DSHYVAVIMELEARGAKVIPIFAGGLDFAGPVERFFVDPVMKKPMVNSAISLTGFALVGGP 396 (1171)
Q Consensus 320 p~Vgil~yrs~~~~g~---~~~~daLI~~LE~~G~~vipvf~~gl~~~~~v~~~f~~~~~~~~~VDavIn~tgFsL~ggp 396 (1171)
-||||++..- + | .....++-+++++.|++++ ++...-+. ....+.+.. --...+|++|-....
T Consensus 2 ~tIgvvvp~~---~-~~f~~~~~~gi~~~a~~~g~~~~-i~~~~~~~-~~~~~~i~~--~~~~~~d~ii~~~~~------ 67 (271)
T d2dria_ 2 DTIALVVSTL---N-NPFFVSLKDGAQKEADKLGYNLV-VLDSQNNP-AKELANVQD--LTVRGTKILLINPTD------ 67 (271)
T ss_dssp CEEEEEESCS---S-SHHHHHHHHHHHHHHHHHTCEEE-EEECTTCH-HHHHHHHHH--HTTTTEEEEEECCSS------
T ss_pred CEEEEEeCCC---C-CHHHHHHHHHHHHHHHHcCCEEE-EEeCCCCH-HHHHHHHHH--HHhcCCccccccccc------
Confidence 4899998521 1 1 2344566677888999987 44332221 111222221 112348888764321
Q ss_pred CCCCchhHHHHhhhCCCcEEeE
Q 001056 397 ARQDHPRAIEALRKLDVPYIVA 418 (1171)
Q Consensus 397 a~~~~~~~~~~L~~LnVPvl~a 418 (1171)
........+.+++.++|++.-
T Consensus 68 -~~~~~~~~~~~~~~~ipvV~~ 88 (271)
T d2dria_ 68 -SDAVGNAVKMANQANIPVITL 88 (271)
T ss_dssp -TTTTHHHHHHHHHTTCCEEEE
T ss_pred -ccchHHHHHHHhhcceeEEEe
Confidence 111235667888999998854
No 19
>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.42 E-value=2.2e+02 Score=27.71 Aligned_cols=80 Identities=18% Similarity=0.137 Sum_probs=51.7
Q ss_pred EEEEEEcccchhHHHHHHHHHHHhhcCCceEEEEEeehhhccChhhHHHHHHHhhcC----CEEEEec-cccHHHHHHHH
Q 001056 78 KIVYVVLEAQYQSALSAAVQALNQQVNYASYEVVGYLVEELRDVDTYKTFCKDLENA----NIFIGSL-IFVEELALKIK 152 (1171)
Q Consensus 78 ~~v~v~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a----d~~~~sl-lf~~~~~~~~~ 152 (1171)
|+|+||+-+.=.+.. .++.|.++ |.+|-++. +|++.++++++.+... .++.... +..++.++.+.
T Consensus 11 Kv~lITGas~GIG~a--iA~~la~~--G~~Vv~~~------r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v 80 (257)
T d1xg5a_ 11 RLALVTGASGGIGAA--VARALVQQ--GLKVVGCA------RTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMF 80 (257)
T ss_dssp CEEEEESTTSHHHHH--HHHHHHHT--TCEEEEEE------SCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHH--HHHHHHHC--CCEEEEEE------CCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHH
Confidence 599999987655542 34455554 34454432 4667788888887764 4443322 45778888777
Q ss_pred HHHHHhhcccCEEEe
Q 001056 153 AAVEKERDRLDAVLV 167 (1171)
Q Consensus 153 ~~~~~~~~~~~~~~~ 167 (1171)
+.+...-.++|.++-
T Consensus 81 ~~~~~~~g~iD~lVn 95 (257)
T d1xg5a_ 81 SAIRSQHSGVDICIN 95 (257)
T ss_dssp HHHHHHHCCCSEEEE
T ss_pred HHHHHhcCCCCEEEe
Confidence 777777778997665
No 20
>d1zl0a2 c.23.16.7 (A:3-169) LD-carboxypeptidase A, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=20.35 E-value=1e+02 Score=29.00 Aligned_cols=60 Identities=18% Similarity=0.179 Sum_probs=41.0
Q ss_pred CCeEEEEeeccccccCCChHHHHHHHHHHHCCCcEEEEEecCCC-------Cc-----hhhhHhhccccCCCccceeeee
Q 001056 319 APVIGLILQRSHIVTGDDSHYVAVIMELEARGAKVIPIFAGGLD-------FA-----GPVERFFVDPVMKKPMVNSAIS 386 (1171)
Q Consensus 319 ~p~Vgil~yrs~~~~g~~~~~daLI~~LE~~G~~vipvf~~gl~-------~~-----~~v~~~f~~~~~~~~~VDavIn 386 (1171)
.-+|||+.--+.+ +...+++.++.||++|++|+. ...+. .. ..+.++|.+ +.|++|+.
T Consensus 13 Gd~I~iiAPS~~~---~~~~l~~~~~~L~~~G~~v~~--~~~~~~~~~~~agtd~~Ra~dL~~a~~d-----p~i~aI~~ 82 (167)
T d1zl0a2 13 DGRVALIAPASAI---ATDVLEATLRQLEVHGVDYHL--GRHVEARYRYLAGTVEQRLEDLHNAFDM-----PDITAVWC 82 (167)
T ss_dssp CSEEEEECCSBCC---CHHHHHHHHHHHHHTTCCEEE--CTTTTCCBTTBSSCHHHHHHHHHHHHHS-----TTEEEEEE
T ss_pred CCEEEEEeCCCcC---CHHHHHHHHHHHHHCCCEEEE--CcccccccCcccCCHHHHHHHHHHhccC-----cCCCEEEE
Confidence 3489999987764 457789999999999999874 22211 11 123455654 45899988
Q ss_pred cc
Q 001056 387 LT 388 (1171)
Q Consensus 387 ~t 388 (1171)
..
T Consensus 83 ~r 84 (167)
T d1zl0a2 83 LR 84 (167)
T ss_dssp SC
T ss_pred Cc
Confidence 64
Done!